#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
AAA_assoc_2	PF16193.5	gi|529043438|ref|YP_008369657.1|	-	7.1e-05	23.1	4.6	0.00018	21.8	1.0	2.5	2	0	0	2	2	2	1	AAA	C-terminal	domain
Penicillinase_R	PF03965.16	gi|529043438|ref|YP_008369657.1|	-	0.001	19.4	0.0	0.0016	18.7	0.0	1.3	1	0	0	1	1	1	1	Penicillinase	repressor
HD_3	PF13023.6	gi|529043439|ref|YP_008369658.1|	-	0.059	13.3	0.1	0.059	13.3	0.1	1.0	1	0	0	1	1	1	0	HD	domain
Ppx-GppA	PF02541.16	gi|529043439|ref|YP_008369658.1|	-	0.13	11.7	0.0	0.14	11.6	0.0	1.0	1	0	0	1	1	1	0	Ppx/GppA	phosphatase	family
POB3_N	PF17292.2	gi|529043442|ref|YP_008369661.1|	-	0.069	13.6	0.0	0.18	12.3	0.0	1.6	2	0	0	2	2	2	0	POB3-like	N-terminal	PH	domain
Mrr_cat	PF04471.12	gi|529043443|ref|YP_008369662.1|	-	2e-05	24.6	0.1	4e-05	23.6	0.0	1.6	2	0	0	2	2	2	1	Restriction	endonuclease
FdhD-NarQ	PF02634.15	gi|529043443|ref|YP_008369662.1|	-	0.06	13.0	0.0	0.13	11.9	0.0	1.5	1	0	0	1	1	1	0	FdhD/NarQ	family
Siva	PF05458.12	gi|529043444|ref|YP_008369663.1|	-	0.0074	16.0	6.0	0.0074	16.0	6.0	12.6	3	2	10	13	13	13	1	Cd27	binding	protein	(Siva)
Salt_tol_Pase	PF09506.10	gi|529043444|ref|YP_008369663.1|	-	0.13	11.0	0.0	0.22	10.2	0.0	1.2	1	0	0	1	1	1	0	Glucosylglycerol-phosphate	phosphatase	(Salt_tol_Pase)
ADIP	PF11559.8	gi|529043444|ref|YP_008369663.1|	-	0.43	10.7	18.3	0.75	9.9	18.3	1.3	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
FapA	PF03961.13	gi|529043444|ref|YP_008369663.1|	-	0.71	8.4	6.5	1.1	7.8	6.5	1.1	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
Syntaxin-6_N	PF09177.11	gi|529043444|ref|YP_008369663.1|	-	2.6	8.6	14.0	2.6e+02	2.3	14.0	2.4	1	1	0	1	1	1	0	Syntaxin	6,	N-terminal
ALMT	PF11744.8	gi|529043444|ref|YP_008369663.1|	-	3.6	6.3	7.3	4.9	5.9	7.3	1.1	1	0	0	1	1	1	0	Aluminium	activated	malate	transporter
Troponin	PF00992.20	gi|529043444|ref|YP_008369663.1|	-	6.1	7.2	17.5	11	6.3	17.5	1.4	1	0	0	1	1	1	0	Troponin
Exonuc_VII_L	PF02601.15	gi|529043444|ref|YP_008369663.1|	-	7.4	6.0	9.3	11	5.4	9.3	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
SNF2_N	PF00176.23	gi|529043445|ref|YP_008369664.1|	-	8.1e-29	100.4	0.1	1.8e-28	99.3	0.0	1.6	2	0	0	2	2	2	1	SNF2	family	N-terminal	domain
Helicase_C	PF00271.31	gi|529043445|ref|YP_008369664.1|	-	9.8e-19	67.7	0.6	3.5e-18	66.0	0.1	2.1	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|529043445|ref|YP_008369664.1|	-	1.3e-05	25.2	0.0	5.1e-05	23.3	0.0	2.0	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C_2	PF13307.6	gi|529043445|ref|YP_008369664.1|	-	0.014	15.5	0.4	0.43	10.7	0.1	2.4	1	1	1	2	2	2	0	Helicase	C-terminal	domain
IL13	PF03487.13	gi|529043445|ref|YP_008369664.1|	-	0.2	11.5	0.3	0.49	10.2	0.3	1.6	1	0	0	1	1	1	0	Interleukin-13
Ssu72	PF04722.13	gi|529043445|ref|YP_008369664.1|	-	0.83	9.2	5.4	2.1	7.9	0.3	3.1	3	1	0	3	3	3	0	Ssu72-like	protein
ResIII	PF04851.15	gi|529043446|ref|YP_008369665.1|	-	4.5e-20	72.3	0.0	1e-19	71.2	0.0	1.6	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|529043446|ref|YP_008369665.1|	-	1.6e-07	31.3	0.0	2.7e-07	30.5	0.0	1.4	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|529043446|ref|YP_008369665.1|	-	1.7e-05	25.1	0.0	8.9e-05	22.8	0.0	2.2	2	1	0	2	2	2	1	Helicase	conserved	C-terminal	domain
SWI2_SNF2	PF18766.1	gi|529043446|ref|YP_008369665.1|	-	0.0016	18.2	0.0	0.004	16.9	0.0	1.6	1	0	0	1	1	1	1	SWI2/SNF2	ATPase
ERCC3_RAD25_C	PF16203.5	gi|529043446|ref|YP_008369665.1|	-	0.0017	17.6	0.0	0.012	14.8	0.0	2.1	2	0	0	2	2	2	1	ERCC3/RAD25/XPB	C-terminal	helicase
DUF2075	PF09848.9	gi|529043446|ref|YP_008369665.1|	-	0.031	13.5	0.0	0.061	12.5	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
VWA	PF00092.28	gi|529043447|ref|YP_008369666.1|	-	9.1e-13	48.8	1.3	3.5e-12	46.9	1.3	1.9	1	1	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_2	PF13519.6	gi|529043447|ref|YP_008369666.1|	-	1.4e-12	48.2	0.1	3.5e-12	46.9	0.1	1.7	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
vWA-TerF-like	PF10138.9	gi|529043447|ref|YP_008369666.1|	-	1.8e-06	28.2	0.8	5.1e-05	23.5	0.8	2.2	1	1	0	1	1	1	1	vWA	found	in	TerF	C	terminus
VWA_3	PF13768.6	gi|529043447|ref|YP_008369666.1|	-	0.001	19.0	0.5	0.0038	17.2	0.1	2.0	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.14	gi|529043447|ref|YP_008369666.1|	-	0.0094	15.4	2.0	0.12	11.7	0.2	2.3	1	1	1	2	2	2	1	VWA	domain	containing	CoxE-like	protein
DUF1610	PF07754.11	gi|529043447|ref|YP_008369666.1|	-	0.0099	15.8	0.2	0.024	14.6	0.2	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1610)
Zn-ribbon_8	PF09723.10	gi|529043447|ref|YP_008369666.1|	-	0.65	10.2	3.1	4.2	7.6	0.2	2.5	2	0	0	2	2	2	0	Zinc	ribbon	domain
UvrD-helicase	PF00580.21	gi|529043448|ref|YP_008369667.1|	-	2.1e-44	152.4	0.9	2.1e-44	152.4	0.9	2.8	2	1	0	2	2	2	1	UvrD/REP	helicase	N-terminal	domain
AAA_19	PF13245.6	gi|529043448|ref|YP_008369667.1|	-	1.5e-26	93.5	0.2	4.9e-14	52.9	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
UvrD_C	PF13361.6	gi|529043448|ref|YP_008369667.1|	-	1.2e-14	54.5	0.3	8.2e-12	45.2	0.0	3.3	2	1	1	3	3	3	2	UvrD-like	helicase	C-terminal	domain
AAA_30	PF13604.6	gi|529043448|ref|YP_008369667.1|	-	1.4e-07	31.5	0.2	9.4e-05	22.2	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
AAA_12	PF13087.6	gi|529043448|ref|YP_008369667.1|	-	2e-06	27.5	0.0	5.9e-05	22.8	0.0	2.7	2	0	0	2	2	2	1	AAA	domain
UvrD_C_2	PF13538.6	gi|529043448|ref|YP_008369667.1|	-	2.1e-06	27.4	0.2	6.7e-05	22.6	0.2	2.7	1	1	0	1	1	1	1	UvrD-like	helicase	C-terminal	domain
Viral_helicase1	PF01443.18	gi|529043448|ref|YP_008369667.1|	-	0.011	15.5	0.1	1.6	8.4	0.1	3.8	2	1	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
ResIII	PF04851.15	gi|529043448|ref|YP_008369667.1|	-	0.019	15.0	0.0	0.062	13.3	0.0	1.9	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
YfdX	PF10938.8	gi|529043448|ref|YP_008369667.1|	-	0.051	13.5	0.2	0.45	10.4	0.1	2.4	2	0	0	2	2	2	0	YfdX	protein
YtxH	PF12732.7	gi|529043448|ref|YP_008369667.1|	-	1.3	9.6	3.1	1.5e+02	3.0	0.0	4.6	4	0	0	4	4	4	0	YtxH-like	protein
DUF2524	PF10732.9	gi|529043448|ref|YP_008369667.1|	-	3.6	7.9	8.9	3.6	8.0	0.2	4.1	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF2524)
ADP_ribosyl_GH	PF03747.14	gi|529043449|ref|YP_008369668.1|	-	2.5e-55	188.3	0.4	2.9e-55	188.1	0.4	1.0	1	0	0	1	1	1	1	ADP-ribosylglycohydrolase
Rick_17kDa_Anti	PF05433.15	gi|529043449|ref|YP_008369668.1|	-	0.028	14.3	2.3	0.053	13.4	2.3	1.5	1	0	0	1	1	1	0	Glycine	zipper	2TM	domain
SurE	PF01975.17	gi|529043449|ref|YP_008369668.1|	-	0.1	12.4	0.0	0.13	12.0	0.0	1.2	1	0	0	1	1	1	0	Survival	protein	SurE
YdjM	PF04307.14	gi|529043450|ref|YP_008369669.1|	-	1.2e-13	50.7	11.4	3.2e-13	49.3	11.4	1.6	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
OrfB_IS605	PF01385.19	gi|529043451|ref|YP_008369670.1|	-	7.4e-25	87.5	0.2	1.7e-24	86.3	0.0	1.7	2	0	0	2	2	2	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|529043451|ref|YP_008369670.1|	-	7.3e-21	73.9	4.1	9.9e-21	73.5	1.4	2.2	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
C1_2	PF03107.16	gi|529043451|ref|YP_008369670.1|	-	0.0065	16.8	1.1	0.017	15.4	1.1	1.7	1	0	0	1	1	1	1	C1	domain
A2L_zn_ribbon	PF08792.10	gi|529043451|ref|YP_008369670.1|	-	0.076	12.8	1.9	0.19	11.5	1.9	1.7	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|529043451|ref|YP_008369670.1|	-	0.09	12.3	7.2	0.13	11.8	5.5	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-C4_ClpX	PF06689.13	gi|529043451|ref|YP_008369670.1|	-	0.36	10.8	5.6	1.3	8.9	5.6	2.0	1	1	0	1	1	1	0	ClpX	C4-type	zinc	finger
Zn_Tnp_IS1595	PF12760.7	gi|529043451|ref|YP_008369670.1|	-	1.1	9.3	5.7	0.77	9.8	2.9	2.2	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
DDE_3	PF13358.6	gi|529043452|ref|YP_008369671.1|	-	3.4e-14	52.8	0.0	2.6e-13	50.0	0.0	2.1	2	0	0	2	2	2	1	DDE	superfamily	endonuclease
HTH_32	PF13565.6	gi|529043452|ref|YP_008369671.1|	-	3.5e-10	40.4	2.8	5.1e-10	39.8	0.1	2.5	2	1	1	3	3	3	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|529043452|ref|YP_008369671.1|	-	1.8e-09	37.5	0.0	4.5e-09	36.2	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|529043452|ref|YP_008369671.1|	-	2.8e-08	33.3	0.2	1.4e-07	31.1	0.0	2.2	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_33	PF13592.6	gi|529043452|ref|YP_008369671.1|	-	2.1e-06	27.3	0.0	9.6e-06	25.1	0.0	2.1	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|529043452|ref|YP_008369671.1|	-	5.3e-06	26.5	0.0	1.2e-05	25.3	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
DDE_1	PF03184.19	gi|529043452|ref|YP_008369671.1|	-	0.0012	18.6	0.0	0.002	17.8	0.0	1.3	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_7	PF02796.15	gi|529043452|ref|YP_008369671.1|	-	0.0051	16.9	0.2	0.015	15.3	0.1	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	resolvase
rve	PF00665.26	gi|529043452|ref|YP_008369671.1|	-	0.095	12.9	0.0	0.2	11.8	0.0	1.4	1	0	0	1	1	1	0	Integrase	core	domain
HTH_31	PF13560.6	gi|529043452|ref|YP_008369671.1|	-	0.1	13.0	0.1	0.42	11.0	0.1	2.0	1	1	0	1	1	1	0	Helix-turn-helix	domain
Mub_B2	PF17966.1	gi|529043456|ref|YP_008369675.1|	-	0.059	14.1	0.2	0.068	13.9	0.2	1.2	1	0	0	1	1	1	0	Mub	B2-like	domain
TrmB	PF01978.19	gi|529043458|ref|YP_008369677.1|	-	0.0081	16.0	0.0	0.014	15.2	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
FaeA	PF04703.12	gi|529043458|ref|YP_008369677.1|	-	0.0097	16.3	0.0	0.019	15.3	0.0	1.5	1	0	0	1	1	1	1	FaeA-like	protein
HTH_IclR	PF09339.10	gi|529043458|ref|YP_008369677.1|	-	0.1	12.4	0.0	0.22	11.4	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
DUF2951	PF11166.8	gi|529043458|ref|YP_008369677.1|	-	0.16	12.2	0.1	0.24	11.7	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2951)
DUF692	PF05114.13	gi|529043458|ref|YP_008369677.1|	-	0.18	11.0	0.0	0.24	10.6	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF692)
DUF3006	PF11213.8	gi|529043460|ref|YP_008369679.1|	-	6.2e-17	61.6	1.0	7.4e-17	61.3	1.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3006)
LTD	PF00932.19	gi|529043461|ref|YP_008369680.1|	-	1.5e-23	83.3	2.7	1.6e-23	83.2	0.4	2.3	3	0	0	3	3	3	1	Lamin	Tail	Domain
Lactamase_B	PF00753.27	gi|529043461|ref|YP_008369680.1|	-	5e-16	59.3	2.2	1.4e-15	57.8	2.2	1.8	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|529043461|ref|YP_008369680.1|	-	0.0038	16.8	0.7	0.017	14.6	0.1	2.2	3	0	0	3	3	3	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|529043461|ref|YP_008369680.1|	-	0.0067	15.9	0.0	0.012	15.1	0.0	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Nro1	PF12753.7	gi|529043463|ref|YP_008369682.1|	-	0.018	14.0	0.0	0.018	14.0	0.0	1.1	1	0	0	1	1	1	0	Nuclear	pore	complex	subunit	Nro1
UPF0236	PF06782.11	gi|529043464|ref|YP_008369683.1|	-	2.3e-06	26.5	0.0	0.00018	20.3	0.0	2.2	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|529043464|ref|YP_008369683.1|	-	0.0028	16.6	0.3	2.8	6.7	0.1	2.8	2	2	0	2	2	2	2	Transposase,	Mutator	family
DDE_Tnp_IS66	PF03050.14	gi|529043464|ref|YP_008369683.1|	-	0.0032	17.0	0.1	0.0046	16.5	0.1	1.2	1	0	0	1	1	1	1	Transposase	IS66	family
UPF0236	PF06782.11	gi|529043466|ref|YP_008369685.1|	-	2.3e-06	26.5	0.0	0.00018	20.3	0.0	2.2	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|529043466|ref|YP_008369685.1|	-	0.0028	16.6	0.3	2.8	6.7	0.1	2.8	2	2	0	2	2	2	2	Transposase,	Mutator	family
DDE_Tnp_IS66	PF03050.14	gi|529043466|ref|YP_008369685.1|	-	0.0032	17.0	0.1	0.0046	16.5	0.1	1.2	1	0	0	1	1	1	1	Transposase	IS66	family
HTH_20	PF12840.7	gi|529043467|ref|YP_008369686.1|	-	1.4e-11	44.3	0.2	2.2e-11	43.7	0.2	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|529043467|ref|YP_008369686.1|	-	3.8e-06	26.7	0.1	7.2e-06	25.8	0.1	1.5	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|529043467|ref|YP_008369686.1|	-	2.1e-05	24.9	0.0	3.5e-05	24.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|529043467|ref|YP_008369686.1|	-	9.5e-05	22.2	0.0	0.00015	21.6	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
TFIIE_alpha	PF02002.17	gi|529043467|ref|YP_008369686.1|	-	0.00015	21.6	0.0	0.00018	21.3	0.0	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_34	PF13601.6	gi|529043467|ref|YP_008369686.1|	-	0.0003	20.9	0.0	0.00044	20.4	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|529043467|ref|YP_008369686.1|	-	0.00062	19.6	0.0	0.0012	18.8	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|529043467|ref|YP_008369686.1|	-	0.0034	16.9	0.0	0.0057	16.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|529043467|ref|YP_008369686.1|	-	0.0071	16.2	0.0	0.011	15.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_micro	PF17007.5	gi|529043467|ref|YP_008369686.1|	-	0.0093	14.8	0.0	0.0094	14.8	0.0	1.0	1	0	0	1	1	1	1	HTH-like
B-block_TFIIIC	PF04182.12	gi|529043467|ref|YP_008369686.1|	-	0.011	15.9	0.0	0.018	15.2	0.0	1.3	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
DUF2513	PF10711.9	gi|529043467|ref|YP_008369686.1|	-	0.092	13.1	0.0	0.12	12.7	0.0	1.2	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
PIN	PF01850.21	gi|529043468|ref|YP_008369687.1|	-	6.6e-10	39.5	0.2	7.5e-10	39.4	0.2	1.0	1	0	0	1	1	1	1	PIN	domain
MazE_antitoxin	PF04014.18	gi|529043469|ref|YP_008369688.1|	-	3.1e-05	23.8	0.1	4.6e-05	23.2	0.1	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|529043469|ref|YP_008369688.1|	-	8e-05	23.0	0.0	0.00013	22.3	0.0	1.3	1	0	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
HTH_24	PF13412.6	gi|529043470|ref|YP_008369689.1|	-	0.011	15.3	0.2	0.017	14.7	0.2	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|529043470|ref|YP_008369689.1|	-	0.044	13.7	0.0	0.069	13.0	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DUF3549	PF12069.8	gi|529043470|ref|YP_008369689.1|	-	0.048	12.7	0.0	0.072	12.1	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3549)
HTH_20	PF12840.7	gi|529043470|ref|YP_008369689.1|	-	0.071	13.2	0.1	0.37	10.9	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
PLDc_N	PF13396.6	gi|529043472|ref|YP_008369691.1|	-	0.0012	18.7	1.5	0.0016	18.3	1.5	1.2	1	0	0	1	1	1	1	Phospholipase_D-nuclease	N-terminal
DUF1451	PF07295.11	gi|529043472|ref|YP_008369691.1|	-	0.0016	18.5	1.2	0.0017	18.4	1.2	1.1	1	0	0	1	1	1	1	Zinc-ribbon	containing	domain
Zn-ribbon_8	PF09723.10	gi|529043472|ref|YP_008369691.1|	-	0.0044	17.1	1.6	0.0077	16.3	1.6	1.4	1	0	0	1	1	1	1	Zinc	ribbon	domain
ADK_lid	PF05191.14	gi|529043472|ref|YP_008369691.1|	-	0.0078	16.2	2.2	0.015	15.3	2.2	1.4	1	0	0	1	1	1	1	Adenylate	kinase,	active	site	lid
Zn_Tnp_IS91	PF14319.6	gi|529043472|ref|YP_008369691.1|	-	0.019	15.0	0.6	0.022	14.8	0.6	1.1	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
zf-TFIIB	PF13453.6	gi|529043472|ref|YP_008369691.1|	-	0.034	13.5	2.6	0.091	12.1	2.5	1.7	1	1	1	2	2	2	0	Transcription	factor	zinc-finger
HypA	PF01155.19	gi|529043472|ref|YP_008369691.1|	-	0.04	14.0	0.7	0.046	13.8	0.7	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF4379	PF14311.6	gi|529043472|ref|YP_008369691.1|	-	0.15	12.4	1.0	0.21	12.0	1.0	1.3	1	0	0	1	1	1	0	Probable	Zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|529043472|ref|YP_008369691.1|	-	0.22	11.1	3.1	0.36	10.4	3.1	1.4	1	0	0	1	1	1	0	TFIIB	zinc-binding
Nudix_N_2	PF14803.6	gi|529043472|ref|YP_008369691.1|	-	0.33	10.9	3.7	13	5.9	0.2	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
zf-C2HC_2	PF13913.6	gi|529043473|ref|YP_008369692.1|	-	0.018	15.0	1.6	0.1	12.5	1.6	2.2	1	1	0	1	1	1	0	zinc-finger	of	a	C2HC-type
RNase_H_2	PF13482.6	gi|529043474|ref|YP_008369693.1|	-	3.8e-07	30.3	0.1	0.00019	21.5	0.0	2.6	1	1	1	2	2	2	2	RNase_H	superfamily
DNA_pol_B_exo2	PF10108.9	gi|529043474|ref|YP_008369693.1|	-	0.012	15.4	0.0	0.017	14.8	0.0	1.3	1	0	0	1	1	1	0	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
AAA_22	PF13401.6	gi|529043475|ref|YP_008369694.1|	-	5e-14	52.7	0.0	1.2e-13	51.6	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
Cdc6_C	PF09079.11	gi|529043475|ref|YP_008369694.1|	-	1e-09	38.2	0.1	5.6e-09	35.9	0.0	2.2	1	1	1	2	2	2	1	CDC6,	C	terminal	winged	helix	domain
AAA_16	PF13191.6	gi|529043475|ref|YP_008369694.1|	-	9e-09	35.9	1.0	9e-08	32.7	0.1	2.7	2	2	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|529043475|ref|YP_008369694.1|	-	5.5e-06	26.8	0.1	1.8e-05	25.2	0.0	1.9	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
TniB	PF05621.11	gi|529043475|ref|YP_008369694.1|	-	0.0011	18.5	0.0	0.0018	17.7	0.0	1.3	1	0	0	1	1	1	1	Bacterial	TniB	protein
NACHT	PF05729.12	gi|529043475|ref|YP_008369694.1|	-	0.0014	18.6	0.0	0.0025	17.7	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
ATPase_2	PF01637.18	gi|529043475|ref|YP_008369694.1|	-	0.0015	18.5	0.0	0.0036	17.3	0.0	1.6	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
DEAD	PF00270.29	gi|529043475|ref|YP_008369694.1|	-	0.039	13.7	0.4	0.5	10.1	0.4	2.3	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
AAA_16	PF13191.6	gi|529043476|ref|YP_008369695.1|	-	2e-12	47.8	0.1	8.2e-12	45.8	0.1	2.1	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|529043476|ref|YP_008369695.1|	-	1.5e-10	41.6	0.0	8.4e-10	39.2	0.0	2.3	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Cdc6_C	PF09079.11	gi|529043476|ref|YP_008369695.1|	-	5.3e-10	39.1	0.2	2.5e-09	37.0	0.0	2.3	2	0	0	2	2	2	1	CDC6,	C	terminal	winged	helix	domain
DUF815	PF05673.13	gi|529043476|ref|YP_008369695.1|	-	2.9e-05	23.4	0.0	5.7e-05	22.4	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_22	PF13401.6	gi|529043476|ref|YP_008369695.1|	-	3e-05	24.3	0.0	8.8e-05	22.8	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
ATPase_2	PF01637.18	gi|529043476|ref|YP_008369695.1|	-	6e-05	23.1	0.0	0.00019	21.4	0.0	1.9	2	1	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
Sigma54_activat	PF00158.26	gi|529043476|ref|YP_008369695.1|	-	0.0022	17.7	0.0	0.0049	16.6	0.0	1.6	1	0	0	1	1	1	1	Sigma-54	interaction	domain
TniB	PF05621.11	gi|529043476|ref|YP_008369695.1|	-	0.0024	17.3	0.0	0.017	14.6	0.0	2.1	1	1	0	1	1	1	1	Bacterial	TniB	protein
AAA_18	PF13238.6	gi|529043476|ref|YP_008369695.1|	-	0.0029	18.2	0.0	0.012	16.2	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
RNA_helicase	PF00910.22	gi|529043476|ref|YP_008369695.1|	-	0.0036	17.7	0.1	0.024	15.0	0.0	2.4	3	0	0	3	3	3	1	RNA	helicase
AAA_5	PF07728.14	gi|529043476|ref|YP_008369695.1|	-	0.013	15.5	0.1	0.092	12.7	0.1	2.3	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Mg_chelatase	PF01078.21	gi|529043476|ref|YP_008369695.1|	-	0.015	14.6	0.0	0.035	13.5	0.0	1.6	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
ABC_tran	PF00005.27	gi|529043476|ref|YP_008369695.1|	-	0.024	15.2	0.0	0.072	13.6	0.0	1.9	2	1	0	2	2	2	0	ABC	transporter
NACHT	PF05729.12	gi|529043476|ref|YP_008369695.1|	-	0.027	14.4	0.0	0.098	12.6	0.0	1.8	1	1	0	1	1	1	0	NACHT	domain
PIF1	PF05970.14	gi|529043476|ref|YP_008369695.1|	-	0.034	13.3	0.0	0.053	12.7	0.0	1.4	1	0	0	1	1	1	0	PIF1-like	helicase
AAA_7	PF12775.7	gi|529043476|ref|YP_008369695.1|	-	0.036	13.6	0.0	0.086	12.4	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
IstB_IS21	PF01695.17	gi|529043476|ref|YP_008369695.1|	-	0.052	13.3	0.0	0.15	11.8	0.0	1.7	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
NB-ARC	PF00931.22	gi|529043476|ref|YP_008369695.1|	-	0.063	12.5	0.0	1.3	8.1	0.0	2.2	2	0	0	2	2	2	0	NB-ARC	domain
Sigma54_activ_2	PF14532.6	gi|529043476|ref|YP_008369695.1|	-	0.072	13.2	0.0	0.14	12.2	0.0	1.5	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_25	PF13481.6	gi|529043476|ref|YP_008369695.1|	-	0.088	12.4	1.7	0.36	10.4	0.3	2.5	2	1	0	2	2	2	0	AAA	domain
DDE_Tnp_IS66	PF03050.14	gi|529043477|ref|YP_008369696.1|	-	4.8e-49	167.3	0.1	4.8e-49	167.3	0.1	1.6	2	0	0	2	2	2	1	Transposase	IS66	family
zf-IS66	PF13005.7	gi|529043477|ref|YP_008369696.1|	-	7.4e-06	26.3	2.6	2.1e-05	24.8	2.6	1.8	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
GAS	PF13851.6	gi|529043477|ref|YP_008369696.1|	-	0.00063	19.2	4.5	0.0012	18.2	4.5	1.3	1	0	0	1	1	1	1	Growth-arrest	specific	micro-tubule	binding
bZIP_1	PF00170.21	gi|529043477|ref|YP_008369696.1|	-	0.0022	18.0	4.7	0.005	16.9	4.7	1.6	1	0	0	1	1	1	1	bZIP	transcription	factor
Csm1_N	PF18504.1	gi|529043477|ref|YP_008369696.1|	-	0.0048	17.2	2.4	0.013	15.8	2.4	1.7	1	0	0	1	1	1	1	Csm1	N-terminal	domain
ATG16	PF08614.11	gi|529043477|ref|YP_008369696.1|	-	0.0062	16.8	2.2	0.0062	16.8	2.2	2.4	3	0	0	3	3	2	1	Autophagy	protein	16	(ATG16)
CENP-F_leu_zip	PF10473.9	gi|529043477|ref|YP_008369696.1|	-	0.0065	16.5	7.2	0.017	15.2	7.2	1.6	1	0	0	1	1	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Tropomyosin_1	PF12718.7	gi|529043477|ref|YP_008369696.1|	-	0.0075	16.4	3.9	0.016	15.3	3.9	1.5	1	0	0	1	1	1	1	Tropomyosin	like
Angiomotin_C	PF12240.8	gi|529043477|ref|YP_008369696.1|	-	0.01	15.4	0.4	0.019	14.5	0.4	1.4	1	0	0	1	1	1	0	Angiomotin	C	terminal
MCC-bdg_PDZ	PF10506.9	gi|529043477|ref|YP_008369696.1|	-	0.03	14.3	3.2	0.077	13.0	3.2	1.7	1	0	0	1	1	1	0	PDZ	domain	of	MCC-2	bdg	protein	for	Usher	syndrome
Troponin	PF00992.20	gi|529043477|ref|YP_008369696.1|	-	0.058	13.7	5.3	0.049	13.9	3.5	1.9	2	0	0	2	2	1	0	Troponin
Nsp1_C	PF05064.13	gi|529043477|ref|YP_008369696.1|	-	0.067	13.0	1.4	0.14	11.9	1.4	1.5	1	0	0	1	1	1	0	Nsp1-like	C-terminal	region
zf-FPG_IleRS	PF06827.14	gi|529043477|ref|YP_008369696.1|	-	0.07	13.0	2.8	7.3	6.6	0.1	3.2	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
BID	PF06393.11	gi|529043477|ref|YP_008369696.1|	-	0.082	12.4	1.6	0.091	12.3	0.0	1.8	2	0	0	2	2	2	0	BH3	interacting	domain	(BID)
TMF_TATA_bd	PF12325.8	gi|529043477|ref|YP_008369696.1|	-	0.085	13.1	8.3	0.24	11.6	8.3	1.7	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
Shugoshin_N	PF07558.11	gi|529043477|ref|YP_008369696.1|	-	0.12	12.2	1.2	0.29	11.0	1.2	1.6	1	0	0	1	1	1	0	Shugoshin	N-terminal	coiled-coil	region
Phage_GP20	PF06810.11	gi|529043477|ref|YP_008369696.1|	-	0.13	12.1	2.4	0.27	11.0	2.4	1.5	1	0	0	1	1	1	0	Phage	minor	structural	protein	GP20
SOUL	PF04832.12	gi|529043477|ref|YP_008369696.1|	-	0.14	12.3	0.1	0.27	11.4	0.1	1.4	1	0	0	1	1	1	0	SOUL	heme-binding	protein
YabA	PF06156.13	gi|529043477|ref|YP_008369696.1|	-	0.19	12.4	3.0	0.17	12.5	1.5	1.8	2	0	0	2	2	1	0	Initiation	control	protein	YabA
DDE_Tnp_IS240	PF13610.6	gi|529043477|ref|YP_008369696.1|	-	0.22	11.8	2.3	0.32	11.2	0.1	2.3	2	1	0	2	2	2	0	DDE	domain
Spc7	PF08317.11	gi|529043477|ref|YP_008369696.1|	-	0.51	9.2	6.7	0.31	9.9	2.6	2.0	2	0	0	2	2	2	0	Spc7	kinetochore	protein
TolA_bind_tri	PF16331.5	gi|529043477|ref|YP_008369696.1|	-	0.57	10.3	10.7	0.4	10.8	7.1	2.3	2	0	0	2	2	2	0	TolA	binding	protein	trimerisation
PKcGMP_CC	PF16808.5	gi|529043477|ref|YP_008369696.1|	-	0.9	9.4	14.7	0.12	12.3	4.8	2.8	1	1	1	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
Zn-ribbon_8	PF09723.10	gi|529043477|ref|YP_008369696.1|	-	1.2	9.3	5.4	19	5.5	0.2	2.7	2	0	0	2	2	2	0	Zinc	ribbon	domain
MPS2	PF17060.5	gi|529043477|ref|YP_008369696.1|	-	1.6	7.9	4.1	3.2	6.9	4.1	1.4	1	0	0	1	1	1	0	Monopolar	spindle	protein	2
APC_N_CC	PF16689.5	gi|529043477|ref|YP_008369696.1|	-	1.7	8.8	6.1	4.5	7.4	6.1	1.7	1	0	0	1	1	1	0	Coiled-coil	N-terminus	of	APC,	dimerisation	domain
DivIC	PF04977.15	gi|529043477|ref|YP_008369696.1|	-	2.3	8.0	9.8	0.29	10.9	4.5	2.2	2	0	0	2	2	2	0	Septum	formation	initiator
DUF4407	PF14362.6	gi|529043477|ref|YP_008369696.1|	-	2.5	7.4	5.1	0.54	9.6	1.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
UPF0242	PF06785.11	gi|529043477|ref|YP_008369696.1|	-	2.8	8.0	6.5	5	7.2	6.5	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
bZIP_2	PF07716.15	gi|529043477|ref|YP_008369696.1|	-	3.2	7.9	11.9	0.74	10.0	7.5	2.4	2	1	0	2	2	1	0	Basic	region	leucine	zipper
Rubredoxin_2	PF18073.1	gi|529043477|ref|YP_008369696.1|	-	3.3	7.5	6.0	4.7	7.0	0.3	2.6	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
TSC22	PF01166.18	gi|529043477|ref|YP_008369696.1|	-	5.2	7.5	8.4	21	5.5	4.9	3.2	2	1	1	3	3	3	0	TSC-22/dip/bun	family
BPD_transp_1	PF00528.22	gi|529043478|ref|YP_008369697.1|	-	4.7e-19	68.8	15.8	5.6e-19	68.6	15.8	1.1	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|529043480|ref|YP_008369699.1|	-	2.6e-15	57.1	0.0	5.1e-15	56.2	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
TOBE	PF03459.17	gi|529043480|ref|YP_008369699.1|	-	3.2e-09	36.9	0.2	1.2e-07	31.9	0.0	2.4	2	0	0	2	2	2	1	TOBE	domain
TOBE_2	PF08402.10	gi|529043480|ref|YP_008369699.1|	-	9.3e-08	32.1	0.1	1.1e-06	28.7	0.0	2.5	2	0	0	2	2	2	1	TOBE	domain
AAA_21	PF13304.6	gi|529043480|ref|YP_008369699.1|	-	0.0032	17.3	0.5	0.0051	16.7	0.5	1.2	1	0	0	1	1	1	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TOBE_3	PF12857.7	gi|529043480|ref|YP_008369699.1|	-	0.012	15.5	0.0	0.037	13.9	0.0	1.8	1	0	0	1	1	1	0	TOBE-like	domain
RNase_II_C_S1	PF18614.1	gi|529043480|ref|YP_008369699.1|	-	0.05	13.5	0.9	0.3	11.0	0.0	2.6	2	0	0	2	2	2	0	RNase	II-type	exonuclease	C-terminal	S1	domain
DUF3971	PF13116.6	gi|529043480|ref|YP_008369699.1|	-	0.055	13.0	0.0	0.08	12.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function
S1	PF00575.23	gi|529043480|ref|YP_008369699.1|	-	0.15	12.4	0.2	1.3	9.4	0.0	2.3	3	0	0	3	3	3	0	S1	RNA	binding	domain
DUF2109	PF09882.9	gi|529043481|ref|YP_008369700.1|	-	0.017	15.1	1.5	0.019	14.9	1.5	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2109)
SPC12	PF06645.13	gi|529043481|ref|YP_008369700.1|	-	2.3	8.4	6.9	2.5	8.2	0.6	2.0	1	1	1	2	2	2	0	Microsomal	signal	peptidase	12	kDa	subunit	(SPC12)
COX1	PF00115.20	gi|529043482|ref|YP_008369701.1|	-	0.00018	20.5	10.4	0.00018	20.5	10.4	4.1	2	1	1	4	4	4	3	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
DUF2249	PF10006.9	gi|529043484|ref|YP_008369703.1|	-	1.5e-25	88.8	0.9	1.6e-25	88.7	0.9	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
TusA	PF01206.17	gi|529043484|ref|YP_008369703.1|	-	0.016	15.0	0.0	0.019	14.8	0.0	1.3	1	1	0	1	1	1	0	Sulfurtransferase	TusA
MOSC_N	PF03476.16	gi|529043485|ref|YP_008369704.1|	-	1.1e-14	54.3	0.0	2.6e-14	53.1	0.0	1.6	1	0	0	1	1	1	1	MOSC	N-terminal	beta	barrel	domain
MOSC	PF03473.17	gi|529043485|ref|YP_008369704.1|	-	1.4e-05	25.1	0.0	2.2e-05	24.5	0.0	1.3	1	0	0	1	1	1	1	MOSC	domain
CMD	PF02627.20	gi|529043486|ref|YP_008369705.1|	-	4.5e-09	36.2	0.0	5.8e-09	35.9	0.0	1.1	1	0	0	1	1	1	1	Carboxymuconolactone	decarboxylase	family
DDE_Tnp_IS66	PF03050.14	gi|529043488|ref|YP_008369707.1|	-	4.8e-49	167.3	0.1	4.8e-49	167.3	0.1	1.6	2	0	0	2	2	2	1	Transposase	IS66	family
zf-IS66	PF13005.7	gi|529043488|ref|YP_008369707.1|	-	7.4e-06	26.3	2.6	2.1e-05	24.8	2.6	1.8	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
GAS	PF13851.6	gi|529043488|ref|YP_008369707.1|	-	0.00063	19.2	4.5	0.0012	18.2	4.5	1.3	1	0	0	1	1	1	1	Growth-arrest	specific	micro-tubule	binding
bZIP_1	PF00170.21	gi|529043488|ref|YP_008369707.1|	-	0.0022	18.0	4.7	0.005	16.9	4.7	1.6	1	0	0	1	1	1	1	bZIP	transcription	factor
Csm1_N	PF18504.1	gi|529043488|ref|YP_008369707.1|	-	0.0048	17.2	2.4	0.013	15.8	2.4	1.7	1	0	0	1	1	1	1	Csm1	N-terminal	domain
ATG16	PF08614.11	gi|529043488|ref|YP_008369707.1|	-	0.0062	16.8	2.2	0.0062	16.8	2.2	2.4	3	0	0	3	3	2	1	Autophagy	protein	16	(ATG16)
CENP-F_leu_zip	PF10473.9	gi|529043488|ref|YP_008369707.1|	-	0.0065	16.5	7.2	0.017	15.2	7.2	1.6	1	0	0	1	1	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Tropomyosin_1	PF12718.7	gi|529043488|ref|YP_008369707.1|	-	0.0075	16.4	3.9	0.016	15.3	3.9	1.5	1	0	0	1	1	1	1	Tropomyosin	like
Angiomotin_C	PF12240.8	gi|529043488|ref|YP_008369707.1|	-	0.01	15.4	0.4	0.019	14.5	0.4	1.4	1	0	0	1	1	1	0	Angiomotin	C	terminal
MCC-bdg_PDZ	PF10506.9	gi|529043488|ref|YP_008369707.1|	-	0.03	14.3	3.2	0.077	13.0	3.2	1.7	1	0	0	1	1	1	0	PDZ	domain	of	MCC-2	bdg	protein	for	Usher	syndrome
Troponin	PF00992.20	gi|529043488|ref|YP_008369707.1|	-	0.058	13.7	5.3	0.049	13.9	3.5	1.9	2	0	0	2	2	1	0	Troponin
Nsp1_C	PF05064.13	gi|529043488|ref|YP_008369707.1|	-	0.067	13.0	1.4	0.14	11.9	1.4	1.5	1	0	0	1	1	1	0	Nsp1-like	C-terminal	region
zf-FPG_IleRS	PF06827.14	gi|529043488|ref|YP_008369707.1|	-	0.07	13.0	2.8	7.3	6.6	0.1	3.2	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
BID	PF06393.11	gi|529043488|ref|YP_008369707.1|	-	0.082	12.4	1.6	0.091	12.3	0.0	1.8	2	0	0	2	2	2	0	BH3	interacting	domain	(BID)
TMF_TATA_bd	PF12325.8	gi|529043488|ref|YP_008369707.1|	-	0.085	13.1	8.3	0.24	11.6	8.3	1.7	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
Shugoshin_N	PF07558.11	gi|529043488|ref|YP_008369707.1|	-	0.12	12.2	1.2	0.29	11.0	1.2	1.6	1	0	0	1	1	1	0	Shugoshin	N-terminal	coiled-coil	region
Phage_GP20	PF06810.11	gi|529043488|ref|YP_008369707.1|	-	0.13	12.1	2.4	0.27	11.0	2.4	1.5	1	0	0	1	1	1	0	Phage	minor	structural	protein	GP20
SOUL	PF04832.12	gi|529043488|ref|YP_008369707.1|	-	0.14	12.3	0.1	0.27	11.4	0.1	1.4	1	0	0	1	1	1	0	SOUL	heme-binding	protein
YabA	PF06156.13	gi|529043488|ref|YP_008369707.1|	-	0.19	12.4	3.0	0.17	12.5	1.5	1.8	2	0	0	2	2	1	0	Initiation	control	protein	YabA
DDE_Tnp_IS240	PF13610.6	gi|529043488|ref|YP_008369707.1|	-	0.22	11.8	2.3	0.32	11.2	0.1	2.3	2	1	0	2	2	2	0	DDE	domain
Spc7	PF08317.11	gi|529043488|ref|YP_008369707.1|	-	0.51	9.2	6.7	0.31	9.9	2.6	2.0	2	0	0	2	2	2	0	Spc7	kinetochore	protein
TolA_bind_tri	PF16331.5	gi|529043488|ref|YP_008369707.1|	-	0.57	10.3	10.7	0.4	10.8	7.1	2.3	2	0	0	2	2	2	0	TolA	binding	protein	trimerisation
PKcGMP_CC	PF16808.5	gi|529043488|ref|YP_008369707.1|	-	0.9	9.4	14.7	0.12	12.3	4.8	2.8	1	1	1	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
Zn-ribbon_8	PF09723.10	gi|529043488|ref|YP_008369707.1|	-	1.2	9.3	5.4	19	5.5	0.2	2.7	2	0	0	2	2	2	0	Zinc	ribbon	domain
MPS2	PF17060.5	gi|529043488|ref|YP_008369707.1|	-	1.6	7.9	4.1	3.2	6.9	4.1	1.4	1	0	0	1	1	1	0	Monopolar	spindle	protein	2
APC_N_CC	PF16689.5	gi|529043488|ref|YP_008369707.1|	-	1.7	8.8	6.1	4.5	7.4	6.1	1.7	1	0	0	1	1	1	0	Coiled-coil	N-terminus	of	APC,	dimerisation	domain
DivIC	PF04977.15	gi|529043488|ref|YP_008369707.1|	-	2.3	8.0	9.8	0.29	10.9	4.5	2.2	2	0	0	2	2	2	0	Septum	formation	initiator
DUF4407	PF14362.6	gi|529043488|ref|YP_008369707.1|	-	2.5	7.4	5.1	0.54	9.6	1.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
UPF0242	PF06785.11	gi|529043488|ref|YP_008369707.1|	-	2.8	8.0	6.5	5	7.2	6.5	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
bZIP_2	PF07716.15	gi|529043488|ref|YP_008369707.1|	-	3.2	7.9	11.9	0.74	10.0	7.5	2.4	2	1	0	2	2	1	0	Basic	region	leucine	zipper
Rubredoxin_2	PF18073.1	gi|529043488|ref|YP_008369707.1|	-	3.3	7.5	6.0	4.7	7.0	0.3	2.6	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
TSC22	PF01166.18	gi|529043488|ref|YP_008369707.1|	-	5.2	7.5	8.4	21	5.5	4.9	3.2	2	1	1	3	3	3	0	TSC-22/dip/bun	family
HisKA_4TM	PF16926.5	gi|529043491|ref|YP_008369710.1|	-	1.2e-51	174.5	4.4	1.8e-51	174.0	4.4	1.2	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
HATPase_c	PF02518.26	gi|529043491|ref|YP_008369710.1|	-	4.1e-19	69.1	0.0	8.6e-19	68.1	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|529043491|ref|YP_008369710.1|	-	6.1e-08	32.7	0.2	1.1e-07	31.8	0.2	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.6	gi|529043491|ref|YP_008369710.1|	-	3.5e-05	23.6	0.0	7e-05	22.7	0.0	1.4	1	0	0	1	1	1	1	GHKL	domain
HisKA	PF00512.25	gi|529043491|ref|YP_008369710.1|	-	0.0062	16.5	0.2	0.013	15.5	0.2	1.6	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HisKA_2	PF07568.12	gi|529043491|ref|YP_008369710.1|	-	0.038	14.1	0.0	0.078	13.1	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase
Acyl_transf_3	PF01757.22	gi|529043491|ref|YP_008369710.1|	-	0.055	12.5	3.0	0.074	12.1	3.0	1.1	1	0	0	1	1	1	0	Acyltransferase	family
HATPase_c_3	PF13589.6	gi|529043491|ref|YP_008369710.1|	-	0.16	11.8	0.5	0.29	11.0	0.1	1.6	2	0	0	2	2	2	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
LapA_dom	PF06305.11	gi|529043491|ref|YP_008369710.1|	-	0.53	10.1	2.7	9.3	6.2	0.0	3.0	3	0	0	3	3	3	0	Lipopolysaccharide	assembly	protein	A	domain
Lactamase_B	PF00753.27	gi|529043492|ref|YP_008369711.1|	-	4.6e-16	59.4	0.5	1.5e-13	51.2	0.1	2.6	2	0	0	2	2	2	2	Metallo-beta-lactamase	superfamily
Beta-Casp	PF10996.8	gi|529043492|ref|YP_008369711.1|	-	4.6e-14	52.6	0.0	8.3e-14	51.8	0.0	1.4	1	0	0	1	1	1	1	Beta-Casp	domain
Lactamase_B_2	PF12706.7	gi|529043492|ref|YP_008369711.1|	-	1.3e-11	44.4	2.3	2.2e-10	40.4	0.9	2.9	3	0	0	3	3	3	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|529043492|ref|YP_008369711.1|	-	2.4e-10	40.2	0.0	4.1e-10	39.4	0.0	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
RMMBL	PF07521.12	gi|529043492|ref|YP_008369711.1|	-	1.8e-09	37.4	0.0	4.5e-09	36.1	0.0	1.7	1	0	0	1	1	1	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
PDEase_II	PF02112.15	gi|529043492|ref|YP_008369711.1|	-	0.12	11.5	0.0	0.2	10.8	0.0	1.3	1	0	0	1	1	1	0	cAMP	phosphodiesterases	class-II
Lactamase_B_3	PF13483.6	gi|529043492|ref|YP_008369711.1|	-	0.13	12.2	0.0	0.23	11.3	0.0	1.5	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
Y_Y_Y	PF07495.13	gi|529043494|ref|YP_008369713.1|	-	0.0041	17.0	0.0	0.0072	16.3	0.0	1.5	1	0	0	1	1	1	1	Y_Y_Y	domain
AAA_31	PF13614.6	gi|529043495|ref|YP_008369714.1|	-	3.2e-36	124.9	0.0	3.9e-36	124.6	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|529043495|ref|YP_008369714.1|	-	1.7e-17	63.7	0.0	2.1e-17	63.4	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|529043495|ref|YP_008369714.1|	-	4.6e-07	29.5	0.5	1.9e-06	27.5	0.5	2.0	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CBP_BcsQ	PF06564.12	gi|529043495|ref|YP_008369714.1|	-	3.7e-06	26.6	0.0	7.9e-06	25.5	0.0	1.5	1	1	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
MipZ	PF09140.11	gi|529043495|ref|YP_008369714.1|	-	5.4e-06	25.9	0.8	3.8e-05	23.1	0.8	2.1	1	1	0	1	1	1	1	ATPase	MipZ
Fer4_NifH	PF00142.18	gi|529043495|ref|YP_008369714.1|	-	8e-05	22.2	0.1	0.0094	15.4	0.0	2.1	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
ArsA_ATPase	PF02374.15	gi|529043495|ref|YP_008369714.1|	-	0.0039	16.4	0.1	0.0093	15.2	0.0	1.6	2	0	0	2	2	2	1	Anion-transporting	ATPase
VirC1	PF07015.11	gi|529043495|ref|YP_008369714.1|	-	0.12	11.7	0.0	0.53	9.5	0.0	1.9	2	0	0	2	2	2	0	VirC1	protein
Prefoldin	PF02996.17	gi|529043496|ref|YP_008369715.1|	-	0.095	12.6	3.1	1.6	8.6	3.1	2.2	1	1	0	1	1	1	0	Prefoldin	subunit
RRN3	PF05327.11	gi|529043496|ref|YP_008369715.1|	-	3	6.3	9.1	3.5	6.1	9.1	1.1	1	0	0	1	1	1	0	RNA	polymerase	I	specific	transcription	initiation	factor	RRN3
MazE_antitoxin	PF04014.18	gi|529043497|ref|YP_008369716.1|	-	1.2e-06	28.3	0.1	1.7e-06	27.8	0.1	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
OrfB_IS605	PF01385.19	gi|529043498|ref|YP_008369717.1|	-	1.8e-29	102.4	0.4	2.9e-29	101.7	0.4	1.3	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|529043498|ref|YP_008369717.1|	-	2.2e-19	69.1	0.2	3.9e-19	68.3	0.2	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.12	gi|529043498|ref|YP_008369717.1|	-	0.32	10.5	3.3	0.65	9.6	3.3	1.5	1	0	0	1	1	1	0	TFIIB	zinc-binding
PIN	PF01850.21	gi|529043499|ref|YP_008369718.1|	-	5.3e-10	39.9	0.0	6.2e-10	39.6	0.0	1.1	1	0	0	1	1	1	1	PIN	domain
GreA_GreB_N	PF03449.15	gi|529043499|ref|YP_008369718.1|	-	0.048	13.8	0.4	7.1	6.9	0.0	2.3	2	0	0	2	2	2	0	Transcription	elongation	factor,	N-terminal
YqzH	PF14164.6	gi|529043501|ref|YP_008369720.1|	-	0.11	12.6	0.0	0.11	12.6	0.0	3.0	4	0	0	4	4	4	0	YqzH-like	protein
FlaC_arch	PF05377.11	gi|529043501|ref|YP_008369720.1|	-	0.12	12.8	1.4	0.74	10.3	0.6	2.4	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
TSC22	PF01166.18	gi|529043501|ref|YP_008369720.1|	-	0.29	11.5	2.9	0.45	10.9	0.7	2.2	2	0	0	2	2	2	0	TSC-22/dip/bun	family
HicA_toxin	PF07927.12	gi|529043503|ref|YP_008369722.1|	-	0.021	14.8	0.0	0.024	14.7	0.0	1.1	1	0	0	1	1	1	0	HicA	toxin	of	bacterial	toxin-antitoxin,
DUF2249	PF10006.9	gi|529043505|ref|YP_008369724.1|	-	0.015	15.2	0.2	0.016	15.1	0.2	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2249)
Terminase_GpA	PF05876.12	gi|529043506|ref|YP_008369725.1|	-	0.0012	17.5	0.2	0.0012	17.5	0.2	1.0	1	0	0	1	1	1	1	Phage	terminase	large	subunit	(GpA)
Rubredoxin_2	PF18073.1	gi|529043506|ref|YP_008369725.1|	-	0.0051	16.5	1.3	0.048	13.4	0.0	2.2	2	0	0	2	2	2	1	Rubredoxin	metal	binding	domain
zf-Di19	PF05605.12	gi|529043506|ref|YP_008369725.1|	-	0.014	15.6	0.1	0.023	15.0	0.1	1.3	1	1	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
XPA_N	PF01286.18	gi|529043506|ref|YP_008369725.1|	-	0.025	14.6	1.2	0.17	12.0	0.0	2.0	2	0	0	2	2	2	0	XPA	protein	N-terminal
FANCL_C	PF11793.8	gi|529043506|ref|YP_008369725.1|	-	0.051	13.8	1.4	2.1	8.6	0.1	2.1	1	1	1	2	2	2	0	FANCL	C-terminal	domain
zf-ribbon_3	PF13248.6	gi|529043506|ref|YP_008369725.1|	-	0.055	12.9	2.0	0.84	9.1	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-H2C2_2	PF13465.6	gi|529043506|ref|YP_008369725.1|	-	0.099	13.1	0.2	21	5.8	0.0	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-C2H2	PF00096.26	gi|529043506|ref|YP_008369725.1|	-	0.1	13.1	1.3	0.35	11.4	0.0	2.0	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
DUF4428	PF14471.6	gi|529043506|ref|YP_008369725.1|	-	0.14	12.1	0.6	1.9	8.5	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4428)
DiS_P_DiS	PF06750.13	gi|529043506|ref|YP_008369725.1|	-	0.14	12.3	0.4	0.44	10.7	0.0	1.8	1	1	1	2	2	2	0	Bacterial	Peptidase	A24	N-terminal	domain
zf_UBZ	PF18439.1	gi|529043506|ref|YP_008369725.1|	-	0.16	11.6	0.8	0.42	10.3	0.0	1.9	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
DNA_ligase_ZBD	PF03119.16	gi|529043506|ref|YP_008369725.1|	-	0.17	11.9	4.7	3.1	7.9	0.1	2.2	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
PADR1	PF08063.12	gi|529043506|ref|YP_008369725.1|	-	0.18	11.6	2.6	5.1	7.0	2.6	2.1	1	1	0	1	1	1	0	PADR1	(NUC008)	domain
Zn-ribbon_8	PF09723.10	gi|529043506|ref|YP_008369725.1|	-	0.77	9.9	4.6	1.6	8.9	0.3	2.1	1	1	1	2	2	2	0	Zinc	ribbon	domain
Phage_int_SAM_5	PF13102.6	gi|529043507|ref|YP_008369726.1|	-	1.9e-06	28.1	0.0	5.9e-06	26.5	0.0	1.8	1	1	0	1	1	1	1	Phage	integrase	SAM-like	domain
Phage_integrase	PF00589.22	gi|529043507|ref|YP_008369726.1|	-	0.0015	18.3	0.0	0.014	15.1	0.0	2.2	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|529043507|ref|YP_008369726.1|	-	0.0023	18.2	1.3	0.023	15.0	0.1	3.0	3	0	0	3	3	3	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|529043507|ref|YP_008369726.1|	-	0.035	14.6	0.0	0.081	13.4	0.0	1.6	1	0	0	1	1	1	0	Phage	integrase,	N-terminal	SAM-like	domain
DNA_pol_A	PF00476.20	gi|529043508|ref|YP_008369727.1|	-	0.046	12.8	0.0	0.051	12.6	0.0	1.1	1	0	0	1	1	1	0	DNA	polymerase	family	A
Golgin_A5	PF09787.9	gi|529043508|ref|YP_008369727.1|	-	0.061	12.8	1.3	0.066	12.7	1.3	1.0	1	0	0	1	1	1	0	Golgin	subfamily	A	member	5
DUF2721	PF11026.8	gi|529043508|ref|YP_008369727.1|	-	0.19	11.6	1.6	1	9.2	1.6	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2721)
PspB	PF06667.12	gi|529043508|ref|YP_008369727.1|	-	0.52	10.4	2.8	1.4	9.0	0.2	2.1	2	0	0	2	2	2	0	Phage	shock	protein	B
DDE_5	PF13546.6	gi|529043510|ref|YP_008369729.1|	-	6.2e-22	78.2	0.0	9.2e-22	77.7	0.0	1.2	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.21	gi|529043510|ref|YP_008369729.1|	-	5.9e-14	52.2	0.1	9.3e-14	51.6	0.1	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.12	gi|529043510|ref|YP_008369729.1|	-	1.3e-05	24.6	0.2	4.5e-05	22.8	0.2	1.7	1	1	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1_4	PF13701.6	gi|529043510|ref|YP_008369729.1|	-	0.0052	15.1	0.0	0.0071	14.7	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain	group	1
DDE_Tnp_1_6	PF13751.6	gi|529043510|ref|YP_008369729.1|	-	0.11	12.7	0.0	0.37	11.0	0.0	1.8	2	0	0	2	2	2	0	Transposase	DDE	domain
TrmB	PF01978.19	gi|529043513|ref|YP_008369732.1|	-	2.4e-09	36.9	0.0	5.2e-09	35.9	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|529043513|ref|YP_008369732.1|	-	6.3e-05	22.7	0.0	0.00019	21.1	0.0	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|529043513|ref|YP_008369732.1|	-	0.00025	21.1	0.0	0.00052	20.0	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|529043513|ref|YP_008369732.1|	-	0.00072	19.4	0.0	0.002	18.0	0.0	1.7	2	0	0	2	2	2	1	MarR	family
HTH_5	PF01022.20	gi|529043513|ref|YP_008369732.1|	-	0.0029	17.4	0.0	0.0051	16.7	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|529043513|ref|YP_008369732.1|	-	0.0033	16.9	0.0	0.016	14.8	0.0	2.0	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|529043513|ref|YP_008369732.1|	-	0.0035	17.2	0.0	0.0057	16.6	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|529043513|ref|YP_008369732.1|	-	0.014	15.9	0.0	0.024	15.1	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
PadR	PF03551.14	gi|529043513|ref|YP_008369732.1|	-	0.087	12.8	0.0	0.16	12.0	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_DeoR	PF08220.12	gi|529043513|ref|YP_008369732.1|	-	0.12	12.1	0.0	0.31	10.8	0.0	1.7	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
DDE_Tnp_1	PF01609.21	gi|529043514|ref|YP_008369733.1|	-	2.7e-09	37.0	0.3	4.2e-09	36.4	0.3	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
ORF6N	PF10543.9	gi|529043514|ref|YP_008369733.1|	-	0.15	12.3	0.7	0.48	10.7	0.3	1.9	2	0	0	2	2	2	0	ORF6N	domain
TauE	PF01925.19	gi|529043516|ref|YP_008369735.1|	-	0.00031	20.4	1.5	0.00033	20.4	1.5	1.1	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
PRiA4_ORF3	PF07929.11	gi|529043518|ref|YP_008369737.1|	-	5.8e-15	55.4	0.2	1.9e-14	53.8	0.0	1.8	2	0	0	2	2	2	1	Plasmid	pRiA4b	ORF-3-like	protein
DUF3499	PF12005.8	gi|529043518|ref|YP_008369737.1|	-	0.018	15.6	0.1	0.029	15.0	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3499)
DUF2800	PF10926.8	gi|529043519|ref|YP_008369738.1|	-	0.0022	17.3	0.1	0.0033	16.8	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2800)
DUF2383	PF09537.10	gi|529043519|ref|YP_008369738.1|	-	0.036	14.4	1.0	0.27	11.6	0.3	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF2383)
FlaC_arch	PF05377.11	gi|529043519|ref|YP_008369738.1|	-	0.11	12.9	0.3	1.1	9.8	0.1	2.4	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
Pox_A_type_inc	PF04508.12	gi|529043519|ref|YP_008369738.1|	-	2.6	8.0	6.8	0.87	9.5	2.7	2.5	2	0	0	2	2	2	0	Viral	A-type	inclusion	protein	repeat
DUF3368	PF11848.8	gi|529043522|ref|YP_008369741.1|	-	0.012	15.4	0.1	0.028	14.2	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3368)
DUF2330	PF10092.9	gi|529043522|ref|YP_008369741.1|	-	0.041	13.0	0.1	0.047	12.8	0.1	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2330)
UPF0175	PF03683.13	gi|529043523|ref|YP_008369742.1|	-	1e-16	60.4	1.3	1.4e-16	60.0	1.3	1.2	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
DUF1847	PF08901.11	gi|529043523|ref|YP_008369742.1|	-	0.0057	16.3	0.0	0.0073	16.0	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1847)
AAA_31	PF13614.6	gi|529043525|ref|YP_008369744.1|	-	7.4e-28	97.7	0.0	1.5e-27	96.6	0.0	1.5	1	1	1	2	2	2	1	AAA	domain
CbiA	PF01656.23	gi|529043525|ref|YP_008369744.1|	-	5.5e-14	52.3	0.0	7.8e-14	51.8	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
CBP_BcsQ	PF06564.12	gi|529043525|ref|YP_008369744.1|	-	1.1e-10	41.4	0.0	1.5e-10	40.9	0.0	1.2	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
ParA	PF10609.9	gi|529043525|ref|YP_008369744.1|	-	7.1e-10	38.7	0.0	6.2e-08	32.4	0.0	2.1	2	0	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|529043525|ref|YP_008369744.1|	-	6.3e-07	28.9	0.0	1.4e-06	27.7	0.0	1.6	2	0	0	2	2	2	1	Anion-transporting	ATPase
MipZ	PF09140.11	gi|529043525|ref|YP_008369744.1|	-	4.9e-06	26.0	0.3	0.0018	17.6	0.1	2.3	2	0	0	2	2	2	2	ATPase	MipZ
Fer4_NifH	PF00142.18	gi|529043525|ref|YP_008369744.1|	-	0.0011	18.4	0.0	0.0021	17.6	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
CLP1_P	PF16575.5	gi|529043525|ref|YP_008369744.1|	-	0.009	15.8	0.0	0.017	14.9	0.0	1.4	1	0	0	1	1	1	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
VirC1	PF07015.11	gi|529043525|ref|YP_008369744.1|	-	0.032	13.5	0.1	1.2	8.4	0.0	2.1	2	0	0	2	2	2	0	VirC1	protein
AAA_25	PF13481.6	gi|529043525|ref|YP_008369744.1|	-	0.034	13.7	0.0	0.097	12.2	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_18	PF13238.6	gi|529043525|ref|YP_008369744.1|	-	0.042	14.4	0.0	0.54	10.8	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
APS_kinase	PF01583.20	gi|529043525|ref|YP_008369744.1|	-	0.067	13.1	0.0	0.13	12.2	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
MeaB	PF03308.16	gi|529043525|ref|YP_008369744.1|	-	0.2	10.6	0.0	0.3	10.0	0.0	1.2	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
CSTF2_hinge	PF14327.6	gi|529043526|ref|YP_008369745.1|	-	0.18	12.3	0.0	0.28	11.7	0.0	1.2	1	0	0	1	1	1	0	Hinge	domain	of	cleavage	stimulation	factor	subunit	2
AAA_16	PF13191.6	gi|529043527|ref|YP_008369746.1|	-	2.2e-12	47.7	0.4	8.1e-12	45.9	0.1	2.1	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|529043527|ref|YP_008369746.1|	-	1.3e-10	41.8	0.0	8.5e-10	39.2	0.0	2.4	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Cdc6_C	PF09079.11	gi|529043527|ref|YP_008369746.1|	-	1e-09	38.2	0.1	4e-09	36.3	0.0	2.1	2	0	0	2	2	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|529043527|ref|YP_008369746.1|	-	5.6e-05	23.4	0.0	0.00017	21.9	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
DUF815	PF05673.13	gi|529043527|ref|YP_008369746.1|	-	5.6e-05	22.4	0.0	0.00011	21.4	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
ATPase_2	PF01637.18	gi|529043527|ref|YP_008369746.1|	-	9.8e-05	22.4	0.0	0.00038	20.4	0.0	2.0	2	1	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
AAA_18	PF13238.6	gi|529043527|ref|YP_008369746.1|	-	0.0022	18.5	0.0	0.0089	16.6	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
TniB	PF05621.11	gi|529043527|ref|YP_008369746.1|	-	0.0034	16.8	0.0	0.03	13.7	0.0	2.2	1	1	0	1	1	1	1	Bacterial	TniB	protein
Sigma54_activat	PF00158.26	gi|529043527|ref|YP_008369746.1|	-	0.0035	17.1	0.0	0.0079	15.9	0.0	1.6	1	0	0	1	1	1	1	Sigma-54	interaction	domain
RNA_helicase	PF00910.22	gi|529043527|ref|YP_008369746.1|	-	0.0038	17.6	0.1	0.027	14.9	0.0	2.5	3	0	0	3	3	3	1	RNA	helicase
ABC_tran	PF00005.27	gi|529043527|ref|YP_008369746.1|	-	0.014	15.9	0.0	0.049	14.2	0.0	2.0	2	1	0	2	2	2	0	ABC	transporter
AAA_5	PF07728.14	gi|529043527|ref|YP_008369746.1|	-	0.014	15.3	0.1	0.11	12.5	0.1	2.3	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_32	PF13654.6	gi|529043527|ref|YP_008369746.1|	-	0.021	13.6	0.3	4.8	5.9	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
Mg_chelatase	PF01078.21	gi|529043527|ref|YP_008369746.1|	-	0.029	13.7	0.0	0.064	12.6	0.0	1.6	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
NACHT	PF05729.12	gi|529043527|ref|YP_008369746.1|	-	0.036	14.0	0.1	0.14	12.1	0.1	1.9	1	1	0	1	1	1	0	NACHT	domain
PIF1	PF05970.14	gi|529043527|ref|YP_008369746.1|	-	0.037	13.2	0.0	0.057	12.6	0.0	1.4	1	0	0	1	1	1	0	PIF1-like	helicase
NB-ARC	PF00931.22	gi|529043527|ref|YP_008369746.1|	-	0.047	12.9	0.0	0.98	8.5	0.0	2.2	2	0	0	2	2	2	0	NB-ARC	domain
IstB_IS21	PF01695.17	gi|529043527|ref|YP_008369746.1|	-	0.068	12.9	0.0	0.2	11.4	0.0	1.8	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_7	PF12775.7	gi|529043527|ref|YP_008369746.1|	-	0.07	12.6	0.0	0.17	11.4	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_assoc_2	PF16193.5	gi|529043527|ref|YP_008369746.1|	-	0.072	13.4	0.2	0.31	11.4	0.2	2.1	1	0	0	1	1	1	0	AAA	C-terminal	domain
Sigma54_activ_2	PF14532.6	gi|529043527|ref|YP_008369746.1|	-	0.1	12.7	0.0	0.21	11.7	0.0	1.5	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_25	PF13481.6	gi|529043527|ref|YP_008369746.1|	-	0.13	11.8	2.4	0.35	10.4	0.3	2.6	2	1	0	2	2	2	0	AAA	domain
DUF1993	PF09351.10	gi|529043528|ref|YP_008369747.1|	-	0.017	15.2	0.0	0.021	15.0	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1993)
LTD	PF00932.19	gi|529043530|ref|YP_008369749.1|	-	2.5e-25	89.0	0.9	8.7e-25	87.3	0.6	2.1	2	0	0	2	2	2	1	Lamin	Tail	Domain
Lactamase_B	PF00753.27	gi|529043530|ref|YP_008369749.1|	-	1.5e-13	51.2	1.1	3.5e-13	50.0	1.1	1.6	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|529043530|ref|YP_008369749.1|	-	0.0094	15.5	0.0	0.026	14.0	0.0	1.7	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|529043530|ref|YP_008369749.1|	-	0.076	12.4	0.0	0.13	11.7	0.0	1.3	1	0	0	1	1	1	0	Metallo-beta-lactamase	superfamily	domain
DUF3006	PF11213.8	gi|529043531|ref|YP_008369750.1|	-	6.9e-17	61.4	2.8	8e-17	61.2	2.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3006)
Transposase_20	PF02371.16	gi|529043532|ref|YP_008369751.1|	-	1.4e-23	83.0	0.0	8e-23	80.6	0.0	2.0	2	0	0	2	2	2	1	Transposase	IS116/IS110/IS902	family
DEDD_Tnp_IS110	PF01548.17	gi|529043532|ref|YP_008369751.1|	-	8.5e-11	42.0	0.1	1.8e-10	40.9	0.1	1.6	1	0	0	1	1	1	1	Transposase
NPV_P10	PF05531.12	gi|529043532|ref|YP_008369751.1|	-	0.0078	16.7	0.6	0.071	13.6	0.2	2.2	2	0	0	2	2	2	1	Nucleopolyhedrovirus	P10	protein
CutA1	PF03091.15	gi|529043532|ref|YP_008369751.1|	-	0.11	12.4	0.1	0.29	11.0	0.0	1.8	2	0	0	2	2	2	0	CutA1	divalent	ion	tolerance	protein
RsfS	PF02410.15	gi|529043532|ref|YP_008369751.1|	-	0.11	12.9	0.0	0.45	11.0	0.0	2.1	2	0	0	2	2	2	0	Ribosomal	silencing	factor	during	starvation
Nmad5	PF18757.1	gi|529043532|ref|YP_008369751.1|	-	0.17	12.0	1.7	1.2	9.3	0.6	2.3	2	1	0	2	2	2	0	Nucleotide	modification	associated	domain	5
4HB_MCP_1	PF12729.7	gi|529043532|ref|YP_008369751.1|	-	2.2	7.8	4.7	2	7.9	0.2	2.6	2	1	1	3	3	3	0	Four	helix	bundle	sensory	module	for	signal	transduction
DDE_Tnp_1	PF01609.21	gi|529043534|ref|YP_008369753.1|	-	1e-06	28.6	0.6	2e-06	27.6	0.6	1.5	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_7	PF13843.6	gi|529043534|ref|YP_008369753.1|	-	0.00014	21.3	0.0	0.0022	17.3	0.0	2.1	2	0	0	2	2	2	1	Transposase	IS4
DUF772	PF05598.11	gi|529043534|ref|YP_008369753.1|	-	0.00085	19.3	0.5	0.045	13.8	0.1	2.6	2	0	0	2	2	2	1	Transposase	domain	(DUF772)
TetR_C_32	PF09209.11	gi|529043534|ref|YP_008369753.1|	-	0.052	13.5	0.7	0.4	10.7	0.0	2.6	3	0	0	3	3	3	0	Tetracyclin	repressor-like,	C-terminal	domain
Glyco_hydro_46	PF01374.18	gi|529043534|ref|YP_008369753.1|	-	0.082	12.5	0.1	0.15	11.7	0.1	1.4	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	46
Aldolase_II	PF00596.21	gi|529043535|ref|YP_008369754.1|	-	7.4e-45	153.2	0.0	8.5e-45	153.0	0.0	1.0	1	0	0	1	1	1	1	Class	II	Aldolase	and	Adducin	N-terminal	domain
FGGY_N	PF00370.21	gi|529043536|ref|YP_008369755.1|	-	3.3e-61	207.0	0.0	4.5e-61	206.5	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
FGGY_C	PF02782.16	gi|529043536|ref|YP_008369755.1|	-	1.4e-32	113.1	0.0	2e-32	112.5	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
BcrAD_BadFG	PF01869.20	gi|529043536|ref|YP_008369755.1|	-	0.0034	16.9	0.0	0.0061	16.1	0.0	1.4	1	0	0	1	1	1	1	BadF/BadG/BcrA/BcrD	ATPase	family
DUF2264	PF10022.9	gi|529043537|ref|YP_008369756.1|	-	3.6e-126	421.0	0.2	4.6e-126	420.7	0.2	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2264)
Glyco_hydro_88	PF07470.13	gi|529043538|ref|YP_008369757.1|	-	1.8e-28	99.6	1.4	2.2e-28	99.3	1.4	1.1	1	0	0	1	1	1	1	Glycosyl	Hydrolase	Family	88
Glyco_hydro_127	PF07944.12	gi|529043538|ref|YP_008369757.1|	-	0.059	11.9	0.0	0.12	10.8	0.0	1.3	1	1	0	1	1	1	0	Beta-L-arabinofuranosidase,	GH127
Aldo_ket_red	PF00248.21	gi|529043539|ref|YP_008369758.1|	-	1.4e-58	198.5	0.0	2.9e-56	190.9	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
DUF5021	PF16424.5	gi|529043539|ref|YP_008369758.1|	-	0.083	12.7	0.0	0.13	12.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5021)
GP79	PF17463.2	gi|529043539|ref|YP_008369758.1|	-	0.11	12.5	0.0	0.33	11.0	0.0	1.8	1	0	0	1	1	1	0	Gene	product	79
DUF4380	PF14315.6	gi|529043540|ref|YP_008369759.1|	-	0.051	12.5	0.0	0.28	10.1	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4380)
Glyco_hydro_42	PF02449.15	gi|529043541|ref|YP_008369760.1|	-	2.3e-148	494.5	1.9	2.8e-148	494.2	1.9	1.1	1	0	0	1	1	1	1	Beta-galactosidase
Glyco_hydro_42M	PF08532.10	gi|529043541|ref|YP_008369760.1|	-	4.6e-59	199.4	0.0	6.7e-59	198.9	0.0	1.2	1	0	0	1	1	1	1	Beta-galactosidase	trimerisation	domain
Glyco_hydro_14	PF01373.17	gi|529043541|ref|YP_008369760.1|	-	2.7e-05	23.3	0.0	0.00016	20.7	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	hydrolase	family	14
Cellulase	PF00150.18	gi|529043541|ref|YP_008369760.1|	-	8e-05	22.2	0.0	0.00012	21.6	0.0	1.3	1	0	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
Glyco_hydro_42C	PF08533.10	gi|529043541|ref|YP_008369760.1|	-	0.0028	17.4	0.0	0.0071	16.1	0.0	1.7	1	0	0	1	1	1	1	Beta-galactosidase	C-terminal	domain
Glyco_hydro_35	PF01301.19	gi|529043541|ref|YP_008369760.1|	-	0.044	13.4	0.0	0.1	12.2	0.0	1.5	1	1	0	1	1	1	0	Glycosyl	hydrolases	family	35
BPD_transp_1	PF00528.22	gi|529043542|ref|YP_008369761.1|	-	6.9e-19	68.3	13.4	6.9e-19	68.3	13.4	2.0	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|529043543|ref|YP_008369762.1|	-	2.4e-36	125.2	12.0	3.5e-36	124.7	12.0	1.2	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_5	PF00496.22	gi|529043544|ref|YP_008369763.1|	-	1.9e-32	112.7	0.8	3.5e-32	111.8	0.8	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
Glyco_hydro_127	PF07944.12	gi|529043546|ref|YP_008369765.1|	-	7.8e-162	539.4	0.0	1e-161	539.0	0.0	1.1	1	0	0	1	1	1	1	Beta-L-arabinofuranosidase,	GH127
SDA1	PF05285.12	gi|529043546|ref|YP_008369765.1|	-	4.7	6.5	7.5	6.5	6.1	7.5	1.1	1	0	0	1	1	1	0	SDA1
BNR_2	PF13088.6	gi|529043547|ref|YP_008369766.1|	-	1.4e-12	47.5	0.0	3.7e-09	36.3	0.0	2.3	1	1	1	2	2	2	2	BNR	repeat-like	domain
BNR	PF02012.20	gi|529043547|ref|YP_008369766.1|	-	0.00012	21.5	17.3	0.071	13.1	0.7	4.8	5	0	0	5	5	5	3	BNR/Asp-box	repeat
F5_F8_type_C	PF00754.25	gi|529043547|ref|YP_008369766.1|	-	0.00021	21.4	0.1	7.7	6.7	0.0	4.0	3	1	1	4	4	4	2	F5/8	type	C	domain
Sortilin-Vps10	PF15902.5	gi|529043547|ref|YP_008369766.1|	-	0.0003	19.7	0.6	0.3	9.8	0.1	2.8	3	0	0	3	3	3	2	Sortilin,	neurotensin	receptor	3,
PSII_BNR	PF14870.6	gi|529043547|ref|YP_008369766.1|	-	0.032	13.5	0.3	2.8	7.1	0.0	2.9	3	0	0	3	3	3	0	Photosynthesis	system	II	assembly	factor	YCF48
BNR_6	PF15899.5	gi|529043547|ref|YP_008369766.1|	-	0.058	13.5	1.1	2.4	8.4	0.0	3.3	3	0	0	3	3	3	0	BNR-Asp	box	repeat
CyRPA	PF18638.1	gi|529043547|ref|YP_008369766.1|	-	0.075	12.2	0.1	4.8	6.2	0.0	2.3	3	0	0	3	3	3	0	Cysteine-Rich	Protective	Antigen	6	bladed	domain
ClpB_D2-small	PF10431.9	gi|529043548|ref|YP_008369767.1|	-	0.3	11.2	0.2	0.38	10.8	0.2	1.1	1	0	0	1	1	1	0	C-terminal,	D2-small	domain,	of	ClpB	protein
Alpha-L-AF_C	PF06964.12	gi|529043549|ref|YP_008369768.1|	-	2.6e-07	30.9	0.0	4.7e-07	30.1	0.0	1.5	1	0	0	1	1	1	1	Alpha-L-arabinofuranosidase	C-terminal	domain
Alpha-L-AF_C	PF06964.12	gi|529043550|ref|YP_008369769.1|	-	1.1e-32	113.5	1.5	1.6e-32	112.9	1.5	1.3	1	0	0	1	1	1	1	Alpha-L-arabinofuranosidase	C-terminal	domain
Glyco_hydro_79C	PF16862.5	gi|529043550|ref|YP_008369769.1|	-	0.0077	17.1	0.8	0.085	13.8	0.7	2.5	3	0	0	3	3	3	1	Glycosyl	hydrolase	family	79	C-terminal	beta	domain
Alpha-L-AF_C	PF06964.12	gi|529043551|ref|YP_008369770.1|	-	1.1e-29	103.7	2.0	1.7e-29	103.1	2.0	1.2	1	0	0	1	1	1	1	Alpha-L-arabinofuranosidase	C-terminal	domain
Dockerin_1	PF00404.18	gi|529043552|ref|YP_008369771.1|	-	0.0031	17.7	4.4	0.008	16.4	4.4	1.7	1	0	0	1	1	1	1	Dockerin	type	I	domain
EF-hand_6	PF13405.6	gi|529043552|ref|YP_008369771.1|	-	0.026	14.4	0.5	0.026	14.4	0.5	3.4	3	1	0	3	3	3	0	EF-hand	domain
EF-hand_1	PF00036.32	gi|529043552|ref|YP_008369771.1|	-	0.064	12.8	8.5	1.1	8.9	0.5	4.2	3	1	1	4	4	4	0	EF	hand
Glyco_hydro_30C	PF17189.4	gi|529043552|ref|YP_008369771.1|	-	0.087	13.1	0.3	0.4	10.9	0.1	2.3	2	0	0	2	2	2	0	Glycosyl	hydrolase	family	30	beta	sandwich	domain
EF-hand_9	PF14658.6	gi|529043552|ref|YP_008369771.1|	-	0.19	12.1	0.4	7	7.1	0.1	3.2	2	1	1	3	3	3	0	EF-hand	domain
TAT_signal	PF10518.9	gi|529043552|ref|YP_008369771.1|	-	1.8	8.5	5.5	5	7.1	5.5	1.8	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
EF-hand_7	PF13499.6	gi|529043552|ref|YP_008369771.1|	-	5.5	7.5	6.4	3.9	8.0	0.4	3.1	3	1	0	3	3	3	0	EF-hand	domain	pair
HTH_32	PF13565.6	gi|529043553|ref|YP_008369772.1|	-	3.1e-14	53.4	0.3	9.8e-14	51.7	0.1	2.0	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|529043553|ref|YP_008369772.1|	-	3.4e-12	46.2	0.0	2.2e-11	43.6	0.0	2.1	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_33	PF13592.6	gi|529043553|ref|YP_008369772.1|	-	7.1e-11	41.6	0.3	2.7e-09	36.5	0.0	2.5	3	0	0	3	3	3	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|529043553|ref|YP_008369772.1|	-	2.4e-06	27.1	0.2	1.3e-05	24.9	0.0	2.2	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|529043553|ref|YP_008369772.1|	-	7.7e-06	25.9	0.0	7.6e-05	22.8	0.0	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|529043553|ref|YP_008369772.1|	-	4e-05	23.5	0.0	0.0001	22.1	0.0	1.7	2	0	0	2	2	2	1	HTH	domain
HTH_Tnp_4	PF13613.6	gi|529043553|ref|YP_008369772.1|	-	0.00014	21.5	0.0	0.00042	20.0	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	of	DDE	superfamily	endonuclease
HTH_7	PF02796.15	gi|529043553|ref|YP_008369772.1|	-	0.00045	20.2	0.0	0.03	14.4	0.0	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	resolvase
HTH_38	PF13936.6	gi|529043553|ref|YP_008369772.1|	-	0.003	17.3	0.0	0.027	14.2	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|529043553|ref|YP_008369772.1|	-	0.0036	17.2	0.0	0.0057	16.6	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HBS1_N	PF08938.10	gi|529043553|ref|YP_008369772.1|	-	0.013	15.8	1.1	0.026	14.8	0.3	2.0	2	1	0	2	2	2	0	HBS1	N-terminus
HTH_psq	PF05225.16	gi|529043553|ref|YP_008369772.1|	-	0.016	15.0	0.0	0.027	14.2	0.0	1.4	1	0	0	1	1	1	0	helix-turn-helix,	Psq	domain
GntR	PF00392.21	gi|529043553|ref|YP_008369772.1|	-	0.016	14.8	0.0	0.092	12.4	0.0	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_36	PF13730.6	gi|529043553|ref|YP_008369772.1|	-	0.019	14.9	0.0	0.031	14.2	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.6	gi|529043553|ref|YP_008369772.1|	-	0.022	14.1	0.4	0.039	13.4	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_17	PF12728.7	gi|529043553|ref|YP_008369772.1|	-	0.16	12.2	0.4	0.9	9.8	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
Arabinose_Isome	PF02610.15	gi|529043554|ref|YP_008369773.1|	-	7.5e-174	578.0	0.0	9.7e-174	577.7	0.0	1.1	1	0	0	1	1	1	1	L-arabinose	isomerase
Arabinose_Iso_C	PF11762.8	gi|529043554|ref|YP_008369773.1|	-	7.5e-50	167.5	0.1	2.4e-49	165.9	0.0	1.9	2	0	0	2	2	2	1	L-arabinose	isomerase	C-terminal	domain
Sipho_Gp37	PF14594.6	gi|529043554|ref|YP_008369773.1|	-	0.14	11.2	0.1	0.2	10.6	0.1	1.2	1	0	0	1	1	1	0	Siphovirus	ReqiPepy6	Gp37-like	protein
DUF2909	PF11137.8	gi|529043555|ref|YP_008369774.1|	-	0.1	12.6	5.1	0.12	12.3	5.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2909)
DUF5326	PF17260.2	gi|529043555|ref|YP_008369774.1|	-	8.9	6.5	8.6	16	5.7	3.0	2.0	1	1	1	2	2	2	0	Family	of	unknown	function	(DUF5326)
Alpha-L-AF_C	PF06964.12	gi|529043556|ref|YP_008369775.1|	-	3.6e-34	118.3	1.6	4.8e-34	117.9	1.6	1.2	1	0	0	1	1	1	1	Alpha-L-arabinofuranosidase	C-terminal	domain
VBS	PF08913.10	gi|529043557|ref|YP_008369776.1|	-	0.012	16.1	0.0	0.021	15.2	0.0	1.4	1	0	0	1	1	1	0	Vinculin	Binding	Site
DUF89	PF01937.19	gi|529043557|ref|YP_008369776.1|	-	0.051	12.5	0.0	0.061	12.3	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF89
Con-6	PF10346.9	gi|529043557|ref|YP_008369776.1|	-	0.09	12.8	0.0	0.17	12.0	0.0	1.4	1	0	0	1	1	1	0	Conidiation	protein	6
Spc7	PF08317.11	gi|529043558|ref|YP_008369777.1|	-	3.6e-07	29.4	70.8	0.0017	17.3	22.6	4.2	2	2	2	4	4	4	4	Spc7	kinetochore	protein
DUF5082	PF16888.5	gi|529043558|ref|YP_008369777.1|	-	0.00012	22.4	52.6	0.012	15.9	13.1	5.8	2	2	3	5	5	5	3	Domain	of	unknown	function	(DUF5082)
Atg14	PF10186.9	gi|529043558|ref|YP_008369777.1|	-	0.00012	21.3	47.0	0.12	11.5	13.1	4.0	2	2	2	4	4	4	3	Vacuolar	sorting	38	and	autophagy-related	subunit	14
AAA_15	PF13175.6	gi|529043558|ref|YP_008369777.1|	-	0.00018	21.4	9.5	0.002	17.9	9.4	2.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|529043558|ref|YP_008369777.1|	-	0.00038	21.0	66.0	2.1e+02	2.3	46.0	4.6	1	1	1	2	2	2	0	AAA	domain
DUF1664	PF07889.12	gi|529043558|ref|YP_008369777.1|	-	0.0014	18.7	41.1	0.55	10.3	6.3	5.6	3	2	1	5	5	5	3	Protein	of	unknown	function	(DUF1664)
Baculo_PEP_C	PF04513.12	gi|529043558|ref|YP_008369777.1|	-	0.0022	18.0	26.1	0.64	10.0	3.1	5.1	3	2	3	6	6	5	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DHR10	PF18595.1	gi|529043558|ref|YP_008369777.1|	-	0.003	17.6	77.1	0.13	12.3	11.3	4.7	2	2	1	4	4	4	3	Designed	helical	repeat	protein	10	domain
Lectin_N	PF03954.14	gi|529043558|ref|YP_008369777.1|	-	0.0048	16.6	17.5	0.042	13.6	0.1	4.6	3	2	1	4	4	4	2	Hepatic	lectin,	N-terminal	domain
DUF4407	PF14362.6	gi|529043558|ref|YP_008369777.1|	-	0.0054	16.1	51.3	0.07	12.5	5.3	3.7	1	1	2	3	3	3	3	Domain	of	unknown	function	(DUF4407)
Myosin_tail_1	PF01576.19	gi|529043558|ref|YP_008369777.1|	-	0.008	14.1	72.4	0.027	12.3	28.9	2.9	2	1	1	3	3	3	2	Myosin	tail
ADIP	PF11559.8	gi|529043558|ref|YP_008369777.1|	-	0.0089	16.1	12.2	0.0089	16.1	12.2	5.7	2	2	4	6	6	6	3	Afadin-	and	alpha	-actinin-Binding
Uso1_p115_C	PF04871.13	gi|529043558|ref|YP_008369777.1|	-	0.021	15.2	5.0	0.021	15.2	5.0	4.8	2	2	2	4	4	4	0	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
Fez1	PF06818.15	gi|529043558|ref|YP_008369777.1|	-	0.022	15.2	60.1	0.9	10.0	16.5	4.1	1	1	3	4	4	4	0	Fez1
NPV_P10	PF05531.12	gi|529043558|ref|YP_008369777.1|	-	0.029	14.8	32.2	1	9.8	1.2	6.8	2	2	4	6	6	6	0	Nucleopolyhedrovirus	P10	protein
DivIC	PF04977.15	gi|529043558|ref|YP_008369777.1|	-	0.03	14.1	0.8	0.03	14.1	0.8	9.0	2	2	6	8	8	8	0	Septum	formation	initiator
DUF4201	PF13870.6	gi|529043558|ref|YP_008369777.1|	-	0.033	13.9	51.8	0.13	11.9	2.3	4.6	2	2	2	4	4	4	0	Domain	of	unknown	function	(DUF4201)
Seryl_tRNA_N	PF02403.22	gi|529043558|ref|YP_008369777.1|	-	0.052	13.8	60.8	0.082	13.1	10.3	5.8	2	2	3	5	5	5	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF3584	PF12128.8	gi|529043558|ref|YP_008369777.1|	-	0.086	10.3	60.9	0.34	8.4	27.4	2.4	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3584)
AAA_13	PF13166.6	gi|529043558|ref|YP_008369777.1|	-	0.087	11.5	45.8	0.079	11.6	18.7	2.5	1	1	0	2	2	2	0	AAA	domain
HemX	PF04375.14	gi|529043558|ref|YP_008369777.1|	-	0.097	11.9	40.2	2	7.6	9.1	4.2	2	2	2	4	4	4	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
FlaC_arch	PF05377.11	gi|529043558|ref|YP_008369777.1|	-	0.1	13.0	0.5	0.1	13.0	0.5	8.6	5	2	4	9	9	8	0	Flagella	accessory	protein	C	(FlaC)
LPP	PF04728.13	gi|529043558|ref|YP_008369777.1|	-	0.17	12.3	27.0	0.73	10.3	0.1	7.5	4	3	4	8	8	7	0	Lipoprotein	leucine-zipper
HMMR_N	PF15905.5	gi|529043558|ref|YP_008369777.1|	-	0.2	11.1	64.4	0.23	10.9	9.5	4.0	2	2	2	4	4	4	0	Hyaluronan	mediated	motility	receptor	N-terminal
DUF4200	PF13863.6	gi|529043558|ref|YP_008369777.1|	-	0.23	11.9	69.0	2.2	8.7	0.2	7.0	2	2	4	7	7	7	0	Domain	of	unknown	function	(DUF4200)
TPR_MLP1_2	PF07926.12	gi|529043558|ref|YP_008369777.1|	-	0.48	10.5	72.6	0.095	12.8	20.9	5.3	2	2	2	4	4	4	0	TPR/MLP1/MLP2-like	protein
CENP-F_leu_zip	PF10473.9	gi|529043558|ref|YP_008369777.1|	-	0.58	10.2	78.1	0.19	11.8	17.4	5.9	2	2	3	5	5	4	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Tropomyosin_1	PF12718.7	gi|529043558|ref|YP_008369777.1|	-	0.62	10.2	81.6	0.78	9.9	15.5	4.8	1	1	2	4	4	4	0	Tropomyosin	like
IFT57	PF10498.9	gi|529043558|ref|YP_008369777.1|	-	1.1	8.2	40.9	0.014	14.4	10.9	2.9	2	1	0	2	2	2	0	Intra-flagellar	transport	protein	57
FliJ	PF02050.16	gi|529043558|ref|YP_008369777.1|	-	2.8	8.2	48.8	1.6	9.0	12.0	5.1	2	2	2	4	4	4	0	Flagellar	FliJ	protein
KASH_CCD	PF14662.6	gi|529043558|ref|YP_008369777.1|	-	3.2	7.5	67.4	3.2	7.5	17.8	4.1	2	2	2	4	4	4	0	Coiled-coil	region	of	CCDC155	or	KASH
MAD	PF05557.13	gi|529043558|ref|YP_008369777.1|	-	3.4	5.9	62.9	2.8	6.2	25.9	2.4	2	0	0	2	2	2	0	Mitotic	checkpoint	protein
GAS	PF13851.6	gi|529043558|ref|YP_008369777.1|	-	3.4	6.9	59.9	8.2	5.7	7.6	4.7	2	2	2	4	4	4	0	Growth-arrest	specific	micro-tubule	binding
WXG100	PF06013.12	gi|529043558|ref|YP_008369777.1|	-	5.2	7.4	29.1	17	5.7	0.2	7.1	4	1	0	6	6	6	0	Proteins	of	100	residues	with	WXG
Tektin	PF03148.14	gi|529043558|ref|YP_008369777.1|	-	6.5	5.4	65.3	0.43	9.3	1.3	5.7	1	1	3	4	4	4	0	Tektin	family
GIT_CC	PF16559.5	gi|529043558|ref|YP_008369777.1|	-	7.8	6.4	20.4	0.29	11.0	0.4	5.5	5	1	2	7	7	7	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
APG6_N	PF17675.1	gi|529043558|ref|YP_008369777.1|	-	8.5	6.9	94.3	18	5.9	17.2	5.9	1	1	3	5	5	5	0	Apg6	coiled-coil	region
YscO	PF07321.12	gi|529043558|ref|YP_008369777.1|	-	8.6	6.3	73.2	0.052	13.5	2.7	5.0	3	1	0	4	4	4	0	Type	III	secretion	protein	YscO
FPP	PF05911.11	gi|529043558|ref|YP_008369777.1|	-	9.7	4.2	56.5	2.7	6.1	25.2	2.6	1	1	0	2	2	2	0	Filament-like	plant	protein,	long	coiled-coil
GFRP	PF06399.13	gi|529043559|ref|YP_008369778.1|	-	0.025	14.5	0.0	0.025	14.5	0.0	1.0	1	0	0	1	1	1	0	GTP	cyclohydrolase	I	feedback	regulatory	protein	(GFRP)
AAA_31	PF13614.6	gi|529043560|ref|YP_008369779.1|	-	1.6e-21	77.0	0.0	2.4e-21	76.5	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|529043560|ref|YP_008369779.1|	-	5.3e-15	55.6	0.0	7.8e-15	55.1	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|529043560|ref|YP_008369779.1|	-	1.6e-08	34.3	0.1	1.2e-07	31.4	0.1	1.9	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|529043560|ref|YP_008369779.1|	-	7.7e-07	28.7	0.2	0.00023	20.5	0.1	2.3	1	1	1	2	2	2	2	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|529043560|ref|YP_008369779.1|	-	5.6e-06	26.0	0.0	1.1e-05	25.1	0.0	1.4	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
CLP1_P	PF16575.5	gi|529043560|ref|YP_008369779.1|	-	0.0027	17.5	0.0	0.0048	16.7	0.0	1.3	1	0	0	1	1	1	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
ArsA_ATPase	PF02374.15	gi|529043560|ref|YP_008369779.1|	-	0.0034	16.6	0.0	0.0092	15.2	0.0	1.7	2	0	0	2	2	2	1	Anion-transporting	ATPase
ATP_bind_1	PF03029.17	gi|529043560|ref|YP_008369779.1|	-	0.011	15.6	0.0	0.02	14.7	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_24	PF13479.6	gi|529043560|ref|YP_008369779.1|	-	0.014	15.1	0.0	0.032	13.9	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|529043560|ref|YP_008369779.1|	-	0.023	14.4	0.0	0.048	13.3	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
Fer4_NifH	PF00142.18	gi|529043560|ref|YP_008369779.1|	-	0.024	14.1	0.0	0.038	13.4	0.0	1.4	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_18	PF13238.6	gi|529043560|ref|YP_008369779.1|	-	0.075	13.6	0.1	0.21	12.1	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_14	PF13173.6	gi|529043560|ref|YP_008369779.1|	-	0.14	12.2	0.0	0.33	11.0	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|529043560|ref|YP_008369779.1|	-	0.27	10.8	1.7	0.44	10.1	0.4	2.1	2	1	0	2	2	2	0	AAA	domain
PDDEXK_1	PF12705.7	gi|529043561|ref|YP_008369780.1|	-	1.7e-12	47.8	0.3	4.3e-12	46.5	0.1	1.9	2	0	0	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
UvrD-helicase	PF00580.21	gi|529043562|ref|YP_008369781.1|	-	2.3e-50	171.9	0.1	1.1e-49	169.7	0.1	2.0	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C	PF13361.6	gi|529043562|ref|YP_008369781.1|	-	9.7e-33	114.0	0.0	8.1e-19	68.2	0.0	2.4	1	1	1	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_19	PF13245.6	gi|529043562|ref|YP_008369781.1|	-	1.1e-24	87.4	0.0	1.5e-23	83.7	0.0	2.6	2	1	0	2	2	1	1	AAA	domain
UvrD_C_2	PF13538.6	gi|529043562|ref|YP_008369781.1|	-	4.1e-10	39.3	0.2	0.00013	21.7	0.1	2.7	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
PDDEXK_1	PF12705.7	gi|529043562|ref|YP_008369781.1|	-	1.5e-08	34.8	2.3	8.2e-08	32.5	0.2	2.5	2	1	1	3	3	3	1	PD-(D/E)XK	nuclease	superfamily
AAA_30	PF13604.6	gi|529043562|ref|YP_008369781.1|	-	2.4e-06	27.4	0.0	1.3e-05	25.0	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_12	PF13087.6	gi|529043562|ref|YP_008369781.1|	-	0.00074	19.2	0.0	0.029	14.0	0.0	2.6	2	1	0	2	2	2	1	AAA	domain
Viral_helicase1	PF01443.18	gi|529043562|ref|YP_008369781.1|	-	0.0025	17.6	0.3	8.7	6.0	0.0	3.6	3	1	0	3	3	3	1	Viral	(Superfamily	1)	RNA	helicase
NTPase_I-T	PF01931.18	gi|529043562|ref|YP_008369781.1|	-	0.008	16.0	0.0	0.11	12.3	0.0	2.2	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF84
AAA_11	PF13086.6	gi|529043562|ref|YP_008369781.1|	-	0.017	14.9	0.0	0.56	9.9	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|529043562|ref|YP_008369781.1|	-	0.1	12.9	0.0	0.62	10.3	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
DUF3090	PF11290.8	gi|529043563|ref|YP_008369782.1|	-	0.05	13.4	0.0	0.25	11.1	0.0	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3090)
DUF1045	PF06299.12	gi|529043563|ref|YP_008369782.1|	-	0.078	12.9	0.1	0.24	11.3	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1045)
DDE_Tnp_1	PF01609.21	gi|529043564|ref|YP_008369783.1|	-	1.1e-08	35.0	0.1	2.2e-08	34.0	0.0	1.5	2	0	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|529043564|ref|YP_008369783.1|	-	0.021	15.1	0.0	0.065	13.5	0.0	1.7	2	0	0	2	2	2	0	Transposase	DDE	domain
DDE_5	PF13546.6	gi|529043567|ref|YP_008369786.1|	-	6.8e-23	81.4	0.1	1e-22	80.8	0.1	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DNA_gyraseA_C	PF03989.13	gi|529043568|ref|YP_008369787.1|	-	2.2e-55	183.9	1.8	2.2e-12	46.2	0.0	6.2	6	1	0	6	6	6	5	DNA	gyrase	C-terminal	domain,	beta-propeller
Cas_Csn2	PF09711.10	gi|529043568|ref|YP_008369787.1|	-	0.021	14.5	0.1	0.034	13.8	0.1	1.2	1	0	0	1	1	1	0	CRISPR-associated	protein	(Cas_Csn2)
YfdX	PF10938.8	gi|529043569|ref|YP_008369788.1|	-	0.0091	15.9	3.4	0.0091	15.9	3.4	1.9	2	0	0	2	2	2	1	YfdX	protein
PvlArgDC	PF01862.16	gi|529043569|ref|YP_008369788.1|	-	0.063	13.1	2.2	4.8	7.0	0.0	4.0	5	0	0	5	5	5	0	Pyruvoyl-dependent	arginine	decarboxylase	(PvlArgDC)
HNH_repeat	PF18780.1	gi|529043569|ref|YP_008369788.1|	-	0.12	12.2	0.0	0.12	12.2	0.0	3.5	4	0	0	4	4	4	0	Homing	endonuclease	repeat
ResIII	PF04851.15	gi|529043570|ref|YP_008369789.1|	-	3.4e-21	76.0	0.0	6e-21	75.2	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|529043570|ref|YP_008369789.1|	-	4.5e-13	49.5	0.1	1.2e-12	48.2	0.1	1.7	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|529043570|ref|YP_008369789.1|	-	6.8e-11	42.3	0.0	1.4e-10	41.2	0.0	1.6	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
SWI2_SNF2	PF18766.1	gi|529043570|ref|YP_008369789.1|	-	3e-09	36.9	0.0	7.8e-09	35.5	0.0	1.6	1	1	0	1	1	1	1	SWI2/SNF2	ATPase
SNF2_N	PF00176.23	gi|529043570|ref|YP_008369789.1|	-	1.6e-07	30.4	0.0	2.7e-07	29.6	0.0	1.2	1	0	0	1	1	1	1	SNF2	family	N-terminal	domain
ERCC3_RAD25_C	PF16203.5	gi|529043570|ref|YP_008369789.1|	-	0.0029	16.9	0.0	0.0054	16.0	0.0	1.4	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
AAA_25	PF13481.6	gi|529043570|ref|YP_008369789.1|	-	0.033	13.8	0.0	0.075	12.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
DDE_Tnp_IS66	PF03050.14	gi|529043571|ref|YP_008369790.1|	-	4.8e-49	167.3	0.1	4.8e-49	167.3	0.1	1.6	2	0	0	2	2	2	1	Transposase	IS66	family
zf-IS66	PF13005.7	gi|529043571|ref|YP_008369790.1|	-	7.4e-06	26.3	2.6	2.1e-05	24.8	2.6	1.8	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
GAS	PF13851.6	gi|529043571|ref|YP_008369790.1|	-	0.00063	19.2	4.5	0.0012	18.2	4.5	1.3	1	0	0	1	1	1	1	Growth-arrest	specific	micro-tubule	binding
bZIP_1	PF00170.21	gi|529043571|ref|YP_008369790.1|	-	0.0022	18.0	4.7	0.005	16.9	4.7	1.6	1	0	0	1	1	1	1	bZIP	transcription	factor
Csm1_N	PF18504.1	gi|529043571|ref|YP_008369790.1|	-	0.0048	17.2	2.4	0.013	15.8	2.4	1.7	1	0	0	1	1	1	1	Csm1	N-terminal	domain
ATG16	PF08614.11	gi|529043571|ref|YP_008369790.1|	-	0.0062	16.8	2.2	0.0062	16.8	2.2	2.4	3	0	0	3	3	2	1	Autophagy	protein	16	(ATG16)
CENP-F_leu_zip	PF10473.9	gi|529043571|ref|YP_008369790.1|	-	0.0065	16.5	7.2	0.017	15.2	7.2	1.6	1	0	0	1	1	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Tropomyosin_1	PF12718.7	gi|529043571|ref|YP_008369790.1|	-	0.0075	16.4	3.9	0.016	15.3	3.9	1.5	1	0	0	1	1	1	1	Tropomyosin	like
Angiomotin_C	PF12240.8	gi|529043571|ref|YP_008369790.1|	-	0.01	15.4	0.4	0.019	14.5	0.4	1.4	1	0	0	1	1	1	0	Angiomotin	C	terminal
MCC-bdg_PDZ	PF10506.9	gi|529043571|ref|YP_008369790.1|	-	0.03	14.3	3.2	0.077	13.0	3.2	1.7	1	0	0	1	1	1	0	PDZ	domain	of	MCC-2	bdg	protein	for	Usher	syndrome
Troponin	PF00992.20	gi|529043571|ref|YP_008369790.1|	-	0.058	13.7	5.3	0.049	13.9	3.5	1.9	2	0	0	2	2	1	0	Troponin
Nsp1_C	PF05064.13	gi|529043571|ref|YP_008369790.1|	-	0.067	13.0	1.4	0.14	11.9	1.4	1.5	1	0	0	1	1	1	0	Nsp1-like	C-terminal	region
zf-FPG_IleRS	PF06827.14	gi|529043571|ref|YP_008369790.1|	-	0.07	13.0	2.8	7.3	6.6	0.1	3.2	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
BID	PF06393.11	gi|529043571|ref|YP_008369790.1|	-	0.082	12.4	1.6	0.091	12.3	0.0	1.8	2	0	0	2	2	2	0	BH3	interacting	domain	(BID)
TMF_TATA_bd	PF12325.8	gi|529043571|ref|YP_008369790.1|	-	0.085	13.1	8.3	0.24	11.6	8.3	1.7	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
Shugoshin_N	PF07558.11	gi|529043571|ref|YP_008369790.1|	-	0.12	12.2	1.2	0.29	11.0	1.2	1.6	1	0	0	1	1	1	0	Shugoshin	N-terminal	coiled-coil	region
Phage_GP20	PF06810.11	gi|529043571|ref|YP_008369790.1|	-	0.13	12.1	2.4	0.27	11.0	2.4	1.5	1	0	0	1	1	1	0	Phage	minor	structural	protein	GP20
SOUL	PF04832.12	gi|529043571|ref|YP_008369790.1|	-	0.14	12.3	0.1	0.27	11.4	0.1	1.4	1	0	0	1	1	1	0	SOUL	heme-binding	protein
YabA	PF06156.13	gi|529043571|ref|YP_008369790.1|	-	0.19	12.4	3.0	0.17	12.5	1.5	1.8	2	0	0	2	2	1	0	Initiation	control	protein	YabA
DDE_Tnp_IS240	PF13610.6	gi|529043571|ref|YP_008369790.1|	-	0.22	11.8	2.3	0.32	11.2	0.1	2.3	2	1	0	2	2	2	0	DDE	domain
Spc7	PF08317.11	gi|529043571|ref|YP_008369790.1|	-	0.51	9.2	6.7	0.31	9.9	2.6	2.0	2	0	0	2	2	2	0	Spc7	kinetochore	protein
TolA_bind_tri	PF16331.5	gi|529043571|ref|YP_008369790.1|	-	0.57	10.3	10.7	0.4	10.8	7.1	2.3	2	0	0	2	2	2	0	TolA	binding	protein	trimerisation
PKcGMP_CC	PF16808.5	gi|529043571|ref|YP_008369790.1|	-	0.9	9.4	14.7	0.12	12.3	4.8	2.8	1	1	1	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
Zn-ribbon_8	PF09723.10	gi|529043571|ref|YP_008369790.1|	-	1.2	9.3	5.4	19	5.5	0.2	2.7	2	0	0	2	2	2	0	Zinc	ribbon	domain
MPS2	PF17060.5	gi|529043571|ref|YP_008369790.1|	-	1.6	7.9	4.1	3.2	6.9	4.1	1.4	1	0	0	1	1	1	0	Monopolar	spindle	protein	2
APC_N_CC	PF16689.5	gi|529043571|ref|YP_008369790.1|	-	1.7	8.8	6.1	4.5	7.4	6.1	1.7	1	0	0	1	1	1	0	Coiled-coil	N-terminus	of	APC,	dimerisation	domain
DivIC	PF04977.15	gi|529043571|ref|YP_008369790.1|	-	2.3	8.0	9.8	0.29	10.9	4.5	2.2	2	0	0	2	2	2	0	Septum	formation	initiator
DUF4407	PF14362.6	gi|529043571|ref|YP_008369790.1|	-	2.5	7.4	5.1	0.54	9.6	1.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
UPF0242	PF06785.11	gi|529043571|ref|YP_008369790.1|	-	2.8	8.0	6.5	5	7.2	6.5	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
bZIP_2	PF07716.15	gi|529043571|ref|YP_008369790.1|	-	3.2	7.9	11.9	0.74	10.0	7.5	2.4	2	1	0	2	2	1	0	Basic	region	leucine	zipper
Rubredoxin_2	PF18073.1	gi|529043571|ref|YP_008369790.1|	-	3.3	7.5	6.0	4.7	7.0	0.3	2.6	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
TSC22	PF01166.18	gi|529043571|ref|YP_008369790.1|	-	5.2	7.5	8.4	21	5.5	4.9	3.2	2	1	1	3	3	3	0	TSC-22/dip/bun	family
AAA_23	PF13476.6	gi|529043572|ref|YP_008369791.1|	-	7.4e-26	91.9	8.9	7.4e-26	91.9	8.9	4.2	2	2	1	3	3	2	1	AAA	domain
AAA_15	PF13175.6	gi|529043572|ref|YP_008369791.1|	-	3.2e-13	50.1	14.4	3.2e-13	50.1	14.4	3.3	2	2	0	2	2	1	1	AAA	ATPase	domain
AAA_27	PF13514.6	gi|529043572|ref|YP_008369791.1|	-	5.9e-08	32.6	0.0	5.9e-08	32.6	0.0	3.7	3	1	0	3	3	3	1	AAA	domain
SMC_N	PF02463.19	gi|529043572|ref|YP_008369791.1|	-	1.8e-07	30.8	0.0	1.8e-07	30.8	0.0	3.0	2	1	0	2	2	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_13	PF13166.6	gi|529043572|ref|YP_008369791.1|	-	4.7e-07	28.9	25.8	0.00018	20.3	9.7	3.2	3	0	0	3	3	3	2	AAA	domain
T3SSipB	PF16535.5	gi|529043572|ref|YP_008369791.1|	-	1.3e-06	29.0	37.6	0.00053	20.5	4.5	3.3	2	1	1	3	3	3	2	Type	III	cell	invasion	protein	SipB
AAA_29	PF13555.6	gi|529043572|ref|YP_008369791.1|	-	6.8e-06	25.7	0.0	1.4e-05	24.7	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ABC_tran	PF00005.27	gi|529043572|ref|YP_008369791.1|	-	0.0003	21.3	0.0	0.0003	21.3	0.0	3.8	3	1	0	3	3	2	1	ABC	transporter
Spc7	PF08317.11	gi|529043572|ref|YP_008369791.1|	-	0.0004	19.4	51.6	0.0035	16.3	25.1	2.2	2	0	0	2	2	2	2	Spc7	kinetochore	protein
DUF4201	PF13870.6	gi|529043572|ref|YP_008369791.1|	-	0.00042	20.1	18.6	0.00042	20.1	18.6	3.5	2	2	1	3	3	3	1	Domain	of	unknown	function	(DUF4201)
MukB	PF04310.12	gi|529043572|ref|YP_008369791.1|	-	0.00065	19.6	0.0	0.00065	19.6	0.0	2.6	3	0	0	3	3	3	1	MukB	N-terminal
AAA_21	PF13304.6	gi|529043572|ref|YP_008369791.1|	-	0.0061	16.4	7.4	0.018	14.8	0.0	3.0	3	2	0	3	3	3	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RsgA_GTPase	PF03193.16	gi|529043572|ref|YP_008369791.1|	-	0.016	15.1	0.0	0.016	15.1	0.0	2.6	3	0	0	3	3	3	0	RsgA	GTPase
Ploopntkinase3	PF18751.1	gi|529043572|ref|YP_008369791.1|	-	0.051	13.5	0.1	0.16	11.9	0.0	1.8	2	0	0	2	2	1	0	P-loop	Nucleotide	Kinase3
AAA_22	PF13401.6	gi|529043572|ref|YP_008369791.1|	-	0.077	13.3	0.7	0.33	11.2	0.0	2.5	2	1	0	2	2	2	0	AAA	domain
Prominin	PF05478.11	gi|529043572|ref|YP_008369791.1|	-	0.19	9.6	20.0	0.079	10.9	6.5	2.3	2	0	0	2	2	2	0	Prominin
MMR_HSR1	PF01926.23	gi|529043572|ref|YP_008369791.1|	-	0.2	11.8	4.4	0.21	11.7	0.3	3.0	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
Golgin_A5	PF09787.9	gi|529043572|ref|YP_008369791.1|	-	0.24	10.8	59.6	0.86	9.0	24.5	3.3	2	1	1	3	3	3	0	Golgin	subfamily	A	member	5
HAUS6_N	PF14661.6	gi|529043572|ref|YP_008369791.1|	-	0.28	10.7	38.3	0.028	14.0	3.1	3.4	2	1	1	3	3	3	0	HAUS	augmin-like	complex	subunit	6	N-terminus
DUF812	PF05667.11	gi|529043572|ref|YP_008369791.1|	-	0.54	9.1	45.0	0.53	9.1	8.5	3.0	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF812)
FtsK_SpoIIIE	PF01580.18	gi|529043572|ref|YP_008369791.1|	-	0.63	9.3	3.6	0.67	9.3	0.0	2.7	3	0	0	3	3	3	0	FtsK/SpoIIIE	family
Tropomyosin_1	PF12718.7	gi|529043572|ref|YP_008369791.1|	-	0.74	10.0	65.7	1.7	8.8	3.2	4.0	2	2	2	4	4	4	0	Tropomyosin	like
ApoC-I	PF04691.12	gi|529043572|ref|YP_008369791.1|	-	0.8	9.7	14.3	0.15	12.0	0.4	4.4	4	0	0	4	4	3	0	Apolipoprotein	C-I	(ApoC-1)
TMPIT	PF07851.13	gi|529043572|ref|YP_008369791.1|	-	0.9	8.7	38.8	0.18	11.0	9.5	3.1	2	1	1	3	3	3	0	TMPIT-like	protein
DUF4407	PF14362.6	gi|529043572|ref|YP_008369791.1|	-	0.99	8.7	36.0	1.1	8.5	18.7	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
GAS	PF13851.6	gi|529043572|ref|YP_008369791.1|	-	2.1	7.7	50.8	0.074	12.4	14.4	3.1	2	1	0	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
CENP-Q	PF13094.6	gi|529043572|ref|YP_008369791.1|	-	2.7	8.2	35.6	0.7	10.1	19.6	2.7	2	0	0	2	2	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
CALCOCO1	PF07888.11	gi|529043572|ref|YP_008369791.1|	-	5.3	5.8	51.5	0.59	8.9	26.9	2.2	2	0	0	2	2	2	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
FapA	PF03961.13	gi|529043572|ref|YP_008369791.1|	-	6.3	5.3	39.7	2.3	6.7	12.0	3.1	2	1	1	3	3	3	0	Flagellar	Assembly	Protein	A
DUF2894	PF11445.8	gi|529043572|ref|YP_008369791.1|	-	8.6	6.8	15.9	14	6.1	9.2	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2894)
DUF3578	PF12102.8	gi|529043574|ref|YP_008369793.1|	-	8.5e-33	113.5	0.0	1.5e-32	112.7	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3578)
AAA_5	PF07728.14	gi|529043574|ref|YP_008369793.1|	-	2.2e-12	47.2	0.0	4.5e-12	46.2	0.0	1.6	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_16	PF13191.6	gi|529043574|ref|YP_008369793.1|	-	7.8e-06	26.4	0.1	2.6e-05	24.7	0.1	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|529043574|ref|YP_008369793.1|	-	6.5e-05	23.2	0.1	0.00048	20.4	0.0	2.6	3	1	0	3	3	2	1	AAA	domain
AAA_30	PF13604.6	gi|529043574|ref|YP_008369793.1|	-	7e-05	22.6	0.0	0.00025	20.8	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_19	PF13245.6	gi|529043574|ref|YP_008369793.1|	-	0.00015	22.1	0.0	0.00098	19.5	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
Mg_chelatase	PF01078.21	gi|529043574|ref|YP_008369793.1|	-	0.00041	19.8	0.0	0.0007	19.0	0.0	1.3	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA	PF00004.29	gi|529043574|ref|YP_008369793.1|	-	0.0008	19.8	0.0	0.0017	18.7	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_3	PF07726.11	gi|529043574|ref|YP_008369793.1|	-	0.0016	18.3	0.0	0.82	9.5	0.0	3.3	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
IstB_IS21	PF01695.17	gi|529043574|ref|YP_008369793.1|	-	0.0021	17.8	0.0	0.012	15.3	0.0	2.0	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_7	PF12775.7	gi|529043574|ref|YP_008369793.1|	-	0.003	17.1	0.0	0.0056	16.2	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
RNA_helicase	PF00910.22	gi|529043574|ref|YP_008369793.1|	-	0.0037	17.6	0.0	0.032	14.6	0.0	2.2	2	0	0	2	2	2	1	RNA	helicase
ABC_tran	PF00005.27	gi|529043574|ref|YP_008369793.1|	-	0.0059	17.1	0.0	0.015	15.8	0.0	1.8	1	1	0	1	1	1	1	ABC	transporter
AAA_28	PF13521.6	gi|529043574|ref|YP_008369793.1|	-	0.034	14.4	0.2	0.48	10.6	0.1	2.5	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|529043574|ref|YP_008369793.1|	-	0.04	14.1	0.0	0.096	12.8	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
Sigma54_activat	PF00158.26	gi|529043574|ref|YP_008369793.1|	-	0.041	13.6	0.0	0.1	12.3	0.0	1.6	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_11	PF13086.6	gi|529043574|ref|YP_008369793.1|	-	0.093	12.5	0.0	0.16	11.7	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|529043574|ref|YP_008369793.1|	-	0.12	12.2	0.0	0.23	11.4	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
T2SSE	PF00437.20	gi|529043574|ref|YP_008369793.1|	-	0.14	11.2	0.0	0.23	10.5	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
RuvB_N	PF05496.12	gi|529043574|ref|YP_008369793.1|	-	0.16	11.7	0.0	0.4	10.4	0.0	1.6	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_18	PF13238.6	gi|529043574|ref|YP_008369793.1|	-	0.18	12.4	0.0	0.47	11.0	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|529043574|ref|YP_008369793.1|	-	0.18	11.7	0.0	0.33	10.8	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
NTPase_1	PF03266.15	gi|529043574|ref|YP_008369793.1|	-	0.22	11.4	0.0	0.43	10.5	0.0	1.4	1	0	0	1	1	1	0	NTPase
McrBC	PF10117.9	gi|529043575|ref|YP_008369794.1|	-	0.00013	21.2	0.6	0.0066	15.6	0.8	2.3	2	1	0	2	2	2	2	McrBC	5-methylcytosine	restriction	system	component
DUF2357	PF09823.9	gi|529043575|ref|YP_008369794.1|	-	0.006	15.9	0.3	0.012	14.9	0.3	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2357)
DDE_Tnp_IS66	PF03050.14	gi|529043576|ref|YP_008369795.1|	-	1.3e-49	169.2	0.2	1.3e-49	169.2	0.2	1.5	2	0	0	2	2	2	1	Transposase	IS66	family
zf-IS66	PF13005.7	gi|529043576|ref|YP_008369795.1|	-	2.6e-06	27.7	5.5	2.6e-06	27.7	5.5	2.2	2	0	0	2	2	2	1	zinc-finger	binding	domain	of	transposase	IS66
PKcGMP_CC	PF16808.5	gi|529043576|ref|YP_008369795.1|	-	0.00053	19.8	11.2	0.0015	18.3	11.2	1.8	1	0	0	1	1	1	1	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
CCDC-167	PF15188.6	gi|529043576|ref|YP_008369795.1|	-	0.0073	16.6	0.8	0.022	15.1	0.8	1.7	1	0	0	1	1	1	1	Coiled-coil	domain-containing	protein	167
ERM	PF00769.19	gi|529043576|ref|YP_008369795.1|	-	0.01	15.7	4.8	0.022	14.6	4.1	1.9	2	0	0	2	2	2	0	Ezrin/radixin/moesin	family
SPATA24	PF15175.6	gi|529043576|ref|YP_008369795.1|	-	0.013	15.4	0.5	0.026	14.4	0.5	1.4	1	0	0	1	1	1	0	Spermatogenesis-associated	protein	24
DZR	PF12773.7	gi|529043576|ref|YP_008369795.1|	-	0.052	13.6	2.6	0.12	12.4	2.6	1.6	1	0	0	1	1	1	0	Double	zinc	ribbon
SlyX	PF04102.12	gi|529043576|ref|YP_008369795.1|	-	0.054	14.1	2.0	0.19	12.4	2.0	2.0	1	0	0	1	1	1	0	SlyX
Med4	PF10018.9	gi|529043576|ref|YP_008369795.1|	-	0.074	12.7	0.7	0.15	11.8	0.7	1.5	1	0	0	1	1	1	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
HSBP1	PF06825.12	gi|529043576|ref|YP_008369795.1|	-	0.092	12.6	5.3	0.15	12.0	1.5	2.3	1	1	1	2	2	2	0	Heat	shock	factor	binding	protein	1
FTA4	PF13093.6	gi|529043576|ref|YP_008369795.1|	-	0.13	12.1	2.9	0.5	10.2	0.2	2.4	2	1	0	2	2	2	0	Kinetochore	complex	Fta4	of	Sim4	subunit,	or	CENP-50
DivIC	PF04977.15	gi|529043576|ref|YP_008369795.1|	-	0.15	11.8	5.0	0.11	12.2	2.2	2.2	2	0	0	2	2	2	0	Septum	formation	initiator
DDE_Tnp_IS240	PF13610.6	gi|529043576|ref|YP_008369795.1|	-	0.17	12.1	1.2	0.28	11.4	0.0	2.0	2	1	0	2	2	2	0	DDE	domain
zf-FPG_IleRS	PF06827.14	gi|529043576|ref|YP_008369795.1|	-	0.24	11.3	5.1	6	6.8	0.3	3.2	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
Prefoldin_2	PF01920.20	gi|529043576|ref|YP_008369795.1|	-	0.28	11.2	6.0	0.71	9.9	6.0	1.6	1	0	0	1	1	1	0	Prefoldin	subunit
UPF0449	PF15136.6	gi|529043576|ref|YP_008369795.1|	-	0.28	11.7	5.9	2.5	8.6	2.2	2.7	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0449
HOOK	PF05622.12	gi|529043576|ref|YP_008369795.1|	-	0.55	8.3	3.7	0.85	7.7	3.7	1.2	1	0	0	1	1	1	0	HOOK	protein
Zn-ribbon_8	PF09723.10	gi|529043576|ref|YP_008369795.1|	-	0.85	9.8	5.5	14	5.9	0.8	2.6	2	0	0	2	2	2	0	Zinc	ribbon	domain
YhfH	PF14149.6	gi|529043576|ref|YP_008369795.1|	-	1.6	8.8	4.9	1.3	9.1	1.0	2.3	2	0	0	2	2	2	0	YhfH-like	protein
ABC_tran_CTD	PF16326.5	gi|529043576|ref|YP_008369795.1|	-	4	7.8	11.7	0.24	11.7	5.3	2.4	3	0	0	3	3	2	0	ABC	transporter	C-terminal	domain
MethyltransfD12	PF02086.15	gi|529043577|ref|YP_008369796.1|	-	7.5e-52	176.6	0.7	9.5e-52	176.2	0.7	1.1	1	0	0	1	1	1	1	D12	class	N6	adenine-specific	DNA	methyltransferase
YlbE	PF14003.6	gi|529043577|ref|YP_008369796.1|	-	0.12	12.8	0.4	0.27	11.7	0.4	1.5	1	0	0	1	1	1	0	YlbE-like	protein
HATPase_c_3	PF13589.6	gi|529043578|ref|YP_008369797.1|	-	2.5e-16	59.8	0.0	5.5e-16	58.6	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.26	gi|529043578|ref|YP_008369797.1|	-	3.5e-07	30.7	0.0	8.7e-07	29.4	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DDE_Tnp_1	PF01609.21	gi|529043582|ref|YP_008369801.1|	-	6.3e-29	101.2	0.0	8.2e-29	100.8	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.12	gi|529043582|ref|YP_008369801.1|	-	0.01	15.1	0.0	0.014	14.6	0.0	1.1	1	0	0	1	1	1	0	Archaeal	putative	transposase	ISC1217
Rop-like	PF05082.13	gi|529043582|ref|YP_008369801.1|	-	0.07	13.0	0.7	2.9	7.8	0.0	2.7	3	0	0	3	3	3	0	Rop-like
DDE_Tnp_1_4	PF13701.6	gi|529043582|ref|YP_008369801.1|	-	0.12	10.6	0.0	0.26	9.5	0.0	1.5	1	1	1	2	2	2	0	Transposase	DDE	domain	group	1
DDE_Tnp_1	PF01609.21	gi|529043583|ref|YP_008369802.1|	-	7.6e-13	48.6	1.3	1.5e-12	47.6	1.3	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.6	gi|529043583|ref|YP_008369802.1|	-	0.012	16.0	1.2	0.033	14.6	0.1	2.1	2	1	0	2	2	2	0	Transposase	DDE	domain
AAA_15	PF13175.6	gi|529043584|ref|YP_008369803.1|	-	6.5e-23	82.0	0.7	1.9e-14	54.2	0.0	3.1	3	0	0	3	3	3	2	AAA	ATPase	domain
AAA_21	PF13304.6	gi|529043584|ref|YP_008369803.1|	-	3.1e-17	63.3	5.5	6.4e-12	45.9	1.1	3.0	3	0	0	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|529043584|ref|YP_008369803.1|	-	2.8e-06	26.9	0.0	0.00015	21.3	0.0	2.3	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|529043584|ref|YP_008369803.1|	-	0.00017	22.2	0.1	0.0071	16.9	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
AAA_29	PF13555.6	gi|529043584|ref|YP_008369803.1|	-	0.00076	19.2	0.0	0.0016	18.2	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_27	PF13514.6	gi|529043584|ref|YP_008369803.1|	-	0.013	15.1	0.0	0.025	14.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
DUF2813	PF11398.8	gi|529043584|ref|YP_008369803.1|	-	0.14	11.3	0.0	4.5	6.4	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2813)
NYD-SP28	PF14772.6	gi|529043584|ref|YP_008369803.1|	-	1	9.4	4.9	7.5	6.7	3.4	2.4	2	0	0	2	2	2	0	Sperm	tail
DUF4404	PF14357.6	gi|529043584|ref|YP_008369803.1|	-	2.4	8.9	4.7	26	5.5	1.6	3.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4404)
AIPR	PF10592.9	gi|529043585|ref|YP_008369804.1|	-	4.4e-20	72.5	0.4	6.8e-20	71.9	0.4	1.3	1	0	0	1	1	1	1	AIPR	protein
HTH_23	PF13384.6	gi|529043589|ref|YP_008369808.1|	-	0.017	14.9	0.0	0.029	14.2	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_38	PF13936.6	gi|529043589|ref|YP_008369808.1|	-	0.045	13.5	0.0	0.07	12.9	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
RepB	PF07506.11	gi|529043589|ref|YP_008369808.1|	-	0.12	12.5	0.0	0.13	12.3	0.0	1.1	1	0	0	1	1	1	0	RepB	plasmid	partitioning	protein
Methyltransf_11	PF08241.12	gi|529043591|ref|YP_008369810.1|	-	5.6e-22	78.2	0.0	8.3e-22	77.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|529043591|ref|YP_008369810.1|	-	7.7e-22	77.7	0.0	9.7e-22	77.4	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|529043591|ref|YP_008369810.1|	-	3.3e-21	75.8	0.0	5.2e-21	75.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|529043591|ref|YP_008369810.1|	-	1.9e-16	60.1	0.0	2.4e-16	59.8	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.6	gi|529043591|ref|YP_008369810.1|	-	1.3e-15	57.7	0.0	1.7e-15	57.3	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|529043591|ref|YP_008369810.1|	-	4.8e-11	43.3	0.0	7.2e-11	42.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|529043591|ref|YP_008369810.1|	-	7.2e-08	32.2	0.0	1.1e-07	31.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_32	PF13679.6	gi|529043591|ref|YP_008369810.1|	-	7.5e-06	26.0	0.0	1.2e-05	25.3	0.0	1.3	1	1	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|529043591|ref|YP_008369810.1|	-	0.00014	21.7	0.0	0.00023	21.0	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_2	PF00891.18	gi|529043591|ref|YP_008369810.1|	-	0.0002	20.7	0.0	0.00025	20.4	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase	domain
TPMT	PF05724.11	gi|529043591|ref|YP_008369810.1|	-	0.00056	19.6	0.0	0.00086	19.0	0.0	1.4	1	0	0	1	1	1	1	Thiopurine	S-methyltransferase	(TPMT)
PrmA	PF06325.13	gi|529043591|ref|YP_008369810.1|	-	0.00091	18.7	0.0	0.0011	18.5	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
DREV	PF05219.12	gi|529043591|ref|YP_008369810.1|	-	0.001	18.2	0.0	0.0013	17.8	0.0	1.1	1	0	0	1	1	1	1	DREV	methyltransferase
MetW	PF07021.12	gi|529043591|ref|YP_008369810.1|	-	0.0024	17.5	0.0	0.0034	17.0	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
CMAS	PF02353.20	gi|529043591|ref|YP_008369810.1|	-	0.0029	16.9	0.0	0.004	16.5	0.0	1.3	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_18	PF12847.7	gi|529043591|ref|YP_008369810.1|	-	0.0059	16.5	0.0	0.0091	15.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
TehB	PF03848.14	gi|529043591|ref|YP_008369810.1|	-	0.0072	15.8	0.0	0.0096	15.3	0.0	1.2	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
UPF0020	PF01170.18	gi|529043591|ref|YP_008369810.1|	-	0.016	14.9	0.1	0.048	13.3	0.0	1.7	1	1	1	2	2	2	0	Putative	RNA	methylase	family	UPF0020
GidB	PF02527.15	gi|529043591|ref|YP_008369810.1|	-	0.018	14.3	0.0	0.062	12.6	0.0	1.8	1	1	0	1	1	1	0	rRNA	small	subunit	methyltransferase	G
NodS	PF05401.11	gi|529043591|ref|YP_008369810.1|	-	0.034	13.8	0.0	0.042	13.5	0.0	1.2	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
Methyltransf_9	PF08003.11	gi|529043591|ref|YP_008369810.1|	-	0.055	12.4	0.0	0.07	12.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1698)
AdoMet_MTase	PF07757.13	gi|529043591|ref|YP_008369810.1|	-	0.098	13.0	0.0	0.16	12.3	0.0	1.4	1	0	0	1	1	1	0	Predicted	AdoMet-dependent	methyltransferase
RrnaAD	PF00398.20	gi|529043591|ref|YP_008369810.1|	-	0.12	11.5	0.0	0.14	11.2	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Methyltransf_4	PF02390.17	gi|529043591|ref|YP_008369810.1|	-	0.12	11.8	0.0	0.25	10.8	0.0	1.5	1	1	1	2	2	2	0	Putative	methyltransferase
SRAP	PF02586.14	gi|529043592|ref|YP_008369811.1|	-	6.2e-58	195.9	0.0	7e-58	195.8	0.0	1.0	1	0	0	1	1	1	1	SOS	response	associated	peptidase	(SRAP)
Erythro_esteras	PF05139.14	gi|529043593|ref|YP_008369812.1|	-	0.035	13.9	0.0	0.035	13.9	0.0	1.0	1	0	0	1	1	1	0	Erythromycin	esterase
Cofac_haem_bdg	PF04187.13	gi|529043593|ref|YP_008369812.1|	-	0.18	11.8	0.0	0.2	11.6	0.0	1.0	1	0	0	1	1	1	0	Haem-binding	uptake,	Tiki	superfamily,	ChaN
NERD	PF08378.11	gi|529043595|ref|YP_008369814.1|	-	0.026	15.0	0.0	0.058	13.9	0.0	1.5	1	0	0	1	1	1	0	Nuclease-related	domain
DUF1272	PF06906.11	gi|529043595|ref|YP_008369814.1|	-	0.07	13.2	0.6	0.13	12.3	0.6	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
DDE_Tnp_1	PF01609.21	gi|529043597|ref|YP_008369816.1|	-	0.0078	15.9	0.0	0.035	13.7	0.0	2.0	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF1863	PF08937.11	gi|529043598|ref|YP_008369817.1|	-	3.2e-15	56.6	0.0	4.7e-14	52.8	0.0	2.0	2	0	0	2	2	2	1	MTH538	TIR-like	domain	(DUF1863)
DDE_Tnp_1	PF01609.21	gi|529043600|ref|YP_008369819.1|	-	9.6e-08	31.9	0.3	2e-07	30.9	0.3	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
TFR_dimer	PF04253.15	gi|529043601|ref|YP_008369820.1|	-	0.04	14.0	0.5	0.095	12.8	0.5	1.6	1	0	0	1	1	1	0	Transferrin	receptor-like	dimerisation	domain
AbiJ_NTD5	PF18865.1	gi|529043601|ref|YP_008369820.1|	-	0.053	13.3	0.1	0.13	12.1	0.1	1.7	1	0	0	1	1	1	0	AbiJ	N-terminal	domain	5
DUF327	PF03885.13	gi|529043601|ref|YP_008369820.1|	-	0.2	11.6	2.4	0.7	9.8	0.4	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF327)
Rad51	PF08423.11	gi|529043602|ref|YP_008369821.1|	-	0.049	12.9	0.0	0.2	10.9	0.0	1.8	1	1	0	1	1	1	0	Rad51
Laminin_I	PF06008.14	gi|529043603|ref|YP_008369822.1|	-	0.012	15.3	3.4	0.015	15.0	3.4	1.2	1	0	0	1	1	1	0	Laminin	Domain	I
CorA	PF01544.18	gi|529043603|ref|YP_008369822.1|	-	0.015	14.7	1.7	0.017	14.5	1.7	1.0	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
XhlA	PF10779.9	gi|529043603|ref|YP_008369822.1|	-	0.12	12.6	1.5	0.22	11.8	1.5	1.4	1	0	0	1	1	1	0	Haemolysin	XhlA
HXXSHH	PF07586.11	gi|529043603|ref|YP_008369822.1|	-	0.42	10.1	4.3	1.4	8.4	1.1	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1552)
Sugarporin_N	PF11471.8	gi|529043603|ref|YP_008369822.1|	-	0.43	10.6	7.3	0.22	11.5	4.3	2.1	2	1	0	2	2	2	0	Maltoporin	periplasmic	N-terminal	extension
PSK_trans_fac	PF07704.11	gi|529043603|ref|YP_008369822.1|	-	3.8	8.3	9.1	3.1e+02	2.2	9.1	2.1	1	1	0	1	1	1	0	Rv0623-like	transcription	factor
DNA_pol_B	PF00136.21	gi|529043605|ref|YP_008369824.1|	-	2.7e-27	95.6	0.0	5e-27	94.7	0.0	1.3	1	1	0	1	1	1	1	DNA	polymerase	family	B
Glycos_transf_N	PF04413.16	gi|529043605|ref|YP_008369824.1|	-	0.014	15.0	0.0	0.026	14.2	0.0	1.3	1	0	0	1	1	1	0	3-Deoxy-D-manno-octulosonic-acid	transferase	(kdotransferase)
Cdc6_C	PF09079.11	gi|529043606|ref|YP_008369825.1|	-	1.5e-15	56.9	0.0	3.2e-15	55.9	0.0	1.6	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|529043606|ref|YP_008369825.1|	-	2.4e-12	47.3	0.0	5.2e-12	46.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|529043606|ref|YP_008369825.1|	-	1.6e-08	35.1	1.8	8.4e-08	32.8	0.6	2.5	2	1	0	2	2	2	1	AAA	ATPase	domain
ATPase_2	PF01637.18	gi|529043606|ref|YP_008369825.1|	-	6.7e-05	22.9	0.0	0.00017	21.6	0.0	1.6	1	1	1	2	2	2	1	ATPase	domain	predominantly	from	Archaea
AAA_5	PF07728.14	gi|529043606|ref|YP_008369825.1|	-	0.00024	21.1	0.0	0.00099	19.1	0.0	2.2	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
Sigma54_activat	PF00158.26	gi|529043606|ref|YP_008369825.1|	-	0.00028	20.6	0.0	0.00051	19.8	0.0	1.4	1	0	0	1	1	1	1	Sigma-54	interaction	domain
DUF815	PF05673.13	gi|529043606|ref|YP_008369825.1|	-	0.00088	18.5	0.0	0.0014	17.8	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_30	PF13604.6	gi|529043606|ref|YP_008369825.1|	-	0.002	17.9	0.0	0.004	16.9	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
RNA_helicase	PF00910.22	gi|529043606|ref|YP_008369825.1|	-	0.0022	18.4	0.0	0.045	14.1	0.0	2.6	1	1	0	1	1	1	1	RNA	helicase
TniB	PF05621.11	gi|529043606|ref|YP_008369825.1|	-	0.0088	15.5	0.0	0.016	14.7	0.0	1.4	1	0	0	1	1	1	1	Bacterial	TniB	protein
DUF2791	PF10923.8	gi|529043606|ref|YP_008369825.1|	-	0.02	13.7	0.1	0.41	9.4	0.0	2.1	2	0	0	2	2	2	0	P-loop	Domain	of	unknown	function	(DUF2791)
NB-ARC	PF00931.22	gi|529043606|ref|YP_008369825.1|	-	0.021	14.0	0.0	0.035	13.3	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
Adeno_IVa2	PF02456.15	gi|529043606|ref|YP_008369825.1|	-	0.022	13.5	0.0	0.032	13.0	0.0	1.2	1	0	0	1	1	1	0	Adenovirus	IVa2	protein
AAA_19	PF13245.6	gi|529043606|ref|YP_008369825.1|	-	0.026	14.8	0.0	0.085	13.2	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|529043606|ref|YP_008369825.1|	-	0.032	13.8	0.0	0.059	12.9	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA	PF00004.29	gi|529043606|ref|YP_008369825.1|	-	0.048	14.1	0.7	0.24	11.8	0.1	2.5	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_32	PF13654.6	gi|529043606|ref|YP_008369825.1|	-	0.049	12.4	0.5	1.6	7.4	0.2	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_14	PF13173.6	gi|529043606|ref|YP_008369825.1|	-	0.072	13.1	0.1	0.39	10.8	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|529043606|ref|YP_008369825.1|	-	0.12	12.3	0.0	0.23	11.4	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
PIF1	PF05970.14	gi|529043606|ref|YP_008369825.1|	-	0.12	11.5	0.0	0.23	10.6	0.0	1.4	1	0	0	1	1	1	0	PIF1-like	helicase
ABC_tran	PF00005.27	gi|529043606|ref|YP_008369825.1|	-	0.13	12.8	0.0	5.2	7.6	0.0	2.9	2	1	0	2	2	2	0	ABC	transporter
Torsin	PF06309.11	gi|529043606|ref|YP_008369825.1|	-	0.14	12.2	0.0	0.47	10.6	0.0	1.8	2	0	0	2	2	2	0	Torsin
Mg_chelatase_C	PF13335.6	gi|529043606|ref|YP_008369825.1|	-	0.27	11.9	3.6	0.62	10.7	0.9	2.4	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI	C-terminal
MarR_2	PF12802.7	gi|529043608|ref|YP_008369827.1|	-	9.7e-17	60.6	3.0	6.5e-10	38.8	1.1	2.7	2	0	0	2	2	2	2	MarR	family
TrmB	PF01978.19	gi|529043608|ref|YP_008369827.1|	-	1.4e-10	40.9	0.2	0.0002	21.1	0.0	2.5	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|529043608|ref|YP_008369827.1|	-	9.2e-09	34.7	0.1	0.0053	16.3	0.0	2.5	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|529043608|ref|YP_008369827.1|	-	3e-08	33.5	0.0	0.0015	18.4	0.1	2.5	2	0	0	2	2	2	2	MarR	family
HTH_IclR	PF09339.10	gi|529043608|ref|YP_008369827.1|	-	4.4e-08	32.8	0.1	0.0021	17.8	0.0	2.8	3	0	0	3	3	2	2	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|529043608|ref|YP_008369827.1|	-	1.9e-07	31.3	0.0	0.021	15.1	0.0	2.4	2	0	0	2	2	2	2	Transcriptional	regulator
HTH_27	PF13463.6	gi|529043608|ref|YP_008369827.1|	-	2.8e-07	30.9	1.2	3.8e-06	27.3	0.4	2.3	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|529043608|ref|YP_008369827.1|	-	2.9e-07	30.4	0.5	0.035	14.2	0.2	2.7	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|529043608|ref|YP_008369827.1|	-	5.9e-07	29.4	0.0	0.0007	19.5	0.0	2.5	2	0	0	2	2	2	2	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.6	gi|529043608|ref|YP_008369827.1|	-	2e-06	27.4	0.1	0.013	15.2	0.0	2.5	2	0	0	2	2	2	2	Homeodomain-like	domain
HTH_29	PF13551.6	gi|529043608|ref|YP_008369827.1|	-	5.8e-06	26.2	0.3	0.059	13.4	0.0	2.5	2	0	0	2	2	2	2	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|529043608|ref|YP_008369827.1|	-	2.3e-05	24.4	0.2	0.021	15.0	0.0	2.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|529043608|ref|YP_008369827.1|	-	8.5e-05	22.3	0.0	0.2	11.5	0.0	2.5	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
GntR	PF00392.21	gi|529043608|ref|YP_008369827.1|	-	0.0003	20.4	0.2	1.3	8.7	0.0	2.8	3	0	0	3	3	3	2	Bacterial	regulatory	proteins,	gntR	family
DUF746	PF05344.11	gi|529043608|ref|YP_008369827.1|	-	0.0022	17.8	0.0	0.023	14.5	0.0	2.4	2	0	0	2	2	2	1	Domain	of	Unknown	Function	(DUF746)
Penicillinase_R	PF03965.16	gi|529043608|ref|YP_008369827.1|	-	0.0023	18.3	0.0	2.6	8.4	0.0	2.3	2	0	0	2	2	2	2	Penicillinase	repressor
HTH_38	PF13936.6	gi|529043608|ref|YP_008369827.1|	-	0.003	17.3	0.9	2.9	7.7	0.0	2.8	3	0	0	3	3	3	2	Helix-turn-helix	domain
Crp	PF00325.20	gi|529043608|ref|YP_008369827.1|	-	0.0048	16.5	0.9	0.026	14.2	0.3	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	crp	family
Sigma70_r4	PF04545.16	gi|529043608|ref|YP_008369827.1|	-	0.0082	15.6	0.1	2.2	7.9	0.0	2.4	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_11	PF08279.12	gi|529043608|ref|YP_008369827.1|	-	0.022	14.7	0.1	1.7	8.6	0.1	2.6	2	0	0	2	2	2	0	HTH	domain
HTH_41	PF14502.6	gi|529043608|ref|YP_008369827.1|	-	0.028	14.1	0.0	0.11	12.2	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
LZ_Tnp_IS481	PF13011.6	gi|529043608|ref|YP_008369827.1|	-	0.03	14.8	0.0	0.068	13.7	0.0	1.6	1	0	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
RPA_C	PF08784.11	gi|529043608|ref|YP_008369827.1|	-	0.04	14.6	0.0	0.094	13.4	0.0	1.6	2	0	0	2	2	1	0	Replication	protein	A	C	terminal
PqqD	PF05402.12	gi|529043608|ref|YP_008369827.1|	-	0.099	13.0	0.5	6.4	7.2	0.0	3.7	4	2	0	4	4	3	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
PaaX	PF07848.12	gi|529043608|ref|YP_008369827.1|	-	0.11	12.7	0.3	0.4	10.9	0.1	2.1	3	0	0	3	3	1	0	PaaX-like	protein
HTH_47	PF16221.5	gi|529043608|ref|YP_008369827.1|	-	0.12	11.9	0.0	6.8	6.3	0.0	2.6	3	0	0	3	3	3	0	winged	helix-turn-helix
HTH_Tnp_Tc3_1	PF11427.8	gi|529043608|ref|YP_008369827.1|	-	0.15	12.0	0.4	19	5.2	0.0	3.1	3	0	0	3	3	3	0	Tc3	transposase
PIN	PF01850.21	gi|529043609|ref|YP_008369828.1|	-	3.6e-12	46.8	0.1	4.3e-12	46.6	0.1	1.0	1	0	0	1	1	1	1	PIN	domain
MazE_antitoxin	PF04014.18	gi|529043610|ref|YP_008369829.1|	-	0.00011	22.1	0.1	0.00015	21.6	0.1	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|529043610|ref|YP_008369829.1|	-	0.0023	18.3	0.0	0.003	18.0	0.0	1.1	1	0	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
SWIM	PF04434.17	gi|529043611|ref|YP_008369830.1|	-	0.0016	18.1	0.7	0.0049	16.5	0.7	1.9	1	1	0	1	1	1	1	SWIM	zinc	finger
HTH_23	PF13384.6	gi|529043612|ref|YP_008369831.1|	-	1.3e-05	24.8	0.1	2.9e-05	23.7	0.1	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
TrmB	PF01978.19	gi|529043612|ref|YP_008369831.1|	-	0.00035	20.4	0.0	0.00057	19.7	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_29	PF13551.6	gi|529043612|ref|YP_008369831.1|	-	0.0012	18.8	0.0	0.0023	17.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|529043612|ref|YP_008369831.1|	-	0.018	15.2	0.1	0.048	13.8	0.1	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR	PF01047.22	gi|529043612|ref|YP_008369831.1|	-	0.026	14.4	0.0	0.045	13.7	0.0	1.3	1	0	0	1	1	1	0	MarR	family
Aminoglyc_resit	PF10706.9	gi|529043613|ref|YP_008369832.1|	-	0.00021	21.0	0.1	0.12	12.1	0.0	2.2	1	1	1	2	2	2	2	Aminoglycoside-2''-adenylyltransferase
NTP_transf_5	PF14907.6	gi|529043613|ref|YP_008369832.1|	-	0.002	17.8	0.1	0.0027	17.4	0.1	1.4	1	0	0	1	1	1	1	Uncharacterised	nucleotidyltransferase
AbiEii	PF08843.11	gi|529043613|ref|YP_008369832.1|	-	0.0049	16.9	1.0	0.014	15.3	1.0	1.9	1	1	0	1	1	1	1	Nucleotidyl	transferase	AbiEii	toxin,	Type	IV	TA	system
Peptidase_M78	PF06114.13	gi|529043614|ref|YP_008369833.1|	-	7.3e-05	22.7	0.1	0.00012	22.0	0.1	1.4	1	0	0	1	1	1	1	IrrE	N-terminal-like	domain
Aminopep	PF10023.9	gi|529043614|ref|YP_008369833.1|	-	0.018	14.4	0.0	0.037	13.4	0.0	1.5	1	0	0	1	1	1	0	Putative	aminopeptidase
SprT-like	PF10263.9	gi|529043614|ref|YP_008369833.1|	-	0.039	13.8	0.4	0.18	11.6	0.1	2.0	2	0	0	2	2	2	0	SprT-like	family
OGG_N	PF07934.12	gi|529043614|ref|YP_008369833.1|	-	0.11	12.6	0.2	1.3	9.1	0.0	2.2	2	1	0	2	2	2	0	8-oxoguanine	DNA	glycosylase,	N-terminal	domain
DUF2059	PF09832.9	gi|529043617|ref|YP_008369836.1|	-	0.072	13.2	0.3	2.4	8.3	0.0	2.5	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2059)
Rrf2	PF02082.20	gi|529043622|ref|YP_008369841.1|	-	0.004	17.5	0.0	0.35	11.3	0.0	2.4	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|529043622|ref|YP_008369841.1|	-	0.0058	16.4	0.0	0.01	15.6	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|529043622|ref|YP_008369841.1|	-	0.029	14.2	0.1	0.05	13.5	0.1	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_36	PF13730.6	gi|529043622|ref|YP_008369841.1|	-	0.077	13.0	0.0	0.13	12.2	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_28	PF13518.6	gi|529043622|ref|YP_008369841.1|	-	0.079	13.1	0.2	0.15	12.2	0.0	1.6	2	0	0	2	2	2	0	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|529043622|ref|YP_008369841.1|	-	0.084	12.8	0.0	0.19	11.7	0.0	1.5	1	0	0	1	1	1	0	MarR	family
Phage_NinH	PF06322.11	gi|529043622|ref|YP_008369841.1|	-	0.085	12.8	0.0	0.15	12.0	0.0	1.4	1	0	0	1	1	1	0	Phage	NinH	protein
TSC22	PF01166.18	gi|529043623|ref|YP_008369842.1|	-	0.019	15.2	0.1	0.029	14.7	0.1	1.2	1	0	0	1	1	1	0	TSC-22/dip/bun	family
HTH_10	PF04967.12	gi|529043625|ref|YP_008369844.1|	-	2.5e-18	65.6	0.2	6.6e-18	64.2	0.2	1.8	1	0	0	1	1	1	1	HTH	DNA	binding	domain
MarR	PF01047.22	gi|529043625|ref|YP_008369844.1|	-	0.0055	16.6	0.2	0.022	14.7	0.1	2.1	2	1	0	2	2	2	1	MarR	family
MarR_2	PF12802.7	gi|529043625|ref|YP_008369844.1|	-	0.006	16.5	0.1	0.01	15.7	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_3	PF01381.22	gi|529043625|ref|YP_008369844.1|	-	0.0078	16.3	0.1	0.05	13.7	0.1	2.3	2	0	0	2	2	2	1	Helix-turn-helix
HTH_17	PF12728.7	gi|529043625|ref|YP_008369844.1|	-	0.011	15.9	0.0	0.026	14.7	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_37	PF13744.6	gi|529043625|ref|YP_008369844.1|	-	0.012	15.6	0.1	0.023	14.7	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|529043625|ref|YP_008369844.1|	-	0.014	15.3	1.2	0.035	14.1	0.5	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_Crp_2	PF13545.6	gi|529043625|ref|YP_008369844.1|	-	0.024	14.6	0.3	0.045	13.7	0.3	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|529043625|ref|YP_008369844.1|	-	0.028	14.0	0.1	0.063	12.8	0.1	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_31	PF13560.6	gi|529043625|ref|YP_008369844.1|	-	0.04	14.3	0.6	0.27	11.6	0.3	2.3	2	1	0	2	2	2	0	Helix-turn-helix	domain
AbiEi_4	PF13338.6	gi|529043625|ref|YP_008369844.1|	-	0.04	14.1	0.1	0.17	12.1	0.1	2.0	2	0	0	2	2	2	0	Transcriptional	regulator,	AbiEi	antitoxin
HTH_5	PF01022.20	gi|529043625|ref|YP_008369844.1|	-	0.047	13.6	0.0	0.096	12.6	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_psq	PF05225.16	gi|529043625|ref|YP_008369844.1|	-	0.048	13.4	0.4	0.31	10.8	0.0	2.4	2	0	0	2	2	2	0	helix-turn-helix,	Psq	domain
RelB	PF04221.12	gi|529043625|ref|YP_008369844.1|	-	0.066	13.2	0.0	0.11	12.4	0.0	1.4	1	0	0	1	1	1	0	RelB	antitoxin
HTH_23	PF13384.6	gi|529043625|ref|YP_008369844.1|	-	0.066	13.0	0.0	0.13	12.1	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
TetR_N	PF00440.23	gi|529043625|ref|YP_008369844.1|	-	0.075	12.8	0.0	0.17	11.7	0.0	1.7	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
HTH_Tnp_1_2	PF13022.6	gi|529043625|ref|YP_008369844.1|	-	0.083	13.0	0.0	0.14	12.3	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	of	insertion	element	transposase
Sigma70_r4	PF04545.16	gi|529043625|ref|YP_008369844.1|	-	0.11	12.0	1.0	0.3	10.6	1.0	1.8	1	1	0	1	1	1	0	Sigma-70,	region	4
HTH_28	PF13518.6	gi|529043625|ref|YP_008369844.1|	-	0.15	12.2	0.1	0.39	10.9	0.1	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
Aldo_ket_red	PF00248.21	gi|529043626|ref|YP_008369845.1|	-	1.2e-49	169.1	0.0	2.1e-47	161.7	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
Cupin_2	PF07883.11	gi|529043627|ref|YP_008369846.1|	-	3.2e-14	52.4	1.8	4.5e-14	51.9	1.8	1.2	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.19	gi|529043627|ref|YP_008369846.1|	-	5.7e-10	39.2	0.1	7.3e-10	38.9	0.1	1.1	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_1	PF00190.22	gi|529043627|ref|YP_008369846.1|	-	0.00019	21.1	0.0	0.00022	20.9	0.0	1.1	1	0	0	1	1	1	1	Cupin
Pirin_C	PF05726.13	gi|529043627|ref|YP_008369846.1|	-	0.00068	20.0	0.0	0.0008	19.7	0.0	1.2	1	0	0	1	1	1	1	Pirin	C-terminal	cupin	domain
Cupin_3	PF05899.12	gi|529043627|ref|YP_008369846.1|	-	0.0023	17.6	0.3	0.005	16.5	0.3	1.7	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
Cupin_6	PF12852.7	gi|529043627|ref|YP_008369846.1|	-	0.0041	16.9	0.0	0.0046	16.7	0.0	1.1	1	0	0	1	1	1	1	Cupin
Auxin_BP	PF02041.16	gi|529043627|ref|YP_008369846.1|	-	0.081	12.6	0.0	0.093	12.4	0.0	1.1	1	0	0	1	1	1	0	Auxin	binding	protein
Ectoine_synth	PF06339.12	gi|529043627|ref|YP_008369846.1|	-	0.084	13.1	0.0	0.095	12.9	0.0	1.1	1	0	0	1	1	1	0	Ectoine	synthase
Aldo_ket_red	PF00248.21	gi|529043628|ref|YP_008369847.1|	-	7.8e-73	245.2	0.0	8.7e-73	245.1	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
RHH_5	PF07878.11	gi|529043628|ref|YP_008369847.1|	-	0.11	12.4	0.1	0.23	11.3	0.1	1.5	1	0	0	1	1	1	0	CopG-like	RHH_1	or	ribbon-helix-helix	domain,	RHH_5
Flavodoxin_4	PF12682.7	gi|529043629|ref|YP_008369848.1|	-	2e-15	56.8	0.0	2.8e-15	56.4	0.0	1.2	1	0	0	1	1	1	1	Flavodoxin
Flavodoxin_5	PF12724.7	gi|529043629|ref|YP_008369848.1|	-	4.4e-07	30.2	0.0	0.00032	21.0	0.0	2.2	1	1	1	2	2	2	2	Flavodoxin	domain
FMN_red	PF03358.15	gi|529043629|ref|YP_008369848.1|	-	7.6e-05	22.5	0.0	0.00011	22.0	0.0	1.3	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_1	PF00258.25	gi|529043629|ref|YP_008369848.1|	-	0.00011	22.4	0.0	0.016	15.4	0.0	2.3	1	1	0	1	1	1	1	Flavodoxin
Flavodoxin_3	PF12641.7	gi|529043629|ref|YP_008369848.1|	-	0.0015	18.3	0.0	1.4	8.6	0.0	2.1	1	1	1	2	2	2	2	Flavodoxin	domain
Flavodoxin_2	PF02525.17	gi|529043629|ref|YP_008369848.1|	-	0.017	14.8	0.0	0.02	14.6	0.0	1.2	1	0	0	1	1	1	0	Flavodoxin-like	fold
Mrr_cat	PF04471.12	gi|529043630|ref|YP_008369849.1|	-	2e-28	98.7	0.0	3.4e-28	98.0	0.0	1.4	1	0	0	1	1	1	1	Restriction	endonuclease
Mrr_cat_2	PF13156.6	gi|529043630|ref|YP_008369849.1|	-	0.0085	16.0	0.0	0.017	15.0	0.0	1.4	1	0	0	1	1	1	1	Restriction	endonuclease
zf-RING_5	PF14634.6	gi|529043630|ref|YP_008369849.1|	-	1.4	9.0	7.9	17	5.5	6.9	2.4	2	0	0	2	2	2	0	zinc-RING	finger	domain
DUF2318	PF10080.9	gi|529043632|ref|YP_008369851.1|	-	0.0059	16.7	0.1	0.0072	16.4	0.1	1.2	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2318)
RPA_interact_C	PF14768.6	gi|529043632|ref|YP_008369851.1|	-	0.0099	16.4	0.4	0.013	16.1	0.4	1.2	1	0	0	1	1	1	1	Replication	protein	A	interacting	C-terminal
zinc_ribbon_2	PF13240.6	gi|529043632|ref|YP_008369851.1|	-	0.02	14.6	1.7	4.1	7.3	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.7	gi|529043632|ref|YP_008369851.1|	-	0.023	14.7	0.7	0.04	13.9	0.7	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
Nudix_N_2	PF14803.6	gi|529043632|ref|YP_008369851.1|	-	0.031	14.2	2.8	3.6	7.6	0.1	2.7	3	0	0	3	3	3	0	Nudix	N-terminal
C1_1	PF00130.22	gi|529043632|ref|YP_008369851.1|	-	0.08	12.8	0.9	0.12	12.3	0.9	1.3	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DpnI	PF06044.12	gi|529043632|ref|YP_008369851.1|	-	0.092	12.4	0.4	0.11	12.1	0.4	1.2	1	0	0	1	1	1	0	Dam-replacing	family
GFA	PF04828.14	gi|529043632|ref|YP_008369851.1|	-	0.1	12.9	1.5	2.4	8.5	0.2	2.2	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
Zn-ribbon_8	PF09723.10	gi|529043632|ref|YP_008369851.1|	-	0.12	12.5	0.8	17	5.6	0.4	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|529043632|ref|YP_008369851.1|	-	0.71	9.9	4.5	1.7	8.7	0.5	2.4	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf_C2HC_14	PF18574.1	gi|529043632|ref|YP_008369851.1|	-	0.77	9.6	2.9	0.82	9.5	0.3	2.0	2	0	0	2	2	2	0	C2HC	Zing	finger	domain
Zn-ribbon_8	PF09723.10	gi|529043633|ref|YP_008369852.1|	-	0.021	14.9	1.0	4.9	7.4	0.1	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|529043633|ref|YP_008369852.1|	-	0.023	14.6	0.1	0.033	14.1	0.1	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
A2L_zn_ribbon	PF08792.10	gi|529043633|ref|YP_008369852.1|	-	0.051	13.3	1.0	1.5	8.7	0.1	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Zn_ribbon_SprT	PF17283.2	gi|529043633|ref|YP_008369852.1|	-	0.057	13.3	2.4	0.25	11.3	0.1	2.1	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
RNA_POL_M_15KD	PF02150.16	gi|529043633|ref|YP_008369852.1|	-	0.097	12.6	0.2	0.097	12.6	0.2	2.1	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf_C2H2_10	PF18414.1	gi|529043633|ref|YP_008369852.1|	-	0.1	12.1	6.2	0.83	9.2	0.3	2.2	2	0	0	2	2	2	0	C2H2	type	zinc-finger
zinc_ribbon_13	PF09855.9	gi|529043633|ref|YP_008369852.1|	-	0.12	12.6	0.0	0.33	11.2	0.0	1.7	1	1	0	1	1	1	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
zf-Mss51	PF13824.6	gi|529043633|ref|YP_008369852.1|	-	0.46	10.6	3.3	1.7	8.8	3.3	2.0	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DUF3797	PF12677.7	gi|529043633|ref|YP_008369852.1|	-	1.3	9.0	7.5	1.1	9.3	1.3	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
UPF0547	PF10571.9	gi|529043633|ref|YP_008369852.1|	-	7.8	6.7	9.8	2.3	8.4	0.8	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
ABC_tran	PF00005.27	gi|529043636|ref|YP_008369855.1|	-	4.8e-27	95.1	0.0	6.7e-27	94.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529043636|ref|YP_008369855.1|	-	3.5e-13	50.0	0.2	7.1e-09	35.9	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|529043636|ref|YP_008369855.1|	-	0.00026	21.6	0.0	0.00036	21.1	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|529043636|ref|YP_008369855.1|	-	0.0078	15.9	0.1	0.015	15.0	0.1	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|529043636|ref|YP_008369855.1|	-	0.0082	15.9	0.0	2.5	7.7	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
Mg_chelatase	PF01078.21	gi|529043636|ref|YP_008369855.1|	-	0.012	15.0	0.0	0.02	14.3	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_29	PF13555.6	gi|529043636|ref|YP_008369855.1|	-	0.025	14.3	0.2	0.045	13.5	0.2	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|529043636|ref|YP_008369855.1|	-	0.041	14.3	0.0	0.067	13.6	0.0	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
HepII_C	PF18675.1	gi|529043636|ref|YP_008369855.1|	-	0.041	14.0	0.1	1.6	8.9	0.0	2.9	2	1	1	3	3	3	0	Heparinase	II	C-terminal	domain
AAA_27	PF13514.6	gi|529043636|ref|YP_008369855.1|	-	0.072	12.7	0.0	0.12	11.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|529043636|ref|YP_008369855.1|	-	0.087	12.4	0.1	0.16	11.5	0.1	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_22	PF13401.6	gi|529043636|ref|YP_008369855.1|	-	0.15	12.4	0.0	0.34	11.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
DUF4271	PF14093.6	gi|529043638|ref|YP_008369857.1|	-	0.006	16.5	2.6	0.0063	16.4	2.6	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4271)
Jagunal	PF07086.12	gi|529043638|ref|YP_008369857.1|	-	0.09	12.8	0.6	0.11	12.5	0.6	1.4	1	1	0	1	1	1	0	Jagunal,	ER	re-organisation	during	oogenesis
SCAMP	PF04144.13	gi|529043638|ref|YP_008369857.1|	-	0.1	12.9	2.3	0.11	12.8	2.3	1.1	1	0	0	1	1	1	0	SCAMP	family
E1-E2_ATPase	PF00122.20	gi|529043638|ref|YP_008369857.1|	-	0.15	11.5	1.5	0.22	11.0	1.5	1.3	1	0	0	1	1	1	0	E1-E2	ATPase
DUF1772	PF08592.11	gi|529043638|ref|YP_008369857.1|	-	0.77	10.1	3.1	0.59	10.5	1.8	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1772)
SPC12	PF06645.13	gi|529043638|ref|YP_008369857.1|	-	2	8.6	7.5	6.5	6.9	1.2	2.5	1	1	1	2	2	2	0	Microsomal	signal	peptidase	12	kDa	subunit	(SPC12)
HTH_20	PF12840.7	gi|529043639|ref|YP_008369858.1|	-	3.2e-10	39.9	0.8	4.9e-10	39.3	0.8	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|529043639|ref|YP_008369858.1|	-	1.3e-06	27.8	0.1	2.8e-06	26.8	0.1	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|529043639|ref|YP_008369858.1|	-	4.8e-06	26.4	0.2	1.5e-05	24.8	0.2	1.7	1	1	1	2	2	2	1	MarR	family
HTH_IclR	PF09339.10	gi|529043639|ref|YP_008369858.1|	-	6e-06	26.0	0.0	1e-05	25.3	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|529043639|ref|YP_008369858.1|	-	3.5e-05	23.7	0.1	6.3e-05	22.8	0.1	1.4	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.19	gi|529043639|ref|YP_008369858.1|	-	6.2e-05	22.8	0.0	9e-05	22.3	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_AsnC-type	PF13404.6	gi|529043639|ref|YP_008369858.1|	-	0.00091	19.0	0.6	0.0023	17.7	0.6	1.7	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
RP-C	PF03428.13	gi|529043639|ref|YP_008369858.1|	-	0.001	18.8	0.0	0.0012	18.5	0.0	1.3	1	0	0	1	1	1	1	Replication	protein	C	N-terminal	domain
HTH_Tnp_ISL3	PF13542.6	gi|529043639|ref|YP_008369858.1|	-	0.0018	17.6	0.1	0.0039	16.6	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_23	PF13384.6	gi|529043639|ref|YP_008369858.1|	-	0.0026	17.5	0.1	0.0051	16.6	0.1	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
Sigma70_r4_2	PF08281.12	gi|529043639|ref|YP_008369858.1|	-	0.0064	16.2	0.2	0.01	15.5	0.2	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
MarR	PF01047.22	gi|529043639|ref|YP_008369858.1|	-	0.013	15.4	0.0	0.022	14.7	0.0	1.4	1	0	0	1	1	1	0	MarR	family
FUR	PF01475.19	gi|529043639|ref|YP_008369858.1|	-	0.02	15.0	0.0	0.022	14.9	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
PadR	PF03551.14	gi|529043639|ref|YP_008369858.1|	-	0.039	13.9	0.0	0.072	13.1	0.0	1.7	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Sigma70_r4	PF04545.16	gi|529043639|ref|YP_008369858.1|	-	0.077	12.5	0.0	0.14	11.7	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_27	PF13463.6	gi|529043639|ref|YP_008369858.1|	-	0.09	13.3	0.1	0.15	12.6	0.1	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_7	PF02796.15	gi|529043639|ref|YP_008369858.1|	-	0.1	12.7	0.0	0.29	11.2	0.0	1.8	1	1	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
Acyl_transf_3	PF01757.22	gi|529043640|ref|YP_008369859.1|	-	0.093	11.8	9.1	0.11	11.5	9.1	1.0	1	0	0	1	1	1	0	Acyltransferase	family
zinc_ribbon_2	PF13240.6	gi|529043641|ref|YP_008369860.1|	-	0.0084	15.8	1.3	3.8	7.3	0.1	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
DZR	PF12773.7	gi|529043641|ref|YP_008369860.1|	-	0.017	15.2	0.9	0.026	14.6	0.9	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
Nudix_N_2	PF14803.6	gi|529043641|ref|YP_008369860.1|	-	0.017	15.0	3.3	2.1	8.4	0.1	2.7	3	0	0	3	3	3	0	Nudix	N-terminal
RPA_interact_C	PF14768.6	gi|529043641|ref|YP_008369860.1|	-	0.019	15.5	0.3	0.025	15.1	0.3	1.3	1	0	0	1	1	1	0	Replication	protein	A	interacting	C-terminal
DUF2318	PF10080.9	gi|529043641|ref|YP_008369860.1|	-	0.023	14.8	0.1	0.028	14.5	0.1	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
DpnI	PF06044.12	gi|529043641|ref|YP_008369860.1|	-	0.044	13.4	0.4	0.062	12.9	0.4	1.2	1	0	0	1	1	1	0	Dam-replacing	family
GFA	PF04828.14	gi|529043641|ref|YP_008369860.1|	-	0.063	13.6	1.5	1.2	9.5	0.2	2.2	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
DNA_ligase_ZBD	PF03119.16	gi|529043641|ref|YP_008369860.1|	-	0.22	11.6	4.2	0.74	9.9	0.4	2.5	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-RRN7	PF11781.8	gi|529043641|ref|YP_008369860.1|	-	1.6	8.5	5.2	2.7	7.8	0.8	2.4	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Cytochrom_C_2	PF01322.20	gi|529043642|ref|YP_008369861.1|	-	0.11	13.4	0.2	0.14	13.1	0.2	1.2	1	0	0	1	1	1	0	Cytochrome	C'
OrfB_IS605	PF01385.19	gi|529043643|ref|YP_008369862.1|	-	2.6e-29	101.9	0.0	4.6e-29	101.1	0.0	1.3	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|529043643|ref|YP_008369862.1|	-	5.9e-19	67.8	0.3	1.1e-18	66.9	0.3	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Sigma70_r1_1	PF03979.14	gi|529043643|ref|YP_008369862.1|	-	0.19	11.8	0.1	0.76	9.9	0.0	2.0	3	0	0	3	3	3	0	Sigma-70	factor,	region	1.1
RNase_II_C_S1	PF18614.1	gi|529043645|ref|YP_008369864.1|	-	0.056	13.4	0.1	0.078	12.9	0.1	1.2	1	0	0	1	1	1	0	RNase	II-type	exonuclease	C-terminal	S1	domain
HEPN_Apea	PF18739.1	gi|529043649|ref|YP_008369868.1|	-	1.6e-06	28.5	0.1	3.9e-06	27.2	0.1	1.6	1	0	0	1	1	1	1	Apea-like	HEPN
OrfB_Zn_ribbon	PF07282.11	gi|529043650|ref|YP_008369869.1|	-	3.2e-19	68.6	0.1	7.9e-19	67.4	0.1	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|529043650|ref|YP_008369869.1|	-	0.0011	19.1	1.8	0.0011	19.1	1.8	2.4	2	1	0	2	2	2	1	Probable	transposase
DZR	PF12773.7	gi|529043650|ref|YP_008369869.1|	-	0.0097	15.9	1.5	0.023	14.7	1.5	1.5	1	0	0	1	1	1	1	Double	zinc	ribbon
Lar_restr_allev	PF14354.6	gi|529043650|ref|YP_008369869.1|	-	0.083	13.3	1.5	0.2	12.0	1.5	1.6	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
DUF1610	PF07754.11	gi|529043650|ref|YP_008369869.1|	-	0.11	12.5	2.5	11	6.1	0.1	2.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
Cys_rich_KTR	PF14205.6	gi|529043650|ref|YP_008369869.1|	-	0.16	11.8	1.8	0.41	10.5	1.8	1.6	1	0	0	1	1	1	0	Cysteine-rich	KTR
zf-NADH-PPase	PF09297.11	gi|529043650|ref|YP_008369869.1|	-	0.2	11.4	0.1	0.2	11.4	0.1	2.7	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
EzrA	PF06160.12	gi|529043650|ref|YP_008369869.1|	-	0.21	9.7	0.4	0.32	9.1	0.4	1.1	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
N36	PF11438.8	gi|529043650|ref|YP_008369869.1|	-	0.54	10.1	2.6	1.4	8.8	2.6	1.7	1	0	0	1	1	1	0	36-mer	N-terminal	peptide	of	the	N	protein	(N36)
zinc_ribbon_2	PF13240.6	gi|529043650|ref|YP_008369869.1|	-	3.2	7.6	5.7	3.7	7.4	0.6	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|529043650|ref|YP_008369869.1|	-	4.1	7.5	10.9	0.74	9.8	5.1	2.8	2	1	0	2	2	2	0	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|529043652|ref|YP_008369871.1|	-	0.034	13.9	2.5	0.034	13.9	2.5	2.5	3	0	0	3	3	3	0	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|529043652|ref|YP_008369871.1|	-	0.72	10.6	6.6	6.9	7.5	0.5	2.8	2	1	1	3	3	3	0	zinc-ribbon	family
Zf_RING	PF16744.5	gi|529043652|ref|YP_008369871.1|	-	1.4	9.1	5.2	13	6.0	0.1	3.4	4	0	0	4	4	4	0	KIAA1045	RING	finger
RNA_POL_M_15KD	PF02150.16	gi|529043652|ref|YP_008369871.1|	-	2.4	8.1	9.4	12	5.9	0.2	3.6	3	1	0	3	3	3	0	RNA	polymerases	M/15	Kd	subunit
DZR	PF12773.7	gi|529043652|ref|YP_008369871.1|	-	3.5	7.7	9.2	2	8.5	1.2	2.6	2	1	0	2	2	2	0	Double	zinc	ribbon
TFIIB	PF00382.19	gi|529043653|ref|YP_008369872.1|	-	1.3e-29	102.0	2.3	9.7e-16	57.6	0.4	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|529043653|ref|YP_008369872.1|	-	3.6e-12	45.6	2.3	6.2e-12	44.8	2.3	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
RB_B	PF01857.20	gi|529043653|ref|YP_008369872.1|	-	0.019	15.0	0.0	0.03	14.3	0.0	1.3	1	0	0	1	1	1	0	Retinoblastoma-associated	protein	B	domain
UPF0547	PF10571.9	gi|529043653|ref|YP_008369872.1|	-	0.019	15.0	1.9	0.05	13.7	1.9	1.7	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
DZR	PF12773.7	gi|529043653|ref|YP_008369872.1|	-	0.033	14.2	1.9	0.073	13.1	1.2	1.8	2	0	0	2	2	2	0	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.11	gi|529043653|ref|YP_008369872.1|	-	0.05	13.5	1.5	0.29	11.1	1.3	2.3	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
PHF5	PF03660.14	gi|529043653|ref|YP_008369872.1|	-	0.085	13.1	0.8	0.16	12.2	0.8	1.5	1	0	0	1	1	1	0	PHF5-like	protein
Zn-ribbon_8	PF09723.10	gi|529043653|ref|YP_008369872.1|	-	2.2	8.5	5.6	17	5.6	0.6	2.7	1	1	0	2	2	2	0	Zinc	ribbon	domain
DNA_methylase	PF00145.17	gi|529043654|ref|YP_008369873.1|	-	3.6e-54	184.4	0.0	4.8e-54	184.0	0.0	1.1	1	0	0	1	1	1	1	C-5	cytosine-specific	DNA	methylase
Methyltransf_25	PF13649.6	gi|529043654|ref|YP_008369873.1|	-	0.00018	22.2	0.1	0.00044	20.9	0.1	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.10	gi|529043654|ref|YP_008369873.1|	-	0.00027	20.6	0.0	0.00047	19.8	0.0	1.4	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_31	PF13847.6	gi|529043654|ref|YP_008369873.1|	-	0.18	11.6	0.2	0.31	10.8	0.2	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
TehB	PF03848.14	gi|529043654|ref|YP_008369873.1|	-	0.2	11.1	0.0	0.3	10.5	0.0	1.2	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
Helicase_C	PF00271.31	gi|529043656|ref|YP_008369875.1|	-	2.6e-07	31.0	0.0	7.7e-07	29.4	0.0	1.8	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|529043656|ref|YP_008369875.1|	-	6.7e-05	22.7	0.0	0.32	10.8	0.0	2.3	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
Sod_Fe_C	PF02777.18	gi|529043656|ref|YP_008369875.1|	-	0.076	13.2	0.0	0.15	12.3	0.0	1.4	1	0	0	1	1	1	0	Iron/manganese	superoxide	dismutases,	C-terminal	domain
Lectin_N	PF03954.14	gi|529043656|ref|YP_008369875.1|	-	0.24	11.2	0.0	0.46	10.2	0.0	1.4	1	0	0	1	1	1	0	Hepatic	lectin,	N-terminal	domain
AIP3	PF03915.13	gi|529043657|ref|YP_008369876.1|	-	0.068	12.3	0.2	0.14	11.2	0.2	1.4	1	0	0	1	1	1	0	Actin	interacting	protein	3
Ribosomal_L32p	PF01783.23	gi|529043658|ref|YP_008369877.1|	-	0.043	14.1	0.0	0.051	13.8	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	L32p	protein	family
ISG65-75	PF11727.8	gi|529043658|ref|YP_008369877.1|	-	0.086	12.1	0.0	0.092	12.0	0.0	1.0	1	0	0	1	1	1	0	Invariant	surface	glycoprotein
tRNA_anti-codon	PF01336.25	gi|529043661|ref|YP_008369880.1|	-	0.0044	17.0	0.1	0.0095	15.9	0.1	1.6	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA_anti_2	PF13742.6	gi|529043661|ref|YP_008369880.1|	-	0.044	14.0	0.0	0.097	12.9	0.0	1.5	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
HalOD1	PF18545.1	gi|529043662|ref|YP_008369881.1|	-	1.1e-06	28.8	0.5	1.4e-06	28.5	0.5	1.3	1	0	0	1	1	1	1	Halobacterial	output	domain	1
DUF2250	PF10007.9	gi|529043663|ref|YP_008369882.1|	-	0.00025	21.1	0.0	0.0026	17.8	0.0	1.9	1	1	1	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Mrr_N	PF14338.6	gi|529043663|ref|YP_008369882.1|	-	0.0035	17.4	0.0	0.0045	17.1	0.0	1.3	1	0	0	1	1	1	1	Mrr	N-terminal	domain
HTH_AsnC-type	PF13404.6	gi|529043663|ref|YP_008369882.1|	-	0.0087	15.9	0.1	0.012	15.5	0.1	1.2	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|529043663|ref|YP_008369882.1|	-	0.018	14.6	0.0	0.084	12.5	0.0	1.9	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|529043663|ref|YP_008369882.1|	-	0.023	14.5	0.0	0.027	14.4	0.0	1.2	1	0	0	1	1	1	0	MarR	family
DUF4423	PF14394.6	gi|529043663|ref|YP_008369882.1|	-	0.14	11.9	0.0	0.16	11.7	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
TrmB	PF01978.19	gi|529043665|ref|YP_008369884.1|	-	3.9e-10	39.5	0.2	8.9e-10	38.3	0.2	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|529043665|ref|YP_008369884.1|	-	8.8e-08	31.6	0.0	1.2e-06	28.0	0.0	2.5	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|529043665|ref|YP_008369884.1|	-	3.8e-07	30.0	0.3	1e-06	28.7	0.3	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|529043665|ref|YP_008369884.1|	-	1.4e-05	24.9	0.0	8e-05	22.4	0.0	2.1	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|529043665|ref|YP_008369884.1|	-	5.2e-05	23.1	0.2	0.00013	21.7	0.2	1.8	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|529043665|ref|YP_008369884.1|	-	0.00012	21.8	0.2	0.00035	20.3	0.1	1.9	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_27	PF13463.6	gi|529043665|ref|YP_008369884.1|	-	0.0048	17.4	0.1	0.0098	16.4	0.1	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|529043665|ref|YP_008369884.1|	-	0.011	15.6	0.0	0.024	14.6	0.0	1.6	1	0	0	1	1	1	0	MarR	family
HTH_DeoR	PF08220.12	gi|529043665|ref|YP_008369884.1|	-	0.017	14.9	0.0	0.049	13.4	0.0	1.8	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
PadR	PF03551.14	gi|529043665|ref|YP_008369884.1|	-	0.053	13.5	0.0	0.14	12.1	0.0	1.8	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_29	PF13551.6	gi|529043665|ref|YP_008369884.1|	-	0.061	13.4	0.0	0.15	12.1	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_39	PF14090.6	gi|529043665|ref|YP_008369884.1|	-	0.072	12.9	0.2	8.7	6.2	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|529043665|ref|YP_008369884.1|	-	0.082	12.9	0.0	0.79	9.7	0.0	2.2	2	0	0	2	2	2	0	HTH	domain
HTH_34	PF13601.6	gi|529043665|ref|YP_008369884.1|	-	0.1	12.8	0.0	0.17	12.1	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
F-112	PF09645.10	gi|529043665|ref|YP_008369884.1|	-	0.11	12.6	0.0	17	5.5	0.0	2.2	2	0	0	2	2	2	0	F-112	protein
Penicillinase_R	PF03965.16	gi|529043665|ref|YP_008369884.1|	-	0.16	12.3	0.0	0.29	11.5	0.0	1.5	1	0	0	1	1	1	0	Penicillinase	repressor
OrfB_Zn_ribbon	PF07282.11	gi|529043666|ref|YP_008369885.1|	-	0.0041	17.0	0.2	0.0072	16.2	0.2	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Lactamase_B	PF00753.27	gi|529043668|ref|YP_008369887.1|	-	1e-07	32.2	4.7	1e-07	32.2	4.7	2.3	2	0	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|529043668|ref|YP_008369887.1|	-	3.5e-07	29.9	2.3	3.5e-07	29.9	2.3	2.0	3	0	0	3	3	3	1	Beta-lactamase	superfamily	domain
Phage_tail_U	PF06141.11	gi|529043669|ref|YP_008369888.1|	-	0.045	14.1	0.1	0.05	14.0	0.1	1.1	1	0	0	1	1	1	0	Phage	minor	tail	protein	U
Parvo_coat_N	PF08398.10	gi|529043669|ref|YP_008369888.1|	-	0.092	12.9	0.1	0.23	11.6	0.0	1.7	1	1	0	1	1	1	0	Parvovirus	coat	protein	VP1
ATG16	PF08614.11	gi|529043670|ref|YP_008369889.1|	-	0.0037	17.5	2.7	0.0037	17.5	2.7	2.0	2	0	0	2	2	2	1	Autophagy	protein	16	(ATG16)
SlyX	PF04102.12	gi|529043670|ref|YP_008369889.1|	-	0.0045	17.6	1.5	0.032	14.8	0.4	2.5	3	0	0	3	3	3	1	SlyX
HAP1_N	PF04849.13	gi|529043670|ref|YP_008369889.1|	-	0.0046	16.2	0.2	0.0072	15.6	0.2	1.2	1	0	0	1	1	1	1	HAP1	N-terminal	conserved	region
ZapB	PF06005.12	gi|529043670|ref|YP_008369889.1|	-	0.012	16.1	1.7	0.023	15.1	1.7	1.4	1	0	0	1	1	1	0	Cell	division	protein	ZapB
DivIC	PF04977.15	gi|529043670|ref|YP_008369889.1|	-	0.052	13.3	1.0	0.052	13.3	1.0	1.8	2	0	0	2	2	2	0	Septum	formation	initiator
Prefoldin	PF02996.17	gi|529043670|ref|YP_008369889.1|	-	0.5	10.3	3.0	0.48	10.3	1.6	1.7	2	0	0	2	2	2	0	Prefoldin	subunit
DS	PF01916.17	gi|529043675|ref|YP_008369894.1|	-	4.1e-99	331.5	0.0	4.7e-99	331.3	0.0	1.0	1	0	0	1	1	1	1	Deoxyhypusine	synthase
E1-E2_ATPase	PF00122.20	gi|529043676|ref|YP_008369895.1|	-	3.7e-42	143.9	0.2	3.7e-42	143.9	0.2	2.3	3	0	0	3	3	3	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|529043676|ref|YP_008369895.1|	-	1.9e-31	110.0	3.0	3.8e-31	109.0	3.0	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|529043676|ref|YP_008369895.1|	-	5.1e-09	36.5	0.0	4e-08	33.6	0.0	2.4	2	0	0	2	2	2	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|529043676|ref|YP_008369895.1|	-	2.2e-05	24.3	0.1	3.6e-05	23.6	0.1	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
ATPase-cat_bd	PF12156.8	gi|529043676|ref|YP_008369895.1|	-	0.12	13.1	2.1	0.15	12.8	0.4	1.9	1	1	0	2	2	2	0	Putative	metal-binding	domain	of	cation	transport	ATPase
DsbD_2	PF13386.6	gi|529043677|ref|YP_008369896.1|	-	1.2e-32	113.5	18.2	1.5e-32	113.1	18.2	1.1	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
Chlorosome_CsmC	PF11098.8	gi|529043677|ref|YP_008369896.1|	-	0.12	12.4	4.8	0.46	10.5	0.2	2.3	1	1	1	2	2	2	0	Chlorosome	envelope	protein	C
PIRT	PF15099.6	gi|529043677|ref|YP_008369896.1|	-	7.6	6.1	6.9	0.49	10.0	1.6	1.7	2	0	0	2	2	2	0	Phosphoinositide-interacting	protein	family
TrkA_N	PF02254.18	gi|529043678|ref|YP_008369897.1|	-	7.7e-28	97.1	3.7	6e-25	87.8	2.4	2.5	2	0	0	2	2	2	2	TrkA-N	domain
TrkA_C	PF02080.21	gi|529043678|ref|YP_008369897.1|	-	1e-14	54.1	0.8	1.9e-12	46.8	0.1	2.6	2	0	0	2	2	2	1	TrkA-C	domain
NAD_binding_7	PF13241.6	gi|529043678|ref|YP_008369897.1|	-	2.6e-09	37.4	3.0	1.5e-08	35.0	1.3	2.4	2	1	0	2	2	2	1	Putative	NAD(P)-binding
Shikimate_DH	PF01488.20	gi|529043678|ref|YP_008369897.1|	-	5.2e-07	29.8	0.8	3.3e-06	27.2	0.4	2.2	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
NAD_Gly3P_dh_N	PF01210.23	gi|529043678|ref|YP_008369897.1|	-	9.1e-05	22.5	0.2	0.00074	19.5	0.1	2.4	2	1	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Pyr_redox_2	PF07992.14	gi|529043678|ref|YP_008369897.1|	-	0.00013	21.3	0.5	0.0063	15.8	0.1	2.4	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Sacchrp_dh_NADP	PF03435.18	gi|529043678|ref|YP_008369897.1|	-	0.00016	21.9	2.0	0.00034	20.9	0.8	2.0	2	0	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
F420_oxidored	PF03807.17	gi|529043678|ref|YP_008369897.1|	-	0.00018	22.0	1.4	0.00096	19.7	0.4	2.2	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
Pyr_redox	PF00070.27	gi|529043678|ref|YP_008369897.1|	-	0.00031	21.2	0.2	0.071	13.7	0.2	2.7	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.16	gi|529043678|ref|YP_008369897.1|	-	0.00046	19.9	0.3	0.00089	18.9	0.3	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
3HCDH_N	PF02737.18	gi|529043678|ref|YP_008369897.1|	-	0.0011	18.9	0.2	0.022	14.6	0.2	2.2	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
XdhC_C	PF13478.6	gi|529043678|ref|YP_008369897.1|	-	0.0013	19.2	0.7	0.42	11.1	0.5	3.1	3	1	0	4	4	4	1	XdhC	Rossmann	domain
UDPG_MGDP_dh_N	PF03721.14	gi|529043678|ref|YP_008369897.1|	-	0.0014	18.2	2.7	0.0063	16.1	0.2	2.8	2	2	1	3	3	3	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_10	PF13460.6	gi|529043678|ref|YP_008369897.1|	-	0.0026	17.7	1.4	0.0055	16.6	1.4	1.5	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_binding_2	PF03446.15	gi|529043678|ref|YP_008369897.1|	-	0.0033	17.6	0.5	0.031	14.5	0.1	2.1	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
FAD_binding_3	PF01494.19	gi|529043678|ref|YP_008369897.1|	-	0.0057	15.9	0.0	2.4	7.3	0.1	2.2	2	0	0	2	2	2	2	FAD	binding	domain
OCD_Mu_crystall	PF02423.15	gi|529043678|ref|YP_008369897.1|	-	0.0074	15.3	1.7	0.011	14.6	1.7	1.2	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
AlaDh_PNT_C	PF01262.21	gi|529043678|ref|YP_008369897.1|	-	0.021	14.1	2.1	0.021	14.1	0.8	1.6	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
IlvN	PF07991.12	gi|529043678|ref|YP_008369897.1|	-	0.026	14.1	1.1	0.039	13.5	0.3	1.7	2	0	0	2	2	2	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
2-Hacid_dh_C	PF02826.19	gi|529043678|ref|YP_008369897.1|	-	0.03	13.7	0.0	0.24	10.7	0.0	2.1	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
HEM4	PF02602.15	gi|529043678|ref|YP_008369897.1|	-	0.065	12.6	0.2	0.24	10.7	0.1	1.9	2	1	0	2	2	2	0	Uroporphyrinogen-III	synthase	HemD
DAO	PF01266.24	gi|529043678|ref|YP_008369897.1|	-	0.078	12.5	1.9	0.079	12.5	1.4	1.6	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|529043678|ref|YP_008369897.1|	-	0.13	12.5	0.1	0.56	10.5	0.1	2.0	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
ThiF	PF00899.21	gi|529043678|ref|YP_008369897.1|	-	0.17	11.2	1.7	4.7	6.5	0.1	2.3	1	1	1	2	2	2	0	ThiF	family
DDE_Tnp_IS1595	PF12762.7	gi|529043679|ref|YP_008369898.1|	-	1.1e-20	74.2	0.0	1.5e-20	73.8	0.0	1.2	1	0	0	1	1	1	1	ISXO2-like	transposase	domain
Zn_Tnp_IS1595	PF12760.7	gi|529043679|ref|YP_008369898.1|	-	3.4e-10	39.7	1.3	6.7e-10	38.8	1.3	1.5	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
DUF2089	PF09862.9	gi|529043679|ref|YP_008369898.1|	-	6.2e-08	32.7	0.0	1.1e-07	31.8	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2089)
Zn_Tnp_IS1	PF03811.13	gi|529043679|ref|YP_008369898.1|	-	5.9e-06	25.9	3.8	1.5e-05	24.6	3.8	1.7	1	0	0	1	1	1	1	InsA	N-terminal	domain
HTH_23	PF13384.6	gi|529043679|ref|YP_008369898.1|	-	0.0053	16.5	0.0	0.017	14.9	0.0	1.9	1	0	0	1	1	1	1	Homeodomain-like	domain
Zn-ribbon_8	PF09723.10	gi|529043679|ref|YP_008369898.1|	-	0.0083	16.2	0.6	3.5	7.8	0.1	2.5	2	0	0	2	2	2	1	Zinc	ribbon	domain
Sigma70_r4_2	PF08281.12	gi|529043679|ref|YP_008369898.1|	-	0.012	15.3	0.0	0.21	11.3	0.0	2.4	2	0	0	2	2	2	0	Sigma-70,	region	4
TackOD1	PF18551.1	gi|529043679|ref|YP_008369898.1|	-	0.013	15.1	0.2	0.022	14.4	0.2	1.2	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
HTH_30	PF13556.6	gi|529043679|ref|YP_008369898.1|	-	0.02	14.7	0.1	0.05	13.4	0.1	1.6	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
zf-C4_Topoisom	PF01396.19	gi|529043679|ref|YP_008369898.1|	-	0.03	14.1	0.9	0.06	13.1	0.9	1.6	1	1	0	1	1	1	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-Dof	PF02701.15	gi|529043679|ref|YP_008369898.1|	-	0.041	14.0	2.6	0.082	13.1	2.6	1.5	1	0	0	1	1	1	0	Dof	domain,	zinc	finger
ADK_lid	PF05191.14	gi|529043679|ref|YP_008369898.1|	-	0.043	13.8	0.1	0.043	13.8	0.1	2.1	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
HTH_29	PF13551.6	gi|529043679|ref|YP_008369898.1|	-	0.083	12.9	0.5	0.28	11.2	0.1	2.0	2	0	0	2	2	2	0	Winged	helix-turn	helix
zinc-ribbons_6	PF07191.12	gi|529043679|ref|YP_008369898.1|	-	0.11	12.5	0.2	0.22	11.5	0.2	1.5	1	0	0	1	1	1	0	zinc-ribbons
Zn_ribbon_recom	PF13408.6	gi|529043679|ref|YP_008369898.1|	-	0.15	12.6	2.5	0.49	11.0	2.5	1.8	1	0	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|529043679|ref|YP_008369898.1|	-	0.17	11.5	1.5	0.47	10.0	1.5	1.8	1	1	0	1	1	1	0	TFIIB	zinc-binding
HTH_28	PF13518.6	gi|529043679|ref|YP_008369898.1|	-	0.2	11.8	0.2	0.2	11.8	0.2	2.3	3	0	0	3	3	2	0	Helix-turn-helix	domain
zf-C2H2_4	PF13894.6	gi|529043679|ref|YP_008369898.1|	-	0.33	11.9	1.4	1.3	10.0	0.2	2.4	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-ISL3	PF14690.6	gi|529043679|ref|YP_008369898.1|	-	0.95	10.2	5.5	9.6	7.0	0.2	2.8	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-C2HC_2	PF13913.6	gi|529043679|ref|YP_008369898.1|	-	4.3	7.3	8.0	0.22	11.5	1.4	2.2	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
DDE_Tnp_1	PF01609.21	gi|529043681|ref|YP_008369900.1|	-	1.6e-12	47.6	1.3	3e-12	46.6	1.3	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.6	gi|529043681|ref|YP_008369900.1|	-	0.022	15.1	1.2	0.051	13.9	0.1	2.0	2	1	0	2	2	2	0	Transposase	DDE	domain
DUF772	PF05598.11	gi|529043681|ref|YP_008369900.1|	-	0.038	14.0	0.6	0.075	13.1	0.1	1.8	2	0	0	2	2	2	0	Transposase	domain	(DUF772)
CbiA	PF01656.23	gi|529043682|ref|YP_008369901.1|	-	5.7e-13	49.0	0.0	5.9e-13	49.0	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|529043682|ref|YP_008369901.1|	-	3.3e-12	46.7	0.0	4e-12	46.4	0.0	1.0	1	0	0	1	1	1	1	AAA	domain
ParA	PF10609.9	gi|529043682|ref|YP_008369901.1|	-	1.6e-07	31.1	0.0	1.9e-07	30.8	0.0	1.1	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|529043682|ref|YP_008369901.1|	-	4.4e-05	22.9	0.0	5e-05	22.7	0.0	1.1	1	0	0	1	1	1	1	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|529043682|ref|YP_008369901.1|	-	0.00013	21.6	0.1	0.00015	21.3	0.1	1.2	1	1	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
CLP1_P	PF16575.5	gi|529043682|ref|YP_008369901.1|	-	0.00065	19.6	0.0	0.00091	19.1	0.0	1.2	1	0	0	1	1	1	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
ArsA_ATPase	PF02374.15	gi|529043682|ref|YP_008369901.1|	-	0.0016	17.7	0.0	0.0019	17.5	0.0	1.2	1	0	0	1	1	1	1	Anion-transporting	ATPase
ATP_bind_1	PF03029.17	gi|529043682|ref|YP_008369901.1|	-	0.0024	17.7	0.0	0.0042	16.9	0.0	1.3	1	0	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
Fer4_NifH	PF00142.18	gi|529043682|ref|YP_008369901.1|	-	0.0065	16.0	0.0	0.0065	16.0	0.0	1.2	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
SRP54	PF00448.22	gi|529043682|ref|YP_008369901.1|	-	0.0073	15.9	0.0	0.0099	15.5	0.0	1.1	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
IstB_IS21	PF01695.17	gi|529043682|ref|YP_008369901.1|	-	0.029	14.1	0.0	0.036	13.8	0.0	1.2	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_18	PF13238.6	gi|529043682|ref|YP_008369901.1|	-	0.034	14.7	0.0	0.038	14.5	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_14	PF13173.6	gi|529043682|ref|YP_008369901.1|	-	0.039	14.0	0.0	0.06	13.4	0.0	1.3	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|529043682|ref|YP_008369901.1|	-	0.039	13.7	0.0	0.041	13.6	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|529043682|ref|YP_008369901.1|	-	0.083	13.0	0.0	0.086	13.0	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|529043682|ref|YP_008369901.1|	-	0.096	12.7	0.0	0.1	12.6	0.0	1.1	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
KTI12	PF08433.10	gi|529043682|ref|YP_008369901.1|	-	0.19	11.1	0.0	0.24	10.8	0.0	1.1	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
DUF3464	PF11947.8	gi|529043685|ref|YP_008369904.1|	-	0.12	12.2	0.3	0.12	12.2	0.3	1.0	1	0	0	1	1	1	0	Photosynthesis	affected	mutant	68
12TM_1	PF09847.9	gi|529043690|ref|YP_008369909.1|	-	0.2	10.7	3.7	0.23	10.5	3.7	1.0	1	0	0	1	1	1	0	Membrane	protein	of	12	TMs
DDE_Tnp_1	PF01609.21	gi|529043693|ref|YP_008369912.1|	-	8.7e-23	81.1	0.0	1.2e-22	80.6	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.12	gi|529043693|ref|YP_008369912.1|	-	0.039	13.2	0.0	0.087	12.0	0.0	1.5	2	0	0	2	2	2	0	Archaeal	putative	transposase	ISC1217
DDE_Tnp_IS66	PF03050.14	gi|529043694|ref|YP_008369913.1|	-	4.2e-50	170.8	0.2	5.4e-50	170.4	0.2	1.1	1	0	0	1	1	1	1	Transposase	IS66	family
zf-IS66	PF13005.7	gi|529043694|ref|YP_008369913.1|	-	0.00012	22.4	0.8	0.00032	21.0	0.8	1.7	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
DDE_Tnp_IS240	PF13610.6	gi|529043694|ref|YP_008369913.1|	-	0.071	13.3	0.0	0.16	12.2	0.0	1.7	1	1	0	1	1	1	0	DDE	domain
DUF2249	PF10006.9	gi|529043695|ref|YP_008369914.1|	-	0.057	13.3	0.9	0.072	13.0	0.2	1.6	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2249)
ABC_tran	PF00005.27	gi|529043696|ref|YP_008369915.1|	-	1e-28	100.6	0.0	1.3e-28	100.2	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529043696|ref|YP_008369915.1|	-	2.9e-17	63.5	0.2	9.2e-12	45.4	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
BCA_ABC_TP_C	PF12399.8	gi|529043696|ref|YP_008369915.1|	-	0.0063	16.4	0.1	0.049	13.6	0.1	2.3	2	0	0	2	2	2	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_15	PF13175.6	gi|529043696|ref|YP_008369915.1|	-	0.0073	16.1	0.0	3.6	7.2	0.0	2.1	1	1	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.6	gi|529043696|ref|YP_008369915.1|	-	0.015	15.8	1.1	0.026	15.0	0.3	1.7	1	1	0	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|529043696|ref|YP_008369915.1|	-	0.023	14.4	0.0	0.045	13.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|529043696|ref|YP_008369915.1|	-	0.026	13.8	0.0	0.041	13.2	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA	PF00004.29	gi|529043696|ref|YP_008369915.1|	-	0.045	14.2	0.0	0.18	12.2	0.0	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|529043696|ref|YP_008369915.1|	-	0.087	13.2	0.0	0.13	12.7	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_13	PF13166.6	gi|529043696|ref|YP_008369915.1|	-	0.13	10.9	0.2	0.53	8.9	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
SRP54	PF00448.22	gi|529043696|ref|YP_008369915.1|	-	0.13	11.9	0.2	0.26	10.9	0.1	1.5	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
YjcB	PF15940.5	gi|529043697|ref|YP_008369916.1|	-	0.71	10.1	4.2	2.4	8.4	0.0	3.1	3	0	0	3	3	3	0	Family	of	unknown	function
DIM	PF08194.12	gi|529043698|ref|YP_008369917.1|	-	0.072	13.3	1.8	0.11	12.8	1.8	1.4	1	0	0	1	1	1	0	DIM	protein
DDE_Tnp_1	PF01609.21	gi|529043699|ref|YP_008369918.1|	-	8.2e-20	71.4	0.0	1.2e-19	70.8	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|529043699|ref|YP_008369918.1|	-	0.00048	20.1	0.1	0.0009	19.2	0.1	1.5	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
PDDEXK_1	PF12705.7	gi|529043700|ref|YP_008369919.1|	-	6.9e-14	52.4	0.0	1.9e-13	50.9	0.0	1.9	2	1	0	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
UvrD-helicase	PF00580.21	gi|529043701|ref|YP_008369920.1|	-	2.9e-50	171.6	0.7	2.1e-49	168.8	0.7	2.0	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C	PF13361.6	gi|529043701|ref|YP_008369920.1|	-	4.2e-31	108.6	0.0	1.7e-18	67.2	0.0	2.3	1	1	1	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_19	PF13245.6	gi|529043701|ref|YP_008369920.1|	-	1.9e-24	86.7	0.0	1.5e-23	83.8	0.0	2.4	1	1	0	1	1	1	1	AAA	domain
UvrD_C_2	PF13538.6	gi|529043701|ref|YP_008369920.1|	-	1.3e-09	37.7	0.1	0.00012	21.9	0.1	2.6	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
PDDEXK_1	PF12705.7	gi|529043701|ref|YP_008369920.1|	-	5.4e-09	36.3	5.3	1e-07	32.2	0.8	2.8	2	1	1	3	3	3	1	PD-(D/E)XK	nuclease	superfamily
AAA_30	PF13604.6	gi|529043701|ref|YP_008369920.1|	-	2.5e-06	27.3	0.0	1.4e-05	24.9	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
Viral_helicase1	PF01443.18	gi|529043701|ref|YP_008369920.1|	-	0.0017	18.1	0.2	9.1	5.9	0.0	3.4	3	0	0	3	3	3	2	Viral	(Superfamily	1)	RNA	helicase
AAA_12	PF13087.6	gi|529043701|ref|YP_008369920.1|	-	0.0023	17.6	0.0	0.025	14.2	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_11	PF13086.6	gi|529043701|ref|YP_008369920.1|	-	0.012	15.4	0.0	0.55	10.0	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
DUF2800	PF10926.8	gi|529043701|ref|YP_008369920.1|	-	0.033	13.5	0.0	0.064	12.5	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2800)
AAA_22	PF13401.6	gi|529043701|ref|YP_008369920.1|	-	0.1	12.9	0.1	0.47	10.7	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
Helicase_C	PF00271.31	gi|529043702|ref|YP_008369921.1|	-	4.2e-23	81.8	0.0	1e-22	80.5	0.0	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.23	gi|529043702|ref|YP_008369921.1|	-	2.1e-18	66.2	0.0	1.8e-16	59.8	0.0	2.4	1	1	0	1	1	1	1	SNF2	family	N-terminal	domain
ResIII	PF04851.15	gi|529043702|ref|YP_008369921.1|	-	1.9e-11	44.2	0.0	1e-10	41.9	0.0	2.3	2	1	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|529043702|ref|YP_008369921.1|	-	5.8e-06	26.2	0.0	1.5e-05	24.9	0.0	1.7	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
RapA_C	PF12137.8	gi|529043702|ref|YP_008369921.1|	-	0.00076	18.6	8.0	0.001	18.2	4.5	2.5	1	1	1	2	2	2	1	RNA	polymerase	recycling	family	C-terminal
Helicase_C_4	PF13871.6	gi|529043702|ref|YP_008369921.1|	-	0.0013	18.4	0.0	0.062	13.0	0.0	2.4	2	0	0	2	2	2	1	C-terminal	domain	on	Strawberry	notch	homologue
AAA_34	PF13872.6	gi|529043702|ref|YP_008369921.1|	-	0.0093	14.9	0.5	0.037	12.9	0.5	1.9	1	1	0	1	1	1	1	P-loop	containing	NTP	hydrolase	pore-1
KxDL	PF10241.9	gi|529043702|ref|YP_008369921.1|	-	0.043	14.1	2.0	1.1	9.6	1.7	2.8	2	0	0	2	2	2	0	Uncharacterized	conserved	protein
DUF2075	PF09848.9	gi|529043702|ref|YP_008369921.1|	-	0.085	12.1	2.9	0.11	11.7	0.0	2.7	4	0	0	4	4	4	0	Uncharacterized	conserved	protein	(DUF2075)
DUF16	PF01519.16	gi|529043702|ref|YP_008369921.1|	-	1.9	9.1	5.9	0.52	10.8	1.5	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF16
PglZ	PF08665.12	gi|529043704|ref|YP_008369923.1|	-	2.8e-09	37.3	0.0	5.3e-09	36.4	0.0	1.4	1	0	0	1	1	1	1	PglZ	domain
SMC_N	PF02463.19	gi|529043705|ref|YP_008369924.1|	-	7e-20	71.4	0.1	2.1e-19	69.8	0.1	1.7	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|529043705|ref|YP_008369924.1|	-	1.9e-18	67.7	0.1	1.9e-18	67.7	0.1	3.5	1	1	0	2	2	1	1	AAA	domain
AAA_15	PF13175.6	gi|529043705|ref|YP_008369924.1|	-	8e-18	65.3	0.2	7.6e-16	58.8	0.2	2.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_21	PF13304.6	gi|529043705|ref|YP_008369924.1|	-	1e-12	48.5	11.1	7.4e-07	29.3	4.6	2.9	2	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_13	PF13166.6	gi|529043705|ref|YP_008369924.1|	-	6.9e-10	38.2	6.7	2.5e-08	33.1	2.1	3.6	3	1	0	3	3	3	1	AAA	domain
AAA_29	PF13555.6	gi|529043705|ref|YP_008369924.1|	-	4.6e-07	29.5	0.0	1e-06	28.4	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_27	PF13514.6	gi|529043705|ref|YP_008369924.1|	-	0.00055	19.6	0.1	0.003	17.2	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
ABC_tran	PF00005.27	gi|529043705|ref|YP_008369924.1|	-	0.00062	20.3	0.9	0.0025	18.3	0.1	2.5	2	1	0	2	2	2	1	ABC	transporter
DUF2813	PF11398.8	gi|529043705|ref|YP_008369924.1|	-	0.00078	18.8	1.4	0.0011	18.3	0.0	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2813)
Dynamin_N	PF00350.23	gi|529043705|ref|YP_008369924.1|	-	0.017	15.2	1.1	0.13	12.3	0.1	2.9	3	1	0	3	3	3	0	Dynamin	family
G-alpha	PF00503.20	gi|529043705|ref|YP_008369924.1|	-	0.083	12.0	0.7	1.3	8.1	0.7	2.7	1	1	0	1	1	1	0	G-protein	alpha	subunit
VipB	PF05943.12	gi|529043705|ref|YP_008369924.1|	-	0.11	11.3	0.6	0.17	10.6	0.6	1.2	1	0	0	1	1	1	0	Type	VI	secretion	protein,	EvpB/VC_A0108,	tail	sheath
AAA_5	PF07728.14	gi|529043705|ref|YP_008369924.1|	-	0.12	12.3	0.1	0.51	10.3	0.0	2.1	2	0	0	2	2	1	0	AAA	domain	(dynein-related	subfamily)
DUF4047	PF13256.6	gi|529043705|ref|YP_008369924.1|	-	0.13	12.5	5.9	0.11	12.7	0.8	2.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4047)
T3SSipB	PF16535.5	gi|529043705|ref|YP_008369924.1|	-	0.4	11.1	9.6	0.14	12.6	0.5	3.7	4	0	0	4	4	4	0	Type	III	cell	invasion	protein	SipB
XhlA	PF10779.9	gi|529043705|ref|YP_008369924.1|	-	1.2	9.4	4.8	4.6	7.5	0.3	3.3	2	0	0	2	2	2	0	Haemolysin	XhlA
AAA_16	PF13191.6	gi|529043705|ref|YP_008369924.1|	-	1.4	9.3	13.3	0.33	11.3	1.3	4.4	4	1	0	4	4	4	0	AAA	ATPase	domain
PspB	PF06667.12	gi|529043706|ref|YP_008369925.1|	-	0.27	11.3	1.2	6.3	6.9	0.6	3.0	3	0	0	3	3	3	0	Phage	shock	protein	B
FlgN	PF05130.12	gi|529043706|ref|YP_008369925.1|	-	0.54	10.7	2.0	3.1	8.3	0.5	2.5	3	0	0	3	3	3	0	FlgN	protein
DUF848	PF05852.11	gi|529043706|ref|YP_008369925.1|	-	1	9.5	14.2	0.68	10.0	2.5	3.3	3	1	1	4	4	4	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
DDE_Tnp_IS66	PF03050.14	gi|529043707|ref|YP_008369926.1|	-	1.3e-49	169.2	0.2	1.3e-49	169.2	0.2	1.5	2	0	0	2	2	2	1	Transposase	IS66	family
zf-IS66	PF13005.7	gi|529043707|ref|YP_008369926.1|	-	2.6e-06	27.7	5.5	2.6e-06	27.7	5.5	2.2	2	0	0	2	2	2	1	zinc-finger	binding	domain	of	transposase	IS66
PKcGMP_CC	PF16808.5	gi|529043707|ref|YP_008369926.1|	-	0.00053	19.8	11.2	0.0015	18.3	11.2	1.8	1	0	0	1	1	1	1	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
CCDC-167	PF15188.6	gi|529043707|ref|YP_008369926.1|	-	0.0073	16.6	0.8	0.022	15.1	0.8	1.7	1	0	0	1	1	1	1	Coiled-coil	domain-containing	protein	167
ERM	PF00769.19	gi|529043707|ref|YP_008369926.1|	-	0.01	15.7	4.8	0.022	14.6	4.1	1.9	2	0	0	2	2	2	0	Ezrin/radixin/moesin	family
SPATA24	PF15175.6	gi|529043707|ref|YP_008369926.1|	-	0.013	15.4	0.5	0.026	14.4	0.5	1.4	1	0	0	1	1	1	0	Spermatogenesis-associated	protein	24
DZR	PF12773.7	gi|529043707|ref|YP_008369926.1|	-	0.052	13.6	2.6	0.12	12.4	2.6	1.6	1	0	0	1	1	1	0	Double	zinc	ribbon
SlyX	PF04102.12	gi|529043707|ref|YP_008369926.1|	-	0.054	14.1	2.0	0.19	12.4	2.0	2.0	1	0	0	1	1	1	0	SlyX
Med4	PF10018.9	gi|529043707|ref|YP_008369926.1|	-	0.074	12.7	0.7	0.15	11.8	0.7	1.5	1	0	0	1	1	1	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
HSBP1	PF06825.12	gi|529043707|ref|YP_008369926.1|	-	0.092	12.6	5.3	0.15	12.0	1.5	2.3	1	1	1	2	2	2	0	Heat	shock	factor	binding	protein	1
FTA4	PF13093.6	gi|529043707|ref|YP_008369926.1|	-	0.13	12.1	2.9	0.5	10.2	0.2	2.4	2	1	0	2	2	2	0	Kinetochore	complex	Fta4	of	Sim4	subunit,	or	CENP-50
DivIC	PF04977.15	gi|529043707|ref|YP_008369926.1|	-	0.15	11.8	5.0	0.11	12.2	2.2	2.2	2	0	0	2	2	2	0	Septum	formation	initiator
DDE_Tnp_IS240	PF13610.6	gi|529043707|ref|YP_008369926.1|	-	0.17	12.1	1.2	0.28	11.4	0.0	2.0	2	1	0	2	2	2	0	DDE	domain
zf-FPG_IleRS	PF06827.14	gi|529043707|ref|YP_008369926.1|	-	0.24	11.3	5.1	6	6.8	0.3	3.2	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
Prefoldin_2	PF01920.20	gi|529043707|ref|YP_008369926.1|	-	0.28	11.2	6.0	0.71	9.9	6.0	1.6	1	0	0	1	1	1	0	Prefoldin	subunit
UPF0449	PF15136.6	gi|529043707|ref|YP_008369926.1|	-	0.28	11.7	5.9	2.5	8.6	2.2	2.7	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0449
HOOK	PF05622.12	gi|529043707|ref|YP_008369926.1|	-	0.55	8.3	3.7	0.85	7.7	3.7	1.2	1	0	0	1	1	1	0	HOOK	protein
Zn-ribbon_8	PF09723.10	gi|529043707|ref|YP_008369926.1|	-	0.85	9.8	5.5	14	5.9	0.8	2.6	2	0	0	2	2	2	0	Zinc	ribbon	domain
YhfH	PF14149.6	gi|529043707|ref|YP_008369926.1|	-	1.6	8.8	4.9	1.3	9.1	1.0	2.3	2	0	0	2	2	2	0	YhfH-like	protein
ABC_tran_CTD	PF16326.5	gi|529043707|ref|YP_008369926.1|	-	4	7.8	11.7	0.24	11.7	5.3	2.4	3	0	0	3	3	2	0	ABC	transporter	C-terminal	domain
DHHC	PF01529.20	gi|529043709|ref|YP_008369928.1|	-	0.11	12.6	2.6	0.12	12.5	2.6	1.0	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
DUF4538	PF15061.6	gi|529043709|ref|YP_008369928.1|	-	0.48	10.2	0.2	0.48	10.2	0.2	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4538)
Apolipoprotein	PF01442.18	gi|529043710|ref|YP_008369929.1|	-	0.0012	18.7	2.4	0.0029	17.5	2.4	1.5	1	0	0	1	1	1	1	Apolipoprotein	A1/A4/E	domain
ISG65-75	PF11727.8	gi|529043710|ref|YP_008369929.1|	-	0.045	13.0	1.1	0.083	12.1	1.1	1.4	1	0	0	1	1	1	0	Invariant	surface	glycoprotein
YtxH	PF12732.7	gi|529043710|ref|YP_008369929.1|	-	2.4	8.8	8.0	43	4.7	4.9	3.7	2	1	0	2	2	2	0	YtxH-like	protein
HisKA_3	PF07730.13	gi|529043710|ref|YP_008369929.1|	-	5.7	7.5	6.5	25	5.5	0.1	3.0	3	1	1	4	4	4	0	Histidine	kinase
NTP_transf_5	PF14907.6	gi|529043711|ref|YP_008369930.1|	-	0.006	16.2	1.7	0.024	14.3	1.7	2.0	1	1	0	1	1	1	1	Uncharacterised	nucleotidyltransferase
Glyoxalase	PF00903.25	gi|529043711|ref|YP_008369930.1|	-	0.0077	16.4	0.3	0.22	11.7	0.0	2.5	2	1	0	2	2	2	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
TrmB	PF01978.19	gi|529043712|ref|YP_008369931.1|	-	1.6e-15	56.7	0.4	2.7e-08	33.6	0.0	2.6	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|529043712|ref|YP_008369931.1|	-	2e-15	56.4	0.8	4.2e-07	29.8	0.2	2.5	2	0	0	2	2	2	2	MarR	family
MarR	PF01047.22	gi|529043712|ref|YP_008369931.1|	-	5.1e-13	48.7	0.2	6.7e-06	25.9	0.0	2.5	2	0	0	2	2	2	2	MarR	family
Fe_dep_repress	PF01325.19	gi|529043712|ref|YP_008369931.1|	-	5.6e-10	39.3	1.2	0.0013	18.9	0.2	2.8	2	0	0	2	2	2	2	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_24	PF13412.6	gi|529043712|ref|YP_008369931.1|	-	1.2e-09	37.5	0.1	7.2e-05	22.3	0.0	2.6	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|529043712|ref|YP_008369931.1|	-	2.4e-09	36.9	1.1	7.2e-06	25.8	0.0	2.4	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
HTH_Crp_2	PF13545.6	gi|529043712|ref|YP_008369931.1|	-	6e-09	35.8	0.3	4.9e-06	26.4	0.0	3.4	3	0	0	3	3	3	1	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|529043712|ref|YP_008369931.1|	-	8.7e-09	35.1	7.6	4.4e-08	32.8	0.2	3.1	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|529043712|ref|YP_008369931.1|	-	1.4e-08	35.0	0.4	0.00066	20.0	0.0	2.5	2	0	0	2	2	2	2	Transcriptional	regulator
HTH_11	PF08279.12	gi|529043712|ref|YP_008369931.1|	-	4e-08	33.1	0.1	5.4e-06	26.3	0.0	2.7	2	0	0	2	2	2	1	HTH	domain
HTH_20	PF12840.7	gi|529043712|ref|YP_008369931.1|	-	4.6e-07	29.8	0.9	0.0032	17.5	0.0	2.4	2	0	0	2	2	2	2	Helix-turn-helix	domain
GntR	PF00392.21	gi|529043712|ref|YP_008369931.1|	-	8.9e-07	28.5	0.1	0.0022	17.6	0.0	3.3	3	0	0	3	3	3	1	Bacterial	regulatory	proteins,	gntR	family
HTH_27	PF13463.6	gi|529043712|ref|YP_008369931.1|	-	1.7e-06	28.4	0.5	0.03	14.8	0.1	2.6	2	0	0	2	2	2	2	Winged	helix	DNA-binding	domain
HTH_29	PF13551.6	gi|529043712|ref|YP_008369931.1|	-	9.8e-05	22.3	0.1	0.34	10.9	0.0	2.6	2	0	0	2	2	2	2	Winged	helix-turn	helix
Penicillinase_R	PF03965.16	gi|529043712|ref|YP_008369931.1|	-	0.00038	20.8	0.1	0.33	11.3	0.0	2.9	3	1	0	3	3	2	1	Penicillinase	repressor
HTH_23	PF13384.6	gi|529043712|ref|YP_008369931.1|	-	0.00048	19.8	0.0	0.28	11.0	0.0	2.9	2	0	0	2	2	2	1	Homeodomain-like	domain
DUF4423	PF14394.6	gi|529043712|ref|YP_008369931.1|	-	0.00062	19.5	0.1	0.31	10.7	0.0	2.4	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4423)
HTH_10	PF04967.12	gi|529043712|ref|YP_008369931.1|	-	0.00072	19.3	0.0	0.19	11.5	0.0	3.3	3	0	0	3	3	3	1	HTH	DNA	binding	domain
HTH_AsnC-type	PF13404.6	gi|529043712|ref|YP_008369931.1|	-	0.0012	18.7	1.0	0.0048	16.7	0.1	2.5	3	0	0	3	3	2	1	AsnC-type	helix-turn-helix	domain
HTH_28	PF13518.6	gi|529043712|ref|YP_008369931.1|	-	0.0021	18.1	0.0	0.92	9.7	0.0	2.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|529043712|ref|YP_008369931.1|	-	0.0022	17.9	0.5	2.7	8.0	0.1	2.6	2	0	0	2	2	2	2	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
PaaX	PF07848.12	gi|529043712|ref|YP_008369931.1|	-	0.0041	17.3	0.2	2.2	8.6	0.0	2.4	2	0	0	2	2	2	1	PaaX-like	protein
HTH_45	PF14947.6	gi|529043712|ref|YP_008369931.1|	-	0.0047	16.9	0.0	0.03	14.3	0.0	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix
HTH_36	PF13730.6	gi|529043712|ref|YP_008369931.1|	-	0.0057	16.6	0.0	0.015	15.3	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
z-alpha	PF02295.17	gi|529043712|ref|YP_008369931.1|	-	0.0059	16.6	0.0	0.032	14.3	0.0	2.2	2	0	0	2	2	2	1	Adenosine	deaminase	z-alpha	domain
HTH_38	PF13936.6	gi|529043712|ref|YP_008369931.1|	-	0.0064	16.2	0.1	0.36	10.6	0.0	3.1	3	0	0	3	3	2	1	Helix-turn-helix	domain
LexA_DNA_bind	PF01726.16	gi|529043712|ref|YP_008369931.1|	-	0.0067	16.2	0.0	0.14	12.0	0.0	2.5	2	0	0	2	2	2	1	LexA	DNA	binding	domain
Phage_rep_O	PF04492.13	gi|529043712|ref|YP_008369931.1|	-	0.0096	16.5	0.0	0.082	13.5	0.0	2.3	2	0	0	2	2	2	1	Bacteriophage	replication	protein	O
HTH_17	PF12728.7	gi|529043712|ref|YP_008369931.1|	-	0.0099	16.1	0.7	6	7.1	0.0	3.4	4	0	0	4	4	2	0	Helix-turn-helix	domain
FtsK_gamma	PF09397.10	gi|529043712|ref|YP_008369931.1|	-	0.011	15.5	0.1	0.054	13.3	0.1	2.1	2	0	0	2	2	2	0	Ftsk	gamma	domain
DUF2250	PF10007.9	gi|529043712|ref|YP_008369931.1|	-	0.015	15.4	0.8	7.9	6.7	0.0	2.7	3	0	0	3	3	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Sulfolobus_pRN	PF05584.11	gi|529043712|ref|YP_008369931.1|	-	0.015	15.3	0.1	0.069	13.2	0.0	2.1	2	0	0	2	2	2	0	Sulfolobus	plasmid	regulatory	protein
HTH_DeoR	PF08220.12	gi|529043712|ref|YP_008369931.1|	-	0.016	15.0	0.0	0.048	13.4	0.0	1.9	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
SpoIIID	PF12116.8	gi|529043712|ref|YP_008369931.1|	-	0.017	15.2	0.1	0.13	12.3	0.0	2.4	3	0	0	3	3	2	0	Stage	III	sporulation	protein	D
YdaS_antitoxin	PF15943.5	gi|529043712|ref|YP_008369931.1|	-	0.019	14.8	0.1	5.2	7.0	0.0	3.1	3	0	0	3	3	3	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_CodY	PF08222.11	gi|529043712|ref|YP_008369931.1|	-	0.043	13.4	0.0	0.18	11.4	0.0	1.9	2	0	0	2	2	2	0	CodY	helix-turn-helix	domain
HTH_7	PF02796.15	gi|529043712|ref|YP_008369931.1|	-	0.072	13.2	0.0	0.18	11.9	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
RepL	PF05732.11	gi|529043712|ref|YP_008369931.1|	-	0.093	12.2	0.0	0.24	10.8	0.0	1.8	1	1	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
RP-C	PF03428.13	gi|529043712|ref|YP_008369931.1|	-	0.13	11.9	0.4	0.65	9.6	0.0	2.3	3	0	0	3	3	3	0	Replication	protein	C	N-terminal	domain
HTH_Tnp_4	PF13613.6	gi|529043712|ref|YP_008369931.1|	-	0.13	12.0	0.5	0.69	9.7	0.1	2.3	2	0	0	2	2	2	0	Helix-turn-helix	of	DDE	superfamily	endonuclease
DUF903	PF06004.12	gi|529043712|ref|YP_008369931.1|	-	0.16	11.9	0.1	1.7	8.6	0.0	2.2	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF903)
HTH_41	PF14502.6	gi|529043712|ref|YP_008369931.1|	-	0.16	11.7	0.1	8.8	6.1	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
FaeA	PF04703.12	gi|529043712|ref|YP_008369931.1|	-	0.31	11.4	3.3	0.38	11.2	0.1	2.5	2	0	0	2	2	2	0	FaeA-like	protein
PaaB	PF06243.11	gi|529043713|ref|YP_008369932.1|	-	0.046	13.9	0.0	0.1	12.9	0.0	1.5	1	0	0	1	1	1	0	Phenylacetic	acid	degradation	B
KfrA_N	PF11740.8	gi|529043714|ref|YP_008369933.1|	-	0.011	16.4	6.6	2.6	8.7	1.2	4.2	3	0	0	3	3	3	0	Plasmid	replication	region	DNA-binding	N-term
AAA_22	PF13401.6	gi|529043714|ref|YP_008369933.1|	-	0.023	15.0	0.0	7.2	6.9	0.0	3.9	3	0	0	3	3	3	0	AAA	domain
AFG1_ATPase	PF03969.16	gi|529043714|ref|YP_008369933.1|	-	0.11	11.4	0.0	0.28	10.0	0.0	1.6	1	0	0	1	1	1	0	AFG1-like	ATPase
DUF1415	PF07209.12	gi|529043714|ref|YP_008369933.1|	-	0.11	12.2	0.0	0.52	10.0	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1415)
HEPN	PF05168.14	gi|529043714|ref|YP_008369933.1|	-	0.42	10.8	1.9	0.98	9.6	0.1	2.7	3	0	0	3	3	3	0	HEPN	domain
DUF1788	PF08747.11	gi|529043715|ref|YP_008369934.1|	-	1.2e-14	54.3	0.0	1.6e-14	53.9	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1788)
EIIA-man	PF03610.16	gi|529043715|ref|YP_008369934.1|	-	0.0015	18.7	0.0	0.0024	18.1	0.0	1.3	1	0	0	1	1	1	1	PTS	system	fructose	IIA	component
TPR_MLP1_2	PF07926.12	gi|529043716|ref|YP_008369935.1|	-	0.058	13.4	2.0	0.24	11.5	2.0	2.1	1	0	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
ABC_tran	PF00005.27	gi|529043716|ref|YP_008369935.1|	-	0.1	13.1	0.0	0.38	11.3	0.0	2.0	1	0	0	1	1	1	0	ABC	transporter
DUF2791	PF10923.8	gi|529043716|ref|YP_008369935.1|	-	0.4	9.5	1.5	13	4.5	0.0	2.3	2	0	0	2	2	2	0	P-loop	Domain	of	unknown	function	(DUF2791)
HWE_HK	PF07536.14	gi|529043716|ref|YP_008369935.1|	-	1.4	9.7	3.8	8.3	7.2	0.4	3.1	3	0	0	3	3	3	0	HWE	histidine	kinase
COX1	PF00115.20	gi|529076461|ref|YP_008375464.1|	-	6.2e-147	489.9	61.0	8.3e-147	489.5	61.0	1.2	1	0	0	1	1	1	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
ChpA-C	PF03777.13	gi|529076462|ref|YP_008375465.1|	-	0.022	14.6	0.4	0.048	13.5	0.4	1.6	1	0	0	1	1	1	0	ChpA-C
DUF2721	PF11026.8	gi|529076462|ref|YP_008375465.1|	-	0.042	13.7	1.3	0.052	13.4	1.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2721)
Phage_holin_3_6	PF07332.11	gi|529076462|ref|YP_008375465.1|	-	0.078	13.0	2.3	0.095	12.8	2.3	1.1	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
RDD	PF06271.12	gi|529076462|ref|YP_008375465.1|	-	0.093	12.9	2.3	0.11	12.7	2.3	1.1	1	0	0	1	1	1	0	RDD	family
DUF3007	PF11460.8	gi|529076462|ref|YP_008375465.1|	-	0.26	11.6	0.9	0.32	11.3	0.9	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3007)
GTA_holin_3TM	PF11351.8	gi|529076462|ref|YP_008375465.1|	-	0.36	11.4	2.2	0.51	10.9	2.2	1.2	1	0	0	1	1	1	0	Holin	of	3TMs,	for	gene-transfer	release
Cyt_c_ox_IV	PF12270.8	gi|529076463|ref|YP_008375466.1|	-	0.029	14.5	1.5	0.029	14.5	1.5	2.4	2	1	1	3	3	3	0	Cytochrome	c	oxidase	subunit	IV
Peptidase_A21	PF03566.13	gi|529076463|ref|YP_008375466.1|	-	0.17	10.1	0.0	0.18	10.1	0.0	1.0	1	0	0	1	1	1	0	Peptidase	family	A21
APG6_N	PF17675.1	gi|529076464|ref|YP_008375467.1|	-	6.4e-05	23.5	8.9	0.00016	22.2	8.9	1.6	1	0	0	1	1	1	1	Apg6	coiled-coil	region
CENP-F_leu_zip	PF10473.9	gi|529076464|ref|YP_008375467.1|	-	7.2e-05	22.8	8.8	0.00013	22.0	8.8	1.3	1	0	0	1	1	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF16	PF01519.16	gi|529076464|ref|YP_008375467.1|	-	0.00041	20.8	2.2	0.00081	19.8	2.2	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF16
DivIC	PF04977.15	gi|529076464|ref|YP_008375467.1|	-	0.00086	19.0	10.6	0.073	12.9	0.5	2.3	1	1	1	2	2	2	2	Septum	formation	initiator
DUF812	PF05667.11	gi|529076464|ref|YP_008375467.1|	-	0.0009	18.2	8.7	0.0009	18.2	8.7	1.6	2	0	0	2	2	1	1	Protein	of	unknown	function	(DUF812)
ATG16	PF08614.11	gi|529076464|ref|YP_008375467.1|	-	0.0014	18.9	11.0	0.0014	18.9	11.0	3.3	2	1	0	2	2	1	1	Autophagy	protein	16	(ATG16)
HAUS-augmin3	PF14932.6	gi|529076464|ref|YP_008375467.1|	-	0.0014	18.2	2.6	0.0027	17.3	2.6	1.4	1	0	0	1	1	1	1	HAUS	augmin-like	complex	subunit	3
YabA	PF06156.13	gi|529076464|ref|YP_008375467.1|	-	0.0016	19.0	2.0	0.0074	16.9	1.6	2.2	2	0	0	2	2	1	1	Initiation	control	protein	YabA
DUF4201	PF13870.6	gi|529076464|ref|YP_008375467.1|	-	0.002	17.9	2.3	0.0045	16.7	2.3	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4201)
Cep57_CLD_2	PF14197.6	gi|529076464|ref|YP_008375467.1|	-	0.0025	17.9	14.6	0.005	16.9	14.6	1.5	1	0	0	1	1	1	1	Centrosome	localisation	domain	of	PPC89
Golgin_A5	PF09787.9	gi|529076464|ref|YP_008375467.1|	-	0.0033	16.9	4.4	0.0061	16.1	4.4	1.4	1	0	0	1	1	1	1	Golgin	subfamily	A	member	5
FPP	PF05911.11	gi|529076464|ref|YP_008375467.1|	-	0.0036	15.6	3.4	0.0036	15.6	3.4	1.9	2	0	0	2	2	1	1	Filament-like	plant	protein,	long	coiled-coil
FapA	PF03961.13	gi|529076464|ref|YP_008375467.1|	-	0.0063	15.2	0.7	0.0097	14.6	0.7	1.2	1	0	0	1	1	1	1	Flagellar	Assembly	Protein	A
Fmp27_WPPW	PF10359.9	gi|529076464|ref|YP_008375467.1|	-	0.0074	15.2	1.6	0.016	14.1	1.6	1.5	1	0	0	1	1	1	1	RNA	pol	II	promoter	Fmp27	protein	domain
DUF4686	PF15742.5	gi|529076464|ref|YP_008375467.1|	-	0.0081	15.3	6.0	0.012	14.8	6.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4686)
Fez1	PF06818.15	gi|529076464|ref|YP_008375467.1|	-	0.0085	16.6	5.9	0.0085	16.6	5.9	1.7	2	0	0	2	2	1	1	Fez1
DUF1664	PF07889.12	gi|529076464|ref|YP_008375467.1|	-	0.0098	15.9	0.8	0.019	15.0	0.8	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1664)
Tropomyosin	PF00261.20	gi|529076464|ref|YP_008375467.1|	-	0.01	15.3	11.1	0.023	14.1	11.1	1.6	1	0	0	1	1	1	0	Tropomyosin
Mod_r	PF07200.13	gi|529076464|ref|YP_008375467.1|	-	0.011	15.9	0.9	0.023	14.8	0.9	1.5	1	0	0	1	1	1	0	Modifier	of	rudimentary	(Mod(r))	protein
DUF4200	PF13863.6	gi|529076464|ref|YP_008375467.1|	-	0.014	15.8	6.4	0.023	15.1	5.7	1.7	2	0	0	2	2	1	0	Domain	of	unknown	function	(DUF4200)
DUF4472	PF14739.6	gi|529076464|ref|YP_008375467.1|	-	0.014	16.1	5.1	0.048	14.4	5.1	1.9	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4472)
BLOC1_2	PF10046.9	gi|529076464|ref|YP_008375467.1|	-	0.016	15.5	0.9	0.04	14.2	0.9	1.6	1	0	0	1	1	1	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
UPF0242	PF06785.11	gi|529076464|ref|YP_008375467.1|	-	0.017	15.2	3.9	0.033	14.3	3.9	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
AAA_23	PF13476.6	gi|529076464|ref|YP_008375467.1|	-	0.019	15.5	0.9	0.037	14.5	0.9	1.5	1	0	0	1	1	1	0	AAA	domain
Atg14	PF10186.9	gi|529076464|ref|YP_008375467.1|	-	0.02	14.0	1.9	0.033	13.3	1.9	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
XhlA	PF10779.9	gi|529076464|ref|YP_008375467.1|	-	0.02	15.1	5.8	0.044	14.0	5.8	1.6	1	0	0	1	1	1	0	Haemolysin	XhlA
PI3K_P85_iSH2	PF16454.5	gi|529076464|ref|YP_008375467.1|	-	0.022	14.3	0.7	0.039	13.6	0.7	1.3	1	0	0	1	1	1	0	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
TEX13	PF15186.6	gi|529076464|ref|YP_008375467.1|	-	0.025	14.2	5.8	0.051	13.3	5.8	1.4	1	0	0	1	1	1	0	Testis-expressed	sequence	13	protein	family
GAS	PF13851.6	gi|529076464|ref|YP_008375467.1|	-	0.03	13.7	1.8	0.054	12.8	1.8	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
Lebercilin	PF15619.6	gi|529076464|ref|YP_008375467.1|	-	0.033	13.8	5.7	0.07	12.8	5.7	1.5	1	0	0	1	1	1	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
DUF2730	PF10805.8	gi|529076464|ref|YP_008375467.1|	-	0.034	14.2	2.5	0.064	13.3	2.5	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
FlxA	PF14282.6	gi|529076464|ref|YP_008375467.1|	-	0.035	14.1	0.6	0.2	11.7	0.6	2.3	1	0	0	1	1	1	0	FlxA-like	protein
V-SNARE	PF05008.15	gi|529076464|ref|YP_008375467.1|	-	0.041	14.3	4.4	0.096	13.1	4.4	1.6	1	0	0	1	1	1	0	Vesicle	transport	v-SNARE	protein	N-terminus
ABC_tran_CTD	PF16326.5	gi|529076464|ref|YP_008375467.1|	-	0.044	14.0	11.9	0.18	12.1	11.9	2.1	1	0	0	1	1	1	0	ABC	transporter	C-terminal	domain
Seryl_tRNA_N	PF02403.22	gi|529076464|ref|YP_008375467.1|	-	0.045	14.0	7.2	1.1	9.5	0.3	2.5	1	1	1	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
AAA_13	PF13166.6	gi|529076464|ref|YP_008375467.1|	-	0.046	12.4	2.0	0.08	11.6	2.0	1.3	1	0	0	1	1	1	0	AAA	domain
Spc7	PF08317.11	gi|529076464|ref|YP_008375467.1|	-	0.047	12.6	5.1	0.089	11.7	5.1	1.4	1	0	0	1	1	1	0	Spc7	kinetochore	protein
DUF3450	PF11932.8	gi|529076464|ref|YP_008375467.1|	-	0.06	12.7	7.8	0.12	11.7	7.3	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
SHE3	PF17078.5	gi|529076464|ref|YP_008375467.1|	-	0.062	13.0	2.9	0.1	12.3	2.9	1.2	1	0	0	1	1	1	0	SWI5-dependent	HO	expression	protein	3
DUF2968	PF11180.8	gi|529076464|ref|YP_008375467.1|	-	0.067	12.8	2.5	0.15	11.6	2.5	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2968)
HOOK	PF05622.12	gi|529076464|ref|YP_008375467.1|	-	0.079	11.1	6.4	0.12	10.5	6.4	1.1	1	0	0	1	1	1	0	HOOK	protein
THOC7	PF05615.13	gi|529076464|ref|YP_008375467.1|	-	0.08	13.2	6.1	0.18	12.1	6.1	1.5	1	0	0	1	1	1	0	Tho	complex	subunit	7
ZapB	PF06005.12	gi|529076464|ref|YP_008375467.1|	-	0.084	13.3	9.7	0.26	11.8	9.7	1.8	1	0	0	1	1	1	0	Cell	division	protein	ZapB
CCDC-167	PF15188.6	gi|529076464|ref|YP_008375467.1|	-	0.094	13.1	11.1	0.23	11.8	11.1	1.6	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	167
Prefoldin_2	PF01920.20	gi|529076464|ref|YP_008375467.1|	-	0.095	12.7	5.3	0.23	11.4	5.3	1.7	1	0	0	1	1	1	0	Prefoldin	subunit
Ax_dynein_light	PF10211.9	gi|529076464|ref|YP_008375467.1|	-	0.12	12.3	4.0	0.26	11.2	4.0	1.5	1	0	0	1	1	1	0	Axonemal	dynein	light	chain
STAT_alpha	PF01017.20	gi|529076464|ref|YP_008375467.1|	-	0.15	11.9	0.2	0.31	10.9	0.2	1.4	1	0	0	1	1	1	0	STAT	protein,	all-alpha	domain
GrpE	PF01025.19	gi|529076464|ref|YP_008375467.1|	-	0.16	11.6	3.0	0.35	10.5	3.0	1.5	1	0	0	1	1	1	0	GrpE
bZIP_1	PF00170.21	gi|529076464|ref|YP_008375467.1|	-	0.16	12.1	3.7	0.44	10.7	3.7	1.8	1	0	0	1	1	1	0	bZIP	transcription	factor
CEP63	PF17045.5	gi|529076464|ref|YP_008375467.1|	-	0.17	11.7	6.2	0.29	11.0	6.2	1.3	1	0	0	1	1	1	0	Centrosomal	protein	of	63	kDa
DUF724	PF05266.14	gi|529076464|ref|YP_008375467.1|	-	0.21	11.4	4.9	0.38	10.6	4.9	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
FlaC_arch	PF05377.11	gi|529076464|ref|YP_008375467.1|	-	0.23	11.9	4.4	0.58	10.6	3.8	2.0	1	1	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
V_ATPase_I	PF01496.19	gi|529076464|ref|YP_008375467.1|	-	0.34	8.8	0.6	0.69	7.7	0.6	1.4	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Phage_GP20	PF06810.11	gi|529076464|ref|YP_008375467.1|	-	0.69	9.7	6.3	1.5	8.6	2.7	2.3	1	1	1	2	2	2	0	Phage	minor	structural	protein	GP20
CorA	PF01544.18	gi|529076464|ref|YP_008375467.1|	-	0.7	9.2	2.3	1.3	8.3	2.3	1.3	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
TPR_MLP1_2	PF07926.12	gi|529076464|ref|YP_008375467.1|	-	0.84	9.7	14.3	0.061	13.4	8.9	1.9	2	0	0	2	2	1	0	TPR/MLP1/MLP2-like	protein
TMF_DNA_bd	PF12329.8	gi|529076464|ref|YP_008375467.1|	-	1	9.4	10.0	2.1	8.4	10.0	1.5	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
Prefoldin	PF02996.17	gi|529076464|ref|YP_008375467.1|	-	1.1	9.2	4.0	2.8	7.9	3.9	1.8	1	1	0	1	1	1	0	Prefoldin	subunit
DUF4337	PF14235.6	gi|529076464|ref|YP_008375467.1|	-	1.5	8.9	3.1	4.1	7.5	3.1	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4337)
Syntaxin-6_N	PF09177.11	gi|529076464|ref|YP_008375467.1|	-	1.6	9.3	8.4	8.3	7.0	2.3	2.5	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
DUF4140	PF13600.6	gi|529076464|ref|YP_008375467.1|	-	2.1	8.8	17.7	4	7.9	5.2	3.1	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
HALZ	PF02183.18	gi|529076464|ref|YP_008375467.1|	-	2.2	8.5	8.3	8	6.8	0.5	2.4	1	1	1	2	2	2	0	Homeobox	associated	leucine	zipper
Csm1_N	PF18504.1	gi|529076464|ref|YP_008375467.1|	-	2.9	8.3	8.6	1.4	9.3	4.4	2.3	1	1	1	2	2	2	0	Csm1	N-terminal	domain
FUSC	PF04632.12	gi|529076464|ref|YP_008375467.1|	-	3.9	5.9	5.1	7.8	4.9	5.1	1.4	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
SlyX	PF04102.12	gi|529076464|ref|YP_008375467.1|	-	5.1	7.8	10.0	17	6.1	10.0	2.0	1	0	0	1	1	1	0	SlyX
ADIP	PF11559.8	gi|529076464|ref|YP_008375467.1|	-	7.2	6.7	11.5	1.5	8.9	7.6	1.8	2	0	0	2	2	1	0	Afadin-	and	alpha	-actinin-Binding
M	PF02370.16	gi|529076464|ref|YP_008375467.1|	-	7.9	7.4	8.6	27	5.8	0.4	3.4	1	1	2	3	3	3	0	M	protein	repeat
HTH_12	PF08461.10	gi|529076465|ref|YP_008375468.1|	-	0.014	15.4	0.0	0.02	14.8	0.0	1.4	1	0	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
Phage_rep_org_N	PF09681.10	gi|529076465|ref|YP_008375468.1|	-	0.053	13.5	0.1	0.056	13.4	0.1	1.2	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
Adenylsucc_synt	PF00709.21	gi|529076466|ref|YP_008375469.1|	-	7.1e-156	519.3	0.0	8.2e-156	519.1	0.0	1.0	1	0	0	1	1	1	1	Adenylosuccinate	synthetase
GFO_IDH_MocA	PF01408.22	gi|529076467|ref|YP_008375470.1|	-	1.3e-17	64.7	0.0	2.3e-17	64.0	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
TPR_12	PF13424.6	gi|529076467|ref|YP_008375470.1|	-	0.04	14.2	0.9	0.14	12.5	0.4	2.0	2	0	0	2	2	2	0	Tetratricopeptide	repeat
Imm21	PF15589.6	gi|529076467|ref|YP_008375470.1|	-	0.16	12.1	0.7	3.1	7.9	0.1	2.3	2	0	0	2	2	2	0	Immunity	protein	21
Trm112p	PF03966.16	gi|529076468|ref|YP_008375471.1|	-	1.8e-10	41.2	0.6	3.1e-10	40.5	0.6	1.4	1	1	0	1	1	1	1	Trm112p-like	protein
Trp_oprn_chp	PF09534.10	gi|529076469|ref|YP_008375472.1|	-	0.0065	16.3	2.4	0.0065	16.3	2.4	2.1	1	1	1	2	2	2	1	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
DUF3040	PF11239.8	gi|529076469|ref|YP_008375472.1|	-	0.0073	16.6	3.0	0.016	15.5	3.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3040)
DUF3247	PF11607.8	gi|529076469|ref|YP_008375472.1|	-	0.12	12.6	0.2	0.21	11.9	0.2	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3247)
Promethin	PF16015.5	gi|529076469|ref|YP_008375472.1|	-	2	8.4	10.4	2.9	7.9	10.4	1.2	1	0	0	1	1	1	0	Promethin
DUF4366	PF14283.6	gi|529076469|ref|YP_008375472.1|	-	5.4	7.1	6.9	0.35	10.9	1.0	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4366)
tRNA-synt_1e	PF01406.19	gi|529076471|ref|YP_008375474.1|	-	5.8e-105	351.0	0.0	1.5e-103	346.3	0.0	2.1	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(C)	catalytic	domain
DALR_2	PF09190.11	gi|529076471|ref|YP_008375474.1|	-	7.8e-10	39.1	0.1	2.4e-09	37.5	0.0	1.9	2	0	0	2	2	2	1	DALR	domain
tRNA-synt_1g	PF09334.11	gi|529076471|ref|YP_008375474.1|	-	3e-08	32.8	0.0	0.00076	18.3	0.0	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1f	PF01921.18	gi|529076471|ref|YP_008375474.1|	-	1.8e-05	23.9	0.0	0.014	14.4	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(K)
UVR	PF02151.19	gi|529076471|ref|YP_008375474.1|	-	0.0092	15.7	0.1	0.031	14.0	0.1	1.9	1	0	0	1	1	1	1	UvrB/uvrC	motif
tRNA-synt_1	PF00133.22	gi|529076471|ref|YP_008375474.1|	-	0.033	12.5	0.1	0.06	11.6	0.0	1.4	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(I,	L,	M	and	V)
DUF3402	PF11882.8	gi|529076471|ref|YP_008375474.1|	-	0.049	12.7	0.8	0.071	12.2	0.8	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3402)
tRNA-synt_1c	PF00749.21	gi|529076471|ref|YP_008375474.1|	-	0.14	11.0	0.3	0.66	8.8	0.0	2.0	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
FTO_CTD	PF12934.7	gi|529076471|ref|YP_008375474.1|	-	0.16	11.7	0.0	0.28	10.9	0.0	1.4	1	0	0	1	1	1	0	FTO	C-terminal	domain
Uso1_p115_C	PF04871.13	gi|529076471|ref|YP_008375474.1|	-	0.37	11.1	3.3	1.9	8.9	0.7	2.5	2	0	0	2	2	2	0	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
Ion_trans_2	PF07885.16	gi|529076472|ref|YP_008375475.1|	-	0.24	11.4	5.3	0.28	11.2	5.3	1.1	1	0	0	1	1	1	0	Ion	channel
DUF3040	PF11239.8	gi|529076472|ref|YP_008375475.1|	-	7.2	7.0	9.3	9.3	6.6	9.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
PetM	PF08041.11	gi|529076472|ref|YP_008375475.1|	-	9.5	5.9	10.4	0.28	10.8	2.8	2.1	2	1	0	2	2	2	0	PetM	family	of	cytochrome	b6f	complex	subunit	7
CorA	PF01544.18	gi|529076473|ref|YP_008375476.1|	-	3.6e-69	233.3	0.1	4.1e-69	233.1	0.1	1.0	1	0	0	1	1	1	1	CorA-like	Mg2+	transporter	protein
Halo_GVPC	PF05465.13	gi|529076473|ref|YP_008375476.1|	-	0.079	13.2	10.9	0.097	12.9	0.1	3.5	3	1	1	4	4	4	0	Halobacterial	gas	vesicle	protein	C	(GVPC)	repeat
TctA	PF01970.16	gi|529076474|ref|YP_008375477.1|	-	3.3e-62	210.5	41.9	3.9e-62	210.3	41.9	1.0	1	0	0	1	1	1	1	Tripartite	tricarboxylate	transporter	TctA	family
SOR_SNZ	PF01680.17	gi|529076475|ref|YP_008375478.1|	-	2.1e-102	341.2	6.8	2.7e-102	340.9	6.8	1.1	1	0	0	1	1	1	1	SOR/SNZ	family
ThiG	PF05690.14	gi|529076475|ref|YP_008375478.1|	-	1.3e-09	37.8	4.9	1.7e-05	24.3	0.4	2.2	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
OMPdecase	PF00215.24	gi|529076475|ref|YP_008375478.1|	-	0.0018	17.9	1.0	0.53	9.8	0.4	2.5	2	1	1	3	3	3	2	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
IGPS	PF00218.21	gi|529076475|ref|YP_008375478.1|	-	0.0065	15.7	0.1	0.21	10.7	0.0	2.3	2	1	0	2	2	2	1	Indole-3-glycerol	phosphate	synthase
Dus	PF01207.17	gi|529076475|ref|YP_008375478.1|	-	0.015	14.4	2.7	1.9	7.5	0.5	2.3	1	1	0	2	2	2	0	Dihydrouridine	synthase	(Dus)
TetR_C_27	PF17935.1	gi|529076475|ref|YP_008375478.1|	-	0.06	13.4	0.0	0.14	12.2	0.0	1.5	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
MS_channel	PF00924.18	gi|529076476|ref|YP_008375479.1|	-	5.8e-44	150.1	0.9	7.5e-44	149.7	0.0	1.6	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
GHMP_kinases_N	PF00288.26	gi|529076477|ref|YP_008375480.1|	-	4.4e-13	49.2	1.3	4.4e-13	49.2	1.3	2.1	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|529076477|ref|YP_008375480.1|	-	6.4e-07	29.7	0.0	1.6e-06	28.4	0.0	1.7	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
HisKA_7TM	PF16927.5	gi|529076478|ref|YP_008375481.1|	-	3.3e-45	154.8	18.0	4.5e-45	154.4	18.0	1.2	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
HATPase_c	PF02518.26	gi|529076478|ref|YP_008375481.1|	-	1.4e-10	41.7	0.0	2.7e-10	40.8	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|529076478|ref|YP_008375481.1|	-	6.9e-05	22.8	0.0	0.00017	21.5	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HisKA_4TM	PF16926.5	gi|529076478|ref|YP_008375481.1|	-	0.0003	20.4	0.2	0.0003	20.4	0.2	2.1	2	0	0	2	2	2	1	Archaeal	4TM	region	of	histidine	kinase
GAF_3	PF13492.6	gi|529076478|ref|YP_008375481.1|	-	0.00041	20.7	0.0	0.0012	19.2	0.0	1.8	1	0	0	1	1	1	1	GAF	domain
HisKA	PF00512.25	gi|529076478|ref|YP_008375481.1|	-	0.0012	18.9	0.7	0.0012	18.9	0.7	2.7	3	1	1	4	4	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|529076478|ref|YP_008375481.1|	-	0.0014	18.9	6.2	0.005	17.1	0.5	3.5	3	1	0	3	3	2	1	PAS	fold
PAS_8	PF13188.7	gi|529076478|ref|YP_008375481.1|	-	0.0032	17.5	2.6	0.0044	17.0	0.2	2.5	2	0	0	2	2	2	1	PAS	domain
PAS	PF00989.25	gi|529076478|ref|YP_008375481.1|	-	0.011	15.8	0.2	0.064	13.3	0.0	2.4	2	1	0	2	2	2	0	PAS	fold
GAF_2	PF13185.6	gi|529076478|ref|YP_008375481.1|	-	0.021	15.1	1.2	0.14	12.4	0.5	2.7	2	1	0	2	2	2	0	GAF	domain
HATPase_c_5	PF14501.6	gi|529076478|ref|YP_008375481.1|	-	0.029	14.3	0.0	0.061	13.2	0.0	1.4	1	0	0	1	1	1	0	GHKL	domain
SPOB_a	PF14689.6	gi|529076478|ref|YP_008375481.1|	-	0.24	11.1	1.0	0.6	9.9	0.1	2.1	2	0	0	2	2	2	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
Amino_oxidase	PF01593.24	gi|529076479|ref|YP_008375482.1|	-	6.1e-35	121.4	0.0	7.4e-35	121.1	0.0	1.1	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|529076479|ref|YP_008375482.1|	-	4e-14	52.6	0.1	9.5e-14	51.4	0.1	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|529076479|ref|YP_008375482.1|	-	2.1e-11	44.0	4.1	2.6e-10	40.5	4.1	2.0	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|529076479|ref|YP_008375482.1|	-	1e-07	31.5	0.6	4.2e-05	22.8	0.2	2.1	2	0	0	2	2	2	2	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|529076479|ref|YP_008375482.1|	-	1.1e-05	24.9	1.2	1.4e-05	24.5	0.0	1.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|529076479|ref|YP_008375482.1|	-	1.2e-05	24.9	0.4	4.2e-05	23.1	0.1	1.8	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|529076479|ref|YP_008375482.1|	-	0.00013	21.4	0.1	0.0002	20.7	0.1	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox	PF00070.27	gi|529076479|ref|YP_008375482.1|	-	0.00057	20.4	0.5	0.00057	20.4	0.5	1.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|529076479|ref|YP_008375482.1|	-	0.0019	17.0	0.8	0.0027	16.5	0.8	1.2	1	0	0	1	1	1	1	HI0933-like	protein
NAD_binding_9	PF13454.6	gi|529076479|ref|YP_008375482.1|	-	0.0027	17.7	0.3	0.04	13.9	0.0	2.3	2	0	0	2	2	2	1	FAD-NAD(P)-binding
GIDA	PF01134.22	gi|529076479|ref|YP_008375482.1|	-	0.003	16.7	0.1	0.0047	16.1	0.1	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
FMO-like	PF00743.19	gi|529076479|ref|YP_008375482.1|	-	0.0096	14.4	0.0	0.014	13.8	0.0	1.2	1	0	0	1	1	1	1	Flavin-binding	monooxygenase-like
Pyr_redox_3	PF13738.6	gi|529076479|ref|YP_008375482.1|	-	0.036	13.3	0.4	0.1	11.9	0.1	1.7	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
TrkA_N	PF02254.18	gi|529076479|ref|YP_008375482.1|	-	0.046	14.0	0.1	0.087	13.1	0.1	1.5	1	0	0	1	1	1	0	TrkA-N	domain
Lycopene_cycl	PF05834.12	gi|529076479|ref|YP_008375482.1|	-	0.049	12.7	0.0	0.078	12.0	0.0	1.2	1	0	0	1	1	1	0	Lycopene	cyclase	protein
FAD_binding_3	PF01494.19	gi|529076479|ref|YP_008375482.1|	-	0.071	12.3	1.0	0.12	11.6	1.0	1.3	1	0	0	1	1	1	0	FAD	binding	domain
Thi4	PF01946.17	gi|529076479|ref|YP_008375482.1|	-	0.072	12.3	0.4	0.61	9.3	0.3	2.2	2	0	0	2	2	2	0	Thi4	family
F420_oxidored	PF03807.17	gi|529076479|ref|YP_008375482.1|	-	0.1	13.2	0.2	0.66	10.6	0.1	2.2	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
YjeF_N	PF03853.15	gi|529076479|ref|YP_008375482.1|	-	0.12	12.2	0.0	0.18	11.7	0.0	1.3	1	0	0	1	1	1	0	YjeF-related	protein	N-terminus
Trp_halogenase	PF04820.14	gi|529076479|ref|YP_008375482.1|	-	0.13	11.1	0.4	0.18	10.6	0.4	1.2	1	0	0	1	1	1	0	Tryptophan	halogenase
3HCDH_N	PF02737.18	gi|529076479|ref|YP_008375482.1|	-	0.14	12.0	0.0	0.27	11.1	0.0	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
GIDE	PF12483.8	gi|529076480|ref|YP_008375483.1|	-	1.7e-07	30.8	0.0	0.00014	21.3	0.0	2.3	2	0	0	2	2	2	2	E3	Ubiquitin	ligase
TetR_C_30	PF17939.1	gi|529076481|ref|YP_008375484.1|	-	0.018	15.3	0.3	0.031	14.5	0.3	1.4	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
Pyr_redox_2	PF07992.14	gi|529076482|ref|YP_008375485.1|	-	2.5e-43	148.4	0.8	3.1e-43	148.1	0.8	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|529076482|ref|YP_008375485.1|	-	3e-10	39.8	0.0	4e-10	39.4	0.0	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|529076482|ref|YP_008375485.1|	-	4.1e-10	40.1	0.5	0.00011	22.7	0.0	3.4	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Rubredoxin_C	PF18267.1	gi|529076482|ref|YP_008375485.1|	-	8.6e-08	32.0	0.0	1.8e-06	27.8	0.0	2.9	3	0	0	3	3	3	1	Rubredoxin	NAD+	reductase	C-terminal	domain
NAD_binding_8	PF13450.6	gi|529076482|ref|YP_008375485.1|	-	0.0038	17.4	0.4	2	8.7	0.0	3.6	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|529076482|ref|YP_008375485.1|	-	0.0042	15.9	0.0	0.076	11.7	0.0	2.4	3	0	0	3	3	3	1	HI0933-like	protein
Amino_oxidase	PF01593.24	gi|529076482|ref|YP_008375485.1|	-	0.0058	16.0	0.0	0.019	14.3	0.0	1.7	2	0	0	2	2	2	1	Flavin	containing	amine	oxidoreductase
FAD_binding_2	PF00890.24	gi|529076482|ref|YP_008375485.1|	-	0.0099	15.0	1.1	10	5.0	0.1	3.1	2	1	1	3	3	3	2	FAD	binding	domain
Reductase_C	PF14759.6	gi|529076482|ref|YP_008375485.1|	-	0.027	15.0	0.0	0.11	13.1	0.0	2.1	1	0	0	1	1	1	0	Reductase	C-terminal
GETHR	PF05671.11	gi|529076484|ref|YP_008375487.1|	-	0.13	11.7	0.5	17	4.9	0.0	2.5	2	0	0	2	2	2	0	GETHR	pentapeptide	repeat	(5	copies)
DEK_C	PF08766.11	gi|529076486|ref|YP_008375489.1|	-	0.0013	18.6	0.1	0.002	18.0	0.1	1.2	1	0	0	1	1	1	1	DEK	C	terminal	domain
TrmB	PF01978.19	gi|529076486|ref|YP_008375489.1|	-	0.098	12.6	0.0	0.45	10.4	0.0	1.9	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
PMT_2	PF13231.6	gi|529076487|ref|YP_008375490.1|	-	2.1e-11	44.3	9.8	2.1e-11	44.3	9.8	3.1	3	0	0	3	3	3	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
CPSase_L_D2	PF02786.17	gi|529076488|ref|YP_008375491.1|	-	3e-99	330.7	0.4	1e-62	211.4	0.0	2.2	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
CPSase_L_D3	PF02787.19	gi|529076488|ref|YP_008375491.1|	-	1.5e-28	99.6	0.0	3.4e-28	98.4	0.0	1.6	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthetase	large	chain,	oligomerisation	domain
ATP-grasp	PF02222.22	gi|529076488|ref|YP_008375491.1|	-	1.2e-16	60.7	0.0	4.4e-07	29.6	0.0	2.5	2	0	0	2	2	2	2	ATP-grasp	domain
ATPgrasp_Ter	PF15632.6	gi|529076488|ref|YP_008375491.1|	-	3.3e-14	52.7	0.0	2.6e-07	30.4	0.0	2.5	2	0	0	2	2	2	2	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
Dala_Dala_lig_C	PF07478.13	gi|529076488|ref|YP_008375491.1|	-	1.1e-12	47.9	0.0	1.6e-07	31.1	0.0	2.6	2	1	0	2	2	2	2	D-ala	D-ala	ligase	C-terminus
ATP-grasp_3	PF02655.14	gi|529076488|ref|YP_008375491.1|	-	2.4e-10	40.7	0.1	2e-05	24.7	0.0	2.4	2	0	0	2	2	2	2	ATP-grasp	domain
ATP-grasp_5	PF13549.6	gi|529076488|ref|YP_008375491.1|	-	0.042	13.3	0.0	0.33	10.4	0.0	2.5	2	1	1	3	3	3	0	ATP-grasp	domain
HTH_25	PF13413.6	gi|529076488|ref|YP_008375491.1|	-	0.15	11.9	0.3	0.93	9.4	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
Peptidase_M24	PF00557.24	gi|529076490|ref|YP_008375493.1|	-	1.2e-40	139.5	0.3	1.6e-40	139.1	0.3	1.2	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Zn-ribbon_8	PF09723.10	gi|529076491|ref|YP_008375494.1|	-	0.00063	19.8	2.1	0.36	11.0	0.3	2.1	2	0	0	2	2	2	2	Zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|529076491|ref|YP_008375494.1|	-	0.011	15.1	1.0	0.078	12.4	0.2	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.7	gi|529076491|ref|YP_008375494.1|	-	0.011	15.7	1.1	0.02	14.9	1.1	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
Nudix_N_2	PF14803.6	gi|529076491|ref|YP_008375494.1|	-	0.015	15.2	1.3	3.6	7.6	0.1	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
OrfB_Zn_ribbon	PF07282.11	gi|529076491|ref|YP_008375494.1|	-	0.053	13.5	1.3	6.4	6.8	0.1	2.1	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
NOB1_Zn_bind	PF08772.11	gi|529076491|ref|YP_008375494.1|	-	0.055	13.6	0.7	0.13	12.4	0.0	1.8	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Zn_ribbon_SprT	PF17283.2	gi|529076491|ref|YP_008375494.1|	-	0.091	12.7	4.1	0.45	10.5	3.6	2.1	1	1	0	1	1	1	0	SprT-like	zinc	ribbon	domain
DUF35_N	PF12172.8	gi|529076491|ref|YP_008375494.1|	-	0.12	12.3	5.5	0.82	9.6	0.6	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zinc_ribbon_15	PF17032.5	gi|529076491|ref|YP_008375494.1|	-	0.19	12.5	2.9	14	6.5	0.5	2.0	1	1	0	2	2	2	0	zinc-ribbon	family
DNA_ligase_ZBD	PF03119.16	gi|529076491|ref|YP_008375494.1|	-	0.21	11.7	5.4	2	8.5	0.9	2.4	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Zn_Tnp_IS1595	PF12760.7	gi|529076491|ref|YP_008375494.1|	-	0.25	11.4	4.3	8.8	6.4	4.4	2.2	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|529076491|ref|YP_008375494.1|	-	0.42	10.4	4.7	0.77	9.6	0.1	2.6	3	0	0	3	3	3	0	zinc-ribbon	domain
HIT	PF01230.23	gi|529076492|ref|YP_008375495.1|	-	1.4e-12	48.1	0.0	2.7e-12	47.3	0.0	1.4	1	0	0	1	1	1	1	HIT	domain
DcpS_C	PF11969.8	gi|529076492|ref|YP_008375495.1|	-	0.00033	21.1	0.0	0.00064	20.2	0.0	1.5	1	1	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.15	gi|529076492|ref|YP_008375495.1|	-	0.024	14.5	0.1	0.039	13.8	0.0	1.4	2	0	0	2	2	2	0	Protein	similar	to	CwfJ	C-terminus	1
Nmad4	PF18756.1	gi|529076493|ref|YP_008375496.1|	-	0.16	12.3	1.1	0.16	12.3	1.1	1.1	1	0	0	1	1	1	0	Nucleotide	modification	associated	domain	4
Cation_efflux	PF01545.21	gi|529076494|ref|YP_008375497.1|	-	2.6e-40	138.3	6.7	3.3e-40	137.9	6.7	1.1	1	0	0	1	1	1	1	Cation	efflux	family
ZT_dimer	PF16916.5	gi|529076494|ref|YP_008375497.1|	-	1.6e-15	57.0	4.6	2.4e-15	56.4	4.6	1.2	1	0	0	1	1	1	1	Dimerisation	domain	of	Zinc	Transporter
adh_short_C2	PF13561.6	gi|529076495|ref|YP_008375498.1|	-	1.3e-63	214.7	0.1	1.6e-63	214.4	0.1	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|529076495|ref|YP_008375498.1|	-	6.1e-52	175.9	0.1	8.1e-52	175.5	0.1	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|529076495|ref|YP_008375498.1|	-	3.3e-13	49.9	0.1	5.3e-13	49.3	0.1	1.2	1	0	0	1	1	1	1	KR	domain
3Beta_HSD	PF01073.19	gi|529076495|ref|YP_008375498.1|	-	1e-06	28.0	0.1	1.5e-06	27.5	0.1	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Epimerase	PF01370.21	gi|529076495|ref|YP_008375498.1|	-	2.1e-05	24.1	0.0	6e-05	22.6	0.0	1.7	1	1	1	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
Polysacc_synt_2	PF02719.15	gi|529076495|ref|YP_008375498.1|	-	0.07	12.3	0.1	0.13	11.3	0.1	1.5	1	1	0	1	1	1	0	Polysaccharide	biosynthesis	protein
PGM_PMM_I	PF02878.16	gi|529076496|ref|YP_008375499.1|	-	1e-38	132.1	0.0	1.9e-38	131.3	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.16	gi|529076496|ref|YP_008375499.1|	-	5e-25	88.1	0.1	1e-24	87.1	0.1	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_III	PF02880.16	gi|529076496|ref|YP_008375499.1|	-	8e-25	87.3	0.0	1.7e-24	86.2	0.0	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_IV	PF00408.20	gi|529076496|ref|YP_008375499.1|	-	2.8e-16	59.4	0.0	8.5e-16	57.9	0.0	1.8	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
Fe-ADH	PF00465.19	gi|529076496|ref|YP_008375499.1|	-	0.011	14.5	0.0	0.1	11.4	0.0	2.1	2	0	0	2	2	2	0	Iron-containing	alcohol	dehydrogenase
ACT	PF01842.25	gi|529076496|ref|YP_008375499.1|	-	0.029	14.1	0.0	0.12	12.1	0.0	2.1	2	0	0	2	2	2	0	ACT	domain
Fe_dep_repress	PF01325.19	gi|529076497|ref|YP_008375500.1|	-	2.2e-20	72.6	0.0	3.3e-20	72.0	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Fe_dep_repr_C	PF02742.15	gi|529076497|ref|YP_008375500.1|	-	3.5e-18	65.4	0.5	6e-18	64.7	0.5	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
MarR_2	PF12802.7	gi|529076497|ref|YP_008375500.1|	-	3.9e-09	36.3	0.3	8.9e-09	35.1	0.1	1.7	2	0	0	2	2	2	1	MarR	family
HTH_Crp_2	PF13545.6	gi|529076497|ref|YP_008375500.1|	-	6e-06	26.1	0.0	1.1e-05	25.4	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
GntR	PF00392.21	gi|529076497|ref|YP_008375500.1|	-	2.6e-05	23.8	0.0	5.8e-05	22.7	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
MarR	PF01047.22	gi|529076497|ref|YP_008375500.1|	-	3.1e-05	23.8	0.0	5.5e-05	23.0	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|529076497|ref|YP_008375500.1|	-	4.4e-05	23.3	0.0	7.8e-05	22.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|529076497|ref|YP_008375500.1|	-	4.7e-05	23.1	0.0	8.4e-05	22.3	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|529076497|ref|YP_008375500.1|	-	0.00016	21.1	0.0	0.00027	20.4	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.20	gi|529076497|ref|YP_008375500.1|	-	0.00086	19.6	0.0	0.0014	19.0	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_1	PF00126.27	gi|529076497|ref|YP_008375500.1|	-	0.0012	18.7	0.3	0.0037	17.2	0.1	1.9	2	1	0	2	2	2	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_20	PF12840.7	gi|529076497|ref|YP_008375500.1|	-	0.0014	18.6	0.2	0.0047	17.0	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|529076497|ref|YP_008375500.1|	-	0.0027	17.7	0.0	0.0081	16.2	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn	helix
TrmB	PF01978.19	gi|529076497|ref|YP_008375500.1|	-	0.0045	16.8	0.1	0.011	15.6	0.0	1.7	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|529076497|ref|YP_008375500.1|	-	0.026	15.0	0.0	0.045	14.3	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TFIIE_alpha	PF02002.17	gi|529076497|ref|YP_008375500.1|	-	0.026	14.4	0.0	0.046	13.6	0.0	1.3	1	0	0	1	1	1	0	TFIIE	alpha	subunit
Dimerisation2	PF16864.5	gi|529076497|ref|YP_008375500.1|	-	0.04	13.9	0.0	0.065	13.2	0.0	1.2	1	0	0	1	1	1	0	Dimerisation	domain
HTH_23	PF13384.6	gi|529076497|ref|YP_008375500.1|	-	0.056	13.2	0.0	0.15	11.9	0.0	1.7	1	0	0	1	1	1	0	Homeodomain-like	domain
DUF2250	PF10007.9	gi|529076497|ref|YP_008375500.1|	-	0.066	13.3	0.0	0.11	12.6	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_11	PF08279.12	gi|529076497|ref|YP_008375500.1|	-	0.1	12.6	0.0	0.16	11.9	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
HTH_10	PF04967.12	gi|529076497|ref|YP_008375500.1|	-	0.12	12.2	0.0	0.31	10.9	0.0	1.7	1	1	1	2	2	2	0	HTH	DNA	binding	domain
Penicillinase_R	PF03965.16	gi|529076497|ref|YP_008375500.1|	-	0.16	12.3	0.0	0.28	11.5	0.0	1.4	1	0	0	1	1	1	0	Penicillinase	repressor
Meth_synt_1	PF08267.12	gi|529076498|ref|YP_008375501.1|	-	4.4e-13	49.4	0.0	2.8e-12	46.8	0.0	1.9	1	1	1	2	2	2	1	Cobalamin-independent	synthase,	N-terminal	domain
Meth_synt_2	PF01717.18	gi|529076498|ref|YP_008375501.1|	-	5.5e-09	35.7	0.0	2.9e-08	33.4	0.0	1.8	1	1	0	1	1	1	1	Cobalamin-independent	synthase,	Catalytic	domain
Meth_synt_2	PF01717.18	gi|529076499|ref|YP_008375502.1|	-	1.6e-58	198.5	0.0	2.2e-58	198.1	0.0	1.1	1	0	0	1	1	1	1	Cobalamin-independent	synthase,	Catalytic	domain
Meth_synt_1	PF08267.12	gi|529076499|ref|YP_008375502.1|	-	2.4e-13	50.3	0.0	3.5e-13	49.8	0.0	1.2	1	0	0	1	1	1	1	Cobalamin-independent	synthase,	N-terminal	domain
URO-D	PF01208.17	gi|529076499|ref|YP_008375502.1|	-	0.00014	21.1	0.0	0.0002	20.6	0.0	1.3	1	0	0	1	1	1	1	Uroporphyrinogen	decarboxylase	(URO-D)
Corona_6B_7B	PF03262.13	gi|529076499|ref|YP_008375502.1|	-	0.084	12.3	0.0	0.17	11.3	0.0	1.4	1	0	0	1	1	1	0	Coronavirus	6B/7B	protein
NUDIX	PF00293.28	gi|529076500|ref|YP_008375503.1|	-	4.6e-14	52.6	0.3	6.2e-14	52.2	0.3	1.2	1	0	0	1	1	1	1	NUDIX	domain
TFIIB	PF00382.19	gi|529076501|ref|YP_008375504.1|	-	2.2e-39	133.3	0.1	1.1e-18	67.0	0.1	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|529076501|ref|YP_008375504.1|	-	1.9e-18	65.6	4.0	4.2e-18	64.6	4.0	1.6	1	0	0	1	1	1	1	TFIIB	zinc-binding
zf-RRN7	PF11781.8	gi|529076501|ref|YP_008375504.1|	-	0.0022	17.7	2.1	0.0033	17.1	2.1	1.3	1	0	0	1	1	1	1	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
A2L_zn_ribbon	PF08792.10	gi|529076501|ref|YP_008375504.1|	-	0.0022	17.7	0.4	0.0039	16.8	0.4	1.4	1	0	0	1	1	1	1	A2L	zinc	ribbon	domain
Sigma70_r4	PF04545.16	gi|529076501|ref|YP_008375504.1|	-	0.0035	16.8	2.9	0.017	14.7	0.0	3.1	3	0	0	3	3	3	1	Sigma-70,	region	4
Cyclin_C	PF02984.19	gi|529076501|ref|YP_008375504.1|	-	0.021	14.9	0.0	0.32	11.1	0.0	2.1	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
DZR	PF12773.7	gi|529076501|ref|YP_008375504.1|	-	0.024	14.7	0.4	0.041	13.9	0.4	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
DUF1272	PF06906.11	gi|529076501|ref|YP_008375504.1|	-	0.035	14.2	0.5	0.074	13.2	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1272)
zf-ribbon_3	PF13248.6	gi|529076501|ref|YP_008375504.1|	-	0.037	13.5	3.0	0.31	10.5	3.0	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
GFA	PF04828.14	gi|529076501|ref|YP_008375504.1|	-	0.045	14.1	0.2	0.1	13.0	0.2	1.6	1	0	0	1	1	1	0	Glutathione-dependent	formaldehyde-activating	enzyme
OrfB_Zn_ribbon	PF07282.11	gi|529076501|ref|YP_008375504.1|	-	0.081	12.9	1.1	0.17	11.8	1.1	1.6	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Auto_anti-p27	PF06677.12	gi|529076501|ref|YP_008375504.1|	-	0.1	12.7	1.5	0.18	12.0	1.5	1.4	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf_UBZ	PF18439.1	gi|529076501|ref|YP_008375504.1|	-	0.15	11.7	2.1	9.9	5.9	0.1	2.5	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Zn-ribbon_8	PF09723.10	gi|529076501|ref|YP_008375504.1|	-	0.21	11.8	4.9	0.52	10.5	0.7	2.4	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-TFIIB	PF13453.6	gi|529076501|ref|YP_008375504.1|	-	0.25	10.7	1.6	0.32	10.4	0.5	1.7	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
zf-C4_Topoisom	PF01396.19	gi|529076501|ref|YP_008375504.1|	-	0.36	10.6	0.2	0.36	10.6	0.2	1.5	1	1	0	1	1	1	0	Topoisomerase	DNA	binding	C4	zinc	finger
Zn_Tnp_IS1595	PF12760.7	gi|529076501|ref|YP_008375504.1|	-	0.42	10.6	2.1	0.45	10.5	0.2	2.0	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
zinc_ribbon_9	PF14369.6	gi|529076501|ref|YP_008375504.1|	-	1.3	9.3	3.6	0.85	9.9	0.5	2.1	1	1	1	2	2	2	0	zinc-ribbon
Nudix_N_2	PF14803.6	gi|529076501|ref|YP_008375504.1|	-	1.6	8.7	4.2	8.5	6.4	4.0	2.3	1	1	1	2	2	2	0	Nudix	N-terminal
zf-ACC	PF17848.1	gi|529076501|ref|YP_008375504.1|	-	9.1	6.5	5.7	40	4.4	0.7	3.4	3	0	0	3	3	3	0	Acetyl-coA	carboxylase	zinc	finger	domain
Glu-tRNAGln	PF02686.15	gi|529076502|ref|YP_008375505.1|	-	2.6e-16	59.6	1.4	4.5e-16	58.9	1.4	1.3	1	0	0	1	1	1	1	Glu-tRNAGln	amidotransferase	C	subunit
Amidase	PF01425.21	gi|529076503|ref|YP_008375506.1|	-	4.1e-139	464.4	0.4	4.9e-139	464.2	0.4	1.0	1	0	0	1	1	1	1	Amidase
Y_Y_Y	PF07495.13	gi|529076504|ref|YP_008375507.1|	-	0.061	13.3	0.0	0.15	12.0	0.0	1.6	1	1	0	1	1	1	0	Y_Y_Y	domain
DUF5018	PF16410.5	gi|529076504|ref|YP_008375507.1|	-	0.078	11.7	0.2	0.1	11.2	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5018)
DUF4832	PF16116.5	gi|529076504|ref|YP_008375507.1|	-	0.11	12.4	0.0	0.16	11.8	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4832)
MSA-2c	PF12238.8	gi|529076504|ref|YP_008375507.1|	-	7.9	6.4	6.4	3.8	7.4	4.2	1.5	2	0	0	2	2	2	0	Merozoite	surface	antigen	2c
Glycos_transf_1	PF00534.20	gi|529076505|ref|YP_008375508.1|	-	1.3e-27	96.4	0.0	2.1e-26	92.5	0.0	2.0	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|529076505|ref|YP_008375508.1|	-	6.1e-26	91.4	1.1	3.6e-25	88.9	0.4	2.3	3	0	0	3	3	3	1	Glycosyltransferase	Family	4
Glyco_trans_1_4	PF13692.6	gi|529076505|ref|YP_008375508.1|	-	2.4e-20	73.3	0.1	1.5e-18	67.5	0.0	2.5	2	1	1	3	3	3	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|529076505|ref|YP_008375508.1|	-	1.1e-15	58.4	7.7	9.9e-15	55.3	3.1	2.4	2	0	0	2	2	2	2	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|529076505|ref|YP_008375508.1|	-	0.0021	18.4	0.0	0.0049	17.2	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|529076505|ref|YP_008375508.1|	-	0.042	13.9	0.0	0.17	11.9	0.0	1.9	2	0	0	2	2	2	0	Glycosyl	transferase	4-like
Rpr2	PF04032.16	gi|529076506|ref|YP_008375509.1|	-	1.5e-10	41.2	0.0	1.8e-10	40.9	0.0	1.1	1	0	0	1	1	1	1	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
CRS1_YhbY	PF01985.21	gi|529076507|ref|YP_008375510.1|	-	6.1e-12	45.5	0.0	6.9e-12	45.4	0.0	1.0	1	0	0	1	1	1	1	CRS1	/	YhbY	(CRM)	domain
MS_channel	PF00924.18	gi|529076508|ref|YP_008375511.1|	-	9.3e-55	185.4	0.2	1.1e-54	185.1	0.2	1.1	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
Acyl_transf_3	PF01757.22	gi|529076509|ref|YP_008375512.1|	-	0.023	13.8	8.3	0.025	13.6	8.3	1.0	1	0	0	1	1	1	0	Acyltransferase	family
MatE	PF01554.18	gi|529076509|ref|YP_008375512.1|	-	0.067	12.8	8.1	0.044	13.4	3.6	2.1	1	1	1	2	2	2	0	MatE
DUF883	PF05957.13	gi|529076509|ref|YP_008375512.1|	-	0.17	12.5	0.5	0.17	12.5	0.5	1.8	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
DivIVA	PF05103.13	gi|529076510|ref|YP_008375513.1|	-	0.0012	18.9	4.3	0.0015	18.6	4.3	1.1	1	0	0	1	1	1	1	DivIVA	protein
TPR_MLP1_2	PF07926.12	gi|529076510|ref|YP_008375513.1|	-	0.0021	18.1	3.1	0.0034	17.4	3.1	1.3	1	0	0	1	1	1	1	TPR/MLP1/MLP2-like	protein
YscO-like	PF16789.5	gi|529076510|ref|YP_008375513.1|	-	0.0025	17.8	1.2	0.0032	17.5	1.2	1.1	1	0	0	1	1	1	1	YscO-like	protein
RmuC	PF02646.16	gi|529076510|ref|YP_008375513.1|	-	0.0034	16.5	0.8	0.0045	16.2	0.8	1.1	1	0	0	1	1	1	1	RmuC	family
DUF3450	PF11932.8	gi|529076510|ref|YP_008375513.1|	-	0.0043	16.4	1.6	0.0053	16.1	1.6	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3450)
DUF745	PF05335.13	gi|529076510|ref|YP_008375513.1|	-	0.0045	16.7	1.9	0.0056	16.4	1.9	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF745)
T4SS	PF07996.11	gi|529076510|ref|YP_008375513.1|	-	0.0048	17.3	1.0	0.088	13.2	0.2	2.0	1	1	1	2	2	2	1	Type	IV	secretion	system	proteins
GOLGA2L5	PF15070.6	gi|529076510|ref|YP_008375513.1|	-	0.0049	15.6	1.4	0.0054	15.5	1.4	1.1	1	0	0	1	1	1	1	Putative	golgin	subfamily	A	member	2-like	protein	5
TBK1_CCD1	PF18394.1	gi|529076510|ref|YP_008375513.1|	-	0.0054	16.3	0.1	0.0072	15.9	0.1	1.1	1	0	0	1	1	1	1	TANK-binding	kinase	1	coiled-coil	domain	1
LPP	PF04728.13	gi|529076510|ref|YP_008375513.1|	-	0.0054	17.1	0.8	0.0054	17.1	0.8	1.9	2	1	1	3	3	1	1	Lipoprotein	leucine-zipper
HOOK	PF05622.12	gi|529076510|ref|YP_008375513.1|	-	0.006	14.8	1.2	0.006	14.8	1.2	1.0	1	0	0	1	1	1	1	HOOK	protein
DUF948	PF06103.11	gi|529076510|ref|YP_008375513.1|	-	0.006	16.8	0.9	0.0076	16.5	0.9	1.3	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF948)
Ax_dynein_light	PF10211.9	gi|529076510|ref|YP_008375513.1|	-	0.0081	16.1	1.1	0.01	15.8	1.1	1.1	1	0	0	1	1	1	1	Axonemal	dynein	light	chain
TolA_bind_tri	PF16331.5	gi|529076510|ref|YP_008375513.1|	-	0.0083	16.2	3.6	0.013	15.5	3.6	1.4	1	0	0	1	1	1	1	TolA	binding	protein	trimerisation
YabA	PF06156.13	gi|529076510|ref|YP_008375513.1|	-	0.0085	16.7	0.2	0.0095	16.6	0.2	1.3	1	0	0	1	1	1	1	Initiation	control	protein	YabA
BLOC1_2	PF10046.9	gi|529076510|ref|YP_008375513.1|	-	0.0089	16.3	1.0	0.013	15.8	1.0	1.3	1	0	0	1	1	1	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
EzrA	PF06160.12	gi|529076510|ref|YP_008375513.1|	-	0.0096	14.2	1.7	0.012	13.9	1.7	1.1	1	0	0	1	1	1	1	Septation	ring	formation	regulator,	EzrA
Atg14	PF10186.9	gi|529076510|ref|YP_008375513.1|	-	0.011	14.9	0.1	0.011	14.9	0.1	1.0	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Spc7	PF08317.11	gi|529076510|ref|YP_008375513.1|	-	0.011	14.7	3.6	0.013	14.4	3.6	1.1	1	0	0	1	1	1	0	Spc7	kinetochore	protein
Med9	PF07544.13	gi|529076510|ref|YP_008375513.1|	-	0.014	15.5	2.7	0.022	14.8	1.9	1.7	1	1	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
ATG16	PF08614.11	gi|529076510|ref|YP_008375513.1|	-	0.014	15.6	3.5	0.018	15.3	3.5	1.2	1	0	0	1	1	1	0	Autophagy	protein	16	(ATG16)
DUF3782	PF12644.7	gi|529076510|ref|YP_008375513.1|	-	0.017	15.2	0.5	0.03	14.4	0.1	1.6	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF3782)
TMCO5	PF14992.6	gi|529076510|ref|YP_008375513.1|	-	0.02	14.5	3.8	0.028	14.0	3.3	1.4	1	1	1	2	2	2	0	TMCO5	family
NBD94	PF16830.5	gi|529076510|ref|YP_008375513.1|	-	0.02	15.3	0.1	0.025	15.0	0.1	1.2	1	0	0	1	1	1	0	Nucleotide-Binding	Domain	94	of	RH
Herpes_UL6	PF01763.16	gi|529076510|ref|YP_008375513.1|	-	0.022	13.3	0.6	0.024	13.2	0.6	1.0	1	0	0	1	1	1	0	Herpesvirus	UL6	like
AAA_13	PF13166.6	gi|529076510|ref|YP_008375513.1|	-	0.029	13.0	1.3	0.034	12.8	1.3	1.0	1	0	0	1	1	1	0	AAA	domain
DUF1073	PF06381.11	gi|529076510|ref|YP_008375513.1|	-	0.029	13.2	0.4	0.034	13.0	0.4	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1073)
DUF16	PF01519.16	gi|529076510|ref|YP_008375513.1|	-	0.032	14.7	1.6	0.044	14.3	1.6	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF16
DegS	PF05384.11	gi|529076510|ref|YP_008375513.1|	-	0.032	13.7	2.1	0.038	13.5	2.1	1.1	1	0	0	1	1	1	0	Sensor	protein	DegS
FlaC_arch	PF05377.11	gi|529076510|ref|YP_008375513.1|	-	0.032	14.6	1.0	0.055	13.9	1.0	1.5	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
DUF1664	PF07889.12	gi|529076510|ref|YP_008375513.1|	-	0.032	14.3	0.5	0.044	13.8	0.5	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
NPV_P10	PF05531.12	gi|529076510|ref|YP_008375513.1|	-	0.038	14.5	2.4	0.058	13.9	2.4	1.4	1	1	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
Hemagglutinin	PF00509.18	gi|529076510|ref|YP_008375513.1|	-	0.039	12.4	1.0	0.048	12.1	1.0	1.0	1	0	0	1	1	1	0	Haemagglutinin
Bacillus_HBL	PF05791.11	gi|529076510|ref|YP_008375513.1|	-	0.045	13.6	0.5	0.05	13.4	0.5	1.1	1	0	0	1	1	1	0	Bacillus	haemolytic	enterotoxin	(HBL)
eIF3_N	PF09440.10	gi|529076510|ref|YP_008375513.1|	-	0.051	14.0	1.0	0.069	13.6	1.0	1.2	1	0	0	1	1	1	0	eIF3	subunit	6	N	terminal	domain
Med4	PF10018.9	gi|529076510|ref|YP_008375513.1|	-	0.051	13.3	1.2	0.062	13.0	1.2	1.3	1	0	0	1	1	1	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
End3	PF12761.7	gi|529076510|ref|YP_008375513.1|	-	0.052	13.7	1.6	0.076	13.2	1.6	1.3	1	0	0	1	1	1	0	Actin	cytoskeleton-regulatory	complex	protein	END3
IFT57	PF10498.9	gi|529076510|ref|YP_008375513.1|	-	0.059	12.3	3.6	0.03	13.3	2.1	1.3	1	1	0	1	1	1	0	Intra-flagellar	transport	protein	57
COG2	PF06148.11	gi|529076510|ref|YP_008375513.1|	-	0.063	13.4	1.6	0.079	13.0	1.6	1.2	1	0	0	1	1	1	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
AATF-Che1	PF13339.6	gi|529076510|ref|YP_008375513.1|	-	0.069	13.8	0.2	0.084	13.5	0.2	1.1	1	0	0	1	1	1	0	Apoptosis	antagonizing	transcription	factor
Seryl_tRNA_N	PF02403.22	gi|529076510|ref|YP_008375513.1|	-	0.075	13.3	1.5	0.12	12.7	1.5	1.4	1	0	0	1	1	1	0	Seryl-tRNA	synthetase	N-terminal	domain
UPF0242	PF06785.11	gi|529076510|ref|YP_008375513.1|	-	0.084	13.0	1.3	0.1	12.7	1.3	1.1	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Sec34	PF04136.15	gi|529076510|ref|YP_008375513.1|	-	0.089	12.7	0.5	0.11	12.4	0.5	1.1	1	0	0	1	1	1	0	Sec34-like	family
TMPIT	PF07851.13	gi|529076510|ref|YP_008375513.1|	-	0.094	11.9	0.2	0.11	11.7	0.2	1.0	1	0	0	1	1	1	0	TMPIT-like	protein
DASH_Hsk3	PF08227.11	gi|529076510|ref|YP_008375513.1|	-	0.099	13.0	0.6	0.19	12.1	0.2	1.7	1	1	0	1	1	1	0	DASH	complex	subunit	Hsk3	like
zf-C4H2	PF10146.9	gi|529076510|ref|YP_008375513.1|	-	0.1	12.9	0.3	0.11	12.7	0.3	1.1	1	0	0	1	1	1	0	Zinc	finger-containing	protein
DNA_pol_A_exoN	PF18305.1	gi|529076510|ref|YP_008375513.1|	-	0.11	12.8	0.3	0.77	10.1	0.1	2.0	1	1	1	2	2	2	0	3'	to	5'	exonuclease	C-terminal	domain
APG6_N	PF17675.1	gi|529076510|ref|YP_008375513.1|	-	0.13	12.7	4.9	0.2	12.2	4.9	1.3	1	0	0	1	1	1	0	Apg6	coiled-coil	region
Prominin	PF05478.11	gi|529076510|ref|YP_008375513.1|	-	0.15	10.0	0.1	0.15	10.0	0.1	1.1	1	0	0	1	1	1	0	Prominin
Lge1	PF11488.8	gi|529076510|ref|YP_008375513.1|	-	0.18	12.0	2.4	0.4	10.9	2.3	1.7	1	1	1	2	2	2	0	Transcriptional	regulatory	protein	LGE1
Spc24	PF08286.11	gi|529076510|ref|YP_008375513.1|	-	0.23	11.7	4.1	0.32	11.3	4.1	1.3	1	1	0	1	1	1	0	Spc24	subunit	of	Ndc80
SlyX	PF04102.12	gi|529076510|ref|YP_008375513.1|	-	1.3	9.7	6.9	9.2	7.0	1.6	2.4	1	1	1	2	2	2	0	SlyX
CoA_binding_2	PF13380.6	gi|529076511|ref|YP_008375514.1|	-	1.3e-35	122.4	0.0	1.5e-35	122.2	0.0	1.0	1	0	0	1	1	1	1	CoA	binding	domain
CoA_binding	PF02629.19	gi|529076511|ref|YP_008375514.1|	-	0.0008	20.1	0.0	0.0011	19.5	0.0	1.3	1	0	0	1	1	1	1	CoA	binding	domain
Coagulin	PF02035.15	gi|529076513|ref|YP_008375516.1|	-	0.098	12.5	0.0	0.098	12.5	0.0	1.0	1	0	0	1	1	1	0	Coagulin
AAA_19	PF13245.6	gi|529076514|ref|YP_008375517.1|	-	2.1e-11	44.3	0.0	8.4e-11	42.4	0.0	2.0	2	1	0	2	2	2	1	AAA	domain
UvrD_C	PF13361.6	gi|529076514|ref|YP_008375517.1|	-	2.8e-05	23.7	0.0	4.3e-05	23.0	0.0	1.1	1	0	0	1	1	1	1	UvrD-like	helicase	C-terminal	domain
UvrD-helicase	PF00580.21	gi|529076514|ref|YP_008375517.1|	-	9e-05	22.1	0.0	0.065	12.8	0.0	2.2	2	0	0	2	2	2	2	UvrD/REP	helicase	N-terminal	domain
UvrD_C_2	PF13538.6	gi|529076514|ref|YP_008375517.1|	-	0.00045	20.0	0.9	0.0019	18.0	0.9	2.1	1	1	0	1	1	1	1	UvrD-like	helicase	C-terminal	domain
AAA_25	PF13481.6	gi|529076514|ref|YP_008375517.1|	-	0.00049	19.7	2.4	0.27	10.8	0.0	3.7	4	0	0	4	4	4	2	AAA	domain
AAA_30	PF13604.6	gi|529076514|ref|YP_008375517.1|	-	0.0013	18.5	0.0	1.3	8.7	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
Viral_helicase1	PF01443.18	gi|529076514|ref|YP_008375517.1|	-	0.0035	17.1	0.1	0.32	10.7	0.0	3.0	3	0	0	3	3	3	1	Viral	(Superfamily	1)	RNA	helicase
AAA_16	PF13191.6	gi|529076514|ref|YP_008375517.1|	-	0.074	13.4	0.2	0.37	11.1	0.1	2.4	2	1	0	2	2	2	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|529076514|ref|YP_008375517.1|	-	0.12	12.7	0.0	2	8.7	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
Ta0938	PF11494.8	gi|529076515|ref|YP_008375518.1|	-	0.16	12.2	0.3	0.39	11.0	0.2	1.7	2	0	0	2	2	2	0	Ta0938
HTH_20	PF12840.7	gi|529076516|ref|YP_008375519.1|	-	0.021	14.9	0.0	0.055	13.5	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|529076516|ref|YP_008375519.1|	-	0.025	14.4	0.0	0.045	13.6	0.0	1.4	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_43	PF09904.9	gi|529076516|ref|YP_008375519.1|	-	0.034	14.1	0.0	0.13	12.2	0.0	1.9	2	0	0	2	2	2	0	Winged	helix-turn	helix
DUF4439	PF14530.6	gi|529076516|ref|YP_008375519.1|	-	0.16	12.6	1.0	0.58	10.9	0.1	2.2	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4439)
IMS_HHH	PF11798.8	gi|529076517|ref|YP_008375520.1|	-	0.036	14.4	0.0	0.15	12.4	0.0	2.1	2	0	0	2	2	2	0	IMS	family	HHH	motif
YflT	PF11181.8	gi|529076518|ref|YP_008375521.1|	-	0.14	12.7	0.7	2.9	8.5	0.1	2.3	2	0	0	2	2	2	0	Heat	induced	stress	protein	YflT
CBM_48	PF02922.18	gi|529076518|ref|YP_008375521.1|	-	0.15	12.4	0.8	0.29	11.5	0.0	1.8	2	0	0	2	2	2	0	Carbohydrate-binding	module	48	(Isoamylase	N-terminal	domain)
TFIIB	PF00382.19	gi|529076519|ref|YP_008375522.1|	-	2e-26	91.8	0.3	6.4e-15	55.0	0.0	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|529076519|ref|YP_008375522.1|	-	4.2e-07	29.4	0.2	8.4e-07	28.4	0.2	1.6	1	0	0	1	1	1	1	TFIIB	zinc-binding
TFIIB_C_1	PF18542.1	gi|529076519|ref|YP_008375522.1|	-	0.029	14.4	0.4	0.097	12.7	0.2	2.0	1	1	1	2	2	2	0	Transcription	factor	IIB	C-terminal	module	1
IMS_HHH	PF11798.8	gi|529076520|ref|YP_008375523.1|	-	0.059	13.7	0.0	0.14	12.6	0.0	1.6	1	0	0	1	1	1	0	IMS	family	HHH	motif
MgtE_N	PF03448.17	gi|529076520|ref|YP_008375523.1|	-	0.18	12.4	2.1	0.39	11.4	0.6	2.3	2	0	0	2	2	2	0	MgtE	intracellular	N	domain
N6_Mtase	PF02384.16	gi|529076522|ref|YP_008375525.1|	-	9.2e-18	64.6	0.0	5.5e-17	62.0	0.0	2.2	1	1	0	1	1	1	1	N-6	DNA	Methylase
TaqI_C	PF12950.7	gi|529076522|ref|YP_008375525.1|	-	8.6e-10	38.7	0.0	3.2e-09	36.9	0.0	2.0	2	0	0	2	2	2	1	TaqI-like	C-terminal	specificity	domain
UPF0020	PF01170.18	gi|529076522|ref|YP_008375525.1|	-	4.6e-07	29.7	0.0	9e-05	22.2	0.0	2.5	1	1	1	2	2	2	2	Putative	RNA	methylase	family	UPF0020
Eco57I	PF07669.11	gi|529076522|ref|YP_008375525.1|	-	2.5e-05	24.7	0.1	0.00015	22.2	0.0	2.3	4	0	0	4	4	4	1	Eco57I	restriction-modification	methylase
Methyltransf_31	PF13847.6	gi|529076522|ref|YP_008375525.1|	-	0.0026	17.6	0.0	0.019	14.8	0.0	2.3	1	1	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|529076522|ref|YP_008375525.1|	-	0.011	15.3	0.0	7.4	6.1	0.0	3.5	3	1	0	3	3	3	0	Methyltransferase	small	domain
PrmA	PF06325.13	gi|529076522|ref|YP_008375525.1|	-	0.088	12.2	0.0	5.4	6.3	0.0	2.5	2	0	0	2	2	2	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
DASH_Spc19	PF08287.11	gi|529076522|ref|YP_008375525.1|	-	0.32	10.9	3.0	1.2	9.0	0.2	2.5	2	0	0	2	2	2	0	Spc19
TBP	PF00352.21	gi|529076523|ref|YP_008375526.1|	-	2.9e-30	104.0	0.0	2.2e-19	69.2	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.8	gi|529076523|ref|YP_008375526.1|	-	0.22	11.6	0.0	0.54	10.4	0.0	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3378)
SnoaL_2	PF12680.7	gi|529076526|ref|YP_008375529.1|	-	0.033	14.8	0.3	0.075	13.7	0.2	1.6	1	1	1	2	2	2	0	SnoaL-like	domain
SnoaL	PF07366.12	gi|529076526|ref|YP_008375529.1|	-	0.11	12.2	0.1	0.19	11.5	0.1	1.5	1	1	0	1	1	1	0	SnoaL-like	polyketide	cyclase
EFG_IV	PF03764.18	gi|529076527|ref|YP_008375530.1|	-	0.091	12.5	0.0	0.094	12.5	0.0	1.1	1	0	0	1	1	1	0	Elongation	factor	G,	domain	IV
FliMN_C	PF01052.20	gi|529076528|ref|YP_008375531.1|	-	0.024	14.6	0.1	0.036	14.1	0.1	1.4	1	1	0	1	1	1	0	Type	III	flagellar	switch	regulator	(C-ring)	FliN	C-term
CLN5	PF15014.6	gi|529076528|ref|YP_008375531.1|	-	0.14	11.8	0.0	0.15	11.7	0.0	1.1	1	0	0	1	1	1	0	Ceroid-lipofuscinosis	neuronal	protein	5
HTH_IclR	PF09339.10	gi|529076529|ref|YP_008375532.1|	-	0.00035	20.3	0.0	0.00071	19.3	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Resolvase	PF00239.21	gi|529076529|ref|YP_008375532.1|	-	0.00072	19.7	1.5	0.0045	17.1	1.0	2.4	2	1	0	2	2	2	1	Resolvase,	N	terminal	domain
Imm7	PF15585.6	gi|529076529|ref|YP_008375532.1|	-	0.027	14.8	0.5	0.091	13.1	0.1	2.0	1	1	1	2	2	2	0	Immunity	protein	7
HTH_38	PF13936.6	gi|529076529|ref|YP_008375532.1|	-	0.084	12.6	0.1	0.19	11.5	0.1	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|529076529|ref|YP_008375532.1|	-	0.12	12.3	0.0	0.57	10.1	0.0	2.1	2	0	0	2	2	2	0	MarR	family
Sigma70_r4_2	PF08281.12	gi|529076531|ref|YP_008375534.1|	-	1.9e-05	24.2	0.1	3.7e-05	23.3	0.1	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
GerE	PF00196.19	gi|529076531|ref|YP_008375534.1|	-	0.014	15.0	0.1	0.022	14.3	0.1	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4	PF04545.16	gi|529076531|ref|YP_008375534.1|	-	0.039	13.5	0.1	0.067	12.7	0.1	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_35	PF13693.6	gi|529076531|ref|YP_008375534.1|	-	0.047	13.7	0.0	0.12	12.4	0.0	1.6	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
IcmF-related	PF06761.12	gi|529076531|ref|YP_008375534.1|	-	0.1	12.0	2.7	0.18	11.3	0.2	2.1	2	1	1	3	3	3	0	Intracellular	multiplication	and	human	macrophage-killing
MAAL_N	PF05034.13	gi|529076533|ref|YP_008375536.1|	-	0.1	12.2	0.0	0.11	12.1	0.0	1.1	1	0	0	1	1	1	0	Methylaspartate	ammonia-lyase	N-terminus
HTH_Tnp_ISL3	PF13542.6	gi|529076536|ref|YP_008375539.1|	-	0.02	14.3	0.0	0.038	13.4	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_50	PF18024.1	gi|529076537|ref|YP_008375540.1|	-	0.00098	18.7	0.0	0.002	17.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
NUMOD1	PF07453.13	gi|529076537|ref|YP_008375540.1|	-	0.0071	16.6	0.1	0.016	15.4	0.1	1.6	2	0	0	2	2	2	1	NUMOD1	domain
HTH_23	PF13384.6	gi|529076537|ref|YP_008375540.1|	-	0.01	15.6	0.1	0.018	14.8	0.1	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_29	PF13551.6	gi|529076537|ref|YP_008375540.1|	-	0.028	14.4	0.1	0.053	13.6	0.1	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
LAL_C2	PF18603.1	gi|529076538|ref|YP_008375541.1|	-	0.082	13.1	0.3	0.18	12.0	0.3	1.5	1	0	0	1	1	1	0	L-amino	acid	ligase	C-terminal	domain	2
HEPN_Apea	PF18739.1	gi|529076539|ref|YP_008375542.1|	-	0.02	15.3	0.0	0.049	14.1	0.0	1.6	1	0	0	1	1	1	0	Apea-like	HEPN
MttA_Hcf106	PF02416.16	gi|529076540|ref|YP_008375543.1|	-	1.5e-13	49.8	0.1	1.8e-13	49.6	0.1	1.1	1	0	0	1	1	1	1	mttA/Hcf106	family
ResIII	PF04851.15	gi|529076542|ref|YP_008375545.1|	-	0.09	12.8	0.0	0.18	11.8	0.0	1.4	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
PepSY_2	PF13670.6	gi|529076543|ref|YP_008375546.1|	-	0.00015	21.7	0.9	0.00043	20.2	0.9	1.7	1	0	0	1	1	1	1	Peptidase	propeptide	and	YPEB	domain
Glug	PF07581.12	gi|529076544|ref|YP_008375547.1|	-	1.1e-06	28.7	74.5	0.088	13.3	7.1	11.6	12	0	0	12	12	12	7	The	GLUG	motif
Ribosomal_L37ae	PF01780.19	gi|529076546|ref|YP_008375549.1|	-	0.005	16.9	0.3	0.0052	16.8	0.3	1.1	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
Stn1	PF10451.9	gi|529076547|ref|YP_008375550.1|	-	0.15	11.0	0.0	0.16	10.9	0.0	1.0	1	0	0	1	1	1	0	Telomere	regulation	protein	Stn1
Apocytochr_F_N	PF16639.5	gi|529076547|ref|YP_008375550.1|	-	0.19	12.0	0.0	0.19	12.0	0.0	1.0	1	0	0	1	1	1	0	Apocytochrome	F,	N-terminal
Phage_integrase	PF00589.22	gi|529076548|ref|YP_008375551.1|	-	1.7e-06	28.0	0.0	9.6e-06	25.5	0.0	2.0	1	1	0	1	1	1	1	Phage	integrase	family
HTH_38	PF13936.6	gi|529076548|ref|YP_008375551.1|	-	0.078	12.8	0.0	0.3	10.9	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
Phage_int_SAM_4	PF13495.6	gi|529076548|ref|YP_008375551.1|	-	0.091	13.2	0.0	0.35	11.4	0.0	1.9	1	1	0	1	1	1	0	Phage	integrase,	N-terminal	SAM-like	domain
MCRA	PF06100.11	gi|529076549|ref|YP_008375552.1|	-	9.6e-215	714.1	0.0	1.1e-214	713.9	0.0	1.0	1	0	0	1	1	1	1	MCRA	family
NAD_binding_8	PF13450.6	gi|529076549|ref|YP_008375552.1|	-	2.6e-06	27.5	0.2	5e-06	26.6	0.2	1.5	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|529076549|ref|YP_008375552.1|	-	6.7e-05	22.6	0.0	0.00024	20.8	0.0	1.8	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|529076549|ref|YP_008375552.1|	-	0.55	9.4	2.2	0.88	8.7	0.0	2.0	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
HTH_10	PF04967.12	gi|529076550|ref|YP_008375553.1|	-	7.1e-17	61.0	0.1	9.1e-17	60.6	0.1	1.2	1	0	0	1	1	1	1	HTH	DNA	binding	domain
MarR_2	PF12802.7	gi|529076550|ref|YP_008375553.1|	-	0.0043	16.9	0.2	0.0062	16.4	0.2	1.4	1	0	0	1	1	1	1	MarR	family
Sigma70_r3	PF04539.16	gi|529076550|ref|YP_008375553.1|	-	0.0059	16.7	0.1	0.0074	16.4	0.1	1.2	1	0	0	1	1	1	1	Sigma-70	region	3
Sigma70_r4	PF04545.16	gi|529076550|ref|YP_008375553.1|	-	0.021	14.3	0.1	0.04	13.4	0.1	1.5	1	1	0	1	1	1	0	Sigma-70,	region	4
HRDC	PF00570.23	gi|529076550|ref|YP_008375553.1|	-	0.11	12.5	0.0	0.15	12.1	0.0	1.2	1	0	0	1	1	1	0	HRDC	domain
HTH_AraC	PF00165.23	gi|529076550|ref|YP_008375553.1|	-	0.12	12.5	0.3	6.6	7.0	0.0	3.0	4	0	0	4	4	4	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
AAA_26	PF13500.6	gi|529076551|ref|YP_008375554.1|	-	0.037	13.8	0.1	0.073	12.9	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
HxlR	PF01638.17	gi|529076554|ref|YP_008375557.1|	-	3.6e-19	68.4	0.0	3.7e-19	68.4	0.0	1.0	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
PadR	PF03551.14	gi|529076554|ref|YP_008375557.1|	-	9.8e-05	22.2	0.0	0.00014	21.8	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
MarR_2	PF12802.7	gi|529076554|ref|YP_008375557.1|	-	0.00033	20.5	0.0	0.00051	19.9	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_34	PF13601.6	gi|529076554|ref|YP_008375557.1|	-	0.00052	20.1	0.0	0.00065	19.8	0.0	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|529076554|ref|YP_008375557.1|	-	0.0027	17.6	0.0	0.0035	17.2	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|529076554|ref|YP_008375557.1|	-	0.032	14.3	0.1	0.046	13.8	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
FUR	PF01475.19	gi|529076554|ref|YP_008375557.1|	-	0.097	12.8	0.0	0.11	12.7	0.0	1.1	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
Pyr_redox_2	PF07992.14	gi|529076555|ref|YP_008375558.1|	-	7.4e-59	199.4	2.7	1.1e-58	198.8	2.7	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|529076555|ref|YP_008375558.1|	-	1.5e-31	108.9	0.7	3.3e-31	107.8	0.7	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|529076555|ref|YP_008375558.1|	-	1.1e-17	64.3	4.3	1.2e-17	64.2	0.5	2.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|529076555|ref|YP_008375558.1|	-	7.4e-07	28.7	2.5	9.6e-07	28.3	0.1	2.0	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|529076555|ref|YP_008375558.1|	-	9.4e-05	21.7	0.0	0.012	14.7	0.0	2.3	1	1	1	2	2	2	2	L-lysine	6-monooxygenase	(NADPH-requiring)
FAD_oxidored	PF12831.7	gi|529076555|ref|YP_008375558.1|	-	0.00012	21.6	0.7	0.00012	21.6	0.7	2.0	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
3HCDH_N	PF02737.18	gi|529076555|ref|YP_008375558.1|	-	0.0011	18.9	0.5	0.0027	17.6	0.5	1.6	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
FAD_binding_2	PF00890.24	gi|529076555|ref|YP_008375558.1|	-	0.0049	16.0	7.2	0.033	13.3	3.7	2.4	2	1	0	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|529076555|ref|YP_008375558.1|	-	0.0081	16.4	2.9	2	8.7	0.1	2.5	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
AlaDh_PNT_C	PF01262.21	gi|529076555|ref|YP_008375558.1|	-	0.018	14.4	2.3	1.5	8.1	0.1	2.4	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
GIDA	PF01134.22	gi|529076555|ref|YP_008375558.1|	-	0.032	13.3	8.5	0.015	14.5	4.1	2.7	3	1	0	3	3	3	0	Glucose	inhibited	division	protein	A
Nucleoporin_N	PF08801.11	gi|529076556|ref|YP_008375559.1|	-	0.056	12.2	0.0	0.062	12.0	0.0	1.0	1	0	0	1	1	1	0	Nup133	N	terminal	like
Alk_phosphatase	PF00245.20	gi|529076556|ref|YP_008375559.1|	-	0.072	12.0	0.0	0.084	11.8	0.0	1.0	1	0	0	1	1	1	0	Alkaline	phosphatase
AP_endonuc_2	PF01261.24	gi|529076557|ref|YP_008375560.1|	-	4.6e-27	94.8	1.2	5.8e-27	94.5	1.2	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
Amidohydro_3	PF07969.11	gi|529076558|ref|YP_008375561.1|	-	3.7e-13	49.8	8.9	4.1e-08	33.1	2.0	3.4	1	1	1	3	3	3	2	Amidohydrolase	family
Amidohydro_1	PF01979.20	gi|529076558|ref|YP_008375561.1|	-	3.4e-05	23.3	7.3	0.0017	17.8	0.0	3.0	2	1	0	3	3	3	2	Amidohydrolase	family
TetR_C_31	PF17940.1	gi|529076558|ref|YP_008375561.1|	-	0.023	14.9	0.2	0.1	12.8	0.1	2.2	2	0	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
ABC_tran	PF00005.27	gi|529076559|ref|YP_008375562.1|	-	1.2e-29	103.5	0.0	1.7e-29	103.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529076559|ref|YP_008375562.1|	-	7.1e-09	35.9	0.1	0.00068	19.5	0.1	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|529076559|ref|YP_008375562.1|	-	1.7e-07	31.8	0.9	5e-07	30.3	0.9	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
SMC_N	PF02463.19	gi|529076559|ref|YP_008375562.1|	-	6.1e-07	29.1	0.1	0.00022	20.7	0.1	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|529076559|ref|YP_008375562.1|	-	0.00017	21.9	0.4	0.0033	17.7	0.4	2.4	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|529076559|ref|YP_008375562.1|	-	0.00035	20.5	0.0	0.00057	19.8	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
SbcCD_C	PF13558.6	gi|529076559|ref|YP_008375562.1|	-	0.0021	18.3	0.5	0.015	15.5	0.5	2.2	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_30	PF13604.6	gi|529076559|ref|YP_008375562.1|	-	0.0023	17.7	0.0	0.01	15.6	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|529076559|ref|YP_008375562.1|	-	0.0024	17.5	0.0	0.0047	16.6	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ATPase_2	PF01637.18	gi|529076559|ref|YP_008375562.1|	-	0.028	14.3	0.0	0.081	12.8	0.0	1.7	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
AAA_23	PF13476.6	gi|529076559|ref|YP_008375562.1|	-	0.028	14.9	0.0	0.04	14.4	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_14	PF13173.6	gi|529076559|ref|YP_008375562.1|	-	0.029	14.4	0.0	0.072	13.1	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.17	gi|529076559|ref|YP_008375562.1|	-	0.035	13.9	0.1	2.1	8.0	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
KdpD	PF02702.17	gi|529076559|ref|YP_008375562.1|	-	0.04	13.4	0.1	0.067	12.7	0.1	1.4	1	0	0	1	1	1	0	Osmosensitive	K+	channel	His	kinase	sensor	domain
AAA_15	PF13175.6	gi|529076559|ref|YP_008375562.1|	-	0.04	13.6	0.0	0.2	11.3	0.0	1.8	2	0	0	2	2	2	0	AAA	ATPase	domain
Sigma54_activat	PF00158.26	gi|529076559|ref|YP_008375562.1|	-	0.051	13.3	0.0	0.19	11.4	0.0	1.8	2	0	0	2	2	2	0	Sigma-54	interaction	domain
MMR_HSR1	PF01926.23	gi|529076559|ref|YP_008375562.1|	-	0.055	13.5	0.1	0.13	12.4	0.0	1.7	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
NACHT	PF05729.12	gi|529076559|ref|YP_008375562.1|	-	0.064	13.2	0.0	0.15	12.0	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
AAA_19	PF13245.6	gi|529076559|ref|YP_008375562.1|	-	0.069	13.5	0.0	0.2	12.0	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
Gtr1_RagA	PF04670.12	gi|529076559|ref|YP_008375562.1|	-	0.084	12.2	0.0	0.14	11.5	0.0	1.3	1	0	0	1	1	1	0	Gtr1/RagA	G	protein	conserved	region
DUF815	PF05673.13	gi|529076559|ref|YP_008375562.1|	-	0.097	11.8	2.6	0.45	9.6	0.1	2.4	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF815)
NB-ARC	PF00931.22	gi|529076559|ref|YP_008375562.1|	-	0.1	11.7	0.0	0.23	10.6	0.0	1.5	2	0	0	2	2	2	0	NB-ARC	domain
FAD_binding_4	PF01565.23	gi|529076559|ref|YP_008375562.1|	-	0.11	12.3	0.2	0.17	11.6	0.2	1.4	1	0	0	1	1	1	0	FAD	binding	domain
Dynamin_N	PF00350.23	gi|529076559|ref|YP_008375562.1|	-	0.12	12.4	0.1	0.28	11.2	0.1	1.6	1	0	0	1	1	1	0	Dynamin	family
ABC_tran	PF00005.27	gi|529076560|ref|YP_008375563.1|	-	9.1e-26	91.0	0.0	1.2e-25	90.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529076560|ref|YP_008375563.1|	-	1.6e-07	31.5	0.0	8.9e-05	22.4	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|529076560|ref|YP_008375563.1|	-	4.4e-06	27.0	0.3	0.00014	22.1	0.3	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|529076560|ref|YP_008375563.1|	-	3.8e-05	23.9	0.1	0.0003	20.9	0.1	2.2	1	1	0	1	1	1	1	AAA	domain
oligo_HPY	PF08352.12	gi|529076560|ref|YP_008375563.1|	-	0.00047	20.6	0.0	0.0015	19.0	0.0	1.9	2	0	0	2	2	2	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_16	PF13191.6	gi|529076560|ref|YP_008375563.1|	-	0.00069	20.0	0.2	0.0011	19.4	0.1	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_25	PF13481.6	gi|529076560|ref|YP_008375563.1|	-	0.0018	17.9	2.0	0.04	13.5	2.0	2.2	1	1	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|529076560|ref|YP_008375563.1|	-	0.0039	16.9	0.1	0.1	12.3	0.0	2.2	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
SMC_N	PF02463.19	gi|529076560|ref|YP_008375563.1|	-	0.0074	15.7	0.0	1.9	7.9	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|529076560|ref|YP_008375563.1|	-	0.032	14.0	0.0	0.065	13.0	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
SbcCD_C	PF13558.6	gi|529076560|ref|YP_008375563.1|	-	0.039	14.2	0.0	0.22	11.8	0.0	2.1	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
RsgA_GTPase	PF03193.16	gi|529076560|ref|YP_008375563.1|	-	0.047	13.6	0.1	0.11	12.3	0.0	1.7	2	0	0	2	2	2	0	RsgA	GTPase
PRK	PF00485.18	gi|529076560|ref|YP_008375563.1|	-	0.069	12.9	0.0	0.14	11.9	0.0	1.5	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
MMR_HSR1	PF01926.23	gi|529076560|ref|YP_008375563.1|	-	0.07	13.2	0.0	0.9	9.6	0.0	2.2	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
NACHT	PF05729.12	gi|529076560|ref|YP_008375563.1|	-	0.091	12.7	0.0	0.16	11.9	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
DNA_pol_lambd_f	PF10391.9	gi|529076560|ref|YP_008375563.1|	-	0.1	12.4	0.0	0.21	11.4	0.0	1.5	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
DUF87	PF01935.17	gi|529076560|ref|YP_008375563.1|	-	0.15	12.1	0.1	0.79	9.8	0.0	2.1	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
AAA_15	PF13175.6	gi|529076560|ref|YP_008375563.1|	-	0.21	11.3	0.0	1.9	8.1	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
PhnJ	PF06007.11	gi|529076561|ref|YP_008375564.1|	-	5.5e-132	438.9	0.0	6.3e-132	438.7	0.0	1.0	1	0	0	1	1	1	1	Phosphonate	metabolism	protein	PhnJ
PhnI	PF05861.12	gi|529076562|ref|YP_008375565.1|	-	4.4e-144	479.7	0.0	5e-144	479.5	0.0	1.0	1	0	0	1	1	1	1	Bacterial	phosphonate	metabolism	protein	(PhnI)
PhnG	PF06754.12	gi|529076562|ref|YP_008375565.1|	-	0.0076	16.2	0.0	0.013	15.5	0.0	1.4	1	0	0	1	1	1	1	Phosphonate	metabolism	protein	PhnG
PhnH	PF05845.12	gi|529076563|ref|YP_008375566.1|	-	1.5e-32	112.9	0.2	1.8e-32	112.6	0.2	1.0	1	0	0	1	1	1	1	Bacterial	phosphonate	metabolism	protein	(PhnH)
PhnG	PF06754.12	gi|529076564|ref|YP_008375567.1|	-	4.2e-25	88.4	0.5	5e-25	88.1	0.5	1.0	1	0	0	1	1	1	1	Phosphonate	metabolism	protein	PhnG
PhnI	PF05861.12	gi|529076564|ref|YP_008375567.1|	-	0.015	14.2	0.0	0.021	13.7	0.0	1.3	1	0	0	1	1	1	0	Bacterial	phosphonate	metabolism	protein	(PhnI)
Phosphonate-bd	PF12974.7	gi|529076565|ref|YP_008375568.1|	-	4.6e-31	108.3	0.0	6.2e-31	107.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
ABC_tran	PF00005.27	gi|529076566|ref|YP_008375569.1|	-	7.9e-36	123.6	0.0	1e-35	123.2	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529076566|ref|YP_008375569.1|	-	4.1e-08	33.4	0.0	0.00072	19.5	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RsgA_GTPase	PF03193.16	gi|529076566|ref|YP_008375569.1|	-	1e-05	25.5	0.0	2.2e-05	24.4	0.0	1.7	1	1	0	1	1	1	1	RsgA	GTPase
AAA_29	PF13555.6	gi|529076566|ref|YP_008375569.1|	-	7.1e-05	22.5	0.0	0.00017	21.2	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|529076566|ref|YP_008375569.1|	-	0.0002	21.9	0.0	0.00026	21.5	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|529076566|ref|YP_008375569.1|	-	0.00026	21.4	0.1	0.00044	20.7	0.1	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
SMC_N	PF02463.19	gi|529076566|ref|YP_008375569.1|	-	0.0006	19.3	0.0	0.05	13.0	0.0	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
RNA12	PF10443.9	gi|529076566|ref|YP_008375569.1|	-	0.0057	15.4	0.0	0.0082	14.9	0.0	1.1	1	0	0	1	1	1	1	RNA12	protein
AAA_22	PF13401.6	gi|529076566|ref|YP_008375569.1|	-	0.0082	16.4	0.1	0.016	15.5	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|529076566|ref|YP_008375569.1|	-	0.012	15.4	0.0	0.017	14.8	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_27	PF13514.6	gi|529076566|ref|YP_008375569.1|	-	0.027	14.1	0.0	0.051	13.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|529076566|ref|YP_008375569.1|	-	0.027	14.7	0.0	0.076	13.3	0.0	1.9	1	0	0	1	1	1	0	AAA	domain
G-alpha	PF00503.20	gi|529076566|ref|YP_008375569.1|	-	0.034	13.3	0.0	0.034	13.3	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
MMR_HSR1	PF01926.23	gi|529076566|ref|YP_008375569.1|	-	0.034	14.2	0.1	0.06	13.4	0.1	1.5	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_18	PF13238.6	gi|529076566|ref|YP_008375569.1|	-	0.043	14.4	0.0	0.21	12.1	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
Mg_chelatase	PF01078.21	gi|529076566|ref|YP_008375569.1|	-	0.046	13.1	0.0	0.08	12.3	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_5	PF07728.14	gi|529076566|ref|YP_008375569.1|	-	0.089	12.8	0.0	0.33	10.9	0.0	1.9	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
IstB_IS21	PF01695.17	gi|529076566|ref|YP_008375569.1|	-	0.1	12.3	0.0	0.22	11.2	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
Rab3-GTPase_cat	PF13890.6	gi|529076566|ref|YP_008375569.1|	-	0.11	12.2	0.0	0.16	11.6	0.0	1.3	1	0	0	1	1	1	0	Rab3	GTPase-activating	protein	catalytic	subunit
Rad17	PF03215.15	gi|529076566|ref|YP_008375569.1|	-	0.11	12.4	0.0	0.15	11.9	0.0	1.2	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_33	PF13671.6	gi|529076566|ref|YP_008375569.1|	-	0.12	12.6	0.0	0.2	11.8	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|529076566|ref|YP_008375569.1|	-	0.2	10.9	0.0	0.3	10.3	0.0	1.2	1	0	0	1	1	1	0	Zeta	toxin
BPD_transp_1	PF00528.22	gi|529076567|ref|YP_008375570.1|	-	7.9e-10	38.8	12.4	7.9e-10	38.8	12.4	1.8	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF202	PF02656.15	gi|529076567|ref|YP_008375570.1|	-	5.6	7.5	13.3	6	7.4	6.9	3.3	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF202)
PhoU	PF01895.19	gi|529076568|ref|YP_008375571.1|	-	9.6e-17	61.2	11.9	9.7e-16	58.0	3.9	3.0	2	1	0	2	2	2	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|529076568|ref|YP_008375571.1|	-	8.3e-09	35.2	0.0	2.1e-08	33.9	0.0	1.7	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
Rota_NSP4	PF01452.16	gi|529076568|ref|YP_008375571.1|	-	0.0045	16.7	0.3	0.0081	15.9	0.3	1.4	1	0	0	1	1	1	1	Rotavirus	non	structural	protein
MCPsignal	PF00015.21	gi|529076568|ref|YP_008375571.1|	-	0.026	14.3	0.4	0.1	12.4	0.0	2.0	1	1	1	2	2	2	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
EDR1	PF14381.6	gi|529076568|ref|YP_008375571.1|	-	0.21	11.3	1.4	0.49	10.1	0.7	1.8	1	1	1	2	2	2	0	Ethylene-responsive	protein	kinase	Le-CTR1
Response_reg	PF00072.24	gi|529076569|ref|YP_008375572.1|	-	1.4e-12	47.8	0.0	3e-12	46.7	0.0	1.6	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HisKA	PF00512.25	gi|529076569|ref|YP_008375572.1|	-	9.9e-12	44.7	0.6	9.9e-12	44.7	0.6	3.2	3	1	1	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|529076569|ref|YP_008375572.1|	-	3.8e-09	36.8	0.3	3.8e-09	36.8	0.3	2.7	3	0	0	3	3	3	1	PAS	fold
PAS	PF00989.25	gi|529076569|ref|YP_008375572.1|	-	9e-09	35.3	0.0	2.3e-08	34.0	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.7	gi|529076569|ref|YP_008375572.1|	-	2.7e-08	33.6	0.2	8.5e-08	32.1	0.0	1.9	2	0	0	2	2	2	1	PAS	domain
PAS_9	PF13426.7	gi|529076569|ref|YP_008375572.1|	-	6.3e-07	29.6	0.1	2e-06	28.0	0.1	1.9	2	0	0	2	2	2	1	PAS	domain
GAF_2	PF13185.6	gi|529076569|ref|YP_008375572.1|	-	7.4e-05	23.1	1.0	0.00021	21.6	0.1	2.1	2	0	0	2	2	2	1	GAF	domain
GAF_3	PF13492.6	gi|529076569|ref|YP_008375572.1|	-	0.0023	18.3	0.0	0.0062	16.9	0.0	1.8	1	0	0	1	1	1	1	GAF	domain
OKR_DC_1_N	PF03709.15	gi|529076569|ref|YP_008375572.1|	-	0.017	15.4	0.0	0.045	14.0	0.0	1.8	1	0	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
Amidase	PF01425.21	gi|529076569|ref|YP_008375572.1|	-	0.048	12.6	0.0	0.081	11.9	0.0	1.3	1	0	0	1	1	1	0	Amidase
DDE_Tnp_1	PF01609.21	gi|529076570|ref|YP_008375573.1|	-	6.3e-29	101.2	0.0	8.2e-29	100.8	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.12	gi|529076570|ref|YP_008375573.1|	-	0.01	15.1	0.0	0.014	14.6	0.0	1.1	1	0	0	1	1	1	0	Archaeal	putative	transposase	ISC1217
Rop-like	PF05082.13	gi|529076570|ref|YP_008375573.1|	-	0.07	13.0	0.7	2.9	7.8	0.0	2.7	3	0	0	3	3	3	0	Rop-like
DDE_Tnp_1_4	PF13701.6	gi|529076570|ref|YP_008375573.1|	-	0.12	10.6	0.0	0.26	9.5	0.0	1.5	1	1	1	2	2	2	0	Transposase	DDE	domain	group	1
HATPase_c	PF02518.26	gi|529076571|ref|YP_008375574.1|	-	1.8e-12	47.8	0.1	2.1e-12	47.5	0.1	1.0	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|529076571|ref|YP_008375574.1|	-	0.0013	18.7	0.0	0.0014	18.5	0.0	1.1	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.6	gi|529076571|ref|YP_008375574.1|	-	0.031	14.2	0.0	0.036	14.0	0.0	1.1	1	0	0	1	1	1	0	GHKL	domain
PAS_9	PF13426.7	gi|529076572|ref|YP_008375575.1|	-	4.2e-42	142.6	0.1	1.2e-15	57.7	0.0	3.7	4	0	0	4	4	4	3	PAS	domain
PAS	PF00989.25	gi|529076572|ref|YP_008375575.1|	-	2.7e-38	130.4	0.0	2.9e-17	62.7	0.0	3.6	3	0	0	3	3	3	3	PAS	fold
PAS_8	PF13188.7	gi|529076572|ref|YP_008375575.1|	-	2.1e-29	101.0	0.1	1.1e-12	47.7	0.0	4.0	3	0	0	3	3	3	3	PAS	domain
PAS_4	PF08448.10	gi|529076572|ref|YP_008375575.1|	-	7.8e-29	100.1	1.5	3.1e-12	46.7	0.0	3.9	4	0	0	4	4	4	3	PAS	fold
PAS_3	PF08447.12	gi|529076572|ref|YP_008375575.1|	-	1.2e-18	67.1	0.0	5.7e-08	32.9	0.0	3.3	3	0	0	3	3	3	2	PAS	fold
HATPase_c	PF02518.26	gi|529076572|ref|YP_008375575.1|	-	1.3e-12	48.2	0.0	3e-12	47.0	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Response_reg	PF00072.24	gi|529076572|ref|YP_008375575.1|	-	2.1e-12	47.2	0.0	6.2e-12	45.7	0.0	1.8	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HATPase_c_2	PF13581.6	gi|529076572|ref|YP_008375575.1|	-	6.3e-07	29.4	0.1	1.4e-06	28.3	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_7	PF12860.7	gi|529076572|ref|YP_008375575.1|	-	7.5e-06	26.1	0.0	0.041	14.1	0.0	3.9	2	2	0	2	2	2	1	PAS	fold
PAS_12	PF18095.1	gi|529076572|ref|YP_008375575.1|	-	0.00027	20.6	0.0	0.32	10.6	0.0	2.3	2	0	0	2	2	2	2	UPF0242	C-terminal	PAS-like	domain
HATPase_c_3	PF13589.6	gi|529076572|ref|YP_008375575.1|	-	0.0014	18.5	0.0	0.0031	17.3	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_10	PF13596.6	gi|529076572|ref|YP_008375575.1|	-	0.01	16.4	0.0	0.32	11.6	0.0	2.8	3	0	0	3	3	2	0	PAS	domain
SPOB_a	PF14689.6	gi|529076572|ref|YP_008375575.1|	-	0.016	14.9	0.1	0.05	13.3	0.1	1.8	1	0	0	1	1	1	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
HATPase_c_5	PF14501.6	gi|529076572|ref|YP_008375575.1|	-	0.03	14.2	0.0	0.083	12.8	0.0	1.7	1	0	0	1	1	1	0	GHKL	domain
HisKA	PF00512.25	gi|529076572|ref|YP_008375575.1|	-	0.12	12.5	2.7	0.14	12.3	0.1	2.5	3	0	0	3	3	2	0	His	Kinase	A	(phospho-acceptor)	domain
MEKHLA	PF08670.11	gi|529076572|ref|YP_008375575.1|	-	0.13	12.2	0.0	0.43	10.5	0.0	1.9	1	1	0	1	1	1	0	MEKHLA	domain
MFS_1	PF07690.16	gi|529076574|ref|YP_008375577.1|	-	0.086	11.8	6.5	0.095	11.6	6.5	1.1	1	0	0	1	1	1	0	Major	Facilitator	Superfamily
ATPgrasp_N	PF18130.1	gi|529076575|ref|YP_008375578.1|	-	0.03	14.9	0.1	0.099	13.2	0.0	1.8	2	0	0	2	2	2	0	ATP-grasp	N-terminal	domain
zf-CSL	PF05207.13	gi|529076576|ref|YP_008375579.1|	-	0.035	13.8	0.3	0.036	13.8	0.3	1.1	1	0	0	1	1	1	0	CSL	zinc	finger
zf-H2C2_2	PF13465.6	gi|529076576|ref|YP_008375579.1|	-	0.068	13.6	1.1	0.078	13.4	0.2	1.6	1	1	0	1	1	1	0	Zinc-finger	double	domain
TauE	PF01925.19	gi|529076577|ref|YP_008375580.1|	-	1.4e-17	64.2	36.4	1.7e-17	63.8	36.4	1.0	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
MCPsignal	PF00015.21	gi|529076578|ref|YP_008375581.1|	-	2.1e-38	131.8	24.9	2.1e-38	131.8	24.9	2.0	1	1	1	2	2	2	1	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
BLOC1_2	PF10046.9	gi|529076578|ref|YP_008375581.1|	-	2e-05	24.8	13.8	0.055	13.8	2.1	3.7	1	1	1	3	3	3	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Sec8_exocyst	PF04048.14	gi|529076578|ref|YP_008375581.1|	-	0.00017	21.5	6.8	0.025	14.5	1.2	2.3	2	0	0	2	2	2	2	Sec8	exocyst	complex	component	specific	domain
Fib_alpha	PF08702.10	gi|529076578|ref|YP_008375581.1|	-	0.00084	19.5	5.6	0.21	11.7	0.8	2.3	2	0	0	2	2	2	2	Fibrinogen	alpha/beta	chain	family
DUF948	PF06103.11	gi|529076578|ref|YP_008375581.1|	-	0.0078	16.4	16.4	6.2	7.1	0.5	4.0	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
Kre28	PF17097.5	gi|529076578|ref|YP_008375581.1|	-	0.0097	14.9	2.2	0.0097	14.9	2.2	2.2	1	1	1	2	2	2	1	Spindle	pole	body	component
RPW8	PF05659.11	gi|529076578|ref|YP_008375581.1|	-	0.011	15.4	1.6	0.17	11.6	0.1	2.8	2	2	0	2	2	2	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Laminin_II	PF06009.12	gi|529076578|ref|YP_008375581.1|	-	0.015	15.3	19.8	0.3	11.1	0.5	3.3	2	2	1	3	3	3	0	Laminin	Domain	II
DUF1664	PF07889.12	gi|529076578|ref|YP_008375581.1|	-	0.015	15.3	10.5	0.029	14.4	1.8	2.7	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
CK2S	PF15011.6	gi|529076578|ref|YP_008375581.1|	-	0.028	14.3	4.9	0.039	13.8	3.6	1.9	1	1	1	2	2	2	0	Casein	Kinase	2	substrate
Nic96	PF04097.14	gi|529076578|ref|YP_008375581.1|	-	0.03	12.8	5.7	0.028	12.9	2.5	1.8	1	1	1	2	2	2	0	Nup93/Nic96
Phasin_2	PF09361.10	gi|529076578|ref|YP_008375581.1|	-	0.041	14.1	17.9	0.84	9.9	5.2	3.5	2	1	1	3	3	3	0	Phasin	protein
DUF2779	PF11074.8	gi|529076578|ref|YP_008375581.1|	-	0.044	14.2	0.9	3.1	8.3	0.1	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function(DUF2779)
TPR_MLP1_2	PF07926.12	gi|529076578|ref|YP_008375581.1|	-	0.096	12.7	17.9	1.6	8.8	8.0	3.1	2	1	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
AAA_13	PF13166.6	gi|529076578|ref|YP_008375581.1|	-	0.1	11.2	10.9	0.13	10.9	10.9	1.1	1	0	0	1	1	1	0	AAA	domain
Syntaxin-6_N	PF09177.11	gi|529076578|ref|YP_008375581.1|	-	0.25	11.9	13.0	0.37	11.4	2.3	3.3	2	2	1	3	3	3	0	Syntaxin	6,	N-terminal
ING	PF12998.7	gi|529076578|ref|YP_008375581.1|	-	0.29	11.8	5.6	12	6.5	0.1	3.5	2	2	0	3	3	3	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
Occludin_ELL	PF07303.13	gi|529076578|ref|YP_008375581.1|	-	0.33	11.7	1.1	35	5.2	0.4	3.4	1	1	3	4	4	4	0	Occludin	homology	domain
APG6_N	PF17675.1	gi|529076578|ref|YP_008375581.1|	-	0.57	10.7	13.7	0.099	13.2	4.7	2.5	2	1	0	2	2	2	0	Apg6	coiled-coil	region
XhlA	PF10779.9	gi|529076578|ref|YP_008375581.1|	-	0.61	10.3	12.9	1.3	9.3	0.2	4.2	5	0	0	5	5	4	0	Haemolysin	XhlA
DegS	PF05384.11	gi|529076578|ref|YP_008375581.1|	-	0.75	9.3	13.4	0.52	9.8	0.9	3.3	2	2	1	3	3	3	0	Sensor	protein	DegS
LMBR1	PF04791.16	gi|529076578|ref|YP_008375581.1|	-	1	8.2	2.5	1.4	7.8	2.5	1.2	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
AATF-Che1	PF13339.6	gi|529076578|ref|YP_008375581.1|	-	1.1	9.9	7.1	25	5.5	7.0	2.4	1	1	0	1	1	1	0	Apoptosis	antagonizing	transcription	factor
DUF3450	PF11932.8	gi|529076578|ref|YP_008375581.1|	-	1.6	8.0	20.3	0.82	8.9	4.3	2.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3450)
Barstar	PF01337.18	gi|529076578|ref|YP_008375581.1|	-	1.7	8.7	5.0	1.4	9.0	0.1	2.9	2	1	1	3	3	3	0	Barstar	(barnase	inhibitor)
Spc7	PF08317.11	gi|529076578|ref|YP_008375581.1|	-	2.1	7.1	15.7	3.7	6.3	1.8	2.2	1	1	1	2	2	2	0	Spc7	kinetochore	protein
DUF2203	PF09969.9	gi|529076578|ref|YP_008375581.1|	-	2.3	8.9	13.0	1.6	9.5	1.6	3.0	1	1	2	3	3	3	0	Uncharacterized	conserved	protein	(DUF2203)
Tropomyosin	PF00261.20	gi|529076578|ref|YP_008375581.1|	-	2.5	7.4	18.7	2	7.7	4.9	2.1	2	0	0	2	2	2	0	Tropomyosin
I_LWEQ	PF01608.17	gi|529076578|ref|YP_008375581.1|	-	3.1	8.0	18.1	0.34	11.2	4.5	2.9	1	1	1	2	2	2	0	I/LWEQ	domain
TMP_2	PF06791.13	gi|529076578|ref|YP_008375581.1|	-	3.5	7.3	20.2	0.9	9.2	5.9	2.7	1	1	1	2	2	2	0	Prophage	tail	length	tape	measure	protein
FAM184	PF15665.5	gi|529076578|ref|YP_008375581.1|	-	3.8	7.2	12.8	15	5.3	12.2	2.2	1	1	0	1	1	1	0	Family	with	sequence	similarity	184,	A	and	B
Sec34	PF04136.15	gi|529076578|ref|YP_008375581.1|	-	4.8	7.0	10.6	24	4.8	0.8	3.5	1	1	1	3	3	3	0	Sec34-like	family
PCRF	PF03462.18	gi|529076578|ref|YP_008375581.1|	-	5.1	6.9	15.0	1.4	8.7	4.6	2.7	1	1	2	3	3	3	0	PCRF	domain
Cep57_CLD	PF14073.6	gi|529076578|ref|YP_008375581.1|	-	7.5	6.5	12.8	8.5	6.4	9.5	2.4	1	1	1	2	2	2	0	Centrosome	localisation	domain	of	Cep57
Fez1	PF06818.15	gi|529076578|ref|YP_008375581.1|	-	8.5	6.8	10.7	8	6.9	0.6	2.1	1	1	1	2	2	2	0	Fez1
DUF2533	PF10752.9	gi|529076578|ref|YP_008375581.1|	-	8.8	6.8	9.3	4.6	7.7	2.3	3.0	2	2	0	2	2	2	0	Protein	of	unknown	function	(DUF2533)
RSS_P20	PF11757.8	gi|529076578|ref|YP_008375581.1|	-	9.8	6.7	7.1	4.2	7.9	0.1	3.1	3	1	0	3	3	3	0	Suppressor	of	RNA	silencing	P21-like	N-terminal	domain
DUF883	PF05957.13	gi|529076578|ref|YP_008375581.1|	-	9.8	6.9	21.1	3.6	8.3	7.7	3.7	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
zf-C2H2	PF00096.26	gi|529076579|ref|YP_008375582.1|	-	0.011	16.1	0.2	0.015	15.7	0.2	1.2	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.6	gi|529076579|ref|YP_008375582.1|	-	0.043	14.7	0.2	0.056	14.3	0.2	1.3	1	0	0	1	1	1	0	C2H2-type	zinc	finger
zf-C2H2_12	PF18658.1	gi|529076579|ref|YP_008375582.1|	-	0.11	12.1	0.0	0.12	11.9	0.0	1.1	1	0	0	1	1	1	0	Zinc-finger	C2H2-type
HTH_IclR	PF09339.10	gi|529076580|ref|YP_008375583.1|	-	3.8e-05	23.4	0.0	0.00011	21.9	0.0	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|529076580|ref|YP_008375583.1|	-	0.00014	21.7	0.0	0.00032	20.5	0.0	1.5	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|529076580|ref|YP_008375583.1|	-	0.00033	20.5	0.0	0.00074	19.4	0.0	1.6	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|529076580|ref|YP_008375583.1|	-	0.00035	20.4	0.0	0.0006	19.6	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|529076580|ref|YP_008375583.1|	-	0.00079	18.9	0.0	0.0017	17.9	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Desulfoferrod_N	PF06397.12	gi|529076580|ref|YP_008375583.1|	-	0.0034	17.0	0.7	0.0058	16.2	0.7	1.4	1	0	0	1	1	1	1	Desulfoferrodoxin,	N-terminal	domain
HTH_27	PF13463.6	gi|529076580|ref|YP_008375583.1|	-	0.0051	17.3	0.0	0.014	15.9	0.0	1.7	2	0	0	2	2	1	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|529076580|ref|YP_008375583.1|	-	0.0065	16.5	0.0	0.014	15.5	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Dimerisation2	PF16864.5	gi|529076580|ref|YP_008375583.1|	-	0.0083	16.1	0.0	0.015	15.2	0.0	1.4	1	0	0	1	1	1	1	Dimerisation	domain
HTH_DeoR	PF08220.12	gi|529076580|ref|YP_008375583.1|	-	0.031	14.0	0.0	0.054	13.2	0.0	1.3	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_36	PF13730.6	gi|529076580|ref|YP_008375583.1|	-	0.042	13.8	0.0	0.07	13.1	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|529076580|ref|YP_008375583.1|	-	0.062	13.3	0.0	0.12	12.5	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
TFIIE_alpha	PF02002.17	gi|529076580|ref|YP_008375583.1|	-	0.082	12.8	0.0	0.13	12.2	0.0	1.4	1	0	0	1	1	1	0	TFIIE	alpha	subunit
DUF742	PF05331.11	gi|529076580|ref|YP_008375583.1|	-	0.096	12.5	0.0	0.2	11.5	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
HTH_40	PF14493.6	gi|529076580|ref|YP_008375583.1|	-	0.11	13.0	0.0	0.21	12.1	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_38	PF13936.6	gi|529076580|ref|YP_008375583.1|	-	0.18	11.6	0.0	0.33	10.8	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_20	PF12840.7	gi|529076581|ref|YP_008375584.1|	-	0.017	15.2	0.0	0.021	14.9	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
Med10	PF09748.9	gi|529076581|ref|YP_008375584.1|	-	0.18	11.8	0.0	0.22	11.5	0.0	1.3	1	1	0	1	1	1	0	Transcription	factor	subunit	Med10	of	Mediator	complex
MtrB	PF05440.12	gi|529076582|ref|YP_008375585.1|	-	0.096	13.1	0.0	0.096	13.1	0.0	2.7	4	0	0	4	4	4	0	Tetrahydromethanopterin	S-methyltransferase	subunit	B
DUF3021	PF11457.8	gi|529076582|ref|YP_008375585.1|	-	0.65	10.3	7.0	1.2	9.5	7.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3021)
Sporozoite_P67	PF05642.11	gi|529076584|ref|YP_008375587.1|	-	0.07	11.2	1.2	0.073	11.1	1.2	1.0	1	0	0	1	1	1	0	Sporozoite	P67	surface	antigen
ApbE	PF02424.15	gi|529076585|ref|YP_008375588.1|	-	9.4e-39	133.5	0.0	1.1e-38	133.3	0.0	1.0	1	0	0	1	1	1	1	ApbE	family
TSP_3	PF02412.18	gi|529076586|ref|YP_008375589.1|	-	3.1e-05	23.6	2.9	0.00012	21.7	0.6	2.1	2	0	0	2	2	2	2	Thrombospondin	type	3	repeat
Ferric_reduct	PF01794.19	gi|529076587|ref|YP_008375590.1|	-	0.0086	16.2	5.0	0.0086	16.2	5.0	1.8	2	1	1	3	3	3	1	Ferric	reductase	like	transmembrane	component
HTH_20	PF12840.7	gi|529076588|ref|YP_008375591.1|	-	8.1e-19	67.4	2.1	6.3e-11	42.2	0.9	2.2	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|529076588|ref|YP_008375591.1|	-	4.9e-16	58.0	0.1	6.6e-08	32.0	0.0	2.2	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|529076588|ref|YP_008375591.1|	-	9.7e-15	54.2	0.2	7.5e-09	35.3	0.0	2.5	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|529076588|ref|YP_008375591.1|	-	4.8e-09	36.0	0.0	8e-06	25.7	0.0	2.2	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|529076588|ref|YP_008375591.1|	-	8.2e-09	35.2	0.6	0.00014	21.6	0.2	2.4	2	0	0	2	2	2	2	MarR	family
Penicillinase_R	PF03965.16	gi|529076588|ref|YP_008375591.1|	-	2.1e-08	34.5	0.1	0.0015	18.9	0.1	2.3	1	1	1	2	2	2	2	Penicillinase	repressor
HTH_27	PF13463.6	gi|529076588|ref|YP_008375591.1|	-	5e-08	33.3	0.3	2e-05	25.0	0.1	2.4	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
RP-C	PF03428.13	gi|529076588|ref|YP_008375591.1|	-	7.3e-06	25.7	0.1	0.023	14.4	0.0	2.3	1	1	1	2	2	2	2	Replication	protein	C	N-terminal	domain
MarR	PF01047.22	gi|529076588|ref|YP_008375591.1|	-	9.2e-06	25.5	0.4	0.0051	16.7	0.1	2.8	3	1	1	4	4	4	1	MarR	family
BLACT_WH	PF17778.1	gi|529076588|ref|YP_008375591.1|	-	0.0003	20.7	0.1	1.1	9.3	0.1	3.2	3	0	0	3	3	3	2	Beta-lactamase	associated	winged	helix	domain
DUF2513	PF10711.9	gi|529076588|ref|YP_008375591.1|	-	0.00082	19.6	0.1	0.5	10.7	0.0	2.3	1	1	0	2	2	2	2	Hypothetical	protein	(DUF2513)
HTH_34	PF13601.6	gi|529076588|ref|YP_008375591.1|	-	0.0013	18.9	0.0	0.29	11.4	0.0	2.2	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_AsnC-type	PF13404.6	gi|529076588|ref|YP_008375591.1|	-	0.0013	18.5	0.1	0.0046	16.8	0.0	2.0	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|529076588|ref|YP_008375591.1|	-	0.0034	17.6	0.0	0.0096	16.1	0.0	1.8	2	0	0	2	2	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_10	PF04967.12	gi|529076588|ref|YP_008375591.1|	-	0.011	15.5	0.4	8.3	6.3	0.0	3.2	2	2	0	2	2	2	0	HTH	DNA	binding	domain
HTH_Crp_2	PF13545.6	gi|529076588|ref|YP_008375591.1|	-	0.012	15.6	0.0	0.077	13.0	0.1	2.2	2	1	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_38	PF13936.6	gi|529076588|ref|YP_008375591.1|	-	0.022	14.5	0.1	0.21	11.4	0.0	2.6	3	0	0	3	3	3	0	Helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|529076588|ref|YP_008375591.1|	-	0.028	14.1	0.0	0.41	10.4	0.0	2.4	2	1	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
T3SS_needle_E	PF08988.10	gi|529076588|ref|YP_008375591.1|	-	0.041	14.0	0.1	12	6.1	0.0	2.4	2	0	0	2	2	2	0	Type	III	secretion	system,	cytoplasmic	E	component	of	needle
HTH_11	PF08279.12	gi|529076588|ref|YP_008375591.1|	-	0.062	13.2	0.3	3.7	7.6	0.1	2.4	2	0	0	2	2	2	0	HTH	domain
DUF416	PF04222.12	gi|529076588|ref|YP_008375591.1|	-	0.063	12.7	0.0	0.079	12.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF416)
HTH_47	PF16221.5	gi|529076588|ref|YP_008375591.1|	-	0.085	12.4	0.1	7.2	6.3	0.0	2.4	2	0	0	2	2	2	0	winged	helix-turn-helix
Exosortase_EpsH	PF09721.10	gi|529076589|ref|YP_008375592.1|	-	0.0087	15.6	5.7	0.0092	15.5	5.7	1.0	1	0	0	1	1	1	1	Transmembrane	exosortase	(Exosortase_EpsH)
DUF981	PF06168.11	gi|529076589|ref|YP_008375592.1|	-	0.016	15.2	5.7	0.041	13.8	5.7	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF981)
DUF3953	PF13129.6	gi|529076589|ref|YP_008375592.1|	-	0.035	13.9	3.7	0.87	9.4	0.4	3.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3953)
MaAIMP_sms	PF16951.5	gi|529076589|ref|YP_008375592.1|	-	0.062	13.1	0.1	2.4	8.0	0.0	2.2	2	0	0	2	2	2	0	Putative	methionine	and	alanine	importer,	small	subunit
DUF4131	PF13567.6	gi|529076589|ref|YP_008375592.1|	-	1.1	8.9	7.0	0.097	12.3	1.9	1.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4131)
DUF998	PF06197.13	gi|529076589|ref|YP_008375592.1|	-	1.7	8.2	11.1	0.91	9.1	2.7	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF998)
CMD	PF02627.20	gi|529076591|ref|YP_008375594.1|	-	2e-10	40.6	0.2	1.4e-08	34.7	0.0	2.3	1	1	1	2	2	2	2	Carboxymuconolactone	decarboxylase	family
TauE	PF01925.19	gi|529076592|ref|YP_008375595.1|	-	8.6e-36	123.8	24.2	1.4e-35	123.1	24.2	1.2	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
adh_short_C2	PF13561.6	gi|529076593|ref|YP_008375596.1|	-	8.2e-38	130.3	1.0	1.4e-37	129.5	1.0	1.3	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|529076593|ref|YP_008375596.1|	-	2.4e-31	108.7	0.1	3.1e-31	108.4	0.1	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
Epimerase	PF01370.21	gi|529076593|ref|YP_008375596.1|	-	0.00014	21.4	0.2	0.0002	20.9	0.2	1.4	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
KR	PF08659.10	gi|529076593|ref|YP_008375596.1|	-	0.00046	20.1	0.7	0.001	19.0	0.7	1.6	1	1	0	1	1	1	1	KR	domain
GDP_Man_Dehyd	PF16363.5	gi|529076593|ref|YP_008375596.1|	-	0.015	14.7	0.0	0.023	14.1	0.0	1.2	1	0	0	1	1	1	0	GDP-mannose	4,6	dehydratase
3HCDH_N	PF02737.18	gi|529076593|ref|YP_008375596.1|	-	0.2	11.5	0.9	8.5	6.2	0.2	2.3	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Patatin	PF01734.22	gi|529076594|ref|YP_008375597.1|	-	2.4e-14	54.0	2.9	9e-13	48.9	2.9	2.1	1	1	0	1	1	1	1	Patatin-like	phospholipase
Hexapep	PF00132.24	gi|529076595|ref|YP_008375598.1|	-	7.8e-13	47.6	7.3	1.3e-07	31.0	2.4	2.5	2	1	0	2	2	2	2	Bacterial	transferase	hexapeptide	(six	repeats)
SATase_N	PF06426.14	gi|529076595|ref|YP_008375598.1|	-	1.2e-07	32.0	0.0	2.2e-07	31.2	0.0	1.4	1	0	0	1	1	1	1	Serine	acetyltransferase,	N-terminal
Hexapep_2	PF14602.6	gi|529076595|ref|YP_008375598.1|	-	0.00023	20.8	1.7	0.00023	20.8	1.7	2.7	2	1	0	2	2	2	1	Hexapeptide	repeat	of	succinyl-transferase
IL28A	PF15177.6	gi|529076595|ref|YP_008375598.1|	-	0.067	13.0	0.0	0.1	12.5	0.0	1.2	1	0	0	1	1	1	0	Interleukin-28A
Pyr_redox_2	PF07992.14	gi|529076596|ref|YP_008375599.1|	-	1.3e-30	106.6	0.2	1.6e-30	106.4	0.2	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|529076596|ref|YP_008375599.1|	-	5.3e-14	52.2	0.1	2e-10	40.5	0.0	2.6	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|529076596|ref|YP_008375599.1|	-	1.3e-06	28.2	3.9	0.013	15.1	0.0	2.6	2	1	1	3	3	3	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|529076596|ref|YP_008375599.1|	-	4.3e-06	25.7	0.1	0.015	14.0	0.8	2.1	2	0	0	2	2	2	2	HI0933-like	protein
FAD_binding_2	PF00890.24	gi|529076596|ref|YP_008375599.1|	-	6e-06	25.6	5.6	0.00028	20.1	1.5	2.8	2	1	1	3	3	3	2	FAD	binding	domain
Pyr_redox	PF00070.27	gi|529076596|ref|YP_008375599.1|	-	1.3e-05	25.6	0.8	0.15	12.7	0.0	2.7	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|529076596|ref|YP_008375599.1|	-	2.7e-05	23.4	0.3	0.00013	21.2	0.4	1.8	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.7	gi|529076596|ref|YP_008375599.1|	-	0.00011	21.6	2.4	0.00018	21.0	2.4	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
NAD_binding_9	PF13454.6	gi|529076596|ref|YP_008375599.1|	-	0.00073	19.6	0.4	0.02	14.9	0.0	2.7	3	0	0	3	3	3	1	FAD-NAD(P)-binding
K_oxygenase	PF13434.6	gi|529076596|ref|YP_008375599.1|	-	0.00092	18.4	0.0	0.02	14.1	0.0	2.1	2	0	0	2	2	2	1	L-lysine	6-monooxygenase	(NADPH-requiring)
FAD_binding_3	PF01494.19	gi|529076596|ref|YP_008375599.1|	-	0.0015	17.9	0.5	0.0035	16.6	0.7	1.5	2	0	0	2	2	2	1	FAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|529076596|ref|YP_008375599.1|	-	0.0024	17.2	0.1	0.004	16.5	0.1	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Thi4	PF01946.17	gi|529076596|ref|YP_008375599.1|	-	0.0039	16.5	0.1	0.0061	15.8	0.1	1.4	1	0	0	1	1	1	1	Thi4	family
NAD_binding_8	PF13450.6	gi|529076596|ref|YP_008375599.1|	-	0.034	14.4	0.4	0.072	13.3	0.4	1.6	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
Trp_halogenase	PF04820.14	gi|529076596|ref|YP_008375599.1|	-	0.091	11.6	0.9	0.34	9.7	0.4	2.1	2	0	0	2	2	2	0	Tryptophan	halogenase
Lycopene_cycl	PF05834.12	gi|529076596|ref|YP_008375599.1|	-	0.18	10.8	0.3	0.39	9.7	0.3	1.5	2	0	0	2	2	2	0	Lycopene	cyclase	protein
AhpC-TSA	PF00578.21	gi|529076597|ref|YP_008375600.1|	-	9.3e-16	57.9	0.0	1.2e-15	57.5	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|529076597|ref|YP_008375600.1|	-	1.3e-07	31.4	0.0	1.6e-07	31.1	0.0	1.1	1	0	0	1	1	1	1	Redoxin
PXT1	PF15214.6	gi|529076597|ref|YP_008375600.1|	-	0.077	13.4	0.4	0.35	11.2	0.0	2.0	2	0	0	2	2	2	0	Peroxisomal	testis-specific	protein	1
Thioredoxin_8	PF13905.6	gi|529076597|ref|YP_008375600.1|	-	0.16	12.3	0.0	0.24	11.8	0.0	1.4	1	1	0	1	1	1	0	Thioredoxin-like
Pyr_redox_2	PF07992.14	gi|529076598|ref|YP_008375601.1|	-	1.2e-53	182.3	3.5	1.7e-53	181.8	3.5	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|529076598|ref|YP_008375601.1|	-	7.6e-26	90.5	0.4	1.5e-25	89.6	0.4	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|529076598|ref|YP_008375601.1|	-	2.5e-14	53.6	3.9	3.6e-13	49.9	0.1	2.7	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|529076598|ref|YP_008375601.1|	-	5.8e-12	45.5	0.6	2.7e-11	43.3	0.6	1.9	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|529076598|ref|YP_008375601.1|	-	2e-07	30.4	0.2	4.5e-07	29.3	0.2	1.5	1	1	0	1	1	1	1	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.7	gi|529076598|ref|YP_008375601.1|	-	0.00015	21.3	0.2	0.00027	20.4	0.2	1.5	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|529076598|ref|YP_008375601.1|	-	0.00037	19.7	0.3	0.00037	19.7	0.3	2.3	2	1	1	3	3	3	1	FAD	binding	domain
Multi_ubiq	PF14452.6	gi|529076598|ref|YP_008375601.1|	-	0.00065	19.9	0.2	0.091	13.0	0.0	2.7	2	0	0	2	2	2	1	Multiubiquitin
K_oxygenase	PF13434.6	gi|529076598|ref|YP_008375601.1|	-	0.006	15.8	0.0	0.038	13.1	0.0	2.0	1	1	0	2	2	2	1	L-lysine	6-monooxygenase	(NADPH-requiring)
3HCDH_N	PF02737.18	gi|529076598|ref|YP_008375601.1|	-	0.036	14.0	0.4	8.1	6.3	0.1	2.4	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
HxlR	PF01638.17	gi|529076599|ref|YP_008375602.1|	-	5.6e-24	83.8	0.0	7.2e-24	83.5	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
PadR	PF03551.14	gi|529076599|ref|YP_008375602.1|	-	0.012	15.6	0.0	0.02	14.9	0.0	1.5	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_34	PF13601.6	gi|529076599|ref|YP_008375602.1|	-	0.14	12.3	0.0	0.29	11.3	0.0	1.5	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
ThiF	PF00899.21	gi|529076600|ref|YP_008375603.1|	-	8.9e-67	225.0	0.0	1.1e-66	224.7	0.0	1.0	1	0	0	1	1	1	1	ThiF	family
Sacchrp_dh_NADP	PF03435.18	gi|529076600|ref|YP_008375603.1|	-	0.00049	20.4	1.3	0.0036	17.6	1.3	2.0	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
MMR_HSR1_C	PF08438.10	gi|529076601|ref|YP_008375604.1|	-	4.2e-27	94.9	0.0	6.4e-27	94.3	0.0	1.3	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.23	gi|529076601|ref|YP_008375604.1|	-	1.9e-19	69.8	0.0	7.6e-19	67.9	0.0	2.0	2	1	0	2	2	2	1	50S	ribosome-binding	GTPase
TGS	PF02824.21	gi|529076601|ref|YP_008375604.1|	-	2.2e-10	40.4	0.0	4.5e-10	39.4	0.0	1.6	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.18	gi|529076601|ref|YP_008375604.1|	-	1.8e-05	24.3	0.0	0.00018	21.1	0.0	2.4	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
YchF-GTPase_C	PF06071.13	gi|529076601|ref|YP_008375604.1|	-	0.13	12.4	0.0	0.32	11.2	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF933)
MeaB	PF03308.16	gi|529076601|ref|YP_008375604.1|	-	0.16	10.9	0.0	0.24	10.4	0.0	1.3	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
Dynamin_N	PF00350.23	gi|529076601|ref|YP_008375604.1|	-	0.17	11.9	0.2	1	9.4	0.0	2.2	3	0	0	3	3	3	0	Dynamin	family
TP6A_N	PF04406.14	gi|529076602|ref|YP_008375605.1|	-	1.8e-14	53.4	0.5	3.1e-14	52.7	0.5	1.4	1	0	0	1	1	1	1	Type	IIB	DNA	topoisomerase
Topo-VIb_trans	PF09239.11	gi|529076603|ref|YP_008375606.1|	-	3.2e-61	205.8	0.0	8.1e-61	204.5	0.0	1.7	1	0	0	1	1	1	1	Topoisomerase	VI	B	subunit,	transducer
Top6b_C	PF18000.1	gi|529076603|ref|YP_008375606.1|	-	1.7e-32	112.0	1.5	5.3e-32	110.4	1.5	2.0	1	0	0	1	1	1	1	Type	2	DNA	topoisomerase	6	subunit	B	C-terminal	domain
Intein_splicing	PF14890.6	gi|529076603|ref|YP_008375606.1|	-	1.3e-20	73.7	0.0	3.6e-20	72.3	0.0	1.7	1	0	0	1	1	1	1	Intein	splicing	domain
HATPase_c	PF02518.26	gi|529076603|ref|YP_008375606.1|	-	7.9e-09	36.0	0.0	6.5e-07	29.8	0.0	3.2	3	0	0	3	3	3	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_3	PF13589.6	gi|529076603|ref|YP_008375606.1|	-	4.9e-08	32.9	0.0	5.8e-05	22.9	0.0	2.5	2	0	0	2	2	2	2	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
LAGLIDADG_3	PF14528.6	gi|529076603|ref|YP_008375606.1|	-	3.5e-07	30.4	0.0	0.0035	17.6	0.0	2.8	2	0	0	2	2	2	2	LAGLIDADG-like	domain
Hint	PF01079.20	gi|529076603|ref|YP_008375606.1|	-	0.0036	16.8	0.0	0.0067	16.0	0.0	1.4	1	0	0	1	1	1	1	Hint	module
Regulator_TrmB	PF11495.8	gi|529076604|ref|YP_008375607.1|	-	3.1e-55	186.9	1.7	4.2e-55	186.5	1.7	1.2	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.19	gi|529076604|ref|YP_008375607.1|	-	1.9e-16	59.7	0.0	3.8e-16	58.7	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|529076604|ref|YP_008375607.1|	-	0.00033	20.5	0.0	0.00094	19.0	0.0	1.8	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|529076604|ref|YP_008375607.1|	-	0.00059	19.7	0.1	0.013	15.5	0.0	2.6	2	0	0	2	2	2	1	HTH	domain
Rrf2	PF02082.20	gi|529076604|ref|YP_008375607.1|	-	0.0016	18.8	0.0	0.0042	17.4	0.0	1.7	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_36	PF13730.6	gi|529076604|ref|YP_008375607.1|	-	0.0033	17.3	0.0	0.16	11.9	0.0	2.7	1	1	1	2	2	2	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|529076604|ref|YP_008375607.1|	-	0.0035	17.1	0.0	0.024	14.5	0.0	2.2	2	1	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|529076604|ref|YP_008375607.1|	-	0.0044	16.5	0.0	0.0099	15.4	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
PLDc_2	PF13091.6	gi|529076604|ref|YP_008375607.1|	-	0.0073	16.2	0.0	0.013	15.4	0.0	1.5	1	0	0	1	1	1	1	PLD-like	domain
Actin_micro	PF17003.5	gi|529076604|ref|YP_008375607.1|	-	0.044	13.0	0.0	0.064	12.4	0.0	1.1	1	0	0	1	1	1	0	Putative	actin-like	family
FokI_C	PF02980.16	gi|529076604|ref|YP_008375607.1|	-	0.053	13.6	0.0	0.11	12.5	0.0	1.5	1	0	0	1	1	1	0	Restriction	endonuclease	FokI,	catalytic	domain
MarR	PF01047.22	gi|529076604|ref|YP_008375607.1|	-	0.054	13.4	0.0	0.099	12.6	0.0	1.4	1	0	0	1	1	1	0	MarR	family
Cdc6_C	PF09079.11	gi|529076604|ref|YP_008375607.1|	-	0.064	13.2	0.0	0.26	11.3	0.0	2.1	2	0	0	2	2	2	0	CDC6,	C	terminal	winged	helix	domain
GGDEF_2	PF17853.1	gi|529076604|ref|YP_008375607.1|	-	0.096	12.9	1.6	0.3	11.4	0.6	2.4	2	1	0	2	2	2	0	GGDEF-like	domain
FaeA	PF04703.12	gi|529076604|ref|YP_008375607.1|	-	0.16	12.4	0.0	0.46	10.9	0.0	1.8	1	1	0	1	1	1	0	FaeA-like	protein
DNA_gyraseB	PF00204.25	gi|529076606|ref|YP_008375609.1|	-	2e-60	203.2	0.4	3.6e-60	202.4	0.4	1.4	1	0	0	1	1	1	1	DNA	gyrase	B
DNA_gyraseB_C	PF00986.21	gi|529076606|ref|YP_008375609.1|	-	9e-30	102.7	0.0	2e-29	101.5	0.0	1.6	1	0	0	1	1	1	1	DNA	gyrase	B	subunit,	carboxyl	terminus
HATPase_c	PF02518.26	gi|529076606|ref|YP_008375609.1|	-	1.6e-22	80.1	0.2	7.5e-22	78.0	0.1	2.1	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Toprim	PF01751.22	gi|529076606|ref|YP_008375609.1|	-	1.1e-18	67.3	0.0	3.1e-18	65.9	0.0	1.8	1	0	0	1	1	1	1	Toprim	domain
HATPase_c_3	PF13589.6	gi|529076606|ref|YP_008375609.1|	-	1.4e-05	25.0	0.1	4e-05	23.5	0.1	1.8	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_6	PF08348.11	gi|529076606|ref|YP_008375609.1|	-	0.16	11.8	0.0	0.36	10.7	0.0	1.5	1	0	0	1	1	1	0	YheO-like	PAS	domain
DNA_topoisoIV	PF00521.20	gi|529076607|ref|YP_008375610.1|	-	6.5e-155	516.2	0.0	8e-155	515.9	0.0	1.1	1	0	0	1	1	1	1	DNA	gyrase/topoisomerase	IV,	subunit	A
DNA_gyraseA_C	PF03989.13	gi|529076607|ref|YP_008375610.1|	-	2.5e-72	238.2	9.0	2.1e-14	52.7	0.2	6.4	6	0	0	6	6	6	6	DNA	gyrase	C-terminal	domain,	beta-propeller
IKI3	PF04762.12	gi|529076607|ref|YP_008375610.1|	-	0.028	12.4	0.1	0.028	12.4	0.1	2.0	2	1	0	2	2	2	0	IKI3	family
Nnf1	PF03980.14	gi|529076607|ref|YP_008375610.1|	-	0.038	14.4	3.4	0.14	12.6	3.2	2.0	2	0	0	2	2	2	0	Nnf1
TBCC_N	PF16752.5	gi|529076607|ref|YP_008375610.1|	-	0.16	12.4	0.8	0.33	11.4	0.8	1.5	1	0	0	1	1	1	0	Tubulin-specific	chaperone	C	N-terminal	domain
Integrase_Zn	PF02022.19	gi|529076607|ref|YP_008375610.1|	-	0.23	11.5	0.1	0.42	10.6	0.1	1.4	1	0	0	1	1	1	0	Integrase	Zinc	binding	domain
THOC7	PF05615.13	gi|529076607|ref|YP_008375610.1|	-	1.5	9.1	7.1	0.91	9.8	4.4	2.0	1	1	1	2	2	2	0	Tho	complex	subunit	7
PspB	PF06667.12	gi|529076607|ref|YP_008375610.1|	-	3.5	7.8	4.1	30	4.8	0.1	2.5	2	0	0	2	2	2	0	Phage	shock	protein	B
Frag1	PF10277.9	gi|529076608|ref|YP_008375611.1|	-	0.046	13.3	0.1	0.046	13.3	0.1	1.0	1	0	0	1	1	1	0	Frag1/DRAM/Sfk1	family
DUF211	PF02680.14	gi|529076609|ref|YP_008375612.1|	-	3.5e-34	116.8	2.4	3.9e-34	116.7	2.4	1.0	1	0	0	1	1	1	1	Uncharacterized	ArCR,	COG1888
VIT1	PF01988.19	gi|529076610|ref|YP_008375613.1|	-	8.3e-11	42.2	8.3	1.3e-10	41.5	0.6	2.1	2	0	0	2	2	2	2	VIT	family
Adeno_E3	PF06040.11	gi|529076610|ref|YP_008375613.1|	-	0.56	10.4	2.0	2.7	8.2	1.2	2.2	2	0	0	2	2	2	0	Adenovirus	E3	protein
UPF0016	PF01169.19	gi|529076610|ref|YP_008375613.1|	-	1.3	9.4	13.8	1.5	9.2	3.4	2.9	2	1	1	3	3	3	0	Uncharacterized	protein	family	UPF0016
DUF2207	PF09972.9	gi|529076610|ref|YP_008375613.1|	-	2.6	6.7	6.2	30	3.2	6.2	2.5	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
PUA	PF01472.20	gi|529076611|ref|YP_008375614.1|	-	6.1e-17	61.4	2.3	1.1e-16	60.5	2.3	1.4	1	0	0	1	1	1	1	PUA	domain
UPF0113	PF03657.13	gi|529076611|ref|YP_008375614.1|	-	0.0045	17.2	0.1	0.007	16.6	0.1	1.3	1	0	0	1	1	1	1	UPF0113	PUA	domain
RNB	PF00773.19	gi|529076612|ref|YP_008375615.1|	-	6.1e-81	272.3	0.0	1.2e-79	268.1	0.0	2.0	1	1	0	1	1	1	1	RNB	domain
Clp_N	PF02861.20	gi|529076612|ref|YP_008375615.1|	-	0.11	12.6	0.2	25	5.1	0.1	3.2	3	0	0	3	3	3	0	Clp	amino	terminal	domain,	pathogenicity	island	component
SQS_PSY	PF00494.19	gi|529076614|ref|YP_008375617.1|	-	3.9e-61	206.8	7.1	4.9e-61	206.5	7.1	1.0	1	0	0	1	1	1	1	Squalene/phytoene	synthase
SepF	PF04472.12	gi|529076615|ref|YP_008375618.1|	-	2.2e-14	53.5	1.3	2.8e-14	53.1	1.3	1.1	1	0	0	1	1	1	1	Cell	division	protein	SepF
Lar_N	PF09861.9	gi|529076615|ref|YP_008375618.1|	-	0.013	14.7	0.1	0.015	14.4	0.1	1.2	1	0	0	1	1	1	0	Lactate	racemase	N-terminal	domain
Rx_N	PF18052.1	gi|529076615|ref|YP_008375618.1|	-	0.1	12.9	0.1	0.13	12.5	0.1	1.2	1	0	0	1	1	1	0	Rx	N-terminal	domain
DUF5611	PF18446.1	gi|529076616|ref|YP_008375619.1|	-	1.3e-29	103.1	0.2	1.5e-29	102.9	0.2	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5611)
DUF4989	PF16379.5	gi|529076616|ref|YP_008375619.1|	-	0.0025	17.2	0.0	0.0028	17.0	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4989)
DUF5517	PF17639.2	gi|529076616|ref|YP_008375619.1|	-	0.062	13.6	0.0	0.084	13.2	0.0	1.4	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF5517)
Zn-ribbon_8	PF09723.10	gi|529076617|ref|YP_008375620.1|	-	0.0021	18.2	4.8	0.022	14.8	1.5	2.5	2	0	0	2	2	2	1	Zinc	ribbon	domain
HypA	PF01155.19	gi|529076617|ref|YP_008375620.1|	-	0.018	15.1	2.4	0.2	11.7	0.1	2.2	2	0	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc-ribbons_6	PF07191.12	gi|529076617|ref|YP_008375620.1|	-	0.034	14.1	1.0	0.2	11.7	0.2	2.1	2	0	0	2	2	2	0	zinc-ribbons
RNHCP	PF12647.7	gi|529076617|ref|YP_008375620.1|	-	0.047	13.7	1.5	0.18	11.8	0.2	2.1	2	0	0	2	2	2	0	RNHCP	domain
DZR	PF12773.7	gi|529076617|ref|YP_008375620.1|	-	0.091	12.8	1.6	2	8.5	0.4	2.3	2	0	0	2	2	2	0	Double	zinc	ribbon
DUF1451	PF07295.11	gi|529076617|ref|YP_008375620.1|	-	0.097	12.7	3.0	0.37	10.8	0.7	2.4	2	1	0	2	2	2	0	Zinc-ribbon	containing	domain
Cytochrom_c3_2	PF14537.6	gi|529076617|ref|YP_008375620.1|	-	0.14	12.7	0.6	1.5	9.4	0.1	2.3	2	0	0	2	2	2	0	Cytochrome	c3
zf_UBZ	PF18439.1	gi|529076617|ref|YP_008375620.1|	-	0.22	11.1	4.4	24	4.6	0.1	3.3	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
zf-IS66	PF13005.7	gi|529076617|ref|YP_008375620.1|	-	0.45	10.9	5.0	16	6.0	0.2	3.5	3	0	0	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
TF_Zn_Ribbon	PF08271.12	gi|529076617|ref|YP_008375620.1|	-	0.5	9.9	7.7	21	4.7	0.1	4.5	3	1	0	3	3	3	0	TFIIB	zinc-binding
RNA_POL_M_15KD	PF02150.16	gi|529076617|ref|YP_008375620.1|	-	0.62	10.0	3.7	5.4	7.0	0.1	3.1	3	0	0	3	3	3	0	RNA	polymerases	M/15	Kd	subunit
DUF1660	PF07874.11	gi|529076617|ref|YP_008375620.1|	-	2.2	8.8	3.7	2.3	8.8	0.4	2.6	2	1	0	2	2	2	0	Prophage	protein	(DUF1660)
Zn_Tnp_IS1595	PF12760.7	gi|529076617|ref|YP_008375620.1|	-	3.6	7.6	7.1	14	5.7	0.4	3.1	2	1	0	3	3	3	0	Transposase	zinc-ribbon	domain
Rubredoxin_2	PF18073.1	gi|529076617|ref|YP_008375620.1|	-	5.1	6.9	10.9	1.3	8.8	0.1	3.2	3	0	0	3	3	3	0	Rubredoxin	metal	binding	domain
Baculo_LEF5_C	PF11792.8	gi|529076617|ref|YP_008375620.1|	-	7	6.4	5.9	1.3	8.7	1.1	2.1	2	0	0	2	2	2	0	Baculoviridae	late	expression	factor	5	C-terminal	domain
MarR_2	PF12802.7	gi|529076618|ref|YP_008375621.1|	-	0.0038	17.1	0.1	0.0059	16.5	0.1	1.3	1	0	0	1	1	1	1	MarR	family
GntR	PF00392.21	gi|529076618|ref|YP_008375621.1|	-	0.0041	16.8	0.0	0.0098	15.5	0.0	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_20	PF12840.7	gi|529076618|ref|YP_008375621.1|	-	0.0075	16.3	0.1	0.01	15.9	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
TFIIE_alpha	PF02002.17	gi|529076618|ref|YP_008375621.1|	-	0.1	12.4	0.4	0.17	11.8	0.3	1.3	1	1	0	1	1	1	0	TFIIE	alpha	subunit
Rrf2	PF02082.20	gi|529076618|ref|YP_008375621.1|	-	0.11	12.8	0.0	0.15	12.4	0.0	1.1	1	0	0	1	1	1	0	Transcriptional	regulator
Yip1	PF04893.17	gi|529076621|ref|YP_008375624.1|	-	8.6e-12	45.1	19.1	1.1e-11	44.8	19.1	1.1	1	0	0	1	1	1	1	Yip1	domain
Peptidase_M32	PF02074.15	gi|529076622|ref|YP_008375625.1|	-	4.2e-174	579.9	0.0	4.8e-174	579.7	0.0	1.0	1	0	0	1	1	1	1	Carboxypeptidase	Taq	(M32)	metallopeptidase
DUF2064	PF09837.9	gi|529076623|ref|YP_008375626.1|	-	0.06	13.2	0.1	0.1	12.4	0.1	1.5	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2064)
RHH_1	PF01402.21	gi|529076623|ref|YP_008375626.1|	-	0.086	12.8	1.1	0.83	9.7	0.0	2.5	2	1	1	3	3	3	0	Ribbon-helix-helix	protein,	copG	family
Phage_integrase	PF00589.22	gi|529076624|ref|YP_008375627.1|	-	1e-15	57.9	0.0	1.8e-15	57.2	0.0	1.3	1	0	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|529076624|ref|YP_008375627.1|	-	9.4e-09	35.5	0.1	1.8e-08	34.5	0.1	1.5	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|529076624|ref|YP_008375627.1|	-	2.5e-05	24.6	0.0	5.9e-05	23.5	0.0	1.6	1	1	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_integr_3	PF16795.5	gi|529076624|ref|YP_008375627.1|	-	0.072	13.0	0.0	0.36	10.7	0.0	2.0	2	0	0	2	2	2	0	Archaeal	phage	integrase
Phage_int_SAM_5	PF13102.6	gi|529076624|ref|YP_008375627.1|	-	0.15	12.4	0.0	0.49	10.8	0.0	1.9	1	1	0	1	1	1	0	Phage	integrase	SAM-like	domain
ABC_tran	PF00005.27	gi|529076625|ref|YP_008375628.1|	-	2.3e-30	105.9	0.0	3.1e-30	105.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529076625|ref|YP_008375628.1|	-	1.5e-12	48.0	0.0	4.6e-05	23.4	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|529076625|ref|YP_008375628.1|	-	4.4e-05	23.0	0.0	0.15	11.4	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_25	PF13481.6	gi|529076625|ref|YP_008375628.1|	-	0.0002	21.0	0.2	0.00056	19.6	0.2	1.9	1	1	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|529076625|ref|YP_008375628.1|	-	0.00028	20.6	0.0	0.38	10.5	0.0	2.3	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_29	PF13555.6	gi|529076625|ref|YP_008375628.1|	-	0.00088	19.0	0.0	0.0019	17.9	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_28	PF13521.6	gi|529076625|ref|YP_008375628.1|	-	0.0033	17.7	0.7	0.028	14.6	0.7	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|529076625|ref|YP_008375628.1|	-	0.0034	17.8	0.3	0.0066	16.8	0.2	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|529076625|ref|YP_008375628.1|	-	0.0066	17.0	0.1	0.012	16.2	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
MMR_HSR1	PF01926.23	gi|529076625|ref|YP_008375628.1|	-	0.012	15.7	0.0	0.038	14.1	0.0	1.8	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
RsgA_GTPase	PF03193.16	gi|529076625|ref|YP_008375628.1|	-	0.016	15.1	0.0	0.034	14.0	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
AAA_24	PF13479.6	gi|529076625|ref|YP_008375628.1|	-	0.023	14.4	0.0	0.034	13.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_14	PF13173.6	gi|529076625|ref|YP_008375628.1|	-	0.069	13.2	0.0	0.12	12.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
SbcCD_C	PF13558.6	gi|529076625|ref|YP_008375628.1|	-	0.084	13.1	0.7	0.42	10.9	0.7	2.0	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_30	PF13604.6	gi|529076625|ref|YP_008375628.1|	-	0.089	12.5	0.0	0.13	11.9	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|529076625|ref|YP_008375628.1|	-	0.17	12.5	0.0	0.89	10.1	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
DLIC	PF05783.11	gi|529076625|ref|YP_008375628.1|	-	0.17	10.7	0.0	0.25	10.1	0.0	1.2	1	0	0	1	1	1	0	Dynein	light	intermediate	chain	(DLIC)
AAA_33	PF13671.6	gi|529076625|ref|YP_008375628.1|	-	0.18	12.0	0.3	1.2	9.3	0.3	2.4	1	1	0	1	1	1	0	AAA	domain
AAA_27	PF13514.6	gi|529076625|ref|YP_008375628.1|	-	0.19	11.3	0.1	0.53	9.9	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
CbiQ	PF02361.16	gi|529076626|ref|YP_008375629.1|	-	8e-28	97.5	11.2	1.1e-27	97.1	11.2	1.1	1	0	0	1	1	1	1	Cobalt	transport	protein
Ilm1	PF10311.9	gi|529076626|ref|YP_008375629.1|	-	0.076	12.7	0.1	0.17	11.5	0.1	1.6	1	1	0	1	1	1	0	Increased	loss	of	mitochondrial	DNA	protein	1
CbiM	PF01891.16	gi|529076627|ref|YP_008375630.1|	-	1.2e-53	182.1	27.8	1.2e-53	182.1	27.8	1.9	2	0	0	2	2	2	1	Cobalt	uptake	substrate-specific	transmembrane	region
PDGLE	PF13190.6	gi|529076627|ref|YP_008375630.1|	-	9.3e-09	35.1	0.8	4.5e-08	32.9	0.0	2.5	2	0	0	2	2	2	1	PDGLE	domain
NikR_C	PF08753.11	gi|529076628|ref|YP_008375631.1|	-	3.4e-25	88.0	5.0	5e-25	87.5	5.0	1.3	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.21	gi|529076628|ref|YP_008375631.1|	-	8.9e-06	25.5	0.0	0.00021	21.1	0.0	2.4	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
TrmB	PF01978.19	gi|529076629|ref|YP_008375632.1|	-	6.1e-20	70.9	0.3	4.1e-19	68.2	0.1	2.2	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|529076629|ref|YP_008375632.1|	-	0.0033	17.2	0.7	0.013	15.3	0.0	2.5	4	0	0	4	4	4	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|529076629|ref|YP_008375632.1|	-	0.0054	16.6	0.1	0.023	14.6	0.1	2.1	2	0	0	2	2	2	1	MarR	family
DUF2250	PF10007.9	gi|529076629|ref|YP_008375632.1|	-	0.041	14.0	0.0	0.091	12.9	0.0	1.6	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Amino_oxidase	PF01593.24	gi|529076631|ref|YP_008375634.1|	-	4.6e-17	62.4	4.1	2.6e-11	43.5	0.7	2.1	1	1	1	2	2	2	2	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|529076631|ref|YP_008375634.1|	-	1.9e-12	47.2	0.6	4.8e-12	45.9	0.3	1.9	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|529076631|ref|YP_008375634.1|	-	3.5e-12	46.6	3.7	1.5e-07	31.4	0.6	2.1	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|529076631|ref|YP_008375634.1|	-	0.0005	19.4	2.8	0.0043	16.3	1.1	2.0	1	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|529076631|ref|YP_008375634.1|	-	0.00086	18.8	0.5	0.0013	18.2	0.5	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|529076631|ref|YP_008375634.1|	-	0.0061	15.3	0.5	2.7	6.6	1.0	2.1	2	0	0	2	2	2	2	HI0933-like	protein
NAD_binding_9	PF13454.6	gi|529076631|ref|YP_008375634.1|	-	0.015	15.3	2.2	3.6	7.6	0.1	2.4	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Pyr_redox_3	PF13738.6	gi|529076631|ref|YP_008375634.1|	-	0.016	14.5	0.2	2	7.6	0.7	2.1	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.14	gi|529076631|ref|YP_008375634.1|	-	0.053	12.4	1.1	0.079	11.8	1.1	1.2	1	0	0	1	1	1	0	Tryptophan	halogenase
FAD_binding_3	PF01494.19	gi|529076631|ref|YP_008375634.1|	-	0.064	12.5	0.9	0.088	12.0	0.4	1.4	2	0	0	2	2	2	0	FAD	binding	domain
DDE_Tnp_IS1595	PF12762.7	gi|529076634|ref|YP_008375637.1|	-	1.2e-09	38.4	0.1	1.2e-09	38.3	0.1	1.1	1	0	0	1	1	1	1	ISXO2-like	transposase	domain
Lar_restr_allev	PF14354.6	gi|529076636|ref|YP_008375639.1|	-	0.00018	21.8	0.4	0.00019	21.8	0.4	1.1	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
RNA_POL_M_15KD	PF02150.16	gi|529076636|ref|YP_008375639.1|	-	0.00028	20.7	0.2	0.00046	20.0	0.2	1.4	1	1	0	1	1	1	1	RNA	polymerases	M/15	Kd	subunit
PhnA_Zn_Ribbon	PF08274.12	gi|529076636|ref|YP_008375639.1|	-	0.00033	20.5	1.2	0.00081	19.3	1.2	1.7	1	1	0	1	1	1	1	PhnA	Zinc-Ribbon
zinc_ribbon_2	PF13240.6	gi|529076636|ref|YP_008375639.1|	-	0.00073	19.2	0.4	0.2	11.4	0.1	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|529076636|ref|YP_008375639.1|	-	0.001	18.5	1.9	0.0013	18.2	1.9	1.2	1	0	0	1	1	1	1	TFIIB	zinc-binding
zinc_ribbon_5	PF13719.6	gi|529076636|ref|YP_008375639.1|	-	0.0011	18.6	0.3	0.0014	18.3	0.3	1.1	1	0	0	1	1	1	1	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.13	gi|529076636|ref|YP_008375639.1|	-	0.0017	18.0	1.8	0.022	14.4	1.9	2.0	1	1	1	2	2	2	2	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf_UBZ	PF18439.1	gi|529076636|ref|YP_008375639.1|	-	0.0021	17.6	0.6	0.26	10.9	0.1	2.4	2	0	0	2	2	2	1	Ubiquitin-Binding	Zinc	Finger
zf-ribbon_3	PF13248.6	gi|529076636|ref|YP_008375639.1|	-	0.0024	17.2	0.3	0.13	11.7	0.0	2.1	2	0	0	2	2	2	1	zinc-ribbon	domain
zf-TFIIB	PF13453.6	gi|529076636|ref|YP_008375639.1|	-	0.0061	15.9	0.3	2.1	7.7	0.1	2.2	2	0	0	2	2	2	2	Transcription	factor	zinc-finger
zinc-ribbons_6	PF07191.12	gi|529076636|ref|YP_008375639.1|	-	0.0081	16.1	0.1	0.01	15.8	0.1	1.2	1	0	0	1	1	1	1	zinc-ribbons
Zn-ribbon_8	PF09723.10	gi|529076636|ref|YP_008375639.1|	-	0.0087	16.2	3.2	0.85	9.8	0.7	2.1	1	1	0	2	2	2	1	Zinc	ribbon	domain
DZR	PF12773.7	gi|529076636|ref|YP_008375639.1|	-	0.012	15.6	0.6	0.063	13.3	0.6	1.8	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-HYPF	PF07503.12	gi|529076636|ref|YP_008375639.1|	-	0.013	15.3	0.1	2.7	7.9	0.0	2.1	2	0	0	2	2	2	0	HypF	finger
zf-NADH-PPase	PF09297.11	gi|529076636|ref|YP_008375639.1|	-	0.013	15.1	1.0	4.3	7.1	0.1	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|529076636|ref|YP_008375639.1|	-	0.017	14.9	0.6	0.71	9.7	0.1	2.1	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Nudix_N_2	PF14803.6	gi|529076636|ref|YP_008375639.1|	-	0.021	14.8	0.7	2.2	8.3	0.1	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
CpXC	PF14353.6	gi|529076636|ref|YP_008375639.1|	-	0.024	14.6	0.4	3.9	7.5	0.0	2.0	2	0	0	2	2	2	0	CpXC	protein
HypA	PF01155.19	gi|529076636|ref|YP_008375639.1|	-	0.03	14.3	0.2	0.033	14.2	0.2	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
UPF0547	PF10571.9	gi|529076636|ref|YP_008375639.1|	-	0.037	14.1	2.1	0.18	11.9	0.2	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Elf1	PF05129.13	gi|529076636|ref|YP_008375639.1|	-	0.039	14.0	0.1	0.05	13.6	0.1	1.2	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
Cys_rich_CPXG	PF14255.6	gi|529076636|ref|YP_008375639.1|	-	0.046	13.6	2.8	0.14	12.1	2.8	1.8	1	1	0	1	1	1	0	Cysteine-rich	CPXCG
zf-tcix	PF14952.6	gi|529076636|ref|YP_008375639.1|	-	0.051	13.2	1.2	2.5	7.8	0.1	2.1	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
YacG	PF03884.14	gi|529076636|ref|YP_008375639.1|	-	0.059	13.1	0.4	2.1	8.1	0.1	2.1	2	0	0	2	2	2	0	DNA	gyrase	inhibitor	YacG
Ribosomal_S27e	PF01667.17	gi|529076636|ref|YP_008375639.1|	-	0.097	12.4	0.5	0.15	11.8	0.5	1.2	1	0	0	1	1	1	0	Ribosomal	protein	S27
zf-IS66	PF13005.7	gi|529076636|ref|YP_008375639.1|	-	0.1	13.0	3.6	2.8	8.4	3.6	2.2	1	1	0	1	1	1	0	zinc-finger	binding	domain	of	transposase	IS66
YhfH	PF14149.6	gi|529076636|ref|YP_008375639.1|	-	0.11	12.5	1.7	8	6.5	0.1	2.2	2	0	0	2	2	2	0	YhfH-like	protein
ADD_ATRX	PF17981.1	gi|529076636|ref|YP_008375639.1|	-	0.11	12.4	0.3	0.47	10.4	0.0	1.8	1	1	1	2	2	2	0	Cysteine	Rich	ADD	domain
OrfB_Zn_ribbon	PF07282.11	gi|529076636|ref|YP_008375639.1|	-	0.15	12.0	0.6	0.25	11.3	0.6	1.4	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Ogr_Delta	PF04606.12	gi|529076636|ref|YP_008375639.1|	-	0.15	12.0	1.0	3.5	7.7	0.3	2.1	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
DUF1451	PF07295.11	gi|529076636|ref|YP_008375639.1|	-	0.17	11.9	0.7	0.21	11.6	0.7	1.2	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
zf-RING_7	PF02591.15	gi|529076636|ref|YP_008375639.1|	-	0.18	12.0	1.7	9.5	6.5	0.2	2.3	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
DUF983	PF06170.12	gi|529076636|ref|YP_008375639.1|	-	0.39	11.2	1.6	11	6.5	0.2	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF983)
DUF1610	PF07754.11	gi|529076636|ref|YP_008375639.1|	-	0.41	10.6	6.0	4.7	7.3	1.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
Prok-RING_1	PF14446.6	gi|529076636|ref|YP_008375639.1|	-	0.46	10.4	5.8	1.1	9.3	5.8	1.6	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
Gly-zipper_YMGG	PF13441.6	gi|529076638|ref|YP_008375641.1|	-	1.2e-06	28.1	14.5	1.6e-06	27.7	14.5	1.2	1	0	0	1	1	1	1	YMGG-like	Gly-zipper
Rick_17kDa_Anti	PF05433.15	gi|529076638|ref|YP_008375641.1|	-	0.00028	20.7	16.1	0.00041	20.1	16.1	1.2	1	0	0	1	1	1	1	Glycine	zipper	2TM	domain
Gly-zipper_Omp	PF13488.6	gi|529076638|ref|YP_008375641.1|	-	0.0015	18.5	20.8	0.0048	16.9	20.9	1.7	1	1	1	2	2	2	2	Glycine	zipper
Gly-zipper_OmpA	PF13436.6	gi|529076638|ref|YP_008375641.1|	-	0.0015	18.2	14.1	0.0026	17.5	14.1	1.4	1	0	0	1	1	1	1	Glycine-zipper	domain
EspB	PF05802.11	gi|529076638|ref|YP_008375641.1|	-	0.14	12.1	4.5	0.16	12.0	4.5	1.1	1	0	0	1	1	1	0	Enterobacterial	EspB	protein
PT-VENN	PF04829.13	gi|529076638|ref|YP_008375641.1|	-	0.95	9.6	11.6	3	8.0	11.5	1.8	1	1	0	1	1	1	0	Pre-toxin	domain	with	VENN	motif
DUF1269	PF06897.12	gi|529076638|ref|YP_008375641.1|	-	1.1	9.6	7.8	1.8	8.9	7.8	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1269)
TraT	PF05818.12	gi|529076638|ref|YP_008375641.1|	-	2.3	7.8	4.7	2.5	7.7	4.7	1.1	1	0	0	1	1	1	0	Enterobacterial	TraT	complement	resistance	protein
Chorismate_synt	PF01264.21	gi|529076639|ref|YP_008375642.1|	-	4.5e-115	383.8	0.0	5.3e-115	383.6	0.0	1.0	1	0	0	1	1	1	1	Chorismate	synthase
UDG	PF03167.19	gi|529076641|ref|YP_008375644.1|	-	3.8e-22	78.9	0.0	4.5e-22	78.7	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
CBS	PF00571.28	gi|529076642|ref|YP_008375645.1|	-	1.2e-25	89.7	5.4	1.7e-14	54.0	1.0	2.1	2	0	0	2	2	2	2	CBS	domain
DUF2064	PF09837.9	gi|529076643|ref|YP_008375646.1|	-	5.4e-05	23.0	0.0	8.7e-05	22.3	0.0	1.4	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2064)
AAA	PF00004.29	gi|529076644|ref|YP_008375647.1|	-	2.4e-100	332.2	0.0	7e-49	165.6	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|529076644|ref|YP_008375647.1|	-	6.6e-29	99.5	4.9	4e-14	52.2	0.5	2.7	2	0	0	2	2	2	2	AAA+	lid	domain
CDC48_N	PF02359.18	gi|529076644|ref|YP_008375647.1|	-	3.6e-25	87.9	0.1	2.1e-24	85.5	0.2	2.2	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_2	PF07724.14	gi|529076644|ref|YP_008375647.1|	-	3.1e-18	66.5	0.1	3.7e-09	36.9	0.0	2.4	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|529076644|ref|YP_008375647.1|	-	1.6e-16	60.5	0.0	1.1e-07	31.7	0.0	2.8	3	0	0	3	3	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
CDC48_2	PF02933.17	gi|529076644|ref|YP_008375647.1|	-	7e-15	54.6	0.9	1.8e-14	53.3	0.9	1.7	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_16	PF13191.6	gi|529076644|ref|YP_008375647.1|	-	2e-14	54.3	0.7	7.6e-06	26.4	0.0	4.1	3	2	0	4	4	4	2	AAA	ATPase	domain
AAA_22	PF13401.6	gi|529076644|ref|YP_008375647.1|	-	1.2e-11	45.0	0.4	0.00088	19.6	0.0	4.0	2	2	1	3	3	3	2	AAA	domain
AAA_33	PF13671.6	gi|529076644|ref|YP_008375647.1|	-	1.6e-10	41.3	0.1	0.00029	21.0	0.0	3.1	3	1	0	3	3	2	2	AAA	domain
AAA_5	PF07728.14	gi|529076644|ref|YP_008375647.1|	-	2e-10	40.8	1.6	0.0013	18.8	0.1	4.4	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_14	PF13173.6	gi|529076644|ref|YP_008375647.1|	-	2e-10	40.8	0.0	0.00095	19.2	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
TIP49	PF06068.13	gi|529076644|ref|YP_008375647.1|	-	3.1e-10	39.8	0.1	0.00021	20.6	0.0	2.7	3	0	0	3	3	2	2	TIP49	P-loop	domain
IstB_IS21	PF01695.17	gi|529076644|ref|YP_008375647.1|	-	4.4e-08	33.1	0.0	0.0019	18.0	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
RNA_helicase	PF00910.22	gi|529076644|ref|YP_008375647.1|	-	5e-08	33.3	0.0	0.018	15.4	0.0	2.6	2	0	0	2	2	2	2	RNA	helicase
AAA_18	PF13238.6	gi|529076644|ref|YP_008375647.1|	-	1e-07	32.5	0.0	0.024	15.2	0.0	3.3	2	1	0	2	2	2	2	AAA	domain
AAA_7	PF12775.7	gi|529076644|ref|YP_008375647.1|	-	1.6e-07	31.1	0.0	0.017	14.7	0.0	2.7	2	1	0	2	2	2	2	P-loop	containing	dynein	motor	region
AAA_28	PF13521.6	gi|529076644|ref|YP_008375647.1|	-	8.8e-07	29.3	0.0	0.052	13.8	0.0	2.9	2	0	0	2	2	2	2	AAA	domain
Mg_chelatase	PF01078.21	gi|529076644|ref|YP_008375647.1|	-	1.2e-06	28.0	0.3	0.037	13.4	0.0	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
TsaE	PF02367.17	gi|529076644|ref|YP_008375647.1|	-	1.7e-06	28.1	0.0	0.035	14.1	0.0	2.4	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Sigma54_activat	PF00158.26	gi|529076644|ref|YP_008375647.1|	-	2.7e-06	27.2	0.0	0.1	12.3	0.0	3.5	4	0	0	4	4	4	2	Sigma-54	interaction	domain
AAA_25	PF13481.6	gi|529076644|ref|YP_008375647.1|	-	2.9e-06	27.0	1.5	1.1	8.7	0.0	4.2	4	0	0	4	4	4	1	AAA	domain
AAA_3	PF07726.11	gi|529076644|ref|YP_008375647.1|	-	3.2e-06	27.0	0.0	0.035	14.0	0.0	2.7	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF815	PF05673.13	gi|529076644|ref|YP_008375647.1|	-	4.2e-06	26.1	0.0	0.009	15.2	0.0	2.9	2	1	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
ATPase	PF06745.13	gi|529076644|ref|YP_008375647.1|	-	6e-06	25.8	0.2	0.22	10.9	0.0	3.4	2	1	1	3	3	3	2	KaiC
AAA_24	PF13479.6	gi|529076644|ref|YP_008375647.1|	-	1e-05	25.3	0.0	0.072	12.8	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_30	PF13604.6	gi|529076644|ref|YP_008375647.1|	-	1.3e-05	25.0	0.0	0.24	11.1	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_11	PF13086.6	gi|529076644|ref|YP_008375647.1|	-	1.5e-05	24.9	0.0	0.14	12.0	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
NB-ARC	PF00931.22	gi|529076644|ref|YP_008375647.1|	-	2.5e-05	23.6	0.0	0.18	11.0	0.0	3.0	3	0	0	3	3	3	2	NB-ARC	domain
PhoH	PF02562.16	gi|529076644|ref|YP_008375647.1|	-	2.7e-05	23.7	0.1	0.079	12.4	0.0	2.3	2	0	0	2	2	2	2	PhoH-like	protein
ABC_tran	PF00005.27	gi|529076644|ref|YP_008375647.1|	-	3.2e-05	24.5	0.1	0.17	12.4	0.0	2.9	3	0	0	3	3	2	2	ABC	transporter
NACHT	PF05729.12	gi|529076644|ref|YP_008375647.1|	-	5.2e-05	23.2	0.1	0.49	10.3	0.0	3.5	4	0	0	4	4	3	2	NACHT	domain
DUF2075	PF09848.9	gi|529076644|ref|YP_008375647.1|	-	6.2e-05	22.4	0.0	0.37	10.0	0.0	2.4	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
Zeta_toxin	PF06414.12	gi|529076644|ref|YP_008375647.1|	-	0.00012	21.4	0.1	0.36	10.1	0.0	2.5	2	0	0	2	2	2	2	Zeta	toxin
Parvo_NS1	PF01057.17	gi|529076644|ref|YP_008375647.1|	-	0.00013	21.2	0.0	0.37	9.8	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
AAA_17	PF13207.6	gi|529076644|ref|YP_008375647.1|	-	0.00023	21.6	0.0	1.4	9.4	0.0	3.2	2	0	0	2	2	2	2	AAA	domain
Sigma54_activ_2	PF14532.6	gi|529076644|ref|YP_008375647.1|	-	0.0004	20.5	0.0	2.4	8.3	0.0	3.2	3	0	0	3	3	3	2	Sigma-54	interaction	domain
Bac_DnaA	PF00308.18	gi|529076644|ref|YP_008375647.1|	-	0.00047	20.1	0.0	0.18	11.6	0.0	2.6	2	0	0	2	2	2	1	Bacterial	dnaA	protein
NTPase_1	PF03266.15	gi|529076644|ref|YP_008375647.1|	-	0.00052	20.0	1.4	0.62	9.9	0.0	3.7	3	1	1	4	4	3	1	NTPase
AAA_19	PF13245.6	gi|529076644|ref|YP_008375647.1|	-	0.00073	19.9	1.6	0.98	9.7	0.1	2.8	2	2	1	3	3	2	2	AAA	domain
ATPase_2	PF01637.18	gi|529076644|ref|YP_008375647.1|	-	0.00097	19.1	0.0	0.36	10.7	0.0	3.0	2	2	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
ResIII	PF04851.15	gi|529076644|ref|YP_008375647.1|	-	0.0018	18.3	0.0	4.2	7.3	0.0	3.3	3	1	0	3	3	3	0	Type	III	restriction	enzyme,	res	subunit
T2SSE	PF00437.20	gi|529076644|ref|YP_008375647.1|	-	0.0086	15.2	0.0	2.9	6.9	0.0	2.6	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
Viral_helicase1	PF01443.18	gi|529076644|ref|YP_008375647.1|	-	0.02	14.6	0.0	2.5	7.8	0.0	2.3	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
Molydop_binding	PF01568.21	gi|529076644|ref|YP_008375647.1|	-	0.021	14.8	0.1	0.067	13.2	0.1	1.8	1	0	0	1	1	1	0	Molydopterin	dinucleotide	binding	domain
Vps4_C	PF09336.10	gi|529076644|ref|YP_008375647.1|	-	0.024	14.6	0.4	9.2	6.3	0.0	2.9	3	0	0	3	3	2	0	Vps4	C	terminal	oligomerisation	domain
AAA_29	PF13555.6	gi|529076644|ref|YP_008375647.1|	-	0.038	13.7	0.0	7.2	6.4	0.0	2.5	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
Cytidylate_kin	PF02224.18	gi|529076644|ref|YP_008375647.1|	-	0.039	13.7	0.1	12	5.6	0.0	2.6	2	0	0	2	2	2	0	Cytidylate	kinase
KAP_NTPase	PF07693.14	gi|529076644|ref|YP_008375647.1|	-	0.041	13.1	0.1	4.4	6.5	0.0	3.2	2	2	1	4	4	4	0	KAP	family	P-loop	domain
AFG1_ATPase	PF03969.16	gi|529076644|ref|YP_008375647.1|	-	0.044	12.7	0.0	3.9	6.3	0.0	2.5	2	0	0	2	2	2	0	AFG1-like	ATPase
Rad17	PF03215.15	gi|529076644|ref|YP_008375647.1|	-	0.048	13.6	0.0	6.8	6.6	0.0	2.4	2	0	0	2	2	2	0	Rad17	P-loop	domain
Zot	PF05707.12	gi|529076644|ref|YP_008375647.1|	-	0.052	13.2	0.0	4.7	6.8	0.0	3.1	2	1	1	3	3	3	0	Zonular	occludens	toxin	(Zot)
Guanylate_kin	PF00625.21	gi|529076644|ref|YP_008375647.1|	-	0.057	13.1	0.9	25	4.5	0.0	3.7	3	2	1	4	4	3	0	Guanylate	kinase
Torsin	PF06309.11	gi|529076644|ref|YP_008375647.1|	-	0.068	13.3	0.0	5.6	7.1	0.0	2.4	2	0	0	2	2	2	0	Torsin
CPT	PF07931.12	gi|529076644|ref|YP_008375647.1|	-	0.099	12.5	0.0	11	5.8	0.0	2.5	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
TniB	PF05621.11	gi|529076644|ref|YP_008375647.1|	-	0.11	11.9	0.0	14	5.0	0.0	2.9	3	0	0	3	3	3	0	Bacterial	TniB	protein
PIF1	PF05970.14	gi|529076644|ref|YP_008375647.1|	-	0.11	11.6	0.0	3	6.9	0.0	2.1	2	0	0	2	2	2	0	PIF1-like	helicase
Pantoate_transf	PF02548.15	gi|529076646|ref|YP_008375649.1|	-	4.3e-99	331.1	0.3	4.8e-99	331.0	0.3	1.0	1	0	0	1	1	1	1	Ketopantoate	hydroxymethyltransferase
PEP_mutase	PF13714.6	gi|529076646|ref|YP_008375649.1|	-	1.8e-08	34.1	1.5	4.7e-08	32.8	1.4	1.8	1	1	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
TxDE	PF18711.1	gi|529076646|ref|YP_008375649.1|	-	0.086	13.0	0.0	0.19	11.9	0.0	1.6	1	0	0	1	1	1	0	Toxoflavin-degrading	enzyme
HAD_2	PF13419.6	gi|529076648|ref|YP_008375651.1|	-	1.2e-16	61.3	0.0	8.7e-14	52.0	0.0	2.2	2	1	0	2	2	2	2	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|529076648|ref|YP_008375651.1|	-	6.2e-08	33.2	0.4	1.6e-05	25.3	0.0	2.1	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|529076648|ref|YP_008375651.1|	-	3.3e-05	23.8	0.2	0.0001	22.3	0.0	1.9	2	0	0	2	2	2	1	HAD-hyrolase-like
HAD	PF12710.7	gi|529076648|ref|YP_008375651.1|	-	0.0089	16.4	2.4	0.4	11.1	2.4	2.4	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Prenyltransf	PF01255.19	gi|529076649|ref|YP_008375652.1|	-	4.4e-25	88.5	0.0	7.6e-25	87.7	0.0	1.4	2	0	0	2	2	2	1	Putative	undecaprenyl	diphosphate	synthase
DUF92	PF01940.16	gi|529076650|ref|YP_008375653.1|	-	1.1e-49	169.0	17.7	1.1e-49	169.0	17.7	2.9	2	2	0	2	2	2	1	Integral	membrane	protein	DUF92
Acetyltransf_1	PF00583.25	gi|529076651|ref|YP_008375654.1|	-	8.6e-16	58.2	0.0	1e-15	58.0	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|529076651|ref|YP_008375654.1|	-	2.4e-15	56.6	0.0	2.8e-15	56.4	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|529076651|ref|YP_008375654.1|	-	9.7e-13	48.4	0.0	1.3e-12	47.9	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|529076651|ref|YP_008375654.1|	-	1.6e-07	31.2	0.0	2.8e-07	30.4	0.0	1.4	1	1	0	1	1	1	1	FR47-like	protein
Acetyltransf_6	PF13480.7	gi|529076651|ref|YP_008375654.1|	-	3.9e-07	30.3	0.5	5.2e-07	29.9	0.5	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
PanZ	PF12568.8	gi|529076651|ref|YP_008375654.1|	-	6e-05	22.8	0.0	7.2e-05	22.5	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain,	PanZ
Acetyltransf_4	PF13420.7	gi|529076651|ref|YP_008375654.1|	-	0.00046	20.3	0.0	0.0008	19.6	0.0	1.4	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|529076651|ref|YP_008375654.1|	-	0.0019	18.3	0.0	0.0051	16.9	0.0	1.7	2	1	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_13	PF13880.6	gi|529076651|ref|YP_008375654.1|	-	0.011	15.7	0.0	0.02	14.8	0.0	1.4	1	0	0	1	1	1	0	ESCO1/2	acetyl-transferase
Acetyltransf_3	PF13302.7	gi|529076651|ref|YP_008375654.1|	-	0.011	16.4	0.0	0.02	15.5	0.0	1.6	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|529076651|ref|YP_008375654.1|	-	0.079	13.1	0.1	0.18	11.9	0.1	1.7	1	1	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Acetyltransf_8	PF13523.6	gi|529076651|ref|YP_008375654.1|	-	0.089	12.5	0.1	0.17	11.5	0.0	1.5	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
Toprim_4	PF13662.6	gi|529076652|ref|YP_008375655.1|	-	2.5e-13	50.3	1.5	1.4e-11	44.7	0.3	2.9	1	1	1	2	2	2	2	Toprim	domain
Toprim_2	PF13155.6	gi|529076652|ref|YP_008375655.1|	-	7.6e-07	29.5	2.8	1.1e-06	28.9	0.1	2.7	3	0	0	3	3	3	1	Toprim-like
Toprim	PF01751.22	gi|529076652|ref|YP_008375655.1|	-	0.023	14.9	1.1	0.18	12.1	0.2	2.9	2	1	0	2	2	2	0	Toprim	domain
DUF3311	PF11755.8	gi|529076653|ref|YP_008375656.1|	-	1.3e-14	53.9	17.3	1.7e-14	53.5	17.3	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3311)
TRAP-gamma	PF07074.12	gi|529076653|ref|YP_008375656.1|	-	0.16	11.5	1.2	0.18	11.4	1.2	1.2	1	0	0	1	1	1	0	Translocon-associated	protein,	gamma	subunit	(TRAP-gamma)
SSF	PF00474.17	gi|529076654|ref|YP_008375657.1|	-	7e-46	156.9	24.8	9.4e-46	156.5	24.8	1.1	1	0	0	1	1	1	1	Sodium:solute	symporter	family
DUF3918	PF13056.6	gi|529076654|ref|YP_008375657.1|	-	7.9	6.2	15.5	0.92	9.2	0.1	3.7	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF3918)
Glutaredoxin	PF00462.24	gi|529076656|ref|YP_008375659.1|	-	1.3e-14	54.1	0.0	1.9e-14	53.6	0.0	1.2	1	0	0	1	1	1	1	Glutaredoxin
TetR_C_18	PF17923.1	gi|529076656|ref|YP_008375659.1|	-	0.084	13.4	0.3	0.2	12.2	0.1	1.6	1	1	1	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
BolA	PF01722.18	gi|529076657|ref|YP_008375660.1|	-	8.6e-16	58.0	0.0	9e-16	57.9	0.0	1.1	1	0	0	1	1	1	1	BolA-like	protein
tRNA-synt_1	PF00133.22	gi|529076658|ref|YP_008375661.1|	-	2.4e-123	412.5	0.1	5.7e-122	408.0	0.1	2.0	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|529076658|ref|YP_008375661.1|	-	9.8e-32	110.0	0.1	1.9e-31	109.0	0.1	1.5	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.11	gi|529076658|ref|YP_008375661.1|	-	2.2e-20	72.8	0.2	4.3e-10	38.9	0.0	3.7	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1_2	PF13603.6	gi|529076658|ref|YP_008375661.1|	-	4.6e-06	26.3	0.0	1.6e-05	24.5	0.0	1.8	1	1	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1f	PF01921.18	gi|529076658|ref|YP_008375661.1|	-	0.00017	20.6	0.0	0.003	16.5	0.0	2.2	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1e	PF01406.19	gi|529076658|ref|YP_008375661.1|	-	0.00082	18.8	0.0	0.14	11.4	0.0	2.7	2	1	0	2	2	2	1	tRNA	synthetases	class	I	(C)	catalytic	domain
Zn-ribbon_8	PF09723.10	gi|529076658|ref|YP_008375661.1|	-	0.002	18.2	4.2	0.017	15.3	1.0	2.7	2	0	0	2	2	2	1	Zinc	ribbon	domain
DZR	PF12773.7	gi|529076658|ref|YP_008375661.1|	-	0.025	14.6	0.4	0.64	10.1	0.1	2.3	2	0	0	2	2	2	0	Double	zinc	ribbon
DUF3047	PF11249.8	gi|529076658|ref|YP_008375661.1|	-	0.046	13.2	0.1	0.091	12.2	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3047)
zf-dskA_traR	PF01258.17	gi|529076658|ref|YP_008375661.1|	-	0.09	12.7	0.1	0.09	12.7	0.1	2.6	3	0	0	3	3	3	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
HypA	PF01155.19	gi|529076658|ref|YP_008375661.1|	-	0.16	12.0	0.2	3.2	7.8	0.0	2.4	2	0	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_9	PF14369.6	gi|529076658|ref|YP_008375661.1|	-	0.26	11.6	3.7	1.7	8.9	0.5	3.0	2	0	0	2	2	2	0	zinc-ribbon
TF_Zn_Ribbon	PF08271.12	gi|529076658|ref|YP_008375661.1|	-	0.36	10.4	4.0	4.5	6.9	0.1	4.0	4	0	0	4	4	4	0	TFIIB	zinc-binding
zf-TFIIB	PF13453.6	gi|529076658|ref|YP_008375661.1|	-	2.7	7.4	5.4	8.3	5.8	0.1	3.3	3	0	0	3	3	3	0	Transcription	factor	zinc-finger
DUF35_N	PF12172.8	gi|529076658|ref|YP_008375661.1|	-	8.6	6.4	9.2	3.9	7.5	0.9	3.2	3	0	0	3	3	3	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
TrkA_C	PF02080.21	gi|529076660|ref|YP_008375663.1|	-	0.00012	21.8	0.0	0.00039	20.2	0.0	1.9	1	0	0	1	1	1	1	TrkA-C	domain
CbiA	PF01656.23	gi|529076661|ref|YP_008375664.1|	-	1.6e-13	50.8	0.0	2.9e-13	50.0	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|529076661|ref|YP_008375664.1|	-	4.7e-11	42.6	2.3	0.00013	21.6	0.3	2.2	2	0	0	2	2	2	2	NUBPL	iron-transfer	P-loop	NTPase
AAA_31	PF13614.6	gi|529076661|ref|YP_008375664.1|	-	7.3e-08	32.5	0.2	5e-06	26.6	0.2	2.2	1	1	0	1	1	1	1	AAA	domain
ATPase	PF06745.13	gi|529076661|ref|YP_008375664.1|	-	3.9e-07	29.6	0.0	0.036	13.4	0.0	2.6	2	1	1	3	3	3	2	KaiC
AAA_26	PF13500.6	gi|529076661|ref|YP_008375664.1|	-	6.4e-07	29.4	0.5	0.00077	19.3	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
CBP_BcsQ	PF06564.12	gi|529076661|ref|YP_008375664.1|	-	0.00046	19.7	0.1	0.03	13.8	0.0	2.2	2	0	0	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
MipZ	PF09140.11	gi|529076661|ref|YP_008375664.1|	-	0.007	15.7	0.1	0.011	15.0	0.1	1.3	1	0	0	1	1	1	1	ATPase	MipZ
PRK	PF00485.18	gi|529076661|ref|YP_008375664.1|	-	0.016	15.0	0.0	0.026	14.3	0.0	1.3	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
NACHT	PF05729.12	gi|529076661|ref|YP_008375664.1|	-	0.037	13.9	0.0	6.7	6.6	0.0	2.4	2	0	0	2	2	2	0	NACHT	domain
AAA	PF00004.29	gi|529076661|ref|YP_008375664.1|	-	0.097	13.1	0.1	12	6.3	0.0	2.5	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
FTHFS	PF01268.19	gi|529076661|ref|YP_008375664.1|	-	0.13	10.5	0.1	0.18	9.9	0.1	1.2	1	0	0	1	1	1	0	Formate--tetrahydrofolate	ligase
ArsA_ATPase	PF02374.15	gi|529076661|ref|YP_008375664.1|	-	0.2	10.8	0.5	0.41	9.8	0.1	1.6	2	0	0	2	2	2	0	Anion-transporting	ATPase
PAXNEB	PF05625.11	gi|529076661|ref|YP_008375664.1|	-	0.21	10.7	0.0	0.7	9.0	0.0	1.7	2	0	0	2	2	2	0	PAXNEB	protein
CbiA	PF01656.23	gi|529076662|ref|YP_008375665.1|	-	5.4e-11	42.7	0.0	7e-11	42.3	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|529076662|ref|YP_008375665.1|	-	3e-10	40.0	2.0	3.4e-07	30.0	0.1	2.5	2	1	0	2	2	2	2	NUBPL	iron-transfer	P-loop	NTPase
AAA_31	PF13614.6	gi|529076662|ref|YP_008375665.1|	-	2.4e-06	27.6	0.1	2.7e-05	24.1	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|529076662|ref|YP_008375665.1|	-	1.4e-05	25.3	1.7	5.5e-05	23.3	1.7	2.0	1	1	0	1	1	1	1	AAA	domain
Fer4_NifH	PF00142.18	gi|529076662|ref|YP_008375665.1|	-	6.8e-05	22.4	0.3	0.15	11.4	0.0	2.1	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
CBP_BcsQ	PF06564.12	gi|529076662|ref|YP_008375665.1|	-	0.00036	20.1	0.2	0.24	10.8	0.0	2.2	2	0	0	2	2	2	2	Cellulose	biosynthesis	protein	BcsQ
RsgA_GTPase	PF03193.16	gi|529076662|ref|YP_008375665.1|	-	0.00057	19.8	0.4	0.24	11.3	0.0	2.2	2	0	0	2	2	2	2	RsgA	GTPase
MipZ	PF09140.11	gi|529076662|ref|YP_008375665.1|	-	0.0013	18.1	4.5	0.076	12.3	4.5	2.8	1	1	0	1	1	1	1	ATPase	MipZ
GTP_EFTU	PF00009.27	gi|529076662|ref|YP_008375665.1|	-	0.0041	16.7	0.1	0.0061	16.1	0.1	1.3	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
AAA_18	PF13238.6	gi|529076662|ref|YP_008375665.1|	-	0.012	16.2	0.2	0.057	14.0	0.2	2.3	1	1	0	1	1	1	0	AAA	domain
ArsA_ATPase	PF02374.15	gi|529076662|ref|YP_008375665.1|	-	0.012	14.8	1.4	0.03	13.5	0.2	1.9	2	0	0	2	2	2	0	Anion-transporting	ATPase
AAA_26	PF13500.6	gi|529076662|ref|YP_008375665.1|	-	0.017	14.9	1.0	1.4	8.7	0.1	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_24	PF13479.6	gi|529076662|ref|YP_008375665.1|	-	0.043	13.5	0.0	0.063	13.0	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
SKI	PF01202.22	gi|529076662|ref|YP_008375665.1|	-	0.085	13.0	0.1	0.25	11.4	0.1	1.8	1	0	0	1	1	1	0	Shikimate	kinase
AAA_25	PF13481.6	gi|529076662|ref|YP_008375665.1|	-	0.11	12.1	0.1	0.11	12.1	0.1	2.1	2	1	0	2	2	2	0	AAA	domain
CLP1_P	PF16575.5	gi|529076662|ref|YP_008375665.1|	-	0.14	11.9	0.2	14	5.4	0.0	2.2	2	0	0	2	2	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
DUF1611	PF07755.11	gi|529076662|ref|YP_008375665.1|	-	0.2	10.9	2.1	9.4	5.5	0.3	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1611_C)	P-loop	domain
CARDB	PF07705.11	gi|529076664|ref|YP_008375667.1|	-	5.7e-06	26.5	22.3	8.5e-06	26.0	0.1	4.6	3	1	2	5	5	5	3	CARDB
A2M	PF00207.22	gi|529076664|ref|YP_008375667.1|	-	0.00029	20.6	1.5	0.12	12.3	0.1	3.7	3	0	0	3	3	3	1	Alpha-2-macroglobulin	family
PEGA	PF08308.11	gi|529076664|ref|YP_008375667.1|	-	0.0071	16.2	6.0	0.86	9.5	0.0	5.2	5	1	0	5	5	5	1	PEGA	domain
DUF3426	PF11906.8	gi|529076664|ref|YP_008375667.1|	-	0.045	13.9	0.1	42	4.3	0.0	3.8	3	1	1	4	4	4	0	Protein	of	unknown	function	(DUF3426)
Cu_amine_oxidN1	PF07833.11	gi|529076664|ref|YP_008375667.1|	-	3.7	8.1	6.1	10	6.7	0.6	3.4	3	1	1	4	4	4	0	Copper	amine	oxidase	N-terminal	domain
MG4	PF17789.1	gi|529076664|ref|YP_008375667.1|	-	4	7.6	7.1	13	6.0	1.1	3.9	3	2	0	4	4	4	0	Macroglobulin	domain	MG4
YtkA	PF13115.6	gi|529076665|ref|YP_008375668.1|	-	0.01	16.4	0.2	0.023	15.3	0.2	1.6	1	0	0	1	1	1	0	YtkA-like
DUF87	PF01935.17	gi|529076666|ref|YP_008375669.1|	-	0.00014	22.1	0.0	0.00032	20.9	0.0	1.7	1	1	0	1	1	1	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|529076666|ref|YP_008375669.1|	-	0.00018	20.3	0.1	0.025	13.2	0.0	2.1	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
AAA_22	PF13401.6	gi|529076666|ref|YP_008375669.1|	-	0.062	13.6	0.0	17	5.7	0.0	2.7	3	0	0	3	3	3	0	AAA	domain
DUF3325	PF11804.8	gi|529076667|ref|YP_008375670.1|	-	0.11	12.7	0.3	0.21	11.8	0.0	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3325)
T2SSE	PF00437.20	gi|529076668|ref|YP_008375671.1|	-	2.2e-36	125.3	0.1	2.2e-36	125.3	0.1	1.5	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
ABC_tran	PF00005.27	gi|529076668|ref|YP_008375671.1|	-	0.00076	20.0	0.0	0.0013	19.2	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_16	PF13191.6	gi|529076668|ref|YP_008375671.1|	-	0.0015	18.9	0.9	0.023	15.1	0.1	2.6	2	0	0	2	2	2	1	AAA	ATPase	domain
cobW	PF02492.19	gi|529076668|ref|YP_008375671.1|	-	0.0027	17.3	0.0	0.0055	16.3	0.0	1.5	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_29	PF13555.6	gi|529076668|ref|YP_008375671.1|	-	0.013	15.2	0.2	0.029	14.1	0.2	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
TrwB_AAD_bind	PF10412.9	gi|529076668|ref|YP_008375671.1|	-	0.016	14.2	0.0	0.024	13.6	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
Zeta_toxin	PF06414.12	gi|529076668|ref|YP_008375671.1|	-	0.018	14.3	0.0	0.045	13.0	0.0	1.6	1	0	0	1	1	1	0	Zeta	toxin
AAA_14	PF13173.6	gi|529076668|ref|YP_008375671.1|	-	0.028	14.5	0.0	0.048	13.7	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|529076668|ref|YP_008375671.1|	-	0.041	13.2	0.4	0.16	11.3	0.1	2.0	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
AAA_22	PF13401.6	gi|529076668|ref|YP_008375671.1|	-	0.066	13.5	0.0	0.18	12.1	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|529076668|ref|YP_008375671.1|	-	0.07	12.8	0.3	0.15	11.7	0.3	1.5	1	0	0	1	1	1	0	AAA	domain
ATPase	PF06745.13	gi|529076668|ref|YP_008375671.1|	-	0.11	11.8	0.0	0.19	11.0	0.0	1.3	1	0	0	1	1	1	0	KaiC
AAA_7	PF12775.7	gi|529076668|ref|YP_008375671.1|	-	0.21	11.1	0.0	0.33	10.4	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
T2SSF	PF00482.23	gi|529076669|ref|YP_008375672.1|	-	1.2e-05	25.3	3.8	2.2e-05	24.4	0.2	2.6	2	1	0	2	2	2	1	Type	II	secretion	system	(T2SS),	protein	F
VbhA	PF18495.1	gi|529076671|ref|YP_008375674.1|	-	0.069	13.0	3.0	0.12	12.2	0.1	3.1	3	0	0	3	3	3	0	Antitoxin	VbhA
PhageP22-tail	PF09251.10	gi|529076673|ref|YP_008375676.1|	-	0.035	12.5	0.1	0.044	12.2	0.1	1.1	1	0	0	1	1	1	0	Salmonella	phage	P22	tail-spike
Ashwin	PF15323.6	gi|529076673|ref|YP_008375676.1|	-	0.064	13.3	0.0	0.087	12.8	0.0	1.1	1	0	0	1	1	1	0	Developmental	protein
ABC_tran_CTD	PF16326.5	gi|529076674|ref|YP_008375677.1|	-	3.7e-06	27.1	3.8	6.8e-06	26.2	0.8	2.2	1	1	1	2	2	2	1	ABC	transporter	C-terminal	domain
BLOC1_2	PF10046.9	gi|529076674|ref|YP_008375677.1|	-	1.3e-05	25.4	0.6	0.00028	21.1	0.1	2.3	1	1	1	2	2	2	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Sugarporin_N	PF11471.8	gi|529076674|ref|YP_008375677.1|	-	2.3e-05	24.3	13.3	0.0009	19.1	0.7	3.3	3	0	0	3	3	3	2	Maltoporin	periplasmic	N-terminal	extension
DUF745	PF05335.13	gi|529076674|ref|YP_008375677.1|	-	0.00041	20.1	2.8	0.00057	19.6	2.6	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF745)
NPV_P10	PF05531.12	gi|529076674|ref|YP_008375677.1|	-	0.0009	19.7	1.7	0.062	13.8	0.2	2.5	1	1	1	2	2	2	1	Nucleopolyhedrovirus	P10	protein
XhlA	PF10779.9	gi|529076674|ref|YP_008375677.1|	-	0.0011	19.2	2.8	0.48	10.7	0.1	3.0	2	1	1	3	3	3	1	Haemolysin	XhlA
CCDC53	PF10152.9	gi|529076674|ref|YP_008375677.1|	-	0.0014	19.0	5.4	0.0019	18.6	4.4	1.7	1	1	0	1	1	1	1	Subunit	CCDC53	of	WASH	complex
SKA1	PF07160.12	gi|529076674|ref|YP_008375677.1|	-	0.0034	17.3	0.1	0.0053	16.6	0.1	1.3	1	1	0	1	1	1	1	Spindle	and	kinetochore-associated	protein	1
Dynactin_p22	PF07426.11	gi|529076674|ref|YP_008375677.1|	-	0.0054	16.6	2.1	3	7.7	0.1	3.0	2	1	1	3	3	3	1	Dynactin	subunit	p22
SlyX	PF04102.12	gi|529076674|ref|YP_008375677.1|	-	0.0064	17.1	1.6	0.0064	17.1	1.6	2.8	2	1	0	2	2	2	1	SlyX
CLZ	PF16526.5	gi|529076674|ref|YP_008375677.1|	-	0.0087	16.4	4.1	0.34	11.3	0.4	2.8	1	1	1	2	2	2	1	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
Tropomyosin	PF00261.20	gi|529076674|ref|YP_008375677.1|	-	0.012	15.0	4.4	0.022	14.1	4.4	1.5	1	1	0	1	1	1	0	Tropomyosin
DUF16	PF01519.16	gi|529076674|ref|YP_008375677.1|	-	0.012	16.1	0.1	0.021	15.3	0.1	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF16
DUF3540	PF12059.8	gi|529076674|ref|YP_008375677.1|	-	0.013	15.4	0.7	0.015	15.1	0.7	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3540)
Laminin_II	PF06009.12	gi|529076674|ref|YP_008375677.1|	-	0.014	15.4	0.1	0.023	14.7	0.1	1.3	1	0	0	1	1	1	0	Laminin	Domain	II
HSBP1	PF06825.12	gi|529076674|ref|YP_008375677.1|	-	0.014	15.2	0.1	1	9.3	0.0	2.5	2	0	0	2	2	2	0	Heat	shock	factor	binding	protein	1
FlaC_arch	PF05377.11	gi|529076674|ref|YP_008375677.1|	-	0.028	14.8	0.4	0.64	10.4	0.0	2.8	3	0	0	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
TRAF_BIRC3_bd	PF16673.5	gi|529076674|ref|YP_008375677.1|	-	0.031	14.1	1.4	0.063	13.1	0.2	1.9	2	0	0	2	2	2	0	TNF	receptor-associated	factor	BIRC3	binding	domain
Cluap1	PF10234.9	gi|529076674|ref|YP_008375677.1|	-	0.039	13.3	0.7	0.052	13.0	0.7	1.1	1	0	0	1	1	1	0	Clusterin-associated	protein-1
DUF3584	PF12128.8	gi|529076674|ref|YP_008375677.1|	-	0.051	11.1	3.2	0.061	10.8	3.2	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
DUF1664	PF07889.12	gi|529076674|ref|YP_008375677.1|	-	0.052	13.6	0.1	0.091	12.8	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Prefoldin_2	PF01920.20	gi|529076674|ref|YP_008375677.1|	-	0.067	13.2	2.1	4.8	7.2	0.1	2.6	2	1	1	3	3	3	0	Prefoldin	subunit
Fmp27_WPPW	PF10359.9	gi|529076674|ref|YP_008375677.1|	-	0.068	12.0	0.4	0.074	11.9	0.4	1.1	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
Spc7	PF08317.11	gi|529076674|ref|YP_008375677.1|	-	0.07	12.0	0.5	0.087	11.7	0.5	1.2	1	0	0	1	1	1	0	Spc7	kinetochore	protein
DUF4407	PF14362.6	gi|529076674|ref|YP_008375677.1|	-	0.073	12.4	6.1	0.083	12.2	6.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
HWE_HK	PF07536.14	gi|529076674|ref|YP_008375677.1|	-	0.099	13.4	1.3	1.8	9.3	0.1	2.9	2	1	1	3	3	3	0	HWE	histidine	kinase
Lip_prot_lig_C	PF10437.9	gi|529076674|ref|YP_008375677.1|	-	0.11	12.5	0.1	0.25	11.3	0.0	1.6	2	0	0	2	2	1	0	Bacterial	lipoate	protein	ligase	C-terminus
Poty_coat	PF00767.18	gi|529076674|ref|YP_008375677.1|	-	0.11	12.0	0.3	0.15	11.6	0.3	1.1	1	0	0	1	1	1	0	Potyvirus	coat	protein
MscS_porin	PF12795.7	gi|529076674|ref|YP_008375677.1|	-	0.12	11.9	4.3	0.26	10.8	4.3	1.6	1	1	0	1	1	1	0	Mechanosensitive	ion	channel	porin	domain
Dynamitin	PF04912.14	gi|529076674|ref|YP_008375677.1|	-	0.13	11.5	3.8	0.1	11.9	1.9	1.6	1	1	1	2	2	2	0	Dynamitin
COG6	PF06419.11	gi|529076674|ref|YP_008375677.1|	-	0.14	10.4	0.4	0.17	10.1	0.4	1.1	1	0	0	1	1	1	0	Conserved	oligomeric	complex	COG6
RPW8	PF05659.11	gi|529076674|ref|YP_008375677.1|	-	0.14	11.8	0.0	0.24	11.1	0.0	1.4	1	0	0	1	1	1	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Baculo_PEP_C	PF04513.12	gi|529076674|ref|YP_008375677.1|	-	0.17	11.9	1.2	0.18	11.9	0.2	1.5	2	0	0	2	2	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF4988	PF16378.5	gi|529076674|ref|YP_008375677.1|	-	0.2	11.3	1.5	0.65	9.6	0.1	2.3	2	1	1	3	3	3	0	Domain	of	unknown	function
DUF1515	PF07439.11	gi|529076674|ref|YP_008375677.1|	-	0.21	11.6	1.1	0.41	10.7	0.9	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1515)
DASH_Spc19	PF08287.11	gi|529076674|ref|YP_008375677.1|	-	0.21	11.4	3.2	1.4	8.8	0.7	2.2	1	1	2	3	3	3	0	Spc19
BMFP	PF04380.13	gi|529076674|ref|YP_008375677.1|	-	0.3	11.6	11.6	0.3	11.6	0.7	3.3	3	0	0	3	3	3	0	Membrane	fusogenic	activity
Syntaxin-6_N	PF09177.11	gi|529076674|ref|YP_008375677.1|	-	0.47	11.0	2.5	2.5	8.7	2.3	2.2	1	1	0	1	1	1	0	Syntaxin	6,	N-terminal
MerR-DNA-bind	PF09278.11	gi|529076674|ref|YP_008375677.1|	-	0.6	10.7	9.0	1.1	9.8	0.7	2.9	2	1	1	3	3	3	0	MerR,	DNA	binding
Alanine_zipper	PF11839.8	gi|529076674|ref|YP_008375677.1|	-	0.74	10.2	5.8	0.16	12.3	1.1	2.2	2	1	0	2	2	2	0	Alanine-zipper,	major	outer	membrane	lipoprotein
GvpK	PF05121.12	gi|529076674|ref|YP_008375677.1|	-	1.8	8.6	6.1	0.74	9.9	2.2	2.0	2	0	0	2	2	2	0	Gas	vesicle	protein	K
FUSC	PF04632.12	gi|529076674|ref|YP_008375677.1|	-	1.9	6.9	5.0	2.4	6.6	5.0	1.2	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
PspB	PF06667.12	gi|529076674|ref|YP_008375677.1|	-	4.4	7.4	6.4	8.3	6.5	0.1	3.0	2	1	1	3	3	3	0	Phage	shock	protein	B
DUF4140	PF13600.6	gi|529076674|ref|YP_008375677.1|	-	4.7	7.7	8.0	4.5	7.8	1.3	2.4	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
DUF1405	PF07187.11	gi|529076675|ref|YP_008375678.1|	-	3.7e-52	176.5	14.2	4.5e-52	176.2	14.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1405)
Iron_permease	PF04120.12	gi|529076675|ref|YP_008375678.1|	-	0.18	11.6	0.5	0.36	10.6	0.5	1.5	1	0	0	1	1	1	0	Low	affinity	iron	permease
Zn_Tnp_IS1595	PF12760.7	gi|529076676|ref|YP_008375679.1|	-	0.0021	18.0	4.7	0.0041	17.1	4.7	1.5	1	1	0	1	1	1	1	Transposase	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|529076676|ref|YP_008375679.1|	-	0.0055	16.6	2.1	0.0085	16.0	2.1	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Prim_Zn_Ribbon	PF08273.12	gi|529076676|ref|YP_008375679.1|	-	0.0056	16.9	8.0	0.11	12.7	4.1	2.1	2	0	0	2	2	2	1	Zinc-binding	domain	of	primase-helicase
Ogr_Delta	PF04606.12	gi|529076676|ref|YP_008375679.1|	-	0.011	15.7	0.4	0.021	14.8	0.4	1.5	1	1	0	1	1	1	0	Ogr/Delta-like	zinc	finger
zf-ribbon_3	PF13248.6	gi|529076676|ref|YP_008375679.1|	-	0.011	15.1	5.8	0.8	9.2	0.8	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|529076676|ref|YP_008375679.1|	-	0.013	15.4	6.5	0.18	11.8	0.3	2.0	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
Zn-ribbon_8	PF09723.10	gi|529076676|ref|YP_008375679.1|	-	0.014	15.5	5.1	0.17	12.0	0.5	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
RNA_POL_M_15KD	PF02150.16	gi|529076676|ref|YP_008375679.1|	-	0.016	15.1	5.1	0.087	12.7	0.1	2.1	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
FdhE	PF04216.12	gi|529076676|ref|YP_008375679.1|	-	0.029	14.3	1.3	0.029	14.3	1.3	1.0	1	0	0	1	1	1	0	Protein	involved	in	formate	dehydrogenase	formation
UPF0547	PF10571.9	gi|529076676|ref|YP_008375679.1|	-	0.033	14.3	11.1	0.045	13.8	1.6	2.4	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-IS66	PF13005.7	gi|529076676|ref|YP_008375679.1|	-	0.036	14.5	4.8	0.14	12.6	1.0	2.1	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-tcix	PF14952.6	gi|529076676|ref|YP_008375679.1|	-	0.04	13.5	3.6	1.2	8.9	0.4	2.1	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-H2C2_2	PF13465.6	gi|529076676|ref|YP_008375679.1|	-	0.079	13.4	4.5	0.86	10.2	0.1	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
CpXC	PF14353.6	gi|529076676|ref|YP_008375679.1|	-	0.1	12.6	1.8	8.9	6.4	0.1	2.0	2	0	0	2	2	2	0	CpXC	protein
Zn_Tnp_IS1	PF03811.13	gi|529076676|ref|YP_008375679.1|	-	0.14	11.9	3.4	0.7	9.7	0.3	2.2	2	0	0	2	2	2	0	InsA	N-terminal	domain
Cys_rich_KTR	PF14205.6	gi|529076676|ref|YP_008375679.1|	-	0.14	12.0	2.4	0.92	9.4	2.3	2.0	1	1	0	1	1	1	0	Cysteine-rich	KTR
DUF3797	PF12677.7	gi|529076676|ref|YP_008375679.1|	-	0.15	12.0	5.1	1.4	8.9	0.2	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
TFIIS_C	PF01096.18	gi|529076676|ref|YP_008375679.1|	-	0.15	12.0	1.0	0.15	12.0	1.0	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
DUF2387	PF09526.10	gi|529076676|ref|YP_008375679.1|	-	0.2	11.9	2.9	0.35	11.1	2.9	1.4	1	1	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
TF_Zn_Ribbon	PF08271.12	gi|529076676|ref|YP_008375679.1|	-	0.35	10.4	7.1	10	5.7	7.1	2.3	1	1	0	1	1	1	0	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.6	gi|529076676|ref|YP_008375679.1|	-	0.41	10.4	9.1	1.3	8.9	0.4	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|529076676|ref|YP_008375679.1|	-	0.66	10.1	10.2	3.3	7.8	2.7	2.7	2	1	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
HypA	PF01155.19	gi|529076676|ref|YP_008375679.1|	-	0.95	9.5	2.8	11	6.0	0.4	1.8	1	1	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf_C2H2_10	PF18414.1	gi|529076676|ref|YP_008375679.1|	-	8.3	6.1	8.0	7.8	6.1	0.4	2.1	2	0	0	2	2	2	0	C2H2	type	zinc-finger
MutL_C	PF08676.11	gi|529076677|ref|YP_008375680.1|	-	2.6e-37	127.8	0.0	3.8e-37	127.3	0.0	1.2	1	0	0	1	1	1	1	MutL	C	terminal	dimerisation	domain
DNA_mis_repair	PF01119.19	gi|529076677|ref|YP_008375680.1|	-	1.5e-32	111.7	0.0	2.2e-32	111.2	0.0	1.3	1	0	0	1	1	1	1	DNA	mismatch	repair	protein,	C-terminal	domain
HATPase_c_3	PF13589.6	gi|529076677|ref|YP_008375680.1|	-	6.9e-12	45.4	0.1	1.2e-11	44.6	0.1	1.3	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.26	gi|529076677|ref|YP_008375680.1|	-	2.8e-05	24.6	0.2	7.3e-05	23.2	0.2	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PfkB	PF00294.24	gi|529076678|ref|YP_008375681.1|	-	4.5e-35	121.4	0.0	5.4e-35	121.1	0.0	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
FAD_binding_3	PF01494.19	gi|529076679|ref|YP_008375682.1|	-	3.8e-13	49.4	5.7	3.1e-09	36.6	3.7	3.0	2	1	0	2	2	2	2	FAD	binding	domain
DAO	PF01266.24	gi|529076679|ref|YP_008375682.1|	-	2.9e-09	37.0	1.7	0.0017	18.0	0.1	2.5	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
Lycopene_cycl	PF05834.12	gi|529076679|ref|YP_008375682.1|	-	3.3e-08	33.0	3.1	0.0066	15.5	0.0	2.9	3	0	0	3	3	3	2	Lycopene	cyclase	protein
FAD_oxidored	PF12831.7	gi|529076679|ref|YP_008375682.1|	-	1.6e-05	24.4	0.2	2.8e-05	23.7	0.2	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|529076679|ref|YP_008375682.1|	-	2e-05	23.5	0.0	5.3e-05	22.1	0.0	1.6	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox_2	PF07992.14	gi|529076679|ref|YP_008375682.1|	-	2e-05	24.0	2.2	0.00012	21.4	1.1	2.3	2	1	1	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|529076679|ref|YP_008375682.1|	-	0.00011	21.4	2.9	0.00014	21.1	0.7	1.9	1	1	0	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|529076679|ref|YP_008375682.1|	-	0.00018	21.7	0.1	0.00074	19.7	0.0	2.2	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.6	gi|529076679|ref|YP_008375682.1|	-	0.0023	17.2	0.4	0.0052	16.1	0.2	1.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|529076679|ref|YP_008375682.1|	-	0.0063	15.6	0.2	0.0088	15.2	0.2	1.1	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|529076679|ref|YP_008375682.1|	-	0.018	14.3	0.4	0.03	13.6	0.1	1.5	2	0	0	2	2	2	0	Thi4	family
Trp_halogenase	PF04820.14	gi|529076679|ref|YP_008375682.1|	-	0.035	12.9	0.4	2	7.2	0.1	2.4	3	0	0	3	3	3	0	Tryptophan	halogenase
Ebola_NP	PF05505.12	gi|529076679|ref|YP_008375682.1|	-	0.26	9.6	0.0	0.35	9.1	0.0	1.1	1	0	0	1	1	1	0	Ebola	nucleoprotein
TMEMspv1-c74-12	PF11044.8	gi|529076680|ref|YP_008375683.1|	-	0.22	11.5	0.5	0.26	11.3	0.5	1.2	1	0	0	1	1	1	0	Plectrovirus	spv1-c74	ORF	12	transmembrane	protein
DUF3040	PF11239.8	gi|529076680|ref|YP_008375683.1|	-	1.4	9.2	9.3	1.8	8.9	9.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
FaeA	PF04703.12	gi|529076681|ref|YP_008375684.1|	-	0.0014	18.9	0.1	0.0018	18.6	0.1	1.1	1	0	0	1	1	1	1	FaeA-like	protein
Put_DNA-bind_N	PF06971.13	gi|529076681|ref|YP_008375684.1|	-	0.041	13.9	0.1	0.066	13.2	0.1	1.4	1	0	0	1	1	1	0	Putative	DNA-binding	protein	N-terminus
DUF3040	PF11239.8	gi|529076681|ref|YP_008375684.1|	-	0.055	13.7	0.1	0.055	13.7	0.1	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
GerE	PF00196.19	gi|529076681|ref|YP_008375684.1|	-	0.14	11.7	0.1	0.38	10.4	0.1	1.7	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
Polyketide_cyc2	PF10604.9	gi|529076682|ref|YP_008375685.1|	-	2.5e-18	66.7	1.4	2.9e-18	66.5	1.4	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
COXG	PF06240.13	gi|529076682|ref|YP_008375685.1|	-	2e-05	24.3	0.0	6.3e-05	22.7	0.0	1.7	1	1	1	2	2	2	1	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
AHSA1	PF08327.11	gi|529076682|ref|YP_008375685.1|	-	0.00032	20.9	0.7	0.0057	16.9	0.7	2.1	1	1	0	1	1	1	1	Activator	of	Hsp90	ATPase	homolog	1-like	protein
Polyketide_cyc	PF03364.20	gi|529076682|ref|YP_008375685.1|	-	0.0014	18.8	0.4	0.0022	18.2	0.4	1.4	1	1	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
DUF2505	PF10698.9	gi|529076682|ref|YP_008375685.1|	-	0.054	13.6	1.4	0.94	9.6	0.1	2.2	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2505)
AAA	PF00004.29	gi|529076683|ref|YP_008375686.1|	-	4.5e-93	308.6	0.0	8.7e-47	158.9	0.0	2.3	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|529076683|ref|YP_008375686.1|	-	2.4e-27	94.5	5.3	2.1e-13	49.8	0.2	2.8	2	0	0	2	2	2	2	AAA+	lid	domain
CDC48_N	PF02359.18	gi|529076683|ref|YP_008375686.1|	-	3.5e-20	72.0	0.7	1.5e-19	69.9	0.3	2.3	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
RuvB_N	PF05496.12	gi|529076683|ref|YP_008375686.1|	-	2.2e-16	60.0	0.0	1.5e-07	31.3	0.0	3.3	3	0	0	3	3	3	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|529076683|ref|YP_008375686.1|	-	1.3e-15	58.1	2.2	8.7e-07	29.5	0.0	3.7	2	2	0	2	2	2	2	AAA	ATPase	domain
AAA_33	PF13671.6	gi|529076683|ref|YP_008375686.1|	-	1.7e-12	47.7	0.3	2.7e-05	24.3	0.0	2.9	3	0	0	3	3	2	2	AAA	domain
AAA_2	PF07724.14	gi|529076683|ref|YP_008375686.1|	-	2.1e-12	47.5	0.0	4.2e-06	27.0	0.0	2.4	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_22	PF13401.6	gi|529076683|ref|YP_008375686.1|	-	2.5e-12	47.3	1.8	0.011	16.0	0.2	4.2	2	2	1	3	3	3	3	AAA	domain
AAA_5	PF07728.14	gi|529076683|ref|YP_008375686.1|	-	8.8e-11	42.0	1.1	0.00022	21.2	0.1	4.0	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_18	PF13238.6	gi|529076683|ref|YP_008375686.1|	-	1.8e-09	38.2	0.0	0.0033	18.0	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
TIP49	PF06068.13	gi|529076683|ref|YP_008375686.1|	-	8.5e-09	35.1	0.0	0.0007	18.9	0.0	2.4	2	0	0	2	2	2	2	TIP49	P-loop	domain
AAA_28	PF13521.6	gi|529076683|ref|YP_008375686.1|	-	3.9e-08	33.7	1.1	0.0048	17.2	0.0	4.0	3	2	1	4	4	4	2	AAA	domain
AAA_14	PF13173.6	gi|529076683|ref|YP_008375686.1|	-	1.4e-07	31.6	0.0	0.0076	16.3	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.17	gi|529076683|ref|YP_008375686.1|	-	2.8e-07	30.4	0.0	0.017	14.9	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
Mg_chelatase	PF01078.21	gi|529076683|ref|YP_008375686.1|	-	6e-07	29.1	0.1	0.034	13.5	0.1	2.5	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
RNA_helicase	PF00910.22	gi|529076683|ref|YP_008375686.1|	-	1.1e-06	29.0	0.0	0.038	14.4	0.0	2.4	2	0	0	2	2	2	2	RNA	helicase
AAA_3	PF07726.11	gi|529076683|ref|YP_008375686.1|	-	1.2e-06	28.4	0.0	0.027	14.3	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_24	PF13479.6	gi|529076683|ref|YP_008375686.1|	-	1.8e-06	27.8	0.0	0.12	12.1	0.0	3.2	2	1	1	3	3	3	2	AAA	domain
TsaE	PF02367.17	gi|529076683|ref|YP_008375686.1|	-	1e-05	25.5	0.0	0.16	11.9	0.0	2.4	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Sigma54_activat	PF00158.26	gi|529076683|ref|YP_008375686.1|	-	1.3e-05	24.9	0.0	0.49	10.1	0.0	3.5	4	0	0	4	4	4	2	Sigma-54	interaction	domain
ABC_tran	PF00005.27	gi|529076683|ref|YP_008375686.1|	-	1.4e-05	25.6	0.0	0.13	12.7	0.0	2.5	2	0	0	2	2	2	2	ABC	transporter
Parvo_NS1	PF01057.17	gi|529076683|ref|YP_008375686.1|	-	1.5e-05	24.3	0.0	0.066	12.3	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
DUF815	PF05673.13	gi|529076683|ref|YP_008375686.1|	-	2.4e-05	23.6	0.0	0.029	13.5	0.0	2.3	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
AAA_25	PF13481.6	gi|529076683|ref|YP_008375686.1|	-	3.1e-05	23.6	7.5	0.27	10.8	0.8	4.3	2	2	1	3	3	3	2	AAA	domain
Zeta_toxin	PF06414.12	gi|529076683|ref|YP_008375686.1|	-	3.2e-05	23.3	0.0	0.16	11.3	0.0	2.8	2	0	0	2	2	2	2	Zeta	toxin
AAA_7	PF12775.7	gi|529076683|ref|YP_008375686.1|	-	3.7e-05	23.3	0.0	0.093	12.2	0.0	2.4	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
AAA_11	PF13086.6	gi|529076683|ref|YP_008375686.1|	-	5.6e-05	23.1	0.0	0.32	10.7	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
ATPase	PF06745.13	gi|529076683|ref|YP_008375686.1|	-	0.00011	21.6	0.4	0.95	8.8	0.0	3.6	4	0	0	4	4	4	2	KaiC
PhoH	PF02562.16	gi|529076683|ref|YP_008375686.1|	-	0.00017	21.2	0.1	0.72	9.3	0.0	2.4	2	0	0	2	2	2	2	PhoH-like	protein
AAA_19	PF13245.6	gi|529076683|ref|YP_008375686.1|	-	0.00019	21.8	0.7	0.52	10.6	0.0	3.0	2	2	0	2	2	2	2	AAA	domain
NACHT	PF05729.12	gi|529076683|ref|YP_008375686.1|	-	0.0002	21.3	1.1	1.5	8.7	0.0	3.9	4	0	0	4	4	4	1	NACHT	domain
Sigma54_activ_2	PF14532.6	gi|529076683|ref|YP_008375686.1|	-	0.00022	21.4	0.0	0.9	9.7	0.0	2.5	2	0	0	2	2	2	2	Sigma-54	interaction	domain
CDC48_2	PF02933.17	gi|529076683|ref|YP_008375686.1|	-	0.00031	20.4	0.8	0.0012	18.6	0.8	2.1	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
DUF2075	PF09848.9	gi|529076683|ref|YP_008375686.1|	-	0.00035	19.9	0.0	0.33	10.1	0.0	2.2	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
ATPase_2	PF01637.18	gi|529076683|ref|YP_008375686.1|	-	0.00059	19.8	0.0	1.7	8.5	0.0	3.0	2	2	0	2	2	2	2	ATPase	domain	predominantly	from	Archaea
AAA_17	PF13207.6	gi|529076683|ref|YP_008375686.1|	-	0.0017	18.8	0.0	1.5	9.2	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
NB-ARC	PF00931.22	gi|529076683|ref|YP_008375686.1|	-	0.0036	16.5	0.0	0.55	9.4	0.0	2.3	2	0	0	2	2	2	1	NB-ARC	domain
TniB	PF05621.11	gi|529076683|ref|YP_008375686.1|	-	0.01	15.2	0.0	17	4.8	0.0	3.7	3	1	1	4	4	4	0	Bacterial	TniB	protein
AAA_30	PF13604.6	gi|529076683|ref|YP_008375686.1|	-	0.015	15.1	8.4	0.57	9.9	0.5	3.9	3	2	0	3	3	3	0	AAA	domain
Cytidylate_kin	PF02224.18	gi|529076683|ref|YP_008375686.1|	-	0.033	13.9	1.2	12	5.6	0.0	3.1	3	0	0	3	3	3	0	Cytidylate	kinase
CPT	PF07931.12	gi|529076683|ref|YP_008375686.1|	-	0.052	13.4	0.0	6.8	6.5	0.0	2.7	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
AFG1_ATPase	PF03969.16	gi|529076683|ref|YP_008375686.1|	-	0.061	12.2	0.0	3.7	6.4	0.0	2.2	2	0	0	2	2	2	0	AFG1-like	ATPase
MMR_HSR1	PF01926.23	gi|529076683|ref|YP_008375686.1|	-	0.073	13.2	0.0	24	5.0	0.0	2.8	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
Bac_DnaA	PF00308.18	gi|529076683|ref|YP_008375686.1|	-	0.092	12.6	0.0	7.4	6.3	0.0	2.5	2	1	0	2	2	2	0	Bacterial	dnaA	protein
NTPase_1	PF03266.15	gi|529076683|ref|YP_008375686.1|	-	0.1	12.5	0.1	20	5.0	0.0	3.1	2	1	1	3	3	3	0	NTPase
Zn_ribbon_2	PF12674.7	gi|529076684|ref|YP_008375687.1|	-	0.059	14.0	0.4	0.069	13.8	0.4	1.1	1	0	0	1	1	1	0	Putative	zinc	ribbon	domain
zf-C2H2_3rep	PF18868.1	gi|529076684|ref|YP_008375687.1|	-	0.12	13.1	0.0	0.12	13.0	0.0	1.0	1	0	0	1	1	1	0	Zinc	finger	C2H2-type,	3	repeats
GHMP_kinases_N	PF00288.26	gi|529076685|ref|YP_008375688.1|	-	1.7e-10	41.0	5.0	5e-10	39.5	5.0	1.9	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|529076685|ref|YP_008375688.1|	-	0.081	13.3	0.1	0.29	11.5	0.0	1.9	2	0	0	2	2	2	0	GHMP	kinases	C	terminal
CM_2	PF01817.21	gi|529076686|ref|YP_008375689.1|	-	1.1e-14	54.5	5.2	1.3e-14	54.3	5.2	1.0	1	0	0	1	1	1	1	Chorismate	mutase	type	II
Response_reg	PF00072.24	gi|529076687|ref|YP_008375690.1|	-	1.8e-15	57.1	0.1	2.1e-15	56.8	0.1	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
OKR_DC_1_N	PF03709.15	gi|529076687|ref|YP_008375690.1|	-	0.0022	18.2	0.1	0.0043	17.3	0.1	1.6	1	1	1	2	2	2	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
zinc_ribbon_2	PF13240.6	gi|529076688|ref|YP_008375691.1|	-	0.0012	18.5	2.0	0.8	9.5	0.2	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|529076688|ref|YP_008375691.1|	-	0.0043	16.5	1.4	0.75	9.4	0.2	2.2	2	0	0	2	2	2	2	TFIIB	zinc-binding
zf-ISL3	PF14690.6	gi|529076688|ref|YP_008375691.1|	-	0.0046	17.6	0.6	2.1	9.1	0.0	2.1	2	0	0	2	2	2	1	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DNA_RNApol_7kD	PF03604.13	gi|529076688|ref|YP_008375691.1|	-	0.0047	16.6	0.2	0.0047	16.6	0.2	1.9	2	0	0	2	2	2	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
DNA_ligase_ZBD	PF03119.16	gi|529076688|ref|YP_008375691.1|	-	0.0059	16.6	2.4	0.12	12.4	0.1	2.3	2	0	0	2	2	2	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
DZR	PF12773.7	gi|529076688|ref|YP_008375691.1|	-	0.0095	15.9	1.1	0.016	15.2	1.1	1.4	1	1	0	1	1	1	1	Double	zinc	ribbon
DUF1610	PF07754.11	gi|529076688|ref|YP_008375691.1|	-	0.01	15.8	4.5	0.78	9.8	0.1	2.6	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1610)
zinc_ribbon_10	PF10058.9	gi|529076688|ref|YP_008375691.1|	-	0.013	15.3	3.1	0.082	12.7	3.3	1.9	1	1	1	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
zf-Mss51	PF13824.6	gi|529076688|ref|YP_008375691.1|	-	0.015	15.4	0.1	0.019	15.1	0.1	1.2	1	0	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Rubredoxin	PF00301.20	gi|529076688|ref|YP_008375691.1|	-	0.015	15.3	1.5	0.43	10.7	0.2	2.2	2	0	0	2	2	2	0	Rubredoxin
zf-RING_4	PF14570.6	gi|529076688|ref|YP_008375691.1|	-	0.016	15.0	1.6	0.64	9.9	0.3	2.2	2	0	0	2	2	2	0	RING/Ubox	like	zinc-binding	domain
Zn_ribbon_SprT	PF17283.2	gi|529076688|ref|YP_008375691.1|	-	0.016	15.1	5.6	0.071	13.0	5.6	1.8	1	1	0	1	1	1	0	SprT-like	zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|529076688|ref|YP_008375691.1|	-	0.021	14.3	4.0	1.9	8.0	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
HypA	PF01155.19	gi|529076688|ref|YP_008375691.1|	-	0.031	14.3	0.3	0.035	14.1	0.3	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|529076688|ref|YP_008375691.1|	-	0.035	14.2	3.3	2.2	8.5	0.3	2.1	1	1	1	2	2	2	0	Zinc	ribbon	domain
Thioredoxin_3	PF13192.6	gi|529076688|ref|YP_008375691.1|	-	0.042	13.9	0.5	0.25	11.4	0.0	1.9	1	1	1	2	2	2	0	Thioredoxin	domain
Zn_Tnp_IS1595	PF12760.7	gi|529076688|ref|YP_008375691.1|	-	0.043	13.8	5.2	0.065	13.2	5.2	1.3	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-C2H2_3	PF13878.6	gi|529076688|ref|YP_008375691.1|	-	0.055	13.3	0.5	0.72	9.7	0.0	2.1	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
zf-LITAF-like	PF10601.9	gi|529076688|ref|YP_008375691.1|	-	0.055	13.7	2.3	4.2	7.7	0.3	2.1	1	1	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
Rubredoxin_2	PF18073.1	gi|529076688|ref|YP_008375691.1|	-	0.06	13.1	5.6	0.18	11.5	0.4	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
DUF2752	PF10825.8	gi|529076688|ref|YP_008375691.1|	-	0.11	12.6	0.3	8	6.6	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2752)
UPF0547	PF10571.9	gi|529076688|ref|YP_008375691.1|	-	0.12	12.5	4.8	1.1	9.5	0.3	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
CpXC	PF14353.6	gi|529076688|ref|YP_008375691.1|	-	0.18	11.8	1.6	1.9	8.6	0.1	2.0	1	1	1	2	2	2	0	CpXC	protein
zf-4CXXC_R1	PF10497.9	gi|529076688|ref|YP_008375691.1|	-	0.24	11.7	3.5	0.42	10.9	3.5	1.5	1	1	0	1	1	1	0	Zinc-finger	domain	of	monoamine-oxidase	A	repressor	R1
DUF3797	PF12677.7	gi|529076688|ref|YP_008375691.1|	-	0.24	11.3	5.1	1.4	8.9	0.1	2.1	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3797)
OrfB_Zn_ribbon	PF07282.11	gi|529076688|ref|YP_008375691.1|	-	0.42	10.6	3.4	1.3	9.0	3.4	1.8	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DUF4379	PF14311.6	gi|529076688|ref|YP_008375691.1|	-	0.51	10.8	6.4	0.15	12.4	0.8	2.1	1	1	0	2	2	2	0	Probable	Zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|529076688|ref|YP_008375691.1|	-	0.77	9.7	5.2	9.7	6.2	5.2	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
zf-TFIIB	PF13453.6	gi|529076688|ref|YP_008375691.1|	-	4	6.9	6.6	23	4.4	6.8	1.9	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
Cob_adeno_trans	PF01923.18	gi|529076689|ref|YP_008375692.1|	-	5.1e-57	192.6	0.0	5.8e-57	192.4	0.0	1.0	1	0	0	1	1	1	1	Cobalamin	adenosyltransferase
Epimerase	PF01370.21	gi|529076690|ref|YP_008375693.1|	-	1.6e-44	152.2	0.0	1.9e-44	152.0	0.0	1.0	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|529076690|ref|YP_008375693.1|	-	3.4e-35	122.0	0.0	2.7e-34	119.0	0.0	1.9	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|529076690|ref|YP_008375693.1|	-	2.6e-13	49.7	0.0	3.4e-13	49.3	0.0	1.0	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|529076690|ref|YP_008375693.1|	-	5.5e-10	38.8	0.0	3.7e-09	36.1	0.0	2.2	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
3Beta_HSD	PF01073.19	gi|529076690|ref|YP_008375693.1|	-	1.2e-09	37.6	0.0	1.8e-09	37.1	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_10	PF13460.6	gi|529076690|ref|YP_008375693.1|	-	6.9e-09	35.9	0.0	1e-08	35.3	0.0	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
TrkA_N	PF02254.18	gi|529076690|ref|YP_008375693.1|	-	1.3e-07	31.9	1.2	2e-07	31.3	0.4	1.7	2	0	0	2	2	2	1	TrkA-N	domain
NmrA	PF05368.13	gi|529076690|ref|YP_008375693.1|	-	0.00035	20.2	0.1	0.086	12.4	0.1	2.2	2	0	0	2	2	2	2	NmrA-like	family
NAD_binding_4	PF07993.12	gi|529076690|ref|YP_008375693.1|	-	0.0017	17.6	0.1	0.062	12.5	0.0	2.6	1	1	1	2	2	2	1	Male	sterility	protein
adh_short	PF00106.25	gi|529076690|ref|YP_008375693.1|	-	0.0063	16.0	0.1	0.012	15.0	0.1	1.6	2	1	0	2	2	2	1	short	chain	dehydrogenase
GHMP_kinases_N	PF00288.26	gi|529076691|ref|YP_008375694.1|	-	2e-13	50.4	0.2	4.9e-13	49.1	0.2	1.7	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GalKase_gal_bdg	PF10509.9	gi|529076691|ref|YP_008375694.1|	-	5.2e-13	48.3	0.1	1.2e-12	47.2	0.1	1.6	1	0	0	1	1	1	1	Galactokinase	galactose-binding	signature
GHMP_kinases_C	PF08544.13	gi|529076691|ref|YP_008375694.1|	-	6.2e-13	48.9	0.2	1.7e-12	47.5	0.2	1.7	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
5-FTHF_cyc-lig	PF01812.20	gi|529076691|ref|YP_008375694.1|	-	0.1	12.5	0.0	0.15	11.8	0.0	1.3	1	0	0	1	1	1	0	5-formyltetrahydrofolate	cyclo-ligase	family
Usp	PF00582.26	gi|529076692|ref|YP_008375695.1|	-	3.3e-57	192.9	11.8	8.1e-30	104.2	0.9	2.7	2	1	0	2	2	2	2	Universal	stress	protein	family
Oxidored_FMN	PF00724.20	gi|529076693|ref|YP_008375696.1|	-	1.3e-71	241.6	0.0	1.6e-71	241.4	0.0	1.0	1	0	0	1	1	1	1	NADH:flavin	oxidoreductase	/	NADH	oxidase	family
Dus	PF01207.17	gi|529076693|ref|YP_008375696.1|	-	0.18	10.9	0.0	1.6	7.8	0.0	1.9	2	0	0	2	2	2	0	Dihydrouridine	synthase	(Dus)
RVT_3	PF13456.6	gi|529076694|ref|YP_008375697.1|	-	0.00015	21.5	0.0	0.00023	20.9	0.0	1.3	1	0	0	1	1	1	1	Reverse	transcriptase-like
IL11	PF07400.11	gi|529076694|ref|YP_008375697.1|	-	0.0066	16.1	0.0	0.01	15.5	0.0	1.2	1	0	0	1	1	1	1	Interleukin	11
RNase_H	PF00075.24	gi|529076694|ref|YP_008375697.1|	-	0.17	12.1	0.0	0.32	11.2	0.0	1.4	1	1	0	1	1	1	0	RNase	H
COX15-CtaA	PF02628.15	gi|529076695|ref|YP_008375698.1|	-	1.1e-10	41.1	26.9	6.4e-10	38.6	12.6	3.3	2	1	0	2	2	2	1	Cytochrome	oxidase	assembly	protein
AAA	PF00004.29	gi|529076696|ref|YP_008375699.1|	-	1.5e-11	44.9	0.0	5.2e-11	43.1	0.0	2.0	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.12	gi|529076696|ref|YP_008375699.1|	-	2.4e-05	24.1	0.0	7.4e-05	22.5	0.0	1.8	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_22	PF13401.6	gi|529076696|ref|YP_008375699.1|	-	3.8e-05	24.0	0.0	0.031	14.5	0.0	3.2	2	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|529076696|ref|YP_008375699.1|	-	0.0001	22.8	0.0	0.0042	17.5	0.0	2.9	2	1	1	3	3	3	1	AAA	ATPase	domain
AAA_5	PF07728.14	gi|529076696|ref|YP_008375699.1|	-	0.00015	21.8	0.0	0.00055	19.9	0.0	2.0	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_assoc_2	PF16193.5	gi|529076696|ref|YP_008375699.1|	-	0.00026	21.3	2.0	0.00052	20.3	0.3	2.4	2	1	0	2	2	2	1	AAA	C-terminal	domain
IstB_IS21	PF01695.17	gi|529076696|ref|YP_008375699.1|	-	0.00082	19.1	0.0	0.002	17.9	0.0	1.6	2	0	0	2	2	1	1	IstB-like	ATP	binding	protein
AAA_2	PF07724.14	gi|529076696|ref|YP_008375699.1|	-	0.0013	18.9	0.0	0.0064	16.6	0.0	2.0	2	0	0	2	2	2	1	AAA	domain	(Cdc48	subfamily)
AAA_25	PF13481.6	gi|529076696|ref|YP_008375699.1|	-	0.0015	18.2	0.2	0.037	13.6	0.0	2.6	1	1	1	2	2	2	1	AAA	domain
AAA_18	PF13238.6	gi|529076696|ref|YP_008375699.1|	-	0.0078	16.8	0.1	0.1	13.2	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_14	PF13173.6	gi|529076696|ref|YP_008375699.1|	-	0.0096	16.0	0.0	0.041	13.9	0.0	2.0	3	0	0	3	3	3	1	AAA	domain
AAA_28	PF13521.6	gi|529076696|ref|YP_008375699.1|	-	0.017	15.4	0.0	0.062	13.5	0.0	2.0	1	0	0	1	1	1	0	AAA	domain
DUF815	PF05673.13	gi|529076696|ref|YP_008375699.1|	-	0.021	14.0	0.0	0.048	12.8	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
Zeta_toxin	PF06414.12	gi|529076696|ref|YP_008375699.1|	-	0.021	14.1	0.0	0.043	13.1	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
RNA_helicase	PF00910.22	gi|529076696|ref|YP_008375699.1|	-	0.022	15.2	0.0	0.072	13.5	0.0	1.9	2	0	0	2	2	2	0	RNA	helicase
Mg_chelatase	PF01078.21	gi|529076696|ref|YP_008375699.1|	-	0.075	12.4	0.0	0.13	11.6	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
RsgA_GTPase	PF03193.16	gi|529076696|ref|YP_008375699.1|	-	0.087	12.7	0.0	0.17	11.8	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_7	PF12775.7	gi|529076696|ref|YP_008375699.1|	-	0.092	12.2	0.0	0.15	11.5	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
NACHT	PF05729.12	gi|529076696|ref|YP_008375699.1|	-	0.11	12.4	0.0	0.9	9.4	0.0	2.1	2	0	0	2	2	2	0	NACHT	domain
Bac_DnaA	PF00308.18	gi|529076696|ref|YP_008375699.1|	-	0.11	12.3	0.0	0.42	10.4	0.0	1.8	2	0	0	2	2	2	0	Bacterial	dnaA	protein
Presenilin	PF01080.17	gi|529076696|ref|YP_008375699.1|	-	0.48	9.1	2.9	0.64	8.7	2.9	1.1	1	0	0	1	1	1	0	Presenilin
TPR_14	PF13428.6	gi|529076696|ref|YP_008375699.1|	-	1.1	10.3	0.1	1.1	10.3	0.1	3.8	4	0	0	4	4	2	0	Tetratricopeptide	repeat
acVLRF1	PF18859.1	gi|529076697|ref|YP_008375700.1|	-	7.9e-28	97.3	0.5	7.9e-28	97.3	0.5	2.5	2	1	0	2	2	2	1	Actinobacteria/chloroflexi	VLRF1	release	factor
HOOK	PF05622.12	gi|529076697|ref|YP_008375700.1|	-	5.2e-05	21.6	5.6	6.4e-05	21.3	5.6	1.1	1	0	0	1	1	1	1	HOOK	protein
baeRF_family10	PF18854.1	gi|529076697|ref|YP_008375700.1|	-	9.8e-05	22.6	0.3	9.8e-05	22.6	0.3	2.3	2	0	0	2	2	2	1	Bacterial	archaeo-eukaryotic	release	factor	family	10
eRF1_2	PF03464.15	gi|529076697|ref|YP_008375700.1|	-	0.00039	20.7	0.0	0.00079	19.7	0.0	1.5	1	0	0	1	1	1	1	eRF1	domain	2
ERM	PF00769.19	gi|529076697|ref|YP_008375700.1|	-	0.0051	16.7	9.0	0.0089	15.9	9.0	1.3	1	0	0	1	1	1	1	Ezrin/radixin/moesin	family
Uso1_p115_C	PF04871.13	gi|529076697|ref|YP_008375700.1|	-	0.0061	16.9	2.9	0.011	16.1	2.9	1.4	1	0	0	1	1	1	1	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
ADIP	PF11559.8	gi|529076697|ref|YP_008375700.1|	-	0.0065	16.6	4.6	0.013	15.6	4.6	1.4	1	0	0	1	1	1	1	Afadin-	and	alpha	-actinin-Binding
DUF3450	PF11932.8	gi|529076697|ref|YP_008375700.1|	-	0.013	14.9	4.6	0.028	13.7	4.6	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
Jnk-SapK_ap_N	PF09744.9	gi|529076697|ref|YP_008375700.1|	-	0.013	15.8	9.0	0.026	14.8	9.0	1.5	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
Spc7	PF08317.11	gi|529076697|ref|YP_008375700.1|	-	0.013	14.4	2.9	0.017	14.0	2.9	1.1	1	0	0	1	1	1	0	Spc7	kinetochore	protein
Fmp27_WPPW	PF10359.9	gi|529076697|ref|YP_008375700.1|	-	0.018	13.9	2.2	0.026	13.4	2.2	1.2	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
EzrA	PF06160.12	gi|529076697|ref|YP_008375700.1|	-	0.019	13.1	2.0	0.027	12.6	2.0	1.1	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
ABC_tran_CTD	PF16326.5	gi|529076697|ref|YP_008375700.1|	-	0.021	15.0	9.5	0.045	14.0	7.8	2.2	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
bZIP_2	PF07716.15	gi|529076697|ref|YP_008375700.1|	-	0.022	14.8	8.9	1.3	9.2	0.4	2.5	2	0	0	2	2	2	0	Basic	region	leucine	zipper
CLZ	PF16526.5	gi|529076697|ref|YP_008375700.1|	-	0.027	14.8	1.4	0.027	14.8	1.4	2.9	3	1	1	4	4	2	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
DUF4407	PF14362.6	gi|529076697|ref|YP_008375700.1|	-	0.027	13.8	2.3	0.041	13.2	2.3	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Tropomyosin	PF00261.20	gi|529076697|ref|YP_008375700.1|	-	0.036	13.4	8.9	0.061	12.7	8.9	1.3	1	0	0	1	1	1	0	Tropomyosin
Syntaxin	PF00804.25	gi|529076697|ref|YP_008375700.1|	-	0.045	13.4	3.4	0.068	12.8	3.4	1.2	1	0	0	1	1	1	0	Syntaxin
Nup54	PF13874.6	gi|529076697|ref|YP_008375700.1|	-	0.053	13.6	3.7	0.11	12.7	3.7	1.4	1	0	0	1	1	1	0	Nucleoporin	complex	subunit	54
SlyX	PF04102.12	gi|529076697|ref|YP_008375700.1|	-	0.12	13.1	5.6	0.31	11.7	5.6	1.8	1	0	0	1	1	1	0	SlyX
FapA	PF03961.13	gi|529076697|ref|YP_008375700.1|	-	0.13	10.8	1.3	0.18	10.4	1.3	1.1	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
TMPIT	PF07851.13	gi|529076697|ref|YP_008375700.1|	-	0.16	11.2	0.2	0.23	10.7	0.2	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
DUF1664	PF07889.12	gi|529076697|ref|YP_008375700.1|	-	0.19	11.7	0.5	0.33	11.0	0.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
TSC22	PF01166.18	gi|529076697|ref|YP_008375700.1|	-	0.23	11.8	2.5	0.56	10.5	1.2	2.1	2	0	0	2	2	2	0	TSC-22/dip/bun	family
betaPIX_CC	PF16523.5	gi|529076697|ref|YP_008375700.1|	-	0.26	11.2	8.2	0.7	9.8	6.5	2.4	2	1	1	3	3	3	0	betaPIX	coiled	coil
Atg14	PF10186.9	gi|529076697|ref|YP_008375700.1|	-	0.28	10.2	4.7	0.44	9.6	4.7	1.3	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
GAS	PF13851.6	gi|529076697|ref|YP_008375700.1|	-	0.39	10.0	6.2	0.092	12.1	3.2	1.4	2	0	0	2	2	1	0	Growth-arrest	specific	micro-tubule	binding
OmpH	PF03938.14	gi|529076697|ref|YP_008375700.1|	-	0.48	10.7	4.3	0.54	10.6	2.2	1.9	2	0	0	2	2	2	0	Outer	membrane	protein	(OmpH-like)
CENP-Q	PF13094.6	gi|529076697|ref|YP_008375700.1|	-	0.53	10.5	10.7	0.67	10.1	10.7	1.4	1	1	0	1	1	1	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
UPF0242	PF06785.11	gi|529076697|ref|YP_008375700.1|	-	0.56	10.3	4.0	0.95	9.5	4.0	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
MCC-bdg_PDZ	PF10506.9	gi|529076697|ref|YP_008375700.1|	-	0.67	10.0	8.5	0.43	10.6	0.9	3.1	3	0	0	3	3	3	0	PDZ	domain	of	MCC-2	bdg	protein	for	Usher	syndrome
APG6_N	PF17675.1	gi|529076697|ref|YP_008375700.1|	-	0.71	10.4	10.6	0.53	10.8	8.4	1.8	2	0	0	2	2	2	0	Apg6	coiled-coil	region
ZapB	PF06005.12	gi|529076697|ref|YP_008375700.1|	-	0.72	10.3	13.8	59	4.2	13.8	2.7	1	1	0	1	1	1	0	Cell	division	protein	ZapB
Ax_dynein_light	PF10211.9	gi|529076697|ref|YP_008375700.1|	-	0.76	9.7	7.4	3.5	7.5	7.5	1.8	1	1	1	2	2	2	0	Axonemal	dynein	light	chain
ATG16	PF08614.11	gi|529076697|ref|YP_008375700.1|	-	0.95	9.7	12.6	0.11	12.8	8.2	1.6	2	0	0	2	2	1	0	Autophagy	protein	16	(ATG16)
TPR_MLP1_2	PF07926.12	gi|529076697|ref|YP_008375700.1|	-	0.99	9.5	10.4	1.7	8.7	3.0	2.2	1	1	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
GreA_GreB_N	PF03449.15	gi|529076697|ref|YP_008375700.1|	-	1.6	8.9	11.7	6.1	7.1	11.7	2.0	1	1	0	1	1	1	0	Transcription	elongation	factor,	N-terminal
FmiP_Thoc5	PF09766.9	gi|529076697|ref|YP_008375700.1|	-	2.5	7.3	5.3	3.6	6.8	5.3	1.2	1	0	0	1	1	1	0	Fms-interacting	protein/Thoc5
DivIC	PF04977.15	gi|529076697|ref|YP_008375700.1|	-	2.7	7.8	9.6	2.6	7.9	1.1	2.5	1	1	1	2	2	2	0	Septum	formation	initiator
Snapin_Pallidin	PF14712.6	gi|529076697|ref|YP_008375700.1|	-	2.8	8.4	5.8	16	6.0	5.8	2.1	1	1	0	1	1	1	0	Snapin/Pallidin
Spc24	PF08286.11	gi|529076697|ref|YP_008375700.1|	-	4.1	7.7	6.1	3.3	8.0	0.4	2.2	1	1	1	2	2	2	0	Spc24	subunit	of	Ndc80
CorA	PF01544.18	gi|529076697|ref|YP_008375700.1|	-	7.3	5.8	6.9	12	5.2	6.9	1.2	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
Dynamitin	PF04912.14	gi|529076699|ref|YP_008375702.1|	-	0.0069	15.8	2.7	0.012	15.0	2.7	1.3	1	0	0	1	1	1	1	Dynamitin
ABC_tran_CTD	PF16326.5	gi|529076699|ref|YP_008375702.1|	-	0.0069	16.6	0.2	0.014	15.7	0.2	1.5	1	0	0	1	1	1	1	ABC	transporter	C-terminal	domain
Tropomyosin_1	PF12718.7	gi|529076699|ref|YP_008375702.1|	-	0.095	12.9	1.0	0.15	12.3	1.0	1.2	1	0	0	1	1	1	0	Tropomyosin	like
FlxA	PF14282.6	gi|529076699|ref|YP_008375702.1|	-	0.11	12.4	1.0	2.5	8.1	1.1	2.3	1	1	1	2	2	2	0	FlxA-like	protein
DUF2802	PF10975.8	gi|529076699|ref|YP_008375702.1|	-	0.13	12.4	1.1	3	8.0	0.4	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2802)
NPV_P10	PF05531.12	gi|529076699|ref|YP_008375702.1|	-	0.18	12.3	0.0	3.6	8.1	0.0	2.2	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
Fmp27_WPPW	PF10359.9	gi|529076699|ref|YP_008375702.1|	-	0.22	10.3	0.9	0.33	9.8	0.9	1.1	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
BLOC1_2	PF10046.9	gi|529076699|ref|YP_008375702.1|	-	0.24	11.7	0.8	9.8	6.6	0.0	2.2	1	1	1	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
PriC	PF07445.12	gi|529076699|ref|YP_008375702.1|	-	0.29	11.1	2.6	0.53	10.2	1.9	1.6	1	1	1	2	2	2	0	Primosomal	replication	protein	priC
DUF4407	PF14362.6	gi|529076699|ref|YP_008375702.1|	-	0.45	9.8	3.9	0.84	8.9	3.9	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
DUF4140	PF13600.6	gi|529076699|ref|YP_008375702.1|	-	0.77	10.2	5.9	1.6	9.2	2.0	2.3	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
Nup54	PF13874.6	gi|529076699|ref|YP_008375702.1|	-	0.86	9.7	5.1	1.3	9.2	4.8	1.4	1	1	0	1	1	1	0	Nucleoporin	complex	subunit	54
HTH_5	PF01022.20	gi|529076700|ref|YP_008375703.1|	-	2.9e-18	65.5	0.0	2.6e-16	59.2	0.0	2.4	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|529076700|ref|YP_008375703.1|	-	6e-16	58.2	0.4	2e-13	50.2	0.5	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|529076700|ref|YP_008375703.1|	-	1.2e-14	53.9	0.1	5.9e-06	26.1	0.0	2.2	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|529076700|ref|YP_008375703.1|	-	3.7e-13	49.1	1.7	1.9e-08	34.0	0.4	2.4	2	0	0	2	2	2	2	MarR	family
HTH_IclR	PF09339.10	gi|529076700|ref|YP_008375703.1|	-	1.3e-09	37.7	0.0	0.0032	17.2	0.0	3.0	2	1	0	2	2	2	2	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|529076700|ref|YP_008375703.1|	-	1.5e-09	38.0	0.0	0.0015	18.8	0.0	2.3	2	0	0	2	2	2	2	Transcriptional	regulator
HTH_24	PF13412.6	gi|529076700|ref|YP_008375703.1|	-	1.4e-07	31.0	5.3	1.4e-05	24.5	0.1	3.5	3	1	0	3	3	3	2	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|529076700|ref|YP_008375703.1|	-	3.5e-07	30.1	0.0	3.9e-06	26.7	0.1	2.2	2	0	0	2	2	2	1	MarR	family
HTH_Crp_2	PF13545.6	gi|529076700|ref|YP_008375703.1|	-	3.8e-07	30.0	0.1	0.00035	20.5	0.1	2.5	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.6	gi|529076700|ref|YP_008375703.1|	-	8.3e-07	29.4	0.1	3.5e-05	24.2	0.1	2.5	2	1	0	2	2	2	1	Winged	helix	DNA-binding	domain
DprA_WH	PF17782.1	gi|529076700|ref|YP_008375703.1|	-	3.7e-06	27.0	2.5	0.0032	17.5	0.2	2.4	2	0	0	2	2	2	2	DprA	winged	helix	domain
Fe_dep_repress	PF01325.19	gi|529076700|ref|YP_008375703.1|	-	4e-06	26.9	0.0	0.0055	16.9	0.0	2.4	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_CodY	PF08222.11	gi|529076700|ref|YP_008375703.1|	-	4.3e-05	23.0	0.0	0.0011	18.5	0.0	2.3	2	0	0	2	2	2	1	CodY	helix-turn-helix	domain
HTH_11	PF08279.12	gi|529076700|ref|YP_008375703.1|	-	6.2e-05	22.9	0.0	0.00016	21.5	0.0	1.7	1	0	0	1	1	1	1	HTH	domain
DUF4423	PF14394.6	gi|529076700|ref|YP_008375703.1|	-	7.2e-05	22.6	0.0	0.046	13.4	0.0	2.3	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4423)
DUF2250	PF10007.9	gi|529076700|ref|YP_008375703.1|	-	0.00015	21.8	0.0	0.13	12.3	0.0	2.2	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
GntR	PF00392.21	gi|529076700|ref|YP_008375703.1|	-	0.00021	20.9	0.0	0.25	11.0	0.0	2.5	2	0	0	2	2	2	2	Bacterial	regulatory	proteins,	gntR	family
LexA_DNA_bind	PF01726.16	gi|529076700|ref|YP_008375703.1|	-	0.00028	20.6	0.0	0.027	14.3	0.0	2.5	2	0	0	2	2	2	1	LexA	DNA	binding	domain
HTH_47	PF16221.5	gi|529076700|ref|YP_008375703.1|	-	0.00049	19.6	0.0	0.11	12.0	0.0	2.4	2	0	0	2	2	2	1	winged	helix-turn-helix
PadR	PF03551.14	gi|529076700|ref|YP_008375703.1|	-	0.0015	18.4	0.8	0.025	14.6	0.1	3.0	3	1	0	3	3	2	1	Transcriptional	regulator	PadR-like	family
DDRGK	PF09756.9	gi|529076700|ref|YP_008375703.1|	-	0.004	16.8	0.0	0.0089	15.6	0.0	1.5	2	0	0	2	2	1	1	DDRGK	domain
Mnd1	PF03962.15	gi|529076700|ref|YP_008375703.1|	-	0.0055	17.0	0.1	0.54	10.6	0.0	2.3	2	0	0	2	2	2	1	Mnd1	HTH	domain
RP-C	PF03428.13	gi|529076700|ref|YP_008375703.1|	-	0.0061	16.2	0.3	0.25	11.0	0.0	2.2	2	0	0	2	2	2	1	Replication	protein	C	N-terminal	domain
FeoC	PF09012.10	gi|529076700|ref|YP_008375703.1|	-	0.0083	16.2	0.0	3.2	7.9	0.0	2.5	2	0	0	2	2	2	1	FeoC	like	transcriptional	regulator
SMC_ScpB	PF04079.16	gi|529076700|ref|YP_008375703.1|	-	0.0085	15.7	0.0	0.59	9.7	0.0	2.8	2	1	0	2	2	2	1	Segregation	and	condensation	complex	subunit	ScpB
HxlR	PF01638.17	gi|529076700|ref|YP_008375703.1|	-	0.011	15.6	0.1	0.19	11.6	0.0	2.4	3	0	0	3	3	2	0	HxlR-like	helix-turn-helix
HTH_10	PF04967.12	gi|529076700|ref|YP_008375703.1|	-	0.017	14.9	0.0	0.045	13.6	0.0	1.7	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HemN_C	PF06969.16	gi|529076700|ref|YP_008375703.1|	-	0.02	14.9	0.0	2.4	8.3	0.0	2.5	2	0	0	2	2	2	0	HemN	C-terminal	domain
Cdc6_C	PF09079.11	gi|529076700|ref|YP_008375703.1|	-	0.029	14.3	0.0	0.34	10.9	0.0	2.5	2	0	0	2	2	2	0	CDC6,	C	terminal	winged	helix	domain
BLACT_WH	PF17778.1	gi|529076700|ref|YP_008375703.1|	-	0.039	13.9	2.1	4	7.5	0.2	2.4	2	0	0	2	2	2	0	Beta-lactamase	associated	winged	helix	domain
FaeA	PF04703.12	gi|529076700|ref|YP_008375703.1|	-	0.046	14.1	0.0	0.087	13.2	0.0	1.4	1	0	0	1	1	1	0	FaeA-like	protein
HTH_23	PF13384.6	gi|529076700|ref|YP_008375703.1|	-	0.057	13.2	0.1	1	9.2	0.1	2.7	2	1	0	2	2	2	0	Homeodomain-like	domain
ArsR	PF09824.9	gi|529076700|ref|YP_008375703.1|	-	0.092	12.4	0.0	1.4	8.5	0.0	2.1	2	0	0	2	2	2	0	ArsR	transcriptional	regulator
PSRT	PF07636.11	gi|529076700|ref|YP_008375703.1|	-	0.094	12.4	0.8	0.19	11.4	0.8	1.5	1	0	0	1	1	1	0	PSRT
HTH_29	PF13551.6	gi|529076700|ref|YP_008375703.1|	-	0.11	12.5	1.2	0.22	11.6	0.1	2.0	3	0	0	3	3	1	0	Winged	helix-turn	helix
HTH_1	PF00126.27	gi|529076700|ref|YP_008375703.1|	-	0.12	12.3	0.1	0.73	9.8	0.0	2.3	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
RPA_C	PF08784.11	gi|529076700|ref|YP_008375703.1|	-	0.15	12.7	0.0	4	8.1	0.0	2.2	2	0	0	2	2	2	0	Replication	protein	A	C	terminal
DUF2513	PF10711.9	gi|529076700|ref|YP_008375703.1|	-	0.16	12.3	0.0	0.25	11.6	0.0	1.3	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
HTH_36	PF13730.6	gi|529076700|ref|YP_008375703.1|	-	0.16	12.0	0.0	0.45	10.5	0.0	1.8	2	0	0	2	2	1	0	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|529076700|ref|YP_008375703.1|	-	0.53	10.2	0.1	0.53	10.2	0.1	3.5	3	1	0	3	3	2	0	AsnC-type	helix-turn-helix	domain
TAT_signal	PF10518.9	gi|529076701|ref|YP_008375704.1|	-	0.048	13.5	0.0	0.048	13.5	0.0	3.1	4	0	0	4	4	4	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Asparaginase	PF00710.20	gi|529076702|ref|YP_008375705.1|	-	3.1e-58	196.5	2.3	4.9e-58	195.8	1.9	1.5	2	0	0	2	2	2	1	Asparaginase,	N-terminal
Asparaginase_C	PF17763.1	gi|529076702|ref|YP_008375705.1|	-	2.2e-26	92.3	0.0	1.4e-25	89.7	0.0	2.1	2	0	0	2	2	2	1	Glutaminase/Asparaginase	C-terminal	domain
GatD_N	PF18195.1	gi|529076702|ref|YP_008375705.1|	-	4.8e-14	51.4	0.0	8.1e-14	50.7	0.0	1.4	1	0	0	1	1	1	1	GatD	N-terminal	domain
FG-GAP_2	PF14312.6	gi|529076703|ref|YP_008375706.1|	-	4.1e-31	107.0	31.4	2.2e-10	40.6	0.2	7.5	7	0	0	7	7	7	6	FG-GAP	repeat
TrkA_C	PF02080.21	gi|529076704|ref|YP_008375707.1|	-	0.0012	18.7	0.4	0.0034	17.2	0.4	1.8	1	0	0	1	1	1	1	TrkA-C	domain
TrkA_C	PF02080.21	gi|529076705|ref|YP_008375708.1|	-	4.5e-11	42.4	0.1	3.1e-09	36.6	0.0	2.7	2	0	0	2	2	2	2	TrkA-C	domain
TrkA_N	PF02254.18	gi|529076706|ref|YP_008375709.1|	-	8.9e-30	103.3	0.3	1.4e-29	102.7	0.3	1.3	1	0	0	1	1	1	1	TrkA-N	domain
Ion_trans_2	PF07885.16	gi|529076706|ref|YP_008375709.1|	-	2.6e-13	49.7	4.7	2.6e-13	49.7	4.7	2.2	3	0	0	3	3	3	1	Ion	channel
Ion_trans	PF00520.31	gi|529076706|ref|YP_008375709.1|	-	0.005	16.1	1.4	0.01	15.1	1.4	1.5	1	1	0	1	1	1	1	Ion	transport	protein
HPP	PF04982.13	gi|529076707|ref|YP_008375710.1|	-	7.8e-15	55.1	5.4	7.8e-15	55.1	5.4	1.6	2	0	0	2	2	2	1	HPP	family
Usp	PF00582.26	gi|529076707|ref|YP_008375710.1|	-	2.2e-08	34.7	6.4	0.33	11.5	6.3	4.3	2	2	1	3	3	3	3	Universal	stress	protein	family
DUF63	PF01889.17	gi|529076708|ref|YP_008375711.1|	-	6.3e-12	46.3	8.4	1.1e-11	45.5	8.4	1.3	1	1	0	1	1	1	1	Membrane	protein	of	unknown	function	DUF63
COPI_assoc	PF08507.10	gi|529076708|ref|YP_008375711.1|	-	0.007	16.4	3.2	0.007	16.4	3.2	2.2	3	0	0	3	3	3	1	COPI	associated	protein
PGF-CTERM	PF18204.1	gi|529076709|ref|YP_008375712.1|	-	0.0011	18.8	6.1	0.0021	17.9	6.1	1.5	1	0	0	1	1	1	1	PGF-CTERM	motif
Trypan_PARP	PF05887.11	gi|529076709|ref|YP_008375712.1|	-	0.34	10.9	7.6	0.23	11.4	5.3	1.9	2	0	0	2	2	2	0	Procyclic	acidic	repetitive	protein	(PARP)
UPF0004	PF00919.20	gi|529076710|ref|YP_008375713.1|	-	3.6e-20	71.8	0.0	6.1e-20	71.1	0.0	1.4	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0004
Radical_SAM	PF04055.21	gi|529076710|ref|YP_008375713.1|	-	1.3e-18	67.9	0.0	2e-18	67.3	0.0	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
TRAM	PF01938.20	gi|529076710|ref|YP_008375713.1|	-	1.9e-06	27.7	0.0	3.4e-06	26.9	0.0	1.4	1	0	0	1	1	1	1	TRAM	domain
Memo	PF01875.17	gi|529076711|ref|YP_008375714.1|	-	2e-66	223.9	0.0	2.3e-66	223.7	0.0	1.0	1	0	0	1	1	1	1	Memo-like	protein
Cuticle_1	PF08140.11	gi|529076712|ref|YP_008375715.1|	-	0.013	15.5	0.6	0.74	9.9	0.0	2.7	2	0	0	2	2	2	0	Crustacean	cuticle	protein	repeat
Aldo_ket_red	PF00248.21	gi|529076714|ref|YP_008375717.1|	-	6.7e-72	242.2	0.0	7.5e-72	242.0	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
EutQ	PF06249.12	gi|529076714|ref|YP_008375717.1|	-	0.36	10.6	1.2	2.7	7.7	0.1	2.4	3	0	0	3	3	3	0	Ethanolamine	utilisation	protein	EutQ
HTH_20	PF12840.7	gi|529076715|ref|YP_008375718.1|	-	0.0002	21.4	0.2	0.00061	19.8	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_7	PF02796.15	gi|529076715|ref|YP_008375718.1|	-	0.002	18.2	0.0	0.0049	16.9	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
TrmB	PF01978.19	gi|529076715|ref|YP_008375718.1|	-	0.0044	16.9	0.0	0.0098	15.8	0.0	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
CENP-F_N	PF10481.9	gi|529076715|ref|YP_008375718.1|	-	0.0074	16.0	0.1	0.011	15.4	0.1	1.2	1	0	0	1	1	1	1	Cenp-F	N-terminal	domain
MarR_2	PF12802.7	gi|529076715|ref|YP_008375718.1|	-	0.033	14.1	0.2	0.08	12.8	0.0	1.7	2	0	0	2	2	2	0	MarR	family
HTH_11	PF08279.12	gi|529076715|ref|YP_008375718.1|	-	0.062	13.3	0.0	0.22	11.5	0.0	2.0	1	1	0	1	1	1	0	HTH	domain
M	PF02370.16	gi|529076715|ref|YP_008375718.1|	-	0.29	11.8	2.3	0.74	10.6	2.3	1.7	1	0	0	1	1	1	0	M	protein	repeat
Mqo	PF06039.15	gi|529076717|ref|YP_008375720.1|	-	1.4e-26	93.2	0.0	2.1e-25	89.3	0.0	1.9	1	1	0	1	1	1	1	Malate:quinone	oxidoreductase	(Mqo)
DAO	PF01266.24	gi|529076717|ref|YP_008375720.1|	-	3.8e-26	92.5	0.0	4.7e-26	92.2	0.0	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.6	gi|529076717|ref|YP_008375720.1|	-	4.7e-06	26.1	0.1	2e-05	24.0	0.0	1.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.14	gi|529076717|ref|YP_008375720.1|	-	0.00066	19.0	0.1	0.72	9.0	0.0	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|529076717|ref|YP_008375720.1|	-	0.00082	18.2	0.1	0.02	13.6	0.0	2.1	2	0	0	2	2	2	1	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|529076717|ref|YP_008375720.1|	-	0.0019	18.4	0.0	0.0044	17.2	0.0	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
NAD_binding_9	PF13454.6	gi|529076717|ref|YP_008375720.1|	-	0.014	15.3	0.1	1.6	8.7	0.0	2.4	2	0	0	2	2	2	0	FAD-NAD(P)-binding
FAD_binding_2	PF00890.24	gi|529076717|ref|YP_008375720.1|	-	0.027	13.6	0.0	0.036	13.2	0.0	1.2	1	0	0	1	1	1	0	FAD	binding	domain
Pyr_redox	PF00070.27	gi|529076717|ref|YP_008375720.1|	-	0.047	14.2	0.3	15	6.2	0.0	2.5	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|529076717|ref|YP_008375720.1|	-	0.16	11.2	0.1	0.74	9.0	0.0	1.9	2	0	0	2	2	2	0	Thi4	family
BMFP	PF04380.13	gi|529076718|ref|YP_008375721.1|	-	0.015	15.7	0.9	0.015	15.7	0.9	1.1	1	0	0	1	1	1	0	Membrane	fusogenic	activity
Radical_SAM	PF04055.21	gi|529076719|ref|YP_008375722.1|	-	4.9e-16	59.6	0.0	1.4e-15	58.1	0.0	1.8	1	1	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|529076719|ref|YP_008375722.1|	-	2.1e-06	28.0	0.0	5.1e-06	26.8	0.0	1.6	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|529076719|ref|YP_008375722.1|	-	9.6e-06	25.7	0.0	0.00028	21.0	0.0	2.4	2	1	0	2	2	2	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.6	gi|529076719|ref|YP_008375722.1|	-	0.00034	21.1	0.0	0.00066	20.1	0.0	1.5	1	0	0	1	1	1	1	Iron-sulfur	cluster-binding	domain
Adhesin_P1_N	PF18652.1	gi|529076719|ref|YP_008375722.1|	-	0.071	13.1	0.2	0.15	12.1	0.2	1.5	1	0	0	1	1	1	0	Adhesin	P1	N-terminal	domain
ABC2_membrane_3	PF12698.7	gi|529076720|ref|YP_008375723.1|	-	4e-18	65.6	0.2	5.7e-18	65.1	0.2	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|529076720|ref|YP_008375723.1|	-	1e-09	38.2	10.2	2.5e-09	36.8	10.1	1.7	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|529076720|ref|YP_008375723.1|	-	1.1e-06	28.2	5.3	1.1e-06	28.2	5.3	2.1	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_4	PF12730.7	gi|529076720|ref|YP_008375723.1|	-	0.0012	18.8	13.0	0.0046	16.9	8.0	3.1	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|529076720|ref|YP_008375723.1|	-	0.003	17.1	1.7	0.003	17.1	1.7	1.9	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
PrsW-protease	PF13367.6	gi|529076721|ref|YP_008375724.1|	-	1.6e-09	37.5	14.0	1.6e-09	37.5	14.0	2.2	2	0	0	2	2	2	1	PrsW	family	intramembrane	metalloprotease
ABC2_membrane_2	PF12679.7	gi|529076721|ref|YP_008375724.1|	-	2.1e-08	33.8	0.0	2.1e-08	33.8	0.0	3.4	3	1	0	3	3	3	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|529076721|ref|YP_008375724.1|	-	0.019	14.1	23.5	0.0049	16.0	19.9	2.0	2	1	0	2	2	2	0	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|529076721|ref|YP_008375724.1|	-	8	6.4	22.4	0.14	12.1	10.5	3.1	3	1	0	3	3	3	0	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|529076722|ref|YP_008375725.1|	-	3.5e-29	102.1	0.0	5.8e-29	101.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529076722|ref|YP_008375725.1|	-	4.6e-13	49.6	0.1	1.1e-06	28.7	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|529076722|ref|YP_008375725.1|	-	0.0009	19.8	0.3	0.002	18.7	0.3	1.5	1	0	0	1	1	1	1	AAA	domain
DUF4162	PF13732.6	gi|529076722|ref|YP_008375725.1|	-	0.002	18.8	0.1	0.034	14.8	0.1	2.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_30	PF13604.6	gi|529076722|ref|YP_008375725.1|	-	0.0031	17.3	0.1	0.0063	16.2	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
SRP54	PF00448.22	gi|529076722|ref|YP_008375725.1|	-	0.0083	15.8	0.0	0.018	14.7	0.0	1.5	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
AAA_29	PF13555.6	gi|529076722|ref|YP_008375725.1|	-	0.011	15.4	0.1	0.029	14.1	0.1	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|529076722|ref|YP_008375725.1|	-	0.017	14.9	0.0	0.12	12.1	0.0	1.9	1	1	0	2	2	2	0	AAA	ATPase	domain
AAA_24	PF13479.6	gi|529076722|ref|YP_008375725.1|	-	0.017	14.8	0.1	0.2	11.4	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|529076722|ref|YP_008375725.1|	-	0.029	14.7	0.0	0.075	13.3	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_27	PF13514.6	gi|529076722|ref|YP_008375725.1|	-	0.074	12.6	0.2	0.17	11.4	0.1	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|529076722|ref|YP_008375725.1|	-	0.14	12.3	0.1	0.99	9.6	0.1	2.3	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|529076722|ref|YP_008375725.1|	-	0.15	12.5	0.1	0.71	10.3	0.0	2.0	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
adh_short_C2	PF13561.6	gi|529076724|ref|YP_008375727.1|	-	3.6e-71	239.4	6.4	4.1e-71	239.2	6.4	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|529076724|ref|YP_008375727.1|	-	2.3e-54	183.8	5.5	2.7e-54	183.6	5.5	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|529076724|ref|YP_008375727.1|	-	3.1e-11	43.5	2.4	4.4e-11	43.0	2.4	1.2	1	0	0	1	1	1	1	KR	domain
TadZ_N	PF16968.5	gi|529076724|ref|YP_008375727.1|	-	0.057	13.1	0.1	0.1	12.3	0.1	1.4	1	0	0	1	1	1	0	Pilus	assembly	protein	TadZ	N-terminal
Epimerase	PF01370.21	gi|529076724|ref|YP_008375727.1|	-	0.19	11.2	1.4	0.31	10.5	0.9	1.6	1	1	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
3HCDH_N	PF02737.18	gi|529076724|ref|YP_008375727.1|	-	0.57	10.1	4.8	1.7	8.5	4.1	2.0	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
adh_short_C2	PF13561.6	gi|529076725|ref|YP_008375728.1|	-	1.1e-39	136.4	0.1	2.3e-39	135.3	0.1	1.4	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|529076725|ref|YP_008375728.1|	-	2.5e-35	121.7	0.0	3e-35	121.5	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
Epimerase	PF01370.21	gi|529076725|ref|YP_008375728.1|	-	5.6e-06	26.0	0.0	2.7e-05	23.8	0.0	2.0	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
KR	PF08659.10	gi|529076725|ref|YP_008375728.1|	-	7.6e-05	22.7	0.2	0.00024	21.1	0.2	1.8	1	1	0	1	1	1	1	KR	domain
RmlD_sub_bind	PF04321.17	gi|529076725|ref|YP_008375728.1|	-	0.17	11.0	0.0	0.21	10.7	0.0	1.2	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
SNF	PF00209.18	gi|529076726|ref|YP_008375729.1|	-	7.3e-54	183.3	38.3	3.1e-32	112.0	16.6	2.0	2	0	0	2	2	2	2	Sodium:neurotransmitter	symporter	family
DDE_Tnp_1	PF01609.21	gi|529076727|ref|YP_008375730.1|	-	6.3e-29	101.2	0.0	8.2e-29	100.8	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.12	gi|529076727|ref|YP_008375730.1|	-	0.01	15.1	0.0	0.014	14.6	0.0	1.1	1	0	0	1	1	1	0	Archaeal	putative	transposase	ISC1217
Rop-like	PF05082.13	gi|529076727|ref|YP_008375730.1|	-	0.07	13.0	0.7	2.9	7.8	0.0	2.7	3	0	0	3	3	3	0	Rop-like
DDE_Tnp_1_4	PF13701.6	gi|529076727|ref|YP_008375730.1|	-	0.12	10.6	0.0	0.26	9.5	0.0	1.5	1	1	1	2	2	2	0	Transposase	DDE	domain	group	1
DUF1449	PF07290.11	gi|529076728|ref|YP_008375731.1|	-	0.022	14.4	0.9	0.022	14.4	0.9	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1449)
UDG	PF03167.19	gi|529076729|ref|YP_008375732.1|	-	3.2e-09	37.0	0.0	3.6e-09	36.8	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
DUF383	PF04063.14	gi|529076729|ref|YP_008375732.1|	-	0.17	11.5	0.0	0.28	10.8	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF383)
Inositol_P	PF00459.25	gi|529076731|ref|YP_008375734.1|	-	5.4e-59	199.9	0.6	6.2e-59	199.7	0.6	1.0	1	0	0	1	1	1	1	Inositol	monophosphatase	family
Polysacc_synt_3	PF13440.6	gi|529076732|ref|YP_008375735.1|	-	1.6e-28	99.8	11.9	1.6e-28	99.8	11.9	2.4	2	1	1	3	3	3	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.6	gi|529076732|ref|YP_008375735.1|	-	4.1e-24	85.3	16.5	4.1e-24	85.3	16.5	3.3	3	1	1	4	4	4	1	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt	PF01943.17	gi|529076732|ref|YP_008375735.1|	-	3.5e-16	59.4	15.8	3.5e-16	59.4	15.8	2.7	1	1	2	3	3	3	2	Polysaccharide	biosynthesis	protein
MurJ	PF03023.14	gi|529076732|ref|YP_008375735.1|	-	1.7e-11	43.4	11.8	1.7e-11	43.4	11.8	2.3	2	1	0	2	2	2	1	Lipid	II	flippase	MurJ
MatE	PF01554.18	gi|529076732|ref|YP_008375735.1|	-	8.1e-09	35.3	3.7	8.1e-09	35.3	3.7	3.1	3	1	0	3	3	3	1	MatE
Abhydrolase_6	PF12697.7	gi|529076734|ref|YP_008375737.1|	-	3.2e-21	77.0	6.7	4.6e-21	76.4	6.7	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|529076734|ref|YP_008375737.1|	-	2.1e-15	57.1	0.0	3.2e-13	49.9	0.0	2.1	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|529076734|ref|YP_008375737.1|	-	2e-08	33.8	0.0	3.8e-08	32.9	0.0	1.4	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
ABC2_membrane_2	PF12679.7	gi|529076735|ref|YP_008375738.1|	-	3.5e-12	46.2	16.9	3.5e-12	46.2	16.9	1.9	1	1	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|529076735|ref|YP_008375738.1|	-	0.025	13.7	10.5	0.03	13.4	10.5	1.2	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|529076736|ref|YP_008375739.1|	-	1.2e-24	87.3	0.0	1.7e-24	86.9	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529076736|ref|YP_008375739.1|	-	1e-19	71.5	0.0	1.1e-11	45.1	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|529076736|ref|YP_008375739.1|	-	3.9e-07	29.7	0.2	0.014	14.8	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|529076736|ref|YP_008375739.1|	-	3.3e-05	23.5	0.1	7e-05	22.5	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|529076736|ref|YP_008375739.1|	-	3.4e-05	23.7	0.0	0.035	13.8	0.2	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.6	gi|529076736|ref|YP_008375739.1|	-	0.0023	18.5	0.0	0.0034	17.9	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_13	PF13166.6	gi|529076736|ref|YP_008375739.1|	-	0.003	16.3	0.0	0.21	10.2	0.0	2.0	2	0	0	2	2	2	2	AAA	domain
AAA_16	PF13191.6	gi|529076736|ref|YP_008375739.1|	-	0.021	15.2	0.2	0.046	14.1	0.2	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_25	PF13481.6	gi|529076736|ref|YP_008375739.1|	-	0.068	12.7	0.4	0.21	11.1	0.1	1.9	2	0	0	2	2	2	0	AAA	domain
MutS_V	PF00488.21	gi|529076736|ref|YP_008375739.1|	-	0.12	12.4	0.1	6.9	6.6	0.0	2.1	2	0	0	2	2	2	0	MutS	domain	V
RsgA_GTPase	PF03193.16	gi|529076736|ref|YP_008375739.1|	-	0.16	11.9	0.1	0.27	11.1	0.1	1.3	1	0	0	1	1	1	0	RsgA	GTPase
NACHT	PF05729.12	gi|529076736|ref|YP_008375739.1|	-	0.19	11.6	0.0	0.33	10.9	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
NosD	PF05048.13	gi|529076737|ref|YP_008375740.1|	-	8.6e-24	84.1	0.7	2.4e-23	82.7	0.8	1.6	1	1	1	2	2	2	1	Periplasmic	copper-binding	protein	(NosD)
Beta_helix	PF13229.6	gi|529076737|ref|YP_008375740.1|	-	1.8e-14	53.9	7.7	1e-13	51.5	0.6	2.7	2	1	1	3	3	3	2	Right	handed	beta	helix	region
NosL	PF05573.12	gi|529076737|ref|YP_008375740.1|	-	9.9e-14	51.8	0.0	1.9e-13	50.9	0.0	1.4	1	0	0	1	1	1	1	NosL
DUF1565	PF07602.11	gi|529076737|ref|YP_008375740.1|	-	0.034	13.5	6.0	4.4	6.6	0.5	3.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1565)
Pectate_lyase_3	PF12708.7	gi|529076737|ref|YP_008375740.1|	-	0.038	13.8	7.6	0.46	10.3	3.4	3.3	1	1	2	3	3	3	0	Pectate	lyase	superfamily	protein
NosL	PF05573.12	gi|529076738|ref|YP_008375741.1|	-	2.6e-44	150.7	0.3	3e-44	150.5	0.3	1.0	1	0	0	1	1	1	1	NosL
Peptidase_S11	PF00768.20	gi|529076738|ref|YP_008375741.1|	-	0.016	14.6	0.0	0.02	14.3	0.0	1.1	1	0	0	1	1	1	0	D-alanyl-D-alanine	carboxypeptidase
PRY	PF13765.6	gi|529076738|ref|YP_008375741.1|	-	0.068	12.8	0.1	0.13	11.9	0.1	1.4	1	0	0	1	1	1	0	SPRY-associated	domain
SCO1-SenC	PF02630.14	gi|529076739|ref|YP_008375742.1|	-	2.2e-17	63.2	0.0	3e-17	62.8	0.0	1.1	1	0	0	1	1	1	1	SCO1/SenC
DUF3297	PF11730.8	gi|529076739|ref|YP_008375742.1|	-	0.11	12.4	0.0	0.2	11.6	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3297)
Redoxin	PF08534.10	gi|529076740|ref|YP_008375743.1|	-	8.2e-09	35.3	0.0	1.1e-08	35.0	0.0	1.1	1	0	0	1	1	1	1	Redoxin
AhpC-TSA	PF00578.21	gi|529076740|ref|YP_008375743.1|	-	2.1e-05	24.4	0.0	2.7e-05	24.1	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Thioredoxin_8	PF13905.6	gi|529076740|ref|YP_008375743.1|	-	0.00027	21.2	0.0	0.00071	19.8	0.0	1.6	1	1	0	1	1	1	1	Thioredoxin-like
Thioredoxin	PF00085.20	gi|529076740|ref|YP_008375743.1|	-	0.0022	18.0	0.0	0.0031	17.5	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
DsbD	PF02683.15	gi|529076741|ref|YP_008375744.1|	-	1.3e-11	44.8	11.5	1.9e-11	44.3	11.5	1.2	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
DUF420	PF04238.12	gi|529076742|ref|YP_008375745.1|	-	3e-33	114.9	13.8	4.7e-33	114.3	13.8	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF420)
DUF2306	PF10067.9	gi|529076742|ref|YP_008375745.1|	-	0.00046	20.4	13.2	0.00055	20.2	1.4	2.2	2	0	0	2	2	2	2	Predicted	membrane	protein	(DUF2306)
Cytochrom_B561	PF03188.16	gi|529076742|ref|YP_008375745.1|	-	0.016	15.4	14.7	0.053	13.7	6.5	2.5	1	1	1	2	2	2	0	Eukaryotic	cytochrome	b561
DUF4084	PF13321.6	gi|529076742|ref|YP_008375745.1|	-	0.029	13.9	2.7	0.04	13.5	2.7	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4084)
DUF1663	PF07909.11	gi|529076742|ref|YP_008375745.1|	-	0.13	11.0	0.0	0.18	10.5	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1663)
DUF1240	PF06836.12	gi|529076742|ref|YP_008375745.1|	-	0.27	11.8	3.2	0.58	10.7	0.3	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1240)
DUF3619	PF12279.8	gi|529076742|ref|YP_008375745.1|	-	1.2	9.5	6.1	0.23	11.8	0.2	2.6	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF3619)
YesK	PF14150.6	gi|529076742|ref|YP_008375745.1|	-	1.7	8.9	12.2	0.33	11.2	0.4	3.3	2	1	1	3	3	3	0	YesK-like	protein
Thioredoxin	PF00085.20	gi|529076743|ref|YP_008375746.1|	-	1.8e-11	44.0	0.0	2e-11	43.8	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
TraF	PF13728.6	gi|529076743|ref|YP_008375746.1|	-	0.00076	19.4	0.0	0.001	19.0	0.0	1.2	1	0	0	1	1	1	1	F	plasmid	transfer	operon	protein
Thioredoxin_3	PF13192.6	gi|529076743|ref|YP_008375746.1|	-	0.0039	17.2	0.0	0.0058	16.7	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin	domain
Thioredoxin_2	PF13098.6	gi|529076743|ref|YP_008375746.1|	-	0.0057	17.1	0.1	0.014	15.9	0.1	1.6	1	1	0	1	1	1	1	Thioredoxin-like	domain
DUF836	PF05768.14	gi|529076743|ref|YP_008375746.1|	-	0.012	16.0	0.0	0.015	15.7	0.0	1.2	1	0	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
HyaE	PF07449.11	gi|529076743|ref|YP_008375746.1|	-	0.051	13.5	0.1	0.12	12.3	0.0	1.6	2	0	0	2	2	2	0	Hydrogenase-1	expression	protein	HyaE
Meth_synt_1	PF08267.12	gi|529076743|ref|YP_008375746.1|	-	0.18	11.3	0.0	0.23	10.9	0.0	1.1	1	0	0	1	1	1	0	Cobalamin-independent	synthase,	N-terminal	domain
MutS_V	PF00488.21	gi|529076744|ref|YP_008375747.1|	-	6.9e-77	257.7	0.1	1.4e-76	256.8	0.1	1.4	1	0	0	1	1	1	1	MutS	domain	V
MutS_III	PF05192.18	gi|529076744|ref|YP_008375747.1|	-	3.9e-38	131.6	2.9	7.6e-38	130.7	2.9	1.5	1	0	0	1	1	1	1	MutS	domain	III
MutS_I	PF01624.20	gi|529076744|ref|YP_008375747.1|	-	1.6e-35	121.8	0.0	4.6e-35	120.3	0.0	1.8	2	0	0	2	2	2	1	MutS	domain	I
MutS_IV	PF05190.18	gi|529076744|ref|YP_008375747.1|	-	2.7e-30	104.6	0.2	2.7e-30	104.6	0.2	1.8	2	0	0	2	2	2	1	MutS	family	domain	IV
MutS_II	PF05188.17	gi|529076744|ref|YP_008375747.1|	-	1.5e-18	67.4	0.0	9.4e-18	64.8	0.0	2.3	2	0	0	2	2	2	1	MutS	domain	II
AAA_23	PF13476.6	gi|529076744|ref|YP_008375747.1|	-	0.088	13.3	0.0	3.5	8.1	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
LD_cluster3	PF18180.1	gi|529076744|ref|YP_008375747.1|	-	0.099	12.3	0.0	1.4	8.5	0.0	2.3	2	0	0	2	2	2	0	SLOG	cluster3	family
DUF1521	PF07481.11	gi|529076744|ref|YP_008375747.1|	-	0.12	12.4	0.1	0.25	11.4	0.1	1.4	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF1521)
CK2S	PF15011.6	gi|529076744|ref|YP_008375747.1|	-	0.17	11.7	0.9	0.42	10.5	0.9	1.6	1	0	0	1	1	1	0	Casein	Kinase	2	substrate
DAP3	PF10236.9	gi|529076744|ref|YP_008375747.1|	-	0.19	10.9	0.0	0.32	10.1	0.0	1.2	1	0	0	1	1	1	0	Mitochondrial	ribosomal	death-associated	protein	3
AP_endonuc_2	PF01261.24	gi|529076745|ref|YP_008375748.1|	-	5.5e-09	35.8	0.4	0.00012	21.6	0.0	2.2	1	1	0	2	2	2	2	Xylose	isomerase-like	TIM	barrel
DUF521	PF04412.13	gi|529076745|ref|YP_008375748.1|	-	0.17	10.6	0.0	0.22	10.2	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF521)
Lar_N	PF09861.9	gi|529076746|ref|YP_008375749.1|	-	1.6e-34	118.9	0.0	2.6e-34	118.2	0.0	1.3	1	0	0	1	1	1	1	Lactate	racemase	N-terminal	domain
DUF362	PF04015.12	gi|529076746|ref|YP_008375749.1|	-	0.0022	18.3	0.0	0.003	17.8	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF362)
Fer2	PF00111.27	gi|529076747|ref|YP_008375750.1|	-	2e-11	43.6	0.1	3.9e-11	42.8	0.1	1.4	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
DnaJ	PF00226.31	gi|529076747|ref|YP_008375750.1|	-	2.1e-10	40.6	0.0	5e-10	39.4	0.0	1.6	1	0	0	1	1	1	1	DnaJ	domain
HTH_20	PF12840.7	gi|529076748|ref|YP_008375751.1|	-	5.8e-14	51.9	0.1	1e-13	51.1	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|529076748|ref|YP_008375751.1|	-	4.3e-07	29.7	0.0	8.1e-07	28.8	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|529076748|ref|YP_008375751.1|	-	1.3e-06	27.9	0.0	2.5e-06	26.9	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|529076748|ref|YP_008375751.1|	-	0.029	14.3	0.1	0.051	13.5	0.1	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF202	PF02656.15	gi|529076748|ref|YP_008375751.1|	-	0.07	13.6	4.2	0.36	11.3	1.7	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF202)
HTH_5	PF01022.20	gi|529076748|ref|YP_008375751.1|	-	0.082	12.8	0.0	0.13	12.2	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_27	PF13463.6	gi|529076748|ref|YP_008375751.1|	-	0.099	13.1	0.0	0.21	12.1	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Sigma70_r4	PF04545.16	gi|529076748|ref|YP_008375751.1|	-	0.13	11.8	0.0	0.29	10.7	0.0	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
DUF2513	PF10711.9	gi|529076748|ref|YP_008375751.1|	-	0.14	12.5	0.0	0.2	12.0	0.0	1.2	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
HTH_34	PF13601.6	gi|529076748|ref|YP_008375751.1|	-	0.17	12.1	0.0	0.27	11.4	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
B-block_TFIIIC	PF04182.12	gi|529076748|ref|YP_008375751.1|	-	0.21	11.8	0.0	0.33	11.2	0.0	1.2	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
Histidinol_dh	PF00815.20	gi|529076749|ref|YP_008375752.1|	-	1.7e-156	521.3	5.9	2.1e-156	521.1	5.9	1.0	1	0	0	1	1	1	1	Histidinol	dehydrogenase
HSCB_C	PF07743.13	gi|529076749|ref|YP_008375752.1|	-	4.7	7.8	6.5	81	3.8	3.0	3.4	2	1	0	2	2	2	0	HSCB	C-terminal	oligomerisation	domain
Bac_rhodopsin	PF01036.18	gi|529076750|ref|YP_008375753.1|	-	2.5e-45	154.8	19.8	3.1e-45	154.5	19.8	1.0	1	0	0	1	1	1	1	Bacteriorhodopsin-like	protein
Choline_transpo	PF04515.12	gi|529076750|ref|YP_008375753.1|	-	1.3	8.1	11.4	3.3	6.8	2.4	2.1	2	0	0	2	2	2	0	Plasma-membrane	choline	transporter
DUF3464	PF11947.8	gi|529076750|ref|YP_008375753.1|	-	2.2	8.0	3.7	1	9.1	0.6	1.9	1	1	1	2	2	2	0	Photosynthesis	affected	mutant	68
MCPsignal	PF00015.21	gi|529076751|ref|YP_008375754.1|	-	4.5e-37	127.5	57.5	1.1e-36	126.3	27.1	4.8	1	1	3	4	4	4	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.25	gi|529076751|ref|YP_008375754.1|	-	2.2e-13	50.4	17.4	8.8e-11	42.0	0.7	5.3	4	1	0	4	4	4	2	HAMP	domain
dCache_1	PF02743.18	gi|529076751|ref|YP_008375754.1|	-	1.1e-08	35.2	0.1	1.1e-08	35.2	0.1	3.8	2	1	2	4	4	4	1	Cache	domain
Prominin	PF05478.11	gi|529076751|ref|YP_008375754.1|	-	1.2e-05	23.6	8.7	0.00019	19.6	1.7	2.6	2	1	1	3	3	3	2	Prominin
DUF948	PF06103.11	gi|529076751|ref|YP_008375754.1|	-	9.1e-05	22.6	47.1	0.38	11.0	3.0	7.4	3	2	3	6	6	6	4	Bacterial	protein	of	unknown	function	(DUF948)
DUF1664	PF07889.12	gi|529076751|ref|YP_008375754.1|	-	0.016	15.2	37.1	0.34	11.0	3.0	6.2	3	2	2	6	6	6	0	Protein	of	unknown	function	(DUF1664)
TMP_2	PF06791.13	gi|529076751|ref|YP_008375754.1|	-	0.017	14.8	35.2	0.047	13.4	11.2	3.2	2	1	0	3	3	3	0	Prophage	tail	length	tape	measure	protein
Htr2	PF17909.1	gi|529076751|ref|YP_008375754.1|	-	0.022	15.0	1.6	0.022	15.0	1.6	4.6	5	0	0	5	5	3	0	Htr2	transmembrane	domain
Syntaxin-6_N	PF09177.11	gi|529076751|ref|YP_008375754.1|	-	0.037	14.6	32.8	0.8	10.3	2.3	5.2	3	2	1	4	4	4	0	Syntaxin	6,	N-terminal
KxDL	PF10241.9	gi|529076751|ref|YP_008375754.1|	-	0.71	10.2	14.3	2.7	8.3	0.0	5.1	3	2	3	6	6	5	0	Uncharacterized	conserved	protein
Seryl_tRNA_N	PF02403.22	gi|529076751|ref|YP_008375754.1|	-	0.75	10.1	32.6	1.6	9.0	0.7	5.6	3	2	2	5	5	5	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF745	PF05335.13	gi|529076751|ref|YP_008375754.1|	-	0.94	9.2	48.8	3.3	7.4	1.0	5.3	3	1	2	5	5	5	0	Protein	of	unknown	function	(DUF745)
Mce4_CUP1	PF11887.8	gi|529076751|ref|YP_008375754.1|	-	1.6	8.1	21.6	0.098	12.1	3.1	3.5	2	2	1	3	3	3	0	Cholesterol	uptake	porter	CUP1	of	Mce4,	putative
FliD_N	PF02465.18	gi|529076751|ref|YP_008375754.1|	-	2.5	8.9	20.0	0.33	11.7	0.6	5.8	2	1	1	3	3	2	0	Flagellar	hook-associated	protein	2	N-terminus
Hormone_1	PF00103.20	gi|529076751|ref|YP_008375754.1|	-	3.6	7.3	4.9	44	3.7	0.4	3.3	2	1	1	3	3	3	0	Somatotropin	hormone	family
AAA_13	PF13166.6	gi|529076751|ref|YP_008375754.1|	-	4.3	5.9	33.1	3.9	6.0	18.8	3.0	1	1	1	2	2	2	0	AAA	domain
ING	PF12998.7	gi|529076751|ref|YP_008375754.1|	-	4.5	7.9	8.9	4.8	7.8	0.1	3.8	3	1	1	4	4	4	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
BAR_2	PF10455.9	gi|529076751|ref|YP_008375754.1|	-	5.6	6.0	17.5	0.5	9.5	12.1	1.9	1	1	1	2	2	2	0	Bin/amphiphysin/Rvs	domain	for	vesicular	trafficking
UPF0242	PF06785.11	gi|529076751|ref|YP_008375754.1|	-	5.8	7.0	23.7	0.24	11.5	0.2	3.5	1	1	2	3	3	3	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
BLOC1_2	PF10046.9	gi|529076751|ref|YP_008375754.1|	-	7	7.0	32.1	1.4	9.3	1.2	6.4	4	2	2	7	7	6	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
RPW8	PF05659.11	gi|529076751|ref|YP_008375754.1|	-	7.3	6.3	11.4	72	3.1	0.3	4.8	3	2	3	6	6	6	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Erp_C	PF06780.11	gi|529076751|ref|YP_008375754.1|	-	7.7	6.5	8.7	0.9	9.6	0.4	3.4	4	0	0	4	4	4	0	Erp	protein	C-terminus
TMPIT	PF07851.13	gi|529076751|ref|YP_008375754.1|	-	8	5.6	21.1	1.7	7.8	4.3	3.9	1	1	3	4	4	4	0	TMPIT-like	protein
Tnp_DNA_bind	PF14706.6	gi|529076752|ref|YP_008375755.1|	-	1.7e-25	88.6	0.0	3.2e-25	87.7	0.0	1.5	1	0	0	1	1	1	1	Transposase	DNA-binding
Dimer_Tnp_Tn5	PF02281.16	gi|529076752|ref|YP_008375755.1|	-	1.1e-07	31.5	0.1	2.7e-07	30.2	0.1	1.8	1	1	0	1	1	1	1	Transposase	Tn5	dimerisation	domain
DDE_Tnp_1	PF01609.21	gi|529076752|ref|YP_008375755.1|	-	1.2e-07	31.6	0.1	2.3e-07	30.7	0.1	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
Pkinase	PF00069.25	gi|529076753|ref|YP_008375756.1|	-	2.5e-12	46.8	0.0	3.4e-12	46.3	0.0	1.1	1	0	0	1	1	1	1	Protein	kinase	domain
Pkinase_Tyr	PF07714.17	gi|529076753|ref|YP_008375756.1|	-	4.6e-07	29.4	0.0	6.3e-07	28.9	0.0	1.1	1	0	0	1	1	1	1	Protein	tyrosine	kinase
HEAT	PF02985.22	gi|529076753|ref|YP_008375756.1|	-	0.0055	16.9	0.1	0.015	15.5	0.1	1.6	1	0	0	1	1	1	1	HEAT	repeat
HEAT_2	PF13646.6	gi|529076753|ref|YP_008375756.1|	-	0.016	15.6	0.3	0.061	13.7	0.3	2.0	1	0	0	1	1	1	0	HEAT	repeats
HEAT_EZ	PF13513.6	gi|529076753|ref|YP_008375756.1|	-	0.062	13.8	1.1	0.23	12.0	0.4	2.3	2	0	0	2	2	2	0	HEAT-like	repeat
Kinase-like	PF14531.6	gi|529076753|ref|YP_008375756.1|	-	0.15	11.4	0.0	0.22	10.8	0.0	1.2	1	0	0	1	1	1	0	Kinase-like
EI24	PF07264.11	gi|529076754|ref|YP_008375757.1|	-	0.14	12.4	14.8	0.47	10.7	14.8	1.9	1	1	0	1	1	1	0	Etoposide-induced	protein	2.4	(EI24)
Glycos_transf_4	PF00953.21	gi|529076754|ref|YP_008375757.1|	-	0.27	11.2	10.6	0.064	13.2	5.9	2.3	2	1	0	2	2	2	0	Glycosyl	transferase	family	4
DUF1118	PF06549.12	gi|529076754|ref|YP_008375757.1|	-	1.9	8.8	9.3	0.16	12.3	1.0	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1118)
Tetraspanin	PF00335.20	gi|529076754|ref|YP_008375757.1|	-	4.5	6.9	12.5	0.071	12.8	1.3	2.3	2	0	0	2	2	2	0	Tetraspanin	family
GDPD	PF03009.17	gi|529076755|ref|YP_008375758.1|	-	5.9e-29	101.6	0.2	3.5e-26	92.5	0.2	2.0	1	1	0	1	1	1	1	Glycerophosphoryl	diester	phosphodiesterase	family
GDPD_2	PF13653.6	gi|529076755|ref|YP_008375758.1|	-	0.058	13.9	0.0	0.15	12.5	0.0	1.7	1	0	0	1	1	1	0	Glycerophosphoryl	diester	phosphodiesterase	family
ocr	PF08684.10	gi|529076755|ref|YP_008375758.1|	-	0.1	13.1	0.2	0.23	11.9	0.2	1.6	1	1	0	1	1	1	0	DNA	mimic	ocr
Importin_rep_6	PF18829.1	gi|529076756|ref|YP_008375759.1|	-	0.1	12.8	1.2	0.15	12.2	0.2	1.7	2	0	0	2	2	2	0	Importin	repeat	6
FtsA	PF14450.6	gi|529076757|ref|YP_008375760.1|	-	0.019	15.4	0.0	0.045	14.2	0.0	1.6	2	0	0	2	2	2	0	Cell	division	protein	FtsA
MDMPI_N	PF11716.8	gi|529076759|ref|YP_008375762.1|	-	10	6.8	12.2	3.8	8.2	6.2	2.6	1	1	1	2	2	2	0	Mycothiol	maleylpyruvate	isomerase	N-terminal	domain
CoA_binding	PF02629.19	gi|529076760|ref|YP_008375763.1|	-	1.3e-24	86.7	0.5	1.3e-24	86.7	0.5	2.0	3	0	0	3	3	3	1	CoA	binding	domain
Ligase_CoA	PF00549.19	gi|529076760|ref|YP_008375763.1|	-	4.3e-16	59.1	1.4	4.3e-16	59.1	1.4	1.8	2	0	0	2	2	2	1	CoA-ligase
Succ_CoA_lig	PF13607.6	gi|529076760|ref|YP_008375763.1|	-	2.3e-11	43.7	0.1	4e-11	42.9	0.1	1.4	1	0	0	1	1	1	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.6	gi|529076760|ref|YP_008375763.1|	-	3.7e-07	30.7	0.2	2.1e-06	28.2	0.1	2.1	2	1	0	2	2	2	1	CoA	binding	domain
GFO_IDH_MocA	PF01408.22	gi|529076760|ref|YP_008375763.1|	-	0.075	13.9	0.3	0.26	12.1	0.2	2.1	2	1	0	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Peptidase_C41	PF05417.11	gi|529076760|ref|YP_008375763.1|	-	0.21	11.4	0.7	0.44	10.3	0.2	1.8	2	0	0	2	2	2	0	Hepatitis	E	cysteine	protease
ATP-grasp_2	PF08442.10	gi|529076761|ref|YP_008375764.1|	-	4e-63	212.6	0.1	6.6e-63	211.9	0.1	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_5	PF13549.6	gi|529076761|ref|YP_008375764.1|	-	3.7e-20	72.3	2.2	8.1e-20	71.2	0.9	2.0	2	0	0	2	2	2	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|529076761|ref|YP_008375764.1|	-	7.3e-13	48.5	2.9	1.7e-10	40.8	0.3	2.4	3	0	0	3	3	3	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Ligase_CoA	PF00549.19	gi|529076761|ref|YP_008375764.1|	-	3.7e-11	43.1	0.6	8.5e-11	41.9	0.6	1.5	1	0	0	1	1	1	1	CoA-ligase
ATP-grasp	PF02222.22	gi|529076761|ref|YP_008375764.1|	-	3.3e-06	26.8	0.0	6e-06	25.9	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
GARS_A	PF01071.19	gi|529076761|ref|YP_008375764.1|	-	0.00012	22.0	0.1	0.0002	21.2	0.1	1.3	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
YbaB_DNA_bd	PF02575.16	gi|529076761|ref|YP_008375764.1|	-	7.9	6.8	9.2	0.12	12.6	0.8	2.5	4	0	0	4	4	4	0	YbaB/EbfC	DNA-binding	family
Methyltransf_11	PF08241.12	gi|529076763|ref|YP_008375766.1|	-	9.8e-12	45.4	0.0	1.6e-11	44.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|529076763|ref|YP_008375766.1|	-	7.7e-11	42.6	0.0	1.4e-10	41.7	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|529076763|ref|YP_008375766.1|	-	1.6e-05	24.8	0.0	2.3e-05	24.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_2	PF00891.18	gi|529076763|ref|YP_008375766.1|	-	0.00049	19.4	0.0	0.00067	19.0	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase	domain
Methyltransf_31	PF13847.6	gi|529076763|ref|YP_008375766.1|	-	0.0011	18.8	0.0	0.041	13.7	0.0	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|529076763|ref|YP_008375766.1|	-	0.0057	17.4	0.0	0.023	15.4	0.0	2.0	2	1	0	2	2	2	1	Methyltransferase	domain
RrnaAD	PF00398.20	gi|529076763|ref|YP_008375766.1|	-	0.027	13.5	0.0	0.038	13.0	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
FtsJ	PF01728.19	gi|529076763|ref|YP_008375766.1|	-	0.055	13.6	0.0	0.069	13.2	0.0	1.3	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
DREV	PF05219.12	gi|529076763|ref|YP_008375766.1|	-	0.07	12.2	0.0	0.097	11.8	0.0	1.2	1	0	0	1	1	1	0	DREV	methyltransferase
TraB	PF01963.17	gi|529076764|ref|YP_008375767.1|	-	2.1e-28	100.0	0.0	1.4e-17	64.5	0.0	2.1	2	0	0	2	2	2	2	TraB	family
DUF997	PF06196.12	gi|529076764|ref|YP_008375767.1|	-	0.058	13.4	0.4	0.058	13.4	0.4	2.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF997)
Peptidase_M50	PF02163.22	gi|529076765|ref|YP_008375768.1|	-	3e-05	23.4	12.4	0.034	13.4	0.4	3.0	1	1	1	2	2	2	2	Peptidase	family	M50
DUF3267	PF11667.8	gi|529076765|ref|YP_008375768.1|	-	9.6	6.5	10.5	0.37	11.1	3.1	2.5	3	1	0	3	3	3	0	Putative	zincin	peptidase
SCP2_2	PF13530.6	gi|529076766|ref|YP_008375769.1|	-	6.4e-23	81.1	0.0	1.5e-22	79.9	0.0	1.7	1	0	0	1	1	1	1	Sterol	carrier	protein	domain
Acetyltransf_17	PF17668.1	gi|529076766|ref|YP_008375769.1|	-	7.3e-22	78.4	3.2	1.8e-21	77.1	3.2	1.7	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|529076766|ref|YP_008375769.1|	-	7.4e-22	77.8	0.1	1.9e-21	76.4	0.0	1.7	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
MetallophosC	PF16370.5	gi|529076766|ref|YP_008375769.1|	-	0.029	14.6	0.0	0.049	13.9	0.0	1.3	1	0	0	1	1	1	0	C	terminal	of	Calcineurin-like	phosphoesterase
AIRS_C	PF02769.22	gi|529076767|ref|YP_008375770.1|	-	5e-23	82.0	0.0	8.3e-23	81.2	0.0	1.3	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|529076767|ref|YP_008375770.1|	-	7.4e-13	49.0	3.7	1.4e-12	48.1	3.2	1.7	2	0	0	2	2	2	1	AIR	synthase	related	protein,	N-terminal	domain
Usp	PF00582.26	gi|529076768|ref|YP_008375771.1|	-	2.5e-34	118.8	0.3	2.8e-34	118.7	0.3	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Toprim_3	PF13362.6	gi|529076768|ref|YP_008375771.1|	-	0.045	14.1	1.2	0.086	13.2	0.4	1.9	1	1	1	2	2	2	0	Toprim	domain
DUF2114	PF09887.9	gi|529076768|ref|YP_008375771.1|	-	0.053	12.0	0.1	0.059	11.9	0.1	1.0	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2114)
tRNA-Thr_ED	PF08915.11	gi|529076769|ref|YP_008375772.1|	-	4.1e-49	166.2	0.0	9.4e-49	165.0	0.0	1.6	2	0	0	2	2	2	1	Archaea-specific	editing	domain	of	threonyl-tRNA	synthetase
HGTP_anticodon	PF03129.20	gi|529076769|ref|YP_008375772.1|	-	3e-19	68.9	0.6	6.6e-19	67.9	0.2	1.9	2	0	0	2	2	2	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|529076769|ref|YP_008375772.1|	-	4.7e-16	59.3	0.0	8.4e-16	58.5	0.0	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
DUF2892	PF11127.8	gi|529076770|ref|YP_008375773.1|	-	6e-17	61.4	2.9	8.1e-17	61.0	2.9	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2892)
RhodobacterPufX	PF11511.8	gi|529076770|ref|YP_008375773.1|	-	0.18	11.4	1.0	0.29	10.8	1.0	1.3	1	0	0	1	1	1	0	Intrinsic	membrane	protein	PufX
TMEM100	PF16311.5	gi|529076770|ref|YP_008375773.1|	-	2.4	7.7	6.5	3.2	7.3	6.3	1.3	1	1	0	1	1	1	0	Transmembrane	protein	100
PspA_IM30	PF04012.12	gi|529076771|ref|YP_008375774.1|	-	1.2e-28	100.3	35.0	1.2e-28	100.3	35.0	1.4	1	1	1	2	2	2	1	PspA/IM30	family
YabA	PF06156.13	gi|529076771|ref|YP_008375774.1|	-	0.00085	19.9	22.9	0.028	15.0	3.1	3.3	1	1	2	3	3	3	2	Initiation	control	protein	YabA
Snf7	PF03357.21	gi|529076771|ref|YP_008375774.1|	-	0.0013	18.3	19.4	0.0013	18.3	19.4	4.1	1	1	2	3	3	2	1	Snf7
Spc7	PF08317.11	gi|529076771|ref|YP_008375774.1|	-	0.0026	16.7	23.1	0.0026	16.7	23.1	2.5	1	1	2	3	3	3	1	Spc7	kinetochore	protein
APG6_N	PF17675.1	gi|529076771|ref|YP_008375774.1|	-	0.0068	16.9	11.1	0.0068	16.9	11.1	4.1	2	2	1	3	3	2	2	Apg6	coiled-coil	region
DUF3535	PF12054.8	gi|529076771|ref|YP_008375774.1|	-	0.042	13.1	6.6	0.068	12.4	6.6	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3535)
ERM	PF00769.19	gi|529076771|ref|YP_008375774.1|	-	0.071	12.9	41.5	0.14	12.0	41.5	1.5	1	1	0	1	1	1	0	Ezrin/radixin/moesin	family
FTA4	PF13093.6	gi|529076771|ref|YP_008375774.1|	-	0.23	11.3	24.6	33	4.3	17.2	3.3	1	1	1	2	2	2	0	Kinetochore	complex	Fta4	of	Sim4	subunit,	or	CENP-50
Prominin	PF05478.11	gi|529076771|ref|YP_008375774.1|	-	0.54	8.1	10.1	0.74	7.7	10.1	1.3	1	0	0	1	1	1	0	Prominin
FAM184	PF15665.5	gi|529076771|ref|YP_008375774.1|	-	0.78	9.5	39.5	3.7	7.3	5.2	2.6	1	1	1	2	2	2	0	Family	with	sequence	similarity	184,	A	and	B
DUF1664	PF07889.12	gi|529076771|ref|YP_008375774.1|	-	1.8	8.6	18.9	26	4.9	6.6	3.3	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1664)
DHR10	PF18595.1	gi|529076771|ref|YP_008375774.1|	-	2	8.5	40.6	0.17	11.9	15.6	3.3	1	1	1	3	3	3	0	Designed	helical	repeat	protein	10	domain
COG5	PF10392.9	gi|529076771|ref|YP_008375774.1|	-	2.9	8.1	12.8	5.3	7.2	7.8	2.7	1	1	2	3	3	3	0	Golgi	transport	complex	subunit	5
YlqD	PF11068.8	gi|529076771|ref|YP_008375774.1|	-	2.9	8.3	32.0	0.5	10.7	13.1	3.1	1	1	2	3	3	3	0	YlqD	protein
DUF3584	PF12128.8	gi|529076771|ref|YP_008375774.1|	-	4.3	4.7	40.8	9.1	3.6	40.8	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
DUF5082	PF16888.5	gi|529076771|ref|YP_008375774.1|	-	4.4	7.6	26.1	1.2	9.4	10.9	3.4	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF5082)
FapA	PF03961.13	gi|529076771|ref|YP_008375774.1|	-	5.2	5.6	23.4	0.46	9.0	10.0	2.6	1	1	1	2	2	2	0	Flagellar	Assembly	Protein	A
MerR-DNA-bind	PF09278.11	gi|529076771|ref|YP_008375774.1|	-	5.6	7.6	20.0	18	5.9	0.1	4.6	4	1	0	4	4	4	0	MerR,	DNA	binding
DUF3450	PF11932.8	gi|529076771|ref|YP_008375774.1|	-	6.1	6.1	34.8	0.13	11.5	5.8	3.5	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF3450)
Exonuc_VII_L	PF02601.15	gi|529076771|ref|YP_008375774.1|	-	7.1	6.1	24.6	1.1e+02	2.3	24.6	2.2	1	1	0	1	1	1	0	Exonuclease	VII,	large	subunit
CTP_synth_N	PF06418.14	gi|529076772|ref|YP_008375775.1|	-	2.5e-124	413.8	0.1	3.3e-124	413.5	0.1	1.2	1	0	0	1	1	1	1	CTP	synthase	N-terminus
GATase	PF00117.28	gi|529076772|ref|YP_008375775.1|	-	5e-52	176.4	0.0	7.9e-52	175.8	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
CbiA	PF01656.23	gi|529076772|ref|YP_008375775.1|	-	0.0004	20.4	0.0	0.0011	19.0	0.0	1.9	2	0	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Peptidase_C26	PF07722.13	gi|529076772|ref|YP_008375775.1|	-	0.0088	15.8	0.0	0.032	14.0	0.0	2.0	1	1	0	1	1	1	1	Peptidase	C26
PQQ_2	PF13360.6	gi|529076773|ref|YP_008375776.1|	-	9.7e-34	117.0	14.4	4.2e-18	65.8	4.7	2.9	1	1	2	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.6	gi|529076773|ref|YP_008375776.1|	-	1.8e-20	72.7	22.7	1.2e-06	28.8	0.0	8.7	8	1	0	8	8	8	6	PQQ-like	domain
PQQ	PF01011.21	gi|529076773|ref|YP_008375776.1|	-	9.2e-16	56.9	7.1	0.0035	17.2	0.1	6.4	6	1	0	6	6	6	4	PQQ	enzyme	repeat
DUF4905	PF16248.5	gi|529076773|ref|YP_008375776.1|	-	0.15	12.0	0.3	62	3.6	0.0	4.3	5	1	0	5	5	5	0	Domain	of	unknown	function	(DUF4905)
GMP_synt_C	PF00958.22	gi|529076774|ref|YP_008375777.1|	-	1.5e-29	101.9	0.4	5.3e-29	100.1	0.2	1.9	2	0	0	2	2	2	1	GMP	synthase	C	terminal	domain
NAD_synthase	PF02540.17	gi|529076774|ref|YP_008375777.1|	-	1.2e-07	31.1	0.0	0.00012	21.3	0.0	2.2	2	0	0	2	2	2	2	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|529076774|ref|YP_008375777.1|	-	0.00033	19.5	0.0	0.012	14.5	0.0	2.2	2	0	0	2	2	2	1	tRNA	methyl	transferase
QueC	PF06508.13	gi|529076774|ref|YP_008375777.1|	-	0.0015	18.0	0.0	0.01	15.4	0.0	2.0	1	1	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
ThiI	PF02568.14	gi|529076774|ref|YP_008375777.1|	-	0.037	13.6	0.0	0.091	12.3	0.0	1.7	1	1	0	1	1	1	0	Thiamine	biosynthesis	protein	(ThiI)
Asn_synthase	PF00733.21	gi|529076774|ref|YP_008375777.1|	-	0.083	12.5	0.0	0.13	11.9	0.0	1.3	1	0	0	1	1	1	0	Asparagine	synthase
PGBA_C	PF15437.6	gi|529076774|ref|YP_008375777.1|	-	0.61	10.5	0.1	0.61	10.5	0.1	1.9	2	0	0	2	2	2	0	Plasminogen-binding	protein	pgbA	C-terminal
TrkA_N	PF02254.18	gi|529076775|ref|YP_008375778.1|	-	0.00012	22.3	1.1	0.00014	22.1	1.1	1.1	1	0	0	1	1	1	1	TrkA-N	domain
Lactamase_B	PF00753.27	gi|529076776|ref|YP_008375779.1|	-	1e-28	100.7	3.2	1.2e-28	100.5	3.2	1.1	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_5	PF14597.6	gi|529076776|ref|YP_008375779.1|	-	0.00011	21.8	0.0	0.00025	20.6	0.0	1.7	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
MoCF_biosynth	PF00994.24	gi|529076778|ref|YP_008375781.1|	-	1.8e-16	60.1	1.6	6.7e-16	58.2	0.6	1.9	1	1	1	2	2	2	1	Probable	molybdopterin	binding	domain
baeRF_family10	PF18854.1	gi|529076778|ref|YP_008375781.1|	-	0.039	14.2	0.3	0.039	14.2	0.3	1.8	2	1	0	2	2	2	0	Bacterial	archaeo-eukaryotic	release	factor	family	10
eIF-3c_N	PF05470.12	gi|529076778|ref|YP_008375781.1|	-	1.6	7.0	2.8	2	6.6	2.8	1.0	1	0	0	1	1	1	0	Eukaryotic	translation	initiation	factor	3	subunit	8	N-terminus
MHYT	PF03707.16	gi|529076779|ref|YP_008375782.1|	-	1.8	8.8	7.2	3.4	7.9	0.3	2.1	1	1	1	2	2	2	0	Bacterial	signalling	protein	N	terminal	repeat
HisKA_7TM	PF16927.5	gi|529076780|ref|YP_008375783.1|	-	1.9e-50	171.9	17.9	2.5e-50	171.5	17.9	1.1	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
HATPase_c	PF02518.26	gi|529076780|ref|YP_008375783.1|	-	1.7e-12	47.8	0.1	3.8e-12	46.7	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|529076780|ref|YP_008375783.1|	-	6.7e-11	42.2	0.1	1.2e-10	41.4	0.1	1.4	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS	PF00989.25	gi|529076780|ref|YP_008375783.1|	-	3.9e-06	26.8	0.0	1.5e-05	25.0	0.0	2.0	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.7	gi|529076780|ref|YP_008375783.1|	-	0.00011	22.1	0.1	0.00034	20.5	0.1	1.8	1	0	0	1	1	1	1	PAS	domain
HisKA_4TM	PF16926.5	gi|529076780|ref|YP_008375783.1|	-	0.00028	20.5	0.1	0.00028	20.5	0.1	2.7	3	0	0	3	3	3	1	Archaeal	4TM	region	of	histidine	kinase
PAS_9	PF13426.7	gi|529076780|ref|YP_008375783.1|	-	0.0011	19.2	0.0	0.0053	17.0	0.0	2.2	2	0	0	2	2	2	1	PAS	domain
Myosin_N	PF02736.19	gi|529076780|ref|YP_008375783.1|	-	0.002	17.9	2.8	0.016	15.0	0.2	2.8	2	0	0	2	2	2	1	Myosin	N-terminal	SH3-like	domain
PAS_4	PF08448.10	gi|529076780|ref|YP_008375783.1|	-	0.0043	17.3	0.5	0.018	15.3	0.1	2.4	2	1	0	2	2	2	1	PAS	fold
HisKA	PF00512.25	gi|529076780|ref|YP_008375783.1|	-	0.058	13.4	0.1	0.15	12.1	0.1	1.8	1	0	0	1	1	1	0	His	Kinase	A	(phospho-acceptor)	domain
DUF2070	PF09843.9	gi|529076780|ref|YP_008375783.1|	-	7.7	4.7	8.3	11	4.1	7.9	1.4	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
NUDIX	PF00293.28	gi|529076781|ref|YP_008375784.1|	-	8.5e-14	51.7	0.8	1e-13	51.4	0.8	1.1	1	0	0	1	1	1	1	NUDIX	domain
HTH_AsnC-type	PF13404.6	gi|529076782|ref|YP_008375785.1|	-	4e-17	61.8	0.7	7.6e-17	60.9	0.7	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|529076782|ref|YP_008375785.1|	-	1.8e-15	56.2	0.2	3e-15	55.5	0.2	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.21	gi|529076782|ref|YP_008375785.1|	-	2.4e-09	37.0	1.0	3.9e-09	36.3	1.0	1.4	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_20	PF12840.7	gi|529076782|ref|YP_008375785.1|	-	1.2e-05	25.3	0.0	2.8e-05	24.1	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|529076782|ref|YP_008375785.1|	-	0.00013	21.5	0.2	0.00027	20.4	0.2	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
Sigma70_r4_2	PF08281.12	gi|529076782|ref|YP_008375785.1|	-	0.00018	21.1	0.0	0.00052	19.6	0.0	1.8	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_Tnp_ISL3	PF13542.6	gi|529076782|ref|YP_008375785.1|	-	0.00053	19.4	0.0	0.001	18.4	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_11	PF08279.12	gi|529076782|ref|YP_008375785.1|	-	0.0007	19.5	0.1	0.001	19.0	0.1	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_IclR	PF09339.10	gi|529076782|ref|YP_008375785.1|	-	0.0017	18.1	0.0	0.0033	17.2	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_23	PF13384.6	gi|529076782|ref|YP_008375785.1|	-	0.0027	17.4	0.0	0.0047	16.7	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_DeoR	PF08220.12	gi|529076782|ref|YP_008375785.1|	-	0.0033	17.1	0.2	0.0058	16.4	0.2	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
MarR	PF01047.22	gi|529076782|ref|YP_008375785.1|	-	0.0041	17.0	0.1	0.0086	16.0	0.0	1.5	2	0	0	2	2	1	1	MarR	family
MarR_2	PF12802.7	gi|529076782|ref|YP_008375785.1|	-	0.0052	16.6	0.1	0.0086	16.0	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HrcA_DNA-bdg	PF03444.15	gi|529076782|ref|YP_008375785.1|	-	0.016	14.9	0.0	0.029	14.0	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
HTH_28	PF13518.6	gi|529076782|ref|YP_008375785.1|	-	0.024	14.8	0.0	0.039	14.1	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
FaeA	PF04703.12	gi|529076782|ref|YP_008375785.1|	-	0.029	14.8	0.0	0.047	14.1	0.0	1.3	1	0	0	1	1	1	0	FaeA-like	protein
MIase	PF02426.16	gi|529076782|ref|YP_008375785.1|	-	0.033	14.3	0.1	0.74	10.0	0.0	2.1	1	1	1	2	2	2	0	Muconolactone	delta-isomerase
DUF746	PF05344.11	gi|529076782|ref|YP_008375785.1|	-	0.037	13.9	0.1	0.23	11.3	0.0	2.1	2	0	0	2	2	2	0	Domain	of	Unknown	Function	(DUF746)
HTH_5	PF01022.20	gi|529076782|ref|YP_008375785.1|	-	0.04	13.8	0.0	0.063	13.1	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_Mga	PF08280.11	gi|529076782|ref|YP_008375785.1|	-	0.049	13.7	0.0	0.084	12.9	0.0	1.4	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_40	PF14493.6	gi|529076782|ref|YP_008375785.1|	-	0.076	13.5	0.0	0.11	12.9	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_38	PF13936.6	gi|529076782|ref|YP_008375785.1|	-	0.079	12.7	0.0	0.16	11.7	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
TrmB	PF01978.19	gi|529076782|ref|YP_008375785.1|	-	0.086	12.7	0.0	0.16	11.8	0.0	1.5	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Stk19	PF10494.9	gi|529076782|ref|YP_008375785.1|	-	0.13	12.0	0.1	0.61	9.7	0.1	1.8	2	0	0	2	2	2	0	Serine-threonine	protein	kinase	19
GerE	PF00196.19	gi|529076782|ref|YP_008375785.1|	-	0.13	11.8	0.0	0.32	10.6	0.0	1.7	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
GATase	PF00117.28	gi|529076783|ref|YP_008375786.1|	-	5.4e-36	124.1	0.0	7.4e-36	123.7	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
CPSase_sm_chain	PF00988.22	gi|529076783|ref|YP_008375786.1|	-	6.2e-36	123.0	0.0	2e-35	121.4	0.0	1.9	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthase	small	chain,	CPSase	domain
Peptidase_C26	PF07722.13	gi|529076783|ref|YP_008375786.1|	-	2.4e-05	24.2	0.2	0.022	14.5	0.1	2.3	1	1	1	2	2	2	2	Peptidase	C26
UPF0179	PF03684.13	gi|529076784|ref|YP_008375787.1|	-	8.1e-48	161.9	0.0	9e-48	161.7	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0179)
DDE_Tnp_1_6	PF13751.6	gi|529076784|ref|YP_008375787.1|	-	0.0082	16.4	0.2	0.02	15.1	0.0	1.7	2	0	0	2	2	2	1	Transposase	DDE	domain
LRV_FeS	PF05484.11	gi|529076784|ref|YP_008375787.1|	-	0.08	13.0	2.9	4.1	7.5	0.2	2.9	3	0	0	3	3	3	0	LRV	protein	FeS4	cluster
UPF0047	PF01894.17	gi|529076786|ref|YP_008375789.1|	-	5.8e-35	119.9	0.0	6.7e-35	119.7	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0047
Nop	PF01798.18	gi|529076787|ref|YP_008375790.1|	-	2.8e-39	134.9	0.0	6.1e-39	133.8	0.0	1.5	1	1	0	1	1	1	1	snoRNA	binding	domain,	fibrillarin
Microcephalin	PF12258.8	gi|529076787|ref|YP_008375790.1|	-	0.12	11.6	0.4	0.15	11.2	0.4	1.1	1	0	0	1	1	1	0	Microcephalin	protein
DUF2383	PF09537.10	gi|529076787|ref|YP_008375790.1|	-	0.17	12.2	1.9	1	9.7	0.2	2.4	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF2383)
Fibrillarin	PF01269.17	gi|529076788|ref|YP_008375791.1|	-	8.2e-55	185.4	0.0	9.5e-55	185.2	0.0	1.0	1	0	0	1	1	1	1	Fibrillarin
Histidinol_dh	PF00815.20	gi|529076788|ref|YP_008375791.1|	-	0.063	12.3	0.1	0.079	12.0	0.1	1.1	1	0	0	1	1	1	0	Histidinol	dehydrogenase
GCS2	PF04107.13	gi|529076789|ref|YP_008375792.1|	-	1.6e-68	231.2	0.2	1.9e-68	230.9	0.2	1.0	1	0	0	1	1	1	1	Glutamate-cysteine	ligase	family	2(GCS2)
DUF3322	PF11795.8	gi|529076789|ref|YP_008375792.1|	-	0.021	14.8	0.3	2.4	8.1	0.0	2.3	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	N-term	(DUF3322)
HTH_24	PF13412.6	gi|529076790|ref|YP_008375793.1|	-	1.4e-06	27.7	0.0	2.2e-06	27.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|529076790|ref|YP_008375793.1|	-	1.7e-06	27.8	0.1	2.8e-06	27.1	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|529076790|ref|YP_008375793.1|	-	4.1e-05	23.5	0.1	6.8e-05	22.8	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
TFIIE_alpha	PF02002.17	gi|529076790|ref|YP_008375793.1|	-	0.00076	19.3	0.0	0.0013	18.5	0.0	1.5	1	1	0	1	1	1	1	TFIIE	alpha	subunit
GntR	PF00392.21	gi|529076790|ref|YP_008375793.1|	-	0.00096	18.8	0.0	0.0022	17.6	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.20	gi|529076790|ref|YP_008375793.1|	-	0.0039	17.0	0.0	0.0078	16.1	0.0	1.5	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|529076790|ref|YP_008375793.1|	-	0.0062	16.4	0.1	0.011	15.6	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|529076790|ref|YP_008375793.1|	-	0.01	15.8	0.0	0.016	15.1	0.0	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|529076790|ref|YP_008375793.1|	-	0.01	15.6	0.0	0.017	14.9	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
SHOCT	PF09851.9	gi|529076790|ref|YP_008375793.1|	-	0.057	13.2	0.7	0.34	10.7	0.1	2.2	2	0	0	2	2	2	0	Short	C-terminal	domain
Ferritin	PF00210.24	gi|529076790|ref|YP_008375793.1|	-	0.065	13.2	0.2	0.15	12.0	0.2	1.6	1	0	0	1	1	1	0	Ferritin-like	domain
HTH_AsnC-type	PF13404.6	gi|529076790|ref|YP_008375793.1|	-	0.093	12.6	0.3	0.37	10.7	0.0	2.1	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
Rrf2	PF02082.20	gi|529076790|ref|YP_008375793.1|	-	0.12	12.7	0.0	0.22	11.9	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_42	PF06224.12	gi|529076790|ref|YP_008375793.1|	-	0.13	11.7	1.6	0.72	9.3	0.1	2.0	1	1	1	2	2	2	0	Winged	helix	DNA-binding	domain
CTP_transf_like	PF01467.26	gi|529076791|ref|YP_008375794.1|	-	2.5e-13	50.5	0.0	3e-13	50.2	0.0	1.1	1	0	0	1	1	1	1	Cytidylyltransferase-like
FAD_syn	PF06574.12	gi|529076791|ref|YP_008375794.1|	-	0.002	18.0	0.2	0.023	14.6	0.1	2.1	2	0	0	2	2	2	1	FAD	synthetase
TFIIB	PF00382.19	gi|529076792|ref|YP_008375795.1|	-	8e-08	32.2	0.4	1.7e-07	31.1	0.4	1.5	1	1	0	1	1	1	1	Transcription	factor	TFIIB	repeat
HTH_28	PF13518.6	gi|529076792|ref|YP_008375795.1|	-	0.00054	20.0	0.4	0.0033	17.5	0.1	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|529076792|ref|YP_008375795.1|	-	0.0026	17.6	0.8	0.0026	17.6	0.8	2.0	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_23	PF13384.6	gi|529076792|ref|YP_008375795.1|	-	0.0067	16.2	0.3	0.014	15.2	0.1	1.7	2	0	0	2	2	2	1	Homeodomain-like	domain
Sigma70_r4	PF04545.16	gi|529076792|ref|YP_008375795.1|	-	0.02	14.4	0.1	0.052	13.1	0.1	1.8	2	1	0	2	2	2	0	Sigma-70,	region	4
HTH_30	PF13556.6	gi|529076792|ref|YP_008375795.1|	-	0.046	13.5	0.0	0.099	12.5	0.0	1.6	2	0	0	2	2	2	0	PucR	C-terminal	helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.6	gi|529076792|ref|YP_008375795.1|	-	0.084	12.3	0.5	0.74	9.3	0.2	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
PQQ_3	PF13570.6	gi|529076793|ref|YP_008375796.1|	-	9.6e-44	146.8	26.7	3e-10	40.2	0.1	8.1	8	1	0	8	8	8	6	PQQ-like	domain
PQQ	PF01011.21	gi|529076793|ref|YP_008375796.1|	-	2.1e-34	115.8	11.5	1.5e-08	34.1	0.2	7.2	8	0	0	8	8	8	5	PQQ	enzyme	repeat
PQQ_2	PF13360.6	gi|529076793|ref|YP_008375796.1|	-	9.7e-33	113.7	9.8	1.8e-19	70.3	1.1	3.0	2	1	1	3	3	3	3	PQQ-like	domain
PepSY	PF03413.19	gi|529076793|ref|YP_008375796.1|	-	0.063	13.9	2.5	1.4	9.6	0.1	3.4	3	0	0	3	3	3	0	Peptidase	propeptide	and	YPEB	domain
DUF2797	PF10977.8	gi|529076794|ref|YP_008375797.1|	-	8.1e-25	88.1	5.4	5e-21	75.7	1.7	2.2	1	1	0	2	2	2	2	Protein	of	unknown	function	(DUF2797)
DUF624	PF04854.14	gi|529076796|ref|YP_008375799.1|	-	0.2	11.8	1.4	0.59	10.3	0.2	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function,	DUF624
Paf67	PF10255.9	gi|529076796|ref|YP_008375799.1|	-	0.25	10.3	0.0	0.28	10.1	0.0	1.0	1	0	0	1	1	1	0	RNA	polymerase	I-associated	factor	PAF67
DUF4140	PF13600.6	gi|529076797|ref|YP_008375800.1|	-	0.55	10.7	4.8	1.5	9.3	0.1	2.1	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
SLATT_3	PF18184.1	gi|529076797|ref|YP_008375800.1|	-	1.2	9.3	2.8	0.9	9.7	0.7	1.7	2	0	0	2	2	2	0	SMODS	and	SLOG-associating	2TM	effector	domain	3
Cwf_Cwc_15	PF04889.12	gi|529076797|ref|YP_008375800.1|	-	1.6	8.4	14.2	0.15	11.8	5.6	2.0	2	0	0	2	2	2	0	Cwf15/Cwc15	cell	cycle	control	protein
Fer2	PF00111.27	gi|529076798|ref|YP_008375801.1|	-	4.2e-11	42.6	0.5	7.3e-11	41.9	0.5	1.4	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.6	gi|529076798|ref|YP_008375801.1|	-	0.079	13.0	0.0	0.14	12.2	0.0	1.5	1	1	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
DUF1082	PF06449.11	gi|529076799|ref|YP_008375802.1|	-	0.0056	16.5	0.9	0.0062	16.3	0.9	1.1	1	0	0	1	1	1	1	Mitochondrial	domain	of	unknown	function	(DUF1082)
Thiolase_N	PF00108.23	gi|529076800|ref|YP_008375803.1|	-	1.1e-30	106.9	1.7	1.3e-29	103.3	1.7	2.2	1	1	0	1	1	1	1	Thiolase,	N-terminal	domain
ketoacyl-synt	PF00109.26	gi|529076800|ref|YP_008375803.1|	-	5.8e-11	42.5	8.9	2.5e-09	37.1	2.2	3.4	2	2	2	4	4	4	2	Beta-ketoacyl	synthase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|529076800|ref|YP_008375803.1|	-	1.5e-08	34.4	2.1	3.5e-08	33.1	0.1	2.6	3	0	0	3	3	3	1	Thiolase,	C-terminal	domain
Ketoacyl-synt_C	PF02801.22	gi|529076800|ref|YP_008375803.1|	-	0.002	18.1	1.0	0.027	14.5	0.6	2.9	2	1	0	2	2	2	1	Beta-ketoacyl	synthase,	C-terminal	domain
OB_aCoA_assoc	PF01796.17	gi|529076801|ref|YP_008375804.1|	-	4.8e-09	36.1	1.1	8.2e-09	35.3	1.1	1.4	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
DUF35_N	PF12172.8	gi|529076801|ref|YP_008375804.1|	-	0.00015	21.5	0.3	0.00025	20.8	0.3	1.4	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Ribosomal_L19	PF01245.20	gi|529076801|ref|YP_008375804.1|	-	0.055	13.4	0.0	0.081	12.9	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L19
AICARFT_IMPCHas	PF01808.18	gi|529076802|ref|YP_008375805.1|	-	1.1e-86	290.9	0.0	1.5e-86	290.5	0.0	1.1	1	0	0	1	1	1	1	AICARFT/IMPCHase	bienzyme
Formyl_trans_N	PF00551.19	gi|529076802|ref|YP_008375805.1|	-	1e-41	142.6	0.1	2.2e-41	141.6	0.0	1.6	2	0	0	2	2	2	1	Formyl	transferase
Ribosomal_L11	PF00298.19	gi|529076802|ref|YP_008375805.1|	-	0.019	15.5	0.3	0.036	14.6	0.3	1.4	1	0	0	1	1	1	0	Ribosomal	protein	L11,	RNA	binding	domain
NIR_SIR	PF01077.22	gi|529076803|ref|YP_008375806.1|	-	0.092	12.3	0.1	0.22	11.0	0.0	1.7	2	0	0	2	2	2	0	Nitrite	and	sulphite	reductase	4Fe-4S	domain
Mt_ATP-synt_B	PF05405.14	gi|529076803|ref|YP_008375806.1|	-	0.36	10.4	3.3	0.69	9.5	3.3	1.4	1	0	0	1	1	1	0	Mitochondrial	ATP	synthase	B	chain	precursor	(ATP-synt_B)
DUF3558	PF12079.8	gi|529076803|ref|YP_008375806.1|	-	0.84	9.6	10.7	0.042	13.8	4.8	2.0	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3558)
LPAM_1	PF08139.12	gi|529076803|ref|YP_008375806.1|	-	6.1	7.5	5.1	20	5.9	5.1	1.8	1	1	0	1	1	1	0	Prokaryotic	membrane	lipoprotein	lipid	attachment	site
MLTD_N	PF06474.12	gi|529076804|ref|YP_008375807.1|	-	0.087	13.0	0.5	0.17	12.1	0.5	1.5	1	0	0	1	1	1	0	MltD	lipid	attachment	motif
Pterin_bind	PF00809.22	gi|529076805|ref|YP_008375808.1|	-	6.8e-82	274.8	0.5	1e-81	274.2	0.5	1.3	1	0	0	1	1	1	1	Pterin	binding	enzyme
Mur_ligase_M	PF08245.12	gi|529076805|ref|YP_008375808.1|	-	5.4e-12	46.1	0.0	9.6e-12	45.3	0.0	1.4	1	0	0	1	1	1	1	Mur	ligase	middle	domain
Mur_ligase_C	PF02875.21	gi|529076805|ref|YP_008375808.1|	-	2.4e-08	34.1	0.0	7.4e-08	32.5	0.0	1.9	1	0	0	1	1	1	1	Mur	ligase	family,	glutamate	ligase	domain
PEP_mutase	PF13714.6	gi|529076805|ref|YP_008375808.1|	-	0.00066	19.2	1.4	0.27	10.7	0.0	3.2	3	0	0	3	3	3	2	Phosphoenolpyruvate	phosphomutase
RHH_1	PF01402.21	gi|529076806|ref|YP_008375809.1|	-	0.0014	18.5	0.0	0.0058	16.5	0.0	2.0	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
HicB_lk_antitox	PF15919.5	gi|529076806|ref|YP_008375809.1|	-	0.14	12.3	0.0	0.25	11.4	0.0	1.4	2	0	0	2	2	2	0	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
Glyco_transf_4	PF13439.6	gi|529076807|ref|YP_008375810.1|	-	3.2e-22	79.3	0.4	6.4e-22	78.3	0.4	1.5	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|529076807|ref|YP_008375810.1|	-	2.2e-21	77.0	8.3	2.2e-21	77.0	8.3	2.3	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glycos_transf_1	PF00534.20	gi|529076807|ref|YP_008375810.1|	-	1.4e-13	50.7	0.0	2e-13	50.2	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|529076807|ref|YP_008375810.1|	-	7.8e-11	42.5	0.0	1.8e-10	41.4	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|529076807|ref|YP_008375810.1|	-	2.3e-05	24.4	0.0	5.6e-05	23.2	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	transferase	4-like
Regnase_1_C	PF18561.1	gi|529076807|ref|YP_008375810.1|	-	0.084	12.6	0.0	0.21	11.3	0.0	1.6	1	0	0	1	1	1	0	Endoribonuclease	Regnase	1/	ZC3H12	C-terminal	domain
Fe-ADH_2	PF13685.6	gi|529076808|ref|YP_008375811.1|	-	5.8e-63	212.9	2.2	7.6e-63	212.5	2.2	1.2	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH	PF00465.19	gi|529076808|ref|YP_008375811.1|	-	9.9e-22	77.2	7.7	5.3e-21	74.8	7.7	1.8	1	1	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
DHQ_synthase	PF01761.20	gi|529076808|ref|YP_008375811.1|	-	1.4e-11	44.1	0.6	3.7e-11	42.7	0.6	1.6	1	1	0	1	1	1	1	3-dehydroquinate	synthase
AP_endonuc_2	PF01261.24	gi|529076808|ref|YP_008375811.1|	-	0.0083	15.6	0.7	0.075	12.5	0.7	2.1	1	1	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
MatE	PF01554.18	gi|529076809|ref|YP_008375812.1|	-	1e-31	109.7	31.0	1.5e-18	67.0	8.9	2.7	2	1	0	2	2	2	2	MatE
Polysacc_synt_C	PF14667.6	gi|529076809|ref|YP_008375812.1|	-	1.4e-05	25.2	21.0	0.00016	21.7	5.0	4.1	4	1	0	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
Epimerase	PF01370.21	gi|529076810|ref|YP_008375813.1|	-	2.3e-33	115.7	0.3	6.1e-19	68.4	0.0	2.1	1	1	1	2	2	2	2	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|529076810|ref|YP_008375813.1|	-	2.5e-11	43.6	0.2	0.00013	21.5	0.1	2.1	1	1	1	2	2	2	2	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|529076810|ref|YP_008375813.1|	-	9.1e-10	38.0	0.0	2.5e-07	30.0	0.0	2.1	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|529076810|ref|YP_008375813.1|	-	1e-08	34.6	0.3	0.0017	17.5	0.0	2.1	2	0	0	2	2	2	2	RmlD	substrate	binding	domain
NAD_binding_10	PF13460.6	gi|529076810|ref|YP_008375813.1|	-	4.5e-08	33.2	0.1	8.8e-08	32.3	0.1	1.5	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|529076810|ref|YP_008375813.1|	-	1.7e-06	27.4	0.0	0.00074	18.8	0.0	2.1	2	0	0	2	2	2	2	Male	sterility	protein
adh_short	PF00106.25	gi|529076810|ref|YP_008375813.1|	-	0.013	15.0	0.0	0.024	14.1	0.0	1.5	1	0	0	1	1	1	0	short	chain	dehydrogenase
NmrA	PF05368.13	gi|529076810|ref|YP_008375813.1|	-	0.051	13.1	0.0	0.081	12.5	0.0	1.3	1	0	0	1	1	1	0	NmrA-like	family
DUF296	PF03479.15	gi|529076811|ref|YP_008375814.1|	-	4.1e-18	65.7	0.0	5.1e-18	65.4	0.0	1.1	1	0	0	1	1	1	1	Plants	and	Prokaryotes	Conserved	(PCC)	domain
RraA-like	PF03737.15	gi|529076813|ref|YP_008375816.1|	-	2.3e-22	79.8	0.0	3.2e-22	79.3	0.0	1.2	1	0	0	1	1	1	1	Aldolase/RraA
Pyr_redox_2	PF07992.14	gi|529076814|ref|YP_008375817.1|	-	5e-33	114.6	0.6	1.4e-32	113.1	0.6	1.7	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Fer4_20	PF14691.6	gi|529076814|ref|YP_008375817.1|	-	5.1e-22	77.8	0.0	7.8e-22	77.2	0.0	1.3	1	0	0	1	1	1	1	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
NAD_binding_8	PF13450.6	gi|529076814|ref|YP_008375817.1|	-	1.8e-11	44.1	0.1	4.3e-10	39.7	0.0	2.8	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.27	gi|529076814|ref|YP_008375817.1|	-	2e-11	44.3	0.3	2.8e-07	31.0	0.1	2.9	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|529076814|ref|YP_008375817.1|	-	1.3e-09	37.7	0.0	0.00023	20.5	0.0	3.3	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Amino_oxidase	PF01593.24	gi|529076814|ref|YP_008375817.1|	-	2.1e-08	33.9	0.8	2.2e-07	30.6	0.1	2.3	2	1	0	2	2	2	1	Flavin	containing	amine	oxidoreductase
FAD_oxidored	PF12831.7	gi|529076814|ref|YP_008375817.1|	-	2.4e-07	30.5	2.4	1.1e-06	28.3	0.0	2.1	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|529076814|ref|YP_008375817.1|	-	2.6e-07	29.7	0.2	6.7e-06	25.1	0.0	2.1	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|529076814|ref|YP_008375817.1|	-	4.1e-07	29.6	0.2	1.3e-06	28.0	0.0	2.0	2	1	0	2	2	2	1	FAD	binding	domain
Thi4	PF01946.17	gi|529076814|ref|YP_008375817.1|	-	2.6e-06	26.9	0.2	6.9e-06	25.5	0.0	1.7	2	0	0	2	2	2	1	Thi4	family
DAO	PF01266.24	gi|529076814|ref|YP_008375817.1|	-	7.1e-06	25.8	2.5	1.4e-05	24.9	0.2	2.3	1	1	1	2	2	2	1	FAD	dependent	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|529076814|ref|YP_008375817.1|	-	7.8e-06	25.3	0.3	0.012	14.9	0.0	2.3	2	0	0	2	2	2	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
FAD_binding_2	PF00890.24	gi|529076814|ref|YP_008375817.1|	-	1.1e-05	24.8	3.5	2.4e-05	23.6	0.1	2.6	3	0	0	3	3	3	1	FAD	binding	domain
NAD_binding_7	PF13241.6	gi|529076814|ref|YP_008375817.1|	-	2.1e-05	24.9	0.0	0.11	12.9	0.0	2.4	2	0	0	2	2	2	2	Putative	NAD(P)-binding
GIDA	PF01134.22	gi|529076814|ref|YP_008375817.1|	-	0.00019	20.7	0.3	0.0064	15.6	0.0	2.1	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
FMO-like	PF00743.19	gi|529076814|ref|YP_008375817.1|	-	0.00028	19.4	0.0	0.015	13.7	0.0	2.1	2	0	0	2	2	2	1	Flavin-binding	monooxygenase-like
K_oxygenase	PF13434.6	gi|529076814|ref|YP_008375817.1|	-	0.00051	19.3	0.0	0.12	11.5	0.0	2.3	2	0	0	2	2	2	1	L-lysine	6-monooxygenase	(NADPH-requiring)
NAD_binding_9	PF13454.6	gi|529076814|ref|YP_008375817.1|	-	0.0013	18.7	0.0	0.012	15.6	0.0	2.4	2	0	0	2	2	2	1	FAD-NAD(P)-binding
TrkA_N	PF02254.18	gi|529076814|ref|YP_008375817.1|	-	0.0024	18.1	0.1	0.069	13.4	0.0	2.4	2	0	0	2	2	2	1	TrkA-N	domain
Lycopene_cycl	PF05834.12	gi|529076814|ref|YP_008375817.1|	-	0.0031	16.6	0.0	0.0097	15.0	0.0	1.7	2	0	0	2	2	2	1	Lycopene	cyclase	protein
YjeF_N	PF03853.15	gi|529076814|ref|YP_008375817.1|	-	0.0041	17.0	0.1	1.6	8.6	0.0	2.3	2	0	0	2	2	2	1	YjeF-related	protein	N-terminus
2-Hacid_dh_C	PF02826.19	gi|529076814|ref|YP_008375817.1|	-	0.01	15.2	0.0	0.73	9.2	0.0	2.3	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|529076814|ref|YP_008375817.1|	-	0.012	15.5	1.3	0.017	15.0	0.0	1.9	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Shikimate_DH	PF01488.20	gi|529076814|ref|YP_008375817.1|	-	0.021	14.9	0.0	1.7	8.7	0.0	2.3	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
Trp_halogenase	PF04820.14	gi|529076814|ref|YP_008375817.1|	-	0.025	13.4	0.1	0.3	9.9	0.1	2.1	2	0	0	2	2	2	0	Tryptophan	halogenase
AdoHcyase_NAD	PF00670.21	gi|529076814|ref|YP_008375817.1|	-	0.026	14.6	0.5	0.28	11.2	0.1	2.2	2	0	0	2	2	2	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|529076814|ref|YP_008375817.1|	-	0.074	13.6	0.6	0.69	10.5	0.0	2.6	3	0	0	3	3	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
ApbA	PF02558.16	gi|529076814|ref|YP_008375817.1|	-	0.077	12.6	0.1	0.19	11.4	0.1	1.7	1	1	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
DJ-1_PfpI	PF01965.24	gi|529076814|ref|YP_008375817.1|	-	0.11	12.2	0.5	1.1	9.0	0.1	2.5	3	0	0	3	3	3	0	DJ-1/PfpI	family
Rossmann-like	PF10727.9	gi|529076814|ref|YP_008375817.1|	-	0.12	12.2	0.0	0.26	11.2	0.0	1.5	1	0	0	1	1	1	0	Rossmann-like	domain
NAD_binding_2	PF03446.15	gi|529076814|ref|YP_008375817.1|	-	0.12	12.5	0.0	0.21	11.7	0.0	1.4	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_Gly3P_dh_N	PF01210.23	gi|529076814|ref|YP_008375817.1|	-	0.15	12.0	0.0	0.31	11.0	0.0	1.5	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
UDPG_MGDP_dh_N	PF03721.14	gi|529076814|ref|YP_008375817.1|	-	0.16	11.5	0.0	0.97	9.0	0.0	2.2	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Fer4_9	PF13187.6	gi|529076814|ref|YP_008375817.1|	-	0.46	10.7	4.5	0.73	10.1	1.0	1.9	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|529076814|ref|YP_008375817.1|	-	6.8	7.5	7.0	1.7	9.4	0.7	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
GATase_2	PF00310.21	gi|529076815|ref|YP_008375818.1|	-	1.1e-160	535.0	0.0	1.4e-160	534.6	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
Glu_synthase	PF01645.17	gi|529076815|ref|YP_008375818.1|	-	6.3e-148	492.8	0.1	6.8e-147	489.4	0.0	2.1	2	0	0	2	2	2	1	Conserved	region	in	glutamate	synthase
Glu_syn_central	PF04898.14	gi|529076815|ref|YP_008375818.1|	-	1.7e-116	388.6	0.0	1.6e-114	382.1	0.0	2.6	3	0	0	3	3	3	1	Glutamate	synthase	central	domain
GXGXG	PF01493.19	gi|529076815|ref|YP_008375818.1|	-	1.4e-78	262.9	7.6	2.4e-78	262.1	7.6	1.3	1	0	0	1	1	1	1	GXGXG	motif
FMN_dh	PF01070.18	gi|529076815|ref|YP_008375818.1|	-	0.00085	18.4	5.5	0.00089	18.4	2.1	2.4	3	0	0	3	3	3	1	FMN-dependent	dehydrogenase
Acetyltransf_10	PF13673.7	gi|529076816|ref|YP_008375819.1|	-	5.2e-11	42.6	0.0	5.6e-11	42.5	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|529076816|ref|YP_008375819.1|	-	3.9e-08	33.6	0.0	4.6e-08	33.3	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|529076816|ref|YP_008375819.1|	-	1.4e-06	28.6	0.0	1.9e-06	28.2	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|529076816|ref|YP_008375819.1|	-	0.01	15.8	0.0	0.017	15.1	0.0	1.3	1	0	0	1	1	1	0	FR47-like	protein
Gluconate_2-dh3	PF13618.6	gi|529076816|ref|YP_008375819.1|	-	0.048	13.9	0.0	0.068	13.4	0.0	1.3	1	0	0	1	1	1	0	Gluconate	2-dehydrogenase	subunit	3
Mem_trans	PF03547.18	gi|529076817|ref|YP_008375820.1|	-	1.2e-19	70.0	16.1	4.4e-14	51.7	9.3	2.0	2	0	0	2	2	2	2	Membrane	transport	protein
SBF	PF01758.16	gi|529076817|ref|YP_008375820.1|	-	0.00027	20.7	6.3	0.00027	20.7	6.3	2.4	2	1	0	2	2	2	1	Sodium	Bile	acid	symporter	family
GRASP55_65	PF04495.14	gi|529076817|ref|YP_008375820.1|	-	0.13	12.6	1.1	2.2	8.6	0.1	2.8	3	0	0	3	3	3	0	GRASP55/65	PDZ-like	domain
DUF2781	PF10914.8	gi|529076817|ref|YP_008375820.1|	-	2	8.8	7.0	1.1	9.7	2.8	2.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2781)
Flavoprotein	PF02441.19	gi|529076818|ref|YP_008375821.1|	-	2.5e-22	79.3	0.0	3e-22	79.1	0.0	1.1	1	0	0	1	1	1	1	Flavoprotein
DUF3618	PF12277.8	gi|529076818|ref|YP_008375821.1|	-	0.0061	16.8	0.9	0.015	15.5	0.9	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3618)
DUF126	PF01989.16	gi|529076819|ref|YP_008375822.1|	-	3.5e-34	116.5	0.0	5.2e-34	115.9	0.0	1.3	1	0	0	1	1	1	1	Aconitase	X	swivel	domain
DUF521	PF04412.13	gi|529076820|ref|YP_008375823.1|	-	2.7e-148	494.0	0.0	3e-148	493.8	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF521)
Transcrip_reg	PF01709.20	gi|529076820|ref|YP_008375823.1|	-	0.16	11.4	0.1	0.42	10.0	0.1	1.6	2	0	0	2	2	2	0	Transcriptional	regulator
UbiD	PF01977.16	gi|529076821|ref|YP_008375824.1|	-	3e-84	283.3	5.0	3.6e-84	283.0	5.0	1.0	1	0	0	1	1	1	1	3-octaprenyl-4-hydroxybenzoate	carboxy-lyase
tRNA-synt_2c	PF01411.19	gi|529076822|ref|YP_008375825.1|	-	3.1e-14	52.4	0.2	4.3e-14	51.9	0.2	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
tRNA_SAD	PF07973.14	gi|529076822|ref|YP_008375825.1|	-	1e-12	48.0	0.4	1.8e-12	47.2	0.4	1.4	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
HR1	PF02185.16	gi|529076822|ref|YP_008375825.1|	-	0.082	13.0	0.0	0.16	12.1	0.0	1.5	1	0	0	1	1	1	0	Hr1	repeat
Methyltransf_11	PF08241.12	gi|529076823|ref|YP_008375826.1|	-	1.8e-08	34.9	0.1	2.6e-07	31.2	0.1	2.2	1	1	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|529076823|ref|YP_008375826.1|	-	4e-07	29.7	0.0	3.1e-06	26.8	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	small	domain
Methyltransf_25	PF13649.6	gi|529076823|ref|YP_008375826.1|	-	5.8e-07	30.1	0.0	1.1e-05	26.0	0.0	2.3	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|529076823|ref|YP_008375826.1|	-	2.9e-06	27.2	0.0	1.1e-05	25.3	0.0	1.7	1	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|529076823|ref|YP_008375826.1|	-	8.4e-05	22.4	0.0	0.00019	21.3	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.13	gi|529076823|ref|YP_008375826.1|	-	0.00012	21.6	0.3	0.00017	21.1	0.3	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_12	PF08242.12	gi|529076823|ref|YP_008375826.1|	-	0.00013	22.6	0.1	0.001	19.7	0.0	2.1	2	0	0	2	2	2	1	Methyltransferase	domain
PCMT	PF01135.19	gi|529076823|ref|YP_008375826.1|	-	0.00035	20.4	0.0	0.0006	19.6	0.0	1.4	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
TrkA_N	PF02254.18	gi|529076823|ref|YP_008375826.1|	-	0.0017	18.6	0.1	0.096	13.0	0.0	2.1	2	0	0	2	2	2	1	TrkA-N	domain
Methyltransf_18	PF12847.7	gi|529076823|ref|YP_008375826.1|	-	0.003	17.5	0.0	0.0067	16.4	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	domain
CMAS	PF02353.20	gi|529076823|ref|YP_008375826.1|	-	0.0038	16.5	0.0	0.037	13.3	0.0	1.9	2	0	0	2	2	2	1	Mycolic	acid	cyclopropane	synthetase
MetW	PF07021.12	gi|529076823|ref|YP_008375826.1|	-	0.0086	15.7	0.0	0.014	15.0	0.0	1.3	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Met_10	PF02475.16	gi|529076823|ref|YP_008375826.1|	-	0.015	15.0	0.0	0.021	14.6	0.0	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
TPMT	PF05724.11	gi|529076823|ref|YP_008375826.1|	-	0.024	14.3	0.0	0.058	13.1	0.0	1.6	2	0	0	2	2	2	0	Thiopurine	S-methyltransferase	(TPMT)
UPF0146	PF03686.13	gi|529076823|ref|YP_008375826.1|	-	0.026	14.4	0.0	0.04	13.8	0.0	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0146)
Methyltransf_32	PF13679.6	gi|529076823|ref|YP_008375826.1|	-	0.041	13.9	0.0	0.059	13.4	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
TehB	PF03848.14	gi|529076823|ref|YP_008375826.1|	-	0.059	12.8	0.0	0.08	12.4	0.0	1.1	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
UDPG_MGDP_dh_N	PF03721.14	gi|529076823|ref|YP_008375826.1|	-	0.089	12.4	0.0	0.13	11.8	0.0	1.2	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
FtsJ	PF01728.19	gi|529076823|ref|YP_008375826.1|	-	0.12	12.5	0.0	0.14	12.2	0.0	1.1	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
Ubie_methyltran	PF01209.18	gi|529076823|ref|YP_008375826.1|	-	0.26	10.6	0.0	0.99	8.7	0.0	1.8	1	1	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
RrnaAD	PF00398.20	gi|529076824|ref|YP_008375827.1|	-	5.7e-47	160.0	0.0	6.7e-47	159.8	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_25	PF13649.6	gi|529076824|ref|YP_008375827.1|	-	5.1e-05	23.9	0.0	0.00012	22.7	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|529076824|ref|YP_008375827.1|	-	0.00065	20.3	0.0	0.0013	19.3	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
NodS	PF05401.11	gi|529076824|ref|YP_008375827.1|	-	0.012	15.2	0.0	0.022	14.4	0.0	1.3	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
Methyltransf_12	PF08242.12	gi|529076824|ref|YP_008375827.1|	-	0.041	14.6	0.1	0.15	12.8	0.0	1.9	2	0	0	2	2	2	0	Methyltransferase	domain
DUF655	PF04919.12	gi|529076825|ref|YP_008375828.1|	-	3.6e-61	206.2	0.0	4.2e-61	206.0	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF655)
HHH_6	PF14579.6	gi|529076825|ref|YP_008375828.1|	-	0.00075	19.7	0.1	0.0021	18.2	0.0	1.9	1	1	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_3	PF12836.7	gi|529076825|ref|YP_008375828.1|	-	0.0013	18.9	0.0	0.0028	17.9	0.0	1.5	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
RNA_pol_Rpb4	PF03874.16	gi|529076826|ref|YP_008375829.1|	-	1.7e-11	44.5	2.1	2.2e-11	44.2	2.1	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb4
Ribosomal_L21e	PF01157.18	gi|529076827|ref|YP_008375830.1|	-	1.1e-30	105.5	0.0	1.2e-30	105.4	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L21e
EF1_GNE	PF00736.19	gi|529076828|ref|YP_008375831.1|	-	1.6e-17	63.4	0.1	1.8e-17	63.3	0.1	1.0	1	0	0	1	1	1	1	EF-1	guanine	nucleotide	exchange	domain
DUF1610	PF07754.11	gi|529076829|ref|YP_008375832.1|	-	2.7e-06	27.2	16.9	4.8e-06	26.4	5.2	2.9	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF1610)
C1_2	PF03107.16	gi|529076829|ref|YP_008375832.1|	-	0.00015	22.0	10.9	0.047	14.0	1.1	2.1	1	1	1	2	2	2	2	C1	domain
Zn_Tnp_IS91	PF14319.6	gi|529076829|ref|YP_008375832.1|	-	0.0011	19.0	10.8	0.0016	18.5	10.8	1.3	1	1	0	1	1	1	1	Transposase	zinc-binding	domain
Rhodanese_C	PF12368.8	gi|529076829|ref|YP_008375832.1|	-	0.0013	19.0	10.0	0.0015	18.9	10.0	1.1	1	0	0	1	1	1	1	Rhodanase	C-terminal
OrfB_Zn_ribbon	PF07282.11	gi|529076829|ref|YP_008375832.1|	-	0.0014	18.5	11.8	0.012	15.5	6.5	2.2	1	1	1	2	2	2	1	Putative	transposase	DNA-binding	domain
zf-ACC	PF17848.1	gi|529076829|ref|YP_008375832.1|	-	0.0022	18.0	14.2	0.019	15.1	0.4	3.9	3	1	0	3	3	3	1	Acetyl-coA	carboxylase	zinc	finger	domain
zf-Mss51	PF13824.6	gi|529076829|ref|YP_008375832.1|	-	0.0051	16.9	14.0	0.44	10.7	3.1	2.9	1	1	1	2	2	2	1	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DNA_RNApol_7kD	PF03604.13	gi|529076829|ref|YP_008375832.1|	-	0.0052	16.4	11.6	0.014	15.1	1.3	3.0	1	1	1	2	2	2	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-ribbon_3	PF13248.6	gi|529076829|ref|YP_008375832.1|	-	0.0053	16.1	14.8	0.44	10.0	0.2	4.1	4	0	0	4	4	4	2	zinc-ribbon	domain
zf-CHY	PF05495.12	gi|529076829|ref|YP_008375832.1|	-	0.013	16.0	12.8	0.27	11.7	2.5	2.1	1	1	1	2	2	2	0	CHY	zinc	finger
zf-H2C2_2	PF13465.6	gi|529076829|ref|YP_008375832.1|	-	0.016	15.6	15.9	1.1	9.8	0.6	4.0	2	1	2	4	4	4	0	Zinc-finger	double	domain
C1_1	PF00130.22	gi|529076829|ref|YP_008375832.1|	-	0.02	14.8	1.8	0.02	14.8	1.8	2.6	1	1	1	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
PhnA_Zn_Ribbon	PF08274.12	gi|529076829|ref|YP_008375832.1|	-	0.021	14.7	13.9	0.17	11.8	2.3	3.6	1	1	2	3	3	3	0	PhnA	Zinc-Ribbon
zinc_ribbon_10	PF10058.9	gi|529076829|ref|YP_008375832.1|	-	0.036	13.8	12.4	2.5	7.9	0.1	3.9	2	1	2	4	4	4	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
HypA	PF01155.19	gi|529076829|ref|YP_008375832.1|	-	0.047	13.7	12.9	0.066	13.2	1.7	2.1	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Prok-RING_1	PF14446.6	gi|529076829|ref|YP_008375832.1|	-	0.054	13.4	12.5	0.14	12.1	2.0	2.5	1	1	1	2	2	2	0	Prokaryotic	RING	finger	family	1
zf-C2H2	PF00096.26	gi|529076829|ref|YP_008375832.1|	-	0.062	13.8	12.7	4.8	7.8	0.6	3.4	3	0	0	3	3	3	0	Zinc	finger,	C2H2	type
HscB_4_cys	PF18256.1	gi|529076829|ref|YP_008375832.1|	-	0.071	12.9	1.1	0.071	12.9	1.1	3.1	2	1	1	3	3	3	0	Co-chaperone	HscB	tetracysteine	metal	binding	motif
zf-C2H2_11	PF16622.5	gi|529076829|ref|YP_008375832.1|	-	0.12	12.1	13.0	1.9	8.3	0.3	3.6	4	0	0	4	4	4	0	zinc-finger	C2H2-type
zinc_ribbon_2	PF13240.6	gi|529076829|ref|YP_008375832.1|	-	0.16	11.7	18.9	0.32	10.8	0.3	3.9	2	2	0	3	3	3	0	zinc-ribbon	domain
UPF0547	PF10571.9	gi|529076829|ref|YP_008375832.1|	-	0.17	12.0	0.6	0.17	12.0	0.6	3.9	3	1	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
NMDAR2_C	PF10565.9	gi|529076829|ref|YP_008375832.1|	-	0.18	10.6	7.8	0.2	10.5	7.8	1.0	1	0	0	1	1	1	0	N-methyl	D-aspartate	receptor	2B3	C-terminus
NMD3	PF04981.13	gi|529076829|ref|YP_008375832.1|	-	0.22	11.0	9.5	0.26	10.7	9.5	1.0	1	0	0	1	1	1	0	NMD3	family
PolC_DP2	PF03833.13	gi|529076829|ref|YP_008375832.1|	-	0.27	9.1	8.4	0.3	8.9	8.4	1.0	1	0	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
zf-UBR	PF02207.20	gi|529076829|ref|YP_008375832.1|	-	0.27	11.4	12.6	20	5.5	12.6	2.5	1	1	0	1	1	1	0	Putative	zinc	finger	in	N-recognin	(UBR	box)
Zn-ribbon_8	PF09723.10	gi|529076829|ref|YP_008375832.1|	-	0.28	11.4	18.8	5.8	7.1	13.4	3.7	1	1	2	3	3	3	0	Zinc	ribbon	domain
zf-UBP	PF02148.19	gi|529076829|ref|YP_008375832.1|	-	0.28	11.6	1.0	0.28	11.6	1.0	2.6	2	1	0	2	2	2	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
zf-MYND	PF01753.18	gi|529076829|ref|YP_008375832.1|	-	0.28	11.3	10.0	3.8	7.7	2.3	2.5	1	1	1	2	2	2	0	MYND	finger
FYVE_2	PF02318.16	gi|529076829|ref|YP_008375832.1|	-	0.39	10.9	7.9	0.44	10.8	7.9	1.0	1	0	0	1	1	1	0	FYVE-type	zinc	finger
Rubredoxin_2	PF18073.1	gi|529076829|ref|YP_008375832.1|	-	0.62	9.8	0.3	0.62	9.8	0.3	3.9	4	0	0	4	4	4	0	Rubredoxin	metal	binding	domain
A2L_zn_ribbon	PF08792.10	gi|529076829|ref|YP_008375832.1|	-	0.67	9.7	15.5	44	3.9	10.5	3.3	1	1	1	2	2	2	0	A2L	zinc	ribbon	domain
zinc_ribbon_4	PF13717.6	gi|529076829|ref|YP_008375832.1|	-	0.67	9.9	0.1	0.67	9.9	0.1	4.0	1	1	3	4	4	4	0	zinc-ribbon	domain
Zn_ribbon_17	PF17120.5	gi|529076829|ref|YP_008375832.1|	-	0.71	9.5	9.5	8.1	6.2	9.5	2.1	1	1	0	1	1	1	0	Zinc-ribbon,	C4HC2	type
zf_UBZ	PF18439.1	gi|529076829|ref|YP_008375832.1|	-	0.72	9.5	17.1	0.75	9.4	0.4	3.7	2	1	2	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
zf-HIT	PF04438.16	gi|529076829|ref|YP_008375832.1|	-	0.91	9.4	19.0	3.1	7.7	1.7	3.7	1	1	2	3	3	3	0	HIT	zinc	finger
Zn_ribbon_SprT	PF17283.2	gi|529076829|ref|YP_008375832.1|	-	1.4	8.9	18.6	2.8	7.9	0.3	4.0	3	1	0	3	3	3	0	SprT-like	zinc	ribbon	domain
zf-C3HC4_3	PF13920.6	gi|529076829|ref|YP_008375832.1|	-	1.4	8.8	15.2	14	5.6	0.2	2.7	2	1	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
TFIIS_C	PF01096.18	gi|529076829|ref|YP_008375832.1|	-	1.8	8.5	17.7	4.1	7.3	0.6	4.1	2	1	2	4	4	4	0	Transcription	factor	S-II	(TFIIS)
NRDD	PF13597.6	gi|529076829|ref|YP_008375832.1|	-	2.6	6.7	12.4	1.5	7.5	3.8	2.0	1	1	1	2	2	2	0	Anaerobic	ribonucleoside-triphosphate	reductase
TF_Zn_Ribbon	PF08271.12	gi|529076829|ref|YP_008375832.1|	-	2.6	7.6	16.9	3	7.4	0.7	3.8	3	1	0	4	4	4	0	TFIIB	zinc-binding
Ribosomal_L37ae	PF01780.19	gi|529076829|ref|YP_008375832.1|	-	2.9	8.0	12.4	6.7	6.9	2.2	3.2	1	1	1	2	2	2	0	Ribosomal	L37ae	protein	family
DUF2752	PF10825.8	gi|529076829|ref|YP_008375832.1|	-	3.4	7.8	10.2	16	5.6	0.5	3.8	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF2752)
Zn_Tnp_IS1595	PF12760.7	gi|529076829|ref|YP_008375832.1|	-	3.4	7.7	18.5	1.6e+02	2.3	18.5	3.2	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
DUF35_N	PF12172.8	gi|529076829|ref|YP_008375832.1|	-	3.7	7.5	17.5	15	5.6	6.7	3.7	3	1	0	3	3	3	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-RING_7	PF02591.15	gi|529076829|ref|YP_008375832.1|	-	5.1	7.4	18.8	1.4	9.2	0.7	3.8	2	1	2	4	4	4	0	C4-type	zinc	ribbon	domain
zf-RING_5	PF14634.6	gi|529076829|ref|YP_008375832.1|	-	6.3	6.8	15.0	52	3.9	15.0	2.7	1	1	0	1	1	1	0	zinc-RING	finger	domain
DUF4379	PF14311.6	gi|529076829|ref|YP_008375832.1|	-	8	6.9	11.4	26	5.3	11.4	1.9	1	1	0	1	1	1	0	Probable	Zinc-ribbon	domain
DUF1451	PF07295.11	gi|529076829|ref|YP_008375832.1|	-	8.4	6.4	10.6	6.4	6.8	3.4	2.1	1	1	1	2	2	2	0	Zinc-ribbon	containing	domain
zf-C2H2_3	PF13878.6	gi|529076829|ref|YP_008375832.1|	-	8.7	6.3	16.5	1.9	8.4	0.1	3.7	1	1	3	4	4	4	0	zinc-finger	of	acetyl-transferase	ESCO
zinc_ribbon_9	PF14369.6	gi|529076829|ref|YP_008375832.1|	-	9.5	6.6	15.2	12	6.3	3.1	3.7	1	1	2	3	3	3	0	zinc-ribbon
Ogr_Delta	PF04606.12	gi|529076829|ref|YP_008375832.1|	-	9.7	6.3	13.6	12	6.0	0.3	3.8	4	0	0	4	4	4	0	Ogr/Delta-like	zinc	finger
Sgf11	PF08209.11	gi|529076829|ref|YP_008375832.1|	-	9.9	5.8	16.0	2.7	7.6	1.0	3.8	2	1	2	4	4	4	0	Sgf11	(transcriptional	regulation	protein)
RNA_pol_L_2	PF13656.6	gi|529076830|ref|YP_008375833.1|	-	6.8e-17	61.0	0.0	8.4e-17	60.7	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
RNA_pol_L	PF01193.24	gi|529076830|ref|YP_008375833.1|	-	9.5e-07	28.2	0.0	1.7e-06	27.4	0.0	1.4	1	1	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
zinc_ribbon_13	PF09855.9	gi|529076831|ref|YP_008375834.1|	-	1.2e-27	95.8	0.8	1.3e-27	95.7	0.8	1.0	1	0	0	1	1	1	1	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
Lar_restr_allev	PF14354.6	gi|529076831|ref|YP_008375834.1|	-	0.00086	19.6	0.5	0.0013	19.0	0.5	1.3	1	1	0	1	1	1	1	Restriction	alleviation	protein	Lar
zf-ribbon_3	PF13248.6	gi|529076831|ref|YP_008375834.1|	-	0.0018	17.6	1.5	0.64	9.5	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|529076831|ref|YP_008375834.1|	-	0.0026	17.7	1.6	0.98	9.4	0.2	2.1	1	1	0	2	2	2	2	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|529076831|ref|YP_008375834.1|	-	0.0043	16.7	3.7	0.61	9.9	0.4	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
Zn_Tnp_IS91	PF14319.6	gi|529076831|ref|YP_008375834.1|	-	0.011	15.8	0.1	1.2	9.2	0.0	2.1	2	0	0	2	2	2	0	Transposase	zinc-binding	domain
CpXC	PF14353.6	gi|529076831|ref|YP_008375834.1|	-	0.016	15.3	0.4	0.025	14.6	0.4	1.3	1	1	0	1	1	1	0	CpXC	protein
TFIIS_C	PF01096.18	gi|529076831|ref|YP_008375834.1|	-	0.018	14.9	2.7	1.6	8.6	0.3	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
TF_Zn_Ribbon	PF08271.12	gi|529076831|ref|YP_008375834.1|	-	0.019	14.5	3.9	0.36	10.4	4.0	2.2	1	1	0	1	1	1	0	TFIIB	zinc-binding
Elf1	PF05129.13	gi|529076831|ref|YP_008375834.1|	-	0.02	14.9	0.6	0.053	13.6	0.6	1.6	1	1	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
Zn-ribbon_8	PF09723.10	gi|529076831|ref|YP_008375834.1|	-	0.033	14.3	0.8	1.8	8.8	0.3	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
DNA_RNApol_7kD	PF03604.13	gi|529076831|ref|YP_008375834.1|	-	0.038	13.7	1.5	0.77	9.5	0.0	2.1	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
DUF2387	PF09526.10	gi|529076831|ref|YP_008375834.1|	-	0.045	13.9	1.4	0.38	10.9	1.2	2.0	1	1	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
A2L_zn_ribbon	PF08792.10	gi|529076831|ref|YP_008375834.1|	-	0.069	12.9	1.5	7.7	6.4	0.2	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Spt4	PF06093.13	gi|529076831|ref|YP_008375834.1|	-	0.1	12.7	1.3	2	8.6	0.1	2.0	1	1	1	2	2	2	0	Spt4/RpoE2	zinc	finger
zinc_ribbon_4	PF13717.6	gi|529076831|ref|YP_008375834.1|	-	0.11	12.4	0.9	11	6.0	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|529076831|ref|YP_008375834.1|	-	0.11	12.4	2.3	1.4	8.9	2.3	2.0	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-IS66	PF13005.7	gi|529076831|ref|YP_008375834.1|	-	0.12	12.7	3.6	0.19	12.2	0.2	2.2	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
UPF0547	PF10571.9	gi|529076831|ref|YP_008375834.1|	-	0.14	12.2	4.1	3.8	7.7	0.6	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-C2H2_3	PF13878.6	gi|529076831|ref|YP_008375834.1|	-	0.17	11.8	1.4	2.4	8.1	0.1	2.2	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
DUF2225	PF09986.9	gi|529076831|ref|YP_008375834.1|	-	0.27	10.9	1.2	0.48	10.1	1.2	1.5	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2225)
zf-HYPF	PF07503.12	gi|529076831|ref|YP_008375834.1|	-	0.36	10.6	3.0	2.2	8.1	0.1	2.3	2	0	0	2	2	2	0	HypF	finger
His_biosynth	PF00977.21	gi|529076832|ref|YP_008375835.1|	-	1.7e-81	273.0	0.2	1.9e-81	272.9	0.2	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Dus	PF01207.17	gi|529076832|ref|YP_008375835.1|	-	5.4e-09	35.6	0.0	2.5e-06	26.8	0.0	2.1	2	0	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
ThiG	PF05690.14	gi|529076832|ref|YP_008375835.1|	-	3.1e-07	29.9	0.1	0.00053	19.4	0.0	2.1	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
NMO	PF03060.15	gi|529076832|ref|YP_008375835.1|	-	1.4e-06	28.0	0.7	0.00023	20.7	0.1	2.2	2	0	0	2	2	2	2	Nitronate	monooxygenase
DHO_dh	PF01180.21	gi|529076832|ref|YP_008375835.1|	-	0.00032	20.0	0.1	0.0079	15.4	0.0	2.1	2	0	0	2	2	2	1	Dihydroorotate	dehydrogenase
G3P_antiterm	PF04309.12	gi|529076832|ref|YP_008375835.1|	-	0.00037	19.9	0.0	0.001	18.5	0.0	1.7	2	0	0	2	2	2	1	Glycerol-3-phosphate	responsive	antiterminator
IMPDH	PF00478.25	gi|529076832|ref|YP_008375835.1|	-	0.0032	16.5	0.1	0.0084	15.1	0.0	1.6	2	0	0	2	2	2	1	IMP	dehydrogenase	/	GMP	reductase	domain
PcrB	PF01884.17	gi|529076832|ref|YP_008375835.1|	-	0.0043	16.5	0.1	0.0068	15.9	0.1	1.3	1	0	0	1	1	1	1	PcrB	family
TMP-TENI	PF02581.17	gi|529076832|ref|YP_008375835.1|	-	0.025	13.9	0.2	0.14	11.5	0.0	2.0	2	0	0	2	2	2	0	Thiamine	monophosphate	synthase
Glu_synthase	PF01645.17	gi|529076832|ref|YP_008375835.1|	-	0.15	11.1	0.0	0.23	10.6	0.0	1.2	1	0	0	1	1	1	0	Conserved	region	in	glutamate	synthase
HicA_toxin	PF07927.12	gi|529076833|ref|YP_008375836.1|	-	3.8e-06	26.8	0.0	4.5e-06	26.6	0.0	1.1	1	0	0	1	1	1	1	HicA	toxin	of	bacterial	toxin-antitoxin,
Trypan_PARP	PF05887.11	gi|529076835|ref|YP_008375838.1|	-	0.0018	18.3	0.2	0.002	18.1	0.2	1.1	1	0	0	1	1	1	1	Procyclic	acidic	repetitive	protein	(PARP)
AIRS	PF00586.24	gi|529076836|ref|YP_008375839.1|	-	5.3e-42	142.4	7.2	5.5e-24	84.6	0.1	3.4	4	1	0	4	4	4	2	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.22	gi|529076836|ref|YP_008375839.1|	-	2.5e-39	134.9	9.5	8.8e-32	110.4	1.1	2.8	3	0	0	3	3	3	2	AIR	synthase	related	protein,	C-terminal	domain
FGAR-AT_linker	PF18072.1	gi|529076836|ref|YP_008375839.1|	-	8.5e-08	32.6	0.1	2.3e-07	31.2	0.1	1.8	1	0	0	1	1	1	1	Formylglycinamide	ribonucleotide	amidotransferase	linker	domain
CitMHS	PF03600.16	gi|529076837|ref|YP_008375840.1|	-	3.7e-60	203.7	20.4	2.2e-59	201.1	8.4	1.9	1	1	1	2	2	2	2	Citrate	transporter
TrkA_C	PF02080.21	gi|529076837|ref|YP_008375840.1|	-	1.8e-20	72.6	4.9	1.9e-09	37.2	0.1	3.0	3	0	0	3	3	3	2	TrkA-C	domain
Na_sulph_symp	PF00939.19	gi|529076837|ref|YP_008375840.1|	-	2.1e-16	60.1	34.8	2.5e-10	40.0	17.4	3.2	3	0	0	3	3	3	3	Sodium:sulfate	symporter	transmembrane	region
DctM	PF06808.12	gi|529076837|ref|YP_008375840.1|	-	2.4e-06	26.7	18.3	2.4e-06	26.7	18.3	2.4	2	0	0	2	2	2	1	Tripartite	ATP-independent	periplasmic	transporter,	DctM	component
Metallophos_2	PF12850.7	gi|529076838|ref|YP_008375841.1|	-	9.2e-13	48.7	0.1	1.2e-06	28.8	0.0	2.2	2	0	0	2	2	2	2	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|529076838|ref|YP_008375841.1|	-	1.4e-07	32.3	0.1	2.8e-06	28.0	0.1	2.1	2	0	0	2	2	2	1	Calcineurin-like	phosphoesterase
PBC	PF03792.13	gi|529076838|ref|YP_008375841.1|	-	0.16	11.7	0.0	0.26	11.0	0.0	1.2	1	0	0	1	1	1	0	PBC	domain
HMGL-like	PF00682.19	gi|529076839|ref|YP_008375842.1|	-	6.1e-81	271.8	6.1	1e-80	271.1	6.1	1.3	1	0	0	1	1	1	1	HMGL-like
AP_endonuc_2	PF01261.24	gi|529076839|ref|YP_008375842.1|	-	0.017	14.5	0.9	0.046	13.1	0.1	2.0	2	0	0	2	2	2	0	Xylose	isomerase-like	TIM	barrel
DUF4754	PF15946.5	gi|529076839|ref|YP_008375842.1|	-	0.051	13.8	0.3	1	9.7	0.0	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4754)
TPP_enzyme_C	PF02775.21	gi|529076841|ref|YP_008375844.1|	-	6.1e-51	172.2	0.3	2e-50	170.6	0.1	2.1	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_N	PF02776.18	gi|529076841|ref|YP_008375844.1|	-	5.2e-47	159.7	2.8	1.4e-46	158.3	0.5	2.6	3	0	0	3	3	3	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|529076841|ref|YP_008375844.1|	-	2.3e-46	156.9	0.0	4.3e-46	156.0	0.0	1.5	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
CO_dh	PF02552.16	gi|529076841|ref|YP_008375844.1|	-	0.088	12.6	0.0	0.16	11.7	0.0	1.3	1	0	0	1	1	1	0	CO	dehydrogenase	beta	subunit/acetyl-CoA	synthase	epsilon	subunit
ALS_ss_C	PF10369.9	gi|529076842|ref|YP_008375845.1|	-	3.4e-22	78.4	0.2	5.3e-22	77.8	0.2	1.3	1	0	0	1	1	1	1	Small	subunit	of	acetolactate	synthase
ACT	PF01842.25	gi|529076842|ref|YP_008375845.1|	-	2.8e-14	52.6	0.2	9.7e-14	50.8	0.0	1.9	2	0	0	2	2	2	1	ACT	domain
ACT_5	PF13710.6	gi|529076842|ref|YP_008375845.1|	-	1.6e-13	50.3	0.0	5.1e-13	48.7	0.0	1.8	2	0	0	2	2	2	1	ACT	domain
ACT_4	PF13291.6	gi|529076842|ref|YP_008375845.1|	-	0.0038	17.8	0.0	0.0083	16.7	0.0	1.5	1	0	0	1	1	1	1	ACT	domain
NIL	PF09383.10	gi|529076842|ref|YP_008375845.1|	-	0.016	15.0	0.4	5.1	7.0	0.1	2.5	2	1	0	2	2	2	0	NIL	domain
IlvN	PF07991.12	gi|529076843|ref|YP_008375846.1|	-	6.5e-67	224.2	0.0	8.5e-67	223.8	0.0	1.2	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
IlvC	PF01450.19	gi|529076843|ref|YP_008375846.1|	-	3.9e-62	208.8	2.0	5.2e-62	208.4	2.0	1.2	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
F420_oxidored	PF03807.17	gi|529076843|ref|YP_008375846.1|	-	1.5e-05	25.5	0.0	3.1e-05	24.4	0.0	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.19	gi|529076843|ref|YP_008375846.1|	-	3e-05	23.4	0.0	5.5e-05	22.6	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.15	gi|529076843|ref|YP_008375846.1|	-	0.0002	21.6	0.0	0.00047	20.4	0.0	1.6	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Mur_ligase	PF01225.25	gi|529076843|ref|YP_008375846.1|	-	0.0057	17.0	0.1	0.014	15.7	0.1	1.6	1	0	0	1	1	1	1	Mur	ligase	family,	catalytic	domain
Aconitase	PF00330.20	gi|529076844|ref|YP_008375847.1|	-	2.8e-147	491.5	0.0	3.1e-147	491.3	0.0	1.0	1	0	0	1	1	1	1	Aconitase	family	(aconitate	hydratase)
DUF521	PF04412.13	gi|529076844|ref|YP_008375847.1|	-	0.00069	18.4	0.0	0.0012	17.7	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF521)
Aconitase_C	PF00694.19	gi|529076845|ref|YP_008375848.1|	-	3.5e-19	69.4	0.0	4.7e-19	69.0	0.0	1.2	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
BRK	PF07533.16	gi|529076845|ref|YP_008375848.1|	-	0.16	11.6	0.0	1.9	8.2	0.0	2.2	2	0	0	2	2	2	0	BRK	domain
DUF1400	PF07176.11	gi|529076846|ref|YP_008375849.1|	-	0.034	14.4	0.3	0.15	12.3	0.2	2.0	1	1	0	1	1	1	0	Alpha/beta	hydrolase	of	unknown	function	(DUF1400)
HalX	PF08663.10	gi|529076846|ref|YP_008375849.1|	-	4.8	7.6	18.5	2.2	8.7	9.4	3.2	2	1	1	3	3	3	0	HalX	domain
Elong_Iki1	PF10483.9	gi|529076847|ref|YP_008375850.1|	-	0.024	14.1	0.0	0.031	13.8	0.0	1.1	1	0	0	1	1	1	0	Elongator	subunit	Iki1
Tnp_DNA_bind	PF14706.6	gi|529076850|ref|YP_008375853.1|	-	1.7e-25	88.6	0.0	3.2e-25	87.7	0.0	1.5	1	0	0	1	1	1	1	Transposase	DNA-binding
Dimer_Tnp_Tn5	PF02281.16	gi|529076850|ref|YP_008375853.1|	-	1.1e-07	31.5	0.1	2.7e-07	30.2	0.1	1.8	1	1	0	1	1	1	1	Transposase	Tn5	dimerisation	domain
DDE_Tnp_1	PF01609.21	gi|529076850|ref|YP_008375853.1|	-	1.2e-07	31.6	0.1	2.3e-07	30.7	0.1	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
OrfB_Zn_ribbon	PF07282.11	gi|529076851|ref|YP_008375854.1|	-	4e-23	81.1	0.7	6.9e-23	80.4	0.7	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|529076851|ref|YP_008375854.1|	-	7.9e-09	35.8	0.1	1.6e-08	34.8	0.1	1.5	1	0	0	1	1	1	1	Probable	transposase
TF_Zn_Ribbon	PF08271.12	gi|529076851|ref|YP_008375854.1|	-	0.0091	15.5	0.5	0.02	14.4	0.5	1.6	1	0	0	1	1	1	1	TFIIB	zinc-binding
Zn_Tnp_IS1595	PF12760.7	gi|529076851|ref|YP_008375854.1|	-	0.05	13.6	1.5	0.093	12.7	1.5	1.4	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Ribosomal_L37ae	PF01780.19	gi|529076851|ref|YP_008375854.1|	-	0.072	13.2	0.5	0.15	12.1	0.5	1.4	1	0	0	1	1	1	0	Ribosomal	L37ae	protein	family
DZR	PF12773.7	gi|529076851|ref|YP_008375854.1|	-	0.083	12.9	0.6	0.15	12.1	0.6	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|529076851|ref|YP_008375854.1|	-	0.19	11.5	2.4	6.4	6.6	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF4503	PF14951.6	gi|529076851|ref|YP_008375854.1|	-	0.36	9.2	0.8	0.56	8.6	0.8	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4503)
Lar_restr_allev	PF14354.6	gi|529076851|ref|YP_008375854.1|	-	0.74	10.2	3.9	0.38	11.2	1.1	2.0	2	0	0	2	2	2	0	Restriction	alleviation	protein	Lar
Rubredoxin_2	PF18073.1	gi|529076851|ref|YP_008375854.1|	-	2.4	7.9	7.7	8.5	6.2	0.6	2.4	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
F_bP_aldolase	PF01116.20	gi|529076852|ref|YP_008375855.1|	-	7.6e-74	248.7	0.0	8.6e-74	248.5	0.0	1.0	1	0	0	1	1	1	1	Fructose-bisphosphate	aldolase	class-II
PfkB	PF00294.24	gi|529076853|ref|YP_008375856.1|	-	1.3e-43	149.4	0.1	1.9e-43	148.9	0.1	1.1	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.12	gi|529076853|ref|YP_008375856.1|	-	0.0012	18.3	0.0	0.002	17.6	0.0	1.3	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
UBA	PF00627.31	gi|529076853|ref|YP_008375856.1|	-	0.044	13.7	0.1	2.5	8.1	0.0	2.6	2	0	0	2	2	2	0	UBA/TS-N	domain
DAGK_cat	PF00781.24	gi|529076853|ref|YP_008375856.1|	-	0.13	11.9	0.0	0.41	10.3	0.0	1.8	1	0	0	1	1	1	0	Diacylglycerol	kinase	catalytic	domain
Iso_dh	PF00180.20	gi|529076854|ref|YP_008375857.1|	-	1.4e-98	330.3	0.0	1.6e-98	330.1	0.0	1.0	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
OCC1	PF15506.6	gi|529076854|ref|YP_008375857.1|	-	0.14	12.3	0.0	0.39	10.9	0.0	1.7	1	0	0	1	1	1	0	OCC1	family
Lyase_1	PF00206.20	gi|529076855|ref|YP_008375858.1|	-	1.8e-51	175.4	0.0	2.3e-51	175.0	0.0	1.1	1	0	0	1	1	1	1	Lyase
ASL_C	PF08328.11	gi|529076855|ref|YP_008375858.1|	-	4.3e-41	139.6	0.0	7.8e-41	138.8	0.0	1.4	1	0	0	1	1	1	1	Adenylosuccinate	lyase	C-terminal
PKS_DE	PF18369.1	gi|529076855|ref|YP_008375858.1|	-	0.8	10.3	7.6	13	6.4	0.8	3.7	2	0	0	2	2	2	0	Polyketide	synthase	dimerisation	element	domain
Acyl-CoA_ox_N	PF14749.6	gi|529076856|ref|YP_008375859.1|	-	0.063	13.8	0.1	0.067	13.8	0.1	1.1	1	0	0	1	1	1	0	Acyl-coenzyme	A	oxidase	N-terminal
NAD_binding_1	PF00175.21	gi|529076857|ref|YP_008375860.1|	-	3.1e-15	56.8	0.0	1.2e-14	54.9	0.0	1.8	1	1	0	1	1	1	1	Oxidoreductase	NAD-binding	domain
FAD_binding_6	PF00970.24	gi|529076857|ref|YP_008375860.1|	-	5.1e-11	42.8	0.0	1.1e-10	41.8	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
RHH_1	PF01402.21	gi|529076859|ref|YP_008375862.1|	-	0.006	16.5	0.0	0.0089	15.9	0.0	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
SHOCT	PF09851.9	gi|529076859|ref|YP_008375862.1|	-	0.099	12.4	1.1	0.099	12.4	1.1	1.7	2	0	0	2	2	2	0	Short	C-terminal	domain
Lactamase_B_5	PF14597.6	gi|529076861|ref|YP_008375864.1|	-	0.05	13.1	0.0	0.089	12.3	0.0	1.5	1	1	0	1	1	1	0	Metallo-beta-lactamase	superfamily
Aldo_ket_red	PF00248.21	gi|529076863|ref|YP_008375866.1|	-	2.4e-47	161.6	0.0	2.2e-45	155.1	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
Methyltransf_25	PF13649.6	gi|529076864|ref|YP_008375867.1|	-	4.1e-12	46.7	0.1	7e-12	45.9	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|529076864|ref|YP_008375867.1|	-	7.2e-11	42.6	0.0	1.4e-10	41.6	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|529076864|ref|YP_008375867.1|	-	2.3e-08	33.9	0.0	3.3e-08	33.4	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_23	PF13489.6	gi|529076864|ref|YP_008375867.1|	-	5.2e-07	29.6	0.0	6.1e-07	29.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|529076864|ref|YP_008375867.1|	-	4.4e-06	27.4	0.1	7.1e-06	26.7	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|529076864|ref|YP_008375867.1|	-	0.00018	21.3	0.1	0.00024	20.9	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_24	PF13578.6	gi|529076864|ref|YP_008375867.1|	-	0.0033	18.4	0.3	0.017	16.2	0.1	2.1	1	1	1	2	2	2	1	Methyltransferase	domain
Methyltransf_9	PF08003.11	gi|529076864|ref|YP_008375867.1|	-	0.015	14.2	0.0	0.019	13.9	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1698)
DUF938	PF06080.12	gi|529076864|ref|YP_008375867.1|	-	0.063	13.0	0.0	0.12	12.2	0.0	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF938)
TM_helix	PF05552.12	gi|529076865|ref|YP_008375868.1|	-	0.00013	21.9	17.2	0.00055	19.8	1.3	3.5	3	1	0	3	3	3	2	Conserved	TM	helix
Abhydrolase_9_N	PF15420.6	gi|529076865|ref|YP_008375868.1|	-	7.8	6.4	22.2	68	3.4	18.4	2.8	2	1	1	3	3	3	0	Alpha/beta-hydrolase	family	N-terminus
Abhydrolase_3	PF07859.13	gi|529076866|ref|YP_008375869.1|	-	2.9e-20	73.0	7.1	4.3e-18	66.0	7.1	2.5	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Peptidase_S9	PF00326.21	gi|529076866|ref|YP_008375869.1|	-	6.3e-17	61.8	0.2	2.8e-11	43.3	0.0	2.1	2	0	0	2	2	2	2	Prolyl	oligopeptidase	family
COesterase	PF00135.28	gi|529076866|ref|YP_008375869.1|	-	1.2e-10	40.9	0.2	5.6e-10	38.7	0.2	1.9	1	1	0	1	1	1	1	Carboxylesterase	family
DLH	PF01738.18	gi|529076866|ref|YP_008375869.1|	-	7.8e-09	35.4	0.0	4e-07	29.8	0.0	2.2	1	1	1	2	2	2	1	Dienelactone	hydrolase	family
Hydrolase_4	PF12146.8	gi|529076866|ref|YP_008375869.1|	-	0.00012	21.5	0.1	0.018	14.3	0.0	2.3	2	0	0	2	2	2	1	Serine	aminopeptidase,	S33
LIP	PF03583.14	gi|529076866|ref|YP_008375869.1|	-	0.0011	18.4	0.0	0.17	11.2	0.0	2.1	2	0	0	2	2	2	2	Secretory	lipase
Abhydrolase_2	PF02230.16	gi|529076866|ref|YP_008375869.1|	-	0.012	15.4	0.0	0.19	11.5	0.0	2.1	2	0	0	2	2	2	0	Phospholipase/Carboxylesterase
Peptidase_S15	PF02129.18	gi|529076866|ref|YP_008375869.1|	-	0.014	15.0	0.2	0.076	12.6	0.1	1.9	1	1	1	2	2	2	0	X-Pro	dipeptidyl-peptidase	(S15	family)
FSH1	PF03959.13	gi|529076866|ref|YP_008375869.1|	-	0.02	14.5	0.1	0.041	13.5	0.0	1.4	2	0	0	2	2	2	0	Serine	hydrolase	(FSH1)
Abhydrolase_4	PF08386.10	gi|529076866|ref|YP_008375869.1|	-	0.076	13.1	0.0	0.15	12.2	0.0	1.4	1	0	0	1	1	1	0	TAP-like	protein
Say1_Mug180	PF10340.9	gi|529076866|ref|YP_008375869.1|	-	0.1	11.5	0.0	0.46	9.3	0.0	1.8	2	0	0	2	2	2	0	Steryl	acetyl	hydrolase
Esterase_phd	PF10503.9	gi|529076866|ref|YP_008375869.1|	-	0.11	12.0	4.3	2.7	7.4	0.2	3.3	3	2	1	4	4	4	0	Esterase	PHB	depolymerase
BAAT_C	PF08840.11	gi|529076866|ref|YP_008375869.1|	-	0.17	11.8	0.0	0.48	10.3	0.0	1.6	1	1	0	1	1	1	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
HAD	PF12710.7	gi|529076867|ref|YP_008375870.1|	-	3.7e-25	89.4	0.6	4.6e-25	89.1	0.6	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|529076867|ref|YP_008375870.1|	-	1.7e-14	54.6	6.2	4.8e-14	53.1	6.2	1.7	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|529076867|ref|YP_008375870.1|	-	1e-10	41.8	0.1	7.3e-08	32.5	0.0	3.0	3	0	0	3	3	3	1	haloacid	dehalogenase-like	hydrolase
Put_Phosphatase	PF06888.12	gi|529076867|ref|YP_008375870.1|	-	1.5e-06	27.8	0.0	0.00094	18.6	0.0	2.1	2	0	0	2	2	2	2	Putative	Phosphatase
HAD_2	PF13419.6	gi|529076867|ref|YP_008375870.1|	-	2e-05	24.8	0.0	0.0012	19.0	0.0	2.5	2	1	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
UMPH-1	PF05822.12	gi|529076867|ref|YP_008375870.1|	-	0.0043	16.6	0.0	0.0061	16.1	0.0	1.3	1	0	0	1	1	1	1	Pyrimidine	5'-nucleotidase	(UMPH-1)
DUF4392	PF14336.6	gi|529076867|ref|YP_008375870.1|	-	0.012	15.0	0.5	3.4	7.0	0.1	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4392)
Hydrolase_6	PF13344.6	gi|529076867|ref|YP_008375870.1|	-	0.013	15.6	0.0	0.05	13.7	0.0	2.0	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
Glyco_trans_4_4	PF13579.6	gi|529076867|ref|YP_008375870.1|	-	0.016	15.7	0.2	0.035	14.6	0.2	1.6	1	1	0	1	1	1	0	Glycosyl	transferase	4-like	domain
FBPase_glpX	PF03320.13	gi|529076867|ref|YP_008375870.1|	-	0.029	13.2	0.9	0.99	8.2	0.1	2.1	2	0	0	2	2	2	0	Bacterial	fructose-1,6-bisphosphatase,	glpX-encoded
VbhA	PF18495.1	gi|529076867|ref|YP_008375870.1|	-	0.12	12.3	2.0	7.5	6.5	0.1	3.4	3	0	0	3	3	3	0	Antitoxin	VbhA
GATase	PF00117.28	gi|529076869|ref|YP_008375872.1|	-	1.3e-19	70.7	0.0	1.6e-19	70.4	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|529076869|ref|YP_008375872.1|	-	1e-08	35.2	0.2	8.5e-08	32.2	0.2	2.2	1	1	0	1	1	1	1	Peptidase	C26
GATase_3	PF07685.14	gi|529076869|ref|YP_008375872.1|	-	0.0015	18.2	0.0	0.0024	17.5	0.0	1.4	1	1	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
HTS	PF04204.16	gi|529076869|ref|YP_008375872.1|	-	0.066	12.1	0.1	0.11	11.4	0.1	1.4	1	1	0	1	1	1	0	Homoserine	O-succinyltransferase
NYN	PF01936.18	gi|529076870|ref|YP_008375873.1|	-	1.1e-35	123.3	0.4	1.4e-35	123.0	0.4	1.0	1	0	0	1	1	1	1	NYN	domain
Amidohydro_3	PF07969.11	gi|529076870|ref|YP_008375873.1|	-	0.00062	19.3	0.4	0.00072	19.1	0.4	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
LpxI_N	PF17930.1	gi|529076870|ref|YP_008375873.1|	-	0.083	12.8	0.0	0.3	11.0	0.0	1.8	2	0	0	2	2	2	0	LpxI	N-terminal	domain
FMO-like	PF00743.19	gi|529076870|ref|YP_008375873.1|	-	0.14	10.6	0.0	0.18	10.2	0.0	1.1	1	0	0	1	1	1	0	Flavin-binding	monooxygenase-like
TGT_C2	PF14810.6	gi|529076872|ref|YP_008375875.1|	-	3.9e-26	91.0	0.4	7.2e-26	90.1	0.3	1.5	2	0	0	2	2	2	1	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
PUA	PF01472.20	gi|529076872|ref|YP_008375875.1|	-	2.8e-13	49.6	0.8	4.2e-13	49.1	0.8	1.3	1	0	0	1	1	1	1	PUA	domain
UPF0113	PF03657.13	gi|529076872|ref|YP_008375875.1|	-	0.0088	16.3	0.0	0.013	15.7	0.0	1.3	1	0	0	1	1	1	1	UPF0113	PUA	domain
NAC	PF01849.18	gi|529076873|ref|YP_008375876.1|	-	1.9e-16	59.8	0.4	3.8e-16	58.8	0.1	1.6	2	0	0	2	2	2	1	NAC	domain
Pilin_N	PF07790.11	gi|529076874|ref|YP_008375877.1|	-	1.1e-07	32.7	0.0	2.2e-07	31.7	0.0	1.5	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
TFIIS_C	PF01096.18	gi|529076876|ref|YP_008375879.1|	-	6.1e-19	67.6	4.6	6.1e-19	67.6	4.6	2.1	2	0	0	2	2	2	1	Transcription	factor	S-II	(TFIIS)
TF_Zn_Ribbon	PF08271.12	gi|529076876|ref|YP_008375879.1|	-	2.3e-07	30.2	2.2	5.1e-05	22.7	0.1	2.5	2	1	0	2	2	2	2	TFIIB	zinc-binding
Zn_Tnp_IS1595	PF12760.7	gi|529076876|ref|YP_008375879.1|	-	2.4e-05	24.2	2.6	0.00027	20.8	1.0	2.3	2	0	0	2	2	2	1	Transposase	zinc-ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|529076876|ref|YP_008375879.1|	-	6.9e-05	22.7	0.6	0.052	13.5	0.0	2.6	2	1	0	2	2	2	1	PhnA	Zinc-Ribbon
zf-ribbon_3	PF13248.6	gi|529076876|ref|YP_008375879.1|	-	0.0025	17.2	5.8	0.72	9.4	0.3	3.3	3	0	0	3	3	3	1	zinc-ribbon	domain
DUF3268	PF11672.8	gi|529076876|ref|YP_008375879.1|	-	0.0033	17.8	0.7	0.071	13.4	0.2	2.0	2	0	0	2	2	2	1	zinc-finger-containing	domain
Lar_restr_allev	PF14354.6	gi|529076876|ref|YP_008375879.1|	-	0.0041	17.5	3.3	0.16	12.4	0.9	2.2	2	0	0	2	2	2	1	Restriction	alleviation	protein	Lar
DUF3797	PF12677.7	gi|529076876|ref|YP_008375879.1|	-	0.0047	16.8	1.0	0.041	13.8	0.3	2.6	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF3797)
Zn-ribbon_8	PF09723.10	gi|529076876|ref|YP_008375879.1|	-	0.0048	17.0	5.4	1.1	9.5	0.2	3.2	3	0	0	3	3	3	1	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|529076876|ref|YP_008375879.1|	-	0.0068	16.3	6.6	0.86	9.6	4.3	2.8	2	1	0	2	2	2	1	Putative	transposase	DNA-binding	domain
RNA_POL_M_15KD	PF02150.16	gi|529076876|ref|YP_008375879.1|	-	0.016	15.1	7.9	1.2	9.0	0.1	3.2	3	0	0	3	3	3	0	RNA	polymerases	M/15	Kd	subunit
zinc_ribbon_2	PF13240.6	gi|529076876|ref|YP_008375879.1|	-	0.022	14.5	9.5	3.8	7.4	0.2	3.2	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-RING_7	PF02591.15	gi|529076876|ref|YP_008375879.1|	-	0.023	14.9	3.9	4.7	7.5	0.1	3.0	3	0	0	3	3	3	0	C4-type	zinc	ribbon	domain
Rubredoxin_2	PF18073.1	gi|529076876|ref|YP_008375879.1|	-	0.024	14.4	8.4	2.4	8.0	0.2	3.2	3	0	0	3	3	3	0	Rubredoxin	metal	binding	domain
FdhE	PF04216.12	gi|529076876|ref|YP_008375879.1|	-	0.024	14.5	0.1	0.024	14.5	0.1	1.3	2	0	0	2	2	1	0	Protein	involved	in	formate	dehydrogenase	formation
Zn_ribbon_SprT	PF17283.2	gi|529076876|ref|YP_008375879.1|	-	0.054	13.4	3.5	7.1	6.6	0.1	3.1	3	0	0	3	3	3	0	SprT-like	zinc	ribbon	domain
zinc_ribbon_9	PF14369.6	gi|529076876|ref|YP_008375879.1|	-	0.059	13.6	2.4	1.7	9.0	0.1	2.8	3	0	0	3	3	3	0	zinc-ribbon
Ogr_Delta	PF04606.12	gi|529076876|ref|YP_008375879.1|	-	0.07	13.1	1.5	0.07	13.1	1.5	1.9	2	1	0	2	2	2	0	Ogr/Delta-like	zinc	finger
zf-RRN7	PF11781.8	gi|529076876|ref|YP_008375879.1|	-	0.078	12.7	10.2	3.7	7.3	1.0	3.4	3	0	0	3	3	3	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Terminase_GpA	PF05876.12	gi|529076876|ref|YP_008375879.1|	-	0.078	11.5	3.1	0.09	11.3	3.1	1.2	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
zf_UBZ	PF18439.1	gi|529076876|ref|YP_008375879.1|	-	0.087	12.4	4.8	5.9	6.6	0.2	3.2	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
zf-IS66	PF13005.7	gi|529076876|ref|YP_008375879.1|	-	0.092	13.2	4.8	4.6	7.7	0.1	3.2	3	0	0	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
DNA_RNApol_7kD	PF03604.13	gi|529076876|ref|YP_008375879.1|	-	0.14	11.8	6.1	5.6	6.7	0.3	3.2	3	0	0	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zinc_ribbon_10	PF10058.9	gi|529076876|ref|YP_008375879.1|	-	0.18	11.6	2.7	15	5.4	0.1	3.1	3	0	0	3	3	3	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
YhfH	PF14149.6	gi|529076876|ref|YP_008375879.1|	-	0.18	11.8	6.3	5.4	7.1	0.2	3.1	3	0	0	3	3	3	0	YhfH-like	protein
DZR	PF12773.7	gi|529076876|ref|YP_008375879.1|	-	0.18	11.8	9.0	1.8	8.7	3.6	2.5	1	1	1	2	2	2	0	Double	zinc	ribbon
zinc_ribbon_4	PF13717.6	gi|529076876|ref|YP_008375879.1|	-	0.24	11.3	8.3	1.5	8.8	5.2	2.9	2	1	1	3	3	3	0	zinc-ribbon	domain
Rubredoxin	PF00301.20	gi|529076876|ref|YP_008375879.1|	-	0.3	11.2	7.2	5.9	7.0	0.2	3.2	3	0	0	3	3	3	0	Rubredoxin
zf-RING_4	PF14570.6	gi|529076876|ref|YP_008375879.1|	-	0.51	10.2	4.5	3.8	7.4	0.1	2.5	3	0	0	3	3	2	0	RING/Ubox	like	zinc-binding	domain
A2L_zn_ribbon	PF08792.10	gi|529076876|ref|YP_008375879.1|	-	0.53	10.1	4.5	37	4.2	0.1	3.2	3	0	0	3	3	3	0	A2L	zinc	ribbon	domain
GFA	PF04828.14	gi|529076876|ref|YP_008375879.1|	-	0.65	10.4	5.7	7.3	7.0	0.1	2.9	1	1	2	3	3	3	0	Glutathione-dependent	formaldehyde-activating	enzyme
DUF2387	PF09526.10	gi|529076876|ref|YP_008375879.1|	-	1.5	9.0	6.1	0.46	10.7	2.9	1.8	1	1	1	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
Nudix_N_2	PF14803.6	gi|529076876|ref|YP_008375879.1|	-	1.8	8.5	10.9	5	7.1	5.1	3.1	2	1	1	3	3	3	0	Nudix	N-terminal
UPF0547	PF10571.9	gi|529076876|ref|YP_008375879.1|	-	3.4	7.8	10.8	2.3	8.4	0.4	2.8	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
CpXC	PF14353.6	gi|529076876|ref|YP_008375879.1|	-	3.7	7.6	7.8	12	5.9	0.2	3.0	1	1	1	3	3	3	0	CpXC	protein
Oxidored_q2	PF00420.24	gi|529076877|ref|YP_008375880.1|	-	0.0075	15.9	1.3	0.0075	15.9	1.3	2.2	1	1	1	2	2	2	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
SPC25	PF06703.11	gi|529076877|ref|YP_008375880.1|	-	0.16	11.7	0.2	0.26	11.1	0.2	1.3	1	0	0	1	1	1	0	Microsomal	signal	peptidase	25	kDa	subunit	(SPC25)
Virul_fac_BrkB	PF03631.15	gi|529076877|ref|YP_008375880.1|	-	1.2	8.7	16.2	0.31	10.6	13.2	1.4	1	1	0	1	1	1	0	Virulence	factor	BrkB
Met_10	PF02475.16	gi|529076879|ref|YP_008375882.1|	-	5.2e-58	196.1	0.0	6.6e-58	195.7	0.0	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
Trm5_N	PF18093.1	gi|529076879|ref|YP_008375882.1|	-	4.7e-11	42.4	0.0	1e-10	41.3	0.0	1.6	1	0	0	1	1	1	1	tRNA	methyltransferase	5	N-terminal	domain
Methyltransf_25	PF13649.6	gi|529076879|ref|YP_008375882.1|	-	1.4e-07	32.1	0.1	4.8e-07	30.4	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_15	PF09445.10	gi|529076879|ref|YP_008375882.1|	-	1.5e-06	27.9	0.0	2.2e-06	27.4	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
MTS	PF05175.14	gi|529076879|ref|YP_008375882.1|	-	2.1e-06	27.4	0.0	4e-06	26.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_11	PF08241.12	gi|529076879|ref|YP_008375882.1|	-	0.00017	22.2	0.0	0.00047	20.8	0.0	1.8	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|529076879|ref|YP_008375882.1|	-	0.00023	21.0	0.0	0.00038	20.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.13	gi|529076879|ref|YP_008375882.1|	-	0.00056	19.4	0.0	0.00086	18.8	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Cons_hypoth95	PF03602.15	gi|529076879|ref|YP_008375882.1|	-	0.00077	19.1	0.0	0.0014	18.3	0.0	1.4	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_24	PF13578.6	gi|529076879|ref|YP_008375882.1|	-	0.0035	18.3	0.4	0.031	15.3	0.0	2.3	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_18	PF12847.7	gi|529076879|ref|YP_008375882.1|	-	0.0083	16.1	0.0	0.55	10.2	0.0	2.2	2	0	0	2	2	2	1	Methyltransferase	domain
SRP54_N	PF02881.19	gi|529076879|ref|YP_008375882.1|	-	0.01	16.0	0.7	0.62	10.3	0.2	2.4	2	0	0	2	2	2	0	SRP54-type	protein,	helical	bundle	domain
TRM	PF02005.16	gi|529076879|ref|YP_008375882.1|	-	0.013	14.7	0.1	0.02	14.1	0.1	1.2	1	0	0	1	1	1	0	N2,N2-dimethylguanosine	tRNA	methyltransferase
UPF0020	PF01170.18	gi|529076879|ref|YP_008375882.1|	-	0.013	15.1	0.0	0.023	14.4	0.0	1.3	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Methyltransf_23	PF13489.6	gi|529076879|ref|YP_008375882.1|	-	0.088	12.6	0.0	0.16	11.8	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
MethyltransfD12	PF02086.15	gi|529076879|ref|YP_008375882.1|	-	0.17	11.5	0.0	0.24	11.0	0.0	1.2	1	0	0	1	1	1	0	D12	class	N6	adenine-specific	DNA	methyltransferase
TP_methylase	PF00590.20	gi|529076880|ref|YP_008375883.1|	-	1.5e-23	83.8	1.9	1.5e-23	83.8	1.9	1.3	2	0	0	2	2	2	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Exosortase_EpsH	PF09721.10	gi|529076881|ref|YP_008375884.1|	-	3.4e-13	49.7	21.1	2.1e-12	47.2	21.0	2.0	1	1	0	1	1	1	1	Transmembrane	exosortase	(Exosortase_EpsH)
TraQ	PF09679.10	gi|529076881|ref|YP_008375884.1|	-	0.14	12.1	2.0	0.43	10.5	2.0	1.8	1	0	0	1	1	1	0	Type-F	conjugative	transfer	system	pilin	chaperone	(TraQ)
DUF2754	PF10953.8	gi|529076882|ref|YP_008375885.1|	-	0.29	11.4	6.5	0.38	11.0	6.5	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2754)
DUF5337	PF17272.2	gi|529076882|ref|YP_008375885.1|	-	4.9	7.1	7.3	7.4	6.5	7.3	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5337)
Glyoxalase	PF00903.25	gi|529076883|ref|YP_008375886.1|	-	4.8e-23	81.8	3.8	3.5e-14	53.1	0.7	2.2	2	0	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|529076883|ref|YP_008375886.1|	-	7.5e-11	42.8	1.7	1.8e-05	25.4	0.3	2.2	2	0	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase_4	PF13669.6	gi|529076883|ref|YP_008375886.1|	-	1.6e-10	41.2	1.9	0.00011	22.4	0.5	3.8	1	1	2	3	3	3	3	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.6	gi|529076883|ref|YP_008375886.1|	-	1.1e-05	25.6	0.0	0.23	11.5	0.1	3.3	2	1	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase_2	PF12681.7	gi|529076883|ref|YP_008375886.1|	-	0.014	15.3	1.5	4.2	7.3	0.2	3.9	3	1	0	3	3	3	0	Glyoxalase-like	domain
MMR_HSR1_Xtn	PF16897.5	gi|529076885|ref|YP_008375888.1|	-	4.2e-31	107.1	1.3	9.6e-31	106.0	0.7	1.9	2	0	0	2	2	2	1	C-terminal	region	of	MMR_HSR1	domain
MMR_HSR1	PF01926.23	gi|529076885|ref|YP_008375888.1|	-	2.5e-24	85.6	0.1	6.2e-24	84.3	0.0	1.7	2	0	0	2	2	1	1	50S	ribosome-binding	GTPase
TGS	PF02824.21	gi|529076885|ref|YP_008375888.1|	-	1.8e-15	56.8	0.1	3.6e-15	55.8	0.1	1.6	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.18	gi|529076885|ref|YP_008375888.1|	-	5.6e-14	52.0	2.2	7e-13	48.4	0.1	2.2	1	1	1	2	2	2	1	Ferrous	iron	transport	protein	B
RsgA_GTPase	PF03193.16	gi|529076885|ref|YP_008375888.1|	-	9.2e-08	32.2	0.1	0.011	15.7	0.0	2.6	3	0	0	3	3	2	2	RsgA	GTPase
Dynamin_N	PF00350.23	gi|529076885|ref|YP_008375888.1|	-	5e-06	26.7	0.8	0.11	12.6	0.1	2.6	2	1	1	3	3	2	2	Dynamin	family
MeaB	PF03308.16	gi|529076885|ref|YP_008375888.1|	-	0.0027	16.7	0.1	0.012	14.6	0.0	2.0	2	0	0	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
GTP_EFTU	PF00009.27	gi|529076885|ref|YP_008375888.1|	-	0.014	14.9	0.1	0.73	9.3	0.0	2.9	2	1	1	3	3	3	0	Elongation	factor	Tu	GTP	binding	domain
ThiS	PF02597.20	gi|529076885|ref|YP_008375888.1|	-	0.039	14.6	0.3	0.31	11.7	0.0	2.6	3	0	0	3	3	2	0	ThiS	family
AAA_28	PF13521.6	gi|529076885|ref|YP_008375888.1|	-	0.044	14.0	0.0	0.11	12.7	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|529076885|ref|YP_008375888.1|	-	0.063	13.8	0.0	0.23	12.0	0.0	1.9	2	0	0	2	2	2	0	ABC	transporter
ATP_bind_1	PF03029.17	gi|529076885|ref|YP_008375888.1|	-	0.068	13.0	0.0	15	5.3	0.0	2.5	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
Arf	PF00025.21	gi|529076885|ref|YP_008375888.1|	-	0.071	12.6	0.1	1.1	8.7	0.0	2.3	2	0	0	2	2	2	0	ADP-ribosylation	factor	family
cobW	PF02492.19	gi|529076885|ref|YP_008375888.1|	-	0.092	12.3	0.7	4	7.0	0.0	2.7	3	0	0	3	3	3	0	CobW/HypB/UreG,	nucleotide-binding	domain
AIG1	PF04548.16	gi|529076885|ref|YP_008375888.1|	-	0.12	11.7	0.0	0.22	10.8	0.0	1.4	1	0	0	1	1	1	0	AIG1	family
AAA_29	PF13555.6	gi|529076885|ref|YP_008375888.1|	-	0.13	12.0	0.2	0.43	10.3	0.2	1.9	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.6	gi|529076885|ref|YP_008375888.1|	-	0.58	10.7	3.3	1.8	9.2	0.0	2.8	3	1	1	4	4	4	0	AAA	domain
ABC_tran_CTD	PF16326.5	gi|529076885|ref|YP_008375888.1|	-	5.6	7.3	9.4	1	9.7	3.8	2.3	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
Ribosomal_L11	PF00298.19	gi|529076887|ref|YP_008375890.1|	-	1.5e-19	70.3	0.0	2.2e-19	69.7	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L11,	RNA	binding	domain
Ribosomal_L11_N	PF03946.14	gi|529076887|ref|YP_008375890.1|	-	6e-16	58.0	0.1	1.1e-15	57.2	0.1	1.5	1	0	0	1	1	1	1	Ribosomal	protein	L11,	N-terminal	domain
HATPase_c	PF02518.26	gi|529076888|ref|YP_008375891.1|	-	9.3e-14	51.9	0.0	1.7e-13	51.1	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
dCache_1	PF02743.18	gi|529076888|ref|YP_008375891.1|	-	3e-13	50.2	2.0	4.4e-13	49.6	0.6	2.0	2	1	0	2	2	2	1	Cache	domain
HATPase_c_2	PF13581.6	gi|529076888|ref|YP_008375891.1|	-	2.5e-06	27.5	0.5	6.1e-06	26.2	0.1	1.8	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
LegC3_N	PF18654.1	gi|529076888|ref|YP_008375891.1|	-	0.023	13.9	0.2	0.035	13.3	0.2	1.2	1	0	0	1	1	1	0	LegC3	N-terminal	coiled-coil	domain
HisKA_4TM	PF16926.5	gi|529076888|ref|YP_008375891.1|	-	0.024	14.2	0.1	0.058	13.0	0.1	1.6	1	0	0	1	1	1	0	Archaeal	4TM	region	of	histidine	kinase
DUF445	PF04286.12	gi|529076888|ref|YP_008375891.1|	-	0.14	11.9	1.4	0.19	11.5	0.7	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF445)
Trp_repressor	PF01371.19	gi|529076888|ref|YP_008375891.1|	-	0.46	10.6	2.7	0.41	10.8	0.1	2.3	3	0	0	3	3	3	0	Trp	repressor	protein
Ribosomal_L1	PF00687.21	gi|529076889|ref|YP_008375892.1|	-	1.7e-41	142.2	0.0	2.1e-41	141.9	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L1p/L10e	family
Ribosomal_L10	PF00466.20	gi|529076890|ref|YP_008375893.1|	-	9.2e-21	73.9	0.0	1.5e-20	73.2	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L10
RL10P_insert	PF17777.1	gi|529076890|ref|YP_008375893.1|	-	1.6e-14	53.7	0.0	2.7e-14	52.9	0.0	1.4	1	0	0	1	1	1	1	Insertion	domain	in	60S	ribosomal	protein	L10P
Ribosomal_60s	PF00428.19	gi|529076891|ref|YP_008375894.1|	-	6.2e-13	49.1	28.1	1.2e-12	48.3	28.1	1.5	1	1	0	1	1	1	1	60s	Acidic	ribosomal	protein
RRN3	PF05327.11	gi|529076891|ref|YP_008375894.1|	-	0.0015	17.2	9.1	0.0017	17.0	9.1	1.0	1	0	0	1	1	1	1	RNA	polymerase	I	specific	transcription	initiation	factor	RRN3
NOA36	PF06524.12	gi|529076891|ref|YP_008375894.1|	-	0.1	11.9	14.8	0.12	11.7	14.8	1.1	1	0	0	1	1	1	0	NOA36	protein
TFB6	PF17110.5	gi|529076891|ref|YP_008375894.1|	-	0.15	11.8	2.2	0.18	11.6	2.2	1.1	1	0	0	1	1	1	0	Subunit	11	of	the	general	transcription	factor	TFIIH
Cwf_Cwc_15	PF04889.12	gi|529076891|ref|YP_008375894.1|	-	0.81	9.4	12.6	1.2	8.8	12.6	1.3	1	0	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
Sigma70_ner	PF04546.13	gi|529076891|ref|YP_008375894.1|	-	1	9.2	15.1	1.3	8.9	15.1	1.2	1	0	0	1	1	1	0	Sigma-70,	non-essential	region
BUD22	PF09073.10	gi|529076891|ref|YP_008375894.1|	-	1.6	8.0	10.8	1.7	7.9	10.8	1.1	1	0	0	1	1	1	0	BUD22
CDC45	PF02724.14	gi|529076891|ref|YP_008375894.1|	-	2.2	6.5	10.0	2.4	6.4	10.0	1.0	1	0	0	1	1	1	0	CDC45-like	protein
DUF2457	PF10446.9	gi|529076891|ref|YP_008375894.1|	-	3.7	6.6	19.1	3.9	6.5	19.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2457)
SDA1	PF05285.12	gi|529076891|ref|YP_008375894.1|	-	6.2	6.1	15.1	6.9	6.0	15.1	1.0	1	0	0	1	1	1	0	SDA1
DNA_pol_phi	PF04931.13	gi|529076891|ref|YP_008375894.1|	-	8.7	4.3	19.6	9.5	4.2	19.6	1.1	1	0	0	1	1	1	0	DNA	polymerase	phi
IU_nuc_hydro	PF01156.19	gi|529076892|ref|YP_008375895.1|	-	1.5e-71	241.5	4.1	1.7e-71	241.3	4.1	1.0	1	0	0	1	1	1	1	Inosine-uridine	preferring	nucleoside	hydrolase
PfkB	PF00294.24	gi|529076893|ref|YP_008375896.1|	-	5.9e-58	196.6	6.7	6.6e-58	196.4	6.7	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.12	gi|529076893|ref|YP_008375896.1|	-	2.3e-05	23.9	0.1	3.4e-05	23.3	0.1	1.2	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
Lactamase_B	PF00753.27	gi|529076894|ref|YP_008375897.1|	-	4.5e-13	49.6	9.1	9.7e-13	48.6	9.1	1.5	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Rhodanese	PF00581.20	gi|529076894|ref|YP_008375897.1|	-	1.5e-06	28.6	0.0	3.2e-06	27.6	0.0	1.6	1	0	0	1	1	1	1	Rhodanese-like	domain
Lactamase_B_2	PF12706.7	gi|529076894|ref|YP_008375897.1|	-	0.0061	16.1	0.6	0.012	15.1	0.6	1.5	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Gon7	PF08738.10	gi|529076894|ref|YP_008375897.1|	-	0.083	13.0	0.1	0.23	11.6	0.0	1.7	2	0	0	2	2	2	0	Gon7	family
Sulf_transp	PF04143.14	gi|529076895|ref|YP_008375898.1|	-	8e-14	51.9	10.1	1.2e-13	51.3	10.1	1.2	1	0	0	1	1	1	1	Sulphur	transport
Trp_oprn_chp	PF09534.10	gi|529076895|ref|YP_008375898.1|	-	0.018	14.9	1.5	0.018	14.9	1.5	1.9	2	1	0	2	2	2	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
DUF4231	PF14015.6	gi|529076895|ref|YP_008375898.1|	-	9	6.8	7.1	3.8	8.0	0.1	2.5	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF4231)
Sulf_transp	PF04143.14	gi|529076896|ref|YP_008375899.1|	-	1.5e-05	24.7	8.4	1.5e-05	24.7	8.4	2.1	1	1	1	2	2	2	2	Sulphur	transport
PHO4	PF01384.20	gi|529076897|ref|YP_008375900.1|	-	2.9e-38	131.8	30.2	3.1e-38	131.7	29.4	1.5	1	1	0	1	1	1	1	Phosphate	transporter	family
Usp	PF00582.26	gi|529076898|ref|YP_008375901.1|	-	9.2e-38	129.9	1.1	1.4e-20	74.3	0.6	2.8	2	1	0	2	2	2	2	Universal	stress	protein	family
TauE	PF01925.19	gi|529076900|ref|YP_008375903.1|	-	9.4e-38	130.2	25.3	9.4e-38	130.2	25.3	1.7	1	1	0	1	1	1	1	Sulfite	exporter	TauE/SafE
DPRP	PF04244.13	gi|529076901|ref|YP_008375904.1|	-	2.9e-52	177.7	0.0	4.6e-52	177.1	0.0	1.3	1	0	0	1	1	1	1	Deoxyribodipyrimidine	photo-lyase-related	protein
FAD_binding_7	PF03441.14	gi|529076901|ref|YP_008375904.1|	-	0.012	15.1	0.2	0.025	14.0	0.2	1.5	1	0	0	1	1	1	0	FAD	binding	domain	of	DNA	photolyase
MttA_Hcf106	PF02416.16	gi|529076903|ref|YP_008375906.1|	-	1.7e-12	46.5	0.0	1.9e-12	46.3	0.0	1.2	1	0	0	1	1	1	1	mttA/Hcf106	family
DUF4148	PF13663.6	gi|529076903|ref|YP_008375906.1|	-	0.038	14.2	0.1	0.063	13.5	0.1	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4148)
AhpC-TSA	PF00578.21	gi|529076904|ref|YP_008375907.1|	-	4.7e-33	113.8	0.0	5.5e-33	113.5	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|529076904|ref|YP_008375907.1|	-	1.1e-24	86.9	0.0	1.2e-24	86.7	0.0	1.0	1	0	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.6	gi|529076904|ref|YP_008375907.1|	-	9.5e-06	25.7	0.1	0.00093	19.3	0.0	2.1	2	0	0	2	2	2	2	AhpC/TSA	antioxidant	enzyme
DUF899	PF05988.12	gi|529076904|ref|YP_008375907.1|	-	0.02	14.4	0.0	0.027	14.0	0.0	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF899)
DUF3103	PF11301.8	gi|529076904|ref|YP_008375907.1|	-	0.068	11.9	0.3	0.092	11.5	0.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3103)
HD	PF01966.22	gi|529076905|ref|YP_008375908.1|	-	6.1e-09	36.2	1.2	1.9e-08	34.6	0.7	2.0	2	0	0	2	2	2	1	HD	domain
SurE	PF01975.17	gi|529076907|ref|YP_008375910.1|	-	4.1e-45	154.0	0.3	5.2e-45	153.6	0.3	1.1	1	0	0	1	1	1	1	Survival	protein	SurE
TraI_2	PF07514.11	gi|529076907|ref|YP_008375910.1|	-	0.015	14.2	0.0	0.023	13.7	0.0	1.2	1	0	0	1	1	1	0	Putative	helicase
Methyltransf_23	PF13489.6	gi|529076908|ref|YP_008375911.1|	-	8.2e-12	45.3	0.0	1.3e-11	44.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|529076908|ref|YP_008375911.1|	-	2.4e-09	37.8	0.0	5e-09	36.8	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|529076908|ref|YP_008375911.1|	-	2.5e-07	31.2	0.0	5.8e-07	30.1	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|529076908|ref|YP_008375911.1|	-	1.8e-06	27.8	0.0	4.3e-06	26.6	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|529076908|ref|YP_008375911.1|	-	2.7e-06	28.0	0.0	6.9e-06	26.7	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Rsm22	PF09243.10	gi|529076908|ref|YP_008375911.1|	-	1.4e-05	24.5	0.0	2.3e-05	23.8	0.0	1.3	1	0	0	1	1	1	1	Mitochondrial	small	ribosomal	subunit	Rsm22
MetW	PF07021.12	gi|529076908|ref|YP_008375911.1|	-	0.0074	15.9	0.0	0.016	14.8	0.0	1.4	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
DREV	PF05219.12	gi|529076908|ref|YP_008375911.1|	-	0.038	13.1	0.0	0.063	12.4	0.0	1.3	1	0	0	1	1	1	0	DREV	methyltransferase
GidB	PF02527.15	gi|529076908|ref|YP_008375911.1|	-	0.097	12.0	0.0	0.26	10.6	0.0	1.6	1	1	0	1	1	1	0	rRNA	small	subunit	methyltransferase	G
PDH	PF02153.17	gi|529076909|ref|YP_008375912.1|	-	1.7e-12	46.9	0.3	2.5e-11	43.1	0.2	2.0	1	1	0	1	1	1	1	Prephenate	dehydrogenase
ApbA	PF02558.16	gi|529076909|ref|YP_008375912.1|	-	0.014	15.0	0.1	0.12	12.0	0.1	2.1	1	1	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
F420_oxidored	PF03807.17	gi|529076909|ref|YP_008375912.1|	-	0.034	14.7	0.0	0.087	13.4	0.0	1.7	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
GFO_IDH_MocA	PF01408.22	gi|529076909|ref|YP_008375912.1|	-	0.089	13.6	0.0	0.28	12.0	0.0	2.0	1	1	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
FAA_hydrolase	PF01557.18	gi|529076910|ref|YP_008375913.1|	-	4.1e-65	219.5	0.0	4.9e-65	219.2	0.0	1.1	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
DUF2437	PF10370.9	gi|529076910|ref|YP_008375913.1|	-	0.71	10.8	2.9	1.4	9.9	0.1	2.8	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF2437)
Rad50_zn_hook	PF04423.14	gi|529076911|ref|YP_008375914.1|	-	0.045	13.6	0.1	0.067	13.0	0.1	1.3	1	0	0	1	1	1	0	Rad50	zinc	hook	motif
Zn-ribbon_8	PF09723.10	gi|529076911|ref|YP_008375914.1|	-	0.061	13.5	0.1	0.093	12.9	0.1	1.4	1	0	0	1	1	1	0	Zinc	ribbon	domain
HMG-CoA_red	PF00368.18	gi|529076912|ref|YP_008375915.1|	-	2e-128	428.5	6.1	2.3e-128	428.3	6.1	1.0	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	reductase
CD20	PF04103.15	gi|529076913|ref|YP_008375916.1|	-	8.4	6.5	17.3	3.2	7.8	2.1	2.1	2	0	0	2	2	2	0	CD20-like	family
TrmB	PF01978.19	gi|529076915|ref|YP_008375918.1|	-	0.041	13.8	0.0	0.067	13.1	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF2072	PF09845.9	gi|529076915|ref|YP_008375918.1|	-	0.048	13.9	0.1	0.064	13.5	0.1	1.3	1	0	0	1	1	1	0	Zn-ribbon	containing	protein
HTH_41	PF14502.6	gi|529076915|ref|YP_008375918.1|	-	0.065	12.9	0.0	0.13	12.0	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|529076915|ref|YP_008375918.1|	-	0.076	13.4	0.0	0.21	12.0	0.0	1.7	2	0	0	2	2	2	0	Transcriptional	regulator
MarR_2	PF12802.7	gi|529076915|ref|YP_008375918.1|	-	0.079	12.9	0.5	0.21	11.5	0.0	1.9	2	1	0	2	2	2	0	MarR	family
TerY_C	PF15616.6	gi|529076915|ref|YP_008375918.1|	-	0.13	12.4	0.2	0.18	11.9	0.2	1.3	1	0	0	1	1	1	0	TerY-C	metal	binding	domain
zinc_ribbon_4	PF13717.6	gi|529076915|ref|YP_008375918.1|	-	0.2	11.6	1.1	5.5	7.0	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-CSL	PF05207.13	gi|529076915|ref|YP_008375918.1|	-	0.2	11.4	2.0	9.9	6.0	0.5	2.5	2	0	0	2	2	2	0	CSL	zinc	finger
FYDLN_acid	PF09538.10	gi|529076915|ref|YP_008375918.1|	-	0.61	10.8	3.5	1.6	9.5	3.5	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(FYDLN_acid)
Acetyltransf_10	PF13673.7	gi|529076916|ref|YP_008375919.1|	-	6.5e-27	94.0	0.2	7.5e-27	93.8	0.2	1.0	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|529076916|ref|YP_008375919.1|	-	4.8e-15	55.8	0.2	6.3e-15	55.4	0.2	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|529076916|ref|YP_008375919.1|	-	5.8e-13	49.1	0.1	9e-13	48.5	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_5	PF13444.6	gi|529076916|ref|YP_008375919.1|	-	1.5e-05	25.6	0.5	3.2e-05	24.6	0.1	1.9	1	1	1	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|529076916|ref|YP_008375919.1|	-	0.0004	20.4	0.5	0.0023	18.0	0.1	1.9	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|529076916|ref|YP_008375919.1|	-	0.00054	19.9	0.2	0.0012	18.7	0.2	1.6	1	1	0	1	1	1	1	FR47-like	protein
Acetyltransf_CG	PF14542.6	gi|529076916|ref|YP_008375919.1|	-	0.0021	18.1	0.0	0.0049	17.0	0.0	1.6	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_4	PF13420.7	gi|529076916|ref|YP_008375919.1|	-	0.0056	16.8	0.0	0.008	16.3	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
PanZ	PF12568.8	gi|529076916|ref|YP_008375919.1|	-	0.13	12.0	0.0	0.16	11.7	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain,	PanZ
Iso_dh	PF00180.20	gi|529076917|ref|YP_008375920.1|	-	7e-103	344.4	0.0	9.2e-103	344.0	0.0	1.1	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
Thioredoxin_4	PF13462.6	gi|529076918|ref|YP_008375921.1|	-	1.6e-29	103.2	0.0	2e-29	102.9	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
DSBA	PF01323.20	gi|529076918|ref|YP_008375921.1|	-	9.5e-11	41.8	0.7	7.4e-09	35.7	0.7	2.1	1	1	0	1	1	1	1	DSBA-like	thioredoxin	domain
Thioredoxin_3	PF13192.6	gi|529076918|ref|YP_008375921.1|	-	0.072	13.1	0.0	0.16	12.0	0.0	1.6	1	0	0	1	1	1	0	Thioredoxin	domain
Trm56	PF01994.16	gi|529076919|ref|YP_008375922.1|	-	1.4e-46	157.3	0.0	1.7e-46	157.0	0.0	1.1	1	0	0	1	1	1	1	tRNA	ribose	2'-O-methyltransferase,	aTrm56
TFIIE_alpha	PF02002.17	gi|529076920|ref|YP_008375923.1|	-	7.2e-18	64.4	0.3	1e-17	63.9	0.0	1.4	2	0	0	2	2	2	1	TFIIE	alpha	subunit
Zn-ribbon_8	PF09723.10	gi|529076920|ref|YP_008375923.1|	-	0.00085	19.4	2.1	0.0037	17.3	2.2	2.0	1	1	1	2	2	2	2	Zinc	ribbon	domain
Sigma70_r3	PF04539.16	gi|529076920|ref|YP_008375923.1|	-	0.0028	17.7	0.0	0.006	16.7	0.0	1.6	1	0	0	1	1	1	1	Sigma-70	region	3
TF_Zn_Ribbon	PF08271.12	gi|529076920|ref|YP_008375923.1|	-	0.015	14.8	4.4	0.072	12.6	4.0	2.4	1	1	1	2	2	2	0	TFIIB	zinc-binding
zf-HYPF	PF07503.12	gi|529076920|ref|YP_008375923.1|	-	0.017	14.9	0.1	1.8	8.4	0.0	2.5	2	0	0	2	2	2	0	HypF	finger
HypA	PF01155.19	gi|529076920|ref|YP_008375923.1|	-	0.019	15.0	0.0	0.028	14.5	0.0	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc-ribbons_6	PF07191.12	gi|529076920|ref|YP_008375923.1|	-	0.022	14.8	0.0	0.033	14.2	0.0	1.3	1	0	0	1	1	1	0	zinc-ribbons
PhnA_Zn_Ribbon	PF08274.12	gi|529076920|ref|YP_008375923.1|	-	0.035	14.1	1.4	2	8.4	0.1	2.4	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
DNA_ligase_ZBD	PF03119.16	gi|529076920|ref|YP_008375923.1|	-	0.053	13.6	0.0	0.1	12.6	0.0	1.5	1	0	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
NRDD	PF13597.6	gi|529076920|ref|YP_008375923.1|	-	0.056	12.2	0.0	0.068	11.9	0.0	1.1	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
zf-Mss51	PF13824.6	gi|529076920|ref|YP_008375923.1|	-	0.14	12.3	2.5	2.9	8.1	2.1	2.5	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DZR	PF12773.7	gi|529076920|ref|YP_008375923.1|	-	0.14	12.2	0.5	0.41	10.7	0.5	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|529076920|ref|YP_008375923.1|	-	0.2	11.1	1.2	4.1	7.0	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
TFIIS_C	PF01096.18	gi|529076920|ref|YP_008375923.1|	-	0.27	11.1	0.8	11	5.9	0.1	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf_UBZ	PF18439.1	gi|529076920|ref|YP_008375923.1|	-	0.3	10.7	4.9	6.3	6.5	0.1	2.8	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
HSBP1	PF06825.12	gi|529076920|ref|YP_008375923.1|	-	0.5	10.2	3.8	0.3	11.0	1.5	1.8	2	0	0	2	2	2	0	Heat	shock	factor	binding	protein	1
DUF2110	PF09883.9	gi|529076921|ref|YP_008375924.1|	-	5.5e-96	320.5	0.0	6.6e-96	320.2	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2110)
RNA_pol_Rpb2_3	PF04565.16	gi|529076921|ref|YP_008375924.1|	-	0.13	12.4	0.0	0.33	11.2	0.0	1.6	1	0	0	1	1	1	0	RNA	polymerase	Rpb2,	domain	3
SKG6	PF08693.10	gi|529076922|ref|YP_008375925.1|	-	0.037	13.4	1.8	0.073	12.5	1.8	1.5	1	0	0	1	1	1	0	Transmembrane	alpha-helix	domain
MoCF_biosynth	PF00994.24	gi|529076923|ref|YP_008375926.1|	-	1.1e-35	122.4	0.4	1.7e-35	121.8	0.4	1.2	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
DUF5419	PF17441.2	gi|529076923|ref|YP_008375926.1|	-	0.032	14.3	1.4	0.067	13.3	0.6	2.0	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5419)
B12-binding	PF02310.19	gi|529076923|ref|YP_008375926.1|	-	0.065	13.3	3.6	0.096	12.7	1.1	2.3	2	1	1	3	3	3	0	B12	binding	domain
CinA_KH	PF18146.1	gi|529076923|ref|YP_008375926.1|	-	0.096	12.8	0.2	0.24	11.6	0.0	1.7	2	0	0	2	2	2	0	Damage-inducible	protein	CinA	KH	domain
Glyco_trans_4_4	PF13579.6	gi|529076923|ref|YP_008375926.1|	-	0.44	11.0	5.8	4	7.9	0.2	2.7	1	1	1	2	2	2	0	Glycosyl	transferase	4-like	domain
DnaJ_C	PF01556.18	gi|529076926|ref|YP_008375929.1|	-	8.3e-42	142.8	0.0	1.1e-41	142.4	0.0	1.2	1	0	0	1	1	1	1	DnaJ	C	terminal	domain
DnaJ	PF00226.31	gi|529076926|ref|YP_008375929.1|	-	9.5e-24	83.3	4.3	2e-23	82.3	4.3	1.5	1	0	0	1	1	1	1	DnaJ	domain
DnaJ_CXXCXGXG	PF00684.19	gi|529076926|ref|YP_008375929.1|	-	4.6e-13	49.3	14.4	8.8e-13	48.4	14.4	1.5	1	0	0	1	1	1	1	DnaJ	central	domain
Anti-TRAP	PF15777.5	gi|529076926|ref|YP_008375929.1|	-	0.0083	16.1	17.0	0.059	13.3	5.2	2.5	1	1	1	2	2	2	2	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
DZR	PF12773.7	gi|529076926|ref|YP_008375929.1|	-	0.013	15.5	10.9	0.031	14.3	11.0	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
GRP	PF07172.11	gi|529076926|ref|YP_008375929.1|	-	0.048	14.4	11.9	0.16	12.7	11.9	1.9	1	0	0	1	1	1	0	Glycine	rich	protein	family
RPT	PF13446.6	gi|529076926|ref|YP_008375929.1|	-	0.06	13.3	0.1	0.13	12.2	0.1	1.5	1	0	0	1	1	1	0	A	repeated	domain	in	UCH-protein
CPP1-like	PF11833.8	gi|529076926|ref|YP_008375929.1|	-	0.35	10.5	1.0	5.2	6.7	0.6	2.2	2	0	0	2	2	2	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
DUF5351	PF17302.2	gi|529076926|ref|YP_008375929.1|	-	0.41	10.9	24.5	1.3	9.2	0.4	4.3	4	0	0	4	4	4	0	Family	of	unknown	function	(DUF5351)
TackOD1	PF18551.1	gi|529076926|ref|YP_008375929.1|	-	0.5	10.0	6.3	1.1	8.9	1.0	2.4	1	1	1	2	2	2	0	Thaumarchaeal	output	domain	1
A2L_zn_ribbon	PF08792.10	gi|529076926|ref|YP_008375929.1|	-	1.6	8.6	11.1	1.2	8.9	0.2	3.6	2	2	1	3	3	3	0	A2L	zinc	ribbon	domain
HhH-GPD	PF00730.25	gi|529076927|ref|YP_008375930.1|	-	1.1e-12	48.4	0.0	1.4e-12	48.0	0.0	1.1	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH_5	PF14520.6	gi|529076927|ref|YP_008375930.1|	-	0.0091	16.6	0.0	2.3	8.9	0.0	2.5	2	0	0	2	2	2	2	Helix-hairpin-helix	domain
DNA_pol_lambd_f	PF10391.9	gi|529076927|ref|YP_008375930.1|	-	0.12	12.3	0.0	0.24	11.3	0.0	1.5	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
Hexapep	PF00132.24	gi|529076928|ref|YP_008375931.1|	-	1.2e-11	43.8	2.3	1.6e-05	24.5	0.2	3.0	2	1	1	3	3	3	2	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|529076928|ref|YP_008375931.1|	-	2.9e-05	23.7	7.3	5e-05	23.0	0.7	3.0	2	1	0	2	2	2	1	Hexapeptide	repeat	of	succinyl-transferase
SATase_N	PF06426.14	gi|529076928|ref|YP_008375931.1|	-	0.0019	18.5	0.0	0.003	17.9	0.0	1.3	1	0	0	1	1	1	1	Serine	acetyltransferase,	N-terminal
NikR_C	PF08753.11	gi|529076929|ref|YP_008375932.1|	-	1.7e-19	69.7	1.5	1.7e-19	69.7	1.5	1.6	2	0	0	2	2	2	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.21	gi|529076929|ref|YP_008375932.1|	-	1.2e-07	31.4	0.0	2.3e-07	30.5	0.0	1.5	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
HicB_lk_antitox	PF15919.5	gi|529076929|ref|YP_008375932.1|	-	0.0061	16.7	0.0	0.01	15.9	0.0	1.4	1	0	0	1	1	1	1	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
GSCFA	PF08885.11	gi|529076929|ref|YP_008375932.1|	-	0.039	13.6	0.0	0.041	13.5	0.0	1.2	1	0	0	1	1	1	0	GSCFA	family
RHH_5	PF07878.11	gi|529076929|ref|YP_008375932.1|	-	0.11	12.5	0.0	0.22	11.5	0.0	1.4	1	0	0	1	1	1	0	CopG-like	RHH_1	or	ribbon-helix-helix	domain,	RHH_5
Pro_CA	PF00484.19	gi|529076930|ref|YP_008375933.1|	-	9.5e-27	94.2	0.0	1.2e-26	93.9	0.0	1.1	1	0	0	1	1	1	1	Carbonic	anhydrase
HTH_24	PF13412.6	gi|529076931|ref|YP_008375934.1|	-	1.9e-13	49.8	0.3	3.1e-13	49.1	0.3	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|529076931|ref|YP_008375934.1|	-	2.7e-12	46.3	1.1	5.9e-12	45.2	1.0	1.6	2	0	0	2	2	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|529076931|ref|YP_008375934.1|	-	7.6e-07	29.0	0.1	1.4e-06	28.2	0.1	1.5	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.7	gi|529076931|ref|YP_008375934.1|	-	1.9e-05	24.5	0.0	3.9e-05	23.4	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|529076931|ref|YP_008375934.1|	-	3.1e-05	23.7	0.0	5.2e-05	23.0	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|529076931|ref|YP_008375934.1|	-	8e-05	22.2	0.0	0.00015	21.4	0.0	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_DeoR	PF08220.12	gi|529076931|ref|YP_008375934.1|	-	0.00013	21.6	0.5	0.011	15.4	0.1	2.4	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
HTH_5	PF01022.20	gi|529076931|ref|YP_008375934.1|	-	0.00024	20.9	0.0	0.00042	20.1	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Rrf2	PF02082.20	gi|529076931|ref|YP_008375934.1|	-	0.00025	21.3	0.0	0.00085	19.6	0.0	1.7	2	0	0	2	2	2	1	Transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|529076931|ref|YP_008375934.1|	-	0.00044	20.4	0.0	0.00096	19.3	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_20	PF12840.7	gi|529076931|ref|YP_008375934.1|	-	0.00075	19.5	0.0	0.0024	17.9	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|529076931|ref|YP_008375934.1|	-	0.00079	19.4	0.0	0.0015	18.4	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_28	PF13518.6	gi|529076931|ref|YP_008375934.1|	-	0.0036	17.4	0.0	0.0068	16.5	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
Put_DNA-bind_N	PF06971.13	gi|529076931|ref|YP_008375934.1|	-	0.0061	16.5	0.0	0.013	15.5	0.0	1.5	1	0	0	1	1	1	1	Putative	DNA-binding	protein	N-terminus
GntR	PF00392.21	gi|529076931|ref|YP_008375934.1|	-	0.012	15.3	0.1	0.029	14.0	0.0	1.7	2	0	0	2	2	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_36	PF13730.6	gi|529076931|ref|YP_008375934.1|	-	0.016	15.2	0.0	0.024	14.6	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|529076931|ref|YP_008375934.1|	-	0.023	15.2	0.2	0.066	13.7	0.1	1.8	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_23	PF13384.6	gi|529076931|ref|YP_008375934.1|	-	0.026	14.3	0.0	0.049	13.5	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_10	PF04967.12	gi|529076931|ref|YP_008375934.1|	-	0.027	14.2	0.1	0.047	13.5	0.1	1.3	1	0	0	1	1	1	0	HTH	DNA	binding	domain
MarR	PF01047.22	gi|529076931|ref|YP_008375934.1|	-	0.028	14.3	0.0	0.086	12.8	0.0	1.7	2	0	0	2	2	2	0	MarR	family
HTH_Mga	PF08280.11	gi|529076931|ref|YP_008375934.1|	-	0.038	14.0	0.0	0.064	13.3	0.0	1.3	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_Tnp_ISL3	PF13542.6	gi|529076931|ref|YP_008375934.1|	-	0.071	12.5	0.1	0.17	11.3	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_19	PF12844.7	gi|529076931|ref|YP_008375934.1|	-	0.077	13.0	0.4	0.18	11.8	0.4	1.7	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|529076931|ref|YP_008375934.1|	-	0.1	12.6	0.0	0.2	11.6	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
TrmB	PF01978.19	gi|529076931|ref|YP_008375934.1|	-	0.14	12.1	0.1	0.39	10.6	0.0	1.8	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_12	PF08461.10	gi|529076931|ref|YP_008375934.1|	-	0.16	11.9	0.3	0.7	9.9	0.3	2.2	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
Phage_rep_O	PF04492.13	gi|529076931|ref|YP_008375934.1|	-	0.19	12.3	0.0	0.63	10.7	0.0	1.7	2	0	0	2	2	2	0	Bacteriophage	replication	protein	O
Proton_antipo_M	PF00361.20	gi|529076933|ref|YP_008375936.1|	-	2.3e-39	135.3	13.6	2.3e-39	135.3	13.6	2.4	3	0	0	3	3	3	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|529076933|ref|YP_008375936.1|	-	9.6e-09	35.2	0.1	6.3e-08	32.6	0.1	2.5	1	0	0	1	1	1	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
DUF2309	PF10070.9	gi|529076934|ref|YP_008375937.1|	-	2.1e-261	869.6	0.0	2.4e-261	869.4	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2309)
Hexapep	PF00132.24	gi|529076935|ref|YP_008375938.1|	-	7.9e-09	34.9	0.4	3.2e-08	33.0	0.5	2.0	2	0	0	2	2	2	1	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|529076935|ref|YP_008375938.1|	-	1.4e-07	31.1	0.4	4e-07	29.7	0.4	1.8	1	0	0	1	1	1	1	Hexapeptide	repeat	of	succinyl-transferase
MS_channel	PF00924.18	gi|529076936|ref|YP_008375939.1|	-	1e-16	61.1	0.4	1e-16	61.1	0.4	2.2	2	1	1	3	3	3	1	Mechanosensitive	ion	channel
TM_helix	PF05552.12	gi|529076936|ref|YP_008375939.1|	-	0.00056	19.8	4.6	0.022	14.7	0.5	3.5	3	0	0	3	3	3	2	Conserved	TM	helix
MIG-14_Wnt-bd	PF06664.12	gi|529076936|ref|YP_008375939.1|	-	0.083	12.1	7.4	0.019	14.2	2.5	2.0	1	1	1	2	2	2	0	Wnt-binding	factor	required	for	Wnt	secretion
DUF1043	PF06295.12	gi|529076936|ref|YP_008375939.1|	-	0.5	10.4	1.2	1	9.4	0.1	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1043)
FtsX	PF02687.21	gi|529076936|ref|YP_008375939.1|	-	1.3	9.5	23.2	0.18	12.3	5.5	2.8	2	1	0	2	2	2	0	FtsX-like	permease	family
DUF4713	PF15831.5	gi|529076936|ref|YP_008375939.1|	-	3	8.3	5.3	0.49	10.9	0.4	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4713)
DisA_N	PF02457.16	gi|529076937|ref|YP_008375940.1|	-	1.8e-21	75.9	0.0	3.8e-21	74.9	0.0	1.6	2	0	0	2	2	2	1	DisA	bacterial	checkpoint	controller	nucleotide-binding
Cellulase	PF00150.18	gi|529076938|ref|YP_008375941.1|	-	8.3e-28	97.6	0.1	1.1e-27	97.2	0.1	1.1	1	0	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
Dockerin_1	PF00404.18	gi|529076938|ref|YP_008375941.1|	-	2.7e-07	30.7	1.2	6.2e-07	29.5	1.2	1.7	1	0	0	1	1	1	1	Dockerin	type	I	domain
TAT_signal	PF10518.9	gi|529076938|ref|YP_008375941.1|	-	0.0034	17.1	1.4	0.0079	16.0	1.4	1.7	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
EF-hand_1	PF00036.32	gi|529076938|ref|YP_008375941.1|	-	0.012	15.1	2.2	1.2	8.8	0.0	3.6	3	0	0	3	3	3	0	EF	hand
EF-hand_6	PF13405.6	gi|529076938|ref|YP_008375941.1|	-	0.17	11.9	2.3	0.5	10.4	0.0	2.8	3	0	0	3	3	3	0	EF-hand	domain
UCR_Fe-S_N	PF10399.9	gi|529076938|ref|YP_008375941.1|	-	0.31	10.4	3.1	0.64	9.4	3.1	1.6	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
COX3	PF00510.18	gi|529076939|ref|YP_008375942.1|	-	1.5e-32	113.5	18.4	2.9e-32	112.5	18.4	1.5	1	1	0	1	1	1	1	Cytochrome	c	oxidase	subunit	III
TAT_signal	PF10518.9	gi|529076939|ref|YP_008375942.1|	-	0.49	10.3	0.1	0.49	10.3	0.1	2.7	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
zf-C2H2	PF00096.26	gi|529076941|ref|YP_008375944.1|	-	0.0011	19.3	0.0	0.0017	18.7	0.0	1.3	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
DNA_ligase_ZBD	PF03119.16	gi|529076941|ref|YP_008375944.1|	-	0.012	15.7	0.1	0.015	15.3	0.1	1.3	1	0	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zinc_ribbon_9	PF14369.6	gi|529076941|ref|YP_008375944.1|	-	0.026	14.8	0.4	0.046	14.0	0.4	1.4	1	0	0	1	1	1	0	zinc-ribbon
zf-FPG_IleRS	PF06827.14	gi|529076941|ref|YP_008375944.1|	-	0.042	13.7	0.2	0.068	13.1	0.2	1.3	1	0	0	1	1	1	0	Zinc	finger	found	in	FPG	and	IleRS
Rad50_zn_hook	PF04423.14	gi|529076941|ref|YP_008375944.1|	-	0.093	12.6	0.4	0.093	12.6	0.4	1.9	2	0	0	2	2	2	0	Rad50	zinc	hook	motif
zf-C2H2_4	PF13894.6	gi|529076941|ref|YP_008375944.1|	-	0.11	13.4	0.1	0.18	12.7	0.1	1.4	1	0	0	1	1	1	0	C2H2-type	zinc	finger
NAD_binding_2	PF03446.15	gi|529076942|ref|YP_008375945.1|	-	1.5e-43	148.7	0.7	2.3e-43	148.1	0.7	1.2	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_binding_11	PF14833.6	gi|529076942|ref|YP_008375945.1|	-	1.2e-25	90.1	0.0	2.2e-25	89.3	0.0	1.4	1	0	0	1	1	1	1	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
F420_oxidored	PF03807.17	gi|529076942|ref|YP_008375945.1|	-	4.4e-08	33.6	0.1	2.1e-07	31.4	0.0	2.0	1	1	1	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.19	gi|529076942|ref|YP_008375945.1|	-	2.4e-07	30.3	0.0	3.3e-07	29.8	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|529076942|ref|YP_008375945.1|	-	8.4e-05	22.2	0.0	0.00013	21.5	0.0	1.3	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
3HCDH_N	PF02737.18	gi|529076942|ref|YP_008375945.1|	-	0.00057	19.8	0.0	0.0011	18.9	0.0	1.5	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Shikimate_DH	PF01488.20	gi|529076942|ref|YP_008375945.1|	-	0.0011	19.0	0.0	0.0024	17.9	0.0	1.6	1	1	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|529076942|ref|YP_008375945.1|	-	0.0032	17.7	0.0	0.017	15.3	0.0	2.0	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
ApbA	PF02558.16	gi|529076942|ref|YP_008375945.1|	-	0.0078	15.9	0.0	0.014	15.1	0.0	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Synaphin	PF05835.12	gi|529076943|ref|YP_008375946.1|	-	0.028	14.7	0.7	0.057	13.7	0.7	1.4	1	0	0	1	1	1	0	Synaphin	protein
T2SSF	PF00482.23	gi|529076943|ref|YP_008375946.1|	-	0.039	13.9	0.1	0.052	13.5	0.1	1.3	1	0	0	1	1	1	0	Type	II	secretion	system	(T2SS),	protein	F
PTPS	PF01242.19	gi|529076943|ref|YP_008375946.1|	-	0.054	13.5	0.0	0.16	12.0	0.0	1.7	1	1	0	1	1	1	0	6-pyruvoyl	tetrahydropterin	synthase
Abhydrolase_2	PF02230.16	gi|529076944|ref|YP_008375947.1|	-	3.8e-18	66.1	0.0	5.9e-17	62.2	0.0	1.9	1	1	0	1	1	1	1	Phospholipase/Carboxylesterase
DLH	PF01738.18	gi|529076944|ref|YP_008375947.1|	-	1.1e-07	31.7	0.0	1.3e-07	31.4	0.0	1.2	1	0	0	1	1	1	1	Dienelactone	hydrolase	family
Hydrolase_4	PF12146.8	gi|529076944|ref|YP_008375947.1|	-	1.3e-06	27.9	0.2	0.018	14.3	0.0	3.0	2	1	1	3	3	3	2	Serine	aminopeptidase,	S33
Abhydrolase_1	PF00561.20	gi|529076944|ref|YP_008375947.1|	-	6.2e-05	22.8	0.0	8.6e-05	22.3	0.0	1.2	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Esterase_phd	PF10503.9	gi|529076944|ref|YP_008375947.1|	-	0.00022	20.8	0.7	0.00037	20.1	0.6	1.5	1	1	0	1	1	1	1	Esterase	PHB	depolymerase
Abhydrolase_6	PF12697.7	gi|529076944|ref|YP_008375947.1|	-	0.00095	19.8	2.7	0.0084	16.7	0.9	2.0	1	1	1	2	2	2	1	Alpha/beta	hydrolase	family
FSH1	PF03959.13	gi|529076944|ref|YP_008375947.1|	-	0.0012	18.5	0.0	0.0012	18.5	0.0	1.2	1	0	0	1	1	1	1	Serine	hydrolase	(FSH1)
Peptidase_S9	PF00326.21	gi|529076944|ref|YP_008375947.1|	-	0.0032	17.0	0.1	1.3	8.5	0.0	2.4	3	0	0	3	3	3	2	Prolyl	oligopeptidase	family
PE-PPE	PF08237.11	gi|529076944|ref|YP_008375947.1|	-	0.0068	16.0	0.0	0.01	15.4	0.0	1.2	1	0	0	1	1	1	1	PE-PPE	domain
Abhydrolase_3	PF07859.13	gi|529076944|ref|YP_008375947.1|	-	0.012	15.4	0.8	0.48	10.2	0.1	2.2	1	1	1	2	2	2	0	alpha/beta	hydrolase	fold
Esterase	PF00756.20	gi|529076944|ref|YP_008375947.1|	-	0.058	13.0	0.0	0.074	12.7	0.0	1.4	1	1	0	1	1	1	0	Putative	esterase
Palm_thioest	PF02089.15	gi|529076944|ref|YP_008375947.1|	-	0.073	12.9	0.0	0.094	12.5	0.0	1.2	1	0	0	1	1	1	0	Palmitoyl	protein	thioesterase
Cutinase	PF01083.22	gi|529076944|ref|YP_008375947.1|	-	0.1	12.5	0.1	0.16	11.9	0.1	1.3	1	0	0	1	1	1	0	Cutinase
TrmB	PF01978.19	gi|529076945|ref|YP_008375948.1|	-	0.003	17.4	0.3	0.0037	17.1	0.3	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|529076945|ref|YP_008375948.1|	-	0.0031	17.0	0.0	0.0048	16.4	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.6	gi|529076945|ref|YP_008375948.1|	-	0.045	14.3	0.0	0.059	13.9	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_11	PF08279.12	gi|529076945|ref|YP_008375948.1|	-	0.059	13.3	0.0	0.08	12.9	0.0	1.2	1	0	0	1	1	1	0	HTH	domain
GntR	PF00392.21	gi|529076945|ref|YP_008375948.1|	-	0.061	13.0	0.1	0.086	12.5	0.1	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
MarR	PF01047.22	gi|529076945|ref|YP_008375948.1|	-	0.062	13.2	0.0	0.09	12.7	0.0	1.2	1	0	0	1	1	1	0	MarR	family
MarR_2	PF12802.7	gi|529076945|ref|YP_008375948.1|	-	0.11	12.4	0.0	0.18	11.7	0.0	1.4	1	1	0	1	1	1	0	MarR	family
Epimerase_2	PF02350.19	gi|529076946|ref|YP_008375949.1|	-	0.017	14.0	0.3	0.021	13.7	0.3	1.0	1	0	0	1	1	1	0	UDP-N-acetylglucosamine	2-epimerase
ABC_tran	PF00005.27	gi|529076947|ref|YP_008375950.1|	-	6.6e-37	127.1	0.0	1.9e-19	70.5	0.0	2.8	2	1	0	2	2	2	2	ABC	transporter
SMC_N	PF02463.19	gi|529076947|ref|YP_008375950.1|	-	5.2e-13	48.9	2.8	0.0012	18.3	0.0	4.2	4	0	0	4	4	4	2	RecF/RecN/SMC	N	terminal	domain
RLI	PF04068.15	gi|529076947|ref|YP_008375950.1|	-	5.1e-12	45.4	0.6	1.1e-11	44.4	0.6	1.5	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
AAA_21	PF13304.6	gi|529076947|ref|YP_008375950.1|	-	5.7e-12	46.1	0.3	0.053	13.3	0.0	4.2	4	0	0	4	4	4	4	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|529076947|ref|YP_008375950.1|	-	2e-07	31.6	0.3	0.0049	17.3	0.0	2.7	2	1	0	2	2	2	2	AAA	ATPase	domain
AAA_22	PF13401.6	gi|529076947|ref|YP_008375950.1|	-	2e-06	28.2	0.0	0.001	19.4	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
Rad17	PF03215.15	gi|529076947|ref|YP_008375950.1|	-	4.7e-06	26.6	0.0	0.13	12.2	0.0	3.1	2	1	1	3	3	3	2	Rad17	P-loop	domain
AAA	PF00004.29	gi|529076947|ref|YP_008375950.1|	-	5.5e-06	26.8	0.0	0.23	11.9	0.0	2.7	3	0	0	3	3	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
RNA_helicase	PF00910.22	gi|529076947|ref|YP_008375950.1|	-	6.7e-06	26.5	0.0	0.083	13.3	0.0	2.6	2	0	0	2	2	2	2	RNA	helicase
AAA_18	PF13238.6	gi|529076947|ref|YP_008375950.1|	-	6.8e-05	23.4	0.0	0.46	11.0	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_23	PF13476.6	gi|529076947|ref|YP_008375950.1|	-	7.3e-05	23.3	0.0	0.23	11.9	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
NACHT	PF05729.12	gi|529076947|ref|YP_008375950.1|	-	9.2e-05	22.4	0.0	0.36	10.7	0.0	2.5	2	0	0	2	2	2	2	NACHT	domain
AAA_24	PF13479.6	gi|529076947|ref|YP_008375950.1|	-	0.00014	21.6	0.0	0.082	12.6	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_33	PF13671.6	gi|529076947|ref|YP_008375950.1|	-	0.00016	21.8	0.0	0.1	12.8	0.0	2.9	3	1	0	3	3	2	1	AAA	domain
RuvB_N	PF05496.12	gi|529076947|ref|YP_008375950.1|	-	0.00022	21.0	0.1	0.45	10.2	0.0	2.8	3	0	0	3	3	3	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Fer4	PF00037.27	gi|529076947|ref|YP_008375950.1|	-	0.00058	19.6	1.3	0.00058	19.6	1.3	2.7	3	0	0	3	3	3	1	4Fe-4S	binding	domain
RsgA_GTPase	PF03193.16	gi|529076947|ref|YP_008375950.1|	-	0.0007	19.5	0.2	0.22	11.4	0.0	2.3	2	0	0	2	2	2	1	RsgA	GTPase
AAA_14	PF13173.6	gi|529076947|ref|YP_008375950.1|	-	0.0038	17.3	0.0	4.8	7.2	0.0	2.9	3	0	0	3	3	3	0	AAA	domain
Fer4_6	PF12837.7	gi|529076947|ref|YP_008375950.1|	-	0.0038	17.2	11.8	0.015	15.4	1.7	2.4	2	0	0	2	2	2	1	4Fe-4S	binding	domain
AAA_15	PF13175.6	gi|529076947|ref|YP_008375950.1|	-	0.0049	16.6	0.0	1.3	8.6	0.0	2.5	3	0	0	3	3	2	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|529076947|ref|YP_008375950.1|	-	0.0049	16.6	0.5	3.5	7.4	0.1	2.5	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
NTPase_1	PF03266.15	gi|529076947|ref|YP_008375950.1|	-	0.005	16.8	0.5	3.1	7.7	0.0	2.8	3	0	0	3	3	2	1	NTPase
AAA_5	PF07728.14	gi|529076947|ref|YP_008375950.1|	-	0.006	16.6	0.0	0.94	9.5	0.0	3.0	3	0	0	3	3	3	1	AAA	domain	(dynein-related	subfamily)
SRP54	PF00448.22	gi|529076947|ref|YP_008375950.1|	-	0.0089	15.7	0.0	2.9	7.5	0.0	2.3	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
AAA_28	PF13521.6	gi|529076947|ref|YP_008375950.1|	-	0.011	16.0	0.3	4.8	7.4	0.0	3.0	3	0	0	3	3	2	0	AAA	domain
Thymidylate_kin	PF02223.17	gi|529076947|ref|YP_008375950.1|	-	0.017	14.8	0.0	2.8	7.6	0.0	2.4	2	0	0	2	2	2	0	Thymidylate	kinase
Fer4_2	PF12797.7	gi|529076947|ref|YP_008375950.1|	-	0.017	15.2	1.0	0.017	15.2	1.0	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
SbcCD_C	PF13558.6	gi|529076947|ref|YP_008375950.1|	-	0.02	15.1	0.0	7.4	6.9	0.0	2.9	2	1	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
DUF87	PF01935.17	gi|529076947|ref|YP_008375950.1|	-	0.024	14.7	0.1	6.2	6.8	0.0	2.5	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
AAA_25	PF13481.6	gi|529076947|ref|YP_008375950.1|	-	0.033	13.7	4.4	4.1	6.9	0.0	3.6	4	0	0	4	4	4	0	AAA	domain
NB-ARC	PF00931.22	gi|529076947|ref|YP_008375950.1|	-	0.039	13.1	0.0	0.84	8.8	0.0	2.3	2	0	0	2	2	2	0	NB-ARC	domain
Cytidylate_kin	PF02224.18	gi|529076947|ref|YP_008375950.1|	-	0.059	13.1	0.1	1.7	8.3	0.0	2.4	2	0	0	2	2	2	0	Cytidylate	kinase
Fer4_10	PF13237.6	gi|529076947|ref|YP_008375950.1|	-	0.077	13.1	11.3	0.44	10.7	1.0	2.3	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|529076947|ref|YP_008375950.1|	-	0.093	12.9	8.1	0.24	11.6	8.3	1.6	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
dNK	PF01712.19	gi|529076947|ref|YP_008375950.1|	-	0.11	12.3	0.0	8.9	6.1	0.0	2.4	2	0	0	2	2	2	0	Deoxynucleoside	kinase
AAA_30	PF13604.6	gi|529076947|ref|YP_008375950.1|	-	0.14	11.9	0.1	13	5.5	0.1	2.6	2	0	0	2	2	2	0	AAA	domain
MeaB	PF03308.16	gi|529076947|ref|YP_008375950.1|	-	0.15	11.0	0.6	8.8	5.2	0.0	2.2	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
CLP1_P	PF16575.5	gi|529076947|ref|YP_008375950.1|	-	0.18	11.6	0.0	3.7	7.3	0.0	2.5	2	0	0	2	2	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
Fer4_7	PF12838.7	gi|529076947|ref|YP_008375950.1|	-	0.28	11.8	8.5	0.65	10.6	8.5	1.7	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|529076947|ref|YP_008375950.1|	-	0.81	9.9	6.5	1.8	8.8	6.5	1.6	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
PHP	PF02811.19	gi|529076948|ref|YP_008375951.1|	-	1.5e-06	28.7	0.2	2e-06	28.2	0.2	1.5	1	1	0	1	1	1	1	PHP	domain
Lactate_perm	PF02652.14	gi|529076949|ref|YP_008375952.1|	-	7e-95	318.7	26.5	3.6e-94	316.4	26.5	1.8	1	1	0	1	1	1	1	L-lactate	permease
Peptidase_M54	PF07998.11	gi|529076950|ref|YP_008375953.1|	-	7.2e-24	84.8	0.1	9.2e-24	84.5	0.1	1.2	1	0	0	1	1	1	1	Peptidase	family	M54
Peptidase_M10	PF00413.24	gi|529076950|ref|YP_008375953.1|	-	4.6e-05	23.3	0.0	4.6e-05	23.3	0.0	1.2	1	0	0	1	1	1	1	Matrixin
DUF4953	PF16313.5	gi|529076950|ref|YP_008375953.1|	-	0.00021	20.6	0.1	0.00032	20.0	0.1	1.2	1	0	0	1	1	1	1	Met-zincin
Reprolysin_4	PF13583.6	gi|529076950|ref|YP_008375953.1|	-	0.00024	20.8	0.0	0.00029	20.6	0.0	1.2	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_3	PF13582.6	gi|529076950|ref|YP_008375953.1|	-	0.00042	20.8	0.0	0.00051	20.5	0.0	1.3	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_2	PF13574.6	gi|529076950|ref|YP_008375953.1|	-	0.0034	17.3	0.0	0.0036	17.2	0.0	1.1	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_5	PF13688.6	gi|529076950|ref|YP_008375953.1|	-	0.0038	17.4	0.0	0.0043	17.2	0.0	1.2	1	0	0	1	1	1	1	Metallo-peptidase	family	M12
Peptidase_M66	PF10462.9	gi|529076950|ref|YP_008375953.1|	-	0.013	14.5	0.1	0.016	14.1	0.1	1.1	1	0	0	1	1	1	0	Peptidase	M66
Peptidase_M57	PF12388.8	gi|529076950|ref|YP_008375953.1|	-	0.025	14.2	0.1	0.053	13.1	0.0	1.5	2	0	0	2	2	2	0	Dual-action	HEIGH	metallo-peptidase
Zincin_1	PF06262.11	gi|529076950|ref|YP_008375953.1|	-	0.046	13.8	0.1	0.083	13.0	0.1	1.4	1	0	0	1	1	1	0	Zincin-like	metallopeptidase
Metallopep	PF12044.8	gi|529076950|ref|YP_008375953.1|	-	0.047	12.3	0.1	0.06	11.9	0.1	1.1	1	0	0	1	1	1	0	Putative	peptidase	family
Peptidase_M43	PF05572.13	gi|529076950|ref|YP_008375953.1|	-	0.058	13.3	0.0	0.076	12.9	0.0	1.3	1	0	0	1	1	1	0	Pregnancy-associated	plasma	protein-A
Reprolysin	PF01421.19	gi|529076950|ref|YP_008375953.1|	-	0.068	13.1	0.0	0.089	12.7	0.0	1.1	1	0	0	1	1	1	0	Reprolysin	(M12B)	family	zinc	metalloprotease
DDE_Tnp_ISAZ013	PF07592.11	gi|529076950|ref|YP_008375953.1|	-	0.15	11.0	0.0	1.5	7.7	0.0	2.0	2	0	0	2	2	2	0	Rhodopirellula	transposase	DDE	domain
HAD_2	PF13419.6	gi|529076951|ref|YP_008375954.1|	-	4.3e-06	26.9	0.0	2.5e-05	24.4	0.0	2.2	2	1	1	3	3	3	1	Haloacid	dehalogenase-like	hydrolase
B12-binding	PF02310.19	gi|529076951|ref|YP_008375954.1|	-	0.048	13.7	0.0	0.092	12.8	0.0	1.5	1	0	0	1	1	1	0	B12	binding	domain
F420_oxidored	PF03807.17	gi|529076952|ref|YP_008375955.1|	-	5e-19	68.7	0.9	7.8e-19	68.1	0.2	1.7	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
ApbA	PF02558.16	gi|529076952|ref|YP_008375955.1|	-	9.3e-06	25.4	0.0	1.2e-05	25.0	0.0	1.2	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Semialdhyde_dh	PF01118.24	gi|529076952|ref|YP_008375955.1|	-	0.00031	21.2	0.2	0.00058	20.3	0.1	1.4	1	1	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|529076952|ref|YP_008375955.1|	-	0.00034	20.6	0.0	0.00053	20.0	0.0	1.4	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Sacchrp_dh_NADP	PF03435.18	gi|529076952|ref|YP_008375955.1|	-	0.00071	19.8	0.1	0.0014	18.8	0.1	1.5	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
Shikimate_DH	PF01488.20	gi|529076952|ref|YP_008375955.1|	-	0.00086	19.4	0.0	0.0018	18.3	0.0	1.5	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
PDH	PF02153.17	gi|529076952|ref|YP_008375955.1|	-	0.028	13.4	0.1	0.04	12.9	0.1	1.2	1	0	0	1	1	1	0	Prephenate	dehydrogenase
3HCDH_N	PF02737.18	gi|529076952|ref|YP_008375955.1|	-	0.041	13.7	0.7	0.081	12.8	0.7	1.6	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
KR	PF08659.10	gi|529076952|ref|YP_008375955.1|	-	0.059	13.3	0.1	0.1	12.5	0.1	1.4	1	0	0	1	1	1	0	KR	domain
GFO_IDH_MocA	PF01408.22	gi|529076952|ref|YP_008375955.1|	-	0.077	13.8	0.1	0.16	12.8	0.1	1.5	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
DXP_reductoisom	PF02670.16	gi|529076952|ref|YP_008375955.1|	-	3.2	8.5	6.9	9.5	7.0	0.3	3.0	2	1	1	3	3	3	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
Thioredoxin	PF00085.20	gi|529076953|ref|YP_008375956.1|	-	1.1e-18	67.1	0.0	1.1e-18	67.0	0.0	1.0	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_8	PF13905.6	gi|529076953|ref|YP_008375956.1|	-	2.5e-07	30.9	0.0	0.011	16.1	0.0	2.1	1	1	1	2	2	2	2	Thioredoxin-like
Thioredoxin_2	PF13098.6	gi|529076953|ref|YP_008375956.1|	-	5.6e-07	30.0	0.2	2.5e-05	24.7	0.2	2.0	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_9	PF14595.6	gi|529076953|ref|YP_008375956.1|	-	7.3e-06	25.8	0.1	8.1e-06	25.6	0.1	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_3	PF13192.6	gi|529076953|ref|YP_008375956.1|	-	4.6e-05	23.4	0.0	5.2e-05	23.2	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin	domain
Glutaredoxin	PF00462.24	gi|529076953|ref|YP_008375956.1|	-	0.00083	19.5	0.0	0.0012	19.0	0.0	1.3	1	0	0	1	1	1	1	Glutaredoxin
DUF836	PF05768.14	gi|529076953|ref|YP_008375956.1|	-	0.0021	18.4	0.1	0.0023	18.3	0.1	1.1	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
AhpC-TSA	PF00578.21	gi|529076953|ref|YP_008375956.1|	-	0.0078	16.1	0.1	0.053	13.4	0.1	1.8	1	1	0	1	1	1	1	AhpC/TSA	family
TraF	PF13728.6	gi|529076953|ref|YP_008375956.1|	-	0.038	13.8	0.0	0.045	13.6	0.0	1.1	1	0	0	1	1	1	0	F	plasmid	transfer	operon	protein
Thioredoxin_7	PF13899.6	gi|529076953|ref|YP_008375956.1|	-	0.056	13.6	0.9	0.094	12.9	0.2	1.9	2	1	0	2	2	2	0	Thioredoxin-like
Thioredoxin_5	PF13743.6	gi|529076953|ref|YP_008375956.1|	-	0.08	12.6	0.1	0.094	12.4	0.1	1.3	1	1	0	1	1	1	0	Thioredoxin
RNA_pol_Rpb5_C	PF01191.19	gi|529076953|ref|YP_008375956.1|	-	0.093	12.6	0.0	0.13	12.2	0.0	1.2	1	0	0	1	1	1	0	RNA	polymerase	Rpb5,	C-terminal	domain
Redoxin	PF08534.10	gi|529076953|ref|YP_008375956.1|	-	0.11	12.3	0.2	1.3	8.8	0.0	1.9	1	1	1	2	2	2	0	Redoxin
DSBA	PF01323.20	gi|529076953|ref|YP_008375956.1|	-	0.11	12.3	0.0	1.9	8.2	0.0	1.9	1	1	1	2	2	2	0	DSBA-like	thioredoxin	domain
OST3_OST6	PF04756.13	gi|529076953|ref|YP_008375956.1|	-	0.18	11.1	0.0	0.18	11.1	0.0	1.1	1	0	0	1	1	1	0	OST3	/	OST6	family,	transporter	family
Sec61_beta	PF03911.16	gi|529076954|ref|YP_008375957.1|	-	4e-17	61.9	0.1	5e-17	61.7	0.1	1.1	1	0	0	1	1	1	1	Sec61beta	family
DUF402	PF04167.13	gi|529076955|ref|YP_008375958.1|	-	3.2e-15	56.1	3.8	3.2e-15	56.1	3.8	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF402)
S1	PF00575.23	gi|529076955|ref|YP_008375958.1|	-	0.0002	21.7	0.1	0.00058	20.2	0.1	1.8	1	0	0	1	1	1	1	S1	RNA	binding	domain
AIM24	PF01987.17	gi|529076956|ref|YP_008375959.1|	-	2e-62	210.6	0.0	2.3e-62	210.4	0.0	1.0	1	0	0	1	1	1	1	Mitochondrial	biogenesis	AIM24
adh_short_C2	PF13561.6	gi|529076957|ref|YP_008375960.1|	-	3e-50	170.9	0.3	8.3e-50	169.5	0.3	1.6	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|529076957|ref|YP_008375960.1|	-	5.8e-45	153.2	0.1	7.2e-45	152.9	0.1	1.0	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|529076957|ref|YP_008375960.1|	-	6.2e-11	42.5	0.1	8.6e-11	42.1	0.1	1.2	1	0	0	1	1	1	1	KR	domain
NAD_binding_10	PF13460.6	gi|529076957|ref|YP_008375960.1|	-	6.7e-05	22.9	0.8	8.9e-05	22.4	0.8	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
Epimerase	PF01370.21	gi|529076957|ref|YP_008375960.1|	-	0.00022	20.8	0.2	0.00033	20.2	0.2	1.5	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Enoyl_reductase	PF12241.8	gi|529076957|ref|YP_008375960.1|	-	0.0049	16.2	0.0	0.007	15.7	0.0	1.1	1	0	0	1	1	1	1	Trans-2-enoyl-CoA	reductase	catalytic	region
GDP_Man_Dehyd	PF16363.5	gi|529076957|ref|YP_008375960.1|	-	0.031	13.7	0.0	0.059	12.8	0.0	1.4	2	0	0	2	2	2	0	GDP-mannose	4,6	dehydratase
NmrA	PF05368.13	gi|529076957|ref|YP_008375960.1|	-	0.05	13.2	1.4	0.08	12.5	1.4	1.3	1	0	0	1	1	1	0	NmrA-like	family
Opy2	PF09463.10	gi|529076958|ref|YP_008375961.1|	-	0.01	16.2	0.5	5.8	7.3	0.0	2.2	2	0	0	2	2	2	0	Opy2	protein
zf-HYPF	PF07503.12	gi|529076958|ref|YP_008375961.1|	-	0.012	15.4	1.1	2.1	8.2	0.1	2.2	2	0	0	2	2	2	0	HypF	finger
zinc_ribbon_5	PF13719.6	gi|529076958|ref|YP_008375961.1|	-	0.71	9.7	2.9	0.96	9.3	0.1	2.3	2	1	1	3	3	3	0	zinc-ribbon	domain
BCD	PF15461.6	gi|529076959|ref|YP_008375962.1|	-	2e-76	257.0	16.7	2.8e-76	256.6	16.7	1.2	1	0	0	1	1	1	1	Beta-carotene	15,15'-dioxygenase
EcsB	PF05975.12	gi|529076959|ref|YP_008375962.1|	-	3.1	6.6	7.2	0.33	9.7	2.1	1.8	2	0	0	2	2	2	0	Bacterial	ABC	transporter	protein	EcsB
Amino_oxidase	PF01593.24	gi|529076960|ref|YP_008375963.1|	-	1.3e-29	103.9	0.1	2e-29	103.2	0.1	1.3	1	1	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|529076960|ref|YP_008375963.1|	-	2.6e-17	62.8	0.1	8.4e-17	61.2	0.1	2.0	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|529076960|ref|YP_008375963.1|	-	7e-13	48.9	11.1	2.2e-06	27.5	2.6	2.3	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|529076960|ref|YP_008375963.1|	-	6.6e-05	22.4	0.0	0.00089	18.7	0.0	2.2	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|529076960|ref|YP_008375963.1|	-	8.5e-05	21.9	3.9	0.00064	19.0	0.8	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|529076960|ref|YP_008375963.1|	-	8.8e-05	21.8	4.4	0.0001	21.5	2.9	1.8	2	0	0	2	2	2	1	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|529076960|ref|YP_008375963.1|	-	0.00044	19.6	0.9	0.00096	18.5	0.9	1.5	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox	PF00070.27	gi|529076960|ref|YP_008375963.1|	-	0.0013	19.2	0.6	0.0013	19.2	0.6	2.4	4	0	0	4	4	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|529076960|ref|YP_008375963.1|	-	0.0051	15.6	0.4	0.07	11.8	1.0	2.0	2	0	0	2	2	2	1	HI0933-like	protein
MCRA	PF06100.11	gi|529076960|ref|YP_008375963.1|	-	0.0057	15.5	0.0	0.014	14.2	0.0	1.6	2	0	0	2	2	2	1	MCRA	family
NAD_binding_7	PF13241.6	gi|529076960|ref|YP_008375963.1|	-	0.011	16.1	0.0	0.025	15.0	0.0	1.6	1	0	0	1	1	1	0	Putative	NAD(P)-binding
Thi4	PF01946.17	gi|529076960|ref|YP_008375963.1|	-	0.11	11.7	1.3	0.24	10.6	1.3	1.4	1	0	0	1	1	1	0	Thi4	family
AlaDh_PNT_C	PF01262.21	gi|529076960|ref|YP_008375963.1|	-	0.13	11.6	3.4	0.2	10.9	3.4	1.2	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
GIDA	PF01134.22	gi|529076960|ref|YP_008375963.1|	-	0.14	11.3	1.6	0.21	10.6	1.6	1.2	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
IlvN	PF07991.12	gi|529076960|ref|YP_008375963.1|	-	0.15	11.7	0.1	0.34	10.5	0.1	1.6	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
3HCDH_N	PF02737.18	gi|529076960|ref|YP_008375963.1|	-	0.4	10.6	0.8	0.68	9.8	0.8	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
BAT	PF15915.5	gi|529076961|ref|YP_008375964.1|	-	2.9e-36	124.7	12.1	2.9e-36	124.7	12.1	3.3	4	1	0	4	4	4	1	GAF	and	HTH_10	associated	domain
PAS_9	PF13426.7	gi|529076961|ref|YP_008375964.1|	-	1.2e-22	80.1	0.1	4.4e-22	78.3	0.1	2.1	2	0	0	2	2	2	1	PAS	domain
HTH_10	PF04967.12	gi|529076961|ref|YP_008375964.1|	-	6.7e-20	70.6	0.0	1.5e-19	69.5	0.0	1.7	1	0	0	1	1	1	1	HTH	DNA	binding	domain
PAS	PF00989.25	gi|529076961|ref|YP_008375964.1|	-	2.6e-11	43.5	0.0	6.1e-11	42.3	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
GAF_2	PF13185.6	gi|529076961|ref|YP_008375964.1|	-	1.5e-10	41.5	1.0	6.6e-10	39.4	1.0	2.2	1	0	0	1	1	1	1	GAF	domain
Response_reg	PF00072.24	gi|529076961|ref|YP_008375964.1|	-	6.1e-10	39.3	0.0	1.5e-09	38.0	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_4	PF08448.10	gi|529076961|ref|YP_008375964.1|	-	1.5e-09	38.1	0.1	1.2e-08	35.1	0.0	2.6	2	0	0	2	2	2	1	PAS	fold
PAS_3	PF08447.12	gi|529076961|ref|YP_008375964.1|	-	1.7e-08	34.6	0.0	4.6e-08	33.2	0.0	1.8	1	0	0	1	1	1	1	PAS	fold
GAF	PF01590.26	gi|529076961|ref|YP_008375964.1|	-	7.3e-06	26.7	0.0	2.1e-05	25.2	0.0	1.8	1	0	0	1	1	1	1	GAF	domain
GAF_3	PF13492.6	gi|529076961|ref|YP_008375964.1|	-	2.1e-05	24.9	0.2	8.3e-05	22.9	0.0	2.2	2	0	0	2	2	2	1	GAF	domain
PAS_8	PF13188.7	gi|529076961|ref|YP_008375964.1|	-	8.6e-05	22.5	0.0	0.002	18.1	0.0	2.8	2	0	0	2	2	2	1	PAS	domain
DUF1492	PF07374.11	gi|529076961|ref|YP_008375964.1|	-	0.022	14.9	0.4	2.8	8.2	0.0	2.6	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1492)
Bac_rhodopsin	PF01036.18	gi|529076963|ref|YP_008375966.1|	-	7.3e-61	205.6	14.6	8.3e-61	205.4	14.6	1.0	1	0	0	1	1	1	1	Bacteriorhodopsin-like	protein
DUF21	PF01595.20	gi|529076963|ref|YP_008375966.1|	-	0.007	16.1	3.4	0.013	15.2	3.4	1.4	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
UvrA_inter	PF17760.1	gi|529076964|ref|YP_008375967.1|	-	9.8e-32	109.3	0.0	3.4e-31	107.5	0.0	2.0	1	0	0	1	1	1	1	UvrA	interaction	domain
UvrA_DNA-bind	PF17755.1	gi|529076964|ref|YP_008375967.1|	-	5.9e-29	100.6	0.2	1.8e-27	95.9	0.1	2.8	3	0	0	3	3	2	1	UvrA	DNA-binding	domain
ABC_tran	PF00005.27	gi|529076964|ref|YP_008375967.1|	-	1.3e-20	74.3	0.0	3.9e-10	40.4	0.0	4.3	3	2	0	3	3	3	3	ABC	transporter
SMC_N	PF02463.19	gi|529076964|ref|YP_008375967.1|	-	9.3e-12	44.9	0.0	0.064	12.7	0.1	4.1	3	1	0	3	3	3	3	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|529076964|ref|YP_008375967.1|	-	4.4e-09	35.9	0.1	0.00092	18.9	0.0	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|529076964|ref|YP_008375967.1|	-	6e-07	30.0	0.1	0.013	15.9	0.0	3.3	4	0	0	4	4	3	2	AAA	ATPase	domain
AAA_15	PF13175.6	gi|529076964|ref|YP_008375967.1|	-	6.9e-06	26.0	0.0	0.025	14.3	0.0	3.8	4	0	0	4	4	4	1	AAA	ATPase	domain
AAA_21	PF13304.6	gi|529076964|ref|YP_008375967.1|	-	7e-06	26.1	8.8	0.013	15.3	0.1	4.3	4	0	0	4	4	4	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|529076964|ref|YP_008375967.1|	-	1.8e-05	25.4	0.0	0.019	15.5	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|529076964|ref|YP_008375967.1|	-	2.4e-05	24.6	0.1	0.1	12.9	0.0	3.2	3	0	0	3	3	3	2	AAA	domain
DnaJ_CXXCXGXG	PF00684.19	gi|529076964|ref|YP_008375967.1|	-	4.2e-05	23.8	11.0	0.008	16.5	1.0	3.8	4	0	0	4	4	3	1	DnaJ	central	domain
ATPase	PF06745.13	gi|529076964|ref|YP_008375967.1|	-	5.6e-05	22.6	0.0	0.043	13.1	0.0	3.1	3	0	0	3	3	3	1	KaiC
AAA_25	PF13481.6	gi|529076964|ref|YP_008375967.1|	-	7.6e-05	22.4	0.0	0.73	9.4	0.0	3.1	3	0	0	3	3	3	2	AAA	domain
RsgA_GTPase	PF03193.16	gi|529076964|ref|YP_008375967.1|	-	9.5e-05	22.4	0.1	0.58	10.0	0.0	2.3	2	0	0	2	2	2	2	RsgA	GTPase
Zn-ribbon_8	PF09723.10	gi|529076964|ref|YP_008375967.1|	-	0.00041	20.4	15.4	0.77	9.9	0.6	4.5	4	0	0	4	4	4	2	Zinc	ribbon	domain
AAA_33	PF13671.6	gi|529076964|ref|YP_008375967.1|	-	0.0028	17.8	0.0	3.5	7.8	0.0	3.2	3	0	0	3	3	2	1	AAA	domain
AAA_14	PF13173.6	gi|529076964|ref|YP_008375967.1|	-	0.005	16.9	0.0	2.1	8.4	0.0	2.9	3	0	0	3	3	2	1	AAA	domain
AAA_18	PF13238.6	gi|529076964|ref|YP_008375967.1|	-	0.0074	16.8	0.4	2.5	8.7	0.0	2.8	2	0	0	2	2	2	1	AAA	domain
cobW	PF02492.19	gi|529076964|ref|YP_008375967.1|	-	0.0077	15.8	0.1	0.99	9.0	0.0	2.4	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
APS_kinase	PF01583.20	gi|529076964|ref|YP_008375967.1|	-	0.013	15.3	0.1	8.4	6.3	0.0	2.6	2	0	0	2	2	2	0	Adenylylsulphate	kinase
RNA_helicase	PF00910.22	gi|529076964|ref|YP_008375967.1|	-	0.014	15.8	0.0	0.41	11.1	0.0	2.3	2	0	0	2	2	2	0	RNA	helicase
NACHT	PF05729.12	gi|529076964|ref|YP_008375967.1|	-	0.018	14.9	0.0	1.2	9.0	0.0	2.4	2	0	0	2	2	2	0	NACHT	domain
DUF2075	PF09848.9	gi|529076964|ref|YP_008375967.1|	-	0.024	13.9	0.1	6.4	5.9	0.0	2.3	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
Viral_helicase1	PF01443.18	gi|529076964|ref|YP_008375967.1|	-	0.056	13.2	0.0	1.5	8.5	0.0	2.3	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
DZR	PF12773.7	gi|529076964|ref|YP_008375967.1|	-	0.066	13.2	8.7	5.3	7.2	0.3	4.1	4	0	0	4	4	4	0	Double	zinc	ribbon
AAA_30	PF13604.6	gi|529076964|ref|YP_008375967.1|	-	0.087	12.5	0.0	4.7	6.9	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
Zn_Tnp_IS91	PF14319.6	gi|529076964|ref|YP_008375967.1|	-	0.14	12.2	4.7	1.6	8.8	0.0	3.3	4	0	0	4	4	4	0	Transposase	zinc-binding	domain
AAA_24	PF13479.6	gi|529076964|ref|YP_008375967.1|	-	0.24	11.1	0.6	12	5.5	0.0	3.3	4	0	0	4	4	3	0	AAA	domain
NMDAR2_C	PF10565.9	gi|529076964|ref|YP_008375967.1|	-	0.25	10.2	0.0	0.41	9.5	0.0	1.2	1	0	0	1	1	1	0	N-methyl	D-aspartate	receptor	2B3	C-terminus
PhoU	PF01895.19	gi|529076965|ref|YP_008375968.1|	-	3.3e-17	62.7	7.4	2.6e-13	50.2	0.2	2.3	2	0	0	2	2	2	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|529076965|ref|YP_008375968.1|	-	1.3e-05	25.0	0.0	2.4e-05	24.2	0.0	1.5	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
UPF0113	PF03657.13	gi|529076965|ref|YP_008375968.1|	-	0.027	14.8	0.0	0.059	13.6	0.0	1.5	1	0	0	1	1	1	0	UPF0113	PUA	domain
Aldo_ket_red	PF00248.21	gi|529076966|ref|YP_008375969.1|	-	1.4e-58	198.4	0.0	3e-45	154.7	0.0	2.0	1	1	1	2	2	2	2	Aldo/keto	reductase	family
Radical_SAM	PF04055.21	gi|529076966|ref|YP_008375969.1|	-	0.06	13.7	0.0	1.9	8.8	0.0	2.3	2	0	0	2	2	2	0	Radical	SAM	superfamily
HTH_23	PF13384.6	gi|529076966|ref|YP_008375969.1|	-	0.11	12.3	0.0	0.33	10.8	0.0	1.8	1	0	0	1	1	1	0	Homeodomain-like	domain
HSP70	PF00012.20	gi|529076967|ref|YP_008375970.1|	-	8.5e-243	806.9	17.4	8.2e-241	800.4	17.4	2.0	1	1	0	1	1	1	1	Hsp70	protein
MreB_Mbl	PF06723.13	gi|529076967|ref|YP_008375970.1|	-	6.7e-19	67.9	0.1	6.7e-19	67.9	0.1	2.2	2	1	0	2	2	2	1	MreB/Mbl	protein
FGGY_C	PF02782.16	gi|529076967|ref|YP_008375970.1|	-	0.00028	20.7	0.0	0.00091	19.0	0.0	1.8	2	0	0	2	2	2	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
FIVAR	PF07554.13	gi|529076967|ref|YP_008375970.1|	-	0.0052	17.5	3.9	0.028	15.2	3.9	2.4	1	0	0	1	1	1	1	FIVAR	domain
StbA	PF06406.11	gi|529076967|ref|YP_008375970.1|	-	0.029	13.6	0.1	0.33	10.1	0.0	2.4	2	1	1	3	3	3	0	StbA	protein
DUF2570	PF10828.8	gi|529076967|ref|YP_008375970.1|	-	3.1	7.6	6.1	24	4.8	0.0	3.3	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF2570)
GrpE	PF01025.19	gi|529076968|ref|YP_008375971.1|	-	3.7e-40	137.3	11.9	8.1e-40	136.2	11.9	1.6	1	1	0	1	1	1	1	GrpE
DUF641	PF04859.12	gi|529076968|ref|YP_008375971.1|	-	0.00049	20.4	5.2	0.00049	20.4	5.2	1.8	2	0	0	2	2	1	1	Plant	protein	of	unknown	function	(DUF641)
Exonuc_VII_L	PF02601.15	gi|529076968|ref|YP_008375971.1|	-	0.0017	18.0	3.5	0.0019	17.9	3.5	1.1	1	0	0	1	1	1	1	Exonuclease	VII,	large	subunit
Spc7	PF08317.11	gi|529076968|ref|YP_008375971.1|	-	0.0027	16.6	17.8	0.0031	16.4	17.1	1.4	1	1	0	1	1	1	1	Spc7	kinetochore	protein
SPATA24	PF15175.6	gi|529076968|ref|YP_008375971.1|	-	0.0027	17.6	12.4	0.0037	17.2	12.4	1.1	1	0	0	1	1	1	1	Spermatogenesis-associated	protein	24
Troponin	PF00992.20	gi|529076968|ref|YP_008375971.1|	-	0.0062	16.8	16.3	0.011	16.1	16.3	1.3	1	0	0	1	1	1	1	Troponin
Atg14	PF10186.9	gi|529076968|ref|YP_008375971.1|	-	0.013	14.6	9.0	0.016	14.3	9.0	1.1	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
FAM76	PF16046.5	gi|529076968|ref|YP_008375971.1|	-	0.016	14.6	7.5	0.02	14.3	7.5	1.1	1	0	0	1	1	1	0	FAM76	protein
AAA_13	PF13166.6	gi|529076968|ref|YP_008375971.1|	-	0.03	13.0	5.6	0.035	12.8	5.6	1.2	1	0	0	1	1	1	0	AAA	domain
PKcGMP_CC	PF16808.5	gi|529076968|ref|YP_008375971.1|	-	0.035	14.0	3.3	0.035	14.0	3.3	3.2	3	1	1	4	4	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
DUF812	PF05667.11	gi|529076968|ref|YP_008375971.1|	-	0.043	12.7	11.9	0.054	12.4	11.9	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
DUF4795	PF16043.5	gi|529076968|ref|YP_008375971.1|	-	0.078	12.6	15.0	0.13	11.8	15.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4795)
Fez1	PF06818.15	gi|529076968|ref|YP_008375971.1|	-	0.085	13.3	14.4	0.14	12.6	14.1	1.5	1	1	0	1	1	1	0	Fez1
Peptidase_M32	PF02074.15	gi|529076968|ref|YP_008375971.1|	-	0.088	11.6	6.2	0.12	11.2	6.2	1.1	1	0	0	1	1	1	0	Carboxypeptidase	Taq	(M32)	metallopeptidase
VitD-bind_III	PF09164.10	gi|529076968|ref|YP_008375971.1|	-	0.098	12.7	1.3	0.22	11.5	1.3	1.6	1	0	0	1	1	1	0	Vitamin	D	binding	protein,	domain	III
DUF4602	PF15375.6	gi|529076968|ref|YP_008375971.1|	-	0.11	12.8	6.8	0.19	12.0	6.8	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4602)
Bacillus_HBL	PF05791.11	gi|529076968|ref|YP_008375971.1|	-	0.11	12.3	4.3	2.5	7.9	0.9	2.2	1	1	1	2	2	2	0	Bacillus	haemolytic	enterotoxin	(HBL)
DUF327	PF03885.13	gi|529076968|ref|YP_008375971.1|	-	0.15	12.0	9.5	0.051	13.5	4.9	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF327)
HIP1_clath_bdg	PF16515.5	gi|529076968|ref|YP_008375971.1|	-	0.18	12.4	19.5	1.1	9.9	8.9	2.8	1	1	1	2	2	2	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
DotU	PF09850.9	gi|529076968|ref|YP_008375971.1|	-	0.2	11.3	0.2	0.2	11.3	0.2	2.4	1	1	2	3	3	3	0	Type	VI	secretion	system	protein	DotU
TMPIT	PF07851.13	gi|529076968|ref|YP_008375971.1|	-	0.22	10.8	4.0	0.27	10.5	4.0	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
DUF5063	PF16702.5	gi|529076968|ref|YP_008375971.1|	-	0.25	11.7	5.8	0.4	11.1	5.8	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5063)
XLF	PF09302.11	gi|529076968|ref|YP_008375971.1|	-	0.32	11.1	3.7	0.21	11.8	1.5	1.7	1	1	1	2	2	2	0	XLF-Cernunnos,	XRcc4-like	factor,	NHEJ	component
Miga	PF10265.9	gi|529076968|ref|YP_008375971.1|	-	0.41	9.6	6.7	0.52	9.2	6.7	1.1	1	0	0	1	1	1	0	Mitoguardin
SlyX	PF04102.12	gi|529076968|ref|YP_008375971.1|	-	0.49	11.1	15.1	4.5	8.0	12.2	3.3	1	1	1	2	2	2	0	SlyX
DLP_helical	PF18709.1	gi|529076968|ref|YP_008375971.1|	-	0.54	9.4	9.1	0.72	9.0	9.1	1.2	1	0	0	1	1	1	0	Dynamin-like	helical	domain
CMS1	PF14617.6	gi|529076968|ref|YP_008375971.1|	-	0.55	9.5	10.8	0.12	11.7	6.4	1.8	1	1	1	2	2	2	0	U3-containing	90S	pre-ribosomal	complex	subunit
DUF1542	PF07564.11	gi|529076968|ref|YP_008375971.1|	-	0.73	10.0	8.9	2.8	8.1	0.2	2.9	1	1	0	2	2	2	0	Domain	of	Unknown	Function	(DUF1542)
AcylCoA_dehyd_C	PF12186.8	gi|529076968|ref|YP_008375971.1|	-	0.82	9.8	5.6	5.4	7.2	1.2	2.8	3	0	0	3	3	3	0	Acyl-CoA	dehydrogenase	C	terminal
Metallophos_3	PF14582.6	gi|529076968|ref|YP_008375971.1|	-	0.94	8.7	5.7	1.6	8.0	5.7	1.3	1	0	0	1	1	1	0	Metallophosphoesterase,	calcineurin	superfamily
Lip_prot_lig_C	PF10437.9	gi|529076968|ref|YP_008375971.1|	-	0.95	9.5	3.2	1.9	8.5	1.0	2.3	1	1	1	2	2	2	0	Bacterial	lipoate	protein	ligase	C-terminus
Baculo_PEP_C	PF04513.12	gi|529076968|ref|YP_008375971.1|	-	0.96	9.5	4.4	7.2	6.7	4.2	2.1	1	1	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
FUSC	PF04632.12	gi|529076968|ref|YP_008375971.1|	-	1.4	7.4	9.1	1.8	7.0	9.1	1.1	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
GAT	PF03127.14	gi|529076968|ref|YP_008375971.1|	-	1.4	9.3	9.6	6.1	7.2	9.6	2.1	1	1	0	1	1	1	0	GAT	domain
DUF5082	PF16888.5	gi|529076968|ref|YP_008375971.1|	-	1.6	9.0	11.8	1	9.7	7.8	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF5082)
UPF0242	PF06785.11	gi|529076968|ref|YP_008375971.1|	-	1.7	8.7	19.6	2.2	8.3	19.0	1.4	1	1	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Malate_DH	PF12434.8	gi|529076968|ref|YP_008375971.1|	-	1.9	8.6	8.0	0.14	12.2	1.4	2.6	3	0	0	3	3	1	0	Malate	dehydrogenase	enzyme
LMBR1	PF04791.16	gi|529076968|ref|YP_008375971.1|	-	2.1	7.2	4.8	2.5	6.9	4.8	1.1	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
DUF3552	PF12072.8	gi|529076968|ref|YP_008375971.1|	-	2.1	7.7	22.3	1.3	8.4	19.9	1.7	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3552)
DUF4404	PF14357.6	gi|529076968|ref|YP_008375971.1|	-	2.2	9.0	16.5	2.9	8.6	1.4	2.7	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4404)
FlxA	PF14282.6	gi|529076968|ref|YP_008375971.1|	-	2.6	8.1	9.9	17	5.5	9.9	2.2	1	1	0	1	1	1	0	FlxA-like	protein
Peptidase_S49_N	PF08496.10	gi|529076968|ref|YP_008375971.1|	-	3.2	7.8	9.0	2.8	8.0	7.3	1.8	2	0	0	2	2	2	0	Peptidase	family	S49	N-terminal
BshC	PF10079.9	gi|529076968|ref|YP_008375971.1|	-	3.5	6.2	10.0	4.9	5.8	10.0	1.1	1	0	0	1	1	1	0	Bacillithiol	biosynthesis	BshC
OmpH	PF03938.14	gi|529076968|ref|YP_008375971.1|	-	3.6	7.9	19.0	9.3	6.6	19.0	1.8	1	1	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
V_ATPase_I	PF01496.19	gi|529076968|ref|YP_008375971.1|	-	5.7	4.7	4.5	6.6	4.5	4.5	1.2	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
DUF4407	PF14362.6	gi|529076968|ref|YP_008375971.1|	-	7.1	5.9	19.1	7.1	5.9	18.7	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
TMF_DNA_bd	PF12329.8	gi|529076968|ref|YP_008375971.1|	-	7.2	6.7	21.9	0.51	10.4	13.4	2.7	2	1	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
DUF572	PF04502.13	gi|529076968|ref|YP_008375971.1|	-	8.4	5.9	17.3	9.6	5.7	17.3	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF572)
ResIII	PF04851.15	gi|529076969|ref|YP_008375972.1|	-	2.4e-24	86.2	0.0	2.3e-23	83.1	0.0	2.1	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
ERCC3_RAD25_C	PF16203.5	gi|529076969|ref|YP_008375972.1|	-	4e-19	68.8	0.0	5.5e-19	68.4	0.0	1.1	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
XPB_DRD	PF18458.1	gi|529076969|ref|YP_008375972.1|	-	1.2e-18	66.7	2.1	3.8e-18	65.1	1.2	2.4	2	0	0	2	2	2	1	Xeroderma	pigmentosum	group	B	helicase	damage	recognition	domain
Helicase_C	PF00271.31	gi|529076969|ref|YP_008375972.1|	-	1.2e-14	54.6	0.0	8.3e-14	51.9	0.0	2.2	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|529076969|ref|YP_008375972.1|	-	4.4e-08	33.1	0.0	7.9e-07	29.0	0.0	2.6	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C_2	PF13307.6	gi|529076969|ref|YP_008375972.1|	-	0.0036	17.5	0.0	0.67	10.1	0.0	2.6	3	0	0	3	3	3	1	Helicase	C-terminal	domain
DUF3443	PF11925.8	gi|529076971|ref|YP_008375974.1|	-	0.18	10.6	0.0	0.22	10.3	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3443)
DUF790	PF05626.11	gi|529076973|ref|YP_008375976.1|	-	8.9e-136	452.6	0.0	1.3e-135	452.1	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF790)
Methyltranf_PUA	PF13636.6	gi|529076974|ref|YP_008375977.1|	-	1.7e-13	50.3	0.0	2.9e-13	49.6	0.0	1.4	1	0	0	1	1	1	1	RNA-binding	PUA-like	domain	of	methyltransferase	RsmF
HTH_33	PF13592.6	gi|529076974|ref|YP_008375977.1|	-	0.02	14.5	0.0	1.9	8.2	0.0	2.4	2	0	0	2	2	2	0	Winged	helix-turn	helix
DUF3606	PF12244.8	gi|529076974|ref|YP_008375977.1|	-	0.14	12.1	0.2	2	8.4	0.0	2.5	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3606)
Methyltr_RsmB-F	PF01189.17	gi|529076975|ref|YP_008375978.1|	-	9.8e-50	169.0	0.0	1.2e-49	168.7	0.0	1.1	1	0	0	1	1	1	1	16S	rRNA	methyltransferase	RsmB/F
Methyltr_RsmF_N	PF17125.5	gi|529076975|ref|YP_008375978.1|	-	1.5e-06	28.6	0.0	6e-06	26.7	0.0	1.9	2	1	0	2	2	2	1	N-terminal	domain	of	16S	rRNA	methyltransferase	RsmF
Methyltransf_31	PF13847.6	gi|529076975|ref|YP_008375978.1|	-	1.7e-06	27.9	0.0	2.5e-06	27.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
FtsJ	PF01728.19	gi|529076975|ref|YP_008375978.1|	-	0.00018	21.7	0.0	0.00051	20.2	0.0	1.7	1	1	1	2	2	2	1	FtsJ-like	methyltransferase
PCMT	PF01135.19	gi|529076975|ref|YP_008375978.1|	-	0.12	12.1	0.0	2.2	7.9	0.0	2.1	2	0	0	2	2	2	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
PAC2	PF09754.9	gi|529076976|ref|YP_008375979.1|	-	4.4e-37	128.2	0.0	5.2e-37	127.9	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
APG6_N	PF17675.1	gi|529076976|ref|YP_008375979.1|	-	0.01	16.4	0.8	0.014	15.9	0.8	1.2	1	0	0	1	1	1	0	Apg6	coiled-coil	region
kleA_kleC	PF17383.2	gi|529076976|ref|YP_008375979.1|	-	0.044	14.1	0.8	0.084	13.2	0.8	1.4	1	0	0	1	1	1	0	Uncharacterized	KorC	regulated	protein	A
ZapB	PF06005.12	gi|529076976|ref|YP_008375979.1|	-	0.073	13.5	2.5	0.11	13.0	2.5	1.2	1	0	0	1	1	1	0	Cell	division	protein	ZapB
LysE	PF01810.18	gi|529076977|ref|YP_008375980.1|	-	4.8e-22	78.4	7.8	6.8e-20	71.4	7.8	2.1	1	1	0	1	1	1	1	LysE	type	translocator
DUF2583	PF10762.9	gi|529076977|ref|YP_008375980.1|	-	5.8	7.4	5.7	2.5	8.6	0.3	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2583)
HD	PF01966.22	gi|529076978|ref|YP_008375981.1|	-	2.3e-15	56.9	1.5	2.3e-15	56.9	1.5	1.5	2	0	0	2	2	2	1	HD	domain
Acetyltransf_1	PF00583.25	gi|529076979|ref|YP_008375982.1|	-	3.7e-10	40.1	0.0	5.9e-10	39.4	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|529076979|ref|YP_008375982.1|	-	3.4e-08	33.5	0.0	9.6e-08	32.0	0.0	1.7	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|529076979|ref|YP_008375982.1|	-	2.2e-06	28.0	0.0	5.3e-06	26.8	0.0	1.6	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|529076979|ref|YP_008375982.1|	-	5.2e-05	23.3	0.0	0.00012	22.2	0.0	1.6	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|529076979|ref|YP_008375982.1|	-	0.00073	19.6	0.0	0.0013	18.8	0.0	1.5	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
FR47	PF08445.10	gi|529076979|ref|YP_008375982.1|	-	0.0041	17.1	0.0	0.008	16.1	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Zn-ribbon_8	PF09723.10	gi|529076979|ref|YP_008375982.1|	-	0.0095	16.0	1.5	0.019	15.1	1.5	1.4	1	0	0	1	1	1	1	Zinc	ribbon	domain
Acetyltransf_4	PF13420.7	gi|529076979|ref|YP_008375982.1|	-	0.015	15.4	0.0	0.036	14.2	0.0	1.6	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
DZR	PF12773.7	gi|529076979|ref|YP_008375982.1|	-	0.045	13.8	0.4	0.074	13.1	0.4	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
RNA_POL_M_15KD	PF02150.16	gi|529076979|ref|YP_008375982.1|	-	0.13	12.1	1.8	3.2	7.7	0.2	2.4	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf-ribbon_3	PF13248.6	gi|529076979|ref|YP_008375982.1|	-	0.16	11.4	1.4	6.3	6.4	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
GFO_IDH_MocA	PF01408.22	gi|529076980|ref|YP_008375983.1|	-	1.6e-19	70.9	0.1	4.6e-19	69.4	0.0	1.8	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|529076980|ref|YP_008375983.1|	-	0.0082	16.1	0.0	0.014	15.4	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
DJ-1_PfpI	PF01965.24	gi|529076982|ref|YP_008375985.1|	-	2.4e-52	177.1	0.0	2.9e-52	176.8	0.0	1.1	1	0	0	1	1	1	1	DJ-1/PfpI	family
GATase	PF00117.28	gi|529076982|ref|YP_008375985.1|	-	3.8e-06	26.8	0.0	4.7e-06	26.5	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Catalase_C	PF18011.1	gi|529076982|ref|YP_008375985.1|	-	0.0022	17.6	0.0	0.0032	17.1	0.0	1.4	1	1	0	1	1	1	1	C-terminal	domain	found	in	long	catalases
GATase_3	PF07685.14	gi|529076982|ref|YP_008375985.1|	-	0.0078	15.8	0.0	0.01	15.4	0.0	1.3	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
Peptidase_C26	PF07722.13	gi|529076982|ref|YP_008375985.1|	-	0.069	12.9	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	Peptidase	C26
Glyco_trans_4_4	PF13579.6	gi|529076982|ref|YP_008375985.1|	-	0.086	13.3	1.0	0.31	11.5	0.2	2.1	1	1	1	2	2	2	0	Glycosyl	transferase	4-like	domain
GATase_5	PF13507.6	gi|529076982|ref|YP_008375985.1|	-	0.15	11.1	0.0	0.21	10.6	0.0	1.3	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
ABC_tran	PF00005.27	gi|529076984|ref|YP_008375987.1|	-	3e-24	86.1	0.0	3.9e-24	85.7	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529076984|ref|YP_008375987.1|	-	1.8e-10	41.1	1.5	3.3e-05	23.8	0.1	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|529076984|ref|YP_008375987.1|	-	0.0022	18.5	0.8	0.0037	17.8	0.2	1.5	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|529076984|ref|YP_008375987.1|	-	0.0027	18.1	0.4	0.0072	16.7	0.4	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_15	PF13175.6	gi|529076984|ref|YP_008375987.1|	-	0.0069	16.1	0.2	1.8	8.2	0.1	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_22	PF13401.6	gi|529076984|ref|YP_008375987.1|	-	0.04	14.2	0.1	0.17	12.1	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|529076984|ref|YP_008375987.1|	-	0.099	12.4	0.2	0.19	11.5	0.2	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|529076984|ref|YP_008375987.1|	-	0.13	12.0	0.0	0.23	11.2	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|529076984|ref|YP_008375987.1|	-	0.19	12.0	2.0	1.2	9.3	0.3	2.4	2	1	0	2	2	2	0	AAA	domain
TrkA_N	PF02254.18	gi|529076985|ref|YP_008375988.1|	-	2.6e-46	156.7	4.8	3.2e-23	82.2	0.7	3.4	3	1	0	3	3	3	2	TrkA-N	domain
TrkA_C	PF02080.21	gi|529076985|ref|YP_008375988.1|	-	1.7e-29	101.5	0.9	2.6e-14	52.8	0.1	3.0	2	0	0	2	2	2	2	TrkA-C	domain
Ion_trans_2	PF07885.16	gi|529076985|ref|YP_008375988.1|	-	0.001	19.0	7.0	0.0026	17.7	7.0	1.6	1	0	0	1	1	1	1	Ion	channel
RMMBL	PF07521.12	gi|529076985|ref|YP_008375988.1|	-	0.007	16.3	0.0	0.53	10.3	0.0	2.5	2	0	0	2	2	2	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
2-Hacid_dh_C	PF02826.19	gi|529076985|ref|YP_008375988.1|	-	0.012	15.0	0.0	0.028	13.8	0.0	1.6	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|529076985|ref|YP_008375988.1|	-	0.046	14.2	1.5	0.24	11.8	0.1	2.8	2	1	1	3	3	3	0	Putative	NAD(P)-binding
bPH_2	PF03703.14	gi|529076986|ref|YP_008375989.1|	-	7.7e-48	160.6	8.8	9.4e-23	80.2	0.8	3.3	3	0	0	3	3	3	3	Bacterial	PH	domain
bPH_4	PF06713.11	gi|529076986|ref|YP_008375989.1|	-	0.0023	18.0	0.0	0.083	13.0	0.0	2.7	3	0	0	3	3	3	1	Bacterial	PH	domain
NuDC	PF16273.5	gi|529076986|ref|YP_008375989.1|	-	0.18	12.3	3.4	0.16	12.5	1.2	1.8	2	0	0	2	2	2	0	Nuclear	distribution	C	domain
bPH_2	PF03703.14	gi|529076987|ref|YP_008375990.1|	-	4.4e-18	65.3	0.1	6.1e-18	64.8	0.1	1.2	1	0	0	1	1	1	1	Bacterial	PH	domain
Pyr_redox_2	PF07992.14	gi|529076988|ref|YP_008375991.1|	-	2.8e-17	62.9	3.7	1.5e-10	40.8	2.8	2.1	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|529076988|ref|YP_008375991.1|	-	1.8e-12	47.1	0.1	3.4e-08	33.1	0.0	2.5	2	1	1	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|529076988|ref|YP_008375991.1|	-	1.6e-10	40.3	0.1	0.00035	19.4	0.0	2.1	2	0	0	2	2	2	2	HI0933-like	protein
DAO	PF01266.24	gi|529076988|ref|YP_008375991.1|	-	9.9e-10	38.5	0.3	1.1e-05	25.2	0.0	2.2	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|529076988|ref|YP_008375991.1|	-	5.9e-06	25.6	0.8	5.5e-05	22.4	0.1	2.1	1	1	1	2	2	2	1	FAD	binding	domain
NAD_binding_9	PF13454.6	gi|529076988|ref|YP_008375991.1|	-	1.3e-05	25.3	0.1	0.00084	19.4	0.1	2.3	2	0	0	2	2	2	1	FAD-NAD(P)-binding
FAD_binding_3	PF01494.19	gi|529076988|ref|YP_008375991.1|	-	1.7e-05	24.3	2.7	0.023	14.0	0.0	2.2	1	1	1	2	2	2	2	FAD	binding	domain
GIDA	PF01134.22	gi|529076988|ref|YP_008375991.1|	-	3.9e-05	22.9	0.2	0.0019	17.3	0.0	2.2	1	1	1	2	2	2	1	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|529076988|ref|YP_008375991.1|	-	6.3e-05	22.3	0.0	0.00013	21.3	0.0	1.4	1	0	0	1	1	1	1	Thi4	family
FAD_oxidored	PF12831.7	gi|529076988|ref|YP_008375991.1|	-	0.00018	21.0	0.6	0.00052	19.5	0.1	1.9	1	1	1	2	2	2	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|529076988|ref|YP_008375991.1|	-	0.0027	17.9	0.0	0.0069	16.6	0.0	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
AlaDh_PNT_C	PF01262.21	gi|529076988|ref|YP_008375991.1|	-	0.0083	15.4	0.7	0.011	15.0	0.0	1.6	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
K_oxygenase	PF13434.6	gi|529076988|ref|YP_008375991.1|	-	0.0096	15.1	0.1	2.7	7.1	0.0	2.1	1	1	1	2	2	2	2	L-lysine	6-monooxygenase	(NADPH-requiring)
Amino_oxidase	PF01593.24	gi|529076988|ref|YP_008375991.1|	-	0.015	14.6	0.0	0.02	14.2	0.0	1.2	1	0	0	1	1	1	0	Flavin	containing	amine	oxidoreductase
Lycopene_cycl	PF05834.12	gi|529076988|ref|YP_008375991.1|	-	0.051	12.6	0.3	0.18	10.9	0.1	1.8	1	1	1	2	2	2	0	Lycopene	cyclase	protein
Pyr_redox	PF00070.27	gi|529076988|ref|YP_008375991.1|	-	0.059	13.9	0.4	0.78	10.3	0.4	2.3	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.14	gi|529076988|ref|YP_008375991.1|	-	0.071	12.0	1.5	4.1	6.1	0.5	2.1	2	0	0	2	2	2	0	Tryptophan	halogenase
TIM	PF00121.18	gi|529076989|ref|YP_008375992.1|	-	4.5e-06	26.2	0.0	5.4e-06	25.9	0.0	1.1	1	0	0	1	1	1	1	Triosephosphate	isomerase
ThiG	PF05690.14	gi|529076989|ref|YP_008375992.1|	-	3.1e-05	23.4	2.6	0.00036	19.9	1.2	2.3	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
FMN_dh	PF01070.18	gi|529076989|ref|YP_008375992.1|	-	0.00042	19.5	1.5	0.00099	18.2	1.5	1.5	1	0	0	1	1	1	1	FMN-dependent	dehydrogenase
IGPS	PF00218.21	gi|529076989|ref|YP_008375992.1|	-	0.0041	16.3	0.0	0.0075	15.5	0.0	1.5	1	1	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
Hydrolase_like	PF13242.6	gi|529076989|ref|YP_008375992.1|	-	0.048	13.7	0.4	0.17	12.0	0.2	2.1	2	0	0	2	2	2	0	HAD-hyrolase-like
ComA	PF02679.15	gi|529076989|ref|YP_008375992.1|	-	0.092	12.2	0.1	0.17	11.4	0.1	1.4	2	0	0	2	2	2	0	(2R)-phospho-3-sulfolactate	synthase	(ComA)
Gly_rich_SFCGS	PF14272.6	gi|529076989|ref|YP_008375992.1|	-	0.23	11.5	0.1	0.23	11.5	0.1	1.9	2	0	0	2	2	2	0	Glycine-rich	SFCGS
NMO	PF03060.15	gi|529076989|ref|YP_008375992.1|	-	1	8.6	9.5	0.44	9.9	5.9	1.9	1	1	1	2	2	2	0	Nitronate	monooxygenase
Response_reg	PF00072.24	gi|529076990|ref|YP_008375993.1|	-	4.3e-19	68.7	0.8	7.5e-19	68.0	0.8	1.4	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HalX	PF08663.10	gi|529076990|ref|YP_008375993.1|	-	1.7e-12	47.5	5.8	3.9e-12	46.3	5.8	1.7	1	0	0	1	1	1	1	HalX	domain
LemA	PF04011.12	gi|529076990|ref|YP_008375993.1|	-	0.0011	18.8	0.8	0.0017	18.2	0.8	1.3	1	0	0	1	1	1	1	LemA	family
TRAF_BIRC3_bd	PF16673.5	gi|529076990|ref|YP_008375993.1|	-	0.045	13.5	2.5	0.092	12.6	0.4	2.3	1	1	1	2	2	2	0	TNF	receptor-associated	factor	BIRC3	binding	domain
bZIP_2	PF07716.15	gi|529076990|ref|YP_008375993.1|	-	0.066	13.3	0.7	0.066	13.3	0.7	2.0	1	1	1	2	2	2	0	Basic	region	leucine	zipper
DUF4407	PF14362.6	gi|529076990|ref|YP_008375993.1|	-	0.25	10.6	2.0	0.35	10.2	2.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
DivIC	PF04977.15	gi|529076990|ref|YP_008375993.1|	-	1.4	8.7	5.3	0.72	9.7	0.6	2.2	2	0	0	2	2	2	0	Septum	formation	initiator
HTH_3	PF01381.22	gi|529076991|ref|YP_008375994.1|	-	1.3e-10	41.2	0.0	1.6e-10	40.9	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|529076991|ref|YP_008375994.1|	-	7.1e-10	39.1	0.1	9.4e-10	38.7	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|529076991|ref|YP_008375994.1|	-	4e-07	29.9	0.1	6.1e-07	29.4	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.6	gi|529076991|ref|YP_008375994.1|	-	2.6e-05	24.0	0.3	3.7e-05	23.5	0.3	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
FadA	PF09403.10	gi|529076991|ref|YP_008375994.1|	-	0.073	13.6	0.0	0.12	12.9	0.0	1.2	1	0	0	1	1	1	0	Adhesion	protein	FadA
CDP-OH_P_transf	PF01066.21	gi|529076993|ref|YP_008375996.1|	-	1.6e-08	35.2	1.5	1.6e-08	35.2	1.5	2.3	2	1	0	2	2	2	1	CDP-alcohol	phosphatidyltransferase
7TMR-DISM_7TM	PF07695.11	gi|529076993|ref|YP_008375996.1|	-	0.026	14.4	4.8	0.051	13.5	0.2	2.3	2	1	0	2	2	2	0	7TM	diverse	intracellular	signalling
DUF4051	PF13260.6	gi|529076993|ref|YP_008375996.1|	-	0.089	12.5	0.9	0.26	11.0	0.9	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4051)
DUF1118	PF06549.12	gi|529076993|ref|YP_008375996.1|	-	0.17	12.2	1.1	1.3	9.3	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1118)
MerE	PF05052.12	gi|529076993|ref|YP_008375996.1|	-	0.34	10.9	5.0	0.17	11.8	1.1	2.4	2	1	0	2	2	2	0	MerE	protein
AAA_18	PF13238.6	gi|529076994|ref|YP_008375997.1|	-	3.8e-19	69.5	0.1	5e-19	69.1	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|529076994|ref|YP_008375997.1|	-	1.4e-08	35.1	0.7	0.00049	20.3	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_17	PF13207.6	gi|529076994|ref|YP_008375997.1|	-	1.6e-06	28.6	1.0	0.015	15.8	0.1	2.3	1	1	1	2	2	2	2	AAA	domain
AAA_28	PF13521.6	gi|529076994|ref|YP_008375997.1|	-	1.4e-05	25.4	2.3	0.00016	22.0	0.4	2.1	1	1	1	2	2	2	1	AAA	domain
dNK	PF01712.19	gi|529076994|ref|YP_008375997.1|	-	4.7e-05	23.3	0.3	0.042	13.7	0.0	2.1	1	1	1	2	2	2	2	Deoxynucleoside	kinase
ADK	PF00406.22	gi|529076994|ref|YP_008375997.1|	-	0.00074	19.7	0.1	0.48	10.5	0.0	2.2	2	0	0	2	2	2	2	Adenylate	kinase
AAA	PF00004.29	gi|529076994|ref|YP_008375997.1|	-	0.03	14.8	0.1	0.089	13.2	0.0	1.8	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NTPase_1	PF03266.15	gi|529076994|ref|YP_008375997.1|	-	0.033	14.1	0.6	0.057	13.3	0.6	1.6	1	1	0	1	1	1	0	NTPase
AAA_24	PF13479.6	gi|529076994|ref|YP_008375997.1|	-	0.04	13.6	0.0	0.067	12.9	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
CoaE	PF01121.20	gi|529076994|ref|YP_008375997.1|	-	0.047	13.4	0.8	4.9	6.8	0.0	2.2	2	0	0	2	2	2	0	Dephospho-CoA	kinase
MeaB	PF03308.16	gi|529076994|ref|YP_008375997.1|	-	0.1	11.6	0.5	0.22	10.5	0.2	1.6	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
ATPase	PF06745.13	gi|529076994|ref|YP_008375997.1|	-	0.1	11.9	0.9	0.68	9.2	0.1	2.1	2	0	0	2	2	2	0	KaiC
AAA_22	PF13401.6	gi|529076994|ref|YP_008375997.1|	-	0.11	12.8	0.3	0.15	12.3	0.3	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_19	PF13245.6	gi|529076994|ref|YP_008375997.1|	-	0.14	12.5	0.2	0.28	11.5	0.1	1.6	2	0	0	2	2	2	0	AAA	domain
Aminotran_1_2	PF00155.21	gi|529076995|ref|YP_008375998.1|	-	7.4e-61	206.3	0.0	8.4e-61	206.1	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Cys_Met_Meta_PP	PF01053.20	gi|529076995|ref|YP_008375998.1|	-	0.0013	17.3	0.0	0.0021	16.7	0.0	1.3	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
LysR_substrate	PF03466.20	gi|529076995|ref|YP_008375998.1|	-	0.051	12.9	0.2	0.98	8.7	0.1	2.8	2	1	1	3	3	3	0	LysR	substrate	binding	domain
Alliinase_C	PF04864.13	gi|529076995|ref|YP_008375998.1|	-	0.2	10.5	0.0	0.3	9.9	0.0	1.2	1	0	0	1	1	1	0	Allinase
AAA	PF00004.29	gi|529076996|ref|YP_008375999.1|	-	2.4e-44	151.0	0.1	2.4e-44	151.0	0.1	2.4	3	0	0	3	3	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|529076996|ref|YP_008375999.1|	-	6.5e-12	45.1	1.8	1.7e-11	43.7	1.8	1.7	1	0	0	1	1	1	1	AAA+	lid	domain
AAA_2	PF07724.14	gi|529076996|ref|YP_008375999.1|	-	8.4e-08	32.5	0.0	8.4e-08	32.5	0.0	2.3	3	1	0	3	3	2	1	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|529076996|ref|YP_008375999.1|	-	3.7e-07	30.0	0.0	1.1e-06	28.5	0.0	1.7	2	0	0	2	2	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|529076996|ref|YP_008375999.1|	-	3.5e-06	27.5	4.1	0.00023	21.6	0.0	3.1	2	2	1	3	3	3	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|529076996|ref|YP_008375999.1|	-	1.3e-05	25.5	2.7	0.00027	21.2	0.5	2.8	2	1	0	2	2	1	1	AAA	domain
AAA_5	PF07728.14	gi|529076996|ref|YP_008375999.1|	-	2.8e-05	24.1	2.5	9.9e-05	22.4	0.3	2.8	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
Prot_ATP_ID_OB	PF16450.5	gi|529076996|ref|YP_008375999.1|	-	0.00013	21.9	1.1	0.00027	20.8	0.3	2.0	2	0	0	2	2	1	1	Proteasomal	ATPase	OB	C-terminal	domain
AAA_17	PF13207.6	gi|529076996|ref|YP_008375999.1|	-	0.00051	20.5	8.9	0.062	13.7	0.1	2.9	2	1	0	2	2	2	2	AAA	domain
AAA_33	PF13671.6	gi|529076996|ref|YP_008375999.1|	-	0.0006	20.0	0.8	0.0021	18.2	0.0	2.3	2	1	0	2	2	2	1	AAA	domain
AAA_18	PF13238.6	gi|529076996|ref|YP_008375999.1|	-	0.0012	19.4	1.2	0.015	15.9	0.0	2.6	2	1	0	2	2	2	1	AAA	domain
AAA_14	PF13173.6	gi|529076996|ref|YP_008375999.1|	-	0.0012	18.9	0.3	0.0045	17.0	0.0	2.0	2	1	0	2	2	2	1	AAA	domain
Mg_chelatase	PF01078.21	gi|529076996|ref|YP_008375999.1|	-	0.0017	17.8	0.3	0.0076	15.7	0.2	2.0	1	1	1	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
NACHT	PF05729.12	gi|529076996|ref|YP_008375999.1|	-	0.0018	18.3	0.3	0.05	13.5	0.0	2.5	1	1	1	2	2	2	1	NACHT	domain
GrpE	PF01025.19	gi|529076996|ref|YP_008375999.1|	-	0.0021	17.8	11.8	0.0066	16.1	11.6	2.0	1	1	0	1	1	1	1	GrpE
TIP49	PF06068.13	gi|529076996|ref|YP_008375999.1|	-	0.0025	17.1	3.6	0.0029	16.8	0.0	2.5	2	2	1	3	3	3	1	TIP49	P-loop	domain
Sigma54_activat	PF00158.26	gi|529076996|ref|YP_008375999.1|	-	0.0025	17.5	0.8	0.045	13.5	0.2	2.8	2	1	0	2	2	1	1	Sigma-54	interaction	domain
DUF2334	PF10096.9	gi|529076996|ref|YP_008375999.1|	-	0.0034	17.1	0.1	0.007	16.1	0.1	1.5	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2334)
Atg14	PF10186.9	gi|529076996|ref|YP_008375999.1|	-	0.0037	16.4	1.3	0.005	16.0	1.3	1.3	1	0	0	1	1	1	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
IstB_IS21	PF01695.17	gi|529076996|ref|YP_008375999.1|	-	0.0049	16.6	0.0	0.012	15.3	0.0	1.7	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
DUF815	PF05673.13	gi|529076996|ref|YP_008375999.1|	-	0.0065	15.7	0.0	0.015	14.4	0.0	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
TniB	PF05621.11	gi|529076996|ref|YP_008375999.1|	-	0.0065	15.9	0.0	1.8	7.9	0.0	2.6	1	1	1	2	2	2	1	Bacterial	TniB	protein
AAA_3	PF07726.11	gi|529076996|ref|YP_008375999.1|	-	0.0074	16.2	0.6	0.028	14.3	0.0	2.3	2	2	1	3	3	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_28	PF13521.6	gi|529076996|ref|YP_008375999.1|	-	0.0085	16.3	0.7	0.022	15.0	0.1	2.2	2	1	0	2	2	2	1	AAA	domain
AAA_7	PF12775.7	gi|529076996|ref|YP_008375999.1|	-	0.01	15.4	1.2	0.069	12.6	0.0	2.3	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
CPT	PF07931.12	gi|529076996|ref|YP_008375999.1|	-	0.01	15.7	0.1	0.023	14.5	0.0	1.7	2	0	0	2	2	1	0	Chloramphenicol	phosphotransferase-like	protein
Torsin	PF06309.11	gi|529076996|ref|YP_008375999.1|	-	0.013	15.6	0.1	0.059	13.5	0.0	2.0	2	0	0	2	2	2	0	Torsin
NB-ARC	PF00931.22	gi|529076996|ref|YP_008375999.1|	-	0.014	14.6	0.1	0.071	12.3	0.0	2.2	2	1	0	2	2	2	0	NB-ARC	domain
TsaE	PF02367.17	gi|529076996|ref|YP_008375999.1|	-	0.018	15.0	0.0	0.042	13.9	0.0	1.6	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
RNA_helicase	PF00910.22	gi|529076996|ref|YP_008375999.1|	-	0.021	15.2	0.0	0.052	13.9	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
Sigma54_activ_2	PF14532.6	gi|529076996|ref|YP_008375999.1|	-	0.025	14.7	0.1	0.089	12.9	0.0	2.0	2	0	0	2	2	1	0	Sigma-54	interaction	domain
AAA_30	PF13604.6	gi|529076996|ref|YP_008375999.1|	-	0.028	14.1	0.2	0.094	12.4	0.2	1.9	1	1	0	1	1	1	0	AAA	domain
DUF4438	PF14505.6	gi|529076996|ref|YP_008375999.1|	-	0.03	13.3	0.1	0.05	12.6	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4438)
ATPase	PF06745.13	gi|529076996|ref|YP_008375999.1|	-	0.041	13.2	7.9	0.36	10.2	0.0	3.3	2	1	1	3	3	3	0	KaiC
Takusan	PF04822.13	gi|529076996|ref|YP_008375999.1|	-	0.056	13.3	6.5	0.15	11.9	6.5	1.7	1	0	0	1	1	1	0	Takusan
AAA_11	PF13086.6	gi|529076996|ref|YP_008375999.1|	-	0.073	12.8	0.1	0.073	12.8	0.1	2.4	1	1	1	2	2	2	0	AAA	domain
AAA_24	PF13479.6	gi|529076996|ref|YP_008375999.1|	-	0.085	12.6	0.1	0.085	12.6	0.1	2.8	3	2	0	3	3	3	0	AAA	domain
Cep57_CLD_2	PF14197.6	gi|529076996|ref|YP_008375999.1|	-	0.094	12.8	9.4	0.27	11.4	9.4	1.7	1	0	0	1	1	1	0	Centrosome	localisation	domain	of	PPC89
TUDOR	PF00567.24	gi|529076996|ref|YP_008375999.1|	-	0.12	12.4	1.6	0.18	11.9	0.1	2.0	2	0	0	2	2	2	0	Tudor	domain
AAA_25	PF13481.6	gi|529076996|ref|YP_008375999.1|	-	0.15	11.6	5.9	0.68	9.5	0.1	3.3	2	1	0	3	3	3	0	AAA	domain
GAS	PF13851.6	gi|529076996|ref|YP_008375999.1|	-	0.16	11.3	16.3	0.36	10.1	16.3	1.6	1	1	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
DUF724	PF05266.14	gi|529076996|ref|YP_008375999.1|	-	0.28	11.0	6.4	0.14	12.0	3.4	2.0	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF724)
ATG16	PF08614.11	gi|529076996|ref|YP_008375999.1|	-	0.32	11.2	15.4	0.27	11.5	11.9	2.2	2	0	0	2	2	2	0	Autophagy	protein	16	(ATG16)
ABC_tran	PF00005.27	gi|529076996|ref|YP_008375999.1|	-	0.36	11.3	0.0	0.36	11.3	0.0	2.8	2	2	0	2	2	1	0	ABC	transporter
DUF4337	PF14235.6	gi|529076996|ref|YP_008375999.1|	-	0.68	10.0	3.7	1.4	9.1	3.7	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4337)
SKA1	PF07160.12	gi|529076996|ref|YP_008375999.1|	-	0.92	9.3	10.3	5.2	6.9	9.6	2.1	1	1	1	2	2	2	0	Spindle	and	kinetochore-associated	protein	1
bZIP_1	PF00170.21	gi|529076996|ref|YP_008375999.1|	-	0.94	9.6	20.6	0.25	11.5	7.7	2.9	2	1	1	3	3	2	0	bZIP	transcription	factor
AAA_13	PF13166.6	gi|529076996|ref|YP_008375999.1|	-	1.9	7.0	10.7	86	1.6	12.1	2.2	2	1	0	2	2	2	0	AAA	domain
ABC_tran_CTD	PF16326.5	gi|529076996|ref|YP_008375999.1|	-	3.2	8.0	15.0	1.1	9.5	10.5	2.5	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
SlyX	PF04102.12	gi|529076996|ref|YP_008375999.1|	-	4	8.1	9.4	7.2	7.3	7.7	2.4	1	1	1	2	2	1	0	SlyX
HTH_24	PF13412.6	gi|529076997|ref|YP_008376000.1|	-	2.2e-05	23.9	0.0	3.1e-05	23.5	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|529076997|ref|YP_008376000.1|	-	0.001	18.9	0.1	0.0015	18.4	0.1	1.3	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|529076997|ref|YP_008376000.1|	-	0.0047	16.8	0.0	0.0064	16.4	0.0	1.2	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|529076997|ref|YP_008376000.1|	-	0.0052	16.7	0.1	0.0069	16.2	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|529076997|ref|YP_008376000.1|	-	0.0081	16.0	0.0	0.011	15.6	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|529076997|ref|YP_008376000.1|	-	0.011	15.7	0.0	0.016	15.3	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
TFIIE_alpha	PF02002.17	gi|529076997|ref|YP_008376000.1|	-	0.016	15.1	0.0	0.019	14.8	0.0	1.1	1	0	0	1	1	1	0	TFIIE	alpha	subunit
GntR	PF00392.21	gi|529076997|ref|YP_008376000.1|	-	0.06	13.0	0.3	0.087	12.5	0.2	1.4	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_9	PF08221.11	gi|529076997|ref|YP_008376000.1|	-	0.16	12.0	0.0	0.22	11.7	0.0	1.2	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_43	PF09904.9	gi|529076997|ref|YP_008376000.1|	-	0.18	11.8	0.0	0.21	11.5	0.0	1.1	1	0	0	1	1	1	0	Winged	helix-turn	helix
Metallophos_2	PF12850.7	gi|529076998|ref|YP_008376001.1|	-	1.7e-11	44.6	0.1	4e-11	43.4	0.1	1.6	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|529076998|ref|YP_008376001.1|	-	8.6e-11	42.7	1.4	1.4e-10	42.0	1.4	1.4	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
AAA_23	PF13476.6	gi|529076999|ref|YP_008376002.1|	-	1.2e-20	74.9	7.9	1.2e-20	74.9	7.9	7.3	1	1	1	2	2	1	1	AAA	domain
AAA_15	PF13175.6	gi|529076999|ref|YP_008376002.1|	-	1.6e-10	41.3	15.5	1.9e-08	34.4	0.0	4.6	2	1	0	4	4	4	2	AAA	ATPase	domain
SMC_N	PF02463.19	gi|529076999|ref|YP_008376002.1|	-	1.6e-09	37.5	51.6	2.9e-08	33.4	51.6	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
Spc7	PF08317.11	gi|529076999|ref|YP_008376002.1|	-	1.6e-08	33.8	102.0	0.001	18.0	16.8	5.8	1	1	2	4	4	4	4	Spc7	kinetochore	protein
AAA_13	PF13166.6	gi|529076999|ref|YP_008376002.1|	-	2.5e-06	26.5	61.5	0.0046	15.7	0.5	5.6	2	1	3	5	5	5	4	AAA	domain
AAA_29	PF13555.6	gi|529076999|ref|YP_008376002.1|	-	6e-06	25.9	0.0	1.1e-05	25.1	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Baculo_PEP_C	PF04513.12	gi|529076999|ref|YP_008376002.1|	-	1.1e-05	25.5	13.1	0.037	14.1	0.2	4.9	3	1	2	6	6	6	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
AAA_27	PF13514.6	gi|529076999|ref|YP_008376002.1|	-	3.1e-05	23.7	0.0	3.1e-05	23.7	0.0	5.3	5	1	1	6	6	6	1	AAA	domain
AAA_21	PF13304.6	gi|529076999|ref|YP_008376002.1|	-	4.9e-05	23.3	24.2	0.021	14.6	0.0	4.2	3	2	0	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF3584	PF12128.8	gi|529076999|ref|YP_008376002.1|	-	0.0002	19.1	104.4	0.00038	18.1	48.3	4.0	2	1	2	4	4	4	2	Protein	of	unknown	function	(DUF3584)
HOOK	PF05622.12	gi|529076999|ref|YP_008376002.1|	-	0.00028	19.2	36.9	0.00028	19.2	36.9	3.4	1	1	2	3	3	3	1	HOOK	protein
Atg14	PF10186.9	gi|529076999|ref|YP_008376002.1|	-	0.00038	19.7	72.9	0.27	10.3	12.7	5.7	1	1	2	4	4	4	2	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF1664	PF07889.12	gi|529076999|ref|YP_008376002.1|	-	0.00085	19.4	39.9	0.014	15.4	0.7	6.6	2	2	5	8	8	8	3	Protein	of	unknown	function	(DUF1664)
GAS	PF13851.6	gi|529076999|ref|YP_008376002.1|	-	0.0011	18.3	82.6	0.0044	16.4	21.9	5.4	2	2	3	5	5	5	3	Growth-arrest	specific	micro-tubule	binding
SbcCD_C	PF13558.6	gi|529076999|ref|YP_008376002.1|	-	0.0013	18.9	0.0	0.0042	17.3	0.0	1.9	1	0	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
NPV_P10	PF05531.12	gi|529076999|ref|YP_008376002.1|	-	0.0018	18.7	21.4	1.8	9.1	0.2	7.1	4	2	2	6	6	6	2	Nucleopolyhedrovirus	P10	protein
Alanine_zipper	PF11839.8	gi|529076999|ref|YP_008376002.1|	-	0.0062	16.9	8.0	0.0062	16.9	8.0	6.5	6	2	0	6	6	6	1	Alanine-zipper,	major	outer	membrane	lipoprotein
DUF724	PF05266.14	gi|529076999|ref|YP_008376002.1|	-	0.0097	15.7	11.4	0.0097	15.7	11.4	5.9	2	2	4	6	6	6	2	Protein	of	unknown	function	(DUF724)
TMPIT	PF07851.13	gi|529076999|ref|YP_008376002.1|	-	0.015	14.6	1.1	0.015	14.6	1.1	5.7	1	1	5	7	7	7	0	TMPIT-like	protein
Prefoldin	PF02996.17	gi|529076999|ref|YP_008376002.1|	-	0.018	14.9	1.0	0.018	14.9	1.0	9.5	5	3	6	11	11	11	0	Prefoldin	subunit
Laminin_II	PF06009.12	gi|529076999|ref|YP_008376002.1|	-	0.028	14.4	41.8	0.023	14.7	6.2	6.0	2	1	4	6	6	6	0	Laminin	Domain	II
TPR_MLP1_2	PF07926.12	gi|529076999|ref|YP_008376002.1|	-	0.079	13.0	109.0	0.33	11.0	17.0	8.6	1	1	5	7	7	7	0	TPR/MLP1/MLP2-like	protein
DUF745	PF05335.13	gi|529076999|ref|YP_008376002.1|	-	0.088	12.5	54.3	0.053	13.2	9.7	5.7	2	1	2	5	5	5	0	Protein	of	unknown	function	(DUF745)
DUF948	PF06103.11	gi|529076999|ref|YP_008376002.1|	-	0.15	12.3	20.5	1.8	8.9	0.1	6.8	5	3	0	5	5	4	0	Bacterial	protein	of	unknown	function	(DUF948)
ABC_tran	PF00005.27	gi|529076999|ref|YP_008376002.1|	-	0.22	12.0	0.0	0.22	12.0	0.0	4.7	2	1	0	2	2	1	0	ABC	transporter
MukB	PF04310.12	gi|529076999|ref|YP_008376002.1|	-	0.29	10.9	5.2	1.7	8.4	0.0	3.6	3	1	0	3	3	2	0	MukB	N-terminal
DUF4201	PF13870.6	gi|529076999|ref|YP_008376002.1|	-	0.35	10.6	82.4	0.32	10.7	12.6	6.9	3	2	3	6	6	6	0	Domain	of	unknown	function	(DUF4201)
Phage_GP20	PF06810.11	gi|529076999|ref|YP_008376002.1|	-	0.35	10.7	62.7	0.079	12.8	9.4	7.3	2	2	5	8	8	8	0	Phage	minor	structural	protein	GP20
FapA	PF03961.13	gi|529076999|ref|YP_008376002.1|	-	0.38	9.3	59.4	0.2	10.2	3.6	5.5	1	1	5	6	6	6	0	Flagellar	Assembly	Protein	A
AAA_22	PF13401.6	gi|529076999|ref|YP_008376002.1|	-	0.76	10.0	0.0	0.76	10.0	0.0	4.8	3	3	0	4	4	3	0	AAA	domain
BLOC1_2	PF10046.9	gi|529076999|ref|YP_008376002.1|	-	1.2	9.5	50.7	0.83	10.0	3.3	8.5	4	2	6	10	10	10	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
MscS_porin	PF12795.7	gi|529076999|ref|YP_008376002.1|	-	1.4	8.4	88.9	0.6	9.6	15.6	4.8	2	2	1	4	4	4	0	Mechanosensitive	ion	channel	porin	domain
FliD_N	PF02465.18	gi|529076999|ref|YP_008376002.1|	-	1.9	9.3	10.8	22	5.8	0.4	4.9	4	2	0	4	4	4	0	Flagellar	hook-associated	protein	2	N-terminus
IFT57	PF10498.9	gi|529076999|ref|YP_008376002.1|	-	2.1	7.2	63.5	0.024	13.6	6.5	5.8	1	1	3	5	5	5	0	Intra-flagellar	transport	protein	57
MAD	PF05557.13	gi|529076999|ref|YP_008376002.1|	-	6.9	4.9	91.6	2.7	6.2	29.6	3.3	1	1	1	3	3	3	0	Mitotic	checkpoint	protein
EzrA	PF06160.12	gi|529076999|ref|YP_008376002.1|	-	7.1	4.7	70.3	1.9	6.6	11.2	4.6	1	1	1	3	3	3	0	Septation	ring	formation	regulator,	EzrA
RPW8	PF05659.11	gi|529076999|ref|YP_008376002.1|	-	8.4	6.1	31.8	0.63	9.7	0.4	6.8	5	2	2	7	7	7	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Exonuc_VII_L	PF02601.15	gi|529076999|ref|YP_008376002.1|	-	8.8	5.8	56.9	0.77	9.3	5.7	4.2	1	1	2	4	4	4	0	Exonuclease	VII,	large	subunit
MarR_2	PF12802.7	gi|529077000|ref|YP_008376003.1|	-	0.00011	22.0	0.3	0.00021	21.1	0.3	1.5	1	0	0	1	1	1	1	MarR	family
Vault	PF01505.18	gi|529077000|ref|YP_008376003.1|	-	0.0069	16.5	0.7	0.067	13.4	0.1	2.4	2	0	0	2	2	2	1	Major	Vault	Protein	repeat	domain
HTH_20	PF12840.7	gi|529077000|ref|YP_008376003.1|	-	0.031	14.3	1.3	0.06	13.4	1.3	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Metal_resist	PF13801.6	gi|529077001|ref|YP_008376004.1|	-	0.065	13.4	1.0	0.14	12.4	0.8	1.5	1	1	0	1	1	1	0	Heavy-metal	resistance
DUF202	PF02656.15	gi|529077001|ref|YP_008376004.1|	-	0.082	13.4	1.4	0.11	12.9	1.4	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
DNA_pol_B	PF00136.21	gi|529077003|ref|YP_008376006.1|	-	5.1e-41	140.9	0.0	5.5e-25	88.0	0.0	2.2	2	0	0	2	2	2	2	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.19	gi|529077003|ref|YP_008376006.1|	-	4.3e-27	95.2	0.0	1e-26	93.9	0.0	1.7	1	1	0	1	1	1	1	DNA	polymerase	family	B,	exonuclease	domain
Hint_2	PF13403.6	gi|529077003|ref|YP_008376006.1|	-	3.9e-05	24.0	0.0	0.00035	20.9	0.0	2.2	1	1	0	1	1	1	1	Hint	domain
Hint	PF01079.20	gi|529077003|ref|YP_008376006.1|	-	0.00013	21.6	0.0	0.00023	20.7	0.0	1.3	1	0	0	1	1	1	1	Hint	module
Intein_splicing	PF14890.6	gi|529077003|ref|YP_008376006.1|	-	0.00014	21.8	0.0	0.0034	17.3	0.0	3.1	3	1	0	3	3	3	1	Intein	splicing	domain
LAGLIDADG_3	PF14528.6	gi|529077003|ref|YP_008376006.1|	-	0.00039	20.7	0.1	0.0011	19.2	0.1	1.8	1	0	0	1	1	1	1	LAGLIDADG-like	domain
PT-HINT	PF07591.11	gi|529077003|ref|YP_008376006.1|	-	0.007	16.6	0.0	0.054	13.7	0.0	2.2	2	0	0	2	2	2	1	Pretoxin	HINT	domain
DUF382	PF04037.13	gi|529077003|ref|YP_008376006.1|	-	0.16	12.1	0.8	0.93	9.7	0.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF382)
ABC_tran	PF00005.27	gi|529077004|ref|YP_008376007.1|	-	4.5e-16	59.6	0.0	1.6e-15	57.9	0.0	1.8	1	1	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|529077004|ref|YP_008376007.1|	-	4.1e-06	26.4	0.9	0.019	14.4	0.1	2.3	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|529077004|ref|YP_008376007.1|	-	6.6e-05	22.9	0.0	0.016	15.1	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA	PF00004.29	gi|529077004|ref|YP_008376007.1|	-	0.0002	21.8	0.0	0.099	13.1	0.0	2.3	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.14	gi|529077004|ref|YP_008376007.1|	-	0.002	18.1	0.1	1.2	9.2	0.0	2.5	2	0	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_29	PF13555.6	gi|529077004|ref|YP_008376007.1|	-	0.0054	16.5	0.1	0.01	15.6	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Zeta_toxin	PF06414.12	gi|529077004|ref|YP_008376007.1|	-	0.028	13.7	0.0	0.053	12.8	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA_23	PF13476.6	gi|529077004|ref|YP_008376007.1|	-	0.033	14.7	1.5	0.39	11.2	0.1	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|529077004|ref|YP_008376007.1|	-	0.06	13.6	1.0	1.1	9.5	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
AAA_24	PF13479.6	gi|529077004|ref|YP_008376007.1|	-	0.088	12.5	0.0	0.18	11.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_27	PF13514.6	gi|529077004|ref|YP_008376007.1|	-	0.099	12.2	0.1	0.27	10.8	0.1	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|529077004|ref|YP_008376007.1|	-	0.12	12.6	0.0	0.16	12.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|529077004|ref|YP_008376007.1|	-	0.13	12.0	0.1	0.32	10.7	0.1	1.6	2	0	0	2	2	2	0	AAA	domain
Rad17	PF03215.15	gi|529077004|ref|YP_008376007.1|	-	0.2	11.5	0.0	0.35	10.8	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
Phe_tRNA-synt_N	PF02912.18	gi|529077004|ref|YP_008376007.1|	-	3.5	7.6	5.8	1	9.3	1.5	2.3	3	0	0	3	3	3	0	Aminoacyl	tRNA	synthetase	class	II,	N-terminal	domain
UPF0051	PF01458.17	gi|529077005|ref|YP_008376008.1|	-	3.4e-72	242.7	0.7	4.4e-72	242.3	0.7	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
TBCA	PF02970.16	gi|529077005|ref|YP_008376008.1|	-	0.83	10.0	3.4	0.55	10.6	0.6	2.0	2	0	0	2	2	2	0	Tubulin	binding	cofactor	A
UPF0051	PF01458.17	gi|529077006|ref|YP_008376009.1|	-	2.7e-65	220.1	1.2	3.3e-65	219.8	1.2	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
Not3	PF04065.15	gi|529077007|ref|YP_008376010.1|	-	0.058	12.8	1.0	0.087	12.2	0.8	1.3	1	1	0	1	1	1	0	Not1	N-terminal	domain,	CCR4-Not	complex	component
DUF4226	PF10774.9	gi|529077007|ref|YP_008376010.1|	-	0.68	10.2	4.9	0.61	10.4	2.1	2.1	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4226)
FUSC	PF04632.12	gi|529077007|ref|YP_008376010.1|	-	0.83	8.1	2.7	0.99	7.9	2.7	1.2	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
DUF1843	PF08898.10	gi|529077007|ref|YP_008376010.1|	-	1.7	9.2	6.4	2.6	8.6	0.2	3.2	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF1843)
Fe_dep_repress	PF01325.19	gi|529077008|ref|YP_008376011.1|	-	6.7e-18	64.6	0.0	1.1e-17	64.0	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Fe_dep_repr_C	PF02742.15	gi|529077008|ref|YP_008376011.1|	-	1.8e-12	47.2	0.0	5.1e-12	45.7	0.0	1.7	2	0	0	2	2	2	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
MarR_2	PF12802.7	gi|529077008|ref|YP_008376011.1|	-	3.1e-05	23.8	0.0	7e-05	22.6	0.0	1.6	2	0	0	2	2	2	1	MarR	family
HTH_Crp_2	PF13545.6	gi|529077008|ref|YP_008376011.1|	-	7.4e-05	22.6	0.0	0.00017	21.5	0.0	1.6	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.6	gi|529077008|ref|YP_008376011.1|	-	0.00015	22.2	0.1	0.002	18.6	0.0	2.3	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|529077008|ref|YP_008376011.1|	-	0.00017	21.1	0.0	0.00029	20.3	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|529077008|ref|YP_008376011.1|	-	0.00043	20.1	0.0	0.00064	19.5	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|529077008|ref|YP_008376011.1|	-	0.00076	19.4	0.0	0.0011	18.8	0.0	1.3	1	0	0	1	1	1	1	MarR	family
Rrf2	PF02082.20	gi|529077008|ref|YP_008376011.1|	-	0.0048	17.2	0.0	0.0072	16.6	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_20	PF12840.7	gi|529077008|ref|YP_008376011.1|	-	0.0087	16.1	0.0	0.019	15.0	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|529077008|ref|YP_008376011.1|	-	0.011	15.6	0.0	0.025	14.4	0.0	1.6	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|529077008|ref|YP_008376011.1|	-	0.065	13.0	0.0	0.12	12.2	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_1	PF00126.27	gi|529077008|ref|YP_008376011.1|	-	0.1	12.6	0.0	0.29	11.1	0.0	1.8	2	1	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
N6_Mtase	PF02384.16	gi|529077009|ref|YP_008376012.1|	-	2.1e-103	345.9	0.0	2.9e-103	345.4	0.0	1.2	1	0	0	1	1	1	1	N-6	DNA	Methylase
HsdM_N	PF12161.8	gi|529077009|ref|YP_008376012.1|	-	1.1e-30	107.1	1.3	1.1e-30	107.1	1.3	2.3	2	1	1	3	3	3	1	HsdM	N-terminal	domain
UPF0020	PF01170.18	gi|529077009|ref|YP_008376012.1|	-	0.0058	16.3	0.0	0.013	15.1	0.0	1.6	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
AviRa	PF11599.8	gi|529077009|ref|YP_008376012.1|	-	0.02	14.3	0.0	0.051	13.0	0.0	1.7	1	0	0	1	1	1	0	RRNA	methyltransferase	AviRa
Nnf1	PF03980.14	gi|529077009|ref|YP_008376012.1|	-	3.5	8.0	7.6	4	7.9	1.0	3.1	2	1	0	2	2	2	0	Nnf1
Methylase_S	PF01420.19	gi|529077010|ref|YP_008376013.1|	-	5.9e-42	143.7	0.1	4e-21	76.0	0.1	2.1	2	0	0	2	2	2	2	Type	I	restriction	modification	DNA	specificity	domain
FtsK_gamma	PF09397.10	gi|529077011|ref|YP_008376014.1|	-	0.0046	16.7	0.3	0.01	15.6	0.1	1.6	1	1	1	2	2	2	1	Ftsk	gamma	domain
SWI2_SNF2	PF18766.1	gi|529077012|ref|YP_008376015.1|	-	1.9e-81	273.0	0.3	4.5e-81	271.8	0.3	1.7	1	0	0	1	1	1	1	SWI2/SNF2	ATPase
HSDR_N	PF04313.14	gi|529077012|ref|YP_008376015.1|	-	1.4e-36	126.2	0.7	1.4e-36	126.2	0.7	2.4	3	0	0	3	3	3	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
DUF3387	PF11867.8	gi|529077012|ref|YP_008376015.1|	-	3.5e-26	92.4	7.9	7.8e-26	91.2	7.9	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3387)
ResIII	PF04851.15	gi|529077012|ref|YP_008376015.1|	-	1.6e-20	73.8	0.4	3.4e-20	72.7	0.0	1.8	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|529077012|ref|YP_008376015.1|	-	0.0045	16.8	0.0	0.014	15.2	0.0	1.9	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
DUF2075	PF09848.9	gi|529077012|ref|YP_008376015.1|	-	0.014	14.6	0.1	0.057	12.6	0.0	2.1	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
DUF45	PF01863.17	gi|529077013|ref|YP_008376016.1|	-	1e-44	153.1	0.0	1.2e-44	152.9	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF45
WLM	PF08325.10	gi|529077013|ref|YP_008376016.1|	-	0.0034	17.5	0.0	0.0057	16.7	0.0	1.3	1	0	0	1	1	1	1	WLM	domain
CSD	PF00313.22	gi|529077014|ref|YP_008376017.1|	-	3.2e-17	62.1	0.5	4.6e-17	61.6	0.5	1.3	1	1	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
Rho_RNA_bind	PF07497.12	gi|529077014|ref|YP_008376017.1|	-	0.0069	16.2	0.0	0.0072	16.2	0.0	1.0	1	0	0	1	1	1	1	Rho	termination	factor,	RNA-binding	domain
UPF0236	PF06782.11	gi|529077015|ref|YP_008376018.1|	-	2.3e-06	26.5	0.0	0.00018	20.3	0.0	2.2	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|529077015|ref|YP_008376018.1|	-	0.0028	16.6	0.3	2.8	6.7	0.1	2.8	2	2	0	2	2	2	2	Transposase,	Mutator	family
DDE_Tnp_IS66	PF03050.14	gi|529077015|ref|YP_008376018.1|	-	0.0032	17.0	0.1	0.0046	16.5	0.1	1.2	1	0	0	1	1	1	1	Transposase	IS66	family
NfeD	PF01957.18	gi|529077016|ref|YP_008376019.1|	-	3.5e-07	30.5	0.1	3.5e-07	30.5	0.1	1.7	2	0	0	2	2	2	1	NfeD-like	C-terminal,	partner-binding
DUF308	PF03729.13	gi|529077016|ref|YP_008376019.1|	-	0.032	14.5	8.9	0.032	14.5	8.9	2.1	2	0	0	2	2	2	0	Short	repeat	of	unknown	function	(DUF308)
Band_7	PF01145.25	gi|529077017|ref|YP_008376020.1|	-	1.5e-37	129.3	4.0	1.5e-37	129.3	4.0	1.9	3	0	0	3	3	3	1	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.6	gi|529077017|ref|YP_008376020.1|	-	0.00084	19.1	0.2	0.0017	18.1	0.2	1.6	1	0	0	1	1	1	1	SPFH	domain-Band	7	family
HTH_20	PF12840.7	gi|529077018|ref|YP_008376021.1|	-	1.1e-10	41.4	0.2	3.2e-06	27.1	0.0	2.4	2	0	0	2	2	2	2	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|529077018|ref|YP_008376021.1|	-	3e-09	36.6	0.5	2e-08	34.0	0.1	2.1	2	0	0	2	2	2	1	MarR	family
MarR	PF01047.22	gi|529077018|ref|YP_008376021.1|	-	6.1e-08	32.5	0.0	1e-05	25.3	0.0	2.3	2	0	0	2	2	2	1	MarR	family
HTH_34	PF13601.6	gi|529077018|ref|YP_008376021.1|	-	2.6e-07	30.7	0.0	0.0073	16.5	0.0	2.2	2	0	0	2	2	2	2	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|529077018|ref|YP_008376021.1|	-	3e-07	30.2	0.0	0.00026	20.8	0.0	2.3	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|529077018|ref|YP_008376021.1|	-	8.1e-07	28.5	0.0	2.6e-06	26.9	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|529077018|ref|YP_008376021.1|	-	1.9e-05	24.5	0.0	3.4e-05	23.7	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.19	gi|529077018|ref|YP_008376021.1|	-	0.00015	21.6	0.0	0.0023	17.8	0.0	2.1	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.19	gi|529077018|ref|YP_008376021.1|	-	0.00016	21.8	0.0	0.00034	20.8	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_Crp_2	PF13545.6	gi|529077018|ref|YP_008376021.1|	-	0.00025	21.0	0.0	0.00048	20.1	0.0	1.5	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|529077018|ref|YP_008376021.1|	-	0.00072	19.3	2.3	0.0044	16.8	0.2	2.6	2	1	0	2	2	2	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|529077018|ref|YP_008376021.1|	-	0.0029	17.9	0.0	0.0075	16.6	0.0	1.7	2	0	0	2	2	1	1	Transcriptional	regulator
HTH_DeoR	PF08220.12	gi|529077018|ref|YP_008376021.1|	-	0.0073	16.0	0.0	0.014	15.1	0.0	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
GntR	PF00392.21	gi|529077018|ref|YP_008376021.1|	-	0.0077	15.9	0.0	0.017	14.7	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
DUF4423	PF14394.6	gi|529077018|ref|YP_008376021.1|	-	0.014	15.1	0.0	4	7.1	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4423)
HTH_36	PF13730.6	gi|529077018|ref|YP_008376021.1|	-	0.044	13.7	0.0	0.084	12.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
RP-C	PF03428.13	gi|529077018|ref|YP_008376021.1|	-	0.054	13.1	0.0	0.8	9.3	0.0	2.2	2	0	0	2	2	2	0	Replication	protein	C	N-terminal	domain
DUF2250	PF10007.9	gi|529077018|ref|YP_008376021.1|	-	0.13	12.4	0.0	0.24	11.5	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
LexA_DNA_bind	PF01726.16	gi|529077019|ref|YP_008376022.1|	-	0.0011	18.6	0.0	0.0019	17.9	0.0	1.3	1	0	0	1	1	1	1	LexA	DNA	binding	domain
HTH_24	PF13412.6	gi|529077019|ref|YP_008376022.1|	-	0.015	14.8	1.8	0.099	12.2	0.4	2.3	2	1	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|529077019|ref|YP_008376022.1|	-	0.032	14.1	0.4	0.35	10.7	0.4	2.2	1	1	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
PEGA	PF08308.11	gi|529077019|ref|YP_008376022.1|	-	0.054	13.4	0.0	0.07	13.0	0.0	1.2	1	0	0	1	1	1	0	PEGA	domain
RepL	PF05732.11	gi|529077019|ref|YP_008376022.1|	-	0.069	12.6	0.0	0.083	12.3	0.0	1.1	1	0	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
HTH_6	PF01418.17	gi|529077019|ref|YP_008376022.1|	-	0.17	11.8	0.0	0.24	11.4	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain,	rpiR	family
TRAM	PF01938.20	gi|529077020|ref|YP_008376023.1|	-	1.7e-12	47.1	2.7	1.7e-12	47.1	2.7	1.6	2	0	0	2	2	2	1	TRAM	domain
CxxCxxCC	PF03692.15	gi|529077021|ref|YP_008376024.1|	-	1.5e-15	57.6	0.0	3.7e-15	56.4	0.0	1.7	1	1	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
HTH_24	PF13412.6	gi|529077022|ref|YP_008376025.1|	-	2.5e-05	23.7	0.0	4.7e-05	22.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|529077022|ref|YP_008376025.1|	-	5.6e-05	22.9	0.2	8.1e-05	22.4	0.2	1.3	1	0	0	1	1	1	1	MarR	family
GntR	PF00392.21	gi|529077022|ref|YP_008376025.1|	-	6.4e-05	22.5	0.1	9.6e-05	22.0	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_20	PF12840.7	gi|529077022|ref|YP_008376025.1|	-	7.6e-05	22.7	0.3	0.00023	21.2	0.3	1.8	1	1	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|529077022|ref|YP_008376025.1|	-	0.00078	19.3	0.0	0.0012	18.7	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_12	PF08461.10	gi|529077022|ref|YP_008376025.1|	-	0.0055	16.6	0.4	0.024	14.5	0.1	2.2	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
TFIIE_alpha	PF02002.17	gi|529077022|ref|YP_008376025.1|	-	0.012	15.5	0.0	0.013	15.3	0.0	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
TrmB	PF01978.19	gi|529077022|ref|YP_008376025.1|	-	0.024	14.5	0.1	0.033	14.1	0.1	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|529077022|ref|YP_008376025.1|	-	0.038	14.5	0.1	0.056	13.9	0.1	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.6	gi|529077022|ref|YP_008376025.1|	-	0.044	13.8	0.1	0.075	13.0	0.1	1.5	1	1	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_5	PF01022.20	gi|529077022|ref|YP_008376025.1|	-	0.05	13.5	0.0	0.071	13.0	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
PadR	PF03551.14	gi|529077022|ref|YP_008376025.1|	-	0.054	13.5	0.3	0.075	13.0	0.3	1.4	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Rrf2	PF02082.20	gi|529077022|ref|YP_008376025.1|	-	0.068	13.5	0.0	0.096	13.0	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
Methyltransf_25	PF13649.6	gi|529077023|ref|YP_008376026.1|	-	1.6e-22	80.0	0.1	2.5e-22	79.4	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|529077023|ref|YP_008376026.1|	-	4.7e-22	78.5	0.0	7.3e-22	77.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|529077023|ref|YP_008376026.1|	-	5.6e-16	58.7	0.0	7.9e-16	58.2	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|529077023|ref|YP_008376026.1|	-	3.6e-14	52.7	0.0	5.2e-14	52.1	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.6	gi|529077023|ref|YP_008376026.1|	-	7.2e-14	52.0	0.0	9.5e-14	51.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|529077023|ref|YP_008376026.1|	-	4.1e-13	49.9	0.0	6.7e-13	49.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|529077023|ref|YP_008376026.1|	-	1e-06	28.5	0.0	1.4e-06	28.1	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
UPF0020	PF01170.18	gi|529077023|ref|YP_008376026.1|	-	0.00013	21.7	0.0	0.00031	20.5	0.0	1.6	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
MTS	PF05175.14	gi|529077023|ref|YP_008376026.1|	-	0.00015	21.3	0.0	0.00021	20.9	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	small	domain
RrnaAD	PF00398.20	gi|529077023|ref|YP_008376026.1|	-	0.0003	19.9	0.0	0.00039	19.6	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_9	PF08003.11	gi|529077023|ref|YP_008376026.1|	-	0.0009	18.3	0.0	0.0013	17.8	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
TPMT	PF05724.11	gi|529077023|ref|YP_008376026.1|	-	0.0021	17.7	0.0	0.0034	17.1	0.0	1.3	1	0	0	1	1	1	1	Thiopurine	S-methyltransferase	(TPMT)
Methyltransf_20	PF12147.8	gi|529077023|ref|YP_008376026.1|	-	0.0028	16.9	0.0	0.0081	15.3	0.0	1.8	2	0	0	2	2	2	1	Putative	methyltransferase
NodS	PF05401.11	gi|529077023|ref|YP_008376026.1|	-	0.003	17.2	0.0	0.0038	16.9	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
Methyltransf_4	PF02390.17	gi|529077023|ref|YP_008376026.1|	-	0.0039	16.7	0.0	0.0054	16.2	0.0	1.2	1	0	0	1	1	1	1	Putative	methyltransferase
CMAS	PF02353.20	gi|529077023|ref|YP_008376026.1|	-	0.0047	16.3	0.0	0.0064	15.8	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
TehB	PF03848.14	gi|529077023|ref|YP_008376026.1|	-	0.0076	15.7	0.0	0.01	15.2	0.0	1.2	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
Methyltransf_15	PF09445.10	gi|529077023|ref|YP_008376026.1|	-	0.011	15.3	0.0	0.014	14.9	0.0	1.2	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
Methyltransf_32	PF13679.6	gi|529077023|ref|YP_008376026.1|	-	0.018	15.0	0.0	0.025	14.6	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
PCMT	PF01135.19	gi|529077023|ref|YP_008376026.1|	-	0.025	14.3	0.0	0.033	13.9	0.0	1.2	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
FtsJ	PF01728.19	gi|529077023|ref|YP_008376026.1|	-	0.063	13.4	0.0	0.079	13.1	0.0	1.2	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
DUF938	PF06080.12	gi|529077023|ref|YP_008376026.1|	-	0.08	12.7	0.0	0.12	12.1	0.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF938)
tRNA_U5-meth_tr	PF05958.11	gi|529077023|ref|YP_008376026.1|	-	0.13	11.2	0.0	0.18	10.7	0.0	1.3	1	0	0	1	1	1	0	tRNA	(Uracil-5-)-methyltransferase
Glycos_transf_2	PF00535.26	gi|529077024|ref|YP_008376027.1|	-	2.5e-12	46.9	0.1	3.6e-12	46.4	0.1	1.4	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|529077024|ref|YP_008376027.1|	-	2.6e-05	24.2	3.4	0.0084	16.0	0.6	2.2	1	1	0	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|529077024|ref|YP_008376027.1|	-	0.0017	17.9	0.0	0.0056	16.2	0.0	1.7	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
Amidohydro_2	PF04909.14	gi|529077025|ref|YP_008376028.1|	-	1.7e-11	44.4	1.3	1.4e-10	41.4	1.3	2.0	1	1	0	1	1	1	1	Amidohydrolase
Cpn60_TCP1	PF00118.24	gi|529077026|ref|YP_008376029.1|	-	2.9e-146	488.0	10.9	3.3e-146	487.8	10.9	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Caroten_synth	PF04240.12	gi|529077028|ref|YP_008376031.1|	-	1.4e-09	38.2	15.6	2.2e-09	37.5	15.6	1.4	1	1	0	1	1	1	1	Carotenoid	biosynthesis	protein
PQQ_2	PF13360.6	gi|529077029|ref|YP_008376032.1|	-	9.6e-18	64.6	13.3	1.2e-06	28.3	2.4	3.8	1	1	2	3	3	3	3	PQQ-like	domain
PQQ	PF01011.21	gi|529077029|ref|YP_008376032.1|	-	1.6e-15	56.2	5.8	9.9e-06	25.2	0.0	6.0	5	0	0	5	5	5	4	PQQ	enzyme	repeat
PQQ_3	PF13570.6	gi|529077029|ref|YP_008376032.1|	-	3.2e-15	56.1	41.7	3.1e-08	33.9	0.6	8.1	8	2	0	8	8	8	6	PQQ-like	domain
DUF4905	PF16248.5	gi|529077029|ref|YP_008376032.1|	-	0.024	14.5	0.0	32	4.5	0.0	3.4	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4905)
TAT_signal	PF10518.9	gi|529077029|ref|YP_008376032.1|	-	0.62	10.0	5.7	1.5	8.7	5.7	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF5122	PF17164.4	gi|529077029|ref|YP_008376032.1|	-	4.8	7.6	7.5	12	6.2	0.1	3.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF5122)	beta-propeller
SAM_adeno_trans	PF01887.16	gi|529077030|ref|YP_008376033.1|	-	2.4e-72	243.2	0.1	2.8e-72	243.0	0.1	1.0	1	0	0	1	1	1	1	S-adenosyl-l-methionine	hydroxide	adenosyltransferase
CTP_transf_like	PF01467.26	gi|529077031|ref|YP_008376034.1|	-	1.2e-12	48.2	0.1	2.9e-12	47.0	0.1	1.7	1	1	0	1	1	1	1	Cytidylyltransferase-like
Lon_C	PF05362.13	gi|529077032|ref|YP_008376035.1|	-	1.3e-34	119.6	4.6	2.1e-34	118.9	4.6	1.4	1	0	0	1	1	1	1	Lon	protease	(S16)	C-terminal	proteolytic	domain
AAA_32	PF13654.6	gi|529077032|ref|YP_008376035.1|	-	3.5e-30	105.3	0.0	5.3e-23	81.6	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
Mg_chelatase	PF01078.21	gi|529077032|ref|YP_008376035.1|	-	4.7e-16	58.8	0.1	2.8e-10	40.0	0.0	2.3	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.26	gi|529077032|ref|YP_008376035.1|	-	1.3e-14	54.2	0.0	1.6e-08	34.5	0.0	2.4	2	0	0	2	2	2	2	Sigma-54	interaction	domain
ChlI	PF13541.6	gi|529077032|ref|YP_008376035.1|	-	8.3e-10	38.6	0.9	1.7e-09	37.5	0.6	1.7	2	0	0	2	2	1	1	Subunit	ChlI	of	Mg-chelatase
AAA_5	PF07728.14	gi|529077032|ref|YP_008376035.1|	-	8.2e-09	35.6	0.0	0.0015	18.5	0.0	2.6	2	0	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
MCM	PF00493.23	gi|529077032|ref|YP_008376035.1|	-	1.5e-07	30.8	0.1	0.0049	16.0	0.0	2.3	2	0	0	2	2	2	2	MCM	P-loop	domain
AAA	PF00004.29	gi|529077032|ref|YP_008376035.1|	-	2.1e-06	28.2	0.0	0.049	14.0	0.0	2.6	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.12	gi|529077032|ref|YP_008376035.1|	-	4.6e-06	26.5	0.1	0.0061	16.3	0.0	2.4	2	0	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Sigma54_activ_2	PF14532.6	gi|529077032|ref|YP_008376035.1|	-	3.8e-05	23.8	0.0	0.055	13.6	0.0	2.4	2	0	0	2	2	2	2	Sigma-54	interaction	domain
TIP49	PF06068.13	gi|529077032|ref|YP_008376035.1|	-	0.00021	20.6	0.9	0.072	12.3	0.0	2.8	3	0	0	3	3	3	1	TIP49	P-loop	domain
AAA_7	PF12775.7	gi|529077032|ref|YP_008376035.1|	-	0.00024	20.6	0.1	0.00068	19.2	0.0	1.7	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
AAA_3	PF07726.11	gi|529077032|ref|YP_008376035.1|	-	0.00038	20.3	0.1	0.59	10.0	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_19	PF13245.6	gi|529077032|ref|YP_008376035.1|	-	0.00053	20.3	0.0	0.65	10.3	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_22	PF13401.6	gi|529077032|ref|YP_008376035.1|	-	0.00057	20.2	0.0	0.011	16.1	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.6	gi|529077032|ref|YP_008376035.1|	-	0.0017	18.1	0.0	0.17	11.6	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_PrkA	PF08298.11	gi|529077032|ref|YP_008376035.1|	-	0.0029	16.6	0.0	0.13	11.1	0.0	2.2	2	0	0	2	2	2	1	PrkA	AAA	domain
MCM_lid	PF17855.1	gi|529077032|ref|YP_008376035.1|	-	0.013	15.9	0.4	0.077	13.4	0.0	2.2	1	1	1	2	2	2	0	MCM	AAA-lid	domain
PhoH	PF02562.16	gi|529077032|ref|YP_008376035.1|	-	0.015	14.8	0.0	0.028	13.9	0.0	1.4	1	0	0	1	1	1	0	PhoH-like	protein
AAA_33	PF13671.6	gi|529077032|ref|YP_008376035.1|	-	0.016	15.4	0.0	0.06	13.5	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
DUF815	PF05673.13	gi|529077032|ref|YP_008376035.1|	-	0.023	13.9	0.0	0.05	12.8	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
IstB_IS21	PF01695.17	gi|529077032|ref|YP_008376035.1|	-	0.023	14.4	0.0	0.052	13.3	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
ABC_tran	PF00005.27	gi|529077032|ref|YP_008376035.1|	-	0.036	14.6	0.0	0.11	13.1	0.0	1.8	1	0	0	1	1	1	0	ABC	transporter
NACHT	PF05729.12	gi|529077032|ref|YP_008376035.1|	-	0.043	13.7	0.0	0.076	12.9	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
DUF4116	PF13475.6	gi|529077032|ref|YP_008376035.1|	-	0.043	13.6	0.5	1.4	8.7	0.1	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4116)
TrwB_AAD_bind	PF10412.9	gi|529077032|ref|YP_008376035.1|	-	0.047	12.6	0.0	0.071	12.0	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_10	PF12846.7	gi|529077032|ref|YP_008376035.1|	-	0.059	12.3	0.0	0.16	10.9	0.0	1.6	2	0	0	2	2	2	0	AAA-like	domain
T2SSE	PF00437.20	gi|529077032|ref|YP_008376035.1|	-	0.062	12.3	0.7	0.22	10.5	0.0	2.2	3	0	0	3	3	3	0	Type	II/IV	secretion	system	protein
AAA_18	PF13238.6	gi|529077032|ref|YP_008376035.1|	-	0.065	13.8	0.0	0.49	10.9	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
DUF3090	PF11290.8	gi|529077032|ref|YP_008376035.1|	-	0.12	12.1	0.0	0.36	10.6	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3090)
CPBP	PF02517.16	gi|529077034|ref|YP_008376037.1|	-	3.3e-11	43.4	6.3	3.3e-11	43.4	6.3	2.0	2	0	0	2	2	2	1	CPBP	intramembrane	metalloprotease
BAAT_C	PF08840.11	gi|529077035|ref|YP_008376038.1|	-	3.1e-11	43.6	0.0	3.5e-11	43.4	0.0	1.0	1	0	0	1	1	1	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
DLH	PF01738.18	gi|529077035|ref|YP_008376038.1|	-	0.18	11.3	0.0	0.2	11.2	0.0	1.1	1	0	0	1	1	1	0	Dienelactone	hydrolase	family
CBS	PF00571.28	gi|529077036|ref|YP_008376039.1|	-	2.4e-11	43.9	5.5	7.6e-06	26.3	1.0	2.7	2	1	1	3	3	3	2	CBS	domain
PGM_PMM_II	PF02879.16	gi|529077036|ref|YP_008376039.1|	-	0.092	13.4	0.1	0.66	10.6	0.2	2.1	2	1	0	2	2	2	0	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
CMAS	PF02353.20	gi|529077037|ref|YP_008376040.1|	-	0.0012	18.2	0.0	0.0014	17.9	0.0	1.0	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
GATase_6	PF13522.6	gi|529077039|ref|YP_008376042.1|	-	7.7e-20	71.5	0.0	1.9e-19	70.2	0.0	1.7	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|529077039|ref|YP_008376042.1|	-	5.7e-19	68.2	0.0	1.5e-18	66.9	0.0	1.7	2	0	0	2	2	2	1	Glutamine	amidotransferase	domain
Pribosyltran	PF00156.27	gi|529077039|ref|YP_008376042.1|	-	3.2e-07	30.0	0.1	6.8e-07	28.9	0.1	1.5	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
GATase_4	PF13230.6	gi|529077039|ref|YP_008376042.1|	-	8.7e-05	21.6	0.0	0.00017	20.6	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
Ribosomal_L37e	PF01907.19	gi|529077040|ref|YP_008376043.1|	-	1e-22	80.0	11.9	1.1e-22	79.9	11.9	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L37e
Ribosomal_L32p	PF01783.23	gi|529077040|ref|YP_008376043.1|	-	0.11	12.7	6.4	0.13	12.6	5.9	1.4	1	1	0	1	1	1	0	Ribosomal	L32p	protein	family
zinc_ribbon_2	PF13240.6	gi|529077040|ref|YP_008376043.1|	-	0.58	9.9	5.9	0.56	10.0	0.6	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
LSM	PF01423.22	gi|529077041|ref|YP_008376044.1|	-	5.9e-13	48.3	0.5	9.9e-11	41.2	0.5	2.0	1	1	0	1	1	1	1	LSM	domain
SM-ATX	PF14438.6	gi|529077041|ref|YP_008376044.1|	-	3.2e-05	24.0	0.1	0.00054	20.0	0.0	1.9	1	1	1	2	2	2	1	Ataxin	2	SM	domain
Peptidase_M42	PF05343.14	gi|529077042|ref|YP_008376045.1|	-	5.9e-79	265.1	3.0	6.8e-79	264.9	3.0	1.0	1	0	0	1	1	1	1	M42	glutamyl	aminopeptidase
Peptidase_M18	PF02127.15	gi|529077042|ref|YP_008376045.1|	-	5.1e-05	22.2	0.0	0.0027	16.6	0.0	2.3	1	1	0	2	2	2	2	Aminopeptidase	I	zinc	metalloprotease	(M18)
Sulf_transp	PF04143.14	gi|529077043|ref|YP_008376046.1|	-	1.5e-43	149.6	31.2	2.3e-43	148.9	31.2	1.3	1	1	0	1	1	1	1	Sulphur	transport
DUF111	PF01969.17	gi|529077043|ref|YP_008376046.1|	-	0.24	10.5	0.7	0.37	9.8	0.7	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF111
Cupredoxin_1	PF13473.6	gi|529077044|ref|YP_008376047.1|	-	5.4e-09	36.1	0.0	6.6e-09	35.8	0.0	1.1	1	0	0	1	1	1	1	Cupredoxin-like	domain
Zincin_2	PF10103.9	gi|529077045|ref|YP_008376048.1|	-	1.2e-64	218.7	6.5	8.3e-36	123.9	1.3	2.0	1	1	1	2	2	2	2	Zincin-like	metallopeptidase
FeS_assembly_P	PF01883.19	gi|529077047|ref|YP_008376050.1|	-	1.4e-23	82.8	1.4	1.9e-23	82.4	1.4	1.1	1	0	0	1	1	1	1	Iron-sulfur	cluster	assembly	protein
Arch_fla_DE	PF04659.13	gi|529077048|ref|YP_008376051.1|	-	1.2e-24	86.0	0.0	1.6e-24	85.6	0.0	1.2	1	0	0	1	1	1	1	Archaeal	flagella	protein
AAA_31	PF13614.6	gi|529077049|ref|YP_008376052.1|	-	1.5e-36	125.9	0.0	8.3e-36	123.6	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|529077049|ref|YP_008376052.1|	-	1.3e-19	70.5	0.0	1.7e-19	70.1	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MipZ	PF09140.11	gi|529077049|ref|YP_008376052.1|	-	5e-10	39.1	1.7	2.5e-06	27.0	0.1	2.3	2	0	0	2	2	2	2	ATPase	MipZ
ParA	PF10609.9	gi|529077049|ref|YP_008376052.1|	-	6.5e-08	32.3	1.7	1.7e-06	27.7	0.2	2.3	1	1	1	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
CBP_BcsQ	PF06564.12	gi|529077049|ref|YP_008376052.1|	-	7.8e-08	32.1	0.2	0.00043	19.8	0.1	2.4	2	0	0	2	2	2	2	Cellulose	biosynthesis	protein	BcsQ
ArsA_ATPase	PF02374.15	gi|529077049|ref|YP_008376052.1|	-	4.5e-06	26.1	0.2	0.00062	19.0	0.0	2.2	2	0	0	2	2	2	1	Anion-transporting	ATPase
Fer4_NifH	PF00142.18	gi|529077049|ref|YP_008376052.1|	-	1.4e-05	24.7	0.1	3.8e-05	23.3	0.0	1.7	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
adh_short_C2	PF13561.6	gi|529077049|ref|YP_008376052.1|	-	0.00065	19.3	0.2	0.074	12.6	0.0	2.2	2	0	0	2	2	2	1	Enoyl-(Acyl	carrier	protein)	reductase
AAA_25	PF13481.6	gi|529077049|ref|YP_008376052.1|	-	0.0021	17.6	1.6	0.094	12.3	0.0	2.6	3	0	0	3	3	3	1	AAA	domain
DnaB_C	PF03796.15	gi|529077049|ref|YP_008376052.1|	-	0.0051	16.2	0.0	0.22	10.8	0.0	2.1	2	0	0	2	2	2	1	DnaB-like	helicase	C	terminal	domain
AAA_30	PF13604.6	gi|529077049|ref|YP_008376052.1|	-	0.033	13.9	0.2	0.1	12.3	0.2	1.7	1	1	0	1	1	1	0	AAA	domain
VirC1	PF07015.11	gi|529077049|ref|YP_008376052.1|	-	0.052	12.8	1.4	0.36	10.1	0.1	2.3	2	0	0	2	2	2	0	VirC1	protein
PhoH	PF02562.16	gi|529077049|ref|YP_008376052.1|	-	0.082	12.3	0.0	0.13	11.7	0.0	1.3	1	0	0	1	1	1	0	PhoH-like	protein
CLP1_P	PF16575.5	gi|529077049|ref|YP_008376052.1|	-	0.11	12.3	0.0	0.28	11.0	0.0	1.6	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
IstB_IS21	PF01695.17	gi|529077049|ref|YP_008376052.1|	-	0.11	12.2	0.0	1.4	8.6	0.0	2.4	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
Methyltransf_24	PF13578.6	gi|529077049|ref|YP_008376052.1|	-	0.12	13.4	0.1	6	7.9	0.1	2.5	1	1	0	1	1	1	0	Methyltransferase	domain
SRP54	PF00448.22	gi|529077049|ref|YP_008376052.1|	-	0.15	11.7	0.6	2.3	7.8	0.1	2.5	3	0	0	3	3	3	0	SRP54-type	protein,	GTPase	domain
AAA_24	PF13479.6	gi|529077049|ref|YP_008376052.1|	-	0.18	11.5	1.1	0.68	9.6	0.3	2.3	1	1	1	2	2	2	0	AAA	domain
CheW	PF01584.19	gi|529077050|ref|YP_008376053.1|	-	2e-19	69.6	0.2	3.1e-19	69.0	0.2	1.2	1	0	0	1	1	1	1	CheW-like	domain
Pyr_redox_2	PF07992.14	gi|529077051|ref|YP_008376054.1|	-	2.4e-27	96.0	0.9	5.7e-27	94.7	0.9	1.6	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|529077051|ref|YP_008376054.1|	-	4.3e-11	43.2	1.4	1.9e-08	34.7	0.1	2.6	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|529077051|ref|YP_008376054.1|	-	6e-06	26.1	10.8	0.15	11.6	0.1	3.7	2	1	2	4	4	4	3	FAD	dependent	oxidoreductase
NAD_binding_9	PF13454.6	gi|529077051|ref|YP_008376054.1|	-	0.00024	21.1	6.9	0.16	12.0	0.1	3.9	3	1	1	4	4	4	2	FAD-NAD(P)-binding
NAD_binding_8	PF13450.6	gi|529077051|ref|YP_008376054.1|	-	0.00043	20.5	0.8	1.6	9.0	0.1	2.8	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
Sacchrp_dh_NADP	PF03435.18	gi|529077051|ref|YP_008376054.1|	-	0.033	14.5	0.3	0.38	11.0	0.0	2.6	3	0	0	3	3	3	0	Saccharopine	dehydrogenase	NADP	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|529077051|ref|YP_008376054.1|	-	0.083	12.5	1.4	0.5	9.9	0.0	2.6	2	1	1	3	3	3	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Thi4	PF01946.17	gi|529077051|ref|YP_008376054.1|	-	0.11	11.7	0.3	4.3	6.5	0.0	2.3	2	0	0	2	2	2	0	Thi4	family
GHMP_kinases_N	PF00288.26	gi|529077052|ref|YP_008376055.1|	-	1.7e-08	34.5	1.1	3.2e-08	33.7	1.1	1.4	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
MDD_C	PF18376.1	gi|529077052|ref|YP_008376055.1|	-	0.00068	19.4	0.0	0.001	18.9	0.0	1.2	1	0	0	1	1	1	1	Mevalonate	5-diphosphate	decarboxylase	C-terminal	domain
UPF0175	PF03683.13	gi|529077054|ref|YP_008376057.1|	-	9.1e-08	31.7	0.1	9.1e-08	31.7	0.1	1.9	1	1	0	2	2	2	1	Uncharacterised	protein	family	(UPF0175)
RHH_1	PF01402.21	gi|529077054|ref|YP_008376057.1|	-	0.00042	20.1	2.6	0.00042	20.1	2.6	1.9	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
Ad_Cy_reg	PF16701.5	gi|529077054|ref|YP_008376057.1|	-	0.0016	18.2	1.3	0.0019	17.9	1.3	1.1	1	0	0	1	1	1	1	Adenylate	cyclase	regulatory	domain
Proton_antipo_M	PF00361.20	gi|529077055|ref|YP_008376058.1|	-	1.6e-66	224.5	25.0	2.8e-66	223.7	20.4	2.2	2	0	0	2	2	2	2	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|529077055|ref|YP_008376058.1|	-	1.8	8.7	7.0	0.24	11.5	1.1	2.7	2	0	0	2	2	2	0	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Proton_antipo_M	PF00361.20	gi|529077056|ref|YP_008376059.1|	-	2.8e-73	246.7	22.4	2.8e-73	246.7	22.4	1.5	2	0	0	2	2	2	1	Proton-conducting	membrane	transporter
RAMP4	PF06624.12	gi|529077056|ref|YP_008376059.1|	-	0.042	13.9	0.0	0.14	12.2	0.0	1.9	1	0	0	1	1	1	0	Ribosome	associated	membrane	protein	RAMP4
Oxidored_q5_N	PF01059.17	gi|529077056|ref|YP_008376059.1|	-	0.44	10.7	0.1	0.44	10.7	0.1	2.9	3	1	0	3	3	3	0	NADH-ubiquinone	oxidoreductase	chain	4,	amino	terminus
Proton_antipo_M	PF00361.20	gi|529077057|ref|YP_008376060.1|	-	2.6e-76	256.7	20.4	6.2e-76	255.4	20.4	1.7	1	0	0	1	1	1	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|529077057|ref|YP_008376060.1|	-	2.4e-14	53.2	1.6	4.1e-14	52.4	0.2	2.3	2	0	0	2	2	2	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Proton_antipo_C	PF01010.19	gi|529077057|ref|YP_008376060.1|	-	0.02	14.6	0.0	0.095	12.3	0.0	2.1	2	1	0	2	2	2	0	NADH-dehyrogenase	subunit	F,	TMs,	(complex	I)	C-terminus
Oxidored_q2	PF00420.24	gi|529077058|ref|YP_008376061.1|	-	1.3e-22	79.4	8.7	1.6e-22	79.1	8.7	1.0	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
DUF2567	PF10821.8	gi|529077058|ref|YP_008376061.1|	-	0.0068	16.5	2.0	0.0074	16.4	1.3	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2567)
Oxidored_q3	PF00499.20	gi|529077059|ref|YP_008376062.1|	-	0.024	14.4	0.5	0.027	14.2	0.5	1.1	1	0	0	1	1	1	0	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
Oxidored_q3	PF00499.20	gi|529077060|ref|YP_008376063.1|	-	1.5e-17	63.6	6.7	2.4e-17	63.0	6.7	1.3	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
DUF4040	PF13244.6	gi|529077060|ref|YP_008376063.1|	-	0.0051	16.9	14.0	0.0051	16.9	14.0	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4040)
DUF5381	PF17353.2	gi|529077060|ref|YP_008376063.1|	-	0.18	11.5	1.0	0.24	11.1	1.0	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5381)
NAD4L	PF06235.11	gi|529077060|ref|YP_008376063.1|	-	0.26	11.3	4.8	2.7	8.0	0.1	2.3	2	1	0	2	2	2	0	NADH	dehydrogenase	subunit	4L	(NAD4L)
DUF456	PF04306.13	gi|529077061|ref|YP_008376064.1|	-	2.7e-28	99.0	26.2	2.7e-28	99.0	26.2	1.6	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF456)
MazE_antitoxin	PF04014.18	gi|529077062|ref|YP_008376065.1|	-	6.9e-09	35.4	0.1	8.8e-09	35.1	0.1	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|529077062|ref|YP_008376065.1|	-	0.00023	21.5	0.0	0.0003	21.2	0.0	1.2	1	0	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
CDC48_N	PF02359.18	gi|529077062|ref|YP_008376065.1|	-	0.19	11.9	0.0	0.22	11.7	0.0	1.1	1	0	0	1	1	1	0	Cell	division	protein	48	(CDC48),	N-terminal	domain
PIN	PF01850.21	gi|529077064|ref|YP_008376067.1|	-	1.5e-06	28.7	0.5	1.6e-06	28.6	0.5	1.1	1	0	0	1	1	1	1	PIN	domain
HTH_33	PF13592.6	gi|529077064|ref|YP_008376067.1|	-	0.067	12.8	0.0	0.094	12.4	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
Fer4	PF00037.27	gi|529077065|ref|YP_008376068.1|	-	9.6e-13	47.4	9.3	4.5e-07	29.4	2.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|529077065|ref|YP_008376068.1|	-	2.1e-12	47.4	10.8	3.4e-12	46.8	10.8	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|529077065|ref|YP_008376068.1|	-	1.1e-11	45.5	2.5	3.3e-06	27.9	0.2	2.3	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.6	gi|529077065|ref|YP_008376068.1|	-	9.5e-09	35.3	9.5	1.4e-08	34.8	9.5	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|529077065|ref|YP_008376068.1|	-	3.7e-08	33.4	11.6	1e-07	32.0	12.0	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|529077065|ref|YP_008376068.1|	-	9e-08	32.1	20.0	2e-06	27.8	11.6	1.5	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|529077065|ref|YP_008376068.1|	-	1.5e-06	28.5	7.9	0.00091	19.6	12.0	2.2	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|529077065|ref|YP_008376068.1|	-	1e-05	25.4	13.2	0.012	15.6	1.8	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|529077065|ref|YP_008376068.1|	-	1.6e-05	24.7	11.7	0.0023	17.9	2.0	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|529077065|ref|YP_008376068.1|	-	2.1e-05	24.9	12.7	0.01	16.4	1.9	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|529077065|ref|YP_008376068.1|	-	0.00019	21.7	13.9	4.3	8.1	13.9	2.2	1	1	0	1	1	1	1	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|529077065|ref|YP_008376068.1|	-	0.00023	21.9	14.0	0.0041	18.0	2.5	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|529077065|ref|YP_008376068.1|	-	0.00064	19.9	9.9	0.04	14.1	1.9	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|529077065|ref|YP_008376068.1|	-	0.0012	19.6	4.3	0.41	11.5	0.4	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
ETF_QO	PF05187.13	gi|529077065|ref|YP_008376068.1|	-	0.015	15.4	8.1	0.055	13.6	8.2	1.7	1	1	1	2	2	2	0	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Fer4_13	PF13370.6	gi|529077065|ref|YP_008376068.1|	-	0.035	14.6	10.6	0.55	10.8	1.5	2.6	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
TNFR_c6	PF00020.18	gi|529077065|ref|YP_008376068.1|	-	0.23	11.9	8.0	3.3	8.2	1.3	2.5	2	0	0	2	2	2	0	TNFR/NGFR	cysteine-rich	region
c-SKI_SMAD_bind	PF08782.10	gi|529077065|ref|YP_008376068.1|	-	6.3	7.1	9.2	11	6.4	0.8	2.2	1	1	1	2	2	2	0	c-SKI	Smad4	binding	domain
NADHdh	PF00146.21	gi|529077066|ref|YP_008376069.1|	-	1.5e-100	336.4	15.5	1.8e-100	336.1	15.5	1.1	1	0	0	1	1	1	1	NADH	dehydrogenase
Complex1_49kDa	PF00346.19	gi|529077067|ref|YP_008376070.1|	-	1.7e-83	279.9	0.1	2.1e-82	276.3	0.1	2.0	1	1	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
Complex1_30kDa	PF00329.19	gi|529077067|ref|YP_008376070.1|	-	3e-32	111.8	0.1	6e-32	110.8	0.1	1.5	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
Oxidored_q6	PF01058.22	gi|529077068|ref|YP_008376071.1|	-	7e-21	74.4	0.1	1e-20	73.9	0.1	1.2	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
Oxidored_q4	PF00507.19	gi|529077069|ref|YP_008376072.1|	-	1.7e-31	108.3	0.2	2.7e-31	107.7	0.2	1.3	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase,	chain	3
OppC_N	PF12911.7	gi|529077069|ref|YP_008376072.1|	-	0.29	11.1	0.1	0.29	11.1	0.1	2.5	2	1	0	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
AIRC	PF00731.20	gi|529077070|ref|YP_008376073.1|	-	2.8e-48	163.2	0.0	5.1e-48	162.4	0.0	1.4	1	1	0	1	1	1	1	AIR	carboxylase
ATP-grasp	PF02222.22	gi|529077071|ref|YP_008376074.1|	-	1.2e-48	164.9	0.0	1.9e-48	164.3	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
PurK_C	PF17769.1	gi|529077071|ref|YP_008376074.1|	-	2.5e-13	49.5	0.0	4.8e-13	48.6	0.0	1.4	1	0	0	1	1	1	1	Phosphoribosylaminoimidazole	carboxylase	C-terminal	domain
2-Hacid_dh_C	PF02826.19	gi|529077071|ref|YP_008376074.1|	-	2.8e-06	26.8	0.0	4.7e-06	26.1	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Dala_Dala_lig_C	PF07478.13	gi|529077071|ref|YP_008376074.1|	-	0.00039	20.0	0.0	0.0048	16.5	0.0	2.3	1	1	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
ATP-grasp_5	PF13549.6	gi|529077071|ref|YP_008376074.1|	-	0.00052	19.5	0.0	0.00094	18.7	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|529077071|ref|YP_008376074.1|	-	0.0017	17.9	0.0	0.0022	17.5	0.0	1.3	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
3HCDH_N	PF02737.18	gi|529077071|ref|YP_008376074.1|	-	0.0076	16.1	0.1	0.012	15.5	0.1	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ATPgrasp_N	PF18130.1	gi|529077071|ref|YP_008376074.1|	-	0.0091	16.5	0.1	0.041	14.4	0.1	2.2	1	0	0	1	1	1	1	ATP-grasp	N-terminal	domain
XdhC_C	PF13478.6	gi|529077071|ref|YP_008376074.1|	-	0.029	14.9	0.0	0.064	13.8	0.0	1.6	1	0	0	1	1	1	0	XdhC	Rossmann	domain
Pyr_redox	PF00070.27	gi|529077071|ref|YP_008376074.1|	-	0.084	13.4	0.1	0.4	11.3	0.1	2.2	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
ATP-grasp_3	PF02655.14	gi|529077071|ref|YP_008376074.1|	-	0.16	12.0	0.0	0.57	10.2	0.0	1.8	1	1	0	1	1	1	0	ATP-grasp	domain
PMT_2	PF13231.6	gi|529077072|ref|YP_008376075.1|	-	5.8e-10	39.6	2.6	5.8e-10	39.6	2.6	2.9	3	0	0	3	3	3	2	Dolichyl-phosphate-mannose-protein	mannosyltransferase
Aminotran_1_2	PF00155.21	gi|529077073|ref|YP_008376076.1|	-	1.9e-65	221.5	0.0	2.1e-65	221.3	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Cys_Met_Meta_PP	PF01053.20	gi|529077073|ref|YP_008376076.1|	-	0.00021	19.9	0.0	0.00032	19.4	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Beta_elim_lyase	PF01212.21	gi|529077073|ref|YP_008376076.1|	-	0.0003	20.2	0.0	0.001	18.4	0.0	1.7	2	0	0	2	2	2	1	Beta-eliminating	lyase
DinB_2	PF12867.7	gi|529077073|ref|YP_008376076.1|	-	0.053	14.0	0.3	8.8	6.9	0.4	3.2	2	1	0	2	2	2	0	DinB	superfamily
Aminotran_5	PF00266.19	gi|529077073|ref|YP_008376076.1|	-	0.086	11.8	0.0	0.17	10.8	0.0	1.4	2	0	0	2	2	2	0	Aminotransferase	class-V
Aminotran_3	PF00202.21	gi|529077073|ref|YP_008376076.1|	-	0.11	11.2	0.0	0.14	10.8	0.0	1.3	1	0	0	1	1	1	0	Aminotransferase	class-III
DegT_DnrJ_EryC1	PF01041.17	gi|529077073|ref|YP_008376076.1|	-	0.13	11.5	0.0	0.26	10.6	0.0	1.4	1	0	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
CTP_transf_like	PF01467.26	gi|529077074|ref|YP_008376077.1|	-	1e-17	64.7	0.0	1.1e-17	64.5	0.0	1.0	1	0	0	1	1	1	1	Cytidylyltransferase-like
FAD_syn	PF06574.12	gi|529077074|ref|YP_008376077.1|	-	0.016	15.1	0.1	0.032	14.1	0.1	1.7	2	0	0	2	2	2	0	FAD	synthetase
Prok-JAB	PF14464.6	gi|529077075|ref|YP_008376078.1|	-	5.3e-11	42.3	0.1	7.4e-11	41.9	0.1	1.2	1	0	0	1	1	1	1	Prokaryotic	homologs	of	the	JAB	domain
RadC	PF04002.15	gi|529077075|ref|YP_008376078.1|	-	2.1e-05	24.4	0.0	3.4e-05	23.8	0.0	1.3	1	0	0	1	1	1	1	RadC-like	JAB	domain
tRNA_anti-codon	PF01336.25	gi|529077076|ref|YP_008376079.1|	-	2.8e-11	43.3	0.2	5.1e-11	42.4	0.2	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
S1	PF00575.23	gi|529077076|ref|YP_008376079.1|	-	0.00013	22.3	0.2	0.00013	22.3	0.2	2.0	2	0	0	2	2	2	1	S1	RNA	binding	domain
tRNA_anti_2	PF13742.6	gi|529077076|ref|YP_008376079.1|	-	0.0079	16.4	0.0	0.017	15.3	0.0	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
DHH	PF01368.20	gi|529077076|ref|YP_008376079.1|	-	0.0094	16.2	0.6	0.018	15.2	0.6	1.4	1	0	0	1	1	1	1	DHH	family
PLDc_2	PF13091.6	gi|529077077|ref|YP_008376080.1|	-	2.3e-37	127.9	0.0	7.3e-20	71.2	0.0	2.2	2	0	0	2	2	2	2	PLD-like	domain
LTD	PF00932.19	gi|529077077|ref|YP_008376080.1|	-	1.2e-06	28.8	0.1	2.9e-06	27.6	0.1	1.6	1	0	0	1	1	1	1	Lamin	Tail	Domain
PLDc	PF00614.22	gi|529077077|ref|YP_008376080.1|	-	2.3e-06	27.5	10.1	3.9e-06	26.8	0.3	2.9	3	0	0	3	3	3	2	Phospholipase	D	Active	site	motif
Regulator_TrmB	PF11495.8	gi|529077077|ref|YP_008376080.1|	-	0.0021	17.3	0.2	1.4	8.0	0.0	2.3	2	0	0	2	2	2	2	Archaeal	transcriptional	regulator	TrmB
PP_kinase_C	PF13090.6	gi|529077077|ref|YP_008376080.1|	-	0.023	14.2	0.0	2.5	7.5	0.0	2.3	2	0	0	2	2	2	0	Polyphosphate	kinase	C-terminal	domain	2
FAM83	PF07894.12	gi|529077077|ref|YP_008376080.1|	-	0.024	14.2	0.0	0.26	10.8	0.0	2.1	2	0	0	2	2	2	0	FAM83	A-H
HEAT_2	PF13646.6	gi|529077078|ref|YP_008376081.1|	-	1.4e-23	83.1	18.3	5.3e-12	46.0	8.5	4.2	3	1	2	5	5	5	3	HEAT	repeats
HEAT_PBS	PF03130.16	gi|529077078|ref|YP_008376081.1|	-	4.7e-15	54.7	16.8	6.3e-05	23.3	0.6	6.0	6	1	0	6	6	6	4	PBS	lyase	HEAT-like	repeat
HEAT	PF02985.22	gi|529077078|ref|YP_008376081.1|	-	7.4e-07	28.9	2.2	0.0085	16.3	0.1	4.2	4	0	0	4	4	4	2	HEAT	repeat
HEAT_EZ	PF13513.6	gi|529077078|ref|YP_008376081.1|	-	6.2e-06	26.6	4.8	0.035	14.6	0.1	3.7	3	0	0	3	3	3	2	HEAT-like	repeat
Arm	PF00514.23	gi|529077078|ref|YP_008376081.1|	-	0.00024	21.0	0.3	1.4	9.1	0.0	3.5	2	1	1	3	3	3	1	Armadillo/beta-catenin-like	repeat
Ribonucleas_3_2	PF11469.8	gi|529077078|ref|YP_008376081.1|	-	0.036	14.5	0.3	0.087	13.2	0.3	1.7	1	0	0	1	1	1	0	Ribonuclease	III
XhlA	PF10779.9	gi|529077078|ref|YP_008376081.1|	-	0.065	13.4	1.5	0.13	12.5	0.4	2.1	2	0	0	2	2	2	0	Haemolysin	XhlA
Sugarporin_N	PF11471.8	gi|529077078|ref|YP_008376081.1|	-	0.11	12.5	7.9	0.3	11.1	3.1	2.8	1	1	1	2	2	2	0	Maltoporin	periplasmic	N-terminal	extension
Adaptin_N	PF01602.20	gi|529077078|ref|YP_008376081.1|	-	0.16	10.5	0.0	0.49	8.9	0.0	1.6	1	1	1	2	2	2	0	Adaptin	N	terminal	region
CDP-OH_P_transf	PF01066.21	gi|529077079|ref|YP_008376082.1|	-	3.8e-11	43.6	2.3	3.8e-11	43.6	2.3	2.5	2	1	0	2	2	2	1	CDP-alcohol	phosphatidyltransferase
Cyt_bd_oxida_II	PF02322.15	gi|529077079|ref|YP_008376082.1|	-	0.00035	20.0	10.7	0.00035	20.0	10.7	1.7	1	1	1	2	2	2	1	Cytochrome	bd	terminal	oxidase	subunit	II
Copper-bind	PF00127.20	gi|529077080|ref|YP_008376083.1|	-	1.4e-11	44.7	0.0	2.3e-11	44.0	0.0	1.3	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|529077080|ref|YP_008376083.1|	-	0.00029	20.9	0.0	0.37	10.9	0.0	2.1	2	0	0	2	2	2	2	Cupredoxin-like	domain
TAT_signal	PF10518.9	gi|529077080|ref|YP_008376083.1|	-	0.049	13.5	8.7	0.13	12.1	8.7	1.8	1	1	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PKD	PF00801.20	gi|529077080|ref|YP_008376083.1|	-	0.8	9.6	6.3	2.2	8.2	1.0	2.3	1	1	1	2	2	2	0	PKD	domain
Ribosomal_S3Ae	PF01015.18	gi|529077081|ref|YP_008376084.1|	-	3e-60	203.3	0.1	3.7e-60	203.0	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	S3Ae	family
DUF2399	PF09664.10	gi|529077081|ref|YP_008376084.1|	-	0.033	14.1	0.4	0.059	13.3	0.4	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	C-terminus	(DUF2399)
OSCP	PF00213.18	gi|529077082|ref|YP_008376085.1|	-	0.014	15.5	0.0	0.016	15.3	0.0	1.1	1	0	0	1	1	1	0	ATP	synthase	delta	(OSCP)	subunit
Pcc1	PF09341.10	gi|529077082|ref|YP_008376085.1|	-	0.067	13.3	2.4	0.085	13.0	2.4	1.1	1	0	0	1	1	1	0	Transcription	factor	Pcc1
TPR_14	PF13428.6	gi|529077083|ref|YP_008376086.1|	-	0.012	16.3	0.2	0.012	16.3	0.2	5.0	5	2	0	5	5	5	0	Tetratricopeptide	repeat
DUF348	PF03990.14	gi|529077083|ref|YP_008376086.1|	-	0.7	9.7	7.9	1.4	8.7	0.1	4.4	5	0	0	5	5	5	0	G5-linked-Ubiquitin-like	domain
Ribosomal_S15	PF00312.22	gi|529077084|ref|YP_008376087.1|	-	5.3e-14	52.2	0.1	7.7e-14	51.7	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S15
Ribosomal_S13_N	PF08069.12	gi|529077084|ref|YP_008376087.1|	-	2.5e-12	46.6	0.0	3.9e-12	46.0	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	S13/S15	N-terminal	domain
Asn_synthase	PF00733.21	gi|529077085|ref|YP_008376088.1|	-	6.8e-28	98.3	6.7	6.8e-16	58.9	2.5	2.1	1	1	1	2	2	2	2	Asparagine	synthase
NAD_synthase	PF02540.17	gi|529077085|ref|YP_008376088.1|	-	0.1	11.7	0.0	0.16	11.0	0.0	1.3	1	0	0	1	1	1	0	NAD	synthase
PHP_C	PF13263.6	gi|529077086|ref|YP_008376089.1|	-	1.1e-22	79.6	0.4	3.8e-22	77.8	0.4	1.9	2	0	0	2	2	2	1	PHP-associated
PHP	PF02811.19	gi|529077086|ref|YP_008376089.1|	-	9.3e-08	32.5	0.0	9.3e-08	32.5	0.0	1.2	1	0	0	1	1	1	1	PHP	domain
Radical_SAM	PF04055.21	gi|529077087|ref|YP_008376090.1|	-	4e-17	63.1	0.9	1.9e-16	60.9	0.1	2.2	1	1	2	3	3	3	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|529077087|ref|YP_008376090.1|	-	1.1e-06	28.9	0.0	2.4e-06	27.9	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.6	gi|529077087|ref|YP_008376090.1|	-	8e-06	26.3	0.0	2.2e-05	24.9	0.0	1.7	2	0	0	2	2	2	1	Iron-sulfur	cluster-binding	domain
Fer4_14	PF13394.6	gi|529077087|ref|YP_008376090.1|	-	0.017	15.3	0.0	0.038	14.1	0.0	1.6	1	0	0	1	1	1	0	4Fe-4S	single	cluster	domain
DUF1024	PF06260.12	gi|529077087|ref|YP_008376090.1|	-	0.2	12.0	0.3	0.93	9.8	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1024)
PaaB	PF06243.11	gi|529077088|ref|YP_008376091.1|	-	9.9e-09	35.3	0.0	1.5e-08	34.7	0.0	1.2	1	0	0	1	1	1	1	Phenylacetic	acid	degradation	B
Rubredoxin	PF00301.20	gi|529077088|ref|YP_008376091.1|	-	0.065	13.3	0.0	0.097	12.7	0.0	1.3	1	0	0	1	1	1	0	Rubredoxin
HTH_20	PF12840.7	gi|529077089|ref|YP_008376092.1|	-	1e-11	44.7	0.2	2.3e-11	43.6	0.1	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|529077089|ref|YP_008376092.1|	-	1.8e-05	24.4	0.5	3.5e-05	23.5	0.0	1.6	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|529077089|ref|YP_008376092.1|	-	0.0014	18.5	0.0	0.0025	17.7	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
FUR	PF01475.19	gi|529077089|ref|YP_008376092.1|	-	0.032	14.4	0.0	0.038	14.1	0.0	1.3	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
DUF4199	PF13858.6	gi|529077090|ref|YP_008376093.1|	-	0.59	10.5	7.0	0.12	12.8	3.8	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4199)
COX14	PF14880.6	gi|529077090|ref|YP_008376093.1|	-	2	8.3	5.6	2.2	8.2	0.4	2.2	2	0	0	2	2	2	0	Cytochrome	oxidase	c	assembly
Copper-bind	PF00127.20	gi|529077092|ref|YP_008376095.1|	-	9.2e-13	48.5	0.0	3.8e-12	46.5	0.0	1.9	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|529077092|ref|YP_008376095.1|	-	0.02	15.0	0.0	0.035	14.2	0.0	1.4	1	1	0	1	1	1	0	Cupredoxin-like	domain
GerPC	PF10737.9	gi|529077093|ref|YP_008376096.1|	-	0.0011	19.0	0.5	0.0015	18.7	0.5	1.2	1	0	0	1	1	1	1	Spore	germination	protein	GerPC
PIN_8	PF18476.1	gi|529077093|ref|YP_008376096.1|	-	0.014	15.2	2.3	0.018	14.9	2.3	1.1	1	0	0	1	1	1	0	PIN	like	domain
Minor_tail_Z	PF06763.11	gi|529077093|ref|YP_008376096.1|	-	0.029	14.2	2.6	3.1	7.6	0.2	2.1	1	1	1	2	2	2	0	Prophage	minor	tail	protein	Z	(GPZ)
DUF826	PF05696.11	gi|529077093|ref|YP_008376096.1|	-	0.032	14.3	10.0	1.7	8.8	3.0	2.9	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF826)
DUF445	PF04286.12	gi|529077093|ref|YP_008376096.1|	-	0.12	12.2	3.6	0.18	11.6	3.6	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF445)
EnY2	PF10163.9	gi|529077093|ref|YP_008376096.1|	-	0.17	12.2	8.4	1.4	9.4	1.4	2.6	1	1	1	2	2	2	0	Transcription	factor	e(y)2
YpjP	PF14005.6	gi|529077093|ref|YP_008376096.1|	-	0.2	11.7	4.5	0.5	10.4	4.5	1.6	1	1	0	1	1	1	0	YpjP-like	protein
MethyTransf_Reg	PF10119.9	gi|529077093|ref|YP_008376096.1|	-	0.57	10.9	4.0	12	6.7	0.3	2.2	1	1	1	2	2	2	0	Predicted	methyltransferase	regulatory	domain
WASH-7_mid	PF14744.6	gi|529077093|ref|YP_008376096.1|	-	0.72	8.9	2.5	4	6.4	1.8	1.7	1	1	1	2	2	2	0	WASH	complex	subunit	7
CcdA	PF07362.12	gi|529077093|ref|YP_008376096.1|	-	1.3	9.5	6.4	3.8	8.0	0.7	2.2	1	1	1	2	2	2	0	Post-segregation	antitoxin	CcdA
COMPASS-Shg1	PF05205.12	gi|529077093|ref|YP_008376096.1|	-	2.9	8.7	5.7	7	7.4	5.7	1.6	1	1	0	1	1	1	0	COMPASS	(Complex	proteins	associated	with	Set1p)	component	shg1
Spore_II_R	PF09551.10	gi|529077093|ref|YP_008376096.1|	-	3.1	8.3	5.1	5.3	7.5	5.1	1.5	1	1	0	1	1	1	0	Stage	II	sporulation	protein	R	(spore_II_R)
Peptidase_M29	PF02073.15	gi|529077094|ref|YP_008376097.1|	-	6.3e-60	203.1	0.0	7.5e-60	202.8	0.0	1.0	1	0	0	1	1	1	1	Thermophilic	metalloprotease	(M29)
ParE_toxin	PF05016.15	gi|529077095|ref|YP_008376098.1|	-	0.00097	19.7	0.1	0.0017	18.9	0.1	1.4	1	1	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
Gp49	PF05973.14	gi|529077095|ref|YP_008376098.1|	-	0.087	13.0	0.0	0.11	12.6	0.0	1.2	1	0	0	1	1	1	0	Phage	derived	protein	Gp49-like	(DUF891)
ILVD_EDD	PF00920.21	gi|529077096|ref|YP_008376099.1|	-	5.2e-210	698.4	0.0	6e-210	698.2	0.0	1.0	1	0	0	1	1	1	1	Dehydratase	family
Helicase_RecD	PF05127.14	gi|529077097|ref|YP_008376100.1|	-	2.7e-48	164.2	0.0	5e-48	163.3	0.0	1.5	1	0	0	1	1	1	1	Helicase
GNAT_acetyltr_2	PF13718.6	gi|529077097|ref|YP_008376100.1|	-	1.9e-42	145.2	0.0	2.4e-25	89.3	0.0	2.2	1	1	1	2	2	2	2	GNAT	acetyltransferase	2
DUF1726	PF08351.11	gi|529077097|ref|YP_008376100.1|	-	1.6e-25	88.8	0.0	4.9e-25	87.3	0.0	1.9	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1726)
AAA_30	PF13604.6	gi|529077097|ref|YP_008376100.1|	-	9.3e-05	22.2	0.6	0.00026	20.8	0.6	1.7	1	0	0	1	1	1	1	AAA	domain
Acetyltransf_10	PF13673.7	gi|529077097|ref|YP_008376100.1|	-	0.0034	17.3	0.0	0.0082	16.1	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|529077097|ref|YP_008376100.1|	-	0.0042	17.5	0.0	0.013	15.9	0.0	1.8	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Ribosomal_L7Ae	PF01248.26	gi|529077098|ref|YP_008376101.1|	-	5.5e-26	90.1	0.0	6.8e-26	89.8	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
PELOTA_1	PF15608.6	gi|529077098|ref|YP_008376101.1|	-	0.00035	20.4	0.0	0.00046	20.0	0.0	1.2	1	0	0	1	1	1	1	PELOTA	RNA	binding	domain
DUF1269	PF06897.12	gi|529077098|ref|YP_008376101.1|	-	0.041	14.2	2.9	1.2	9.5	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1269)
eRF1_3	PF03465.15	gi|529077098|ref|YP_008376101.1|	-	0.062	13.8	0.1	0.063	13.8	0.1	1.2	1	0	0	1	1	1	0	eRF1	domain	3
Ribosomal_S28e	PF01200.18	gi|529077099|ref|YP_008376102.1|	-	9.1e-28	96.0	2.9	1e-27	95.9	2.9	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S28e
Ribosomal_L24e	PF01246.20	gi|529077100|ref|YP_008376103.1|	-	2e-21	75.9	0.0	2.5e-21	75.6	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L24e
zf-FCS	PF06467.14	gi|529077100|ref|YP_008376103.1|	-	0.00035	20.4	1.8	0.00052	19.9	1.8	1.2	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
YHS	PF04945.13	gi|529077100|ref|YP_008376103.1|	-	0.0096	16.0	0.3	0.019	15.1	0.3	1.4	1	0	0	1	1	1	1	YHS	domain
Arc_trans_TRASH	PF08394.10	gi|529077100|ref|YP_008376103.1|	-	0.2	12.0	1.5	0.36	11.2	1.5	1.4	1	1	0	1	1	1	0	Archaeal	TRASH	domain
Tub_N	PF16322.5	gi|529077100|ref|YP_008376103.1|	-	0.79	10.1	12.0	0.91	9.9	12.0	1.1	1	0	0	1	1	1	0	Tubby	N-terminal
NDK	PF00334.19	gi|529077101|ref|YP_008376104.1|	-	1.5e-55	186.9	0.0	1.7e-55	186.7	0.0	1.0	1	0	0	1	1	1	1	Nucleoside	diphosphate	kinase
Usp	PF00582.26	gi|529077102|ref|YP_008376105.1|	-	4.5e-37	127.7	1.6	5.1e-37	127.5	1.6	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Amidohydro_1	PF01979.20	gi|529077103|ref|YP_008376106.1|	-	1.7e-29	103.3	0.4	2.5e-20	73.1	0.1	2.1	1	1	1	2	2	2	2	Amidohydrolase	family
A_deaminase	PF00962.22	gi|529077103|ref|YP_008376106.1|	-	2.6e-07	30.3	0.0	3.7e-07	29.8	0.0	1.2	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
HD	PF01966.22	gi|529077104|ref|YP_008376107.1|	-	7.2e-11	42.4	3.6	2e-10	41.0	3.6	1.8	1	0	0	1	1	1	1	HD	domain
Clp_N	PF02861.20	gi|529077104|ref|YP_008376107.1|	-	0.005	16.9	1.7	4.1	7.6	0.0	4.0	4	0	0	4	4	4	2	Clp	amino	terminal	domain,	pathogenicity	island	component
MCH	PF02289.16	gi|529077104|ref|YP_008376107.1|	-	0.065	12.5	0.1	0.1	11.9	0.1	1.2	1	0	0	1	1	1	0	Cyclohydrolase	(MCH)
DSPc	PF00782.20	gi|529077105|ref|YP_008376108.1|	-	0.0019	18.0	0.0	0.0026	17.6	0.0	1.3	1	0	0	1	1	1	1	Dual	specificity	phosphatase,	catalytic	domain
Y_phosphatase	PF00102.27	gi|529077105|ref|YP_008376108.1|	-	0.03	13.9	0.0	0.043	13.4	0.0	1.1	1	0	0	1	1	1	0	Protein-tyrosine	phosphatase
Arabinose_trans	PF04602.12	gi|529077105|ref|YP_008376108.1|	-	0.17	10.6	0.0	0.22	10.3	0.0	1.1	1	0	0	1	1	1	0	Mycobacterial	cell	wall	arabinan	synthesis	protein
UPF0052	PF01933.18	gi|529077106|ref|YP_008376109.1|	-	7.9e-48	163.2	0.0	1e-47	162.8	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0052
Dus	PF01207.17	gi|529077107|ref|YP_008376110.1|	-	1.1e-09	37.8	1.5	6.1e-09	35.4	1.5	1.9	1	1	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
His_biosynth	PF00977.21	gi|529077107|ref|YP_008376110.1|	-	0.00013	21.5	0.2	0.013	15.0	0.0	2.1	1	1	1	2	2	2	2	Histidine	biosynthesis	protein
NMO	PF03060.15	gi|529077107|ref|YP_008376110.1|	-	0.006	16.0	0.5	0.014	14.8	0.2	1.7	2	1	0	2	2	2	1	Nitronate	monooxygenase
QRPTase_C	PF01729.19	gi|529077107|ref|YP_008376110.1|	-	0.0065	16.3	0.3	0.011	15.5	0.3	1.3	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
PEP_mutase	PF13714.6	gi|529077107|ref|YP_008376110.1|	-	0.0066	15.9	3.3	0.0099	15.4	3.3	1.2	1	0	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
Radical_SAM	PF04055.21	gi|529077107|ref|YP_008376110.1|	-	0.043	14.2	0.1	3.9	7.8	0.1	2.9	1	1	1	2	2	2	0	Radical	SAM	superfamily
G3P_antiterm	PF04309.12	gi|529077107|ref|YP_008376110.1|	-	0.077	12.4	0.0	0.13	11.7	0.0	1.3	1	0	0	1	1	1	0	Glycerol-3-phosphate	responsive	antiterminator
IGPS	PF00218.21	gi|529077107|ref|YP_008376110.1|	-	0.13	11.4	0.0	0.7	9.0	0.0	2.0	1	1	1	2	2	2	0	Indole-3-glycerol	phosphate	synthase
Ribul_P_3_epim	PF00834.19	gi|529077107|ref|YP_008376110.1|	-	0.14	11.5	0.2	0.3	10.4	0.1	1.5	1	1	0	1	1	1	0	Ribulose-phosphate	3	epimerase	family
CitG	PF01874.16	gi|529077108|ref|YP_008376111.1|	-	4.9e-65	220.0	2.5	5.5e-65	219.8	2.5	1.0	1	0	0	1	1	1	1	ATP:dephospho-CoA	triphosphoribosyl	transferase
DUF447	PF04289.12	gi|529077109|ref|YP_008376112.1|	-	9.2e-43	146.0	0.0	1.1e-42	145.8	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF447)
Ribosomal_S17e	PF00833.18	gi|529077110|ref|YP_008376113.1|	-	4.9e-14	52.3	0.0	5.8e-14	52.1	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	S17
Semialdhyde_dhC	PF02774.18	gi|529077112|ref|YP_008376115.1|	-	7.1e-32	111.0	0.0	9.7e-32	110.5	0.0	1.2	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
Semialdhyde_dh	PF01118.24	gi|529077112|ref|YP_008376115.1|	-	5.9e-26	91.3	0.0	1.4e-25	90.1	0.0	1.6	2	0	0	2	2	2	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Gp_dh_C	PF02800.20	gi|529077112|ref|YP_008376115.1|	-	0.021	14.4	0.0	0.29	10.7	0.0	2.2	2	0	0	2	2	2	0	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
Frag1	PF10277.9	gi|529077113|ref|YP_008376116.1|	-	0.036	13.6	0.7	0.06	12.9	0.7	1.4	1	1	0	1	1	1	0	Frag1/DRAM/Sfk1	family
2-Hacid_dh_C	PF02826.19	gi|529077114|ref|YP_008376117.1|	-	1.1e-52	178.0	0.0	1.4e-52	177.6	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|529077114|ref|YP_008376117.1|	-	1.5e-14	53.8	0.0	2e-14	53.4	0.0	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
ThiF	PF00899.21	gi|529077114|ref|YP_008376117.1|	-	0.038	13.3	0.0	0.062	12.7	0.0	1.3	1	0	0	1	1	1	0	ThiF	family
TrkA_N	PF02254.18	gi|529077114|ref|YP_008376117.1|	-	0.041	14.2	0.4	0.24	11.7	0.2	2.3	3	0	0	3	3	3	0	TrkA-N	domain
DUF4440	PF14534.6	gi|529077114|ref|YP_008376117.1|	-	0.11	12.9	0.0	1.4	9.3	0.0	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4440)
Response_reg	PF00072.24	gi|529077115|ref|YP_008376118.1|	-	3.7e-16	59.3	0.0	5.6e-16	58.7	0.0	1.3	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HalX	PF08663.10	gi|529077115|ref|YP_008376118.1|	-	6.4e-11	42.4	0.1	1.1e-10	41.6	0.1	1.4	1	0	0	1	1	1	1	HalX	domain
DAO	PF01266.24	gi|529077116|ref|YP_008376119.1|	-	2.2e-12	47.2	3.4	3.3e-07	30.2	0.2	2.3	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|529077116|ref|YP_008376119.1|	-	2.4e-11	43.4	1.7	9.3e-06	25.1	0.6	3.1	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|529077116|ref|YP_008376119.1|	-	3.6e-07	29.8	2.0	0.0015	17.8	0.4	2.3	2	0	0	2	2	2	2	FAD	binding	domain
HI0933_like	PF03486.14	gi|529077116|ref|YP_008376119.1|	-	3.1e-06	26.2	1.2	0.0035	16.1	1.9	2.3	2	0	0	2	2	2	2	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|529077116|ref|YP_008376119.1|	-	0.00012	21.6	5.1	0.00012	21.6	5.1	2.4	2	2	1	3	3	3	1	FAD	dependent	oxidoreductase
Trp_halogenase	PF04820.14	gi|529077116|ref|YP_008376119.1|	-	0.00018	20.5	1.1	0.011	14.6	0.0	2.1	2	0	0	2	2	2	1	Tryptophan	halogenase
NAD_binding_8	PF13450.6	gi|529077116|ref|YP_008376119.1|	-	0.00031	20.9	0.5	0.00031	20.9	0.5	2.1	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.24	gi|529077116|ref|YP_008376119.1|	-	0.00098	18.3	3.3	0.002	17.3	3.3	1.5	1	0	0	1	1	1	1	FAD	binding	domain
GIDA	PF01134.22	gi|529077116|ref|YP_008376119.1|	-	0.0013	17.9	0.9	0.0028	16.8	0.9	1.5	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
NAD_binding_9	PF13454.6	gi|529077116|ref|YP_008376119.1|	-	0.0067	16.4	1.3	0.27	11.2	0.0	2.5	2	0	0	2	2	2	1	FAD-NAD(P)-binding
AlaDh_PNT_C	PF01262.21	gi|529077116|ref|YP_008376119.1|	-	0.0088	15.4	1.4	0.0088	15.4	1.4	1.9	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Thi4	PF01946.17	gi|529077116|ref|YP_008376119.1|	-	0.13	11.5	0.2	0.26	10.5	0.2	1.4	1	0	0	1	1	1	0	Thi4	family
Pyr_redox	PF00070.27	gi|529077116|ref|YP_008376119.1|	-	0.13	12.8	0.1	1.5	9.5	0.2	2.4	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_7	PF13241.6	gi|529077116|ref|YP_008376119.1|	-	0.18	12.3	0.0	0.43	11.0	0.0	1.8	2	0	0	2	2	2	0	Putative	NAD(P)-binding
Acetyltransf_1	PF00583.25	gi|529077117|ref|YP_008376120.1|	-	1.5e-17	63.9	0.0	1.7e-17	63.7	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|529077117|ref|YP_008376120.1|	-	1.7e-11	44.3	0.0	2.4e-11	43.9	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|529077117|ref|YP_008376120.1|	-	2.4e-11	43.7	0.0	3e-11	43.4	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|529077117|ref|YP_008376120.1|	-	2e-08	34.4	0.0	2.4e-08	34.1	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|529077117|ref|YP_008376120.1|	-	5.8e-05	23.0	0.0	0.00011	22.1	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_4	PF13420.7	gi|529077117|ref|YP_008376120.1|	-	0.035	14.2	0.0	0.045	13.9	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
PanZ	PF12568.8	gi|529077117|ref|YP_008376120.1|	-	0.05	13.3	0.1	0.06	13.1	0.1	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain,	PanZ
Acetyltransf_CG	PF14542.6	gi|529077117|ref|YP_008376120.1|	-	0.12	12.5	0.0	0.23	11.6	0.0	1.4	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Acetyltransf_13	PF13880.6	gi|529077117|ref|YP_008376120.1|	-	0.17	11.9	0.0	0.32	11.0	0.0	1.4	1	0	0	1	1	1	0	ESCO1/2	acetyl-transferase
Glyco_trans_1_4	PF13692.6	gi|529077118|ref|YP_008376121.1|	-	1.7e-13	51.2	0.0	5.1e-13	49.6	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|529077118|ref|YP_008376121.1|	-	8.8e-12	44.9	0.0	2.1e-11	43.7	0.0	1.7	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|529077118|ref|YP_008376121.1|	-	1.3e-11	44.8	0.3	2.9e-11	43.7	0.1	1.7	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|529077118|ref|YP_008376121.1|	-	2.9e-07	31.1	0.1	9.1e-07	29.5	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|529077118|ref|YP_008376121.1|	-	0.0003	21.1	0.0	0.00069	20.0	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
TatD_DNase	PF01026.21	gi|529077118|ref|YP_008376121.1|	-	0.18	11.1	0.0	0.29	10.5	0.0	1.3	1	0	0	1	1	1	0	TatD	related	DNase
eIF-5_eIF-2B	PF01873.17	gi|529077119|ref|YP_008376122.1|	-	1.6e-31	108.6	0.0	2.2e-31	108.2	0.0	1.2	1	0	0	1	1	1	1	Domain	found	in	IF2B/IF5
TRAM	PF01938.20	gi|529077119|ref|YP_008376122.1|	-	1.7e-07	31.1	0.6	2.5e-07	30.6	0.6	1.3	1	0	0	1	1	1	1	TRAM	domain
Lar_restr_allev	PF14354.6	gi|529077119|ref|YP_008376122.1|	-	0.072	13.5	0.2	0.17	12.3	0.2	1.6	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
zinc_ribbon_12	PF11331.8	gi|529077119|ref|YP_008376122.1|	-	0.096	12.5	0.2	0.18	11.6	0.2	1.4	1	0	0	1	1	1	0	Probable	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.13	gi|529077119|ref|YP_008376122.1|	-	0.67	9.7	2.5	5.6	6.7	3.0	2.0	1	1	1	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Serpin	PF00079.20	gi|529077120|ref|YP_008376123.1|	-	4.6e-102	342.1	0.0	5.2e-102	341.9	0.0	1.0	1	0	0	1	1	1	1	Serpin	(serine	protease	inhibitor)
KH_2	PF07650.17	gi|529077121|ref|YP_008376124.1|	-	7.6e-16	57.7	0.1	9.8e-11	41.3	0.2	2.1	2	0	0	2	2	2	2	KH	domain
KH_5	PF13184.6	gi|529077121|ref|YP_008376124.1|	-	1.3e-11	44.4	0.0	1.3e-10	41.2	0.0	2.2	2	0	0	2	2	2	1	NusA-like	KH	domain
KH_4	PF13083.6	gi|529077121|ref|YP_008376124.1|	-	6.5e-08	32.3	0.8	0.0086	15.9	0.5	2.2	2	0	0	2	2	2	2	KH	domain
KH_1	PF00013.29	gi|529077121|ref|YP_008376124.1|	-	0.0025	17.6	0.1	0.013	15.3	0.0	2.1	1	1	1	2	2	2	1	KH	domain
RNA_pol_Rpb1_5	PF04998.17	gi|529077122|ref|YP_008376125.1|	-	3.3e-45	154.6	1.0	4e-37	128.1	0.3	2.2	2	0	0	2	2	2	2	RNA	polymerase	Rpb1,	domain	5
Intein_splicing	PF14890.6	gi|529077122|ref|YP_008376125.1|	-	1.1e-18	67.5	0.0	2.1e-18	66.6	0.0	1.5	1	0	0	1	1	1	1	Intein	splicing	domain
LAGLIDADG_3	PF14528.6	gi|529077122|ref|YP_008376125.1|	-	3.1e-14	53.1	0.1	9.7e-09	35.4	0.0	2.7	2	0	0	2	2	2	2	LAGLIDADG-like	domain
DUF4226	PF10774.9	gi|529077122|ref|YP_008376125.1|	-	0.0083	16.4	0.6	0.056	13.7	0.2	2.5	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4226)
HHH_4	PF14490.6	gi|529077122|ref|YP_008376125.1|	-	0.064	13.2	0.0	0.4	10.7	0.0	2.3	2	0	0	2	2	2	0	Helix-hairpin-helix	containing	domain
DraK_HK_N	PF18092.1	gi|529077122|ref|YP_008376125.1|	-	0.23	11.9	13.8	16	6.0	0.4	4.3	3	1	0	3	3	3	0	DraK	Histidine	Kinase	N-terminal	domain
HalOD1	PF18545.1	gi|529077122|ref|YP_008376125.1|	-	2.7	8.3	6.3	15	6.0	0.3	3.4	2	1	0	2	2	2	0	Halobacterial	output	domain	1
RNA_pol_Rpb1_1	PF04997.12	gi|529077123|ref|YP_008376126.1|	-	2.5e-104	349.0	0.0	5.7e-104	347.8	0.0	1.6	1	1	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	1
RNA_pol_Rpb1_2	PF00623.20	gi|529077123|ref|YP_008376126.1|	-	7.9e-68	227.9	0.2	1.3e-67	227.2	0.2	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	2
RNA_pol_Rpb1_4	PF05000.17	gi|529077123|ref|YP_008376126.1|	-	2.3e-31	107.9	0.0	5e-31	106.8	0.0	1.6	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	4
RNA_pol_Rpb1_3	PF04983.18	gi|529077123|ref|YP_008376126.1|	-	5.8e-30	104.3	0.0	9.1e-30	103.7	0.0	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	3
RNA_pol_Rpb1_5	PF04998.17	gi|529077123|ref|YP_008376126.1|	-	4.3e-26	91.9	0.0	7.5e-26	91.1	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
DnaJ-X	PF14308.6	gi|529077123|ref|YP_008376126.1|	-	0.19	11.1	0.0	0.43	10.0	0.0	1.5	1	0	0	1	1	1	0	X-domain	of	DnaJ-containing
HisKA_3	PF07730.13	gi|529077123|ref|YP_008376126.1|	-	0.3	11.6	1.9	4.8	7.8	0.7	3.4	3	0	0	3	3	3	0	Histidine	kinase
RNA_pol_Rpb2_6	PF00562.28	gi|529077124|ref|YP_008376127.1|	-	1.3e-128	429.4	0.0	1.9e-128	428.9	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	6
RNA_pol_Rpb2_7	PF04560.20	gi|529077124|ref|YP_008376127.1|	-	1.6e-29	102.2	0.1	2.7e-29	101.4	0.1	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	7
RNA_pol_Rpb2_4	PF04566.13	gi|529077124|ref|YP_008376127.1|	-	1.6e-20	73.1	0.3	2.9e-20	72.3	0.3	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	4
RNA_pol_Rpb2_5	PF04567.17	gi|529077124|ref|YP_008376127.1|	-	6.3e-09	36.3	3.3	2.5e-08	34.4	3.3	2.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	5
NOB1_Zn_bind	PF08772.11	gi|529077124|ref|YP_008376127.1|	-	0.0027	17.8	0.2	0.0056	16.8	0.2	1.5	1	0	0	1	1	1	1	Nin	one	binding	(NOB1)	Zn-ribbon	like
OrfB_Zn_ribbon	PF07282.11	gi|529077124|ref|YP_008376127.1|	-	0.0063	16.4	2.0	0.012	15.5	2.0	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
zf-NADH-PPase	PF09297.11	gi|529077124|ref|YP_008376127.1|	-	0.072	12.8	3.6	0.079	12.6	2.0	2.0	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
DZR	PF12773.7	gi|529077124|ref|YP_008376127.1|	-	0.089	12.8	0.6	0.16	12.1	0.6	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
Auto_anti-p27	PF06677.12	gi|529077124|ref|YP_008376127.1|	-	1.1	9.4	3.1	2	8.6	3.1	1.4	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-ribbon_3	PF13248.6	gi|529077124|ref|YP_008376127.1|	-	2.8	7.5	4.0	1.6	8.2	0.2	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|529077124|ref|YP_008376127.1|	-	3.4	7.5	6.2	20	5.1	6.2	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
RNA_pol_Rpb2_1	PF04563.15	gi|529077125|ref|YP_008376128.1|	-	1.1e-49	168.7	0.1	1.4e-49	168.4	0.1	1.1	1	0	0	1	1	1	1	RNA	polymerase	beta	subunit
RNA_pol_Rpb2_2	PF04561.14	gi|529077125|ref|YP_008376128.1|	-	5.1e-28	98.0	0.1	8.7e-28	97.2	0.1	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	2
RNA_pol_Rpb2_3	PF04565.16	gi|529077125|ref|YP_008376128.1|	-	1.5e-24	86.0	0.0	3.1e-24	84.9	0.0	1.6	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	3
RNA_pol_Rpb5_C	PF01191.19	gi|529077126|ref|YP_008376129.1|	-	4.6e-24	84.1	0.2	5.1e-24	83.9	0.2	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb5,	C-terminal	domain
DUF3006	PF11213.8	gi|529077126|ref|YP_008376129.1|	-	0.059	13.6	0.7	1.8	8.9	0.1	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3006)
zf-ribbon_3	PF13248.6	gi|529077127|ref|YP_008376130.1|	-	1.8e-06	27.1	0.7	3.5e-06	26.2	0.7	1.5	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|529077127|ref|YP_008376130.1|	-	2e-06	27.7	0.2	2.7e-06	27.3	0.2	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|529077127|ref|YP_008376130.1|	-	7.9e-06	25.4	1.7	1.3e-05	24.7	1.7	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|529077127|ref|YP_008376130.1|	-	0.066	14.0	2.0	0.089	13.5	2.0	1.2	1	0	0	1	1	1	0	zinc-ribbon	family
SKA2	PF16740.5	gi|529077128|ref|YP_008376131.1|	-	0.0094	15.7	0.1	2.1	8.1	0.3	2.7	2	1	1	3	3	3	1	Spindle	and	kinetochore-associated	protein	2
Phage_GP20	PF06810.11	gi|529077128|ref|YP_008376131.1|	-	0.014	15.2	0.1	2.3	8.0	0.0	2.2	2	0	0	2	2	2	0	Phage	minor	structural	protein	GP20
Rab5-bind	PF09311.11	gi|529077128|ref|YP_008376131.1|	-	0.017	14.5	0.2	0.033	13.6	0.2	1.4	1	0	0	1	1	1	0	Rabaptin-like	protein
Dor1	PF04124.12	gi|529077128|ref|YP_008376131.1|	-	0.047	12.4	0.3	4.5	5.8	0.0	2.1	2	0	0	2	2	2	0	Dor1-like	family
APG6_N	PF17675.1	gi|529077128|ref|YP_008376131.1|	-	0.049	14.2	0.5	0.049	14.2	0.5	1.7	2	0	0	2	2	2	0	Apg6	coiled-coil	region
HalX	PF08663.10	gi|529077128|ref|YP_008376131.1|	-	0.051	13.9	8.0	0.051	13.9	8.0	2.8	3	0	0	3	3	3	0	HalX	domain
DUF4140	PF13600.6	gi|529077128|ref|YP_008376131.1|	-	0.078	13.4	0.1	0.078	13.4	0.1	2.1	3	0	0	3	3	3	0	N-terminal	domain	of	unknown	function	(DUF4140)
DivIC	PF04977.15	gi|529077128|ref|YP_008376131.1|	-	1	9.2	5.5	0.26	11.1	2.0	1.8	2	0	0	2	2	2	0	Septum	formation	initiator
FUSC	PF04632.12	gi|529077128|ref|YP_008376131.1|	-	1.4	7.4	3.8	1.3	7.5	0.7	1.9	2	0	0	2	2	2	0	Fusaric	acid	resistance	protein	family
Pup	PF05639.11	gi|529077128|ref|YP_008376131.1|	-	2.5	9.1	5.7	5.1	8.1	3.2	2.5	2	1	0	2	2	2	0	Pup-like	protein
DUF2312	PF10073.9	gi|529077128|ref|YP_008376131.1|	-	4.7	6.9	6.3	1.6	8.4	2.7	2.0	3	0	0	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2312)
ABC2_membrane	PF01061.24	gi|529077129|ref|YP_008376132.1|	-	4.7e-28	98.0	18.1	4.7e-28	98.0	18.1	1.4	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|529077129|ref|YP_008376132.1|	-	2.2e-20	73.1	20.0	2.2e-20	73.1	20.0	1.3	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|529077129|ref|YP_008376132.1|	-	7.3e-06	25.5	19.3	7.3e-06	25.5	19.3	1.9	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|529077129|ref|YP_008376132.1|	-	0.18	11.8	14.2	0.68	9.9	14.2	2.1	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
MFS_Mycoplasma	PF07672.13	gi|529077129|ref|YP_008376132.1|	-	0.52	9.6	8.2	0.79	8.9	8.2	1.3	1	0	0	1	1	1	0	Mycoplasma	MFS	transporter
ABC_tran	PF00005.27	gi|529077130|ref|YP_008376133.1|	-	4.6e-30	104.9	0.0	6.2e-30	104.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529077130|ref|YP_008376133.1|	-	3.3e-16	60.0	0.3	5.2e-08	33.1	0.0	3.0	2	1	0	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|529077130|ref|YP_008376133.1|	-	1.5e-05	25.6	0.2	2.3e-05	25.0	0.2	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|529077130|ref|YP_008376133.1|	-	0.00059	20.3	0.3	0.0011	19.4	0.2	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
SMC_N	PF02463.19	gi|529077130|ref|YP_008376133.1|	-	0.00072	19.1	0.0	0.048	13.1	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|529077130|ref|YP_008376133.1|	-	0.0041	17.4	0.0	0.012	15.9	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|529077130|ref|YP_008376133.1|	-	0.0078	15.9	0.1	0.015	15.0	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|529077130|ref|YP_008376133.1|	-	0.0079	15.9	0.0	1.3	8.7	0.0	2.2	2	0	0	2	2	2	1	AAA	ATPase	domain
SbcCD_C	PF13558.6	gi|529077130|ref|YP_008376133.1|	-	0.013	15.7	0.1	0.025	14.8	0.1	1.5	1	0	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
cobW	PF02492.19	gi|529077130|ref|YP_008376133.1|	-	0.019	14.6	0.1	0.031	13.8	0.1	1.3	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
Zeta_toxin	PF06414.12	gi|529077130|ref|YP_008376133.1|	-	0.026	13.8	0.1	0.065	12.5	0.0	1.5	1	1	0	1	1	1	0	Zeta	toxin
AAA_30	PF13604.6	gi|529077130|ref|YP_008376133.1|	-	0.046	13.4	0.0	0.061	13.0	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
DUF3584	PF12128.8	gi|529077130|ref|YP_008376133.1|	-	0.11	10.0	0.1	0.14	9.6	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
T2SSE	PF00437.20	gi|529077130|ref|YP_008376133.1|	-	0.11	11.5	0.1	0.19	10.7	0.1	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
MMR_HSR1	PF01926.23	gi|529077130|ref|YP_008376133.1|	-	0.12	12.4	0.0	0.37	10.9	0.0	1.8	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
NACHT	PF05729.12	gi|529077130|ref|YP_008376133.1|	-	0.13	12.1	0.8	0.3	11.0	0.2	1.8	2	0	0	2	2	2	0	NACHT	domain
Adeno_IVa2	PF02456.15	gi|529077130|ref|YP_008376133.1|	-	0.14	10.9	0.0	0.2	10.4	0.0	1.2	1	0	0	1	1	1	0	Adenovirus	IVa2	protein
AAA_33	PF13671.6	gi|529077130|ref|YP_008376133.1|	-	0.14	12.3	0.2	0.37	10.9	0.2	1.7	1	1	0	1	1	1	0	AAA	domain
MobB	PF03205.14	gi|529077130|ref|YP_008376133.1|	-	0.15	12.0	0.2	0.44	10.5	0.1	1.8	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_18	PF13238.6	gi|529077130|ref|YP_008376133.1|	-	0.17	12.4	0.0	0.3	11.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.22	gi|529077130|ref|YP_008376133.1|	-	0.18	11.0	0.0	0.28	10.3	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
HTH_10	PF04967.12	gi|529077131|ref|YP_008376134.1|	-	4.8e-17	61.5	0.0	7.5e-17	60.9	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|529077131|ref|YP_008376134.1|	-	0.0033	17.1	0.4	0.019	14.6	0.1	2.3	2	0	0	2	2	2	1	Sigma-70,	region	4
Sigma70_r4	PF04545.16	gi|529077131|ref|YP_008376134.1|	-	0.006	16.1	0.0	0.013	15.0	0.0	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_23	PF13384.6	gi|529077131|ref|YP_008376134.1|	-	0.0097	15.7	0.0	0.017	14.9	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_20	PF12840.7	gi|529077131|ref|YP_008376134.1|	-	0.024	14.7	0.1	0.061	13.4	0.1	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|529077131|ref|YP_008376134.1|	-	0.058	13.0	0.0	0.14	11.7	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Fe_dep_repress	PF01325.19	gi|529077131|ref|YP_008376134.1|	-	0.084	13.1	0.0	0.21	11.8	0.0	1.6	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Aminotran_5	PF00266.19	gi|529077132|ref|YP_008376135.1|	-	2.6e-56	191.2	0.0	5.7e-56	190.1	0.0	1.5	1	1	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|529077132|ref|YP_008376135.1|	-	0.054	12.0	0.0	0.084	11.4	0.0	1.2	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
Ribosomal_S10	PF00338.22	gi|529077133|ref|YP_008376136.1|	-	4.4e-26	91.0	0.0	4.9e-26	90.8	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
GTP_EFTU	PF00009.27	gi|529077134|ref|YP_008376137.1|	-	1.6e-58	197.4	0.0	2.2e-58	197.0	0.0	1.1	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.17	gi|529077134|ref|YP_008376137.1|	-	1.1e-36	125.5	0.0	3.1e-36	124.1	0.0	1.8	2	0	0	2	2	2	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.25	gi|529077134|ref|YP_008376137.1|	-	2.6e-14	53.3	2.1	2.1e-13	50.4	0.6	2.6	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|529077134|ref|YP_008376137.1|	-	1.8e-07	31.2	0.2	1.2e-06	28.5	0.2	2.3	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
Gtr1_RagA	PF04670.12	gi|529077134|ref|YP_008376137.1|	-	0.00068	19.1	0.1	0.094	12.0	0.0	2.2	2	0	0	2	2	2	1	Gtr1/RagA	G	protein	conserved	region
RsgA_GTPase	PF03193.16	gi|529077134|ref|YP_008376137.1|	-	0.00079	19.4	1.8	0.045	13.7	0.3	2.3	1	1	1	2	2	2	1	RsgA	GTPase
FeoB_N	PF02421.18	gi|529077134|ref|YP_008376137.1|	-	0.006	16.1	0.5	0.16	11.5	0.4	2.7	2	1	0	2	2	2	1	Ferrous	iron	transport	protein	B
SRPRB	PF09439.10	gi|529077134|ref|YP_008376137.1|	-	0.011	15.2	0.0	0.42	10.0	0.0	2.2	1	1	1	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
Septin	PF00735.18	gi|529077134|ref|YP_008376137.1|	-	0.012	14.9	0.1	0.032	13.5	0.1	1.6	1	1	0	1	1	1	0	Septin
Dynamin_N	PF00350.23	gi|529077134|ref|YP_008376137.1|	-	0.017	15.2	0.1	4.9	7.2	0.0	2.3	1	1	1	2	2	2	0	Dynamin	family
Ras	PF00071.22	gi|529077134|ref|YP_008376137.1|	-	0.046	13.3	1.0	0.23	11.0	0.4	2.2	2	1	0	2	2	2	0	Ras	family
GTP_EFTU_D4	PF14578.6	gi|529077134|ref|YP_008376137.1|	-	0.12	12.2	0.3	0.34	10.9	0.3	1.7	1	0	0	1	1	1	0	Elongation	factor	Tu	domain	4
ATP_bind_1	PF03029.17	gi|529077134|ref|YP_008376137.1|	-	0.13	12.0	2.0	0.5	10.1	0.7	2.2	2	1	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
cobW	PF02492.19	gi|529077134|ref|YP_008376137.1|	-	0.14	11.7	0.4	0.6	9.7	0.3	1.9	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
GCH_III	PF05165.12	gi|529077135|ref|YP_008376138.1|	-	0.00073	18.9	0.6	0.0017	17.7	0.1	1.7	1	1	1	2	2	2	1	GTP	cyclohydrolase	III
CdvA	PF18822.1	gi|529077135|ref|YP_008376138.1|	-	0.00097	19.0	0.1	0.0014	18.5	0.1	1.2	1	0	0	1	1	1	1	CdvA-like	coiled-coil	domain
SHOCT	PF09851.9	gi|529077135|ref|YP_008376138.1|	-	0.0017	18.0	3.0	0.0017	18.0	3.0	1.8	2	0	0	2	2	2	1	Short	C-terminal	domain
RhodobacterPufX	PF11511.8	gi|529077135|ref|YP_008376138.1|	-	2.6	7.7	5.8	4.7	6.9	5.8	1.4	1	0	0	1	1	1	0	Intrinsic	membrane	protein	PufX
Homoserine_dh	PF00742.19	gi|529077136|ref|YP_008376139.1|	-	8.6e-47	159.3	0.0	1.6e-46	158.4	0.0	1.4	1	0	0	1	1	1	1	Homoserine	dehydrogenase
NAD_binding_3	PF03447.16	gi|529077136|ref|YP_008376139.1|	-	6.8e-06	26.7	0.4	1.5e-05	25.6	0.4	1.6	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
ELFV_dehydrog	PF00208.21	gi|529077136|ref|YP_008376139.1|	-	2.2e-05	24.3	0.1	3.7e-05	23.6	0.1	1.4	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
DapB_N	PF01113.20	gi|529077136|ref|YP_008376139.1|	-	0.0008	19.5	0.1	0.0016	18.5	0.1	1.5	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
3HCDH_N	PF02737.18	gi|529077136|ref|YP_008376139.1|	-	0.0059	16.5	0.1	0.0093	15.9	0.1	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|529077136|ref|YP_008376139.1|	-	0.056	12.8	0.1	0.087	12.2	0.1	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ACT	PF01842.25	gi|529077137|ref|YP_008376140.1|	-	8.2e-05	22.3	0.5	0.005	16.6	0.0	2.9	3	1	0	3	3	3	1	ACT	domain
PE	PF00934.20	gi|529077137|ref|YP_008376140.1|	-	0.035	14.4	0.4	0.072	13.4	0.4	1.5	1	0	0	1	1	1	0	PE	family
Chorismate_bind	PF00425.18	gi|529077138|ref|YP_008376141.1|	-	2.6e-75	253.3	0.0	3.3e-75	253.0	0.0	1.1	1	0	0	1	1	1	1	chorismate	binding	enzyme
TPP_enzyme_N	PF02776.18	gi|529077139|ref|YP_008376142.1|	-	5.1e-36	123.9	3.0	5.4e-36	123.8	1.1	2.0	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|529077139|ref|YP_008376142.1|	-	2.7e-09	37.0	0.0	6.9e-09	35.7	0.0	1.7	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M_2	PF16582.5	gi|529077139|ref|YP_008376142.1|	-	1e-07	31.8	0.0	1.5e-07	31.4	0.0	1.2	1	0	0	1	1	1	1	Middle	domain	of	thiamine	pyrophosphate
TPP_enzyme_M	PF00205.22	gi|529077139|ref|YP_008376142.1|	-	0.066	13.0	0.0	0.22	11.2	0.0	1.9	2	0	0	2	2	2	0	Thiamine	pyrophosphate	enzyme,	central	domain
DUF4350	PF14258.6	gi|529077139|ref|YP_008376142.1|	-	0.11	12.9	1.4	4.8	7.7	0.0	3.8	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4350)
POR_N	PF01855.19	gi|529077139|ref|YP_008376142.1|	-	0.15	11.8	0.5	0.28	10.9	0.5	1.4	1	0	0	1	1	1	0	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
DnaJ	PF00226.31	gi|529077140|ref|YP_008376143.1|	-	2.5e-16	59.6	0.2	3.4e-16	59.1	0.2	1.2	1	0	0	1	1	1	1	DnaJ	domain
TrmB	PF01978.19	gi|529077141|ref|YP_008376144.1|	-	2.6e-17	62.5	0.0	3.5e-17	62.0	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|529077141|ref|YP_008376144.1|	-	7e-07	29.1	0.0	1.7e-06	27.8	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|529077141|ref|YP_008376144.1|	-	2e-06	27.5	0.0	4e-06	26.5	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Penicillinase_R	PF03965.16	gi|529077141|ref|YP_008376144.1|	-	0.00014	22.2	0.0	0.00018	21.9	0.0	1.2	1	0	0	1	1	1	1	Penicillinase	repressor
MarR_2	PF12802.7	gi|529077141|ref|YP_008376144.1|	-	0.00019	21.3	0.0	0.00028	20.7	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|529077141|ref|YP_008376144.1|	-	0.00032	21.1	0.0	0.00076	19.9	0.0	1.7	1	1	1	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|529077141|ref|YP_008376144.1|	-	0.00055	19.4	0.0	0.00079	18.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|529077141|ref|YP_008376144.1|	-	0.0011	19.0	0.0	0.0022	18.0	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_38	PF13936.6	gi|529077141|ref|YP_008376144.1|	-	0.0015	18.2	0.0	0.0041	16.8	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|529077141|ref|YP_008376144.1|	-	0.0017	18.3	0.0	0.0027	17.6	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_23	PF13384.6	gi|529077141|ref|YP_008376144.1|	-	0.0017	18.1	0.0	0.0055	16.5	0.0	1.8	2	0	0	2	2	2	1	Homeodomain-like	domain
Sigma70_r4_2	PF08281.12	gi|529077141|ref|YP_008376144.1|	-	0.0032	17.1	0.1	0.027	14.2	0.1	2.3	2	1	0	2	2	2	1	Sigma-70,	region	4
RuvB_C	PF05491.13	gi|529077141|ref|YP_008376144.1|	-	0.0033	17.3	0.0	0.0055	16.6	0.0	1.3	1	0	0	1	1	1	1	RuvB	C-terminal	winged	helix	domain
HTH_28	PF13518.6	gi|529077141|ref|YP_008376144.1|	-	0.01	16.0	0.1	0.024	14.8	0.0	1.6	2	0	0	2	2	1	1	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|529077141|ref|YP_008376144.1|	-	0.012	15.6	0.1	0.03	14.3	0.0	1.7	1	1	0	1	1	1	0	Winged	helix-turn	helix
PadR	PF03551.14	gi|529077141|ref|YP_008376144.1|	-	0.016	15.2	0.1	0.039	13.9	0.1	1.7	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Rrf2	PF02082.20	gi|529077141|ref|YP_008376144.1|	-	0.019	15.3	0.0	0.032	14.6	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
Peptidase_S7	PF00949.21	gi|529077141|ref|YP_008376144.1|	-	0.025	14.4	0.0	0.089	12.6	0.0	1.7	1	1	1	2	2	2	0	Peptidase	S7,	Flavivirus	NS3	serine	protease
UMPH-1	PF05822.12	gi|529077141|ref|YP_008376144.1|	-	0.026	14.0	0.0	0.038	13.5	0.0	1.3	1	1	0	1	1	1	0	Pyrimidine	5'-nucleotidase	(UMPH-1)
Dimerisation	PF08100.11	gi|529077141|ref|YP_008376144.1|	-	0.033	14.2	0.0	0.067	13.2	0.0	1.5	1	0	0	1	1	1	0	Dimerisation	domain
HTH_Crp_2	PF13545.6	gi|529077141|ref|YP_008376144.1|	-	0.045	13.7	0.1	0.096	12.7	0.1	1.6	1	1	0	1	1	1	0	Crp-like	helix-turn-helix	domain
DUF4777	PF16007.5	gi|529077141|ref|YP_008376144.1|	-	0.071	13.4	0.2	0.33	11.2	0.2	2.2	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4777)
2OG-Fe_Oxy_2	PF10014.9	gi|529077141|ref|YP_008376144.1|	-	0.082	12.7	0.1	0.1	12.4	0.1	1.1	1	0	0	1	1	1	0	2OG-Fe	dioxygenase
HTH_40	PF14493.6	gi|529077141|ref|YP_008376144.1|	-	0.083	13.4	0.0	0.14	12.6	0.0	1.5	1	1	0	1	1	1	0	Helix-turn-helix	domain
Thioredoxin	PF00085.20	gi|529077142|ref|YP_008376145.1|	-	8.6e-28	96.4	0.0	1.2e-27	95.8	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|529077142|ref|YP_008376145.1|	-	3.9e-10	40.2	0.2	1.2e-08	35.3	0.2	2.2	1	1	0	1	1	1	1	Thioredoxin-like	domain
DSBA	PF01323.20	gi|529077142|ref|YP_008376145.1|	-	4.7e-07	29.8	2.4	5.3e-06	26.3	0.3	2.2	1	1	2	3	3	3	1	DSBA-like	thioredoxin	domain
Thioredoxin_8	PF13905.6	gi|529077142|ref|YP_008376145.1|	-	1.6e-05	25.1	0.0	0.036	14.4	0.0	2.3	1	1	1	2	2	2	2	Thioredoxin-like
Thioredoxin_7	PF13899.6	gi|529077142|ref|YP_008376145.1|	-	2.7e-05	24.3	0.2	5.6e-05	23.2	0.2	1.5	1	0	0	1	1	1	1	Thioredoxin-like
HyaE	PF07449.11	gi|529077142|ref|YP_008376145.1|	-	0.00012	22.0	0.3	0.00032	20.6	0.0	1.8	2	1	0	2	2	2	1	Hydrogenase-1	expression	protein	HyaE
Thioredoxin_9	PF14595.6	gi|529077142|ref|YP_008376145.1|	-	0.00012	21.9	0.3	0.00018	21.2	0.3	1.4	1	1	0	1	1	1	1	Thioredoxin
Thioredoxin_3	PF13192.6	gi|529077142|ref|YP_008376145.1|	-	0.00012	22.0	0.1	0.00022	21.2	0.1	1.5	1	1	1	2	2	2	1	Thioredoxin	domain
Thioredoxin_5	PF13743.6	gi|529077142|ref|YP_008376145.1|	-	0.00018	21.2	0.0	0.0003	20.5	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin
TraF	PF13728.6	gi|529077142|ref|YP_008376145.1|	-	0.00043	20.2	0.2	0.00077	19.3	0.0	1.4	1	1	0	1	1	1	1	F	plasmid	transfer	operon	protein
Glutaredoxin	PF00462.24	gi|529077142|ref|YP_008376145.1|	-	0.0031	17.7	0.1	0.0054	16.9	0.1	1.5	1	0	0	1	1	1	1	Glutaredoxin
DUF836	PF05768.14	gi|529077142|ref|YP_008376145.1|	-	0.0092	16.4	0.0	0.015	15.7	0.0	1.4	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
AhpC-TSA	PF00578.21	gi|529077142|ref|YP_008376145.1|	-	0.01	15.7	0.1	0.046	13.6	0.1	1.9	1	1	0	1	1	1	0	AhpC/TSA	family
OST3_OST6	PF04756.13	gi|529077142|ref|YP_008376145.1|	-	0.038	13.3	0.0	0.04	13.3	0.0	1.1	1	0	0	1	1	1	0	OST3	/	OST6	family,	transporter	family
Redoxin	PF08534.10	gi|529077142|ref|YP_008376145.1|	-	0.094	12.4	0.4	1.2	8.9	0.2	2.1	1	1	1	2	2	2	0	Redoxin
zinc_ribbon_10	PF10058.9	gi|529077143|ref|YP_008376146.1|	-	0.00028	20.5	0.1	0.00036	20.2	0.1	1.2	1	0	0	1	1	1	1	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
PhnA_Zn_Ribbon	PF08274.12	gi|529077143|ref|YP_008376146.1|	-	0.0003	20.7	3.4	0.016	15.1	0.3	2.2	2	0	0	2	2	2	1	PhnA	Zinc-Ribbon
TackOD1	PF18551.1	gi|529077143|ref|YP_008376146.1|	-	0.001	18.8	0.2	0.0011	18.6	0.2	1.1	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
HypA	PF01155.19	gi|529077143|ref|YP_008376146.1|	-	0.0012	18.8	0.4	0.0013	18.7	0.4	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|529077143|ref|YP_008376146.1|	-	0.0019	18.2	0.6	0.0028	17.6	0.6	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
Nudix_N_2	PF14803.6	gi|529077143|ref|YP_008376146.1|	-	0.0021	18.0	1.8	1.5	8.8	0.1	2.2	2	0	0	2	2	2	2	Nudix	N-terminal
zf_UBZ	PF18439.1	gi|529077143|ref|YP_008376146.1|	-	0.0028	17.2	1.7	0.38	10.4	0.1	2.2	2	0	0	2	2	2	1	Ubiquitin-Binding	Zinc	Finger
DUF4379	PF14311.6	gi|529077143|ref|YP_008376146.1|	-	0.0091	16.3	1.4	0.013	15.8	1.4	1.3	1	0	0	1	1	1	1	Probable	Zinc-ribbon	domain
TFIIS_C	PF01096.18	gi|529077143|ref|YP_008376146.1|	-	0.013	15.4	2.7	1.3	8.9	0.4	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Zn_Tnp_IS1595	PF12760.7	gi|529077143|ref|YP_008376146.1|	-	0.021	14.8	4.2	0.32	11.0	4.3	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
CpXC	PF14353.6	gi|529077143|ref|YP_008376146.1|	-	0.028	14.4	2.0	0.35	10.9	0.1	2.1	1	1	2	3	3	3	0	CpXC	protein
zf-H2C2_2	PF13465.6	gi|529077143|ref|YP_008376146.1|	-	0.029	14.8	3.9	0.86	10.2	0.5	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
zinc_ribbon_4	PF13717.6	gi|529077143|ref|YP_008376146.1|	-	0.029	14.3	2.5	0.45	10.5	3.4	2.0	1	1	1	2	2	2	0	zinc-ribbon	domain
zinc-ribbons_6	PF07191.12	gi|529077143|ref|YP_008376146.1|	-	0.037	14.0	1.8	0.077	13.0	1.8	1.5	1	1	1	2	2	2	0	zinc-ribbons
zinc_ribbon_2	PF13240.6	gi|529077143|ref|YP_008376146.1|	-	0.039	13.7	2.0	1.9	8.3	0.3	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF2757	PF10955.8	gi|529077143|ref|YP_008376146.1|	-	0.039	14.2	0.3	2.2	8.6	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2757)
ADK_lid	PF05191.14	gi|529077143|ref|YP_008376146.1|	-	0.041	13.9	2.7	0.13	12.3	2.7	1.7	1	1	0	1	1	1	0	Adenylate	kinase,	active	site	lid
Stc1	PF12898.7	gi|529077143|ref|YP_008376146.1|	-	0.049	14.2	0.1	0.061	13.9	0.1	1.2	1	0	0	1	1	1	0	Stc1	domain
DUF1610	PF07754.11	gi|529077143|ref|YP_008376146.1|	-	0.053	13.5	8.2	1.3	9.0	2.9	2.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
TF_Zn_Ribbon	PF08271.12	gi|529077143|ref|YP_008376146.1|	-	0.063	12.8	6.6	0.12	11.9	0.3	2.2	1	1	1	2	2	2	0	TFIIB	zinc-binding
Ribosomal_L44	PF00935.19	gi|529077143|ref|YP_008376146.1|	-	0.066	13.7	0.5	12	6.5	0.1	2.1	2	0	0	2	2	2	0	Ribosomal	protein	L44
zf-3CxxC_2	PF17180.4	gi|529077143|ref|YP_008376146.1|	-	0.076	13.8	1.7	0.53	11.1	1.7	1.9	1	1	0	1	1	1	0	Zinc-binding	domain
zf-C2H2	PF00096.26	gi|529077143|ref|YP_008376146.1|	-	0.087	13.3	1.7	1.7	9.3	0.1	2.4	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
Zn_ribbon_SprT	PF17283.2	gi|529077143|ref|YP_008376146.1|	-	0.11	12.4	3.1	0.73	9.8	0.4	2.1	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
VirB7	PF17413.2	gi|529077143|ref|YP_008376146.1|	-	0.12	11.8	0.3	0.2	11.0	0.3	1.4	1	0	0	1	1	1	0	Outer	membrane	lipoprotein	virB7
zf-C2H2_4	PF13894.6	gi|529077143|ref|YP_008376146.1|	-	0.13	13.2	1.1	16	6.7	0.1	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-Mss51	PF13824.6	gi|529077143|ref|YP_008376146.1|	-	0.14	12.3	3.9	0.6	10.3	4.5	1.9	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-HIT	PF04438.16	gi|529077143|ref|YP_008376146.1|	-	0.16	11.9	3.5	0.26	11.2	0.4	2.1	2	0	0	2	2	2	0	HIT	zinc	finger
zinc_ribbon_5	PF13719.6	gi|529077143|ref|YP_008376146.1|	-	0.2	11.5	1.1	7.6	6.4	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_9	PF14369.6	gi|529077143|ref|YP_008376146.1|	-	0.2	12.0	5.1	1.2	9.5	5.2	2.0	1	1	1	2	2	2	0	zinc-ribbon
Zn-ribbon_8	PF09723.10	gi|529077143|ref|YP_008376146.1|	-	0.33	11.1	6.1	1.9	8.7	0.6	2.1	1	1	0	2	2	2	0	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|529077143|ref|YP_008376146.1|	-	0.41	10.6	2.7	0.71	9.8	2.7	1.6	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
UPF0547	PF10571.9	gi|529077143|ref|YP_008376146.1|	-	0.93	9.6	7.6	6.6	6.9	1.9	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-ACC	PF17848.1	gi|529077143|ref|YP_008376146.1|	-	1.5	9.0	6.0	6.7	6.9	0.2	2.4	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
eIF-5_eIF-2B	PF01873.17	gi|529077144|ref|YP_008376147.1|	-	5.3e-36	123.0	0.0	6.5e-36	122.8	0.0	1.0	1	0	0	1	1	1	1	Domain	found	in	IF2B/IF5
zinc_ribbon_12	PF11331.8	gi|529077144|ref|YP_008376147.1|	-	0.095	12.5	0.7	0.2	11.5	0.7	1.5	1	1	0	1	1	1	0	Probable	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.13	gi|529077144|ref|YP_008376147.1|	-	0.17	11.6	4.1	2.2	8.0	4.6	2.1	1	1	1	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Rubredoxin_2	PF18073.1	gi|529077144|ref|YP_008376147.1|	-	0.67	9.7	3.1	5.5	6.8	0.6	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
TF_Zn_Ribbon	PF08271.12	gi|529077144|ref|YP_008376147.1|	-	1.8	8.1	4.6	3.6	7.2	0.4	2.3	1	1	1	2	2	2	0	TFIIB	zinc-binding
UPF0058	PF01893.16	gi|529077145|ref|YP_008376148.1|	-	5.2e-20	71.5	0.2	6e-20	71.3	0.2	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0058
DUF555	PF04475.12	gi|529077146|ref|YP_008376149.1|	-	4.3e-37	126.5	0.1	5.5e-37	126.2	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF555)
zinc_ribbon_2	PF13240.6	gi|529077146|ref|YP_008376149.1|	-	0.025	14.3	0.2	0.049	13.4	0.2	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
HhH-GPD	PF00730.25	gi|529077147|ref|YP_008376150.1|	-	6.2e-16	58.8	0.0	8.7e-16	58.3	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
OGG_N	PF07934.12	gi|529077147|ref|YP_008376150.1|	-	6.1e-08	32.8	0.0	3.1e-07	30.5	0.0	2.0	1	1	0	1	1	1	1	8-oxoguanine	DNA	glycosylase,	N-terminal	domain
HHH	PF00633.23	gi|529077147|ref|YP_008376150.1|	-	0.11	12.4	0.3	1.5	8.9	0.0	2.4	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
Acylphosphatase	PF00708.18	gi|529077148|ref|YP_008376151.1|	-	1.6e-27	95.7	0.1	1.8e-27	95.5	0.1	1.0	1	0	0	1	1	1	1	Acylphosphatase
Carb_kinase	PF01256.17	gi|529077150|ref|YP_008376153.1|	-	2.3e-47	161.5	0.7	3.2e-47	161.1	0.7	1.2	1	0	0	1	1	1	1	Carbohydrate	kinase
YjeF_N	PF03853.15	gi|529077150|ref|YP_008376153.1|	-	2.8e-41	141.3	0.7	2.8e-41	141.3	0.7	1.7	2	0	0	2	2	2	1	YjeF-related	protein	N-terminus
HK	PF02110.15	gi|529077150|ref|YP_008376153.1|	-	2.9e-06	26.8	0.0	5.2e-06	26.0	0.0	1.3	1	0	0	1	1	1	1	Hydroxyethylthiazole	kinase	family
GTP-bdg_N	PF13167.6	gi|529077151|ref|YP_008376154.1|	-	1.1e-20	74.1	0.0	2.5e-20	72.9	0.0	1.7	1	0	0	1	1	1	1	GTP-binding	GTPase	N-terminal
GTP-bdg_M	PF16360.5	gi|529077151|ref|YP_008376154.1|	-	1.5e-17	64.0	8.5	3.8e-17	62.6	8.5	1.7	1	0	0	1	1	1	1	GTP-binding	GTPase	Middle	Region
MMR_HSR1	PF01926.23	gi|529077151|ref|YP_008376154.1|	-	1.6e-17	63.6	0.1	7.7e-17	61.4	0.0	2.1	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
GTP_EFTU	PF00009.27	gi|529077151|ref|YP_008376154.1|	-	7.1e-11	42.0	0.7	4.7e-10	39.3	0.1	2.7	3	1	0	3	3	3	1	Elongation	factor	Tu	GTP	binding	domain
RsgA_GTPase	PF03193.16	gi|529077151|ref|YP_008376154.1|	-	4.7e-09	36.4	0.0	0.00027	20.9	0.1	2.5	2	0	0	2	2	2	2	RsgA	GTPase
cobW	PF02492.19	gi|529077151|ref|YP_008376154.1|	-	1.6e-06	27.9	0.1	0.00035	20.2	0.0	2.4	1	1	1	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
MMR_HSR1_Xtn	PF16897.5	gi|529077151|ref|YP_008376154.1|	-	1.9e-06	27.9	0.0	3.9e-06	26.8	0.0	1.5	1	0	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
FeoB_N	PF02421.18	gi|529077151|ref|YP_008376154.1|	-	4.9e-05	22.9	0.2	0.047	13.2	0.1	2.6	3	0	0	3	3	3	2	Ferrous	iron	transport	protein	B
MnmE_helical	PF12631.7	gi|529077151|ref|YP_008376154.1|	-	0.00062	20.0	0.1	0.00097	19.4	0.1	1.3	1	0	0	1	1	1	1	MnmE	helical	domain
Arf	PF00025.21	gi|529077151|ref|YP_008376154.1|	-	0.00069	19.1	0.3	0.8	9.1	0.0	2.7	2	1	0	3	3	3	2	ADP-ribosylation	factor	family
AAA_18	PF13238.6	gi|529077151|ref|YP_008376154.1|	-	0.0021	18.6	0.4	0.01	16.4	0.0	2.4	2	1	1	3	3	3	1	AAA	domain
AAA_14	PF13173.6	gi|529077151|ref|YP_008376154.1|	-	0.017	15.1	0.0	0.035	14.1	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DUF2046	PF09755.9	gi|529077151|ref|YP_008376154.1|	-	0.018	14.3	2.1	0.038	13.2	0.0	2.0	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	H4	(DUF2046)
ABC_tran	PF00005.27	gi|529077151|ref|YP_008376154.1|	-	0.027	15.0	0.0	0.084	13.4	0.0	2.0	1	1	1	2	2	2	0	ABC	transporter
MeaB	PF03308.16	gi|529077151|ref|YP_008376154.1|	-	0.03	13.3	0.3	43	3.0	0.0	3.5	3	1	1	4	4	4	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
PduV-EutP	PF10662.9	gi|529077151|ref|YP_008376154.1|	-	0.038	13.7	0.0	1.1	9.0	0.0	2.2	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
Roc	PF08477.13	gi|529077151|ref|YP_008376154.1|	-	0.049	13.8	0.0	9.9	6.4	0.0	2.5	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA_22	PF13401.6	gi|529077151|ref|YP_008376154.1|	-	0.051	13.9	0.0	0.31	11.3	0.0	2.5	2	1	0	2	2	2	0	AAA	domain
AAA_16	PF13191.6	gi|529077151|ref|YP_008376154.1|	-	0.16	12.4	5.7	0.07	13.5	1.1	2.5	1	1	1	2	2	2	0	AAA	ATPase	domain
AAA_23	PF13476.6	gi|529077151|ref|YP_008376154.1|	-	3.6	8.0	5.0	22	5.5	0.0	2.5	2	1	1	3	3	3	0	AAA	domain
PIN	PF01850.21	gi|529077152|ref|YP_008376155.1|	-	9.8e-08	32.5	0.4	1.3e-07	32.2	0.4	1.0	1	0	0	1	1	1	1	PIN	domain
DUF4872	PF16169.5	gi|529077152|ref|YP_008376155.1|	-	0.088	12.6	0.0	0.13	12.1	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4872)
HTH_20	PF12840.7	gi|529077153|ref|YP_008376156.1|	-	2.5e-06	27.5	0.1	7.1e-06	26.0	0.1	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|529077153|ref|YP_008376156.1|	-	6.7e-06	26.0	0.0	9.6e-06	25.5	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
HTH_23	PF13384.6	gi|529077153|ref|YP_008376156.1|	-	0.0014	18.3	0.0	0.0022	17.7	0.0	1.2	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_Mga	PF08280.11	gi|529077153|ref|YP_008376156.1|	-	0.0092	16.0	0.0	0.012	15.6	0.0	1.2	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_Crp_2	PF13545.6	gi|529077153|ref|YP_008376156.1|	-	0.011	15.7	0.0	0.013	15.4	0.0	1.1	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
MarR_2	PF12802.7	gi|529077153|ref|YP_008376156.1|	-	0.011	15.6	0.1	0.016	15.1	0.1	1.2	1	0	0	1	1	1	0	MarR	family
TrmB	PF01978.19	gi|529077153|ref|YP_008376156.1|	-	0.015	15.2	0.0	0.023	14.6	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_AsnC-type	PF13404.6	gi|529077153|ref|YP_008376156.1|	-	0.033	14.0	0.0	0.064	13.1	0.0	1.5	1	1	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Rrf2	PF02082.20	gi|529077153|ref|YP_008376156.1|	-	0.038	14.3	0.0	0.052	13.9	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
RPA_C	PF08784.11	gi|529077153|ref|YP_008376156.1|	-	0.046	14.4	0.0	0.064	13.9	0.0	1.1	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
HTH_36	PF13730.6	gi|529077153|ref|YP_008376156.1|	-	0.049	13.6	0.0	0.068	13.1	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_42	PF06224.12	gi|529077153|ref|YP_008376156.1|	-	0.061	12.9	0.8	0.31	10.6	0.6	1.7	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
Sigma70_r4	PF04545.16	gi|529077153|ref|YP_008376156.1|	-	0.073	12.6	0.0	0.11	12.0	0.0	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
GerE	PF00196.19	gi|529077153|ref|YP_008376156.1|	-	0.075	12.6	0.0	0.11	12.1	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_IclR	PF09339.10	gi|529077153|ref|YP_008376156.1|	-	0.12	12.2	0.0	0.17	11.7	0.0	1.2	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_28	PF13518.6	gi|529077153|ref|YP_008376156.1|	-	0.13	12.5	0.0	0.17	12.0	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
SgrR_N	PF12793.7	gi|529077153|ref|YP_008376156.1|	-	0.15	12.2	0.0	0.19	11.9	0.0	1.1	1	0	0	1	1	1	0	Sugar	transport-related	sRNA	regulator	N-term
ThuA	PF06283.11	gi|529077154|ref|YP_008376157.1|	-	7.9e-30	104.6	0.0	2.1e-29	103.3	0.0	1.6	1	1	0	1	1	1	1	Trehalose	utilisation
DUF2194	PF09960.9	gi|529077154|ref|YP_008376157.1|	-	0.3	9.4	0.0	0.81	8.0	0.0	1.6	1	1	0	1	1	1	0	Uncharacterised	protein	conserved	in	bacteria	(DUF2194)
Zincin_1	PF06262.11	gi|529077155|ref|YP_008376158.1|	-	0.024	14.7	0.0	2.6	8.2	0.0	2.4	2	0	0	2	2	2	0	Zincin-like	metallopeptidase
VWA	PF00092.28	gi|529077156|ref|YP_008376159.1|	-	1.3e-23	84.1	1.8	2.3e-23	83.4	0.3	2.1	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_2	PF13519.6	gi|529077156|ref|YP_008376159.1|	-	1.7e-17	64.0	2.5	1.9e-17	63.8	0.1	2.4	3	0	0	3	3	3	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.14	gi|529077156|ref|YP_008376159.1|	-	0.0054	16.1	0.2	0.013	14.9	0.2	1.5	1	0	0	1	1	1	1	VWA	domain	containing	CoxE-like	protein
Zincin_1	PF06262.11	gi|529077156|ref|YP_008376159.1|	-	0.033	14.3	0.0	14	5.9	0.0	2.6	2	0	0	2	2	2	0	Zincin-like	metallopeptidase
ThuA	PF06283.11	gi|529077157|ref|YP_008376160.1|	-	9.1e-11	42.4	0.1	7.5e-09	36.1	0.1	2.1	1	1	1	2	2	2	2	Trehalose	utilisation
Rib_5-P_isom_A	PF06026.14	gi|529077158|ref|YP_008376161.1|	-	6.3e-55	185.4	0.2	7.7e-55	185.1	0.2	1.1	1	0	0	1	1	1	1	Ribose	5-phosphate	isomerase	A	(phosphoriboisomerase	A)
DeoRC	PF00455.22	gi|529077158|ref|YP_008376161.1|	-	2.8e-05	24.1	0.0	5.3e-05	23.2	0.0	1.4	1	0	0	1	1	1	1	DeoR	C	terminal	sensor	domain
Ribul_P_3_epim	PF00834.19	gi|529077159|ref|YP_008376162.1|	-	1.7e-65	220.2	0.0	1.9e-65	220.0	0.0	1.0	1	0	0	1	1	1	1	Ribulose-phosphate	3	epimerase	family
His_biosynth	PF00977.21	gi|529077159|ref|YP_008376162.1|	-	0.00014	21.4	0.0	0.0015	18.0	0.0	2.2	1	1	0	2	2	2	1	Histidine	biosynthesis	protein
PEP_mutase	PF13714.6	gi|529077159|ref|YP_008376162.1|	-	0.0074	15.8	0.2	0.87	9.0	0.2	2.3	1	1	1	2	2	2	2	Phosphoenolpyruvate	phosphomutase
LysR_substrate	PF03466.20	gi|529077159|ref|YP_008376162.1|	-	0.018	14.4	0.1	0.028	13.8	0.1	1.3	1	0	0	1	1	1	0	LysR	substrate	binding	domain
TMP-TENI	PF02581.17	gi|529077159|ref|YP_008376162.1|	-	0.031	13.6	0.1	0.04	13.3	0.1	1.1	1	0	0	1	1	1	0	Thiamine	monophosphate	synthase
Trp_syntA	PF00290.20	gi|529077159|ref|YP_008376162.1|	-	0.097	11.5	0.0	0.13	11.1	0.0	1.2	1	0	0	1	1	1	0	Tryptophan	synthase	alpha	chain
Pribosyltran	PF00156.27	gi|529077160|ref|YP_008376163.1|	-	1.4e-10	40.9	0.6	4e-10	39.4	0.1	1.9	2	1	0	2	2	2	1	Phosphoribosyl	transferase	domain
Pribosyltran_N	PF13793.6	gi|529077160|ref|YP_008376163.1|	-	4.3e-09	36.3	0.0	1.7e-07	31.2	0.0	2.2	2	0	0	2	2	2	1	N-terminal	domain	of	ribose	phosphate	pyrophosphokinase
UPRTase	PF14681.6	gi|529077160|ref|YP_008376163.1|	-	1.3e-05	24.8	0.0	2e-05	24.2	0.0	1.3	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Pribosyl_synth	PF14572.6	gi|529077160|ref|YP_008376163.1|	-	2.9e-05	24.2	0.1	4.8e-05	23.5	0.1	1.3	1	0	0	1	1	1	1	Phosphoribosyl	synthetase-associated	domain
PRTase_2	PF15609.6	gi|529077160|ref|YP_008376163.1|	-	0.00027	20.5	0.0	0.0031	17.0	0.2	2.1	1	1	1	2	2	2	1	Phosphoribosyl	transferase
Cas_Cas02710	PF09670.10	gi|529077161|ref|YP_008376164.1|	-	0.022	13.6	0.1	0.031	13.1	0.1	1.1	1	0	0	1	1	1	0	CRISPR-associated	protein	(Cas_Cas02710)
ThiG	PF05690.14	gi|529077162|ref|YP_008376165.1|	-	0.0024	17.2	0.3	0.004	16.5	0.3	1.3	1	0	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
His_biosynth	PF00977.21	gi|529077162|ref|YP_008376165.1|	-	0.0034	16.9	0.0	0.021	14.3	0.0	2.0	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
FMN_dh	PF01070.18	gi|529077162|ref|YP_008376165.1|	-	0.0087	15.1	0.5	0.013	14.5	0.5	1.3	1	0	0	1	1	1	1	FMN-dependent	dehydrogenase
TIM	PF00121.18	gi|529077162|ref|YP_008376165.1|	-	0.057	12.8	0.0	0.084	12.2	0.0	1.3	1	0	0	1	1	1	0	Triosephosphate	isomerase
Aldo_ket_red	PF00248.21	gi|529077163|ref|YP_008376166.1|	-	4.3e-56	190.3	0.0	5.2e-54	183.4	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
PAS	PF00989.25	gi|529077164|ref|YP_008376167.1|	-	7.8e-31	106.4	0.3	2.7e-15	56.4	0.0	3.5	3	0	0	3	3	3	3	PAS	fold
PAS_9	PF13426.7	gi|529077164|ref|YP_008376167.1|	-	2.4e-25	88.8	0.0	1.8e-14	53.8	0.0	3.6	3	0	0	3	3	3	2	PAS	domain
Response_reg	PF00072.24	gi|529077164|ref|YP_008376167.1|	-	5.2e-24	84.6	0.0	1.1e-23	83.5	0.0	1.5	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_4	PF08448.10	gi|529077164|ref|YP_008376167.1|	-	2.9e-23	82.2	13.8	1.5e-11	44.5	0.4	4.0	4	0	0	4	4	4	3	PAS	fold
GAF_2	PF13185.6	gi|529077164|ref|YP_008376167.1|	-	4.8e-23	82.0	1.8	4.8e-23	82.0	1.8	2.9	3	0	0	3	3	3	1	GAF	domain
PAS_8	PF13188.7	gi|529077164|ref|YP_008376167.1|	-	6.3e-18	64.4	1.7	4.4e-06	26.6	0.3	3.9	3	0	0	3	3	3	3	PAS	domain
HATPase_c	PF02518.26	gi|529077164|ref|YP_008376167.1|	-	4e-17	62.7	0.0	8.1e-17	61.7	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.12	gi|529077164|ref|YP_008376167.1|	-	4.6e-13	49.3	0.4	2.4e-07	30.9	0.0	3.1	3	0	0	3	3	3	2	PAS	fold
GAF	PF01590.26	gi|529077164|ref|YP_008376167.1|	-	3.1e-11	44.0	0.0	1.2e-10	42.2	0.0	2.0	1	0	0	1	1	1	1	GAF	domain
GAF_3	PF13492.6	gi|529077164|ref|YP_008376167.1|	-	2.7e-08	34.2	0.0	6.8e-08	32.9	0.0	1.7	1	0	0	1	1	1	1	GAF	domain
HisKA	PF00512.25	gi|529077164|ref|YP_008376167.1|	-	1.2e-06	28.4	4.0	1.2e-06	28.4	0.8	2.7	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_7	PF12860.7	gi|529077164|ref|YP_008376167.1|	-	1.7e-06	28.1	0.8	0.0002	21.5	0.0	3.5	3	0	0	3	3	3	1	PAS	fold
HATPase_c_2	PF13581.6	gi|529077164|ref|YP_008376167.1|	-	0.045	13.7	0.2	0.17	11.9	0.2	2.0	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
TAL_FSA	PF00923.19	gi|529077165|ref|YP_008376168.1|	-	2.1e-53	181.6	0.0	4.6e-53	180.4	0.0	1.5	1	1	0	1	1	1	1	Transaldolase/Fructose-6-phosphate	aldolase
ABC_transp_aux	PF09822.9	gi|529077165|ref|YP_008376168.1|	-	0.016	14.7	0.0	0.12	11.9	0.0	2.0	1	1	1	2	2	2	0	ABC-type	uncharacterized	transport	system
ALAD	PF00490.21	gi|529077165|ref|YP_008376168.1|	-	0.027	13.6	0.4	0.73	8.9	0.0	2.3	1	1	1	2	2	2	0	Delta-aminolevulinic	acid	dehydratase
Transketolase_C	PF02780.20	gi|529077166|ref|YP_008376169.1|	-	4.9e-38	129.8	0.2	1e-37	128.7	0.2	1.6	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
Transket_pyr	PF02779.24	gi|529077166|ref|YP_008376169.1|	-	5.2e-33	114.2	0.0	9.5e-33	113.4	0.0	1.4	1	0	0	1	1	1	1	Transketolase,	pyrimidine	binding	domain
PFOR_II	PF17147.4	gi|529077166|ref|YP_008376169.1|	-	0.00022	21.5	0.0	0.00058	20.1	0.0	1.7	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_N	PF00456.21	gi|529077167|ref|YP_008376170.1|	-	8.3e-44	149.9	0.0	1.3e-43	149.3	0.0	1.2	1	0	0	1	1	1	1	Transketolase,	thiamine	diphosphate	binding	domain
DXP_synthase_N	PF13292.6	gi|529077167|ref|YP_008376170.1|	-	4.1e-13	49.2	0.0	1.6e-09	37.4	0.0	2.3	1	1	1	2	2	2	2	1-deoxy-D-xylulose-5-phosphate	synthase
XFP_N	PF09364.10	gi|529077167|ref|YP_008376170.1|	-	1.2e-08	34.2	0.1	2.7e-08	33.0	0.1	1.5	1	0	0	1	1	1	1	XFP	N-terminal	domain
TPP_enzyme_C	PF02775.21	gi|529077167|ref|YP_008376170.1|	-	3e-06	27.1	0.0	0.0001	22.1	0.0	2.3	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
E1_dh	PF00676.20	gi|529077167|ref|YP_008376170.1|	-	2.1e-05	23.6	0.0	3.1e-05	23.1	0.0	1.1	1	0	0	1	1	1	1	Dehydrogenase	E1	component
SHOCT	PF09851.9	gi|529077167|ref|YP_008376170.1|	-	0.026	14.2	0.1	0.062	13.1	0.1	1.7	1	0	0	1	1	1	0	Short	C-terminal	domain
PepSY_2	PF13670.6	gi|529077167|ref|YP_008376170.1|	-	0.043	13.8	0.3	6.1	6.9	0.0	3.0	3	0	0	3	3	3	0	Peptidase	propeptide	and	YPEB	domain
SBP_bac_8	PF13416.6	gi|529077168|ref|YP_008376171.1|	-	1.4e-19	71.0	0.0	1.8e-19	70.7	0.0	1.0	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|529077168|ref|YP_008376171.1|	-	8.5e-11	42.4	0.3	1.1e-10	42.0	0.3	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|529077168|ref|YP_008376171.1|	-	0.0038	17.0	0.1	0.35	10.6	0.1	2.3	2	0	0	2	2	2	2	Bacterial	extracellular	solute-binding	protein
Glyco_hydro_4	PF02056.16	gi|529077169|ref|YP_008376172.1|	-	1.8e-45	154.8	0.0	2.6e-45	154.2	0.0	1.2	1	0	0	1	1	1	1	Family	4	glycosyl	hydrolase
Glyco_hydro_4C	PF11975.8	gi|529077169|ref|YP_008376172.1|	-	3.4e-39	135.1	0.0	5e-39	134.5	0.0	1.3	1	0	0	1	1	1	1	Family	4	glycosyl	hydrolase	C-terminal	domain
Ldh_1_N	PF00056.23	gi|529077169|ref|YP_008376172.1|	-	0.021	14.9	0.1	0.9	9.6	0.0	2.9	3	0	0	3	3	3	0	lactate/malate	dehydrogenase,	NAD	binding	domain
Rrf2	PF02082.20	gi|529077170|ref|YP_008376173.1|	-	5.1e-07	30.0	0.0	1.1e-06	28.9	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_20	PF12840.7	gi|529077170|ref|YP_008376173.1|	-	0.00059	19.8	0.3	0.0018	18.3	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
LexA_DNA_bind	PF01726.16	gi|529077170|ref|YP_008376173.1|	-	0.001	18.8	0.0	0.002	17.9	0.0	1.4	1	0	0	1	1	1	1	LexA	DNA	binding	domain
MarR_2	PF12802.7	gi|529077170|ref|YP_008376173.1|	-	0.057	13.3	0.1	0.22	11.5	0.0	1.9	1	1	1	2	2	2	0	MarR	family
SgrR_N	PF12793.7	gi|529077170|ref|YP_008376173.1|	-	0.11	12.7	0.0	0.18	12.0	0.0	1.5	1	0	0	1	1	1	0	Sugar	transport-related	sRNA	regulator	N-term
TrmB	PF01978.19	gi|529077170|ref|YP_008376173.1|	-	0.13	12.2	0.0	0.27	11.2	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Ets	PF00178.22	gi|529077171|ref|YP_008376174.1|	-	0.056	13.9	0.0	0.11	13.0	0.0	1.4	1	0	0	1	1	1	0	Ets-domain
Glyco_hydro_3	PF00933.21	gi|529077172|ref|YP_008376175.1|	-	1.7e-80	270.8	0.0	2.3e-80	270.4	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.22	gi|529077172|ref|YP_008376175.1|	-	4e-54	183.7	0.0	7.8e-54	182.7	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.6	gi|529077172|ref|YP_008376175.1|	-	5e-20	71.4	0.0	1.3e-19	70.1	0.0	1.8	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
DUF1707	PF08044.11	gi|529077172|ref|YP_008376175.1|	-	0.6	10.2	4.6	0.48	10.5	0.2	3.1	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1707)
adh_short_C2	PF13561.6	gi|529077173|ref|YP_008376176.1|	-	4e-64	216.4	0.9	4.7e-64	216.2	0.9	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|529077173|ref|YP_008376176.1|	-	1.1e-54	184.9	2.7	1.3e-54	184.7	2.7	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|529077173|ref|YP_008376176.1|	-	7.7e-11	42.2	0.5	1.1e-10	41.7	0.5	1.2	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|529077173|ref|YP_008376176.1|	-	0.0057	16.1	0.6	0.012	15.1	0.6	1.7	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|529077173|ref|YP_008376176.1|	-	0.023	13.7	0.2	0.046	12.7	0.1	1.6	2	0	0	2	2	2	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
THF_DHG_CYH_C	PF02882.19	gi|529077173|ref|YP_008376176.1|	-	0.033	13.5	4.0	0.03	13.7	1.4	2.2	2	1	1	3	3	3	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
DFP	PF04127.15	gi|529077173|ref|YP_008376176.1|	-	0.18	11.6	4.2	0.48	10.2	4.2	1.7	1	1	0	1	1	1	0	DNA	/	pantothenate	metabolism	flavoprotein
UxuA	PF03786.13	gi|529077174|ref|YP_008376177.1|	-	4.7e-79	265.8	0.1	2.5e-60	204.2	0.0	2.0	1	1	1	2	2	2	2	D-mannonate	dehydratase	(UxuA)
AP_endonuc_2	PF01261.24	gi|529077174|ref|YP_008376177.1|	-	3.1e-19	69.3	0.0	3.9e-19	68.9	0.0	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
SMBP	PF16785.5	gi|529077175|ref|YP_008376178.1|	-	0.11	12.7	0.2	0.11	12.7	0.2	1.5	1	1	1	2	2	2	0	Small	metal-binding	protein
Mst1_SARAH	PF11629.8	gi|529077176|ref|YP_008376179.1|	-	0.05	13.7	1.1	9.8	6.4	0.1	2.3	2	0	0	2	2	2	0	C	terminal	SARAH	domain	of	Mst1
UxaC	PF02614.14	gi|529077177|ref|YP_008376180.1|	-	1.3e-138	462.8	0.0	1.5e-138	462.6	0.0	1.0	1	0	0	1	1	1	1	Glucuronate	isomerase
UPF0236	PF06782.11	gi|529077178|ref|YP_008376181.1|	-	2.3e-06	26.5	0.0	0.00018	20.3	0.0	2.2	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|529077178|ref|YP_008376181.1|	-	0.0028	16.6	0.3	2.8	6.7	0.1	2.8	2	2	0	2	2	2	2	Transposase,	Mutator	family
DDE_Tnp_IS66	PF03050.14	gi|529077178|ref|YP_008376181.1|	-	0.0032	17.0	0.1	0.0046	16.5	0.1	1.2	1	0	0	1	1	1	1	Transposase	IS66	family
Glyco_hydro_67M	PF07488.12	gi|529077180|ref|YP_008376183.1|	-	6.7e-133	442.8	0.0	8.8e-133	442.4	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	67	middle	domain
Glyco_hydro_67C	PF07477.12	gi|529077180|ref|YP_008376183.1|	-	7.5e-84	280.7	0.8	1.1e-83	280.2	0.8	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	67	C-terminus
Glyco_hydro_67N	PF03648.14	gi|529077180|ref|YP_008376183.1|	-	4.2e-24	85.2	0.0	6.4e-24	84.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	67	N-terminus
DUF4838	PF16126.5	gi|529077180|ref|YP_008376183.1|	-	0.0016	17.8	0.0	0.0035	16.8	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4838)
Mut7-C	PF01927.16	gi|529077181|ref|YP_008376184.1|	-	8.9e-45	152.4	0.0	9.9e-45	152.2	0.0	1.0	1	0	0	1	1	1	1	Mut7-C	RNAse	domain
DUF5615	PF18480.1	gi|529077181|ref|YP_008376184.1|	-	0.0001	21.9	0.1	0.00019	21.1	0.1	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5615)
DNA_RNApol_7kD	PF03604.13	gi|529077181|ref|YP_008376184.1|	-	0.039	13.6	0.5	5	6.9	0.1	2.5	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Zn_ribbon_SprT	PF17283.2	gi|529077181|ref|YP_008376184.1|	-	0.045	13.7	0.3	3	7.8	0.0	2.3	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
zf-trcl	PF13451.6	gi|529077181|ref|YP_008376184.1|	-	0.11	12.4	0.9	11	6.0	0.1	2.2	2	0	0	2	2	2	0	Probable	zinc-ribbon	domain
Penicillinase_R	PF03965.16	gi|529077182|ref|YP_008376185.1|	-	0.059	13.7	0.0	0.1	13.0	0.0	1.4	1	0	0	1	1	1	0	Penicillinase	repressor
Crystallin	PF00525.18	gi|529077183|ref|YP_008376186.1|	-	0.11	12.7	0.0	2.4	8.4	0.0	2.3	2	0	0	2	2	2	0	Alpha	crystallin	A	chain,	N	terminal
F-box	PF00646.33	gi|529077183|ref|YP_008376186.1|	-	0.17	11.8	0.1	0.29	11.1	0.1	1.4	1	0	0	1	1	1	0	F-box	domain
Imm27	PF15590.6	gi|529077185|ref|YP_008376188.1|	-	0.028	14.2	0.0	0.043	13.6	0.0	1.3	1	0	0	1	1	1	0	Immunity	protein	27
LHC	PF00556.20	gi|529077185|ref|YP_008376188.1|	-	0.049	13.8	0.2	0.061	13.5	0.2	1.2	1	0	0	1	1	1	0	Antenna	complex	alpha/beta	subunit
Polysacc_synt_C	PF14667.6	gi|529077186|ref|YP_008376189.1|	-	0.011	15.7	0.4	0.012	15.6	0.4	1.0	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	C-terminal	domain
Phage_holin_5_2	PF16079.5	gi|529077186|ref|YP_008376189.1|	-	0.16	12.4	0.9	0.91	9.9	0.4	1.9	1	1	1	2	2	2	0	Phage	holin	family	Hol44,	in	holin	superfamily	V
DUF4131	PF13567.6	gi|529077187|ref|YP_008376190.1|	-	0.061	13.0	0.0	0.076	12.7	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
DUF2975	PF11188.8	gi|529077187|ref|YP_008376190.1|	-	0.14	12.1	2.5	0.19	11.6	2.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2975)
DUF2721	PF11026.8	gi|529077187|ref|YP_008376190.1|	-	1.7	8.6	8.9	0.43	10.5	2.2	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2721)
NUDIX	PF00293.28	gi|529077188|ref|YP_008376191.1|	-	2.3e-17	63.3	1.5	3.5e-17	62.7	1.6	1.3	1	1	0	1	1	1	1	NUDIX	domain
AAA_17	PF13207.6	gi|529077188|ref|YP_008376191.1|	-	0.023	15.1	0.1	0.037	14.4	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
NUDIX_4	PF14815.6	gi|529077188|ref|YP_008376191.1|	-	0.071	13.1	0.1	0.091	12.8	0.1	1.2	1	0	0	1	1	1	0	NUDIX	domain
Ribosomal_S10	PF00338.22	gi|529077189|ref|YP_008376192.1|	-	6.3e-12	45.6	0.0	7.2e-12	45.4	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
Peptidase_M20	PF01546.28	gi|529077190|ref|YP_008376193.1|	-	1.5e-22	80.3	5.1	2.1e-22	79.9	5.1	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|529077190|ref|YP_008376193.1|	-	2.7e-12	46.6	0.5	5.3e-12	45.6	0.5	1.5	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
FAD_binding_3	PF01494.19	gi|529077191|ref|YP_008376194.1|	-	2.1e-12	47.0	0.5	3.3e-05	23.3	0.0	2.3	2	0	0	2	2	2	2	FAD	binding	domain
FAD_binding_2	PF00890.24	gi|529077191|ref|YP_008376194.1|	-	4.4e-12	45.8	7.9	1.1e-07	31.3	1.3	2.5	3	0	0	3	3	3	2	FAD	binding	domain
Trp_halogenase	PF04820.14	gi|529077191|ref|YP_008376194.1|	-	1.3e-10	40.7	1.5	2.3e-07	30.0	0.0	2.3	2	0	0	2	2	2	2	Tryptophan	halogenase
DAO	PF01266.24	gi|529077191|ref|YP_008376194.1|	-	6.9e-10	39.0	9.8	4.2e-05	23.3	1.1	3.0	2	1	1	3	3	3	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|529077191|ref|YP_008376194.1|	-	2.2e-09	37.2	4.9	2.2e-09	37.2	4.9	2.4	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|529077191|ref|YP_008376194.1|	-	2.8e-07	30.0	0.3	4.1e-07	29.4	0.3	1.4	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Pyr_redox_2	PF07992.14	gi|529077191|ref|YP_008376194.1|	-	4.3e-07	29.5	4.6	1.3e-05	24.6	0.4	2.9	2	1	1	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|529077191|ref|YP_008376194.1|	-	2e-06	27.3	2.3	5.5e-06	25.8	0.9	2.0	2	0	0	2	2	2	1	Thi4	family
Lycopene_cycl	PF05834.12	gi|529077191|ref|YP_008376194.1|	-	2.4e-06	26.9	2.4	0.0092	15.1	0.8	2.9	3	0	0	3	3	3	2	Lycopene	cyclase	protein
NAD_binding_8	PF13450.6	gi|529077191|ref|YP_008376194.1|	-	4.3e-06	26.9	5.6	6.9e-06	26.2	0.3	2.6	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|529077191|ref|YP_008376194.1|	-	4.6e-06	25.6	0.6	0.00016	20.5	0.6	2.2	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox	PF00070.27	gi|529077191|ref|YP_008376194.1|	-	6.6e-06	26.6	9.0	0.00043	20.8	1.0	2.7	3	0	0	3	3	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.16	gi|529077191|ref|YP_008376194.1|	-	0.0052	16.4	0.0	0.01	15.5	0.0	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
AlaDh_PNT_C	PF01262.21	gi|529077191|ref|YP_008376194.1|	-	0.0075	15.6	0.3	0.0075	15.6	0.3	1.6	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
3HCDH_N	PF02737.18	gi|529077191|ref|YP_008376194.1|	-	0.0096	15.8	0.1	0.016	15.1	0.1	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pyr_redox_3	PF13738.6	gi|529077191|ref|YP_008376194.1|	-	0.014	14.6	1.0	0.032	13.5	0.5	1.8	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|529077191|ref|YP_008376194.1|	-	0.033	14.2	0.9	0.17	11.8	0.1	2.5	4	0	0	4	4	4	0	FAD-NAD(P)-binding
Shikimate_DH	PF01488.20	gi|529077191|ref|YP_008376194.1|	-	0.11	12.6	0.0	0.43	10.6	0.0	2.0	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
GDI	PF00996.18	gi|529077191|ref|YP_008376194.1|	-	0.2	10.1	0.0	0.38	9.2	0.0	1.3	1	0	0	1	1	1	0	GDP	dissociation	inhibitor
Fer2	PF00111.27	gi|529077192|ref|YP_008376195.1|	-	1.3e-12	47.4	1.6	2e-12	46.9	1.6	1.3	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.6	gi|529077192|ref|YP_008376195.1|	-	0.0031	17.5	0.1	0.0035	17.3	0.1	1.1	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
DHODB_Fe-S_bind	PF10418.9	gi|529077192|ref|YP_008376195.1|	-	0.053	13.3	0.7	0.15	11.9	0.4	1.8	2	0	0	2	2	2	0	Iron-sulfur	cluster	binding	domain	of	dihydroorotate	dehydrogenase	B
Pyr_redox_2	PF07992.14	gi|529077193|ref|YP_008376196.1|	-	1.3e-35	123.1	0.5	1.8e-35	122.6	0.5	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|529077193|ref|YP_008376196.1|	-	8.5e-10	39.1	2.1	8.8e-09	35.8	0.0	2.8	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|529077193|ref|YP_008376196.1|	-	1.3e-08	35.1	0.0	2.4e-08	34.2	0.0	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Sacchrp_dh_NADP	PF03435.18	gi|529077193|ref|YP_008376196.1|	-	0.011	16.0	0.0	3	8.1	0.1	2.6	2	0	0	2	2	2	0	Saccharopine	dehydrogenase	NADP	binding	domain
GIDA	PF01134.22	gi|529077193|ref|YP_008376196.1|	-	0.012	14.7	0.0	0.87	8.6	0.1	2.3	2	1	0	2	2	2	0	Glucose	inhibited	division	protein	A
NAD_binding_9	PF13454.6	gi|529077193|ref|YP_008376196.1|	-	0.019	15.0	1.1	2.1	8.3	0.7	3.1	2	1	0	2	2	2	0	FAD-NAD(P)-binding
Semialdhyde_dh	PF01118.24	gi|529077193|ref|YP_008376196.1|	-	0.044	14.2	0.2	3.2	8.2	0.0	3.2	3	1	0	3	3	3	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
DAO	PF01266.24	gi|529077193|ref|YP_008376196.1|	-	0.29	10.7	6.1	1.5	8.3	0.2	2.7	2	1	0	2	2	2	0	FAD	dependent	oxidoreductase
PAPS_reduct	PF01507.19	gi|529077195|ref|YP_008376198.1|	-	1.5e-19	70.7	0.0	1.6e-15	57.6	0.0	3.1	2	1	0	2	2	2	2	Phosphoadenosine	phosphosulfate	reductase	family
Diphthami_syn_2	PF01902.17	gi|529077195|ref|YP_008376198.1|	-	0.038	13.5	0.0	0.1	12.1	0.0	1.6	2	0	0	2	2	2	0	Diphthamide	synthase
ATP_bind_3	PF01171.20	gi|529077195|ref|YP_008376198.1|	-	0.17	11.6	0.0	0.46	10.2	0.0	1.7	1	1	0	1	1	1	0	PP-loop	family
HTH_34	PF13601.6	gi|529077196|ref|YP_008376199.1|	-	2.5e-24	85.3	0.0	2.8e-24	85.1	0.0	1.0	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|529077196|ref|YP_008376199.1|	-	2.5e-12	46.6	0.0	5.2e-12	45.7	0.0	1.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|529077196|ref|YP_008376199.1|	-	1.3e-06	28.1	0.0	2e-06	27.6	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|529077196|ref|YP_008376199.1|	-	3.3e-05	23.7	0.0	4.2e-05	23.3	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|529077196|ref|YP_008376199.1|	-	0.00025	20.5	0.0	0.00041	19.8	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
PadR	PF03551.14	gi|529077196|ref|YP_008376199.1|	-	0.00032	20.6	0.0	0.00042	20.2	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.6	gi|529077196|ref|YP_008376199.1|	-	0.00053	19.9	0.0	0.00074	19.4	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
HxlR	PF01638.17	gi|529077196|ref|YP_008376199.1|	-	0.0044	16.9	0.0	0.0054	16.6	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_27	PF13463.6	gi|529077196|ref|YP_008376199.1|	-	0.0051	17.3	0.0	0.0071	16.8	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HBM	PF16591.5	gi|529077196|ref|YP_008376199.1|	-	0.0072	15.8	0.0	0.013	14.9	0.0	1.4	1	1	0	1	1	1	1	Helical	bimodular	sensor	domain
HTH_40	PF14493.6	gi|529077196|ref|YP_008376199.1|	-	0.021	15.3	0.0	0.027	14.9	0.0	1.4	1	1	0	1	1	1	0	Helix-turn-helix	domain
TrmB	PF01978.19	gi|529077196|ref|YP_008376199.1|	-	0.055	13.4	0.0	0.071	13.0	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
PSD2	PF07624.11	gi|529077197|ref|YP_008376200.1|	-	0.11	12.3	0.0	0.12	12.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1585)
ABC2_membrane_2	PF12679.7	gi|529077198|ref|YP_008376201.1|	-	6e-31	107.8	15.4	1.5e-29	103.2	15.4	2.1	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|529077198|ref|YP_008376201.1|	-	1e-09	38.6	3.8	1e-09	38.6	3.8	1.6	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|529077198|ref|YP_008376201.1|	-	4.8e-06	25.9	16.2	6e-06	25.6	16.2	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|529077198|ref|YP_008376201.1|	-	4.1e-05	23.2	5.7	4.1e-05	23.2	5.7	1.5	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|529077199|ref|YP_008376202.1|	-	1.5e-29	103.2	0.0	2.6e-29	102.5	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529077199|ref|YP_008376202.1|	-	2.4e-13	50.6	0.2	1.3e-08	35.0	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|529077199|ref|YP_008376202.1|	-	0.0027	18.4	0.0	0.0051	17.5	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_23	PF13476.6	gi|529077199|ref|YP_008376202.1|	-	0.025	15.1	0.1	0.042	14.3	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|529077199|ref|YP_008376202.1|	-	0.032	14.1	0.1	0.05	13.5	0.1	1.3	1	0	0	1	1	1	0	RsgA	GTPase
SMC_N	PF02463.19	gi|529077199|ref|YP_008376202.1|	-	0.033	13.6	0.4	11	5.3	0.1	2.8	3	0	0	3	3	3	0	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|529077199|ref|YP_008376202.1|	-	0.035	13.9	0.2	0.067	12.9	0.2	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|529077199|ref|YP_008376202.1|	-	0.096	12.4	0.0	0.32	10.7	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
Arabinose_bd	PF12625.7	gi|529077199|ref|YP_008376202.1|	-	0.11	12.6	1.5	0.2	11.7	0.2	2.0	2	0	0	2	2	2	0	Arabinose-binding	domain	of	AraC	transcription	regulator,	N-term
AAA_15	PF13175.6	gi|529077199|ref|YP_008376202.1|	-	0.2	11.3	0.0	0.28	10.9	0.0	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
Spt5-NGN	PF03439.13	gi|529077200|ref|YP_008376203.1|	-	4.8e-25	87.3	0.1	7.6e-25	86.6	0.1	1.3	1	0	0	1	1	1	1	Early	transcription	elongation	factor	of	RNA	pol	II,	NGN	section
KOW	PF00467.29	gi|529077200|ref|YP_008376203.1|	-	5.9e-08	32.4	0.8	1.3e-07	31.3	0.3	1.9	2	0	0	2	2	2	1	KOW	motif
DbpA	PF03880.15	gi|529077200|ref|YP_008376203.1|	-	0.048	13.7	0.2	0.31	11.1	0.1	2.1	2	0	0	2	2	2	0	DbpA	RNA	binding	domain
Glyco_hydro_65C	PF03633.15	gi|529077200|ref|YP_008376203.1|	-	0.11	12.4	0.2	0.19	11.7	0.2	1.4	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	65,	C-terminal	domain
SecE	PF00584.20	gi|529077201|ref|YP_008376204.1|	-	5.9e-05	22.9	0.4	5.9e-05	22.9	0.4	1.1	1	0	0	1	1	1	1	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
Tubulin	PF00091.25	gi|529077202|ref|YP_008376205.1|	-	1.3e-40	139.7	0.5	2e-40	139.1	0.5	1.3	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
FtsZ_C	PF12327.8	gi|529077202|ref|YP_008376205.1|	-	6.6e-33	112.9	1.9	1.9e-32	111.4	0.5	2.4	2	0	0	2	2	2	1	FtsZ	family,	C-terminal	domain
Tubulin_2	PF13809.6	gi|529077202|ref|YP_008376205.1|	-	0.024	13.9	6.4	0.13	11.4	6.4	2.1	1	1	0	1	1	1	0	Tubulin	like
NAD_binding_10	PF13460.6	gi|529077202|ref|YP_008376205.1|	-	0.032	14.1	2.3	0.098	12.5	0.2	2.4	2	0	0	2	2	2	0	NAD(P)H-binding
Shikimate_DH	PF01488.20	gi|529077202|ref|YP_008376205.1|	-	0.13	12.3	0.8	1.6	8.8	0.6	2.3	1	1	1	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
Semialdhyde_dh	PF01118.24	gi|529077202|ref|YP_008376205.1|	-	0.18	12.2	2.0	2.1	8.8	2.0	2.3	1	1	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
NmrA	PF05368.13	gi|529077202|ref|YP_008376205.1|	-	0.25	10.9	3.3	0.39	10.2	3.3	1.3	1	0	0	1	1	1	0	NmrA-like	family
FAD_binding_6	PF00970.24	gi|529077203|ref|YP_008376206.1|	-	3.5e-09	36.9	0.0	4.7e-09	36.5	0.0	1.2	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
POR_N	PF01855.19	gi|529077204|ref|YP_008376207.1|	-	3.5e-58	197.1	0.5	5.9e-58	196.3	0.5	1.3	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
POR	PF01558.18	gi|529077204|ref|YP_008376207.1|	-	2.4e-38	132.0	0.8	6.1e-38	130.6	0.8	1.7	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
TPP_enzyme_N	PF02776.18	gi|529077204|ref|YP_008376207.1|	-	3e-06	26.9	1.3	5.2e-06	26.2	0.4	1.8	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
PFOR_II	PF17147.4	gi|529077204|ref|YP_008376207.1|	-	0.0057	16.9	0.0	0.013	15.8	0.0	1.7	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
TPP_enzyme_C	PF02775.21	gi|529077205|ref|YP_008376208.1|	-	8.1e-33	113.4	0.4	1.2e-32	112.8	0.4	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PFO_beta_C	PF12367.8	gi|529077205|ref|YP_008376208.1|	-	6.5e-17	61.4	0.1	1.6e-16	60.2	0.1	1.7	1	0	0	1	1	1	1	Pyruvate	ferredoxin	oxidoreductase	beta	subunit	C	terminal
DUF3149	PF11346.8	gi|529077206|ref|YP_008376209.1|	-	8.6	6.1	10.5	1.9	8.2	0.9	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3149)
NifU	PF01106.17	gi|529077208|ref|YP_008376211.1|	-	1.4e-13	50.7	0.1	1.9e-13	50.3	0.1	1.2	1	0	0	1	1	1	1	NifU-like	domain
ApbA_C	PF08546.11	gi|529077209|ref|YP_008376212.1|	-	1.3e-31	109.4	0.0	2.6e-31	108.4	0.0	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA	C	terminal
ApbA	PF02558.16	gi|529077209|ref|YP_008376212.1|	-	2.3e-28	98.7	0.0	3.6e-28	98.1	0.0	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
RsdA_SigD_bd	PF16751.5	gi|529077209|ref|YP_008376212.1|	-	0.1	12.9	1.6	0.5	10.7	0.1	2.8	2	0	0	2	2	2	0	Anti-sigma-D	factor	RsdA	to	sigma	factor	binding	region
DUF111	PF01969.17	gi|529077210|ref|YP_008376213.1|	-	3.2e-125	418.1	6.7	3.6e-125	417.9	6.7	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF111
SelP_N	PF04592.14	gi|529077210|ref|YP_008376213.1|	-	0.32	10.4	5.3	0.51	9.7	5.3	1.2	1	0	0	1	1	1	0	Selenoprotein	P,	N	terminal	region
DUF460	PF04312.13	gi|529077211|ref|YP_008376214.1|	-	0.029	14.1	1.1	0.063	13.0	0.5	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF460)
DUF3093	PF11292.8	gi|529077211|ref|YP_008376214.1|	-	0.051	13.8	0.1	0.1	12.9	0.1	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3093)
FG-GAP_2	PF14312.6	gi|529077212|ref|YP_008376215.1|	-	1e-109	358.6	58.5	1.3e-17	63.7	2.7	7.2	7	0	0	7	7	7	7	FG-GAP	repeat
Kelch_3	PF13415.6	gi|529077212|ref|YP_008376215.1|	-	9.8e-12	44.9	24.3	0.0071	16.6	0.2	7.1	7	0	0	7	7	7	6	Galactose	oxidase,	central	domain
ydhR	PF08803.11	gi|529077212|ref|YP_008376215.1|	-	7.1e-05	22.6	2.3	12	5.9	0.0	6.3	6	1	0	7	7	7	1	Putative	mono-oxygenase	ydhR
Dockerin_1	PF00404.18	gi|529077212|ref|YP_008376215.1|	-	0.00016	21.8	1.8	0.00031	20.9	0.4	2.3	1	1	1	2	2	2	2	Dockerin	type	I	domain
SnoaL_3	PF13474.6	gi|529077212|ref|YP_008376215.1|	-	0.0052	17.0	1.2	12	6.2	0.0	4.5	3	2	2	5	5	5	1	SnoaL-like	domain
Kelch_4	PF13418.6	gi|529077212|ref|YP_008376215.1|	-	0.0079	16.2	6.0	0.85	9.7	0.1	4.6	5	0	0	5	5	5	1	Galactose	oxidase,	central	domain
AnfO_nitrog	PF09582.10	gi|529077212|ref|YP_008376215.1|	-	0.052	12.9	0.0	80	2.5	0.0	4.6	6	0	0	6	6	6	0	Iron	only	nitrogenase	protein	AnfO	(AnfO_nitrog)
DUF4440	PF14534.6	gi|529077212|ref|YP_008376215.1|	-	0.14	12.5	9.6	36	4.8	0.0	5.3	4	2	2	6	6	6	0	Domain	of	unknown	function	(DUF4440)
Kelch_1	PF01344.25	gi|529077212|ref|YP_008376215.1|	-	1.9	8.2	7.7	3.2	7.4	0.1	4.6	7	0	0	7	7	7	0	Kelch	motif
Rad51	PF08423.11	gi|529077213|ref|YP_008376216.1|	-	9.5e-28	97.1	0.0	1.2e-27	96.8	0.0	1.0	1	0	0	1	1	1	1	Rad51
AAA_25	PF13481.6	gi|529077213|ref|YP_008376216.1|	-	1.1e-11	44.7	0.9	1.9e-11	43.9	0.9	1.3	1	0	0	1	1	1	1	AAA	domain
RecA	PF00154.21	gi|529077213|ref|YP_008376216.1|	-	3.5e-11	43.1	0.1	4.9e-11	42.6	0.1	1.2	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
ATPase	PF06745.13	gi|529077213|ref|YP_008376216.1|	-	2.6e-09	36.8	0.0	8.3e-09	35.1	0.0	1.7	1	1	0	1	1	1	1	KaiC
AAA_24	PF13479.6	gi|529077213|ref|YP_008376216.1|	-	1.1e-08	35.1	0.0	1e-07	31.9	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
Zot	PF05707.12	gi|529077213|ref|YP_008376216.1|	-	3.6e-06	26.8	0.0	4.9e-06	26.3	0.0	1.2	1	0	0	1	1	1	1	Zonular	occludens	toxin	(Zot)
DnaB_C	PF03796.15	gi|529077213|ref|YP_008376216.1|	-	0.0004	19.8	0.3	0.0033	16.8	0.2	1.8	1	1	1	2	2	2	1	DnaB-like	helicase	C	terminal	domain
Zeta_toxin	PF06414.12	gi|529077213|ref|YP_008376216.1|	-	0.057	12.7	0.3	0.15	11.3	0.2	1.7	1	1	0	1	1	1	0	Zeta	toxin
Isochorismatase	PF00857.20	gi|529077213|ref|YP_008376216.1|	-	0.075	13.2	0.0	0.12	12.6	0.0	1.3	1	0	0	1	1	1	0	Isochorismatase	family
PhoU	PF01895.19	gi|529077214|ref|YP_008376217.1|	-	7.3e-39	132.1	12.1	3.5e-22	78.6	0.9	2.2	2	0	0	2	2	2	2	PhoU	domain
ATP-synt_D	PF01813.17	gi|529077214|ref|YP_008376217.1|	-	0.001	18.9	0.1	0.0018	18.1	0.1	1.5	1	1	0	1	1	1	1	ATP	synthase	subunit	D
ABC_tran	PF00005.27	gi|529077215|ref|YP_008376218.1|	-	1.8e-30	106.2	0.0	3.2e-30	105.4	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529077215|ref|YP_008376218.1|	-	1.6e-12	47.9	0.1	3.5e-06	27.1	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|529077215|ref|YP_008376218.1|	-	3.4e-09	36.5	0.8	4.8e-08	32.7	0.8	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|529077215|ref|YP_008376218.1|	-	3.4e-06	27.0	0.1	9.5e-05	22.3	0.0	2.2	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|529077215|ref|YP_008376218.1|	-	8.6e-05	22.8	0.0	0.00026	21.3	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|529077215|ref|YP_008376218.1|	-	0.00015	21.7	0.0	0.00036	20.5	0.0	1.6	2	0	0	2	2	2	1	RsgA	GTPase
Rad17	PF03215.15	gi|529077215|ref|YP_008376218.1|	-	0.00097	19.1	0.0	0.0018	18.2	0.0	1.4	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_29	PF13555.6	gi|529077215|ref|YP_008376218.1|	-	0.0011	18.7	0.0	0.0025	17.5	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.6	gi|529077215|ref|YP_008376218.1|	-	0.0021	17.7	0.4	0.059	12.9	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|529077215|ref|YP_008376218.1|	-	0.0023	18.4	0.9	0.012	16.0	0.9	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|529077215|ref|YP_008376218.1|	-	0.0029	18.2	2.2	0.0065	17.0	0.0	2.3	2	2	0	2	2	2	1	AAA	domain
DeoRC	PF00455.22	gi|529077215|ref|YP_008376218.1|	-	0.0045	16.9	0.0	0.011	15.6	0.0	1.6	2	0	0	2	2	2	1	DeoR	C	terminal	sensor	domain
AAA_30	PF13604.6	gi|529077215|ref|YP_008376218.1|	-	0.0061	16.3	0.1	0.23	11.1	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
PRK	PF00485.18	gi|529077215|ref|YP_008376218.1|	-	0.011	15.5	0.1	0.06	13.1	0.0	2.2	2	1	1	3	3	3	0	Phosphoribulokinase	/	Uridine	kinase	family
KdpD	PF02702.17	gi|529077215|ref|YP_008376218.1|	-	0.022	14.2	0.3	0.042	13.3	0.3	1.4	1	0	0	1	1	1	0	Osmosensitive	K+	channel	His	kinase	sensor	domain
AAA_33	PF13671.6	gi|529077215|ref|YP_008376218.1|	-	0.027	14.6	0.0	0.042	14.0	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|529077215|ref|YP_008376218.1|	-	0.034	14.1	0.0	0.069	13.1	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
ATPase_2	PF01637.18	gi|529077215|ref|YP_008376218.1|	-	0.05	13.5	0.6	0.39	10.6	0.5	2.2	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
G-alpha	PF00503.20	gi|529077215|ref|YP_008376218.1|	-	0.078	12.1	0.0	0.19	10.8	0.0	1.6	1	1	0	1	1	1	0	G-protein	alpha	subunit
AAA_18	PF13238.6	gi|529077215|ref|YP_008376218.1|	-	0.082	13.5	0.0	0.2	12.2	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|529077215|ref|YP_008376218.1|	-	0.082	12.6	0.0	0.2	11.4	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|529077215|ref|YP_008376218.1|	-	0.091	13.2	0.0	1.2	9.6	0.0	2.3	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Adeno_IVa2	PF02456.15	gi|529077215|ref|YP_008376218.1|	-	0.11	11.3	0.0	1.2	7.9	0.0	2.0	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
Shigella_OspC	PF06128.11	gi|529077215|ref|YP_008376218.1|	-	0.13	12.0	0.0	0.19	11.4	0.0	1.2	1	0	0	1	1	1	0	Shigella	flexneri	OspC	protein
RNA_helicase	PF00910.22	gi|529077215|ref|YP_008376218.1|	-	0.13	12.6	0.0	0.37	11.2	0.0	1.8	2	0	0	2	2	1	0	RNA	helicase
NB-ARC	PF00931.22	gi|529077215|ref|YP_008376218.1|	-	0.13	11.4	0.0	0.24	10.6	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
PPV_E1_C	PF00519.17	gi|529077215|ref|YP_008376218.1|	-	0.21	10.4	0.0	0.34	9.7	0.0	1.2	1	0	0	1	1	1	0	Papillomavirus	helicase
BPD_transp_1	PF00528.22	gi|529077216|ref|YP_008376219.1|	-	1.2e-18	67.5	11.7	1.2e-18	67.5	11.7	4.7	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
HTH_23	PF13384.6	gi|529077216|ref|YP_008376219.1|	-	0.018	14.8	0.0	0.048	13.5	0.0	1.7	1	0	0	1	1	1	0	Homeodomain-like	domain
DUF2304	PF10066.9	gi|529077216|ref|YP_008376219.1|	-	0.058	13.6	0.6	0.058	13.6	0.6	3.4	5	0	0	5	5	5	0	Uncharacterized	conserved	protein	(DUF2304)
Peptidase_A8	PF01252.18	gi|529077216|ref|YP_008376219.1|	-	1	9.6	6.6	15	5.8	0.0	3.7	2	1	1	3	3	3	0	Signal	peptidase	(SPase)	II
BPD_transp_1	PF00528.22	gi|529077217|ref|YP_008376220.1|	-	5.7e-16	58.8	16.2	5.7e-16	58.8	16.2	2.0	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
PBP_like_2	PF12849.7	gi|529077218|ref|YP_008376221.1|	-	1.3e-21	77.5	0.1	2.2e-21	76.8	0.1	1.3	1	0	0	1	1	1	1	PBP	superfamily	domain
PBP_like	PF12727.7	gi|529077218|ref|YP_008376221.1|	-	1.6e-12	46.9	0.0	2.5e-12	46.3	0.0	1.3	1	0	0	1	1	1	1	PBP	superfamily	domain
TAT_signal	PF10518.9	gi|529077218|ref|YP_008376221.1|	-	2e-05	24.2	0.2	4.1e-05	23.2	0.2	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|529077218|ref|YP_008376221.1|	-	0.013	14.8	2.2	0.026	13.9	2.2	1.4	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
PhoU	PF01895.19	gi|529077219|ref|YP_008376222.1|	-	2.9e-20	72.5	6.0	1.5e-16	60.6	1.0	2.4	2	0	0	2	2	2	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|529077219|ref|YP_008376222.1|	-	2.7e-09	36.7	0.0	5.8e-09	35.7	0.0	1.6	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
Bep_C_terminal	PF17841.1	gi|529077219|ref|YP_008376222.1|	-	0.025	14.8	0.0	0.098	12.9	0.0	2.0	2	0	0	2	2	2	0	BID	domain	of	Bartonella	effector	protein	(Bep)
Ribosomal_S8e	PF01201.22	gi|529077220|ref|YP_008376223.1|	-	1.2e-31	109.7	1.6	1.4e-31	109.5	1.6	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S8e
Fer4_15	PF13459.6	gi|529077221|ref|YP_008376224.1|	-	4.8e-16	59.2	6.6	5.4e-16	59.1	6.6	1.0	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|529077221|ref|YP_008376224.1|	-	1.6e-15	57.4	3.0	1.8e-15	57.2	3.0	1.0	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_19	PF06902.11	gi|529077221|ref|YP_008376224.1|	-	0.00014	21.9	0.0	0.00015	21.7	0.0	1.1	1	0	0	1	1	1	1	Divergent	4Fe-4S	mono-cluster
Fer4	PF00037.27	gi|529077221|ref|YP_008376224.1|	-	0.00032	20.4	4.5	0.14	12.0	0.2	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|529077221|ref|YP_008376224.1|	-	0.087	12.9	2.9	1	9.5	0.3	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
DUF2240	PF09999.9	gi|529077222|ref|YP_008376225.1|	-	1.4e-46	157.7	0.0	1.6e-46	157.5	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2240)
A_deaminase	PF00962.22	gi|529077222|ref|YP_008376225.1|	-	0.017	14.5	0.0	0.018	14.4	0.0	1.0	1	0	0	1	1	1	0	Adenosine/AMP	deaminase
DUF3659	PF12396.8	gi|529077223|ref|YP_008376226.1|	-	0.0038	17.1	0.2	0.012	15.6	0.1	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3659)
HAD_2	PF13419.6	gi|529077224|ref|YP_008376227.1|	-	8.9e-25	87.8	0.0	1.1e-24	87.5	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|529077224|ref|YP_008376227.1|	-	1.7e-13	51.3	5.3	4.3e-12	46.8	5.3	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|529077224|ref|YP_008376227.1|	-	1.3e-10	41.2	0.2	3.1e-10	40.0	0.2	1.7	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD	PF12710.7	gi|529077224|ref|YP_008376227.1|	-	4.2e-08	33.8	0.4	6.3e-08	33.2	0.4	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
OMPdecase	PF00215.24	gi|529077225|ref|YP_008376228.1|	-	1.7e-31	109.6	0.0	2.2e-31	109.2	0.0	1.1	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
zf-HIT	PF04438.16	gi|529077226|ref|YP_008376229.1|	-	0.00016	21.5	1.9	0.00016	21.5	1.9	1.9	2	0	0	2	2	2	1	HIT	zinc	finger
zf-B_box	PF00643.24	gi|529077226|ref|YP_008376229.1|	-	0.048	13.8	5.1	0.49	10.6	5.1	2.0	1	1	0	1	1	1	0	B-box	zinc	finger
CarS-like	PF01864.17	gi|529077227|ref|YP_008376230.1|	-	7.4e-47	159.6	0.9	8.7e-47	159.3	0.9	1.0	1	0	0	1	1	1	1	CDP-archaeol	synthase
CTP_transf_1	PF01148.20	gi|529077227|ref|YP_008376230.1|	-	6.6e-05	22.8	0.4	6.6e-05	22.8	0.4	1.9	1	1	1	2	2	2	1	Cytidylyltransferase	family
DUF5324	PF17258.2	gi|529077227|ref|YP_008376230.1|	-	0.12	12.1	0.3	0.15	11.8	0.3	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5324)
RTX	PF02382.15	gi|529077227|ref|YP_008376230.1|	-	0.83	9.3	2.4	1.2	8.7	2.4	1.2	1	0	0	1	1	1	0	N-terminal	domain	in	RTX	protein
BNR	PF02012.20	gi|529077227|ref|YP_008376230.1|	-	1.7	9.0	3.4	18	5.9	0.2	3.1	3	0	0	3	3	3	0	BNR/Asp-box	repeat
Gly-zipper_YMGG	PF13441.6	gi|529077227|ref|YP_008376230.1|	-	3.1	7.6	17.8	6.7	6.5	1.4	2.6	2	1	0	2	2	2	0	YMGG-like	Gly-zipper
MNHE	PF01899.16	gi|529077227|ref|YP_008376230.1|	-	4.8	6.9	7.6	0.53	10.0	2.3	2.2	2	1	0	2	2	2	0	Na+/H+	ion	antiporter	subunit
Porphobil_deam	PF01379.20	gi|529077228|ref|YP_008376231.1|	-	1.7e-63	213.8	0.4	4e-49	166.9	0.2	2.1	2	0	0	2	2	2	2	Porphobilinogen	deaminase,	dipyromethane	cofactor	binding	domain
Porphobil_deamC	PF03900.15	gi|529077228|ref|YP_008376231.1|	-	5.4e-12	45.9	0.2	1.5e-11	44.5	0.2	1.8	1	0	0	1	1	1	1	Porphobilinogen	deaminase,	C-terminal	domain
HEM4	PF02602.15	gi|529077229|ref|YP_008376232.1|	-	1.3e-42	145.8	1.2	1.6e-42	145.4	1.2	1.0	1	0	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
DDE_Tnp_1	PF01609.21	gi|529077230|ref|YP_008376233.1|	-	6.2e-17	62.0	0.0	8.6e-17	61.5	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|529077230|ref|YP_008376233.1|	-	0.0058	16.6	0.0	0.011	15.8	0.0	1.5	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DHHA1	PF02272.19	gi|529077232|ref|YP_008376235.1|	-	3.3e-17	63.2	1.6	4.8e-17	62.7	0.3	1.9	2	0	0	2	2	2	1	DHHA1	domain
DHH	PF01368.20	gi|529077232|ref|YP_008376235.1|	-	0.05	13.8	0.1	0.091	13.0	0.1	1.5	1	0	0	1	1	1	0	DHH	family
PALP	PF00291.25	gi|529077233|ref|YP_008376236.1|	-	4.5e-65	220.0	1.9	5.1e-65	219.8	1.9	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Cys_Met_Meta_PP	PF01053.20	gi|529077234|ref|YP_008376237.1|	-	6e-153	508.9	0.0	6.7e-153	508.7	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.17	gi|529077234|ref|YP_008376237.1|	-	1.8e-07	30.8	0.0	7e-07	28.9	0.0	1.8	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_5	PF00266.19	gi|529077234|ref|YP_008376237.1|	-	4.2e-07	29.2	0.0	6.8e-07	28.6	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Met_gamma_lyase	PF06838.11	gi|529077234|ref|YP_008376237.1|	-	0.00031	19.4	0.0	0.00044	18.9	0.0	1.2	1	0	0	1	1	1	1	Methionine	gamma-lyase
SQS_PSY	PF00494.19	gi|529077235|ref|YP_008376238.1|	-	1.5e-46	159.0	0.9	1.8e-46	158.8	0.9	1.0	1	0	0	1	1	1	1	Squalene/phytoene	synthase
CheC	PF04509.12	gi|529077236|ref|YP_008376239.1|	-	5.7e-12	45.3	0.7	4e-10	39.4	0.0	2.6	2	0	0	2	2	2	2	CheC-like	family
CheX	PF13690.6	gi|529077236|ref|YP_008376239.1|	-	9.2e-08	32.2	0.0	1.9e-07	31.2	0.0	1.5	1	0	0	1	1	1	1	Chemotaxis	phosphatase	CheX
CopD	PF05425.13	gi|529077237|ref|YP_008376240.1|	-	2.7e-08	34.1	4.9	2.7e-08	34.1	4.9	1.9	2	0	0	2	2	2	1	Copper	resistance	protein	D
Ribosomal_S6e	PF01092.19	gi|529077238|ref|YP_008376241.1|	-	2.4e-39	134.1	0.0	2.7e-39	134.0	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S6e
CheF-arch	PF04283.12	gi|529077239|ref|YP_008376242.1|	-	2.8e-70	236.5	0.0	3.8e-70	236.0	0.0	1.2	1	0	0	1	1	1	1	Chemotaxis	signal	transduction	system	protein	F	from	archaea
MarR	PF01047.22	gi|529077239|ref|YP_008376242.1|	-	0.0044	16.9	0.0	0.0079	16.1	0.0	1.4	1	0	0	1	1	1	1	MarR	family
GRAM	PF02893.20	gi|529077239|ref|YP_008376242.1|	-	0.093	12.6	0.0	0.44	10.4	0.0	2.0	2	0	0	2	2	2	0	GRAM	domain
TrmB	PF01978.19	gi|529077239|ref|YP_008376242.1|	-	0.099	12.5	0.0	0.22	11.4	0.0	1.6	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
CheF-arch	PF04283.12	gi|529077240|ref|YP_008376243.1|	-	2.7e-68	230.0	1.9	3.2e-68	229.7	0.9	1.5	2	0	0	2	2	2	1	Chemotaxis	signal	transduction	system	protein	F	from	archaea
bPH_4	PF06713.11	gi|529077240|ref|YP_008376243.1|	-	0.00088	19.3	0.0	0.0027	17.8	0.0	1.8	2	0	0	2	2	2	1	Bacterial	PH	domain
bPH_5	PF10882.8	gi|529077240|ref|YP_008376243.1|	-	0.017	15.2	0.0	4.4	7.4	0.0	2.7	2	1	1	3	3	3	0	Bacterial	PH	domain
DUF5348	PF17295.2	gi|529077240|ref|YP_008376243.1|	-	0.042	13.8	0.0	10	6.1	0.0	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5348)
PASTA	PF03793.19	gi|529077240|ref|YP_008376243.1|	-	0.069	13.0	0.0	0.17	11.8	0.0	1.7	1	0	0	1	1	1	0	PASTA	domain
HEAT_2	PF13646.6	gi|529077241|ref|YP_008376244.1|	-	2.8e-66	219.9	44.0	3.4e-19	69.0	1.1	5.5	2	1	4	6	6	6	6	HEAT	repeats
HEAT_PBS	PF03130.16	gi|529077241|ref|YP_008376244.1|	-	1.5e-23	81.0	23.7	1.4e-05	25.3	0.9	9.2	10	0	0	10	10	10	5	PBS	lyase	HEAT-like	repeat
HEAT	PF02985.22	gi|529077241|ref|YP_008376244.1|	-	1.8e-22	77.5	11.4	0.032	14.5	0.0	10.4	11	0	0	11	11	11	5	HEAT	repeat
HEAT_EZ	PF13513.6	gi|529077241|ref|YP_008376244.1|	-	1.3e-17	63.9	21.7	0.072	13.6	0.1	10.4	8	2	3	11	11	11	7	HEAT-like	repeat
Arm	PF00514.23	gi|529077241|ref|YP_008376244.1|	-	7.5e-13	48.0	0.2	1.6	8.9	0.0	9.2	10	0	0	10	10	10	2	Armadillo/beta-catenin-like	repeat
Cnd1	PF12717.7	gi|529077241|ref|YP_008376244.1|	-	5.8e-11	42.7	7.2	0.0079	16.2	0.1	6.0	3	1	2	6	6	6	3	non-SMC	mitotic	condensation	complex	subunit	1
Adaptin_N	PF01602.20	gi|529077241|ref|YP_008376244.1|	-	5.9e-07	28.4	0.5	0.022	13.3	0.1	4.1	2	1	1	4	4	4	2	Adaptin	N	terminal	region
DnaG_DnaB_bind	PF08278.11	gi|529077241|ref|YP_008376244.1|	-	0.0079	16.8	8.8	1	10.0	1.2	3.3	2	1	1	3	3	3	2	DNA	primase	DnaG	DnaB-binding
Vac14_Fab1_bd	PF12755.7	gi|529077241|ref|YP_008376244.1|	-	0.023	15.3	0.0	79	3.9	0.0	4.3	3	1	1	4	4	4	0	Vacuolar	14	Fab1-binding	region
PSD2	PF07624.11	gi|529077241|ref|YP_008376244.1|	-	0.044	13.6	3.6	0.14	12.0	0.0	3.5	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF1585)
Citrate_synt	PF00285.21	gi|529077241|ref|YP_008376244.1|	-	0.074	12.1	0.6	0.19	10.7	0.1	1.8	2	0	0	2	2	2	0	Citrate	synthase,	C-terminal	domain
DUF5063	PF16702.5	gi|529077241|ref|YP_008376244.1|	-	7	7.0	6.7	23	5.3	0.1	3.2	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF5063)
CheR	PF01739.18	gi|529077242|ref|YP_008376245.1|	-	4.9e-46	156.7	0.0	5.9e-46	156.4	0.0	1.1	1	0	0	1	1	1	1	CheR	methyltransferase,	SAM	binding	domain
CheR_N	PF03705.15	gi|529077242|ref|YP_008376245.1|	-	5.5e-05	22.8	3.6	0.00015	21.4	3.6	1.9	1	0	0	1	1	1	1	CheR	methyltransferase,	all-alpha	domain
Methyltransf_12	PF08242.12	gi|529077242|ref|YP_008376245.1|	-	0.00082	20.1	0.0	0.021	15.6	0.0	2.3	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|529077242|ref|YP_008376245.1|	-	0.0034	18.1	0.0	0.26	12.0	0.0	2.4	1	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|529077242|ref|YP_008376245.1|	-	0.005	16.6	0.0	0.022	14.5	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|529077242|ref|YP_008376245.1|	-	0.18	11.6	0.0	0.25	11.2	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
CheW	PF01584.19	gi|529077243|ref|YP_008376246.1|	-	1.7e-20	73.0	0.4	5.9e-20	71.3	0.4	2.0	1	0	0	1	1	1	1	CheW-like	domain
Hpt	PF01627.23	gi|529077243|ref|YP_008376246.1|	-	3.7e-20	72.0	1.7	1.2e-19	70.3	0.4	2.6	2	0	0	2	2	2	1	Hpt	domain
HATPase_c	PF02518.26	gi|529077243|ref|YP_008376246.1|	-	5.6e-19	68.7	0.1	1.6e-18	67.2	0.0	1.9	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
P2	PF07194.11	gi|529077243|ref|YP_008376246.1|	-	6.3e-08	32.6	0.5	2.5e-07	30.6	0.0	2.3	2	0	0	2	2	2	1	P2	response	regulator	binding	domain
H-kinase_dim	PF02895.14	gi|529077243|ref|YP_008376246.1|	-	1.7e-05	25.1	3.0	1.7e-05	25.1	3.0	2.0	2	0	0	2	2	2	1	Signal	transducing	histidine	kinase,	homodimeric	domain
HATPase_c_2	PF13581.6	gi|529077243|ref|YP_008376246.1|	-	0.00078	19.4	0.2	0.0026	17.7	0.2	2.0	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.6	gi|529077243|ref|YP_008376246.1|	-	0.014	15.3	0.0	0.086	12.8	0.0	2.3	2	1	0	2	2	2	0	GHKL	domain
CheB_methylest	PF01339.17	gi|529077244|ref|YP_008376247.1|	-	7.5e-57	191.8	0.3	1.5e-56	190.7	0.1	1.6	2	0	0	2	2	2	1	CheB	methylesterase
Response_reg	PF00072.24	gi|529077244|ref|YP_008376247.1|	-	4.8e-22	78.2	0.5	1.3e-21	76.9	0.2	1.9	2	0	0	2	2	2	1	Response	regulator	receiver	domain
CheW	PF01584.19	gi|529077245|ref|YP_008376248.1|	-	3.4e-27	94.8	0.6	3.7e-27	94.6	0.6	1.0	1	0	0	1	1	1	1	CheW-like	domain
ATPase	PF06745.13	gi|529077246|ref|YP_008376249.1|	-	2e-48	164.8	0.0	2.3e-48	164.6	0.0	1.0	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|529077246|ref|YP_008376249.1|	-	5.7e-07	29.3	0.0	8e-07	28.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
Rad51	PF08423.11	gi|529077246|ref|YP_008376249.1|	-	0.0012	18.2	0.4	0.0022	17.3	0.3	1.5	1	1	0	1	1	1	1	Rad51
AAA_24	PF13479.6	gi|529077246|ref|YP_008376249.1|	-	0.0091	15.7	0.0	0.015	15.1	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
DnaB_C	PF03796.15	gi|529077246|ref|YP_008376249.1|	-	0.01	15.2	0.0	0.014	14.8	0.0	1.3	1	0	0	1	1	1	0	DnaB-like	helicase	C	terminal	domain
DUF2075	PF09848.9	gi|529077246|ref|YP_008376249.1|	-	0.026	13.8	0.0	0.031	13.5	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
ResIII	PF04851.15	gi|529077246|ref|YP_008376249.1|	-	0.13	12.3	0.0	0.16	11.9	0.0	1.2	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
HTH_20	PF12840.7	gi|529077247|ref|YP_008376250.1|	-	2.6e-09	37.0	0.1	4.9e-09	36.1	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|529077247|ref|YP_008376250.1|	-	0.00059	19.3	0.0	0.00097	18.7	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|529077247|ref|YP_008376250.1|	-	0.0079	16.1	0.0	0.016	15.0	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|529077247|ref|YP_008376250.1|	-	0.012	15.4	0.0	0.024	14.4	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|529077247|ref|YP_008376250.1|	-	0.022	14.7	0.0	0.039	13.9	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
MarR_2	PF12802.7	gi|529077247|ref|YP_008376250.1|	-	0.026	14.4	0.0	0.041	13.8	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HTH_27	PF13463.6	gi|529077247|ref|YP_008376250.1|	-	0.065	13.7	0.1	0.096	13.2	0.1	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Tetraspanin	PF00335.20	gi|529077248|ref|YP_008376251.1|	-	2.4	7.8	7.0	2.6	7.7	7.0	1.1	1	0	0	1	1	1	0	Tetraspanin	family
Arch_flagellin	PF01917.16	gi|529077249|ref|YP_008376252.1|	-	1.9e-36	125.7	10.9	2.2e-36	125.5	10.9	1.0	1	0	0	1	1	1	1	Archaebacterial	flagellin
DUF2574	PF10836.8	gi|529077249|ref|YP_008376252.1|	-	0.11	12.4	0.7	0.26	11.2	0.2	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2574)
Big_9	PF17963.1	gi|529077249|ref|YP_008376252.1|	-	4.5	8.1	13.7	1.1	10.1	2.4	2.4	1	1	1	2	2	2	0	Bacterial	Ig	domain
PMT_2	PF13231.6	gi|529077252|ref|YP_008376255.1|	-	0.0075	16.5	9.0	0.0075	16.5	9.0	3.7	3	2	1	5	5	5	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PrgI	PF12666.7	gi|529077252|ref|YP_008376255.1|	-	0.11	13.2	0.2	0.11	13.2	0.2	6.3	6	2	2	8	8	8	0	PrgI	family	protein
Response_reg	PF00072.24	gi|529077253|ref|YP_008376256.1|	-	4e-32	110.7	0.6	4.5e-32	110.5	0.6	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
QRPTase_C	PF01729.19	gi|529077253|ref|YP_008376256.1|	-	0.064	13.0	2.4	0.51	10.1	2.5	1.9	1	1	1	2	2	2	0	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
CheC	PF04509.12	gi|529077254|ref|YP_008376257.1|	-	4.7e-23	80.8	0.0	1.3e-10	41.0	0.0	2.6	2	0	0	2	2	2	2	CheC-like	family
CheX	PF13690.6	gi|529077254|ref|YP_008376257.1|	-	1.2e-14	54.2	0.1	2.8e-06	27.4	0.0	2.5	2	0	0	2	2	2	2	Chemotaxis	phosphatase	CheX
SDH_C	PF18317.1	gi|529077254|ref|YP_008376257.1|	-	0.042	13.6	0.5	15	5.4	0.0	3.0	3	0	0	3	3	3	0	Shikimate	5'-dehydrogenase	C-terminal	domain
CheD	PF03975.13	gi|529077255|ref|YP_008376258.1|	-	8.8e-29	99.8	0.0	1.1e-28	99.4	0.0	1.1	1	0	0	1	1	1	1	CheD	chemotactic	sensory	transduction
Arch_fla_DE	PF04659.13	gi|529077256|ref|YP_008376259.1|	-	1.4e-28	98.6	0.0	3e-28	97.5	0.0	1.6	1	0	0	1	1	1	1	Archaeal	flagella	protein
FlaC_arch	PF05377.11	gi|529077256|ref|YP_008376259.1|	-	5.7e-22	77.9	1.5	1e-21	77.0	1.5	1.5	1	0	0	1	1	1	1	Flagella	accessory	protein	C	(FlaC)
ZapB	PF06005.12	gi|529077256|ref|YP_008376259.1|	-	0.021	15.3	0.6	0.054	13.9	0.6	1.6	1	0	0	1	1	1	0	Cell	division	protein	ZapB
LPP	PF04728.13	gi|529077256|ref|YP_008376259.1|	-	0.16	12.4	0.2	0.62	10.5	0.2	2.1	1	0	0	1	1	1	0	Lipoprotein	leucine-zipper
bZIP_1	PF00170.21	gi|529077256|ref|YP_008376259.1|	-	0.18	11.9	0.8	0.65	10.1	0.3	1.8	1	1	1	2	2	2	0	bZIP	transcription	factor
DUF1664	PF07889.12	gi|529077256|ref|YP_008376259.1|	-	0.21	11.6	0.2	0.41	10.7	0.2	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
bZIP_2	PF07716.15	gi|529077256|ref|YP_008376259.1|	-	0.57	10.3	1.4	12	6.1	0.2	2.2	1	1	1	2	2	2	0	Basic	region	leucine	zipper
Presenilin	PF01080.17	gi|529077256|ref|YP_008376259.1|	-	0.88	8.3	1.5	1.4	7.6	1.5	1.2	1	0	0	1	1	1	0	Presenilin
DUF948	PF06103.11	gi|529077256|ref|YP_008376259.1|	-	7.5	6.9	6.0	0.59	10.4	0.4	2.0	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
Arch_flagellin	PF01917.16	gi|529077257|ref|YP_008376260.1|	-	3.6e-08	33.8	3.1	4.4e-08	33.5	3.1	1.2	1	0	0	1	1	1	1	Archaebacterial	flagellin
DUF4352	PF11611.8	gi|529077257|ref|YP_008376260.1|	-	0.002	18.4	0.6	0.0028	17.9	0.6	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4352)
DUF1859	PF08948.10	gi|529077257|ref|YP_008376260.1|	-	0.0085	16.0	1.5	2.8	7.9	0.6	2.1	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF1859)
Arch_flagellin	PF01917.16	gi|529077258|ref|YP_008376261.1|	-	2.5e-25	89.5	3.9	2.9e-25	89.4	3.9	1.0	1	0	0	1	1	1	1	Archaebacterial	flagellin
CARDB	PF07705.11	gi|529077258|ref|YP_008376261.1|	-	0.0022	18.2	0.1	0.0046	17.2	0.1	1.5	1	1	0	1	1	1	1	CARDB
TPPK_C	PF12555.8	gi|529077258|ref|YP_008376261.1|	-	0.36	10.9	2.4	0.68	10.0	2.4	1.4	1	0	0	1	1	1	0	Thiamine	pyrophosphokinase	C	terminal
ATPase	PF06745.13	gi|529077259|ref|YP_008376262.1|	-	6.2e-14	51.9	0.1	9.8e-14	51.2	0.1	1.4	1	1	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|529077259|ref|YP_008376262.1|	-	4.3e-07	29.7	0.0	7.5e-07	28.9	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
NACHT	PF05729.12	gi|529077259|ref|YP_008376262.1|	-	0.00047	20.1	0.1	0.0028	17.6	0.1	1.9	1	1	0	1	1	1	1	NACHT	domain
AAA_22	PF13401.6	gi|529077259|ref|YP_008376262.1|	-	0.0006	20.1	0.0	0.00097	19.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Rad51	PF08423.11	gi|529077259|ref|YP_008376262.1|	-	0.018	14.3	0.2	0.053	12.8	0.2	1.8	1	1	0	1	1	1	0	Rad51
AAA_16	PF13191.6	gi|529077259|ref|YP_008376262.1|	-	0.031	14.7	0.1	0.066	13.6	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
TIP49	PF06068.13	gi|529077259|ref|YP_008376262.1|	-	0.034	13.3	0.0	5.2	6.2	0.0	2.3	2	0	0	2	2	2	0	TIP49	P-loop	domain
AAA	PF00004.29	gi|529077259|ref|YP_008376262.1|	-	0.061	13.7	0.4	0.13	12.7	0.4	1.7	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
TsaE	PF02367.17	gi|529077259|ref|YP_008376262.1|	-	0.073	13.1	0.0	0.13	12.3	0.0	1.6	1	1	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
ArsA_ATPase	PF02374.15	gi|529077259|ref|YP_008376262.1|	-	0.084	12.0	0.0	0.14	11.3	0.0	1.4	1	0	0	1	1	1	0	Anion-transporting	ATPase
FF	PF01846.19	gi|529077259|ref|YP_008376262.1|	-	0.18	12.0	0.4	0.44	10.8	0.1	1.8	2	0	0	2	2	2	0	FF	domain
T2SSE	PF00437.20	gi|529077260|ref|YP_008376263.1|	-	4.4e-43	147.3	0.0	6.3e-43	146.8	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_16	PF13191.6	gi|529077260|ref|YP_008376263.1|	-	0.0012	19.3	0.0	0.006	17.0	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
ABC_tran	PF00005.27	gi|529077260|ref|YP_008376263.1|	-	0.007	16.9	0.0	0.052	14.1	0.0	2.3	3	0	0	3	3	3	1	ABC	transporter
AAA_22	PF13401.6	gi|529077260|ref|YP_008376263.1|	-	0.007	16.6	0.0	0.021	15.1	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_7	PF12775.7	gi|529077260|ref|YP_008376263.1|	-	0.015	14.8	0.0	0.025	14.1	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
Dynamin_N	PF00350.23	gi|529077260|ref|YP_008376263.1|	-	0.044	13.8	0.0	0.09	12.8	0.0	1.5	1	0	0	1	1	1	0	Dynamin	family
AAA_15	PF13175.6	gi|529077260|ref|YP_008376263.1|	-	0.045	13.5	0.0	0.53	9.9	0.0	2.2	2	0	0	2	2	2	0	AAA	ATPase	domain
AIG1	PF04548.16	gi|529077260|ref|YP_008376263.1|	-	0.066	12.5	0.0	0.24	10.7	0.0	1.9	2	0	0	2	2	2	0	AIG1	family
KIX	PF02172.16	gi|529077260|ref|YP_008376263.1|	-	0.11	12.7	0.2	0.27	11.5	0.2	1.5	1	0	0	1	1	1	0	KIX	domain
FtsK_SpoIIIE	PF01580.18	gi|529077260|ref|YP_008376263.1|	-	0.15	11.4	0.0	0.3	10.4	0.0	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_29	PF13555.6	gi|529077260|ref|YP_008376263.1|	-	0.19	11.5	0.0	0.38	10.5	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
T2SSF	PF00482.23	gi|529077261|ref|YP_008376264.1|	-	5.5e-19	68.3	2.1	1.2e-09	38.2	0.3	2.9	2	0	0	2	2	2	2	Type	II	secretion	system	(T2SS),	protein	F
AAA_32	PF13654.6	gi|529077261|ref|YP_008376264.1|	-	0.027	13.3	0.0	0.048	12.5	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
DUF3185	PF11381.8	gi|529077263|ref|YP_008376266.1|	-	0.035	14.1	4.6	1.2	9.2	1.0	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3185)
RseC_MucC	PF04246.12	gi|529077263|ref|YP_008376266.1|	-	0.25	11.3	4.9	0.29	11.1	4.9	1.1	1	0	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
MatE	PF01554.18	gi|529077264|ref|YP_008376267.1|	-	2.2e-60	203.0	34.2	9.8e-36	122.8	16.2	2.4	2	0	0	2	2	2	2	MatE
Polysacc_synt_C	PF14667.6	gi|529077264|ref|YP_008376267.1|	-	0.0019	18.2	39.9	0.05	13.7	21.7	5.2	3	1	1	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
TetR_C_6	PF13977.6	gi|529077265|ref|YP_008376268.1|	-	1.3e-20	73.7	3.2	1.3e-20	73.7	3.2	1.5	2	0	0	2	2	2	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|529077265|ref|YP_008376268.1|	-	3.7e-10	39.4	0.4	6.6e-10	38.6	0.4	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_24	PF17932.1	gi|529077265|ref|YP_008376268.1|	-	2.3e-06	27.9	0.8	8.2e-06	26.1	0.1	2.2	2	1	1	3	3	3	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_37	PF18665.1	gi|529077265|ref|YP_008376268.1|	-	0.0079	16.8	0.0	0.031	14.9	0.0	1.8	1	1	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_27	PF17935.1	gi|529077265|ref|YP_008376268.1|	-	0.01	15.9	2.3	0.013	15.6	0.4	2.3	2	1	1	3	3	3	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_4	PF08359.11	gi|529077265|ref|YP_008376268.1|	-	0.024	14.8	0.0	0.046	13.9	0.0	1.4	1	0	0	1	1	1	0	YsiA-like	protein,	C-terminal	region
Sigma70_r4	PF04545.16	gi|529077265|ref|YP_008376268.1|	-	0.036	13.6	0.0	0.075	12.6	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
DUF294_C	PF10335.9	gi|529077265|ref|YP_008376268.1|	-	0.051	13.4	0.5	8.1	6.2	0.2	2.2	2	0	0	2	2	2	0	Putative	nucleotidyltransferase	substrate	binding	domain
TetR_C_31	PF17940.1	gi|529077265|ref|YP_008376268.1|	-	0.24	11.6	6.8	0.11	12.7	3.9	1.9	2	1	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_15	PF17918.1	gi|529077265|ref|YP_008376268.1|	-	0.93	10.3	7.1	0.99	10.2	4.8	2.2	2	1	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
zinc_ribbon_2	PF13240.6	gi|529077266|ref|YP_008376269.1|	-	1.4e-05	24.6	0.4	2e-05	24.1	0.4	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|529077266|ref|YP_008376269.1|	-	1.7e-05	24.1	0.7	2.4e-05	23.6	0.7	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|529077266|ref|YP_008376269.1|	-	9e-05	22.4	0.3	0.00012	22.0	0.3	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
TM2	PF05154.16	gi|529077266|ref|YP_008376269.1|	-	0.0015	18.9	0.2	0.0023	18.2	0.2	1.3	1	0	0	1	1	1	1	TM2	domain
zinc_ribbon_15	PF17032.5	gi|529077266|ref|YP_008376269.1|	-	0.0024	18.6	0.1	0.0033	18.2	0.1	1.2	1	0	0	1	1	1	1	zinc-ribbon	family
Zn-ribbon_8	PF09723.10	gi|529077266|ref|YP_008376269.1|	-	0.01	16.0	2.3	0.094	12.9	0.6	2.2	1	1	1	2	2	2	0	Zinc	ribbon	domain
zinc-ribbons_6	PF07191.12	gi|529077266|ref|YP_008376269.1|	-	0.058	13.4	0.4	0.086	12.8	0.4	1.2	1	0	0	1	1	1	0	zinc-ribbons
Nudix_N_2	PF14803.6	gi|529077266|ref|YP_008376269.1|	-	0.076	12.9	1.1	4.6	7.2	0.1	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
OrfB_Zn_ribbon	PF07282.11	gi|529077266|ref|YP_008376269.1|	-	0.15	12.0	0.0	0.66	9.9	0.1	1.9	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
Rad50_zn_hook	PF04423.14	gi|529077266|ref|YP_008376269.1|	-	0.15	11.9	2.1	1.9	8.4	0.1	2.2	2	0	0	2	2	2	0	Rad50	zinc	hook	motif
FdhE	PF04216.12	gi|529077266|ref|YP_008376269.1|	-	0.16	11.9	1.1	0.25	11.2	0.1	1.6	1	1	1	2	2	2	0	Protein	involved	in	formate	dehydrogenase	formation
HypA	PF01155.19	gi|529077266|ref|YP_008376269.1|	-	0.17	11.9	0.0	0.23	11.5	0.0	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-RING_7	PF02591.15	gi|529077266|ref|YP_008376269.1|	-	0.19	11.9	1.1	1.7	8.9	0.3	2.2	1	1	1	2	2	2	0	C4-type	zinc	ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|529077266|ref|YP_008376269.1|	-	0.24	11.2	2.1	8.6	6.2	0.4	2.3	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Sulfatase	PF00884.23	gi|529077267|ref|YP_008376270.1|	-	3.4e-36	125.2	0.1	4.7e-36	124.7	0.1	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|529077267|ref|YP_008376270.1|	-	4.8e-09	36.3	0.0	9.4e-06	25.4	0.0	2.3	2	0	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
HAT	PF02184.16	gi|529077267|ref|YP_008376270.1|	-	0.0086	16.0	0.0	0.057	13.4	0.0	2.3	2	0	0	2	2	2	1	HAT	(Half-A-TPR)	repeat
DUF1501	PF07394.12	gi|529077267|ref|YP_008376270.1|	-	0.0088	15.1	0.1	0.018	14.1	0.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1501)
GtrA	PF04138.14	gi|529077268|ref|YP_008376271.1|	-	5.2e-22	78.3	11.4	6e-22	78.1	11.4	1.0	1	0	0	1	1	1	1	GtrA-like	protein
DUF2715	PF10895.8	gi|529077268|ref|YP_008376271.1|	-	0.015	15.0	1.3	0.017	14.8	1.3	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2715)
TrmB	PF01978.19	gi|529077269|ref|YP_008376272.1|	-	4.2e-08	32.9	0.0	6.8e-08	32.3	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Penicillinase_R	PF03965.16	gi|529077269|ref|YP_008376272.1|	-	0.0041	17.5	0.0	0.0061	16.9	0.0	1.3	1	0	0	1	1	1	1	Penicillinase	repressor
HTH_24	PF13412.6	gi|529077269|ref|YP_008376272.1|	-	0.0049	16.4	0.0	0.032	13.8	0.0	2.1	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|529077269|ref|YP_008376272.1|	-	0.0092	15.9	0.0	0.017	15.0	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_29	PF13551.6	gi|529077269|ref|YP_008376272.1|	-	0.016	15.2	0.0	0.071	13.1	0.0	2.1	2	1	1	3	3	3	0	Winged	helix-turn	helix
HTH_IclR	PF09339.10	gi|529077269|ref|YP_008376272.1|	-	0.018	14.8	0.0	0.086	12.7	0.0	2.1	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
DUF374	PF04028.13	gi|529077269|ref|YP_008376272.1|	-	0.034	13.7	0.0	0.069	12.7	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF374)
Rrf2	PF02082.20	gi|529077269|ref|YP_008376272.1|	-	0.035	14.4	0.0	0.65	10.4	0.0	2.2	2	0	0	2	2	2	0	Transcriptional	regulator
Cdc6_C	PF09079.11	gi|529077269|ref|YP_008376272.1|	-	0.047	13.7	0.0	0.13	12.3	0.0	1.8	2	0	0	2	2	2	0	CDC6,	C	terminal	winged	helix	domain
FaeA	PF04703.12	gi|529077269|ref|YP_008376272.1|	-	0.062	13.7	0.0	0.12	12.7	0.0	1.5	1	0	0	1	1	1	0	FaeA-like	protein
TetR_N	PF00440.23	gi|529077269|ref|YP_008376272.1|	-	0.068	13.0	0.0	0.2	11.4	0.0	1.8	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
HTH_28	PF13518.6	gi|529077269|ref|YP_008376272.1|	-	0.073	13.2	0.1	0.2	11.8	0.0	2.0	2	0	0	2	2	1	0	Helix-turn-helix	domain
DUF3408	PF11888.8	gi|529077269|ref|YP_008376272.1|	-	0.095	12.8	0.1	0.24	11.6	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3408)
HTH_20	PF12840.7	gi|529077269|ref|YP_008376272.1|	-	0.1	12.6	0.0	0.22	11.6	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_43	PF09904.9	gi|529077269|ref|YP_008376272.1|	-	0.13	12.2	0.0	0.29	11.1	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn	helix
DUF4423	PF14394.6	gi|529077269|ref|YP_008376272.1|	-	0.17	11.6	0.0	0.23	11.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
PIN_4	PF13638.6	gi|529077270|ref|YP_008376273.1|	-	0.084	13.2	0.0	0.11	12.8	0.0	1.1	1	0	0	1	1	1	0	PIN	domain
DHHA1	PF02272.19	gi|529077271|ref|YP_008376274.1|	-	0.017	15.5	2.2	0.026	14.9	0.8	2.1	2	1	0	2	2	2	0	DHHA1	domain
PaRep2a	PF07903.11	gi|529077271|ref|YP_008376274.1|	-	0.14	12.0	0.0	0.3	10.9	0.0	1.5	1	0	0	1	1	1	0	PaRep2a	protein
Usp	PF00582.26	gi|529077272|ref|YP_008376275.1|	-	4.1e-33	114.9	3.7	4.6e-33	114.7	3.7	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
AIRC	PF00731.20	gi|529077272|ref|YP_008376275.1|	-	0.083	12.5	0.1	0.11	12.1	0.1	1.2	1	0	0	1	1	1	0	AIR	carboxylase
Usp	PF00582.26	gi|529077273|ref|YP_008376276.1|	-	1.6e-18	67.6	3.3	2e-18	67.2	3.3	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
Acetyltransf_1	PF00583.25	gi|529077274|ref|YP_008376277.1|	-	3.4e-19	69.2	0.0	6.6e-19	68.3	0.0	1.5	1	1	1	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|529077274|ref|YP_008376277.1|	-	8.1e-11	42.0	0.0	1.1e-10	41.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|529077274|ref|YP_008376277.1|	-	2.6e-10	40.6	0.0	4.1e-10	40.0	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|529077274|ref|YP_008376277.1|	-	1e-08	35.9	0.0	1.4e-08	35.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|529077274|ref|YP_008376277.1|	-	3.1e-05	24.1	0.0	4e-05	23.8	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|529077274|ref|YP_008376277.1|	-	9.8e-05	22.2	0.0	0.00021	21.2	0.0	1.5	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_6	PF13480.7	gi|529077274|ref|YP_008376277.1|	-	0.0045	17.2	0.5	0.0072	16.5	0.5	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|529077274|ref|YP_008376277.1|	-	0.0048	17.0	0.0	0.23	11.5	0.0	2.2	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.6	gi|529077274|ref|YP_008376277.1|	-	0.041	13.6	0.0	0.33	10.6	0.0	2.2	1	1	1	2	2	2	0	Acetyltransferase	(GNAT)	domain
Usp	PF00582.26	gi|529077275|ref|YP_008376278.1|	-	9.7e-16	58.6	0.3	2.1e-13	51.0	0.3	2.0	1	1	0	1	1	1	1	Universal	stress	protein	family
mIF3	PF14877.6	gi|529077275|ref|YP_008376278.1|	-	0.088	12.5	0.0	0.12	12.1	0.0	1.1	1	0	0	1	1	1	0	Mitochondrial	translation	initiation	factor
UPF0547	PF10571.9	gi|529077276|ref|YP_008376279.1|	-	0.1	12.7	0.4	0.19	11.8	0.4	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
Zn-ribbon_8	PF09723.10	gi|529077276|ref|YP_008376279.1|	-	0.14	12.2	0.1	0.36	11.0	0.1	1.7	1	0	0	1	1	1	0	Zinc	ribbon	domain
Amidohydro_1	PF01979.20	gi|529077277|ref|YP_008376280.1|	-	1.7e-22	80.2	0.0	1.9e-21	76.7	0.0	2.1	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|529077277|ref|YP_008376280.1|	-	1.5e-17	64.2	11.5	9.9e-10	38.5	6.9	2.5	1	1	1	2	2	2	2	Amidohydrolase	family
TatD_DNase	PF01026.21	gi|529077277|ref|YP_008376280.1|	-	0.04	13.3	0.4	1.2	8.4	0.3	2.7	1	1	0	1	1	1	0	TatD	related	DNase
DUF4432	PF14486.6	gi|529077278|ref|YP_008376281.1|	-	5.9e-20	71.3	0.0	5.2e-19	68.2	0.0	1.9	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4432)
DUF1926	PF09095.11	gi|529077278|ref|YP_008376281.1|	-	0.084	12.5	0.0	1.3	8.5	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1926)
DUF5107	PF17128.4	gi|529077278|ref|YP_008376281.1|	-	0.12	11.5	0.0	1.1	8.3	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5107)
Acetyltransf_1	PF00583.25	gi|529077279|ref|YP_008376282.1|	-	1.6e-17	63.8	0.1	1.9e-17	63.6	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|529077279|ref|YP_008376282.1|	-	1.9e-13	50.7	0.1	2.5e-13	50.3	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|529077279|ref|YP_008376282.1|	-	6.3e-12	45.6	0.0	8.5e-12	45.1	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.7	gi|529077279|ref|YP_008376282.1|	-	7.1e-07	29.5	2.1	9.4e-07	29.1	1.6	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|529077279|ref|YP_008376282.1|	-	9.2e-06	25.8	0.0	0.00015	21.8	0.0	2.0	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|529077279|ref|YP_008376282.1|	-	1.3e-05	25.1	0.0	1.9e-05	24.6	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
GNAT_acetyltr_2	PF13718.6	gi|529077279|ref|YP_008376282.1|	-	0.00048	19.6	0.0	0.00062	19.2	0.0	1.1	1	0	0	1	1	1	1	GNAT	acetyltransferase	2
Acetyltransf_4	PF13420.7	gi|529077279|ref|YP_008376282.1|	-	0.0061	16.7	0.0	0.0078	16.4	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Isochorismatase	PF00857.20	gi|529077280|ref|YP_008376283.1|	-	8.9e-46	156.2	0.1	1e-45	156.1	0.1	1.0	1	0	0	1	1	1	1	Isochorismatase	family
Peptidase_M76	PF09768.9	gi|529077281|ref|YP_008376284.1|	-	0.099	12.4	0.0	0.17	11.7	0.0	1.3	1	0	0	1	1	1	0	Peptidase	M76	family
Nop14	PF04147.12	gi|529077281|ref|YP_008376284.1|	-	9.3	4.3	7.1	13	3.8	7.1	1.1	1	0	0	1	1	1	0	Nop14-like	family
PIN	PF01850.21	gi|529077282|ref|YP_008376285.1|	-	0.00095	19.7	0.1	0.0012	19.3	0.1	1.1	1	0	0	1	1	1	1	PIN	domain
MazE_antitoxin	PF04014.18	gi|529077283|ref|YP_008376286.1|	-	3.7e-11	42.7	0.1	6.4e-11	41.9	0.1	1.4	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|529077283|ref|YP_008376286.1|	-	0.00017	21.9	0.0	0.0002	21.7	0.0	1.2	1	0	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
QRPTase_C	PF01729.19	gi|529077284|ref|YP_008376287.1|	-	2.2e-17	63.3	0.0	3.3e-17	62.8	0.0	1.3	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.16	gi|529077284|ref|YP_008376287.1|	-	0.00062	19.8	0.0	0.0023	17.9	0.0	1.9	2	0	0	2	2	2	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
DHDPS	PF00701.22	gi|529077285|ref|YP_008376288.1|	-	1.2e-88	296.5	0.0	1.4e-88	296.4	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
ThiG	PF05690.14	gi|529077285|ref|YP_008376288.1|	-	0.0047	16.3	0.0	0.0075	15.6	0.0	1.2	1	0	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
NMO	PF03060.15	gi|529077285|ref|YP_008376288.1|	-	0.045	13.1	0.3	0.072	12.5	0.3	1.3	1	0	0	1	1	1	0	Nitronate	monooxygenase
Peripla_BP_1	PF00532.21	gi|529077285|ref|YP_008376288.1|	-	0.14	11.5	0.0	0.29	10.5	0.0	1.5	1	0	0	1	1	1	0	Periplasmic	binding	proteins	and	sugar	binding	domain	of	LacI	family
DUF3871	PF12987.7	gi|529077285|ref|YP_008376288.1|	-	0.26	10.0	0.0	0.67	8.7	0.0	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function,	B.	Theta	Gene	description	(DUF3871)
DapB_C	PF05173.14	gi|529077286|ref|YP_008376289.1|	-	8.4e-39	132.3	0.0	1.2e-38	131.9	0.0	1.2	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	C-terminus
DapB_N	PF01113.20	gi|529077286|ref|YP_008376289.1|	-	3.4e-26	91.8	0.4	6.4e-26	90.9	0.4	1.5	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Sacchrp_dh_NADP	PF03435.18	gi|529077286|ref|YP_008376289.1|	-	1.7e-05	25.1	1.3	8.5e-05	22.8	1.3	2.1	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
GFO_IDH_MocA	PF01408.22	gi|529077286|ref|YP_008376289.1|	-	0.0027	18.5	0.2	0.0058	17.4	0.2	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Peripla_BP_6	PF13458.6	gi|529077286|ref|YP_008376289.1|	-	0.0077	15.9	2.1	0.027	14.1	2.2	1.7	1	1	1	2	2	2	1	Periplasmic	binding	protein
Epimerase	PF01370.21	gi|529077286|ref|YP_008376289.1|	-	0.011	15.2	0.4	0.027	13.9	0.1	1.8	1	1	1	2	2	2	0	NAD	dependent	epimerase/dehydratase	family
Gp_dh_N	PF00044.24	gi|529077286|ref|YP_008376289.1|	-	0.04	14.3	0.1	0.12	12.7	0.1	1.8	1	0	0	1	1	1	0	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
RmlD_sub_bind	PF04321.17	gi|529077286|ref|YP_008376289.1|	-	0.074	12.1	0.8	0.31	10.1	0.8	1.9	1	1	0	1	1	1	0	RmlD	substrate	binding	domain
CoA_binding_2	PF13380.6	gi|529077286|ref|YP_008376289.1|	-	0.17	12.4	0.6	0.32	11.5	0.5	1.6	1	1	0	1	1	1	0	CoA	binding	domain
THDPS_N_2	PF14805.6	gi|529077287|ref|YP_008376290.1|	-	3.7e-25	87.9	1.1	6.2e-25	87.2	1.1	1.4	1	0	0	1	1	1	1	Tetrahydrodipicolinate	N-succinyltransferase	N-terminal
Hexapep	PF00132.24	gi|529077287|ref|YP_008376290.1|	-	4.8e-12	45.1	8.4	2.1e-06	27.2	2.7	3.5	3	0	0	3	3	3	3	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|529077287|ref|YP_008376290.1|	-	7.4e-05	22.4	14.2	0.0062	16.3	1.0	3.4	2	1	2	4	4	4	2	Hexapeptide	repeat	of	succinyl-transferase
Unstab_antitox	PF09720.10	gi|529077287|ref|YP_008376290.1|	-	0.045	13.8	2.1	0.11	12.6	2.1	1.6	1	0	0	1	1	1	0	Putative	addiction	module	component
PIN	PF01850.21	gi|529077288|ref|YP_008376291.1|	-	2.1e-08	34.7	3.3	2.7e-08	34.3	3.3	1.1	1	0	0	1	1	1	1	PIN	domain
MazE_antitoxin	PF04014.18	gi|529077289|ref|YP_008376292.1|	-	0.0029	17.5	0.4	0.0049	16.8	0.4	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
RNase_HII	PF01351.18	gi|529077290|ref|YP_008376293.1|	-	3.7e-38	131.3	0.0	4.4e-38	131.1	0.0	1.0	1	0	0	1	1	1	1	Ribonuclease	HII
THUMP	PF02926.17	gi|529077291|ref|YP_008376294.1|	-	1.8e-09	37.9	0.0	4.2e-09	36.6	0.0	1.6	2	0	0	2	2	2	1	THUMP	domain
DnaJ_CXXCXGXG	PF00684.19	gi|529077291|ref|YP_008376294.1|	-	0.0019	18.5	2.1	0.011	16.1	0.2	2.6	3	0	0	3	3	3	1	DnaJ	central	domain
Anti-TRAP	PF15777.5	gi|529077291|ref|YP_008376294.1|	-	0.072	13.1	5.9	0.095	12.7	1.5	2.5	2	0	0	2	2	2	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
DNA_pol3_a_NI	PF14480.6	gi|529077291|ref|YP_008376294.1|	-	0.14	12.1	0.0	0.26	11.3	0.0	1.4	1	0	0	1	1	1	0	DNA	polymerase	III	polC-type	N-terminus	I
BacA	PF02673.18	gi|529077292|ref|YP_008376295.1|	-	6.1e-47	160.5	14.2	7.5e-47	160.2	14.2	1.0	1	0	0	1	1	1	1	Bacitracin	resistance	protein	BacA
MitoNEET_N	PF10660.9	gi|529077292|ref|YP_008376295.1|	-	0.06	13.4	6.7	3.3	7.8	0.6	2.9	2	0	0	2	2	2	0	Iron-containing	outer	mitochondrial	membrane	protein	N-terminus
Polysacc_synt	PF01943.17	gi|529077293|ref|YP_008376296.1|	-	1.9e-06	27.5	0.4	2.4e-06	27.2	0.2	1.3	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.6	gi|529077293|ref|YP_008376296.1|	-	4.4	7.4	12.1	0.16	12.0	5.3	1.8	2	0	0	2	2	2	0	Polysaccharide	biosynthesis	C-terminal	domain
CheF-arch	PF04283.12	gi|529077294|ref|YP_008376297.1|	-	7.7e-44	150.0	0.0	1.1e-43	149.5	0.0	1.2	1	0	0	1	1	1	1	Chemotaxis	signal	transduction	system	protein	F	from	archaea
CENP-Q	PF13094.6	gi|529077294|ref|YP_008376297.1|	-	0.054	13.7	0.1	0.081	13.1	0.1	1.2	1	0	0	1	1	1	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
TrmB	PF01978.19	gi|529077294|ref|YP_008376297.1|	-	0.16	11.9	0.5	0.34	10.8	0.5	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Glyco_hydro_10	PF00331.20	gi|529077295|ref|YP_008376298.1|	-	2.1e-25	89.6	0.0	3.1e-25	89.0	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	10
Dockerin_1	PF00404.18	gi|529077295|ref|YP_008376298.1|	-	4.1e-07	30.1	3.4	1.7e-06	28.1	3.4	2.2	1	0	0	1	1	1	1	Dockerin	type	I	domain
CarboxypepD_reg	PF13620.6	gi|529077295|ref|YP_008376298.1|	-	0.00014	22.1	3.0	0.013	15.7	0.4	3.0	2	0	0	2	2	2	2	Carboxypeptidase	regulatory-like	domain
TAT_signal	PF10518.9	gi|529077295|ref|YP_008376298.1|	-	0.01	15.6	7.2	0.029	14.2	7.2	1.8	1	1	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF3823	PF12866.7	gi|529077295|ref|YP_008376298.1|	-	0.042	14.1	0.0	0.12	12.7	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3823)	N-terminal	domain
EF-hand_6	PF13405.6	gi|529077295|ref|YP_008376298.1|	-	0.062	13.3	2.9	0.11	12.5	0.1	2.8	2	1	1	3	3	3	0	EF-hand	domain
Glyco_hydro_10	PF00331.20	gi|529077296|ref|YP_008376299.1|	-	6.4e-35	120.8	1.9	1.2e-34	119.9	1.9	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	10
Dockerin_1	PF00404.18	gi|529077296|ref|YP_008376299.1|	-	3e-06	27.3	1.7	1e-05	25.6	1.7	2.0	1	0	0	1	1	1	1	Dockerin	type	I	domain
TAT_signal	PF10518.9	gi|529077296|ref|YP_008376299.1|	-	0.00012	21.7	2.0	0.00035	20.3	2.0	1.7	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
CarboxypepD_reg	PF13620.6	gi|529077296|ref|YP_008376299.1|	-	0.00035	20.8	0.7	0.19	12.0	0.0	2.8	2	0	0	2	2	2	2	Carboxypeptidase	regulatory-like	domain
DUF3823	PF12866.7	gi|529077296|ref|YP_008376299.1|	-	0.015	15.6	0.1	0.084	13.2	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3823)	N-terminal	domain
EF-hand_6	PF13405.6	gi|529077296|ref|YP_008376299.1|	-	0.16	12.0	1.9	1.2	9.3	0.0	3.0	2	1	0	2	2	2	0	EF-hand	domain
Peptidase_S8	PF00082.22	gi|529077297|ref|YP_008376300.1|	-	1.7e-38	132.6	13.0	4.6e-38	131.2	13.0	1.7	1	0	0	1	1	1	1	Subtilase	family
CARDB	PF07705.11	gi|529077297|ref|YP_008376300.1|	-	4.5e-18	65.4	20.2	2.3e-07	31.0	0.2	5.3	5	0	0	5	5	5	3	CARDB
A2M	PF00207.22	gi|529077297|ref|YP_008376300.1|	-	0.0042	16.9	1.1	32	4.5	0.0	4.1	5	0	0	5	5	5	0	Alpha-2-macroglobulin	family
Cna_B	PF05738.13	gi|529077297|ref|YP_008376300.1|	-	0.007	16.9	0.5	9.5	6.8	0.1	3.5	3	0	0	3	3	3	1	Cna	protein	B-type	domain
Fn3-like	PF14310.6	gi|529077297|ref|YP_008376300.1|	-	0.0076	16.3	1.3	3.2	7.9	0.0	4.9	5	0	0	5	5	5	1	Fibronectin	type	III-like	domain
DUF3416	PF11896.8	gi|529077297|ref|YP_008376300.1|	-	0.041	14.2	0.5	4.9	7.4	0.1	2.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3416)
TRAP_beta	PF05753.14	gi|529077297|ref|YP_008376300.1|	-	0.083	12.3	0.9	2.9	7.3	0.0	2.9	3	0	0	3	3	3	0	Translocon-associated	protein	beta	(TRAPB)
DUF3992	PF13157.6	gi|529077297|ref|YP_008376300.1|	-	0.76	10.6	15.2	2.3	9.0	4.6	3.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3992)
TTR-52	PF01060.23	gi|529077300|ref|YP_008376303.1|	-	0.062	14.0	4.8	14	6.4	0.1	4.5	4	1	0	4	4	4	0	Transthyretin-like	family
FixG_C	PF11614.8	gi|529077300|ref|YP_008376303.1|	-	1.3	9.2	9.8	1.2	9.4	0.7	3.1	3	0	0	3	3	3	0	IG-like	fold	at	C-terminal	of	FixG,	putative	oxidoreductase
EMP24_GP25L	PF01105.24	gi|529077300|ref|YP_008376303.1|	-	4.4	7.2	12.9	11	6.0	0.3	4.0	3	1	1	4	4	4	0	emp24/gp25L/p24	family/GOLD
Atg14	PF10186.9	gi|529077301|ref|YP_008376304.1|	-	1.6e-05	24.1	15.9	0.0028	16.8	1.7	2.1	1	1	1	2	2	2	2	Vacuolar	sorting	38	and	autophagy-related	subunit	14
AAA_13	PF13166.6	gi|529077301|ref|YP_008376304.1|	-	3.6e-05	22.7	9.9	6e-05	21.9	9.9	1.2	1	0	0	1	1	1	1	AAA	domain
PGF-CTERM	PF18204.1	gi|529077301|ref|YP_008376304.1|	-	9.9e-05	22.2	7.3	0.00018	21.3	7.3	1.4	1	0	0	1	1	1	1	PGF-CTERM	motif
FPP	PF05911.11	gi|529077301|ref|YP_008376304.1|	-	0.00039	18.8	19.0	0.00073	17.9	19.0	1.3	1	0	0	1	1	1	1	Filament-like	plant	protein,	long	coiled-coil
HMMR_N	PF15905.5	gi|529077301|ref|YP_008376304.1|	-	0.00049	19.7	18.2	0.00083	18.9	18.2	1.2	1	0	0	1	1	1	1	Hyaluronan	mediated	motility	receptor	N-terminal
UPF0242	PF06785.11	gi|529077301|ref|YP_008376304.1|	-	0.0014	18.8	16.5	0.0014	18.8	16.5	2.1	1	1	1	2	2	2	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
TMF_DNA_bd	PF12329.8	gi|529077301|ref|YP_008376304.1|	-	0.0018	18.2	11.2	0.0018	18.2	11.2	3.3	2	1	1	3	3	3	1	TATA	element	modulatory	factor	1	DNA	binding
NYD-SP28	PF14772.6	gi|529077301|ref|YP_008376304.1|	-	0.0029	17.6	2.2	0.0029	17.6	2.2	3.4	2	1	1	3	3	3	2	Sperm	tail
KASH_CCD	PF14662.6	gi|529077301|ref|YP_008376304.1|	-	0.0032	17.3	21.9	0.17	11.7	5.9	2.3	1	1	1	2	2	2	2	Coiled-coil	region	of	CCDC155	or	KASH
Spc7	PF08317.11	gi|529077301|ref|YP_008376304.1|	-	0.0076	15.2	25.3	0.089	11.7	25.3	2.1	1	1	0	1	1	1	1	Spc7	kinetochore	protein
DUF1664	PF07889.12	gi|529077301|ref|YP_008376304.1|	-	0.017	15.2	14.5	0.27	11.3	1.8	2.9	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1664)
DUF641	PF04859.12	gi|529077301|ref|YP_008376304.1|	-	0.017	15.4	19.3	0.2	12.0	4.8	3.1	1	1	2	3	3	3	0	Plant	protein	of	unknown	function	(DUF641)
ATG16	PF08614.11	gi|529077301|ref|YP_008376304.1|	-	0.03	14.5	30.4	0.14	12.3	17.9	2.4	1	1	1	2	2	2	0	Autophagy	protein	16	(ATG16)
DivIC	PF04977.15	gi|529077301|ref|YP_008376304.1|	-	0.034	13.9	0.8	0.034	13.9	0.8	4.1	1	1	3	4	4	4	0	Septum	formation	initiator
RPW8	PF05659.11	gi|529077301|ref|YP_008376304.1|	-	0.043	13.5	10.2	0.41	10.3	1.2	2.3	1	1	1	2	2	2	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
DUF211	PF02680.14	gi|529077301|ref|YP_008376304.1|	-	0.068	13.3	2.8	3.7	7.8	0.0	3.4	3	0	0	3	3	2	0	Uncharacterized	ArCR,	COG1888
LMBR1	PF04791.16	gi|529077301|ref|YP_008376304.1|	-	0.069	12.1	5.8	0.095	11.6	5.8	1.1	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
Fez1	PF06818.15	gi|529077301|ref|YP_008376304.1|	-	0.1	13.0	15.6	0.23	11.9	15.6	1.6	1	0	0	1	1	1	0	Fez1
DUF4251	PF14059.6	gi|529077301|ref|YP_008376304.1|	-	0.11	12.4	2.1	35	4.3	0.0	3.8	3	1	0	4	4	3	0	Domain	of	unknown	function	(DUF4251)
DUF2911	PF11138.8	gi|529077301|ref|YP_008376304.1|	-	0.12	12.3	0.9	19	5.1	0.0	3.1	3	1	0	3	3	2	0	Protein	of	unknown	function	(DUF2911)
MAP65_ASE1	PF03999.12	gi|529077301|ref|YP_008376304.1|	-	0.12	11.1	11.8	0.16	10.6	11.8	1.1	1	0	0	1	1	1	0	Microtubule	associated	protein	(MAP65/ASE1	family)
EzrA	PF06160.12	gi|529077301|ref|YP_008376304.1|	-	0.12	10.5	17.1	0.49	8.5	11.4	2.1	1	1	1	2	2	2	0	Septation	ring	formation	regulator,	EzrA
SlyX	PF04102.12	gi|529077301|ref|YP_008376304.1|	-	0.12	13.0	28.7	0.098	13.3	7.8	3.6	1	1	2	3	3	3	0	SlyX
ERM	PF00769.19	gi|529077301|ref|YP_008376304.1|	-	0.13	12.1	18.8	0.29	10.9	18.8	1.5	1	0	0	1	1	1	0	Ezrin/radixin/moesin	family
Taxilin	PF09728.9	gi|529077301|ref|YP_008376304.1|	-	0.13	11.4	16.1	0.18	11.0	16.1	1.1	1	0	0	1	1	1	0	Myosin-like	coiled-coil	protein
FliJ	PF02050.16	gi|529077301|ref|YP_008376304.1|	-	0.18	12.1	20.3	0.66	10.2	5.2	2.3	1	1	1	2	2	2	0	Flagellar	FliJ	protein
Gram_pos_anchor	PF00746.21	gi|529077301|ref|YP_008376304.1|	-	0.18	11.8	0.8	0.37	10.8	0.8	1.6	1	0	0	1	1	1	0	LPXTG	cell	wall	anchor	motif
DUF1825	PF08855.10	gi|529077301|ref|YP_008376304.1|	-	0.19	11.6	1.0	0.55	10.2	1.0	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1825)
DUF3584	PF12128.8	gi|529077301|ref|YP_008376304.1|	-	0.2	9.1	22.1	0.34	8.4	22.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
Filament	PF00038.21	gi|529077301|ref|YP_008376304.1|	-	0.26	10.8	25.2	0.17	11.4	22.0	2.1	2	1	0	2	2	1	0	Intermediate	filament	protein
DUF1465	PF07323.12	gi|529077301|ref|YP_008376304.1|	-	0.27	11.1	11.1	3.1	7.6	0.2	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1465)
MscS_porin	PF12795.7	gi|529077301|ref|YP_008376304.1|	-	0.27	10.8	43.2	3.1	7.3	27.6	3.0	1	1	0	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
NPCBM_assoc	PF10633.9	gi|529077301|ref|YP_008376304.1|	-	0.3	11.4	5.2	2.1	8.7	0.1	4.6	4	1	0	4	4	2	0	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
DUF4201	PF13870.6	gi|529077301|ref|YP_008376304.1|	-	0.34	10.6	13.9	2	8.1	13.1	2.1	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
Big_8	PF17961.1	gi|529077301|ref|YP_008376304.1|	-	0.36	11.0	0.1	0.36	11.0	0.1	4.2	4	0	0	4	4	3	0	Bacterial	Ig	domain
Myosin_tail_1	PF01576.19	gi|529077301|ref|YP_008376304.1|	-	0.37	8.5	21.0	0.55	8.0	21.0	1.1	1	0	0	1	1	1	0	Myosin	tail
DUF4200	PF13863.6	gi|529077301|ref|YP_008376304.1|	-	0.4	11.1	18.8	0.082	13.3	9.0	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4200)
DUF3450	PF11932.8	gi|529077301|ref|YP_008376304.1|	-	0.42	9.9	27.5	0.32	10.3	9.7	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3450)
ADIP	PF11559.8	gi|529077301|ref|YP_008376304.1|	-	0.45	10.6	27.7	0.39	10.8	7.2	2.9	1	1	1	3	3	3	0	Afadin-	and	alpha	-actinin-Binding
Fib_alpha	PF08702.10	gi|529077301|ref|YP_008376304.1|	-	0.47	10.6	20.1	1.2	9.4	9.1	2.3	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
HrpB7	PF09486.10	gi|529077301|ref|YP_008376304.1|	-	0.49	10.8	13.0	2.5	8.5	12.0	2.5	1	1	1	2	2	2	0	Bacterial	type	III	secretion	protein	(HrpB7)
RasGAP_C	PF03836.15	gi|529077301|ref|YP_008376304.1|	-	0.5	10.5	15.6	0.17	12.0	7.6	2.3	1	1	1	2	2	2	0	RasGAP	C-terminus
DUF4407	PF14362.6	gi|529077301|ref|YP_008376304.1|	-	0.59	9.4	21.5	8.4	5.6	21.5	2.1	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
BST2	PF16716.5	gi|529077301|ref|YP_008376304.1|	-	0.59	10.8	27.7	1.2	9.7	8.0	2.9	1	1	2	3	3	3	0	Bone	marrow	stromal	antigen	2
DUF745	PF05335.13	gi|529077301|ref|YP_008376304.1|	-	0.73	9.5	19.0	0.5	10.1	6.5	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF745)
Nup88	PF10168.9	gi|529077301|ref|YP_008376304.1|	-	0.78	7.5	12.6	1.1	7.0	12.6	1.1	1	0	0	1	1	1	0	Nuclear	pore	component
CENP-F_leu_zip	PF10473.9	gi|529077301|ref|YP_008376304.1|	-	0.8	9.7	28.9	1.1e+02	2.9	6.7	2.3	1	1	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
CEP63	PF17045.5	gi|529077301|ref|YP_008376304.1|	-	0.94	9.3	23.5	3.5	7.5	8.0	2.2	1	1	0	2	2	2	0	Centrosomal	protein	of	63	kDa
MPS2	PF17060.5	gi|529077301|ref|YP_008376304.1|	-	1.4	8.1	11.8	2	7.6	3.4	2.1	1	1	1	2	2	2	0	Monopolar	spindle	protein	2
HAP1_N	PF04849.13	gi|529077301|ref|YP_008376304.1|	-	1.4	8.0	22.7	2.4	7.3	22.7	1.2	1	0	0	1	1	1	0	HAP1	N-terminal	conserved	region
ExsD	PF16806.5	gi|529077301|ref|YP_008376304.1|	-	1.5	8.7	13.0	0.13	12.2	2.5	2.2	1	1	1	2	2	2	0	Antiactivator	protein	ExsD
YscO	PF07321.12	gi|529077301|ref|YP_008376304.1|	-	1.7	8.6	17.7	0.21	11.6	8.6	2.4	1	1	1	2	2	2	0	Type	III	secretion	protein	YscO
V_ATPase_I	PF01496.19	gi|529077301|ref|YP_008376304.1|	-	1.7	6.4	9.3	3	5.6	9.3	1.3	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
HOOK	PF05622.12	gi|529077301|ref|YP_008376304.1|	-	1.9	6.5	26.5	3.1	5.8	7.0	2.0	1	1	1	2	2	2	0	HOOK	protein
DUF1043	PF06295.12	gi|529077301|ref|YP_008376304.1|	-	2	8.4	15.4	32	4.6	15.4	2.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1043)
zf-C4H2	PF10146.9	gi|529077301|ref|YP_008376304.1|	-	2.1	8.6	11.2	3.7	7.8	11.2	1.3	1	0	0	1	1	1	0	Zinc	finger-containing	protein
DUF3552	PF12072.8	gi|529077301|ref|YP_008376304.1|	-	2.2	7.7	26.2	3	7.2	8.3	2.9	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF3552)
TPR_MLP1_2	PF07926.12	gi|529077301|ref|YP_008376304.1|	-	2.2	8.4	28.3	16	5.6	15.7	2.7	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
IFT57	PF10498.9	gi|529077301|ref|YP_008376304.1|	-	2.3	7.1	20.0	2.8	6.8	16.8	2.1	1	1	1	2	2	2	0	Intra-flagellar	transport	protein	57
XLF	PF09302.11	gi|529077301|ref|YP_008376304.1|	-	2.3	8.3	14.5	5.9	7.0	14.5	1.6	1	0	0	1	1	1	0	XLF-Cernunnos,	XRcc4-like	factor,	NHEJ	component
Cep57_MT_bd	PF06657.13	gi|529077301|ref|YP_008376304.1|	-	2.4	8.7	12.2	8	7.0	3.8	2.6	1	1	1	2	2	2	0	Centrosome	microtubule-binding	domain	of	Cep57
DUF812	PF05667.11	gi|529077301|ref|YP_008376304.1|	-	2.4	7.0	24.1	4.7	6.0	24.1	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
Cortex-I_coil	PF09304.10	gi|529077301|ref|YP_008376304.1|	-	2.5	8.3	19.8	6.4	7.0	9.4	2.5	1	1	1	2	2	2	0	Cortexillin	I,	coiled	coil
HlyD_2	PF12700.7	gi|529077301|ref|YP_008376304.1|	-	2.6	6.7	12.9	0.42	9.3	8.0	1.8	1	1	1	2	2	2	0	HlyD	family	secretion	protein
Seryl_tRNA_N	PF02403.22	gi|529077301|ref|YP_008376304.1|	-	2.7	8.3	16.9	0.66	10.2	5.1	2.9	1	1	2	3	3	3	0	Seryl-tRNA	synthetase	N-terminal	domain
Syntaxin-6_N	PF09177.11	gi|529077301|ref|YP_008376304.1|	-	3.3	8.3	18.7	3.8	8.1	4.5	2.6	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
Golgin_A5	PF09787.9	gi|529077301|ref|YP_008376304.1|	-	3.3	7.1	27.0	43	3.4	26.2	1.8	1	1	1	2	2	2	0	Golgin	subfamily	A	member	5
DUF948	PF06103.11	gi|529077301|ref|YP_008376304.1|	-	3.8	7.8	16.6	0.82	10.0	4.4	3.2	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
MAD	PF05557.13	gi|529077301|ref|YP_008376304.1|	-	4	5.7	23.7	12	4.1	23.7	1.6	1	1	0	1	1	1	0	Mitotic	checkpoint	protein
OmpH	PF03938.14	gi|529077301|ref|YP_008376304.1|	-	4.1	7.7	24.5	6.2	7.1	9.2	2.3	1	1	1	2	2	2	0	Outer	membrane	protein	(OmpH-like)
Laminin_II	PF06009.12	gi|529077301|ref|YP_008376304.1|	-	4.1	7.4	18.5	2.3	8.2	11.1	2.5	1	1	1	2	2	2	0	Laminin	Domain	II
TMPIT	PF07851.13	gi|529077301|ref|YP_008376304.1|	-	4.4	6.5	17.1	2.5	7.3	5.4	2.1	1	1	1	2	2	2	0	TMPIT-like	protein
bZIP_1	PF00170.21	gi|529077301|ref|YP_008376304.1|	-	4.7	7.4	18.9	0.71	10.0	1.2	3.4	3	1	0	3	3	3	0	bZIP	transcription	factor
KxDL	PF10241.9	gi|529077301|ref|YP_008376304.1|	-	5	7.5	16.5	9.6	6.6	3.0	3.1	1	1	2	3	3	3	0	Uncharacterized	conserved	protein
DUF4763	PF15960.5	gi|529077301|ref|YP_008376304.1|	-	5.3	6.3	21.7	7.4	5.8	11.2	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4763)
Cnn_1N	PF07989.11	gi|529077301|ref|YP_008376304.1|	-	5.5	7.2	13.8	9.4	6.5	3.8	3.2	1	1	1	2	2	1	0	Centrosomin	N-terminal	motif	1
CREPT	PF16566.5	gi|529077301|ref|YP_008376304.1|	-	5.8	7.1	16.4	1.6	8.9	5.2	2.2	1	1	1	2	2	2	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
TMF_TATA_bd	PF12325.8	gi|529077301|ref|YP_008376304.1|	-	6.8	6.9	25.8	2.3	8.5	8.8	2.5	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
HR1	PF02185.16	gi|529077301|ref|YP_008376304.1|	-	8.3	6.6	22.0	4	7.6	4.1	3.6	2	1	1	3	3	3	0	Hr1	repeat
DUF4795	PF16043.5	gi|529077301|ref|YP_008376304.1|	-	9.2	5.8	25.3	6.1	6.4	14.9	2.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4795)
CC2-LZ	PF16516.5	gi|529077301|ref|YP_008376304.1|	-	9.3	6.7	21.0	0.56	10.6	0.9	3.5	1	1	2	3	3	3	0	Leucine	zipper	of	domain	CC2	of	NEMO,	NF-kappa-B	essential	modulator
ALMT	PF11744.8	gi|529077301|ref|YP_008376304.1|	-	9.9	4.9	8.3	15	4.3	8.3	1.1	1	0	0	1	1	1	0	Aluminium	activated	malate	transporter
CENP-H	PF05837.12	gi|529077301|ref|YP_008376304.1|	-	10	6.6	24.3	0.17	12.3	7.7	2.3	1	1	1	2	2	2	0	Centromere	protein	H	(CENP-H)
CheF-arch	PF04283.12	gi|529077302|ref|YP_008376305.1|	-	6.2e-59	199.4	1.3	6.2e-59	199.4	1.3	1.9	2	0	0	2	2	2	1	Chemotaxis	signal	transduction	system	protein	F	from	archaea
NTP_transferase	PF00483.23	gi|529077303|ref|YP_008376306.1|	-	2e-37	129.1	0.0	2.4e-37	128.9	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|529077303|ref|YP_008376306.1|	-	4.5e-21	75.9	1.3	4.9e-20	72.5	0.2	2.3	2	0	0	2	2	2	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|529077303|ref|YP_008376306.1|	-	2.8e-16	58.5	7.9	4.3e-09	35.7	2.1	5.1	2	1	2	4	4	4	4	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|529077303|ref|YP_008376306.1|	-	4.2e-09	36.0	5.7	2.9e-05	23.7	1.4	3.9	3	1	0	3	3	3	2	Hexapeptide	repeat	of	succinyl-transferase
IspD	PF01128.19	gi|529077303|ref|YP_008376306.1|	-	0.0026	17.6	0.0	0.0047	16.7	0.0	1.4	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
SIS	PF01380.22	gi|529077304|ref|YP_008376307.1|	-	1.2e-54	183.7	0.3	4.5e-26	91.2	0.1	2.2	2	0	0	2	2	2	2	SIS	domain
GATase_6	PF13522.6	gi|529077304|ref|YP_008376307.1|	-	4.5e-20	72.2	0.1	1.1e-19	71.0	0.1	1.6	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|529077304|ref|YP_008376307.1|	-	8e-18	64.5	0.0	1.4e-17	63.7	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
SIS_2	PF13580.6	gi|529077304|ref|YP_008376307.1|	-	0.025	14.6	0.2	0.21	11.6	0.0	2.3	2	0	0	2	2	2	0	SIS	domain
DUF4154	PF13689.6	gi|529077304|ref|YP_008376307.1|	-	0.099	12.9	0.0	0.42	10.8	0.0	1.9	2	0	0	2	2	2	0	YfiR/HmsC-like
GATase_4	PF13230.6	gi|529077304|ref|YP_008376307.1|	-	0.18	10.6	0.0	0.37	9.7	0.0	1.4	1	0	0	1	1	1	0	Glutamine	amidotransferases	class-II
DUF4330	PF14221.6	gi|529077305|ref|YP_008376308.1|	-	2.2e-28	99.6	27.5	1e-13	51.9	0.4	8.0	6	2	1	7	7	7	5	Domain	of	unknown	function	(DUF4330)
CDC48_2	PF02933.17	gi|529077305|ref|YP_008376308.1|	-	0.031	14.1	3.4	0.39	10.5	0.0	4.0	4	0	0	4	4	4	0	Cell	division	protein	48	(CDC48),	domain	2
CbeA_antitoxin	PF06154.11	gi|529077305|ref|YP_008376308.1|	-	0.036	14.7	0.1	2	9.0	0.0	3.4	4	0	0	4	4	4	0	CbeA_antitoxin,	type	IV,	cytoskeleton	bundling-enhancing	factor	A
ssDNA_TraI_N	PF18272.1	gi|529077306|ref|YP_008376309.1|	-	0.1	12.6	0.0	0.28	11.2	0.0	1.7	1	0	0	1	1	1	0	single-stranded	DNA	binding	TraI	N-terminal	subdomain
Bac_transf	PF02397.16	gi|529077307|ref|YP_008376310.1|	-	4.8e-62	208.8	0.0	8.6e-62	208.0	0.0	1.4	1	0	0	1	1	1	1	Bacterial	sugar	transferase
DUF1970	PF09301.10	gi|529077307|ref|YP_008376310.1|	-	3.5e-09	36.9	0.0	6.4e-09	36.1	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1970)
Epimerase	PF01370.21	gi|529077308|ref|YP_008376311.1|	-	2.2e-63	214.0	0.0	2.7e-63	213.7	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|529077308|ref|YP_008376311.1|	-	7.6e-60	203.0	0.0	1.1e-59	202.5	0.0	1.2	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|529077308|ref|YP_008376311.1|	-	8.7e-25	87.3	0.0	1.2e-24	86.8	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|529077308|ref|YP_008376311.1|	-	1e-17	64.3	0.0	1e-16	61.0	0.0	2.3	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
RmlD_sub_bind	PF04321.17	gi|529077308|ref|YP_008376311.1|	-	3e-17	62.7	0.2	3.6e-17	62.4	0.2	1.0	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.12	gi|529077308|ref|YP_008376311.1|	-	2.2e-11	43.5	0.0	7e-08	31.9	0.0	2.6	2	1	1	3	3	3	2	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|529077308|ref|YP_008376311.1|	-	3.8e-09	36.7	0.2	1.1e-08	35.1	0.0	1.8	2	1	1	3	3	3	1	NAD(P)H-binding
NmrA	PF05368.13	gi|529077308|ref|YP_008376311.1|	-	0.00011	21.8	1.5	0.00012	21.8	0.3	1.6	2	0	0	2	2	2	1	NmrA-like	family
adh_short	PF00106.25	gi|529077308|ref|YP_008376311.1|	-	0.0002	20.9	0.2	0.00061	19.3	0.0	1.8	2	0	0	2	2	2	1	short	chain	dehydrogenase
TrkA_N	PF02254.18	gi|529077308|ref|YP_008376311.1|	-	0.0021	18.3	0.6	0.0065	16.7	0.2	2.0	2	0	0	2	2	2	1	TrkA-N	domain
adh_short_C2	PF13561.6	gi|529077308|ref|YP_008376311.1|	-	0.019	14.5	0.2	0.22	11.0	0.0	2.2	2	0	0	2	2	2	0	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|529077308|ref|YP_008376311.1|	-	0.024	14.5	1.4	0.22	11.4	0.3	2.6	2	1	0	2	2	2	0	KR	domain
eIF-6	PF01912.18	gi|529077309|ref|YP_008376312.1|	-	2.6e-72	242.4	0.1	3.1e-72	242.1	0.1	1.1	1	0	0	1	1	1	1	eIF-6	family
DUF1707	PF08044.11	gi|529077309|ref|YP_008376312.1|	-	0.27	11.3	3.8	3.8	7.7	0.2	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1707)
Ribosomal_L31e	PF01198.19	gi|529077310|ref|YP_008376313.1|	-	6.2e-10	39.2	0.0	7.3e-10	38.9	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L31e
Ribosomal_L39	PF00832.20	gi|529077311|ref|YP_008376314.1|	-	1.1e-20	73.0	8.1	1.3e-20	72.7	8.1	1.1	1	0	0	1	1	1	1	Ribosomal	L39	protein
Zip	PF02535.22	gi|529077312|ref|YP_008376315.1|	-	1.5e-14	54.0	18.5	2.3e-13	50.1	2.1	3.2	2	1	0	3	3	3	2	ZIP	Zinc	transporter
DUF3042	PF11240.8	gi|529077312|ref|YP_008376315.1|	-	3.2	7.8	9.4	3.9	7.6	0.2	4.2	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF3042)
LigT_PEase	PF02834.16	gi|529077313|ref|YP_008376316.1|	-	4.8e-21	74.7	0.0	8.4e-14	51.5	0.0	2.1	2	0	0	2	2	2	2	LigT	like	Phosphoesterase
2_5_RNA_ligase2	PF13563.6	gi|529077313|ref|YP_008376316.1|	-	1.8e-15	57.1	0.0	2.3e-15	56.8	0.0	1.1	1	0	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
AKAP7_NLS	PF10469.9	gi|529077313|ref|YP_008376316.1|	-	3.3e-06	27.1	0.0	4.2e-06	26.8	0.0	1.2	1	0	0	1	1	1	1	AKAP7	2'5'	RNA	ligase-like	domain
Polbeta	PF18765.1	gi|529077314|ref|YP_008376317.1|	-	8.8e-14	51.4	0.0	1.2e-13	50.9	0.0	1.2	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
NTP_transf_2	PF01909.23	gi|529077314|ref|YP_008376317.1|	-	1.3e-07	31.8	0.0	1.8e-07	31.3	0.0	1.3	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
RecA_dep_nuc	PF16786.5	gi|529077314|ref|YP_008376317.1|	-	0.079	13.1	0.0	0.12	12.5	0.0	1.3	1	0	0	1	1	1	0	Recombination	enhancement,	RecA-dependent	nuclease
TPR_1	PF00515.28	gi|529077315|ref|YP_008376318.1|	-	5.2e-23	79.9	6.5	4.7e-07	29.3	0.2	4.7	5	0	0	5	5	5	3	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|529077315|ref|YP_008376318.1|	-	1e-20	72.1	16.4	4.9e-05	23.1	0.5	5.2	5	0	0	5	5	5	4	Tetratricopeptide	repeat
TPR_16	PF13432.6	gi|529077315|ref|YP_008376318.1|	-	3.5e-20	72.4	19.4	3.7e-11	43.5	2.2	3.2	2	1	1	3	3	3	3	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|529077315|ref|YP_008376318.1|	-	4.1e-19	67.1	3.7	0.00036	20.5	0.2	5.2	5	0	0	5	5	5	3	Tetratricopeptide	repeat
TPR_12	PF13424.6	gi|529077315|ref|YP_008376318.1|	-	1.1e-14	54.4	20.4	1.5e-08	34.8	5.0	3.5	2	2	2	4	4	4	4	Tetratricopeptide	repeat
TPR_11	PF13414.6	gi|529077315|ref|YP_008376318.1|	-	3.8e-14	52.1	10.1	6.9e-06	25.6	0.0	4.5	3	1	2	5	5	4	3	TPR	repeat
TPR_14	PF13428.6	gi|529077315|ref|YP_008376318.1|	-	1e-13	50.8	22.1	3e-05	24.5	0.4	5.2	1	1	4	5	5	5	4	Tetratricopeptide	repeat
TPR_9	PF13371.6	gi|529077315|ref|YP_008376318.1|	-	1e-11	44.8	12.5	3.5e-06	27.1	1.0	3.4	1	1	2	3	3	3	3	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|529077315|ref|YP_008376318.1|	-	5.9e-10	39.5	2.0	2.7e-05	24.6	0.4	4.0	2	1	2	4	4	4	3	Tetratricopeptide	repeat
TPR_17	PF13431.6	gi|529077315|ref|YP_008376318.1|	-	7.7e-10	38.5	1.2	0.00011	22.3	0.0	4.2	4	0	0	4	4	4	2	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|529077315|ref|YP_008376318.1|	-	9.3e-09	34.7	13.4	0.077	13.1	0.3	4.8	5	0	0	5	5	5	4	Tetratricopeptide	repeat
TPR_6	PF13174.6	gi|529077315|ref|YP_008376318.1|	-	3.6e-06	27.2	10.3	0.33	11.7	0.1	4.7	5	0	0	5	5	4	3	Tetratricopeptide	repeat
TPR_10	PF13374.6	gi|529077315|ref|YP_008376318.1|	-	0.0008	19.2	25.8	0.0045	16.8	0.5	4.9	5	0	0	5	5	5	3	Tetratricopeptide	repeat
TPR_4	PF07721.14	gi|529077315|ref|YP_008376318.1|	-	0.00096	19.6	1.2	0.00096	19.6	1.2	5.2	5	0	0	5	5	5	1	Tetratricopeptide	repeat
YfiO	PF13525.6	gi|529077315|ref|YP_008376318.1|	-	0.0018	18.0	0.5	0.0042	16.8	0.4	1.5	1	1	0	1	1	1	1	Outer	membrane	lipoprotein
DUF4192	PF13830.6	gi|529077315|ref|YP_008376318.1|	-	0.0022	18.1	4.3	0.0022	18.1	4.3	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4192)
ANAPC3	PF12895.7	gi|529077315|ref|YP_008376318.1|	-	0.0027	17.9	1.4	0.012	15.8	0.1	2.5	2	1	1	3	3	3	1	Anaphase-promoting	complex,	cyclosome,	subunit	3
Fis1_TPR_C	PF14853.6	gi|529077315|ref|YP_008376318.1|	-	0.0082	16.2	0.3	15	5.7	0.0	3.4	3	0	0	3	3	3	0	Fis1	C-terminal	tetratricopeptide	repeat
ANAPC5	PF12862.7	gi|529077315|ref|YP_008376318.1|	-	0.041	13.9	9.2	1.7	8.8	1.3	3.9	1	1	2	3	3	3	0	Anaphase-promoting	complex	subunit	5
PPTA	PF01239.22	gi|529077315|ref|YP_008376318.1|	-	0.12	12.2	0.0	1.6	8.6	0.0	2.3	2	0	0	2	2	2	0	Protein	prenyltransferase	alpha	subunit	repeat
RPN7	PF10602.9	gi|529077315|ref|YP_008376318.1|	-	0.14	11.8	1.7	3	7.5	0.2	2.9	2	1	1	3	3	3	0	26S	proteasome	subunit	RPN7
CAF1	PF04857.20	gi|529077315|ref|YP_008376318.1|	-	0.14	11.3	0.5	0.19	10.8	0.5	1.1	1	0	0	1	1	1	0	CAF1	family	ribonuclease
DUF1955	PF09205.10	gi|529077315|ref|YP_008376318.1|	-	0.16	11.7	0.5	2.7	7.7	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1955)
Acetyltransf_11	PF13720.6	gi|529077315|ref|YP_008376318.1|	-	0.7	10.4	2.7	0.75	10.3	0.5	2.1	2	0	0	2	2	2	0	Udp	N-acetylglucosamine	O-acyltransferase;	Domain	2
VitK2_biosynth	PF02621.14	gi|529077315|ref|YP_008376318.1|	-	2.3	7.7	7.2	2.8	7.4	2.0	2.1	2	0	0	2	2	2	0	Menaquinone	biosynthesis
DUF424	PF04242.13	gi|529077316|ref|YP_008376319.1|	-	5.4e-29	100.3	0.0	6.1e-29	100.1	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF424)
Lipase_GDSL_3	PF14606.6	gi|529077317|ref|YP_008376320.1|	-	1e-23	84.4	0.0	1.4e-23	83.9	0.0	1.1	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
Lipase_GDSL_2	PF13472.6	gi|529077317|ref|YP_008376320.1|	-	4.5e-12	46.7	0.2	8.1e-12	45.9	0.2	1.4	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
GxDLY	PF14607.6	gi|529077317|ref|YP_008376320.1|	-	0.0084	15.9	0.0	0.014	15.2	0.0	1.3	1	0	0	1	1	1	1	N-terminus	of	Esterase_SGNH_hydro-type
B12-binding	PF02310.19	gi|529077317|ref|YP_008376320.1|	-	0.057	13.5	0.1	0.099	12.7	0.1	1.4	1	0	0	1	1	1	0	B12	binding	domain
TrmB	PF01978.19	gi|529077319|ref|YP_008376322.1|	-	4.2e-07	29.8	0.1	1.1e-06	28.4	0.0	1.7	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|529077319|ref|YP_008376322.1|	-	0.00032	20.7	0.0	0.00088	19.3	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|529077319|ref|YP_008376322.1|	-	0.00065	20.1	0.0	0.0012	19.3	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.10	gi|529077319|ref|YP_008376322.1|	-	0.0012	18.6	0.0	0.0027	17.5	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|529077319|ref|YP_008376322.1|	-	0.0015	18.4	0.0	0.005	16.7	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.6	gi|529077319|ref|YP_008376322.1|	-	0.011	15.3	0.0	0.081	12.5	0.0	2.4	3	0	0	3	3	3	0	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|529077319|ref|YP_008376322.1|	-	0.029	14.2	0.0	0.054	13.4	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DUF2250	PF10007.9	gi|529077319|ref|YP_008376322.1|	-	0.058	13.5	0.0	0.15	12.2	0.0	1.6	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
MarR	PF01047.22	gi|529077319|ref|YP_008376322.1|	-	0.075	13.0	0.0	0.14	12.1	0.0	1.4	1	0	0	1	1	1	0	MarR	family
PadR	PF03551.14	gi|529077319|ref|YP_008376322.1|	-	0.087	12.8	0.0	0.16	11.9	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Peptidase_M48	PF01435.18	gi|529077320|ref|YP_008376323.1|	-	7.1e-44	149.9	0.0	2.1e-43	148.4	0.0	1.6	1	1	1	2	2	2	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|529077320|ref|YP_008376323.1|	-	6.6e-09	35.4	0.1	2.7e-07	30.1	0.0	2.1	2	0	0	2	2	2	2	BlaR1	peptidase	M56
SprT-like	PF10263.9	gi|529077320|ref|YP_008376323.1|	-	0.088	12.7	0.0	0.12	12.2	0.0	1.2	1	0	0	1	1	1	0	SprT-like	family
NMD3	PF04981.13	gi|529077321|ref|YP_008376324.1|	-	8.8e-64	215.3	0.0	1.1e-63	215.0	0.0	1.1	1	0	0	1	1	1	1	NMD3	family
Rpr2	PF04032.16	gi|529077321|ref|YP_008376324.1|	-	0.0026	18.0	0.1	0.16	12.3	0.0	2.6	3	0	0	3	3	2	1	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
DZR	PF12773.7	gi|529077321|ref|YP_008376324.1|	-	0.0096	15.9	4.5	0.42	10.7	2.9	3.1	2	1	0	2	2	2	1	Double	zinc	ribbon
zf-NADH-PPase	PF09297.11	gi|529077321|ref|YP_008376324.1|	-	0.033	13.8	0.4	0.033	13.8	0.4	2.8	3	0	0	3	3	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
FYVE	PF01363.21	gi|529077321|ref|YP_008376324.1|	-	0.049	13.8	2.3	2.6	8.3	1.8	2.5	2	1	0	2	2	2	0	FYVE	zinc	finger
GFA	PF04828.14	gi|529077321|ref|YP_008376324.1|	-	0.11	12.8	1.9	23	5.4	0.0	3.2	3	0	0	3	3	3	0	Glutathione-dependent	formaldehyde-activating	enzyme
Nudix_N_2	PF14803.6	gi|529077321|ref|YP_008376324.1|	-	0.97	9.4	16.6	3.1	7.8	0.1	4.2	5	0	0	5	5	5	0	Nudix	N-terminal
eIF-5_eIF-2B	PF01873.17	gi|529077321|ref|YP_008376324.1|	-	1.3	8.9	3.0	0.46	10.4	0.3	1.6	2	0	0	2	2	2	0	Domain	found	in	IF2B/IF5
zinc_ribbon_2	PF13240.6	gi|529077321|ref|YP_008376324.1|	-	1.7	8.5	10.9	1.2	8.9	0.1	3.5	4	0	0	4	4	4	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|529077321|ref|YP_008376324.1|	-	3.6	7.1	12.6	1.5	8.3	0.3	3.6	4	0	0	4	4	4	0	zinc-ribbon	domain
zf_C2H2_13	PF18508.1	gi|529077321|ref|YP_008376324.1|	-	4.6	6.9	6.4	5.7	6.6	0.0	2.9	3	0	0	3	3	3	0	Zinc	finger	domain
Met_10	PF02475.16	gi|529077322|ref|YP_008376325.1|	-	2.1e-55	187.6	0.0	3.1e-55	187.0	0.0	1.2	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_15	PF09445.10	gi|529077322|ref|YP_008376325.1|	-	4e-07	29.8	0.0	5.9e-07	29.2	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_25	PF13649.6	gi|529077322|ref|YP_008376325.1|	-	2.3e-05	25.0	0.0	6.7e-05	23.5	0.0	1.8	1	0	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|529077322|ref|YP_008376325.1|	-	0.0001	22.0	0.0	0.00018	21.2	0.0	1.4	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
MTS	PF05175.14	gi|529077322|ref|YP_008376325.1|	-	0.0001	21.9	0.0	0.00024	20.7	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_31	PF13847.6	gi|529077322|ref|YP_008376325.1|	-	0.0014	18.5	0.0	0.0022	17.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_24	PF13578.6	gi|529077322|ref|YP_008376325.1|	-	0.0017	19.4	0.1	0.0081	17.2	0.0	2.2	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|529077322|ref|YP_008376325.1|	-	0.002	18.0	0.0	0.014	15.2	0.0	2.2	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|529077322|ref|YP_008376325.1|	-	0.0053	17.4	0.0	0.014	16.1	0.0	1.8	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.13	gi|529077322|ref|YP_008376325.1|	-	0.014	14.8	0.0	0.022	14.1	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
SAM_MT	PF04445.13	gi|529077322|ref|YP_008376325.1|	-	0.02	14.3	0.0	0.036	13.5	0.0	1.3	1	0	0	1	1	1	0	Putative	SAM-dependent	methyltransferase
RrnaAD	PF00398.20	gi|529077322|ref|YP_008376325.1|	-	0.032	13.3	0.0	0.048	12.7	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
TRM	PF02005.16	gi|529077322|ref|YP_008376325.1|	-	0.032	13.4	0.0	0.04	13.1	0.0	1.1	1	0	0	1	1	1	0	N2,N2-dimethylguanosine	tRNA	methyltransferase
tRNA_U5-meth_tr	PF05958.11	gi|529077322|ref|YP_008376325.1|	-	0.046	12.7	0.0	0.069	12.1	0.0	1.1	1	0	0	1	1	1	0	tRNA	(Uracil-5-)-methyltransferase
DNA_methylase	PF00145.17	gi|529077322|ref|YP_008376325.1|	-	0.054	12.8	0.0	0.084	12.2	0.0	1.2	1	0	0	1	1	1	0	C-5	cytosine-specific	DNA	methylase
Methyltr_RsmB-F	PF01189.17	gi|529077322|ref|YP_008376325.1|	-	0.084	12.5	0.1	0.35	10.5	0.0	1.9	2	0	0	2	2	2	0	16S	rRNA	methyltransferase	RsmB/F
PRMT5	PF05185.16	gi|529077322|ref|YP_008376325.1|	-	0.22	11.4	0.0	0.36	10.7	0.0	1.3	1	0	0	1	1	1	0	PRMT5	arginine-N-methyltransferase
PNP_UDP_1	PF01048.20	gi|529077324|ref|YP_008376327.1|	-	3.8e-45	154.0	2.0	4.6e-45	153.7	2.0	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
Helicase_C_2	PF13307.6	gi|529077325|ref|YP_008376328.1|	-	1e-19	71.3	0.0	1.6e-19	70.8	0.0	1.3	1	0	0	1	1	1	1	Helicase	C-terminal	domain
ResIII	PF04851.15	gi|529077325|ref|YP_008376328.1|	-	3.1e-05	24.0	0.0	0.012	15.6	0.0	2.2	2	0	0	2	2	2	2	Type	III	restriction	enzyme,	res	subunit
DEAD_2	PF06733.15	gi|529077325|ref|YP_008376328.1|	-	0.00014	21.6	0.0	0.00021	21.0	0.0	1.2	1	0	0	1	1	1	1	DEAD_2
AAA_30	PF13604.6	gi|529077325|ref|YP_008376328.1|	-	0.00027	20.7	0.7	0.26	11.0	0.1	2.3	2	0	0	2	2	2	2	AAA	domain
DEAD	PF00270.29	gi|529077325|ref|YP_008376328.1|	-	0.0017	18.1	0.0	0.28	10.9	0.0	2.3	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
AAA_22	PF13401.6	gi|529077325|ref|YP_008376328.1|	-	0.0046	17.2	0.0	0.033	14.5	0.0	2.3	2	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|529077325|ref|YP_008376328.1|	-	0.0052	17.2	0.1	0.024	15.0	0.0	2.2	2	0	0	2	2	2	1	AAA	ATPase	domain
DXP_redisom_C	PF08436.12	gi|529077325|ref|YP_008376328.1|	-	0.024	14.8	0.0	0.05	13.7	0.0	1.5	1	0	0	1	1	1	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase	C-terminal	domain
PhoH	PF02562.16	gi|529077325|ref|YP_008376328.1|	-	0.057	12.9	0.0	0.12	11.9	0.0	1.5	1	0	0	1	1	1	0	PhoH-like	protein
TsaE	PF02367.17	gi|529077325|ref|YP_008376328.1|	-	0.18	11.8	0.0	4.2	7.4	0.0	2.3	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
CxxCxxCC	PF03692.15	gi|529077326|ref|YP_008376329.1|	-	1e-05	26.1	3.7	0.00014	22.4	3.7	2.2	1	1	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
adh_short_C2	PF13561.6	gi|529077328|ref|YP_008376331.1|	-	8.8e-68	228.3	3.1	1e-67	228.1	3.1	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|529077328|ref|YP_008376331.1|	-	4.3e-56	189.5	1.0	5.6e-56	189.1	1.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|529077328|ref|YP_008376331.1|	-	2.1e-20	73.4	0.4	2.7e-20	73.0	0.4	1.1	1	0	0	1	1	1	1	KR	domain
3HCDH_N	PF02737.18	gi|529077328|ref|YP_008376331.1|	-	0.031	14.1	0.8	0.12	12.2	0.3	1.9	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Epimerase	PF01370.21	gi|529077328|ref|YP_008376331.1|	-	0.039	13.4	0.1	0.076	12.5	0.1	1.5	2	0	0	2	2	2	0	NAD	dependent	epimerase/dehydratase	family
PucR	PF07905.11	gi|529077328|ref|YP_008376331.1|	-	0.13	12.5	0.1	1.4	9.2	0.1	2.2	2	0	0	2	2	2	0	Purine	catabolism	regulatory	protein-like	family
MutS_V	PF00488.21	gi|529077329|ref|YP_008376332.1|	-	1.9e-08	34.6	0.1	3.5e-08	33.7	0.1	1.4	1	0	0	1	1	1	1	MutS	domain	V
HHH_5	PF14520.6	gi|529077329|ref|YP_008376332.1|	-	3.4e-07	30.8	1.1	3.4e-07	30.8	1.1	2.7	3	0	0	3	3	3	1	Helix-hairpin-helix	domain
HHH	PF00633.23	gi|529077329|ref|YP_008376332.1|	-	0.00053	19.7	1.5	0.0027	17.5	0.1	2.9	3	0	0	3	3	3	1	Helix-hairpin-helix	motif
IMS_HHH	PF11798.8	gi|529077329|ref|YP_008376332.1|	-	0.055	13.8	0.0	0.32	11.4	0.0	2.3	2	0	0	2	2	2	0	IMS	family	HHH	motif
AAA_29	PF13555.6	gi|529077329|ref|YP_008376332.1|	-	0.13	12.0	0.0	0.3	10.9	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
DUF2892	PF11127.8	gi|529077331|ref|YP_008376334.1|	-	9.4e-15	54.4	6.1	1.9e-14	53.5	6.1	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2892)
YtpI	PF14007.6	gi|529077331|ref|YP_008376334.1|	-	0.0042	17.2	2.1	0.0049	17.0	2.1	1.1	1	0	0	1	1	1	1	YtpI-like	protein
DUF202	PF02656.15	gi|529077331|ref|YP_008376334.1|	-	0.068	13.6	6.9	0.095	13.2	6.9	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
YiaAB	PF05360.14	gi|529077331|ref|YP_008376334.1|	-	0.6	10.4	6.3	1.1	9.6	0.6	2.2	2	0	0	2	2	2	0	yiaA/B	two	helix	domain
DUF2530	PF10745.9	gi|529077331|ref|YP_008376334.1|	-	5.7	7.3	9.4	3.8	7.8	1.2	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2530)
PAS_4	PF08448.10	gi|529077332|ref|YP_008376335.1|	-	8.6e-45	151.5	11.7	1.4e-18	67.2	0.1	4.0	4	0	0	4	4	4	3	PAS	fold
PAS_9	PF13426.7	gi|529077332|ref|YP_008376335.1|	-	3e-34	117.4	0.0	1.4e-12	47.7	0.0	3.4	3	0	0	3	3	3	3	PAS	domain
PAS	PF00989.25	gi|529077332|ref|YP_008376335.1|	-	4.3e-27	94.4	0.2	4.7e-09	36.3	0.0	3.7	3	1	0	3	3	3	3	PAS	fold
HATPase_c	PF02518.26	gi|529077332|ref|YP_008376335.1|	-	7.3e-20	71.5	0.2	1.4e-18	67.4	0.0	2.3	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_8	PF13188.7	gi|529077332|ref|YP_008376335.1|	-	6.9e-17	61.1	0.9	1.2e-06	28.4	0.1	3.8	3	0	0	3	3	3	3	PAS	domain
PAS_3	PF08447.12	gi|529077332|ref|YP_008376335.1|	-	2.2e-15	56.7	0.2	6.4e-07	29.6	0.0	3.8	4	0	0	4	4	4	3	PAS	fold
HisKA	PF00512.25	gi|529077332|ref|YP_008376335.1|	-	5.1e-09	36.0	1.4	4.4e-08	33.1	0.5	2.9	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_7	PF12860.7	gi|529077332|ref|YP_008376335.1|	-	0.0036	17.4	4.5	0.89	9.7	0.0	4.8	5	2	0	5	5	5	1	PAS	fold
HATPase_c_2	PF13581.6	gi|529077332|ref|YP_008376335.1|	-	0.0082	16.1	0.1	0.023	14.7	0.1	1.8	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_10	PF13596.6	gi|529077332|ref|YP_008376335.1|	-	0.02	15.5	0.0	0.078	13.6	0.0	2.1	1	0	0	1	1	1	0	PAS	domain
DUF4349	PF14257.6	gi|529077332|ref|YP_008376335.1|	-	0.042	13.3	3.3	0.093	12.2	0.3	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4349)
HATPase_c_5	PF14501.6	gi|529077332|ref|YP_008376335.1|	-	0.12	12.3	0.0	1.7	8.6	0.0	2.2	1	1	0	1	1	1	0	GHKL	domain
Bac_luciferase	PF00296.20	gi|529077333|ref|YP_008376336.1|	-	5.2e-33	114.8	6.5	6.5e-33	114.5	6.5	1.1	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
tRNA_Me_trans	PF03054.16	gi|529077334|ref|YP_008376337.1|	-	1.2e-09	37.4	0.1	6.8e-06	25.1	0.1	2.4	2	0	0	2	2	2	2	tRNA	methyl	transferase
Asn_synthase	PF00733.21	gi|529077334|ref|YP_008376337.1|	-	3.8e-09	36.7	0.3	5.9e-09	36.1	0.3	1.3	1	0	0	1	1	1	1	Asparagine	synthase
NAD_synthase	PF02540.17	gi|529077334|ref|YP_008376337.1|	-	3.3e-08	32.9	0.0	6e-08	32.1	0.0	1.4	1	0	0	1	1	1	1	NAD	synthase
QueC	PF06508.13	gi|529077334|ref|YP_008376337.1|	-	4.1e-06	26.4	0.0	2.3e-05	24.0	0.0	2.1	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
ATP_bind_3	PF01171.20	gi|529077334|ref|YP_008376337.1|	-	0.00083	19.2	0.2	0.0061	16.3	0.1	2.2	1	1	1	2	2	2	1	PP-loop	family
QueH	PF02677.14	gi|529077334|ref|YP_008376337.1|	-	0.0021	18.2	0.3	0.0062	16.7	0.1	1.8	2	0	0	2	2	2	1	Epoxyqueuosine	reductase	QueH
Arginosuc_synth	PF00764.19	gi|529077334|ref|YP_008376337.1|	-	0.0032	16.8	0.1	0.0066	15.8	0.0	1.5	2	0	0	2	2	2	1	Arginosuccinate	synthase
PAPS_reduct	PF01507.19	gi|529077334|ref|YP_008376337.1|	-	0.024	14.7	0.0	0.052	13.6	0.0	1.5	1	1	1	2	2	2	0	Phosphoadenosine	phosphosulfate	reductase	family
ThiI	PF02568.14	gi|529077334|ref|YP_008376337.1|	-	0.21	11.2	0.0	0.41	10.2	0.0	1.5	1	1	0	1	1	1	0	Thiamine	biosynthesis	protein	(ThiI)
TatC	PF00902.18	gi|529077335|ref|YP_008376338.1|	-	7.5e-37	127.2	18.7	7.5e-37	127.2	18.7	3.1	4	0	0	4	4	4	1	Sec-independent	protein	translocase	protein	(TatC)
DHHC	PF01529.20	gi|529077335|ref|YP_008376338.1|	-	0.12	12.4	2.8	0.29	11.3	2.8	1.6	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
TatC	PF00902.18	gi|529077336|ref|YP_008376339.1|	-	2.5e-68	230.0	36.6	5.6e-36	124.3	13.2	2.4	3	0	0	3	3	3	2	Sec-independent	protein	translocase	protein	(TatC)
MFS_Mycoplasma	PF07672.13	gi|529077336|ref|YP_008376339.1|	-	0.0051	16.1	2.3	0.0051	16.1	2.3	2.4	3	0	0	3	3	3	1	Mycoplasma	MFS	transporter
QCR10	PF09796.9	gi|529077336|ref|YP_008376339.1|	-	1	9.5	0.0	1	9.5	0.0	3.6	4	0	0	4	4	4	0	Ubiquinol-cytochrome-c	reductase	complex	subunit	(QCR10)
Flavodoxin_5	PF12724.7	gi|529077337|ref|YP_008376340.1|	-	1.8e-37	128.8	0.0	2.3e-37	128.4	0.0	1.1	1	0	0	1	1	1	1	Flavodoxin	domain
Flavodoxin_1	PF00258.25	gi|529077337|ref|YP_008376340.1|	-	7.3e-05	23.0	0.0	0.00012	22.3	0.0	1.7	1	1	0	1	1	1	1	Flavodoxin
Flavodoxin_3	PF12641.7	gi|529077337|ref|YP_008376340.1|	-	0.0071	16.1	0.0	0.025	14.2	0.0	1.8	2	0	0	2	2	2	1	Flavodoxin	domain
RHH_1	PF01402.21	gi|529077338|ref|YP_008376341.1|	-	0.001	18.9	1.8	0.011	15.7	0.2	2.1	1	1	1	2	2	2	2	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|529077338|ref|YP_008376341.1|	-	0.028	14.6	0.1	0.029	14.5	0.1	1.1	1	0	0	1	1	1	0	Ribbon-Helix-Helix	transcriptional	regulator	family
Vut_1	PF02592.15	gi|529077339|ref|YP_008376342.1|	-	4.9e-49	166.5	6.0	7.2e-49	166.0	6.0	1.2	1	0	0	1	1	1	1	Putative	vitamin	uptake	transporter
HTH_20	PF12840.7	gi|529077340|ref|YP_008376343.1|	-	7.2e-14	51.6	0.2	1.1e-13	51.0	0.2	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|529077340|ref|YP_008376343.1|	-	4.4e-07	29.7	0.0	8.9e-07	28.7	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_34	PF13601.6	gi|529077340|ref|YP_008376343.1|	-	6.8e-06	26.2	0.0	9.3e-06	25.7	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|529077340|ref|YP_008376343.1|	-	3.4e-05	23.6	0.0	5.2e-05	23.0	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|529077340|ref|YP_008376343.1|	-	4.4e-05	23.3	0.0	8.3e-05	22.4	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|529077340|ref|YP_008376343.1|	-	6.5e-05	22.4	0.0	0.0001	21.7	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TFIIE_alpha	PF02002.17	gi|529077340|ref|YP_008376343.1|	-	0.00013	21.7	0.0	0.00016	21.4	0.0	1.2	1	0	0	1	1	1	1	TFIIE	alpha	subunit
TrmB	PF01978.19	gi|529077340|ref|YP_008376343.1|	-	0.00014	21.7	0.0	0.00022	21.1	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|529077340|ref|YP_008376343.1|	-	0.00085	19.8	0.0	0.0014	19.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
B-block_TFIIIC	PF04182.12	gi|529077340|ref|YP_008376343.1|	-	0.0026	17.9	0.0	0.0048	17.0	0.0	1.4	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
HTH_micro	PF17007.5	gi|529077340|ref|YP_008376343.1|	-	0.0049	15.7	0.0	0.0049	15.7	0.0	1.0	1	0	0	1	1	1	1	HTH-like
PadR	PF03551.14	gi|529077340|ref|YP_008376343.1|	-	0.12	12.3	0.0	0.73	9.8	0.0	1.9	1	1	1	2	2	2	0	Transcriptional	regulator	PadR-like	family
HTH_10	PF04967.12	gi|529077343|ref|YP_008376346.1|	-	6.6e-15	54.6	0.0	1.2e-14	53.8	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|529077343|ref|YP_008376346.1|	-	6.9e-11	42.3	7.4	6.9e-11	42.3	7.4	1.8	2	0	0	2	2	2	1	GAF	and	HTH_10	associated	domain
Sigma70_r4	PF04545.16	gi|529077343|ref|YP_008376346.1|	-	0.00055	19.4	0.0	0.001	18.5	0.0	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
Sigma70_r4_2	PF08281.12	gi|529077343|ref|YP_008376346.1|	-	0.0013	18.3	0.1	0.0025	17.5	0.1	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_20	PF12840.7	gi|529077343|ref|YP_008376346.1|	-	0.0023	18.0	0.0	0.0055	16.7	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_psq	PF05225.16	gi|529077343|ref|YP_008376346.1|	-	0.0071	16.1	0.0	0.022	14.5	0.0	1.8	1	1	0	1	1	1	1	helix-turn-helix,	Psq	domain
HTH_AsnC-type	PF13404.6	gi|529077343|ref|YP_008376346.1|	-	0.02	14.7	0.3	0.056	13.3	0.3	1.7	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|529077343|ref|YP_008376346.1|	-	0.041	13.4	0.0	0.068	12.7	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
TusA	PF01206.17	gi|529077343|ref|YP_008376346.1|	-	0.18	11.6	0.0	0.42	10.5	0.0	1.6	1	0	0	1	1	1	0	Sulfurtransferase	TusA
HNH	PF01844.23	gi|529077344|ref|YP_008376347.1|	-	1.6e-05	25.0	2.9	0.00012	22.1	2.9	2.1	1	1	0	1	1	1	1	HNH	endonuclease
ParE_toxin	PF05016.15	gi|529077345|ref|YP_008376348.1|	-	4.2e-06	27.3	0.1	5.1e-06	27.0	0.1	1.1	1	0	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
VAPB_antitox	PF02697.14	gi|529077346|ref|YP_008376349.1|	-	0.00035	21.3	0.1	0.0004	21.1	0.1	1.1	1	0	0	1	1	1	1	Putative	antitoxin
RDD	PF06271.12	gi|529077347|ref|YP_008376350.1|	-	2.3e-14	53.8	4.0	2.6e-14	53.6	4.0	1.1	1	0	0	1	1	1	1	RDD	family
MFS_1	PF07690.16	gi|529077348|ref|YP_008376351.1|	-	5.8e-28	97.8	60.7	2.1e-20	73.0	30.0	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|529077348|ref|YP_008376351.1|	-	0.42	9.4	20.2	1.5	7.6	0.0	3.1	2	1	0	3	3	3	0	MFS_1	like	family
Glyco_transf_36	PF06165.11	gi|529077349|ref|YP_008376352.1|	-	0.0098	15.3	0.0	0.021	14.2	0.0	1.5	1	1	0	1	1	1	1	Glycosyltransferase	family	36
Glyco_hydro_36	PF17167.4	gi|529077350|ref|YP_008376353.1|	-	7.5e-28	97.4	3.8	2.6e-13	49.5	0.1	3.2	2	1	0	2	2	2	2	Glycosyl	hydrolase	36	superfamily,	catalytic	domain
Glyco_transf_36	PF06165.11	gi|529077350|ref|YP_008376353.1|	-	6.8e-10	38.8	0.0	1.1e-09	38.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	family	36
ANT	PF03374.14	gi|529077350|ref|YP_008376353.1|	-	0.023	15.0	0.1	0.058	13.7	0.1	1.7	1	0	0	1	1	1	0	Phage	antirepressor	protein	KilAC	domain
DUF4250	PF14056.6	gi|529077350|ref|YP_008376353.1|	-	0.29	11.1	1.6	3.3	7.7	0.2	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4250)
PqqD	PF05402.12	gi|529077350|ref|YP_008376353.1|	-	0.56	10.5	2.6	0.75	10.1	0.5	2.3	2	0	0	2	2	2	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
Glyco_hydro_3	PF00933.21	gi|529077351|ref|YP_008376354.1|	-	2.6e-79	266.9	0.0	3.5e-79	266.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.22	gi|529077351|ref|YP_008376354.1|	-	6.5e-48	163.4	0.0	1.1e-47	162.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.6	gi|529077351|ref|YP_008376354.1|	-	3.7e-24	84.6	0.8	1e-23	83.2	0.2	2.1	2	0	0	2	2	2	1	Fibronectin	type	III-like	domain
DUF11	PF01345.18	gi|529077351|ref|YP_008376354.1|	-	0.046	14.0	0.5	0.16	12.3	0.5	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	DUF11
hnRNP_Q_AcD	PF18360.1	gi|529077351|ref|YP_008376354.1|	-	0.5	10.4	3.2	1.2	9.1	0.5	2.3	2	0	0	2	2	2	0	Heterogeneous	nuclear	ribonucleoprotein	Q	acidic	domain
NTP_transferase	PF00483.23	gi|529077352|ref|YP_008376355.1|	-	3.9e-35	121.6	0.0	4.7e-35	121.4	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|529077352|ref|YP_008376355.1|	-	2.4e-09	37.8	0.0	3e-09	37.5	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|529077352|ref|YP_008376355.1|	-	0.028	14.2	0.0	0.048	13.4	0.0	1.4	1	0	0	1	1	1	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Glycos_transf_1	PF00534.20	gi|529077353|ref|YP_008376356.1|	-	3.3e-27	95.1	0.0	6.9e-27	94.1	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|529077353|ref|YP_008376356.1|	-	4.9e-24	85.3	0.1	8.2e-24	84.5	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|529077353|ref|YP_008376356.1|	-	4.1e-17	62.7	0.2	8.6e-17	61.7	0.0	1.6	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|529077353|ref|YP_008376356.1|	-	8.1e-14	52.4	0.8	1.5e-13	51.5	0.2	1.7	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_transf_5	PF08323.11	gi|529077353|ref|YP_008376356.1|	-	6.6e-05	22.7	0.0	0.00042	20.1	0.0	2.1	1	1	0	1	1	1	1	Starch	synthase	catalytic	domain
Lsm_C	PF14894.6	gi|529077353|ref|YP_008376356.1|	-	0.062	13.1	0.1	0.34	10.7	0.0	2.2	2	0	0	2	2	2	0	Lsm	C-terminal
Regulator_TrmB	PF11495.8	gi|529077355|ref|YP_008376358.1|	-	9.2e-65	218.1	1.9	1.2e-64	217.8	1.9	1.1	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.19	gi|529077355|ref|YP_008376358.1|	-	4.5e-18	64.9	0.0	9.7e-18	63.8	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|529077355|ref|YP_008376358.1|	-	2.8e-05	23.9	0.1	9.3e-05	22.2	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_5	PF01022.20	gi|529077355|ref|YP_008376358.1|	-	0.00015	21.6	0.0	0.00033	20.4	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
PadR	PF03551.14	gi|529077355|ref|YP_008376358.1|	-	0.0017	18.3	0.1	0.0053	16.7	0.0	1.8	1	1	1	2	2	2	1	Transcriptional	regulator	PadR-like	family
PPE	PF00823.19	gi|529077355|ref|YP_008376358.1|	-	0.0058	16.7	0.0	0.011	15.9	0.0	1.3	1	0	0	1	1	1	1	PPE	family
Rrf2	PF02082.20	gi|529077355|ref|YP_008376358.1|	-	0.0088	16.4	0.0	0.017	15.5	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_20	PF12840.7	gi|529077355|ref|YP_008376358.1|	-	0.01	15.9	0.0	0.027	14.5	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|529077355|ref|YP_008376358.1|	-	0.016	14.8	0.0	0.031	13.9	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|529077355|ref|YP_008376358.1|	-	0.017	15.1	0.0	0.04	13.8	0.0	1.6	1	0	0	1	1	1	0	MarR	family
HTH_IclR	PF09339.10	gi|529077355|ref|YP_008376358.1|	-	0.017	14.9	0.0	0.035	13.9	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_27	PF13463.6	gi|529077355|ref|YP_008376358.1|	-	0.05	14.1	0.0	0.13	12.8	0.0	1.7	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.6	gi|529077355|ref|YP_008376358.1|	-	0.13	12.3	0.0	0.27	11.2	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|529077355|ref|YP_008376358.1|	-	0.13	12.4	0.2	0.37	11.0	0.0	1.8	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Av_adeno_fibre	PF06536.11	gi|529077355|ref|YP_008376358.1|	-	0.15	11.9	0.1	1.3	8.9	0.0	2.4	2	0	0	2	2	2	0	Avian	adenovirus	fibre,	N-terminal
ABC_tran	PF00005.27	gi|529077357|ref|YP_008376360.1|	-	3.2e-35	121.6	0.0	5.2e-35	120.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
OB_MalK	PF17912.1	gi|529077357|ref|YP_008376360.1|	-	2.1e-12	47.7	0.0	8.1e-12	45.8	0.0	2.1	1	0	0	1	1	1	1	MalK	OB	fold	domain
AAA_21	PF13304.6	gi|529077357|ref|YP_008376360.1|	-	2.7e-09	37.3	0.1	0.0012	18.7	0.2	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TOBE_2	PF08402.10	gi|529077357|ref|YP_008376360.1|	-	1.1e-05	25.5	1.9	0.00085	19.4	0.4	3.4	1	1	1	2	2	2	2	TOBE	domain
SMC_N	PF02463.19	gi|529077357|ref|YP_008376360.1|	-	1.1e-05	25.0	0.3	0.00018	21.1	0.3	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
CysA_C_terminal	PF17850.1	gi|529077357|ref|YP_008376360.1|	-	3.2e-05	24.4	0.3	0.00033	21.2	0.1	2.6	2	0	0	2	2	2	1	CysA	C-terminal	regulatory	domain
AAA_15	PF13175.6	gi|529077357|ref|YP_008376360.1|	-	0.00013	21.9	0.1	0.068	12.9	0.0	2.1	1	1	1	2	2	2	2	AAA	ATPase	domain
TOBE	PF03459.17	gi|529077357|ref|YP_008376360.1|	-	0.00037	20.7	0.6	0.12	12.7	0.2	3.4	2	1	0	2	2	2	1	TOBE	domain
AAA_16	PF13191.6	gi|529077357|ref|YP_008376360.1|	-	0.0012	19.3	0.1	0.0029	18.0	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|529077357|ref|YP_008376360.1|	-	0.0025	17.8	0.1	0.0093	15.9	0.0	1.9	2	0	0	2	2	2	1	RsgA	GTPase
AAA_22	PF13401.6	gi|529077357|ref|YP_008376360.1|	-	0.0036	17.6	1.2	0.015	15.5	1.2	2.0	1	1	0	1	1	1	1	AAA	domain
Rad17	PF03215.15	gi|529077357|ref|YP_008376360.1|	-	0.0058	16.6	0.0	0.0086	16.0	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_29	PF13555.6	gi|529077357|ref|YP_008376360.1|	-	0.013	15.3	0.0	0.03	14.1	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_5	PF07728.14	gi|529077357|ref|YP_008376360.1|	-	0.014	15.4	0.0	0.035	14.1	0.0	1.7	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_28	PF13521.6	gi|529077357|ref|YP_008376360.1|	-	0.041	14.1	0.3	0.12	12.6	0.1	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|529077357|ref|YP_008376360.1|	-	0.052	13.7	0.1	0.11	12.6	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|529077357|ref|YP_008376360.1|	-	0.061	13.8	0.0	0.11	13.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|529077357|ref|YP_008376360.1|	-	0.063	13.7	0.3	0.21	12.0	0.0	1.9	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zeta_toxin	PF06414.12	gi|529077357|ref|YP_008376360.1|	-	0.11	11.8	0.0	0.33	10.2	0.0	1.7	2	0	0	2	2	2	0	Zeta	toxin
AAA_18	PF13238.6	gi|529077357|ref|YP_008376360.1|	-	0.12	13.0	0.4	0.57	10.7	0.2	2.4	2	2	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.22	gi|529077357|ref|YP_008376360.1|	-	0.14	12.6	0.0	0.32	11.4	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
BPD_transp_1	PF00528.22	gi|529077358|ref|YP_008376361.1|	-	2.2e-12	47.1	19.9	2.2e-12	47.1	19.9	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|529077359|ref|YP_008376362.1|	-	2.4e-15	56.7	17.3	2.4e-15	56.7	17.3	2.5	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_1	PF01547.25	gi|529077360|ref|YP_008376363.1|	-	5.3e-21	75.9	1.1	7.8e-21	75.3	1.1	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.6	gi|529077360|ref|YP_008376363.1|	-	1.2e-17	64.6	2.5	1.2e-17	64.6	2.5	1.5	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
PfkB	PF00294.24	gi|529077361|ref|YP_008376364.1|	-	3e-56	190.9	0.6	3.4e-56	190.8	0.6	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Phosphorylase	PF00343.20	gi|529077362|ref|YP_008376365.1|	-	4.4e-22	78.2	0.0	2.9e-14	52.3	0.0	3.3	3	1	0	3	3	3	3	Carbohydrate	phosphorylase
Glyco_transf_5	PF08323.11	gi|529077362|ref|YP_008376365.1|	-	8.8e-06	25.6	0.0	2.1e-05	24.3	0.0	1.6	2	0	0	2	2	2	1	Starch	synthase	catalytic	domain
Glyco_hydro_77	PF02446.17	gi|529077363|ref|YP_008376366.1|	-	6.2e-153	510.0	0.1	7.6e-153	509.7	0.1	1.0	1	0	0	1	1	1	1	4-alpha-glucanotransferase
MazE_antitoxin	PF04014.18	gi|529077364|ref|YP_008376367.1|	-	4.2e-05	23.4	0.1	5.9e-05	22.9	0.1	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|529077364|ref|YP_008376367.1|	-	0.0005	20.5	0.0	0.00063	20.1	0.0	1.1	1	0	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
PQQ	PF01011.21	gi|529077364|ref|YP_008376367.1|	-	0.013	15.4	0.7	0.13	12.2	0.0	2.3	1	1	1	2	2	2	0	PQQ	enzyme	repeat
Inhibitor_I53	PF11714.8	gi|529077364|ref|YP_008376367.1|	-	0.22	11.7	1.0	0.26	11.5	1.0	1.3	1	0	0	1	1	1	0	Thrombin	inhibitor	Madanin
PIN	PF01850.21	gi|529077365|ref|YP_008376368.1|	-	1.4e-17	64.3	2.1	1.6e-17	64.1	2.1	1.0	1	0	0	1	1	1	1	PIN	domain
Alpha-amylase	PF00128.24	gi|529077366|ref|YP_008376369.1|	-	2.9e-47	161.9	0.2	1.1e-44	153.4	0.2	2.4	1	1	0	1	1	1	1	Alpha	amylase,	catalytic	domain
Malt_amylase_C	PF16657.5	gi|529077366|ref|YP_008376369.1|	-	7.4e-07	29.2	0.0	2.1e-06	27.7	0.0	1.8	1	0	0	1	1	1	1	Maltogenic	Amylase,	C-terminal	domain
Glyco_hydro_42C	PF08533.10	gi|529077366|ref|YP_008376369.1|	-	3.7e-05	23.4	0.1	0.00026	20.7	0.0	2.3	2	0	0	2	2	2	1	Beta-galactosidase	C-terminal	domain
Alpha-amylase_C	PF02806.18	gi|529077366|ref|YP_008376369.1|	-	0.00096	19.6	0.0	0.035	14.6	0.0	2.6	2	0	0	2	2	2	1	Alpha	amylase,	C-terminal	all-beta	domain
hDGE_amylase	PF14701.6	gi|529077366|ref|YP_008376369.1|	-	0.0019	17.4	0.0	0.0069	15.5	0.0	1.7	2	0	0	2	2	2	1	Glycogen	debranching	enzyme,	glucanotransferase	domain
DUF3459	PF11941.8	gi|529077366|ref|YP_008376369.1|	-	0.0047	17.2	0.0	0.013	15.8	0.0	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3459)
Alpha-amylase	PF00128.24	gi|529077367|ref|YP_008376370.1|	-	1.2e-38	133.5	0.0	2.1e-38	132.8	0.0	1.3	1	0	0	1	1	1	1	Alpha	amylase,	catalytic	domain
Alpha-amylase_C	PF02806.18	gi|529077367|ref|YP_008376370.1|	-	0.00037	20.9	0.0	0.0011	19.4	0.0	1.8	1	0	0	1	1	1	1	Alpha	amylase,	C-terminal	all-beta	domain
Malt_amylase_C	PF16657.5	gi|529077367|ref|YP_008376370.1|	-	0.0022	18.1	0.0	0.0062	16.6	0.0	1.8	1	0	0	1	1	1	1	Maltogenic	Amylase,	C-terminal	domain
HTH_32	PF13565.6	gi|529077369|ref|YP_008376372.1|	-	3.6e-15	56.3	1.1	4.6e-15	56.0	1.1	1.1	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|529077369|ref|YP_008376372.1|	-	5.3e-09	36.0	0.3	1e-08	35.1	0.3	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|529077369|ref|YP_008376372.1|	-	1.3e-08	34.4	0.2	7.6e-07	28.8	0.0	2.7	2	1	1	3	3	3	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|529077369|ref|YP_008376372.1|	-	7.2e-05	22.8	0.1	0.00075	19.6	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_Tnp_Tc3_2	PF01498.18	gi|529077369|ref|YP_008376372.1|	-	0.076	13.3	0.0	0.14	12.4	0.0	1.5	1	0	0	1	1	1	0	Transposase
Sigma70_r4_2	PF08281.12	gi|529077369|ref|YP_008376372.1|	-	0.079	12.6	0.0	0.16	11.7	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
DDE_3	PF13358.6	gi|529077370|ref|YP_008376373.1|	-	7.7e-27	93.8	0.0	9.9e-27	93.5	0.0	1.1	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DUF2389	PF09493.10	gi|529077370|ref|YP_008376373.1|	-	0.12	13.0	0.3	0.9	10.2	0.0	2.6	3	0	0	3	3	3	0	Tryptophan-rich	protein	(DUF2389)
VWA	PF00092.28	gi|529077371|ref|YP_008376374.1|	-	6.1e-23	82.0	0.2	1.3e-22	80.9	0.2	1.6	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_2	PF13519.6	gi|529077371|ref|YP_008376374.1|	-	2.6e-17	63.4	2.1	6.1e-17	62.2	0.1	2.6	3	0	0	3	3	3	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.14	gi|529077371|ref|YP_008376374.1|	-	0.002	17.5	0.1	0.0041	16.5	0.1	1.4	1	0	0	1	1	1	1	VWA	domain	containing	CoxE-like	protein
Reprolysin_3	PF13582.6	gi|529077371|ref|YP_008376374.1|	-	0.046	14.2	0.2	0.046	14.2	0.2	3.1	3	0	0	3	3	3	0	Metallo-peptidase	family	M12B	Reprolysin-like
Alpha-amylase	PF00128.24	gi|529077372|ref|YP_008376375.1|	-	7.3e-38	131.0	0.0	8.6e-36	124.2	0.0	2.2	2	0	0	2	2	2	2	Alpha	amylase,	catalytic	domain
CBM_20	PF00686.19	gi|529077372|ref|YP_008376375.1|	-	3.3e-15	55.8	0.0	6e-15	54.9	0.0	1.4	1	0	0	1	1	1	1	Starch	binding	domain
Malt_amylase_C	PF16657.5	gi|529077372|ref|YP_008376375.1|	-	7e-07	29.3	0.0	1.6e-06	28.1	0.0	1.6	1	0	0	1	1	1	1	Maltogenic	Amylase,	C-terminal	domain
hDGE_amylase	PF14701.6	gi|529077372|ref|YP_008376375.1|	-	3.4e-06	26.4	0.0	4.8e-06	25.9	0.0	1.2	1	0	0	1	1	1	1	Glycogen	debranching	enzyme,	glucanotransferase	domain
Alpha-amylase	PF00128.24	gi|529077373|ref|YP_008376376.1|	-	9.4e-66	222.7	0.1	2.3e-59	201.7	0.1	2.1	2	0	0	2	2	2	2	Alpha	amylase,	catalytic	domain
GHL6	PF14871.6	gi|529077373|ref|YP_008376376.1|	-	0.03	14.5	0.0	0.073	13.2	0.0	1.6	1	0	0	1	1	1	0	Hypothetical	glycosyl	hydrolase	6
Radical_SAM	PF04055.21	gi|529077373|ref|YP_008376376.1|	-	0.12	12.7	0.0	0.38	11.1	0.0	1.8	1	0	0	1	1	1	0	Radical	SAM	superfamily
Alpha-amylase	PF00128.24	gi|529077374|ref|YP_008376377.1|	-	9.4e-110	367.3	0.0	1.4e-109	366.8	0.0	1.2	1	0	0	1	1	1	1	Alpha	amylase,	catalytic	domain
Malt_amylase_C	PF16657.5	gi|529077374|ref|YP_008376377.1|	-	2.4e-09	37.2	0.0	5.7e-09	36.0	0.0	1.7	1	0	0	1	1	1	1	Maltogenic	Amylase,	C-terminal	domain
DUF3459	PF11941.8	gi|529077374|ref|YP_008376377.1|	-	0.00033	20.9	0.0	0.00085	19.6	0.0	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3459)
hDGE_amylase	PF14701.6	gi|529077374|ref|YP_008376377.1|	-	0.016	14.3	0.0	0.023	13.8	0.0	1.1	1	0	0	1	1	1	0	Glycogen	debranching	enzyme,	glucanotransferase	domain
Alpha-amylase_C	PF02806.18	gi|529077374|ref|YP_008376377.1|	-	0.07	13.6	0.0	0.21	12.1	0.0	1.8	1	0	0	1	1	1	0	Alpha	amylase,	C-terminal	all-beta	domain
Alpha-amylase	PF00128.24	gi|529077375|ref|YP_008376378.1|	-	9.9e-118	393.5	1.3	1.5e-117	393.0	1.3	1.2	1	0	0	1	1	1	1	Alpha	amylase,	catalytic	domain
Malt_amylase_C	PF16657.5	gi|529077375|ref|YP_008376378.1|	-	2.8e-10	40.1	0.0	5.5e-10	39.2	0.0	1.5	1	0	0	1	1	1	1	Maltogenic	Amylase,	C-terminal	domain
DUF3459	PF11941.8	gi|529077375|ref|YP_008376378.1|	-	0.0003	21.1	0.0	0.00067	19.9	0.0	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3459)
Glyco_hydro_42C	PF08533.10	gi|529077375|ref|YP_008376378.1|	-	0.0098	15.6	0.0	0.072	12.8	0.0	2.4	2	1	0	2	2	2	1	Beta-galactosidase	C-terminal	domain
hDGE_amylase	PF14701.6	gi|529077375|ref|YP_008376378.1|	-	0.022	13.9	0.0	0.04	13.0	0.0	1.3	1	0	0	1	1	1	0	Glycogen	debranching	enzyme,	glucanotransferase	domain
Cyc-maltodext_C	PF10438.9	gi|529077375|ref|YP_008376378.1|	-	0.027	14.5	0.0	0.056	13.5	0.0	1.4	1	0	0	1	1	1	0	Cyclo-malto-dextrinase	C-terminal	domain
Alpha-amylase_C	PF02806.18	gi|529077375|ref|YP_008376378.1|	-	0.11	13.0	0.0	1.7	9.2	0.0	2.5	2	0	0	2	2	2	0	Alpha	amylase,	C-terminal	all-beta	domain
Regulator_TrmB	PF11495.8	gi|529077376|ref|YP_008376379.1|	-	4.4e-42	143.9	0.0	5.8e-42	143.5	0.0	1.2	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.19	gi|529077376|ref|YP_008376379.1|	-	5.5e-15	55.0	0.2	1.5e-14	53.6	0.0	1.8	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|529077376|ref|YP_008376379.1|	-	0.0035	17.2	0.2	0.0091	15.9	0.2	1.7	1	0	0	1	1	1	1	MarR	family
PLDc_2	PF13091.6	gi|529077376|ref|YP_008376379.1|	-	0.0096	15.8	0.0	0.019	14.9	0.0	1.5	1	0	0	1	1	1	1	PLD-like	domain
TetR_N	PF00440.23	gi|529077376|ref|YP_008376379.1|	-	0.012	15.4	0.0	0.035	13.9	0.0	1.9	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
Rrf2	PF02082.20	gi|529077376|ref|YP_008376379.1|	-	0.042	14.2	0.0	0.094	13.1	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
SLATT_fungal	PF18142.1	gi|529077376|ref|YP_008376379.1|	-	0.079	13.0	0.5	0.34	10.9	0.5	2.0	1	1	1	2	2	2	0	SMODS	and	SLOG-associating	2TM	effector	domain
HTH_28	PF13518.6	gi|529077376|ref|YP_008376379.1|	-	0.088	12.9	1.1	0.19	11.9	0.1	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|529077376|ref|YP_008376379.1|	-	0.097	12.5	0.6	0.29	11.0	0.1	2.0	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_47	PF16221.5	gi|529077376|ref|YP_008376379.1|	-	0.14	11.8	0.0	0.33	10.6	0.0	1.7	1	0	0	1	1	1	0	winged	helix-turn-helix
HTH_20	PF12840.7	gi|529077376|ref|YP_008376379.1|	-	0.26	11.4	2.2	0.32	11.1	0.3	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
Glyco_hydro_31	PF01055.26	gi|529077377|ref|YP_008376380.1|	-	2.4e-98	330.2	8.1	3e-98	329.9	8.1	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	31
DUF5110	PF17137.4	gi|529077377|ref|YP_008376380.1|	-	5.7e-18	64.9	0.2	2.6e-17	62.8	0.2	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF5110)
DUF4968	PF16338.5	gi|529077377|ref|YP_008376380.1|	-	3.1e-07	30.6	0.0	7.2e-07	29.4	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4968)
Glyco_hydro_32N	PF00251.20	gi|529077378|ref|YP_008376381.1|	-	9.8e-77	258.5	0.0	1.3e-76	258.1	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	32	N-terminal	domain
Glyco_hydro_32C	PF08244.12	gi|529077378|ref|YP_008376381.1|	-	7.6e-30	104.0	0.0	1.2e-29	103.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	32	C	terminal
Glyco_hydro_43	PF04616.14	gi|529077378|ref|YP_008376381.1|	-	0.00067	19.1	0.3	0.2	11.0	0.1	2.6	2	1	0	2	2	2	2	Glycosyl	hydrolases	family	43
DUF4975	PF16346.5	gi|529077378|ref|YP_008376381.1|	-	0.001	19.2	0.0	0.0015	18.7	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4975)
zinc_ribbon_9	PF14369.6	gi|529077379|ref|YP_008376382.1|	-	0.45	10.8	4.0	4.6	7.6	1.9	2.4	2	0	0	2	2	2	0	zinc-ribbon
zf-ribbon_3	PF13248.6	gi|529077379|ref|YP_008376382.1|	-	0.67	9.4	4.4	7.1	6.2	1.3	2.6	2	0	0	2	2	2	0	zinc-ribbon	domain
Usp	PF00582.26	gi|529077380|ref|YP_008376383.1|	-	1e-21	77.9	1.3	1.3e-21	77.6	1.3	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
DNA_photolyase	PF00875.18	gi|529077380|ref|YP_008376383.1|	-	0.013	15.5	0.0	0.017	15.2	0.0	1.1	1	0	0	1	1	1	0	DNA	photolyase
GSIII_N	PF12437.8	gi|529077380|ref|YP_008376383.1|	-	0.1	12.3	0.0	0.12	12.0	0.0	1.2	1	0	0	1	1	1	0	Glutamine	synthetase	type	III	N	terminal
AAA_16	PF13191.6	gi|529077382|ref|YP_008376385.1|	-	1.1e-10	42.2	0.3	1e-08	35.8	0.0	2.7	2	1	1	3	3	3	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|529077382|ref|YP_008376385.1|	-	5.2e-08	33.3	0.0	9.5e-08	32.4	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
Cdc6_C	PF09079.11	gi|529077382|ref|YP_008376385.1|	-	1.2e-05	25.2	0.0	3.3e-05	23.8	0.0	1.8	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA	PF00004.29	gi|529077382|ref|YP_008376385.1|	-	0.00034	21.1	0.0	0.00088	19.7	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.6	gi|529077382|ref|YP_008376385.1|	-	0.00038	20.6	0.0	0.0028	17.8	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
MarR_2	PF12802.7	gi|529077382|ref|YP_008376385.1|	-	0.00054	19.8	0.0	0.0021	17.9	0.0	2.0	1	1	0	1	1	1	1	MarR	family
Penicillinase_R	PF03965.16	gi|529077382|ref|YP_008376385.1|	-	0.004	17.5	0.0	0.042	14.2	0.0	2.4	3	0	0	3	3	2	1	Penicillinase	repressor
AAA_30	PF13604.6	gi|529077382|ref|YP_008376385.1|	-	0.0081	15.9	0.2	0.021	14.6	0.0	1.7	2	0	0	2	2	1	1	AAA	domain
AAA_18	PF13238.6	gi|529077382|ref|YP_008376385.1|	-	0.013	16.0	0.0	0.033	14.7	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_11	PF13086.6	gi|529077382|ref|YP_008376385.1|	-	0.013	15.3	0.0	0.027	14.2	0.0	1.4	2	0	0	2	2	2	0	AAA	domain
AAA_7	PF12775.7	gi|529077382|ref|YP_008376385.1|	-	0.014	14.9	0.0	0.034	13.7	0.0	1.6	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
Rad17	PF03215.15	gi|529077382|ref|YP_008376385.1|	-	0.015	15.3	0.0	0.031	14.2	0.0	1.6	1	1	0	1	1	1	0	Rad17	P-loop	domain
T2SSE	PF00437.20	gi|529077382|ref|YP_008376385.1|	-	0.019	14.0	0.0	0.031	13.3	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
NTPase_1	PF03266.15	gi|529077382|ref|YP_008376385.1|	-	0.02	14.8	0.0	0.041	13.8	0.0	1.5	1	0	0	1	1	1	0	NTPase
HTH_27	PF13463.6	gi|529077382|ref|YP_008376385.1|	-	0.024	15.2	0.1	0.047	14.2	0.1	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Zeta_toxin	PF06414.12	gi|529077382|ref|YP_008376385.1|	-	0.025	13.9	0.0	0.045	13.0	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA_19	PF13245.6	gi|529077382|ref|YP_008376385.1|	-	0.029	14.7	0.0	0.046	14.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
CbiA	PF01656.23	gi|529077382|ref|YP_008376385.1|	-	0.047	13.7	0.0	0.094	12.8	0.0	1.4	1	0	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_14	PF13173.6	gi|529077382|ref|YP_008376385.1|	-	0.047	13.7	0.0	0.17	11.9	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
Sigma54_activat	PF00158.26	gi|529077382|ref|YP_008376385.1|	-	0.081	12.6	0.0	0.14	11.9	0.0	1.3	1	0	0	1	1	1	0	Sigma-54	interaction	domain
Viral_helicase1	PF01443.18	gi|529077382|ref|YP_008376385.1|	-	0.094	12.4	0.0	0.15	11.8	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
Mg_chelatase	PF01078.21	gi|529077382|ref|YP_008376385.1|	-	0.096	12.1	0.0	0.17	11.2	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
NACHT	PF05729.12	gi|529077382|ref|YP_008376385.1|	-	0.1	12.5	0.0	0.18	11.7	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
AAA_6	PF12774.7	gi|529077382|ref|YP_008376385.1|	-	0.16	10.9	0.0	0.26	10.2	0.0	1.3	1	0	0	1	1	1	0	Hydrolytic	ATP	binding	site	of	dynein	motor	region
DUF1104	PF06518.11	gi|529077384|ref|YP_008376387.1|	-	0.013	15.9	0.4	15	6.0	0.1	3.5	1	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1104)
Peptidase_A8	PF01252.18	gi|529077384|ref|YP_008376387.1|	-	0.044	14.0	1.0	0.095	12.9	1.0	1.6	1	0	0	1	1	1	0	Signal	peptidase	(SPase)	II
DUF1816	PF08846.10	gi|529077384|ref|YP_008376387.1|	-	0.086	12.9	1.4	8.6	6.5	0.1	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1816)
DUF3886	PF13025.6	gi|529077384|ref|YP_008376387.1|	-	0.41	10.9	15.1	4.6	7.5	2.3	3.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3886)
MccV	PF17508.2	gi|529077384|ref|YP_008376387.1|	-	3.2	8.3	4.3	1.6	9.3	0.4	2.6	2	0	0	2	2	2	0	Microcin	V	bacteriocin
DUF2939	PF11159.8	gi|529077384|ref|YP_008376387.1|	-	4	7.9	15.7	21	5.6	0.1	5.8	4	2	1	5	5	5	0	Protein	of	unknown	function	(DUF2939)
OrfB_Zn_ribbon	PF07282.11	gi|529077385|ref|YP_008376388.1|	-	1.1e-24	86.1	0.3	2.1e-24	85.2	0.3	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
zf-HC5HC2H_2	PF13832.6	gi|529077385|ref|YP_008376388.1|	-	0.048	13.8	0.0	0.094	12.9	0.0	1.4	1	0	0	1	1	1	0	PHD-zinc-finger	like	domain
Y1_Tnp	PF01797.16	gi|529077386|ref|YP_008376389.1|	-	2.6e-37	127.6	0.0	2.9e-37	127.5	0.0	1.0	1	0	0	1	1	1	1	Transposase	IS200	like
DUF751	PF05421.11	gi|529077387|ref|YP_008376390.1|	-	0.23	12.2	6.0	0.25	12.1	0.1	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF751)
HTH_20	PF12840.7	gi|529077388|ref|YP_008376391.1|	-	0.00045	20.2	0.9	0.0008	19.4	0.6	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|529077388|ref|YP_008376391.1|	-	0.068	13.1	0.1	0.12	12.4	0.1	1.4	1	0	0	1	1	1	0	HTH	domain
TrmB	PF01978.19	gi|529077388|ref|YP_008376391.1|	-	0.16	11.9	0.0	0.26	11.2	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Glycos_transf_2	PF00535.26	gi|529077390|ref|YP_008376393.1|	-	0.00069	19.5	0.1	0.00082	19.2	0.1	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Herpes_UL31	PF02718.14	gi|529077390|ref|YP_008376393.1|	-	0.027	13.4	0.1	0.035	13.1	0.1	1.0	1	0	0	1	1	1	0	Herpesvirus	UL31-like	protein
Xan_ur_permease	PF00860.20	gi|529077391|ref|YP_008376394.1|	-	6.2e-75	252.3	37.3	6.2e-75	252.3	37.3	1.8	2	1	0	2	2	2	1	Permease	family
Bap31	PF05529.12	gi|529077391|ref|YP_008376394.1|	-	0.0073	16.2	0.7	2.2	8.1	0.4	2.6	2	0	0	2	2	2	2	Bap31/Bap29	transmembrane	region
Polysacc_deac_1	PF01522.21	gi|529077392|ref|YP_008376395.1|	-	2e-15	56.8	0.0	4.3e-15	55.7	0.0	1.5	1	0	0	1	1	1	1	Polysaccharide	deacetylase
Trypan_PARP	PF05887.11	gi|529077392|ref|YP_008376395.1|	-	0.0064	16.5	17.4	0.013	15.4	17.4	1.5	1	0	0	1	1	1	1	Procyclic	acidic	repetitive	protein	(PARP)
TAT_signal	PF10518.9	gi|529077392|ref|YP_008376395.1|	-	0.0079	16.0	0.2	0.0079	16.0	0.2	1.8	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
CBM_48	PF02922.18	gi|529077392|ref|YP_008376395.1|	-	0.023	15.0	0.5	0.2	12.0	0.1	2.6	3	0	0	3	3	3	0	Carbohydrate-binding	module	48	(Isoamylase	N-terminal	domain)
DUF2635	PF10948.8	gi|529077392|ref|YP_008376395.1|	-	0.065	13.0	0.0	0.17	11.7	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2635)
NESP55	PF06390.12	gi|529077392|ref|YP_008376395.1|	-	0.18	11.4	15.3	0.29	10.7	15.3	1.3	1	0	0	1	1	1	0	Neuroendocrine-specific	golgi	protein	P55	(NESP55)
Polysacc_deac_1	PF01522.21	gi|529077393|ref|YP_008376396.1|	-	1.5e-07	31.3	0.0	3e-07	30.4	0.0	1.4	1	0	0	1	1	1	1	Polysaccharide	deacetylase
DUF2635	PF10948.8	gi|529077393|ref|YP_008376396.1|	-	0.046	13.5	0.0	0.12	12.1	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2635)
NESP55	PF06390.12	gi|529077393|ref|YP_008376396.1|	-	0.59	9.7	13.6	0.92	9.1	13.6	1.2	1	0	0	1	1	1	0	Neuroendocrine-specific	golgi	protein	P55	(NESP55)
Auto_anti-p27	PF06677.12	gi|529077394|ref|YP_008376397.1|	-	1.1e-14	54.2	0.4	1.6e-14	53.7	0.4	1.2	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zinc-ribbons_6	PF07191.12	gi|529077394|ref|YP_008376397.1|	-	0.034	14.1	0.7	0.058	13.4	0.7	1.3	1	0	0	1	1	1	0	zinc-ribbons
DZR	PF12773.7	gi|529077394|ref|YP_008376397.1|	-	0.045	13.8	1.0	0.08	13.0	1.0	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
HypA	PF01155.19	gi|529077394|ref|YP_008376397.1|	-	0.079	13.0	0.4	0.13	12.3	0.4	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Menin	PF05053.13	gi|529077394|ref|YP_008376397.1|	-	1.6	7.0	8.1	2.2	6.5	8.1	1.2	1	0	0	1	1	1	0	Menin
DUF2116	PF09889.9	gi|529077394|ref|YP_008376397.1|	-	3.7	7.6	5.7	14	5.8	0.9	2.2	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
Peripla_BP_4	PF13407.6	gi|529077395|ref|YP_008376398.1|	-	1.8e-44	152.3	1.0	2.4e-44	151.9	1.0	1.0	1	0	0	1	1	1	1	Periplasmic	binding	protein	domain
ABC_tran	PF00005.27	gi|529077396|ref|YP_008376399.1|	-	2e-33	115.8	0.0	3e-33	115.2	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529077396|ref|YP_008376399.1|	-	9.9e-13	48.6	0.2	1.2e-05	25.2	0.1	2.3	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
ABC_ATPase	PF09818.9	gi|529077396|ref|YP_008376399.1|	-	4e-07	29.2	1.3	0.03	13.1	0.3	3.0	2	1	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
SMC_N	PF02463.19	gi|529077396|ref|YP_008376399.1|	-	1.9e-06	27.5	0.2	0.00016	21.2	0.2	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|529077396|ref|YP_008376399.1|	-	2.1e-05	25.1	0.0	3.4e-05	24.5	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|529077396|ref|YP_008376399.1|	-	2.4e-05	24.0	0.0	4.8e-05	23.0	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|529077396|ref|YP_008376399.1|	-	0.00015	21.7	0.0	0.00031	20.7	0.0	1.5	1	0	0	1	1	1	1	RsgA	GTPase
AAA_30	PF13604.6	gi|529077396|ref|YP_008376399.1|	-	0.00024	20.9	1.7	0.0015	18.3	1.7	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|529077396|ref|YP_008376399.1|	-	0.0011	19.3	0.4	0.012	15.9	0.4	2.1	1	1	0	1	1	1	1	AAA	domain
MMR_HSR1	PF01926.23	gi|529077396|ref|YP_008376399.1|	-	0.0024	17.9	0.0	0.006	16.7	0.0	1.7	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
AAA_15	PF13175.6	gi|529077396|ref|YP_008376399.1|	-	0.0042	16.8	0.0	0.009	15.8	0.0	1.5	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|529077396|ref|YP_008376399.1|	-	0.0046	17.4	0.1	0.53	10.7	0.0	2.3	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|529077396|ref|YP_008376399.1|	-	0.0072	16.7	0.8	0.013	15.9	0.9	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_25	PF13481.6	gi|529077396|ref|YP_008376399.1|	-	0.0095	15.5	0.7	0.081	12.5	0.7	2.2	1	1	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|529077396|ref|YP_008376399.1|	-	0.0096	15.7	0.3	2.6	7.7	0.0	2.3	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
Dynamin_N	PF00350.23	gi|529077396|ref|YP_008376399.1|	-	0.014	15.4	0.0	0.024	14.7	0.0	1.4	1	0	0	1	1	1	0	Dynamin	family
TsaE	PF02367.17	gi|529077396|ref|YP_008376399.1|	-	0.022	14.7	0.0	0.039	13.9	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
FeoB_N	PF02421.18	gi|529077396|ref|YP_008376399.1|	-	0.028	13.9	0.0	0.082	12.4	0.0	1.8	1	0	0	1	1	1	0	Ferrous	iron	transport	protein	B
TniB	PF05621.11	gi|529077396|ref|YP_008376399.1|	-	0.028	13.8	0.0	4.2	6.7	0.0	2.2	2	0	0	2	2	2	0	Bacterial	TniB	protein
AAA_27	PF13514.6	gi|529077396|ref|YP_008376399.1|	-	0.047	13.3	0.0	0.082	12.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|529077396|ref|YP_008376399.1|	-	0.08	13.1	0.0	0.15	12.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
Roc	PF08477.13	gi|529077396|ref|YP_008376399.1|	-	0.082	13.1	0.0	0.14	12.4	0.0	1.4	1	0	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
MCM	PF00493.23	gi|529077396|ref|YP_008376399.1|	-	0.1	11.7	0.0	0.26	10.4	0.0	1.6	2	0	0	2	2	2	0	MCM	P-loop	domain
DUF815	PF05673.13	gi|529077396|ref|YP_008376399.1|	-	0.1	11.7	0.0	0.22	10.6	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
RNA_helicase	PF00910.22	gi|529077396|ref|YP_008376399.1|	-	0.12	12.8	0.0	0.2	12.1	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
MukB	PF04310.12	gi|529077396|ref|YP_008376399.1|	-	0.13	12.1	0.0	0.25	11.1	0.0	1.5	1	0	0	1	1	1	0	MukB	N-terminal
AAA_10	PF12846.7	gi|529077396|ref|YP_008376399.1|	-	0.16	10.8	0.2	2.1	7.2	0.0	2.1	2	0	0	2	2	2	0	AAA-like	domain
DLIC	PF05783.11	gi|529077396|ref|YP_008376399.1|	-	0.19	10.5	0.0	0.29	9.9	0.0	1.2	1	0	0	1	1	1	0	Dynein	light	intermediate	chain	(DLIC)
DUF2813	PF11398.8	gi|529077396|ref|YP_008376399.1|	-	0.2	10.9	0.0	0.28	10.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2813)
BPD_transp_2	PF02653.16	gi|529077397|ref|YP_008376400.1|	-	4.2e-50	170.4	41.8	6.2e-50	169.8	41.8	1.1	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
PhoR	PF11808.8	gi|529077397|ref|YP_008376400.1|	-	0.081	13.3	0.5	0.081	13.3	0.5	3.8	3	1	1	4	4	4	0	Phosphate	regulon	sensor	protein	PhoR
DUF1467	PF07330.12	gi|529077397|ref|YP_008376400.1|	-	5.7	6.9	10.3	0.073	13.0	0.6	2.8	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1467)
MMR_HSR1	PF01926.23	gi|529077399|ref|YP_008376402.1|	-	5.3e-19	68.4	0.0	7.8e-19	67.9	0.0	1.3	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.18	gi|529077399|ref|YP_008376402.1|	-	3.2e-13	49.5	0.0	5.3e-12	45.5	0.0	2.0	1	1	0	1	1	1	1	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.27	gi|529077399|ref|YP_008376402.1|	-	1.2e-06	28.2	0.0	0.00018	21.1	0.0	2.2	2	0	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
RsgA_GTPase	PF03193.16	gi|529077399|ref|YP_008376402.1|	-	1.4e-05	25.1	0.0	0.021	14.7	0.0	2.5	3	0	0	3	3	3	2	RsgA	GTPase
MeaB	PF03308.16	gi|529077399|ref|YP_008376402.1|	-	0.0011	18.0	0.0	0.84	8.6	0.0	2.3	2	0	0	2	2	2	2	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
Roc	PF08477.13	gi|529077399|ref|YP_008376402.1|	-	0.0072	16.5	0.0	0.014	15.6	0.0	1.5	1	0	0	1	1	1	1	Ras	of	Complex,	Roc,	domain	of	DAPkinase
Dynamin_N	PF00350.23	gi|529077399|ref|YP_008376402.1|	-	0.0085	16.2	0.1	1	9.4	0.0	2.2	1	1	1	2	2	2	1	Dynamin	family
TIP49	PF06068.13	gi|529077399|ref|YP_008376402.1|	-	0.017	14.3	0.3	0.035	13.3	0.3	1.4	1	0	0	1	1	1	0	TIP49	P-loop	domain
AIG1	PF04548.16	gi|529077399|ref|YP_008376402.1|	-	0.026	13.8	0.0	0.039	13.3	0.0	1.3	1	1	0	1	1	1	0	AIG1	family
ATP_bind_1	PF03029.17	gi|529077399|ref|YP_008376402.1|	-	0.034	13.9	0.0	3.9	7.2	0.0	2.3	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
Ras	PF00071.22	gi|529077399|ref|YP_008376402.1|	-	0.044	13.4	0.0	0.11	12.0	0.0	1.7	2	0	0	2	2	2	0	Ras	family
ABC_tran	PF00005.27	gi|529077399|ref|YP_008376402.1|	-	0.065	13.8	0.0	0.13	12.7	0.0	1.5	1	0	0	1	1	1	0	ABC	transporter
AAA_18	PF13238.6	gi|529077399|ref|YP_008376402.1|	-	0.1	13.2	0.0	0.2	12.2	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|529077399|ref|YP_008376402.1|	-	0.14	11.9	0.0	0.29	10.9	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
SRPRB	PF09439.10	gi|529077399|ref|YP_008376402.1|	-	0.19	11.1	0.0	0.27	10.7	0.0	1.3	1	0	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
RNA_helicase	PF00910.22	gi|529077399|ref|YP_008376402.1|	-	0.2	12.1	0.0	0.34	11.3	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
PfkB	PF00294.24	gi|529077400|ref|YP_008376403.1|	-	3.1e-38	131.8	1.5	5.9e-38	130.9	1.5	1.4	1	1	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.12	gi|529077400|ref|YP_008376403.1|	-	0.0017	17.8	0.0	0.0026	17.2	0.0	1.3	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
Filo_glycop	PF01611.16	gi|529077400|ref|YP_008376403.1|	-	0.15	11.0	0.0	0.21	10.5	0.0	1.1	1	0	0	1	1	1	0	Filovirus	glycoprotein
Phage_RpbA	PF10789.9	gi|529077400|ref|YP_008376403.1|	-	0.2	11.8	0.0	0.37	10.9	0.0	1.4	1	0	0	1	1	1	0	Phage	RNA	polymerase	binding,	RpbA
Trp_oprn_chp	PF09534.10	gi|529077402|ref|YP_008376405.1|	-	0.00014	21.8	1.1	0.00014	21.8	1.1	2.0	2	0	0	2	2	2	1	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
ThrE	PF06738.12	gi|529077402|ref|YP_008376405.1|	-	0.048	13.0	0.6	0.048	13.0	0.6	1.6	2	0	0	2	2	2	0	Putative	threonine/serine	exporter
YdjM	PF04307.14	gi|529077402|ref|YP_008376405.1|	-	3.3	7.0	9.6	44	3.3	9.6	2.0	1	1	0	1	1	1	0	LexA-binding,	inner	membrane-associated	putative	hydrolase
Rep_fac-A_3	PF08661.11	gi|529077403|ref|YP_008376406.1|	-	0.017	15.4	0.1	0.022	15.1	0.1	1.1	1	0	0	1	1	1	0	Replication	factor	A	protein	3
DUF202	PF02656.15	gi|529077403|ref|YP_008376406.1|	-	0.026	15.0	2.2	0.55	10.7	2.2	2.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
DUF2370	PF10176.9	gi|529077403|ref|YP_008376406.1|	-	0.054	13.1	0.0	0.062	12.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2370)
DUF3017	PF11222.8	gi|529077403|ref|YP_008376406.1|	-	0.08	13.2	3.8	0.8	10.0	0.2	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3017)
Methyltrn_RNA_2	PF04013.12	gi|529077404|ref|YP_008376407.1|	-	4e-57	193.1	0.0	4.4e-57	193.0	0.0	1.0	1	0	0	1	1	1	1	Putative	SAM-dependent	RNA	methyltransferase
PIN	PF01850.21	gi|529077406|ref|YP_008376409.1|	-	3.7e-07	30.7	0.0	7.5e-07	29.7	0.0	1.5	1	1	0	1	1	1	1	PIN	domain
VAPB_antitox	PF02697.14	gi|529077407|ref|YP_008376410.1|	-	7.1e-10	39.5	4.5	8.3e-10	39.3	4.5	1.2	1	0	0	1	1	1	1	Putative	antitoxin
Glyco_hydro_10	PF00331.20	gi|529077408|ref|YP_008376411.1|	-	4.3e-99	331.6	0.0	4.8e-99	331.5	0.0	1.0	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	10
Cellulase	PF00150.18	gi|529077408|ref|YP_008376411.1|	-	0.0014	18.1	1.2	0.12	11.7	0.3	2.5	2	1	0	2	2	2	2	Cellulase	(glycosyl	hydrolase	family	5)
AP_endonuc_2	PF01261.24	gi|529077408|ref|YP_008376411.1|	-	0.013	14.9	0.1	0.087	12.3	0.0	2.3	2	1	0	2	2	2	0	Xylose	isomerase-like	TIM	barrel
Epimerase	PF01370.21	gi|529077410|ref|YP_008376413.1|	-	1.1e-39	136.3	0.1	1.3e-39	136.1	0.1	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|529077410|ref|YP_008376413.1|	-	1e-27	97.4	0.0	1.3e-27	97.1	0.0	1.1	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|529077410|ref|YP_008376413.1|	-	1.8e-23	83.1	0.1	2.2e-23	82.8	0.1	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|529077410|ref|YP_008376413.1|	-	8.5e-20	70.9	0.0	2.7e-19	69.3	0.0	1.8	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|529077410|ref|YP_008376413.1|	-	4.2e-15	55.7	0.0	5.2e-14	52.1	0.0	2.4	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|529077410|ref|YP_008376413.1|	-	7.6e-11	41.7	0.0	1.7e-07	30.7	0.0	2.8	2	1	0	2	2	2	2	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|529077410|ref|YP_008376413.1|	-	3.2e-07	30.4	0.1	3.8e-06	26.9	0.0	2.4	3	0	0	3	3	3	1	NAD(P)H-binding
DapB_N	PF01113.20	gi|529077410|ref|YP_008376413.1|	-	0.001	19.2	0.1	0.002	18.2	0.1	1.5	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Ldh_1_N	PF00056.23	gi|529077410|ref|YP_008376413.1|	-	0.013	15.6	0.1	0.025	14.7	0.1	1.4	1	0	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
NmrA	PF05368.13	gi|529077410|ref|YP_008376413.1|	-	0.018	14.6	0.1	0.068	12.7	0.1	1.9	2	0	0	2	2	2	0	NmrA-like	family
Sacchrp_dh_NADP	PF03435.18	gi|529077410|ref|YP_008376413.1|	-	0.019	15.2	0.1	0.043	14.1	0.1	1.7	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
Semialdhyde_dh	PF01118.24	gi|529077410|ref|YP_008376413.1|	-	0.044	14.2	0.0	0.095	13.1	0.0	1.6	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
PSA_CBD	PF18341.1	gi|529077410|ref|YP_008376413.1|	-	0.11	12.5	0.0	0.21	11.6	0.0	1.4	1	0	0	1	1	1	0	PSA	endolysin	C-terminal	cell	wall	binding	domain
Epimerase	PF01370.21	gi|529077411|ref|YP_008376414.1|	-	3.3e-54	183.9	0.1	3.9e-54	183.7	0.1	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|529077411|ref|YP_008376414.1|	-	1.8e-39	136.1	0.0	6e-39	134.4	0.0	1.7	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|529077411|ref|YP_008376414.1|	-	2.8e-26	92.2	0.0	4e-26	91.7	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|529077411|ref|YP_008376414.1|	-	2.5e-16	59.6	0.2	3.2e-16	59.3	0.2	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|529077411|ref|YP_008376414.1|	-	3e-14	52.8	0.0	8.7e-14	51.3	0.0	1.7	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.6	gi|529077411|ref|YP_008376414.1|	-	4.6e-11	42.9	0.2	6.8e-11	42.4	0.2	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|529077411|ref|YP_008376414.1|	-	3.6e-10	39.4	1.1	8e-08	31.8	1.1	2.3	1	1	0	1	1	1	1	Male	sterility	protein
Sacchrp_dh_NADP	PF03435.18	gi|529077411|ref|YP_008376414.1|	-	6.1e-06	26.5	0.2	4.9e-05	23.6	0.1	2.2	1	1	1	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
KR	PF08659.10	gi|529077411|ref|YP_008376414.1|	-	6.2e-05	23.0	0.2	0.00015	21.8	0.2	1.7	1	1	0	1	1	1	1	KR	domain
NmrA	PF05368.13	gi|529077411|ref|YP_008376414.1|	-	0.00062	19.4	0.0	0.0015	18.1	0.0	1.7	1	1	0	1	1	1	1	NmrA-like	family
adh_short_C2	PF13561.6	gi|529077411|ref|YP_008376414.1|	-	0.013	15.1	0.5	0.044	13.3	0.1	1.9	2	0	0	2	2	2	0	Enoyl-(Acyl	carrier	protein)	reductase
Semialdhyde_dh	PF01118.24	gi|529077411|ref|YP_008376414.1|	-	0.045	14.2	0.1	0.16	12.4	0.0	2.0	2	0	0	2	2	2	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
Ldh_1_N	PF00056.23	gi|529077411|ref|YP_008376414.1|	-	0.046	13.8	0.1	0.073	13.2	0.1	1.3	1	0	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
Epimerase	PF01370.21	gi|529077412|ref|YP_008376415.1|	-	1.5e-19	70.4	0.0	3e-19	69.5	0.0	1.5	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|529077412|ref|YP_008376415.1|	-	6.1e-16	58.7	0.6	6.9e-15	55.3	0.6	2.3	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Polysacc_synt_2	PF02719.15	gi|529077412|ref|YP_008376415.1|	-	7.9e-05	21.9	0.1	0.00085	18.5	0.0	2.3	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
3Beta_HSD	PF01073.19	gi|529077412|ref|YP_008376415.1|	-	0.01	14.9	0.1	0.033	13.2	0.1	2.0	2	1	0	2	2	2	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|529077412|ref|YP_008376415.1|	-	0.039	13.0	0.0	1.1	8.3	0.1	2.7	2	1	0	2	2	2	0	RmlD	substrate	binding	domain
MarR_2	PF12802.7	gi|529077414|ref|YP_008376417.1|	-	2.2e-05	24.2	0.0	3.7e-05	23.5	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|529077414|ref|YP_008376417.1|	-	0.0018	18.0	0.0	0.0026	17.5	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|529077414|ref|YP_008376417.1|	-	0.059	13.6	0.0	0.087	13.0	0.0	1.2	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TFIIE_alpha	PF02002.17	gi|529077414|ref|YP_008376417.1|	-	0.094	12.6	0.0	0.13	12.1	0.0	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
NfeD	PF01957.18	gi|529077414|ref|YP_008376417.1|	-	0.15	12.5	0.0	0.19	12.1	0.0	1.2	1	0	0	1	1	1	0	NfeD-like	C-terminal,	partner-binding
ATPase_2	PF01637.18	gi|529077415|ref|YP_008376418.1|	-	3.4e-18	66.4	0.0	7e-17	62.1	0.0	2.1	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
DUF234	PF03008.14	gi|529077415|ref|YP_008376418.1|	-	1.2e-13	51.4	0.0	2.2e-13	50.5	0.0	1.4	1	0	0	1	1	1	1	Archaea	bacterial	proteins	of	unknown	function
AAA_14	PF13173.6	gi|529077415|ref|YP_008376418.1|	-	3.9e-06	26.9	0.0	7.2e-06	26.1	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|529077415|ref|YP_008376418.1|	-	4.1e-06	27.3	0.0	2.4e-05	24.8	0.0	2.2	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|529077415|ref|YP_008376418.1|	-	0.15	12.3	0.0	0.31	11.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DUF234	PF03008.14	gi|529077416|ref|YP_008376419.1|	-	6.5e-09	36.1	0.0	8.8e-09	35.7	0.0	1.2	1	0	0	1	1	1	1	Archaea	bacterial	proteins	of	unknown	function
PIN	PF01850.21	gi|529077417|ref|YP_008376420.1|	-	4.6e-09	36.8	0.1	5.3e-09	36.6	0.1	1.2	1	0	0	1	1	1	1	PIN	domain
PIN_3	PF13470.6	gi|529077417|ref|YP_008376420.1|	-	0.099	13.4	0.6	0.18	12.5	0.6	1.6	1	1	0	1	1	1	0	PIN	domain
MazE_antitoxin	PF04014.18	gi|529077418|ref|YP_008376421.1|	-	3.4e-05	23.7	0.2	4.6e-05	23.2	0.2	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PRiA4_ORF3	PF07929.11	gi|529077419|ref|YP_008376422.1|	-	3.9e-05	23.4	0.0	6.2e-05	22.8	0.0	1.3	1	0	0	1	1	1	1	Plasmid	pRiA4b	ORF-3-like	protein
DZR	PF12773.7	gi|529077419|ref|YP_008376422.1|	-	0.024	14.6	6.7	0.049	13.7	6.7	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-CHY	PF05495.12	gi|529077419|ref|YP_008376422.1|	-	0.061	13.8	2.2	0.1	13.1	2.2	1.4	1	0	0	1	1	1	0	CHY	zinc	finger
zf-B_box	PF00643.24	gi|529077419|ref|YP_008376422.1|	-	0.52	10.5	5.5	2.4	8.4	5.5	2.0	1	1	0	1	1	1	0	B-box	zinc	finger
TF_Zn_Ribbon	PF08271.12	gi|529077419|ref|YP_008376422.1|	-	1.7	8.2	6.8	20	4.8	7.3	2.4	1	1	1	2	2	2	0	TFIIB	zinc-binding
OrfB_IS605	PF01385.19	gi|529077420|ref|YP_008376423.1|	-	2e-33	115.2	0.6	4e-33	114.2	0.6	1.5	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|529077420|ref|YP_008376423.1|	-	7.9e-20	70.6	0.8	1.9e-19	69.3	0.3	2.0	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
DUF2408	PF10303.9	gi|529077420|ref|YP_008376423.1|	-	0.028	15.0	0.1	7.8	7.1	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2408)
Prim_Zn_Ribbon	PF08273.12	gi|529077420|ref|YP_008376423.1|	-	8.8	6.7	7.4	0.96	9.8	2.6	2.0	2	0	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
HTH_20	PF12840.7	gi|529077422|ref|YP_008376425.1|	-	9.3e-05	22.4	0.3	9.3e-05	22.4	0.3	2.3	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|529077422|ref|YP_008376425.1|	-	0.00037	20.4	0.0	0.0012	18.7	0.0	1.8	1	0	0	1	1	1	1	HTH	domain
Rrf2	PF02082.20	gi|529077422|ref|YP_008376425.1|	-	0.0042	17.4	0.0	0.008	16.5	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
TrmB	PF01978.19	gi|529077422|ref|YP_008376425.1|	-	0.0058	16.5	0.0	0.011	15.6	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|529077422|ref|YP_008376425.1|	-	0.021	14.4	0.0	0.047	13.3	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
FaeA	PF04703.12	gi|529077422|ref|YP_008376425.1|	-	0.025	14.9	0.0	0.042	14.2	0.0	1.3	1	0	0	1	1	1	0	FaeA-like	protein
HTH_IclR	PF09339.10	gi|529077422|ref|YP_008376425.1|	-	0.038	13.8	0.4	0.25	11.2	0.1	2.3	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
DUF977	PF06163.11	gi|529077422|ref|YP_008376425.1|	-	0.041	13.8	0.1	0.059	13.3	0.1	1.2	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF977)
LexA_DNA_bind	PF01726.16	gi|529077422|ref|YP_008376425.1|	-	0.043	13.6	0.0	0.13	12.1	0.0	1.8	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_27	PF13463.6	gi|529077422|ref|YP_008376425.1|	-	0.069	13.7	0.1	0.23	12.0	0.1	1.8	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|529077422|ref|YP_008376425.1|	-	0.12	12.3	0.0	0.19	11.6	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DUF433	PF04255.14	gi|529077423|ref|YP_008376426.1|	-	2.7e-09	36.7	0.1	3.7e-09	36.3	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF433)
DUF4296	PF14129.6	gi|529077423|ref|YP_008376426.1|	-	0.053	14.1	0.0	0.063	13.9	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4296)
Glyco_trans_1_2	PF13524.6	gi|529077423|ref|YP_008376426.1|	-	0.072	13.5	0.7	0.097	13.1	0.7	1.3	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
DUF5615	PF18480.1	gi|529077424|ref|YP_008376427.1|	-	2.2e-07	30.5	1.1	0.018	14.8	0.1	3.1	1	1	3	4	4	4	2	Domain	of	unknown	function	(DUF5615)
PIN_10	PF18478.1	gi|529077424|ref|YP_008376427.1|	-	0.014	15.6	2.6	0.71	10.1	0.7	2.3	1	1	1	2	2	2	0	PIN	like	domain
ARGLU	PF15346.6	gi|529077424|ref|YP_008376427.1|	-	0.024	14.5	0.1	0.033	14.1	0.1	1.2	1	0	0	1	1	1	0	Arginine	and	glutamate-rich	1
Swm2	PF17083.5	gi|529077424|ref|YP_008376427.1|	-	0.044	13.8	0.0	9.5	6.2	0.0	2.1	1	1	1	2	2	2	0	Nucleolar	protein	Swm2
RcsD_ABL	PF16359.5	gi|529077424|ref|YP_008376427.1|	-	0.093	12.9	0.1	72	3.6	0.0	2.8	1	1	0	2	2	2	0	RcsD-ABL	domain
Bombinin	PF05298.11	gi|529077424|ref|YP_008376427.1|	-	0.38	10.4	2.3	8.1	6.1	0.1	3.0	1	1	3	4	4	4	0	Bombinin
OrfB_Zn_ribbon	PF07282.11	gi|529077425|ref|YP_008376428.1|	-	1.5e-21	76.0	1.2	3.3e-21	75.0	1.2	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|529077425|ref|YP_008376428.1|	-	0.00072	19.8	0.0	0.0015	18.7	0.0	1.5	1	0	0	1	1	1	1	Probable	transposase
HypA	PF01155.19	gi|529077425|ref|YP_008376428.1|	-	0.13	12.3	0.1	0.24	11.5	0.1	1.5	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Rubredoxin_2	PF18073.1	gi|529077425|ref|YP_008376428.1|	-	0.89	9.3	13.3	4.1	7.2	0.6	3.5	3	0	0	3	3	3	0	Rubredoxin	metal	binding	domain
RNA_POL_M_15KD	PF02150.16	gi|529077425|ref|YP_008376428.1|	-	3.8	7.5	6.5	1.6	8.7	3.4	2.1	2	1	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zinc_ribbon_2	PF13240.6	gi|529077425|ref|YP_008376428.1|	-	7.6	6.4	10.6	1.3	8.8	3.9	2.7	2	1	1	3	3	3	0	zinc-ribbon	domain
RHH_1	PF01402.21	gi|529077426|ref|YP_008376429.1|	-	0.0026	17.6	0.1	0.013	15.4	0.0	2.1	2	1	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
ParE_toxin	PF05016.15	gi|529077427|ref|YP_008376430.1|	-	4.7e-05	23.9	0.0	5.9e-05	23.6	0.0	1.1	1	0	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
Gp49	PF05973.14	gi|529077427|ref|YP_008376430.1|	-	0.063	13.4	0.0	0.086	13.0	0.0	1.2	1	0	0	1	1	1	0	Phage	derived	protein	Gp49-like	(DUF891)
RHH_1	PF01402.21	gi|529077428|ref|YP_008376431.1|	-	4.1e-09	36.0	0.1	7.7e-09	35.2	0.1	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
Glycos_transf_1	PF00534.20	gi|529077428|ref|YP_008376431.1|	-	1.1e-05	25.0	0.1	4.9e-05	22.9	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
HicB_lk_antitox	PF15919.5	gi|529077428|ref|YP_008376431.1|	-	0.00017	21.7	0.0	0.00031	20.8	0.0	1.4	1	1	0	1	1	1	1	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
Glyco_trans_1_4	PF13692.6	gi|529077428|ref|YP_008376431.1|	-	0.00045	20.7	0.1	0.0013	19.2	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
RHH_8	PF17723.1	gi|529077428|ref|YP_008376431.1|	-	0.027	14.7	0.0	0.06	13.5	0.0	1.5	2	0	0	2	2	2	0	Ribbon-Helix-Helix	transcriptional	regulator	family
RHH_5	PF07878.11	gi|529077428|ref|YP_008376431.1|	-	0.18	11.7	0.2	0.38	10.7	0.2	1.5	1	0	0	1	1	1	0	CopG-like	RHH_1	or	ribbon-helix-helix	domain,	RHH_5
ParE_toxin	PF05016.15	gi|529077429|ref|YP_008376432.1|	-	1.1e-05	26.0	0.6	1.4e-05	25.6	0.6	1.2	1	0	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
HTH_20	PF12840.7	gi|529077430|ref|YP_008376433.1|	-	0.0014	18.6	0.3	0.0026	17.8	0.3	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|529077430|ref|YP_008376433.1|	-	0.0016	18.2	0.1	0.0024	17.7	0.1	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TPR_16	PF13432.6	gi|529077430|ref|YP_008376433.1|	-	0.051	14.2	0.2	0.42	11.3	0.1	2.2	2	0	0	2	2	2	0	Tetratricopeptide	repeat
MarR	PF01047.22	gi|529077430|ref|YP_008376433.1|	-	0.099	12.6	0.0	0.16	11.9	0.0	1.3	1	0	0	1	1	1	0	MarR	family
DUF2630	PF10944.8	gi|529077431|ref|YP_008376434.1|	-	0.13	12.8	0.1	0.31	11.5	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2630)
AbiEii	PF08843.11	gi|529077432|ref|YP_008376435.1|	-	0.0059	16.6	0.4	0.0099	15.8	0.3	1.3	1	1	0	1	1	1	1	Nucleotidyl	transferase	AbiEii	toxin,	Type	IV	TA	system
Laminin_G_3	PF13385.6	gi|529077434|ref|YP_008376437.1|	-	4.2e-24	85.4	0.1	9.2e-24	84.3	0.1	1.6	1	0	0	1	1	1	1	Concanavalin	A-like	lectin/glucanases	superfamily
STT3	PF02516.14	gi|529077434|ref|YP_008376437.1|	-	3.6e-09	36.1	3.5	5.3e-09	35.5	3.5	1.2	1	0	0	1	1	1	1	Oligosaccharyl	transferase	STT3	subunit
PMT	PF02366.18	gi|529077434|ref|YP_008376437.1|	-	0.0043	16.7	4.0	0.0043	16.7	4.0	2.5	2	0	0	2	2	2	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
Sulfatase	PF00884.23	gi|529077435|ref|YP_008376438.1|	-	1.6e-36	126.3	0.9	2.2e-36	125.8	0.9	1.2	1	0	0	1	1	1	1	Sulfatase
DUF4976	PF16347.5	gi|529077435|ref|YP_008376438.1|	-	7e-06	26.2	0.1	2.1e-05	24.7	0.1	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4976)
Phosphodiest	PF01663.22	gi|529077435|ref|YP_008376438.1|	-	0.00011	21.9	8.7	0.00012	21.9	5.3	2.4	2	1	0	2	2	2	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Sulfatase_C	PF14707.6	gi|529077435|ref|YP_008376438.1|	-	0.016	15.9	0.1	0.044	14.5	0.1	1.7	1	0	0	1	1	1	0	C-terminal	region	of	aryl-sulfatase
DUF4994	PF16385.5	gi|529077435|ref|YP_008376438.1|	-	0.036	14.0	0.0	0.24	11.4	0.0	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function
Metalloenzyme	PF01676.18	gi|529077435|ref|YP_008376438.1|	-	0.061	12.7	0.0	0.15	11.4	0.1	1.7	2	0	0	2	2	2	0	Metalloenzyme	superfamily
ABC_tran_CTD	PF16326.5	gi|529077435|ref|YP_008376438.1|	-	0.62	10.3	3.2	0.45	10.8	0.2	2.3	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
Phosphodiest	PF01663.22	gi|529077436|ref|YP_008376439.1|	-	1.4e-44	153.1	0.1	2.3e-44	152.5	0.1	1.3	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Metalloenzyme	PF01676.18	gi|529077436|ref|YP_008376439.1|	-	0.17	11.2	0.0	0.28	10.5	0.0	1.2	1	0	0	1	1	1	0	Metalloenzyme	superfamily
UPF0236	PF06782.11	gi|529077437|ref|YP_008376440.1|	-	2.3e-06	26.5	0.0	0.00018	20.3	0.0	2.2	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|529077437|ref|YP_008376440.1|	-	0.0028	16.6	0.3	2.8	6.7	0.1	2.8	2	2	0	2	2	2	2	Transposase,	Mutator	family
DDE_Tnp_IS66	PF03050.14	gi|529077437|ref|YP_008376440.1|	-	0.0032	17.0	0.1	0.0046	16.5	0.1	1.2	1	0	0	1	1	1	1	Transposase	IS66	family
Wzy_C	PF04932.15	gi|529077438|ref|YP_008376441.1|	-	4.6e-06	26.4	12.0	4.6e-06	26.4	12.0	4.1	3	2	0	3	3	3	1	O-Antigen	ligase
Sulfatase	PF00884.23	gi|529077440|ref|YP_008376443.1|	-	1.9e-45	155.6	0.6	2.6e-45	155.2	0.6	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|529077440|ref|YP_008376443.1|	-	7.7e-10	38.9	4.6	2.1e-06	27.6	0.1	2.8	3	1	0	3	3	3	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Metalloenzyme	PF01676.18	gi|529077440|ref|YP_008376443.1|	-	0.016	14.6	0.2	0.025	13.9	0.2	1.3	1	0	0	1	1	1	0	Metalloenzyme	superfamily
DUF229	PF02995.17	gi|529077440|ref|YP_008376443.1|	-	0.025	13.2	0.3	0.049	12.2	0.2	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF229)
DUF3450	PF11932.8	gi|529077440|ref|YP_008376443.1|	-	0.051	12.9	0.8	0.46	9.7	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
Spore_III_AB	PF09548.10	gi|529077440|ref|YP_008376443.1|	-	0.15	12.1	0.0	0.3	11.2	0.0	1.4	1	0	0	1	1	1	0	Stage	III	sporulation	protein	AB	(spore_III_AB)
NeuB	PF03102.14	gi|529077441|ref|YP_008376444.1|	-	3.1e-73	246.2	0.0	3.7e-73	245.9	0.0	1.1	1	0	0	1	1	1	1	NeuB	family
SAF	PF08666.12	gi|529077441|ref|YP_008376444.1|	-	2.2e-09	37.8	0.1	4.4e-09	36.8	0.1	1.6	1	0	0	1	1	1	1	SAF	domain
ChapFlgA	PF13144.6	gi|529077441|ref|YP_008376444.1|	-	0.023	14.7	0.1	0.075	13.1	0.0	1.9	2	0	0	2	2	2	0	Chaperone	for	flagella	basal	body	P-ring	formation
CTP_transf_3	PF02348.19	gi|529077442|ref|YP_008376445.1|	-	1.8e-21	77.1	0.0	6.2e-21	75.3	0.0	1.9	2	0	0	2	2	2	1	Cytidylyltransferase
Glyco_tran_28_C	PF04101.16	gi|529077442|ref|YP_008376445.1|	-	2.1e-06	27.8	0.0	3.9e-06	27.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	family	28	C-terminal	domain
Epimerase_2	PF02350.19	gi|529077442|ref|YP_008376445.1|	-	1.5e-05	24.0	0.1	2.8e-05	23.1	0.1	1.4	1	0	0	1	1	1	1	UDP-N-acetylglucosamine	2-epimerase
NTP_transf_3	PF12804.7	gi|529077442|ref|YP_008376445.1|	-	0.0092	16.3	0.0	0.022	15.1	0.0	1.7	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
ABC_tran	PF00005.27	gi|529077443|ref|YP_008376446.1|	-	1.2e-32	113.3	0.0	2.5e-32	112.3	0.0	1.6	1	0	0	1	1	1	1	ABC	transporter
ABC_membrane	PF00664.23	gi|529077443|ref|YP_008376446.1|	-	5.8e-09	36.0	12.7	8.3e-09	35.5	12.7	1.1	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
SMC_N	PF02463.19	gi|529077443|ref|YP_008376446.1|	-	1.5e-05	24.6	3.2	0.00016	21.2	3.2	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|529077443|ref|YP_008376446.1|	-	0.00094	19.1	0.0	0.0023	17.9	0.0	1.6	1	0	0	1	1	1	1	RsgA	GTPase
AAA_29	PF13555.6	gi|529077443|ref|YP_008376446.1|	-	0.0065	16.2	0.0	0.013	15.2	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|529077443|ref|YP_008376446.1|	-	0.011	16.0	0.3	0.25	11.6	0.3	2.5	1	1	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|529077443|ref|YP_008376446.1|	-	0.034	13.4	0.0	0.11	11.8	0.0	1.8	2	0	0	2	2	2	0	Zeta	toxin
AAA_16	PF13191.6	gi|529077443|ref|YP_008376446.1|	-	0.051	14.0	1.1	0.11	12.8	0.1	2.2	2	1	0	2	2	1	0	AAA	ATPase	domain
AAA_23	PF13476.6	gi|529077443|ref|YP_008376446.1|	-	0.054	14.0	0.8	0.14	12.6	0.7	1.8	1	1	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.15	gi|529077443|ref|YP_008376446.1|	-	0.056	13.4	0.2	6.3	6.7	0.2	2.3	2	0	0	2	2	2	0	NTPase
MMR_HSR1	PF01926.23	gi|529077443|ref|YP_008376446.1|	-	0.069	13.2	0.1	0.2	11.8	0.1	1.9	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
RNA_helicase	PF00910.22	gi|529077443|ref|YP_008376446.1|	-	0.093	13.1	0.0	0.34	11.3	0.0	2.0	2	0	0	2	2	1	0	RNA	helicase
ABC_ATPase	PF09818.9	gi|529077443|ref|YP_008376446.1|	-	0.11	11.2	0.1	0.38	9.5	0.0	1.8	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
PRK	PF00485.18	gi|529077443|ref|YP_008376446.1|	-	0.12	12.1	0.1	0.31	10.8	0.0	1.7	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_30	PF13604.6	gi|529077443|ref|YP_008376446.1|	-	0.12	12.1	0.1	1.7	8.3	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_25	PF13481.6	gi|529077443|ref|YP_008376446.1|	-	0.26	10.8	0.5	1.5	8.3	0.5	2.1	1	1	0	1	1	1	0	AAA	domain
Reticulon	PF02453.17	gi|529077443|ref|YP_008376446.1|	-	1.2	9.1	7.8	0.09	12.7	2.7	1.7	2	0	0	2	2	2	0	Reticulon
Pox_EPC_I2-L1	PF12575.8	gi|529077443|ref|YP_008376446.1|	-	3	8.1	5.1	2.4	8.5	0.4	2.5	2	0	0	2	2	2	0	Poxvirus	entry	protein	complex	L1	and	I2
Cdc6_C	PF09079.11	gi|529077444|ref|YP_008376447.1|	-	7.1e-18	64.4	2.1	2.3e-16	59.5	0.0	2.7	3	0	0	3	3	3	1	CDC6,	C	terminal	winged	helix	domain
AAA_16	PF13191.6	gi|529077444|ref|YP_008376447.1|	-	3.9e-14	53.4	0.9	1.1e-13	52.0	0.0	2.0	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|529077444|ref|YP_008376447.1|	-	1.4e-10	41.6	0.1	3.6e-10	40.2	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.29	gi|529077444|ref|YP_008376447.1|	-	5.4e-06	26.9	0.1	1.8e-05	25.2	0.0	1.9	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NACHT	PF05729.12	gi|529077444|ref|YP_008376447.1|	-	1.5e-05	24.9	0.0	2.5e-05	24.3	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
AAA_30	PF13604.6	gi|529077444|ref|YP_008376447.1|	-	0.00027	20.7	0.5	0.0007	19.4	0.1	1.8	2	0	0	2	2	2	1	AAA	domain
TniB	PF05621.11	gi|529077444|ref|YP_008376447.1|	-	0.00061	19.2	0.0	0.0029	17.1	0.0	1.8	2	0	0	2	2	2	1	Bacterial	TniB	protein
Sigma54_activat	PF00158.26	gi|529077444|ref|YP_008376447.1|	-	0.00075	19.2	0.1	0.0026	17.5	0.0	1.9	2	0	0	2	2	2	1	Sigma-54	interaction	domain
KAP_NTPase	PF07693.14	gi|529077444|ref|YP_008376447.1|	-	0.0025	17.1	0.5	0.19	10.9	0.0	2.4	1	1	1	2	2	2	1	KAP	family	P-loop	domain
DUF2791	PF10923.8	gi|529077444|ref|YP_008376447.1|	-	0.0026	16.7	0.0	0.0045	15.9	0.0	1.4	1	0	0	1	1	1	1	P-loop	Domain	of	unknown	function	(DUF2791)
AAA_2	PF07724.14	gi|529077444|ref|YP_008376447.1|	-	0.0045	17.1	0.0	0.011	15.9	0.0	1.6	2	0	0	2	2	2	1	AAA	domain	(Cdc48	subfamily)
NB-ARC	PF00931.22	gi|529077444|ref|YP_008376447.1|	-	0.009	15.2	0.0	0.019	14.1	0.0	1.5	1	0	0	1	1	1	1	NB-ARC	domain
ATPase_2	PF01637.18	gi|529077444|ref|YP_008376447.1|	-	0.012	15.5	0.0	0.027	14.4	0.0	1.5	1	1	1	2	2	2	0	ATPase	domain	predominantly	from	Archaea
AAA_32	PF13654.6	gi|529077444|ref|YP_008376447.1|	-	0.022	13.6	0.7	0.63	8.8	0.4	2.2	2	0	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|529077444|ref|YP_008376447.1|	-	0.039	14.5	0.0	0.064	13.8	0.0	1.7	1	1	0	1	1	1	0	ABC	transporter
PhoH	PF02562.16	gi|529077444|ref|YP_008376447.1|	-	0.076	12.4	0.1	0.35	10.3	0.0	2.0	3	0	0	3	3	3	0	PhoH-like	protein
DUF2075	PF09848.9	gi|529077444|ref|YP_008376447.1|	-	0.076	12.2	0.0	0.17	11.1	0.0	1.7	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
RNA_helicase	PF00910.22	gi|529077444|ref|YP_008376447.1|	-	0.17	12.3	0.0	0.38	11.1	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
AAA_7	PF12775.7	gi|529077444|ref|YP_008376447.1|	-	0.23	11.0	0.0	0.4	10.2	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
Glyco_transf_4	PF13439.6	gi|529077445|ref|YP_008376448.1|	-	9.6e-31	107.1	1.2	1.6e-30	106.3	1.2	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_4	PF13692.6	gi|529077445|ref|YP_008376448.1|	-	3.8e-27	95.3	0.1	6.3e-27	94.6	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|529077445|ref|YP_008376448.1|	-	1.4e-24	86.5	0.0	2.2e-24	85.9	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|529077445|ref|YP_008376448.1|	-	9.8e-23	81.3	2.9	9.8e-23	81.3	2.9	1.9	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_4_2	PF13477.6	gi|529077445|ref|YP_008376448.1|	-	4.2e-06	26.8	0.0	6.7e-06	26.2	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
Glycos_transf_N	PF04413.16	gi|529077445|ref|YP_008376448.1|	-	0.0034	17.1	0.0	0.0061	16.2	0.0	1.3	1	0	0	1	1	1	1	3-Deoxy-D-manno-octulosonic-acid	transferase	(kdotransferase)
Glyco_trans_1_2	PF13524.6	gi|529077445|ref|YP_008376448.1|	-	0.17	12.3	0.0	0.34	11.3	0.0	1.5	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
DUF433	PF04255.14	gi|529077446|ref|YP_008376449.1|	-	5.2e-11	42.2	0.3	7.8e-11	41.7	0.3	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF433)
DUF5615	PF18480.1	gi|529077447|ref|YP_008376450.1|	-	2.1e-14	53.0	0.0	2.8e-14	52.6	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5615)
PIN_10	PF18478.1	gi|529077447|ref|YP_008376450.1|	-	0.00018	21.7	0.0	0.00024	21.2	0.0	1.2	1	0	0	1	1	1	1	PIN	like	domain
HTH_IclR	PF09339.10	gi|529077448|ref|YP_008376451.1|	-	4.3e-09	36.0	0.9	9.4e-05	22.1	0.2	3.4	3	0	0	3	3	3	2	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|529077448|ref|YP_008376451.1|	-	1.8e-07	30.9	0.0	0.01	15.7	0.0	2.3	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|529077448|ref|YP_008376451.1|	-	2.5e-05	24.1	0.0	0.014	15.3	0.0	2.3	2	0	0	2	2	2	2	HTH	domain
HTH_20	PF12840.7	gi|529077448|ref|YP_008376451.1|	-	0.00022	21.2	0.2	0.01	15.9	0.1	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|529077448|ref|YP_008376451.1|	-	0.00048	20.0	0.1	0.024	14.5	0.1	2.3	2	0	0	2	2	2	1	MarR	family
FUR	PF01475.19	gi|529077448|ref|YP_008376451.1|	-	0.00052	20.1	0.0	0.0024	18.0	0.0	1.9	2	0	0	2	2	2	1	Ferric	uptake	regulator	family
HTH_27	PF13463.6	gi|529077448|ref|YP_008376451.1|	-	0.00064	20.2	0.1	0.015	15.8	0.0	2.3	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|529077448|ref|YP_008376451.1|	-	0.0015	18.3	0.0	0.013	15.4	0.0	2.1	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
TetR_N	PF00440.23	gi|529077448|ref|YP_008376451.1|	-	0.002	17.9	0.2	0.1	12.4	0.1	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	tetR	family
Fe_dep_repress	PF01325.19	gi|529077448|ref|YP_008376451.1|	-	0.0024	18.0	0.0	0.83	9.9	0.0	2.4	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_24	PF13412.6	gi|529077448|ref|YP_008376451.1|	-	0.0042	16.6	0.0	0.032	13.8	0.0	2.1	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_17	PF12728.7	gi|529077448|ref|YP_008376451.1|	-	0.0046	17.1	0.1	3.2	8.0	0.0	2.3	2	0	0	2	2	2	2	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|529077448|ref|YP_008376451.1|	-	0.01	16.2	0.0	1	9.8	0.0	2.2	2	0	0	2	2	2	0	Transcriptional	regulator
HTH_23	PF13384.6	gi|529077448|ref|YP_008376451.1|	-	0.013	15.3	0.0	2.7	7.9	0.0	2.2	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_29	PF13551.6	gi|529077448|ref|YP_008376451.1|	-	0.026	14.5	0.0	0.78	9.8	0.0	2.4	2	1	0	2	2	2	0	Winged	helix-turn	helix
PadR	PF03551.14	gi|529077448|ref|YP_008376451.1|	-	0.049	13.6	0.0	0.87	9.6	0.0	2.4	2	0	0	2	2	2	0	Transcriptional	regulator	PadR-like	family
MarR	PF01047.22	gi|529077448|ref|YP_008376451.1|	-	0.049	13.6	0.0	0.27	11.2	0.0	2.0	2	0	0	2	2	2	0	MarR	family
OrfB_IS605	PF01385.19	gi|529077450|ref|YP_008376453.1|	-	1.1e-27	96.6	1.0	2.2e-27	95.6	1.0	1.5	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|529077450|ref|YP_008376453.1|	-	8.3e-15	54.5	0.0	1.5e-14	53.6	0.0	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Ephrin_rec_like	PF07699.13	gi|529077450|ref|YP_008376453.1|	-	0.013	15.2	0.1	0.032	14.0	0.1	1.6	1	0	0	1	1	1	0	Putative	ephrin-receptor	like
Complex1_LYR_1	PF13232.6	gi|529077450|ref|YP_008376453.1|	-	0.048	14.3	0.1	0.16	12.6	0.1	1.9	1	0	0	1	1	1	0	Complex1_LYR-like
C1_2	PF03107.16	gi|529077450|ref|YP_008376453.1|	-	0.14	12.5	0.1	0.28	11.5	0.1	1.5	1	0	0	1	1	1	0	C1	domain
C1_1	PF00130.22	gi|529077450|ref|YP_008376453.1|	-	0.16	11.9	0.1	0.36	10.8	0.1	1.5	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
PIN	PF01850.21	gi|529077451|ref|YP_008376454.1|	-	6.1e-08	33.2	0.0	8.3e-08	32.8	0.0	1.2	1	0	0	1	1	1	1	PIN	domain
VAPB_antitox	PF02697.14	gi|529077452|ref|YP_008376455.1|	-	8.3e-08	32.9	1.0	1e-07	32.6	1.0	1.3	1	1	0	1	1	1	1	Putative	antitoxin
MEF2_binding	PF09047.10	gi|529077452|ref|YP_008376455.1|	-	0.068	13.0	0.3	0.11	12.4	0.3	1.3	1	0	0	1	1	1	0	MEF2	binding
HTH_IclR	PF09339.10	gi|529077453|ref|YP_008376456.1|	-	0.015	15.0	0.0	0.033	14.0	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_28	PF13518.6	gi|529077453|ref|YP_008376456.1|	-	0.034	14.3	0.0	0.2	11.8	0.0	2.1	2	1	1	3	3	3	0	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|529077453|ref|YP_008376456.1|	-	0.13	12.3	0.0	0.26	11.3	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
PIN_4	PF13638.6	gi|529077454|ref|YP_008376457.1|	-	0.0033	17.7	0.0	0.013	15.8	0.0	1.8	1	1	0	1	1	1	1	PIN	domain
RtcB	PF01139.17	gi|529077455|ref|YP_008376458.1|	-	3.7e-56	191.1	0.0	3.3e-29	102.3	0.0	2.4	2	1	0	2	2	2	2	tRNA-splicing	ligase	RtcB
Lzipper-MIP1	PF14389.6	gi|529077456|ref|YP_008376459.1|	-	0.053	13.8	0.2	0.063	13.6	0.2	1.3	1	1	0	1	1	1	0	Leucine-zipper	of	ternary	complex	factor	MIP1
DUF433	PF04255.14	gi|529077457|ref|YP_008376460.1|	-	3.2e-14	52.5	0.2	1.1e-13	50.8	0.1	2.0	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF433)
C6_DPF	PF10170.9	gi|529077457|ref|YP_008376460.1|	-	0.0033	17.8	0.0	0.0056	17.0	0.0	1.4	1	0	0	1	1	1	1	Cysteine-rich	domain
zf-ribbon_3	PF13248.6	gi|529077457|ref|YP_008376460.1|	-	0.015	14.7	1.1	1.3	8.5	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Ribosomal_L32p	PF01783.23	gi|529077457|ref|YP_008376460.1|	-	0.029	14.6	1.9	3.3	8.1	0.5	2.9	3	0	0	3	3	3	0	Ribosomal	L32p	protein	family
RNA_POL_M_15KD	PF02150.16	gi|529077457|ref|YP_008376460.1|	-	0.052	13.4	0.2	0.11	12.4	0.2	1.5	1	0	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
DZR	PF12773.7	gi|529077457|ref|YP_008376460.1|	-	0.079	13.0	0.2	0.13	12.3	0.2	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
Prok-RING_1	PF14446.6	gi|529077457|ref|YP_008376460.1|	-	0.092	12.7	0.3	0.15	12.0	0.3	1.3	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
DUF647	PF04884.14	gi|529077457|ref|YP_008376460.1|	-	0.11	12.1	0.0	0.15	11.7	0.0	1.1	1	0	0	1	1	1	0	Vitamin	B6	photo-protection	and	homoeostasis
zf-C4_Topoisom	PF01396.19	gi|529077457|ref|YP_008376460.1|	-	0.11	12.2	2.5	0.45	10.3	0.3	2.2	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Zn-ribbon_8	PF09723.10	gi|529077457|ref|YP_008376460.1|	-	0.34	11.1	2.7	11	6.3	0.4	2.3	1	1	1	2	2	2	0	Zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|529077457|ref|YP_008376460.1|	-	0.35	10.9	1.9	4.6	7.3	1.9	2.3	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|529077458|ref|YP_008376461.1|	-	4.7e-08	33.0	2.6	0.00041	20.4	0.1	3.1	3	0	0	3	3	3	1	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|529077458|ref|YP_008376461.1|	-	3.2e-06	27.0	2.6	0.04	13.8	0.5	2.1	2	0	0	2	2	2	2	Putative	transposase	DNA-binding	domain
DZR	PF12773.7	gi|529077458|ref|YP_008376461.1|	-	3e-05	24.0	4.3	0.034	14.2	4.7	2.4	1	1	1	2	2	2	2	Double	zinc	ribbon
zinc-ribbons_6	PF07191.12	gi|529077458|ref|YP_008376461.1|	-	4.6e-05	23.3	2.0	0.0083	16.1	2.5	2.2	1	1	1	2	2	2	2	zinc-ribbons
zinc_ribbon_4	PF13717.6	gi|529077458|ref|YP_008376461.1|	-	9.6e-05	22.2	5.1	0.69	9.9	1.1	3.7	3	1	0	3	3	3	1	zinc-ribbon	domain
IBR	PF01485.21	gi|529077458|ref|YP_008376461.1|	-	0.00024	21.3	2.7	0.022	14.9	0.1	2.4	2	1	0	2	2	2	1	IBR	domain,	a	half	RING-finger	domain
zinc_ribbon_5	PF13719.6	gi|529077458|ref|YP_008376461.1|	-	0.0005	19.8	9.7	0.014	15.1	0.1	3.8	4	0	0	4	4	4	1	zinc-ribbon	domain
HypA	PF01155.19	gi|529077458|ref|YP_008376461.1|	-	0.01	15.8	7.1	0.25	11.4	0.9	2.6	1	1	2	3	3	3	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Trm112p	PF03966.16	gi|529077458|ref|YP_008376461.1|	-	0.012	16.2	3.5	0.53	10.9	0.3	2.9	2	2	0	2	2	2	0	Trm112p-like	protein
zf_Rg	PF17915.1	gi|529077458|ref|YP_008376461.1|	-	0.012	15.0	11.7	0.017	14.5	2.4	2.5	2	1	0	2	2	2	0	Reverse	gyrase	zinc	finger
zf-IS66	PF13005.7	gi|529077458|ref|YP_008376461.1|	-	0.012	16.0	10.9	5.1	7.6	0.0	4.1	2	1	2	4	4	4	0	zinc-finger	binding	domain	of	transposase	IS66
TF_Zn_Ribbon	PF08271.12	gi|529077458|ref|YP_008376461.1|	-	0.015	14.8	14.1	0.052	13.1	2.6	3.0	2	1	0	3	3	3	0	TFIIB	zinc-binding
RNHCP	PF12647.7	gi|529077458|ref|YP_008376461.1|	-	0.024	14.6	6.8	0.23	11.4	7.0	2.2	1	1	1	2	2	2	0	RNHCP	domain
zf-C4_Topoisom	PF01396.19	gi|529077458|ref|YP_008376461.1|	-	0.03	14.1	9.2	0.98	9.3	0.2	3.9	4	0	0	4	4	4	0	Topoisomerase	DNA	binding	C4	zinc	finger
DNA_ligase_ZBD	PF03119.16	gi|529077458|ref|YP_008376461.1|	-	0.036	14.1	10.6	4.6	7.4	0.2	3.6	4	0	0	4	4	3	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zinc_ribbon_9	PF14369.6	gi|529077458|ref|YP_008376461.1|	-	0.047	14.0	13.6	3.2	8.1	6.9	3.6	3	1	1	4	4	4	0	zinc-ribbon
zf-trcl	PF13451.6	gi|529077458|ref|YP_008376461.1|	-	0.079	12.9	8.9	4.7	7.2	0.1	3.7	4	0	0	4	4	4	0	Probable	zinc-ribbon	domain
zf-H2C2_2	PF13465.6	gi|529077458|ref|YP_008376461.1|	-	0.087	13.3	7.0	23	5.6	0.1	3.8	4	0	0	4	4	4	0	Zinc-finger	double	domain
zf-C2H2_4	PF13894.6	gi|529077458|ref|YP_008376461.1|	-	0.17	12.8	5.5	55	5.0	0.0	3.9	4	0	0	4	4	4	0	C2H2-type	zinc	finger
zf-NADH-PPase	PF09297.11	gi|529077458|ref|YP_008376461.1|	-	0.2	11.4	9.8	5.9	6.7	0.0	4.0	4	0	0	4	4	4	0	NADH	pyrophosphatase	zinc	ribbon	domain
DUF2318	PF10080.9	gi|529077458|ref|YP_008376461.1|	-	0.2	11.8	1.7	6	7.1	0.2	2.3	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2318)
A2L_zn_ribbon	PF08792.10	gi|529077458|ref|YP_008376461.1|	-	0.24	11.2	5.7	38	4.2	0.0	3.9	3	1	1	4	4	4	0	A2L	zinc	ribbon	domain
Zn_Tnp_IS91	PF14319.6	gi|529077458|ref|YP_008376461.1|	-	0.3	11.1	4.5	2.3	8.3	0.1	2.7	1	1	2	3	3	3	0	Transposase	zinc-binding	domain
zf_UBZ	PF18439.1	gi|529077458|ref|YP_008376461.1|	-	0.33	10.6	7.9	11	5.8	0.1	3.9	4	0	0	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
DUF1451	PF07295.11	gi|529077458|ref|YP_008376461.1|	-	0.37	10.8	4.5	3.4	7.7	0.0	2.6	2	1	1	3	3	3	0	Zinc-ribbon	containing	domain
Opy2	PF09463.10	gi|529077458|ref|YP_008376461.1|	-	0.38	11.1	13.4	22	5.4	0.3	4.0	4	0	0	4	4	4	0	Opy2	protein
FYDLN_acid	PF09538.10	gi|529077458|ref|YP_008376461.1|	-	0.38	11.5	5.0	15	6.3	0.2	3.2	1	1	3	4	4	4	0	Protein	of	unknown	function	(FYDLN_acid)
Zn_ribbon_SprT	PF17283.2	gi|529077458|ref|YP_008376461.1|	-	0.4	10.6	3.8	1.8	8.5	0.0	2.9	3	0	0	3	3	3	0	SprT-like	zinc	ribbon	domain
TackOD1	PF18551.1	gi|529077458|ref|YP_008376461.1|	-	0.52	9.9	4.1	1.8	8.2	4.1	2.0	1	1	0	1	1	1	0	Thaumarchaeal	output	domain	1
PADR1	PF08063.12	gi|529077458|ref|YP_008376461.1|	-	0.68	9.8	7.1	6.8	6.6	2.1	3.5	3	1	0	3	3	3	0	PADR1	(NUC008)	domain
CpXC	PF14353.6	gi|529077458|ref|YP_008376461.1|	-	0.87	9.6	10.6	18	5.4	0.1	3.9	1	1	3	4	4	4	0	CpXC	protein
Zn_Tnp_IS1	PF03811.13	gi|529077458|ref|YP_008376461.1|	-	0.94	9.3	9.7	7.3	6.4	0.1	3.5	4	0	0	4	4	3	0	InsA	N-terminal	domain
TFIIS_C	PF01096.18	gi|529077458|ref|YP_008376461.1|	-	1.1	9.1	9.0	8.4	6.3	0.4	3.9	4	0	0	4	4	4	0	Transcription	factor	S-II	(TFIIS)
zf-ribbon_3	PF13248.6	gi|529077458|ref|YP_008376461.1|	-	1.2	8.6	15.2	13	5.3	0.4	4.1	3	1	0	3	3	3	0	zinc-ribbon	domain
Prok-RING_1	PF14446.6	gi|529077458|ref|YP_008376461.1|	-	1.3	9.0	13.2	0.25	11.3	3.0	2.7	2	1	0	2	2	2	0	Prokaryotic	RING	finger	family	1
Auto_anti-p27	PF06677.12	gi|529077458|ref|YP_008376461.1|	-	1.8	8.8	11.4	4.3	7.6	0.9	2.6	2	1	1	3	3	3	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
PhnA_Zn_Ribbon	PF08274.12	gi|529077458|ref|YP_008376461.1|	-	2.2	8.3	17.3	0.95	9.5	0.4	3.7	2	1	1	3	3	3	0	PhnA	Zinc-Ribbon
zf-C2H2	PF00096.26	gi|529077458|ref|YP_008376461.1|	-	2.2	8.9	11.1	6.5	7.4	0.1	3.8	4	0	0	4	4	4	0	Zinc	finger,	C2H2	type
DnaJ_CXXCXGXG	PF00684.19	gi|529077458|ref|YP_008376461.1|	-	2.3	8.7	8.2	54	4.2	2.5	2.4	1	1	1	2	2	2	0	DnaJ	central	domain
DUF35_N	PF12172.8	gi|529077458|ref|YP_008376461.1|	-	4.1	7.4	14.3	12	5.9	0.4	4.0	4	0	0	4	4	4	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Zn_Tnp_IS1595	PF12760.7	gi|529077458|ref|YP_008376461.1|	-	4.9	7.2	10.6	9.2	6.3	1.2	3.5	2	2	1	3	3	3	0	Transposase	zinc-ribbon	domain
DUF1272	PF06906.11	gi|529077458|ref|YP_008376461.1|	-	5.3	7.2	12.9	45	4.3	8.7	3.6	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1272)
Anti-TRAP	PF15777.5	gi|529077458|ref|YP_008376461.1|	-	6.8	6.7	13.1	1	9.4	1.3	2.8	1	1	2	3	3	3	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
zf-TFIIB	PF13453.6	gi|529077458|ref|YP_008376461.1|	-	7.7	5.9	13.7	0.58	9.5	2.0	3.4	3	1	1	4	4	3	0	Transcription	factor	zinc-finger
Nudix_N_2	PF14803.6	gi|529077458|ref|YP_008376461.1|	-	7.9	6.5	11.5	43	4.2	0.1	3.8	2	1	2	4	4	4	0	Nudix	N-terminal
GIIM	PF08388.11	gi|529077460|ref|YP_008376463.1|	-	0.12	12.5	0.0	0.16	12.0	0.0	1.2	1	0	0	1	1	1	0	Group	II	intron,	maturase-specific	domain
HTH_5	PF01022.20	gi|529077463|ref|YP_008376466.1|	-	3.8e-08	33.1	0.0	0.00027	20.7	0.0	3.3	3	0	0	3	3	3	2	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|529077463|ref|YP_008376466.1|	-	4.1e-07	29.8	0.0	0.037	13.9	0.0	3.5	3	0	0	3	3	3	2	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|529077463|ref|YP_008376466.1|	-	2.8e-06	27.3	0.3	3.5	7.8	0.0	4.5	4	1	1	5	5	5	3	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|529077463|ref|YP_008376466.1|	-	0.0012	18.6	0.1	0.38	10.6	0.0	3.1	3	0	0	3	3	3	2	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|529077463|ref|YP_008376466.1|	-	0.0038	17.1	0.2	0.032	14.1	0.1	2.5	2	0	0	2	2	2	1	MarR	family
HTH_Crp_2	PF13545.6	gi|529077463|ref|YP_008376466.1|	-	0.012	15.5	0.0	0.27	11.2	0.0	2.7	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
Acetyltransf_4	PF13420.7	gi|529077464|ref|YP_008376467.1|	-	6.6e-33	114.0	0.0	7.6e-33	113.8	0.0	1.0	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|529077464|ref|YP_008376467.1|	-	1.3e-14	54.4	0.0	1.8e-14	53.9	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_3	PF13302.7	gi|529077464|ref|YP_008376467.1|	-	1e-08	35.9	0.1	1.3e-08	35.6	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|529077464|ref|YP_008376467.1|	-	5.6e-06	26.3	0.0	7.9e-06	25.8	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|529077464|ref|YP_008376467.1|	-	0.00012	22.0	0.0	0.00036	20.4	0.0	1.8	1	1	1	2	2	2	1	FR47-like	protein
Acetyltransf_7	PF13508.7	gi|529077464|ref|YP_008376467.1|	-	0.00056	20.3	0.0	0.00083	19.7	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
GNAT_acetyltran	PF12746.7	gi|529077464|ref|YP_008376467.1|	-	0.013	15.0	0.1	0.023	14.3	0.0	1.4	2	0	0	2	2	2	0	GNAT	acetyltransferase
OrfB_Zn_ribbon	PF07282.11	gi|529077465|ref|YP_008376468.1|	-	3.5e-24	84.5	0.7	7.6e-24	83.4	0.7	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|529077465|ref|YP_008376468.1|	-	8.9e-08	32.4	0.0	1.7e-07	31.4	0.0	1.5	1	0	0	1	1	1	1	Probable	transposase
zinc_ribbon_4	PF13717.6	gi|529077465|ref|YP_008376468.1|	-	0.057	13.4	0.3	0.2	11.6	0.0	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.7	gi|529077465|ref|YP_008376468.1|	-	0.14	12.2	1.3	0.38	10.8	1.3	1.8	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-piccolo	PF05715.13	gi|529077465|ref|YP_008376468.1|	-	0.14	12.3	0.9	0.36	11.0	0.9	1.6	1	0	0	1	1	1	0	Piccolo	Zn-finger
Rubredoxin_2	PF18073.1	gi|529077465|ref|YP_008376468.1|	-	0.22	11.3	4.1	1.8	8.4	0.3	2.4	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zinc_ribbon_2	PF13240.6	gi|529077465|ref|YP_008376468.1|	-	0.6	9.9	5.4	2.4	8.0	5.5	2.0	1	1	1	2	2	2	0	zinc-ribbon	domain
Tnp_DNA_bind	PF14706.6	gi|529077466|ref|YP_008376469.1|	-	1.7e-25	88.6	0.0	3.2e-25	87.7	0.0	1.5	1	0	0	1	1	1	1	Transposase	DNA-binding
Dimer_Tnp_Tn5	PF02281.16	gi|529077466|ref|YP_008376469.1|	-	1.1e-07	31.5	0.1	2.7e-07	30.2	0.1	1.8	1	1	0	1	1	1	1	Transposase	Tn5	dimerisation	domain
DDE_Tnp_1	PF01609.21	gi|529077466|ref|YP_008376469.1|	-	1.2e-07	31.6	0.1	2.3e-07	30.7	0.1	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
RNA_ligase	PF09414.10	gi|529077467|ref|YP_008376470.1|	-	0.0004	20.7	0.0	0.00086	19.7	0.0	1.5	1	1	0	1	1	1	1	RNA	ligase
MarR_2	PF12802.7	gi|529077469|ref|YP_008376472.1|	-	1.8e-07	30.9	0.5	4e-07	29.8	0.1	1.7	2	0	0	2	2	2	1	MarR	family
MarR	PF01047.22	gi|529077469|ref|YP_008376472.1|	-	1.5e-05	24.8	0.0	2.3e-05	24.2	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|529077469|ref|YP_008376472.1|	-	0.00037	20.0	0.0	0.00057	19.4	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|529077469|ref|YP_008376472.1|	-	0.00046	20.0	0.1	0.0011	18.8	0.1	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Penicillinase_R	PF03965.16	gi|529077469|ref|YP_008376472.1|	-	0.022	15.1	0.0	0.041	14.2	0.0	1.4	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_IclR	PF09339.10	gi|529077469|ref|YP_008376472.1|	-	0.036	13.9	0.1	0.067	13.0	0.1	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_27	PF13463.6	gi|529077469|ref|YP_008376472.1|	-	0.082	13.4	0.3	0.27	11.8	0.0	2.0	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.6	gi|529077469|ref|YP_008376472.1|	-	0.13	12.2	0.1	0.23	11.5	0.1	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_54	PF18607.1	gi|529077469|ref|YP_008376472.1|	-	0.19	11.8	0.1	0.64	10.1	0.0	1.8	2	0	0	2	2	2	0	ParA	helix	turn	helix	domain
SHOCT	PF09851.9	gi|529077471|ref|YP_008376474.1|	-	4.9e-11	42.0	3.9	7.8e-11	41.4	3.9	1.3	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.11	gi|529077471|ref|YP_008376474.1|	-	0.00029	20.8	2.2	0.00041	20.4	2.2	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
HTH_11	PF08279.12	gi|529077473|ref|YP_008376476.1|	-	0.0056	16.6	0.7	1.8	8.6	0.0	2.6	3	0	0	3	3	3	2	HTH	domain
HTH_24	PF13412.6	gi|529077473|ref|YP_008376476.1|	-	0.0058	16.2	0.9	1.3	8.7	0.0	2.7	3	0	0	3	3	3	2	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|529077473|ref|YP_008376476.1|	-	0.014	15.5	3.2	0.095	12.8	0.1	3.0	3	0	0	3	3	3	0	Helix-turn-helix	domain
TrmB	PF01978.19	gi|529077473|ref|YP_008376476.1|	-	0.087	12.7	0.0	0.19	11.6	0.0	1.6	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_AsnC-type	PF13404.6	gi|529077473|ref|YP_008376476.1|	-	0.25	11.2	7.4	3.9	7.4	0.2	3.4	3	0	0	3	3	3	0	AsnC-type	helix-turn-helix	domain
Prismane	PF03063.20	gi|529077474|ref|YP_008376477.1|	-	5.3e-168	559.9	0.0	6e-168	559.7	0.0	1.0	1	0	0	1	1	1	1	Prismane/CO	dehydrogenase	family
PorB	PF11565.8	gi|529077474|ref|YP_008376477.1|	-	0.013	15.9	0.1	5	7.6	0.0	3.3	3	0	0	3	3	3	0	Alpha	helical	Porin	B
GDP_Man_Dehyd	PF16363.5	gi|529077475|ref|YP_008376478.1|	-	3.3e-65	220.7	0.0	4.2e-65	220.3	0.0	1.1	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|529077475|ref|YP_008376478.1|	-	1.9e-61	207.6	0.1	2.2e-61	207.4	0.1	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|529077475|ref|YP_008376478.1|	-	2.1e-25	89.3	0.0	2.9e-25	88.8	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|529077475|ref|YP_008376478.1|	-	2.8e-19	69.3	0.1	3.4e-19	69.0	0.1	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|529077475|ref|YP_008376478.1|	-	7.3e-16	58.1	0.0	1e-14	54.4	0.0	2.0	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.6	gi|529077475|ref|YP_008376478.1|	-	1.3e-10	41.4	0.9	2.7e-09	37.2	0.9	2.2	1	1	0	1	1	1	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|529077475|ref|YP_008376478.1|	-	1.9e-09	37.1	0.6	3.7e-08	32.9	0.6	2.3	1	1	0	1	1	1	1	Male	sterility	protein
NmrA	PF05368.13	gi|529077475|ref|YP_008376478.1|	-	1.3e-05	24.9	0.2	3.2e-05	23.6	0.2	1.6	1	1	0	1	1	1	1	NmrA-like	family
adh_short	PF00106.25	gi|529077475|ref|YP_008376478.1|	-	4.9e-05	22.9	2.5	0.0012	18.3	1.8	3.1	2	1	0	2	2	2	1	short	chain	dehydrogenase
KR	PF08659.10	gi|529077475|ref|YP_008376478.1|	-	0.00024	21.1	0.1	0.00088	19.2	0.1	1.9	1	1	0	1	1	1	1	KR	domain
UDPG_MGDP_dh_N	PF03721.14	gi|529077475|ref|YP_008376478.1|	-	0.044	13.4	0.1	0.092	12.3	0.1	1.5	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|529077475|ref|YP_008376478.1|	-	0.05	13.5	0.1	0.12	12.3	0.1	1.7	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NTP_transferase	PF00483.23	gi|529077476|ref|YP_008376479.1|	-	6.8e-44	150.3	0.0	7.8e-44	150.1	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|529077476|ref|YP_008376479.1|	-	8.5e-17	62.0	0.0	9.6e-17	61.8	0.0	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|529077476|ref|YP_008376479.1|	-	1.3e-06	28.3	0.0	6.2e-06	26.1	0.0	1.9	2	0	0	2	2	2	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
DP-EP	PF08985.11	gi|529077479|ref|YP_008376482.1|	-	0.053	13.7	0.2	0.082	13.1	0.2	1.4	1	0	0	1	1	1	0	DP-EP	family
Cadherin-like	PF12733.7	gi|529077479|ref|YP_008376482.1|	-	0.34	11.5	4.4	0.34	11.5	3.6	1.5	1	1	0	1	1	1	0	Cadherin-like	beta	sandwich	domain
FctA	PF12892.7	gi|529077479|ref|YP_008376482.1|	-	1.5	9.6	5.7	0.36	11.6	1.8	1.8	1	1	1	2	2	2	0	Spy0128-like	isopeptide	containing	domain
UDPG_MGDP_dh_N	PF03721.14	gi|529077480|ref|YP_008376483.1|	-	4.2e-57	192.7	0.7	1.7e-56	190.8	0.2	1.9	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.19	gi|529077480|ref|YP_008376483.1|	-	2.6e-35	120.5	0.0	7e-35	119.1	0.0	1.8	2	0	0	2	2	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.15	gi|529077480|ref|YP_008376483.1|	-	1.5e-27	96.0	0.1	5.6e-27	94.2	0.0	2.0	2	0	0	2	2	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
3HCDH_N	PF02737.18	gi|529077480|ref|YP_008376483.1|	-	8.1e-06	25.8	0.1	1.7e-05	24.7	0.1	1.6	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|529077480|ref|YP_008376483.1|	-	5e-05	23.3	0.0	0.00012	22.1	0.0	1.8	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
F420_oxidored	PF03807.17	gi|529077480|ref|YP_008376483.1|	-	0.00031	21.2	0.1	0.96	10.1	0.0	4.1	3	1	0	3	3	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
Pyr_redox	PF00070.27	gi|529077480|ref|YP_008376483.1|	-	0.00075	20.0	0.4	0.0038	17.8	0.2	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.14	gi|529077480|ref|YP_008376483.1|	-	0.0017	17.7	0.1	0.0031	16.8	0.1	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.16	gi|529077480|ref|YP_008376483.1|	-	0.0063	16.2	0.0	0.011	15.4	0.0	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
TrkA_N	PF02254.18	gi|529077480|ref|YP_008376483.1|	-	0.023	14.9	1.6	0.31	11.3	0.0	3.0	3	0	0	3	3	3	0	TrkA-N	domain
NAD_binding_2	PF03446.15	gi|529077480|ref|YP_008376483.1|	-	0.053	13.7	0.2	0.34	11.0	0.1	2.4	2	1	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|529077480|ref|YP_008376483.1|	-	0.065	12.5	1.4	0.064	12.5	0.3	1.5	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
2-Hacid_dh_C	PF02826.19	gi|529077480|ref|YP_008376483.1|	-	0.11	11.9	0.1	0.72	9.2	0.0	2.2	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Semialdhyde_dh	PF01118.24	gi|529077480|ref|YP_008376483.1|	-	0.11	12.9	1.0	2.2	8.7	0.1	3.2	3	1	0	3	3	3	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
NAD_binding_11	PF14833.6	gi|529077480|ref|YP_008376483.1|	-	0.18	12.1	1.0	0.49	10.6	0.3	2.1	2	0	0	2	2	2	0	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
DAO	PF01266.24	gi|529077480|ref|YP_008376483.1|	-	1.5	8.3	4.4	7.3	6.1	4.4	2.4	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
DUF433	PF04255.14	gi|529077481|ref|YP_008376484.1|	-	3.2e-13	49.3	0.4	4.6e-13	48.8	0.4	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF433)
DUF5615	PF18480.1	gi|529077482|ref|YP_008376485.1|	-	1.9e-15	56.3	0.3	5.8e-15	54.8	0.2	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF5615)
PIN_10	PF18478.1	gi|529077482|ref|YP_008376485.1|	-	7e-05	23.0	0.2	0.00012	22.2	0.2	1.4	1	0	0	1	1	1	1	PIN	like	domain
Mut7-C	PF01927.16	gi|529077482|ref|YP_008376485.1|	-	0.00023	21.3	0.0	0.00026	21.1	0.0	1.1	1	0	0	1	1	1	1	Mut7-C	RNAse	domain
Thiamine_BP	PF01910.17	gi|529077483|ref|YP_008376486.1|	-	4e-18	65.1	0.7	4.5e-18	64.9	0.7	1.0	1	0	0	1	1	1	1	Thiamine-binding	protein
LacI	PF00356.21	gi|529077483|ref|YP_008376486.1|	-	0.012	15.3	0.2	0.029	14.2	0.0	1.7	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	lacI	family
HalOD1	PF18545.1	gi|529077483|ref|YP_008376486.1|	-	0.017	15.4	1.9	0.028	14.7	0.9	1.9	1	1	1	2	2	2	0	Halobacterial	output	domain	1
MCH	PF02289.16	gi|529077484|ref|YP_008376487.1|	-	7e-112	373.7	0.3	7.8e-112	373.6	0.3	1.0	1	0	0	1	1	1	1	Cyclohydrolase	(MCH)
SLATT_2	PF18183.1	gi|529077484|ref|YP_008376487.1|	-	0.0011	18.8	1.0	0.0019	18.0	1.0	1.3	1	0	0	1	1	1	1	SMODS	and	SLOG-associating	2TM	effector	domain	2
HAD_2	PF13419.6	gi|529077485|ref|YP_008376488.1|	-	6.7e-22	78.4	0.0	9.8e-22	77.9	0.0	1.2	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|529077485|ref|YP_008376488.1|	-	5.3e-14	53.0	0.1	1.4e-13	51.6	0.1	1.6	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|529077485|ref|YP_008376488.1|	-	2e-08	34.2	0.1	2.1e-07	30.9	0.0	2.4	1	1	1	2	2	2	1	HAD-hyrolase-like
HAD	PF12710.7	gi|529077485|ref|YP_008376488.1|	-	7.8e-07	29.7	0.3	9.2e-07	29.4	0.3	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Aldolase_II	PF00596.21	gi|529077487|ref|YP_008376490.1|	-	9.7e-46	156.0	0.0	1.1e-45	155.8	0.0	1.0	1	0	0	1	1	1	1	Class	II	Aldolase	and	Adducin	N-terminal	domain
FGGY_N	PF00370.21	gi|529077488|ref|YP_008376491.1|	-	2e-62	210.9	0.0	3e-62	210.4	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
FGGY_C	PF02782.16	gi|529077488|ref|YP_008376491.1|	-	1.5e-33	116.2	0.0	2.2e-33	115.7	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
BcrAD_BadFG	PF01869.20	gi|529077488|ref|YP_008376491.1|	-	0.0037	16.8	0.0	0.0064	16.0	0.0	1.3	1	0	0	1	1	1	1	BadF/BadG/BcrA/BcrD	ATPase	family
Glyco_hydro_127	PF07944.12	gi|529077489|ref|YP_008376492.1|	-	2.7e-162	540.9	0.0	3.4e-162	540.6	0.0	1.1	1	0	0	1	1	1	1	Beta-L-arabinofuranosidase,	GH127
Glyco_hydro_88	PF07470.13	gi|529077489|ref|YP_008376492.1|	-	0.0073	15.4	0.6	0.042	12.9	0.1	2.2	2	1	0	2	2	2	1	Glycosyl	Hydrolase	Family	88
Imm49	PF15575.6	gi|529077489|ref|YP_008376492.1|	-	0.0092	15.8	0.1	0.024	14.4	0.1	1.6	1	0	0	1	1	1	1	Immunity	protein	49
Alpha-L-AF_C	PF06964.12	gi|529077490|ref|YP_008376493.1|	-	1.8e-30	106.3	1.5	2.8e-30	105.7	1.5	1.3	1	0	0	1	1	1	1	Alpha-L-arabinofuranosidase	C-terminal	domain
Glyco_hydro_97	PF10566.9	gi|529077491|ref|YP_008376494.1|	-	1.1e-70	238.2	1.0	2.2e-70	237.1	1.0	1.5	1	1	0	1	1	1	1	Glycoside	hydrolase	97
GH97_N	PF14508.6	gi|529077491|ref|YP_008376494.1|	-	3.2e-37	128.3	0.0	5e-37	127.6	0.0	1.2	1	0	0	1	1	1	1	Glycosyl-hydrolase	97	N-terminal
GH97_C	PF14509.6	gi|529077491|ref|YP_008376494.1|	-	4e-20	71.8	0.0	6.8e-19	67.9	0.0	2.4	2	0	0	2	2	2	1	Glycosyl-hydrolase	97	C-terminal,	oligomerisation
Arabinose_Isome	PF02610.15	gi|529077492|ref|YP_008376495.1|	-	2.6e-172	573.0	0.0	3.5e-172	572.6	0.0	1.2	1	0	0	1	1	1	1	L-arabinose	isomerase
Arabinose_Iso_C	PF11762.8	gi|529077492|ref|YP_008376495.1|	-	3.6e-50	168.6	0.0	1.3e-49	166.8	0.0	1.9	2	0	0	2	2	2	1	L-arabinose	isomerase	C-terminal	domain
Sipho_Gp37	PF14594.6	gi|529077492|ref|YP_008376495.1|	-	0.076	12.0	0.1	0.12	11.4	0.1	1.3	1	0	0	1	1	1	0	Siphovirus	ReqiPepy6	Gp37-like	protein
PfkB	PF00294.24	gi|529077494|ref|YP_008376497.1|	-	6.2e-59	199.8	0.0	7e-59	199.6	0.0	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
NepR	PF18557.1	gi|529077494|ref|YP_008376497.1|	-	0.035	13.7	0.0	0.07	12.8	0.0	1.5	1	0	0	1	1	1	0	Anti-sigma	factor	NepR
GlcNAc_2-epim	PF07221.11	gi|529077495|ref|YP_008376498.1|	-	3.7e-06	26.4	0.0	3.8e-06	26.4	0.0	1.0	1	0	0	1	1	1	1	N-acylglucosamine	2-epimerase	(GlcNAc	2-epimerase)
GlcNAc_2-epim	PF07221.11	gi|529077496|ref|YP_008376499.1|	-	0.00011	21.5	0.1	0.00012	21.4	0.1	1.0	1	0	0	1	1	1	1	N-acylglucosamine	2-epimerase	(GlcNAc	2-epimerase)
Corona_nucleoca	PF00937.18	gi|529077496|ref|YP_008376499.1|	-	0.17	10.9	0.0	0.18	10.8	0.0	1.0	1	0	0	1	1	1	0	Coronavirus	nucleocapsid	protein
DUF4064	PF13273.6	gi|529077497|ref|YP_008376500.1|	-	0.0012	19.0	3.8	0.18	12.1	2.0	2.0	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF4064)
CPBP	PF02517.16	gi|529077497|ref|YP_008376500.1|	-	0.0031	17.9	0.9	0.0037	17.6	0.9	1.1	1	0	0	1	1	1	1	CPBP	intramembrane	metalloprotease
E1-E2_ATPase	PF00122.20	gi|529077497|ref|YP_008376500.1|	-	0.011	15.3	1.3	0.81	9.2	0.0	2.0	1	1	1	2	2	2	0	E1-E2	ATPase
DUF2371	PF10177.9	gi|529077497|ref|YP_008376500.1|	-	0.011	15.9	1.2	1.1	9.4	1.7	2.1	2	0	0	2	2	2	0	Uncharacterised	conserved	protein	(DUF2371)
DUF4668	PF15701.5	gi|529077497|ref|YP_008376500.1|	-	0.21	11.4	1.6	0.23	11.3	0.5	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4668)
DUF202	PF02656.15	gi|529077497|ref|YP_008376500.1|	-	0.39	11.2	2.7	0.73	10.3	2.7	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
Saf_2TM	PF18303.1	gi|529077497|ref|YP_008376500.1|	-	0.48	10.0	4.5	0.69	9.5	4.4	1.4	1	1	0	1	1	1	0	SAVED-fused	2TM	effector	domain
ABC_tran	PF00005.27	gi|529077498|ref|YP_008376501.1|	-	9.5e-50	168.7	0.0	6.1e-27	94.8	0.0	2.3	2	0	0	2	2	2	2	ABC	transporter
oligo_HPY	PF08352.12	gi|529077498|ref|YP_008376501.1|	-	9.7e-37	125.3	2.3	9.8e-21	74.1	0.1	2.7	2	0	0	2	2	2	2	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|529077498|ref|YP_008376501.1|	-	9.7e-12	45.3	5.1	3.4e-06	27.1	0.8	4.1	3	1	1	4	4	4	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|529077498|ref|YP_008376501.1|	-	1.3e-06	28.0	1.0	0.57	9.6	0.0	3.6	3	1	0	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|529077498|ref|YP_008376501.1|	-	2.1e-06	28.1	4.7	0.11	12.7	0.3	3.9	2	2	0	2	2	2	2	AAA	domain
AAA_29	PF13555.6	gi|529077498|ref|YP_008376501.1|	-	2.4e-05	24.0	0.0	0.23	11.2	0.0	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.6	gi|529077498|ref|YP_008376501.1|	-	7.1e-05	22.5	0.0	0.13	11.8	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
NACHT	PF05729.12	gi|529077498|ref|YP_008376501.1|	-	0.00013	21.9	0.3	0.72	9.7	0.0	2.5	2	0	0	2	2	2	2	NACHT	domain
AAA_16	PF13191.6	gi|529077498|ref|YP_008376501.1|	-	0.00013	22.3	0.0	0.56	10.6	0.0	2.4	2	0	0	2	2	2	2	AAA	ATPase	domain
IstB_IS21	PF01695.17	gi|529077498|ref|YP_008376501.1|	-	0.00018	21.3	0.0	0.42	10.3	0.0	2.7	3	0	0	3	3	2	2	IstB-like	ATP	binding	protein
RNA_helicase	PF00910.22	gi|529077498|ref|YP_008376501.1|	-	0.00054	20.3	0.0	0.87	10.0	0.0	2.7	2	0	0	2	2	2	1	RNA	helicase
AAA_24	PF13479.6	gi|529077498|ref|YP_008376501.1|	-	0.0006	19.6	0.0	0.76	9.5	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
MMR_HSR1	PF01926.23	gi|529077498|ref|YP_008376501.1|	-	0.00062	19.8	0.0	3.8	7.6	0.0	3.7	3	0	0	3	3	3	1	50S	ribosome-binding	GTPase
NB-ARC	PF00931.22	gi|529077498|ref|YP_008376501.1|	-	0.00064	19.0	0.3	0.17	11.0	0.1	2.3	2	0	0	2	2	2	1	NB-ARC	domain
ATPase	PF06745.13	gi|529077498|ref|YP_008376501.1|	-	0.00099	18.5	0.1	0.43	9.9	0.1	2.4	2	0	0	2	2	2	1	KaiC
RsgA_GTPase	PF03193.16	gi|529077498|ref|YP_008376501.1|	-	0.0013	18.7	0.5	0.67	9.8	0.2	2.6	2	1	0	2	2	2	1	RsgA	GTPase
PhoH	PF02562.16	gi|529077498|ref|YP_008376501.1|	-	0.0019	17.7	0.0	1.3	8.4	0.1	2.3	2	0	0	2	2	2	2	PhoH-like	protein
MobB	PF03205.14	gi|529077498|ref|YP_008376501.1|	-	0.0022	17.9	0.0	1.2	9.0	0.0	2.4	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_33	PF13671.6	gi|529077498|ref|YP_008376501.1|	-	0.0025	18.0	0.0	2.9	8.1	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
DUF87	PF01935.17	gi|529077498|ref|YP_008376501.1|	-	0.0062	16.7	0.1	0.042	13.9	0.0	2.2	2	0	0	2	2	2	1	Helicase	HerA,	central	domain
AAA_23	PF13476.6	gi|529077498|ref|YP_008376501.1|	-	0.011	16.3	0.0	2.2	8.7	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
PRK	PF00485.18	gi|529077498|ref|YP_008376501.1|	-	0.011	15.4	0.4	3.9	7.2	0.0	2.4	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_5	PF07728.14	gi|529077498|ref|YP_008376501.1|	-	0.015	15.3	0.7	8	6.5	0.3	2.6	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
Sigma54_activat	PF00158.26	gi|529077498|ref|YP_008376501.1|	-	0.019	14.6	0.1	1.2	8.9	0.0	2.3	2	0	0	2	2	2	0	Sigma-54	interaction	domain
Zeta_toxin	PF06414.12	gi|529077498|ref|YP_008376501.1|	-	0.021	14.1	0.1	3.1	7.0	0.0	2.9	3	0	0	3	3	3	0	Zeta	toxin
AAA_7	PF12775.7	gi|529077498|ref|YP_008376501.1|	-	0.026	14.1	0.1	8.2	5.9	0.0	2.3	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
TsaE	PF02367.17	gi|529077498|ref|YP_008376501.1|	-	0.027	14.4	0.0	1.6	8.7	0.0	2.3	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA	PF00004.29	gi|529077498|ref|YP_008376501.1|	-	0.031	14.7	0.7	9.5	6.7	0.8	2.6	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Roc	PF08477.13	gi|529077498|ref|YP_008376501.1|	-	0.056	13.7	0.1	11	6.3	0.1	2.4	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA_15	PF13175.6	gi|529077498|ref|YP_008376501.1|	-	0.062	13.0	0.5	7.3	6.2	0.0	2.5	3	0	0	3	3	2	0	AAA	ATPase	domain
Pox_A32	PF04665.12	gi|529077498|ref|YP_008376501.1|	-	0.078	12.4	0.1	2.2	7.7	0.0	2.2	2	0	0	2	2	2	0	Poxvirus	A32	protein
Mg_chelatase	PF01078.21	gi|529077498|ref|YP_008376501.1|	-	0.11	11.9	0.0	5.6	6.3	0.0	2.6	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
MeaB	PF03308.16	gi|529077498|ref|YP_008376501.1|	-	0.13	11.2	0.6	0.22	10.5	0.0	1.5	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
Septin	PF00735.18	gi|529077498|ref|YP_008376501.1|	-	0.13	11.5	0.0	15	4.8	0.0	2.2	2	0	0	2	2	2	0	Septin
AAA_30	PF13604.6	gi|529077498|ref|YP_008376501.1|	-	0.21	11.3	0.1	11	5.7	0.1	2.3	2	0	0	2	2	2	0	AAA	domain
ATPase_2	PF01637.18	gi|529077498|ref|YP_008376501.1|	-	0.22	11.4	0.0	8.8	6.2	0.0	2.4	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
ABC_ATPase	PF09818.9	gi|529077498|ref|YP_008376501.1|	-	0.24	10.1	0.4	26	3.4	0.1	3.0	3	0	0	3	3	3	0	Predicted	ATPase	of	the	ABC	class
SbcCD_C	PF13558.6	gi|529077498|ref|YP_008376501.1|	-	2.7	8.3	3.9	39	4.6	0.9	3.4	2	2	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
BPD_transp_1	PF00528.22	gi|529077499|ref|YP_008376502.1|	-	1.3e-21	77.2	17.0	1.3e-21	77.2	17.0	2.0	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DDE_Tnp_1	PF01609.21	gi|529077500|ref|YP_008376503.1|	-	1.4e-08	34.7	0.7	2.8e-08	33.7	0.7	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
ELP6	PF09807.9	gi|529077500|ref|YP_008376503.1|	-	0.23	10.8	0.0	0.35	10.3	0.0	1.2	1	0	0	1	1	1	0	Elongation	complex	protein	6
UPF0236	PF06782.11	gi|529077502|ref|YP_008376505.1|	-	2.3e-06	26.5	0.0	0.00018	20.3	0.0	2.2	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|529077502|ref|YP_008376505.1|	-	0.0028	16.6	0.3	2.8	6.7	0.1	2.8	2	2	0	2	2	2	2	Transposase,	Mutator	family
DDE_Tnp_IS66	PF03050.14	gi|529077502|ref|YP_008376505.1|	-	0.0032	17.0	0.1	0.0046	16.5	0.1	1.2	1	0	0	1	1	1	1	Transposase	IS66	family
SBP_bac_5	PF00496.22	gi|529077503|ref|YP_008376506.1|	-	3.8e-26	91.9	6.3	3.8e-26	91.9	6.3	1.4	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
Glyco_hydro_32N	PF00251.20	gi|529077504|ref|YP_008376507.1|	-	2.9e-76	257.0	0.0	3.7e-76	256.6	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	32	N-terminal	domain
Glyco_hydro_32C	PF08244.12	gi|529077504|ref|YP_008376507.1|	-	4.5e-33	114.5	0.0	7e-33	113.9	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	32	C	terminal
DUF4960	PF16324.5	gi|529077504|ref|YP_008376507.1|	-	1.6e-06	27.9	0.0	0.00038	20.1	0.0	2.3	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4960)
ABC_transp_aux	PF09822.9	gi|529077504|ref|YP_008376507.1|	-	0.0018	17.8	0.0	0.0026	17.3	0.0	1.2	1	0	0	1	1	1	1	ABC-type	uncharacterized	transport	system
Glyco_hydro_42M	PF08532.10	gi|529077504|ref|YP_008376507.1|	-	0.0063	16.0	0.0	0.014	14.9	0.0	1.6	1	0	0	1	1	1	1	Beta-galactosidase	trimerisation	domain
DUF4975	PF16346.5	gi|529077504|ref|YP_008376507.1|	-	0.13	12.3	0.0	0.2	11.7	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4975)
Regulator_TrmB	PF11495.8	gi|529077507|ref|YP_008376510.1|	-	3.1e-33	114.9	0.0	4.6e-33	114.3	0.0	1.3	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.19	gi|529077507|ref|YP_008376510.1|	-	3.5e-17	62.1	0.1	6.7e-17	61.1	0.1	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|529077507|ref|YP_008376510.1|	-	0.00021	21.1	0.0	0.0005	19.9	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|529077507|ref|YP_008376510.1|	-	0.0022	17.5	0.0	0.018	14.6	0.0	2.4	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
UPF0122	PF04297.14	gi|529077507|ref|YP_008376510.1|	-	0.036	14.3	0.0	0.58	10.4	0.0	2.5	2	0	0	2	2	2	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
Rrf2	PF02082.20	gi|529077507|ref|YP_008376510.1|	-	0.099	13.0	0.0	0.23	11.8	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_20	PF12840.7	gi|529077507|ref|YP_008376510.1|	-	0.14	12.2	0.0	0.53	10.4	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_28	PF13518.6	gi|529077507|ref|YP_008376510.1|	-	0.18	11.9	0.0	0.42	10.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Spc7	PF08317.11	gi|529077509|ref|YP_008376512.1|	-	1.5e-07	30.6	68.1	0.00048	19.1	25.9	4.1	2	2	1	3	3	3	3	Spc7	kinetochore	protein
AAA_23	PF13476.6	gi|529077509|ref|YP_008376512.1|	-	1.8e-05	25.4	61.4	8.5	6.8	43.0	4.4	2	1	0	2	2	2	0	AAA	domain
Atg14	PF10186.9	gi|529077509|ref|YP_008376512.1|	-	0.0001	21.5	47.5	0.32	10.0	2.8	4.2	1	1	2	4	4	4	4	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DHR10	PF18595.1	gi|529077509|ref|YP_008376512.1|	-	0.00021	21.3	78.5	0.0014	18.7	11.5	5.0	3	1	1	4	4	4	2	Designed	helical	repeat	protein	10	domain
IFT57	PF10498.9	gi|529077509|ref|YP_008376512.1|	-	0.00025	20.1	13.4	0.00025	20.1	13.4	2.5	2	1	0	2	2	2	1	Intra-flagellar	transport	protein	57
DUF5082	PF16888.5	gi|529077509|ref|YP_008376512.1|	-	0.00025	21.3	48.7	0.04	14.2	11.4	6.0	2	2	4	6	6	6	3	Domain	of	unknown	function	(DUF5082)
Baculo_PEP_C	PF04513.12	gi|529077509|ref|YP_008376512.1|	-	0.0023	18.0	25.7	0.38	10.8	0.2	4.8	2	2	2	4	4	4	3	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF4407	PF14362.6	gi|529077509|ref|YP_008376512.1|	-	0.004	16.6	52.4	0.042	13.2	6.4	3.6	1	1	2	3	3	3	2	Domain	of	unknown	function	(DUF4407)
AAA_15	PF13175.6	gi|529077509|ref|YP_008376512.1|	-	0.0081	15.9	12.4	0.16	11.6	12.4	2.9	1	1	0	1	1	1	1	AAA	ATPase	domain
ADIP	PF11559.8	gi|529077509|ref|YP_008376512.1|	-	0.011	15.8	58.3	0.013	15.6	14.2	5.3	1	1	4	5	5	5	0	Afadin-	and	alpha	-actinin-Binding
NPV_P10	PF05531.12	gi|529077509|ref|YP_008376512.1|	-	0.017	15.6	28.8	1.4	9.4	1.2	6.4	2	2	4	6	6	6	0	Nucleopolyhedrovirus	P10	protein
TMF_DNA_bd	PF12329.8	gi|529077509|ref|YP_008376512.1|	-	0.019	14.9	3.4	0.019	14.9	3.4	7.3	2	2	5	7	7	6	0	TATA	element	modulatory	factor	1	DNA	binding
DivIC	PF04977.15	gi|529077509|ref|YP_008376512.1|	-	0.022	14.5	69.4	0.029	14.1	0.8	8.9	3	2	6	9	9	9	0	Septum	formation	initiator
DUF4201	PF13870.6	gi|529077509|ref|YP_008376512.1|	-	0.052	13.3	49.6	0.053	13.2	1.9	4.6	2	2	1	4	4	4	0	Domain	of	unknown	function	(DUF4201)
DUF1664	PF07889.12	gi|529077509|ref|YP_008376512.1|	-	0.079	13.0	38.3	0.35	10.9	4.8	5.4	2	2	1	5	5	5	0	Protein	of	unknown	function	(DUF1664)
Lectin_N	PF03954.14	gi|529077509|ref|YP_008376512.1|	-	0.11	12.2	0.2	0.11	12.2	0.2	4.6	3	2	1	4	4	4	0	Hepatic	lectin,	N-terminal	domain
HemX	PF04375.14	gi|529077509|ref|YP_008376512.1|	-	0.14	11.4	40.7	0.65	9.2	8.6	4.3	2	2	2	4	4	4	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Fez1	PF06818.15	gi|529077509|ref|YP_008376512.1|	-	0.38	11.2	61.2	1.1	9.7	12.0	4.3	1	1	3	4	4	4	0	Fez1
DUF3584	PF12128.8	gi|529077509|ref|YP_008376512.1|	-	0.44	8.0	61.5	2	5.8	25.7	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3584)
AAA_13	PF13166.6	gi|529077509|ref|YP_008376512.1|	-	0.51	8.9	46.8	17	3.9	26.5	2.8	1	1	1	2	2	2	0	AAA	domain
HMMR_N	PF15905.5	gi|529077509|ref|YP_008376512.1|	-	0.64	9.4	64.4	0.39	10.1	23.1	3.8	2	2	2	4	4	4	0	Hyaluronan	mediated	motility	receptor	N-terminal
DUF4200	PF13863.6	gi|529077509|ref|YP_008376512.1|	-	0.89	10.0	65.7	1.7	9.0	18.4	6.3	2	2	4	6	6	6	0	Domain	of	unknown	function	(DUF4200)
Phage_int_SAM_1	PF02899.17	gi|529077509|ref|YP_008376512.1|	-	1	9.7	5.7	5.8	7.3	0.1	3.4	3	0	0	3	3	2	0	Phage	integrase,	N-terminal	SAM-like	domain
FlaC_arch	PF05377.11	gi|529077509|ref|YP_008376512.1|	-	1.1	9.7	44.7	2	8.9	4.8	8.2	4	2	4	8	8	7	0	Flagella	accessory	protein	C	(FlaC)
DUF4763	PF15960.5	gi|529077509|ref|YP_008376512.1|	-	1.4	8.2	45.2	0.19	11.0	7.2	3.9	2	2	1	3	3	3	0	Domain	of	unknown	function	(DUF4763)
FliJ	PF02050.16	gi|529077509|ref|YP_008376512.1|	-	1.4	9.1	48.8	1.8	8.8	12.4	5.1	2	2	2	4	4	4	0	Flagellar	FliJ	protein
CENP-F_leu_zip	PF10473.9	gi|529077509|ref|YP_008376512.1|	-	1.8	8.6	75.2	0.067	13.2	22.9	5.6	2	2	2	4	4	4	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
ERM	PF00769.19	gi|529077509|ref|YP_008376512.1|	-	2.4	7.9	75.1	1	9.1	34.0	3.5	1	1	2	3	3	3	0	Ezrin/radixin/moesin	family
HIP1_clath_bdg	PF16515.5	gi|529077509|ref|YP_008376512.1|	-	2.6	8.7	61.8	2.3	8.9	13.6	5.8	2	2	3	6	6	6	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
TPR_MLP1_2	PF07926.12	gi|529077509|ref|YP_008376512.1|	-	2.6	8.1	72.7	0.11	12.6	22.1	5.7	2	2	3	5	5	5	0	TPR/MLP1/MLP2-like	protein
Uso1_p115_C	PF04871.13	gi|529077509|ref|YP_008376512.1|	-	2.7	8.4	62.6	0.24	11.8	5.3	5.3	1	1	3	4	4	4	0	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
Golgin_A5	PF09787.9	gi|529077509|ref|YP_008376512.1|	-	3.5	7.0	69.1	0.49	9.8	13.3	3.5	1	1	2	3	3	3	0	Golgin	subfamily	A	member	5
GAS	PF13851.6	gi|529077509|ref|YP_008376512.1|	-	6.6	6.0	57.6	13	5.1	7.7	4.6	2	2	3	5	5	5	0	Growth-arrest	specific	micro-tubule	binding
Filament	PF00038.21	gi|529077509|ref|YP_008376512.1|	-	8.7	5.8	66.6	0.42	10.1	9.3	4.4	1	1	1	3	3	2	0	Intermediate	filament	protein
PfkB	PF00294.24	gi|529077510|ref|YP_008376513.1|	-	2.2e-43	148.7	1.9	2.5e-43	148.5	1.9	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
BtpA	PF03437.15	gi|529077511|ref|YP_008376514.1|	-	3.3e-80	269.2	0.5	3.7e-80	269.0	0.5	1.0	1	0	0	1	1	1	1	BtpA	family
Trp_syntA	PF00290.20	gi|529077511|ref|YP_008376514.1|	-	8.9e-05	21.5	0.2	0.00026	20.0	0.1	1.9	2	0	0	2	2	2	1	Tryptophan	synthase	alpha	chain
PcrB	PF01884.17	gi|529077511|ref|YP_008376514.1|	-	0.00037	20.0	0.6	0.053	13.0	0.2	2.3	1	1	1	2	2	2	2	PcrB	family
B12-binding	PF02310.19	gi|529077511|ref|YP_008376514.1|	-	0.013	15.5	0.9	0.029	14.4	0.4	1.7	1	1	0	1	1	1	0	B12	binding	domain
Asparaginase_C	PF17763.1	gi|529077511|ref|YP_008376514.1|	-	0.028	14.6	0.1	0.12	12.6	0.0	2.0	2	1	0	2	2	2	0	Glutaminase/Asparaginase	C-terminal	domain
Actin	PF00022.19	gi|529077511|ref|YP_008376514.1|	-	0.036	12.7	0.0	0.05	12.2	0.0	1.2	1	0	0	1	1	1	0	Actin
FMN_dh	PF01070.18	gi|529077511|ref|YP_008376514.1|	-	0.32	10.0	5.2	0.71	8.8	2.4	2.4	2	1	1	3	3	3	0	FMN-dependent	dehydrogenase
Usp	PF00582.26	gi|529077512|ref|YP_008376515.1|	-	2.4e-17	63.7	0.9	3.4e-17	63.3	0.9	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
Glyco_hydro_2_C	PF02836.17	gi|529077513|ref|YP_008376516.1|	-	5.2e-28	98.0	0.1	2.6e-27	95.7	0.1	1.9	1	1	0	1	1	1	1	Glycosyl	hydrolases	family	2,	TIM	barrel	domain
Glyco_hydro_2_N	PF02837.18	gi|529077513|ref|YP_008376516.1|	-	4.6e-21	75.4	0.1	9.8e-21	74.4	0.1	1.6	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2,	sugar	binding	domain
Glyco_hydro_2	PF00703.21	gi|529077513|ref|YP_008376516.1|	-	5.1e-07	30.3	0.1	1.2e-06	29.2	0.1	1.7	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2
BetaGal_dom4_5	PF13364.6	gi|529077513|ref|YP_008376516.1|	-	8.4e-06	26.3	0.0	6.2e-05	23.5	0.0	2.3	2	0	0	2	2	2	1	Beta-galactosidase	jelly	roll	domain
MFS_1	PF07690.16	gi|529077514|ref|YP_008376517.1|	-	4.9e-47	160.6	51.8	1.4e-36	126.2	23.6	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|529077514|ref|YP_008376517.1|	-	9.9e-09	34.6	9.8	9.9e-09	34.6	9.8	2.5	2	1	0	2	2	2	1	Sugar	(and	other)	transporter
MFS_1_like	PF12832.7	gi|529077514|ref|YP_008376517.1|	-	0.0024	16.8	15.7	0.044	12.6	4.4	2.3	1	1	1	2	2	2	2	MFS_1	like	family
CLN3	PF02487.17	gi|529077514|ref|YP_008376517.1|	-	0.0086	15.2	1.0	0.0086	15.2	1.0	2.3	2	0	0	2	2	2	1	CLN3	protein
MFS_3	PF05977.13	gi|529077514|ref|YP_008376517.1|	-	1.1	7.6	19.1	2.7	6.3	19.1	1.7	1	1	0	1	1	1	0	Transmembrane	secretion	effector
Lactamase_B_2	PF12706.7	gi|529077515|ref|YP_008376518.1|	-	5.3e-08	32.6	0.0	6.8e-08	32.3	0.0	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
PfkB	PF00294.24	gi|529077516|ref|YP_008376519.1|	-	4.1e-53	180.7	0.0	5e-53	180.4	0.0	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
adh_short	PF00106.25	gi|529077517|ref|YP_008376520.1|	-	4.7e-48	163.2	0.1	5.9e-48	162.9	0.1	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|529077517|ref|YP_008376520.1|	-	5.7e-45	153.7	0.0	6.7e-45	153.5	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
Epimerase	PF01370.21	gi|529077517|ref|YP_008376520.1|	-	3.2e-09	36.6	0.1	4.5e-09	36.1	0.1	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
KR	PF08659.10	gi|529077517|ref|YP_008376520.1|	-	2e-07	31.1	1.4	4.7e-07	29.9	1.4	1.6	1	1	0	1	1	1	1	KR	domain
3Beta_HSD	PF01073.19	gi|529077517|ref|YP_008376520.1|	-	0.0024	16.9	0.2	0.0031	16.6	0.2	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
GDP_Man_Dehyd	PF16363.5	gi|529077517|ref|YP_008376520.1|	-	0.0033	16.9	0.1	0.0049	16.3	0.1	1.3	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3HCDH_N	PF02737.18	gi|529077517|ref|YP_008376520.1|	-	0.0034	17.3	0.6	0.0046	16.9	0.6	1.2	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Polysacc_synt_2	PF02719.15	gi|529077517|ref|YP_008376520.1|	-	0.0041	16.3	0.1	0.0061	15.7	0.1	1.2	1	0	0	1	1	1	1	Polysaccharide	biosynthesis	protein
TrkA_N	PF02254.18	gi|529077517|ref|YP_008376520.1|	-	0.014	15.6	0.6	0.03	14.6	0.6	1.5	1	0	0	1	1	1	0	TrkA-N	domain
AlaDh_PNT_C	PF01262.21	gi|529077517|ref|YP_008376520.1|	-	0.014	14.7	1.2	0.022	14.1	1.2	1.2	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
RmlD_sub_bind	PF04321.17	gi|529077517|ref|YP_008376520.1|	-	0.021	13.9	1.6	0.072	12.2	0.7	2.2	2	1	0	2	2	2	0	RmlD	substrate	binding	domain
NAD_binding_2	PF03446.15	gi|529077517|ref|YP_008376520.1|	-	0.022	15.0	0.4	0.039	14.1	0.4	1.5	1	1	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
MTS	PF05175.14	gi|529077517|ref|YP_008376520.1|	-	0.03	13.9	0.4	0.048	13.2	0.4	1.3	1	0	0	1	1	1	0	Methyltransferase	small	domain
UDPG_MGDP_dh_N	PF03721.14	gi|529077517|ref|YP_008376520.1|	-	0.042	13.4	0.3	0.059	12.9	0.3	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Urocanase	PF01175.18	gi|529077517|ref|YP_008376520.1|	-	0.074	12.7	0.3	0.11	12.1	0.3	1.2	1	0	0	1	1	1	0	Urocanase	Rossmann-like	domain
NAD_binding_8	PF13450.6	gi|529077517|ref|YP_008376520.1|	-	0.087	13.1	0.2	0.25	11.6	0.2	1.8	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
THF_DHG_CYH_C	PF02882.19	gi|529077517|ref|YP_008376520.1|	-	0.097	12.0	0.0	0.17	11.2	0.0	1.3	1	0	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
NmrA	PF05368.13	gi|529077517|ref|YP_008376520.1|	-	0.14	11.7	1.4	0.14	11.7	0.3	1.5	2	0	0	2	2	2	0	NmrA-like	family
AdoHcyase_NAD	PF00670.21	gi|529077517|ref|YP_008376520.1|	-	0.43	10.6	2.7	0.79	9.8	2.5	1.5	1	1	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
UxuA	PF03786.13	gi|529077518|ref|YP_008376521.1|	-	2e-84	283.4	0.0	6.1e-60	202.9	0.0	2.0	1	1	1	2	2	2	2	D-mannonate	dehydratase	(UxuA)
AP_endonuc_2	PF01261.24	gi|529077518|ref|YP_008376521.1|	-	1.2e-14	54.2	0.1	1.9e-14	53.6	0.1	1.3	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
IclR	PF01614.18	gi|529077519|ref|YP_008376522.1|	-	2.1e-31	108.4	0.0	3.6e-31	107.7	0.0	1.4	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|529077519|ref|YP_008376522.1|	-	4.5e-14	52.0	0.1	8.5e-12	44.7	0.0	2.4	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|529077519|ref|YP_008376522.1|	-	3.7e-06	26.7	0.1	0.00014	21.7	0.0	2.3	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.6	gi|529077519|ref|YP_008376522.1|	-	7e-06	25.5	0.0	9.4e-05	21.9	0.0	2.4	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|529077519|ref|YP_008376522.1|	-	1.1e-05	25.2	0.1	0.00077	19.3	0.0	2.4	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|529077519|ref|YP_008376522.1|	-	2.4e-05	24.1	0.0	9.3e-05	22.2	0.0	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|529077519|ref|YP_008376522.1|	-	8.2e-05	22.6	0.0	0.00019	21.4	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|529077519|ref|YP_008376522.1|	-	0.00013	21.9	0.1	0.0015	18.4	0.0	2.5	3	0	0	3	3	3	1	HTH	domain
MarR	PF01047.22	gi|529077519|ref|YP_008376522.1|	-	0.005	16.7	0.0	0.025	14.5	0.0	2.0	2	0	0	2	2	2	1	MarR	family
Fe_dep_repress	PF01325.19	gi|529077519|ref|YP_008376522.1|	-	0.0064	16.7	0.1	0.017	15.3	0.1	1.7	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_AsnC-type	PF13404.6	gi|529077519|ref|YP_008376522.1|	-	0.024	14.5	0.8	2.6	8.0	0.0	2.8	3	0	0	3	3	3	0	AsnC-type	helix-turn-helix	domain
Adaptin_binding	PF10199.9	gi|529077519|ref|YP_008376522.1|	-	0.046	14.3	0.9	0.43	11.2	0.9	2.2	1	1	0	1	1	1	0	Alpha	and	gamma	adaptin	binding	protein	p34
CENP-B_N	PF04218.13	gi|529077519|ref|YP_008376522.1|	-	0.055	13.1	0.0	0.35	10.5	0.0	2.2	2	0	0	2	2	2	0	CENP-B	N-terminal	DNA-binding	domain
DUF742	PF05331.11	gi|529077519|ref|YP_008376522.1|	-	0.074	12.9	0.0	0.17	11.7	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
Rrf2	PF02082.20	gi|529077519|ref|YP_008376522.1|	-	0.094	13.1	0.0	0.87	10.0	0.0	2.1	2	0	0	2	2	2	0	Transcriptional	regulator
YflT	PF11181.8	gi|529077519|ref|YP_008376522.1|	-	0.13	12.8	1.4	49	4.5	0.1	3.4	3	1	0	3	3	3	0	Heat	induced	stress	protein	YflT
HTH_45	PF14947.6	gi|529077519|ref|YP_008376522.1|	-	0.15	12.1	0.0	0.33	11.0	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix
UPF0236	PF06782.11	gi|529077520|ref|YP_008376523.1|	-	2.3e-06	26.5	0.0	0.00018	20.3	0.0	2.2	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|529077520|ref|YP_008376523.1|	-	0.0028	16.6	0.3	2.8	6.7	0.1	2.8	2	2	0	2	2	2	2	Transposase,	Mutator	family
DDE_Tnp_IS66	PF03050.14	gi|529077520|ref|YP_008376523.1|	-	0.0032	17.0	0.1	0.0046	16.5	0.1	1.2	1	0	0	1	1	1	1	Transposase	IS66	family
GTP_EFTU	PF00009.27	gi|529077521|ref|YP_008376524.1|	-	9.7e-34	116.6	0.0	1.5e-33	116.0	0.0	1.2	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D2	PF03144.25	gi|529077521|ref|YP_008376524.1|	-	1.4e-08	35.0	0.6	4e-08	33.5	0.6	1.9	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
GTP_EFTU_D3	PF03143.17	gi|529077521|ref|YP_008376524.1|	-	2e-07	31.3	0.0	1.1e-06	28.9	0.0	2.1	1	1	0	1	1	1	1	Elongation	factor	Tu	C-terminal	domain
ATP_bind_1	PF03029.17	gi|529077521|ref|YP_008376524.1|	-	0.014	15.2	0.3	0.12	12.2	0.0	2.0	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
MMR_HSR1	PF01926.23	gi|529077521|ref|YP_008376524.1|	-	0.11	12.6	0.0	0.4	10.8	0.0	1.9	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
Hydrolase_3	PF08282.12	gi|529077522|ref|YP_008376525.1|	-	8.6e-26	91.2	0.0	1.5e-17	64.2	0.1	2.0	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|529077522|ref|YP_008376525.1|	-	3.4e-06	27.5	4.1	0.00038	20.8	4.1	3.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.13	gi|529077522|ref|YP_008376525.1|	-	4.2e-06	26.5	0.0	5.2e-05	22.9	0.0	2.0	2	0	0	2	2	2	1	Sucrose-6F-phosphate	phosphohydrolase
HAD_2	PF13419.6	gi|529077522|ref|YP_008376525.1|	-	0.024	14.7	0.0	0.024	14.7	0.0	1.9	2	0	0	2	2	2	0	Haloacid	dehalogenase-like	hydrolase
Trehalose_PPase	PF02358.16	gi|529077522|ref|YP_008376525.1|	-	0.16	11.0	0.0	0.35	10.0	0.0	1.6	1	0	0	1	1	1	0	Trehalose-phosphatase
DUF389	PF04087.14	gi|529077523|ref|YP_008376526.1|	-	6.8e-34	116.9	15.9	6.8e-34	116.9	15.9	2.1	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF389)
GGDEF_2	PF17853.1	gi|529077523|ref|YP_008376526.1|	-	0.2	11.9	1.5	2.8	8.2	0.0	3.1	3	1	0	3	3	3	0	GGDEF-like	domain
SIMPL	PF04402.14	gi|529077524|ref|YP_008376527.1|	-	2.7e-35	122.7	14.7	3.1e-35	122.5	14.7	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF541)
DotU	PF09850.9	gi|529077524|ref|YP_008376527.1|	-	0.014	15.1	0.6	0.041	13.6	0.1	1.9	2	0	0	2	2	2	0	Type	VI	secretion	system	protein	DotU
DUF1664	PF07889.12	gi|529077524|ref|YP_008376527.1|	-	0.11	12.5	0.3	0.99	9.5	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
BPD_transp_1	PF00528.22	gi|529077525|ref|YP_008376528.1|	-	3.1e-17	62.9	9.3	3.1e-17	62.9	9.3	2.0	2	1	1	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|529077526|ref|YP_008376529.1|	-	3.4e-35	121.5	0.0	4.4e-35	121.2	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529077526|ref|YP_008376529.1|	-	3.1e-10	40.4	0.0	0.00032	20.6	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|529077526|ref|YP_008376529.1|	-	1e-06	28.3	0.0	0.0022	17.5	0.0	2.1	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_30	PF13604.6	gi|529077526|ref|YP_008376529.1|	-	0.00011	22.0	0.1	0.00019	21.2	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|529077526|ref|YP_008376529.1|	-	0.00022	21.1	0.0	0.00036	20.5	0.0	1.3	1	0	0	1	1	1	1	RsgA	GTPase
AAA_29	PF13555.6	gi|529077526|ref|YP_008376529.1|	-	0.00037	20.2	0.0	0.00068	19.3	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|529077526|ref|YP_008376529.1|	-	0.00091	19.6	0.2	0.0014	19.0	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|529077526|ref|YP_008376529.1|	-	0.0024	18.4	0.0	0.0033	18.0	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_27	PF13514.6	gi|529077526|ref|YP_008376529.1|	-	0.0025	17.4	0.0	0.0049	16.5	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
ABC_ATPase	PF09818.9	gi|529077526|ref|YP_008376529.1|	-	0.003	16.4	0.0	0.71	8.6	0.0	2.1	2	0	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA_22	PF13401.6	gi|529077526|ref|YP_008376529.1|	-	0.0085	16.4	0.0	0.014	15.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|529077526|ref|YP_008376529.1|	-	0.0097	15.2	0.0	0.014	14.6	0.0	1.2	1	0	0	1	1	1	1	Zeta	toxin
AAA_33	PF13671.6	gi|529077526|ref|YP_008376529.1|	-	0.018	15.2	0.0	0.025	14.8	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|529077526|ref|YP_008376529.1|	-	0.023	15.2	0.0	0.048	14.2	0.0	1.5	2	0	0	2	2	1	0	AAA	domain
AAA_24	PF13479.6	gi|529077526|ref|YP_008376529.1|	-	0.038	13.7	0.0	0.055	13.2	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
APS_kinase	PF01583.20	gi|529077526|ref|YP_008376529.1|	-	0.045	13.6	0.0	0.085	12.7	0.0	1.5	1	0	0	1	1	1	0	Adenylylsulphate	kinase
SbcCD_C	PF13558.6	gi|529077526|ref|YP_008376529.1|	-	0.11	12.7	0.4	1.3	9.3	0.4	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
CSD2	PF17876.1	gi|529077526|ref|YP_008376529.1|	-	0.18	12.0	0.0	0.32	11.2	0.0	1.4	1	0	0	1	1	1	0	Cold	shock	domain
Adeno_IVa2	PF02456.15	gi|529077526|ref|YP_008376529.1|	-	0.18	10.6	0.0	0.5	9.1	0.0	1.6	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
BPD_transp_1	PF00528.22	gi|529077527|ref|YP_008376530.1|	-	1.2e-19	70.8	6.4	1.2e-19	70.8	6.4	1.8	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF3169	PF11368.8	gi|529077527|ref|YP_008376530.1|	-	0.3	10.6	1.9	5.2	6.5	0.3	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3169)
SBP_bac_3	PF00497.20	gi|529077528|ref|YP_008376531.1|	-	8.1e-55	185.7	0.2	9.2e-55	185.5	0.2	1.0	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	3
Lig_chan-Glu_bd	PF10613.9	gi|529077528|ref|YP_008376531.1|	-	6.6e-06	26.3	0.1	2.8e-05	24.3	0.0	2.0	2	1	0	2	2	2	1	Ligated	ion	channel	L-glutamate-	and	glycine-binding	site
NMT1	PF09084.11	gi|529077528|ref|YP_008376531.1|	-	3.9e-05	23.7	0.2	0.00046	20.2	0.1	2.0	2	0	0	2	2	2	1	NMT1/THI5	like
OpuAC	PF04069.12	gi|529077528|ref|YP_008376531.1|	-	0.0059	16.2	0.5	0.93	9.0	0.0	2.1	2	0	0	2	2	2	2	Substrate	binding	domain	of	ABC-type	glycine	betaine	transport	system
FtsH_ext	PF06480.15	gi|529077528|ref|YP_008376531.1|	-	0.061	13.7	0.0	0.095	13.1	0.0	1.3	1	0	0	1	1	1	0	FtsH	Extracellular
NOG1_N	PF17835.1	gi|529077529|ref|YP_008376532.1|	-	2.1e-45	154.6	0.1	4e-45	153.6	0.1	1.5	1	0	0	1	1	1	1	NOG1	N-terminal	helical	domain
NOG1	PF06858.14	gi|529077529|ref|YP_008376532.1|	-	1.2e-21	76.3	0.0	2.7e-21	75.1	0.0	1.7	1	0	0	1	1	1	1	Nucleolar	GTP-binding	protein	1	(NOG1)
MMR_HSR1	PF01926.23	gi|529077529|ref|YP_008376532.1|	-	5.4e-21	74.8	0.0	1.1e-20	73.8	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.18	gi|529077529|ref|YP_008376532.1|	-	2.5e-11	43.4	0.0	4.1e-11	42.6	0.0	1.3	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
Dynamin_N	PF00350.23	gi|529077529|ref|YP_008376532.1|	-	5e-06	26.7	0.2	0.091	12.8	0.0	2.8	2	1	1	3	3	3	2	Dynamin	family
AIG1	PF04548.16	gi|529077529|ref|YP_008376532.1|	-	0.00061	19.2	0.0	0.00096	18.5	0.0	1.3	1	0	0	1	1	1	1	AIG1	family
AAA_16	PF13191.6	gi|529077529|ref|YP_008376532.1|	-	0.011	16.2	0.4	0.064	13.6	0.0	2.2	1	1	1	2	2	2	0	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|529077529|ref|YP_008376532.1|	-	0.02	14.8	0.0	0.082	12.8	0.0	2.0	1	1	0	1	1	1	0	RsgA	GTPase
Ras	PF00071.22	gi|529077529|ref|YP_008376532.1|	-	0.021	14.4	0.0	0.056	13.0	0.0	1.7	1	1	0	1	1	1	0	Ras	family
GTP_EFTU	PF00009.27	gi|529077529|ref|YP_008376532.1|	-	0.031	13.8	0.1	0.27	10.7	0.1	2.3	1	1	1	2	2	2	0	Elongation	factor	Tu	GTP	binding	domain
FUSC	PF04632.12	gi|529077529|ref|YP_008376532.1|	-	0.032	12.8	3.0	0.045	12.3	3.0	1.2	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
Phage_tail_APC	PF16778.5	gi|529077529|ref|YP_008376532.1|	-	0.086	12.7	2.6	0.3	11.0	2.6	2.0	1	0	0	1	1	1	0	Phage	tail	assembly	chaperone	protein
Peptidase_S46	PF10459.9	gi|529077529|ref|YP_008376532.1|	-	0.12	10.9	1.1	0.16	10.5	1.1	1.1	1	0	0	1	1	1	0	Peptidase	S46
Roc	PF08477.13	gi|529077529|ref|YP_008376532.1|	-	0.16	12.2	0.0	0.85	9.9	0.0	2.1	1	1	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
PemK_toxin	PF02452.17	gi|529077530|ref|YP_008376533.1|	-	6.5e-25	87.7	0.1	7e-25	87.6	0.1	1.0	1	0	0	1	1	1	1	PemK-like,	MazF-like	toxin	of	type	II	toxin-antitoxin	system
MazE_antitoxin	PF04014.18	gi|529077531|ref|YP_008376534.1|	-	5.6e-11	42.1	2.2	7.5e-11	41.7	2.2	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|529077531|ref|YP_008376534.1|	-	0.015	15.8	0.0	0.023	15.2	0.0	1.3	1	0	0	1	1	1	0	prlF	antitoxin	for	toxin	YhaV_toxin
AAA	PF00004.29	gi|529077532|ref|YP_008376535.1|	-	3.6e-44	150.4	0.1	9.3e-44	149.1	0.1	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|529077532|ref|YP_008376535.1|	-	6.4e-14	51.5	0.2	2e-13	49.9	0.2	1.9	1	0	0	1	1	1	1	AAA+	lid	domain
AAA_2	PF07724.14	gi|529077532|ref|YP_008376535.1|	-	3.7e-08	33.7	0.5	1.2e-07	32.0	0.0	2.1	2	0	0	2	2	2	1	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|529077532|ref|YP_008376535.1|	-	1.4e-07	31.4	0.4	1.3e-06	28.3	0.0	2.4	3	0	0	3	3	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_5	PF07728.14	gi|529077532|ref|YP_008376535.1|	-	1.2e-06	28.5	0.7	6.4e-06	26.2	0.2	2.5	2	1	0	2	2	1	1	AAA	domain	(dynein-related	subfamily)
AAA_16	PF13191.6	gi|529077532|ref|YP_008376535.1|	-	7e-06	26.5	7.6	0.00012	22.5	0.0	3.6	2	2	2	4	4	3	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|529077532|ref|YP_008376535.1|	-	1.4e-05	25.4	2.7	0.00049	20.4	0.0	2.9	2	1	1	3	3	3	1	AAA	domain
ZapB	PF06005.12	gi|529077532|ref|YP_008376535.1|	-	0.00012	22.4	4.0	0.00012	22.4	4.0	2.5	4	0	0	4	4	2	1	Cell	division	protein	ZapB
DUF815	PF05673.13	gi|529077532|ref|YP_008376535.1|	-	0.00027	20.2	0.0	0.00049	19.3	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_33	PF13671.6	gi|529077532|ref|YP_008376535.1|	-	0.00032	20.9	0.5	0.0016	18.6	0.1	2.5	2	1	0	2	2	2	1	AAA	domain
TIP49	PF06068.13	gi|529077532|ref|YP_008376535.1|	-	0.001	18.3	0.1	0.0027	17.0	0.0	1.6	1	1	0	1	1	1	1	TIP49	P-loop	domain
AAA_28	PF13521.6	gi|529077532|ref|YP_008376535.1|	-	0.0014	18.9	0.8	0.0077	16.5	0.0	2.5	2	1	0	2	2	2	1	AAA	domain
Sigma54_activat	PF00158.26	gi|529077532|ref|YP_008376535.1|	-	0.0023	17.6	0.1	0.03	14.0	0.1	2.5	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_14	PF13173.6	gi|529077532|ref|YP_008376535.1|	-	0.0026	17.8	0.0	0.006	16.6	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
Mg_chelatase	PF01078.21	gi|529077532|ref|YP_008376535.1|	-	0.0028	17.1	0.0	0.0053	16.2	0.0	1.4	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_17	PF13207.6	gi|529077532|ref|YP_008376535.1|	-	0.0033	17.9	2.8	0.041	14.3	0.1	2.8	2	1	0	2	2	2	1	AAA	domain
AAA_18	PF13238.6	gi|529077532|ref|YP_008376535.1|	-	0.0034	17.9	0.1	0.022	15.3	0.0	2.3	2	1	0	2	2	2	1	AAA	domain
NACHT	PF05729.12	gi|529077532|ref|YP_008376535.1|	-	0.0044	16.9	0.3	0.051	13.5	0.0	2.3	1	1	1	2	2	2	1	NACHT	domain
AAA_11	PF13086.6	gi|529077532|ref|YP_008376535.1|	-	0.0048	16.7	0.2	0.042	13.6	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
IstB_IS21	PF01695.17	gi|529077532|ref|YP_008376535.1|	-	0.0072	16.1	0.0	0.017	14.9	0.0	1.5	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
Taxilin	PF09728.9	gi|529077532|ref|YP_008376535.1|	-	0.0086	15.3	1.8	0.0086	15.3	1.8	1.7	2	0	0	2	2	2	1	Myosin-like	coiled-coil	protein
AAA_3	PF07726.11	gi|529077532|ref|YP_008376535.1|	-	0.0095	15.8	0.1	0.034	14.0	0.0	2.0	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
CPT	PF07931.12	gi|529077532|ref|YP_008376535.1|	-	0.013	15.4	0.0	0.026	14.3	0.0	1.6	1	0	0	1	1	1	0	Chloramphenicol	phosphotransferase-like	protein
TsaE	PF02367.17	gi|529077532|ref|YP_008376535.1|	-	0.017	15.2	0.0	0.032	14.2	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
ATPase	PF06745.13	gi|529077532|ref|YP_008376535.1|	-	0.019	14.3	3.1	0.16	11.3	0.1	3.0	2	1	0	2	2	2	0	KaiC
GIT_CC	PF16559.5	gi|529077532|ref|YP_008376535.1|	-	0.021	14.7	3.8	0.48	10.3	2.5	2.7	2	0	0	2	2	2	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
AAA_7	PF12775.7	gi|529077532|ref|YP_008376535.1|	-	0.022	14.3	0.1	0.054	13.0	0.1	1.7	1	1	0	1	1	1	0	P-loop	containing	dynein	motor	region
NB-ARC	PF00931.22	gi|529077532|ref|YP_008376535.1|	-	0.023	13.9	0.0	0.062	12.5	0.0	1.8	1	1	0	1	1	1	0	NB-ARC	domain
Sigma54_activ_2	PF14532.6	gi|529077532|ref|YP_008376535.1|	-	0.027	14.6	0.0	0.17	12.0	0.0	2.2	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA_24	PF13479.6	gi|529077532|ref|YP_008376535.1|	-	0.028	14.1	0.7	0.11	12.2	0.1	2.2	2	1	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.22	gi|529077532|ref|YP_008376535.1|	-	0.035	14.5	0.0	0.075	13.4	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
NTPase_1	PF03266.15	gi|529077532|ref|YP_008376535.1|	-	0.037	13.9	0.8	0.95	9.3	0.1	2.7	2	1	1	3	3	3	0	NTPase
Torsin	PF06309.11	gi|529077532|ref|YP_008376535.1|	-	0.051	13.7	0.0	0.1	12.7	0.0	1.4	1	0	0	1	1	1	0	Torsin
DUF4515	PF14988.6	gi|529077532|ref|YP_008376535.1|	-	0.052	13.4	2.6	0.059	13.2	1.5	1.6	2	0	0	2	2	1	0	Domain	of	unknown	function	(DUF4515)
COG6	PF06419.11	gi|529077532|ref|YP_008376535.1|	-	0.053	11.7	1.0	0.09	11.0	1.0	1.2	1	0	0	1	1	1	0	Conserved	oligomeric	complex	COG6
bZIP_2	PF07716.15	gi|529077532|ref|YP_008376535.1|	-	0.13	12.4	7.0	0.39	10.8	1.6	2.6	1	1	1	2	2	2	0	Basic	region	leucine	zipper
Parvo_NS1	PF01057.17	gi|529077532|ref|YP_008376535.1|	-	0.15	11.1	0.0	0.28	10.2	0.0	1.4	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
ABC_tran	PF00005.27	gi|529077532|ref|YP_008376535.1|	-	0.15	12.5	0.4	0.45	11.0	0.0	2.1	2	1	0	2	2	1	0	ABC	transporter
Atg14	PF10186.9	gi|529077532|ref|YP_008376535.1|	-	0.21	10.6	0.9	0.34	9.9	0.9	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Cep57_CLD_2	PF14197.6	gi|529077532|ref|YP_008376535.1|	-	0.33	11.1	4.9	1.3	9.2	4.9	2.0	1	0	0	1	1	1	0	Centrosome	localisation	domain	of	PPC89
AAA_25	PF13481.6	gi|529077532|ref|YP_008376535.1|	-	0.55	9.8	7.4	0.69	9.5	0.1	3.6	3	1	1	4	4	4	0	AAA	domain
AAA_23	PF13476.6	gi|529077532|ref|YP_008376535.1|	-	1.5	9.3	4.1	6.6	7.2	0.0	2.7	2	1	0	2	2	2	0	AAA	domain
AAA_13	PF13166.6	gi|529077532|ref|YP_008376535.1|	-	2.2	6.8	5.2	9.1	4.8	3.7	2.3	2	1	0	2	2	2	0	AAA	domain
Peptidase_M3	PF01432.20	gi|529077533|ref|YP_008376536.1|	-	2.9e-67	227.9	2.4	2.9e-67	227.9	2.4	1.9	2	0	0	2	2	2	1	Peptidase	family	M3
Peptidase_M3_N	PF08439.10	gi|529077533|ref|YP_008376536.1|	-	1.8e-23	82.6	0.3	1.8e-23	82.6	0.3	3.2	4	0	0	4	4	4	1	Oligopeptidase	F
Reprolysin_3	PF13582.6	gi|529077533|ref|YP_008376536.1|	-	0.034	14.7	0.2	0.28	11.7	0.0	2.4	2	0	0	2	2	2	0	Metallo-peptidase	family	M12B	Reprolysin-like
RHH_1	PF01402.21	gi|529077534|ref|YP_008376537.1|	-	8.6e-05	22.3	2.9	0.00027	20.8	0.0	2.5	2	1	1	3	3	3	1	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|529077534|ref|YP_008376537.1|	-	0.0033	17.6	0.1	0.0037	17.4	0.1	1.2	1	0	0	1	1	1	1	Ribbon-Helix-Helix	transcriptional	regulator	family
CbeA_antitoxin	PF06154.11	gi|529077534|ref|YP_008376537.1|	-	0.02	15.5	0.1	0.035	14.7	0.1	1.4	1	1	0	1	1	1	0	CbeA_antitoxin,	type	IV,	cytoskeleton	bundling-enhancing	factor	A
PIN	PF01850.21	gi|529077535|ref|YP_008376538.1|	-	8.8e-08	32.7	0.3	1e-07	32.5	0.3	1.1	1	0	0	1	1	1	1	PIN	domain
LNS2	PF08235.13	gi|529077535|ref|YP_008376538.1|	-	0.022	14.2	0.0	0.026	14.0	0.0	1.0	1	0	0	1	1	1	0	LNS2	(Lipin/Ned1/Smp2)
Glyco_hydro_3	PF00933.21	gi|529077537|ref|YP_008376540.1|	-	4.2e-69	233.4	0.0	5.3e-69	233.0	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.22	gi|529077537|ref|YP_008376540.1|	-	9.4e-49	166.1	0.0	2.9e-48	164.6	0.0	1.8	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.6	gi|529077537|ref|YP_008376540.1|	-	5.6e-14	52.0	0.0	1.4e-13	50.8	0.0	1.7	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
RHH_1	PF01402.21	gi|529077538|ref|YP_008376541.1|	-	0.065	13.2	0.0	0.092	12.7	0.0	1.2	1	0	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
IGPS	PF00218.21	gi|529077539|ref|YP_008376542.1|	-	1.5e-65	220.9	0.0	1.8e-65	220.7	0.0	1.0	1	0	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
FMN_dh	PF01070.18	gi|529077539|ref|YP_008376542.1|	-	6.4e-07	28.7	2.4	1.5e-06	27.5	2.5	1.5	2	0	0	2	2	2	1	FMN-dependent	dehydrogenase
His_biosynth	PF00977.21	gi|529077539|ref|YP_008376542.1|	-	2.7e-05	23.7	0.0	0.00067	19.2	0.1	2.3	2	1	0	2	2	2	1	Histidine	biosynthesis	protein
NanE	PF04131.14	gi|529077539|ref|YP_008376542.1|	-	7e-05	22.1	0.4	0.00015	21.1	0.2	1.7	2	1	0	2	2	2	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
QRPTase_C	PF01729.19	gi|529077539|ref|YP_008376542.1|	-	0.0038	17.0	0.2	0.0064	16.3	0.2	1.3	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
Trp_syntA	PF00290.20	gi|529077539|ref|YP_008376542.1|	-	0.025	13.4	0.0	0.039	12.8	0.0	1.3	1	0	0	1	1	1	0	Tryptophan	synthase	alpha	chain
DHO_dh	PF01180.21	gi|529077539|ref|YP_008376542.1|	-	0.047	12.9	0.0	0.063	12.5	0.0	1.3	1	0	0	1	1	1	0	Dihydroorotate	dehydrogenase
ThiG	PF05690.14	gi|529077539|ref|YP_008376542.1|	-	0.11	11.7	2.3	0.85	8.9	0.7	2.5	2	1	1	3	3	3	0	Thiazole	biosynthesis	protein	ThiG
BMC	PF00936.19	gi|529077539|ref|YP_008376542.1|	-	0.57	10.2	3.9	2.1	8.4	0.8	2.7	1	1	1	2	2	2	0	BMC	domain
PALP	PF00291.25	gi|529077540|ref|YP_008376543.1|	-	4e-41	141.4	0.8	4.9e-41	141.1	0.8	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Trp_syntA	PF00290.20	gi|529077541|ref|YP_008376544.1|	-	2.8e-92	308.2	0.0	3.4e-92	308.0	0.0	1.0	1	0	0	1	1	1	1	Tryptophan	synthase	alpha	chain
His_biosynth	PF00977.21	gi|529077541|ref|YP_008376544.1|	-	0.00016	21.2	0.1	0.00035	20.1	0.1	1.6	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
PcrB	PF01884.17	gi|529077541|ref|YP_008376544.1|	-	0.00017	21.1	0.2	0.0039	16.7	0.2	2.2	2	0	0	2	2	2	1	PcrB	family
PucR	PF07905.11	gi|529077541|ref|YP_008376544.1|	-	0.014	15.6	0.0	0.073	13.4	0.0	2.1	3	0	0	3	3	3	0	Purine	catabolism	regulatory	protein-like	family
FMN_dh	PF01070.18	gi|529077541|ref|YP_008376544.1|	-	0.018	14.0	0.0	0.03	13.4	0.0	1.4	1	1	0	1	1	1	0	FMN-dependent	dehydrogenase
IGPS	PF00218.21	gi|529077541|ref|YP_008376544.1|	-	0.21	10.8	0.0	0.26	10.4	0.0	1.3	1	0	0	1	1	1	0	Indole-3-glycerol	phosphate	synthase
LppX_LprAFG	PF07161.13	gi|529077542|ref|YP_008376545.1|	-	0.0032	17.3	1.4	0.0043	16.9	1.4	1.2	1	0	0	1	1	1	1	LppX_LprAFG	lipoprotein
LPAM_2	PF13627.6	gi|529077542|ref|YP_008376545.1|	-	4.7	7.2	6.8	7.6	6.5	6.8	1.3	1	0	0	1	1	1	0	Prokaryotic	lipoprotein-attachment	site
DeoC	PF01791.9	gi|529077544|ref|YP_008376547.1|	-	9.4e-45	153.1	1.9	1.2e-44	152.8	1.9	1.1	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
AP_endonuc_2	PF01261.24	gi|529077544|ref|YP_008376547.1|	-	3.1e-05	23.5	0.4	6.9e-05	22.4	0.2	1.6	2	0	0	2	2	2	1	Xylose	isomerase-like	TIM	barrel
HTH_20	PF12840.7	gi|529077545|ref|YP_008376548.1|	-	1.2e-14	54.1	0.2	2.5e-14	53.1	0.2	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
DprA_WH	PF17782.1	gi|529077545|ref|YP_008376548.1|	-	5.9e-05	23.1	1.0	5.9e-05	23.1	1.0	2.5	2	2	0	2	2	2	1	DprA	winged	helix	domain
HTH_5	PF01022.20	gi|529077545|ref|YP_008376548.1|	-	8.2e-05	22.4	0.0	0.00016	21.5	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|529077545|ref|YP_008376548.1|	-	0.00091	19.1	2.7	0.001	18.9	0.1	2.3	3	0	0	3	3	3	1	MarR	family
HTH_24	PF13412.6	gi|529077545|ref|YP_008376548.1|	-	0.0019	17.7	0.0	0.0059	16.1	0.0	1.8	2	1	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
BLACT_WH	PF17778.1	gi|529077545|ref|YP_008376548.1|	-	0.054	13.5	0.0	0.56	10.2	0.0	2.2	2	0	0	2	2	2	0	Beta-lactamase	associated	winged	helix	domain
DUF2513	PF10711.9	gi|529077545|ref|YP_008376548.1|	-	0.066	13.5	0.0	0.11	12.8	0.0	1.3	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
Trp_oprn_chp	PF09534.10	gi|529077545|ref|YP_008376548.1|	-	0.068	13.0	3.3	0.11	12.3	3.3	1.2	1	0	0	1	1	1	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
TrmB	PF01978.19	gi|529077547|ref|YP_008376550.1|	-	0.033	14.1	0.0	1.5	8.8	0.0	3.0	3	0	0	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
TFIIB	PF00382.19	gi|529077547|ref|YP_008376550.1|	-	0.2	11.7	0.5	10	6.2	0.0	3.6	4	0	0	4	4	4	0	Transcription	factor	TFIIB	repeat
DHQS	PF01959.16	gi|529077548|ref|YP_008376551.1|	-	1.1e-143	478.4	2.3	1.3e-143	478.2	2.3	1.0	1	0	0	1	1	1	1	3-dehydroquinate	synthase	II
Hint_2	PF13403.6	gi|529077548|ref|YP_008376551.1|	-	0.0034	17.7	3.3	0.045	14.1	0.1	3.3	4	0	0	4	4	4	1	Hint	domain
Hint	PF01079.20	gi|529077548|ref|YP_008376551.1|	-	0.017	14.7	0.0	0.89	9.0	0.0	2.4	2	0	0	2	2	2	0	Hint	module
QRPTase_C	PF01729.19	gi|529077548|ref|YP_008376551.1|	-	0.12	12.2	1.1	0.46	10.3	0.2	2.1	2	0	0	2	2	2	0	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
zf-ribbon_3	PF13248.6	gi|529077549|ref|YP_008376552.1|	-	0.00013	21.3	0.8	0.00021	20.6	0.8	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|529077549|ref|YP_008376552.1|	-	0.00052	19.9	0.1	0.00085	19.2	0.1	1.3	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
DZR	PF12773.7	gi|529077549|ref|YP_008376552.1|	-	0.00055	19.9	0.4	0.0015	18.5	0.4	1.5	1	1	0	1	1	1	1	Double	zinc	ribbon
zf-NADH-PPase	PF09297.11	gi|529077549|ref|YP_008376552.1|	-	0.001	18.7	0.2	0.084	12.5	0.2	2.2	2	0	0	2	2	2	1	NADH	pyrophosphatase	zinc	ribbon	domain
Prok-RING_1	PF14446.6	gi|529077549|ref|YP_008376552.1|	-	0.0012	18.7	0.6	0.0019	18.1	0.6	1.2	1	0	0	1	1	1	1	Prokaryotic	RING	finger	family	1
zinc_ribbon_2	PF13240.6	gi|529077549|ref|YP_008376552.1|	-	0.0034	17.1	1.7	0.073	12.8	1.8	2.1	1	1	0	1	1	1	1	zinc-ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|529077549|ref|YP_008376552.1|	-	0.0037	17.2	1.6	1.5	8.9	0.1	2.2	2	0	0	2	2	2	2	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
HscB_4_cys	PF18256.1	gi|529077549|ref|YP_008376552.1|	-	0.0076	16.0	3.7	0.014	15.2	3.7	1.3	1	0	0	1	1	1	1	Co-chaperone	HscB	tetracysteine	metal	binding	motif
Nudix_N_2	PF14803.6	gi|529077549|ref|YP_008376552.1|	-	0.0091	15.9	0.5	2.5	8.1	0.0	2.3	2	0	0	2	2	2	1	Nudix	N-terminal
zinc-ribbons_6	PF07191.12	gi|529077549|ref|YP_008376552.1|	-	0.05	13.6	0.5	0.084	12.9	0.5	1.3	1	0	0	1	1	1	0	zinc-ribbons
UPF0547	PF10571.9	gi|529077549|ref|YP_008376552.1|	-	0.051	13.7	3.0	0.65	10.1	3.4	2.1	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
TF_Zn_Ribbon	PF08271.12	gi|529077549|ref|YP_008376552.1|	-	0.062	12.8	0.8	0.1	12.1	0.8	1.4	1	0	0	1	1	1	0	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.10	gi|529077549|ref|YP_008376552.1|	-	0.066	13.3	2.1	0.35	11.0	2.1	2.0	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|529077549|ref|YP_008376552.1|	-	0.069	12.9	1.8	1.4	8.8	0.4	2.2	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-TFIIB	PF13453.6	gi|529077549|ref|YP_008376552.1|	-	0.079	12.3	1.0	3.7	7.0	0.1	2.5	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
HypA	PF01155.19	gi|529077549|ref|YP_008376552.1|	-	0.08	13.0	0.1	0.11	12.5	0.1	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-IS66	PF13005.7	gi|529077549|ref|YP_008376552.1|	-	0.15	12.5	2.8	2.2	8.7	2.8	2.2	1	1	0	1	1	1	0	zinc-finger	binding	domain	of	transposase	IS66
PhnA_Zn_Ribbon	PF08274.12	gi|529077549|ref|YP_008376552.1|	-	1	9.4	4.8	4.4	7.4	4.9	1.8	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
DHquinase_I	PF01487.15	gi|529077550|ref|YP_008376553.1|	-	8.5e-42	144.0	0.0	1e-41	143.7	0.0	1.0	1	0	0	1	1	1	1	Type	I	3-dehydroquinase
MarR_2	PF12802.7	gi|529077551|ref|YP_008376554.1|	-	2.4e-05	24.1	0.7	8e-05	22.4	0.0	2.0	3	0	0	3	3	3	1	MarR	family
HTH_IclR	PF09339.10	gi|529077551|ref|YP_008376554.1|	-	0.00036	20.3	0.0	0.00061	19.5	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|529077551|ref|YP_008376554.1|	-	0.0011	18.8	0.4	0.0046	16.8	0.1	2.1	2	1	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|529077551|ref|YP_008376554.1|	-	0.0054	16.6	0.0	0.011	15.7	0.0	1.6	1	1	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|529077551|ref|YP_008376554.1|	-	0.01	15.7	0.0	0.015	15.2	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|529077551|ref|YP_008376554.1|	-	0.024	14.7	0.0	0.045	13.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|529077551|ref|YP_008376554.1|	-	0.026	14.9	0.0	0.044	14.1	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
Sulfolobus_pRN	PF05584.11	gi|529077551|ref|YP_008376554.1|	-	0.046	13.8	0.0	0.1	12.6	0.0	1.5	2	0	0	2	2	2	0	Sulfolobus	plasmid	regulatory	protein
Fe_dep_repress	PF01325.19	gi|529077551|ref|YP_008376554.1|	-	0.077	13.2	0.0	0.19	11.9	0.0	1.7	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Penicillinase_R	PF03965.16	gi|529077551|ref|YP_008376554.1|	-	0.09	13.1	0.0	0.21	12.0	0.0	1.8	1	1	0	1	1	1	0	Penicillinase	repressor
GntR	PF00392.21	gi|529077551|ref|YP_008376554.1|	-	0.12	12.1	1.3	0.16	11.6	0.2	1.8	2	1	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
N6_N4_Mtase	PF01555.18	gi|529077552|ref|YP_008376555.1|	-	4e-31	108.5	0.0	5.7e-31	108.0	0.0	1.2	1	0	0	1	1	1	1	DNA	methylase
UPF0020	PF01170.18	gi|529077552|ref|YP_008376555.1|	-	0.00033	20.4	0.0	0.28	10.8	0.0	2.3	2	0	0	2	2	2	2	Putative	RNA	methylase	family	UPF0020
Methyltransf_11	PF08241.12	gi|529077552|ref|YP_008376555.1|	-	0.097	13.3	0.1	3.7	8.3	0.1	2.8	2	1	0	2	2	2	0	Methyltransferase	domain
MCPsignal	PF00015.21	gi|529077553|ref|YP_008376556.1|	-	3.5e-50	170.2	50.2	6.6e-46	156.3	29.9	4.0	1	1	3	4	4	4	3	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DUF948	PF06103.11	gi|529077553|ref|YP_008376556.1|	-	2e-06	28.0	33.8	0.036	14.3	4.3	4.5	2	2	2	4	4	4	3	Bacterial	protein	of	unknown	function	(DUF948)
Laminin_II	PF06009.12	gi|529077553|ref|YP_008376556.1|	-	0.00023	21.2	40.1	0.1	12.6	2.5	4.2	2	2	2	4	4	4	3	Laminin	Domain	II
DUF1664	PF07889.12	gi|529077553|ref|YP_008376556.1|	-	0.0061	16.6	30.4	0.52	10.4	6.1	4.2	2	2	2	4	4	4	3	Protein	of	unknown	function	(DUF1664)
TPR_MLP1_2	PF07926.12	gi|529077553|ref|YP_008376556.1|	-	0.0068	16.5	8.1	0.0068	16.5	8.1	2.8	2	1	0	2	2	2	1	TPR/MLP1/MLP2-like	protein
CorA	PF01544.18	gi|529077553|ref|YP_008376556.1|	-	0.011	15.1	19.1	0.099	11.9	7.2	2.1	2	0	0	2	2	2	0	CorA-like	Mg2+	transporter	protein
Syntaxin_2	PF14523.6	gi|529077553|ref|YP_008376556.1|	-	0.018	15.4	16.0	4.1	7.8	0.2	4.3	1	1	2	4	4	4	0	Syntaxin-like	protein
BLOC1_2	PF10046.9	gi|529077553|ref|YP_008376556.1|	-	0.027	14.8	28.7	1.3	9.4	2.3	5.0	2	2	2	4	4	4	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
T7SS_ESX_EspC	PF10824.8	gi|529077553|ref|YP_008376556.1|	-	0.034	14.6	30.6	0.069	13.6	0.5	3.8	1	1	1	3	3	3	0	Excreted	virulence	factor	EspC,	type	VII	ESX	diderm
Syntaxin-6_N	PF09177.11	gi|529077553|ref|YP_008376556.1|	-	0.04	14.5	2.2	0.04	14.5	2.2	4.0	2	2	2	4	4	4	0	Syntaxin	6,	N-terminal
HEPN_AbiU2	PF18734.1	gi|529077553|ref|YP_008376556.1|	-	0.053	13.0	0.9	0.7	9.4	0.1	2.8	2	1	1	3	3	3	0	AbiU2
FUSC	PF04632.12	gi|529077553|ref|YP_008376556.1|	-	0.077	11.5	14.2	0.31	9.5	1.7	2.1	1	1	1	2	2	2	0	Fusaric	acid	resistance	protein	family
FlgN	PF05130.12	gi|529077553|ref|YP_008376556.1|	-	0.1	13.1	25.6	0.17	12.4	7.7	3.6	1	1	1	2	2	2	0	FlgN	protein
DUF4201	PF13870.6	gi|529077553|ref|YP_008376556.1|	-	0.15	11.8	4.8	0.14	11.9	0.3	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4201)
Spc7	PF08317.11	gi|529077553|ref|YP_008376556.1|	-	0.21	10.4	30.8	0.39	9.6	9.9	2.6	1	1	2	3	3	3	0	Spc7	kinetochore	protein
Med30	PF11315.8	gi|529077553|ref|YP_008376556.1|	-	0.27	11.4	9.9	0.15	12.3	1.5	2.8	1	1	0	2	2	2	0	Mediator	complex	subunit	30
Mod_r	PF07200.13	gi|529077553|ref|YP_008376556.1|	-	0.29	11.2	20.3	1.3	9.1	3.7	3.4	2	2	0	2	2	2	0	Modifier	of	rudimentary	(Mod(r))	protein
YtxH	PF12732.7	gi|529077553|ref|YP_008376556.1|	-	0.38	11.3	36.5	6.3	7.4	1.5	5.1	1	1	2	3	3	2	0	YtxH-like	protein
DivIVA	PF05103.13	gi|529077553|ref|YP_008376556.1|	-	0.44	10.6	34.4	3.2	7.9	4.9	4.1	1	1	2	3	3	3	0	DivIVA	protein
Fib_alpha	PF08702.10	gi|529077553|ref|YP_008376556.1|	-	0.44	10.7	22.6	1.1	9.4	5.1	3.9	2	2	2	4	4	4	0	Fibrinogen	alpha/beta	chain	family
Alanine_zipper	PF11839.8	gi|529077553|ref|YP_008376556.1|	-	0.48	10.8	45.4	0.4	11.1	0.7	5.1	2	2	2	4	4	2	0	Alanine-zipper,	major	outer	membrane	lipoprotein
CheZ	PF04344.13	gi|529077553|ref|YP_008376556.1|	-	0.53	10.2	22.0	1.9	8.4	5.0	2.8	1	1	1	2	2	2	0	Chemotaxis	phosphatase,	CheZ
COG2	PF06148.11	gi|529077553|ref|YP_008376556.1|	-	0.59	10.2	27.6	3.7	7.6	3.7	4.6	2	2	2	4	4	4	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Mce4_CUP1	PF11887.8	gi|529077553|ref|YP_008376556.1|	-	0.6	9.5	19.7	0.48	9.8	1.8	2.9	1	1	1	3	3	3	0	Cholesterol	uptake	porter	CUP1	of	Mce4,	putative
Spectrin	PF00435.21	gi|529077553|ref|YP_008376556.1|	-	0.84	10.2	22.0	0.94	10.0	3.5	3.9	2	2	2	4	4	4	0	Spectrin	repeat
DUF2203	PF09969.9	gi|529077553|ref|YP_008376556.1|	-	0.9	10.3	25.3	2.2	9.0	3.2	3.7	1	1	2	4	4	4	0	Uncharacterized	conserved	protein	(DUF2203)
Laminin_I	PF06008.14	gi|529077553|ref|YP_008376556.1|	-	0.94	9.1	32.8	0.91	9.2	9.3	3.8	1	1	2	3	3	3	0	Laminin	Domain	I
TMPIT	PF07851.13	gi|529077553|ref|YP_008376556.1|	-	0.96	8.6	17.2	0.59	9.3	2.6	3.0	1	1	2	3	3	3	0	TMPIT-like	protein
DASH_Dad1	PF08649.10	gi|529077553|ref|YP_008376556.1|	-	1	9.6	9.3	11	6.3	1.2	4.4	3	1	1	4	4	4	0	DASH	complex	subunit	Dad1
GAS	PF13851.6	gi|529077553|ref|YP_008376556.1|	-	1.2	8.5	19.0	0.4	10.0	2.9	2.7	2	1	0	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
Fzo_mitofusin	PF04799.13	gi|529077553|ref|YP_008376556.1|	-	1.5	8.4	20.2	0.65	9.5	1.7	3.9	2	2	2	4	4	4	0	fzo-like	conserved	region
Sec34	PF04136.15	gi|529077553|ref|YP_008376556.1|	-	1.5	8.7	16.8	6.2	6.7	0.5	4.2	2	2	2	4	4	4	0	Sec34-like	family
DUF1759	PF03564.15	gi|529077553|ref|YP_008376556.1|	-	1.6	8.7	12.2	2.8	7.9	0.7	3.9	2	2	2	4	4	4	0	Protein	of	unknown	function	(DUF1759)
Aminotran_1_2	PF00155.21	gi|529077553|ref|YP_008376556.1|	-	2.3	7.3	7.3	4.7	6.3	0.6	2.8	1	1	1	3	3	3	0	Aminotransferase	class	I	and	II
Goodbye	PF17109.5	gi|529077553|ref|YP_008376556.1|	-	2.5	8.6	15.0	31	5.0	4.0	4.2	2	2	1	3	3	3	0	fungal	STAND	N-terminal	Goodbye	domain
HalX	PF08663.10	gi|529077553|ref|YP_008376556.1|	-	3.3	8.1	29.2	5.2	7.5	1.0	4.8	3	1	0	4	4	4	0	HalX	domain
Med9	PF07544.13	gi|529077553|ref|YP_008376556.1|	-	3.5	7.8	13.6	9.9	6.3	2.1	4.2	2	2	1	3	3	3	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
V_ATPase_I	PF01496.19	gi|529077553|ref|YP_008376556.1|	-	3.8	5.3	20.4	0.64	7.9	10.7	2.1	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
DUF812	PF05667.11	gi|529077553|ref|YP_008376556.1|	-	4.2	6.1	32.1	0.77	8.6	4.3	2.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF812)
RasGEF_N_2	PF14663.6	gi|529077553|ref|YP_008376556.1|	-	4.2	7.8	7.7	0.87	10.0	0.1	3.1	3	1	1	4	4	3	0	Rapamycin-insensitive	companion	of	mTOR	RasGEF_N	domain
APG17	PF04108.12	gi|529077553|ref|YP_008376556.1|	-	4.7	6.2	26.2	13	4.7	12.3	2.5	1	1	1	2	2	2	0	Autophagy	protein	Apg17
Cauli_AT	PF03233.13	gi|529077553|ref|YP_008376556.1|	-	5.3	6.9	16.6	13	5.7	4.1	3.7	1	1	3	4	4	4	0	Aphid	transmission	protein
Tweety	PF04906.13	gi|529077553|ref|YP_008376556.1|	-	5.8	5.5	15.2	3.8	6.1	2.4	2.6	1	1	2	3	3	3	0	Tweety
FlaC_arch	PF05377.11	gi|529077553|ref|YP_008376556.1|	-	6.3	7.3	26.9	1.8	9.0	1.1	5.7	3	3	2	5	5	5	0	Flagella	accessory	protein	C	(FlaC)
Rx_N	PF18052.1	gi|529077553|ref|YP_008376556.1|	-	6.5	7.1	25.4	0.096	13.0	1.5	4.4	2	2	2	4	4	4	0	Rx	N-terminal	domain
Golgin_A5	PF09787.9	gi|529077553|ref|YP_008376556.1|	-	8.8	5.7	29.9	3.3	7.1	10.1	2.2	1	1	1	2	2	2	0	Golgin	subfamily	A	member	5
YkyA	PF10368.9	gi|529077553|ref|YP_008376556.1|	-	9.8	5.8	35.9	3.6	7.2	8.1	3.4	2	2	1	3	3	3	0	Putative	cell-wall	binding	lipoprotein
TFIIB	PF00382.19	gi|529077554|ref|YP_008376557.1|	-	4.4e-38	129.2	0.2	8.8e-18	64.1	0.0	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|529077554|ref|YP_008376557.1|	-	2.1e-17	62.3	6.2	2.9e-17	61.9	5.1	1.9	2	0	0	2	2	2	1	TFIIB	zinc-binding
zf-ribbon_3	PF13248.6	gi|529077554|ref|YP_008376557.1|	-	0.00096	18.5	0.9	0.29	10.6	0.2	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
A2L_zn_ribbon	PF08792.10	gi|529077554|ref|YP_008376557.1|	-	0.0058	16.3	1.2	0.0098	15.6	1.2	1.3	1	0	0	1	1	1	1	A2L	zinc	ribbon	domain
Sigma70_r4	PF04545.16	gi|529077554|ref|YP_008376557.1|	-	0.015	14.8	0.1	0.33	10.5	0.1	2.8	2	0	0	2	2	2	0	Sigma-70,	region	4
DZR	PF12773.7	gi|529077554|ref|YP_008376557.1|	-	0.018	15.0	0.4	0.031	14.3	0.4	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
Anti-TRAP	PF15777.5	gi|529077554|ref|YP_008376557.1|	-	0.023	14.7	0.2	0.043	13.8	0.2	1.4	1	0	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
OrfB_Zn_ribbon	PF07282.11	gi|529077554|ref|YP_008376557.1|	-	0.028	14.3	0.8	0.073	13.0	0.8	1.6	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Cyclin_C	PF02984.19	gi|529077554|ref|YP_008376557.1|	-	0.03	14.4	0.0	1.4	9.0	0.0	2.2	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
RNA_POL_M_15KD	PF02150.16	gi|529077554|ref|YP_008376557.1|	-	0.2	11.5	0.8	0.4	10.6	0.8	1.5	1	0	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
Nudix_N_2	PF14803.6	gi|529077554|ref|YP_008376557.1|	-	0.22	11.5	1.5	0.77	9.7	1.5	1.9	1	1	0	1	1	1	0	Nudix	N-terminal
Auto_anti-p27	PF06677.12	gi|529077554|ref|YP_008376557.1|	-	0.27	11.4	1.5	0.48	10.6	1.5	1.4	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
HTH_Tnp_ISL3	PF13542.6	gi|529077554|ref|YP_008376557.1|	-	0.28	10.6	1.2	0.49	9.8	0.2	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
zf_UBZ	PF18439.1	gi|529077554|ref|YP_008376557.1|	-	0.53	9.9	1.8	17	5.1	0.1	2.3	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Zn-ribbon_8	PF09723.10	gi|529077554|ref|YP_008376557.1|	-	0.55	10.4	4.5	2.6	8.3	0.5	2.4	1	1	1	2	2	2	0	Zinc	ribbon	domain
Nnf1	PF03980.14	gi|529077554|ref|YP_008376557.1|	-	0.87	10.0	4.7	5.3	7.5	1.0	2.8	2	2	0	2	2	2	0	Nnf1
LPG_synthase_TM	PF03706.13	gi|529077555|ref|YP_008376558.1|	-	5.1e-37	128.0	34.8	6.6e-37	127.7	34.8	1.1	1	0	0	1	1	1	1	Lysylphosphatidylglycerol	synthase	TM	region
Glycos_transf_2	PF00535.26	gi|529077555|ref|YP_008376558.1|	-	1.1e-28	100.2	0.0	1.7e-28	99.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|529077555|ref|YP_008376558.1|	-	2.3e-10	40.8	0.9	2.3e-10	40.8	0.9	2.0	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|529077555|ref|YP_008376558.1|	-	0.0015	18.0	0.0	0.0023	17.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
DUF2653	PF10850.8	gi|529077555|ref|YP_008376558.1|	-	0.034	14.3	0.0	2.1	8.6	0.0	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2653)
Glyco_tranf_2_4	PF13704.6	gi|529077555|ref|YP_008376558.1|	-	0.047	14.2	0.2	0.11	13.0	0.1	1.7	2	0	0	2	2	2	0	Glycosyl	transferase	family	2
MFS_1	PF07690.16	gi|529077556|ref|YP_008376559.1|	-	6.5e-51	173.3	68.3	5.7e-39	134.0	37.7	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|529077556|ref|YP_008376559.1|	-	1.9e-10	40.2	9.9	4.2e-08	32.4	9.9	2.2	1	1	0	1	1	1	1	MFS_1	like	family
Sugar_tr	PF00083.24	gi|529077556|ref|YP_008376559.1|	-	8.3e-08	31.5	18.5	0.0007	18.6	4.5	3.3	2	2	1	3	3	3	2	Sugar	(and	other)	transporter
LacY_symp	PF01306.19	gi|529077556|ref|YP_008376559.1|	-	6.1e-07	28.6	6.0	6.1e-07	28.6	6.0	2.0	2	1	0	2	2	2	1	LacY	proton/sugar	symporter
TRI12	PF06609.13	gi|529077556|ref|YP_008376559.1|	-	0.0099	14.3	14.5	0.17	10.3	1.0	3.0	2	1	1	3	3	3	2	Fungal	trichothecene	efflux	pump	(TRI12)
OATP	PF03137.20	gi|529077556|ref|YP_008376559.1|	-	0.017	13.4	6.7	1.6	7.0	0.0	3.3	3	0	0	3	3	3	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
Radical_SAM	PF04055.21	gi|529077557|ref|YP_008376560.1|	-	4.3e-15	56.5	0.0	6.5e-14	52.6	0.0	2.8	4	0	0	4	4	4	1	Radical	SAM	superfamily
HHH	PF00633.23	gi|529077557|ref|YP_008376560.1|	-	5.6e-06	26.0	0.0	1.8e-05	24.4	0.0	1.9	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_3	PF12836.7	gi|529077557|ref|YP_008376560.1|	-	9.2e-05	22.6	0.0	0.00027	21.1	0.0	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|529077557|ref|YP_008376560.1|	-	0.089	13.4	0.0	0.21	12.2	0.0	1.6	1	0	0	1	1	1	0	Helix-hairpin-helix	domain
PsbU	PF06514.11	gi|529077557|ref|YP_008376560.1|	-	0.098	12.7	0.0	0.25	11.4	0.0	1.6	1	0	0	1	1	1	0	Photosystem	II	12	kDa	extrinsic	protein	(PsbU)
HSP20	PF00011.21	gi|529077558|ref|YP_008376561.1|	-	8.7e-06	25.8	0.0	1.5e-05	25.0	0.0	1.5	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
NUDIX	PF00293.28	gi|529077559|ref|YP_008376562.1|	-	1.9e-14	53.8	0.0	3e-14	53.2	0.0	1.3	1	0	0	1	1	1	1	NUDIX	domain
SVIP	PF15811.5	gi|529077560|ref|YP_008376563.1|	-	0.27	11.7	1.0	1.6	9.2	0.5	2.1	2	0	0	2	2	2	0	Small	VCP/p97-interacting	protein
zinc_ribbon_2	PF13240.6	gi|529077562|ref|YP_008376565.1|	-	0.00035	20.2	2.3	0.23	11.2	0.3	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|529077562|ref|YP_008376565.1|	-	0.00042	20.4	1.6	0.00063	19.8	1.6	1.3	1	0	0	1	1	1	1	Zinc	ribbon	domain
zf-tcix	PF14952.6	gi|529077562|ref|YP_008376565.1|	-	0.0013	18.3	1.6	0.27	10.9	0.3	2.3	2	0	0	2	2	2	2	Putative	treble-clef,	zinc-finger,	Zn-binding
DZR	PF12773.7	gi|529077562|ref|YP_008376565.1|	-	0.0015	18.5	0.6	0.0021	18.0	0.6	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
HypA	PF01155.19	gi|529077562|ref|YP_008376565.1|	-	0.0023	17.9	0.5	0.0026	17.8	0.5	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Nudix_N_2	PF14803.6	gi|529077562|ref|YP_008376565.1|	-	0.0029	17.5	2.5	0.072	13.0	0.1	2.2	2	0	0	2	2	2	1	Nudix	N-terminal
YhfH	PF14149.6	gi|529077562|ref|YP_008376565.1|	-	0.0041	17.0	1.5	0.75	9.8	0.1	2.2	2	0	0	2	2	2	1	YhfH-like	protein
HalOD2	PF18547.1	gi|529077562|ref|YP_008376565.1|	-	0.006	16.5	0.6	2.1	8.3	0.0	2.2	2	0	0	2	2	2	2	Halobacterial	output	domain	2
TF_Zn_Ribbon	PF08271.12	gi|529077562|ref|YP_008376565.1|	-	0.0061	16.1	1.8	0.95	9.0	0.2	2.2	2	0	0	2	2	2	2	TFIIB	zinc-binding
DUF1451	PF07295.11	gi|529077562|ref|YP_008376565.1|	-	0.0067	16.5	0.2	0.0075	16.3	0.2	1.1	1	0	0	1	1	1	1	Zinc-ribbon	containing	domain
PhnA_Zn_Ribbon	PF08274.12	gi|529077562|ref|YP_008376565.1|	-	0.0088	16.0	2.0	0.1	12.6	0.1	2.1	2	0	0	2	2	2	1	PhnA	Zinc-Ribbon
UPF0547	PF10571.9	gi|529077562|ref|YP_008376565.1|	-	0.011	15.8	2.0	0.093	12.8	0.2	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-ribbon_3	PF13248.6	gi|529077562|ref|YP_008376565.1|	-	0.017	14.5	1.3	1.5	8.4	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ISL3	PF14690.6	gi|529077562|ref|YP_008376565.1|	-	0.02	15.6	1.3	3.8	8.3	0.3	2.1	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-C2H2_4	PF13894.6	gi|529077562|ref|YP_008376565.1|	-	0.022	15.6	0.6	11	7.2	0.1	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
DUF1610	PF07754.11	gi|529077562|ref|YP_008376565.1|	-	0.022	14.7	3.4	0.1	12.6	3.4	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1610)
ADK_lid	PF05191.14	gi|529077562|ref|YP_008376565.1|	-	0.028	14.4	3.6	0.63	10.1	0.3	2.2	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
zinc_ribbon_4	PF13717.6	gi|529077562|ref|YP_008376565.1|	-	0.037	13.9	0.2	6.1	6.9	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|529077562|ref|YP_008376565.1|	-	0.041	13.7	2.3	3.4	7.5	0.3	2.2	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Zn_Tnp_IS91	PF14319.6	gi|529077562|ref|YP_008376565.1|	-	0.045	13.8	0.8	0.064	13.3	0.8	1.3	1	1	0	1	1	1	0	Transposase	zinc-binding	domain
zinc-ribbons_6	PF07191.12	gi|529077562|ref|YP_008376565.1|	-	0.048	13.7	1.8	0.11	12.5	1.8	1.6	1	1	0	1	1	1	0	zinc-ribbons
Prok-RING_1	PF14446.6	gi|529077562|ref|YP_008376565.1|	-	0.049	13.6	2.1	0.094	12.7	2.1	1.5	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
zf-RING_7	PF02591.15	gi|529077562|ref|YP_008376565.1|	-	0.064	13.4	1.3	1.4	9.2	0.3	2.2	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
zf-NADH-PPase	PF09297.11	gi|529077562|ref|YP_008376565.1|	-	0.078	12.6	2.4	1.4	8.7	0.2	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-C2H2_6	PF13912.6	gi|529077562|ref|YP_008376565.1|	-	0.12	12.4	1.4	6.7	6.8	0.3	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
OrfB_Zn_ribbon	PF07282.11	gi|529077562|ref|YP_008376565.1|	-	0.17	11.8	2.6	0.68	9.9	2.6	1.8	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
Ribosomal_L33	PF00471.20	gi|529077562|ref|YP_008376565.1|	-	0.27	11.7	2.5	0.63	10.5	2.5	1.7	1	1	0	1	1	1	0	Ribosomal	protein	L33
zf_UBZ	PF18439.1	gi|529077562|ref|YP_008376565.1|	-	0.27	10.8	2.2	12	5.6	0.1	2.2	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-C2H2	PF00096.26	gi|529077562|ref|YP_008376565.1|	-	0.27	11.8	1.3	10	6.8	0.1	2.3	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
DUF983	PF06170.12	gi|529077562|ref|YP_008376565.1|	-	0.29	11.6	2.9	8.8	6.8	0.2	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF983)
zf-dskA_traR	PF01258.17	gi|529077562|ref|YP_008376565.1|	-	0.35	10.8	6.2	2.8	8.0	0.7	2.1	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
zf-C2H2_3	PF13878.6	gi|529077562|ref|YP_008376565.1|	-	0.37	10.6	3.7	7.3	6.5	0.3	2.1	1	1	1	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
DNA_RNApol_7kD	PF03604.13	gi|529077562|ref|YP_008376565.1|	-	0.55	10.0	6.0	0.69	9.6	0.6	2.2	1	1	1	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
DHH	PF01368.20	gi|529077563|ref|YP_008376566.1|	-	1.6e-10	41.1	0.0	2.8e-10	40.3	0.0	1.4	1	0	0	1	1	1	1	DHH	family
DHHA1	PF02272.19	gi|529077563|ref|YP_008376566.1|	-	1.2e-08	35.5	0.6	2.5e-08	34.4	0.6	1.5	1	0	0	1	1	1	1	DHHA1	domain
NAD_binding_10	PF13460.6	gi|529077564|ref|YP_008376567.1|	-	7.5e-16	58.6	0.1	1e-15	58.1	0.1	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
Epimerase	PF01370.21	gi|529077564|ref|YP_008376567.1|	-	5.8e-11	42.3	0.0	1.8e-10	40.7	0.0	1.7	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
TrkA_N	PF02254.18	gi|529077564|ref|YP_008376567.1|	-	1.3e-07	31.9	0.2	2.2e-07	31.1	0.2	1.4	1	0	0	1	1	1	1	TrkA-N	domain
3Beta_HSD	PF01073.19	gi|529077564|ref|YP_008376567.1|	-	1.2e-06	27.7	0.0	2.5e-06	26.7	0.0	1.5	2	0	0	2	2	2	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
F420_oxidored	PF03807.17	gi|529077564|ref|YP_008376567.1|	-	1.2e-05	25.8	0.2	2e-05	25.1	0.2	1.4	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Pyr_redox	PF00070.27	gi|529077564|ref|YP_008376567.1|	-	0.00021	21.8	0.3	0.00045	20.7	0.3	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GDP_Man_Dehyd	PF16363.5	gi|529077564|ref|YP_008376567.1|	-	0.00072	19.0	0.0	0.0097	15.3	0.0	2.2	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
DUF1731	PF08338.11	gi|529077564|ref|YP_008376567.1|	-	0.00092	19.0	0.2	0.0027	17.5	0.0	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1731)
ApbA	PF02558.16	gi|529077564|ref|YP_008376567.1|	-	0.00096	18.8	0.1	0.0015	18.2	0.1	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
RmlD_sub_bind	PF04321.17	gi|529077564|ref|YP_008376567.1|	-	0.002	17.3	0.1	0.0046	16.1	0.1	1.5	2	0	0	2	2	2	1	RmlD	substrate	binding	domain
NmrA	PF05368.13	gi|529077564|ref|YP_008376567.1|	-	0.0023	17.5	0.1	0.0031	17.1	0.1	1.2	1	0	0	1	1	1	1	NmrA-like	family
NAD_binding_2	PF03446.15	gi|529077564|ref|YP_008376567.1|	-	0.0045	17.2	0.0	0.0069	16.6	0.0	1.3	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
UDPG_MGDP_dh_N	PF03721.14	gi|529077564|ref|YP_008376567.1|	-	0.0049	16.5	0.2	0.0078	15.8	0.2	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Pyr_redox_2	PF07992.14	gi|529077564|ref|YP_008376567.1|	-	0.015	14.6	0.5	0.021	14.1	0.5	1.2	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Sacchrp_dh_NADP	PF03435.18	gi|529077564|ref|YP_008376567.1|	-	0.017	15.4	0.1	0.028	14.7	0.1	1.4	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
AlaDh_PNT_C	PF01262.21	gi|529077564|ref|YP_008376567.1|	-	0.024	13.9	0.7	0.036	13.4	0.7	1.2	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
adh_short	PF00106.25	gi|529077564|ref|YP_008376567.1|	-	0.03	13.8	0.1	0.061	12.8	0.1	1.4	1	0	0	1	1	1	0	short	chain	dehydrogenase
3HCDH_N	PF02737.18	gi|529077564|ref|YP_008376567.1|	-	0.036	13.9	0.1	0.059	13.3	0.1	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ThiF	PF00899.21	gi|529077564|ref|YP_008376567.1|	-	0.1	11.9	0.7	0.17	11.2	0.7	1.3	1	0	0	1	1	1	0	ThiF	family
adh_short_C2	PF13561.6	gi|529077564|ref|YP_008376567.1|	-	0.11	12.1	0.7	0.24	10.9	0.3	1.7	2	0	0	2	2	2	0	Enoyl-(Acyl	carrier	protein)	reductase
IlvN	PF07991.12	gi|529077564|ref|YP_008376567.1|	-	0.12	11.9	0.1	0.18	11.4	0.1	1.3	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
Rossmann-like	PF10727.9	gi|529077564|ref|YP_008376567.1|	-	0.18	11.7	1.2	0.36	10.7	1.2	1.5	1	1	0	1	1	1	0	Rossmann-like	domain
DUF3412	PF11892.8	gi|529077565|ref|YP_008376568.1|	-	0.14	12.2	0.0	5.4	7.1	0.0	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3412)
Phosphodiest	PF01663.22	gi|529077566|ref|YP_008376569.1|	-	1e-60	206.3	0.3	1.2e-60	206.1	0.3	1.0	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF2063	PF09836.9	gi|529077566|ref|YP_008376569.1|	-	0.15	12.4	0.3	0.27	11.5	0.3	1.5	1	0	0	1	1	1	0	Putative	DNA-binding	domain
Sulfatase	PF00884.23	gi|529077566|ref|YP_008376569.1|	-	0.41	10.0	3.1	0.47	9.8	0.7	2.1	2	0	0	2	2	2	0	Sulfatase
Pyrophosphatase	PF00719.19	gi|529077568|ref|YP_008376571.1|	-	9.6e-52	175.0	0.6	1.1e-51	174.8	0.6	1.0	1	0	0	1	1	1	1	Inorganic	pyrophosphatase
PadR	PF03551.14	gi|529077569|ref|YP_008376572.1|	-	5.2e-15	55.2	0.7	7.5e-15	54.7	0.7	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.6	gi|529077569|ref|YP_008376572.1|	-	0.00059	20.3	0.0	0.00089	19.7	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.6	gi|529077569|ref|YP_008376572.1|	-	0.00088	19.2	0.1	0.0015	18.5	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
Rio2_N	PF09202.11	gi|529077569|ref|YP_008376572.1|	-	0.0058	16.8	0.2	0.0077	16.4	0.2	1.4	1	1	0	1	1	1	1	Rio2,	N-terminal
DUF1495	PF07381.11	gi|529077569|ref|YP_008376572.1|	-	0.14	12.0	0.0	0.27	11.1	0.0	1.6	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
DNA_pol3_alpha	PF07733.12	gi|529077570|ref|YP_008376573.1|	-	0.019	14.5	0.1	0.027	14.1	0.1	1.2	1	0	0	1	1	1	0	Bacterial	DNA	polymerase	III	alpha	NTPase	domain
Phage_int_SAM_1	PF02899.17	gi|529077570|ref|YP_008376573.1|	-	0.11	12.8	0.1	0.49	10.7	0.1	2.0	1	1	1	2	2	2	0	Phage	integrase,	N-terminal	SAM-like	domain
RVT_3	PF13456.6	gi|529077571|ref|YP_008376574.1|	-	5.6e-27	94.0	0.0	1e-26	93.2	0.0	1.4	2	0	0	2	2	2	1	Reverse	transcriptase-like
RNase_H	PF00075.24	gi|529077571|ref|YP_008376574.1|	-	1.1e-13	51.6	0.0	3.1e-13	50.1	0.0	1.7	1	1	0	1	1	1	1	RNase	H
PQQ_3	PF13570.6	gi|529077571|ref|YP_008376574.1|	-	0.13	12.8	0.2	0.13	12.8	0.2	2.0	2	0	0	2	2	2	0	PQQ-like	domain
HTH_24	PF13412.6	gi|529077572|ref|YP_008376575.1|	-	2.4e-12	46.2	0.0	5.4e-12	45.1	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrkA_C	PF02080.21	gi|529077572|ref|YP_008376575.1|	-	2.9e-12	46.2	0.1	5.9e-12	45.2	0.1	1.5	1	0	0	1	1	1	1	TrkA-C	domain
HTH_AsnC-type	PF13404.6	gi|529077572|ref|YP_008376575.1|	-	1.1e-09	38.0	0.6	2.1e-09	37.1	0.1	1.8	2	0	0	2	2	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|529077572|ref|YP_008376575.1|	-	9.5e-08	31.9	0.1	1.2e-06	28.4	0.0	2.6	3	0	0	3	3	2	1	HTH	domain
MarR_2	PF12802.7	gi|529077572|ref|YP_008376575.1|	-	9.4e-06	25.4	0.1	2.2e-05	24.2	0.1	1.7	1	1	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|529077572|ref|YP_008376575.1|	-	1.1e-05	25.2	0.0	2.2e-05	24.2	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_DeoR	PF08220.12	gi|529077572|ref|YP_008376575.1|	-	5.7e-05	22.8	0.0	0.00014	21.5	0.0	1.7	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_28	PF13518.6	gi|529077572|ref|YP_008376575.1|	-	7.8e-05	22.7	0.3	0.00027	21.0	0.1	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|529077572|ref|YP_008376575.1|	-	0.0001	22.2	0.0	0.00019	21.3	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|529077572|ref|YP_008376575.1|	-	0.00018	21.5	0.0	0.00041	20.4	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|529077572|ref|YP_008376575.1|	-	0.00028	21.2	0.0	0.0006	20.1	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|529077572|ref|YP_008376575.1|	-	0.0006	20.0	0.0	0.0012	19.0	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_IclR	PF09339.10	gi|529077572|ref|YP_008376575.1|	-	0.00078	19.2	0.0	0.0018	18.0	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|529077572|ref|YP_008376575.1|	-	0.0014	18.5	0.0	0.0089	16.0	0.0	2.3	3	0	0	3	3	2	1	Crp-like	helix-turn-helix	domain
GntR	PF00392.21	gi|529077572|ref|YP_008376575.1|	-	0.004	16.8	0.0	0.015	15.0	0.0	1.9	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_Tnp_ISL3	PF13542.6	gi|529077572|ref|YP_008376575.1|	-	0.0078	15.6	0.0	0.021	14.2	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_23	PF13384.6	gi|529077572|ref|YP_008376575.1|	-	0.0099	15.7	0.3	0.031	14.1	0.0	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|529077572|ref|YP_008376575.1|	-	0.014	15.4	0.0	0.056	13.5	0.0	2.1	2	0	0	2	2	2	0	Winged	helix-turn	helix
HTH_1	PF00126.27	gi|529077572|ref|YP_008376575.1|	-	0.02	14.8	0.1	0.071	13.1	0.0	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Sigma70_r4_2	PF08281.12	gi|529077572|ref|YP_008376575.1|	-	0.021	14.5	0.0	0.082	12.6	0.0	1.9	2	0	0	2	2	2	0	Sigma-70,	region	4
HrcA_DNA-bdg	PF03444.15	gi|529077572|ref|YP_008376575.1|	-	0.025	14.2	0.0	0.047	13.3	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
HTH_36	PF13730.6	gi|529077572|ref|YP_008376575.1|	-	0.054	13.5	0.0	0.17	11.8	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_Tnp_Tc3_2	PF01498.18	gi|529077572|ref|YP_008376575.1|	-	0.074	13.3	0.1	0.3	11.4	0.0	2.0	3	0	0	3	3	1	0	Transposase
FUR	PF01475.19	gi|529077572|ref|YP_008376575.1|	-	0.082	13.1	0.0	0.14	12.3	0.0	1.3	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
HTH_10	PF04967.12	gi|529077572|ref|YP_008376575.1|	-	0.099	12.5	0.1	0.26	11.1	0.0	1.7	2	0	0	2	2	1	0	HTH	DNA	binding	domain
TrmB	PF01978.19	gi|529077572|ref|YP_008376575.1|	-	0.11	12.3	0.0	0.26	11.2	0.0	1.6	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_30	PF13556.6	gi|529077572|ref|YP_008376575.1|	-	0.13	12.0	0.1	0.3	10.9	0.1	1.6	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
TrkA_N	PF02254.18	gi|529077573|ref|YP_008376576.1|	-	2.9e-26	92.0	2.5	4.7e-26	91.3	2.5	1.4	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|529077573|ref|YP_008376576.1|	-	5e-13	48.7	0.6	4.3e-12	45.7	0.1	2.2	2	0	0	2	2	2	1	TrkA-C	domain
F420_oxidored	PF03807.17	gi|529077573|ref|YP_008376576.1|	-	7.4e-06	26.5	0.6	1.9e-05	25.2	0.2	1.9	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
Sacchrp_dh_NADP	PF03435.18	gi|529077573|ref|YP_008376576.1|	-	3.1e-05	24.3	0.4	4.4e-05	23.7	0.4	1.3	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
XdhC_C	PF13478.6	gi|529077573|ref|YP_008376576.1|	-	0.00011	22.7	0.1	0.00017	22.1	0.1	1.3	1	0	0	1	1	1	1	XdhC	Rossmann	domain
NAD_binding_7	PF13241.6	gi|529077573|ref|YP_008376576.1|	-	0.00014	22.3	0.5	0.00023	21.6	0.2	1.5	2	0	0	2	2	1	1	Putative	NAD(P)-binding
NAD_binding_10	PF13460.6	gi|529077573|ref|YP_008376576.1|	-	0.00039	20.4	1.1	0.00076	19.4	0.6	1.6	1	1	0	2	2	2	1	NAD(P)H-binding
Pyr_redox	PF00070.27	gi|529077573|ref|YP_008376576.1|	-	0.0011	19.4	0.1	0.023	15.3	0.1	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|529077573|ref|YP_008376576.1|	-	0.0015	18.4	0.3	0.0022	17.9	0.3	1.2	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|529077573|ref|YP_008376576.1|	-	0.0046	16.3	2.5	0.0048	16.2	1.2	1.5	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Shikimate_DH	PF01488.20	gi|529077573|ref|YP_008376576.1|	-	0.0053	16.8	0.2	0.01	15.9	0.2	1.5	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
UDPG_MGDP_dh_N	PF03721.14	gi|529077573|ref|YP_008376576.1|	-	0.0065	16.1	0.1	0.01	15.5	0.1	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
ATPgrasp_N	PF18130.1	gi|529077573|ref|YP_008376576.1|	-	0.0084	16.6	0.7	0.017	15.7	0.7	1.6	1	0	0	1	1	1	1	ATP-grasp	N-terminal	domain
PglD_N	PF17836.1	gi|529077573|ref|YP_008376576.1|	-	0.014	16.0	0.2	0.038	14.6	0.2	1.8	1	0	0	1	1	1	0	PglD	N-terminal	domain
NmrA	PF05368.13	gi|529077573|ref|YP_008376576.1|	-	0.02	14.5	0.2	0.028	14.0	0.2	1.3	1	0	0	1	1	1	0	NmrA-like	family
NAD_binding_2	PF03446.15	gi|529077573|ref|YP_008376576.1|	-	0.024	14.8	0.0	0.032	14.4	0.0	1.3	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
GFO_IDH_MocA	PF01408.22	gi|529077573|ref|YP_008376576.1|	-	0.029	15.2	0.4	0.15	12.9	0.3	2.0	1	1	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
PEP-utilizers	PF00391.23	gi|529077573|ref|YP_008376576.1|	-	0.065	13.0	0.0	0.2	11.4	0.0	1.8	1	0	0	1	1	1	0	PEP-utilising	enzyme,	mobile	domain
2-Hacid_dh_C	PF02826.19	gi|529077573|ref|YP_008376576.1|	-	0.075	12.4	0.0	0.13	11.6	0.0	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ThiF	PF00899.21	gi|529077573|ref|YP_008376576.1|	-	0.079	12.3	1.6	3.9	6.8	0.1	2.1	1	1	1	2	2	2	0	ThiF	family
ApbA	PF02558.16	gi|529077573|ref|YP_008376576.1|	-	0.091	12.4	0.1	0.14	11.8	0.1	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
ADH_zinc_N	PF00107.26	gi|529077573|ref|YP_008376576.1|	-	0.099	12.6	0.1	8.4	6.4	0.1	2.1	1	1	1	2	2	2	0	Zinc-binding	dehydrogenase
TrkH	PF02386.16	gi|529077574|ref|YP_008376577.1|	-	1e-68	232.0	8.1	1.5e-68	231.5	8.1	1.1	1	0	0	1	1	1	1	Cation	transport	protein
PHBC_N	PF12551.8	gi|529077574|ref|YP_008376577.1|	-	0.069	12.9	0.2	11	5.9	0.0	3.3	2	0	0	2	2	2	0	Poly-beta-hydroxybutyrate	polymerase	N	terminal
Gly-zipper_YMGG	PF13441.6	gi|529077574|ref|YP_008376577.1|	-	0.84	9.4	6.6	3.4	7.5	0.1	2.9	2	0	0	2	2	2	0	YMGG-like	Gly-zipper
Trep_Strep	PF09605.10	gi|529077574|ref|YP_008376577.1|	-	2.6	8.0	19.0	0.063	13.3	1.4	3.6	4	0	0	4	4	4	0	Hypothetical	bacterial	integral	membrane	protein	(Trep_Strep)
TrkA_N	PF02254.18	gi|529077575|ref|YP_008376578.1|	-	1.6e-25	89.6	1.3	3.2e-25	88.7	1.3	1.5	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|529077575|ref|YP_008376578.1|	-	2.9e-12	46.2	0.3	1e-11	44.5	0.0	2.1	2	0	0	2	2	2	1	TrkA-C	domain
NAD_binding_10	PF13460.6	gi|529077575|ref|YP_008376578.1|	-	1.8e-06	27.9	0.1	3.4e-06	27.1	0.1	1.5	1	0	0	1	1	1	1	NAD(P)H-binding
Shikimate_DH	PF01488.20	gi|529077575|ref|YP_008376578.1|	-	1.6e-05	25.0	0.4	2.6e-05	24.3	0.3	1.5	1	1	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|529077575|ref|YP_008376578.1|	-	2.5e-05	24.6	0.3	3.9e-05	23.9	0.3	1.3	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
NmrA	PF05368.13	gi|529077575|ref|YP_008376578.1|	-	0.00019	21.1	0.3	0.00058	19.5	0.2	1.7	1	1	1	2	2	2	1	NmrA-like	family
DapB_N	PF01113.20	gi|529077575|ref|YP_008376578.1|	-	0.0018	18.4	0.2	0.0028	17.8	0.2	1.5	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
AlaDh_PNT_C	PF01262.21	gi|529077575|ref|YP_008376578.1|	-	0.0038	16.6	0.7	0.0055	16.0	0.7	1.2	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
3HCDH_N	PF02737.18	gi|529077575|ref|YP_008376578.1|	-	0.0082	16.0	0.1	0.013	15.4	0.1	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|529077575|ref|YP_008376578.1|	-	0.01	16.2	0.1	0.019	15.4	0.1	1.4	1	0	0	1	1	1	0	Putative	NAD(P)-binding
NAD_binding_8	PF13450.6	gi|529077575|ref|YP_008376578.1|	-	0.016	15.4	0.0	0.043	14.1	0.0	1.7	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|529077575|ref|YP_008376578.1|	-	0.036	13.6	0.0	0.047	13.3	0.0	1.4	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
MoeA_C	PF03454.15	gi|529077575|ref|YP_008376578.1|	-	0.042	14.0	0.0	0.11	12.7	0.0	1.7	1	0	0	1	1	1	0	MoeA	C-terminal	region	(domain	IV)
Pyr_redox_2	PF07992.14	gi|529077575|ref|YP_008376578.1|	-	0.056	12.7	0.1	0.071	12.3	0.1	1.3	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Usp	PF00582.26	gi|529077576|ref|YP_008376579.1|	-	8e-09	36.1	13.6	0.00014	22.4	4.0	3.3	2	1	0	2	2	2	2	Universal	stress	protein	family
baeRF_family10	PF18854.1	gi|529077576|ref|YP_008376579.1|	-	0.26	11.5	7.3	0.42	10.9	0.1	2.4	2	0	0	2	2	2	0	Bacterial	archaeo-eukaryotic	release	factor	family	10
TrkH	PF02386.16	gi|529077577|ref|YP_008376580.1|	-	1.4e-10	40.3	0.0	1.4e-10	40.2	0.0	1.0	1	0	0	1	1	1	1	Cation	transport	protein
TrkA_N	PF02254.18	gi|529077578|ref|YP_008376581.1|	-	1.9e-28	99.0	2.2	2.4e-28	98.7	1.0	1.7	2	0	0	2	2	2	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|529077578|ref|YP_008376581.1|	-	1.3e-16	60.1	1.1	7.7e-15	54.5	0.1	2.4	2	0	0	2	2	2	1	TrkA-C	domain
Sacchrp_dh_NADP	PF03435.18	gi|529077578|ref|YP_008376581.1|	-	8e-07	29.4	0.1	1.3e-06	28.7	0.1	1.4	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
F420_oxidored	PF03807.17	gi|529077578|ref|YP_008376581.1|	-	9.5e-07	29.3	0.7	2.9e-06	27.7	0.1	2.1	2	1	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_7	PF13241.6	gi|529077578|ref|YP_008376581.1|	-	5.4e-06	26.8	0.6	1.6e-05	25.3	0.2	1.8	2	0	0	2	2	2	1	Putative	NAD(P)-binding
Pyr_redox	PF00070.27	gi|529077578|ref|YP_008376581.1|	-	1.5e-05	25.4	0.1	0.0015	19.1	0.1	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_10	PF13460.6	gi|529077578|ref|YP_008376581.1|	-	3.6e-05	23.7	1.7	8e-05	22.6	1.2	1.9	1	1	1	2	2	2	1	NAD(P)H-binding
Shikimate_DH	PF01488.20	gi|529077578|ref|YP_008376581.1|	-	9.7e-05	22.4	0.5	0.0002	21.4	0.2	1.6	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
XdhC_C	PF13478.6	gi|529077578|ref|YP_008376581.1|	-	0.00028	21.4	0.1	0.00046	20.7	0.1	1.4	1	0	0	1	1	1	1	XdhC	Rossmann	domain
3HCDH_N	PF02737.18	gi|529077578|ref|YP_008376581.1|	-	0.00056	19.8	0.1	0.00083	19.3	0.1	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|529077578|ref|YP_008376581.1|	-	0.0006	19.2	2.7	0.0012	18.1	0.8	1.9	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox_2	PF07992.14	gi|529077578|ref|YP_008376581.1|	-	0.0037	16.5	1.1	0.0051	16.1	0.8	1.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GFO_IDH_MocA	PF01408.22	gi|529077578|ref|YP_008376581.1|	-	0.0067	17.2	0.1	0.015	16.1	0.1	1.8	1	1	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
NAD_binding_2	PF03446.15	gi|529077578|ref|YP_008376581.1|	-	0.0092	16.2	0.0	0.02	15.1	0.0	1.6	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
UDPG_MGDP_dh_N	PF03721.14	gi|529077578|ref|YP_008376581.1|	-	0.015	14.9	0.2	0.038	13.5	0.1	1.8	1	1	1	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NmrA	PF05368.13	gi|529077578|ref|YP_008376581.1|	-	0.016	14.8	0.1	0.025	14.1	0.1	1.3	1	0	0	1	1	1	0	NmrA-like	family
2-Hacid_dh_C	PF02826.19	gi|529077578|ref|YP_008376581.1|	-	0.03	13.7	0.0	0.047	13.0	0.0	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Peripla_BP_3	PF13377.6	gi|529077578|ref|YP_008376581.1|	-	0.031	14.6	0.1	0.047	14.0	0.1	1.3	1	0	0	1	1	1	0	Periplasmic	binding	protein-like	domain
ADH_zinc_N	PF00107.26	gi|529077578|ref|YP_008376581.1|	-	0.033	14.2	0.0	5	7.1	0.0	2.2	1	1	1	2	2	2	0	Zinc-binding	dehydrogenase
ApbA	PF02558.16	gi|529077578|ref|YP_008376581.1|	-	0.094	12.4	0.1	0.14	11.7	0.1	1.4	1	1	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Epimerase	PF01370.21	gi|529077578|ref|YP_008376581.1|	-	0.099	12.1	0.1	0.17	11.3	0.1	1.4	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
ThiF	PF00899.21	gi|529077578|ref|YP_008376581.1|	-	0.15	11.4	1.3	8.1	5.7	0.1	2.1	1	1	1	2	2	2	0	ThiF	family
TrkH	PF02386.16	gi|529077579|ref|YP_008376582.1|	-	4.9e-75	252.9	13.2	6.5e-74	249.2	13.2	2.0	1	1	0	1	1	1	1	Cation	transport	protein
TFIIB	PF00382.19	gi|529077581|ref|YP_008376584.1|	-	3.1e-47	158.5	1.9	7.7e-26	89.9	0.2	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|529077581|ref|YP_008376584.1|	-	2.2e-19	68.7	3.6	4.6e-19	67.7	3.6	1.6	1	0	0	1	1	1	1	TFIIB	zinc-binding
A2L_zn_ribbon	PF08792.10	gi|529077581|ref|YP_008376584.1|	-	0.0098	15.6	0.7	0.024	14.3	0.7	1.7	1	0	0	1	1	1	1	A2L	zinc	ribbon	domain
Lar_restr_allev	PF14354.6	gi|529077581|ref|YP_008376584.1|	-	0.013	15.9	1.1	0.028	14.8	0.4	1.9	2	0	0	2	2	2	0	Restriction	alleviation	protein	Lar
PhnA_Zn_Ribbon	PF08274.12	gi|529077581|ref|YP_008376584.1|	-	0.015	15.3	2.3	0.031	14.2	2.3	1.5	1	0	0	1	1	1	0	PhnA	Zinc-Ribbon
TerY_C	PF15616.6	gi|529077581|ref|YP_008376584.1|	-	0.018	15.1	0.1	0.042	13.9	0.1	1.5	1	0	0	1	1	1	0	TerY-C	metal	binding	domain
Zn_Tnp_IS1595	PF12760.7	gi|529077581|ref|YP_008376584.1|	-	0.045	13.7	0.0	0.1	12.6	0.0	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Cyclin_C	PF02984.19	gi|529077581|ref|YP_008376584.1|	-	0.051	13.7	0.0	0.49	10.5	0.0	2.1	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
Sigma70_r4	PF04545.16	gi|529077581|ref|YP_008376584.1|	-	0.053	13.1	2.4	0.37	10.3	0.1	3.4	3	1	1	4	4	4	0	Sigma-70,	region	4
OrfB_Zn_ribbon	PF07282.11	gi|529077581|ref|YP_008376584.1|	-	0.098	12.6	1.0	0.37	10.7	0.6	2.1	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
HTH_23	PF13384.6	gi|529077581|ref|YP_008376584.1|	-	0.11	12.3	0.7	0.75	9.7	0.1	2.7	3	0	0	3	3	3	0	Homeodomain-like	domain
zf-ribbon_3	PF13248.6	gi|529077581|ref|YP_008376584.1|	-	0.27	10.7	2.5	1.3	8.5	2.5	2.0	1	1	0	1	1	1	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|529077581|ref|YP_008376584.1|	-	0.39	10.9	4.2	1.5	9.0	0.7	2.5	1	1	0	2	2	2	0	Zinc	ribbon	domain
Trm112p	PF03966.16	gi|529077581|ref|YP_008376584.1|	-	1.2	9.8	3.9	32	5.2	3.9	2.7	1	1	0	1	1	1	0	Trm112p-like	protein
zf-C4_Topoisom	PF01396.19	gi|529077581|ref|YP_008376584.1|	-	1.3	8.9	3.1	0.49	10.2	0.3	1.8	1	1	1	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
DUF3082	PF11282.8	gi|529077582|ref|YP_008376585.1|	-	1	9.6	6.9	8.2	6.8	5.5	2.6	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3082)
DUF3951	PF13131.6	gi|529077582|ref|YP_008376585.1|	-	1.4	9.2	4.0	23	5.3	0.0	3.1	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3951)
HTH_20	PF12840.7	gi|529077583|ref|YP_008376586.1|	-	5.7e-07	29.5	0.5	7.7e-07	29.1	0.5	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|529077583|ref|YP_008376586.1|	-	0.0013	18.7	0.0	0.0023	17.9	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.7	gi|529077583|ref|YP_008376586.1|	-	0.0014	18.5	0.0	0.0025	17.7	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.6	gi|529077583|ref|YP_008376586.1|	-	0.0035	17.1	3.3	0.0096	15.7	3.3	1.7	1	1	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
PadR	PF03551.14	gi|529077583|ref|YP_008376586.1|	-	0.025	14.5	0.0	0.034	14.1	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_Crp_2	PF13545.6	gi|529077583|ref|YP_008376586.1|	-	0.042	13.8	0.0	0.065	13.2	0.0	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
TrmB	PF01978.19	gi|529077583|ref|YP_008376586.1|	-	0.044	13.7	0.0	0.064	13.2	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|529077583|ref|YP_008376586.1|	-	0.055	14.0	0.0	0.081	13.4	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.10	gi|529077583|ref|YP_008376586.1|	-	0.1	12.4	0.0	0.16	11.8	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|529077583|ref|YP_008376586.1|	-	0.13	11.9	0.0	0.27	10.8	0.0	1.7	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_36	PF13730.6	gi|529077583|ref|YP_008376586.1|	-	0.18	11.8	0.0	0.26	11.3	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
Chlor_dismutase	PF06778.12	gi|529077584|ref|YP_008376587.1|	-	3.3e-67	225.8	0.2	1e-66	224.3	0.1	1.9	2	0	0	2	2	2	1	Chlorite	dismutase
ABM	PF03992.16	gi|529077584|ref|YP_008376587.1|	-	4.2e-09	36.4	5.9	4.3e-09	36.4	0.1	3.3	3	0	0	3	3	3	1	Antibiotic	biosynthesis	monooxygenase
His_Phos_1	PF00300.22	gi|529077585|ref|YP_008376588.1|	-	0.017	14.8	1.4	0.02	14.6	1.4	1.0	1	0	0	1	1	1	0	Histidine	phosphatase	superfamily	(branch	1)
RIG-I_C-RD	PF11648.8	gi|529077585|ref|YP_008376588.1|	-	0.067	13.4	0.0	0.12	12.6	0.0	1.5	1	1	0	1	1	1	0	C-terminal	domain	of	RIG-I
NifU_N	PF01592.16	gi|529077586|ref|YP_008376589.1|	-	2e-27	95.9	0.1	2.3e-27	95.7	0.1	1.0	1	0	0	1	1	1	1	NifU-like	N	terminal	domain
bPH_3	PF14470.6	gi|529077587|ref|YP_008376590.1|	-	0.0091	16.3	0.0	0.017	15.5	0.0	1.5	1	0	0	1	1	1	1	Bacterial	PH	domain
TetR_C_33	PF13305.6	gi|529077587|ref|YP_008376590.1|	-	0.02	15.6	3.3	0.02	15.6	3.3	2.5	2	1	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
Lebercilin	PF15619.6	gi|529077587|ref|YP_008376590.1|	-	0.02	14.6	2.8	0.02	14.6	2.8	1.8	2	0	0	2	2	2	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
Peptidase_S51	PF03575.17	gi|529077587|ref|YP_008376590.1|	-	0.023	14.3	0.0	0.042	13.5	0.0	1.4	1	0	0	1	1	1	0	Peptidase	family	S51
MTBP_N	PF14918.6	gi|529077587|ref|YP_008376590.1|	-	0.18	11.2	2.9	0.33	10.4	2.9	1.4	1	0	0	1	1	1	0	MDM2-binding
Phasin	PF05597.11	gi|529077587|ref|YP_008376590.1|	-	2.2	8.3	10.7	0.85	9.6	2.4	3.6	2	1	2	4	4	4	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
Aminotran_5	PF00266.19	gi|529077588|ref|YP_008376591.1|	-	4.9e-148	493.0	0.1	5.6e-148	492.8	0.1	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.17	gi|529077588|ref|YP_008376591.1|	-	5.1e-09	35.9	1.4	7.8e-09	35.3	1.4	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.21	gi|529077588|ref|YP_008376591.1|	-	4e-07	29.6	0.1	3.2e-06	26.7	0.2	1.9	2	0	0	2	2	2	1	Beta-eliminating	lyase
Cys_Met_Meta_PP	PF01053.20	gi|529077588|ref|YP_008376591.1|	-	9.9e-05	21.0	0.0	0.00015	20.5	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
SelA	PF03841.13	gi|529077588|ref|YP_008376591.1|	-	0.027	13.5	0.1	0.095	11.7	0.1	1.7	1	1	0	1	1	1	0	L-seryl-tRNA	selenium	transferase
T2SSM	PF04612.12	gi|529077589|ref|YP_008376592.1|	-	4.2	7.4	5.0	6.3	6.8	1.0	2.0	2	0	0	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	M
DoxX	PF07681.12	gi|529077590|ref|YP_008376593.1|	-	4e-09	36.9	6.7	4e-09	36.9	6.7	2.1	2	0	0	2	2	2	1	DoxX
DoxD	PF04173.13	gi|529077590|ref|YP_008376593.1|	-	6.5e-08	32.7	8.6	1e-07	32.0	8.6	1.3	1	1	0	1	1	1	1	TQO	small	subunit	DoxD
NUDIX	PF00293.28	gi|529077591|ref|YP_008376594.1|	-	2.6e-11	43.7	0.1	4.3e-11	43.0	0.1	1.3	1	0	0	1	1	1	1	NUDIX	domain
AA_kinase	PF00696.28	gi|529077592|ref|YP_008376595.1|	-	2.3e-47	161.6	1.7	3.9e-47	160.9	1.7	1.3	1	0	0	1	1	1	1	Amino	acid	kinase	family
ACT_7	PF13840.6	gi|529077592|ref|YP_008376595.1|	-	2.8e-16	59.1	0.3	1e-07	31.6	0.1	2.7	2	0	0	2	2	2	2	ACT	domain
ACT	PF01842.25	gi|529077592|ref|YP_008376595.1|	-	4.6e-09	35.9	0.3	0.0017	18.1	0.1	3.0	2	0	0	2	2	2	2	ACT	domain
ACT_4	PF13291.6	gi|529077592|ref|YP_008376595.1|	-	0.002	18.6	0.2	0.2	12.3	0.1	2.6	2	0	0	2	2	2	1	ACT	domain
SBP_bac_5	PF00496.22	gi|529077593|ref|YP_008376596.1|	-	9.4e-47	159.8	0.1	2.7e-41	141.8	0.0	2.1	2	0	0	2	2	2	2	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
PAP2_3	PF14378.6	gi|529077594|ref|YP_008376597.1|	-	8.1e-18	64.8	15.6	8.1e-18	64.8	15.6	1.9	2	1	0	2	2	2	1	PAP2	superfamily
PAP2	PF01569.21	gi|529077594|ref|YP_008376597.1|	-	6.9e-11	42.1	3.4	6.9e-11	42.1	3.4	2.5	3	1	1	4	4	4	1	PAP2	superfamily
DUF4668	PF15701.5	gi|529077594|ref|YP_008376597.1|	-	0.049	13.5	1.9	2.7	7.8	0.2	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4668)
Radical_SAM	PF04055.21	gi|529077595|ref|YP_008376598.1|	-	3.3e-06	27.6	0.6	0.00013	22.4	0.1	2.3	1	1	1	2	2	2	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|529077595|ref|YP_008376598.1|	-	8.9e-05	22.6	0.0	0.00014	21.9	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|529077595|ref|YP_008376598.1|	-	0.034	14.4	0.0	0.076	13.3	0.0	1.6	1	0	0	1	1	1	0	4Fe-4S	single	cluster	domain
PASTA	PF03793.19	gi|529077595|ref|YP_008376598.1|	-	0.15	11.9	0.4	2	8.3	1.0	2.5	2	1	0	2	2	2	0	PASTA	domain
DUF1272	PF06906.11	gi|529077596|ref|YP_008376599.1|	-	0.00026	21.0	0.7	0.00029	20.9	0.7	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1272)
DZR	PF12773.7	gi|529077596|ref|YP_008376599.1|	-	0.0047	16.9	1.2	0.0057	16.7	1.2	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
IBR	PF01485.21	gi|529077596|ref|YP_008376599.1|	-	0.0058	16.8	0.9	0.0064	16.7	0.9	1.1	1	0	0	1	1	1	1	IBR	domain,	a	half	RING-finger	domain
zf-C2HC5	PF06221.13	gi|529077596|ref|YP_008376599.1|	-	0.0058	16.6	0.7	0.0063	16.5	0.7	1.1	1	0	0	1	1	1	1	Putative	zinc	finger	motif,	C2HC5-type
HypA	PF01155.19	gi|529077596|ref|YP_008376599.1|	-	0.012	15.7	1.0	0.012	15.6	1.0	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
OrfB_Zn_ribbon	PF07282.11	gi|529077596|ref|YP_008376599.1|	-	0.012	15.5	1.2	0.015	15.2	1.2	1.1	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Desulfoferrod_N	PF06397.12	gi|529077596|ref|YP_008376599.1|	-	0.032	13.8	0.7	0.032	13.8	0.7	1.8	1	1	1	2	2	2	0	Desulfoferrodoxin,	N-terminal	domain
zf-AN1	PF01428.16	gi|529077596|ref|YP_008376599.1|	-	0.049	13.8	1.8	0.73	10.0	1.8	2.0	1	1	1	2	2	2	0	AN1-like	Zinc	finger
Zn-ribbon_8	PF09723.10	gi|529077596|ref|YP_008376599.1|	-	0.11	12.7	3.8	0.49	10.6	3.8	1.9	1	1	0	1	1	1	0	Zinc	ribbon	domain
UPF0020	PF01170.18	gi|529077597|ref|YP_008376600.1|	-	3.8e-25	88.7	0.2	4e-24	85.4	0.2	2.1	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_25	PF13649.6	gi|529077597|ref|YP_008376600.1|	-	2.6e-11	44.1	0.2	5.8e-11	43.0	0.2	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|529077597|ref|YP_008376600.1|	-	1.5e-08	34.5	0.0	2.1e-08	34.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|529077597|ref|YP_008376600.1|	-	1.6e-08	35.1	0.1	3.7e-08	33.9	0.1	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|529077597|ref|YP_008376600.1|	-	2.2e-08	34.0	0.0	4e-08	33.1	0.0	1.4	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
MTS	PF05175.14	gi|529077597|ref|YP_008376600.1|	-	2.9e-05	23.7	0.0	4.8e-05	23.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
THUMP	PF02926.17	gi|529077597|ref|YP_008376600.1|	-	0.00019	21.6	0.0	0.0003	20.9	0.0	1.3	1	0	0	1	1	1	1	THUMP	domain
Methyltransf_23	PF13489.6	gi|529077597|ref|YP_008376600.1|	-	0.00032	20.6	0.0	0.00057	19.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|529077597|ref|YP_008376600.1|	-	0.0005	19.5	0.0	0.00078	18.8	0.0	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
N6_Mtase	PF02384.16	gi|529077597|ref|YP_008376600.1|	-	0.00071	18.9	0.0	0.0017	17.7	0.0	1.5	1	1	0	1	1	1	1	N-6	DNA	Methylase
Methyltransf_12	PF08242.12	gi|529077597|ref|YP_008376600.1|	-	0.0067	17.1	0.0	0.013	16.2	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
AviRa	PF11599.8	gi|529077597|ref|YP_008376600.1|	-	0.018	14.5	0.0	0.29	10.6	0.0	2.1	1	1	1	2	2	2	0	RRNA	methyltransferase	AviRa
PCMT	PF01135.19	gi|529077597|ref|YP_008376600.1|	-	0.089	12.5	0.0	0.14	11.9	0.0	1.3	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_15	PF09445.10	gi|529077597|ref|YP_008376600.1|	-	0.13	11.8	0.0	0.19	11.3	0.0	1.2	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
TBP	PF00352.21	gi|529077598|ref|YP_008376601.1|	-	1.9e-57	191.1	0.0	1.9e-27	95.0	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.8	gi|529077598|ref|YP_008376601.1|	-	0.00015	21.8	0.0	0.29	11.3	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
T4bSS_IcmS	PF12608.8	gi|529077598|ref|YP_008376601.1|	-	0.00032	20.9	0.0	0.086	13.2	0.0	2.2	2	0	0	2	2	2	2	Type	IVb	secretion,	IcmS,	effector-recruitment
PucR	PF07905.11	gi|529077598|ref|YP_008376601.1|	-	0.11	12.8	0.0	6.2	7.1	0.0	2.4	2	0	0	2	2	2	0	Purine	catabolism	regulatory	protein-like	family
Pyr_redox_2	PF07992.14	gi|529077600|ref|YP_008376603.1|	-	6.8e-34	117.4	8.1	8.1e-34	117.2	8.1	1.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|529077600|ref|YP_008376603.1|	-	2.2e-17	63.3	2.8	9.9e-13	48.0	0.2	2.4	1	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|529077600|ref|YP_008376603.1|	-	3.3e-07	29.4	1.8	5.4e-05	22.1	0.5	2.5	2	1	1	3	3	3	2	HI0933-like	protein
GIDA	PF01134.22	gi|529077600|ref|YP_008376603.1|	-	1.6e-06	27.4	8.4	0.0017	17.5	0.7	3.8	3	1	0	4	4	4	3	Glucose	inhibited	division	protein	A
DAO	PF01266.24	gi|529077600|ref|YP_008376603.1|	-	3e-06	27.1	9.3	0.0027	17.3	2.0	3.1	2	1	0	3	3	3	2	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.27	gi|529077600|ref|YP_008376603.1|	-	6.2e-06	26.7	3.7	0.00075	20.0	0.1	2.7	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|529077600|ref|YP_008376603.1|	-	3.6e-05	23.9	0.2	0.00017	21.8	0.1	2.2	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
NAD_binding_9	PF13454.6	gi|529077600|ref|YP_008376603.1|	-	6.3e-05	23.0	3.3	0.48	10.4	0.1	3.5	4	0	0	4	4	4	2	FAD-NAD(P)-binding
FAD_oxidored	PF12831.7	gi|529077600|ref|YP_008376603.1|	-	0.00016	21.1	3.0	0.00027	20.4	3.0	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|529077600|ref|YP_008376603.1|	-	0.00019	20.6	3.3	0.00026	20.2	1.7	2.0	1	1	1	2	2	2	1	FAD	binding	domain
K_oxygenase	PF13434.6	gi|529077600|ref|YP_008376603.1|	-	0.0017	17.6	0.1	0.23	10.5	0.0	2.1	2	0	0	2	2	2	1	L-lysine	6-monooxygenase	(NADPH-requiring)
Thi4	PF01946.17	gi|529077600|ref|YP_008376603.1|	-	0.0019	17.5	0.7	0.0049	16.1	0.3	1.9	2	0	0	2	2	2	1	Thi4	family
NAD_binding_7	PF13241.6	gi|529077600|ref|YP_008376603.1|	-	0.0023	18.3	0.3	0.028	14.9	0.0	2.2	2	0	0	2	2	2	1	Putative	NAD(P)-binding
FAD_binding_3	PF01494.19	gi|529077600|ref|YP_008376603.1|	-	0.0093	15.2	0.2	0.036	13.3	0.3	1.8	2	0	0	2	2	2	1	FAD	binding	domain
Lycopene_cycl	PF05834.12	gi|529077600|ref|YP_008376603.1|	-	0.011	14.8	0.3	0.052	12.6	0.2	1.9	2	0	0	2	2	2	0	Lycopene	cyclase	protein
AlaDh_PNT_C	PF01262.21	gi|529077600|ref|YP_008376603.1|	-	0.035	13.4	0.6	0.035	13.4	0.6	1.6	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Trp_halogenase	PF04820.14	gi|529077600|ref|YP_008376603.1|	-	0.19	10.5	0.1	0.47	9.2	0.1	1.7	1	0	0	1	1	1	0	Tryptophan	halogenase
PadR	PF03551.14	gi|529077602|ref|YP_008376605.1|	-	2e-05	24.5	0.0	3.6e-05	23.7	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
FUR	PF01475.19	gi|529077602|ref|YP_008376605.1|	-	4.6e-05	23.6	0.0	8.7e-05	22.7	0.0	1.5	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
DUF2513	PF10711.9	gi|529077602|ref|YP_008376605.1|	-	0.00014	22.1	0.0	0.00025	21.3	0.0	1.5	1	1	0	1	1	1	1	Hypothetical	protein	(DUF2513)
MarR_2	PF12802.7	gi|529077602|ref|YP_008376605.1|	-	0.00031	20.5	0.0	0.00064	19.6	0.0	1.5	1	1	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|529077602|ref|YP_008376605.1|	-	0.0013	18.7	0.0	0.0024	17.9	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|529077602|ref|YP_008376605.1|	-	0.0056	16.2	0.2	0.051	13.1	0.0	2.5	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|529077602|ref|YP_008376605.1|	-	0.0064	16.4	0.0	0.016	15.1	0.0	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|529077602|ref|YP_008376605.1|	-	0.016	15.2	0.0	0.03	14.3	0.0	1.6	1	1	0	1	1	1	0	HTH	domain
MarR	PF01047.22	gi|529077602|ref|YP_008376605.1|	-	0.025	14.5	0.0	0.068	13.1	0.0	1.7	1	1	0	1	1	1	0	MarR	family
HTH_27	PF13463.6	gi|529077602|ref|YP_008376605.1|	-	0.038	14.5	0.0	0.07	13.6	0.0	1.6	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
RuBisCO_small	PF00101.20	gi|529077602|ref|YP_008376605.1|	-	0.055	13.5	0.0	0.093	12.7	0.0	1.6	1	1	0	1	1	1	0	Ribulose	bisphosphate	carboxylase,	small	chain
Replic_Relax	PF13814.6	gi|529077602|ref|YP_008376605.1|	-	0.069	13.2	0.0	0.089	12.8	0.0	1.2	1	0	0	1	1	1	0	Replication-relaxation
HxlR	PF01638.17	gi|529077602|ref|YP_008376605.1|	-	0.13	12.1	0.0	0.33	10.8	0.0	1.7	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_34	PF13601.6	gi|529077602|ref|YP_008376605.1|	-	0.13	12.5	0.0	0.2	11.9	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|529077602|ref|YP_008376605.1|	-	0.15	11.9	0.0	0.27	11.1	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Mnd1	PF03962.15	gi|529077602|ref|YP_008376605.1|	-	0.18	12.1	0.1	0.3	11.4	0.1	1.4	1	0	0	1	1	1	0	Mnd1	HTH	domain
AstE_AspA	PF04952.14	gi|529077603|ref|YP_008376606.1|	-	8.5e-59	199.0	0.0	9.7e-59	198.8	0.0	1.0	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
PQQ_2	PF13360.6	gi|529077604|ref|YP_008376607.1|	-	6.4e-18	65.2	0.1	5.5e-11	42.5	0.0	3.7	2	1	1	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.6	gi|529077604|ref|YP_008376607.1|	-	3.6e-09	36.8	13.9	0.059	13.9	0.1	7.1	7	0	0	7	7	7	3	PQQ-like	domain
PQQ	PF01011.21	gi|529077604|ref|YP_008376607.1|	-	2.1e-05	24.2	0.0	3.5	7.7	0.0	5.6	6	0	0	6	6	6	2	PQQ	enzyme	repeat
ABM	PF03992.16	gi|529077605|ref|YP_008376608.1|	-	1.5e-14	53.8	0.3	2e-14	53.4	0.3	1.2	1	0	0	1	1	1	1	Antibiotic	biosynthesis	monooxygenase
Multi_ubiq	PF14452.6	gi|529077605|ref|YP_008376608.1|	-	0.1	12.9	0.1	0.16	12.3	0.1	1.4	1	0	0	1	1	1	0	Multiubiquitin
PALP	PF00291.25	gi|529077606|ref|YP_008376609.1|	-	8.3e-64	215.8	4.1	9.5e-64	215.6	4.1	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
SRP54	PF00448.22	gi|529077607|ref|YP_008376610.1|	-	2.1e-62	210.2	0.1	3.2e-62	209.7	0.1	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP_SPB	PF02978.19	gi|529077607|ref|YP_008376610.1|	-	2.8e-28	98.4	5.3	2.8e-28	98.4	5.3	3.2	4	0	0	4	4	3	1	Signal	peptide	binding	domain
SRP54_N	PF02881.19	gi|529077607|ref|YP_008376610.1|	-	1.1e-17	64.0	0.9	2.4e-17	62.9	0.1	2.1	2	0	0	2	2	1	1	SRP54-type	protein,	helical	bundle	domain
CbiA	PF01656.23	gi|529077607|ref|YP_008376610.1|	-	0.00025	21.1	0.0	0.00067	19.7	0.0	1.9	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
cobW	PF02492.19	gi|529077607|ref|YP_008376610.1|	-	0.0026	17.4	0.5	0.038	13.6	0.5	2.3	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
Zeta_toxin	PF06414.12	gi|529077607|ref|YP_008376610.1|	-	0.0033	16.7	0.0	0.01	15.1	0.0	1.8	2	0	0	2	2	2	1	Zeta	toxin
SMC_N	PF02463.19	gi|529077607|ref|YP_008376610.1|	-	0.01	15.3	0.0	0.017	14.6	0.0	1.3	1	0	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
ArsA_ATPase	PF02374.15	gi|529077607|ref|YP_008376610.1|	-	0.011	14.9	7.2	0.05	12.8	0.0	3.3	2	1	1	3	3	3	0	Anion-transporting	ATPase
AAA_17	PF13207.6	gi|529077607|ref|YP_008376610.1|	-	0.031	14.7	3.0	0.57	10.6	0.9	3.4	2	1	0	2	2	2	0	AAA	domain
AAA_18	PF13238.6	gi|529077607|ref|YP_008376610.1|	-	0.043	14.4	0.0	0.2	12.2	0.0	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|529077607|ref|YP_008376610.1|	-	0.047	13.8	0.0	0.12	12.5	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
APS_kinase	PF01583.20	gi|529077607|ref|YP_008376610.1|	-	0.052	13.4	0.0	0.1	12.5	0.0	1.5	1	0	0	1	1	1	0	Adenylylsulphate	kinase
AAA_24	PF13479.6	gi|529077607|ref|YP_008376610.1|	-	0.055	13.2	0.0	0.11	12.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
KTI12	PF08433.10	gi|529077607|ref|YP_008376610.1|	-	0.089	12.2	0.0	0.18	11.2	0.0	1.5	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA_22	PF13401.6	gi|529077607|ref|YP_008376610.1|	-	0.092	13.0	0.0	0.37	11.1	0.0	2.1	2	0	0	2	2	1	0	AAA	domain
MobB	PF03205.14	gi|529077607|ref|YP_008376610.1|	-	0.12	12.3	0.0	0.27	11.2	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NACHT	PF05729.12	gi|529077607|ref|YP_008376610.1|	-	0.39	10.6	1.6	0.82	9.6	0.2	2.2	2	0	0	2	2	2	0	NACHT	domain
AAA_28	PF13521.6	gi|529077607|ref|YP_008376610.1|	-	1.3	9.3	4.6	28	4.9	2.5	3.2	1	1	1	2	2	2	0	AAA	domain
ABC_membrane	PF00664.23	gi|529077608|ref|YP_008376611.1|	-	1.6e-44	152.6	2.0	2.1e-44	152.3	2.0	1.1	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
ABC_tran	PF00005.27	gi|529077608|ref|YP_008376611.1|	-	1.1e-36	126.3	0.0	2.2e-36	125.4	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
AAA_22	PF13401.6	gi|529077608|ref|YP_008376611.1|	-	9.6e-05	22.7	0.1	0.00049	20.4	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|529077608|ref|YP_008376611.1|	-	0.00025	20.4	0.0	0.00049	19.4	0.0	1.5	1	0	0	1	1	1	1	Zeta	toxin
SMC_N	PF02463.19	gi|529077608|ref|YP_008376611.1|	-	0.00026	20.5	0.6	0.015	14.7	0.1	2.1	1	1	1	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|529077608|ref|YP_008376611.1|	-	0.0014	19.1	0.1	0.0031	17.9	0.1	1.6	1	0	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|529077608|ref|YP_008376611.1|	-	0.0019	18.1	0.0	0.0038	17.1	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_24	PF13479.6	gi|529077608|ref|YP_008376611.1|	-	0.002	17.9	0.1	0.0058	16.4	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_21	PF13304.6	gi|529077608|ref|YP_008376611.1|	-	0.0026	17.6	0.0	0.029	14.2	0.0	2.0	1	1	1	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_33	PF13671.6	gi|529077608|ref|YP_008376611.1|	-	0.0049	17.0	0.0	0.012	15.8	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|529077608|ref|YP_008376611.1|	-	0.0066	16.2	0.0	0.021	14.6	0.0	1.8	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|529077608|ref|YP_008376611.1|	-	0.0074	16.0	0.5	0.019	14.7	0.5	1.7	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|529077608|ref|YP_008376611.1|	-	0.012	16.1	0.1	0.1	13.0	0.1	2.3	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.6	gi|529077608|ref|YP_008376611.1|	-	0.014	15.9	0.0	0.042	14.4	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
DUF87	PF01935.17	gi|529077608|ref|YP_008376611.1|	-	0.038	14.1	0.1	0.11	12.6	0.0	1.8	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
Guanylate_kin	PF00625.21	gi|529077608|ref|YP_008376611.1|	-	0.04	13.6	0.1	0.13	12.0	0.1	1.8	1	1	0	1	1	1	0	Guanylate	kinase
AAA_7	PF12775.7	gi|529077608|ref|YP_008376611.1|	-	0.043	13.3	0.0	0.092	12.3	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
TsaE	PF02367.17	gi|529077608|ref|YP_008376611.1|	-	0.059	13.4	0.0	0.12	12.4	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_5	PF07728.14	gi|529077608|ref|YP_008376611.1|	-	0.069	13.1	0.1	0.58	10.1	0.0	2.3	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
MMR_HSR1	PF01926.23	gi|529077608|ref|YP_008376611.1|	-	0.087	12.9	0.0	0.23	11.5	0.0	1.7	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_23	PF13476.6	gi|529077608|ref|YP_008376611.1|	-	0.096	13.2	0.0	0.21	12.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DUF3080	PF11279.8	gi|529077608|ref|YP_008376611.1|	-	0.19	10.9	0.0	0.29	10.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3080)
PDT	PF00800.18	gi|529077610|ref|YP_008376613.1|	-	1.7e-46	158.3	0.4	2.1e-46	158.1	0.4	1.1	1	0	0	1	1	1	1	Prephenate	dehydratase
ACT	PF01842.25	gi|529077610|ref|YP_008376613.1|	-	2.4e-06	27.2	0.0	7.6e-06	25.6	0.0	1.9	1	0	0	1	1	1	1	ACT	domain
DBD_HTH	PF18430.1	gi|529077610|ref|YP_008376613.1|	-	0.071	12.9	0.5	4.4	7.1	0.0	3.4	3	0	0	3	3	3	0	Putative	DNA-binding	domain
Pkinase	PF00069.25	gi|529077611|ref|YP_008376614.1|	-	4.3e-06	26.3	0.0	6.2e-06	25.8	0.0	1.2	1	0	0	1	1	1	1	Protein	kinase	domain
Pkinase_Tyr	PF07714.17	gi|529077611|ref|YP_008376614.1|	-	3.9e-05	23.1	0.0	5.5e-05	22.6	0.0	1.2	1	0	0	1	1	1	1	Protein	tyrosine	kinase
Kinase-like	PF14531.6	gi|529077611|ref|YP_008376614.1|	-	0.0057	16.0	0.0	0.0079	15.5	0.0	1.2	1	0	0	1	1	1	1	Kinase-like
Cpn60_TCP1	PF00118.24	gi|529077612|ref|YP_008376615.1|	-	3.6e-176	586.6	17.3	4.1e-176	586.4	17.3	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Peptidase_S66	PF02016.15	gi|529077612|ref|YP_008376615.1|	-	0.085	13.0	0.4	0.45	10.6	0.1	2.2	2	1	0	2	2	2	0	LD-carboxypeptidase	N-terminal	domain
CoA_binding_2	PF13380.6	gi|529077612|ref|YP_008376615.1|	-	0.31	11.5	1.7	1.4	9.4	0.1	2.6	2	0	0	2	2	2	0	CoA	binding	domain
Ala_racemase_N	PF01168.20	gi|529077612|ref|YP_008376615.1|	-	8.3	6.0	7.8	7	6.2	0.6	2.7	2	1	1	3	3	3	0	Alanine	racemase,	N-terminal	domain
KH_1	PF00013.29	gi|529077613|ref|YP_008376616.1|	-	1.2e-13	50.7	0.3	1.5e-07	31.1	0.1	2.3	2	0	0	2	2	2	2	KH	domain
KH_2	PF07650.17	gi|529077613|ref|YP_008376616.1|	-	8.5e-05	22.3	1.3	0.00082	19.1	0.1	2.4	2	1	0	2	2	2	1	KH	domain
KH_8	PF17903.1	gi|529077613|ref|YP_008376616.1|	-	0.0013	18.8	0.0	0.0021	18.1	0.0	1.3	1	0	0	1	1	1	1	Krr1	KH1	domain
KH_4	PF13083.6	gi|529077613|ref|YP_008376616.1|	-	0.022	14.6	4.0	1.2	9.1	0.5	3.3	2	1	1	3	3	3	0	KH	domain
Rad51	PF08423.11	gi|529077614|ref|YP_008376617.1|	-	1.9e-76	256.7	0.1	6.1e-43	146.9	0.0	2.0	2	0	0	2	2	2	2	Rad51
HHH_5	PF14520.6	gi|529077614|ref|YP_008376617.1|	-	1.5e-11	44.7	0.0	6.6e-11	42.7	0.0	2.1	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
RecA	PF00154.21	gi|529077614|ref|YP_008376617.1|	-	2.1e-08	34.0	0.1	0.0017	17.9	0.1	2.1	1	1	1	2	2	2	2	recA	bacterial	DNA	recombination	protein
HHH	PF00633.23	gi|529077614|ref|YP_008376617.1|	-	1.8e-06	27.5	0.9	0.00048	19.9	0.1	2.6	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_2	PF12826.7	gi|529077614|ref|YP_008376617.1|	-	7e-05	22.9	0.0	0.00018	21.5	0.0	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
Cdd1	PF11731.8	gi|529077614|ref|YP_008376617.1|	-	0.00024	21.2	0.0	0.00048	20.3	0.0	1.5	1	0	0	1	1	1	1	Pathogenicity	locus
ATPase	PF06745.13	gi|529077614|ref|YP_008376617.1|	-	0.00031	20.1	0.0	0.00055	19.4	0.0	1.5	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|529077614|ref|YP_008376617.1|	-	0.001	18.7	0.1	0.0017	18.0	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
HHH_3	PF12836.7	gi|529077614|ref|YP_008376617.1|	-	0.014	15.6	0.0	1.7	8.9	0.0	2.5	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
DNA_pol_lambd_f	PF10391.9	gi|529077614|ref|YP_008376617.1|	-	0.018	14.9	0.0	0.064	13.1	0.0	2.0	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
IMS_HHH	PF11798.8	gi|529077614|ref|YP_008376617.1|	-	0.026	14.8	0.0	0.094	13.1	0.0	1.9	2	0	0	2	2	2	0	IMS	family	HHH	motif
HHH_8	PF14716.6	gi|529077614|ref|YP_008376617.1|	-	0.042	14.2	0.0	0.22	11.9	0.0	2.2	2	0	0	2	2	2	0	Helix-hairpin-helix	domain
AAA_22	PF13401.6	gi|529077614|ref|YP_008376617.1|	-	0.045	14.0	0.2	0.16	12.2	0.2	1.9	1	1	0	1	1	1	0	AAA	domain
LrgB	PF04172.16	gi|529077615|ref|YP_008376618.1|	-	0.0025	17.3	2.3	0.0031	17.1	2.3	1.1	1	0	0	1	1	1	1	LrgB-like	family
DUF3290	PF11694.8	gi|529077615|ref|YP_008376618.1|	-	0.18	11.7	1.4	0.24	11.3	1.4	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3290)
AsnC_trans_reg	PF01037.21	gi|529077616|ref|YP_008376619.1|	-	4.9e-08	32.8	0.2	5.3e-08	32.7	0.2	1.1	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
NapD	PF03927.13	gi|529077616|ref|YP_008376619.1|	-	0.014	15.4	0.7	0.019	15.0	0.7	1.1	1	0	0	1	1	1	0	NapD	protein
TrkA_N	PF02254.18	gi|529077617|ref|YP_008376620.1|	-	2.6e-25	88.9	0.2	4.1e-25	88.3	0.2	1.3	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|529077617|ref|YP_008376620.1|	-	8e-10	38.4	0.6	2e-09	37.2	0.2	1.9	2	0	0	2	2	2	1	TrkA-C	domain
NAD_binding_7	PF13241.6	gi|529077617|ref|YP_008376620.1|	-	4.4e-05	23.9	0.1	0.0001	22.7	0.1	1.7	1	0	0	1	1	1	1	Putative	NAD(P)-binding
FAD_binding_3	PF01494.19	gi|529077617|ref|YP_008376620.1|	-	8e-05	22.0	0.1	8.8e-05	21.9	0.1	1.2	1	0	0	1	1	1	1	FAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|529077617|ref|YP_008376620.1|	-	0.00014	21.5	0.0	0.00024	20.7	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Pyr_redox_2	PF07992.14	gi|529077617|ref|YP_008376620.1|	-	0.00022	20.5	0.2	0.00028	20.2	0.2	1.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|529077617|ref|YP_008376620.1|	-	0.00036	20.2	0.2	0.00039	20.1	0.2	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
ApbA	PF02558.16	gi|529077617|ref|YP_008376620.1|	-	0.002	17.8	0.1	0.003	17.2	0.1	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
3HCDH_N	PF02737.18	gi|529077617|ref|YP_008376620.1|	-	0.0022	17.9	0.3	0.0038	17.1	0.3	1.7	1	1	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_8	PF13450.6	gi|529077617|ref|YP_008376620.1|	-	0.0025	18.0	0.4	0.0054	16.9	0.4	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.24	gi|529077617|ref|YP_008376620.1|	-	0.0059	15.7	0.4	0.0061	15.7	0.4	1.2	1	0	0	1	1	1	1	FAD	binding	domain
AdoHcyase_NAD	PF00670.21	gi|529077617|ref|YP_008376620.1|	-	0.0076	16.3	0.2	0.015	15.4	0.2	1.5	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
Pyr_redox	PF00070.27	gi|529077617|ref|YP_008376620.1|	-	0.0085	16.6	0.4	0.019	15.5	0.4	1.7	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
2-Hacid_dh_C	PF02826.19	gi|529077617|ref|YP_008376620.1|	-	0.024	14.0	0.1	0.039	13.3	0.1	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|529077617|ref|YP_008376620.1|	-	0.03	13.9	0.1	0.049	13.2	0.1	1.4	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
XdhC_C	PF13478.6	gi|529077617|ref|YP_008376620.1|	-	0.049	14.1	0.1	0.15	12.6	0.0	1.9	2	0	0	2	2	2	0	XdhC	Rossmann	domain
Glyco_transf_4	PF13439.6	gi|529077617|ref|YP_008376620.1|	-	0.056	13.4	0.7	0.27	11.2	0.1	2.3	2	1	1	3	3	3	0	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|529077617|ref|YP_008376620.1|	-	0.21	12.0	2.0	0.46	10.9	0.7	2.1	2	1	0	2	2	2	0	Glycosyl	transferase	4-like	domain
AsnC_trans_reg	PF01037.21	gi|529077618|ref|YP_008376621.1|	-	4e-13	49.1	0.1	4.5e-13	49.0	0.1	1.0	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
TadZ_N	PF16968.5	gi|529077618|ref|YP_008376621.1|	-	0.02	14.6	0.0	0.022	14.5	0.0	1.1	1	0	0	1	1	1	0	Pilus	assembly	protein	TadZ	N-terminal
Spore_YhcN_YlaJ	PF09580.10	gi|529077618|ref|YP_008376621.1|	-	0.11	12.6	0.9	0.24	11.5	0.6	1.6	1	1	1	2	2	2	0	Sporulation	lipoprotein	YhcN/YlaJ	(Spore_YhcN_YlaJ)
DUF4184	PF13803.6	gi|529077620|ref|YP_008376623.1|	-	0.0073	16.1	1.0	0.015	15.1	1.0	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4184)
YdjM	PF04307.14	gi|529077620|ref|YP_008376623.1|	-	0.028	13.7	1.7	0.039	13.3	1.7	1.5	1	1	0	1	1	1	0	LexA-binding,	inner	membrane-associated	putative	hydrolase
Glycos_transf_3	PF00591.21	gi|529077621|ref|YP_008376624.1|	-	2.1e-99	332.2	1.9	2.9e-99	331.8	1.9	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.17	gi|529077621|ref|YP_008376624.1|	-	5.5e-17	61.4	4.3	1.8e-16	59.7	2.6	2.3	2	0	0	2	2	2	1	Glycosyl	transferase	family,	helical	bundle	domain
DUF2717	PF10911.8	gi|529077621|ref|YP_008376624.1|	-	0.0052	16.5	0.0	0.014	15.1	0.0	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2717)
PRAI	PF00697.22	gi|529077622|ref|YP_008376625.1|	-	7.4e-38	130.3	0.1	8.4e-38	130.1	0.1	1.0	1	0	0	1	1	1	1	N-(5'phosphoribosyl)anthranilate	(PRA)	isomerase
FMN_dh	PF01070.18	gi|529077622|ref|YP_008376625.1|	-	0.00094	18.3	0.3	0.025	13.6	0.3	2.1	1	1	0	1	1	1	1	FMN-dependent	dehydrogenase
DUF2188	PF09954.9	gi|529077622|ref|YP_008376625.1|	-	0.0031	17.6	0.0	0.0076	16.4	0.0	1.7	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2188)
BtpA	PF03437.15	gi|529077622|ref|YP_008376625.1|	-	0.011	15.1	0.8	0.072	12.5	0.1	2.3	1	1	2	3	3	3	0	BtpA	family
TMP-TENI	PF02581.17	gi|529077622|ref|YP_008376625.1|	-	0.018	14.4	2.0	0.038	13.3	0.3	2.3	1	1	0	2	2	2	0	Thiamine	monophosphate	synthase
AAA_26	PF13500.6	gi|529077622|ref|YP_008376625.1|	-	0.057	13.2	0.1	0.11	12.3	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
Chorismate_bind	PF00425.18	gi|529077623|ref|YP_008376626.1|	-	3.6e-89	298.7	0.0	5.3e-89	298.2	0.0	1.3	1	0	0	1	1	1	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.13	gi|529077623|ref|YP_008376626.1|	-	6.2e-17	62.1	0.0	2e-14	54.0	0.0	3.3	2	1	0	2	2	2	2	Anthranilate	synthase	component	I,	N	terminal	region
GATase	PF00117.28	gi|529077624|ref|YP_008376627.1|	-	4.3e-43	147.3	0.0	4.9e-43	147.1	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|529077624|ref|YP_008376627.1|	-	1.4e-07	31.5	0.0	7.1e-07	29.2	0.0	1.9	1	1	0	1	1	1	1	Peptidase	C26
Ribonuc_red_lgC	PF02867.15	gi|529077625|ref|YP_008376628.1|	-	2.7e-133	445.3	0.1	4.9e-125	418.0	0.0	3.2	3	0	0	3	3	3	3	Ribonucleotide	reductase,	barrel	domain
LAGLIDADG_3	PF14528.6	gi|529077625|ref|YP_008376628.1|	-	1e-65	218.0	0.3	3.3e-21	75.4	0.0	8.0	8	0	0	8	8	8	6	LAGLIDADG-like	domain
Intein_splicing	PF14890.6	gi|529077625|ref|YP_008376628.1|	-	4.1e-55	185.4	0.0	1.9e-17	63.5	0.0	4.5	4	0	0	4	4	4	4	Intein	splicing	domain
Ribonuc_red_lgN	PF00317.21	gi|529077625|ref|YP_008376628.1|	-	1.1e-20	73.4	1.4	5.8e-16	58.3	0.0	3.7	3	1	0	3	3	3	2	Ribonucleotide	reductase,	all-alpha	domain
LAGLIDADG_WhiA	PF14527.6	gi|529077625|ref|YP_008376628.1|	-	1.1e-09	38.2	0.0	0.0015	18.6	0.0	3.5	3	0	0	3	3	3	2	WhiA	LAGLIDADG-like	domain
HTH_23	PF13384.6	gi|529077625|ref|YP_008376628.1|	-	1.6e-08	34.1	0.0	0.0057	16.4	0.0	2.6	2	0	0	2	2	2	2	Homeodomain-like	domain
Hint	PF01079.20	gi|529077625|ref|YP_008376628.1|	-	9.1e-07	28.6	0.0	0.13	11.8	0.0	3.6	3	0	0	3	3	3	2	Hint	module
Hint_2	PF13403.6	gi|529077625|ref|YP_008376628.1|	-	4.8e-06	26.9	3.2	5.3	7.3	0.1	6.1	6	0	0	6	6	6	1	Hint	domain
HTH_38	PF13936.6	gi|529077625|ref|YP_008376628.1|	-	6.2e-06	25.9	0.0	0.011	15.5	0.0	2.7	2	0	0	2	2	2	2	Helix-turn-helix	domain
GerE	PF00196.19	gi|529077625|ref|YP_008376628.1|	-	0.00015	21.3	0.0	0.31	10.6	0.0	2.6	2	0	0	2	2	2	2	Bacterial	regulatory	proteins,	luxR	family
Hom_end	PF05204.14	gi|529077625|ref|YP_008376628.1|	-	0.0014	18.8	1.3	0.055	13.6	0.0	4.1	5	0	0	5	5	5	1	Homing	endonuclease
Sigma70_r4_2	PF08281.12	gi|529077625|ref|YP_008376628.1|	-	0.0018	17.9	0.1	2.2	8.0	0.0	2.8	2	0	0	2	2	2	2	Sigma-70,	region	4
HTH_7	PF02796.15	gi|529077625|ref|YP_008376628.1|	-	0.0053	16.8	0.0	1.8	8.7	0.0	2.7	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	resolvase
HTH_28	PF13518.6	gi|529077625|ref|YP_008376628.1|	-	0.04	14.0	0.0	2.7	8.2	0.0	3.2	3	0	0	3	3	2	0	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|529077625|ref|YP_008376628.1|	-	0.04	13.9	0.0	1.1	9.3	0.0	2.5	2	0	0	2	2	2	0	Winged	helix-turn	helix
DUF433	PF04255.14	gi|529077625|ref|YP_008376628.1|	-	0.05	13.5	0.0	0.59	10.0	0.0	2.8	3	0	0	3	3	2	0	Protein	of	unknown	function	(DUF433)
HTH_AsnC-type	PF13404.6	gi|529077625|ref|YP_008376628.1|	-	0.073	12.9	0.1	7.6	6.5	0.1	2.7	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|529077625|ref|YP_008376628.1|	-	0.073	13.0	0.0	4.1	7.4	0.0	3.0	2	0	0	2	2	2	0	HTH	domain
DUF3563	PF12086.8	gi|529077625|ref|YP_008376628.1|	-	0.16	11.7	0.5	0.5	10.1	0.5	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3563)
TackOD1	PF18551.1	gi|529077625|ref|YP_008376628.1|	-	9.1	5.9	6.7	1.3	8.7	2.2	1.8	2	0	0	2	2	2	0	Thaumarchaeal	output	domain	1
Auto_anti-p27	PF06677.12	gi|529077626|ref|YP_008376629.1|	-	0.0019	18.3	3.0	0.0026	17.9	3.0	1.2	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-Mss51	PF13824.6	gi|529077626|ref|YP_008376629.1|	-	0.93	9.6	7.6	18	5.5	7.7	2.0	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
SNARE_assoc	PF09335.11	gi|529077627|ref|YP_008376630.1|	-	5.1e-16	59.3	5.0	5.1e-16	59.3	5.0	2.1	3	0	0	3	3	3	1	SNARE	associated	Golgi	protein
Kinocilin	PF15033.6	gi|529077627|ref|YP_008376630.1|	-	1.5	8.5	6.8	0.1	12.3	0.9	2.0	2	0	0	2	2	2	0	Kinocilin	protein
TSC22	PF01166.18	gi|529077629|ref|YP_008376632.1|	-	0.013	15.8	0.5	0.029	14.7	0.5	1.5	1	0	0	1	1	1	0	TSC-22/dip/bun	family
DUF5089	PF17002.5	gi|529077629|ref|YP_008376632.1|	-	0.018	14.9	1.9	0.035	14.0	1.9	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5089)
ZapB	PF06005.12	gi|529077629|ref|YP_008376632.1|	-	0.13	12.8	3.5	0.26	11.7	3.5	1.5	1	0	0	1	1	1	0	Cell	division	protein	ZapB
FAM76	PF16046.5	gi|529077629|ref|YP_008376632.1|	-	0.43	9.9	2.6	0.53	9.6	2.6	1.1	1	0	0	1	1	1	0	FAM76	protein
SKA1	PF07160.12	gi|529077629|ref|YP_008376632.1|	-	0.44	10.4	3.2	0.24	11.2	1.1	1.5	1	1	1	2	2	2	0	Spindle	and	kinetochore-associated	protein	1
Pneumo_att_G	PF05539.11	gi|529077629|ref|YP_008376632.1|	-	5.3	6.5	8.7	7.2	6.1	8.7	1.1	1	0	0	1	1	1	0	Pneumovirinae	attachment	membrane	glycoprotein	G
Mac	PF12464.8	gi|529077630|ref|YP_008376633.1|	-	3.4e-20	72.0	0.4	5.5e-20	71.3	0.4	1.3	1	0	0	1	1	1	1	Maltose	acetyltransferase
Hexapep	PF00132.24	gi|529077630|ref|YP_008376633.1|	-	2.5e-14	52.3	11.3	9.1e-11	41.0	2.7	3.5	3	1	0	3	3	3	2	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|529077630|ref|YP_008376633.1|	-	1.1e-13	50.7	10.9	2.2e-10	40.1	2.1	3.6	4	0	0	4	4	4	2	Hexapeptide	repeat	of	succinyl-transferase
DUF3601	PF12208.8	gi|529077630|ref|YP_008376633.1|	-	0.18	11.9	0.0	0.34	11.0	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3601)
AsnC_trans_reg	PF01037.21	gi|529077631|ref|YP_008376634.1|	-	2.4e-11	43.4	0.9	3.9e-11	42.8	0.9	1.3	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|529077631|ref|YP_008376634.1|	-	2.1e-06	27.2	0.2	8.9e-06	25.2	0.2	2.2	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|529077631|ref|YP_008376634.1|	-	0.00013	21.7	0.0	0.00029	20.5	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|529077631|ref|YP_008376634.1|	-	0.00045	20.2	0.0	0.0015	18.6	0.0	1.9	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|529077631|ref|YP_008376634.1|	-	0.00069	19.5	0.0	0.0034	17.2	0.0	2.1	3	0	0	3	3	3	1	Sugar-specific	transcriptional	regulator	TrmB
DUF2250	PF10007.9	gi|529077631|ref|YP_008376634.1|	-	0.007	16.4	0.0	0.017	15.2	0.0	1.6	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
GYD	PF08734.11	gi|529077631|ref|YP_008376634.1|	-	0.012	15.6	0.1	0.018	15.0	0.1	1.5	1	0	0	1	1	1	0	GYD	domain
HTH_5	PF01022.20	gi|529077631|ref|YP_008376634.1|	-	0.015	15.1	0.0	0.027	14.3	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|529077631|ref|YP_008376634.1|	-	0.021	14.7	0.0	0.14	12.1	0.0	2.2	2	0	0	2	2	2	0	MarR	family
HTH_27	PF13463.6	gi|529077631|ref|YP_008376634.1|	-	0.03	14.8	0.0	0.064	13.8	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
EamA	PF00892.20	gi|529077632|ref|YP_008376635.1|	-	2.8e-35	121.5	37.2	5.6e-18	65.4	12.9	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
Tnp_DNA_bind	PF14706.6	gi|529077634|ref|YP_008376637.1|	-	1.7e-25	88.6	0.0	3.2e-25	87.7	0.0	1.5	1	0	0	1	1	1	1	Transposase	DNA-binding
Dimer_Tnp_Tn5	PF02281.16	gi|529077634|ref|YP_008376637.1|	-	1.1e-07	31.5	0.1	2.7e-07	30.2	0.1	1.8	1	1	0	1	1	1	1	Transposase	Tn5	dimerisation	domain
DDE_Tnp_1	PF01609.21	gi|529077634|ref|YP_008376637.1|	-	1.2e-07	31.6	0.1	2.3e-07	30.7	0.1	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
Thymidylate_kin	PF02223.17	gi|529077635|ref|YP_008376638.1|	-	3.4e-38	131.2	0.0	3.9e-38	131.0	0.0	1.0	1	0	0	1	1	1	1	Thymidylate	kinase
dNK	PF01712.19	gi|529077635|ref|YP_008376638.1|	-	0.0066	16.3	0.0	0.022	14.6	0.0	1.8	1	1	0	1	1	1	1	Deoxynucleoside	kinase
AAA_33	PF13671.6	gi|529077635|ref|YP_008376638.1|	-	0.0084	16.3	0.0	0.02	15.1	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|529077635|ref|YP_008376638.1|	-	0.059	13.9	0.0	0.22	12.1	0.0	2.1	1	1	0	1	1	1	0	AAA	domain
TetR_C_36	PF18598.1	gi|529077635|ref|YP_008376638.1|	-	0.061	13.3	0.4	0.12	12.3	0.1	1.6	2	0	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
PepSY	PF03413.19	gi|529077635|ref|YP_008376638.1|	-	0.12	12.9	1.1	2.5	8.7	0.3	2.9	2	1	0	2	2	2	0	Peptidase	propeptide	and	YPEB	domain
NAD_binding_10	PF13460.6	gi|529077636|ref|YP_008376639.1|	-	1.6e-30	106.3	0.0	2.2e-30	105.9	0.0	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
Epimerase	PF01370.21	gi|529077636|ref|YP_008376639.1|	-	3.1e-20	72.7	0.0	2.1e-19	70.0	0.0	2.1	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NmrA	PF05368.13	gi|529077636|ref|YP_008376639.1|	-	4.6e-16	59.1	0.0	6.4e-16	58.6	0.0	1.1	1	0	0	1	1	1	1	NmrA-like	family
3Beta_HSD	PF01073.19	gi|529077636|ref|YP_008376639.1|	-	5.5e-15	55.1	0.0	1.1e-13	50.9	0.0	2.0	1	1	1	2	2	2	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|529077636|ref|YP_008376639.1|	-	2e-14	53.4	0.0	3.8e-07	29.5	0.0	2.2	2	1	0	2	2	2	2	RmlD	substrate	binding	domain
GDP_Man_Dehyd	PF16363.5	gi|529077636|ref|YP_008376639.1|	-	1.7e-07	30.9	0.0	3.2e-07	30.0	0.0	1.4	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
NAD_binding_4	PF07993.12	gi|529077636|ref|YP_008376639.1|	-	2e-05	23.9	0.0	0.021	14.0	0.0	2.3	2	0	0	2	2	2	2	Male	sterility	protein
Polysacc_synt_2	PF02719.15	gi|529077636|ref|YP_008376639.1|	-	2.8e-05	23.4	0.0	0.001	18.3	0.0	2.1	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
adh_short	PF00106.25	gi|529077636|ref|YP_008376639.1|	-	8.7e-05	22.1	0.0	0.00012	21.6	0.0	1.3	1	0	0	1	1	1	1	short	chain	dehydrogenase
TrkA_N	PF02254.18	gi|529077636|ref|YP_008376639.1|	-	0.0043	17.3	0.1	0.011	15.9	0.0	1.7	2	0	0	2	2	2	1	TrkA-N	domain
Sacchrp_dh_NADP	PF03435.18	gi|529077636|ref|YP_008376639.1|	-	0.0073	16.6	0.0	0.014	15.7	0.0	1.4	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
Glyco_trans_4_4	PF13579.6	gi|529077636|ref|YP_008376639.1|	-	0.014	15.9	0.1	0.029	14.8	0.1	1.6	1	0	0	1	1	1	0	Glycosyl	transferase	4-like	domain
KR	PF08659.10	gi|529077636|ref|YP_008376639.1|	-	0.025	14.5	0.0	0.25	11.3	0.0	2.3	2	1	0	2	2	2	0	KR	domain
Glyco_transf_4	PF13439.6	gi|529077636|ref|YP_008376639.1|	-	0.045	13.8	0.0	0.089	12.8	0.0	1.5	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
Tubulin	PF00091.25	gi|529077637|ref|YP_008376640.1|	-	6.9e-27	94.9	0.0	1.2e-26	94.1	0.0	1.4	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
Tubulin_2	PF13809.6	gi|529077637|ref|YP_008376640.1|	-	0.069	12.3	0.1	0.11	11.7	0.1	1.4	1	1	0	1	1	1	0	Tubulin	like
DUF4366	PF14283.6	gi|529077638|ref|YP_008376641.1|	-	0.0072	16.4	0.1	0.012	15.6	0.1	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4366)
PTS_IIA	PF02255.16	gi|529077638|ref|YP_008376641.1|	-	0.19	11.8	0.7	0.48	10.5	0.2	1.8	1	1	1	2	2	2	0	PTS	system,	Lactose/Cellobiose	specific	IIA	subunit
CofC	PF01983.16	gi|529077639|ref|YP_008376642.1|	-	6.7e-39	133.3	0.0	8e-39	133.1	0.0	1.0	1	0	0	1	1	1	1	Guanylyl	transferase	CofC	like
NTP_transf_3	PF12804.7	gi|529077639|ref|YP_008376642.1|	-	0.0017	18.7	1.1	0.0024	18.2	1.1	1.3	1	1	0	1	1	1	1	MobA-like	NTP	transferase	domain
Radical_SAM	PF04055.21	gi|529077640|ref|YP_008376643.1|	-	1.7e-14	54.5	0.0	3.6e-14	53.5	0.0	1.6	1	1	0	1	1	1	1	Radical	SAM	superfamily
CbiZ	PF01955.18	gi|529077640|ref|YP_008376643.1|	-	0.067	13.3	0.0	0.1	12.7	0.0	1.3	1	0	0	1	1	1	0	Adenosylcobinamide	amidohydrolase
zinc_ribbon_2	PF13240.6	gi|529077641|ref|YP_008376644.1|	-	0.00037	20.1	3.7	0.00055	19.6	3.7	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|529077641|ref|YP_008376644.1|	-	0.0006	19.8	0.6	0.00095	19.1	0.6	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|529077641|ref|YP_008376644.1|	-	0.011	15.1	1.1	0.023	14.1	1.1	1.6	1	0	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|529077641|ref|YP_008376644.1|	-	0.012	16.3	0.5	0.015	16.0	0.5	1.2	1	0	0	1	1	1	0	zinc-ribbon	family
zf-RanBP	PF00641.18	gi|529077641|ref|YP_008376644.1|	-	0.024	13.9	1.5	0.039	13.3	1.5	1.3	1	0	0	1	1	1	0	Zn-finger	in	Ran	binding	protein	and	others
DNA_RNApol_7kD	PF03604.13	gi|529077641|ref|YP_008376644.1|	-	0.027	14.2	0.7	1.4	8.7	0.1	2.2	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
YrhK	PF14145.6	gi|529077641|ref|YP_008376644.1|	-	0.035	14.0	2.4	0.067	13.1	0.4	1.9	2	0	0	2	2	2	0	YrhK-like	protein
PhnA_Zn_Ribbon	PF08274.12	gi|529077641|ref|YP_008376644.1|	-	0.083	12.9	3.5	0.76	9.8	0.1	2.3	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
HypA	PF01155.19	gi|529077641|ref|YP_008376644.1|	-	0.12	12.5	0.6	0.17	11.9	0.6	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Phage_holin_3_6	PF07332.11	gi|529077641|ref|YP_008376644.1|	-	0.14	12.2	3.7	0.17	11.9	3.7	1.1	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF3797	PF12677.7	gi|529077641|ref|YP_008376644.1|	-	1	9.3	4.8	0.51	10.3	0.3	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
DUF3040	PF11239.8	gi|529077641|ref|YP_008376644.1|	-	3.5	8.0	6.4	16	5.8	1.2	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3040)
Radical_SAM	PF04055.21	gi|529077642|ref|YP_008376645.1|	-	2.5e-14	54.0	0.1	5.1e-14	53.0	0.1	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
MatE	PF01554.18	gi|529077643|ref|YP_008376646.1|	-	6.3e-56	188.5	34.2	4.5e-33	114.2	11.3	3.0	2	1	0	3	3	3	2	MatE
Polysacc_synt_C	PF14667.6	gi|529077643|ref|YP_008376646.1|	-	0.0022	18.1	8.7	0.0022	18.1	8.7	5.5	4	3	0	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
L6_membrane	PF05805.12	gi|529077643|ref|YP_008376646.1|	-	2.9	7.4	7.6	0.38	10.3	0.6	2.8	2	1	0	2	2	2	0	L6	membrane	protein
Peptidase_M73	PF12389.8	gi|529077646|ref|YP_008376649.1|	-	0.00027	20.8	0.4	0.0019	18.1	0.0	1.9	1	1	1	2	2	2	1	Camelysin	metallo-endopeptidase
Na_Ca_ex	PF01699.24	gi|529077647|ref|YP_008376650.1|	-	1e-40	139.2	30.7	3e-22	79.2	13.4	2.0	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
DUF2070	PF09843.9	gi|529077647|ref|YP_008376650.1|	-	0.32	9.2	11.9	0.0066	14.8	3.8	2.0	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2070)
TrkA_N	PF02254.18	gi|529077648|ref|YP_008376651.1|	-	5e-33	113.8	3.4	8.8e-33	113.0	3.4	1.4	1	0	0	1	1	1	1	TrkA-N	domain
Na_H_Exchanger	PF00999.21	gi|529077648|ref|YP_008376651.1|	-	8.3e-27	93.9	48.2	1.1e-26	93.6	48.2	1.1	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
TrkA_C	PF02080.21	gi|529077648|ref|YP_008376651.1|	-	1.8e-12	46.9	1.6	4.1e-12	45.8	0.0	2.3	3	0	0	3	3	2	1	TrkA-C	domain
NAD_binding_7	PF13241.6	gi|529077648|ref|YP_008376651.1|	-	2.9e-06	27.7	0.3	7.1e-06	26.4	0.3	1.6	1	0	0	1	1	1	1	Putative	NAD(P)-binding
F420_oxidored	PF03807.17	gi|529077648|ref|YP_008376651.1|	-	7.2e-05	23.3	2.0	0.0019	18.7	0.3	3.2	2	1	0	3	3	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_10	PF13460.6	gi|529077648|ref|YP_008376651.1|	-	8e-05	22.6	4.1	0.0002	21.3	4.2	1.6	1	1	0	1	1	1	1	NAD(P)H-binding
Epimerase	PF01370.21	gi|529077648|ref|YP_008376651.1|	-	0.00014	21.4	0.4	0.00022	20.8	0.4	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
ApbA	PF02558.16	gi|529077648|ref|YP_008376651.1|	-	0.00054	19.6	0.1	0.0013	18.4	0.1	1.7	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
FAD_binding_3	PF01494.19	gi|529077648|ref|YP_008376651.1|	-	0.00079	18.8	0.1	0.0011	18.3	0.1	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|529077648|ref|YP_008376651.1|	-	0.0014	18.9	0.9	0.0037	17.5	0.8	1.8	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|529077648|ref|YP_008376651.1|	-	0.002	17.8	0.3	0.0032	17.1	0.3	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|529077648|ref|YP_008376651.1|	-	0.0095	15.3	0.2	0.017	14.5	0.2	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|529077648|ref|YP_008376651.1|	-	0.01	15.8	0.0	0.028	14.4	0.0	1.8	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
DAO	PF01266.24	gi|529077648|ref|YP_008376651.1|	-	0.013	15.1	0.1	0.013	15.1	0.1	1.7	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
PglD_N	PF17836.1	gi|529077648|ref|YP_008376651.1|	-	0.03	15.0	0.6	0.062	13.9	0.6	1.6	1	0	0	1	1	1	0	PglD	N-terminal	domain
XdhC_C	PF13478.6	gi|529077648|ref|YP_008376651.1|	-	0.034	14.6	0.1	0.082	13.4	0.1	1.7	1	1	0	1	1	1	0	XdhC	Rossmann	domain
Pyr_redox	PF00070.27	gi|529077648|ref|YP_008376651.1|	-	0.051	14.1	0.4	0.25	11.9	0.4	2.2	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Castor_Poll_mid	PF06241.12	gi|529077648|ref|YP_008376651.1|	-	0.18	11.8	0.0	0.47	10.5	0.0	1.6	1	0	0	1	1	1	0	Castor	and	Pollux,	part	of	voltage-gated	ion	channel
Lactamase_B	PF00753.27	gi|529077649|ref|YP_008376652.1|	-	1e-26	94.2	9.9	1e-26	94.2	9.9	1.5	2	0	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|529077649|ref|YP_008376652.1|	-	0.00014	21.4	4.3	0.00019	21.0	2.4	2.2	2	1	0	2	2	2	1	Beta-lactamase	superfamily	domain
Ribosomal_L40e	PF01020.17	gi|529077650|ref|YP_008376653.1|	-	1.1e-06	28.4	4.5	1.4e-06	28.0	4.5	1.2	1	0	0	1	1	1	1	Ribosomal	L40e	family
zinc_ribbon_2	PF13240.6	gi|529077650|ref|YP_008376653.1|	-	0.00032	20.3	1.7	0.00046	19.8	1.7	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|529077650|ref|YP_008376653.1|	-	0.0017	18.4	0.8	0.0017	18.4	0.8	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
DNA_RNApol_7kD	PF03604.13	gi|529077650|ref|YP_008376653.1|	-	0.069	12.9	6.7	0.15	11.8	6.7	1.6	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
DHHC	PF01529.20	gi|529077650|ref|YP_008376653.1|	-	0.13	12.4	1.1	0.13	12.3	1.1	1.1	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
MAAL_C	PF07476.11	gi|529077651|ref|YP_008376654.1|	-	0.26	10.4	0.0	0.4	9.8	0.0	1.2	1	0	0	1	1	1	0	Methylaspartate	ammonia-lyase	C-terminus
Ribo_biogen_C	PF04034.13	gi|529077652|ref|YP_008376655.1|	-	1.6e-45	154.0	0.0	1.9e-45	153.7	0.0	1.1	1	0	0	1	1	1	1	Ribosome	biogenesis	protein,	C-terminal
RLI	PF04068.15	gi|529077652|ref|YP_008376655.1|	-	1.2e-07	31.4	0.0	2e-07	30.7	0.0	1.3	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
AhpC-TSA	PF00578.21	gi|529077653|ref|YP_008376656.1|	-	4e-26	91.4	0.0	8e-26	90.4	0.0	1.5	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|529077653|ref|YP_008376656.1|	-	5.5e-17	61.9	0.0	9.9e-17	61.0	0.0	1.4	1	0	0	1	1	1	1	Redoxin
DUF1771	PF08590.10	gi|529077653|ref|YP_008376656.1|	-	0.15	12.5	1.0	0.4	11.1	1.0	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1771)
SnoaL_2	PF12680.7	gi|529077654|ref|YP_008376657.1|	-	3.2e-11	43.8	0.7	3.7e-11	43.6	0.7	1.0	1	0	0	1	1	1	1	SnoaL-like	domain
SnoaL_4	PF13577.6	gi|529077654|ref|YP_008376657.1|	-	7.7e-05	22.8	0.0	0.00015	21.9	0.0	1.5	1	1	1	2	2	2	1	SnoaL-like	domain
DUF4440	PF14534.6	gi|529077654|ref|YP_008376657.1|	-	0.0016	18.9	0.3	0.025	15.0	0.0	2.0	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4440)
LEH	PF07858.12	gi|529077654|ref|YP_008376657.1|	-	0.0085	16.2	0.0	0.01	15.9	0.0	1.0	1	0	0	1	1	1	1	Limonene-1,2-epoxide	hydrolase	catalytic	domain
NTF2	PF02136.20	gi|529077654|ref|YP_008376657.1|	-	0.053	14.1	0.0	0.055	14.0	0.0	1.2	1	0	0	1	1	1	0	Nuclear	transport	factor	2	(NTF2)	domain
SnoaL_3	PF13474.6	gi|529077654|ref|YP_008376657.1|	-	0.11	12.7	0.0	0.15	12.3	0.0	1.2	1	0	0	1	1	1	0	SnoaL-like	domain
SRP54	PF00448.22	gi|529077655|ref|YP_008376658.1|	-	2.2e-67	226.5	0.1	3.8e-67	225.7	0.1	1.4	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP54_N	PF02881.19	gi|529077655|ref|YP_008376658.1|	-	5.7e-12	45.7	0.8	1.4e-11	44.4	0.8	1.6	1	0	0	1	1	1	1	SRP54-type	protein,	helical	bundle	domain
APS_kinase	PF01583.20	gi|529077655|ref|YP_008376658.1|	-	1.1e-06	28.6	0.0	2.5e-06	27.4	0.0	1.6	1	0	0	1	1	1	1	Adenylylsulphate	kinase
Zeta_toxin	PF06414.12	gi|529077655|ref|YP_008376658.1|	-	3.6e-05	23.1	0.0	6.2e-05	22.4	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
CbiA	PF01656.23	gi|529077655|ref|YP_008376658.1|	-	0.00027	21.0	0.0	0.0006	19.9	0.0	1.7	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_17	PF13207.6	gi|529077655|ref|YP_008376658.1|	-	0.00033	21.1	0.0	0.001	19.5	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
Thymidylate_kin	PF02223.17	gi|529077655|ref|YP_008376658.1|	-	0.00065	19.4	0.0	0.0094	15.6	0.0	2.2	2	0	0	2	2	2	1	Thymidylate	kinase
AAA_16	PF13191.6	gi|529077655|ref|YP_008376658.1|	-	0.0015	18.9	5.1	0.0019	18.6	0.0	2.5	2	0	0	2	2	2	1	AAA	ATPase	domain
NTPase_1	PF03266.15	gi|529077655|ref|YP_008376658.1|	-	0.0026	17.7	0.1	0.0053	16.7	0.1	1.4	1	0	0	1	1	1	1	NTPase
MeaB	PF03308.16	gi|529077655|ref|YP_008376658.1|	-	0.0038	16.2	0.0	0.0072	15.3	0.0	1.4	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_28	PF13521.6	gi|529077655|ref|YP_008376658.1|	-	0.0047	17.2	0.1	0.0047	17.2	0.1	2.9	2	2	0	2	2	2	1	AAA	domain
KTI12	PF08433.10	gi|529077655|ref|YP_008376658.1|	-	0.011	15.2	0.0	0.017	14.6	0.0	1.3	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA_19	PF13245.6	gi|529077655|ref|YP_008376658.1|	-	0.013	15.8	0.1	0.013	15.8	0.1	1.7	2	0	0	2	2	1	0	AAA	domain
AAA_22	PF13401.6	gi|529077655|ref|YP_008376658.1|	-	0.013	15.8	0.1	0.069	13.4	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
cobW	PF02492.19	gi|529077655|ref|YP_008376658.1|	-	0.027	14.1	0.6	0.056	13.0	0.1	1.8	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
DUF2075	PF09848.9	gi|529077655|ref|YP_008376658.1|	-	0.027	13.7	0.0	0.049	12.9	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
ParA	PF10609.9	gi|529077655|ref|YP_008376658.1|	-	0.029	13.8	0.0	0.051	13.0	0.0	1.3	1	0	0	1	1	1	0	NUBPL	iron-transfer	P-loop	NTPase
PPK2	PF03976.14	gi|529077655|ref|YP_008376658.1|	-	0.029	13.9	0.0	0.05	13.1	0.0	1.3	1	0	0	1	1	1	0	Polyphosphate	kinase	2	(PPK2)
AAA_33	PF13671.6	gi|529077655|ref|YP_008376658.1|	-	0.029	14.5	1.7	0.044	14.0	0.1	2.3	3	1	0	3	3	2	0	AAA	domain
AAA_31	PF13614.6	gi|529077655|ref|YP_008376658.1|	-	0.049	13.5	0.1	0.3	11.0	0.0	2.2	3	0	0	3	3	3	0	AAA	domain
MobB	PF03205.14	gi|529077655|ref|YP_008376658.1|	-	0.052	13.4	0.1	0.13	12.1	0.1	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_7	PF12775.7	gi|529077655|ref|YP_008376658.1|	-	0.054	13.0	0.0	0.15	11.5	0.0	1.7	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
AAA_18	PF13238.6	gi|529077655|ref|YP_008376658.1|	-	0.062	13.8	0.0	0.16	12.5	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
ATP_bind_1	PF03029.17	gi|529077655|ref|YP_008376658.1|	-	0.063	13.1	0.1	0.11	12.2	0.1	1.4	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
ArsA_ATPase	PF02374.15	gi|529077655|ref|YP_008376658.1|	-	0.066	12.4	0.5	0.14	11.3	0.1	1.6	2	0	0	2	2	2	0	Anion-transporting	ATPase
AAA	PF00004.29	gi|529077655|ref|YP_008376658.1|	-	0.079	13.4	0.1	0.21	12.0	0.1	2.0	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NACHT	PF05729.12	gi|529077655|ref|YP_008376658.1|	-	0.1	12.5	0.0	0.17	11.8	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
RsgA_GTPase	PF03193.16	gi|529077655|ref|YP_008376658.1|	-	0.12	12.3	0.0	0.24	11.3	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
LytR_C	PF13399.6	gi|529077655|ref|YP_008376658.1|	-	0.14	13.2	0.5	0.14	13.2	0.5	3.5	3	1	0	3	3	1	0	LytR	cell	envelope-related	transcriptional	attenuator
AAA_14	PF13173.6	gi|529077655|ref|YP_008376658.1|	-	0.15	12.1	0.0	0.38	10.8	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
6PF2K	PF01591.18	gi|529077655|ref|YP_008376658.1|	-	0.21	10.9	0.0	0.36	10.1	0.0	1.3	1	0	0	1	1	1	0	6-phosphofructo-2-kinase
Prefoldin	PF02996.17	gi|529077656|ref|YP_008376659.1|	-	1.1e-25	89.8	10.6	1.1e-25	89.8	10.6	2.3	1	1	2	3	3	3	1	Prefoldin	subunit
HAUS-augmin3	PF14932.6	gi|529077656|ref|YP_008376659.1|	-	0.00097	18.8	20.5	0.0067	16.0	0.6	2.1	2	0	0	2	2	2	1	HAUS	augmin-like	complex	subunit	3
Prefoldin_2	PF01920.20	gi|529077656|ref|YP_008376659.1|	-	0.0011	18.9	12.3	0.0011	18.9	12.3	3.8	1	1	1	3	3	2	1	Prefoldin	subunit
bZIP_1	PF00170.21	gi|529077656|ref|YP_008376659.1|	-	0.0038	17.3	1.8	0.0038	17.3	1.8	2.8	2	1	1	3	3	2	1	bZIP	transcription	factor
Spc24	PF08286.11	gi|529077656|ref|YP_008376659.1|	-	0.0044	17.2	20.8	0.022	15.0	0.6	2.3	2	0	0	2	2	2	1	Spc24	subunit	of	Ndc80
YabA	PF06156.13	gi|529077656|ref|YP_008376659.1|	-	0.0053	17.4	19.2	0.049	14.3	0.8	2.1	2	0	0	2	2	2	1	Initiation	control	protein	YabA
APG6_N	PF17675.1	gi|529077656|ref|YP_008376659.1|	-	0.0068	16.9	34.5	0.18	12.3	18.6	2.2	2	0	0	2	2	2	2	Apg6	coiled-coil	region
TSC22	PF01166.18	gi|529077656|ref|YP_008376659.1|	-	0.0072	16.6	8.7	0.0072	16.6	8.7	2.6	2	1	0	2	2	2	1	TSC-22/dip/bun	family
Sipho_Gp157	PF05565.11	gi|529077656|ref|YP_008376659.1|	-	0.0076	16.3	18.0	0.37	10.8	9.2	2.3	2	0	0	2	2	2	2	Siphovirus	Gp157
DEK_C	PF08766.11	gi|529077656|ref|YP_008376659.1|	-	0.0093	15.9	9.3	0.076	12.9	0.6	3.1	3	0	0	3	3	2	1	DEK	C	terminal	domain
Tektin	PF03148.14	gi|529077656|ref|YP_008376659.1|	-	0.011	14.5	19.4	0.21	10.3	4.2	2.3	2	0	0	2	2	2	0	Tektin	family
NPV_P10	PF05531.12	gi|529077656|ref|YP_008376659.1|	-	0.013	16.0	21.5	0.14	12.6	3.8	2.7	2	2	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
DivIC	PF04977.15	gi|529077656|ref|YP_008376659.1|	-	0.014	15.2	8.7	0.014	15.2	8.7	3.2	2	1	1	3	3	2	0	Septum	formation	initiator
Tropomyosin_1	PF12718.7	gi|529077656|ref|YP_008376659.1|	-	0.014	15.5	29.3	0.041	14.0	5.2	2.1	2	0	0	2	2	2	0	Tropomyosin	like
CENP-F_leu_zip	PF10473.9	gi|529077656|ref|YP_008376659.1|	-	0.018	15.1	25.3	0.13	12.3	3.1	2.4	2	1	0	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF4618	PF15397.6	gi|529077656|ref|YP_008376659.1|	-	0.025	14.0	21.6	0.14	11.6	3.1	2.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4618)
Laminin_II	PF06009.12	gi|529077656|ref|YP_008376659.1|	-	0.027	14.5	13.4	0.64	10.0	5.3	2.2	2	0	0	2	2	2	0	Laminin	Domain	II
TMF_TATA_bd	PF12325.8	gi|529077656|ref|YP_008376659.1|	-	0.027	14.7	23.7	0.063	13.5	2.8	2.3	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
BLOC1_2	PF10046.9	gi|529077656|ref|YP_008376659.1|	-	0.035	14.4	23.0	0.13	12.6	2.6	3.1	2	1	1	3	3	3	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
ATP-synt_D	PF01813.17	gi|529077656|ref|YP_008376659.1|	-	0.037	13.9	12.9	1.2	9.0	6.7	2.1	2	0	0	2	2	2	0	ATP	synthase	subunit	D
Syntaxin_2	PF14523.6	gi|529077656|ref|YP_008376659.1|	-	0.037	14.4	14.4	0.36	11.2	5.8	2.2	2	0	0	2	2	2	0	Syntaxin-like	protein
Ax_dynein_light	PF10211.9	gi|529077656|ref|YP_008376659.1|	-	0.039	13.9	25.6	0.22	11.5	2.9	2.1	2	0	0	2	2	2	0	Axonemal	dynein	light	chain
Fib_alpha	PF08702.10	gi|529077656|ref|YP_008376659.1|	-	0.055	13.6	18.4	0.91	9.7	11.2	2.2	1	1	0	2	2	2	0	Fibrinogen	alpha/beta	chain	family
Jnk-SapK_ap_N	PF09744.9	gi|529077656|ref|YP_008376659.1|	-	0.061	13.6	27.4	0.13	12.5	15.5	2.1	2	0	0	2	2	2	0	JNK_SAPK-associated	protein-1
YlqD	PF11068.8	gi|529077656|ref|YP_008376659.1|	-	0.069	13.5	33.4	0.3	11.5	4.2	2.4	2	0	0	2	2	2	0	YlqD	protein
JIP_LZII	PF16471.5	gi|529077656|ref|YP_008376659.1|	-	0.071	13.3	17.7	0.5	10.6	5.3	2.4	2	0	0	2	2	2	0	JNK-interacting	protein	leucine	zipper	II
FapA	PF03961.13	gi|529077656|ref|YP_008376659.1|	-	0.075	11.6	17.7	0.29	9.7	7.6	2.0	1	1	1	2	2	2	0	Flagellar	Assembly	Protein	A
Nmad5	PF18757.1	gi|529077656|ref|YP_008376659.1|	-	0.076	13.2	10.5	0.14	12.3	7.9	2.0	1	1	1	2	2	2	0	Nucleotide	modification	associated	domain	5
DUF4337	PF14235.6	gi|529077656|ref|YP_008376659.1|	-	0.077	13.1	19.3	0.31	11.1	10.5	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4337)
ORF6C	PF10552.9	gi|529077656|ref|YP_008376659.1|	-	0.081	13.0	13.1	0.25	11.5	0.5	2.3	2	0	0	2	2	2	0	ORF6C	domain
Sec34	PF04136.15	gi|529077656|ref|YP_008376659.1|	-	0.097	12.5	19.9	0.32	10.9	1.6	2.1	2	0	0	2	2	2	0	Sec34-like	family
Spc7	PF08317.11	gi|529077656|ref|YP_008376659.1|	-	0.1	11.5	26.6	0.14	11.0	4.8	2.1	2	0	0	2	2	2	0	Spc7	kinetochore	protein
Syntaxin-6_N	PF09177.11	gi|529077656|ref|YP_008376659.1|	-	0.1	13.1	14.9	0.53	10.9	1.6	2.2	2	0	0	2	2	2	0	Syntaxin	6,	N-terminal
DUF2312	PF10073.9	gi|529077656|ref|YP_008376659.1|	-	0.12	12.0	16.3	0.28	10.9	5.8	2.7	2	1	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2312)
GAS	PF13851.6	gi|529077656|ref|YP_008376659.1|	-	0.13	11.6	22.6	0.42	9.9	2.8	2.2	2	0	0	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
THOC7	PF05615.13	gi|529077656|ref|YP_008376659.1|	-	0.13	12.6	26.7	0.12	12.7	5.0	2.6	2	1	0	2	2	2	0	Tho	complex	subunit	7
DUF1664	PF07889.12	gi|529077656|ref|YP_008376659.1|	-	0.13	12.3	18.9	0.9	9.6	3.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
DUF4795	PF16043.5	gi|529077656|ref|YP_008376659.1|	-	0.14	11.8	17.7	0.86	9.2	1.2	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4795)
UPF0242	PF06785.11	gi|529077656|ref|YP_008376659.1|	-	0.15	12.2	25.0	0.26	11.3	13.6	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
ZapB	PF06005.12	gi|529077656|ref|YP_008376659.1|	-	0.2	12.1	37.1	0.26	11.8	19.6	2.4	1	1	1	2	2	2	0	Cell	division	protein	ZapB
DASH_Dam1	PF08653.10	gi|529077656|ref|YP_008376659.1|	-	0.21	11.4	11.4	4.8	7.0	0.4	3.1	2	2	0	2	2	2	0	DASH	complex	subunit	Dam1
Cytochrom_C_2	PF01322.20	gi|529077656|ref|YP_008376659.1|	-	0.21	12.5	10.1	0.25	12.3	5.3	2.1	2	0	0	2	2	2	0	Cytochrome	C'
OmpH	PF03938.14	gi|529077656|ref|YP_008376659.1|	-	0.23	11.8	36.9	0.8	10.0	23.7	2.1	2	0	0	2	2	2	0	Outer	membrane	protein	(OmpH-like)
AAA_13	PF13166.6	gi|529077656|ref|YP_008376659.1|	-	0.28	9.8	23.5	0.57	8.8	9.7	2.0	2	0	0	2	2	2	0	AAA	domain
CorA	PF01544.18	gi|529077656|ref|YP_008376659.1|	-	0.29	10.4	18.7	1.5	8.0	18.7	1.8	1	1	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
DUF4446	PF14584.6	gi|529077656|ref|YP_008376659.1|	-	0.33	10.9	10.9	4.9	7.1	5.6	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4446)
LCD1	PF09798.9	gi|529077656|ref|YP_008376659.1|	-	0.36	9.3	24.1	0.24	9.9	15.8	2.0	2	0	0	2	2	2	0	DNA	damage	checkpoint	protein
Seryl_tRNA_N	PF02403.22	gi|529077656|ref|YP_008376659.1|	-	0.36	11.1	22.6	0.21	11.9	2.9	2.6	2	1	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
TFR_dimer	PF04253.15	gi|529077656|ref|YP_008376659.1|	-	0.37	10.9	8.2	8.3	6.5	3.6	2.6	2	1	0	2	2	2	0	Transferrin	receptor-like	dimerisation	domain
Rh5	PF18515.1	gi|529077656|ref|YP_008376659.1|	-	0.4	9.9	9.1	1.9	7.7	2.5	2.0	2	0	0	2	2	2	0	Rh5	coiled-coil	domain
DUF3552	PF12072.8	gi|529077656|ref|YP_008376659.1|	-	0.47	9.8	28.4	0.5	9.8	16.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3552)
HemX	PF04375.14	gi|529077656|ref|YP_008376659.1|	-	0.47	9.7	26.6	0.5	9.6	1.1	2.0	2	0	0	2	2	2	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Muted	PF14942.6	gi|529077656|ref|YP_008376659.1|	-	0.54	10.6	24.1	1.9	8.8	14.4	2.1	2	0	0	2	2	2	0	Organelle	biogenesis,	Muted-like	protein
MIS13	PF08202.11	gi|529077656|ref|YP_008376659.1|	-	0.56	9.4	13.2	0.83	8.9	13.2	1.2	1	0	0	1	1	1	0	Mis12-Mtw1	protein	family
AAA_lid_9	PF17871.1	gi|529077656|ref|YP_008376659.1|	-	0.58	10.1	15.5	1.2	9.1	7.6	2.4	2	0	0	2	2	2	0	AAA	lid	domain
Not3	PF04065.15	gi|529077656|ref|YP_008376659.1|	-	0.61	9.5	21.7	1.6	8.1	11.6	2.0	2	0	0	2	2	2	0	Not1	N-terminal	domain,	CCR4-Not	complex	component
DHR10	PF18595.1	gi|529077656|ref|YP_008376659.1|	-	0.65	10.1	36.0	1	9.4	5.9	2.2	2	0	0	2	2	2	0	Designed	helical	repeat	protein	10	domain
Golgin_A5	PF09787.9	gi|529077656|ref|YP_008376659.1|	-	0.68	9.3	28.6	0.32	10.4	17.9	2.0	2	0	0	2	2	2	0	Golgin	subfamily	A	member	5
DUF3450	PF11932.8	gi|529077656|ref|YP_008376659.1|	-	0.73	9.1	34.5	1.7	7.9	4.9	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
ABC_tran_CTD	PF16326.5	gi|529077656|ref|YP_008376659.1|	-	0.8	10.0	38.1	0.2	11.9	10.1	2.6	2	1	0	2	2	2	0	ABC	transporter	C-terminal	domain
zf-CpG_bind_C	PF12269.8	gi|529077656|ref|YP_008376659.1|	-	0.82	9.4	17.6	1.1	9.0	0.5	2.0	2	0	0	2	2	2	0	CpG	binding	protein	zinc	finger	C	terminal	domain
Synaptobrevin	PF00957.21	gi|529077656|ref|YP_008376659.1|	-	0.84	9.5	17.5	0.13	12.1	7.0	2.3	2	0	0	2	2	2	0	Synaptobrevin
BshC	PF10079.9	gi|529077656|ref|YP_008376659.1|	-	0.9	8.2	16.7	0.89	8.2	10.1	2.0	2	0	0	2	2	2	0	Bacillithiol	biosynthesis	BshC
FH2	PF02181.23	gi|529077656|ref|YP_008376659.1|	-	1.1	8.3	11.4	0.31	10.1	4.4	2.1	2	0	0	2	2	2	0	Formin	Homology	2	Domain
DASH_Spc19	PF08287.11	gi|529077656|ref|YP_008376659.1|	-	1.1	9.1	20.7	3.3	7.6	13.3	2.2	2	0	0	2	2	2	0	Spc19
Mod_r	PF07200.13	gi|529077656|ref|YP_008376659.1|	-	1.1	9.3	24.4	1.6	8.8	13.3	2.1	2	0	0	2	2	2	0	Modifier	of	rudimentary	(Mod(r))	protein
DUF724	PF05266.14	gi|529077656|ref|YP_008376659.1|	-	1.2	9.0	19.7	3.4	7.5	10.6	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF724)
DUF4988	PF16378.5	gi|529077656|ref|YP_008376659.1|	-	1.2	8.7	9.4	5.5	6.6	0.4	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function
FliD_C	PF07195.12	gi|529077656|ref|YP_008376659.1|	-	1.3	8.4	15.6	0.5	9.7	8.7	2.1	2	0	0	2	2	2	0	Flagellar	hook-associated	protein	2	C-terminus
DUF1515	PF07439.11	gi|529077656|ref|YP_008376659.1|	-	1.3	9.1	11.9	0.47	10.5	0.3	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1515)
Cluap1	PF10234.9	gi|529077656|ref|YP_008376659.1|	-	1.5	8.1	19.6	1.6	8.0	1.6	2.0	2	0	0	2	2	2	0	Clusterin-associated	protein-1
CENP-H	PF05837.12	gi|529077656|ref|YP_008376659.1|	-	1.6	9.2	21.2	1.1	9.7	9.3	2.2	2	0	0	2	2	2	0	Centromere	protein	H	(CENP-H)
DUF948	PF06103.11	gi|529077656|ref|YP_008376659.1|	-	1.6	9.0	14.5	4	7.8	1.8	2.2	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
MctB	PF11382.8	gi|529077656|ref|YP_008376659.1|	-	1.7	8.3	16.0	2.4	7.8	1.1	2.4	2	0	0	2	2	2	0	Copper	transport	outer	membrane	protein,	MctB
UPF0449	PF15136.6	gi|529077656|ref|YP_008376659.1|	-	1.7	9.2	19.9	2.6	8.6	2.8	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0449
Cnn_1N	PF07989.11	gi|529077656|ref|YP_008376659.1|	-	1.7	8.8	24.6	0.98	9.6	4.9	2.5	2	1	0	2	2	2	0	Centrosomin	N-terminal	motif	1
bZIP_2	PF07716.15	gi|529077656|ref|YP_008376659.1|	-	1.8	8.7	25.6	5.6	7.1	3.6	3.4	2	1	0	2	2	2	0	Basic	region	leucine	zipper
Occludin_ELL	PF07303.13	gi|529077656|ref|YP_008376659.1|	-	2.1	9.1	15.8	6.1	7.6	7.9	2.2	2	0	0	2	2	2	0	Occludin	homology	domain
Cauli_AT	PF03233.13	gi|529077656|ref|YP_008376659.1|	-	2.2	8.2	8.3	5.6	6.9	0.2	2.2	2	0	0	2	2	2	0	Aphid	transmission	protein
PHM7_cyt	PF14703.6	gi|529077656|ref|YP_008376659.1|	-	2.4	8.4	11.7	7.9	6.7	0.2	2.3	2	0	0	2	2	2	0	Cytosolic	domain	of	10TM	putative	phosphate	transporter
LPP	PF04728.13	gi|529077656|ref|YP_008376659.1|	-	2.4	8.6	26.0	1.6	9.2	13.8	3.6	2	2	1	3	3	2	0	Lipoprotein	leucine-zipper
DivIVA	PF05103.13	gi|529077656|ref|YP_008376659.1|	-	2.4	8.2	24.6	2.8	8.1	5.4	2.3	2	0	0	2	2	2	0	DivIVA	protein
Fzo_mitofusin	PF04799.13	gi|529077656|ref|YP_008376659.1|	-	2.5	7.6	18.2	5.2	6.6	8.3	2.2	2	0	0	2	2	2	0	fzo-like	conserved	region
SHE3	PF17078.5	gi|529077656|ref|YP_008376659.1|	-	2.8	7.6	21.4	5.1	6.8	12.4	2.1	2	0	0	2	2	2	0	SWI5-dependent	HO	expression	protein	3
Med9	PF07544.13	gi|529077656|ref|YP_008376659.1|	-	2.9	8.1	20.7	1.8	8.7	1.3	2.4	2	0	0	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
DUF2730	PF10805.8	gi|529077656|ref|YP_008376659.1|	-	2.9	8.0	12.8	4.4	7.5	1.3	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2730)
FlaC_arch	PF05377.11	gi|529077656|ref|YP_008376659.1|	-	3	8.3	20.1	2.2	8.7	4.3	2.9	2	2	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
TMPIT	PF07851.13	gi|529077656|ref|YP_008376659.1|	-	3	7.0	15.1	9.6	5.3	0.2	2.0	2	0	0	2	2	2	0	TMPIT-like	protein
WXG100	PF06013.12	gi|529077656|ref|YP_008376659.1|	-	3.4	8.0	28.4	1.7	8.9	2.5	2.4	2	0	0	2	2	2	0	Proteins	of	100	residues	with	WXG
ADIP	PF11559.8	gi|529077656|ref|YP_008376659.1|	-	3.4	7.8	24.4	2.3	8.3	14.4	2.1	2	0	0	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
Nsp1_C	PF05064.13	gi|529077656|ref|YP_008376659.1|	-	3.9	7.3	22.4	2.6	7.9	3.8	2.4	2	0	0	2	2	2	0	Nsp1-like	C-terminal	region
COG2	PF06148.11	gi|529077656|ref|YP_008376659.1|	-	4.3	7.4	15.0	1.9	8.6	1.0	2.2	2	0	0	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF5082	PF16888.5	gi|529077656|ref|YP_008376659.1|	-	4.6	7.6	25.7	3.5	7.9	3.4	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF5082)
MCU	PF04678.13	gi|529077656|ref|YP_008376659.1|	-	4.8	7.2	19.3	5.5	7.1	2.2	2.3	1	1	1	2	2	2	0	Mitochondrial	calcium	uniporter
Hemagglutinin	PF00509.18	gi|529077656|ref|YP_008376659.1|	-	5.2	5.4	8.0	6	5.2	0.2	2.0	2	0	0	2	2	2	0	Haemagglutinin
DUF3375	PF11855.8	gi|529077656|ref|YP_008376659.1|	-	5.5	5.8	23.1	4.3	6.1	10.9	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3375)
DNA_pol_delta_4	PF04081.13	gi|529077656|ref|YP_008376659.1|	-	6	7.2	13.8	4.3	7.7	0.3	2.1	2	0	0	2	2	2	0	DNA	polymerase	delta,	subunit	4
Phage_GPO	PF05929.11	gi|529077656|ref|YP_008376659.1|	-	6	6.4	19.4	2.4	7.7	0.9	2.0	2	0	0	2	2	2	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
VPS38	PF17649.1	gi|529077656|ref|YP_008376659.1|	-	6.3	5.6	12.5	9.7	4.9	0.3	2.0	2	0	0	2	2	2	0	Vacuolar	protein	sorting	38
L31	PF09784.9	gi|529077656|ref|YP_008376659.1|	-	6.5	7.2	7.3	15	6.1	3.0	2.3	2	0	0	2	2	2	0	Mitochondrial	ribosomal	protein	L31
Prominin	PF05478.11	gi|529077656|ref|YP_008376659.1|	-	6.5	4.6	12.6	3.6	5.4	0.8	2.0	2	0	0	2	2	2	0	Prominin
LMBR1	PF04791.16	gi|529077656|ref|YP_008376659.1|	-	6.5	5.5	9.5	7.7	5.3	9.5	1.1	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
AAA_23	PF13476.6	gi|529077656|ref|YP_008376659.1|	-	6.6	7.2	28.4	2.9	8.3	12.5	2.1	2	0	0	2	2	2	0	AAA	domain
DUF4407	PF14362.6	gi|529077656|ref|YP_008376659.1|	-	6.9	5.9	25.7	32	3.8	25.7	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
DUF932	PF06067.11	gi|529077656|ref|YP_008376659.1|	-	7.5	6.3	15.6	8	6.1	2.5	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF932)
HALZ	PF02183.18	gi|529077656|ref|YP_008376659.1|	-	8	6.8	16.7	0.27	11.5	2.3	2.9	2	1	1	3	3	3	0	Homeobox	associated	leucine	zipper
XhlA	PF10779.9	gi|529077656|ref|YP_008376659.1|	-	8.4	6.7	18.8	1.2	9.3	2.7	2.8	2	1	1	3	3	3	0	Haemolysin	XhlA
Cep57_MT_bd	PF06657.13	gi|529077656|ref|YP_008376659.1|	-	9.6	6.7	25.3	7.3	7.1	2.4	3.1	2	1	1	3	3	3	0	Centrosome	microtubule-binding	domain	of	Cep57
Ribosomal_L18A	PF01775.17	gi|529077657|ref|YP_008376660.1|	-	3.4e-10	40.1	0.0	3.7e-10	39.9	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	proteins	50S-L18Ae/60S-L20/60S-L18A
Aldolase	PF01081.19	gi|529077658|ref|YP_008376661.1|	-	2.8e-40	137.9	2.2	3.4e-40	137.6	2.2	1.0	1	0	0	1	1	1	1	KDPG	and	KHG	aldolase
TMP-TENI	PF02581.17	gi|529077658|ref|YP_008376661.1|	-	0.0011	18.4	2.8	0.012	15.0	2.8	2.9	1	1	0	1	1	1	1	Thiamine	monophosphate	synthase
PEP_hydrolase	PF09370.10	gi|529077658|ref|YP_008376661.1|	-	0.0081	15.4	0.8	0.029	13.6	0.4	2.0	1	1	1	2	2	2	1	Phosphoenolpyruvate	hydrolase-like
IMPDH	PF00478.25	gi|529077658|ref|YP_008376661.1|	-	0.032	13.3	4.4	1.9	7.4	3.6	2.2	2	0	0	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
Hexapep_2	PF14602.6	gi|529077658|ref|YP_008376661.1|	-	1	9.2	4.3	0.49	10.2	0.5	2.4	2	0	0	2	2	2	0	Hexapeptide	repeat	of	succinyl-transferase
TAT_signal	PF10518.9	gi|529077660|ref|YP_008376663.1|	-	0.0017	18.1	0.1	0.0027	17.5	0.1	1.3	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Aldo_ket_red	PF00248.21	gi|529077661|ref|YP_008376664.1|	-	2e-21	76.5	0.0	2.4e-21	76.2	0.0	1.2	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Methyltransf_11	PF08241.12	gi|529077662|ref|YP_008376665.1|	-	6e-12	46.1	0.1	1.1e-11	45.3	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|529077662|ref|YP_008376665.1|	-	8.1e-11	42.5	0.1	1.7e-10	41.5	0.1	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|529077662|ref|YP_008376665.1|	-	2.4e-05	24.2	0.0	3.1e-05	23.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_24	PF13578.6	gi|529077662|ref|YP_008376665.1|	-	0.0012	19.9	0.3	0.003	18.5	0.3	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
CobU	PF02283.16	gi|529077662|ref|YP_008376665.1|	-	0.0012	18.4	0.1	1.1	8.8	0.0	2.2	2	0	0	2	2	2	2	Cobinamide	kinase	/	cobinamide	phosphate	guanyltransferase
Methyltransf_12	PF08242.12	gi|529077662|ref|YP_008376665.1|	-	0.004	17.9	0.0	0.0068	17.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|529077662|ref|YP_008376665.1|	-	0.013	14.8	0.0	0.021	14.1	0.0	1.3	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
PE	PF00934.20	gi|529077662|ref|YP_008376665.1|	-	0.014	15.7	1.1	0.014	15.7	1.1	3.4	3	1	1	4	4	4	0	PE	family
RrnaAD	PF00398.20	gi|529077662|ref|YP_008376665.1|	-	0.022	13.8	0.0	0.03	13.4	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
CMAS	PF02353.20	gi|529077662|ref|YP_008376665.1|	-	0.039	13.2	0.0	0.061	12.6	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Methyltr_RsmB-F	PF01189.17	gi|529077662|ref|YP_008376665.1|	-	0.17	11.5	0.0	0.28	10.8	0.0	1.3	1	0	0	1	1	1	0	16S	rRNA	methyltransferase	RsmB/F
Polyketide_cyc2	PF10604.9	gi|529077663|ref|YP_008376666.1|	-	2.8e-06	27.6	1.8	3.3e-06	27.4	1.8	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc	PF03364.20	gi|529077663|ref|YP_008376666.1|	-	0.0095	16.1	0.0	0.01	16.1	0.0	1.2	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
HTH_10	PF04967.12	gi|529077664|ref|YP_008376667.1|	-	7.1e-19	67.4	0.1	2.6e-18	65.6	0.1	2.0	2	0	0	2	2	2	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|529077664|ref|YP_008376667.1|	-	1.6e-06	28.1	1.5	2.7e-06	27.3	0.8	1.8	1	1	0	1	1	1	1	GAF	and	HTH_10	associated	domain
HTH_IclR	PF09339.10	gi|529077664|ref|YP_008376667.1|	-	0.0034	17.1	0.6	0.0093	15.7	0.1	2.0	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|529077664|ref|YP_008376667.1|	-	0.0044	16.9	0.1	0.019	14.8	0.0	2.1	2	0	0	2	2	2	1	MarR	family
HTH_35	PF13693.6	gi|529077664|ref|YP_008376667.1|	-	0.0073	16.3	0.1	0.025	14.6	0.0	1.9	1	1	1	2	2	2	1	Winged	helix-turn-helix	DNA-binding
PuR_N	PF09182.10	gi|529077664|ref|YP_008376667.1|	-	0.016	15.1	0.0	0.031	14.2	0.0	1.4	1	0	0	1	1	1	0	Bacterial	purine	repressor,	N-terminal
NYD-SP28	PF14772.6	gi|529077664|ref|YP_008376667.1|	-	0.017	15.2	0.2	0.41	10.7	0.0	2.2	1	1	1	2	2	2	0	Sperm	tail
HTH_24	PF13412.6	gi|529077664|ref|YP_008376667.1|	-	0.017	14.7	0.0	0.035	13.7	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|529077664|ref|YP_008376667.1|	-	0.042	13.9	1.3	0.11	12.6	0.2	2.2	2	1	1	3	3	3	0	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|529077664|ref|YP_008376667.1|	-	0.079	13.2	0.0	0.15	12.2	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_5	PF01022.20	gi|529077664|ref|YP_008376667.1|	-	0.087	12.7	0.2	0.28	11.1	0.1	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|529077664|ref|YP_008376667.1|	-	0.12	12.3	0.0	0.27	11.2	0.0	1.6	1	0	0	1	1	1	0	MarR	family
DNA_photolyase	PF00875.18	gi|529077664|ref|YP_008376667.1|	-	0.13	12.2	0.3	0.21	11.6	0.3	1.4	1	1	0	1	1	1	0	DNA	photolyase
Inositol_P	PF00459.25	gi|529077665|ref|YP_008376668.1|	-	6.6e-43	147.2	0.4	7.8e-43	146.9	0.4	1.0	1	0	0	1	1	1	1	Inositol	monophosphatase	family
FBPase	PF00316.20	gi|529077665|ref|YP_008376668.1|	-	0.041	13.4	0.0	0.12	11.8	0.0	1.7	2	0	0	2	2	2	0	Fructose-1-6-bisphosphatase,	N-terminal	domain
Glyco_hydro_cc	PF11790.8	gi|529077667|ref|YP_008376670.1|	-	1.2e-08	34.9	0.0	1.8e-08	34.3	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	catalytic	core
Glyco_hydro_42	PF02449.15	gi|529077667|ref|YP_008376670.1|	-	0.0027	17.1	0.0	0.0051	16.2	0.0	1.4	1	0	0	1	1	1	1	Beta-galactosidase
Glyco_hydro_14	PF01373.17	gi|529077667|ref|YP_008376670.1|	-	0.0057	15.6	0.0	0.0091	15.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	14
Exo_endo_phos	PF03372.23	gi|529077668|ref|YP_008376671.1|	-	1.1e-20	74.2	0.5	1.7e-20	73.6	0.5	1.3	1	0	0	1	1	1	1	Endonuclease/Exonuclease/phosphatase	family
DUF1798	PF08807.10	gi|529077668|ref|YP_008376671.1|	-	0.19	11.8	0.2	0.34	11.1	0.2	1.3	1	0	0	1	1	1	0	Bacterial	domain	of	unknown	function	(DUF1798)
MFS_1	PF07690.16	gi|529077669|ref|YP_008376672.1|	-	1.1e-22	80.4	51.9	4.8e-17	61.9	22.2	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
OATP	PF03137.20	gi|529077669|ref|YP_008376672.1|	-	0.67	8.2	7.4	0.19	10.0	0.4	2.2	2	0	0	2	2	2	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
Regulator_TrmB	PF11495.8	gi|529077670|ref|YP_008376673.1|	-	6.6e-37	126.9	0.1	8.8e-37	126.5	0.1	1.1	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.19	gi|529077670|ref|YP_008376673.1|	-	5.4e-15	55.0	0.0	1.1e-14	54.0	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
PadR	PF03551.14	gi|529077670|ref|YP_008376673.1|	-	0.016	15.2	0.0	0.045	13.7	0.0	1.7	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_IclR	PF09339.10	gi|529077670|ref|YP_008376673.1|	-	0.11	12.3	0.0	0.24	11.2	0.0	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
YolD	PF08863.10	gi|529077670|ref|YP_008376673.1|	-	0.15	12.1	0.3	1.3	9.1	0.0	2.5	3	0	0	3	3	3	0	YolD-like	protein
Usp	PF00582.26	gi|529077671|ref|YP_008376674.1|	-	8.6e-29	100.9	0.2	1.1e-28	100.5	0.2	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
2-Hacid_dh_C	PF02826.19	gi|529077673|ref|YP_008376676.1|	-	1.2e-48	164.9	0.0	2e-48	164.1	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|529077673|ref|YP_008376676.1|	-	1.3e-32	112.3	0.2	3.6e-32	110.8	0.2	1.8	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
ACT	PF01842.25	gi|529077673|ref|YP_008376676.1|	-	2.4e-09	36.8	0.0	1e-08	34.8	0.0	2.2	1	0	0	1	1	1	1	ACT	domain
Peptidase_M48	PF01435.18	gi|529077674|ref|YP_008376677.1|	-	5.2e-37	127.5	0.0	1e-36	126.6	0.0	1.5	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M48_N	PF16491.5	gi|529077674|ref|YP_008376677.1|	-	1.7e-30	106.3	2.9	1.7e-30	106.3	2.9	2.0	2	1	0	2	2	2	1	CAAX	prenyl	protease	N-terminal,	five	membrane	helices
DUF2268	PF10026.9	gi|529077674|ref|YP_008376677.1|	-	0.0066	16.0	0.0	0.066	12.8	0.0	2.0	2	0	0	2	2	2	1	Predicted	Zn-dependent	protease	(DUF2268)
Peptidase_M56	PF05569.11	gi|529077674|ref|YP_008376677.1|	-	0.1	11.8	0.9	0.49	9.5	0.0	2.3	2	0	0	2	2	2	0	BlaR1	peptidase	M56
CrgA	PF06781.12	gi|529077674|ref|YP_008376677.1|	-	2.6	8.1	5.4	13	6.0	5.4	2.1	1	0	0	1	1	1	0	Cell	division	protein	CrgA
DnaJ	PF00226.31	gi|529077675|ref|YP_008376678.1|	-	1.9e-11	43.9	0.0	3e-11	43.3	0.0	1.3	1	0	0	1	1	1	1	DnaJ	domain
Mntp	PF02659.15	gi|529077675|ref|YP_008376678.1|	-	0.0047	16.7	0.9	0.0062	16.3	0.9	1.1	1	0	0	1	1	1	1	Putative	manganese	efflux	pump
DUF4824	PF16106.5	gi|529077675|ref|YP_008376678.1|	-	0.094	12.0	7.1	0.15	11.3	7.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4824)
NAD_synthase	PF02540.17	gi|529077676|ref|YP_008376679.1|	-	2.4e-80	269.2	0.0	3e-80	268.8	0.0	1.0	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|529077676|ref|YP_008376679.1|	-	4.9e-07	28.9	0.0	6.8e-05	21.8	0.0	2.1	2	0	0	2	2	2	2	tRNA	methyl	transferase
Asn_synthase	PF00733.21	gi|529077676|ref|YP_008376679.1|	-	0.00021	21.0	0.1	0.00035	20.4	0.1	1.4	1	0	0	1	1	1	1	Asparagine	synthase
HTH_28	PF13518.6	gi|529077676|ref|YP_008376679.1|	-	0.00068	19.7	0.0	0.0053	16.9	0.0	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
QueC	PF06508.13	gi|529077676|ref|YP_008376679.1|	-	0.0077	15.7	0.0	0.033	13.7	0.0	1.9	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
HTH_23	PF13384.6	gi|529077676|ref|YP_008376679.1|	-	0.019	14.7	0.5	0.36	10.7	0.1	2.8	3	0	0	3	3	3	0	Homeodomain-like	domain
HTH_29	PF13551.6	gi|529077676|ref|YP_008376679.1|	-	0.16	12.0	0.2	0.54	10.3	0.0	2.1	2	1	0	2	2	2	0	Winged	helix-turn	helix
Cyclase	PF04199.13	gi|529077678|ref|YP_008376681.1|	-	5.6e-18	65.5	0.3	8.2e-18	65.0	0.3	1.3	1	0	0	1	1	1	1	Putative	cyclase
DUF998	PF06197.13	gi|529077679|ref|YP_008376682.1|	-	1.8e-15	57.0	33.0	2.3e-15	56.7	33.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF998)
HTH_AsnC-type	PF13404.6	gi|529077680|ref|YP_008376683.1|	-	1.5e-11	43.9	1.8	2.9e-11	43.0	1.8	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
AsnC_trans_reg	PF01037.21	gi|529077680|ref|YP_008376683.1|	-	1.3e-09	37.9	0.1	2.4e-09	37.0	0.1	1.5	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|529077680|ref|YP_008376683.1|	-	1.2e-08	34.3	0.1	2e-08	33.7	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_Tnp_ISL3	PF13542.6	gi|529077680|ref|YP_008376683.1|	-	4.6e-07	29.2	0.5	0.0035	16.7	0.0	2.4	2	0	0	2	2	2	2	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_DeoR	PF08220.12	gi|529077680|ref|YP_008376683.1|	-	0.00019	21.1	0.1	0.00051	19.7	0.0	1.7	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|529077680|ref|YP_008376683.1|	-	0.0027	17.6	0.0	0.005	16.8	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_20	PF12840.7	gi|529077680|ref|YP_008376683.1|	-	0.0032	17.5	0.6	0.0061	16.6	0.1	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|529077680|ref|YP_008376683.1|	-	0.0091	15.9	0.0	0.016	15.1	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
DDRGK	PF09756.9	gi|529077680|ref|YP_008376683.1|	-	0.014	15.0	0.0	0.019	14.6	0.0	1.2	1	0	0	1	1	1	0	DDRGK	domain
HTH_11	PF08279.12	gi|529077680|ref|YP_008376683.1|	-	0.017	15.0	0.0	0.032	14.2	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
HTH_36	PF13730.6	gi|529077680|ref|YP_008376683.1|	-	0.026	14.5	0.0	0.044	13.7	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
GP70	PF17429.2	gi|529077680|ref|YP_008376683.1|	-	0.032	14.1	0.3	0.061	13.2	0.3	1.4	1	0	0	1	1	1	0	Gene	product	70
MarR_2	PF12802.7	gi|529077680|ref|YP_008376683.1|	-	0.056	13.3	0.1	0.095	12.6	0.1	1.5	1	0	0	1	1	1	0	MarR	family
HTH_47	PF16221.5	gi|529077680|ref|YP_008376683.1|	-	0.11	12.1	0.2	0.21	11.1	0.2	1.5	1	0	0	1	1	1	0	winged	helix-turn-helix
Phage_Gp19	PF09355.10	gi|529077680|ref|YP_008376683.1|	-	0.12	12.8	1.1	7.4	7.0	0.1	2.3	2	0	0	2	2	2	0	Phage	protein	Gp19/Gp15/Gp42
RuvB_C	PF05491.13	gi|529077680|ref|YP_008376683.1|	-	0.16	11.8	0.0	0.29	11.1	0.0	1.3	1	0	0	1	1	1	0	RuvB	C-terminal	winged	helix	domain
P-II	PF00543.22	gi|529077681|ref|YP_008376684.1|	-	1.4e-33	115.6	0.2	1.6e-33	115.4	0.2	1.0	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
FAD_binding_4	PF01565.23	gi|529077681|ref|YP_008376684.1|	-	0.014	15.1	0.1	0.02	14.7	0.1	1.3	1	0	0	1	1	1	0	FAD	binding	domain
HisG_C	PF08029.11	gi|529077681|ref|YP_008376684.1|	-	0.03	14.4	0.1	6.7	6.9	0.0	2.1	2	0	0	2	2	2	0	HisG,	C-terminal	domain
ALAD	PF00490.21	gi|529077682|ref|YP_008376685.1|	-	6.5e-142	472.4	0.0	7.4e-142	472.2	0.0	1.0	1	0	0	1	1	1	1	Delta-aminolevulinic	acid	dehydratase
PEP_mutase	PF13714.6	gi|529077682|ref|YP_008376685.1|	-	0.17	11.3	3.9	2.7	7.4	0.1	3.4	3	1	0	3	3	3	0	Phosphoenolpyruvate	phosphomutase
Glyco_hydro_36	PF17167.4	gi|529077683|ref|YP_008376686.1|	-	1.1e-151	505.3	0.0	1.4e-151	505.0	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	36	superfamily,	catalytic	domain
Glyco_transf_36	PF06165.11	gi|529077683|ref|YP_008376686.1|	-	1.8e-84	283.1	0.0	3.5e-84	282.2	0.0	1.5	1	0	0	1	1	1	1	Glycosyltransferase	family	36
Glyco_hydr_116N	PF12215.8	gi|529077683|ref|YP_008376686.1|	-	0.038	13.5	0.0	0.072	12.6	0.0	1.3	1	0	0	1	1	1	0	beta-glucosidase	2,	glycosyl-hydrolase	family	116	N-term
Glyco_hydro_65C	PF03633.15	gi|529077683|ref|YP_008376686.1|	-	0.086	12.8	0.0	0.38	10.7	0.0	2.1	2	0	0	2	2	2	0	Glycosyl	hydrolase	family	65,	C-terminal	domain
Glyco_hydro_36	PF17167.4	gi|529077684|ref|YP_008376687.1|	-	2.6e-132	441.5	0.1	3.2e-132	441.2	0.1	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	36	superfamily,	catalytic	domain
Glyco_transf_36	PF06165.11	gi|529077684|ref|YP_008376687.1|	-	2.2e-80	269.7	0.0	3.6e-80	269.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	family	36
Glyco_hydro_65C	PF03633.15	gi|529077684|ref|YP_008376687.1|	-	0.15	12.0	0.0	0.4	10.6	0.0	1.7	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	65,	C-terminal	domain
ATP-synt_DE	PF00401.20	gi|529077684|ref|YP_008376687.1|	-	1.7	9.0	3.9	0.9	9.9	0.1	2.4	2	0	0	2	2	2	0	ATP	synthase,	Delta/Epsilon	chain,	long	alpha-helix	domain
PIN	PF01850.21	gi|529077685|ref|YP_008376688.1|	-	1.4e-06	28.8	0.0	2e-06	28.3	0.0	1.2	1	0	0	1	1	1	1	PIN	domain
VAPB_antitox	PF02697.14	gi|529077686|ref|YP_008376689.1|	-	2.2e-12	47.6	3.4	2.4e-12	47.4	3.4	1.1	1	0	0	1	1	1	1	Putative	antitoxin
DUF4349	PF14257.6	gi|529077686|ref|YP_008376689.1|	-	0.028	13.9	1.8	0.031	13.7	1.8	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4349)
RHH_1	PF01402.21	gi|529077686|ref|YP_008376689.1|	-	0.053	13.5	4.5	0.3	11.1	0.6	2.6	1	1	1	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
DUF4149	PF13664.6	gi|529077687|ref|YP_008376690.1|	-	0.0059	16.9	4.9	0.021	15.1	0.3	2.8	2	1	1	3	3	3	1	Domain	of	unknown	function	(DUF4149)
DUF973	PF06157.11	gi|529077687|ref|YP_008376690.1|	-	0.025	13.6	0.9	0.036	13.1	0.1	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF973)
Glyco_hydro_3	PF00933.21	gi|529077688|ref|YP_008376691.1|	-	1.7e-78	264.2	0.0	2.3e-78	263.8	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.22	gi|529077688|ref|YP_008376691.1|	-	1.3e-43	149.4	0.0	1.9e-43	148.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.6	gi|529077688|ref|YP_008376691.1|	-	8.1e-14	51.5	0.2	1.7e-13	50.5	0.2	1.5	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
DUF2937	PF11157.8	gi|529077689|ref|YP_008376692.1|	-	0.048	13.4	0.2	0.057	13.1	0.2	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2937)
Aldedh	PF00171.22	gi|529077690|ref|YP_008376693.1|	-	2e-23	82.6	9.0	6.6e-19	67.8	5.9	2.6	2	1	0	2	2	2	2	Aldehyde	dehydrogenase	family
LTXXQ	PF07813.12	gi|529077690|ref|YP_008376693.1|	-	0.22	12.2	0.8	0.98	10.2	1.2	1.9	2	0	0	2	2	2	0	LTXXQ	motif	family	protein
DUF2007	PF09413.10	gi|529077690|ref|YP_008376693.1|	-	6.1	7.1	8.0	6.2	7.1	1.7	3.3	3	0	0	3	3	3	0	Putative	prokaryotic	signal	transducing	protein
AA_kinase	PF00696.28	gi|529077691|ref|YP_008376694.1|	-	2e-39	135.6	2.8	2.4e-39	135.4	2.8	1.1	1	0	0	1	1	1	1	Amino	acid	kinase	family
Snf7	PF03357.21	gi|529077691|ref|YP_008376694.1|	-	0.078	12.6	0.0	0.13	11.9	0.0	1.3	1	0	0	1	1	1	0	Snf7
P5CR_dimer	PF14748.6	gi|529077693|ref|YP_008376696.1|	-	2.4e-30	104.8	2.4	2.4e-30	104.8	2.4	1.9	2	0	0	2	2	2	1	Pyrroline-5-carboxylate	reductase	dimerisation
F420_oxidored	PF03807.17	gi|529077693|ref|YP_008376696.1|	-	6.4e-15	55.5	0.3	1.8e-14	54.1	0.3	1.8	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.15	gi|529077693|ref|YP_008376696.1|	-	1.8e-06	28.2	2.3	1.9e-06	28.1	0.4	2.0	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
3HCDH_N	PF02737.18	gi|529077693|ref|YP_008376696.1|	-	8.5e-05	22.5	0.4	0.00026	20.9	0.2	1.9	1	1	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|529077693|ref|YP_008376696.1|	-	0.00021	20.9	0.2	0.00047	19.8	0.1	1.7	1	1	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|529077693|ref|YP_008376696.1|	-	0.00045	20.2	0.4	0.87	9.5	0.1	2.4	1	1	1	2	2	2	2	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
TrkA_N	PF02254.18	gi|529077693|ref|YP_008376696.1|	-	0.00097	19.4	0.6	0.0024	18.1	0.1	2.0	2	0	0	2	2	2	1	TrkA-N	domain
PDH	PF02153.17	gi|529077693|ref|YP_008376696.1|	-	0.0022	17.0	0.3	0.0072	15.4	0.2	1.8	2	0	0	2	2	2	1	Prephenate	dehydrogenase
Rossmann-like	PF10727.9	gi|529077693|ref|YP_008376696.1|	-	0.0036	17.2	4.2	0.0036	17.2	4.2	2.0	2	2	0	2	2	2	1	Rossmann-like	domain
XdhC_C	PF13478.6	gi|529077693|ref|YP_008376696.1|	-	0.011	16.3	0.2	0.028	14.9	0.2	1.9	1	1	0	1	1	1	0	XdhC	Rossmann	domain
Sacchrp_dh_NADP	PF03435.18	gi|529077693|ref|YP_008376696.1|	-	0.056	13.7	0.3	0.16	12.2	0.3	1.8	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
ApbA	PF02558.16	gi|529077693|ref|YP_008376696.1|	-	0.097	12.3	0.1	0.2	11.3	0.1	1.5	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Tnp_DNA_bind	PF14706.6	gi|529077694|ref|YP_008376697.1|	-	1.7e-25	88.6	0.0	3.2e-25	87.7	0.0	1.5	1	0	0	1	1	1	1	Transposase	DNA-binding
Dimer_Tnp_Tn5	PF02281.16	gi|529077694|ref|YP_008376697.1|	-	1.1e-07	31.5	0.1	2.7e-07	30.2	0.1	1.8	1	1	0	1	1	1	1	Transposase	Tn5	dimerisation	domain
DDE_Tnp_1	PF01609.21	gi|529077694|ref|YP_008376697.1|	-	1.2e-07	31.6	0.1	2.3e-07	30.7	0.1	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
OrfB_Zn_ribbon	PF07282.11	gi|529077695|ref|YP_008376698.1|	-	4.1e-23	81.1	0.7	7.1e-23	80.3	0.7	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|529077695|ref|YP_008376698.1|	-	8.3e-09	35.7	0.1	1.6e-08	34.8	0.1	1.5	1	0	0	1	1	1	1	Probable	transposase
TF_Zn_Ribbon	PF08271.12	gi|529077695|ref|YP_008376698.1|	-	0.0094	15.4	0.5	0.02	14.4	0.5	1.6	1	0	0	1	1	1	1	TFIIB	zinc-binding
Zn_Tnp_IS1595	PF12760.7	gi|529077695|ref|YP_008376698.1|	-	0.051	13.6	1.5	0.095	12.7	1.5	1.4	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Ribosomal_L37ae	PF01780.19	gi|529077695|ref|YP_008376698.1|	-	0.072	13.2	0.5	0.15	12.1	0.5	1.5	1	0	0	1	1	1	0	Ribosomal	L37ae	protein	family
DZR	PF12773.7	gi|529077695|ref|YP_008376698.1|	-	0.084	12.9	0.6	0.15	12.1	0.6	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|529077695|ref|YP_008376698.1|	-	0.2	11.4	2.4	6.5	6.6	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF4503	PF14951.6	gi|529077695|ref|YP_008376698.1|	-	0.35	9.3	0.8	0.57	8.6	0.8	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4503)
Lar_restr_allev	PF14354.6	gi|529077695|ref|YP_008376698.1|	-	0.77	10.2	3.9	0.39	11.1	1.1	1.9	2	0	0	2	2	2	0	Restriction	alleviation	protein	Lar
Rubredoxin_2	PF18073.1	gi|529077695|ref|YP_008376698.1|	-	2.5	7.9	7.7	8.6	6.2	0.6	2.4	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
Ni_hydr_CYTB	PF01292.20	gi|529077697|ref|YP_008376700.1|	-	0.0091	15.6	4.7	0.053	13.1	0.4	2.1	1	1	1	2	2	2	2	Prokaryotic	cytochrome	b561
Ferric_reduct	PF01794.19	gi|529077697|ref|YP_008376700.1|	-	0.075	13.2	4.2	1.3	9.2	0.3	2.2	2	1	0	2	2	2	0	Ferric	reductase	like	transmembrane	component
DUF4405	PF14358.6	gi|529077697|ref|YP_008376700.1|	-	0.22	12.1	10.4	3.7	8.2	4.1	2.6	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4405)
TetR_C_6	PF13977.6	gi|529077698|ref|YP_008376701.1|	-	6.9e-13	48.8	1.4	1.1e-12	48.1	1.4	1.4	1	0	0	1	1	1	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|529077698|ref|YP_008376701.1|	-	4.3e-10	39.2	0.0	9.1e-10	38.2	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_31	PF17940.1	gi|529077698|ref|YP_008376701.1|	-	5.1e-09	36.3	5.5	1.8e-08	34.6	3.1	2.3	1	1	1	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_27	PF17935.1	gi|529077698|ref|YP_008376701.1|	-	1.4e-06	28.3	0.2	4.6e-06	26.6	0.1	1.9	1	1	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_29	PF17938.1	gi|529077698|ref|YP_008376701.1|	-	2.4e-05	24.4	0.2	8.4e-05	22.6	0.2	1.8	1	1	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_24	PF17932.1	gi|529077698|ref|YP_008376701.1|	-	3.2e-05	24.2	1.0	0.00019	21.7	0.1	2.4	1	1	1	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_17	PF17922.1	gi|529077698|ref|YP_008376701.1|	-	0.00071	19.6	0.1	0.0016	18.5	0.0	1.6	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_5	PF08360.11	gi|529077698|ref|YP_008376701.1|	-	0.012	15.8	0.0	0.02	15.1	0.0	1.3	1	0	0	1	1	1	0	QacR-like	protein,	C-terminal	region
TetR_C_25	PF17933.1	gi|529077698|ref|YP_008376701.1|	-	0.053	13.8	0.7	0.24	11.8	0.2	2.1	2	0	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
ABC_membrane	PF00664.23	gi|529077699|ref|YP_008376702.1|	-	2.9e-44	151.8	0.1	3.8e-44	151.4	0.1	1.2	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
ABC_tran	PF00005.27	gi|529077699|ref|YP_008376702.1|	-	1.6e-36	125.9	0.0	2.7e-36	125.1	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_22	PF13401.6	gi|529077699|ref|YP_008376702.1|	-	0.00051	20.3	0.2	0.0041	17.4	0.2	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|529077699|ref|YP_008376702.1|	-	0.00099	18.9	0.3	0.003	17.3	0.1	1.9	1	1	1	2	2	2	1	AAA	domain
AAA_21	PF13304.6	gi|529077699|ref|YP_008376702.1|	-	0.0022	17.9	0.0	0.0066	16.3	0.0	1.8	2	0	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|529077699|ref|YP_008376702.1|	-	0.0057	16.1	0.0	0.1	12.0	0.0	1.9	1	1	1	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
Zeta_toxin	PF06414.12	gi|529077699|ref|YP_008376702.1|	-	0.0059	15.9	0.0	0.011	15.0	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
AAA	PF00004.29	gi|529077699|ref|YP_008376702.1|	-	0.0073	16.7	0.0	0.061	13.7	0.0	2.4	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.6	gi|529077699|ref|YP_008376702.1|	-	0.018	15.2	0.1	0.29	11.3	0.0	2.5	3	0	0	3	3	3	0	AAA	domain
AAA_23	PF13476.6	gi|529077699|ref|YP_008376702.1|	-	0.038	14.5	0.0	0.082	13.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|529077699|ref|YP_008376702.1|	-	0.041	14.4	0.0	0.13	12.8	0.0	1.9	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|529077699|ref|YP_008376702.1|	-	0.046	14.1	0.3	0.11	12.9	0.3	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
cobW	PF02492.19	gi|529077699|ref|YP_008376702.1|	-	0.073	12.7	0.0	0.13	11.8	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
RsgA_GTPase	PF03193.16	gi|529077699|ref|YP_008376702.1|	-	0.079	12.9	0.0	0.15	11.9	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
TsaE	PF02367.17	gi|529077699|ref|YP_008376702.1|	-	0.082	12.9	0.0	0.19	11.8	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
DEAD	PF00270.29	gi|529077699|ref|YP_008376702.1|	-	0.094	12.5	0.4	0.74	9.6	0.4	2.0	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
AAA_29	PF13555.6	gi|529077699|ref|YP_008376702.1|	-	0.1	12.4	0.0	0.28	10.9	0.0	1.7	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_14	PF13173.6	gi|529077699|ref|YP_008376702.1|	-	0.12	12.4	0.0	0.37	10.8	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.23	gi|529077699|ref|YP_008376702.1|	-	0.17	12.0	0.0	0.52	10.4	0.0	1.9	2	0	0	2	2	1	0	50S	ribosome-binding	GTPase
AAA_24	PF13479.6	gi|529077699|ref|YP_008376702.1|	-	0.2	11.3	0.0	0.39	10.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.22	gi|529077699|ref|YP_008376702.1|	-	0.2	10.8	0.0	0.34	10.0	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
ABC_ATPase	PF09818.9	gi|529077699|ref|YP_008376702.1|	-	0.43	9.3	1.6	0.58	8.9	0.2	1.7	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
Exo_endo_phos	PF03372.23	gi|529077702|ref|YP_008376705.1|	-	2.2e-13	50.3	2.9	4.5e-13	49.3	2.9	1.5	1	1	0	1	1	1	1	Endonuclease/Exonuclease/phosphatase	family
Exo_endo_phos_2	PF14529.6	gi|529077702|ref|YP_008376705.1|	-	0.027	14.3	0.1	9	6.2	0.1	2.2	2	0	0	2	2	2	0	Endonuclease-reverse	transcriptase
Lactamase_B_2	PF12706.7	gi|529077703|ref|YP_008376706.1|	-	1.6e-09	37.6	2.6	5.4e-09	35.9	2.6	2.0	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|529077703|ref|YP_008376706.1|	-	5.4e-07	29.8	10.9	1.1e-06	28.9	9.8	2.1	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_6	PF16661.5	gi|529077703|ref|YP_008376706.1|	-	0.0073	15.8	0.1	2.5	7.5	0.0	2.5	2	0	0	2	2	2	2	Metallo-beta-lactamase	superfamily	domain
DUF87	PF01935.17	gi|529077704|ref|YP_008376707.1|	-	6.6e-08	32.9	0.0	1.2e-07	32.0	0.0	1.4	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|529077704|ref|YP_008376707.1|	-	5.3e-06	25.3	0.1	0.0056	15.3	0.0	2.2	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
AAA_16	PF13191.6	gi|529077704|ref|YP_008376707.1|	-	0.00082	19.8	0.0	0.0042	17.5	0.0	2.1	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|529077704|ref|YP_008376707.1|	-	0.0049	17.1	0.0	0.021	15.1	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
Zeta_toxin	PF06414.12	gi|529077704|ref|YP_008376707.1|	-	0.017	14.4	0.0	0.13	11.5	0.0	2.1	2	0	0	2	2	2	0	Zeta	toxin
TrwB_AAD_bind	PF10412.9	gi|529077704|ref|YP_008376707.1|	-	0.022	13.7	0.0	0.035	13.0	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA	PF00004.29	gi|529077704|ref|YP_008376707.1|	-	0.026	15.0	0.2	5.6	7.4	0.0	2.3	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
T2SSE	PF00437.20	gi|529077704|ref|YP_008376707.1|	-	0.026	13.6	0.0	0.046	12.8	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_10	PF12846.7	gi|529077704|ref|YP_008376707.1|	-	0.046	12.6	0.0	1.5	7.7	0.0	2.2	2	0	0	2	2	2	0	AAA-like	domain
ResIII	PF04851.15	gi|529077704|ref|YP_008376707.1|	-	0.056	13.4	0.0	7.1	6.6	0.0	2.3	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
HAS-barrel	PF09378.10	gi|529077704|ref|YP_008376707.1|	-	0.084	13.0	0.0	0.25	11.5	0.0	1.8	1	0	0	1	1	1	0	HAS	barrel	domain
FtsK_SpoIIIE	PF01580.18	gi|529077704|ref|YP_008376707.1|	-	0.091	12.1	0.0	0.32	10.3	0.0	1.9	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
DEAD	PF00270.29	gi|529077704|ref|YP_008376707.1|	-	0.094	12.5	0.1	2.6	7.8	0.0	2.2	1	1	1	2	2	2	0	DEAD/DEAH	box	helicase
SMBP	PF16785.5	gi|529077705|ref|YP_008376708.1|	-	0.072	13.3	0.2	0.14	12.3	0.2	1.5	1	0	0	1	1	1	0	Small	metal-binding	protein
Cadherin-like	PF12733.7	gi|529077705|ref|YP_008376708.1|	-	0.65	10.6	6.1	0.32	11.6	2.9	2.1	2	1	0	2	2	2	0	Cadherin-like	beta	sandwich	domain
DUF615	PF04751.14	gi|529077705|ref|YP_008376708.1|	-	1.6	8.7	7.5	1.1	9.2	4.4	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF615)
DDE_Tnp_1	PF01609.21	gi|529077706|ref|YP_008376709.1|	-	8.8e-18	64.7	0.1	1.2e-17	64.3	0.1	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|529077706|ref|YP_008376709.1|	-	0.006	16.6	0.0	0.011	15.8	0.0	1.4	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
FG-GAP_2	PF14312.6	gi|529077707|ref|YP_008376710.1|	-	3.3e-63	209.7	21.6	7.7e-14	51.7	2.2	7.3	7	0	0	7	7	7	6	FG-GAP	repeat
AnfO_nitrog	PF09582.10	gi|529077707|ref|YP_008376710.1|	-	0.00039	19.8	0.0	16	4.8	0.0	5.2	6	0	0	6	6	6	1	Iron	only	nitrogenase	protein	AnfO	(AnfO_nitrog)
ydhR	PF08803.11	gi|529077707|ref|YP_008376710.1|	-	0.019	14.9	0.3	19	5.2	0.0	3.5	3	0	0	3	3	3	0	Putative	mono-oxygenase	ydhR
YCII	PF03795.14	gi|529077707|ref|YP_008376710.1|	-	0.02	15.3	0.6	9.7	6.7	0.0	3.9	3	1	0	3	3	3	0	YCII-related	domain
PilJ_C	PF18223.1	gi|529077707|ref|YP_008376710.1|	-	0.068	13.7	0.1	7.5	7.1	0.0	2.6	2	0	0	2	2	2	0	Pili	PilJ	C-terminal	domain
FG-GAP	PF01839.23	gi|529077707|ref|YP_008376710.1|	-	0.17	12.1	20.1	1.1	9.4	0.1	5.6	6	1	0	6	6	6	0	FG-GAP	repeat
RTP801_C	PF07809.11	gi|529077707|ref|YP_008376710.1|	-	0.22	11.4	0.0	54	3.7	0.0	3.1	2	1	1	3	3	3	0	RTP801	C-terminal	region
Usp	PF00582.26	gi|529077708|ref|YP_008376711.1|	-	3.4e-35	121.6	0.1	3.9e-35	121.4	0.1	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
PGM_PMM_I	PF02878.16	gi|529077709|ref|YP_008376712.1|	-	1.2e-30	106.1	0.0	3e-30	104.7	0.0	1.7	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.16	gi|529077709|ref|YP_008376712.1|	-	9.2e-24	84.0	1.0	4.7e-23	81.8	0.2	2.6	3	0	0	3	3	3	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_IV	PF00408.20	gi|529077709|ref|YP_008376712.1|	-	1.8e-12	47.3	0.3	6e-12	45.6	0.1	2.0	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
PGM_PMM_III	PF02880.16	gi|529077709|ref|YP_008376712.1|	-	2.7e-05	24.4	0.0	6.5e-05	23.1	0.0	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PNP_UDP_1	PF01048.20	gi|529077710|ref|YP_008376713.1|	-	3.7e-43	147.4	0.5	4.6e-43	147.2	0.5	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
Bmp	PF02608.14	gi|529077712|ref|YP_008376715.1|	-	3.2e-56	190.5	6.5	8.2e-56	189.2	6.5	1.6	1	1	0	1	1	1	1	ABC	transporter	substrate-binding	protein	PnrA-like
Peripla_BP_4	PF13407.6	gi|529077712|ref|YP_008376715.1|	-	0.00014	21.5	4.7	0.00022	20.9	4.7	1.3	1	0	0	1	1	1	1	Periplasmic	binding	protein	domain
TAT_signal	PF10518.9	gi|529077712|ref|YP_008376715.1|	-	0.0084	15.9	0.0	0.0084	15.9	0.0	1.9	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ABC_tran	PF00005.27	gi|529077713|ref|YP_008376716.1|	-	2e-47	161.2	0.0	6.3e-30	104.5	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.6	gi|529077713|ref|YP_008376716.1|	-	2.6e-09	37.3	0.3	0.00023	21.1	0.0	2.4	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|529077713|ref|YP_008376716.1|	-	1e-06	28.3	0.0	0.0028	17.4	0.0	2.9	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|529077713|ref|YP_008376716.1|	-	0.00036	20.5	0.2	0.0042	17.0	0.1	2.4	3	0	0	3	3	3	1	RsgA	GTPase
AAA_30	PF13604.6	gi|529077713|ref|YP_008376716.1|	-	0.00084	19.1	0.1	0.0062	16.3	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|529077713|ref|YP_008376716.1|	-	0.0014	18.4	0.0	0.046	13.4	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_14	PF13173.6	gi|529077713|ref|YP_008376716.1|	-	0.0031	17.6	0.3	0.39	10.7	0.0	2.8	3	0	0	3	3	3	1	AAA	domain
Bac_DnaA	PF00308.18	gi|529077713|ref|YP_008376716.1|	-	0.0037	17.1	2.3	0.0075	16.1	0.1	2.3	3	0	0	3	3	3	1	Bacterial	dnaA	protein
SMC_N	PF02463.19	gi|529077713|ref|YP_008376716.1|	-	0.0045	16.5	0.6	0.27	10.6	0.2	3.1	2	1	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_27	PF13514.6	gi|529077713|ref|YP_008376716.1|	-	0.0089	15.6	0.0	0.016	14.8	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_23	PF13476.6	gi|529077713|ref|YP_008376716.1|	-	0.012	16.2	0.0	0.019	15.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|529077713|ref|YP_008376716.1|	-	0.021	14.9	0.0	0.069	13.2	0.0	2.0	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
BPD_transp_2	PF02653.16	gi|529077714|ref|YP_008376717.1|	-	2e-39	135.4	34.3	2e-39	135.4	34.3	1.8	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
DUF1269	PF06897.12	gi|529077714|ref|YP_008376717.1|	-	0.011	15.9	0.4	0.011	15.9	0.4	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1269)
Romo1	PF10247.9	gi|529077714|ref|YP_008376717.1|	-	4.6	7.7	9.5	0.26	11.7	0.9	2.9	3	0	0	3	3	3	0	Reactive	mitochondrial	oxygen	species	modulator	1
BPD_transp_2	PF02653.16	gi|529077715|ref|YP_008376718.1|	-	1.1e-29	103.5	36.4	1.1e-29	103.5	36.4	1.8	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
dCMP_cyt_deam_1	PF00383.23	gi|529077716|ref|YP_008376719.1|	-	8.1e-15	54.5	0.0	9.4e-15	54.3	0.0	1.1	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
dCMP_cyt_deam_2	PF08211.12	gi|529077716|ref|YP_008376719.1|	-	2.5e-11	43.9	0.6	4.8e-11	43.0	0.2	1.5	2	0	0	2	2	2	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
MafB19-deam	PF14437.6	gi|529077716|ref|YP_008376719.1|	-	0.049	13.4	0.1	0.12	12.1	0.0	1.7	1	1	1	2	2	2	0	MafB19-like	deaminase
MCPsignal	PF00015.21	gi|529077717|ref|YP_008376720.1|	-	9.2e-45	152.5	49.1	3.4e-41	140.9	28.2	3.0	2	2	1	3	3	3	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
BLOC1_2	PF10046.9	gi|529077717|ref|YP_008376720.1|	-	1.4e-06	28.5	23.4	0.00017	21.8	1.7	4.7	3	1	1	4	4	4	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF948	PF06103.11	gi|529077717|ref|YP_008376720.1|	-	7.8e-05	22.9	31.2	0.0056	16.9	3.4	4.9	2	1	1	3	3	3	1	Bacterial	protein	of	unknown	function	(DUF948)
DUF1664	PF07889.12	gi|529077717|ref|YP_008376720.1|	-	0.00014	21.9	24.8	0.021	14.9	2.2	4.4	1	1	3	4	4	4	2	Protein	of	unknown	function	(DUF1664)
Laminin_II	PF06009.12	gi|529077717|ref|YP_008376720.1|	-	0.001	19.1	34.1	0.15	12.0	4.5	4.4	2	2	2	4	4	4	3	Laminin	Domain	II
Snapin_Pallidin	PF14712.6	gi|529077717|ref|YP_008376720.1|	-	0.0012	19.2	9.5	0.063	13.7	0.1	3.8	3	1	0	3	3	3	2	Snapin/Pallidin
DUF3450	PF11932.8	gi|529077717|ref|YP_008376720.1|	-	0.0039	16.5	34.1	0.0072	15.6	7.2	4.0	1	1	3	4	4	4	2	Protein	of	unknown	function	(DUF3450)
Ferritin	PF00210.24	gi|529077717|ref|YP_008376720.1|	-	0.0056	16.6	6.5	0.0056	16.6	6.5	4.2	2	2	1	4	4	4	1	Ferritin-like	domain
Glyco_hydro_65N	PF03636.15	gi|529077717|ref|YP_008376720.1|	-	0.012	15.3	1.5	0.019	14.6	0.0	2.0	1	1	0	2	2	2	0	Glycosyl	hydrolase	family	65,	N-terminal	domain
Sec34	PF04136.15	gi|529077717|ref|YP_008376720.1|	-	0.013	15.4	20.2	0.85	9.5	2.2	4.7	3	2	2	5	5	4	0	Sec34-like	family
TMPIT	PF07851.13	gi|529077717|ref|YP_008376720.1|	-	0.015	14.6	1.4	0.015	14.6	1.4	3.2	1	1	0	2	2	2	0	TMPIT-like	protein
Spc7	PF08317.11	gi|529077717|ref|YP_008376720.1|	-	0.017	14.0	36.2	0.05	12.5	13.1	3.0	1	1	2	3	3	3	0	Spc7	kinetochore	protein
AIP3	PF03915.13	gi|529077717|ref|YP_008376720.1|	-	0.037	13.1	20.1	0.038	13.1	6.2	2.2	1	1	1	2	2	2	0	Actin	interacting	protein	3
NPV_P10	PF05531.12	gi|529077717|ref|YP_008376720.1|	-	0.038	14.4	26.7	0.19	12.2	1.8	5.5	3	2	2	5	5	5	0	Nucleopolyhedrovirus	P10	protein
DUF2779	PF11074.8	gi|529077717|ref|YP_008376720.1|	-	0.09	13.2	1.9	5.1	7.6	0.0	3.1	3	1	0	3	3	3	0	Domain	of	unknown	function(DUF2779)
Fib_alpha	PF08702.10	gi|529077717|ref|YP_008376720.1|	-	0.21	11.8	17.8	1.1	9.4	1.7	4.3	2	2	2	4	4	4	0	Fibrinogen	alpha/beta	chain	family
SKA1	PF07160.12	gi|529077717|ref|YP_008376720.1|	-	1.1	9.1	16.4	1.3	8.8	0.5	3.7	1	1	1	3	3	3	0	Spindle	and	kinetochore-associated	protein	1
Baculo_PEP_C	PF04513.12	gi|529077717|ref|YP_008376720.1|	-	1.2	9.2	23.5	0.56	10.2	4.3	4.0	1	1	1	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Syntaxin_2	PF14523.6	gi|529077717|ref|YP_008376720.1|	-	1.4	9.3	9.9	2.6	8.4	0.2	4.2	1	1	2	4	4	4	0	Syntaxin-like	protein
T3SSipB	PF16535.5	gi|529077717|ref|YP_008376720.1|	-	2.3	8.7	30.8	1.5	9.3	9.5	2.7	2	1	0	2	2	2	0	Type	III	cell	invasion	protein	SipB
Corona_S2	PF01601.16	gi|529077717|ref|YP_008376720.1|	-	3.5	6.0	6.6	6.8	5.1	0.4	2.6	1	1	1	3	3	3	0	Coronavirus	S2	glycoprotein
AAA_13	PF13166.6	gi|529077717|ref|YP_008376720.1|	-	4.6	5.8	31.9	28	3.2	29.3	2.9	1	1	0	2	2	2	0	AAA	domain
Mod_r	PF07200.13	gi|529077717|ref|YP_008376720.1|	-	4.8	7.3	23.5	1.6	8.8	1.8	4.3	2	2	2	4	4	4	0	Modifier	of	rudimentary	(Mod(r))	protein
Atg14	PF10186.9	gi|529077717|ref|YP_008376720.1|	-	5.4	6.0	14.2	1.5	7.8	4.5	2.7	1	1	0	2	2	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
ERM	PF00769.19	gi|529077717|ref|YP_008376720.1|	-	6.4	6.5	49.2	0.8	9.5	18.6	3.0	2	1	1	3	3	3	0	Ezrin/radixin/moesin	family
APG17	PF04108.12	gi|529077717|ref|YP_008376720.1|	-	6.5	5.7	37.8	4.3	6.3	11.2	3.7	1	1	3	4	4	4	0	Autophagy	protein	Apg17
IFT46_B_C	PF12317.8	gi|529077717|ref|YP_008376720.1|	-	7.5	6.2	8.1	5.3	6.7	0.2	3.1	2	1	1	3	3	3	0	Intraflagellar	transport	complex	B	protein	46	C	terminal
CdvA	PF18822.1	gi|529077717|ref|YP_008376720.1|	-	7.9	6.3	27.3	3.3	7.6	3.0	4.5	2	2	1	4	4	4	0	CdvA-like	coiled-coil	domain
TPR_MLP1_2	PF07926.12	gi|529077717|ref|YP_008376720.1|	-	8.8	6.4	44.2	3.2	7.8	4.6	4.1	1	1	1	3	3	3	0	TPR/MLP1/MLP2-like	protein
FlgN	PF05130.12	gi|529077717|ref|YP_008376720.1|	-	9.4	6.7	36.2	1.3	9.5	10.9	4.0	1	1	3	4	4	4	0	FlgN	protein
DUF1427	PF07235.11	gi|529077718|ref|YP_008376721.1|	-	7.2e-06	25.9	3.3	7.9e-06	25.7	3.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1427)
TauE	PF01925.19	gi|529077718|ref|YP_008376721.1|	-	0.0066	16.1	3.1	0.0072	16.0	3.1	1.0	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
SpoVAB	PF13782.6	gi|529077718|ref|YP_008376721.1|	-	0.078	13.3	0.8	0.083	13.2	0.8	1.1	1	0	0	1	1	1	0	Stage	V	sporulation	protein	AB
PNP_UDP_1	PF01048.20	gi|529077719|ref|YP_008376722.1|	-	9.7e-45	152.6	3.2	1.1e-44	152.4	3.2	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
OrfB_IS605	PF01385.19	gi|529077720|ref|YP_008376723.1|	-	1.9e-33	115.2	0.6	3.9e-33	114.2	0.6	1.5	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|529077720|ref|YP_008376723.1|	-	1.3e-19	69.8	1.5	2.4e-19	69.0	0.5	2.0	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
Prim_Zn_Ribbon	PF08273.12	gi|529077720|ref|YP_008376723.1|	-	3.9	7.8	8.2	0.52	10.6	3.3	2.1	2	0	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
PNP_UDP_1	PF01048.20	gi|529077721|ref|YP_008376724.1|	-	2.3e-41	141.6	0.2	2.7e-41	141.3	0.2	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
IF-2B	PF01008.17	gi|529077722|ref|YP_008376725.1|	-	1.3e-69	234.5	0.5	1.5e-69	234.3	0.5	1.0	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
PEP-utilizers	PF00391.23	gi|529077722|ref|YP_008376725.1|	-	0.0078	15.9	0.4	0.15	11.8	0.4	2.8	2	1	1	3	3	3	1	PEP-utilising	enzyme,	mobile	domain
TIM	PF00121.18	gi|529077722|ref|YP_008376725.1|	-	0.13	11.6	0.1	0.31	10.4	0.0	1.7	2	0	0	2	2	2	0	Triosephosphate	isomerase
DeoC	PF01791.9	gi|529077723|ref|YP_008376726.1|	-	7e-13	48.7	0.7	9.3e-13	48.3	0.7	1.2	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
ATPase	PF06745.13	gi|529077724|ref|YP_008376727.1|	-	9.2e-57	192.0	0.0	1.1e-56	191.7	0.0	1.1	1	0	0	1	1	1	1	KaiC
DnaB_C	PF03796.15	gi|529077724|ref|YP_008376727.1|	-	2.5e-09	36.9	0.0	4e-06	26.4	0.0	2.3	2	0	0	2	2	2	2	DnaB-like	helicase	C	terminal	domain
AAA_25	PF13481.6	gi|529077724|ref|YP_008376727.1|	-	9.7e-08	31.8	0.0	1.6e-07	31.1	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_24	PF13479.6	gi|529077724|ref|YP_008376727.1|	-	5.8e-07	29.4	0.0	1.3e-06	28.3	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
GvpD	PF07088.11	gi|529077724|ref|YP_008376727.1|	-	1.3e-05	24.0	1.4	4.4e-05	22.3	0.1	2.4	2	1	0	2	2	2	1	GvpD	gas	vesicle	protein
MEDS	PF14417.6	gi|529077724|ref|YP_008376727.1|	-	0.00024	21.0	0.0	0.0004	20.2	0.0	1.4	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
AAA_16	PF13191.6	gi|529077724|ref|YP_008376727.1|	-	0.00046	20.6	0.1	0.0088	16.4	0.1	2.5	1	1	0	1	1	1	1	AAA	ATPase	domain
IstB_IS21	PF01695.17	gi|529077724|ref|YP_008376727.1|	-	0.00098	18.9	0.0	0.0016	18.2	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_14	PF13173.6	gi|529077724|ref|YP_008376727.1|	-	0.0023	17.9	0.0	0.0049	16.9	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
Rad51	PF08423.11	gi|529077724|ref|YP_008376727.1|	-	0.0026	17.1	0.0	0.0036	16.6	0.0	1.2	1	0	0	1	1	1	1	Rad51
RecA	PF00154.21	gi|529077724|ref|YP_008376727.1|	-	0.0069	15.9	0.0	0.012	15.1	0.0	1.4	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
AAA_22	PF13401.6	gi|529077724|ref|YP_008376727.1|	-	0.0072	16.6	0.0	0.014	15.7	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
T2SSE	PF00437.20	gi|529077724|ref|YP_008376727.1|	-	0.0095	15.0	0.0	0.014	14.5	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_19	PF13245.6	gi|529077724|ref|YP_008376727.1|	-	0.023	15.0	0.0	0.042	14.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
DUF2075	PF09848.9	gi|529077724|ref|YP_008376727.1|	-	0.026	13.8	0.0	0.037	13.3	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_33	PF13671.6	gi|529077724|ref|YP_008376727.1|	-	0.053	13.7	0.1	0.11	12.7	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
DAP3	PF10236.9	gi|529077724|ref|YP_008376727.1|	-	0.063	12.4	0.0	0.1	11.8	0.0	1.2	1	0	0	1	1	1	0	Mitochondrial	ribosomal	death-associated	protein	3
AAA_30	PF13604.6	gi|529077724|ref|YP_008376727.1|	-	0.1	12.3	0.0	0.18	11.5	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_11	PF13086.6	gi|529077724|ref|YP_008376727.1|	-	0.16	11.8	0.0	0.28	11.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NAD_kinase	PF01513.21	gi|529077725|ref|YP_008376728.1|	-	5.8e-35	120.9	1.0	7e-35	120.6	1.0	1.1	1	0	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.24	gi|529077725|ref|YP_008376728.1|	-	0.025	14.2	0.1	0.047	13.3	0.1	1.5	1	0	0	1	1	1	0	Diacylglycerol	kinase	catalytic	domain
Zn-ribbon_8	PF09723.10	gi|529077728|ref|YP_008376731.1|	-	0.021	14.9	0.8	0.036	14.2	0.8	1.4	1	0	0	1	1	1	0	Zinc	ribbon	domain
HypA	PF01155.19	gi|529077728|ref|YP_008376731.1|	-	0.029	14.4	0.5	0.032	14.3	0.5	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Bac_luciferase	PF00296.20	gi|529077730|ref|YP_008376733.1|	-	3.6e-65	220.5	10.9	4.6e-65	220.1	10.9	1.0	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
F420_ligase	PF01996.16	gi|529077731|ref|YP_008376734.1|	-	4e-54	183.6	0.1	5e-54	183.2	0.1	1.0	1	0	0	1	1	1	1	F420-0:Gamma-glutamyl	ligase
Metallophos_2	PF12850.7	gi|529077732|ref|YP_008376735.1|	-	7.6e-27	94.5	0.2	8.8e-27	94.3	0.2	1.0	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|529077732|ref|YP_008376735.1|	-	0.093	13.2	0.2	0.47	10.9	0.0	1.9	1	1	1	2	2	2	0	Calcineurin-like	phosphoesterase
IF-2B	PF01008.17	gi|529077734|ref|YP_008376737.1|	-	2.5e-38	131.9	0.0	3.1e-38	131.6	0.0	1.1	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
NUDIX	PF00293.28	gi|529077734|ref|YP_008376737.1|	-	1.4e-10	41.3	0.6	2.8e-10	40.3	0.6	1.6	1	0	0	1	1	1	1	NUDIX	domain
Glyco_hydro_43	PF04616.14	gi|529077736|ref|YP_008376739.1|	-	3.4e-88	295.7	0.1	4.1e-88	295.4	0.1	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	43
GH43_C2	PF17851.1	gi|529077736|ref|YP_008376739.1|	-	1.5e-34	119.5	0.0	2.1e-34	119.0	0.0	1.2	1	0	0	1	1	1	1	Beta	xylosidase	C-terminal	Concanavalin	A-like	domain
Rhodanese	PF00581.20	gi|529077737|ref|YP_008376740.1|	-	1e-15	58.2	0.0	1.2e-15	58.0	0.0	1.1	1	0	0	1	1	1	1	Rhodanese-like	domain
NUDIX	PF00293.28	gi|529077738|ref|YP_008376741.1|	-	6.8e-15	55.3	0.5	8.9e-15	54.9	0.5	1.1	1	0	0	1	1	1	1	NUDIX	domain
zf-C2H2_9	PF16293.5	gi|529077741|ref|YP_008376744.1|	-	0.00097	18.9	0.1	0.0018	18.1	0.1	1.3	1	0	0	1	1	1	1	C2H2	type	zinc-finger	(1	copy)
zf-Di19	PF05605.12	gi|529077741|ref|YP_008376744.1|	-	0.29	11.5	2.0	0.74	10.2	0.1	2.1	2	0	0	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
Acetyltransf_1	PF00583.25	gi|529077742|ref|YP_008376745.1|	-	5.1e-16	59.0	0.0	6.1e-16	58.7	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|529077742|ref|YP_008376745.1|	-	1.8e-09	37.9	0.0	2.5e-09	37.4	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|529077742|ref|YP_008376745.1|	-	1.1e-08	35.1	0.0	1.3e-08	34.8	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|529077742|ref|YP_008376745.1|	-	0.00026	20.9	0.0	0.00044	20.2	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.7	gi|529077742|ref|YP_008376745.1|	-	0.0043	17.1	0.0	0.0061	16.6	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Tom6	PF17112.5	gi|529077742|ref|YP_008376745.1|	-	0.059	12.9	0.0	0.11	12.0	0.0	1.4	1	0	0	1	1	1	0	Mitochondrial	import	receptor	subunit	Tom6,	fungal
Ntox28	PF15605.6	gi|529077742|ref|YP_008376745.1|	-	0.066	13.5	0.0	0.11	12.7	0.0	1.3	1	0	0	1	1	1	0	Bacterial	toxin	28
PrsW-protease	PF13367.6	gi|529077744|ref|YP_008376747.1|	-	8.1e-44	149.4	19.4	8.1e-44	149.4	19.4	1.5	2	0	0	2	2	2	1	PrsW	family	intramembrane	metalloprotease
SNO	PF01174.19	gi|529077745|ref|YP_008376748.1|	-	1.1e-50	172.1	0.0	1.4e-50	171.8	0.0	1.0	1	0	0	1	1	1	1	SNO	glutamine	amidotransferase	family
GATase_3	PF07685.14	gi|529077745|ref|YP_008376748.1|	-	1.8e-10	40.7	0.0	2.8e-10	40.1	0.0	1.3	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
Peptidase_S51	PF03575.17	gi|529077745|ref|YP_008376748.1|	-	0.00033	20.4	0.0	0.00042	20.0	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	S51
DJ-1_PfpI	PF01965.24	gi|529077745|ref|YP_008376748.1|	-	0.00062	19.6	0.1	0.00091	19.1	0.1	1.3	1	0	0	1	1	1	1	DJ-1/PfpI	family
GATase	PF00117.28	gi|529077745|ref|YP_008376748.1|	-	0.0043	16.9	0.0	0.045	13.5	0.0	2.0	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
BPL_N	PF09825.9	gi|529077745|ref|YP_008376748.1|	-	0.13	11.3	0.0	0.21	10.6	0.0	1.3	1	0	0	1	1	1	0	Biotin-protein	ligase,	N	terminal
DUF4154	PF13689.6	gi|529077745|ref|YP_008376748.1|	-	0.15	12.3	0.0	0.26	11.5	0.0	1.4	1	0	0	1	1	1	0	YfiR/HmsC-like
Peptidase_C26	PF07722.13	gi|529077745|ref|YP_008376748.1|	-	0.19	11.4	3.4	11	5.7	0.0	3.0	2	1	1	3	3	3	0	Peptidase	C26
Cyt_bd_oxida_I	PF01654.17	gi|529077747|ref|YP_008376750.1|	-	6.4e-142	473.1	22.3	8.1e-142	472.7	22.3	1.0	1	0	0	1	1	1	1	Cytochrome	bd	terminal	oxidase	subunit	I
DUF2627	PF11118.8	gi|529077747|ref|YP_008376750.1|	-	0.005	17.4	0.1	0.005	17.4	0.1	3.5	5	0	0	5	5	5	1	Protein	of	unknown	function	(DUF2627)
Exosortase_EpsH	PF09721.10	gi|529077747|ref|YP_008376750.1|	-	0.0052	16.3	1.3	0.0052	16.3	1.3	3.3	3	1	0	3	3	3	2	Transmembrane	exosortase	(Exosortase_EpsH)
DUF3522	PF12036.8	gi|529077747|ref|YP_008376750.1|	-	0.48	10.7	6.0	6.1	7.1	0.4	3.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3522)
DUF4134	PF13572.6	gi|529077747|ref|YP_008376750.1|	-	3.5	8.0	6.7	0.85	9.9	1.7	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4134)
Cyt_bd_oxida_II	PF02322.15	gi|529077748|ref|YP_008376751.1|	-	5.6e-62	209.8	31.4	6.4e-62	209.6	31.4	1.0	1	0	0	1	1	1	1	Cytochrome	bd	terminal	oxidase	subunit	II
PRA-PH	PF01503.17	gi|529077749|ref|YP_008376752.1|	-	3.7e-18	65.8	2.0	4e-18	65.6	2.0	1.0	1	0	0	1	1	1	1	Phosphoribosyl-ATP	pyrophosphohydrolase
MazG	PF03819.17	gi|529077749|ref|YP_008376752.1|	-	0.0018	18.4	1.2	0.0028	17.8	1.2	1.3	1	0	0	1	1	1	1	MazG	nucleotide	pyrophosphohydrolase	domain
NTP_transf_2	PF01909.23	gi|529077750|ref|YP_008376753.1|	-	1.6e-11	44.4	0.2	1.8e-11	44.2	0.2	1.3	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|529077750|ref|YP_008376753.1|	-	4.9e-08	32.9	0.0	7.1e-08	32.4	0.0	1.4	1	1	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
DNA_pol_B_palm	PF14792.6	gi|529077750|ref|YP_008376753.1|	-	0.023	14.9	0.1	0.026	14.7	0.1	1.2	1	0	0	1	1	1	0	DNA	polymerase	beta	palm
Adenyl_cycl_N	PF12633.7	gi|529077750|ref|YP_008376753.1|	-	0.21	11.5	0.0	0.31	10.9	0.0	1.2	1	0	0	1	1	1	0	Adenylate	cyclase	NT	domain
PMSR	PF01625.21	gi|529077752|ref|YP_008376755.1|	-	1.3e-65	220.3	1.3	1.5e-65	220.0	1.3	1.0	1	0	0	1	1	1	1	Peptide	methionine	sulfoxide	reductase
Pyr_redox_2	PF07992.14	gi|529077753|ref|YP_008376756.1|	-	6.3e-39	134.0	1.5	7.6e-39	133.7	1.5	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|529077753|ref|YP_008376756.1|	-	4e-16	59.2	0.4	3.1e-12	46.4	0.0	2.7	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|529077753|ref|YP_008376756.1|	-	8.3e-13	48.7	1.2	1.4e-11	44.8	0.0	2.5	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|529077753|ref|YP_008376756.1|	-	3.8e-05	22.6	0.2	0.17	10.5	0.0	3.2	4	0	0	4	4	4	2	HI0933-like	protein
FAD_binding_2	PF00890.24	gi|529077753|ref|YP_008376756.1|	-	0.0011	18.2	4.1	0.0037	16.4	0.0	3.0	2	1	0	3	3	3	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|529077753|ref|YP_008376756.1|	-	0.0024	17.3	0.0	0.005	16.3	0.0	1.5	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|529077753|ref|YP_008376756.1|	-	0.0029	17.8	0.1	0.015	15.5	0.0	2.3	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
NAD_binding_7	PF13241.6	gi|529077753|ref|YP_008376756.1|	-	0.0037	17.7	0.0	0.032	14.7	0.0	2.2	2	0	0	2	2	2	1	Putative	NAD(P)-binding
Trp_halogenase	PF04820.14	gi|529077753|ref|YP_008376756.1|	-	0.062	12.1	1.8	3.3	6.5	0.1	2.7	3	0	0	3	3	3	0	Tryptophan	halogenase
Thi4	PF01946.17	gi|529077753|ref|YP_008376756.1|	-	0.11	11.7	0.0	0.55	9.4	0.0	2.0	2	0	0	2	2	2	0	Thi4	family
DUF1641	PF07849.11	gi|529077754|ref|YP_008376757.1|	-	5.7e-15	54.9	2.4	1.5e-13	50.3	0.3	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF1641)
DUF4745	PF15923.5	gi|529077754|ref|YP_008376757.1|	-	0.077	13.0	0.1	0.15	12.1	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4745)
Pyr_redox_2	PF07992.14	gi|529077755|ref|YP_008376758.1|	-	5.3e-25	88.2	0.1	2e-24	86.4	0.1	1.7	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|529077755|ref|YP_008376758.1|	-	9.8e-06	25.6	0.2	0.2	11.7	0.0	2.5	2	0	0	2	2	2	2	FAD-NAD(P)-binding
DAO	PF01266.24	gi|529077755|ref|YP_008376758.1|	-	0.00019	21.1	0.6	0.33	10.5	0.0	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.27	gi|529077755|ref|YP_008376758.1|	-	0.036	14.6	0.7	15	6.2	0.5	2.4	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|529077755|ref|YP_008376758.1|	-	0.048	12.7	0.1	0.28	10.2	0.1	1.9	1	1	0	2	2	2	0	Lycopene	cyclase	protein
HI0933_like	PF03486.14	gi|529077755|ref|YP_008376758.1|	-	0.12	11.1	0.1	16	4.0	0.0	2.9	3	0	0	3	3	3	0	HI0933-like	protein
TusA	PF01206.17	gi|529077756|ref|YP_008376759.1|	-	1.3e-14	53.8	0.0	1.3e-14	53.7	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DrsE_2	PF13686.6	gi|529077757|ref|YP_008376760.1|	-	6.1e-12	45.7	0.3	9.9e-06	25.5	0.1	2.0	1	1	1	2	2	2	2	DsrE/DsrF/DrsH-like	family
DrsE	PF02635.15	gi|529077757|ref|YP_008376760.1|	-	0.00097	19.5	0.0	0.0014	18.9	0.0	1.3	1	0	0	1	1	1	1	DsrE/DsrF-like	family
MgtE	PF01769.16	gi|529077758|ref|YP_008376761.1|	-	8e-19	68.2	6.1	8e-19	68.2	6.1	1.7	2	0	0	2	2	2	1	Divalent	cation	transporter
TetR_C_16	PF17920.1	gi|529077758|ref|YP_008376761.1|	-	3.1	8.1	11.4	0.36	11.1	5.7	2.0	2	0	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
MgtE	PF01769.16	gi|529077759|ref|YP_008376762.1|	-	9.6e-21	74.4	13.1	9.6e-21	74.4	13.1	1.4	2	0	0	2	2	2	1	Divalent	cation	transporter
TetR_C_14	PF17754.1	gi|529077759|ref|YP_008376762.1|	-	0.02	14.8	0.6	0.02	14.8	0.6	2.2	3	0	0	3	3	3	0	MftR	C-terminal	domain
HAD_2	PF13419.6	gi|529077760|ref|YP_008376763.1|	-	9.3e-22	78.0	0.0	1.5e-21	77.3	0.0	1.3	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|529077760|ref|YP_008376763.1|	-	1.8e-12	48.0	3.9	1.5e-11	45.0	3.9	1.9	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|529077760|ref|YP_008376763.1|	-	5.9e-10	39.1	1.8	1.1e-09	38.2	0.2	2.1	2	0	0	2	2	2	1	HAD-hyrolase-like
HAD	PF12710.7	gi|529077760|ref|YP_008376763.1|	-	2.7e-05	24.7	4.0	3.9e-05	24.1	4.0	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
FtsJ	PF01728.19	gi|529077761|ref|YP_008376764.1|	-	2.4e-54	184.1	0.0	2.9e-54	183.9	0.0	1.1	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
TRAM	PF01938.20	gi|529077761|ref|YP_008376764.1|	-	5.6e-12	45.5	2.2	1e-11	44.6	2.2	1.5	1	0	0	1	1	1	1	TRAM	domain
Methyltransf_31	PF13847.6	gi|529077761|ref|YP_008376764.1|	-	0.00056	19.7	0.0	0.0078	16.0	0.0	2.1	2	0	0	2	2	2	1	Methyltransferase	domain
TrkA_N	PF02254.18	gi|529077761|ref|YP_008376764.1|	-	0.051	13.8	0.1	0.094	13.0	0.1	1.4	1	0	0	1	1	1	0	TrkA-N	domain
Methyltransf_23	PF13489.6	gi|529077761|ref|YP_008376764.1|	-	0.073	12.9	0.0	0.12	12.1	0.0	1.4	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|529077761|ref|YP_008376764.1|	-	0.075	13.8	0.3	0.25	12.1	0.3	2.1	1	1	0	1	1	1	0	Methyltransferase	domain
DUF1743	PF08489.11	gi|529077762|ref|YP_008376765.1|	-	1.2e-37	128.5	0.0	1.9e-37	127.8	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1743)
OrfB_Zn_ribbon	PF07282.11	gi|529077762|ref|YP_008376765.1|	-	0.016	15.1	1.2	0.031	14.2	1.2	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
IBR	PF01485.21	gi|529077762|ref|YP_008376765.1|	-	0.021	15.0	0.1	0.033	14.4	0.1	1.2	1	0	0	1	1	1	0	IBR	domain,	a	half	RING-finger	domain
Zn-ribbon_8	PF09723.10	gi|529077762|ref|YP_008376765.1|	-	0.023	14.8	1.5	4.5	7.5	0.1	2.5	2	0	0	2	2	2	0	Zinc	ribbon	domain
RNA_POL_M_15KD	PF02150.16	gi|529077762|ref|YP_008376765.1|	-	0.031	14.2	1.4	0.058	13.3	1.4	1.4	1	0	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
HypA	PF01155.19	gi|529077762|ref|YP_008376765.1|	-	0.049	13.6	0.1	0.093	12.8	0.1	1.4	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn_Tnp_IS1595	PF12760.7	gi|529077762|ref|YP_008376765.1|	-	0.051	13.5	1.9	0.11	12.5	1.9	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
C1_1	PF00130.22	gi|529077762|ref|YP_008376765.1|	-	0.087	12.7	0.2	0.15	11.9	0.2	1.3	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Zn_ribbon_recom	PF13408.6	gi|529077762|ref|YP_008376765.1|	-	0.11	13.0	1.2	0.2	12.2	1.2	1.4	1	0	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
tRNA_anti-codon	PF01336.25	gi|529077762|ref|YP_008376765.1|	-	0.12	12.4	0.1	0.53	10.3	0.1	2.0	1	1	1	2	2	2	0	OB-fold	nucleic	acid	binding	domain
DZR	PF12773.7	gi|529077762|ref|YP_008376765.1|	-	0.17	12.0	1.5	0.3	11.1	1.5	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-RING_7	PF02591.15	gi|529077762|ref|YP_008376765.1|	-	0.17	12.1	2.3	0.95	9.7	0.2	2.6	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
zinc-ribbons_6	PF07191.12	gi|529077762|ref|YP_008376765.1|	-	0.24	11.4	0.7	0.39	10.7	0.7	1.3	1	0	0	1	1	1	0	zinc-ribbons
zf-ISL3	PF14690.6	gi|529077762|ref|YP_008376765.1|	-	0.25	12.0	2.6	11	6.7	0.5	2.5	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
TF_Zn_Ribbon	PF08271.12	gi|529077762|ref|YP_008376765.1|	-	3	7.4	7.8	11	5.6	0.4	3.2	2	1	2	4	4	4	0	TFIIB	zinc-binding
Rubredoxin_2	PF18073.1	gi|529077762|ref|YP_008376765.1|	-	3.4	7.5	5.1	1.7	8.4	0.5	2.4	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zf-IS66	PF13005.7	gi|529077762|ref|YP_008376765.1|	-	8.8	6.8	7.7	3.6	8.1	0.5	2.7	1	1	2	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
HTH_3	PF01381.22	gi|529077763|ref|YP_008376766.1|	-	3.9e-10	39.6	0.0	7.6e-10	38.7	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|529077763|ref|YP_008376766.1|	-	4.3e-07	30.2	1.6	6.4e-07	29.6	0.0	2.1	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|529077763|ref|YP_008376766.1|	-	6.4e-07	29.3	0.0	1.4e-06	28.2	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|529077763|ref|YP_008376766.1|	-	0.00049	20.0	0.0	0.0014	18.5	0.0	1.7	1	0	0	1	1	1	1	HTH	domain
HTH_25	PF13413.6	gi|529077763|ref|YP_008376766.1|	-	0.00099	18.9	0.0	0.0022	17.8	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|529077763|ref|YP_008376766.1|	-	0.007	15.9	0.0	0.016	14.7	0.0	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_8	PF02954.19	gi|529077763|ref|YP_008376766.1|	-	0.015	15.1	0.0	0.039	13.7	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
HTH_23	PF13384.6	gi|529077763|ref|YP_008376766.1|	-	0.045	13.6	0.7	0.084	12.7	0.0	1.8	2	0	0	2	2	1	0	Homeodomain-like	domain
HTH_10	PF04967.12	gi|529077763|ref|YP_008376766.1|	-	0.078	12.8	0.0	0.17	11.7	0.0	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
MarR	PF01047.22	gi|529077763|ref|YP_008376766.1|	-	0.12	12.3	0.0	6	6.9	0.0	2.6	2	0	0	2	2	2	0	MarR	family
NUMOD1	PF07453.13	gi|529077763|ref|YP_008376766.1|	-	0.15	12.3	0.0	0.3	11.4	0.0	1.5	1	0	0	1	1	1	0	NUMOD1	domain
HTH_AraC	PF00165.23	gi|529077763|ref|YP_008376766.1|	-	0.21	11.8	0.0	0.41	10.8	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
Epimerase_2	PF02350.19	gi|529077764|ref|YP_008376767.1|	-	6.9e-27	94.2	0.0	1.7e-16	60.0	0.0	2.1	2	0	0	2	2	2	2	UDP-N-acetylglucosamine	2-epimerase
HpcH_HpaI	PF03328.14	gi|529077765|ref|YP_008376768.1|	-	2.5e-29	102.0	0.0	3.5e-29	101.5	0.0	1.1	1	0	0	1	1	1	1	HpcH/HpaI	aldolase/citrate	lyase	family
GST_N_3	PF13417.6	gi|529077766|ref|YP_008376769.1|	-	1.8e-16	60.3	0.0	2.2e-16	60.0	0.0	1.0	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
Glutaredoxin	PF00462.24	gi|529077766|ref|YP_008376769.1|	-	3.1e-15	56.1	0.0	4.9e-15	55.5	0.0	1.3	1	0	0	1	1	1	1	Glutaredoxin
GST_N_2	PF13409.6	gi|529077766|ref|YP_008376769.1|	-	4.6e-11	42.8	0.0	5.4e-11	42.6	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_N	PF02798.20	gi|529077766|ref|YP_008376769.1|	-	0.001	19.3	0.0	0.0013	19.0	0.0	1.2	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
DUF836	PF05768.14	gi|529077766|ref|YP_008376769.1|	-	0.011	16.2	0.2	0.017	15.5	0.2	1.5	1	1	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
Thioredoxin_4	PF13462.6	gi|529077766|ref|YP_008376769.1|	-	0.015	15.5	0.1	0.13	12.4	0.0	1.9	1	1	1	2	2	2	0	Thioredoxin
DUF4224	PF13986.6	gi|529077766|ref|YP_008376769.1|	-	0.033	14.1	0.1	0.092	12.7	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4224)
Thioredoxin_2	PF13098.6	gi|529077766|ref|YP_008376769.1|	-	0.034	14.6	0.0	0.039	14.4	0.0	1.2	1	0	0	1	1	1	0	Thioredoxin-like	domain
Xan_ur_permease	PF00860.20	gi|529077767|ref|YP_008376770.1|	-	1.7e-35	122.5	41.7	3.3e-35	121.5	41.7	1.5	1	1	0	1	1	1	1	Permease	family
ChpA-C	PF03777.13	gi|529077767|ref|YP_008376770.1|	-	0.12	12.3	1.2	0.24	11.3	0.1	2.0	2	0	0	2	2	2	0	ChpA-C
Pribosyltran	PF00156.27	gi|529077768|ref|YP_008376771.1|	-	7.1e-15	54.9	0.6	1.1e-14	54.2	0.4	1.5	2	0	0	2	2	2	1	Phosphoribosyl	transferase	domain
HTH_3	PF01381.22	gi|529077768|ref|YP_008376771.1|	-	4.9e-06	26.5	0.0	3.2e-05	23.9	0.0	2.3	3	0	0	3	3	3	1	Helix-turn-helix
HTH_24	PF13412.6	gi|529077768|ref|YP_008376771.1|	-	0.0042	16.6	0.3	0.031	13.8	0.1	2.3	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_31	PF13560.6	gi|529077768|ref|YP_008376771.1|	-	0.0046	17.3	2.4	0.0075	16.6	0.8	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|529077768|ref|YP_008376771.1|	-	0.11	12.3	1.7	0.25	11.2	0.1	2.5	3	1	0	3	3	3	0	AsnC-type	helix-turn-helix	domain
Pribosyltran	PF00156.27	gi|529077769|ref|YP_008376772.1|	-	2.4e-12	46.7	1.4	3.1e-12	46.3	1.4	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|529077769|ref|YP_008376772.1|	-	0.00035	20.1	0.1	0.00046	19.7	0.1	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.6	gi|529077769|ref|YP_008376772.1|	-	0.16	11.4	1.2	0.2	11.2	0.3	1.5	2	0	0	2	2	2	0	Phosphoribosyl	transferase
bPH_2	PF03703.14	gi|529077770|ref|YP_008376773.1|	-	2.3e-19	69.3	0.1	3.7e-19	68.7	0.1	1.2	1	0	0	1	1	1	1	Bacterial	PH	domain
Flagellin_N	PF00669.20	gi|529077771|ref|YP_008376774.1|	-	0.059	13.5	0.1	6.6	6.8	0.0	2.9	3	1	1	4	4	4	0	Bacterial	flagellin	N-terminal	helical	region
CREPT	PF16566.5	gi|529077771|ref|YP_008376774.1|	-	0.88	9.7	6.7	11	6.2	0.0	3.8	2	1	1	4	4	4	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
Phage_Mu_Gam	PF07352.12	gi|529077771|ref|YP_008376774.1|	-	1.4	8.8	8.6	2.1	8.3	0.4	3.3	3	2	0	3	3	3	0	Bacteriophage	Mu	Gam	like	protein
DUF501	PF04417.12	gi|529077771|ref|YP_008376774.1|	-	3.4	7.5	13.4	0.48	10.2	0.2	3.7	3	1	1	4	4	4	0	Protein	of	unknown	function	(DUF501)
ISG65-75	PF11727.8	gi|529077771|ref|YP_008376774.1|	-	6	6.0	6.3	1.1	8.5	0.1	2.6	2	1	2	4	4	4	0	Invariant	surface	glycoprotein
PRA-CH	PF01502.18	gi|529077772|ref|YP_008376775.1|	-	7.2e-34	115.5	0.2	1.6e-33	114.4	0.1	1.6	2	0	0	2	2	2	1	Phosphoribosyl-AMP	cyclohydrolase
BNR_4	PF15892.5	gi|529077772|ref|YP_008376775.1|	-	0.019	14.3	0.0	0.024	14.0	0.0	1.2	1	0	0	1	1	1	0	BNR	repeat-containing	family	member
Arc_PepC_II	PF06847.11	gi|529077773|ref|YP_008376776.1|	-	1.1e-10	41.8	0.0	1.8e-08	34.8	0.1	2.2	2	0	0	2	2	2	2	Archaeal	Peptidase	A24	C-terminus	Type	II
Peptidase_A24	PF01478.18	gi|529077773|ref|YP_008376776.1|	-	6.2e-09	36.2	10.2	1.4e-08	35.1	10.2	1.6	1	0	0	1	1	1	1	Type	IV	leader	peptidase	family
Fer2	PF00111.27	gi|529077774|ref|YP_008376777.1|	-	2.7e-15	56.1	0.3	3.7e-15	55.6	0.3	1.2	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.6	gi|529077774|ref|YP_008376777.1|	-	0.059	13.4	0.1	0.14	12.2	0.1	1.6	1	1	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
NPV_P10	PF05531.12	gi|529077775|ref|YP_008376778.1|	-	2.6e-08	34.2	5.9	0.012	16.0	0.1	4.1	1	1	3	4	4	4	3	Nucleopolyhedrovirus	P10	protein
Baculo_PEP_C	PF04513.12	gi|529077775|ref|YP_008376778.1|	-	3.9e-07	30.2	0.8	5.6e-05	23.2	1.4	2.3	1	1	1	2	2	2	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
BLOC1_2	PF10046.9	gi|529077775|ref|YP_008376778.1|	-	1.7e-06	28.2	3.1	0.071	13.4	0.3	3.4	1	1	3	4	4	4	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Spc7	PF08317.11	gi|529077775|ref|YP_008376778.1|	-	2.1e-06	26.9	3.2	3.3e-05	22.9	3.8	2.0	1	1	1	2	2	2	2	Spc7	kinetochore	protein
CLZ	PF16526.5	gi|529077775|ref|YP_008376778.1|	-	2.2e-06	27.9	7.1	0.024	15.0	0.0	4.1	2	1	3	5	5	5	2	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
AAA_13	PF13166.6	gi|529077775|ref|YP_008376778.1|	-	4.4e-06	25.7	0.8	6.6e-06	25.1	0.8	1.2	1	0	0	1	1	1	1	AAA	domain
XhlA	PF10779.9	gi|529077775|ref|YP_008376778.1|	-	4.9e-06	26.7	7.4	0.017	15.3	1.2	4.1	3	1	1	4	4	4	2	Haemolysin	XhlA
DUF1664	PF07889.12	gi|529077775|ref|YP_008376778.1|	-	5.3e-06	26.5	3.5	0.0088	16.1	1.3	3.1	1	1	2	3	3	3	1	Protein	of	unknown	function	(DUF1664)
ABC_tran_CTD	PF16326.5	gi|529077775|ref|YP_008376778.1|	-	1e-05	25.7	4.5	0.005	17.1	2.7	3.3	1	1	2	3	3	3	1	ABC	transporter	C-terminal	domain
FlaC_arch	PF05377.11	gi|529077775|ref|YP_008376778.1|	-	1.1e-05	25.7	7.0	0.012	15.9	0.4	4.3	3	1	2	5	5	4	2	Flagella	accessory	protein	C	(FlaC)
CENP-F_leu_zip	PF10473.9	gi|529077775|ref|YP_008376778.1|	-	2.6e-05	24.2	19.3	0.0008	19.4	5.7	2.2	1	1	1	2	2	2	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
MscS_porin	PF12795.7	gi|529077775|ref|YP_008376778.1|	-	3.3e-05	23.6	2.2	0.00086	18.9	3.4	2.3	2	1	0	2	2	2	1	Mechanosensitive	ion	channel	porin	domain
Filament	PF00038.21	gi|529077775|ref|YP_008376778.1|	-	3.9e-05	23.4	1.9	0.0038	16.9	0.1	2.1	1	1	1	2	2	2	1	Intermediate	filament	protein
IFT57	PF10498.9	gi|529077775|ref|YP_008376778.1|	-	4.4e-05	22.6	1.2	4.4e-05	22.6	1.2	1.9	2	1	1	3	3	2	1	Intra-flagellar	transport	protein	57
DUF812	PF05667.11	gi|529077775|ref|YP_008376778.1|	-	5.3e-05	22.3	0.2	6.2e-05	22.1	0.2	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF812)
APG6_N	PF17675.1	gi|529077775|ref|YP_008376778.1|	-	9.7e-05	22.9	5.1	0.00025	21.6	5.1	1.7	1	1	0	1	1	1	1	Apg6	coiled-coil	region
Laminin_II	PF06009.12	gi|529077775|ref|YP_008376778.1|	-	0.0001	22.3	3.6	0.00038	20.5	2.2	2.2	1	1	2	3	3	3	1	Laminin	Domain	II
HrpB7	PF09486.10	gi|529077775|ref|YP_008376778.1|	-	0.00015	22.2	11.5	0.052	13.9	3.7	2.8	1	1	1	2	2	2	2	Bacterial	type	III	secretion	protein	(HrpB7)
EzrA	PF06160.12	gi|529077775|ref|YP_008376778.1|	-	0.00024	19.4	1.5	0.0011	17.2	1.4	1.7	1	1	1	2	2	2	1	Septation	ring	formation	regulator,	EzrA
PspA_IM30	PF04012.12	gi|529077775|ref|YP_008376778.1|	-	0.00024	20.7	4.3	0.00024	20.7	2.6	1.8	2	0	0	2	2	1	1	PspA/IM30	family
DUF948	PF06103.11	gi|529077775|ref|YP_008376778.1|	-	0.00027	21.1	7.2	0.03	14.6	0.3	2.6	1	1	1	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF948)
ADIP	PF11559.8	gi|529077775|ref|YP_008376778.1|	-	0.00034	20.7	2.0	0.00066	19.8	1.2	1.7	1	1	1	2	2	2	1	Afadin-	and	alpha	-actinin-Binding
Fib_alpha	PF08702.10	gi|529077775|ref|YP_008376778.1|	-	0.00072	19.8	0.7	0.024	14.8	0.2	2.3	1	1	1	2	2	2	1	Fibrinogen	alpha/beta	chain	family
Prefoldin	PF02996.17	gi|529077775|ref|YP_008376778.1|	-	0.001	19.0	3.2	0.22	11.4	0.2	3.5	1	1	1	3	3	3	1	Prefoldin	subunit
DUF2730	PF10805.8	gi|529077775|ref|YP_008376778.1|	-	0.001	19.1	4.7	0.28	11.3	0.1	2.6	2	1	1	3	3	2	1	Protein	of	unknown	function	(DUF2730)
SlyX	PF04102.12	gi|529077775|ref|YP_008376778.1|	-	0.0011	19.5	9.3	0.14	12.8	0.8	3.7	1	1	2	3	3	3	1	SlyX
Taxilin	PF09728.9	gi|529077775|ref|YP_008376778.1|	-	0.0012	18.1	0.0	0.0018	17.6	0.0	1.1	1	0	0	1	1	1	1	Myosin-like	coiled-coil	protein
Prefoldin_2	PF01920.20	gi|529077775|ref|YP_008376778.1|	-	0.0015	18.4	4.2	5.3	7.1	0.9	3.5	1	1	2	3	3	3	0	Prefoldin	subunit
DUF4618	PF15397.6	gi|529077775|ref|YP_008376778.1|	-	0.0018	17.8	1.6	0.018	14.5	2.4	1.9	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4618)
HMMR_N	PF15905.5	gi|529077775|ref|YP_008376778.1|	-	0.0024	17.4	3.7	0.0094	15.5	1.2	2.1	1	1	0	1	1	1	1	Hyaluronan	mediated	motility	receptor	N-terminal
FliJ	PF02050.16	gi|529077775|ref|YP_008376778.1|	-	0.0029	17.8	0.2	0.018	15.3	0.3	2.0	2	0	0	2	2	2	1	Flagellar	FliJ	protein
DUF3584	PF12128.8	gi|529077775|ref|YP_008376778.1|	-	0.003	15.2	3.1	0.0038	14.8	3.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
CALCOCO1	PF07888.11	gi|529077775|ref|YP_008376778.1|	-	0.003	16.5	5.4	0.0043	16.0	5.4	1.2	1	0	0	1	1	1	1	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
TMF_TATA_bd	PF12325.8	gi|529077775|ref|YP_008376778.1|	-	0.0032	17.7	6.0	0.17	12.1	3.3	2.7	1	1	2	3	3	3	1	TATA	element	modulatory	factor	1	TATA	binding
Lebercilin	PF15619.6	gi|529077775|ref|YP_008376778.1|	-	0.0034	17.1	0.8	0.0062	16.2	0.8	1.4	1	0	0	1	1	1	1	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
ATG16	PF08614.11	gi|529077775|ref|YP_008376778.1|	-	0.0036	17.5	9.5	0.0036	17.5	9.5	2.5	1	1	1	2	2	2	1	Autophagy	protein	16	(ATG16)
MAD	PF05557.13	gi|529077775|ref|YP_008376778.1|	-	0.0041	15.5	0.8	0.0051	15.3	0.8	1.1	1	0	0	1	1	1	1	Mitotic	checkpoint	protein
Tropomyosin_1	PF12718.7	gi|529077775|ref|YP_008376778.1|	-	0.0049	17.0	8.2	0.1	12.8	8.2	2.4	1	1	0	1	1	1	1	Tropomyosin	like
PI3K_P85_iSH2	PF16454.5	gi|529077775|ref|YP_008376778.1|	-	0.0053	16.4	0.5	0.081	12.5	0.1	2.3	1	1	1	2	2	2	1	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
Laminin_I	PF06008.14	gi|529077775|ref|YP_008376778.1|	-	0.006	16.3	2.4	0.054	13.2	2.6	1.9	1	1	1	2	2	2	1	Laminin	Domain	I
FPP	PF05911.11	gi|529077775|ref|YP_008376778.1|	-	0.007	14.6	1.4	0.0087	14.3	1.4	1.2	1	0	0	1	1	1	1	Filament-like	plant	protein,	long	coiled-coil
DUF4407	PF14362.6	gi|529077775|ref|YP_008376778.1|	-	0.0073	15.7	4.6	0.0075	15.7	3.7	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4407)
Spectrin	PF00435.21	gi|529077775|ref|YP_008376778.1|	-	0.0073	16.8	2.9	3	8.4	0.1	3.1	1	1	2	3	3	2	0	Spectrin	repeat
DUF1978	PF09321.10	gi|529077775|ref|YP_008376778.1|	-	0.0081	15.5	2.7	0.012	14.9	2.7	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1978)
HAP1_N	PF04849.13	gi|529077775|ref|YP_008376778.1|	-	0.0083	15.4	2.2	0.013	14.7	2.2	1.3	1	0	0	1	1	1	1	HAP1	N-terminal	conserved	region
V-SNARE_C	PF12352.8	gi|529077775|ref|YP_008376778.1|	-	0.0092	16.2	0.3	0.022	15.1	0.3	1.7	1	0	0	1	1	1	1	Snare	region	anchored	in	the	vesicle	membrane	C-terminus
SKA2	PF16740.5	gi|529077775|ref|YP_008376778.1|	-	0.011	15.4	0.4	5.3	6.9	0.1	2.7	1	1	1	2	2	2	0	Spindle	and	kinetochore-associated	protein	2
DUF4795	PF16043.5	gi|529077775|ref|YP_008376778.1|	-	0.012	15.3	2.1	0.29	10.7	0.6	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4795)
Golgin_A5	PF09787.9	gi|529077775|ref|YP_008376778.1|	-	0.012	15.1	4.5	0.019	14.5	4.5	1.2	1	0	0	1	1	1	0	Golgin	subfamily	A	member	5
COG2	PF06148.11	gi|529077775|ref|YP_008376778.1|	-	0.012	15.7	3.9	0.93	9.6	0.6	2.6	1	1	1	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Fez1	PF06818.15	gi|529077775|ref|YP_008376778.1|	-	0.014	15.9	2.4	0.026	15.0	2.4	1.4	1	0	0	1	1	1	0	Fez1
BST2	PF16716.5	gi|529077775|ref|YP_008376778.1|	-	0.014	16.0	2.4	0.029	15.0	2.3	1.6	1	1	0	1	1	1	0	Bone	marrow	stromal	antigen	2
Uds1	PF15456.6	gi|529077775|ref|YP_008376778.1|	-	0.015	15.5	3.0	1.3	9.2	0.6	3.0	1	1	1	2	2	2	0	Up-regulated	During	Septation
Snapin_Pallidin	PF14712.6	gi|529077775|ref|YP_008376778.1|	-	0.018	15.5	0.6	0.27	11.7	0.4	2.5	1	1	0	2	2	2	0	Snapin/Pallidin
DUF3450	PF11932.8	gi|529077775|ref|YP_008376778.1|	-	0.018	14.4	3.0	0.057	12.7	2.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3450)
DUF745	PF05335.13	gi|529077775|ref|YP_008376778.1|	-	0.019	14.7	2.9	0.035	13.8	2.8	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF745)
DUF724	PF05266.14	gi|529077775|ref|YP_008376778.1|	-	0.02	14.7	1.0	0.033	14.0	1.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
DUF4200	PF13863.6	gi|529077775|ref|YP_008376778.1|	-	0.021	15.2	1.3	1.6	9.1	2.0	3.0	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4200)
CorA	PF01544.18	gi|529077775|ref|YP_008376778.1|	-	0.021	14.1	8.3	1.8	7.8	5.3	2.7	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
Leu_zip	PF15294.6	gi|529077775|ref|YP_008376778.1|	-	0.021	14.3	1.9	0.062	12.8	1.6	1.7	1	1	0	1	1	1	0	Leucine	zipper
V_ATPase_I	PF01496.19	gi|529077775|ref|YP_008376778.1|	-	0.022	12.7	3.2	0.13	10.1	3.0	1.9	1	1	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
GAS	PF13851.6	gi|529077775|ref|YP_008376778.1|	-	0.022	14.1	1.4	2.2	7.6	0.0	2.1	1	1	1	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
COG6	PF06419.11	gi|529077775|ref|YP_008376778.1|	-	0.023	12.9	1.8	0.15	10.3	0.9	2.0	1	1	1	2	2	2	0	Conserved	oligomeric	complex	COG6
Dynamitin	PF04912.14	gi|529077775|ref|YP_008376778.1|	-	0.024	14.0	1.2	0.024	14.0	1.2	2.6	1	1	1	2	2	2	0	Dynamitin
DLP_helical	PF18709.1	gi|529077775|ref|YP_008376778.1|	-	0.026	13.7	4.3	0.052	12.7	4.3	1.4	1	1	0	1	1	1	0	Dynamin-like	helical	domain
TMPIT	PF07851.13	gi|529077775|ref|YP_008376778.1|	-	0.028	13.7	0.1	0.15	11.3	0.3	1.8	1	1	1	2	2	2	0	TMPIT-like	protein
Lectin_N	PF03954.14	gi|529077775|ref|YP_008376778.1|	-	0.03	14.1	1.4	0.062	13.1	1.2	1.6	1	1	0	1	1	1	0	Hepatic	lectin,	N-terminal	domain
TolA_bind_tri	PF16331.5	gi|529077775|ref|YP_008376778.1|	-	0.032	14.3	6.4	0.045	13.8	0.2	2.9	2	1	0	2	2	2	0	TolA	binding	protein	trimerisation
CCCAP	PF15964.5	gi|529077775|ref|YP_008376778.1|	-	0.032	12.5	3.2	0.045	12.0	3.2	1.1	1	0	0	1	1	1	0	Centrosomal	colon	cancer	autoantigen	protein	family
Sec2p	PF06428.11	gi|529077775|ref|YP_008376778.1|	-	0.033	14.2	2.7	1.1	9.3	0.5	2.6	2	1	1	3	3	2	0	GDP/GTP	exchange	factor	Sec2p
DUF3552	PF12072.8	gi|529077775|ref|YP_008376778.1|	-	0.035	13.5	3.9	0.049	13.0	3.2	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
CdvA	PF18822.1	gi|529077775|ref|YP_008376778.1|	-	0.036	13.9	2.8	5.5	6.8	0.2	3.5	1	1	1	2	2	2	0	CdvA-like	coiled-coil	domain
DUF4988	PF16378.5	gi|529077775|ref|YP_008376778.1|	-	0.037	13.7	2.0	5.5	6.6	0.1	2.8	2	1	0	3	3	2	0	Domain	of	unknown	function
DUF16	PF01519.16	gi|529077775|ref|YP_008376778.1|	-	0.038	14.5	3.3	0.24	11.9	0.9	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	DUF16
DHR10	PF18595.1	gi|529077775|ref|YP_008376778.1|	-	0.038	14.1	8.5	0.38	10.8	4.3	2.8	1	1	1	2	2	2	0	Designed	helical	repeat	protein	10	domain
UPF0242	PF06785.11	gi|529077775|ref|YP_008376778.1|	-	0.038	14.1	2.4	0.1	12.7	1.9	1.7	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Atg14	PF10186.9	gi|529077775|ref|YP_008376778.1|	-	0.039	13.1	0.3	0.06	12.4	0.3	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
LPP	PF04728.13	gi|529077775|ref|YP_008376778.1|	-	0.044	14.2	0.1	4.7	7.7	0.1	2.8	2	0	0	2	2	2	0	Lipoprotein	leucine-zipper
Rab5-bind	PF09311.11	gi|529077775|ref|YP_008376778.1|	-	0.047	13.1	4.5	0.25	10.7	4.9	1.8	1	1	1	2	2	2	0	Rabaptin-like	protein
Syntaxin-6_N	PF09177.11	gi|529077775|ref|YP_008376778.1|	-	0.049	14.2	8.0	1	10.0	1.9	2.9	1	1	2	3	3	3	0	Syntaxin	6,	N-terminal
Gp58	PF07902.11	gi|529077775|ref|YP_008376778.1|	-	0.052	11.8	0.2	0.079	11.2	0.2	1.2	1	0	0	1	1	1	0	gp58-like	protein
CCDC144C	PF14915.6	gi|529077775|ref|YP_008376778.1|	-	0.056	12.6	3.2	0.33	10.0	2.6	1.8	1	1	1	2	2	2	0	CCDC144C	protein	coiled-coil	region
Osmo_CC	PF08946.10	gi|529077775|ref|YP_008376778.1|	-	0.061	13.6	8.7	29	5.0	0.0	5.0	2	1	3	5	5	4	0	Osmosensory	transporter	coiled	coil
EMP24_GP25L	PF01105.24	gi|529077775|ref|YP_008376778.1|	-	0.069	13.1	5.0	8.9	6.2	0.1	3.2	1	1	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
WASH_WAHD	PF11945.8	gi|529077775|ref|YP_008376778.1|	-	0.072	12.6	1.2	1.1	8.7	0.2	2.4	1	1	1	2	2	2	0	WAHD	domain	of	WASH	complex
Nsp1_C	PF05064.13	gi|529077775|ref|YP_008376778.1|	-	0.073	12.9	4.1	0.72	9.7	1.1	2.7	1	1	1	2	2	2	0	Nsp1-like	C-terminal	region
ERM	PF00769.19	gi|529077775|ref|YP_008376778.1|	-	0.081	12.7	7.5	0.043	13.6	5.3	1.7	2	0	0	2	2	1	0	Ezrin/radixin/moesin	family
Bacillus_HBL	PF05791.11	gi|529077775|ref|YP_008376778.1|	-	0.081	12.7	0.9	1.4	8.7	0.2	2.1	1	1	1	2	2	2	0	Bacillus	haemolytic	enterotoxin	(HBL)
BRE1	PF08647.11	gi|529077775|ref|YP_008376778.1|	-	0.086	12.9	0.5	0.3	11.2	0.3	1.7	1	1	0	1	1	1	0	BRE1	E3	ubiquitin	ligase
HSBP1	PF06825.12	gi|529077775|ref|YP_008376778.1|	-	0.087	12.7	2.1	2.4	8.1	0.1	3.5	3	1	1	4	4	3	0	Heat	shock	factor	binding	protein	1
Seryl_tRNA_N	PF02403.22	gi|529077775|ref|YP_008376778.1|	-	0.091	13.0	2.4	3.9	7.8	0.3	2.5	1	1	1	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF4472	PF14739.6	gi|529077775|ref|YP_008376778.1|	-	0.093	13.5	4.3	4.4	8.1	0.2	2.4	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4472)
Effector_1	PF04518.12	gi|529077775|ref|YP_008376778.1|	-	0.094	11.8	0.4	0.13	11.3	0.4	1.1	1	0	0	1	1	1	0	Effector	from	type	III	secretion	system
TraF_2	PF13729.6	gi|529077775|ref|YP_008376778.1|	-	0.099	12.0	4.5	0.11	11.9	2.1	2.0	1	1	1	2	2	2	0	F	plasmid	transfer	operon,	TraF,	protein
COG5	PF10392.9	gi|529077775|ref|YP_008376778.1|	-	0.1	12.8	1.2	0.91	9.7	0.2	2.0	1	1	1	2	2	2	0	Golgi	transport	complex	subunit	5
Sec34	PF04136.15	gi|529077775|ref|YP_008376778.1|	-	0.1	12.5	1.5	1	9.3	0.3	2.2	1	1	1	2	2	2	0	Sec34-like	family
DUF641	PF04859.12	gi|529077775|ref|YP_008376778.1|	-	0.11	12.8	2.6	2.2	8.7	2.6	2.5	1	1	0	1	1	1	0	Plant	protein	of	unknown	function	(DUF641)
ISG65-75	PF11727.8	gi|529077775|ref|YP_008376778.1|	-	0.12	11.6	1.0	0.19	10.9	1.0	1.3	1	0	0	1	1	1	0	Invariant	surface	glycoprotein
MCPsignal	PF00015.21	gi|529077775|ref|YP_008376778.1|	-	0.13	12.1	5.2	0.65	9.8	3.8	2.1	1	1	1	2	2	2	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
MutS_III	PF05192.18	gi|529077775|ref|YP_008376778.1|	-	0.14	12.4	4.3	0.27	11.5	4.3	1.4	1	0	0	1	1	1	0	MutS	domain	III
TACC_C	PF05010.14	gi|529077775|ref|YP_008376778.1|	-	0.14	11.9	1.2	0.66	9.7	1.2	2.0	1	1	0	1	1	1	0	Transforming	acidic	coiled-coil-containing	protein	(TACC),	C-terminal
YkyA	PF10368.9	gi|529077775|ref|YP_008376778.1|	-	0.14	11.8	2.2	0.75	9.4	0.6	2.1	1	1	1	2	2	2	0	Putative	cell-wall	binding	lipoprotein
YabA	PF06156.13	gi|529077775|ref|YP_008376778.1|	-	0.15	12.7	2.1	10	6.8	1.6	3.0	1	1	2	3	3	3	0	Initiation	control	protein	YabA
RasGAP_C	PF03836.15	gi|529077775|ref|YP_008376778.1|	-	0.15	12.2	0.1	0.58	10.3	0.1	1.8	1	1	0	1	1	1	0	RasGAP	C-terminus
Nup54	PF13874.6	gi|529077775|ref|YP_008376778.1|	-	0.15	12.1	2.3	1.1	9.4	1.0	2.3	1	1	0	2	2	2	0	Nucleoporin	complex	subunit	54
TBCC_N	PF16752.5	gi|529077775|ref|YP_008376778.1|	-	0.17	12.3	1.8	1.5	9.3	0.2	2.7	1	1	1	2	2	2	0	Tubulin-specific	chaperone	C	N-terminal	domain
DUF677	PF05055.12	gi|529077775|ref|YP_008376778.1|	-	0.17	10.7	3.2	0.96	8.3	3.2	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF677)
DUF5082	PF16888.5	gi|529077775|ref|YP_008376778.1|	-	0.17	12.1	2.0	1.4	9.2	0.5	2.5	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF5082)
DivIC	PF04977.15	gi|529077775|ref|YP_008376778.1|	-	0.19	11.5	2.9	13	5.7	0.1	3.0	2	1	1	3	3	3	0	Septum	formation	initiator
THOC7	PF05615.13	gi|529077775|ref|YP_008376778.1|	-	0.19	12.0	5.9	1.2	9.4	5.9	2.1	1	1	0	1	1	1	0	Tho	complex	subunit	7
TRAF_BIRC3_bd	PF16673.5	gi|529077775|ref|YP_008376778.1|	-	0.19	11.5	4.7	3.9	7.3	0.1	3.2	3	1	0	3	3	2	0	TNF	receptor-associated	factor	BIRC3	binding	domain
TPR_MLP1_2	PF07926.12	gi|529077775|ref|YP_008376778.1|	-	0.21	11.7	5.7	1	9.4	5.2	2.3	1	1	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
CC2-LZ	PF16516.5	gi|529077775|ref|YP_008376778.1|	-	0.21	12.0	2.4	0.73	10.2	2.4	1.9	1	1	0	1	1	1	0	Leucine	zipper	of	domain	CC2	of	NEMO,	NF-kappa-B	essential	modulator
bZIP_1	PF00170.21	gi|529077775|ref|YP_008376778.1|	-	0.31	11.2	0.7	56	3.9	0.1	3.3	3	1	1	4	4	3	0	bZIP	transcription	factor
HAUS-augmin3	PF14932.6	gi|529077775|ref|YP_008376778.1|	-	0.37	10.3	3.9	0.61	9.6	3.4	1.4	1	1	0	1	1	1	0	HAUS	augmin-like	complex	subunit	3
SKA1	PF07160.12	gi|529077775|ref|YP_008376778.1|	-	0.46	10.3	4.9	4.2	7.1	0.0	3.4	3	1	1	4	4	2	0	Spindle	and	kinetochore-associated	protein	1
DUF4140	PF13600.6	gi|529077775|ref|YP_008376778.1|	-	0.46	10.9	12.1	1.4e+03	-0.2	12.1	3.9	1	1	0	1	1	0	0	N-terminal	domain	of	unknown	function	(DUF4140)
HIP1_clath_bdg	PF16515.5	gi|529077775|ref|YP_008376778.1|	-	0.5	11.0	6.3	5.3	7.7	1.8	2.5	1	1	1	2	2	2	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
ZapB	PF06005.12	gi|529077775|ref|YP_008376778.1|	-	0.51	10.8	4.0	2.9	8.4	2.5	2.6	1	1	1	2	2	2	0	Cell	division	protein	ZapB
Phage_GP20	PF06810.11	gi|529077775|ref|YP_008376778.1|	-	0.51	10.1	4.0	7.6	6.3	4.0	2.4	1	1	0	1	1	1	0	Phage	minor	structural	protein	GP20
RmuC	PF02646.16	gi|529077775|ref|YP_008376778.1|	-	0.52	9.4	3.5	12	4.9	0.1	2.2	1	1	1	2	2	2	0	RmuC	family
Tropomyosin	PF00261.20	gi|529077775|ref|YP_008376778.1|	-	0.53	9.6	11.8	1	8.7	4.4	2.3	1	1	0	1	1	1	0	Tropomyosin
FUSC	PF04632.12	gi|529077775|ref|YP_008376778.1|	-	0.53	8.7	4.9	0.81	8.1	4.9	1.2	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
YscO	PF07321.12	gi|529077775|ref|YP_008376778.1|	-	0.61	10.0	7.9	6.5	6.7	1.2	2.5	1	1	1	2	2	2	0	Type	III	secretion	protein	YscO
SPX	PF03105.19	gi|529077775|ref|YP_008376778.1|	-	0.62	9.9	8.3	0.9	9.4	8.3	1.2	1	0	0	1	1	1	0	SPX	domain
Fmp27_WPPW	PF10359.9	gi|529077775|ref|YP_008376778.1|	-	0.71	8.7	2.5	4.3	6.1	2.5	2.0	1	1	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
Phasin	PF05597.11	gi|529077775|ref|YP_008376778.1|	-	0.78	9.7	6.3	1.1	9.2	2.5	2.5	1	1	0	2	2	2	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
Prefoldin_3	PF13758.6	gi|529077775|ref|YP_008376778.1|	-	1	9.5	3.6	14	5.8	0.0	3.4	1	1	3	4	4	3	0	Prefoldin	subunit
Spc24	PF08286.11	gi|529077775|ref|YP_008376778.1|	-	1.4	9.2	6.1	9.4	6.5	0.3	3.0	1	1	2	3	3	2	0	Spc24	subunit	of	Ndc80
Cep57_CLD_2	PF14197.6	gi|529077775|ref|YP_008376778.1|	-	1.8	8.7	6.0	33	4.7	2.8	2.7	1	1	1	2	2	2	0	Centrosome	localisation	domain	of	PPC89
CCDC-167	PF15188.6	gi|529077775|ref|YP_008376778.1|	-	2.6	8.4	8.7	22	5.4	5.4	3.0	1	1	1	2	2	2	0	Coiled-coil	domain-containing	protein	167
Csm1_N	PF18504.1	gi|529077775|ref|YP_008376778.1|	-	3.5	8.0	8.5	66	3.9	0.2	3.9	3	1	1	4	4	3	0	Csm1	N-terminal	domain
Ribonuc_L-PSP	PF01042.21	gi|529077776|ref|YP_008376779.1|	-	1.1e-40	138.5	1.2	1.2e-40	138.3	1.2	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
DUF1615	PF07759.12	gi|529077776|ref|YP_008376779.1|	-	0.11	11.7	0.0	0.12	11.5	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1615)
GATase	PF00117.28	gi|529077778|ref|YP_008376781.1|	-	5.3e-23	81.8	0.0	6.7e-23	81.4	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.14	gi|529077778|ref|YP_008376781.1|	-	4.5e-10	39.5	0.0	8.1e-10	38.6	0.0	1.3	1	1	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
SNO	PF01174.19	gi|529077778|ref|YP_008376781.1|	-	2.2e-07	30.9	0.0	2.9e-06	27.3	0.0	2.0	1	1	0	1	1	1	1	SNO	glutamine	amidotransferase	family
Peptidase_C26	PF07722.13	gi|529077778|ref|YP_008376781.1|	-	8.8e-05	22.3	1.1	0.0018	18.1	1.1	2.4	1	1	0	1	1	1	1	Peptidase	C26
DJ-1_PfpI	PF01965.24	gi|529077778|ref|YP_008376781.1|	-	0.0003	20.6	0.0	0.00047	20.0	0.0	1.2	1	0	0	1	1	1	1	DJ-1/PfpI	family
LST1	PF05083.13	gi|529077779|ref|YP_008376782.1|	-	0.088	13.1	0.0	0.22	11.8	0.0	1.6	1	0	0	1	1	1	0	LST-1	protein
UDG	PF03167.19	gi|529077780|ref|YP_008376783.1|	-	6.9e-39	133.3	0.0	8.4e-39	133.0	0.0	1.0	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
DUF1127	PF06568.11	gi|529077780|ref|YP_008376783.1|	-	0.11	12.3	1.4	0.22	11.3	1.4	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1127)
DUF99	PF01949.16	gi|529077781|ref|YP_008376784.1|	-	2.5e-62	209.5	0.1	2.9e-62	209.4	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF99
Lactamase_B	PF00753.27	gi|529077783|ref|YP_008376786.1|	-	1.4e-08	35.0	10.3	6.1e-07	29.6	9.9	2.3	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|529077783|ref|YP_008376786.1|	-	0.00033	20.2	2.5	0.0012	18.4	2.6	1.9	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
DUF86	PF01934.17	gi|529077784|ref|YP_008376787.1|	-	2e-24	85.7	0.3	2.4e-24	85.5	0.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF86
NTase_sub_bind	PF08780.11	gi|529077784|ref|YP_008376787.1|	-	0.0068	16.4	0.3	0.0082	16.1	0.3	1.2	1	0	0	1	1	1	1	Nucleotidyltransferase	substrate	binding	protein	like
DUF2336	PF10098.9	gi|529077784|ref|YP_008376787.1|	-	0.012	15.2	0.3	0.035	13.6	0.2	1.6	1	1	0	1	1	1	0	Uncharacterised	protein	conserved	in	bacteria	(DUF2336)
DUF4258	PF14076.6	gi|529077784|ref|YP_008376787.1|	-	0.12	12.7	0.2	5.5	7.4	0.0	2.7	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4258)
Polbeta	PF18765.1	gi|529077785|ref|YP_008376788.1|	-	1.3e-12	47.6	0.1	1.9e-12	47.1	0.1	1.2	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
NTP_transf_2	PF01909.23	gi|529077785|ref|YP_008376788.1|	-	4.5e-06	26.9	1.1	6e-06	26.5	1.1	1.4	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
Seryl_tRNA_N	PF02403.22	gi|529077786|ref|YP_008376789.1|	-	7.4e-30	103.4	5.3	1.2e-29	102.7	5.3	1.3	1	0	0	1	1	1	1	Seryl-tRNA	synthetase	N-terminal	domain
tRNA-synt_2b	PF00587.25	gi|529077786|ref|YP_008376789.1|	-	3.6e-27	95.5	0.0	7.3e-27	94.5	0.0	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
tRNA-synt_His	PF13393.6	gi|529077786|ref|YP_008376789.1|	-	0.027	13.7	2.0	0.16	11.2	0.0	2.1	2	0	0	2	2	2	0	Histidyl-tRNA	synthetase
FapA	PF03961.13	gi|529077786|ref|YP_008376789.1|	-	0.03	12.9	1.4	0.043	12.4	1.4	1.1	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
DUF1771	PF08590.10	gi|529077786|ref|YP_008376789.1|	-	0.085	13.2	2.1	0.3	11.5	1.6	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1771)
Fer4_15	PF13459.6	gi|529077787|ref|YP_008376790.1|	-	0.00035	21.2	0.8	0.00067	20.3	0.3	1.8	1	1	1	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|529077787|ref|YP_008376790.1|	-	0.059	13.9	0.2	0.11	13.1	0.2	1.3	1	0	0	1	1	1	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Glycos_transf_3	PF00591.21	gi|529077788|ref|YP_008376791.1|	-	1.3e-31	110.1	0.0	2.2e-31	109.3	0.0	1.3	2	0	0	2	2	2	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.17	gi|529077788|ref|YP_008376791.1|	-	3.9e-07	29.8	0.1	1.1e-06	28.3	0.1	1.7	1	0	0	1	1	1	1	Glycosyl	transferase	family,	helical	bundle	domain
TP_methylase	PF00590.20	gi|529077789|ref|YP_008376792.1|	-	1.2e-49	169.2	5.2	1.5e-49	168.8	5.2	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
DUF4350	PF14258.6	gi|529077789|ref|YP_008376792.1|	-	0.0093	16.4	0.4	0.047	14.1	0.0	2.4	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF4350)
CbiX	PF01903.17	gi|529077790|ref|YP_008376793.1|	-	2.6e-36	124.2	0.0	1.2e-17	64.1	0.0	2.3	2	0	0	2	2	2	2	CbiX
DR2241	PF18069.1	gi|529077790|ref|YP_008376793.1|	-	2.2e-21	75.8	0.8	6.5e-21	74.3	0.8	1.8	1	0	0	1	1	1	1	DR2241	stabilising	domain
Fer4_23	PF18009.1	gi|529077790|ref|YP_008376793.1|	-	6e-20	71.5	0.1	1.1e-19	70.6	0.1	1.5	1	0	0	1	1	1	1	4Fe-4S	iron-sulfur	cluster	binding	domain
CbiK	PF06180.11	gi|529077790|ref|YP_008376793.1|	-	2.2e-06	27.2	0.0	0.00072	18.9	0.0	2.1	2	0	0	2	2	2	2	Cobalt	chelatase	(CbiK)
Ferrochelatase	PF00762.19	gi|529077790|ref|YP_008376793.1|	-	0.14	11.2	0.0	0.27	10.2	0.0	1.4	1	1	0	1	1	1	0	Ferrochelatase
BssS	PF13991.6	gi|529077791|ref|YP_008376794.1|	-	0.069	13.2	0.1	0.096	12.8	0.1	1.3	1	0	0	1	1	1	0	BssS	protein	family
NIR_SIR	PF01077.22	gi|529077792|ref|YP_008376795.1|	-	7.3e-42	142.6	0.0	5e-31	107.3	0.0	2.3	2	0	0	2	2	2	2	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.17	gi|529077792|ref|YP_008376795.1|	-	7.9e-35	118.5	0.2	1.9e-18	66.1	0.0	3.3	2	1	0	2	2	2	2	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
DUF2840	PF11000.8	gi|529077792|ref|YP_008376795.1|	-	0.18	11.6	0.0	0.39	10.5	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2840)
NAD_binding_7	PF13241.6	gi|529077796|ref|YP_008376799.1|	-	1e-21	77.3	0.0	2e-21	76.4	0.0	1.5	1	0	0	1	1	1	1	Putative	NAD(P)-binding
CysG_dimeriser	PF10414.9	gi|529077796|ref|YP_008376799.1|	-	2.9e-07	30.1	3.1	2.9e-07	30.1	3.1	1.8	2	0	0	2	2	2	1	Sirohaem	synthase	dimerisation	region
Sirohm_synth_M	PF14824.6	gi|529077796|ref|YP_008376799.1|	-	0.0015	17.9	0.0	0.0027	17.1	0.0	1.5	1	0	0	1	1	1	1	Sirohaem	biosynthesis	protein	central
RmlD_sub_bind	PF04321.17	gi|529077796|ref|YP_008376799.1|	-	0.082	12.0	0.1	0.11	11.5	0.1	1.3	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
E1-E2_ATPase	PF00122.20	gi|529077797|ref|YP_008376800.1|	-	3.5e-48	163.5	1.0	7.7e-48	162.4	1.0	1.6	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|529077797|ref|YP_008376800.1|	-	6.9e-47	160.4	7.4	6.9e-47	160.4	7.4	2.1	3	0	0	3	3	3	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|529077797|ref|YP_008376800.1|	-	1.3e-26	92.8	0.5	3e-13	50.0	0.0	3.2	3	0	0	3	3	3	2	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|529077797|ref|YP_008376800.1|	-	8.9e-08	32.2	1.3	0.00093	19.0	0.6	2.4	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|529077797|ref|YP_008376800.1|	-	5.3e-06	27.0	0.2	2.6e-05	24.7	0.2	2.2	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.6	gi|529077797|ref|YP_008376800.1|	-	0.00025	21.1	0.5	0.0025	17.9	0.0	3.0	4	0	0	4	4	4	1	Haloacid	dehalogenase-like	hydrolase
HTH_AsnC-type	PF13404.6	gi|529077798|ref|YP_008376801.1|	-	2.7e-14	52.7	0.2	2.7e-14	52.7	0.2	2.6	3	0	0	3	3	3	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|529077798|ref|YP_008376801.1|	-	4.9e-13	48.4	0.0	1.1e-12	47.3	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|529077798|ref|YP_008376801.1|	-	5.2e-07	29.6	0.0	1.1e-06	28.6	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|529077798|ref|YP_008376801.1|	-	2.5e-05	24.1	0.1	3.8e-05	23.5	0.1	1.3	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|529077798|ref|YP_008376801.1|	-	6e-05	22.8	0.0	8.7e-05	22.3	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
YHS	PF04945.13	gi|529077798|ref|YP_008376801.1|	-	0.00025	21.0	0.2	0.00044	20.3	0.2	1.3	1	0	0	1	1	1	1	YHS	domain
Arc_trans_TRASH	PF08394.10	gi|529077798|ref|YP_008376801.1|	-	0.00026	21.3	2.5	0.00037	20.8	2.5	1.2	1	0	0	1	1	1	1	Archaeal	TRASH	domain
MarR	PF01047.22	gi|529077798|ref|YP_008376801.1|	-	0.00031	20.6	0.0	0.00046	20.0	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|529077798|ref|YP_008376801.1|	-	0.0078	16.0	0.0	0.014	15.2	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
zf-FCS	PF06467.14	gi|529077798|ref|YP_008376801.1|	-	0.0091	15.9	2.5	0.0096	15.8	1.2	1.7	2	0	0	2	2	2	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
TrmB	PF01978.19	gi|529077798|ref|YP_008376801.1|	-	0.0097	15.8	0.0	0.018	14.9	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
LIM	PF00412.22	gi|529077798|ref|YP_008376801.1|	-	0.025	14.8	0.8	0.047	13.9	0.8	1.4	1	0	0	1	1	1	0	LIM	domain
ATPase-cat_bd	PF12156.8	gi|529077798|ref|YP_008376801.1|	-	0.048	14.4	1.8	0.09	13.5	1.8	1.4	1	0	0	1	1	1	0	Putative	metal-binding	domain	of	cation	transport	ATPase
HTH_34	PF13601.6	gi|529077798|ref|YP_008376801.1|	-	0.083	13.1	0.0	0.15	12.3	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
RHH_1	PF01402.21	gi|529077798|ref|YP_008376801.1|	-	0.11	12.5	0.6	6.1	6.9	0.0	2.5	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
DUF3330	PF11809.8	gi|529077798|ref|YP_008376801.1|	-	0.13	12.4	1.0	0.73	9.9	0.6	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3330)
Sigma70_r4	PF04545.16	gi|529077798|ref|YP_008376801.1|	-	0.18	11.4	0.8	0.32	10.6	0.0	1.8	2	0	0	2	2	2	0	Sigma-70,	region	4
HMA	PF00403.26	gi|529077799|ref|YP_008376802.1|	-	9e-19	67.7	0.4	9.9e-19	67.6	0.4	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
NAD_binding_7	PF13241.6	gi|529077799|ref|YP_008376802.1|	-	0.025	15.0	0.1	0.026	14.9	0.1	1.1	1	0	0	1	1	1	0	Putative	NAD(P)-binding
DUF2800	PF10926.8	gi|529077800|ref|YP_008376803.1|	-	2e-05	24.0	0.1	2.9e-05	23.5	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2800)
DivIC	PF04977.15	gi|529077800|ref|YP_008376803.1|	-	0.046	13.5	0.3	0.33	10.7	0.1	2.4	2	0	0	2	2	2	0	Septum	formation	initiator
DUF563	PF04577.14	gi|529077800|ref|YP_008376803.1|	-	0.065	13.4	0.0	0.11	12.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF563)
Arena_nucleocap	PF00843.17	gi|529077800|ref|YP_008376803.1|	-	0.068	12.1	1.2	0.11	11.4	1.2	1.3	1	0	0	1	1	1	0	Arenavirus	nucleocapsid	N-terminal	domain
Fzo_mitofusin	PF04799.13	gi|529077800|ref|YP_008376803.1|	-	0.2	11.2	0.6	0.41	10.2	0.2	1.6	2	0	0	2	2	2	0	fzo-like	conserved	region
XhlA	PF10779.9	gi|529077800|ref|YP_008376803.1|	-	2.4	8.4	4.2	1.7	8.9	0.7	2.6	2	1	1	3	3	3	0	Haemolysin	XhlA
DUF1998	PF09369.10	gi|529077801|ref|YP_008376804.1|	-	4.9e-18	65.7	0.1	9.3e-18	64.8	0.1	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1998)
SWIM	PF04434.17	gi|529077802|ref|YP_008376805.1|	-	2e-06	27.3	0.1	3.7e-06	26.5	0.1	1.4	1	0	0	1	1	1	1	SWIM	zinc	finger
Lsm_interact	PF05391.11	gi|529077802|ref|YP_008376805.1|	-	0.093	12.3	0.1	0.17	11.4	0.1	1.4	1	0	0	1	1	1	0	Lsm	interaction	motif
HTH_16	PF12645.7	gi|529077803|ref|YP_008376806.1|	-	0.094	12.8	0.7	0.16	12.0	0.1	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
ParE_toxin	PF05016.15	gi|529077804|ref|YP_008376807.1|	-	0.36	11.5	3.3	12	6.6	1.1	2.7	2	1	0	2	2	2	0	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
DUF3141	PF11339.8	gi|529077805|ref|YP_008376808.1|	-	0.0068	14.9	0.0	0.0093	14.4	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3141)
PRiA4_ORF3	PF07929.11	gi|529077806|ref|YP_008376809.1|	-	4.4e-05	23.3	0.0	6.4e-05	22.7	0.0	1.2	1	0	0	1	1	1	1	Plasmid	pRiA4b	ORF-3-like	protein
Calci_bind_CcbP	PF11535.8	gi|529077807|ref|YP_008376810.1|	-	5.6e-24	84.6	0.0	6.2e-24	84.5	0.0	1.0	1	0	0	1	1	1	1	Calcium	binding
DUF790	PF05626.11	gi|529077808|ref|YP_008376811.1|	-	5.6e-142	473.0	0.0	6.4e-142	472.9	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF790)
ERCC3_RAD25_C	PF16203.5	gi|529077809|ref|YP_008376812.1|	-	2.1e-23	82.8	0.2	3.3e-23	82.2	0.2	1.2	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
ResIII	PF04851.15	gi|529077809|ref|YP_008376812.1|	-	8.2e-21	74.7	0.0	2.7e-20	73.1	0.0	1.8	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|529077809|ref|YP_008376812.1|	-	4.7e-16	59.1	0.0	1.3e-15	57.7	0.0	1.8	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
XPB_DRD	PF18458.1	gi|529077809|ref|YP_008376812.1|	-	8.1e-14	51.2	0.6	3.3e-13	49.3	0.6	2.1	1	0	0	1	1	1	1	Xeroderma	pigmentosum	group	B	helicase	damage	recognition	domain
DEAD	PF00270.29	gi|529077809|ref|YP_008376812.1|	-	1.6e-06	28.0	0.0	4.9e-06	26.4	0.0	1.9	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
SWIM	PF04434.17	gi|529077810|ref|YP_008376813.1|	-	4.2e-06	26.3	0.4	9.4e-06	25.2	0.4	1.6	1	0	0	1	1	1	1	SWIM	zinc	finger
Suv3_N	PF18114.1	gi|529077810|ref|YP_008376813.1|	-	0.033	14.3	0.1	2.7	8.1	0.0	3.4	3	0	0	3	3	3	0	Suv3	helical	N-terminal	domain
DUF2274	PF10038.9	gi|529077810|ref|YP_008376813.1|	-	0.11	12.9	0.0	0.53	10.8	0.0	2.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2274)
DUF488	PF04343.13	gi|529077810|ref|YP_008376813.1|	-	0.48	11.0	0.0	0.48	11.0	0.0	2.9	3	1	1	4	4	4	0	Protein	of	unknown	function,	DUF488
TPR_14	PF13428.6	gi|529077810|ref|YP_008376813.1|	-	1.3	10.0	8.3	35	5.6	0.0	5.0	5	0	0	5	5	5	0	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|529077810|ref|YP_008376813.1|	-	5.8	7.2	5.8	4.8	7.5	0.1	3.7	4	0	0	4	4	4	0	Tetratricopeptide	repeat
ERCC4	PF02732.15	gi|529077811|ref|YP_008376814.1|	-	2.2e-06	28.0	0.0	2.5e-06	27.8	0.0	1.1	1	0	0	1	1	1	1	ERCC4	domain
Chlamy_scaf	PF09675.10	gi|529077813|ref|YP_008376816.1|	-	0.068	13.5	0.0	0.089	13.1	0.0	1.3	1	0	0	1	1	1	0	Chlamydia-phage	Chp2	scaffold	(Chlamy_scaf)
MC1	PF05854.11	gi|529077816|ref|YP_008376819.1|	-	1e-30	105.9	0.3	1.1e-30	105.7	0.3	1.0	1	0	0	1	1	1	1	Non-histone	chromosomal	protein	MC1
DUF4776	PF16003.5	gi|529077816|ref|YP_008376819.1|	-	0.0049	15.9	0.2	0.005	15.9	0.2	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4776)
SymE_toxin	PF08845.10	gi|529077817|ref|YP_008376820.1|	-	0.018	15.1	0.0	0.019	15.0	0.0	1.2	1	0	0	1	1	1	0	Toxin	SymE,	type	I	toxin-antitoxin	system
MazE_antitoxin	PF04014.18	gi|529077817|ref|YP_008376820.1|	-	0.042	13.8	0.2	0.06	13.3	0.2	1.3	1	0	0	1	1	1	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
DHO_dh	PF01180.21	gi|529077818|ref|YP_008376821.1|	-	7.3e-81	271.6	0.0	8.7e-81	271.3	0.0	1.1	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
NMO	PF03060.15	gi|529077818|ref|YP_008376821.1|	-	1.9e-05	24.2	0.2	5.2e-05	22.8	0.1	1.6	2	0	0	2	2	2	1	Nitronate	monooxygenase
tRNA_synthFbeta	PF17759.1	gi|529077820|ref|YP_008376823.1|	-	2e-42	145.1	0.0	3.3e-42	144.4	0.0	1.4	1	0	0	1	1	1	1	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
B5	PF03484.15	gi|529077820|ref|YP_008376823.1|	-	4.9e-17	62.0	0.3	4.1e-16	59.0	0.1	2.4	2	0	0	2	2	2	1	tRNA	synthetase	B5	domain
B3_4	PF03483.17	gi|529077820|ref|YP_008376823.1|	-	4.4e-11	42.8	0.0	7.1e-11	42.1	0.0	1.3	1	0	0	1	1	1	1	B3/4	domain
PhetRS_B1	PF18262.1	gi|529077820|ref|YP_008376823.1|	-	1e-07	32.0	0.2	0.00035	20.7	0.2	2.9	2	1	0	2	2	2	2	Phe-tRNA	synthetase	beta	subunit	B1	domain
tRNA-synt_2d	PF01409.20	gi|529077821|ref|YP_008376824.1|	-	4.3e-74	249.1	0.0	5.8e-74	248.7	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
MarR_2	PF12802.7	gi|529077821|ref|YP_008376824.1|	-	3.5e-05	23.6	2.5	0.00017	21.4	0.4	2.8	2	0	0	2	2	2	1	MarR	family
tRNA-synt_2	PF00152.20	gi|529077821|ref|YP_008376824.1|	-	0.00021	20.5	3.4	0.21	10.6	0.2	3.0	3	0	0	3	3	3	2	tRNA	synthetases	class	II	(D,	K	and	N)
DprA_WH	PF17782.1	gi|529077821|ref|YP_008376824.1|	-	0.0017	18.4	3.5	0.0017	18.4	3.5	2.3	2	0	0	2	2	2	1	DprA	winged	helix	domain
MarR	PF01047.22	gi|529077821|ref|YP_008376824.1|	-	0.0035	17.2	0.4	0.2	11.6	0.0	2.6	2	0	0	2	2	2	1	MarR	family
tRNA_synthFbeta	PF17759.1	gi|529077821|ref|YP_008376824.1|	-	0.0081	15.6	0.2	0.85	9.0	0.0	3.1	3	0	0	3	3	3	1	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
HTH_27	PF13463.6	gi|529077821|ref|YP_008376824.1|	-	0.0086	16.6	2.6	1.4	9.4	0.3	2.5	2	0	0	2	2	2	2	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|529077821|ref|YP_008376824.1|	-	0.04	13.5	0.0	0.073	12.6	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|529077821|ref|YP_008376824.1|	-	0.077	12.9	0.2	13	5.8	0.0	3.0	2	1	1	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.21	gi|529077821|ref|YP_008376824.1|	-	3.9	7.2	5.9	1.6	8.4	0.5	2.8	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	gntR	family
MatE	PF01554.18	gi|529077822|ref|YP_008376825.1|	-	7.1e-47	159.1	27.7	1.4e-27	96.3	7.4	2.6	2	1	0	2	2	2	2	MatE
Polysacc_synt_C	PF14667.6	gi|529077822|ref|YP_008376825.1|	-	1.6e-10	41.2	9.3	1.6e-10	41.2	9.3	4.8	4	1	1	5	5	5	2	Polysaccharide	biosynthesis	C-terminal	domain
MurJ	PF03023.14	gi|529077822|ref|YP_008376825.1|	-	7.9e-05	21.4	2.6	7.9e-05	21.4	2.6	2.2	2	0	0	2	2	2	1	Lipid	II	flippase	MurJ
tRNA-synt_1b	PF00579.25	gi|529077823|ref|YP_008376826.1|	-	1.4e-40	139.4	0.0	1.3e-23	83.8	0.0	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(W	and	Y)
tRNA_int_endo	PF01974.17	gi|529077824|ref|YP_008376827.1|	-	5.5e-33	112.9	0.4	7.4e-26	90.0	0.0	3.3	2	1	0	2	2	2	2	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
tRNA_int_endo_N	PF02778.14	gi|529077824|ref|YP_008376827.1|	-	4.6e-27	93.5	0.1	1e-12	47.5	0.0	2.5	2	0	0	2	2	2	2	tRNA	intron	endonuclease,	N-terminal	domain
NucS	PF01939.16	gi|529077825|ref|YP_008376828.1|	-	5.7e-07	29.1	0.0	7.4e-07	28.7	0.0	1.1	1	0	0	1	1	1	1	Endonuclease	NucS
zf-C4_Topoisom	PF01396.19	gi|529077825|ref|YP_008376828.1|	-	9e-07	28.6	10.2	1.7e-05	24.5	0.6	3.2	3	0	0	3	3	3	2	Topoisomerase	DNA	binding	C4	zinc	finger
zinc-ribbons_6	PF07191.12	gi|529077825|ref|YP_008376828.1|	-	0.0063	16.5	3.7	0.67	10.0	0.6	2.5	1	1	1	2	2	2	2	zinc-ribbons
HypA	PF01155.19	gi|529077825|ref|YP_008376828.1|	-	0.062	13.3	4.4	0.92	9.5	1.2	3.2	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Auto_anti-p27	PF06677.12	gi|529077825|ref|YP_008376828.1|	-	0.086	13.0	15.2	1.6	9.0	1.3	4.3	4	0	0	4	4	4	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-TFIIB	PF13453.6	gi|529077825|ref|YP_008376828.1|	-	0.1	11.9	5.6	0.28	10.6	0.1	2.9	2	1	1	3	3	3	0	Transcription	factor	zinc-finger
zf_Rg	PF17915.1	gi|529077825|ref|YP_008376828.1|	-	0.17	11.3	0.2	0.17	11.3	0.2	2.8	2	1	0	2	2	2	0	Reverse	gyrase	zinc	finger
Zn-ribbon_8	PF09723.10	gi|529077825|ref|YP_008376828.1|	-	0.2	11.8	7.1	1.5	9.0	0.1	3.5	3	0	0	3	3	3	0	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|529077825|ref|YP_008376828.1|	-	0.25	11.3	3.3	6.5	6.8	0.5	2.6	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
DUF1272	PF06906.11	gi|529077825|ref|YP_008376828.1|	-	2.4	8.3	10.5	0.55	10.4	1.6	2.8	3	0	0	3	3	2	0	Protein	of	unknown	function	(DUF1272)
Rubredoxin_2	PF18073.1	gi|529077825|ref|YP_008376828.1|	-	9.2	6.1	8.8	7.5	6.4	0.2	3.3	3	0	0	3	3	3	0	Rubredoxin	metal	binding	domain
SNase	PF00565.17	gi|529077826|ref|YP_008376829.1|	-	3.9e-15	56.2	0.0	5.7e-15	55.7	0.0	1.2	1	0	0	1	1	1	1	Staphylococcal	nuclease	homologue
LOR	PF04525.12	gi|529077827|ref|YP_008376830.1|	-	0.00032	20.3	0.2	0.049	13.2	0.0	3.0	2	1	0	3	3	3	2	LURP-one-related
HAD_2	PF13419.6	gi|529077828|ref|YP_008376831.1|	-	1.5e-22	80.5	0.0	2.3e-22	80.0	0.0	1.3	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|529077828|ref|YP_008376831.1|	-	3.7e-15	56.8	0.5	6.4e-14	52.7	0.5	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|529077828|ref|YP_008376831.1|	-	1.5e-09	37.8	0.8	3.6e-09	36.6	0.4	1.9	3	0	0	3	3	3	1	HAD-hyrolase-like
HAD	PF12710.7	gi|529077828|ref|YP_008376831.1|	-	3.1e-08	34.3	0.1	3.9e-08	33.9	0.1	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
FAD_binding_4	PF01565.23	gi|529077828|ref|YP_008376831.1|	-	0.052	13.3	0.0	0.079	12.7	0.0	1.4	1	0	0	1	1	1	0	FAD	binding	domain
Hydrolase_6	PF13344.6	gi|529077828|ref|YP_008376831.1|	-	0.069	13.3	0.0	0.37	10.9	0.0	2.2	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
Cyclophil_like	PF04126.13	gi|529077829|ref|YP_008376832.1|	-	5.3e-26	90.8	0.0	5.9e-26	90.6	0.0	1.0	1	0	0	1	1	1	1	Cyclophilin-like
Cyclophil_like2	PF18050.1	gi|529077829|ref|YP_008376832.1|	-	3.5e-05	23.7	0.0	4.9e-05	23.3	0.0	1.3	1	1	0	1	1	1	1	Cyclophilin-like	family
DEAD	PF00270.29	gi|529077830|ref|YP_008376833.1|	-	4.3e-24	85.2	0.0	2.1e-23	83.0	0.0	2.1	3	0	0	3	3	3	1	DEAD/DEAH	box	helicase
Sec63	PF02889.16	gi|529077830|ref|YP_008376833.1|	-	1.9e-20	73.1	0.0	2.7e-20	72.6	0.0	1.1	1	0	0	1	1	1	1	Sec63	Brl	domain
ResIII	PF04851.15	gi|529077830|ref|YP_008376833.1|	-	5.5e-11	42.8	0.0	1e-10	41.9	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|529077830|ref|YP_008376833.1|	-	6.5e-07	29.7	0.0	3.5e-06	27.3	0.0	2.2	1	1	0	1	1	1	1	Helicase	conserved	C-terminal	domain
HHH_5	PF14520.6	gi|529077830|ref|YP_008376833.1|	-	0.00041	20.9	1.0	0.0016	19.0	1.0	2.0	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
T2SSE	PF00437.20	gi|529077830|ref|YP_008376833.1|	-	0.01	14.9	0.0	0.038	13.0	0.0	1.9	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
DNA_pol_lambd_f	PF10391.9	gi|529077830|ref|YP_008376833.1|	-	0.2	11.5	0.4	0.79	9.6	0.1	2.2	2	0	0	2	2	2	0	Fingers	domain	of	DNA	polymerase	lambda
Usp	PF00582.26	gi|529077831|ref|YP_008376834.1|	-	4.5e-64	215.2	10.1	3e-32	112.0	2.9	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
AP_endonuc_2	PF01261.24	gi|529077831|ref|YP_008376834.1|	-	0.0046	16.4	0.4	0.069	12.6	0.1	2.1	2	0	0	2	2	2	1	Xylose	isomerase-like	TIM	barrel
Hjc	PF01870.18	gi|529077832|ref|YP_008376835.1|	-	1.3e-29	102.0	0.0	1.8e-29	101.5	0.0	1.2	1	0	0	1	1	1	1	Archaeal	holliday	junction	resolvase	(hjc)
DNA_primase_lrg	PF04104.14	gi|529077834|ref|YP_008376837.1|	-	3.6e-34	118.4	0.0	9.4e-34	117.0	0.0	1.6	1	1	0	1	1	1	1	Eukaryotic	and	archaeal	DNA	primase,	large	subunit
Ploopntkinase1	PF18748.1	gi|529077834|ref|YP_008376837.1|	-	0.027	14.0	0.0	0.043	13.3	0.0	1.2	1	0	0	1	1	1	0	P-loop	Nucleotide	Kinase1
DUF3021	PF11457.8	gi|529077835|ref|YP_008376838.1|	-	0.22	11.8	3.3	0.29	11.5	3.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3021)
DUF3185	PF11381.8	gi|529077835|ref|YP_008376838.1|	-	0.57	10.2	7.6	0.5	10.4	0.5	3.4	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF3185)
Cation_ATPase_C	PF00689.21	gi|529077835|ref|YP_008376838.1|	-	2.7	7.6	7.3	20	4.8	7.4	2.0	1	1	0	1	1	1	0	Cation	transporting	ATPase,	C-terminus
PCNA_N	PF00705.18	gi|529077836|ref|YP_008376839.1|	-	4.2e-10	39.4	0.1	8.2e-10	38.5	0.1	1.5	1	0	0	1	1	1	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
PCNA_C	PF02747.15	gi|529077836|ref|YP_008376839.1|	-	2.4e-06	27.7	0.0	4.2e-05	23.7	0.0	2.3	2	1	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
Rad9	PF04139.13	gi|529077836|ref|YP_008376839.1|	-	0.17	11.3	0.0	0.27	10.6	0.0	1.3	1	0	0	1	1	1	0	Rad9
Abhydrolase_6	PF12697.7	gi|529077837|ref|YP_008376840.1|	-	1.6e-19	71.4	4.4	2e-19	71.1	4.4	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|529077837|ref|YP_008376840.1|	-	2.4e-18	66.7	0.0	2.4e-15	56.9	0.0	2.1	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|529077837|ref|YP_008376840.1|	-	3.4e-13	49.4	0.0	1.3e-12	47.5	0.0	1.8	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Ndr	PF03096.14	gi|529077837|ref|YP_008376840.1|	-	0.017	13.8	0.0	0.023	13.4	0.0	1.2	1	0	0	1	1	1	0	Ndr	family
HisKA	PF00512.25	gi|529077838|ref|YP_008376841.1|	-	1.1e-14	54.2	1.2	7.7e-14	51.5	0.4	2.4	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c	PF02518.26	gi|529077838|ref|YP_008376841.1|	-	2.8e-14	53.6	0.0	4.8e-14	52.8	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.10	gi|529077838|ref|YP_008376841.1|	-	4.7e-05	23.6	0.4	0.00063	20.0	0.1	2.7	2	1	1	3	3	3	1	PAS	fold
HATPase_c_3	PF13589.6	gi|529077838|ref|YP_008376841.1|	-	0.033	14.0	0.0	0.079	12.8	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_8	PF13188.7	gi|529077838|ref|YP_008376841.1|	-	0.062	13.3	0.4	0.23	11.6	0.0	2.2	2	0	0	2	2	2	0	PAS	domain
TetR_C_24	PF17932.1	gi|529077838|ref|YP_008376841.1|	-	0.15	12.3	0.3	14	6.0	0.1	2.5	1	1	1	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
DUF4307	PF14155.6	gi|529077839|ref|YP_008376842.1|	-	0.017	15.0	0.1	0.032	14.1	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4307)
DUF3775	PF12616.8	gi|529077839|ref|YP_008376842.1|	-	0.17	11.9	0.0	0.27	11.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3775)
DUF1508	PF07411.12	gi|529077841|ref|YP_008376844.1|	-	4.8e-71	234.4	6.7	1.1e-12	47.6	0.0	12.4	12	0	0	12	12	12	12	Domain	of	unknown	function	(DUF1508)
DDE_Tnp_IS240	PF13610.6	gi|529077841|ref|YP_008376844.1|	-	0.0021	18.3	2.1	18	5.6	0.0	5.3	6	0	0	6	6	6	2	DDE	domain
SPOR	PF05036.13	gi|529077841|ref|YP_008376844.1|	-	0.0092	16.3	2.6	24	5.4	0.1	4.8	5	0	0	5	5	5	1	Sporulation	related	domain
Robl_LC7	PF03259.17	gi|529077841|ref|YP_008376844.1|	-	0.026	14.3	1.0	4.1	7.3	0.0	4.1	5	0	0	5	5	5	0	Roadblock/LC7	domain
dCache_1	PF02743.18	gi|529077841|ref|YP_008376844.1|	-	0.073	12.9	0.0	9	6.0	0.0	3.5	3	1	0	3	3	3	0	Cache	domain
Dodecin	PF07311.12	gi|529077841|ref|YP_008376844.1|	-	0.16	12.2	5.4	0.22	11.8	0.3	3.6	3	1	1	4	4	4	0	Dodecin
tRNA-synt_1	PF00133.22	gi|529077842|ref|YP_008376845.1|	-	3.1e-69	233.8	5.6	3.6e-26	91.6	0.1	4.8	1	1	3	4	4	4	4	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1_2	PF13603.6	gi|529077842|ref|YP_008376845.1|	-	1.9e-59	200.3	0.1	1.9e-59	200.3	0.1	1.6	2	0	0	2	2	2	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1g	PF09334.11	gi|529077842|ref|YP_008376845.1|	-	3.3e-34	118.3	0.0	1.5e-22	79.9	0.0	4.2	3	1	1	4	4	4	3	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.13	gi|529077842|ref|YP_008376845.1|	-	1.3e-13	51.2	0.0	2.5e-13	50.3	0.0	1.5	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
IBR	PF01485.21	gi|529077842|ref|YP_008376845.1|	-	0.0013	18.9	0.9	0.19	11.9	0.2	2.4	2	0	0	2	2	2	1	IBR	domain,	a	half	RING-finger	domain
tRNA-synt_1f	PF01921.18	gi|529077842|ref|YP_008376845.1|	-	0.0034	16.4	0.0	0.44	9.4	0.0	2.4	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
DZR	PF12773.7	gi|529077842|ref|YP_008376845.1|	-	0.0071	16.3	2.8	1.8	8.6	0.5	2.4	2	0	0	2	2	2	2	Double	zinc	ribbon
DNA_ligase_ZBD	PF03119.16	gi|529077842|ref|YP_008376845.1|	-	0.0074	16.3	6.9	0.26	11.3	0.0	2.6	2	0	0	2	2	2	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
tRNA-synt_1e	PF01406.19	gi|529077842|ref|YP_008376845.1|	-	0.028	13.8	0.0	2.1	7.6	0.0	2.3	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(C)	catalytic	domain
Lar_restr_allev	PF14354.6	gi|529077842|ref|YP_008376845.1|	-	0.05	14.0	4.0	4.4	7.7	0.0	3.4	2	1	1	3	3	3	0	Restriction	alleviation	protein	Lar
zf-ribbon_3	PF13248.6	gi|529077842|ref|YP_008376845.1|	-	0.23	10.9	8.0	6.7	6.3	0.1	4.0	3	1	1	4	4	4	0	zinc-ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|529077842|ref|YP_008376845.1|	-	0.24	11.2	0.2	1	9.2	0.0	2.1	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
TF_Zn_Ribbon	PF08271.12	gi|529077842|ref|YP_008376845.1|	-	3.3	7.3	11.3	4	7.0	0.2	3.6	3	0	0	3	3	3	0	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.10	gi|529077842|ref|YP_008376845.1|	-	8	6.7	9.2	1.6	8.9	0.1	3.3	3	1	1	4	4	4	0	Zinc	ribbon	domain
Spore_YtfJ	PF09579.10	gi|529077843|ref|YP_008376846.1|	-	8.4e-07	29.1	3.3	1e-06	28.8	3.3	1.2	1	0	0	1	1	1	1	Sporulation	protein	YtfJ	(Spore_YtfJ)
RHH_1	PF01402.21	gi|529077845|ref|YP_008376848.1|	-	0.00014	21.6	1.8	0.00028	20.7	0.3	2.1	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
CopG_antitoxin	PF12441.8	gi|529077845|ref|YP_008376848.1|	-	0.011	16.3	0.0	0.021	15.3	0.0	1.5	1	0	0	1	1	1	0	CopG	antitoxin	of	type	II	toxin-antitoxin	system
DUF3562	PF12085.8	gi|529077845|ref|YP_008376848.1|	-	0.029	14.0	0.0	0.054	13.1	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3562)
RasGAP_C	PF03836.15	gi|529077845|ref|YP_008376848.1|	-	0.063	13.4	0.0	0.1	12.7	0.0	1.4	1	0	0	1	1	1	0	RasGAP	C-terminus
UPF0449	PF15136.6	gi|529077845|ref|YP_008376848.1|	-	0.083	13.4	0.7	0.13	12.8	0.7	1.5	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0449
Med8	PF10232.9	gi|529077845|ref|YP_008376848.1|	-	0.25	10.9	1.8	0.16	11.6	0.5	1.3	2	0	0	2	2	2	0	Mediator	of	RNA	polymerase	II	transcription	complex	subunit	8
RHH_7	PF16777.5	gi|529077845|ref|YP_008376848.1|	-	0.26	11.7	1.6	0.32	11.4	0.1	1.9	2	0	0	2	2	2	0	Transcriptional	regulator,	RHH-like,	CopG
TMEM171	PF15471.6	gi|529077846|ref|YP_008376849.1|	-	0.029	13.3	0.2	0.038	13.0	0.2	1.1	1	0	0	1	1	1	0	Transmembrane	protein	family	171
tRNA_anti-codon	PF01336.25	gi|529077847|ref|YP_008376850.1|	-	0.058	13.4	0.2	0.75	9.8	0.0	2.5	2	0	0	2	2	2	0	OB-fold	nucleic	acid	binding	domain
ABC_tran	PF00005.27	gi|529077849|ref|YP_008376852.1|	-	2e-25	89.9	0.0	2.6e-25	89.6	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529077849|ref|YP_008376852.1|	-	1.2e-15	58.1	0.2	4.3e-10	39.9	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|529077849|ref|YP_008376852.1|	-	0.00039	20.2	0.0	0.15	11.7	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.6	gi|529077849|ref|YP_008376852.1|	-	0.026	15.0	0.1	0.048	14.2	0.0	1.4	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|529077849|ref|YP_008376852.1|	-	0.066	12.9	0.2	0.16	11.7	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|529077849|ref|YP_008376852.1|	-	0.1	13.0	0.5	1.1	9.6	0.5	2.1	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SbcCD_C	PF13558.6	gi|529077849|ref|YP_008376852.1|	-	0.14	12.4	0.0	0.38	11.0	0.0	1.8	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_13	PF13166.6	gi|529077849|ref|YP_008376852.1|	-	0.23	10.1	0.0	1.5	7.4	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
DUF3021	PF11457.8	gi|529077850|ref|YP_008376853.1|	-	0.011	16.0	1.5	0.011	16.0	1.5	2.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3021)
Innexin	PF00876.18	gi|529077851|ref|YP_008376854.1|	-	0.25	10.6	2.6	0.32	10.3	2.6	1.1	1	0	0	1	1	1	0	Innexin
FixH	PF05751.11	gi|529077851|ref|YP_008376854.1|	-	2.4	8.2	0.0	2.4	8.2	0.0	2.0	2	0	0	2	2	2	0	FixH
adh_short_C2	PF13561.6	gi|529077852|ref|YP_008376855.1|	-	7e-53	179.6	0.1	1e-52	179.0	0.1	1.2	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|529077852|ref|YP_008376855.1|	-	3.7e-40	137.5	0.0	4.6e-40	137.2	0.0	1.0	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|529077852|ref|YP_008376855.1|	-	7.5e-09	35.7	0.1	1.2e-08	35.1	0.1	1.2	1	0	0	1	1	1	1	KR	domain
NAD_binding_10	PF13460.6	gi|529077852|ref|YP_008376855.1|	-	0.0097	15.8	0.4	0.014	15.3	0.4	1.4	1	1	0	1	1	1	1	NAD(P)H-binding
ADH_zinc_N	PF00107.26	gi|529077852|ref|YP_008376855.1|	-	0.076	13.0	0.3	0.16	11.9	0.3	1.6	1	1	0	1	1	1	0	Zinc-binding	dehydrogenase
Epimerase	PF01370.21	gi|529077852|ref|YP_008376855.1|	-	0.09	12.2	0.0	0.14	11.6	0.0	1.3	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
TRAM	PF01938.20	gi|529077853|ref|YP_008376856.1|	-	4.7e-10	39.3	0.5	6.5e-10	38.9	0.5	1.2	1	0	0	1	1	1	1	TRAM	domain
LKAAEAR	PF15478.6	gi|529077853|ref|YP_008376856.1|	-	0.014	15.6	0.0	0.021	15.1	0.0	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	with	LKAAEAR	motif
TFB6	PF17110.5	gi|529077853|ref|YP_008376856.1|	-	0.23	11.2	2.6	0.33	10.7	2.6	1.1	1	0	0	1	1	1	0	Subunit	11	of	the	general	transcription	factor	TFIIH
CDC45	PF02724.14	gi|529077853|ref|YP_008376856.1|	-	0.33	9.2	3.0	0.35	9.1	3.0	1.0	1	0	0	1	1	1	0	CDC45-like	protein
DNA_pol_phi	PF04931.13	gi|529077853|ref|YP_008376856.1|	-	1.3	7.0	9.8	1.5	6.9	9.8	1.0	1	0	0	1	1	1	0	DNA	polymerase	phi
DUF4265	PF14085.6	gi|529077854|ref|YP_008376857.1|	-	0.0059	16.6	0.0	0.0071	16.3	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4265)
CspB_prodomain	PF18425.1	gi|529077854|ref|YP_008376857.1|	-	0.079	13.0	0.0	0.098	12.7	0.0	1.1	1	0	0	1	1	1	0	Csp	protease	B	prodomain
PolC_DP2	PF03833.13	gi|529077856|ref|YP_008376859.1|	-	0	1328.7	0.0	0	1327.7	0.0	1.4	2	0	0	2	2	2	1	DNA	polymerase	II	large	subunit	DP2
zinc-ribbons_6	PF07191.12	gi|529077856|ref|YP_008376859.1|	-	0.0019	18.2	9.6	0.092	12.7	6.0	2.5	2	0	0	2	2	2	2	zinc-ribbons
HypA	PF01155.19	gi|529077856|ref|YP_008376859.1|	-	0.045	13.8	18.5	1	9.4	1.9	3.5	2	1	1	3	3	3	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|529077856|ref|YP_008376859.1|	-	0.11	12.6	18.4	1.5	8.9	0.4	3.1	2	1	0	2	2	2	0	Double	zinc	ribbon
zf-CHY	PF05495.12	gi|529077856|ref|YP_008376859.1|	-	0.39	11.2	5.7	1.3	9.5	2.0	2.4	2	0	0	2	2	2	0	CHY	zinc	finger
Zn-ribbon_8	PF09723.10	gi|529077856|ref|YP_008376859.1|	-	1.5	9.0	24.2	1.7	8.9	1.1	3.7	2	1	1	3	3	3	0	Zinc	ribbon	domain
PHF5	PF03660.14	gi|529077856|ref|YP_008376859.1|	-	1.8	8.8	7.6	0.72	10.1	2.9	2.2	2	0	0	2	2	2	0	PHF5-like	protein
DUF296	PF03479.15	gi|529077857|ref|YP_008376860.1|	-	1.1e-17	64.3	0.0	1.3e-17	64.1	0.0	1.1	1	0	0	1	1	1	1	Plants	and	Prokaryotes	Conserved	(PCC)	domain
DUF3961	PF13106.6	gi|529077857|ref|YP_008376860.1|	-	0.094	12.4	0.1	0.16	11.6	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3961)
DUF2072	PF09845.9	gi|529077859|ref|YP_008376862.1|	-	1.7e-34	118.9	0.2	1e-16	61.4	0.0	2.2	2	0	0	2	2	2	2	Zn-ribbon	containing	protein
TF_Zn_Ribbon	PF08271.12	gi|529077859|ref|YP_008376862.1|	-	0.0032	16.9	1.7	0.55	9.8	0.2	2.6	2	0	0	2	2	2	2	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.10	gi|529077859|ref|YP_008376862.1|	-	0.0042	17.2	3.4	0.009	16.1	3.4	1.5	1	0	0	1	1	1	1	Zinc	ribbon	domain
DUF1451	PF07295.11	gi|529077859|ref|YP_008376862.1|	-	0.036	14.1	2.1	0.069	13.2	1.5	1.7	2	0	0	2	2	2	0	Zinc-ribbon	containing	domain
HypA	PF01155.19	gi|529077859|ref|YP_008376862.1|	-	0.075	13.1	0.7	0.12	12.4	0.7	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF2073	PF09846.9	gi|529077860|ref|YP_008376863.1|	-	7.4e-47	157.6	1.5	9.4e-47	157.2	1.5	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2073)
MMR_HSR1	PF01926.23	gi|529077861|ref|YP_008376864.1|	-	1.2e-14	54.4	0.0	1.6e-14	54.0	0.0	1.2	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
GTP_EFTU	PF00009.27	gi|529077861|ref|YP_008376864.1|	-	1.9e-11	43.9	0.1	8.2e-07	28.8	0.1	3.4	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
Arf	PF00025.21	gi|529077861|ref|YP_008376864.1|	-	7e-08	32.1	0.0	7.3e-05	22.3	0.0	2.7	2	1	1	3	3	3	2	ADP-ribosylation	factor	family
FeoB_N	PF02421.18	gi|529077861|ref|YP_008376864.1|	-	2.6e-05	23.8	0.1	0.00022	20.8	0.1	2.3	1	1	0	1	1	1	1	Ferrous	iron	transport	protein	B
RsgA_GTPase	PF03193.16	gi|529077861|ref|YP_008376864.1|	-	9.6e-05	22.3	0.0	0.46	10.4	0.0	2.2	2	0	0	2	2	2	2	RsgA	GTPase
Roc	PF08477.13	gi|529077861|ref|YP_008376864.1|	-	0.00045	20.4	0.0	0.0073	16.5	0.0	2.1	1	1	0	2	2	2	1	Ras	of	Complex,	Roc,	domain	of	DAPkinase
Septin	PF00735.18	gi|529077861|ref|YP_008376864.1|	-	0.00048	19.5	0.0	0.00091	18.6	0.0	1.4	2	0	0	2	2	2	1	Septin
MMR_HSR1_Xtn	PF16897.5	gi|529077861|ref|YP_008376864.1|	-	0.00058	19.9	0.0	0.001	19.0	0.0	1.4	1	0	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
AAA_28	PF13521.6	gi|529077861|ref|YP_008376864.1|	-	0.00089	19.5	0.1	0.015	15.5	0.1	2.2	1	1	0	1	1	1	1	AAA	domain
SRPRB	PF09439.10	gi|529077861|ref|YP_008376864.1|	-	0.0014	18.1	0.0	0.2	11.0	0.0	2.2	2	0	0	2	2	2	1	Signal	recognition	particle	receptor	beta	subunit
AAA_24	PF13479.6	gi|529077861|ref|YP_008376864.1|	-	0.0021	17.8	0.1	0.0043	16.8	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|529077861|ref|YP_008376864.1|	-	0.0035	17.9	0.0	0.012	16.1	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|529077861|ref|YP_008376864.1|	-	0.0038	17.7	0.0	0.025	15.0	0.0	2.1	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NB-ARC	PF00931.22	gi|529077861|ref|YP_008376864.1|	-	0.0045	16.2	0.0	0.007	15.6	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
Dynamin_N	PF00350.23	gi|529077861|ref|YP_008376864.1|	-	0.011	15.7	0.0	2.5	8.1	0.1	2.3	1	1	1	2	2	2	0	Dynamin	family
AAA_16	PF13191.6	gi|529077861|ref|YP_008376864.1|	-	0.015	15.7	0.0	0.029	14.8	0.0	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
RNA_helicase	PF00910.22	gi|529077861|ref|YP_008376864.1|	-	0.015	15.7	0.0	0.029	14.7	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
cobW	PF02492.19	gi|529077861|ref|YP_008376864.1|	-	0.017	14.7	0.0	5.2	6.6	0.0	2.3	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
ATPase_2	PF01637.18	gi|529077861|ref|YP_008376864.1|	-	0.022	14.7	0.0	0.032	14.1	0.0	1.7	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
RuvB_N	PF05496.12	gi|529077861|ref|YP_008376864.1|	-	0.043	13.5	0.0	0.091	12.5	0.0	1.5	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
ABC_tran	PF00005.27	gi|529077861|ref|YP_008376864.1|	-	0.058	13.9	0.0	0.11	13.0	0.0	1.4	1	1	0	1	1	1	0	ABC	transporter
AAA_25	PF13481.6	gi|529077861|ref|YP_008376864.1|	-	0.071	12.7	0.2	0.16	11.5	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|529077861|ref|YP_008376864.1|	-	0.077	12.9	0.0	0.14	12.1	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
Parvo_NS1	PF01057.17	gi|529077861|ref|YP_008376864.1|	-	0.16	11.0	0.0	0.27	10.3	0.0	1.3	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
AAA_22	PF13401.6	gi|529077861|ref|YP_008376864.1|	-	0.17	12.1	0.0	0.36	11.1	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
Cdc6_C	PF09079.11	gi|529077862|ref|YP_008376865.1|	-	1.3e-24	85.9	0.1	3.2e-24	84.7	0.1	1.7	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_16	PF13191.6	gi|529077862|ref|YP_008376865.1|	-	4.8e-11	43.3	2.8	6.7e-11	42.9	0.0	2.4	3	0	0	3	3	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|529077862|ref|YP_008376865.1|	-	2.6e-09	37.6	0.0	0.0018	18.7	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|529077862|ref|YP_008376865.1|	-	5.5e-09	36.4	0.3	1.5e-07	31.8	0.3	2.5	1	1	0	1	1	1	1	AAA	domain
TniB	PF05621.11	gi|529077862|ref|YP_008376865.1|	-	0.00057	19.3	0.7	0.013	14.9	0.0	2.5	3	0	0	3	3	3	1	Bacterial	TniB	protein
ATPase_2	PF01637.18	gi|529077862|ref|YP_008376865.1|	-	0.0008	19.4	0.1	0.0021	18.0	0.1	1.7	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
Sigma54_activat	PF00158.26	gi|529077862|ref|YP_008376865.1|	-	0.0017	18.1	0.0	0.004	16.9	0.0	1.5	1	0	0	1	1	1	1	Sigma-54	interaction	domain
AAA_2	PF07724.14	gi|529077862|ref|YP_008376865.1|	-	0.0018	18.4	0.0	0.012	15.8	0.0	2.1	1	1	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
DUF815	PF05673.13	gi|529077862|ref|YP_008376865.1|	-	0.0029	16.8	0.0	0.0077	15.4	0.0	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
RuvB_N	PF05496.12	gi|529077862|ref|YP_008376865.1|	-	0.0084	15.9	0.0	0.028	14.2	0.0	1.9	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
T2SSE	PF00437.20	gi|529077862|ref|YP_008376865.1|	-	0.012	14.7	0.0	0.022	13.8	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_18	PF13238.6	gi|529077862|ref|YP_008376865.1|	-	0.024	15.2	0.0	0.06	13.9	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|529077862|ref|YP_008376865.1|	-	0.024	15.1	0.0	0.069	13.7	0.0	1.9	1	1	0	1	1	1	0	ABC	transporter
NB-ARC	PF00931.22	gi|529077862|ref|YP_008376865.1|	-	0.074	12.2	0.0	0.13	11.5	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
MutS_III	PF05192.18	gi|529077862|ref|YP_008376865.1|	-	0.08	13.2	2.2	0.15	12.2	1.8	1.8	1	1	0	1	1	1	0	MutS	domain	III
FtsK_SpoIIIE	PF01580.18	gi|529077862|ref|YP_008376865.1|	-	0.089	12.1	0.1	1.3	8.3	0.0	2.3	2	1	0	2	2	2	0	FtsK/SpoIIIE	family
AAA_assoc_2	PF16193.5	gi|529077862|ref|YP_008376865.1|	-	0.12	12.7	0.2	0.5	10.7	0.2	2.0	1	0	0	1	1	1	0	AAA	C-terminal	domain
AAA_lid_10	PF17872.1	gi|529077862|ref|YP_008376865.1|	-	0.13	12.4	0.0	0.76	9.9	0.0	2.1	2	0	0	2	2	2	0	AAA	lid	domain
AAA_7	PF12775.7	gi|529077862|ref|YP_008376865.1|	-	0.14	11.7	0.0	0.23	11.0	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_24	PF13479.6	gi|529077862|ref|YP_008376865.1|	-	0.15	11.8	0.1	0.42	10.3	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
DEAD	PF00270.29	gi|529077862|ref|YP_008376865.1|	-	0.34	10.7	3.5	4.7	7.0	1.8	2.7	2	1	0	2	2	2	0	DEAD/DEAH	box	helicase
Nnf1	PF03980.14	gi|529077862|ref|YP_008376865.1|	-	0.72	10.3	6.0	13	6.2	0.8	3.4	4	0	0	4	4	3	0	Nnf1
Peptidase_S24	PF00717.23	gi|529077863|ref|YP_008376866.1|	-	0.0027	17.6	0.1	0.0064	16.4	0.1	1.6	1	1	0	1	1	1	1	Peptidase	S24-like
DNA_pol_E_B	PF04042.16	gi|529077864|ref|YP_008376867.1|	-	2.5e-13	49.9	0.0	3.8e-13	49.3	0.0	1.2	1	0	0	1	1	1	1	DNA	polymerase	alpha/epsilon	subunit	B
Metallophos_2	PF12850.7	gi|529077864|ref|YP_008376867.1|	-	4.2e-09	36.8	9.0	5.3e-09	36.5	7.2	2.0	2	1	0	2	2	2	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|529077864|ref|YP_008376867.1|	-	6.2e-09	36.6	2.1	2e-08	35.0	2.1	1.9	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Cys_Met_Meta_PP	PF01053.20	gi|529077865|ref|YP_008376868.1|	-	2.6e-137	457.4	0.0	2.9e-137	457.3	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_1_2	PF00155.21	gi|529077865|ref|YP_008376868.1|	-	6.2e-09	35.5	0.0	8.8e-09	35.0	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|529077865|ref|YP_008376868.1|	-	4.2e-08	32.9	0.2	1.6e-07	31.0	0.1	1.8	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_5	PF00266.19	gi|529077865|ref|YP_008376868.1|	-	1.4e-06	27.6	0.0	2.3e-06	26.8	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
SepSecS	PF05889.13	gi|529077865|ref|YP_008376868.1|	-	0.0098	14.6	0.0	0.015	14.0	0.0	1.2	1	0	0	1	1	1	1	O-phosphoseryl-tRNA(Sec)	selenium	transferase,	SepSecS
TPP_enzyme_N	PF02776.18	gi|529077865|ref|YP_008376868.1|	-	0.015	14.9	1.0	3	7.4	0.1	3.0	3	0	0	3	3	3	0	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Beta_elim_lyase	PF01212.21	gi|529077865|ref|YP_008376868.1|	-	0.026	13.8	0.0	0.053	12.8	0.0	1.6	1	1	0	1	1	1	0	Beta-eliminating	lyase
IstB_IS21_ATP	PF08483.11	gi|529077865|ref|YP_008376868.1|	-	0.038	13.9	0.0	0.088	12.7	0.0	1.7	1	0	0	1	1	1	0	IstB-like	ATP	binding	N-terminal
Glyco_hydro_3	PF00933.21	gi|529077866|ref|YP_008376869.1|	-	4.5e-82	276.0	0.0	6.5e-82	275.4	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.22	gi|529077866|ref|YP_008376869.1|	-	7.8e-58	195.8	0.0	1.6e-57	194.8	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.6	gi|529077866|ref|YP_008376869.1|	-	5.7e-23	80.8	0.3	2.7e-22	78.6	0.2	2.2	2	0	0	2	2	2	1	Fibronectin	type	III-like	domain
DUF4232	PF14016.6	gi|529077866|ref|YP_008376869.1|	-	0.014	15.5	0.2	0.038	14.1	0.2	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4232)
MotY_N	PF18393.1	gi|529077866|ref|YP_008376869.1|	-	0.21	11.7	0.0	1.1	9.4	0.0	2.0	2	0	0	2	2	2	0	MotY	N-terminal	domain
eIF-1a	PF01176.19	gi|529077867|ref|YP_008376870.1|	-	1.9e-24	85.2	0.7	2.4e-24	84.9	0.7	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
RIO1	PF01163.22	gi|529077868|ref|YP_008376871.1|	-	4.4e-58	196.0	0.1	1.9e-57	193.9	0.0	1.8	2	0	0	2	2	2	1	RIO1	family
APH	PF01636.23	gi|529077868|ref|YP_008376871.1|	-	1.4e-07	31.7	0.2	7.8e-06	26.0	0.0	2.4	1	1	1	2	2	2	1	Phosphotransferase	enzyme	family
Kdo	PF06293.14	gi|529077868|ref|YP_008376871.1|	-	1.5e-06	27.7	0.2	7.3e-06	25.5	0.2	1.9	1	1	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Pkinase	PF00069.25	gi|529077868|ref|YP_008376871.1|	-	0.00033	20.1	0.0	0.00047	19.6	0.0	1.2	1	0	0	1	1	1	1	Protein	kinase	domain
Pkinase_fungal	PF17667.1	gi|529077868|ref|YP_008376871.1|	-	0.00051	18.9	0.0	0.00068	18.5	0.0	1.2	1	0	0	1	1	1	1	Fungal	protein	kinase
WaaY	PF06176.11	gi|529077868|ref|YP_008376871.1|	-	0.049	13.2	0.0	0.079	12.6	0.0	1.3	1	0	0	1	1	1	0	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
UPF0236	PF06782.11	gi|529077869|ref|YP_008376872.1|	-	2.3e-06	26.5	0.0	0.00018	20.3	0.0	2.2	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|529077869|ref|YP_008376872.1|	-	0.0028	16.6	0.3	2.8	6.7	0.1	2.8	2	2	0	2	2	2	2	Transposase,	Mutator	family
DDE_Tnp_IS66	PF03050.14	gi|529077869|ref|YP_008376872.1|	-	0.0032	17.0	0.1	0.0046	16.5	0.1	1.2	1	0	0	1	1	1	1	Transposase	IS66	family
PAZ_siRNAbind	PF12212.8	gi|529077870|ref|YP_008376873.1|	-	0.059	13.2	0.1	0.071	12.9	0.1	1.1	1	0	0	1	1	1	0	PAZ	domain
Zn_Tnp_IS1	PF03811.13	gi|529077871|ref|YP_008376874.1|	-	0.12	12.1	4.5	4.1	7.2	3.7	2.3	1	1	1	2	2	2	0	InsA	N-terminal	domain
NRDD	PF13597.6	gi|529077872|ref|YP_008376875.1|	-	8.5e-189	628.9	0.0	9.8e-189	628.7	0.0	1.0	1	0	0	1	1	1	1	Anaerobic	ribonucleoside-triphosphate	reductase
ATP-cone	PF03477.16	gi|529077872|ref|YP_008376875.1|	-	3.3e-22	78.9	1.0	5.1e-22	78.2	0.2	1.8	2	0	0	2	2	2	1	ATP	cone	domain
DUF3029	PF11230.8	gi|529077872|ref|YP_008376875.1|	-	0.0076	14.7	0.1	0.62	8.4	0.0	2.8	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF3029)
Ribosomal_L32p	PF01783.23	gi|529077872|ref|YP_008376875.1|	-	0.35	11.2	2.1	0.71	10.2	2.1	1.4	1	0	0	1	1	1	0	Ribosomal	L32p	protein	family
Radical_SAM	PF04055.21	gi|529077873|ref|YP_008376876.1|	-	7.4e-20	72.0	0.0	9.2e-20	71.7	0.0	1.1	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|529077873|ref|YP_008376876.1|	-	2e-11	44.3	0.0	2.8e-11	43.9	0.0	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|529077873|ref|YP_008376876.1|	-	2.3e-11	43.8	0.0	3.4e-11	43.3	0.0	1.2	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
APG6_N	PF17675.1	gi|529077875|ref|YP_008376878.1|	-	0.021	15.4	0.3	0.18	12.3	0.1	2.0	2	0	0	2	2	2	0	Apg6	coiled-coil	region
TBCC_N	PF16752.5	gi|529077875|ref|YP_008376878.1|	-	0.023	15.1	0.5	0.47	10.9	0.3	2.2	2	0	0	2	2	2	0	Tubulin-specific	chaperone	C	N-terminal	domain
SKA2	PF16740.5	gi|529077875|ref|YP_008376878.1|	-	0.028	14.2	0.0	0.14	11.9	0.0	2.1	2	0	0	2	2	2	0	Spindle	and	kinetochore-associated	protein	2
ZnuA	PF01297.17	gi|529077875|ref|YP_008376878.1|	-	0.041	13.3	0.8	0.16	11.3	0.2	1.9	1	1	0	2	2	2	0	Zinc-uptake	complex	component	A	periplasmic
DUF724	PF05266.14	gi|529077875|ref|YP_008376878.1|	-	0.064	13.1	0.2	0.13	12.1	0.2	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
Metallophos	PF00149.28	gi|529077876|ref|YP_008376879.1|	-	4.3e-14	53.5	0.7	5.4e-14	53.2	0.7	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|529077876|ref|YP_008376879.1|	-	6.4e-06	26.5	9.7	2.2e-05	24.7	9.7	1.8	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos_3	PF14582.6	gi|529077876|ref|YP_008376879.1|	-	0.027	13.8	0.3	0.62	9.3	0.1	2.2	1	1	1	2	2	2	0	Metallophosphoesterase,	calcineurin	superfamily
SBP_bac_5	PF00496.22	gi|529077878|ref|YP_008376881.1|	-	6.3e-68	229.4	1.1	1e-67	228.8	1.1	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|529077878|ref|YP_008376881.1|	-	0.029	14.2	5.8	0.071	13.0	5.8	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.22	gi|529077879|ref|YP_008376882.1|	-	1.5e-32	112.9	11.7	1.5e-32	112.9	11.7	2.0	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Bac_export_2	PF01312.19	gi|529077879|ref|YP_008376882.1|	-	0.027	13.7	0.4	0.027	13.7	0.4	1.9	1	1	1	2	2	2	0	FlhB	HrpN	YscU	SpaS	Family
BPD_transp_1	PF00528.22	gi|529077880|ref|YP_008376883.1|	-	1.8e-16	60.4	7.6	1.8e-16	60.4	7.6	2.4	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|529077880|ref|YP_008376883.1|	-	2.2e-05	24.3	0.0	2.2e-05	24.3	0.0	4.2	5	0	0	5	5	5	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
EMC3_TMCO1	PF01956.16	gi|529077880|ref|YP_008376883.1|	-	0.21	11.3	0.4	0.5	10.1	0.4	1.6	1	0	0	1	1	1	0	Integral	membrane	protein	EMC3/TMCO1-like
ABC_tran	PF00005.27	gi|529077881|ref|YP_008376884.1|	-	2.2e-29	102.7	0.0	3e-29	102.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|529077881|ref|YP_008376884.1|	-	5.6e-20	71.6	1.4	1.2e-19	70.6	1.1	1.8	2	0	0	2	2	2	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|529077881|ref|YP_008376884.1|	-	2.8e-07	30.6	0.4	9e-06	25.7	0.0	2.1	1	1	1	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|529077881|ref|YP_008376884.1|	-	0.00076	19.8	0.0	0.0047	17.2	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|529077881|ref|YP_008376884.1|	-	0.0028	17.1	0.0	0.0054	16.2	0.0	1.4	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|529077881|ref|YP_008376884.1|	-	0.018	15.5	0.4	0.042	14.2	0.3	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA	PF00004.29	gi|529077881|ref|YP_008376884.1|	-	0.02	15.3	0.0	0.38	11.2	0.0	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|529077881|ref|YP_008376884.1|	-	0.084	12.6	0.1	0.16	11.7	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AIG1	PF04548.16	gi|529077881|ref|YP_008376884.1|	-	0.11	11.8	0.4	0.17	11.2	0.4	1.3	1	0	0	1	1	1	0	AIG1	family
ABC_tran	PF00005.27	gi|529077882|ref|YP_008376885.1|	-	1.1e-34	119.8	0.0	1.7e-34	119.3	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|529077882|ref|YP_008376885.1|	-	1e-12	48.3	0.1	2e-12	47.4	0.1	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|529077882|ref|YP_008376885.1|	-	1.2e-06	28.6	1.4	0.00086	19.2	0.4	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|529077882|ref|YP_008376885.1|	-	0.003	17.0	0.0	0.0082	15.6	0.0	1.6	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_25	PF13481.6	gi|529077882|ref|YP_008376885.1|	-	0.005	16.4	0.6	0.005	16.4	0.6	2.7	2	1	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|529077882|ref|YP_008376885.1|	-	0.014	15.6	0.6	0.061	13.6	0.6	2.1	1	1	0	1	1	1	0	AAA	domain
ATP-synt_ab	PF00006.25	gi|529077882|ref|YP_008376885.1|	-	0.031	13.9	0.0	0.031	13.9	0.0	1.2	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
SbcCD_C	PF13558.6	gi|529077882|ref|YP_008376885.1|	-	0.045	14.0	0.4	0.93	9.8	0.1	2.8	2	1	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_5	PF07728.14	gi|529077882|ref|YP_008376885.1|	-	0.098	12.7	0.9	3	7.9	0.3	2.4	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|529077882|ref|YP_008376885.1|	-	0.13	12.7	0.0	0.38	11.2	0.0	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RsgA_GTPase	PF03193.16	gi|529077882|ref|YP_008376885.1|	-	0.16	11.8	0.2	0.29	11.0	0.2	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_16	PF13191.6	gi|529077882|ref|YP_008376885.1|	-	0.26	11.6	4.7	0.15	12.4	1.1	2.2	2	1	0	2	2	2	0	AAA	ATPase	domain
PduV-EutP	PF10662.9	gi|529077882|ref|YP_008376885.1|	-	0.34	10.6	0.3	0.71	9.6	0.3	1.4	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
Inositol_P	PF00459.25	gi|529077883|ref|YP_008376886.1|	-	1.3e-48	165.8	1.0	1.6e-48	165.5	1.0	1.0	1	0	0	1	1	1	1	Inositol	monophosphatase	family
2-ph_phosp	PF04029.14	gi|529077884|ref|YP_008376887.1|	-	1e-23	83.7	0.0	1.3e-23	83.4	0.0	1.1	1	0	0	1	1	1	1	2-phosphosulpholactate	phosphatase
MazE_antitoxin	PF04014.18	gi|529077885|ref|YP_008376888.1|	-	6.8e-07	29.1	0.1	3e-06	27.0	0.0	2.1	2	0	0	2	2	2	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
Syntaxin-6_N	PF09177.11	gi|529077885|ref|YP_008376888.1|	-	0.7	10.5	3.2	5.4	7.6	1.7	2.8	2	1	0	2	2	2	0	Syntaxin	6,	N-terminal
PhoU	PF01895.19	gi|529077886|ref|YP_008376889.1|	-	7.6e-39	132.1	7.3	4.8e-21	75.0	0.5	2.1	2	0	0	2	2	2	2	PhoU	domain
ABC_tran	PF00005.27	gi|529077887|ref|YP_008376890.1|	-	6.6e-30	104.4	0.0	1e-29	103.8	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529077887|ref|YP_008376890.1|	-	1.2e-12	48.3	0.3	1.5e-06	28.3	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|529077887|ref|YP_008376890.1|	-	8.8e-10	38.4	1.8	3.7e-08	33.1	1.8	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|529077887|ref|YP_008376890.1|	-	6.1e-06	26.6	0.0	1.7e-05	25.1	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|529077887|ref|YP_008376890.1|	-	7.8e-05	22.5	0.1	0.002	17.9	0.0	2.2	1	1	0	2	2	2	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|529077887|ref|YP_008376890.1|	-	0.0005	20.0	0.1	0.0012	18.8	0.0	1.6	2	0	0	2	2	1	1	RsgA	GTPase
AAA_23	PF13476.6	gi|529077887|ref|YP_008376890.1|	-	0.00056	20.5	1.5	0.0017	18.9	0.0	2.1	2	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|529077887|ref|YP_008376890.1|	-	0.0013	19.1	1.5	0.0083	16.5	1.5	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
Rad17	PF03215.15	gi|529077887|ref|YP_008376890.1|	-	0.0014	18.6	0.0	0.0025	17.7	0.0	1.4	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_29	PF13555.6	gi|529077887|ref|YP_008376890.1|	-	0.0014	18.3	0.0	0.0029	17.3	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ABC_ATPase	PF09818.9	gi|529077887|ref|YP_008376890.1|	-	0.0015	17.4	0.2	0.21	10.3	0.0	2.1	2	0	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
AAA_30	PF13604.6	gi|529077887|ref|YP_008376890.1|	-	0.0032	17.2	0.3	0.13	11.9	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_24	PF13479.6	gi|529077887|ref|YP_008376890.1|	-	0.0055	16.4	0.0	0.011	15.4	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.6	gi|529077887|ref|YP_008376890.1|	-	0.0083	15.7	0.2	0.22	11.1	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
DeoRC	PF00455.22	gi|529077887|ref|YP_008376890.1|	-	0.013	15.5	0.0	0.021	14.8	0.0	1.3	1	0	0	1	1	1	0	DeoR	C	terminal	sensor	domain
ATPase	PF06745.13	gi|529077887|ref|YP_008376890.1|	-	0.017	14.5	0.1	0.059	12.7	0.0	1.8	2	0	0	2	2	2	0	KaiC
ATPase_2	PF01637.18	gi|529077887|ref|YP_008376890.1|	-	0.019	14.9	0.1	0.24	11.3	0.0	2.2	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
PRK	PF00485.18	gi|529077887|ref|YP_008376890.1|	-	0.02	14.7	0.2	0.077	12.7	0.2	2.1	1	1	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
Adeno_IVa2	PF02456.15	gi|529077887|ref|YP_008376890.1|	-	0.021	13.6	0.0	0.22	10.2	0.0	2.0	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
AAA_33	PF13671.6	gi|529077887|ref|YP_008376890.1|	-	0.032	14.4	0.2	0.09	12.9	0.0	2.0	3	1	0	3	3	1	0	AAA	domain
Rad51	PF08423.11	gi|529077887|ref|YP_008376890.1|	-	0.036	13.3	0.2	0.49	9.6	0.1	2.1	2	0	0	2	2	2	0	Rad51
NACHT	PF05729.12	gi|529077887|ref|YP_008376890.1|	-	0.039	13.9	0.0	0.084	12.8	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
KdpD	PF02702.17	gi|529077887|ref|YP_008376890.1|	-	0.043	13.3	0.3	0.068	12.6	0.3	1.3	1	0	0	1	1	1	0	Osmosensitive	K+	channel	His	kinase	sensor	domain
AAA_18	PF13238.6	gi|529077887|ref|YP_008376890.1|	-	0.045	14.3	0.0	0.11	13.0	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.22	gi|529077887|ref|YP_008376890.1|	-	0.046	12.9	0.0	0.078	12.2	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
ATP-synt_ab	PF00006.25	gi|529077887|ref|YP_008376890.1|	-	0.07	12.8	0.0	0.22	11.1	0.0	1.8	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Rxt3	PF08642.10	gi|529077887|ref|YP_008376890.1|	-	0.084	13.6	0.0	0.19	12.5	0.0	1.7	2	0	0	2	2	1	0	Histone	deacetylation	protein	Rxt3
IstB_IS21	PF01695.17	gi|529077887|ref|YP_008376890.1|	-	0.11	12.3	0.1	3.2	7.4	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
cobW	PF02492.19	gi|529077887|ref|YP_008376890.1|	-	0.11	12.1	0.1	0.25	10.9	0.0	1.6	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_28	PF13521.6	gi|529077887|ref|YP_008376890.1|	-	0.13	12.5	0.7	0.61	10.3	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.22	gi|529077887|ref|YP_008376890.1|	-	0.14	12.5	0.0	0.34	11.3	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
BPD_transp_1	PF00528.22	gi|529077888|ref|YP_008376891.1|	-	2e-21	76.6	11.2	2e-21	76.6	11.2	3.2	3	1	0	3	3	3	2	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|529077889|ref|YP_008376892.1|	-	2.6e-17	63.2	8.8	2.6e-17	63.2	8.8	2.6	1	1	2	3	3	3	2	Binding-protein-dependent	transport	system	inner	membrane	component
PBP_like_2	PF12849.7	gi|529077890|ref|YP_008376893.1|	-	3.4e-44	151.6	1.2	1.2e-21	77.7	0.2	2.3	2	0	0	2	2	2	2	PBP	superfamily	domain
PBP_like	PF12727.7	gi|529077890|ref|YP_008376893.1|	-	8.6e-17	60.9	0.0	3.5e-07	29.5	0.0	2.5	2	0	0	2	2	2	2	PBP	superfamily	domain
Amidinotransf	PF02274.17	gi|529077890|ref|YP_008376893.1|	-	0.047	12.8	0.0	7.8	5.5	0.0	2.1	2	0	0	2	2	2	0	Amidinotransferase
TAT_signal	PF10518.9	gi|529077890|ref|YP_008376893.1|	-	0.092	12.6	2.6	0.15	11.9	2.6	1.3	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
APH	PF01636.23	gi|529077891|ref|YP_008376894.1|	-	0.0006	19.8	0.1	0.00083	19.3	0.1	1.4	1	1	0	1	1	1	1	Phosphotransferase	enzyme	family
zf-RRN7	PF11781.8	gi|529077892|ref|YP_008376895.1|	-	0.00014	21.5	4.3	0.14	11.9	0.5	2.1	2	0	0	2	2	2	2	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Zn-ribbon_8	PF09723.10	gi|529077892|ref|YP_008376895.1|	-	0.00086	19.4	1.1	0.0011	19.0	1.1	1.3	1	0	0	1	1	1	1	Zinc	ribbon	domain
HalOD2	PF18547.1	gi|529077892|ref|YP_008376895.1|	-	0.00087	19.1	1.8	0.0042	16.9	0.4	2.1	2	0	0	2	2	2	1	Halobacterial	output	domain	2
Desulfoferrod_N	PF06397.12	gi|529077892|ref|YP_008376895.1|	-	0.0032	17.1	2.9	0.46	10.1	0.1	2.2	2	0	0	2	2	2	2	Desulfoferrodoxin,	N-terminal	domain
Methyltransf_13	PF08421.11	gi|529077892|ref|YP_008376895.1|	-	0.025	14.8	0.7	0.78	10.0	0.1	2.1	2	0	0	2	2	2	0	Putative	zinc	binding	domain
YhfH	PF14149.6	gi|529077892|ref|YP_008376895.1|	-	0.027	14.4	3.2	0.72	9.9	0.2	2.1	2	0	0	2	2	2	0	YhfH-like	protein
GATA	PF00320.27	gi|529077892|ref|YP_008376895.1|	-	0.033	13.8	1.7	0.033	13.8	1.7	1.7	2	0	0	2	2	2	0	GATA	zinc	finger
Zn_ribbon_SprT	PF17283.2	gi|529077892|ref|YP_008376895.1|	-	0.048	13.6	1.7	0.059	13.3	0.3	1.7	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
DUF4379	PF14311.6	gi|529077892|ref|YP_008376895.1|	-	0.097	13.1	3.6	0.31	11.4	3.7	1.6	1	1	1	2	2	2	0	Probable	Zinc-ribbon	domain
Rubredoxin_2	PF18073.1	gi|529077892|ref|YP_008376895.1|	-	0.25	11.1	5.5	0.62	9.8	0.7	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
RecR	PF02132.15	gi|529077892|ref|YP_008376895.1|	-	0.34	10.5	4.5	2.5	7.7	4.5	2.0	1	1	1	2	2	2	0	RecR	protein
TFIIS_C	PF01096.18	gi|529077892|ref|YP_008376895.1|	-	4	7.4	7.9	8.4	6.3	1.2	2.5	2	1	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
NurA	PF09376.10	gi|529077893|ref|YP_008376896.1|	-	1.5e-17	64.1	0.0	1.9e-17	63.8	0.0	1.1	1	0	0	1	1	1	1	NurA	domain
MFS_1_like	PF12832.7	gi|529077895|ref|YP_008376898.1|	-	1.6e-30	106.3	22.0	3.2e-30	105.3	22.0	1.5	1	1	0	1	1	1	1	MFS_1	like	family
MFS_1	PF07690.16	gi|529077895|ref|YP_008376898.1|	-	3.9e-17	62.2	55.6	1.9e-13	50.0	30.6	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Nuc_H_symport	PF03825.16	gi|529077895|ref|YP_008376898.1|	-	6.7e-09	35.2	23.8	9.1e-09	34.8	23.8	1.1	1	0	0	1	1	1	1	Nucleoside	H+	symporter
LacY_symp	PF01306.19	gi|529077895|ref|YP_008376898.1|	-	0.00016	20.6	6.9	0.00016	20.6	6.9	2.5	2	1	0	2	2	2	1	LacY	proton/sugar	symporter
DUF3980	PF13140.6	gi|529077895|ref|YP_008376898.1|	-	0.093	13.2	1.3	0.2	12.1	0.1	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3980)
iPGM_N	PF06415.13	gi|529077896|ref|YP_008376899.1|	-	3.8e-81	271.7	0.4	5e-81	271.3	0.4	1.2	1	0	0	1	1	1	1	BPG-independent	PGAM	N-terminus	(iPGM_N)
Metalloenzyme	PF01676.18	gi|529077896|ref|YP_008376899.1|	-	1e-68	231.4	0.2	1.2e-68	231.2	0.2	1.0	1	0	0	1	1	1	1	Metalloenzyme	superfamily
Phosphodiest	PF01663.22	gi|529077896|ref|YP_008376899.1|	-	4.4e-07	29.8	0.2	9.4e-07	28.7	0.2	1.5	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Sulfatase	PF00884.23	gi|529077896|ref|YP_008376899.1|	-	1.3e-05	24.8	0.1	0.00042	19.8	0.0	2.7	2	1	0	2	2	2	1	Sulfatase
PglZ	PF08665.12	gi|529077896|ref|YP_008376899.1|	-	0.0021	18.1	0.0	0.0062	16.6	0.0	1.8	2	0	0	2	2	2	1	PglZ	domain
HTH_20	PF12840.7	gi|529077897|ref|YP_008376900.1|	-	1.9e-05	24.6	0.9	3e-05	24.0	0.9	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|529077897|ref|YP_008376900.1|	-	2.4e-05	24.2	0.1	4.3e-05	23.4	0.1	1.4	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|529077897|ref|YP_008376900.1|	-	8e-05	22.5	0.3	0.00012	21.9	0.3	1.3	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|529077897|ref|YP_008376900.1|	-	0.00012	21.9	0.1	0.00016	21.5	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|529077897|ref|YP_008376900.1|	-	0.00043	20.7	0.1	0.00069	20.1	0.1	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Phage_rep_org_N	PF09681.10	gi|529077897|ref|YP_008376900.1|	-	0.00074	19.4	0.1	0.0014	18.5	0.0	1.5	2	0	0	2	2	2	1	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
DUF4747	PF15931.5	gi|529077897|ref|YP_008376900.1|	-	0.0014	18.4	0.4	0.0024	17.6	0.3	1.5	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4747)
DUF2250	PF10007.9	gi|529077897|ref|YP_008376900.1|	-	0.0019	18.3	0.0	0.0029	17.7	0.0	1.3	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_5	PF01022.20	gi|529077897|ref|YP_008376900.1|	-	0.012	15.5	0.0	0.019	14.8	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|529077897|ref|YP_008376900.1|	-	0.021	14.4	0.3	0.052	13.1	0.1	1.7	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|529077897|ref|YP_008376900.1|	-	0.041	13.7	0.2	0.066	13.0	0.2	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
SMC_ScpB	PF04079.16	gi|529077897|ref|YP_008376900.1|	-	0.072	12.7	0.0	0.091	12.4	0.0	1.2	1	0	0	1	1	1	0	Segregation	and	condensation	complex	subunit	ScpB
HTH_36	PF13730.6	gi|529077897|ref|YP_008376900.1|	-	0.19	11.7	0.0	0.31	11.0	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Peptidase_M48	PF01435.18	gi|529077899|ref|YP_008376902.1|	-	2.6e-38	131.8	0.2	3.4e-38	131.4	0.2	1.1	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|529077899|ref|YP_008376902.1|	-	2.7e-08	33.4	0.7	5.5e-08	32.3	0.1	1.8	1	1	1	2	2	2	1	BlaR1	peptidase	M56
SecD_SecF	PF02355.16	gi|529077899|ref|YP_008376902.1|	-	0.013	14.9	0.6	0.013	14.9	0.6	1.5	2	0	0	2	2	2	0	Protein	export	membrane	protein
SprT-like	PF10263.9	gi|529077899|ref|YP_008376902.1|	-	0.024	14.5	0.0	0.036	13.9	0.0	1.3	1	0	0	1	1	1	0	SprT-like	family
DUF45	PF01863.17	gi|529077899|ref|YP_008376902.1|	-	0.029	14.4	0.0	0.042	13.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF45
PhoR	PF11808.8	gi|529077899|ref|YP_008376902.1|	-	0.28	11.6	0.7	0.96	9.9	0.0	2.1	2	1	0	2	2	2	0	Phosphate	regulon	sensor	protein	PhoR
DUF2929	PF11151.8	gi|529077900|ref|YP_008376903.1|	-	0.12	12.7	2.9	0.22	11.8	0.4	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2929)
YbjQ_1	PF01906.17	gi|529077901|ref|YP_008376904.1|	-	3.8e-36	123.9	1.7	4.1e-36	123.8	1.7	1.0	1	0	0	1	1	1	1	Putative	heavy-metal-binding
SeleniumBinding	PF11524.8	gi|529077901|ref|YP_008376904.1|	-	0.029	14.8	0.2	0.15	12.5	0.1	1.9	1	1	1	2	2	2	0	Selenium	binding	protein
TauE	PF01925.19	gi|529077902|ref|YP_008376905.1|	-	7.8e-14	51.9	29.2	7.8e-14	51.9	29.2	1.5	2	0	0	2	2	2	1	Sulfite	exporter	TauE/SafE
MerE	PF05052.12	gi|529077902|ref|YP_008376905.1|	-	0.26	11.2	5.1	1.2	9.2	0.6	3.0	2	1	0	2	2	2	0	MerE	protein
zf_C2H2_ZHX	PF18387.1	gi|529077903|ref|YP_008376906.1|	-	0.01	15.4	0.7	0.021	14.4	0.7	1.5	1	1	0	1	1	1	0	Zinc-fingers	and	homeoboxes	C2H2	finger	domain
QRPTase_C	PF01729.19	gi|529077904|ref|YP_008376907.1|	-	8.9e-56	188.3	2.8	1.1e-55	188.0	2.8	1.1	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.16	gi|529077904|ref|YP_008376907.1|	-	3.7e-20	71.8	0.0	9.9e-20	70.4	0.0	1.8	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
Ribul_P_3_epim	PF00834.19	gi|529077904|ref|YP_008376907.1|	-	0.0065	15.9	0.9	0.2	11.0	0.1	2.2	1	1	1	2	2	2	2	Ribulose-phosphate	3	epimerase	family
FAD_binding_2	PF00890.24	gi|529077905|ref|YP_008376908.1|	-	2e-76	257.7	2.5	2.6e-76	257.4	2.5	1.1	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|529077905|ref|YP_008376908.1|	-	1.4e-09	37.6	0.2	9e-05	21.8	0.1	2.7	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|529077905|ref|YP_008376908.1|	-	2.1e-08	34.2	1.8	4.9e-08	32.9	1.6	2.0	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|529077905|ref|YP_008376908.1|	-	2.2e-07	30.3	0.3	5.8e-05	22.3	1.6	2.2	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.7	gi|529077905|ref|YP_008376908.1|	-	1.4e-06	28.0	3.8	0.00013	21.5	3.7	2.2	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Succ_DH_flav_C	PF02910.20	gi|529077905|ref|YP_008376908.1|	-	1.2e-05	25.3	0.0	2.7e-05	24.1	0.0	1.5	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
AlaDh_PNT_C	PF01262.21	gi|529077905|ref|YP_008376908.1|	-	0.00029	20.2	0.1	0.00049	19.5	0.1	1.4	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
HI0933_like	PF03486.14	gi|529077905|ref|YP_008376908.1|	-	0.0021	16.8	0.2	0.032	12.9	0.1	2.2	2	0	0	2	2	2	1	HI0933-like	protein
DUF2398	PF09661.10	gi|529077905|ref|YP_008376908.1|	-	0.0023	17.2	0.3	0.005	16.2	0.3	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2398)
NAD_binding_8	PF13450.6	gi|529077905|ref|YP_008376908.1|	-	0.012	15.9	2.5	0.012	15.8	0.8	1.9	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.27	gi|529077905|ref|YP_008376908.1|	-	0.017	15.7	0.1	0.056	14.0	0.1	1.9	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Ins134_P3_kin_N	PF17927.1	gi|529077905|ref|YP_008376908.1|	-	0.037	14.4	0.0	1.8	9.0	0.0	2.8	3	0	0	3	3	3	0	Inositol	1,3,4-trisphosphate	5/6-kinase	pre-ATP-grasp	domain
Pyr_redox_3	PF13738.6	gi|529077905|ref|YP_008376908.1|	-	0.11	11.8	0.0	0.17	11.1	0.0	1.3	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
NadA	PF02445.16	gi|529077906|ref|YP_008376909.1|	-	1.9e-105	352.3	0.0	2.2e-105	352.1	0.0	1.0	1	0	0	1	1	1	1	Quinolinate	synthetase	A	protein
PHO4	PF01384.20	gi|529077907|ref|YP_008376910.1|	-	9.7e-43	146.5	28.3	1.4e-42	146.0	28.3	1.2	1	0	0	1	1	1	1	Phosphate	transporter	family
AA_permease	PF00324.21	gi|529077908|ref|YP_008376911.1|	-	9.1e-47	159.7	39.6	1.1e-46	159.4	39.6	1.0	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease_2	PF13520.6	gi|529077908|ref|YP_008376911.1|	-	7.8e-42	143.6	40.1	9.7e-42	143.3	40.1	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Spore_permease	PF03845.13	gi|529077908|ref|YP_008376911.1|	-	9.7e-07	27.9	9.4	9.7e-07	27.9	9.4	2.4	2	1	0	2	2	2	1	Spore	germination	protein
AA_permease_C	PF13906.6	gi|529077908|ref|YP_008376911.1|	-	0.016	15.3	3.2	0.016	15.3	3.2	2.7	2	0	0	2	2	2	0	C-terminus	of	AA_permease
Usp	PF00582.26	gi|529077909|ref|YP_008376912.1|	-	1.1e-06	29.2	4.1	3.6e-05	24.3	0.8	2.6	2	1	0	2	2	2	2	Universal	stress	protein	family
adh_short	PF00106.25	gi|529077910|ref|YP_008376913.1|	-	7.4e-46	156.1	0.0	9.7e-46	155.7	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|529077910|ref|YP_008376913.1|	-	8e-35	120.5	0.1	1e-34	120.1	0.1	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|529077910|ref|YP_008376913.1|	-	2.2e-10	40.7	0.1	3e-10	40.3	0.1	1.2	1	0	0	1	1	1	1	KR	domain
NAD_binding_10	PF13460.6	gi|529077910|ref|YP_008376913.1|	-	8.4e-09	35.6	0.1	1.2e-08	35.1	0.1	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
Epimerase	PF01370.21	gi|529077910|ref|YP_008376913.1|	-	0.004	16.6	0.3	0.032	13.7	0.3	2.2	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3HCDH_N	PF02737.18	gi|529077910|ref|YP_008376913.1|	-	0.081	12.8	0.2	0.14	12.0	0.2	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Holin_SPP1	PF04688.13	gi|529077911|ref|YP_008376914.1|	-	0.018	15.2	1.0	0.031	14.4	1.0	1.3	1	0	0	1	1	1	0	SPP1	phage	holin
OrfB_Zn_ribbon	PF07282.11	gi|529077912|ref|YP_008376915.1|	-	2.3e-20	72.3	1.8	6e-20	70.9	1.8	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|529077912|ref|YP_008376915.1|	-	2.2e-05	24.7	0.4	5.4e-05	23.4	0.0	1.9	2	0	0	2	2	2	1	Probable	transposase
ABM	PF03992.16	gi|529077912|ref|YP_008376915.1|	-	0.041	14.0	0.1	0.15	12.2	0.0	1.9	2	0	0	2	2	2	0	Antibiotic	biosynthesis	monooxygenase
RAI1	PF08652.11	gi|529077912|ref|YP_008376915.1|	-	0.099	12.8	0.0	0.21	11.8	0.0	1.5	1	0	0	1	1	1	0	RAI1	like	PD-(D/E)XK	nuclease
PAS_4	PF08448.10	gi|529077913|ref|YP_008376916.1|	-	1.2e-45	154.2	8.1	1.4e-16	60.7	0.1	4.3	4	0	0	4	4	4	3	PAS	fold
PAS	PF00989.25	gi|529077913|ref|YP_008376916.1|	-	4.8e-34	116.8	0.2	3.2e-18	65.8	0.0	4.0	3	1	0	3	3	3	3	PAS	fold
PAS_9	PF13426.7	gi|529077913|ref|YP_008376916.1|	-	4.7e-24	84.6	0.1	5.1e-13	49.2	0.0	3.7	3	0	0	3	3	3	3	PAS	domain
HATPase_c	PF02518.26	gi|529077913|ref|YP_008376916.1|	-	2.6e-16	60.1	0.1	6e-16	58.9	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_8	PF13188.7	gi|529077913|ref|YP_008376916.1|	-	3.2e-16	58.9	0.4	8e-07	28.9	0.0	4.9	4	1	1	5	5	5	3	PAS	domain
HisKA	PF00512.25	gi|529077913|ref|YP_008376916.1|	-	1.5e-12	47.4	0.2	1.5e-12	47.4	0.2	3.2	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
Response_reg	PF00072.24	gi|529077913|ref|YP_008376916.1|	-	2.6e-12	46.9	0.0	6.5e-12	45.6	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
GAF_2	PF13185.6	gi|529077913|ref|YP_008376916.1|	-	3.8e-12	46.7	2.3	1.8e-11	44.5	0.1	3.2	2	1	2	4	4	4	1	GAF	domain
PAS_3	PF08447.12	gi|529077913|ref|YP_008376916.1|	-	8e-10	38.9	0.0	4.1e-07	30.2	0.0	3.5	3	0	0	3	3	3	1	PAS	fold
GAF_3	PF13492.6	gi|529077913|ref|YP_008376916.1|	-	7.2e-09	36.1	0.2	1.6e-06	28.4	0.0	3.8	3	1	0	3	3	3	1	GAF	domain
PAS_7	PF12860.7	gi|529077913|ref|YP_008376916.1|	-	0.022	14.9	0.1	0.73	10.0	0.0	3.6	3	1	0	3	3	3	0	PAS	fold
OKR_DC_1_N	PF03709.15	gi|529077913|ref|YP_008376916.1|	-	0.03	14.6	0.1	0.08	13.2	0.1	1.7	1	0	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
PAS_10	PF13596.6	gi|529077913|ref|YP_008376916.1|	-	0.066	13.8	0.0	0.55	10.8	0.0	2.4	2	0	0	2	2	2	0	PAS	domain
HisKA	PF00512.25	gi|529077914|ref|YP_008376917.1|	-	7.6e-14	51.5	1.1	1.4e-12	47.5	0.2	2.6	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c	PF02518.26	gi|529077914|ref|YP_008376917.1|	-	1e-12	48.5	0.0	2e-12	47.6	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF	PF01590.26	gi|529077914|ref|YP_008376917.1|	-	1.9e-07	31.8	0.0	3.8e-07	30.8	0.0	1.5	1	0	0	1	1	1	1	GAF	domain
GAF_2	PF13185.6	gi|529077914|ref|YP_008376917.1|	-	6.5e-07	29.7	0.2	2.6e-06	27.8	0.1	2.0	2	0	0	2	2	2	1	GAF	domain
GAF_3	PF13492.6	gi|529077914|ref|YP_008376917.1|	-	4.6e-05	23.8	0.0	0.00017	22.0	0.0	1.9	2	0	0	2	2	2	1	GAF	domain
Glyco_tranf_2_3	PF13641.6	gi|529077916|ref|YP_008376919.1|	-	3e-23	82.9	0.1	3.5e-22	79.4	0.1	2.0	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glycos_transf_2	PF00535.26	gi|529077916|ref|YP_008376919.1|	-	1.9e-19	70.1	0.5	2.3e-18	66.6	0.5	2.2	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_trans_2_3	PF13632.6	gi|529077916|ref|YP_008376919.1|	-	2.7e-15	56.8	2.3	2.7e-15	56.8	2.3	2.2	2	1	0	2	2	2	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.6	gi|529077916|ref|YP_008376919.1|	-	5.7e-09	35.7	0.1	5.6e-08	32.5	0.1	2.1	1	1	0	1	1	1	1	Glycosyl	transferase	family	21
Chitin_synth_2	PF03142.15	gi|529077916|ref|YP_008376919.1|	-	0.00026	19.7	1.9	0.0033	16.1	0.1	2.6	3	0	0	3	3	3	1	Chitin	synthase
Glyco_tranf_2_2	PF10111.9	gi|529077916|ref|YP_008376919.1|	-	0.00054	19.5	0.2	0.019	14.5	0.0	2.2	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
HEAT_2	PF13646.6	gi|529077917|ref|YP_008376920.1|	-	1.2e-12	48.0	5.4	3.5e-10	40.1	0.6	2.8	2	1	1	3	3	3	2	HEAT	repeats
HEAT	PF02985.22	gi|529077917|ref|YP_008376920.1|	-	0.0016	18.5	0.4	3.7	8.1	0.0	3.4	4	0	0	4	4	4	2	HEAT	repeat
HEAT_EZ	PF13513.6	gi|529077917|ref|YP_008376920.1|	-	0.015	15.8	0.3	1.6	9.4	0.2	3.3	2	0	0	2	2	2	0	HEAT-like	repeat
LapA_dom	PF06305.11	gi|529077917|ref|YP_008376920.1|	-	0.029	14.2	0.2	0.063	13.1	0.2	1.5	1	0	0	1	1	1	0	Lipopolysaccharide	assembly	protein	A	domain
HemY_N	PF07219.13	gi|529077917|ref|YP_008376920.1|	-	0.06	13.5	0.3	0.22	11.7	0.1	2.1	2	0	0	2	2	2	0	HemY	protein	N-terminus
HEAT_PBS	PF03130.16	gi|529077917|ref|YP_008376920.1|	-	1.4	9.8	5.1	0.41	11.5	0.7	2.6	3	0	0	3	3	3	0	PBS	lyase	HEAT-like	repeat
Response_reg	PF00072.24	gi|529077918|ref|YP_008376921.1|	-	1.8e-28	98.9	0.0	2e-28	98.8	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
FleQ	PF06490.11	gi|529077918|ref|YP_008376921.1|	-	0.00081	19.7	0.0	0.0011	19.4	0.0	1.2	1	0	0	1	1	1	1	Flagellar	regulatory	protein	FleQ
Methyltransf_11	PF08241.12	gi|529077920|ref|YP_008376923.1|	-	3.7e-22	78.8	0.1	7e-22	77.9	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|529077920|ref|YP_008376923.1|	-	9.6e-20	71.1	0.1	2.1e-19	70.0	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|529077920|ref|YP_008376923.1|	-	3.1e-19	69.4	0.0	3.7e-19	69.2	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|529077920|ref|YP_008376923.1|	-	2.3e-13	50.7	0.0	4.2e-13	49.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|529077920|ref|YP_008376923.1|	-	4.3e-11	42.6	0.0	6.3e-11	42.0	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_31	PF13847.6	gi|529077920|ref|YP_008376923.1|	-	8.4e-11	41.9	0.0	1.2e-10	41.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|529077920|ref|YP_008376923.1|	-	0.00045	19.9	0.0	0.00069	19.3	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_29	PF03141.16	gi|529077920|ref|YP_008376923.1|	-	0.014	13.9	0.0	0.015	13.8	0.0	1.1	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
Methyltransf_8	PF05148.15	gi|529077920|ref|YP_008376923.1|	-	0.046	13.6	0.0	0.064	13.1	0.0	1.3	1	0	0	1	1	1	0	Hypothetical	methyltransferase
MTS	PF05175.14	gi|529077920|ref|YP_008376923.1|	-	0.049	13.2	0.0	0.089	12.3	0.0	1.4	1	1	0	1	1	1	0	Methyltransferase	small	domain
RrnaAD	PF00398.20	gi|529077920|ref|YP_008376923.1|	-	0.078	12.0	0.0	0.1	11.6	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
DREV	PF05219.12	gi|529077920|ref|YP_008376923.1|	-	0.14	11.2	0.0	0.19	10.8	0.0	1.2	1	0	0	1	1	1	0	DREV	methyltransferase
DUF1349	PF07081.11	gi|529077921|ref|YP_008376924.1|	-	1.1e-64	217.5	0.9	1.2e-64	217.3	0.9	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1349)
GH43_C2	PF17851.1	gi|529077921|ref|YP_008376924.1|	-	6.6e-06	26.0	0.0	8.2e-06	25.7	0.0	1.2	1	0	0	1	1	1	1	Beta	xylosidase	C-terminal	Concanavalin	A-like	domain
AA_permease	PF00324.21	gi|529077922|ref|YP_008376925.1|	-	0.0053	15.4	1.1	0.0053	15.4	1.1	1.0	1	0	0	1	1	1	1	Amino	acid	permease
DUF4064	PF13273.6	gi|529077922|ref|YP_008376925.1|	-	0.021	15.1	1.6	0.021	15.1	1.6	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4064)
DUF3040	PF11239.8	gi|529077922|ref|YP_008376925.1|	-	0.96	9.8	5.3	1.2	9.4	5.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
PQQ_3	PF13570.6	gi|529077923|ref|YP_008376926.1|	-	0.13	12.8	2.0	0.26	11.8	0.1	2.6	3	0	0	3	3	3	0	PQQ-like	domain
IPTL-CTERM	PF18203.1	gi|529077923|ref|YP_008376926.1|	-	0.21	11.5	4.5	0.41	10.6	4.5	1.5	1	0	0	1	1	1	0	IPTL-CTERM	motif
TAT_signal	PF10518.9	gi|529077924|ref|YP_008376927.1|	-	1.6e-06	27.7	0.1	3.4e-06	26.7	0.1	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Dyp_perox	PF04261.12	gi|529077924|ref|YP_008376927.1|	-	0.03	13.3	0.0	0.37	9.7	0.0	2.4	2	1	0	2	2	2	0	Dyp-type	peroxidase	family
TAT_signal	PF10518.9	gi|529077925|ref|YP_008376928.1|	-	0.082	12.8	4.8	0.2	11.6	4.8	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
zinc_ribbon_2	PF13240.6	gi|529077926|ref|YP_008376929.1|	-	0.0014	18.2	0.7	0.029	14.1	0.1	2.1	2	0	0	2	2	2	1	zinc-ribbon	domain
Zn_ribbon_SprT	PF17283.2	gi|529077926|ref|YP_008376929.1|	-	0.0017	18.2	2.5	0.0069	16.3	2.5	1.8	1	1	0	1	1	1	1	SprT-like	zinc	ribbon	domain
DZR	PF12773.7	gi|529077926|ref|YP_008376929.1|	-	0.0024	17.8	0.4	0.0049	16.9	0.4	1.5	1	1	0	1	1	1	1	Double	zinc	ribbon
DUF35_N	PF12172.8	gi|529077926|ref|YP_008376929.1|	-	0.0035	17.2	1.5	0.57	10.1	0.2	2.1	2	0	0	2	2	2	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Terminase_GpA	PF05876.12	gi|529077926|ref|YP_008376929.1|	-	0.0061	15.2	0.1	0.0069	15.0	0.1	1.0	1	0	0	1	1	1	1	Phage	terminase	large	subunit	(GpA)
zf-ribbon_3	PF13248.6	gi|529077926|ref|YP_008376929.1|	-	0.0079	15.6	1.0	0.14	11.6	0.1	2.1	2	0	0	2	2	2	1	zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|529077926|ref|YP_008376929.1|	-	0.0084	16.0	0.9	3.3	7.7	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
Rubredoxin_2	PF18073.1	gi|529077926|ref|YP_008376929.1|	-	0.0097	15.6	1.4	0.18	11.6	0.1	2.1	2	0	0	2	2	2	1	Rubredoxin	metal	binding	domain
zf_UBZ	PF18439.1	gi|529077926|ref|YP_008376929.1|	-	0.016	14.8	1.3	0.59	9.8	0.1	2.1	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
DUF3268	PF11672.8	gi|529077926|ref|YP_008376929.1|	-	0.02	15.2	0.1	0.022	15.1	0.1	1.0	1	0	0	1	1	1	0	zinc-finger-containing	domain
CpXC	PF14353.6	gi|529077926|ref|YP_008376929.1|	-	0.024	14.7	0.9	0.89	9.6	1.0	2.0	1	1	0	1	1	1	0	CpXC	protein
zf-dskA_traR	PF01258.17	gi|529077926|ref|YP_008376929.1|	-	0.028	14.3	5.9	0.034	14.1	2.3	2.1	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
Rhodanese_C	PF12368.8	gi|529077926|ref|YP_008376929.1|	-	0.034	14.5	0.0	0.036	14.4	0.0	1.1	1	0	0	1	1	1	0	Rhodanase	C-terminal
DUF3797	PF12677.7	gi|529077926|ref|YP_008376929.1|	-	0.04	13.8	0.5	1.1	9.2	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3797)
zinc_ribbon_9	PF14369.6	gi|529077926|ref|YP_008376929.1|	-	0.042	14.1	1.0	3	8.2	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon
TF_Zn_Ribbon	PF08271.12	gi|529077926|ref|YP_008376929.1|	-	0.045	13.3	3.0	0.13	11.8	3.0	1.7	1	1	0	1	1	1	0	TFIIB	zinc-binding
FYDLN_acid	PF09538.10	gi|529077926|ref|YP_008376929.1|	-	0.046	14.4	1.2	2.7	8.7	0.1	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(FYDLN_acid)
zf_Rg	PF17915.1	gi|529077926|ref|YP_008376929.1|	-	0.058	12.8	1.0	0.61	9.5	0.2	2.1	2	0	0	2	2	2	0	Reverse	gyrase	zinc	finger
zinc_ribbon_15	PF17032.5	gi|529077926|ref|YP_008376929.1|	-	0.06	14.1	0.1	0.11	13.2	0.1	1.4	1	1	0	1	1	1	0	zinc-ribbon	family
zinc-ribbons_6	PF07191.12	gi|529077926|ref|YP_008376929.1|	-	0.073	13.1	0.6	0.16	12.0	0.6	1.5	1	1	0	1	1	1	0	zinc-ribbons
HypA	PF01155.19	gi|529077926|ref|YP_008376929.1|	-	0.081	12.9	0.3	0.1	12.6	0.3	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-TFIIB	PF13453.6	gi|529077926|ref|YP_008376929.1|	-	0.083	12.2	3.5	0.25	10.7	3.6	1.7	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
zf-FPG_IleRS	PF06827.14	gi|529077926|ref|YP_008376929.1|	-	0.091	12.6	1.1	0.091	12.6	1.1	2.1	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
zf-ACC	PF17848.1	gi|529077926|ref|YP_008376929.1|	-	0.12	12.5	0.6	7	6.8	0.1	2.3	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
Zn-ribbon_8	PF09723.10	gi|529077926|ref|YP_008376929.1|	-	0.15	12.2	5.0	1.2	9.3	4.9	2.0	1	1	1	2	2	2	0	Zinc	ribbon	domain
UPF0547	PF10571.9	gi|529077926|ref|YP_008376929.1|	-	0.15	12.1	4.2	1.3	9.2	0.3	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zinc_ribbon_5	PF13719.6	gi|529077926|ref|YP_008376929.1|	-	0.22	11.3	2.4	8.9	6.2	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|529077926|ref|YP_008376929.1|	-	0.77	9.8	10.1	1.1	9.4	1.4	3.2	2	2	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Zn_Tnp_IS1595	PF12760.7	gi|529077926|ref|YP_008376929.1|	-	3.6	7.6	6.7	53	3.9	6.6	2.0	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
UPF0029	PF01205.19	gi|529077927|ref|YP_008376930.1|	-	9.4e-29	99.8	0.0	1.3e-28	99.4	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0029
DUF1949	PF09186.11	gi|529077927|ref|YP_008376930.1|	-	8.9e-11	41.5	0.6	1.8e-10	40.5	0.0	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1949)
EFG_C	PF00679.24	gi|529077927|ref|YP_008376930.1|	-	0.0015	18.5	0.0	0.0026	17.7	0.0	1.4	1	0	0	1	1	1	1	Elongation	factor	G	C-terminus
MazE_antitoxin	PF04014.18	gi|529077928|ref|YP_008376931.1|	-	1.9e-05	24.4	0.1	2.8e-05	23.9	0.1	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|529077928|ref|YP_008376931.1|	-	8.6e-05	22.9	0.0	0.00014	22.3	0.0	1.3	1	0	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
DUF302	PF03625.14	gi|529077928|ref|YP_008376931.1|	-	0.12	12.3	0.0	0.25	11.3	0.0	1.5	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF302
PIN	PF01850.21	gi|529077929|ref|YP_008376932.1|	-	4.8e-10	40.0	0.2	5.5e-10	39.8	0.2	1.0	1	0	0	1	1	1	1	PIN	domain
PIN_3	PF13470.6	gi|529077929|ref|YP_008376932.1|	-	0.0072	17.1	0.1	0.0087	16.8	0.1	1.2	1	0	0	1	1	1	1	PIN	domain
UPRTase	PF14681.6	gi|529077930|ref|YP_008376933.1|	-	4e-52	176.7	0.0	4.6e-52	176.5	0.0	1.0	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Pribosyltran	PF00156.27	gi|529077930|ref|YP_008376933.1|	-	5.5e-09	35.7	0.2	8e-09	35.2	0.2	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
PRTase_2	PF15609.6	gi|529077930|ref|YP_008376933.1|	-	0.12	11.8	0.0	0.22	11.0	0.0	1.5	1	1	0	1	1	1	0	Phosphoribosyl	transferase
PHO4	PF01384.20	gi|529077932|ref|YP_008376935.1|	-	9.8e-48	162.9	27.5	9.8e-48	162.9	27.5	1.4	1	1	0	1	1	1	1	Phosphate	transporter	family
MlrC_C	PF07171.12	gi|529077932|ref|YP_008376935.1|	-	0.035	14.3	0.8	0.081	13.1	0.8	1.6	1	0	0	1	1	1	0	MlrC	C-terminus
DUF21	PF01595.20	gi|529077933|ref|YP_008376936.1|	-	7.5e-51	172.3	1.4	1.1e-50	171.7	1.4	1.2	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
CorC_HlyC	PF03471.17	gi|529077933|ref|YP_008376936.1|	-	4e-21	74.8	2.1	4e-21	74.8	2.1	1.9	2	0	0	2	2	2	1	Transporter	associated	domain
CBS	PF00571.28	gi|529077933|ref|YP_008376936.1|	-	1.7e-11	44.4	6.6	4.3e-05	23.9	0.3	3.0	3	0	0	3	3	3	2	CBS	domain
PHB_acc_N	PF07879.11	gi|529077933|ref|YP_008376936.1|	-	0.023	14.8	1.6	0.22	11.6	0.0	2.8	3	0	0	3	3	3	0	PHB/PHA	accumulation	regulator	DNA-binding	domain
Sua5_yciO_yrdC	PF01300.18	gi|529077934|ref|YP_008376937.1|	-	7.7e-49	165.6	0.0	8.8e-49	165.4	0.0	1.0	1	0	0	1	1	1	1	Telomere	recombination
Cas_Cas4	PF01930.17	gi|529077935|ref|YP_008376938.1|	-	2.9e-05	24.2	0.0	8.7e-05	22.7	0.0	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.7	gi|529077935|ref|YP_008376938.1|	-	0.048	13.6	0.2	0.16	11.9	0.0	1.9	2	1	0	2	2	2	0	PD-(D/E)XK	nuclease	superfamily
Stealth_CR3	PF17102.5	gi|529077936|ref|YP_008376939.1|	-	0.12	12.3	0.8	2.5	8.1	0.2	2.7	2	0	0	2	2	2	0	Stealth	protein	CR3,	conserved	region	3
Pribosyltran_N	PF13793.6	gi|529077937|ref|YP_008376940.1|	-	5.4e-24	84.4	0.0	1.3e-21	76.7	0.0	2.2	2	0	0	2	2	2	2	N-terminal	domain	of	ribose	phosphate	pyrophosphokinase
Pribosyltran	PF00156.27	gi|529077937|ref|YP_008376940.1|	-	1.2e-06	28.1	1.7	3e-06	26.9	0.8	2.2	2	1	0	2	2	2	1	Phosphoribosyl	transferase	domain
DUF4988	PF16378.5	gi|529077938|ref|YP_008376941.1|	-	0.11	12.1	0.1	0.22	11.2	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function
DUF3568	PF12092.8	gi|529077938|ref|YP_008376941.1|	-	0.58	10.3	2.8	0.27	11.3	0.4	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3568)
PK_C	PF02887.16	gi|529077939|ref|YP_008376942.1|	-	2.6e-08	34.1	0.0	4e-08	33.5	0.0	1.3	1	1	0	1	1	1	1	Pyruvate	kinase,	alpha/beta	domain
GARS_C	PF02843.16	gi|529077939|ref|YP_008376942.1|	-	0.049	13.9	0.1	0.16	12.3	0.1	1.9	2	0	0	2	2	2	0	Phosphoribosylglycinamide	synthetase,	C	domain
PCMT	PF01135.19	gi|529077939|ref|YP_008376942.1|	-	0.13	12.0	0.1	2	8.1	0.0	2.1	2	0	0	2	2	2	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
TIM	PF00121.18	gi|529077939|ref|YP_008376942.1|	-	0.16	11.3	0.0	0.19	11.0	0.0	1.2	1	0	0	1	1	1	0	Triosephosphate	isomerase
MatE	PF01554.18	gi|529077940|ref|YP_008376943.1|	-	4.1e-52	176.1	22.7	3.6e-31	108.0	7.5	3.2	4	0	0	4	4	4	2	MatE
Polysacc_synt_C	PF14667.6	gi|529077940|ref|YP_008376943.1|	-	3.7e-07	30.3	10.3	3.7e-07	30.3	10.3	4.3	3	1	1	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
TrkA_N	PF02254.18	gi|529077941|ref|YP_008376944.1|	-	2.4e-26	92.2	0.7	3.9e-26	91.6	0.7	1.3	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|529077941|ref|YP_008376944.1|	-	5.1e-12	45.5	0.1	1e-11	44.5	0.1	1.5	1	0	0	1	1	1	1	TrkA-C	domain
NAD_binding_7	PF13241.6	gi|529077941|ref|YP_008376944.1|	-	5.8e-06	26.7	0.2	9.5e-06	26.0	0.2	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
UDPG_MGDP_dh_N	PF03721.14	gi|529077941|ref|YP_008376944.1|	-	2.3e-05	24.1	0.0	3.9e-05	23.3	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|529077941|ref|YP_008376944.1|	-	4.5e-05	23.4	0.3	6.5e-05	22.9	0.3	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AdoHcyase_NAD	PF00670.21	gi|529077941|ref|YP_008376944.1|	-	4.8e-05	23.5	0.1	6.4e-05	23.1	0.1	1.3	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
FAD_binding_3	PF01494.19	gi|529077941|ref|YP_008376944.1|	-	8.5e-05	21.9	0.1	0.00011	21.6	0.1	1.1	1	0	0	1	1	1	1	FAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|529077941|ref|YP_008376944.1|	-	0.00027	21.2	0.1	0.00037	20.7	0.1	1.3	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
ApbA	PF02558.16	gi|529077941|ref|YP_008376944.1|	-	0.00033	20.3	0.1	0.00051	19.7	0.1	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
NmrA	PF05368.13	gi|529077941|ref|YP_008376944.1|	-	0.0007	19.2	0.3	0.0012	18.4	0.3	1.4	1	1	0	1	1	1	1	NmrA-like	family
2-Hacid_dh_C	PF02826.19	gi|529077941|ref|YP_008376944.1|	-	0.0012	18.3	0.1	0.0019	17.6	0.1	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|529077941|ref|YP_008376944.1|	-	0.002	17.7	0.1	0.0034	17.0	0.1	1.4	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
NAD_binding_2	PF03446.15	gi|529077941|ref|YP_008376944.1|	-	0.0027	17.9	0.0	0.0046	17.1	0.0	1.5	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Epimerase	PF01370.21	gi|529077941|ref|YP_008376944.1|	-	0.0032	17.0	0.1	0.0042	16.6	0.1	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Gp_dh_N	PF00044.24	gi|529077941|ref|YP_008376944.1|	-	0.0076	16.6	0.1	0.013	15.8	0.1	1.4	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
Pyr_redox_2	PF07992.14	gi|529077941|ref|YP_008376944.1|	-	0.01	15.1	0.1	0.014	14.6	0.1	1.3	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|529077941|ref|YP_008376944.1|	-	0.011	16.3	0.3	0.022	15.3	0.3	1.5	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
F420_oxidored	PF03807.17	gi|529077941|ref|YP_008376944.1|	-	0.017	15.7	0.3	0.085	13.5	0.1	2.1	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
AlaDh_PNT_C	PF01262.21	gi|529077941|ref|YP_008376944.1|	-	0.032	13.5	0.3	0.041	13.2	0.3	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
DAO	PF01266.24	gi|529077941|ref|YP_008376944.1|	-	0.034	13.7	0.6	0.068	12.7	0.3	1.4	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
XdhC_C	PF13478.6	gi|529077941|ref|YP_008376944.1|	-	0.066	13.7	0.1	0.12	12.9	0.1	1.5	1	0	0	1	1	1	0	XdhC	Rossmann	domain
adh_short_C2	PF13561.6	gi|529077941|ref|YP_008376944.1|	-	0.075	12.6	0.8	0.12	11.9	0.8	1.5	1	0	0	1	1	1	0	Enoyl-(Acyl	carrier	protein)	reductase
Thi4	PF01946.17	gi|529077941|ref|YP_008376944.1|	-	0.081	12.1	0.1	0.1	11.9	0.1	1.2	1	0	0	1	1	1	0	Thi4	family
Glyco_transf_4	PF13439.6	gi|529077941|ref|YP_008376944.1|	-	0.15	12.1	0.3	0.35	10.8	0.1	1.7	2	0	0	2	2	2	0	Glycosyltransferase	Family	4
HTH_24	PF13412.6	gi|529077942|ref|YP_008376945.1|	-	1.8e-12	46.6	0.2	3e-12	45.9	0.2	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.21	gi|529077942|ref|YP_008376945.1|	-	3.1e-12	46.3	0.0	5.2e-12	45.6	0.0	1.4	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_5	PF01022.20	gi|529077942|ref|YP_008376945.1|	-	1.4e-08	34.4	0.1	2.8e-08	33.5	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_AsnC-type	PF13404.6	gi|529077942|ref|YP_008376945.1|	-	1.8e-08	34.1	0.5	2.8e-08	33.5	0.5	1.3	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_20	PF12840.7	gi|529077942|ref|YP_008376945.1|	-	1.2e-06	28.5	0.0	2e-06	27.7	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|529077942|ref|YP_008376945.1|	-	2.1e-06	27.6	0.0	4.4e-06	26.6	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_DeoR	PF08220.12	gi|529077942|ref|YP_008376945.1|	-	7.9e-05	22.3	0.4	0.00016	21.3	0.1	1.7	2	0	0	2	2	1	1	DeoR-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|529077942|ref|YP_008376945.1|	-	0.0001	22.0	0.0	0.00017	21.3	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
GntR	PF00392.21	gi|529077942|ref|YP_008376945.1|	-	0.00055	19.5	0.0	0.0012	18.5	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
MarR	PF01047.22	gi|529077942|ref|YP_008376945.1|	-	0.00079	19.3	0.0	0.0016	18.3	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|529077942|ref|YP_008376945.1|	-	0.00087	19.2	0.0	0.0016	18.4	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_38	PF13936.6	gi|529077942|ref|YP_008376945.1|	-	0.0011	18.7	0.0	0.0024	17.6	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|529077942|ref|YP_008376945.1|	-	0.0029	17.3	0.0	0.0049	16.6	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_10	PF04967.12	gi|529077942|ref|YP_008376945.1|	-	0.0032	17.2	0.0	0.0077	16.0	0.0	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_28	PF13518.6	gi|529077942|ref|YP_008376945.1|	-	0.0033	17.5	0.0	0.0053	16.9	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|529077942|ref|YP_008376945.1|	-	0.0038	17.1	0.0	0.007	16.2	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_50	PF18024.1	gi|529077942|ref|YP_008376945.1|	-	0.0086	15.7	0.0	0.017	14.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|529077942|ref|YP_008376945.1|	-	0.0096	15.9	0.0	0.014	15.4	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn	helix
MarR_2	PF12802.7	gi|529077942|ref|YP_008376945.1|	-	0.032	14.1	0.0	0.054	13.4	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HTH_34	PF13601.6	gi|529077942|ref|YP_008376945.1|	-	0.043	14.0	0.0	0.076	13.2	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.19	gi|529077942|ref|YP_008376945.1|	-	0.043	14.0	0.0	0.084	13.1	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_36	PF13730.6	gi|529077942|ref|YP_008376945.1|	-	0.046	13.7	0.0	0.078	12.9	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|529077942|ref|YP_008376945.1|	-	0.061	13.7	0.0	0.13	12.6	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_40	PF14493.6	gi|529077942|ref|YP_008376945.1|	-	0.071	13.6	0.0	0.12	12.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_9	PF08221.11	gi|529077942|ref|YP_008376945.1|	-	0.11	12.6	0.0	0.18	11.9	0.0	1.3	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
Mga	PF05043.13	gi|529077942|ref|YP_008376945.1|	-	0.15	12.7	0.0	0.33	11.6	0.0	1.5	1	0	0	1	1	1	0	Mga	helix-turn-helix	domain
Gln-synt_C	PF00120.24	gi|529077943|ref|YP_008376946.1|	-	1.2e-136	455.3	0.0	1.4e-136	455.0	0.0	1.1	1	0	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N	PF03951.19	gi|529077943|ref|YP_008376946.1|	-	8.7e-30	102.3	0.9	1.5e-29	101.5	0.1	1.9	2	0	0	2	2	2	1	Glutamine	synthetase,	beta-Grasp	domain
Gln-synt_N_2	PF16952.5	gi|529077943|ref|YP_008376946.1|	-	0.031	14.1	0.1	0.25	11.2	0.1	2.2	1	1	0	1	1	1	0	Glutamine	synthetase	N-terminal	domain
PAP2	PF01569.21	gi|529077944|ref|YP_008376947.1|	-	4.4e-12	45.9	2.8	4.4e-12	45.9	2.8	2.6	3	1	0	3	3	3	1	PAP2	superfamily
PAP2_3	PF14378.6	gi|529077944|ref|YP_008376947.1|	-	0.0037	17.0	3.9	0.0037	17.0	3.9	2.2	2	0	0	2	2	2	1	PAP2	superfamily
Virul_fac_BrkB	PF03631.15	gi|529077945|ref|YP_008376948.1|	-	2.2e-43	148.8	27.8	2.2e-43	148.8	27.8	2.1	2	0	0	2	2	2	1	Virulence	factor	BrkB
DUF1192	PF06698.11	gi|529077945|ref|YP_008376948.1|	-	0.018	15.1	1.2	0.037	14.1	1.2	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1192)
Jnk-SapK_ap_N	PF09744.9	gi|529077945|ref|YP_008376948.1|	-	0.32	11.2	1.1	0.49	10.6	1.1	1.1	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
DUF4349	PF14257.6	gi|529077945|ref|YP_008376948.1|	-	0.82	9.1	0.0	0.82	9.1	0.0	3.4	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF4349)
DUF3325	PF11804.8	gi|529077946|ref|YP_008376949.1|	-	0.92	9.7	12.2	0.25	11.5	5.3	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3325)
DUF2892	PF11127.8	gi|529077946|ref|YP_008376949.1|	-	1.5	8.9	12.7	0.13	12.3	3.5	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2892)
ADH_N_2	PF16884.5	gi|529077947|ref|YP_008376950.1|	-	1.9e-41	140.3	0.1	4.2e-41	139.2	0.1	1.6	1	0	0	1	1	1	1	N-terminal	domain	of	oxidoreductase
ADH_zinc_N	PF00107.26	gi|529077947|ref|YP_008376950.1|	-	1.1e-17	64.2	0.1	2.1e-17	63.3	0.1	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|529077947|ref|YP_008376950.1|	-	2.3e-11	44.9	0.0	4.1e-11	44.1	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
PQQ_3	PF13570.6	gi|529077948|ref|YP_008376951.1|	-	1.2e-66	219.6	52.2	1.4e-10	41.3	3.3	8.3	8	0	0	8	8	8	8	PQQ-like	domain
PQQ_2	PF13360.6	gi|529077948|ref|YP_008376951.1|	-	2.5e-60	204.0	46.8	1.4e-19	70.7	6.1	4.2	1	1	4	5	5	5	5	PQQ-like	domain
PQQ	PF01011.21	gi|529077948|ref|YP_008376951.1|	-	1.9e-45	150.7	33.6	8.1e-08	31.8	0.2	10.4	10	1	0	10	10	10	8	PQQ	enzyme	repeat
Lipase_C	PF18067.1	gi|529077948|ref|YP_008376951.1|	-	0.01	16.4	5.3	46	4.6	0.1	6.1	6	1	0	6	6	6	0	Lipase	C-terminal	domain
SUKH-4	PF14435.6	gi|529077948|ref|YP_008376951.1|	-	0.041	13.9	7.7	8.4	6.4	0.1	4.6	1	1	2	4	4	4	0	SUKH-4	immunity	protein
DUF5074	PF16819.5	gi|529077948|ref|YP_008376951.1|	-	0.076	13.1	0.4	92	3.1	0.0	4.2	2	1	1	4	4	4	0	Domain	of	unknown	function	(DUF5074)
TRM	PF02005.16	gi|529077949|ref|YP_008376952.1|	-	1.1e-93	314.4	0.0	1.3e-93	314.2	0.0	1.0	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
MTS	PF05175.14	gi|529077949|ref|YP_008376952.1|	-	2.3e-06	27.3	0.0	6.1e-06	25.9	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	small	domain
Methyltransf_25	PF13649.6	gi|529077949|ref|YP_008376952.1|	-	0.00016	22.3	0.2	0.00052	20.7	0.2	1.9	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|529077949|ref|YP_008376952.1|	-	0.0019	18.0	0.0	0.0029	17.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|529077949|ref|YP_008376952.1|	-	0.0047	16.6	0.0	0.0078	15.9	0.0	1.3	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
PrmA	PF06325.13	gi|529077949|ref|YP_008376952.1|	-	0.0068	15.8	0.1	0.01	15.2	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Zn-ribbon_8	PF09723.10	gi|529077949|ref|YP_008376952.1|	-	0.15	12.2	3.4	0.47	10.6	2.9	2.0	2	0	0	2	2	2	0	Zinc	ribbon	domain
Arg_decarbox_C	PF17944.1	gi|529077949|ref|YP_008376952.1|	-	0.18	12.3	1.1	0.75	10.4	0.3	2.6	2	1	0	2	2	2	0	Arginine	decarboxylase	C-terminal	helical	extension
SWIM	PF04434.17	gi|529077950|ref|YP_008376953.1|	-	0.00032	20.3	2.7	0.0029	17.3	2.7	2.1	1	1	0	1	1	1	1	SWIM	zinc	finger
Thg1	PF04446.12	gi|529077950|ref|YP_008376953.1|	-	0.13	12.3	0.0	0.17	11.9	0.0	1.2	1	0	0	1	1	1	0	tRNAHis	guanylyltransferase
TAT_signal	PF10518.9	gi|529077951|ref|YP_008376954.1|	-	0.018	14.9	0.6	0.037	13.9	0.6	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PALP	PF00291.25	gi|529077952|ref|YP_008376955.1|	-	2.9e-81	273.1	11.3	3.7e-81	272.8	11.3	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ACT_4	PF13291.6	gi|529077952|ref|YP_008376955.1|	-	5.4e-06	26.9	0.0	1.5e-05	25.4	0.0	1.8	1	0	0	1	1	1	1	ACT	domain
ACT	PF01842.25	gi|529077952|ref|YP_008376955.1|	-	0.0012	18.6	0.2	0.0038	17.0	0.2	1.9	1	0	0	1	1	1	1	ACT	domain
Aldo_ket_red	PF00248.21	gi|529077953|ref|YP_008376956.1|	-	1.8e-62	211.2	0.0	4.6e-60	203.3	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
Citrate_synt	PF00285.21	gi|529077954|ref|YP_008376957.1|	-	5e-123	410.7	0.1	5.7e-123	410.6	0.1	1.0	1	0	0	1	1	1	1	Citrate	synthase,	C-terminal	domain
TrkA_C	PF02080.21	gi|529077955|ref|YP_008376958.1|	-	2e-31	107.6	0.6	2.5e-18	65.7	0.0	2.8	2	0	0	2	2	2	2	TrkA-C	domain
PhoU	PF01895.19	gi|529077955|ref|YP_008376958.1|	-	3.2e-19	69.2	10.9	9.2e-11	42.1	1.5	3.0	3	0	0	3	3	3	2	PhoU	domain
CLZ	PF16526.5	gi|529077955|ref|YP_008376958.1|	-	0.22	11.9	2.1	4.8	7.6	0.1	2.7	2	1	1	3	3	3	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
KfrA_N	PF11740.8	gi|529077955|ref|YP_008376958.1|	-	3.6	8.3	13.3	3	8.5	0.3	3.8	3	1	1	4	4	4	0	Plasmid	replication	region	DNA-binding	N-term
Reticulon	PF02453.17	gi|529077956|ref|YP_008376959.1|	-	0.014	15.4	0.4	0.016	15.2	0.4	1.1	1	0	0	1	1	1	0	Reticulon
Phage_holin_3_6	PF07332.11	gi|529077956|ref|YP_008376959.1|	-	0.021	14.9	5.5	0.027	14.5	5.5	1.1	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF3742	PF12553.8	gi|529077956|ref|YP_008376959.1|	-	0.034	14.3	0.5	0.038	14.1	0.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3742)
LptF_LptG	PF03739.14	gi|529077956|ref|YP_008376959.1|	-	0.52	9.1	3.3	0.59	8.9	3.3	1.0	1	0	0	1	1	1	0	Lipopolysaccharide	export	system	permease	LptF/LptG
HisG	PF01634.18	gi|529077957|ref|YP_008376960.1|	-	3.1e-48	163.8	0.1	4.8e-48	163.1	0.1	1.2	1	0	0	1	1	1	1	ATP	phosphoribosyltransferase
HisG_C	PF08029.11	gi|529077957|ref|YP_008376960.1|	-	9e-27	93.0	0.1	1.5e-26	92.3	0.1	1.4	1	0	0	1	1	1	1	HisG,	C-terminal	domain
NMT1	PF09084.11	gi|529077957|ref|YP_008376960.1|	-	0.00019	21.5	0.1	0.00028	20.9	0.1	1.2	1	0	0	1	1	1	1	NMT1/THI5	like
HATPase_c	PF02518.26	gi|529077958|ref|YP_008376961.1|	-	2.6e-16	60.1	0.1	4.3e-16	59.4	0.1	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA_7TM	PF16927.5	gi|529077958|ref|YP_008376961.1|	-	3.2e-16	60.1	13.0	4.5e-16	59.5	13.0	1.1	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
HisKA	PF00512.25	gi|529077958|ref|YP_008376961.1|	-	5.9e-11	42.2	1.7	5.9e-11	42.2	1.7	2.4	2	1	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|529077958|ref|YP_008376961.1|	-	1.3e-05	25.4	0.2	5.4e-05	23.4	0.2	2.2	1	1	0	1	1	1	1	PAS	fold
Exonuc_VII_L	PF02601.15	gi|529077958|ref|YP_008376961.1|	-	0.0051	16.4	0.2	0.013	15.1	0.2	1.7	1	1	0	1	1	1	1	Exonuclease	VII,	large	subunit
HATPase_c_3	PF13589.6	gi|529077958|ref|YP_008376961.1|	-	0.0063	16.4	0.0	0.012	15.4	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_8	PF13188.7	gi|529077958|ref|YP_008376961.1|	-	0.012	15.6	0.1	0.055	13.5	0.1	2.2	1	0	0	1	1	1	0	PAS	domain
LUC7	PF03194.15	gi|529077958|ref|YP_008376961.1|	-	0.02	14.6	0.3	0.033	13.9	0.3	1.2	1	0	0	1	1	1	0	LUC7	N_terminus
HATPase_c_2	PF13581.6	gi|529077958|ref|YP_008376961.1|	-	0.022	14.7	0.1	0.048	13.6	0.1	1.5	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
PAS	PF00989.25	gi|529077958|ref|YP_008376961.1|	-	0.025	14.6	0.0	0.25	11.3	0.0	2.5	2	0	0	2	2	2	0	PAS	fold
PAS_10	PF13596.6	gi|529077958|ref|YP_008376961.1|	-	0.11	13.1	0.1	0.46	11.1	0.0	2.0	1	1	1	2	2	2	0	PAS	domain
RHH_1	PF01402.21	gi|529077959|ref|YP_008376962.1|	-	2e-06	27.5	0.7	2.5e-06	27.2	0.7	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
ParG	PF09274.10	gi|529077959|ref|YP_008376962.1|	-	0.049	13.8	0.6	0.088	13.0	0.6	1.6	1	1	0	1	1	1	0	ParG
Amidohydro_1	PF01979.20	gi|529077960|ref|YP_008376963.1|	-	2e-69	234.5	2.2	2.3e-69	234.3	2.2	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|529077960|ref|YP_008376963.1|	-	1.6e-20	74.0	18.5	1.7e-15	57.5	11.6	2.7	2	1	0	2	2	2	2	Amidohydrolase	family
A_deaminase	PF00962.22	gi|529077960|ref|YP_008376963.1|	-	1.7e-05	24.3	0.0	4.2e-05	23.0	0.0	1.6	2	0	0	2	2	2	1	Adenosine/AMP	deaminase
YtkA	PF13115.6	gi|529077961|ref|YP_008376964.1|	-	0.73	10.5	4.9	0.17	12.5	0.4	2.2	2	1	0	2	2	2	0	YtkA-like
AdoHcyase	PF05221.17	gi|529077962|ref|YP_008376965.1|	-	3.5e-50	170.8	0.0	3.2e-24	85.6	0.0	2.0	1	1	1	2	2	2	2	S-adenosyl-L-homocysteine	hydrolase
AdoHcyase_NAD	PF00670.21	gi|529077962|ref|YP_008376965.1|	-	1.7e-48	164.7	1.2	2.1e-48	164.5	0.3	1.5	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|529077962|ref|YP_008376965.1|	-	7.1e-13	48.3	0.3	1.3e-12	47.4	0.3	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|529077962|ref|YP_008376965.1|	-	1.4e-08	34.5	0.2	3.1e-08	33.4	0.2	1.6	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
TrkA_N	PF02254.18	gi|529077962|ref|YP_008376965.1|	-	0.0026	18.0	0.1	0.0079	16.4	0.1	1.9	1	0	0	1	1	1	1	TrkA-N	domain
AlaDh_PNT_C	PF01262.21	gi|529077962|ref|YP_008376965.1|	-	0.0048	16.2	1.8	0.016	14.5	1.8	1.8	1	1	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
ELFV_dehydrog	PF00208.21	gi|529077962|ref|YP_008376965.1|	-	0.015	15.0	0.2	0.044	13.5	0.2	1.7	2	0	0	2	2	2	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
HATPase_c	PF02518.26	gi|529077963|ref|YP_008376966.1|	-	8.6e-17	61.7	0.0	1.8e-16	60.6	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|529077963|ref|YP_008376966.1|	-	2.7e-16	59.3	1.3	1e-15	57.5	0.4	2.5	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HAMP	PF00672.25	gi|529077963|ref|YP_008376966.1|	-	4.4e-10	39.8	5.8	5e-10	39.6	1.8	2.6	2	0	0	2	2	2	1	HAMP	domain
dCache_1	PF02743.18	gi|529077963|ref|YP_008376966.1|	-	2.4e-08	34.1	0.0	2.1e-07	31.0	0.1	2.4	2	1	0	2	2	2	1	Cache	domain
HATPase_c_2	PF13581.6	gi|529077963|ref|YP_008376966.1|	-	0.0061	16.5	0.2	0.021	14.8	0.1	2.1	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
Cep57_CLD_2	PF14197.6	gi|529077963|ref|YP_008376966.1|	-	0.053	13.6	0.9	0.21	11.7	0.9	2.0	1	0	0	1	1	1	0	Centrosome	localisation	domain	of	PPC89
CBM9_1	PF06452.11	gi|529077964|ref|YP_008376967.1|	-	1.3e-31	110.0	0.7	2.3e-31	109.1	0.7	1.4	1	0	0	1	1	1	1	Carbohydrate	family	9	binding	domain-like
Cellulase	PF00150.18	gi|529077964|ref|YP_008376967.1|	-	1.2e-24	87.3	0.3	3.1e-24	85.9	0.3	1.7	1	1	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
fn3	PF00041.21	gi|529077964|ref|YP_008376967.1|	-	1.4e-07	31.7	0.1	3.7e-07	30.4	0.1	1.7	1	0	0	1	1	1	1	Fibronectin	type	III	domain
TAT_signal	PF10518.9	gi|529077964|ref|YP_008376967.1|	-	0.46	10.4	2.6	0.9	9.5	2.6	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF4232	PF14016.6	gi|529077964|ref|YP_008376967.1|	-	2.2	8.5	7.3	0.82	9.8	2.8	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4232)
PAS_4	PF08448.10	gi|529077965|ref|YP_008376968.1|	-	2.3e-14	53.6	0.0	4.8e-14	52.5	0.0	1.6	1	0	0	1	1	1	1	PAS	fold
HisKA	PF00512.25	gi|529077965|ref|YP_008376968.1|	-	8.7e-14	51.3	0.7	2.7e-13	49.8	0.7	1.9	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c	PF02518.26	gi|529077965|ref|YP_008376968.1|	-	2.2e-13	50.7	0.0	3.9e-13	49.9	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Response_reg	PF00072.24	gi|529077965|ref|YP_008376968.1|	-	1.7e-12	47.5	0.0	4.7e-12	46.1	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
dCache_1	PF02743.18	gi|529077965|ref|YP_008376968.1|	-	0.018	14.8	0.1	0.036	13.9	0.1	1.4	1	0	0	1	1	1	0	Cache	domain
TBCA	PF02970.16	gi|529077965|ref|YP_008376968.1|	-	0.026	14.8	0.8	0.076	13.4	0.8	1.8	1	1	0	1	1	1	0	Tubulin	binding	cofactor	A
OKR_DC_1_N	PF03709.15	gi|529077965|ref|YP_008376968.1|	-	0.061	13.6	0.0	0.35	11.2	0.0	2.2	2	0	0	2	2	2	0	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
HATPase_c_2	PF13581.6	gi|529077965|ref|YP_008376968.1|	-	0.095	12.7	0.0	0.21	11.5	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
Ham1p_like	PF01725.16	gi|529077966|ref|YP_008376969.1|	-	1.1e-52	178.7	0.0	1.2e-52	178.5	0.0	1.0	1	0	0	1	1	1	1	Ham1	family
CBS	PF00571.28	gi|529077968|ref|YP_008376971.1|	-	5.8e-23	81.1	2.0	2.5e-10	40.6	0.1	2.3	2	0	0	2	2	2	2	CBS	domain
Peptidase_M50	PF02163.22	gi|529077968|ref|YP_008376971.1|	-	3.7e-14	52.6	7.8	9.7e-09	34.9	0.5	2.8	1	1	1	2	2	2	2	Peptidase	family	M50
2_5_RNA_ligase2	PF13563.6	gi|529077969|ref|YP_008376972.1|	-	1.1e-17	64.4	0.0	1.5e-17	63.9	0.0	1.3	1	1	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
LigT_PEase	PF02834.16	gi|529077969|ref|YP_008376972.1|	-	1.5e-09	37.9	0.1	0.0011	19.2	0.0	2.6	2	1	0	2	2	2	2	LigT	like	Phosphoesterase
AKAP7_NLS	PF10469.9	gi|529077969|ref|YP_008376972.1|	-	9.4e-08	32.2	0.0	1.2e-07	31.9	0.0	1.1	1	0	0	1	1	1	1	AKAP7	2'5'	RNA	ligase-like	domain
DUF4282	PF14110.6	gi|529077970|ref|YP_008376973.1|	-	0.34	11.7	6.3	0.42	11.4	6.3	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4282)
DUF5337	PF17272.2	gi|529077970|ref|YP_008376973.1|	-	3.1	7.7	5.6	9.8	6.1	0.3	2.1	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5337)
Arginosuc_synth	PF00764.19	gi|529077971|ref|YP_008376974.1|	-	1.9e-144	481.7	0.0	2.3e-144	481.5	0.0	1.0	1	0	0	1	1	1	1	Arginosuccinate	synthase
QueC	PF06508.13	gi|529077971|ref|YP_008376974.1|	-	2.2e-05	24.1	0.0	3.8e-05	23.3	0.0	1.4	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
Asn_synthase	PF00733.21	gi|529077971|ref|YP_008376974.1|	-	0.00094	18.9	0.0	0.0014	18.3	0.0	1.2	1	0	0	1	1	1	1	Asparagine	synthase
tRNA_Me_trans	PF03054.16	gi|529077971|ref|YP_008376974.1|	-	0.0038	16.1	0.0	0.0064	15.3	0.0	1.3	1	0	0	1	1	1	1	tRNA	methyl	transferase
NAD_synthase	PF02540.17	gi|529077971|ref|YP_008376974.1|	-	0.004	16.3	0.0	0.0054	15.9	0.0	1.2	1	0	0	1	1	1	1	NAD	synthase
Lyase_1	PF00206.20	gi|529077972|ref|YP_008376975.1|	-	1.8e-52	178.7	0.4	4.2e-52	177.5	0.0	1.7	2	0	0	2	2	2	1	Lyase
ASL_C2	PF14698.6	gi|529077972|ref|YP_008376975.1|	-	5.7e-16	59.0	2.5	5.7e-16	59.0	2.5	2.5	3	0	0	3	3	3	1	Argininosuccinate	lyase	C-terminal
DUF4226	PF10774.9	gi|529077972|ref|YP_008376975.1|	-	4	7.8	10.8	0.095	13.0	1.0	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4226)
RimK	PF08443.11	gi|529077974|ref|YP_008376977.1|	-	5.7e-20	71.7	0.0	5.1e-18	65.4	0.0	2.1	2	0	0	2	2	2	1	RimK-like	ATP-grasp	domain
GSH-S_ATP	PF02955.16	gi|529077974|ref|YP_008376977.1|	-	5.5e-09	35.7	0.0	8.5e-09	35.0	0.0	1.3	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|529077974|ref|YP_008376977.1|	-	9.7e-09	35.5	0.0	1.4e-08	35.0	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|529077974|ref|YP_008376977.1|	-	1.6e-06	27.8	0.0	2.2e-06	27.3	0.0	1.3	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp	PF02222.22	gi|529077974|ref|YP_008376977.1|	-	2.7e-05	23.8	0.0	0.00054	19.6	0.0	2.3	2	0	0	2	2	2	1	ATP-grasp	domain
ATP-grasp_5	PF13549.6	gi|529077974|ref|YP_008376977.1|	-	0.00012	21.6	0.0	0.0011	18.5	0.0	2.4	1	1	1	2	2	2	1	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|529077974|ref|YP_008376977.1|	-	0.0044	16.3	0.0	0.024	13.9	0.0	2.1	2	0	0	2	2	2	1	Sugar-transfer	associated	ATP-grasp
Semialdhyde_dh	PF01118.24	gi|529077975|ref|YP_008376978.1|	-	2.4e-29	102.2	0.0	4.4e-29	101.4	0.0	1.5	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.18	gi|529077975|ref|YP_008376978.1|	-	2.6e-07	30.9	0.0	4.7e-07	30.1	0.0	1.5	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
DapB_N	PF01113.20	gi|529077975|ref|YP_008376978.1|	-	0.01	16.0	0.0	0.023	14.8	0.0	1.6	1	1	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
AA_kinase	PF00696.28	gi|529077976|ref|YP_008376979.1|	-	2.4e-31	109.2	1.1	2.7e-30	105.8	1.1	1.9	1	1	0	1	1	1	1	Amino	acid	kinase	family
DUF1292	PF06949.11	gi|529077976|ref|YP_008376979.1|	-	0.14	13.1	0.3	0.14	13.1	0.3	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1292)
Aminotran_3	PF00202.21	gi|529077977|ref|YP_008376980.1|	-	8.2e-105	350.8	0.0	1e-104	350.5	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
Beta_elim_lyase	PF01212.21	gi|529077977|ref|YP_008376980.1|	-	0.059	12.6	0.0	0.095	12.0	0.0	1.3	1	0	0	1	1	1	0	Beta-eliminating	lyase
Peptidase_M20	PF01546.28	gi|529077978|ref|YP_008376981.1|	-	8.1e-24	84.5	0.1	1.1e-23	84.0	0.1	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|529077978|ref|YP_008376981.1|	-	1e-06	28.6	0.0	1.9e-06	27.8	0.0	1.5	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
OTCace_N	PF02729.21	gi|529077979|ref|YP_008376982.1|	-	3.7e-51	173.0	0.0	6.4e-51	172.3	0.0	1.4	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.24	gi|529077979|ref|YP_008376982.1|	-	7.6e-48	162.5	0.0	1.5e-47	161.6	0.0	1.5	2	0	0	2	2	2	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
PALP	PF00291.25	gi|529077981|ref|YP_008376984.1|	-	1.7e-71	241.1	2.1	2e-71	240.8	2.1	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
zf_UBZ	PF18439.1	gi|529077981|ref|YP_008376984.1|	-	0.26	10.9	1.3	21	4.8	0.1	2.5	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
2-Hacid_dh_C	PF02826.19	gi|529077982|ref|YP_008376985.1|	-	3.5e-33	114.5	0.0	5.8e-33	113.7	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|529077982|ref|YP_008376985.1|	-	4.9e-22	78.0	1.1	8.7e-22	77.2	1.1	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
ACT	PF01842.25	gi|529077982|ref|YP_008376985.1|	-	2e-06	27.4	4.4	0.00033	20.4	0.1	4.2	4	0	0	4	4	4	2	ACT	domain
DUF5555	PF17710.1	gi|529077982|ref|YP_008376985.1|	-	0.073	12.6	0.0	0.14	11.7	0.0	1.4	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5555)
CBS	PF00571.28	gi|529077984|ref|YP_008376987.1|	-	1.3e-28	99.2	15.1	3.8e-09	36.8	0.4	4.2	4	0	0	4	4	4	4	CBS	domain
HGTP_anticodon	PF03129.20	gi|529077985|ref|YP_008376988.1|	-	7.7e-22	77.3	0.0	1.7e-21	76.2	0.0	1.6	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|529077985|ref|YP_008376988.1|	-	3.3e-09	37.0	0.0	2.5e-08	34.1	0.0	2.1	2	0	0	2	2	2	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
zf-ribbon_3	PF13248.6	gi|529077985|ref|YP_008376988.1|	-	0.0087	15.4	0.5	1.7	8.1	0.0	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|529077985|ref|YP_008376988.1|	-	0.052	13.7	0.5	6.8	6.9	0.0	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
Mu-like_Com	PF10122.9	gi|529077985|ref|YP_008376988.1|	-	0.15	11.5	0.4	12	5.4	0.0	2.9	3	0	0	3	3	3	0	Mu-like	prophage	protein	Com
Prok-RING_1	PF14446.6	gi|529077985|ref|YP_008376988.1|	-	2.6	8.0	4.8	5.3	7.1	0.1	2.7	3	0	0	3	3	3	0	Prokaryotic	RING	finger	family	1
DUF348	PF03990.14	gi|529077985|ref|YP_008376988.1|	-	5.8	6.7	9.3	19	5.1	0.3	4.4	5	0	0	5	5	5	0	G5-linked-Ubiquitin-like	domain
Helicase_C	PF00271.31	gi|529077987|ref|YP_008376990.1|	-	1.2e-22	80.3	0.0	1.1e-21	77.3	0.0	2.3	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ERCC4	PF02732.15	gi|529077987|ref|YP_008376990.1|	-	8.2e-22	78.1	0.0	2.2e-21	76.7	0.0	1.8	1	0	0	1	1	1	1	ERCC4	domain
DEAD	PF00270.29	gi|529077987|ref|YP_008376990.1|	-	4.8e-15	55.8	0.0	1e-14	54.7	0.0	1.6	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
HHH_2	PF12826.7	gi|529077987|ref|YP_008376990.1|	-	1.3e-10	41.2	0.3	5.1e-10	39.3	0.3	2.0	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|529077987|ref|YP_008376990.1|	-	1.4e-10	41.6	0.1	6e-10	39.6	0.1	2.1	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
ResIII	PF04851.15	gi|529077987|ref|YP_008376990.1|	-	2.1e-10	40.9	0.0	4.2e-10	39.9	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
HHH	PF00633.23	gi|529077987|ref|YP_008376990.1|	-	1e-07	31.4	0.7	0.00021	21.0	0.2	3.0	2	0	0	2	2	2	2	Helix-hairpin-helix	motif
5_3_exonuc	PF01367.20	gi|529077987|ref|YP_008376990.1|	-	0.021	15.4	0.2	0.18	12.4	0.0	2.8	3	1	0	3	3	2	0	5'-3'	exonuclease,	C-terminal	SAM	fold
HopW1-1	PF15457.6	gi|529077987|ref|YP_008376990.1|	-	0.025	13.9	0.5	0.057	12.7	0.5	1.5	1	0	0	1	1	1	0	Type	III	T3SS	secreted	effector	HopW1-1/HopPmaA
DUF1800	PF08811.11	gi|529077987|ref|YP_008376990.1|	-	0.035	13.1	0.7	0.06	12.3	0.7	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1800)
RuvB_N	PF05496.12	gi|529077987|ref|YP_008376990.1|	-	0.046	13.5	0.0	0.097	12.4	0.0	1.5	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Helicase_C_2	PF13307.6	gi|529077987|ref|YP_008376990.1|	-	0.067	13.4	0.1	0.19	11.9	0.1	1.8	1	1	0	1	1	1	0	Helicase	C-terminal	domain
Bin3	PF06859.12	gi|529077987|ref|YP_008376990.1|	-	0.15	12.7	0.0	0.45	11.2	0.0	1.7	1	0	0	1	1	1	0	Bicoid-interacting	protein	3	(Bin3)
DUF4404	PF14357.6	gi|529077987|ref|YP_008376990.1|	-	1.6	9.4	6.5	2.2	9.0	0.1	3.7	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4404)
Bactofilin	PF04519.13	gi|529077989|ref|YP_008376992.1|	-	4.6e-13	49.3	8.3	1.6e-09	37.9	0.3	3.3	2	1	1	3	3	3	2	Polymer-forming	cytoskeletal
Hexapep	PF00132.24	gi|529077989|ref|YP_008376992.1|	-	4e-05	23.2	9.5	0.032	14.0	0.0	5.9	5	2	1	6	6	6	3	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|529077989|ref|YP_008376992.1|	-	0.015	15.0	4.2	0.92	9.3	0.0	4.3	4	1	0	4	4	4	0	Hexapeptide	repeat	of	succinyl-transferase
FapA	PF03961.13	gi|529077989|ref|YP_008376992.1|	-	0.49	8.9	2.3	1.3	7.5	0.8	1.9	2	0	0	2	2	2	0	Flagellar	Assembly	Protein	A
Phage_spike	PF18715.1	gi|529077989|ref|YP_008376992.1|	-	3	8.0	4.8	1.7	8.7	0.2	2.8	3	1	0	3	3	3	0	Phage	spike	trimer
MCPsignal	PF00015.21	gi|529077990|ref|YP_008376993.1|	-	8.3e-40	136.4	43.9	1.5e-37	129.1	20.8	3.1	2	1	1	3	3	2	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DUF948	PF06103.11	gi|529077990|ref|YP_008376993.1|	-	2.6e-08	34.0	35.6	0.031	14.5	0.3	6.5	3	2	3	6	6	6	2	Bacterial	protein	of	unknown	function	(DUF948)
DUF1664	PF07889.12	gi|529077990|ref|YP_008376993.1|	-	2e-05	24.6	30.1	0.0031	17.5	3.8	5.1	3	2	3	6	6	6	1	Protein	of	unknown	function	(DUF1664)
ApoLp-III	PF07464.11	gi|529077990|ref|YP_008376993.1|	-	0.00015	21.9	26.6	0.0067	16.5	6.8	3.1	2	1	1	3	3	2	2	Apolipophorin-III	precursor	(apoLp-III)
Laminin_II	PF06009.12	gi|529077990|ref|YP_008376993.1|	-	0.00025	21.1	30.9	0.0023	17.9	6.6	4.8	3	2	2	5	5	5	1	Laminin	Domain	II
Laminin_I	PF06008.14	gi|529077990|ref|YP_008376993.1|	-	0.00093	19.0	5.5	0.00093	19.0	5.5	3.5	3	2	1	4	4	4	1	Laminin	Domain	I
RasGAP_C	PF03836.15	gi|529077990|ref|YP_008376993.1|	-	0.00099	19.3	3.3	4.5	7.4	0.0	3.8	3	1	0	4	4	3	0	RasGAP	C-terminus
EzrA	PF06160.12	gi|529077990|ref|YP_008376993.1|	-	0.00099	17.4	28.3	0.041	12.1	11.9	3.4	3	1	0	3	3	3	2	Septation	ring	formation	regulator,	EzrA
Golgin_A5	PF09787.9	gi|529077990|ref|YP_008376993.1|	-	0.0011	18.6	8.4	0.0011	18.6	8.4	3.3	2	1	1	3	3	3	1	Golgin	subfamily	A	member	5
IFT57	PF10498.9	gi|529077990|ref|YP_008376993.1|	-	0.0027	16.8	22.3	0.013	14.5	1.0	3.3	3	1	1	4	4	4	2	Intra-flagellar	transport	protein	57
Baculo_PEP_C	PF04513.12	gi|529077990|ref|YP_008376993.1|	-	0.0031	17.6	19.0	0.038	14.0	1.9	4.5	2	1	1	4	4	4	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
NPV_P10	PF05531.12	gi|529077990|ref|YP_008376993.1|	-	0.0072	16.8	27.6	0.43	11.1	0.9	5.4	4	1	1	5	5	5	2	Nucleopolyhedrovirus	P10	protein
BLOC1_2	PF10046.9	gi|529077990|ref|YP_008376993.1|	-	0.012	15.9	27.7	0.11	12.8	0.5	5.4	4	2	1	5	5	5	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
TPR_MLP1_2	PF07926.12	gi|529077990|ref|YP_008376993.1|	-	0.04	14.0	36.6	0.068	13.2	0.4	4.0	3	2	0	3	3	3	0	TPR/MLP1/MLP2-like	protein
DUF3450	PF11932.8	gi|529077990|ref|YP_008376993.1|	-	0.055	12.8	29.7	1.9	7.7	0.0	4.2	2	1	1	4	4	4	0	Protein	of	unknown	function	(DUF3450)
DUF3150	PF11348.8	gi|529077990|ref|YP_008376993.1|	-	0.056	12.7	10.1	0.014	14.6	5.0	2.2	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3150)
Atg14	PF10186.9	gi|529077990|ref|YP_008376993.1|	-	0.056	12.5	12.0	0.52	9.3	0.9	3.2	2	1	0	3	3	3	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Fib_alpha	PF08702.10	gi|529077990|ref|YP_008376993.1|	-	0.061	13.5	23.9	0.068	13.3	1.5	4.4	3	2	2	5	5	5	0	Fibrinogen	alpha/beta	chain	family
YabA	PF06156.13	gi|529077990|ref|YP_008376993.1|	-	0.061	14.0	16.4	9.5	6.9	1.3	5.1	3	2	1	4	4	4	0	Initiation	control	protein	YabA
Sec34	PF04136.15	gi|529077990|ref|YP_008376993.1|	-	0.064	13.1	20.1	1.1	9.1	2.2	4.8	3	2	3	6	6	6	0	Sec34-like	family
DUF724	PF05266.14	gi|529077990|ref|YP_008376993.1|	-	0.071	12.9	21.5	1.3	8.9	6.4	3.8	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF724)
ANAPC4	PF12896.7	gi|529077990|ref|YP_008376993.1|	-	0.12	11.8	4.3	5.4	6.5	0.3	2.9	3	0	0	3	3	2	0	Anaphase-promoting	complex,	cyclosome,	subunit	4
CorA	PF01544.18	gi|529077990|ref|YP_008376993.1|	-	0.15	11.4	17.7	0.6	9.4	3.5	2.7	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
DUF4407	PF14362.6	gi|529077990|ref|YP_008376993.1|	-	0.16	11.3	0.0	0.16	11.3	0.0	3.2	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4407)
DivIC	PF04977.15	gi|529077990|ref|YP_008376993.1|	-	0.19	11.5	0.1	0.19	11.5	0.1	4.6	5	1	0	5	5	5	0	Septum	formation	initiator
Not3	PF04065.15	gi|529077990|ref|YP_008376993.1|	-	0.22	11.0	25.6	0.063	12.7	7.9	3.2	2	1	1	3	3	3	0	Not1	N-terminal	domain,	CCR4-Not	complex	component
Cep57_CLD_2	PF14197.6	gi|529077990|ref|YP_008376993.1|	-	0.23	11.6	4.8	0.16	12.1	1.5	2.5	2	0	0	2	2	1	0	Centrosome	localisation	domain	of	PPC89
CENP-H	PF05837.12	gi|529077990|ref|YP_008376993.1|	-	0.24	11.8	28.1	1.1	9.6	0.1	4.7	3	2	1	4	4	4	0	Centromere	protein	H	(CENP-H)
RPW8	PF05659.11	gi|529077990|ref|YP_008376993.1|	-	0.24	11.1	13.1	6	6.5	0.1	4.7	3	2	1	4	4	4	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
HAMP	PF00672.25	gi|529077990|ref|YP_008376993.1|	-	0.28	11.6	7.0	0.5	10.8	0.2	4.1	3	0	0	3	3	3	0	HAMP	domain
TRPM_tetra	PF16519.5	gi|529077990|ref|YP_008376993.1|	-	0.3	11.2	16.4	0.044	13.9	2.0	4.3	3	1	1	4	4	3	0	Tetramerisation	domain	of	TRPM
LOH1CR12	PF10158.9	gi|529077990|ref|YP_008376993.1|	-	0.31	11.0	11.0	6.2	6.9	1.1	3.9	3	2	1	4	4	4	0	Tumour	suppressor	protein
TMPIT	PF07851.13	gi|529077990|ref|YP_008376993.1|	-	0.34	10.1	16.7	0.39	9.9	2.0	3.6	2	1	1	4	4	4	0	TMPIT-like	protein
Prefoldin_2	PF01920.20	gi|529077990|ref|YP_008376993.1|	-	0.35	10.8	21.2	4	7.5	5.6	4.3	3	2	0	3	3	3	0	Prefoldin	subunit
UPF0242	PF06785.11	gi|529077990|ref|YP_008376993.1|	-	0.4	10.8	21.7	1.4	8.9	5.1	3.5	2	1	1	3	3	3	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Med30	PF11315.8	gi|529077990|ref|YP_008376993.1|	-	0.45	10.7	14.4	2.2	8.5	3.2	3.7	2	2	1	3	3	3	0	Mediator	complex	subunit	30
Mce4_CUP1	PF11887.8	gi|529077990|ref|YP_008376993.1|	-	0.46	9.9	13.1	0.046	13.2	1.4	2.8	2	2	0	2	2	2	0	Cholesterol	uptake	porter	CUP1	of	Mce4,	putative
Spc7	PF08317.11	gi|529077990|ref|YP_008376993.1|	-	0.55	9.0	33.7	3.4	6.5	8.8	3.9	2	1	2	4	4	4	0	Spc7	kinetochore	protein
YkyA	PF10368.9	gi|529077990|ref|YP_008376993.1|	-	0.56	9.9	35.6	1.2	8.8	13.0	3.8	1	1	1	3	3	3	0	Putative	cell-wall	binding	lipoprotein
ZapB	PF06005.12	gi|529077990|ref|YP_008376993.1|	-	0.61	10.6	0.1	0.61	10.6	0.1	5.0	2	1	1	3	3	2	0	Cell	division	protein	ZapB
BAR_3	PF16746.5	gi|529077990|ref|YP_008376993.1|	-	0.65	9.7	15.0	0.17	11.5	1.6	3.3	2	2	1	3	3	3	0	BAR	domain	of	APPL	family
SlyX	PF04102.12	gi|529077990|ref|YP_008376993.1|	-	0.67	10.6	19.3	4.3	8.0	1.0	5.4	4	2	1	5	5	5	0	SlyX
Seryl_tRNA_N	PF02403.22	gi|529077990|ref|YP_008376993.1|	-	0.71	10.1	26.9	1.4	9.2	6.5	5.2	3	2	3	6	6	6	0	Seryl-tRNA	synthetase	N-terminal	domain
COMP	PF11598.8	gi|529077990|ref|YP_008376993.1|	-	0.85	10.1	5.0	8.1	7.0	1.4	3.0	2	0	0	2	2	2	0	Cartilage	oligomeric	matrix	protein
DUF5082	PF16888.5	gi|529077990|ref|YP_008376993.1|	-	0.86	9.9	25.3	0.61	10.4	0.3	4.9	2	1	4	6	6	5	0	Domain	of	unknown	function	(DUF5082)
APG17	PF04108.12	gi|529077990|ref|YP_008376993.1|	-	0.93	8.5	33.7	4.5	6.3	0.1	4.6	2	1	0	3	3	3	0	Autophagy	protein	Apg17
DUF16	PF01519.16	gi|529077990|ref|YP_008376993.1|	-	1.1	9.8	23.1	15	6.2	7.6	4.7	3	2	1	4	4	4	0	Protein	of	unknown	function	DUF16
Cauli_AT	PF03233.13	gi|529077990|ref|YP_008376993.1|	-	1.2	9.0	10.9	17	5.3	1.6	4.1	2	1	3	5	5	5	0	Aphid	transmission	protein
DUF812	PF05667.11	gi|529077990|ref|YP_008376993.1|	-	1.3	7.8	35.3	1	8.2	14.4	3.3	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF812)
DASH_Dad2	PF08654.10	gi|529077990|ref|YP_008376993.1|	-	1.4	9.4	26.7	4.6	7.7	6.3	4.4	2	1	2	4	4	4	0	DASH	complex	subunit	Dad2
Tup_N	PF08581.10	gi|529077990|ref|YP_008376993.1|	-	1.7	9.0	12.0	3.2	8.1	0.8	3.9	4	0	0	4	4	3	0	Tup	N-terminal
RmuC	PF02646.16	gi|529077990|ref|YP_008376993.1|	-	2.2	7.4	25.1	1.2	8.2	2.3	4.9	3	2	2	5	5	5	0	RmuC	family
Occludin_ELL	PF07303.13	gi|529077990|ref|YP_008376993.1|	-	2.3	9.0	10.7	6.2	7.6	1.4	4.5	3	2	2	5	5	4	0	Occludin	homology	domain
USP8_interact	PF08941.10	gi|529077990|ref|YP_008376993.1|	-	2.3	8.0	11.5	1.8	8.3	1.7	3.5	3	1	1	4	4	4	0	USP8	interacting
AATF-Che1	PF13339.6	gi|529077990|ref|YP_008376993.1|	-	2.7	8.7	19.1	0.97	10.1	4.4	2.9	2	1	0	3	3	2	0	Apoptosis	antagonizing	transcription	factor
DUF2935	PF11155.8	gi|529077990|ref|YP_008376993.1|	-	4.9	7.5	6.6	2.8e+02	1.9	6.5	3.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF2935)
WXG100	PF06013.12	gi|529077990|ref|YP_008376993.1|	-	6.4	7.1	30.5	8.4	6.7	3.0	7.0	3	3	5	8	8	8	0	Proteins	of	100	residues	with	WXG
Barstar	PF01337.18	gi|529077990|ref|YP_008376993.1|	-	7.3	6.7	8.4	4.2	7.5	0.1	4.1	3	1	1	4	4	4	0	Barstar	(barnase	inhibitor)
COG2	PF06148.11	gi|529077990|ref|YP_008376993.1|	-	8.6	6.5	26.3	7.9	6.6	1.2	5.6	3	2	3	6	6	6	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
COG5	PF10392.9	gi|529077990|ref|YP_008376993.1|	-	9.1	6.5	13.1	14	5.8	0.9	3.8	2	1	0	3	3	3	0	Golgi	transport	complex	subunit	5
IFT46_B_C	PF12317.8	gi|529077990|ref|YP_008376993.1|	-	9.6	5.9	15.6	11	5.7	4.2	3.1	1	1	2	3	3	3	0	Intraflagellar	transport	complex	B	protein	46	C	terminal
V_ATPase_I	PF01496.19	gi|529077990|ref|YP_008376993.1|	-	9.7	4.0	23.8	1.2	6.9	8.6	2.2	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
TPP_enzyme_C	PF02775.21	gi|529077991|ref|YP_008376994.1|	-	3.3e-29	101.6	0.1	5.2e-29	101.0	0.1	1.3	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
DXP_synthase_N	PF13292.6	gi|529077991|ref|YP_008376994.1|	-	0.018	14.3	0.3	0.058	12.6	0.2	1.6	1	1	1	2	2	2	0	1-deoxy-D-xylulose-5-phosphate	synthase
DegV	PF02645.16	gi|529077991|ref|YP_008376994.1|	-	0.18	11.1	0.0	0.34	10.2	0.0	1.4	1	0	0	1	1	1	0	Uncharacterised	protein,	DegV	family	COG1307
POR_N	PF01855.19	gi|529077992|ref|YP_008376995.1|	-	8.9e-68	228.5	0.5	1.2e-67	228.1	0.5	1.1	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
PFOR_II	PF17147.4	gi|529077992|ref|YP_008376995.1|	-	4.9e-26	91.0	0.0	9.8e-26	90.0	0.0	1.5	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_C	PF02780.20	gi|529077992|ref|YP_008376995.1|	-	0.00077	19.3	0.0	0.0028	17.5	0.0	2.0	1	1	0	1	1	1	1	Transketolase,	C-terminal	domain
Fer4	PF00037.27	gi|529077993|ref|YP_008376996.1|	-	1.7e-15	56.1	17.2	2.2e-09	36.7	4.0	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|529077993|ref|YP_008376996.1|	-	2.7e-14	53.5	31.9	6.8e-09	36.2	11.0	1.9	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|529077993|ref|YP_008376996.1|	-	2.5e-12	46.8	8.0	3.3e-12	46.3	8.0	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|529077993|ref|YP_008376996.1|	-	1e-10	41.2	16.3	7.2e-06	25.8	3.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|529077993|ref|YP_008376996.1|	-	1.1e-10	41.0	11.8	4e-05	23.5	1.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|529077993|ref|YP_008376996.1|	-	1.6e-10	41.0	20.6	2.7e-08	33.8	10.0	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|529077993|ref|YP_008376996.1|	-	1.5e-09	37.8	22.3	5e-07	29.7	12.9	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|529077993|ref|YP_008376996.1|	-	7.7e-08	32.8	4.1	0.00052	20.5	0.2	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|529077993|ref|YP_008376996.1|	-	2.1e-07	31.7	13.1	6.9e-05	23.7	2.5	2.4	2	1	1	3	3	3	3	4Fe-4S	double	cluster	binding	domain
Fer4_22	PF17179.4	gi|529077993|ref|YP_008376996.1|	-	3.4e-07	31.0	4.4	0.00083	20.2	0.2	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|529077993|ref|YP_008376996.1|	-	1.4e-05	25.4	11.6	0.015	15.7	2.2	2.2	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|529077993|ref|YP_008376996.1|	-	4.5e-05	23.6	14.0	0.0083	16.6	3.5	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|529077993|ref|YP_008376996.1|	-	0.00014	22.5	14.5	0.0077	17.0	2.2	2.8	2	1	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_3	PF12798.7	gi|529077993|ref|YP_008376996.1|	-	0.001	19.8	16.9	0.046	14.7	5.2	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|529077993|ref|YP_008376996.1|	-	0.0036	17.8	14.3	0.19	12.3	4.6	2.3	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_18	PF13746.6	gi|529077993|ref|YP_008376996.1|	-	0.72	10.1	9.9	3.3	7.9	2.1	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
POR	PF01558.18	gi|529077994|ref|YP_008376997.1|	-	6.1e-41	140.4	0.2	7.1e-41	140.2	0.2	1.0	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
HlyD	PF00529.20	gi|529077994|ref|YP_008376997.1|	-	0.074	12.9	0.0	0.16	11.9	0.0	1.5	1	0	0	1	1	1	0	HlyD	membrane-fusion	protein	of	T1SS
HAD_2	PF13419.6	gi|529077995|ref|YP_008376998.1|	-	6.9e-18	65.3	0.0	9e-18	65.0	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|529077995|ref|YP_008376998.1|	-	7.3e-12	46.0	0.0	1.1e-09	39.0	0.0	2.2	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|529077995|ref|YP_008376998.1|	-	1.2e-11	44.5	0.2	2.4e-11	43.5	0.1	1.6	2	0	0	2	2	2	1	HAD-hyrolase-like
HAD	PF12710.7	gi|529077995|ref|YP_008376998.1|	-	0.0098	16.3	0.4	0.018	15.5	0.4	1.5	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
NT5C	PF06941.12	gi|529077995|ref|YP_008376998.1|	-	0.028	14.3	0.0	0.12	12.2	0.0	1.8	1	1	1	2	2	2	0	5'	nucleotidase,	deoxy	(Pyrimidine),	cytosolic	type	C	protein	(NT5C)
Glyco_hydro_10	PF00331.20	gi|529077996|ref|YP_008376999.1|	-	1.2e-94	317.0	0.0	1.4e-94	316.8	0.0	1.0	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	10
Cellulase	PF00150.18	gi|529077996|ref|YP_008376999.1|	-	0.071	12.5	0.0	2.8	7.3	0.0	2.3	2	0	0	2	2	2	0	Cellulase	(glycosyl	hydrolase	family	5)
PBP	PF01161.20	gi|529077997|ref|YP_008377000.1|	-	9.3e-35	119.8	0.1	1.1e-34	119.6	0.1	1.0	1	0	0	1	1	1	1	Phosphatidylethanolamine-binding	protein
PK	PF00224.21	gi|529077998|ref|YP_008377001.1|	-	4.1e-111	371.2	1.6	6.5e-111	370.6	1.6	1.2	1	0	0	1	1	1	1	Pyruvate	kinase,	barrel	domain
PK_C	PF02887.16	gi|529077998|ref|YP_008377001.1|	-	3e-31	108.1	0.9	7e-31	106.9	0.9	1.7	1	0	0	1	1	1	1	Pyruvate	kinase,	alpha/beta	domain
PEP-utilizers	PF00391.23	gi|529077998|ref|YP_008377001.1|	-	1.3e-06	28.0	0.6	5.5e-06	26.0	0.3	2.4	2	0	0	2	2	2	1	PEP-utilising	enzyme,	mobile	domain
HpcH_HpaI	PF03328.14	gi|529077998|ref|YP_008377001.1|	-	0.017	14.2	0.7	0.053	12.6	0.6	1.9	1	1	1	2	2	2	0	HpcH/HpaI	aldolase/citrate	lyase	family
ROK	PF00480.20	gi|529077999|ref|YP_008377002.1|	-	2.7e-47	161.7	0.1	3.2e-47	161.5	0.1	1.0	1	0	0	1	1	1	1	ROK	family
BcrAD_BadFG	PF01869.20	gi|529077999|ref|YP_008377002.1|	-	0.00035	20.2	0.1	0.00059	19.4	0.1	1.4	1	0	0	1	1	1	1	BadF/BadG/BcrA/BcrD	ATPase	family
FGGY_N	PF00370.21	gi|529077999|ref|YP_008377002.1|	-	0.0015	18.2	0.0	0.0054	16.3	0.0	1.8	1	1	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
AAA_16	PF13191.6	gi|529078000|ref|YP_008377003.1|	-	4.2e-11	43.5	0.0	9.8e-11	42.3	0.0	1.6	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|529078000|ref|YP_008377003.1|	-	2.4e-07	31.1	0.0	4.7e-07	30.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
DUF2075	PF09848.9	gi|529078000|ref|YP_008377003.1|	-	0.0057	15.9	0.0	0.025	13.8	0.0	1.8	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
AAA	PF00004.29	gi|529078000|ref|YP_008377003.1|	-	0.0073	16.7	0.0	0.013	15.9	0.0	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_11	PF13086.6	gi|529078000|ref|YP_008377003.1|	-	0.051	13.4	0.0	0.082	12.7	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
Sigma54_activ_2	PF14532.6	gi|529078000|ref|YP_008377003.1|	-	0.089	12.9	0.0	0.17	12.0	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_19	PF13245.6	gi|529078000|ref|YP_008377003.1|	-	0.1	12.9	0.0	0.21	11.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AFG1_ATPase	PF03969.16	gi|529078000|ref|YP_008377003.1|	-	0.12	11.2	0.0	0.19	10.6	0.0	1.3	1	0	0	1	1	1	0	AFG1-like	ATPase
RNA_helicase	PF00910.22	gi|529078000|ref|YP_008377003.1|	-	0.2	12.1	0.0	0.33	11.4	0.0	1.3	1	0	0	1	1	1	0	RNA	helicase
Bacillus_PapR	PF05968.11	gi|529078001|ref|YP_008377004.1|	-	2.7	7.9	7.8	0.26	11.2	0.5	2.7	2	0	0	2	2	2	0	Bacillus	PapR	protein
FGGY_N	PF00370.21	gi|529078002|ref|YP_008377005.1|	-	9.7e-75	251.3	0.0	1.4e-74	250.8	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
FGGY_C	PF02782.16	gi|529078002|ref|YP_008377005.1|	-	1.3e-56	191.5	1.9	3.6e-56	190.0	0.5	2.0	2	0	0	2	2	2	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
BcrAD_BadFG	PF01869.20	gi|529078002|ref|YP_008377005.1|	-	2e-05	24.2	0.4	0.0023	17.5	0.0	2.2	2	0	0	2	2	2	2	BadF/BadG/BcrA/BcrD	ATPase	family
DAO	PF01266.24	gi|529078003|ref|YP_008377006.1|	-	1e-48	166.7	1.8	1.5e-48	166.2	1.8	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Fer2_BFD	PF04324.15	gi|529078003|ref|YP_008377006.1|	-	5.7e-12	45.8	1.7	1.6e-11	44.4	1.7	1.8	1	0	0	1	1	1	1	BFD-like	[2Fe-2S]	binding	domain
Pyr_redox_2	PF07992.14	gi|529078003|ref|YP_008377006.1|	-	3.9e-06	26.3	0.3	1.3e-05	24.6	0.3	1.8	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|529078003|ref|YP_008377006.1|	-	9.9e-06	24.9	5.6	0.00016	20.9	5.6	2.1	1	1	0	1	1	1	1	FAD	binding	domain
DAO_C	PF16901.5	gi|529078003|ref|YP_008377006.1|	-	0.00059	19.7	0.0	0.0057	16.5	0.0	2.5	3	0	0	3	3	3	1	C-terminal	domain	of	alpha-glycerophosphate	oxidase
NAD_binding_8	PF13450.6	gi|529078003|ref|YP_008377006.1|	-	0.0018	18.4	0.8	0.024	14.9	1.0	2.5	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.19	gi|529078003|ref|YP_008377006.1|	-	0.012	14.9	1.1	0.042	13.1	0.1	2.0	2	0	0	2	2	2	0	FAD	binding	domain
3HCDH_N	PF02737.18	gi|529078003|ref|YP_008377006.1|	-	0.013	15.4	0.4	0.022	14.6	0.4	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
FAD_oxidored	PF12831.7	gi|529078003|ref|YP_008377006.1|	-	0.015	14.7	0.6	0.032	13.6	0.6	1.6	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|529078003|ref|YP_008377006.1|	-	0.02	13.6	0.2	0.03	13.0	0.2	1.2	1	0	0	1	1	1	0	HI0933-like	protein
Pyr_redox_3	PF13738.6	gi|529078003|ref|YP_008377006.1|	-	0.022	14.0	0.2	0.036	13.3	0.2	1.2	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|529078003|ref|YP_008377006.1|	-	0.042	14.4	0.7	0.14	12.8	0.7	1.9	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|529078003|ref|YP_008377006.1|	-	0.23	10.5	1.0	0.4	9.7	1.0	1.3	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.24	gi|529078004|ref|YP_008377007.1|	-	2.3e-32	112.6	4.1	2.8e-32	112.3	4.1	1.1	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|529078004|ref|YP_008377007.1|	-	8.2e-07	28.5	0.0	1.5e-05	24.4	0.1	2.3	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|529078004|ref|YP_008377007.1|	-	9e-05	21.7	0.4	9e-05	21.7	0.4	1.8	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
DAO	PF01266.24	gi|529078004|ref|YP_008377007.1|	-	0.00011	21.9	5.0	0.0003	20.5	5.0	2.0	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|529078004|ref|YP_008377007.1|	-	0.00092	18.7	2.3	0.00092	18.7	2.3	1.5	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|529078004|ref|YP_008377007.1|	-	0.0025	17.1	0.4	0.0045	16.3	0.4	1.4	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
HI0933_like	PF03486.14	gi|529078004|ref|YP_008377007.1|	-	0.007	15.1	0.5	0.011	14.4	0.5	1.3	1	0	0	1	1	1	1	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|529078004|ref|YP_008377007.1|	-	0.0088	16.2	0.9	0.028	14.6	0.9	1.9	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.19	gi|529078004|ref|YP_008377007.1|	-	0.017	14.4	0.9	0.026	13.8	0.9	1.2	1	0	0	1	1	1	0	FAD	binding	domain
NAD_binding_7	PF13241.6	gi|529078004|ref|YP_008377007.1|	-	0.021	15.3	0.0	0.051	14.0	0.0	1.7	2	0	0	2	2	2	0	Putative	NAD(P)-binding
Pyr_redox	PF00070.27	gi|529078004|ref|YP_008377007.1|	-	0.028	15.0	0.3	0.094	13.3	0.3	1.9	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|529078004|ref|YP_008377007.1|	-	0.085	12.7	0.3	0.13	12.1	0.3	1.2	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
CCG	PF02754.16	gi|529078005|ref|YP_008377008.1|	-	1.7e-23	82.6	3.6	9.3e-12	45.0	0.1	3.0	3	0	0	3	3	3	2	Cysteine-rich	domain
Fer4_17	PF13534.6	gi|529078005|ref|YP_008377008.1|	-	8.9e-08	32.6	9.3	1.5e-07	31.8	2.1	3.6	3	1	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|529078005|ref|YP_008377008.1|	-	2.5e-07	31.0	2.3	2.5e-07	31.0	2.3	3.1	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|529078005|ref|YP_008377008.1|	-	0.00039	20.9	8.2	0.12	12.9	0.2	3.5	4	0	0	4	4	4	2	4Fe-4S	dicluster	domain
zf-CSL	PF05207.13	gi|529078005|ref|YP_008377008.1|	-	0.001	18.7	8.6	0.0095	15.6	0.0	3.8	4	0	0	4	4	4	2	CSL	zinc	finger
Fer4_10	PF13237.6	gi|529078005|ref|YP_008377008.1|	-	0.027	14.6	14.1	0.45	10.7	1.4	3.7	3	1	2	5	5	5	0	4Fe-4S	dicluster	domain
DUF3390	PF11870.8	gi|529078005|ref|YP_008377008.1|	-	0.028	14.8	1.1	0.064	13.6	1.1	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3390)
Fer4_9	PF13187.6	gi|529078005|ref|YP_008377008.1|	-	0.082	13.1	10.1	0.11	12.7	6.4	3.0	3	1	0	3	3	3	0	4Fe-4S	dicluster	domain
DDE_Tnp_ISAZ013	PF07592.11	gi|529078005|ref|YP_008377008.1|	-	0.092	11.7	0.0	0.17	10.8	0.0	1.4	1	0	0	1	1	1	0	Rhodopirellula	transposase	DDE	domain
PEPcase	PF00311.17	gi|529078006|ref|YP_008377009.1|	-	4e-232	772.7	0.0	5.4e-232	772.2	0.0	1.1	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxylase
PEPcase_2	PF14010.6	gi|529078006|ref|YP_008377009.1|	-	0.0097	14.5	0.0	0.018	13.5	0.0	1.4	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxylase
PVL_ORF50	PF07768.11	gi|529078006|ref|YP_008377009.1|	-	0.25	11.7	1.3	1	9.7	0.1	2.7	3	0	0	3	3	3	0	PVL	ORF-50-like	family
HTH_10	PF04967.12	gi|529078007|ref|YP_008377010.1|	-	4.5e-15	55.2	0.1	8e-15	54.4	0.1	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_30	PF13556.6	gi|529078007|ref|YP_008377010.1|	-	5.7e-05	22.8	0.1	0.00013	21.7	0.1	1.6	1	0	0	1	1	1	1	PucR	C-terminal	helix-turn-helix	domain
MarR_2	PF12802.7	gi|529078007|ref|YP_008377010.1|	-	0.00045	20.1	0.1	0.0012	18.7	0.1	1.8	1	0	0	1	1	1	1	MarR	family
HTH_8	PF02954.19	gi|529078007|ref|YP_008377010.1|	-	0.013	15.3	0.0	0.027	14.3	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
HTH_psq	PF05225.16	gi|529078007|ref|YP_008377010.1|	-	0.013	15.2	2.4	0.018	14.7	0.1	2.4	2	1	0	2	2	2	0	helix-turn-helix,	Psq	domain
HTH_24	PF13412.6	gi|529078007|ref|YP_008377010.1|	-	0.02	14.5	0.0	0.042	13.4	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|529078007|ref|YP_008377010.1|	-	0.034	14.2	0.3	0.11	12.6	0.1	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|529078007|ref|YP_008377010.1|	-	0.049	13.4	0.1	0.21	11.4	0.0	2.1	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|529078007|ref|YP_008377010.1|	-	0.052	13.4	0.0	0.12	12.3	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Phage_CI_repr	PF07022.13	gi|529078007|ref|YP_008377010.1|	-	0.064	13.3	0.0	0.13	12.4	0.0	1.4	1	0	0	1	1	1	0	Bacteriophage	CI	repressor	helix-turn-helix	domain
FG-GAP_2	PF14312.6	gi|529078008|ref|YP_008377011.1|	-	1.6e-102	335.6	62.5	4.6e-16	58.8	3.0	7.2	7	0	0	7	7	7	7	FG-GAP	repeat
Kelch_3	PF13415.6	gi|529078008|ref|YP_008377011.1|	-	4.5e-06	26.8	10.6	0.47	10.8	0.0	6.3	5	1	1	6	6	6	3	Galactose	oxidase,	central	domain
DUF3598	PF12204.8	gi|529078008|ref|YP_008377011.1|	-	0.14	11.7	0.0	0.31	10.5	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3598)
E1-E2_ATPase	PF00122.20	gi|529078009|ref|YP_008377012.1|	-	3.6e-53	179.8	0.7	9e-53	178.5	0.7	1.7	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|529078009|ref|YP_008377012.1|	-	5e-41	141.3	8.2	1.1e-40	140.2	8.2	1.6	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|529078009|ref|YP_008377012.1|	-	7.2e-14	52.0	0.3	2.7e-13	50.2	0.0	2.2	2	0	0	2	2	2	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|529078009|ref|YP_008377012.1|	-	0.0011	18.8	0.5	0.0022	17.8	0.5	1.4	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|529078009|ref|YP_008377012.1|	-	0.0013	19.2	0.8	0.0067	16.8	0.4	2.4	2	1	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
PAS_4	PF08448.10	gi|529078010|ref|YP_008377013.1|	-	1.1e-43	147.9	6.7	4.3e-19	68.8	0.4	3.6	3	0	0	3	3	3	3	PAS	fold
PAS_9	PF13426.7	gi|529078010|ref|YP_008377013.1|	-	6.4e-37	126.0	0.2	1.1e-14	54.6	0.0	3.4	3	0	0	3	3	3	3	PAS	domain
PAS	PF00989.25	gi|529078010|ref|YP_008377013.1|	-	6.2e-32	109.9	0.1	5e-15	55.5	0.0	3.5	3	0	0	3	3	3	3	PAS	fold
PAS_8	PF13188.7	gi|529078010|ref|YP_008377013.1|	-	3.2e-28	97.2	1.7	2.8e-13	49.6	0.0	4.1	5	0	0	5	5	4	3	PAS	domain
PAS_3	PF08447.12	gi|529078010|ref|YP_008377013.1|	-	1e-15	57.8	0.0	1.1e-06	28.9	0.0	3.5	3	0	0	3	3	3	3	PAS	fold
HATPase_c	PF02518.26	gi|529078010|ref|YP_008377013.1|	-	6e-12	46.1	0.0	1.6e-11	44.7	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|529078010|ref|YP_008377013.1|	-	6.1e-08	32.7	0.0	1.8e-07	31.1	0.0	1.8	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_7	PF12860.7	gi|529078010|ref|YP_008377013.1|	-	4.6e-07	30.0	0.9	0.019	15.1	0.0	4.3	3	1	0	3	3	3	2	PAS	fold
PAS_10	PF13596.6	gi|529078010|ref|YP_008377013.1|	-	5.7e-05	23.6	0.0	0.0005	20.6	0.0	2.5	3	0	0	3	3	2	1	PAS	domain
PHA-1	PF06542.11	gi|529078010|ref|YP_008377013.1|	-	0.004	16.0	0.0	0.0068	15.3	0.0	1.3	1	0	0	1	1	1	1	Regulator	protein	PHA-1
HATPase_c_3	PF13589.6	gi|529078010|ref|YP_008377013.1|	-	0.0073	16.1	0.1	0.019	14.8	0.0	1.7	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|529078010|ref|YP_008377013.1|	-	0.099	12.7	0.0	0.099	12.7	0.0	2.6	3	0	0	3	3	3	0	His	Kinase	A	(phospho-acceptor)	domain
Neuropep_like	PF15161.6	gi|529078010|ref|YP_008377013.1|	-	0.13	12.0	0.1	0.36	10.5	0.0	1.8	2	0	0	2	2	2	0	Neuropeptide-like
TMP-TENI	PF02581.17	gi|529078011|ref|YP_008377014.1|	-	1.8e-60	203.4	2.7	2.1e-60	203.2	2.7	1.0	1	0	0	1	1	1	1	Thiamine	monophosphate	synthase
NMO	PF03060.15	gi|529078011|ref|YP_008377014.1|	-	2.7e-07	30.3	6.3	3.2e-07	30.1	6.3	1.0	1	0	0	1	1	1	1	Nitronate	monooxygenase
ThiG	PF05690.14	gi|529078011|ref|YP_008377014.1|	-	0.00063	19.1	5.2	0.00063	19.1	5.2	1.7	1	1	1	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
NanE	PF04131.14	gi|529078011|ref|YP_008377014.1|	-	0.0078	15.4	2.9	0.049	12.8	1.9	2.4	2	1	0	2	2	2	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
DHO_dh	PF01180.21	gi|529078011|ref|YP_008377014.1|	-	0.018	14.3	1.2	0.026	13.7	1.2	1.2	1	0	0	1	1	1	0	Dihydroorotate	dehydrogenase
DUF561	PF04481.12	gi|529078011|ref|YP_008377014.1|	-	0.05	12.8	0.1	0.11	11.6	0.1	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF561)
DUF123	PF01986.16	gi|529078012|ref|YP_008377015.1|	-	8.3e-29	99.9	0.0	1.1e-28	99.6	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF123
FeoA	PF04023.14	gi|529078013|ref|YP_008377016.1|	-	3e-09	37.0	0.7	3.8e-09	36.7	0.7	1.1	1	0	0	1	1	1	1	FeoA	domain
FeoB_N	PF02421.18	gi|529078014|ref|YP_008377017.1|	-	2.5e-50	170.0	0.1	3.8e-50	169.5	0.1	1.3	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
Gate	PF07670.14	gi|529078014|ref|YP_008377017.1|	-	3.5e-16	59.5	12.1	9.4e-11	42.0	3.4	2.7	2	0	0	2	2	2	2	Nucleoside	recognition
MMR_HSR1	PF01926.23	gi|529078014|ref|YP_008377017.1|	-	6.3e-16	58.5	0.1	5.5e-15	55.4	0.0	2.1	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
FeoB_C	PF07664.12	gi|529078014|ref|YP_008377017.1|	-	6.5e-10	38.6	0.1	6.5e-10	38.6	0.1	3.6	3	1	1	4	4	4	1	Ferrous	iron	transport	protein	B	C	terminus
GTP_EFTU	PF00009.27	gi|529078014|ref|YP_008377017.1|	-	0.03	13.9	0.0	0.06	12.9	0.0	1.5	1	0	0	1	1	1	0	Elongation	factor	Tu	GTP	binding	domain
UPF0547	PF10571.9	gi|529078015|ref|YP_008377018.1|	-	0.028	14.5	13.9	0.13	12.4	6.8	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DZR	PF12773.7	gi|529078015|ref|YP_008377018.1|	-	0.22	11.6	12.0	0.41	10.7	12.0	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
Zn-ribbon_8	PF09723.10	gi|529078015|ref|YP_008377018.1|	-	0.23	11.6	13.0	0.63	10.2	6.8	2.6	1	1	0	2	2	2	0	Zinc	ribbon	domain
CpXC	PF14353.6	gi|529078015|ref|YP_008377018.1|	-	0.27	11.3	6.2	0.4	10.7	1.2	2.2	2	0	0	2	2	2	0	CpXC	protein
zf-ribbon_3	PF13248.6	gi|529078015|ref|YP_008377018.1|	-	0.44	10.0	14.1	0.6	9.6	9.3	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Opy2	PF09463.10	gi|529078015|ref|YP_008377018.1|	-	0.61	10.5	16.3	0.41	11.0	10.1	2.1	2	0	0	2	2	2	0	Opy2	protein
zf-Mss51	PF13824.6	gi|529078015|ref|YP_008377018.1|	-	1.2	9.3	9.9	2.3	8.4	9.9	1.7	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Zn_Tnp_IS1595	PF12760.7	gi|529078015|ref|YP_008377018.1|	-	1.6	8.7	15.0	0.33	10.9	8.3	2.2	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
A2L_zn_ribbon	PF08792.10	gi|529078015|ref|YP_008377018.1|	-	1.8	8.4	0.1	1.8	8.4	0.1	3.1	3	0	0	3	3	3	0	A2L	zinc	ribbon	domain
HypA	PF01155.19	gi|529078015|ref|YP_008377018.1|	-	2.3	8.3	10.4	2.9	7.9	8.3	1.8	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
YacG	PF03884.14	gi|529078015|ref|YP_008377018.1|	-	3.9	7.3	11.9	4.5	7.1	0.3	2.5	2	1	1	3	3	3	0	DNA	gyrase	inhibitor	YacG
zf-TFIIB	PF13453.6	gi|529078015|ref|YP_008377018.1|	-	3.9	6.9	14.9	7.2	6.0	0.3	3.1	2	1	0	2	2	2	0	Transcription	factor	zinc-finger
zf_UBZ	PF18439.1	gi|529078015|ref|YP_008377018.1|	-	4	7.1	14.9	0.5	10.0	0.9	3.1	1	1	2	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
zinc_ribbon_2	PF13240.6	gi|529078015|ref|YP_008377018.1|	-	5.9	6.8	13.6	0.36	10.6	5.9	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
Rhomboid	PF01694.22	gi|529078016|ref|YP_008377019.1|	-	7.7e-27	94.1	8.0	7.7e-27	94.1	8.0	1.4	2	0	0	2	2	2	1	Rhomboid	family
DUF1751	PF08551.10	gi|529078016|ref|YP_008377019.1|	-	2e-06	28.3	0.2	2e-06	28.3	0.2	2.5	3	0	0	3	3	3	1	Eukaryotic	integral	membrane	protein	(DUF1751)
URO-D	PF01208.17	gi|529078016|ref|YP_008377019.1|	-	0.17	11.0	0.1	0.24	10.5	0.1	1.2	1	0	0	1	1	1	0	Uroporphyrinogen	decarboxylase	(URO-D)
Phage_holin_5_2	PF16079.5	gi|529078016|ref|YP_008377019.1|	-	0.4	11.0	6.3	3.2	8.2	1.7	3.1	3	0	0	3	3	3	0	Phage	holin	family	Hol44,	in	holin	superfamily	V
RNase_H_2	PF13482.6	gi|529078017|ref|YP_008377020.1|	-	5e-35	120.9	0.1	6.5e-35	120.6	0.1	1.1	1	0	0	1	1	1	1	RNase_H	superfamily
DNA_pol_A_exo1	PF01612.20	gi|529078017|ref|YP_008377020.1|	-	0.0041	16.8	0.1	0.0088	15.8	0.1	1.5	1	1	0	1	1	1	1	3'-5'	exonuclease
DUF5051	PF16473.5	gi|529078017|ref|YP_008377020.1|	-	0.02	14.9	0.0	1.4	8.9	0.0	2.2	1	1	1	2	2	2	0	3'	exoribonuclease,	RNase	T-like
DNA_pol_B_exo2	PF10108.9	gi|529078017|ref|YP_008377020.1|	-	0.049	13.3	0.0	0.14	11.8	0.0	1.8	2	0	0	2	2	2	0	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
RNase_T	PF00929.24	gi|529078017|ref|YP_008377020.1|	-	0.099	13.2	0.2	7	7.2	0.1	2.3	1	1	1	2	2	2	0	Exonuclease
DUF294_C	PF10335.9	gi|529078018|ref|YP_008377021.1|	-	0.025	14.4	0.0	0.053	13.3	0.0	1.4	1	0	0	1	1	1	0	Putative	nucleotidyltransferase	substrate	binding	domain
PSK_trans_fac	PF07704.11	gi|529078019|ref|YP_008377022.1|	-	0.016	15.9	2.5	0.032	15.0	2.5	1.7	1	1	0	1	1	1	0	Rv0623-like	transcription	factor
RHH_1	PF01402.21	gi|529078019|ref|YP_008377022.1|	-	0.026	14.5	1.9	0.084	12.8	0.3	2.3	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
VapB_antitoxin	PF09957.9	gi|529078019|ref|YP_008377022.1|	-	0.034	14.1	1.3	0.052	13.5	0.3	1.8	2	0	0	2	2	2	0	Bacterial	antitoxin	of	type	II	TA	system,	VapB
RNA_binding	PF01877.17	gi|529078019|ref|YP_008377022.1|	-	0.072	13.4	0.0	0.091	13.0	0.0	1.3	1	0	0	1	1	1	0	RNA	binding
DUF3523	PF12037.8	gi|529078019|ref|YP_008377022.1|	-	0.076	12.4	0.2	0.099	12.0	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3523)
DUF1707	PF08044.11	gi|529078019|ref|YP_008377022.1|	-	0.29	11.2	7.6	6.8	6.8	2.7	2.7	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF1707)
Cas_Cas6	PF01881.16	gi|529078020|ref|YP_008377023.1|	-	6.7e-21	75.4	0.0	8.5e-21	75.0	0.0	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas6
Cas_TM1802	PF09484.10	gi|529078021|ref|YP_008377024.1|	-	1.6e-18	66.8	0.0	8.8e-11	41.3	0.0	2.1	2	0	0	2	2	2	2	CRISPR-associated	protein	TM1802	(cas_TM1802)
Cas_Cas7	PF05107.12	gi|529078022|ref|YP_008377025.1|	-	1.9e-45	155.4	0.0	2.2e-45	155.2	0.0	1.1	1	0	0	1	1	1	1	CRISPR-associated	protein	Cas7
Cas_Cas5d	PF09704.10	gi|529078023|ref|YP_008377026.1|	-	1.3e-10	41.6	0.1	6.1e-10	39.3	0.0	1.9	1	1	1	2	2	2	1	CRISPR-associated	protein	(Cas_Cas5)
ResIII	PF04851.15	gi|529078024|ref|YP_008377027.1|	-	1.1e-08	35.2	0.0	2.5e-08	34.1	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
HD_6	PF18019.1	gi|529078024|ref|YP_008377027.1|	-	3e-08	34.0	0.3	8e-08	32.6	0.0	1.8	2	0	0	2	2	2	1	HD	domain
DEAD	PF00270.29	gi|529078024|ref|YP_008377027.1|	-	3.5e-05	23.7	0.1	0.00011	22.0	0.0	1.8	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
HD	PF01966.22	gi|529078024|ref|YP_008377027.1|	-	0.00077	19.7	0.1	0.0021	18.3	0.1	1.8	1	0	0	1	1	1	1	HD	domain
Helicase_C	PF00271.31	gi|529078024|ref|YP_008377027.1|	-	0.011	16.0	0.0	0.086	13.2	0.0	2.3	1	1	0	1	1	1	0	Helicase	conserved	C-terminal	domain
PhoH	PF02562.16	gi|529078024|ref|YP_008377027.1|	-	0.11	11.9	0.0	1.1	8.7	0.0	2.2	2	0	0	2	2	2	0	PhoH-like	protein
Cas_Cas4	PF01930.17	gi|529078025|ref|YP_008377028.1|	-	4.7e-46	156.9	0.0	5.4e-46	156.7	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.7	gi|529078025|ref|YP_008377028.1|	-	1.1e-06	28.8	0.1	1.3e-06	28.5	0.1	1.1	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
Cas_Cas1	PF01867.16	gi|529078026|ref|YP_008377029.1|	-	3.7e-86	288.8	0.0	4.3e-86	288.6	0.0	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
CRISPR_Cas2	PF09827.9	gi|529078027|ref|YP_008377030.1|	-	3.1e-17	62.5	0.1	3.6e-17	62.3	0.1	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas2
Cas_Cas2CT1978	PF09707.10	gi|529078027|ref|YP_008377030.1|	-	0.00024	21.1	0.0	0.00026	21.0	0.0	1.1	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_Cas2CT1978)
RecR	PF02132.15	gi|529078029|ref|YP_008377032.1|	-	0.048	13.2	0.8	0.067	12.8	0.8	1.2	1	0	0	1	1	1	0	RecR	protein
OrfB_Zn_ribbon	PF07282.11	gi|529078029|ref|YP_008377032.1|	-	0.078	12.9	2.0	0.21	11.5	2.0	1.7	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
polyprenyl_synt	PF00348.17	gi|529078029|ref|YP_008377032.1|	-	0.17	10.9	0.1	0.2	10.7	0.1	1.1	1	0	0	1	1	1	0	Polyprenyl	synthetase
zf-ribbon_3	PF13248.6	gi|529078029|ref|YP_008377032.1|	-	0.42	10.1	5.6	2.1	7.9	5.3	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|529078029|ref|YP_008377032.1|	-	0.66	10.1	4.9	0.35	11.0	0.5	2.1	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-C2H2_3	PF13878.6	gi|529078029|ref|YP_008377032.1|	-	3.7	7.4	6.6	6	6.8	1.0	2.2	1	1	1	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
HTH_20	PF12840.7	gi|529078030|ref|YP_008377033.1|	-	2.4e-08	33.9	0.4	2.4e-08	33.9	0.4	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|529078030|ref|YP_008377033.1|	-	1.7e-07	30.9	0.3	2.8e-07	30.3	0.3	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|529078030|ref|YP_008377033.1|	-	1.3e-05	25.0	0.1	2.1e-05	24.3	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|529078030|ref|YP_008377033.1|	-	1.4e-05	24.9	0.1	2.2e-05	24.3	0.1	1.2	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|529078030|ref|YP_008377033.1|	-	5e-05	23.0	0.1	8.5e-05	22.3	0.1	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|529078030|ref|YP_008377033.1|	-	8.6e-05	22.4	0.1	0.00014	21.8	0.1	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_24	PF13412.6	gi|529078030|ref|YP_008377033.1|	-	9e-05	21.9	0.0	0.00017	21.1	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
FUR	PF01475.19	gi|529078030|ref|YP_008377033.1|	-	0.0002	21.5	0.1	0.00025	21.2	0.1	1.3	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
PadR	PF03551.14	gi|529078030|ref|YP_008377033.1|	-	0.00042	20.2	0.0	0.00063	19.7	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
ArsR	PF09824.9	gi|529078030|ref|YP_008377033.1|	-	0.0012	18.5	0.0	0.0016	18.1	0.0	1.1	1	0	0	1	1	1	1	ArsR	transcriptional	regulator
Plk4_PB1	PF18190.1	gi|529078030|ref|YP_008377033.1|	-	0.0016	18.6	0.0	0.0019	18.3	0.0	1.3	1	0	0	1	1	1	1	Polo-like	Kinase	4	Polo	Box	1
HTH_AsnC-type	PF13404.6	gi|529078030|ref|YP_008377033.1|	-	0.0045	16.8	0.1	0.0075	16.1	0.1	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
MarR	PF01047.22	gi|529078030|ref|YP_008377033.1|	-	0.0075	16.2	0.1	0.017	15.1	0.0	1.6	2	0	0	2	2	2	1	MarR	family
TFIIE_alpha	PF02002.17	gi|529078030|ref|YP_008377033.1|	-	0.011	15.6	0.1	0.013	15.3	0.1	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
Fe_dep_repress	PF01325.19	gi|529078030|ref|YP_008377033.1|	-	0.012	15.8	0.3	0.11	12.7	0.1	2.3	2	1	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DprA_WH	PF17782.1	gi|529078030|ref|YP_008377033.1|	-	0.087	13.0	0.6	0.13	12.4	0.6	1.3	1	0	0	1	1	1	0	DprA	winged	helix	domain
HTH_22	PF13309.6	gi|529078030|ref|YP_008377033.1|	-	0.11	12.6	0.0	0.19	11.8	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
HTH_28	PF13518.6	gi|529078030|ref|YP_008377033.1|	-	0.14	12.3	0.0	0.23	11.6	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Urocanase	PF01175.18	gi|529078030|ref|YP_008377033.1|	-	0.2	11.3	0.0	0.2	11.3	0.0	1.1	1	0	0	1	1	1	0	Urocanase	Rossmann-like	domain
CPP1-like	PF11833.8	gi|529078031|ref|YP_008377034.1|	-	0.17	11.5	2.4	0.2	11.3	2.4	1.1	1	0	0	1	1	1	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
DUF2157	PF09925.9	gi|529078031|ref|YP_008377034.1|	-	0.17	11.6	2.7	0.23	11.3	2.6	1.3	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2157)
DUF2206	PF09971.9	gi|529078031|ref|YP_008377034.1|	-	0.27	9.9	5.1	0.28	9.9	5.1	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2206)
ISK_Channel	PF02060.15	gi|529078031|ref|YP_008377034.1|	-	0.64	9.8	4.0	4.1	7.1	0.1	2.1	1	1	1	2	2	2	0	Slow	voltage-gated	potassium	channel
TraL	PF07178.11	gi|529078031|ref|YP_008377034.1|	-	5.2	7.6	6.6	22	5.6	0.3	2.6	1	1	1	2	2	2	0	TraL	protein
UvrD-helicase	PF00580.21	gi|529078032|ref|YP_008377035.1|	-	1.1e-25	90.9	0.0	1.4e-24	87.2	0.0	2.2	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
AAA_19	PF13245.6	gi|529078032|ref|YP_008377035.1|	-	2.3e-22	79.9	0.0	4.9e-22	78.8	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
UvrD_C	PF13361.6	gi|529078032|ref|YP_008377035.1|	-	4.9e-15	55.7	0.0	3.5e-09	36.5	0.0	2.3	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
UvrD_C_2	PF13538.6	gi|529078032|ref|YP_008377035.1|	-	3.8e-09	36.2	0.2	0.0029	17.4	0.0	2.7	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_30	PF13604.6	gi|529078032|ref|YP_008377035.1|	-	7.6e-07	29.0	0.1	0.00037	20.3	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
Viral_helicase1	PF01443.18	gi|529078032|ref|YP_008377035.1|	-	8e-05	22.5	0.0	2.2	8.0	0.0	3.7	4	0	0	4	4	4	2	Viral	(Superfamily	1)	RNA	helicase
Herpes_ori_bp	PF02399.15	gi|529078032|ref|YP_008377035.1|	-	0.0071	14.5	0.0	0.01	13.9	0.0	1.1	1	0	0	1	1	1	1	Origin	of	replication	binding	protein
AAA_22	PF13401.6	gi|529078032|ref|YP_008377035.1|	-	0.0098	16.2	0.0	0.4	11.0	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
AAA_11	PF13086.6	gi|529078032|ref|YP_008377035.1|	-	0.015	15.1	0.0	0.023	14.5	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_17	PF13207.6	gi|529078032|ref|YP_008377035.1|	-	0.034	14.6	3.4	2	8.8	0.3	3.7	2	1	0	3	3	3	0	AAA	domain
Lig_C	PF18330.1	gi|529078033|ref|YP_008377036.1|	-	6.8e-42	142.4	0.1	1.1e-41	141.8	0.1	1.3	1	0	0	1	1	1	1	Ligase	Pab1020	C-terminal	region
RNA_ligase	PF09414.10	gi|529078033|ref|YP_008377036.1|	-	4.8e-16	59.5	0.0	8.1e-16	58.7	0.0	1.3	1	0	0	1	1	1	1	RNA	ligase
ATP-synt_D	PF01813.17	gi|529078034|ref|YP_008377037.1|	-	5.7e-54	182.9	10.4	7e-54	182.6	10.4	1.1	1	0	0	1	1	1	1	ATP	synthase	subunit	D
Laminin_I	PF06008.14	gi|529078034|ref|YP_008377037.1|	-	0.003	17.3	0.2	0.003	17.3	0.2	2.6	2	1	0	2	2	2	1	Laminin	Domain	I
Ead_Ea22	PF13935.6	gi|529078034|ref|YP_008377037.1|	-	0.062	14.0	12.2	0.053	14.2	7.2	2.1	1	1	1	2	2	2	0	Ead/Ea22-like	protein
BCD	PF15461.6	gi|529078035|ref|YP_008377038.1|	-	2.5e-76	256.7	17.0	3e-76	256.4	17.0	1.1	1	0	0	1	1	1	1	Beta-carotene	15,15'-dioxygenase
DUF5353	PF17304.2	gi|529078036|ref|YP_008377039.1|	-	0.0051	16.5	0.6	0.0061	16.3	0.6	1.2	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5353)
PMT_2	PF13231.6	gi|529078036|ref|YP_008377039.1|	-	0.0073	16.5	1.7	0.0082	16.4	1.7	1.0	1	0	0	1	1	1	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
ABC_tran	PF00005.27	gi|529078037|ref|YP_008377040.1|	-	3.1e-28	99.0	0.0	4.7e-28	98.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529078037|ref|YP_008377040.1|	-	4.5e-11	43.1	0.9	6.5e-06	26.2	0.0	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|529078037|ref|YP_008377040.1|	-	2.9e-06	27.9	0.0	7.1e-06	26.7	0.0	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_23	PF13476.6	gi|529078037|ref|YP_008377040.1|	-	0.0007	20.2	0.0	0.0014	19.2	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|529078037|ref|YP_008377040.1|	-	0.00088	19.0	0.8	0.003	17.3	0.6	1.9	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|529078037|ref|YP_008377040.1|	-	0.0038	16.7	0.2	0.17	11.3	0.2	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|529078037|ref|YP_008377040.1|	-	0.0073	16.7	0.1	0.016	15.6	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_28	PF13521.6	gi|529078037|ref|YP_008377040.1|	-	0.031	14.5	0.4	0.075	13.3	0.1	1.8	2	1	0	2	2	2	0	AAA	domain
DLIC	PF05783.11	gi|529078037|ref|YP_008377040.1|	-	0.034	13.0	0.1	0.065	12.1	0.0	1.4	2	0	0	2	2	2	0	Dynein	light	intermediate	chain	(DLIC)
AAA	PF00004.29	gi|529078037|ref|YP_008377040.1|	-	0.036	14.5	0.4	0.089	13.2	0.1	1.9	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_30	PF13604.6	gi|529078037|ref|YP_008377040.1|	-	0.067	12.9	2.0	0.11	12.2	0.2	2.0	2	0	0	2	2	2	0	AAA	domain
5_3_exonuc_N	PF02739.16	gi|529078037|ref|YP_008377040.1|	-	0.076	12.9	0.4	0.83	9.5	0.2	2.2	2	0	0	2	2	2	0	5'-3'	exonuclease,	N-terminal	resolvase-like	domain
AAA_19	PF13245.6	gi|529078037|ref|YP_008377040.1|	-	0.077	13.3	0.4	0.24	11.7	0.3	1.8	1	1	0	2	2	2	0	AAA	domain
NTPase_1	PF03266.15	gi|529078037|ref|YP_008377040.1|	-	0.1	12.5	1.0	0.16	11.9	0.2	1.7	2	0	0	2	2	2	0	NTPase
AAA_27	PF13514.6	gi|529078037|ref|YP_008377040.1|	-	0.12	12.0	0.0	0.22	11.1	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
ATP-synt_ab	PF00006.25	gi|529078039|ref|YP_008377042.1|	-	1.2e-62	211.4	0.0	1.7e-62	210.9	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_N	PF02874.23	gi|529078039|ref|YP_008377042.1|	-	2.1e-14	53.8	0.5	2.1e-14	53.8	0.5	1.7	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
HAS-barrel	PF09378.10	gi|529078039|ref|YP_008377042.1|	-	0.00088	19.4	0.4	0.0037	17.4	0.4	2.2	1	0	0	1	1	1	1	HAS	barrel	domain
Styelin	PF17562.2	gi|529078039|ref|YP_008377042.1|	-	0.099	13.0	0.2	10	6.5	0.0	2.7	2	0	0	2	2	2	0	Styelin
ATP-synt_ab	PF00006.25	gi|529078040|ref|YP_008377043.1|	-	2.3e-92	308.5	0.0	3.1e-92	308.0	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_Xtn	PF16886.5	gi|529078040|ref|YP_008377043.1|	-	1.6e-39	134.5	0.0	2.8e-39	133.7	0.0	1.4	1	0	0	1	1	1	1	ATPsynthase	alpha/beta	subunit	N-term	extension
ATP-synt_ab_N	PF02874.23	gi|529078040|ref|YP_008377043.1|	-	3.5e-11	43.5	4.1	3.5e-11	43.5	4.1	2.4	3	0	0	3	3	3	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
AAA_22	PF13401.6	gi|529078040|ref|YP_008377043.1|	-	0.026	14.8	0.0	0.067	13.5	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
Peptidase_M23	PF01551.22	gi|529078040|ref|YP_008377043.1|	-	0.067	13.4	0.2	1.4	9.2	0.0	2.6	3	0	0	3	3	3	0	Peptidase	family	M23
ATP-synt_F	PF01990.17	gi|529078041|ref|YP_008377044.1|	-	1.6e-15	57.1	0.1	1.9e-15	57.0	0.1	1.0	1	0	0	1	1	1	1	ATP	synthase	(F/14-kDa)	subunit
vATP-synt_AC39	PF01992.16	gi|529078042|ref|YP_008377045.1|	-	2e-79	267.6	5.8	2.2e-79	267.4	5.8	1.0	1	0	0	1	1	1	1	ATP	synthase	(C/AC39)	subunit
AntA	PF08346.12	gi|529078042|ref|YP_008377045.1|	-	0.12	13.0	0.0	0.32	11.6	0.0	1.8	1	0	0	1	1	1	0	AntA/AntB	antirepressor
vATP-synt_E	PF01991.18	gi|529078043|ref|YP_008377046.1|	-	1.5e-37	129.0	15.4	1.8e-37	128.7	15.4	1.1	1	0	0	1	1	1	1	ATP	synthase	(E/31	kDa)	subunit
DivIVA	PF05103.13	gi|529078043|ref|YP_008377046.1|	-	0.0017	18.4	12.2	0.0017	18.4	12.2	3.2	3	1	1	4	4	4	1	DivIVA	protein
V-ATPase_G_2	PF16999.5	gi|529078043|ref|YP_008377046.1|	-	0.002	18.5	23.8	0.002	18.5	23.8	1.8	1	1	1	2	2	2	1	Vacuolar	(H+)-ATPase	G	subunit
DUF3552	PF12072.8	gi|529078043|ref|YP_008377046.1|	-	0.0033	16.9	20.7	0.0051	16.2	20.7	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3552)
Exonuc_VII_L	PF02601.15	gi|529078043|ref|YP_008377046.1|	-	0.14	11.7	4.2	0.18	11.4	4.2	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
HrpE	PF06188.12	gi|529078043|ref|YP_008377046.1|	-	0.55	10.1	12.7	1.6	8.5	12.7	1.6	1	1	0	1	1	1	0	HrpE/YscL/FliH	and	V-type	ATPase	subunit	E
ATP-synt_B	PF00430.18	gi|529078043|ref|YP_008377046.1|	-	1	9.5	26.1	1.5	8.9	25.4	1.6	1	1	0	1	1	1	0	ATP	synthase	B/B'	CF(0)
Mt_ATP-synt_B	PF05405.14	gi|529078043|ref|YP_008377046.1|	-	1.4	8.6	8.5	2.2	7.9	8.5	1.4	1	0	0	1	1	1	0	Mitochondrial	ATP	synthase	B	chain	precursor	(ATP-synt_B)
DUF3801	PF12687.7	gi|529078043|ref|YP_008377046.1|	-	3	7.9	12.7	21	5.1	11.4	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3801)
YtxH	PF12732.7	gi|529078043|ref|YP_008377046.1|	-	5.3	7.6	10.1	3.1	8.4	4.5	2.7	2	1	0	2	2	2	0	YtxH-like	protein
GrpE	PF01025.19	gi|529078043|ref|YP_008377046.1|	-	6.6	6.4	15.9	45	3.7	15.9	2.0	1	1	0	1	1	1	0	GrpE
Atg14	PF10186.9	gi|529078043|ref|YP_008377046.1|	-	7.7	5.5	7.7	9.4	5.2	7.7	1.1	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
ATP-synt_C	PF00137.21	gi|529078044|ref|YP_008377047.1|	-	5.5e-12	45.9	8.6	6.6e-12	45.6	8.6	1.1	1	0	0	1	1	1	1	ATP	synthase	subunit	C
V_ATPase_I	PF01496.19	gi|529078045|ref|YP_008377048.1|	-	4.8e-23	81.0	18.3	2.4e-13	49.0	0.5	4.4	5	1	0	5	5	5	3	V-type	ATPase	116kDa	subunit	family
KfrA_N	PF11740.8	gi|529078045|ref|YP_008377048.1|	-	0.0013	19.4	5.7	0.76	10.5	0.4	2.8	2	0	0	2	2	2	2	Plasmid	replication	region	DNA-binding	N-term
Tnp_22_trimer	PF17489.2	gi|529078045|ref|YP_008377048.1|	-	0.0037	17.2	2.6	0.18	11.8	0.2	2.4	2	0	0	2	2	2	1	L1	transposable	element	trimerization	domain
Prefoldin_2	PF01920.20	gi|529078045|ref|YP_008377048.1|	-	0.014	15.4	1.8	4.5	7.3	0.5	2.3	2	0	0	2	2	2	0	Prefoldin	subunit
FlaC_arch	PF05377.11	gi|529078045|ref|YP_008377048.1|	-	0.015	15.7	1.0	4.6	7.7	0.2	2.5	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
APG6_N	PF17675.1	gi|529078045|ref|YP_008377048.1|	-	0.025	15.1	7.9	0.91	10.1	0.6	2.2	2	0	0	2	2	2	0	Apg6	coiled-coil	region
BBS2_C	PF14782.6	gi|529078045|ref|YP_008377048.1|	-	0.029	13.2	0.4	0.33	9.6	0.0	2.0	2	0	0	2	2	2	0	Ciliary	BBSome	complex	subunit	2,	C-terminal
DUF4140	PF13600.6	gi|529078045|ref|YP_008377048.1|	-	0.043	14.3	3.0	2.7	8.5	0.6	2.5	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
Spc24	PF08286.11	gi|529078045|ref|YP_008377048.1|	-	0.08	13.2	1.8	0.62	10.3	0.0	2.2	2	0	0	2	2	2	0	Spc24	subunit	of	Ndc80
DegS	PF05384.11	gi|529078045|ref|YP_008377048.1|	-	0.2	11.1	6.2	0.95	8.9	0.2	2.2	2	0	0	2	2	2	0	Sensor	protein	DegS
TMF_DNA_bd	PF12329.8	gi|529078045|ref|YP_008377048.1|	-	0.34	11.0	2.9	9.1	6.4	0.2	2.2	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
ATG16	PF08614.11	gi|529078045|ref|YP_008377048.1|	-	0.5	10.6	4.0	9.8	6.3	0.1	2.1	2	0	0	2	2	2	0	Autophagy	protein	16	(ATG16)
DivIC	PF04977.15	gi|529078045|ref|YP_008377048.1|	-	0.51	10.1	1.7	4.1	7.2	0.1	2.5	2	0	0	2	2	2	0	Septum	formation	initiator
Tektin	PF03148.14	gi|529078045|ref|YP_008377048.1|	-	0.76	8.5	2.3	6	5.5	0.1	2.1	2	0	0	2	2	2	0	Tektin	family
DHR10	PF18595.1	gi|529078045|ref|YP_008377048.1|	-	1.2	9.3	8.8	5	7.2	1.4	2.2	2	0	0	2	2	2	0	Designed	helical	repeat	protein	10	domain
HSCB_C	PF07743.13	gi|529078045|ref|YP_008377048.1|	-	1.2	9.7	8.9	2.5	8.7	0.3	3.1	3	0	0	3	3	3	0	HSCB	C-terminal	oligomerisation	domain
Syntaxin-6_N	PF09177.11	gi|529078045|ref|YP_008377048.1|	-	1.5	9.4	5.1	2.7	8.6	0.8	2.5	2	1	0	2	2	2	0	Syntaxin	6,	N-terminal
TPR_MLP1_2	PF07926.12	gi|529078045|ref|YP_008377048.1|	-	1.7	8.7	5.1	8	6.5	0.3	2.2	2	0	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
TMF_TATA_bd	PF12325.8	gi|529078045|ref|YP_008377048.1|	-	1.7	8.9	6.2	12	6.1	0.3	2.3	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
CENP-F_leu_zip	PF10473.9	gi|529078045|ref|YP_008377048.1|	-	2.7	8.0	8.2	9.8	6.2	1.0	2.2	2	0	0	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
V-ATPase_G	PF03179.15	gi|529078046|ref|YP_008377049.1|	-	3.7e-06	27.4	20.7	4.6e-06	27.1	20.7	1.1	1	0	0	1	1	1	1	Vacuolar	(H+)-ATPase	G	subunit
ATP-synt_B	PF00430.18	gi|529078046|ref|YP_008377049.1|	-	2.7e-05	24.3	24.4	2.7e-05	24.3	24.4	1.9	1	1	1	2	2	2	1	ATP	synthase	B/B'	CF(0)
HrpE	PF06188.12	gi|529078046|ref|YP_008377049.1|	-	0.0011	18.9	14.4	0.0026	17.7	14.4	1.6	1	1	0	1	1	1	1	HrpE/YscL/FliH	and	V-type	ATPase	subunit	E
DUF883	PF05957.13	gi|529078046|ref|YP_008377049.1|	-	0.02	15.5	21.6	0.26	11.9	8.3	2.0	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
V-ATPase_G_2	PF16999.5	gi|529078046|ref|YP_008377049.1|	-	0.04	14.3	31.4	0.081	13.3	31.4	1.5	1	1	0	1	1	1	0	Vacuolar	(H+)-ATPase	G	subunit
YtxH	PF12732.7	gi|529078046|ref|YP_008377049.1|	-	0.11	13.1	11.6	71	4.0	11.6	2.5	1	1	0	1	1	1	0	YtxH-like	protein
DUF3552	PF12072.8	gi|529078046|ref|YP_008377049.1|	-	0.14	11.6	28.4	0.28	10.6	21.6	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3552)
Env-gp36	PF09590.10	gi|529078046|ref|YP_008377049.1|	-	0.18	10.2	0.5	0.18	10.2	0.5	1.0	1	0	0	1	1	1	0	Lentivirus	surface	glycoprotein
DivIVA	PF05103.13	gi|529078046|ref|YP_008377049.1|	-	0.44	10.6	19.9	0.83	9.7	14.9	2.1	1	1	1	2	2	2	0	DivIVA	protein
Exonuc_VII_L	PF02601.15	gi|529078046|ref|YP_008377049.1|	-	0.46	10.0	6.6	0.53	9.8	6.6	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
PIN_8	PF18476.1	gi|529078046|ref|YP_008377049.1|	-	0.75	9.6	7.5	0.87	9.4	7.5	1.1	1	0	0	1	1	1	0	PIN	like	domain
Atg14	PF10186.9	gi|529078046|ref|YP_008377049.1|	-	1	8.4	10.0	1.2	8.2	10.0	1.1	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
zf-C4H2	PF10146.9	gi|529078046|ref|YP_008377049.1|	-	1.1	9.5	9.7	1.6	9.0	9.7	1.3	1	0	0	1	1	1	0	Zinc	finger-containing	protein
Phage_Mu_Gam	PF07352.12	gi|529078046|ref|YP_008377049.1|	-	1.7	8.6	16.7	29	4.5	16.4	2.1	1	1	0	1	1	1	0	Bacteriophage	Mu	Gam	like	protein
Hydantoinase_A	PF01968.18	gi|529078046|ref|YP_008377049.1|	-	2.1	7.6	4.6	2.4	7.3	4.6	1.1	1	0	0	1	1	1	0	Hydantoinase/oxoprolinase
Rotamase	PF00639.21	gi|529078046|ref|YP_008377049.1|	-	2.1	9.4	13.7	3.7	8.6	3.2	2.7	1	1	2	3	3	3	0	PPIC-type	PPIASE	domain
vATP-synt_E	PF01991.18	gi|529078046|ref|YP_008377049.1|	-	2.6	7.4	25.8	5.4	6.4	25.8	1.7	1	1	0	1	1	1	0	ATP	synthase	(E/31	kDa)	subunit
DUF3347	PF11827.8	gi|529078046|ref|YP_008377049.1|	-	3.6	7.7	8.1	5	7.3	7.9	1.2	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3347)
OmpH	PF03938.14	gi|529078046|ref|YP_008377049.1|	-	3.9	7.8	15.0	5.8	7.2	15.0	1.3	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
Caudo_TAP	PF02413.17	gi|529078046|ref|YP_008377049.1|	-	5.9	7.1	14.6	15	5.8	8.9	2.3	1	1	1	2	2	2	0	Caudovirales	tail	fibre	assembly	protein,	lambda	gpK
HSP70	PF00012.20	gi|529078046|ref|YP_008377049.1|	-	6	4.9	12.7	6.9	4.7	12.7	1.0	1	0	0	1	1	1	0	Hsp70	protein
Remorin_C	PF03763.13	gi|529078046|ref|YP_008377049.1|	-	6.5	6.7	23.3	1.6	8.7	11.5	2.1	1	1	1	2	2	2	0	Remorin,	C-terminal	region
TSP_NTD	PF17804.1	gi|529078046|ref|YP_008377049.1|	-	6.9	6.9	8.8	46	4.2	9.0	1.8	1	1	0	1	1	1	0	Tail	specific	protease	N-terminal	domain
Methyltransf_11	PF08241.12	gi|529078047|ref|YP_008377050.1|	-	4e-26	91.5	0.0	9.8e-26	90.2	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|529078047|ref|YP_008377050.1|	-	8.6e-23	80.9	0.0	1.4e-22	80.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|529078047|ref|YP_008377050.1|	-	8.7e-20	71.1	0.0	1e-19	70.8	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|529078047|ref|YP_008377050.1|	-	5.3e-17	62.1	0.0	7.5e-17	61.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|529078047|ref|YP_008377050.1|	-	9.3e-16	58.4	0.0	1.4e-15	57.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|529078047|ref|YP_008377050.1|	-	2.9e-15	56.2	0.0	4.2e-12	45.9	0.0	2.0	1	1	1	2	2	2	2	ubiE/COQ5	methyltransferase	family
Methyltransf_9	PF08003.11	gi|529078047|ref|YP_008377050.1|	-	8.5e-06	24.9	0.0	1.1e-05	24.5	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
PCMT	PF01135.19	gi|529078047|ref|YP_008377050.1|	-	4.4e-05	23.3	0.0	5.6e-05	23.0	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MetW	PF07021.12	gi|529078047|ref|YP_008377050.1|	-	5.7e-05	22.8	0.0	7.8e-05	22.4	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
RrnaAD	PF00398.20	gi|529078047|ref|YP_008377050.1|	-	0.00032	19.9	0.0	0.00034	19.8	0.0	1.3	1	1	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_29	PF03141.16	gi|529078047|ref|YP_008377050.1|	-	0.00069	18.3	0.0	0.001	17.7	0.0	1.2	1	1	0	1	1	1	1	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
Methyltransf_24	PF13578.6	gi|529078047|ref|YP_008377050.1|	-	0.017	16.1	0.0	0.042	14.9	0.0	1.6	2	0	0	2	2	1	0	Methyltransferase	domain
CMAS	PF02353.20	gi|529078047|ref|YP_008377050.1|	-	0.023	14.0	0.0	0.028	13.7	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Methyltransf_2	PF00891.18	gi|529078047|ref|YP_008377050.1|	-	0.032	13.5	0.0	0.056	12.7	0.0	1.4	1	1	0	1	1	1	0	O-methyltransferase	domain
Methyltransf_8	PF05148.15	gi|529078047|ref|YP_008377050.1|	-	0.044	13.6	0.0	0.075	12.9	0.0	1.5	1	1	0	1	1	1	0	Hypothetical	methyltransferase
MTS	PF05175.14	gi|529078047|ref|YP_008377050.1|	-	0.049	13.2	0.0	0.083	12.4	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	small	domain
Pilin_N	PF07790.11	gi|529078048|ref|YP_008377051.1|	-	3.6e-13	50.2	4.2	3.6e-13	50.2	4.2	2.0	2	1	0	2	2	2	1	Archaeal	Type	IV	pilin,	N-terminal
HTH_IclR	PF09339.10	gi|529078050|ref|YP_008377053.1|	-	0.0073	16.1	0.5	0.054	13.3	0.0	2.6	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
SpoIIIAH	PF12685.7	gi|529078050|ref|YP_008377053.1|	-	0.013	15.4	0.4	0.021	14.6	0.4	1.4	1	0	0	1	1	1	0	SpoIIIAH-like	protein
DUF5011	PF16403.5	gi|529078050|ref|YP_008377053.1|	-	0.053	13.6	0.2	1.2	9.3	0.0	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5011)
SUKH_6	PF14568.6	gi|529078050|ref|YP_008377053.1|	-	0.063	13.7	0.0	0.2	12.1	0.0	1.7	2	0	0	2	2	2	0	SMI1-KNR4	cell-wall
polyprenyl_synt	PF00348.17	gi|529078051|ref|YP_008377054.1|	-	1.6e-52	178.1	0.0	1.9e-52	177.9	0.0	1.0	1	0	0	1	1	1	1	Polyprenyl	synthetase
Pyr_redox_2	PF07992.14	gi|529078052|ref|YP_008377055.1|	-	2.2e-61	207.7	3.0	2.8e-61	207.3	3.0	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|529078052|ref|YP_008377055.1|	-	3.7e-25	88.3	0.7	5.3e-20	71.8	0.1	3.5	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|529078052|ref|YP_008377055.1|	-	2.6e-12	47.0	0.0	5.9e-12	45.8	0.0	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
DAO	PF01266.24	gi|529078052|ref|YP_008377055.1|	-	1.2e-11	44.9	4.3	0.00087	19.0	0.5	4.1	3	1	1	4	4	4	4	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.6	gi|529078052|ref|YP_008377055.1|	-	5.7e-11	42.2	0.1	0.0037	16.6	0.0	3.8	2	2	1	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
Amino_oxidase	PF01593.24	gi|529078052|ref|YP_008377055.1|	-	1.3e-08	34.6	1.5	0.0047	16.3	0.5	2.8	2	1	0	3	3	3	2	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|529078052|ref|YP_008377055.1|	-	1.7e-08	34.6	0.2	0.01	16.1	0.1	2.7	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|529078052|ref|YP_008377055.1|	-	7.6e-08	31.5	0.1	0.26	9.9	0.0	4.0	3	1	1	4	4	4	3	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|529078052|ref|YP_008377055.1|	-	0.0019	17.6	0.3	0.055	12.8	0.0	2.5	3	0	0	3	3	3	1	FAD	dependent	oxidoreductase
3HCDH_N	PF02737.18	gi|529078052|ref|YP_008377055.1|	-	0.013	15.3	0.0	0.022	14.6	0.0	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Tricorn_PDZ	PF14685.6	gi|529078052|ref|YP_008377055.1|	-	0.027	14.4	0.2	0.11	12.5	0.1	2.2	2	0	0	2	2	2	0	Tricorn	protease	PDZ	domain
UDPG_MGDP_dh_N	PF03721.14	gi|529078052|ref|YP_008377055.1|	-	0.046	13.3	0.1	0.079	12.5	0.1	1.4	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Lycopene_cycl	PF05834.12	gi|529078052|ref|YP_008377055.1|	-	0.049	12.7	0.4	3	6.8	0.0	3.0	2	1	1	3	3	3	0	Lycopene	cyclase	protein
TrkA_N	PF02254.18	gi|529078052|ref|YP_008377055.1|	-	0.077	13.3	0.6	13	6.0	0.4	3.5	3	1	0	3	3	3	0	TrkA-N	domain
NAD_binding_9	PF13454.6	gi|529078052|ref|YP_008377055.1|	-	0.09	12.8	3.6	6.1	6.8	0.0	3.4	2	1	1	3	3	3	0	FAD-NAD(P)-binding
GIDA	PF01134.22	gi|529078052|ref|YP_008377055.1|	-	0.14	11.2	0.3	36	3.3	0.0	3.3	3	1	1	4	4	4	0	Glucose	inhibited	division	protein	A
2-Hacid_dh_C	PF02826.19	gi|529078052|ref|YP_008377055.1|	-	0.17	11.2	0.0	0.33	10.3	0.0	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
TraG_N	PF07916.11	gi|529078053|ref|YP_008377056.1|	-	0.0065	15.4	0.2	0.0073	15.2	0.2	1.0	1	0	0	1	1	1	1	TraG-like	protein,	N-terminal	region
LPD30	PF18850.1	gi|529078053|ref|YP_008377056.1|	-	0.06	13.1	0.0	0.07	12.9	0.0	1.1	1	0	0	1	1	1	0	Large	polyvalent	protein	associated	domain	30
DUF1684	PF07920.11	gi|529078054|ref|YP_008377057.1|	-	9.2e-52	175.0	0.1	1.1e-51	174.8	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1684)
Stomagen	PF16851.5	gi|529078054|ref|YP_008377057.1|	-	0.09	12.8	1.4	0.35	10.9	0.2	2.3	2	0	0	2	2	2	0	Stomagen
ABC2_membrane_3	PF12698.7	gi|529078055|ref|YP_008377058.1|	-	4.9e-34	118.0	12.4	6.1e-34	117.6	12.4	1.0	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|529078055|ref|YP_008377058.1|	-	1.5e-13	50.7	11.3	2.4e-13	50.0	11.3	1.3	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|529078055|ref|YP_008377058.1|	-	4.1e-07	29.8	14.1	4.1e-07	29.8	14.1	2.0	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|529078055|ref|YP_008377058.1|	-	0.00032	20.7	8.7	0.00032	20.7	8.7	2.4	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|529078056|ref|YP_008377059.1|	-	7.6e-28	97.7	0.0	1e-27	97.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529078056|ref|YP_008377059.1|	-	8.5e-15	55.3	0.2	1.3e-07	31.8	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|529078056|ref|YP_008377059.1|	-	0.00048	20.7	0.0	0.00058	20.4	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|529078056|ref|YP_008377059.1|	-	0.00048	19.8	0.1	0.00087	19.0	0.1	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_27	PF13514.6	gi|529078056|ref|YP_008377059.1|	-	0.0011	18.7	0.0	0.0018	17.9	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|529078056|ref|YP_008377059.1|	-	0.0041	16.6	0.1	1	8.8	0.1	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|529078056|ref|YP_008377059.1|	-	0.0077	16.5	0.0	0.014	15.7	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|529078056|ref|YP_008377059.1|	-	0.011	15.5	0.4	0.023	14.4	0.4	1.7	1	1	0	1	1	1	0	AAA	domain
CbiA	PF01656.23	gi|529078056|ref|YP_008377059.1|	-	0.022	14.8	0.0	0.028	14.5	0.0	1.3	1	0	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
SRP54	PF00448.22	gi|529078056|ref|YP_008377059.1|	-	0.026	14.1	0.1	0.046	13.3	0.1	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_16	PF13191.6	gi|529078056|ref|YP_008377059.1|	-	0.038	14.4	0.3	0.094	13.1	0.3	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_25	PF13481.6	gi|529078056|ref|YP_008377059.1|	-	0.047	13.3	0.0	0.086	12.4	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
AAA_14	PF13173.6	gi|529078056|ref|YP_008377059.1|	-	0.062	13.3	0.0	0.76	9.8	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_15	PF13175.6	gi|529078056|ref|YP_008377059.1|	-	0.076	12.7	0.0	0.086	12.5	0.0	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
Rad17	PF03215.15	gi|529078056|ref|YP_008377059.1|	-	0.095	12.6	0.0	0.16	11.9	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_33	PF13671.6	gi|529078056|ref|YP_008377059.1|	-	0.1	12.8	0.2	0.19	11.9	0.1	1.4	1	1	0	1	1	1	0	AAA	domain
Aldo_ket_red	PF00248.21	gi|529078058|ref|YP_008377061.1|	-	1.4e-74	251.0	0.0	1.5e-74	250.8	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
RHH_5	PF07878.11	gi|529078058|ref|YP_008377061.1|	-	0.089	12.7	0.1	0.21	11.5	0.1	1.6	1	0	0	1	1	1	0	CopG-like	RHH_1	or	ribbon-helix-helix	domain,	RHH_5
HSP20	PF00011.21	gi|529078059|ref|YP_008377062.1|	-	2.1e-16	59.9	0.0	3.5e-16	59.2	0.0	1.3	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|529078059|ref|YP_008377062.1|	-	3.3e-08	33.0	0.0	5e-08	32.4	0.0	1.3	1	0	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
GvpH	PF05455.11	gi|529078059|ref|YP_008377062.1|	-	0.0072	16.4	2.7	0.0091	16.1	2.1	1.4	1	1	0	1	1	1	1	GvpH
DUF5006	PF16397.5	gi|529078059|ref|YP_008377062.1|	-	0.14	11.4	0.0	0.19	10.9	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5006)
Helicase_C_2	PF13307.6	gi|529078060|ref|YP_008377063.1|	-	5e-29	101.6	0.0	1.3e-28	100.3	0.0	1.6	2	0	0	2	2	1	1	Helicase	C-terminal	domain
DEAD_2	PF06733.15	gi|529078060|ref|YP_008377063.1|	-	4.2e-18	65.6	0.0	9.2e-18	64.5	0.0	1.6	1	1	0	1	1	1	1	DEAD_2
DEAD	PF00270.29	gi|529078060|ref|YP_008377063.1|	-	1.2e-09	38.2	0.1	2.4e-07	30.7	0.0	3.1	3	0	0	3	3	3	1	DEAD/DEAH	box	helicase
ResIII	PF04851.15	gi|529078060|ref|YP_008377063.1|	-	1.1e-06	28.8	0.1	4.4e-05	23.6	0.1	2.3	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
ATPase	PF06745.13	gi|529078060|ref|YP_008377063.1|	-	0.00013	21.4	0.7	0.00043	19.7	0.1	1.9	1	1	1	2	2	2	1	KaiC
DUF2075	PF09848.9	gi|529078060|ref|YP_008377063.1|	-	0.005	16.1	0.3	0.18	11.0	0.0	2.3	2	1	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
PhoH	PF02562.16	gi|529078060|ref|YP_008377063.1|	-	0.02	14.3	0.1	0.062	12.7	0.0	1.7	2	0	0	2	2	2	0	PhoH-like	protein
AAA_25	PF13481.6	gi|529078060|ref|YP_008377063.1|	-	0.022	14.3	0.2	0.12	11.9	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
ALIX_LYPXL_bnd	PF13949.6	gi|529078060|ref|YP_008377063.1|	-	0.024	13.9	1.6	0.06	12.6	1.6	1.6	1	0	0	1	1	1	0	ALIX	V-shaped	domain	binding	to	HIV
HBB	PF06777.11	gi|529078060|ref|YP_008377063.1|	-	0.033	13.9	0.0	0.078	12.7	0.0	1.5	1	0	0	1	1	1	0	Helical	and	beta-bridge	domain
Sigma54_activat	PF00158.26	gi|529078060|ref|YP_008377063.1|	-	0.034	13.9	0.0	0.066	12.9	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
Zot	PF05707.12	gi|529078060|ref|YP_008377063.1|	-	0.036	13.7	0.1	1.6	8.3	0.0	2.4	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
TrwB_AAD_bind	PF10412.9	gi|529078060|ref|YP_008377063.1|	-	0.044	12.7	0.1	0.08	11.8	0.1	1.3	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
DUF1441	PF07278.11	gi|529078060|ref|YP_008377063.1|	-	0.057	13.4	0.6	0.17	11.8	0.6	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1441)
CPT	PF07931.12	gi|529078060|ref|YP_008377063.1|	-	0.07	13.0	0.1	0.22	11.3	0.0	1.8	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
AAA_34	PF13872.6	gi|529078060|ref|YP_008377063.1|	-	0.072	12.0	0.0	0.13	11.1	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	NTP	hydrolase	pore-1
SecA_DEAD	PF07517.14	gi|529078060|ref|YP_008377063.1|	-	0.078	12.3	0.2	0.21	10.8	0.0	1.8	2	0	0	2	2	2	0	SecA	DEAD-like	domain
CENP-H	PF05837.12	gi|529078060|ref|YP_008377063.1|	-	0.092	13.2	3.8	0.23	11.9	3.8	1.6	1	0	0	1	1	1	0	Centromere	protein	H	(CENP-H)
HCMV_UL139	PF12507.8	gi|529078060|ref|YP_008377063.1|	-	0.18	12.2	0.7	0.44	10.9	0.3	1.7	1	1	0	1	1	1	0	Human	Cytomegalovirus	UL139	protein
AAA_22	PF13401.6	gi|529078060|ref|YP_008377063.1|	-	0.19	12.0	3.2	2.2	8.5	0.9	3.0	2	1	1	3	3	3	0	AAA	domain
AAA	PF00004.29	gi|529078060|ref|YP_008377063.1|	-	0.35	11.3	1.0	4.1	7.8	0.6	2.6	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|529078060|ref|YP_008377063.1|	-	1.7	9.0	10.0	1.6	9.1	5.3	2.9	2	1	0	2	2	2	0	AAA	ATPase	domain
DUF234	PF03008.14	gi|529078061|ref|YP_008377064.1|	-	1.5e-20	73.4	0.2	6.7e-20	71.4	0.2	2.1	3	0	0	3	3	2	1	Archaea	bacterial	proteins	of	unknown	function
ATPase_2	PF01637.18	gi|529078061|ref|YP_008377064.1|	-	8.7e-19	68.4	0.0	3e-17	63.3	0.0	2.2	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_14	PF13173.6	gi|529078061|ref|YP_008377064.1|	-	6.7e-08	32.6	0.0	1.4e-07	31.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
Mrr_cat	PF04471.12	gi|529078061|ref|YP_008377064.1|	-	7.8e-06	25.9	0.0	0.00018	21.5	0.0	2.3	2	0	0	2	2	2	1	Restriction	endonuclease
AAA_16	PF13191.6	gi|529078061|ref|YP_008377064.1|	-	1.9e-05	25.1	0.0	5.6e-05	23.6	0.0	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|529078061|ref|YP_008377064.1|	-	0.00011	22.4	0.0	0.00027	21.2	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|529078061|ref|YP_008377064.1|	-	0.00019	21.9	0.0	0.00037	20.9	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF2250	PF10007.9	gi|529078061|ref|YP_008377064.1|	-	0.0073	16.4	0.0	0.015	15.4	0.0	1.5	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
RuvB_N	PF05496.12	gi|529078061|ref|YP_008377064.1|	-	0.097	12.4	0.0	16	5.2	0.0	2.3	1	1	1	2	2	2	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_25	PF13481.6	gi|529078061|ref|YP_008377064.1|	-	0.13	11.9	0.3	8.9	5.8	0.0	2.8	2	1	1	3	3	3	0	AAA	domain
HTH_45	PF14947.6	gi|529078061|ref|YP_008377064.1|	-	0.19	11.8	0.0	0.47	10.5	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix
DUF4286	PF14114.6	gi|529078062|ref|YP_008377065.1|	-	0.024	15.1	0.2	0.047	14.2	0.2	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4286)
PIN	PF01850.21	gi|529078063|ref|YP_008377066.1|	-	2.2e-15	57.2	0.1	2.6e-15	57.0	0.1	1.0	1	0	0	1	1	1	1	PIN	domain
PIN_3	PF13470.6	gi|529078063|ref|YP_008377066.1|	-	0.041	14.6	0.1	0.044	14.5	0.1	1.3	1	1	0	1	1	1	0	PIN	domain
RE_MjaI	PF09568.10	gi|529078063|ref|YP_008377066.1|	-	0.22	11.4	0.0	0.35	10.7	0.0	1.2	1	0	0	1	1	1	0	MjaI	restriction	endonuclease
tRNA-synt_1c	PF00749.21	gi|529078064|ref|YP_008377067.1|	-	4.3e-56	190.1	0.0	5.3e-56	189.8	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
tRNA-synt_1c_C	PF03950.18	gi|529078064|ref|YP_008377067.1|	-	3.9e-19	69.2	0.0	8.5e-19	68.1	0.0	1.6	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	anti-codon	binding	domain
Meth_synt_1	PF08267.12	gi|529078064|ref|YP_008377067.1|	-	0.085	12.4	0.0	0.14	11.7	0.0	1.2	1	0	0	1	1	1	0	Cobalamin-independent	synthase,	N-terminal	domain
polyprenyl_synt	PF00348.17	gi|529078065|ref|YP_008377068.1|	-	6.3e-64	215.5	0.1	7.8e-64	215.2	0.1	1.1	1	0	0	1	1	1	1	Polyprenyl	synthetase
Lactamase_B_2	PF12706.7	gi|529078066|ref|YP_008377069.1|	-	1.6e-10	40.8	1.6	1.5e-08	34.4	0.2	2.8	2	1	1	3	3	3	2	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|529078066|ref|YP_008377069.1|	-	6.1e-07	29.6	2.5	1.6e-06	28.3	2.5	1.8	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
RMMBL	PF07521.12	gi|529078066|ref|YP_008377069.1|	-	0.00099	19.0	0.2	0.042	13.8	0.0	2.7	2	0	0	2	2	2	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
DegT_DnrJ_EryC1	PF01041.17	gi|529078066|ref|YP_008377069.1|	-	0.035	13.4	0.1	7	5.8	0.0	2.2	2	0	0	2	2	2	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Na_H_antiport_3	PF07399.11	gi|529078067|ref|YP_008377070.1|	-	0.079	11.8	2.6	0.11	11.4	2.6	1.1	1	0	0	1	1	1	0	Putative	Na+/H+	antiporter
AA_kinase	PF00696.28	gi|529078068|ref|YP_008377071.1|	-	3.3e-36	125.1	6.1	4.3e-36	124.7	6.1	1.1	1	0	0	1	1	1	1	Amino	acid	kinase	family
EccE	PF11203.8	gi|529078068|ref|YP_008377071.1|	-	1.1	9.6	4.2	1.6	9.1	0.2	2.8	3	1	0	3	3	3	0	Putative	type	VII	ESX	secretion	system	translocon,	EccE
RuBisCO_large	PF00016.20	gi|529078068|ref|YP_008377071.1|	-	1.3	8.2	6.8	0.21	10.7	3.2	1.5	2	0	0	2	2	2	0	Ribulose	bisphosphate	carboxylase	large	chain,	catalytic	domain
GHMP_kinases_C	PF08544.13	gi|529078069|ref|YP_008377072.1|	-	1e-14	54.6	1.6	1.7e-12	47.5	0.2	2.5	2	0	0	2	2	2	2	GHMP	kinases	C	terminal
GHMP_kinases_N	PF00288.26	gi|529078069|ref|YP_008377072.1|	-	1.9e-13	50.4	2.1	3.5e-13	49.6	1.3	1.9	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GalKase_gal_bdg	PF10509.9	gi|529078069|ref|YP_008377072.1|	-	0.00015	21.3	0.1	0.00038	20.0	0.1	1.7	1	0	0	1	1	1	1	Galactokinase	galactose-binding	signature
DUF5518	PF17647.1	gi|529078070|ref|YP_008377073.1|	-	9.4e-20	70.9	28.8	1e-19	70.8	28.8	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5518)
DUF2207	PF09972.9	gi|529078071|ref|YP_008377074.1|	-	0.048	12.4	1.0	0.047	12.5	1.0	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF3989	PF13150.6	gi|529078071|ref|YP_008377074.1|	-	0.068	12.9	0.3	0.1	12.3	0.1	1.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3989)
DUF4781	PF16013.5	gi|529078071|ref|YP_008377074.1|	-	0.075	11.8	1.6	0.077	11.8	1.6	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4781)
DUF4175	PF13779.6	gi|529078071|ref|YP_008377074.1|	-	0.52	8.2	1.6	0.56	8.0	1.6	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4175)
DUF393	PF04134.12	gi|529078072|ref|YP_008377075.1|	-	8.2e-15	56.1	0.0	9.1e-15	56.0	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF393
Aldo_ket_red	PF00248.21	gi|529078073|ref|YP_008377076.1|	-	1.7e-56	191.6	0.0	1.4e-54	185.3	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
DDE_Tnp_1	PF01609.21	gi|529078074|ref|YP_008377077.1|	-	6.4e-12	45.6	0.2	9.3e-12	45.0	0.2	1.3	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.6	gi|529078074|ref|YP_008377077.1|	-	2.9e-07	30.8	0.1	3.7e-07	30.4	0.1	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_3	PF13612.6	gi|529078074|ref|YP_008377077.1|	-	0.00065	19.7	0.0	0.00083	19.4	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_4	PF13359.6	gi|529078074|ref|YP_008377077.1|	-	0.0014	18.4	0.0	0.0015	18.2	0.0	1.1	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
Binary_toxB	PF03495.14	gi|529078075|ref|YP_008377078.1|	-	0.0056	16.9	12.7	0.022	15.0	0.5	3.7	1	1	2	3	3	3	3	Clostridial	binary	toxin	B/anthrax	toxin	PA	Ca-binding	domain
HEAT_2	PF13646.6	gi|529078076|ref|YP_008377079.1|	-	0.00035	20.9	2.7	0.0016	18.8	1.3	2.4	1	1	0	2	2	2	1	HEAT	repeats
DUF4214	PF13946.6	gi|529078076|ref|YP_008377079.1|	-	0.048	13.7	0.1	0.11	12.6	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4214)
PWI	PF01480.17	gi|529078076|ref|YP_008377079.1|	-	0.11	12.9	0.2	6.4	7.2	0.0	2.5	2	0	0	2	2	2	0	PWI	domain
Lum_binding	PF00677.17	gi|529078079|ref|YP_008377082.1|	-	3.6e-45	151.9	2.4	1.6e-22	79.3	0.2	2.1	2	0	0	2	2	2	2	Lumazine	binding	domain
DUF211	PF02680.14	gi|529078079|ref|YP_008377082.1|	-	0.13	12.4	4.0	4.8	7.4	0.1	2.8	2	2	0	2	2	2	0	Uncharacterized	ArCR,	COG1888
Imm65	PF15582.6	gi|529078079|ref|YP_008377082.1|	-	0.22	10.4	0.0	0.63	8.8	0.0	1.6	2	0	0	2	2	2	0	Immunity	protein	65
DHBP_synthase	PF00926.19	gi|529078080|ref|YP_008377083.1|	-	1.5e-78	262.8	0.2	2.2e-78	262.2	0.2	1.3	1	0	0	1	1	1	1	3,4-dihydroxy-2-butanone	4-phosphate	synthase
GTP_cyclohydro2	PF00925.20	gi|529078080|ref|YP_008377083.1|	-	1.2e-61	207.0	0.0	4.9e-61	205.1	0.0	1.8	2	0	0	2	2	2	1	GTP	cyclohydrolase	II
PucR	PF07905.11	gi|529078080|ref|YP_008377083.1|	-	0.049	13.9	0.0	0.12	12.6	0.0	1.7	2	0	0	2	2	2	0	Purine	catabolism	regulatory	protein-like	family
DMRL_synthase	PF00885.19	gi|529078081|ref|YP_008377084.1|	-	1.1e-58	197.1	0.1	1.2e-58	196.9	0.1	1.0	1	0	0	1	1	1	1	6,7-dimethyl-8-ribityllumazine	synthase
Fe_dep_repr_C	PF02742.15	gi|529078082|ref|YP_008377085.1|	-	1.1e-28	99.1	1.9	2.5e-28	97.9	1.9	1.7	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
Fe_dep_repress	PF01325.19	gi|529078082|ref|YP_008377085.1|	-	3.3e-17	62.4	0.1	7.8e-17	61.2	0.1	1.7	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
FeoA	PF04023.14	gi|529078082|ref|YP_008377085.1|	-	4.5e-13	49.3	0.1	7.9e-13	48.5	0.1	1.4	1	0	0	1	1	1	1	FeoA	domain
MarR_2	PF12802.7	gi|529078082|ref|YP_008377085.1|	-	5.6e-07	29.4	0.1	2.6e-06	27.2	0.1	2.2	2	0	0	2	2	2	1	MarR	family
MarR	PF01047.22	gi|529078082|ref|YP_008377085.1|	-	3.8e-06	26.7	0.0	8.4e-06	25.6	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|529078082|ref|YP_008377085.1|	-	2.6e-05	24.1	0.0	9.5e-05	22.3	0.0	1.9	3	0	0	3	3	2	1	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|529078082|ref|YP_008377085.1|	-	0.00022	21.0	0.0	0.00067	19.4	0.0	1.8	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Crp	PF00325.20	gi|529078082|ref|YP_008377085.1|	-	0.00051	19.6	0.0	0.0025	17.4	0.0	2.2	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	crp	family
Rrf2	PF02082.20	gi|529078082|ref|YP_008377085.1|	-	0.0015	18.8	0.0	0.0043	17.4	0.0	1.8	2	0	0	2	2	1	1	Transcriptional	regulator
HTH_23	PF13384.6	gi|529078082|ref|YP_008377085.1|	-	0.0018	18.0	0.0	0.2	11.5	0.0	2.5	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_1	PF00126.27	gi|529078082|ref|YP_008377085.1|	-	0.0028	17.6	0.0	0.0093	15.9	0.0	1.9	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_12	PF08461.10	gi|529078082|ref|YP_008377085.1|	-	0.0033	17.3	0.2	0.017	15.0	0.1	2.2	1	1	1	2	2	2	1	Ribonuclease	R	winged-helix	domain
HTH_20	PF12840.7	gi|529078082|ref|YP_008377085.1|	-	0.0046	17.0	0.1	0.021	14.9	0.0	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
GntR	PF00392.21	gi|529078082|ref|YP_008377085.1|	-	0.011	15.3	0.0	0.025	14.2	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
TrmB	PF01978.19	gi|529078082|ref|YP_008377085.1|	-	0.039	13.9	0.0	0.34	10.8	0.0	2.2	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_DeoR	PF08220.12	gi|529078082|ref|YP_008377085.1|	-	0.039	13.7	0.0	0.41	10.4	0.0	2.4	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|529078082|ref|YP_008377085.1|	-	0.13	11.8	0.0	0.26	10.9	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
UPF0016	PF01169.19	gi|529078083|ref|YP_008377086.1|	-	1.2e-25	89.7	17.8	9e-15	54.8	4.6	2.4	2	0	0	2	2	2	2	Uncharacterized	protein	family	UPF0016
Vma12	PF11712.8	gi|529078083|ref|YP_008377086.1|	-	0.45	10.6	1.3	0.81	9.8	1.3	1.3	1	0	0	1	1	1	0	Endoplasmic	reticulum-based	factor	for	assembly	of	V-ATPase
Fe_dep_repress	PF01325.19	gi|529078084|ref|YP_008377087.1|	-	1.3e-10	41.3	0.0	2.6e-10	40.3	0.0	1.5	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.7	gi|529078084|ref|YP_008377087.1|	-	4e-05	23.4	0.0	7.7e-05	22.5	0.0	1.5	1	0	0	1	1	1	1	MarR	family
Fe_dep_repr_C	PF02742.15	gi|529078084|ref|YP_008377087.1|	-	0.00072	19.6	0.1	0.0024	17.9	0.0	1.8	2	0	0	2	2	2	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
HTH_Crp_2	PF13545.6	gi|529078084|ref|YP_008377087.1|	-	0.0075	16.2	0.0	0.024	14.6	0.0	1.9	1	1	1	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_20	PF12840.7	gi|529078084|ref|YP_008377087.1|	-	0.029	14.4	0.1	0.069	13.2	0.1	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
TrmB	PF01978.19	gi|529078084|ref|YP_008377087.1|	-	0.036	13.9	0.0	0.061	13.2	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|529078084|ref|YP_008377087.1|	-	0.04	14.4	0.0	0.068	13.7	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|529078084|ref|YP_008377087.1|	-	0.042	13.8	0.0	0.084	12.8	0.0	1.6	1	0	0	1	1	1	0	MarR	family
EamA	PF00892.20	gi|529078086|ref|YP_008377089.1|	-	4.9e-37	127.1	31.4	2.1e-18	66.8	10.2	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
CBS	PF00571.28	gi|529078087|ref|YP_008377090.1|	-	5.2e-28	97.3	4.7	3.2e-15	56.3	0.6	2.1	2	0	0	2	2	2	2	CBS	domain
PB1	PF00564.24	gi|529078087|ref|YP_008377090.1|	-	0.06	13.3	0.5	5.8	6.9	0.0	2.9	2	1	0	2	2	2	0	PB1	domain
GCV_T_C	PF08669.11	gi|529078087|ref|YP_008377090.1|	-	0.13	12.2	0.0	21	5.1	0.0	2.3	2	0	0	2	2	2	0	Glycine	cleavage	T-protein	C-terminal	barrel	domain
DUF502	PF04367.13	gi|529078088|ref|YP_008377091.1|	-	8.8e-19	67.4	0.3	2.1e-18	66.2	0.0	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF502)
Fig1	PF12351.8	gi|529078088|ref|YP_008377091.1|	-	0.075	12.9	0.7	0.096	12.6	0.7	1.1	1	0	0	1	1	1	0	Ca2+	regulator	and	membrane	fusion	protein	Fig1
Aminotran_4	PF01063.19	gi|529078089|ref|YP_008377092.1|	-	2.9e-51	174.5	0.0	3.3e-51	174.3	0.0	1.0	1	0	0	1	1	1	1	Amino-transferase	class	IV
DUF1738	PF08401.11	gi|529078089|ref|YP_008377092.1|	-	0.026	14.6	0.0	0.051	13.7	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1738)
PIN	PF01850.21	gi|529078090|ref|YP_008377093.1|	-	2.6e-09	37.6	0.0	3e-09	37.4	0.0	1.0	1	0	0	1	1	1	1	PIN	domain
HTH_20	PF12840.7	gi|529078091|ref|YP_008377094.1|	-	4.3e-06	26.7	0.0	3.3e-05	23.9	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|529078091|ref|YP_008377094.1|	-	7e-06	25.8	0.2	8.4e-05	22.3	0.2	2.1	1	1	1	2	2	2	1	AsnC-type	helix-turn-helix	domain
TrmB	PF01978.19	gi|529078091|ref|YP_008377094.1|	-	2.6e-05	24.0	0.0	3.9e-05	23.4	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|529078091|ref|YP_008377094.1|	-	0.00012	21.9	0.1	0.00021	21.1	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|529078091|ref|YP_008377094.1|	-	0.00024	20.6	0.0	0.00033	20.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Mnd1	PF03962.15	gi|529078091|ref|YP_008377094.1|	-	0.0032	17.7	0.0	0.0049	17.1	0.0	1.2	1	0	0	1	1	1	1	Mnd1	HTH	domain
Fe_dep_repress	PF01325.19	gi|529078091|ref|YP_008377094.1|	-	0.0044	17.2	0.0	0.0075	16.4	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_Crp_2	PF13545.6	gi|529078091|ref|YP_008377094.1|	-	0.008	16.1	0.0	0.011	15.7	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Rrf2	PF02082.20	gi|529078091|ref|YP_008377094.1|	-	0.0087	16.4	0.0	0.011	16.0	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_10	PF04967.12	gi|529078091|ref|YP_008377094.1|	-	0.016	15.0	0.0	0.027	14.3	0.0	1.3	1	0	0	1	1	1	0	HTH	DNA	binding	domain
MarR	PF01047.22	gi|529078091|ref|YP_008377094.1|	-	0.024	14.5	0.0	0.039	13.9	0.0	1.4	1	0	0	1	1	1	0	MarR	family
FaeA	PF04703.12	gi|529078091|ref|YP_008377094.1|	-	0.03	14.7	0.0	0.044	14.2	0.0	1.2	1	0	0	1	1	1	0	FaeA-like	protein
HTH_5	PF01022.20	gi|529078091|ref|YP_008377094.1|	-	0.064	13.1	0.0	0.1	12.5	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_CodY	PF08222.11	gi|529078091|ref|YP_008377094.1|	-	0.066	12.8	0.0	0.099	12.2	0.0	1.3	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
SMC_ScpB	PF04079.16	gi|529078091|ref|YP_008377094.1|	-	0.13	11.8	0.0	0.17	11.5	0.0	1.1	1	0	0	1	1	1	0	Segregation	and	condensation	complex	subunit	ScpB
CTP-dep_RFKase	PF01982.16	gi|529078092|ref|YP_008377095.1|	-	6.1e-44	149.0	0.0	9.4e-44	148.4	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF120
MarR_2	PF12802.7	gi|529078092|ref|YP_008377095.1|	-	0.00028	20.7	0.5	0.00054	19.8	0.5	1.4	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|529078092|ref|YP_008377095.1|	-	0.00037	20.4	0.0	0.00063	19.6	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|529078092|ref|YP_008377095.1|	-	0.00045	19.7	0.1	0.00081	18.9	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|529078092|ref|YP_008377095.1|	-	0.004	17.2	0.7	0.01	15.9	0.7	1.7	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|529078092|ref|YP_008377095.1|	-	0.0069	16.3	0.1	0.014	15.4	0.1	1.5	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_11	PF08279.12	gi|529078092|ref|YP_008377095.1|	-	0.0069	16.3	0.1	0.014	15.3	0.1	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_AsnC-type	PF13404.6	gi|529078092|ref|YP_008377095.1|	-	0.012	15.4	0.2	0.041	13.7	0.2	1.9	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Ribosomal_S19e	PF01090.19	gi|529078092|ref|YP_008377095.1|	-	0.12	12.1	0.1	0.18	11.5	0.1	1.2	1	0	0	1	1	1	0	Ribosomal	protein	S19e
Radical_SAM	PF04055.21	gi|529078093|ref|YP_008377096.1|	-	2.5e-20	73.5	0.2	5e-20	72.5	0.2	1.5	1	1	0	1	1	1	1	Radical	SAM	superfamily
Wyosine_form	PF08608.12	gi|529078093|ref|YP_008377096.1|	-	1.5e-17	63.7	0.0	5.1e-17	62.0	0.0	2.0	2	0	0	2	2	2	1	Wyosine	base	formation
PemK_toxin	PF02452.17	gi|529078094|ref|YP_008377097.1|	-	0.0083	16.5	0.0	0.009	16.4	0.0	1.1	1	0	0	1	1	1	1	PemK-like,	MazF-like	toxin	of	type	II	toxin-antitoxin	system
MarR_2	PF12802.7	gi|529078095|ref|YP_008377098.1|	-	1.3e-08	34.6	0.1	1.8e-08	34.1	0.1	1.2	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|529078095|ref|YP_008377098.1|	-	0.00011	21.9	0.1	0.00018	21.3	0.1	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|529078095|ref|YP_008377098.1|	-	0.0002	21.6	0.0	0.00029	21.1	0.0	1.1	1	0	0	1	1	1	1	Transcriptional	regulator
TrmB	PF01978.19	gi|529078095|ref|YP_008377098.1|	-	0.00028	20.7	0.0	0.00041	20.2	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.6	gi|529078095|ref|YP_008377098.1|	-	0.00038	20.4	0.0	0.00052	19.9	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
DUF4423	PF14394.6	gi|529078095|ref|YP_008377098.1|	-	0.00082	19.1	0.1	0.0014	18.3	0.0	1.3	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4423)
HTH_27	PF13463.6	gi|529078095|ref|YP_008377098.1|	-	0.0065	16.9	0.0	0.0086	16.6	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
LPD22	PF18834.1	gi|529078095|ref|YP_008377098.1|	-	0.01	16.0	0.1	0.014	15.6	0.1	1.2	1	0	0	1	1	1	0	Large	polyvalent	protein	associated	domain	22
MarR	PF01047.22	gi|529078095|ref|YP_008377098.1|	-	0.011	15.7	0.0	0.017	15.0	0.0	1.2	1	0	0	1	1	1	0	MarR	family
HTH_20	PF12840.7	gi|529078095|ref|YP_008377098.1|	-	0.011	15.7	0.1	0.016	15.3	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|529078095|ref|YP_008377098.1|	-	0.013	15.4	0.0	0.018	14.9	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|529078095|ref|YP_008377098.1|	-	0.019	14.5	0.1	0.029	13.9	0.1	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
GntR	PF00392.21	gi|529078095|ref|YP_008377098.1|	-	0.023	14.3	0.1	0.039	13.6	0.1	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
Fe_dep_repress	PF01325.19	gi|529078095|ref|YP_008377098.1|	-	0.089	13.0	0.0	0.16	12.2	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DUF433	PF04255.14	gi|529078096|ref|YP_008377099.1|	-	3.1e-17	62.2	0.1	3.7e-17	61.9	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF433)
ADH_N	PF08240.12	gi|529078097|ref|YP_008377100.1|	-	1.8e-32	111.4	0.1	3.7e-32	110.4	0.1	1.5	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|529078097|ref|YP_008377100.1|	-	3.3e-24	85.3	1.0	4.9e-24	84.8	1.0	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|529078097|ref|YP_008377100.1|	-	1.4e-06	29.3	0.5	1.4e-06	29.3	0.5	1.6	2	0	0	2	2	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|529078097|ref|YP_008377100.1|	-	5e-06	26.1	1.4	7.4e-06	25.6	1.4	1.3	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
Sacchrp_dh_NADP	PF03435.18	gi|529078097|ref|YP_008377100.1|	-	0.0077	16.5	0.5	0.015	15.6	0.5	1.5	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_7	PF13241.6	gi|529078097|ref|YP_008377100.1|	-	0.0085	16.5	0.4	0.014	15.8	0.4	1.3	1	0	0	1	1	1	1	Putative	NAD(P)-binding
NAD_binding_3	PF03447.16	gi|529078097|ref|YP_008377100.1|	-	0.026	15.2	1.4	0.055	14.1	1.4	1.5	1	0	0	1	1	1	0	Homoserine	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|529078097|ref|YP_008377100.1|	-	0.034	13.5	2.3	0.053	12.8	2.3	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
2-Hacid_dh_C	PF02826.19	gi|529078097|ref|YP_008377100.1|	-	0.039	13.3	0.6	0.077	12.4	0.6	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.18	gi|529078097|ref|YP_008377100.1|	-	0.04	14.2	0.4	0.069	13.4	0.4	1.5	1	0	0	1	1	1	0	TrkA-N	domain
Methyltransf_25	PF13649.6	gi|529078097|ref|YP_008377100.1|	-	0.05	14.3	0.2	0.11	13.2	0.2	1.6	1	0	0	1	1	1	0	Methyltransferase	domain
F420_oxidored	PF03807.17	gi|529078097|ref|YP_008377100.1|	-	0.084	13.5	0.5	0.16	12.6	0.5	1.5	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
GFO_IDH_MocA	PF01408.22	gi|529078097|ref|YP_008377100.1|	-	0.16	12.8	0.2	0.29	11.9	0.2	1.4	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
3HCDH_N	PF02737.18	gi|529078097|ref|YP_008377100.1|	-	1.4	8.8	3.5	3.4	7.5	3.4	1.8	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
tRNA-synt_1d	PF00750.19	gi|529078098|ref|YP_008377101.1|	-	5.4e-36	124.2	0.0	7.2e-36	123.8	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(R)
DALR_1	PF05746.15	gi|529078098|ref|YP_008377101.1|	-	3.5e-35	120.7	0.0	2.6e-34	117.9	0.0	2.3	2	0	0	2	2	2	1	DALR	anticodon	binding	domain
Arg_tRNA_synt_N	PF03485.16	gi|529078098|ref|YP_008377101.1|	-	6.1e-07	29.9	0.0	1.6e-06	28.6	0.0	1.7	1	0	0	1	1	1	1	Arginyl	tRNA	synthetase	N	terminal	domain
tRNA-synt_1f	PF01921.18	gi|529078098|ref|YP_008377101.1|	-	0.0066	15.4	0.0	0.049	12.5	0.0	2.0	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1g	PF09334.11	gi|529078098|ref|YP_008377101.1|	-	0.1	11.3	0.0	13	4.4	0.0	2.7	1	1	1	3	3	3	0	tRNA	synthetases	class	I	(M)
tRNA-synt_1e	PF01406.19	gi|529078098|ref|YP_008377101.1|	-	0.15	11.4	0.0	0.25	10.7	0.0	1.3	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(C)	catalytic	domain
AAA_31	PF13614.6	gi|529078099|ref|YP_008377102.1|	-	5.9e-19	68.7	0.0	8.6e-19	68.1	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|529078099|ref|YP_008377102.1|	-	1e-15	57.9	0.5	1.9e-15	57.1	0.5	1.4	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|529078099|ref|YP_008377102.1|	-	6.7e-15	55.2	6.9	6.4e-14	52.0	6.9	2.4	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CBP_BcsQ	PF06564.12	gi|529078099|ref|YP_008377102.1|	-	1e-10	41.5	0.1	1.6e-10	40.9	0.1	1.2	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
MipZ	PF09140.11	gi|529078099|ref|YP_008377102.1|	-	2e-09	37.2	0.6	3.7e-09	36.3	0.6	1.4	1	1	0	1	1	1	1	ATPase	MipZ
ArsA_ATPase	PF02374.15	gi|529078099|ref|YP_008377102.1|	-	5.7e-06	25.7	3.1	1.7e-05	24.2	1.4	2.0	1	1	0	2	2	2	1	Anion-transporting	ATPase
Fer4_NifH	PF00142.18	gi|529078099|ref|YP_008377102.1|	-	4.8e-05	22.9	0.0	0.0097	15.4	0.0	2.1	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_26	PF13500.6	gi|529078099|ref|YP_008377102.1|	-	0.00017	21.5	2.0	0.0015	18.4	2.0	2.5	1	1	0	1	1	1	1	AAA	domain
SRP54	PF00448.22	gi|529078099|ref|YP_008377102.1|	-	0.0006	19.5	0.8	0.17	11.5	0.3	2.2	2	0	0	2	2	2	2	SRP54-type	protein,	GTPase	domain
AAA_24	PF13479.6	gi|529078099|ref|YP_008377102.1|	-	0.00064	19.5	0.1	0.001	18.8	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
MeaB	PF03308.16	gi|529078099|ref|YP_008377102.1|	-	0.01	14.9	3.7	0.41	9.6	0.6	2.1	2	0	0	2	2	2	2	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
VirC1	PF07015.11	gi|529078099|ref|YP_008377102.1|	-	0.21	10.8	0.7	1.5	8.0	0.2	2.1	2	0	0	2	2	2	0	VirC1	protein
DUF1611	PF07755.11	gi|529078099|ref|YP_008377102.1|	-	0.26	10.5	3.9	3.3	6.9	1.3	2.2	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF1611_C)	P-loop	domain
AAA_25	PF13481.6	gi|529078099|ref|YP_008377102.1|	-	1.6	8.3	7.0	2.1	7.8	4.5	2.4	2	1	0	2	2	2	0	AAA	domain
eRF1_2	PF03464.15	gi|529078100|ref|YP_008377103.1|	-	5.2e-41	140.1	0.0	1e-40	139.1	0.0	1.5	1	0	0	1	1	1	1	eRF1	domain	2
eRF1_3	PF03465.15	gi|529078100|ref|YP_008377103.1|	-	5.3e-29	101.0	0.5	1.2e-28	99.8	0.1	1.8	2	0	0	2	2	2	1	eRF1	domain	3
acVLRF1	PF18859.1	gi|529078100|ref|YP_008377103.1|	-	2.1e-18	66.8	0.4	6.1e-18	65.4	0.1	1.8	2	0	0	2	2	2	1	Actinobacteria/chloroflexi	VLRF1	release	factor
baeRF_family10	PF18854.1	gi|529078100|ref|YP_008377103.1|	-	7.5e-14	52.2	0.2	4.6e-13	49.6	0.0	2.2	2	0	0	2	2	2	1	Bacterial	archaeo-eukaryotic	release	factor	family	10
eRF1_1	PF03463.15	gi|529078100|ref|YP_008377103.1|	-	2.9e-09	37.0	0.0	4.6e-09	36.4	0.0	1.3	1	0	0	1	1	1	1	eRF1	domain	1
RbpA	PF13397.6	gi|529078100|ref|YP_008377103.1|	-	0.0036	17.9	0.1	0.011	16.3	0.1	1.8	1	0	0	1	1	1	1	RNA	polymerase-binding	protein
Zn-ribbon_8	PF09723.10	gi|529078100|ref|YP_008377103.1|	-	0.013	15.6	3.0	0.018	15.1	1.5	2.0	2	0	0	2	2	2	0	Zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|529078100|ref|YP_008377103.1|	-	0.28	10.7	2.1	0.64	9.6	2.1	1.6	1	0	0	1	1	1	0	TFIIB	zinc-binding
zf-ribbon_3	PF13248.6	gi|529078101|ref|YP_008377104.1|	-	0.057	12.8	1.8	5	6.7	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Cys_rich_CWC	PF14375.6	gi|529078101|ref|YP_008377104.1|	-	0.13	12.7	0.1	0.66	10.4	0.1	1.9	1	1	1	2	2	2	0	Cysteine-rich	CWC
zinc_ribbon_2	PF13240.6	gi|529078101|ref|YP_008377104.1|	-	0.14	11.9	2.4	9	6.2	0.6	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf_UBZ	PF18439.1	gi|529078101|ref|YP_008377104.1|	-	0.17	11.5	0.6	3.4	7.4	0.0	2.2	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
TF_Zn_Ribbon	PF08271.12	gi|529078101|ref|YP_008377104.1|	-	0.24	11.0	3.0	1.6	8.3	3.0	2.1	1	1	0	1	1	1	0	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.10	gi|529078101|ref|YP_008377104.1|	-	0.27	11.4	1.3	20	5.4	0.1	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
PIN_5	PF08745.11	gi|529078102|ref|YP_008377105.1|	-	2.6e-83	278.5	0.8	2.9e-83	278.4	0.8	1.0	1	0	0	1	1	1	1	PINc	domain	ribonuclease
PIN_3	PF13470.6	gi|529078102|ref|YP_008377105.1|	-	0.033	15.0	3.3	0.18	12.5	3.3	2.0	1	1	0	1	1	1	0	PIN	domain
CorA	PF01544.18	gi|529078102|ref|YP_008377105.1|	-	0.13	11.6	2.4	0.061	12.6	0.5	1.5	2	0	0	2	2	2	0	CorA-like	Mg2+	transporter	protein
Pup	PF05639.11	gi|529078102|ref|YP_008377105.1|	-	3.7	8.5	6.6	4.1	8.4	0.3	2.3	2	0	0	2	2	2	0	Pup-like	protein
AlaDh_PNT_C	PF01262.21	gi|529078103|ref|YP_008377106.1|	-	1.8e-69	233.4	0.8	2.2e-69	233.0	0.8	1.1	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
AlaDh_PNT_N	PF05222.15	gi|529078103|ref|YP_008377106.1|	-	1.6e-35	122.4	0.4	1.4e-34	119.3	0.0	2.2	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	N-terminal	domain
2-Hacid_dh_C	PF02826.19	gi|529078103|ref|YP_008377106.1|	-	4.8e-06	26.0	0.0	0.0028	17.1	0.0	2.6	2	1	1	3	3	3	2	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Pyr_redox_2	PF07992.14	gi|529078103|ref|YP_008377106.1|	-	0.00042	19.6	0.1	0.00059	19.2	0.1	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_2	PF03446.15	gi|529078103|ref|YP_008377106.1|	-	0.0017	18.6	0.5	0.0079	16.4	0.5	2.1	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
HI0933_like	PF03486.14	gi|529078103|ref|YP_008377106.1|	-	0.0098	14.6	0.0	0.049	12.3	0.0	2.1	3	0	0	3	3	3	1	HI0933-like	protein
GIDA	PF01134.22	gi|529078103|ref|YP_008377106.1|	-	0.0099	15.0	0.2	0.015	14.4	0.2	1.2	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
3HCDH_N	PF02737.18	gi|529078103|ref|YP_008377106.1|	-	0.016	15.1	0.8	0.033	14.1	0.8	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
XdhC_C	PF13478.6	gi|529078103|ref|YP_008377106.1|	-	0.018	15.6	0.2	1.6	9.2	0.1	2.8	2	1	1	3	3	3	0	XdhC	Rossmann	domain
NAD_binding_8	PF13450.6	gi|529078103|ref|YP_008377106.1|	-	0.021	15.0	0.2	0.16	12.2	0.2	2.3	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
ADH_zinc_N	PF00107.26	gi|529078103|ref|YP_008377106.1|	-	0.075	13.0	0.3	0.23	11.4	0.3	1.9	1	1	0	1	1	1	0	Zinc-binding	dehydrogenase
PNTB_4TM	PF12769.7	gi|529078104|ref|YP_008377107.1|	-	5.7e-29	100.4	6.8	6.4e-29	100.2	6.8	1.0	1	0	0	1	1	1	1	4TM	region	of	pyridine	nucleotide	transhydrogenase,	mitoch
TMEM206	PF15122.6	gi|529078104|ref|YP_008377107.1|	-	0.15	11.2	0.1	0.23	10.6	0.1	1.3	1	1	0	1	1	1	0	TMEM206	protein	family
DUF1146	PF06612.11	gi|529078104|ref|YP_008377107.1|	-	0.32	11.1	4.5	0.18	11.9	1.0	2.3	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1146)
PNTB	PF02233.16	gi|529078105|ref|YP_008377108.1|	-	4.1e-173	576.5	14.1	4.7e-173	576.3	14.1	1.0	1	0	0	1	1	1	1	NAD(P)	transhydrogenase	beta	subunit
TPP_enzyme_M	PF00205.22	gi|529078105|ref|YP_008377108.1|	-	0.0016	18.2	0.2	0.044	13.5	0.1	2.5	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	central	domain
PseudoU_synth_1	PF01416.20	gi|529078106|ref|YP_008377109.1|	-	6.5e-11	42.7	0.0	2.7e-08	34.2	0.0	2.4	2	0	0	2	2	2	2	tRNA	pseudouridine	synthase
HAD_2	PF13419.6	gi|529078107|ref|YP_008377110.1|	-	1.4e-10	41.6	0.0	1.7e-10	41.2	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|529078107|ref|YP_008377110.1|	-	0.00036	20.5	0.1	0.0008	19.4	0.1	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD	PF12710.7	gi|529078107|ref|YP_008377110.1|	-	0.0015	18.9	1.6	0.0022	18.5	1.6	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|529078107|ref|YP_008377110.1|	-	0.0064	16.8	0.2	0.053	13.8	0.2	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
tRNA-synt_His	PF13393.6	gi|529078110|ref|YP_008377113.1|	-	4.4e-53	180.6	0.5	6e-53	180.1	0.5	1.1	1	0	0	1	1	1	1	Histidyl-tRNA	synthetase
HGTP_anticodon	PF03129.20	gi|529078110|ref|YP_008377113.1|	-	5.8e-14	52.0	0.0	1.2e-13	51.0	0.0	1.4	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|529078110|ref|YP_008377113.1|	-	6.7e-11	42.5	0.0	1.8e-10	41.1	0.0	1.7	1	1	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
tRNA-synt_2d	PF01409.20	gi|529078110|ref|YP_008377113.1|	-	0.17	11.3	0.0	0.35	10.3	0.0	1.4	1	1	0	1	1	1	0	tRNA	synthetases	class	II	core	domain	(F)
Asn_synthase	PF00733.21	gi|529078111|ref|YP_008377114.1|	-	6.5e-05	22.8	0.1	9.4e-05	22.2	0.1	1.2	1	0	0	1	1	1	1	Asparagine	synthase
DUF5631	PF18645.1	gi|529078111|ref|YP_008377114.1|	-	0.0098	16.3	0.5	0.13	12.7	0.1	2.2	1	1	1	2	2	2	1	Family	of	unknown	function	(DUF5631)
PAPS_reduct	PF01507.19	gi|529078111|ref|YP_008377114.1|	-	0.017	15.1	0.0	0.041	13.9	0.0	1.6	1	1	0	1	1	1	0	Phosphoadenosine	phosphosulfate	reductase	family
NAD_synthase	PF02540.17	gi|529078111|ref|YP_008377114.1|	-	0.047	12.8	0.0	0.072	12.2	0.0	1.3	1	0	0	1	1	1	0	NAD	synthase
QueC	PF06508.13	gi|529078111|ref|YP_008377114.1|	-	0.12	11.9	0.0	0.18	11.2	0.0	1.3	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
dsDNA_bind	PF01984.20	gi|529078112|ref|YP_008377115.1|	-	3.7e-27	94.8	9.3	4.2e-27	94.6	9.3	1.0	1	0	0	1	1	1	1	Double-stranded	DNA-binding	domain
SurA_N_3	PF13624.6	gi|529078112|ref|YP_008377115.1|	-	0.061	13.1	3.9	0.072	12.9	3.9	1.1	1	0	0	1	1	1	0	SurA	N-terminal	domain
PCI	PF01399.27	gi|529078112|ref|YP_008377115.1|	-	0.13	12.8	0.7	0.22	12.0	0.1	1.7	2	1	0	2	2	2	0	PCI	domain
CDT1_C	PF16679.5	gi|529078112|ref|YP_008377115.1|	-	0.15	12.5	2.8	0.2	12.1	2.8	1.2	1	0	0	1	1	1	0	DNA	replication	factor	Cdt1	C-terminal	domain
BIRC6	PF12356.8	gi|529078112|ref|YP_008377115.1|	-	0.28	10.6	2.2	6.1	6.2	0.5	2.1	1	1	1	2	2	2	0	Baculoviral	IAP	repeat-containing	protein	6
SurA_N_2	PF13623.6	gi|529078112|ref|YP_008377115.1|	-	0.3	11.0	2.8	0.37	10.6	2.8	1.1	1	0	0	1	1	1	0	SurA	N-terminal	domain
Ribosomal_S19e	PF01090.19	gi|529078113|ref|YP_008377116.1|	-	4.1e-49	165.8	0.0	4.7e-49	165.6	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S19e
GntR	PF00392.21	gi|529078113|ref|YP_008377116.1|	-	0.00081	19.0	0.0	0.0032	17.1	0.1	2.0	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
Mrr_N	PF14338.6	gi|529078113|ref|YP_008377116.1|	-	0.017	15.2	0.2	0.058	13.5	0.1	1.8	2	0	0	2	2	2	0	Mrr	N-terminal	domain
HTH_45	PF14947.6	gi|529078113|ref|YP_008377116.1|	-	0.044	13.8	0.0	0.45	10.5	0.0	2.1	2	0	0	2	2	2	0	Winged	helix-turn-helix
TrmB	PF01978.19	gi|529078113|ref|YP_008377116.1|	-	0.067	13.1	0.2	1.8	8.5	0.0	2.5	3	0	0	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|529078113|ref|YP_008377116.1|	-	0.12	12.7	0.0	0.27	11.6	0.0	1.7	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_12	PF08461.10	gi|529078113|ref|YP_008377116.1|	-	0.13	12.2	0.1	0.34	10.9	0.0	1.7	2	0	0	2	2	2	0	Ribonuclease	R	winged-helix	domain
LPG_synthase_TM	PF03706.13	gi|529078114|ref|YP_008377117.1|	-	6.6e-34	117.8	41.4	8.2e-34	117.5	41.4	1.0	1	0	0	1	1	1	1	Lysylphosphatidylglycerol	synthase	TM	region
AIRS	PF00586.24	gi|529078115|ref|YP_008377118.1|	-	7.7e-17	61.7	5.4	1.4e-16	60.9	5.4	1.4	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.22	gi|529078115|ref|YP_008377118.1|	-	7.1e-11	42.5	0.0	1.1e-10	41.9	0.0	1.2	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
PglZ	PF08665.12	gi|529078116|ref|YP_008377119.1|	-	0.023	14.8	0.1	0.064	13.4	0.0	1.7	2	0	0	2	2	2	0	PglZ	domain
Peptidase_M50	PF02163.22	gi|529078117|ref|YP_008377120.1|	-	1.2e-14	54.2	8.8	1.1e-07	31.4	0.2	2.3	1	1	1	2	2	2	2	Peptidase	family	M50
AA_kinase	PF00696.28	gi|529078119|ref|YP_008377122.1|	-	5.8e-30	104.7	4.8	2.1e-29	102.8	4.8	1.7	1	1	0	1	1	1	1	Amino	acid	kinase	family
Glyco_trans_4_4	PF13579.6	gi|529078119|ref|YP_008377122.1|	-	0.26	11.7	3.3	0.22	12.0	1.6	1.8	2	1	0	2	2	2	0	Glycosyl	transferase	4-like	domain
tRNA-synt_1f	PF01921.18	gi|529078120|ref|YP_008377123.1|	-	1.3e-97	327.0	0.0	1.8e-97	326.5	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1g	PF09334.11	gi|529078120|ref|YP_008377123.1|	-	6.1e-10	38.4	0.0	1.2e-05	24.2	0.0	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1e	PF01406.19	gi|529078120|ref|YP_008377123.1|	-	4.5e-05	22.9	0.0	0.0032	16.9	0.0	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
Peptidase_M50	PF02163.22	gi|529078121|ref|YP_008377124.1|	-	5.5e-24	84.8	0.1	2.3e-23	82.7	0.1	1.9	1	1	0	1	1	1	1	Peptidase	family	M50
PDZ_2	PF13180.6	gi|529078121|ref|YP_008377124.1|	-	4e-20	71.9	2.6	1.7e-07	31.4	0.0	3.3	1	1	1	3	3	3	3	PDZ	domain
PDZ	PF00595.24	gi|529078121|ref|YP_008377124.1|	-	1.2e-12	48.0	1.4	6.9e-06	26.3	0.1	3.3	1	1	2	3	3	3	2	PDZ	domain
PDZ_6	PF17820.1	gi|529078121|ref|YP_008377124.1|	-	4.9e-10	39.1	1.6	5.4e-05	22.9	0.0	3.4	3	1	0	3	3	3	2	PDZ	domain
Tricorn_PDZ	PF14685.6	gi|529078121|ref|YP_008377124.1|	-	3.4e-09	36.5	4.1	0.014	15.3	0.1	3.4	2	1	1	3	3	3	3	Tricorn	protease	PDZ	domain
DUF5489	PF17592.2	gi|529078121|ref|YP_008377124.1|	-	0.59	10.7	0.0	0.59	10.7	0.0	3.1	3	0	0	3	3	3	0	Family	of	unknown	function	(DUF5489)
Nre_N	PF04894.12	gi|529078122|ref|YP_008377125.1|	-	9.1e-102	340.5	0.0	1.1e-101	340.2	0.0	1.1	1	0	0	1	1	1	1	Archaeal	Nre,	N-terminal
Nre_C	PF04895.12	gi|529078122|ref|YP_008377125.1|	-	5.2e-39	132.6	0.0	2.7e-38	130.3	0.0	2.2	3	0	0	3	3	3	1	Archaeal	Nre,	C-terminal
VWA	PF00092.28	gi|529078125|ref|YP_008377128.1|	-	4.5e-23	82.4	0.2	1.5e-22	80.6	0.2	2.0	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_2	PF13519.6	gi|529078125|ref|YP_008377128.1|	-	7e-18	65.2	1.5	2.2e-17	63.6	0.1	2.6	3	0	0	3	3	3	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.14	gi|529078125|ref|YP_008377128.1|	-	0.0061	16.0	0.1	0.017	14.5	0.1	1.7	1	0	0	1	1	1	1	VWA	domain	containing	CoxE-like	protein
Zincin_1	PF06262.11	gi|529078125|ref|YP_008377128.1|	-	0.017	15.2	0.0	0.46	10.6	0.0	2.8	3	0	0	3	3	3	0	Zincin-like	metallopeptidase
TBX	PF12598.8	gi|529078125|ref|YP_008377128.1|	-	0.1	13.4	1.4	0.54	11.1	0.4	2.7	2	0	0	2	2	2	0	T-box	transcription	factor
Cadherin-like	PF12733.7	gi|529078125|ref|YP_008377128.1|	-	4.3	7.9	9.7	0.14	12.7	1.2	3.0	2	1	1	3	3	3	0	Cadherin-like	beta	sandwich	domain
TrmB	PF01978.19	gi|529078126|ref|YP_008377129.1|	-	1e-18	66.9	0.0	1.8e-18	66.2	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|529078126|ref|YP_008377129.1|	-	0.00028	20.6	0.1	0.00047	19.9	0.1	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|529078126|ref|YP_008377129.1|	-	0.00068	19.9	0.0	0.0012	19.1	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
MarR_2	PF12802.7	gi|529078126|ref|YP_008377129.1|	-	0.0046	16.8	0.0	0.01	15.7	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|529078126|ref|YP_008377129.1|	-	0.031	14.3	0.2	0.1	12.7	0.0	2.0	3	0	0	3	3	3	0	Helix-turn-helix	domain
HTH_34	PF13601.6	gi|529078126|ref|YP_008377129.1|	-	0.05	13.8	0.0	0.084	13.1	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_43	PF09904.9	gi|529078126|ref|YP_008377129.1|	-	0.075	13.0	0.0	0.14	12.1	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_24	PF13412.6	gi|529078126|ref|YP_008377129.1|	-	0.14	11.8	0.0	0.26	10.9	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Aminotran_3	PF00202.21	gi|529078127|ref|YP_008377130.1|	-	8.1e-70	235.5	0.0	1.1e-69	235.1	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.21	gi|529078127|ref|YP_008377130.1|	-	2e-05	24.0	0.0	4.6e-05	22.8	0.0	1.6	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
TPR_1	PF00515.28	gi|529078127|ref|YP_008377130.1|	-	0.025	14.4	0.3	1.4	8.8	0.7	2.3	2	0	0	2	2	2	0	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|529078127|ref|YP_008377130.1|	-	0.06	13.5	1.0	10	6.5	0.9	2.4	2	0	0	2	2	2	0	Tetratricopeptide	repeat
Neuregulin	PF02158.15	gi|529078127|ref|YP_008377130.1|	-	0.067	12.5	0.0	0.099	12.0	0.0	1.1	1	0	0	1	1	1	0	Neuregulin	intracellular	region
DDE_Tnp_1	PF01609.21	gi|529078129|ref|YP_008377132.1|	-	0.075	12.7	0.0	0.47	10.1	0.0	2.0	1	1	0	1	1	1	0	Transposase	DDE	domain
Methyltransf_25	PF13649.6	gi|529078130|ref|YP_008377133.1|	-	2.1e-13	50.7	0.0	3.8e-13	50.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|529078130|ref|YP_008377133.1|	-	5.9e-13	49.3	0.0	9.8e-13	48.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|529078130|ref|YP_008377133.1|	-	2.3e-10	40.5	0.0	3.4e-10	40.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|529078130|ref|YP_008377133.1|	-	5e-08	32.8	0.0	6.6e-08	32.4	0.0	1.1	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_31	PF13847.6	gi|529078130|ref|YP_008377133.1|	-	2.7e-07	30.5	0.0	3.5e-07	30.1	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|529078130|ref|YP_008377133.1|	-	6.2e-07	30.1	0.0	1.1e-06	29.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_9	PF08003.11	gi|529078130|ref|YP_008377133.1|	-	8.7e-05	21.6	0.0	0.00011	21.2	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
TehB	PF03848.14	gi|529078130|ref|YP_008377133.1|	-	0.016	14.6	0.0	0.021	14.3	0.0	1.4	1	1	0	1	1	1	0	Tellurite	resistance	protein	TehB
DUF938	PF06080.12	gi|529078130|ref|YP_008377133.1|	-	0.045	13.5	0.0	0.095	12.5	0.0	1.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF938)
Methyltransf_17	PF12692.7	gi|529078130|ref|YP_008377133.1|	-	0.091	12.8	0.0	0.13	12.3	0.0	1.3	1	0	0	1	1	1	0	S-adenosyl-L-methionine	methyltransferase
Pox_MCEL	PF03291.16	gi|529078130|ref|YP_008377133.1|	-	0.11	11.6	0.0	0.13	11.4	0.0	1.1	1	0	0	1	1	1	0	mRNA	capping	enzyme
Methyltransf_PK	PF05891.12	gi|529078130|ref|YP_008377133.1|	-	0.16	11.4	0.0	0.19	11.2	0.0	1.1	1	0	0	1	1	1	0	AdoMet	dependent	proline	di-methyltransferase
Methyltransf_33	PF10017.9	gi|529078130|ref|YP_008377133.1|	-	0.17	11.0	0.0	0.22	10.6	0.0	1.1	1	0	0	1	1	1	0	Histidine-specific	methyltransferase,	SAM-dependent
Cupin_2	PF07883.11	gi|529078131|ref|YP_008377134.1|	-	3.2e-13	49.2	0.1	4.3e-13	48.8	0.1	1.1	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.19	gi|529078131|ref|YP_008377134.1|	-	5.8e-08	32.7	0.0	7.2e-08	32.4	0.0	1.1	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_3	PF05899.12	gi|529078131|ref|YP_008377134.1|	-	0.00041	20.0	0.0	0.00051	19.7	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
Ppnp	PF06865.11	gi|529078131|ref|YP_008377134.1|	-	0.002	18.5	0.0	0.0028	18.0	0.0	1.1	1	0	0	1	1	1	1	Pyrimidine/purine	nucleoside	phosphorylase
Cupin_6	PF12852.7	gi|529078131|ref|YP_008377134.1|	-	0.0028	17.4	0.1	0.0033	17.2	0.1	1.2	1	0	0	1	1	1	1	Cupin
Pirin_C_2	PF17954.1	gi|529078131|ref|YP_008377134.1|	-	0.0049	17.0	0.0	0.008	16.3	0.0	1.3	1	1	0	1	1	1	1	Quercetinase	C-terminal	cupin	domain
MannoseP_isomer	PF01050.18	gi|529078131|ref|YP_008377134.1|	-	0.0062	16.4	0.0	0.0069	16.3	0.0	1.1	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
AraC_binding_2	PF14525.6	gi|529078131|ref|YP_008377134.1|	-	0.009	15.7	0.1	0.012	15.3	0.1	1.3	1	0	0	1	1	1	1	AraC-binding-like	domain
KduI	PF04962.12	gi|529078131|ref|YP_008377134.1|	-	0.0093	15.3	0.0	0.011	15.1	0.0	1.1	1	0	0	1	1	1	1	KduI/IolB	family
DUF2917	PF11142.8	gi|529078131|ref|YP_008377134.1|	-	0.019	14.3	0.0	0.038	13.4	0.0	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2917)
HutD	PF05962.11	gi|529078131|ref|YP_008377134.1|	-	0.045	13.7	0.0	0.053	13.5	0.0	1.1	1	0	0	1	1	1	0	HutD
Phi29_Phage_SSB	PF17427.2	gi|529078131|ref|YP_008377134.1|	-	0.064	13.4	0.1	0.082	13.1	0.1	1.3	1	1	0	1	1	1	0	Phage	Single-stranded	DNA-binding	protein
Cupin_1	PF00190.22	gi|529078131|ref|YP_008377134.1|	-	0.17	11.5	0.0	0.2	11.3	0.0	1.2	1	0	0	1	1	1	0	Cupin
Lyx_isomer	PF07385.12	gi|529078131|ref|YP_008377134.1|	-	0.17	11.1	0.0	0.18	11.1	0.0	1.1	1	0	0	1	1	1	0	D-lyxose	isomerase
LDcluster4	PF18306.1	gi|529078132|ref|YP_008377135.1|	-	2.7e-41	140.8	3.7	2.8e-41	140.7	3.7	1.0	1	0	0	1	1	1	1	SLOG	cluster4	family
Lysine_decarbox	PF03641.14	gi|529078132|ref|YP_008377135.1|	-	3.2e-07	30.5	0.2	5.4e-07	29.8	0.2	1.4	1	1	0	1	1	1	1	Possible	lysine	decarboxylase
DNA_processg_A	PF02481.15	gi|529078132|ref|YP_008377135.1|	-	4.6e-07	29.3	1.9	4e-05	23.0	0.6	2.0	1	1	1	2	2	2	2	DNA	recombination-mediator	protein	A
cpYpsA	PF12694.7	gi|529078132|ref|YP_008377135.1|	-	0.0068	16.2	0.4	0.0088	15.8	0.4	1.1	1	0	0	1	1	1	1	Circularly	permutated	YpsA	SLOG	family
Nuc_deoxyrib_tr	PF05014.15	gi|529078132|ref|YP_008377135.1|	-	0.12	12.4	0.2	0.13	12.3	0.2	1.4	1	1	0	1	1	1	0	Nucleoside	2-deoxyribosyltransferase
HTH_ParB	PF17762.1	gi|529078135|ref|YP_008377138.1|	-	0.085	12.7	0.0	0.14	12.0	0.0	1.4	1	0	0	1	1	1	0	HTH	domain	found	in	ParB	protein
Glyco_hydro_11	PF00457.17	gi|529078136|ref|YP_008377139.1|	-	9.9e-75	250.1	13.6	9.9e-75	250.1	13.6	2.5	2	1	0	2	2	2	1	Glycosyl	hydrolases	family	11
RicinB_lectin_2	PF14200.6	gi|529078136|ref|YP_008377139.1|	-	1.1e-35	122.1	26.7	7.6e-24	84.3	10.3	3.4	4	0	0	4	4	4	2	Ricin-type	beta-trefoil	lectin	domain-like
Ricin_B_lectin	PF00652.22	gi|529078136|ref|YP_008377139.1|	-	1.3e-16	61.0	10.6	1.6e-12	47.8	1.3	2.6	2	1	1	3	3	3	2	Ricin-type	beta-trefoil	lectin	domain
TAT_signal	PF10518.9	gi|529078136|ref|YP_008377139.1|	-	0.00068	19.4	3.3	0.00068	19.4	3.3	1.6	1	1	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Glyco_hydro_11	PF00457.17	gi|529078137|ref|YP_008377140.1|	-	2.5e-77	258.5	15.9	2.5e-77	258.5	15.9	2.6	3	0	0	3	3	3	1	Glycosyl	hydrolases	family	11
CBM_6	PF03422.15	gi|529078137|ref|YP_008377140.1|	-	4.8e-20	72.1	6.3	4.8e-20	72.1	6.3	4.1	4	4	2	6	6	6	1	Carbohydrate	binding	module	(family	6)
DUF5010_C	PF18099.1	gi|529078137|ref|YP_008377140.1|	-	4.8e-12	46.0	0.6	1.6e-11	44.3	0.6	1.9	1	0	0	1	1	1	1	DUF5010	C-terminal	domain
PKD	PF00801.20	gi|529078137|ref|YP_008377140.1|	-	4.4e-07	29.6	2.6	4.4e-07	29.6	2.6	3.0	2	1	0	2	2	2	1	PKD	domain
CBM_35	PF16990.5	gi|529078137|ref|YP_008377140.1|	-	2.7e-05	24.4	1.6	2.7e-05	24.4	1.6	2.4	2	0	0	2	2	2	1	Carbohydrate	binding	module	(family	35)
TAT_signal	PF10518.9	gi|529078137|ref|YP_008377140.1|	-	0.0015	18.3	0.5	0.0034	17.2	0.5	1.6	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Wzt_C	PF14524.6	gi|529078137|ref|YP_008377140.1|	-	0.12	12.5	0.6	1.6	8.8	0.1	2.6	2	0	0	2	2	2	0	Wzt	C-terminal	domain
DUF5011	PF16403.5	gi|529078137|ref|YP_008377140.1|	-	1.3	9.2	6.1	3.4	7.8	1.0	3.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF5011)
Peripla_BP_2	PF01497.18	gi|529078138|ref|YP_008377141.1|	-	5.8e-19	68.6	0.0	8.4e-19	68.1	0.0	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
DUF1501	PF07394.12	gi|529078138|ref|YP_008377141.1|	-	0.15	11.0	0.0	0.24	10.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1501)
Usp	PF00582.26	gi|529078139|ref|YP_008377142.1|	-	6.4e-08	33.2	0.4	9.8e-08	32.6	0.4	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF2092	PF09865.9	gi|529078140|ref|YP_008377143.1|	-	0.028	13.8	0.9	0.37	10.1	0.0	2.7	3	0	0	3	3	3	0	Predicted	periplasmic	protein	(DUF2092)
ABC_tran	PF00005.27	gi|529078141|ref|YP_008377144.1|	-	1.2e-33	116.5	0.0	1.6e-33	116.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529078141|ref|YP_008377144.1|	-	3e-06	27.3	0.5	0.063	13.1	0.1	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|529078141|ref|YP_008377144.1|	-	5.7e-06	25.9	0.0	0.027	13.9	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|529078141|ref|YP_008377144.1|	-	6.2e-05	22.6	0.8	0.00011	21.8	0.8	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|529078141|ref|YP_008377144.1|	-	0.001	19.5	0.2	0.0017	18.8	0.2	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|529078141|ref|YP_008377144.1|	-	0.0012	18.8	0.3	0.002	18.1	0.3	1.3	1	0	0	1	1	1	1	RsgA	GTPase
AAA_22	PF13401.6	gi|529078141|ref|YP_008377144.1|	-	0.018	15.3	0.9	0.033	14.5	0.3	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|529078141|ref|YP_008377144.1|	-	0.018	14.8	1.1	0.07	12.8	1.1	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|529078141|ref|YP_008377144.1|	-	0.035	13.7	1.9	0.037	13.6	0.2	1.9	2	1	0	2	2	2	0	AAA	domain
AAA_23	PF13476.6	gi|529078141|ref|YP_008377144.1|	-	0.082	13.4	0.2	0.12	12.8	0.2	1.2	1	0	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|529078141|ref|YP_008377144.1|	-	0.092	12.8	0.4	0.4	10.8	0.2	2.0	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_33	PF13671.6	gi|529078141|ref|YP_008377144.1|	-	0.25	11.5	1.1	0.58	10.3	1.1	1.8	1	1	0	1	1	1	0	AAA	domain
MacB_PCD	PF12704.7	gi|529078142|ref|YP_008377145.1|	-	2.3e-19	70.5	11.4	2.3e-19	70.5	11.4	2.1	3	0	0	3	3	3	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.21	gi|529078142|ref|YP_008377145.1|	-	2e-16	60.2	1.2	2e-16	60.2	1.2	3.1	3	0	0	3	3	3	1	FtsX-like	permease	family
UPF0182	PF03699.13	gi|529078142|ref|YP_008377145.1|	-	0.15	10.2	0.6	0.27	9.3	0.6	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0182)
Phage_holin_2_1	PF04971.12	gi|529078142|ref|YP_008377145.1|	-	3.2	7.8	5.2	3.3	7.8	0.6	2.8	2	0	0	2	2	2	0	Bacteriophage	P21	holin	S
Rep_fac_C	PF08542.11	gi|529078143|ref|YP_008377146.1|	-	4.8e-12	46.1	0.0	1.6e-11	44.5	0.0	1.9	1	0	0	1	1	1	1	Replication	factor	C	C-terminal	domain
DNA_pol3_delta2	PF13177.6	gi|529078143|ref|YP_008377146.1|	-	4.8e-11	42.7	0.0	8.6e-11	41.9	0.0	1.4	1	1	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
AAA_16	PF13191.6	gi|529078143|ref|YP_008377146.1|	-	4.3e-09	37.0	0.4	6.3e-08	33.2	0.1	2.4	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|529078143|ref|YP_008377146.1|	-	1.2e-08	35.5	0.0	2.4e-08	34.5	0.0	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|529078143|ref|YP_008377146.1|	-	1.5e-08	35.0	0.0	4.3e-08	33.5	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
Sigma54_activat	PF00158.26	gi|529078143|ref|YP_008377146.1|	-	0.00019	21.2	0.0	0.011	15.4	0.0	2.3	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_24	PF13479.6	gi|529078143|ref|YP_008377146.1|	-	0.00039	20.2	0.0	0.0006	19.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
T2SSE	PF00437.20	gi|529078143|ref|YP_008377146.1|	-	0.00073	18.7	0.0	0.058	12.4	0.0	2.6	3	0	0	3	3	3	1	Type	II/IV	secretion	system	protein
NACHT	PF05729.12	gi|529078143|ref|YP_008377146.1|	-	0.00087	19.2	0.0	0.0016	18.4	0.0	1.3	1	0	0	1	1	1	1	NACHT	domain
DUF2075	PF09848.9	gi|529078143|ref|YP_008377146.1|	-	0.0011	18.3	0.0	0.0016	17.8	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_14	PF13173.6	gi|529078143|ref|YP_008377146.1|	-	0.0019	18.2	0.0	0.0055	16.7	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|529078143|ref|YP_008377146.1|	-	0.0029	17.3	0.1	0.01	15.6	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
TniB	PF05621.11	gi|529078143|ref|YP_008377146.1|	-	0.015	14.7	0.0	0.046	13.1	0.0	1.7	2	0	0	2	2	2	0	Bacterial	TniB	protein
Viral_helicase1	PF01443.18	gi|529078143|ref|YP_008377146.1|	-	0.016	14.9	0.0	0.025	14.3	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
Zeta_toxin	PF06414.12	gi|529078143|ref|YP_008377146.1|	-	0.037	13.3	0.2	0.13	11.5	0.2	1.9	1	1	0	1	1	1	0	Zeta	toxin
IstB_IS21	PF01695.17	gi|529078143|ref|YP_008377146.1|	-	0.039	13.7	0.1	0.18	11.5	0.0	1.9	1	1	0	2	2	2	0	IstB-like	ATP	binding	protein
FtsK_SpoIIIE	PF01580.18	gi|529078143|ref|YP_008377146.1|	-	0.052	12.9	0.0	0.24	10.7	0.0	2.1	3	0	0	3	3	3	0	FtsK/SpoIIIE	family
AAA_33	PF13671.6	gi|529078143|ref|YP_008377146.1|	-	0.055	13.6	0.0	0.1	12.7	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_11	PF13086.6	gi|529078143|ref|YP_008377146.1|	-	0.06	13.1	0.0	0.13	12.1	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|529078143|ref|YP_008377146.1|	-	0.068	13.7	0.0	0.41	11.2	0.0	2.2	1	1	0	1	1	1	0	AAA	domain
TcpQ	PF10671.9	gi|529078143|ref|YP_008377146.1|	-	0.075	13.2	0.1	3.3	7.9	0.1	2.6	2	0	0	2	2	2	0	Toxin	co-regulated	pilus	biosynthesis	protein	Q
DEAD	PF00270.29	gi|529078143|ref|YP_008377146.1|	-	0.077	12.8	0.0	15	5.3	0.0	2.3	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
AAA_assoc_2	PF16193.5	gi|529078143|ref|YP_008377146.1|	-	0.086	13.2	0.2	0.37	11.2	0.1	2.2	1	1	1	2	2	2	0	AAA	C-terminal	domain
TsaE	PF02367.17	gi|529078143|ref|YP_008377146.1|	-	0.099	12.6	0.0	0.19	11.7	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Rad17	PF03215.15	gi|529078143|ref|YP_008377146.1|	-	0.13	12.2	0.0	0.22	11.4	0.0	1.4	1	1	0	1	1	1	0	Rad17	P-loop	domain
ATP_bind_1	PF03029.17	gi|529078143|ref|YP_008377146.1|	-	0.14	11.9	0.1	2.9	7.6	0.0	2.3	1	1	1	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AAA_6	PF12774.7	gi|529078143|ref|YP_008377146.1|	-	0.18	10.7	0.0	0.34	9.8	0.0	1.4	1	0	0	1	1	1	0	Hydrolytic	ATP	binding	site	of	dynein	motor	region
TPR_6	PF13174.6	gi|529078143|ref|YP_008377146.1|	-	1.6	9.6	3.6	1.5e+02	3.4	0.0	4.4	5	1	0	5	5	3	0	Tetratricopeptide	repeat
Ribosomal_S24e	PF01282.19	gi|529078144|ref|YP_008377147.1|	-	5.4e-27	93.6	0.1	7.4e-27	93.1	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S24e
Ribosomal_S27	PF01599.19	gi|529078145|ref|YP_008377148.1|	-	4.8e-09	36.2	6.4	5.5e-09	36.1	6.1	1.3	1	1	0	1	1	1	1	Ribosomal	protein	S27a
RNA_POL_M_15KD	PF02150.16	gi|529078145|ref|YP_008377148.1|	-	0.0052	16.6	0.4	0.008	16.0	0.4	1.3	1	0	0	1	1	1	1	RNA	polymerases	M/15	Kd	subunit
FYVE	PF01363.21	gi|529078145|ref|YP_008377148.1|	-	0.0094	16.1	1.1	0.011	15.8	1.1	1.1	1	0	0	1	1	1	1	FYVE	zinc	finger
Nudix_N_2	PF14803.6	gi|529078145|ref|YP_008377148.1|	-	0.016	15.1	6.5	0.9	9.5	0.8	2.1	2	0	0	2	2	2	0	Nudix	N-terminal
zinc_ribbon_9	PF14369.6	gi|529078145|ref|YP_008377148.1|	-	0.029	14.6	0.3	0.029	14.6	0.3	1.9	1	1	1	2	2	2	0	zinc-ribbon
OrfB_Zn_ribbon	PF07282.11	gi|529078145|ref|YP_008377148.1|	-	0.054	13.4	1.2	0.059	13.3	1.2	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.12	gi|529078145|ref|YP_008377148.1|	-	0.08	12.5	4.7	0.091	12.3	3.5	1.7	1	1	1	2	2	2	0	TFIIB	zinc-binding
zf_UBZ	PF18439.1	gi|529078145|ref|YP_008377148.1|	-	0.095	12.3	1.8	0.51	10.0	0.1	2.1	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-ribbon_3	PF13248.6	gi|529078145|ref|YP_008377148.1|	-	0.17	11.3	5.2	0.74	9.3	5.2	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
HypA	PF01155.19	gi|529078145|ref|YP_008377148.1|	-	0.19	11.7	0.5	0.2	11.7	0.5	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|529078145|ref|YP_008377148.1|	-	1.3	9.2	5.4	1.7	8.8	0.5	2.1	1	1	1	2	2	2	0	Zinc	ribbon	domain
adh_short_C2	PF13561.6	gi|529078146|ref|YP_008377149.1|	-	4.2e-75	252.3	3.3	4.7e-75	252.2	3.3	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|529078146|ref|YP_008377149.1|	-	1.4e-63	213.9	3.0	1.8e-63	213.6	3.0	1.0	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|529078146|ref|YP_008377149.1|	-	3.5e-13	49.9	0.3	5.3e-13	49.3	0.3	1.3	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|529078146|ref|YP_008377149.1|	-	3e-06	26.9	0.5	5.6e-06	26.0	0.5	1.6	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Neisseria_PilC	PF05567.11	gi|529078146|ref|YP_008377149.1|	-	0.0062	15.6	1.3	0.0066	15.5	0.3	1.5	2	0	0	2	2	2	1	Neisseria	PilC	beta-propeller	domain
GDP_Man_Dehyd	PF16363.5	gi|529078146|ref|YP_008377149.1|	-	0.019	14.4	0.0	0.076	12.4	0.0	1.8	2	0	0	2	2	2	0	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|529078146|ref|YP_008377149.1|	-	0.089	11.8	0.8	0.12	11.4	0.8	1.3	1	1	0	1	1	1	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Peptidase_M22	PF00814.25	gi|529078147|ref|YP_008377150.1|	-	1.9e-77	260.6	0.0	2.6e-77	260.2	0.0	1.1	1	0	0	1	1	1	1	Glycoprotease	family
APH	PF01636.23	gi|529078147|ref|YP_008377150.1|	-	4.6e-06	26.7	5.3	0.011	15.7	1.9	2.4	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Kdo	PF06293.14	gi|529078147|ref|YP_008377150.1|	-	0.0029	17.0	0.2	0.0082	15.5	0.2	1.7	1	1	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
RIO1	PF01163.22	gi|529078147|ref|YP_008377150.1|	-	0.01	15.4	0.0	0.025	14.2	0.0	1.6	1	1	0	1	1	1	0	RIO1	family
ROK	PF00480.20	gi|529078147|ref|YP_008377150.1|	-	0.045	13.2	0.0	0.11	12.0	0.0	1.6	1	0	0	1	1	1	0	ROK	family
Pkinase	PF00069.25	gi|529078147|ref|YP_008377150.1|	-	0.11	11.9	0.0	0.17	11.2	0.0	1.2	1	0	0	1	1	1	0	Protein	kinase	domain
Pkinase_Tyr	PF07714.17	gi|529078147|ref|YP_008377150.1|	-	0.22	10.8	0.0	0.31	10.3	0.0	1.2	1	0	0	1	1	1	0	Protein	tyrosine	kinase
DEAD	PF00270.29	gi|529078148|ref|YP_008377151.1|	-	1.2e-17	64.3	0.0	2.1e-17	63.5	0.0	1.4	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|529078148|ref|YP_008377151.1|	-	9.1e-13	48.5	0.0	2.2e-12	47.3	0.0	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|529078148|ref|YP_008377151.1|	-	3.8e-08	33.5	0.0	6.8e-08	32.7	0.0	1.3	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Peptidase_M48	PF01435.18	gi|529078149|ref|YP_008377152.1|	-	1.6e-26	93.3	0.0	2.3e-26	92.8	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|529078149|ref|YP_008377152.1|	-	0.00014	21.2	5.2	0.0021	17.3	0.0	3.1	2	1	0	3	3	3	2	BlaR1	peptidase	M56
SprT-like	PF10263.9	gi|529078149|ref|YP_008377152.1|	-	0.01	15.7	0.0	0.016	15.0	0.0	1.3	1	0	0	1	1	1	1	SprT-like	family
DUF21	PF01595.20	gi|529078149|ref|YP_008377152.1|	-	0.46	10.2	0.1	0.46	10.2	0.1	2.3	2	0	0	2	2	2	0	Cyclin	M	transmembrane	N-terminal	domain
DUF4129	PF13559.6	gi|529078150|ref|YP_008377153.1|	-	3.3e-08	33.7	7.2	3.3e-08	33.7	7.2	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4129)
CarboxypepD_reg	PF13620.6	gi|529078150|ref|YP_008377153.1|	-	0.00015	22.0	12.9	0.069	13.4	1.0	3.7	3	0	0	3	3	3	2	Carboxypeptidase	regulatory-like	domain
YtkA	PF13115.6	gi|529078150|ref|YP_008377153.1|	-	0.016	15.8	2.9	6.2	7.5	0.1	3.0	3	0	0	3	3	3	0	YtkA-like
Phage_holin_3_6	PF07332.11	gi|529078151|ref|YP_008377154.1|	-	0.17	11.9	5.7	0.35	10.9	5.7	1.5	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF58	PF01882.18	gi|529078152|ref|YP_008377155.1|	-	2e-18	66.5	2.4	3.5e-18	65.7	1.5	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF58
DUF11	PF01345.18	gi|529078152|ref|YP_008377155.1|	-	0.0048	17.2	0.8	0.0048	17.2	0.8	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF11
NPCBM_assoc	PF10633.9	gi|529078152|ref|YP_008377155.1|	-	0.0081	16.4	1.0	0.025	14.8	0.6	2.1	1	1	0	1	1	1	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
PBP_like	PF12727.7	gi|529078152|ref|YP_008377155.1|	-	0.11	11.6	0.0	0.22	10.6	0.0	1.4	1	0	0	1	1	1	0	PBP	superfamily	domain
AAA_3	PF07726.11	gi|529078154|ref|YP_008377157.1|	-	1e-64	216.2	0.1	1.8e-64	215.5	0.1	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|529078154|ref|YP_008377157.1|	-	2.8e-20	71.9	1.6	6.6e-20	70.7	1.6	1.7	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|529078154|ref|YP_008377157.1|	-	1.4e-16	60.7	0.0	4.2e-16	59.2	0.0	1.8	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|529078154|ref|YP_008377157.1|	-	5e-07	30.2	0.0	5.9e-06	26.7	0.0	2.3	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|529078154|ref|YP_008377157.1|	-	3e-05	23.8	0.0	0.018	14.8	0.0	2.1	2	0	0	2	2	2	2	Sigma-54	interaction	domain
MCM	PF00493.23	gi|529078154|ref|YP_008377157.1|	-	0.013	14.6	0.0	0.018	14.1	0.0	1.3	1	0	0	1	1	1	0	MCM	P-loop	domain
Mg_chelatase	PF01078.21	gi|529078154|ref|YP_008377157.1|	-	0.033	13.6	0.1	1.6	8.1	0.0	2.2	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
RuvB_N	PF05496.12	gi|529078154|ref|YP_008377157.1|	-	0.065	13.0	0.0	0.85	9.4	0.0	2.3	1	1	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
CitMHS	PF03600.16	gi|529078155|ref|YP_008377158.1|	-	3.5e-56	190.6	7.8	3.5e-56	190.6	7.8	1.7	1	1	1	2	2	2	1	Citrate	transporter
TrkA_C	PF02080.21	gi|529078155|ref|YP_008377158.1|	-	4.2e-19	68.1	6.5	1.8e-13	50.1	0.6	2.5	2	0	0	2	2	2	2	TrkA-C	domain
Na_sulph_symp	PF00939.19	gi|529078155|ref|YP_008377158.1|	-	1.3e-18	67.3	37.4	2.1e-13	50.1	15.2	3.3	2	1	1	3	3	3	3	Sodium:sulfate	symporter	transmembrane	region
5_nucleotid_C	PF02872.18	gi|529078156|ref|YP_008377159.1|	-	3.1e-32	112.0	0.5	1.6e-31	109.6	0.2	2.2	2	0	0	2	2	2	1	5'-nucleotidase,	C-terminal	domain
Metallophos	PF00149.28	gi|529078156|ref|YP_008377159.1|	-	1.2e-05	25.9	0.0	2.2e-05	25.1	0.0	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Dockerin_1	PF00404.18	gi|529078156|ref|YP_008377159.1|	-	0.00012	22.2	7.4	0.00066	19.8	7.4	2.4	1	0	0	1	1	1	1	Dockerin	type	I	domain
EF-hand_7	PF13499.6	gi|529078156|ref|YP_008377159.1|	-	0.096	13.1	0.8	8.6	6.9	0.1	2.7	1	1	1	2	2	2	0	EF-hand	domain	pair
EF-hand_6	PF13405.6	gi|529078156|ref|YP_008377159.1|	-	0.4	10.7	9.1	1.7	8.7	0.4	3.0	3	0	0	3	3	3	0	EF-hand	domain
BofA	PF07441.11	gi|529078157|ref|YP_008377160.1|	-	9.8e-07	28.9	20.0	1.3e-06	28.5	20.0	1.2	1	0	0	1	1	1	1	SigmaK-factor	processing	regulatory	protein	BofA
TraP	PF07296.11	gi|529078157|ref|YP_008377160.1|	-	3.6	6.7	6.3	4.8	6.3	6.3	1.2	1	0	0	1	1	1	0	TraP	protein
PIN	PF01850.21	gi|529078160|ref|YP_008377163.1|	-	9.2e-13	48.8	0.0	1.3e-12	48.3	0.0	1.1	1	0	0	1	1	1	1	PIN	domain
VAPB_antitox	PF02697.14	gi|529078162|ref|YP_008377165.1|	-	6.8e-05	23.6	0.1	9.5e-05	23.1	0.1	1.3	1	0	0	1	1	1	1	Putative	antitoxin
PIN	PF01850.21	gi|529078163|ref|YP_008377166.1|	-	9.9e-10	39.0	0.0	1.2e-09	38.8	0.0	1.0	1	0	0	1	1	1	1	PIN	domain
DUF2222	PF09984.9	gi|529078163|ref|YP_008377166.1|	-	0.052	13.4	0.0	0.069	13.0	0.0	1.1	1	0	0	1	1	1	0	Uncharacterised	signal	transduction	histidine	kinase	domain	(DUF2222)
PHP	PF02811.19	gi|529078164|ref|YP_008377167.1|	-	3.3e-06	27.5	0.0	3.5e-06	27.4	0.0	1.3	1	0	0	1	1	1	1	PHP	domain
PHP_C	PF13263.6	gi|529078164|ref|YP_008377167.1|	-	0.069	12.9	0.1	0.18	11.6	0.1	1.7	1	0	0	1	1	1	0	PHP-associated
E3_UbLigase_RBR	PF18091.1	gi|529078165|ref|YP_008377168.1|	-	0.12	12.5	0.0	0.13	12.4	0.0	1.2	1	0	0	1	1	1	0	E3	Ubiquitin	Ligase	RBR	C-terminal	domain
Abhydrolase_1	PF00561.20	gi|529078166|ref|YP_008377169.1|	-	1.8e-19	70.4	0.1	7.5e-12	45.4	0.1	2.1	2	0	0	2	2	2	2	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|529078166|ref|YP_008377169.1|	-	1.4e-15	58.5	14.1	1.6e-15	58.3	14.1	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|529078166|ref|YP_008377169.1|	-	5.7e-15	55.2	0.1	1.2e-14	54.1	0.1	1.5	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_5	PF12695.7	gi|529078166|ref|YP_008377169.1|	-	0.0003	20.6	0.0	0.081	12.7	0.0	2.2	2	0	0	2	2	2	2	Alpha/beta	hydrolase	family
Abhydrolase_4	PF08386.10	gi|529078166|ref|YP_008377169.1|	-	0.0047	17.0	0.0	0.0075	16.4	0.0	1.4	1	0	0	1	1	1	1	TAP-like	protein
DLH	PF01738.18	gi|529078166|ref|YP_008377169.1|	-	0.0075	15.8	0.0	0.91	9.0	0.0	2.2	2	0	0	2	2	2	1	Dienelactone	hydrolase	family
UPF0227	PF05728.12	gi|529078166|ref|YP_008377169.1|	-	0.011	15.6	0.0	0.022	14.7	0.0	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0227)
FSH1	PF03959.13	gi|529078166|ref|YP_008377169.1|	-	0.017	14.8	0.0	0.025	14.2	0.0	1.2	1	0	0	1	1	1	0	Serine	hydrolase	(FSH1)
Peptidase_S9	PF00326.21	gi|529078166|ref|YP_008377169.1|	-	0.092	12.2	0.0	0.17	11.4	0.0	1.4	1	0	0	1	1	1	0	Prolyl	oligopeptidase	family
TubC_N	PF18563.1	gi|529078166|ref|YP_008377169.1|	-	0.14	12.1	0.0	0.33	11.0	0.0	1.6	1	0	0	1	1	1	0	TubC	N-terminal	docking	domain
DICT	PF10069.9	gi|529078167|ref|YP_008377170.1|	-	3.7e-06	26.7	0.0	6.8e-06	25.9	0.0	1.4	1	0	0	1	1	1	1	Sensory	domain	in	DIguanylate	Cyclases	and	Two-component	system
tRNA-synt_2c	PF01411.19	gi|529078168|ref|YP_008377171.1|	-	1.1e-120	403.8	0.0	1.4e-120	403.5	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
DHHA1	PF02272.19	gi|529078168|ref|YP_008377171.1|	-	1.3e-15	58.0	1.4	3.2e-15	56.8	0.7	2.1	2	1	1	3	3	3	1	DHHA1	domain
tRNA_SAD	PF07973.14	gi|529078168|ref|YP_008377171.1|	-	2.2e-12	46.9	1.3	4.3e-12	45.9	1.3	1.5	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
TrbI_Ftype	PF09677.10	gi|529078168|ref|YP_008377171.1|	-	1.1	9.6	5.3	0.16	12.3	0.3	2.2	3	0	0	3	3	3	0	Type-F	conjugative	transfer	system	protein	(TrbI_Ftype)
Sensor	PF13796.6	gi|529078169|ref|YP_008377172.1|	-	3.1e-40	137.9	28.2	3.6e-40	137.7	28.2	1.0	1	0	0	1	1	1	1	Putative	sensor
Deltameth_res	PF16020.5	gi|529078169|ref|YP_008377172.1|	-	9.6	6.2	5.6	1	9.3	0.5	2.0	2	0	0	2	2	2	0	Deltamethrin	resistance
Rep_fac_C	PF08542.11	gi|529078170|ref|YP_008377173.1|	-	1.7e-22	79.6	0.0	3.8e-22	78.5	0.0	1.6	1	0	0	1	1	1	1	Replication	factor	C	C-terminal	domain
Intein_splicing	PF14890.6	gi|529078170|ref|YP_008377173.1|	-	1.6e-15	57.2	0.0	4.9e-15	55.6	0.0	1.9	1	1	0	1	1	1	1	Intein	splicing	domain
AAA	PF00004.29	gi|529078170|ref|YP_008377173.1|	-	2.3e-15	57.2	0.0	7.6e-10	39.3	0.0	2.9	3	0	0	3	3	3	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
DNA_pol3_delta2	PF13177.6	gi|529078170|ref|YP_008377173.1|	-	2.9e-10	40.2	0.0	8.9e-06	25.6	0.0	2.7	2	1	1	3	3	3	2	DNA	polymerase	III,	delta	subunit
Rad17	PF03215.15	gi|529078170|ref|YP_008377173.1|	-	1.8e-07	31.3	0.0	4.8e-07	29.9	0.0	1.7	2	0	0	2	2	2	1	Rad17	P-loop	domain
RuvB_N	PF05496.12	gi|529078170|ref|YP_008377173.1|	-	6.5e-06	26.0	0.0	1.2e-05	25.1	0.0	1.4	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_assoc_2	PF16193.5	gi|529078170|ref|YP_008377173.1|	-	5.6e-05	23.4	0.0	0.00016	21.9	0.0	1.8	1	0	0	1	1	1	1	AAA	C-terminal	domain
AAA_16	PF13191.6	gi|529078170|ref|YP_008377173.1|	-	0.0016	18.9	0.3	0.006	17.0	0.0	2.1	2	0	0	2	2	1	1	AAA	ATPase	domain
AAA_14	PF13173.6	gi|529078170|ref|YP_008377173.1|	-	0.0026	17.8	0.0	0.011	15.7	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_18	PF13238.6	gi|529078170|ref|YP_008377173.1|	-	0.0038	17.8	0.0	0.019	15.5	0.0	2.3	1	0	0	1	1	1	1	AAA	domain
ResIII	PF04851.15	gi|529078170|ref|YP_008377173.1|	-	0.0056	16.7	0.0	0.014	15.4	0.0	1.6	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_7	PF12775.7	gi|529078170|ref|YP_008377173.1|	-	0.011	15.2	0.0	0.021	14.3	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
DUF3400	PF11880.8	gi|529078170|ref|YP_008377173.1|	-	0.025	14.1	0.2	0.21	11.1	0.0	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF3400)
AAA_24	PF13479.6	gi|529078170|ref|YP_008377173.1|	-	0.04	13.7	0.0	0.097	12.4	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
HMG_box	PF00505.19	gi|529078170|ref|YP_008377173.1|	-	0.05	14.0	0.5	0.13	12.7	0.5	1.7	1	0	0	1	1	1	0	HMG	(high	mobility	group)	box
RNA_helicase	PF00910.22	gi|529078170|ref|YP_008377173.1|	-	0.06	13.7	0.0	0.21	12.0	0.0	1.9	2	0	0	2	2	1	0	RNA	helicase
IstB_IS21	PF01695.17	gi|529078170|ref|YP_008377173.1|	-	0.06	13.1	0.0	0.12	12.1	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
Phage_endo_I	PF05367.11	gi|529078170|ref|YP_008377173.1|	-	0.065	12.9	0.0	5.7	6.5	0.0	2.4	2	0	0	2	2	2	0	Phage	endonuclease	I
AAA_2	PF07724.14	gi|529078170|ref|YP_008377173.1|	-	0.069	13.3	0.0	0.16	12.0	0.0	1.7	1	0	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
TIP49	PF06068.13	gi|529078170|ref|YP_008377173.1|	-	0.098	11.8	0.0	0.17	11.1	0.0	1.3	1	0	0	1	1	1	0	TIP49	P-loop	domain
DNA_pol3_delta	PF06144.13	gi|529078170|ref|YP_008377173.1|	-	0.099	12.4	0.0	0.22	11.3	0.0	1.5	1	0	0	1	1	1	0	DNA	polymerase	III,	delta	subunit
Viral_helicase1	PF01443.18	gi|529078170|ref|YP_008377173.1|	-	0.099	12.4	0.0	0.19	11.4	0.0	1.4	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA_23	PF13476.6	gi|529078170|ref|YP_008377173.1|	-	0.12	12.8	0.0	0.28	11.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|529078170|ref|YP_008377173.1|	-	0.17	12.1	0.1	1.3	9.3	0.0	2.4	2	1	1	3	3	2	0	AAA	domain
HMG_box_2	PF09011.10	gi|529078170|ref|YP_008377173.1|	-	0.25	12.0	1.9	0.59	10.8	1.9	1.5	1	0	0	1	1	1	0	HMG-box	domain
Acetyltransf_7	PF13508.7	gi|529078172|ref|YP_008377175.1|	-	5.1e-07	30.0	0.0	7.2e-07	29.5	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|529078172|ref|YP_008377175.1|	-	2.3e-06	27.5	0.0	2.9e-06	27.2	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|529078172|ref|YP_008377175.1|	-	0.00034	20.8	0.0	0.00043	20.5	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
DDE_Tnp_IS66	PF03050.14	gi|529078173|ref|YP_008377176.1|	-	4.8e-49	167.3	0.1	4.8e-49	167.3	0.1	1.6	2	0	0	2	2	2	1	Transposase	IS66	family
zf-IS66	PF13005.7	gi|529078173|ref|YP_008377176.1|	-	7.4e-06	26.3	2.6	2.1e-05	24.8	2.6	1.8	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
GAS	PF13851.6	gi|529078173|ref|YP_008377176.1|	-	0.00063	19.2	4.5	0.0012	18.2	4.5	1.3	1	0	0	1	1	1	1	Growth-arrest	specific	micro-tubule	binding
bZIP_1	PF00170.21	gi|529078173|ref|YP_008377176.1|	-	0.0022	18.0	4.7	0.005	16.9	4.7	1.6	1	0	0	1	1	1	1	bZIP	transcription	factor
Csm1_N	PF18504.1	gi|529078173|ref|YP_008377176.1|	-	0.0048	17.2	2.4	0.013	15.8	2.4	1.7	1	0	0	1	1	1	1	Csm1	N-terminal	domain
ATG16	PF08614.11	gi|529078173|ref|YP_008377176.1|	-	0.0062	16.8	2.2	0.0062	16.8	2.2	2.4	3	0	0	3	3	2	1	Autophagy	protein	16	(ATG16)
CENP-F_leu_zip	PF10473.9	gi|529078173|ref|YP_008377176.1|	-	0.0065	16.5	7.2	0.017	15.2	7.2	1.6	1	0	0	1	1	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Tropomyosin_1	PF12718.7	gi|529078173|ref|YP_008377176.1|	-	0.0075	16.4	3.9	0.016	15.3	3.9	1.5	1	0	0	1	1	1	1	Tropomyosin	like
Angiomotin_C	PF12240.8	gi|529078173|ref|YP_008377176.1|	-	0.01	15.4	0.4	0.019	14.5	0.4	1.4	1	0	0	1	1	1	0	Angiomotin	C	terminal
MCC-bdg_PDZ	PF10506.9	gi|529078173|ref|YP_008377176.1|	-	0.03	14.3	3.2	0.077	13.0	3.2	1.7	1	0	0	1	1	1	0	PDZ	domain	of	MCC-2	bdg	protein	for	Usher	syndrome
Troponin	PF00992.20	gi|529078173|ref|YP_008377176.1|	-	0.058	13.7	5.3	0.049	13.9	3.5	1.9	2	0	0	2	2	1	0	Troponin
Nsp1_C	PF05064.13	gi|529078173|ref|YP_008377176.1|	-	0.067	13.0	1.4	0.14	11.9	1.4	1.5	1	0	0	1	1	1	0	Nsp1-like	C-terminal	region
zf-FPG_IleRS	PF06827.14	gi|529078173|ref|YP_008377176.1|	-	0.07	13.0	2.8	7.3	6.6	0.1	3.2	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
BID	PF06393.11	gi|529078173|ref|YP_008377176.1|	-	0.082	12.4	1.6	0.091	12.3	0.0	1.8	2	0	0	2	2	2	0	BH3	interacting	domain	(BID)
TMF_TATA_bd	PF12325.8	gi|529078173|ref|YP_008377176.1|	-	0.085	13.1	8.3	0.24	11.6	8.3	1.7	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
Shugoshin_N	PF07558.11	gi|529078173|ref|YP_008377176.1|	-	0.12	12.2	1.2	0.29	11.0	1.2	1.6	1	0	0	1	1	1	0	Shugoshin	N-terminal	coiled-coil	region
Phage_GP20	PF06810.11	gi|529078173|ref|YP_008377176.1|	-	0.13	12.1	2.4	0.27	11.0	2.4	1.5	1	0	0	1	1	1	0	Phage	minor	structural	protein	GP20
SOUL	PF04832.12	gi|529078173|ref|YP_008377176.1|	-	0.14	12.3	0.1	0.27	11.4	0.1	1.4	1	0	0	1	1	1	0	SOUL	heme-binding	protein
YabA	PF06156.13	gi|529078173|ref|YP_008377176.1|	-	0.19	12.4	3.0	0.17	12.5	1.5	1.8	2	0	0	2	2	1	0	Initiation	control	protein	YabA
DDE_Tnp_IS240	PF13610.6	gi|529078173|ref|YP_008377176.1|	-	0.22	11.8	2.3	0.32	11.2	0.1	2.3	2	1	0	2	2	2	0	DDE	domain
Spc7	PF08317.11	gi|529078173|ref|YP_008377176.1|	-	0.51	9.2	6.7	0.31	9.9	2.6	2.0	2	0	0	2	2	2	0	Spc7	kinetochore	protein
TolA_bind_tri	PF16331.5	gi|529078173|ref|YP_008377176.1|	-	0.57	10.3	10.7	0.4	10.8	7.1	2.3	2	0	0	2	2	2	0	TolA	binding	protein	trimerisation
PKcGMP_CC	PF16808.5	gi|529078173|ref|YP_008377176.1|	-	0.9	9.4	14.7	0.12	12.3	4.8	2.8	1	1	1	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
Zn-ribbon_8	PF09723.10	gi|529078173|ref|YP_008377176.1|	-	1.2	9.3	5.4	19	5.5	0.2	2.7	2	0	0	2	2	2	0	Zinc	ribbon	domain
MPS2	PF17060.5	gi|529078173|ref|YP_008377176.1|	-	1.6	7.9	4.1	3.2	6.9	4.1	1.4	1	0	0	1	1	1	0	Monopolar	spindle	protein	2
APC_N_CC	PF16689.5	gi|529078173|ref|YP_008377176.1|	-	1.7	8.8	6.1	4.5	7.4	6.1	1.7	1	0	0	1	1	1	0	Coiled-coil	N-terminus	of	APC,	dimerisation	domain
DivIC	PF04977.15	gi|529078173|ref|YP_008377176.1|	-	2.3	8.0	9.8	0.29	10.9	4.5	2.2	2	0	0	2	2	2	0	Septum	formation	initiator
DUF4407	PF14362.6	gi|529078173|ref|YP_008377176.1|	-	2.5	7.4	5.1	0.54	9.6	1.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
UPF0242	PF06785.11	gi|529078173|ref|YP_008377176.1|	-	2.8	8.0	6.5	5	7.2	6.5	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
bZIP_2	PF07716.15	gi|529078173|ref|YP_008377176.1|	-	3.2	7.9	11.9	0.74	10.0	7.5	2.4	2	1	0	2	2	1	0	Basic	region	leucine	zipper
Rubredoxin_2	PF18073.1	gi|529078173|ref|YP_008377176.1|	-	3.3	7.5	6.0	4.7	7.0	0.3	2.6	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
TSC22	PF01166.18	gi|529078173|ref|YP_008377176.1|	-	5.2	7.5	8.4	21	5.5	4.9	3.2	2	1	1	3	3	3	0	TSC-22/dip/bun	family
YdjM	PF04307.14	gi|529078174|ref|YP_008377177.1|	-	1.8e-13	50.2	9.4	5.1e-13	48.7	9.4	1.7	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
IncE	PF17627.2	gi|529078174|ref|YP_008377177.1|	-	1.6	8.8	8.8	0.34	10.9	3.3	2.0	2	0	0	2	2	2	0	Inclusion	membrane	protein	E
ADP_ribosyl_GH	PF03747.14	gi|529078175|ref|YP_008377178.1|	-	5.2e-74	249.6	2.5	6e-74	249.4	2.5	1.0	1	0	0	1	1	1	1	ADP-ribosylglycohydrolase
Rick_17kDa_Anti	PF05433.15	gi|529078175|ref|YP_008377178.1|	-	0.015	15.1	3.0	0.015	15.1	3.0	2.9	3	0	0	3	3	3	0	Glycine	zipper	2TM	domain
Gly-zipper_Omp	PF13488.6	gi|529078175|ref|YP_008377178.1|	-	0.033	14.2	1.8	0.094	12.7	0.2	2.2	2	0	0	2	2	2	0	Glycine	zipper
Gly-zipper_YMGG	PF13441.6	gi|529078175|ref|YP_008377178.1|	-	0.083	12.6	7.1	0.19	11.5	2.5	2.5	2	0	0	2	2	2	0	YMGG-like	Gly-zipper
Gly-zipper_OmpA	PF13436.6	gi|529078175|ref|YP_008377178.1|	-	0.33	10.8	6.2	0.45	10.4	1.0	2.5	2	0	0	2	2	2	0	Glycine-zipper	domain
HEPN_LA2681	PF18733.1	gi|529078177|ref|YP_008377180.1|	-	1.6e-69	233.5	0.0	2.5e-69	232.8	0.0	1.2	1	0	0	1	1	1	1	LA2681-like	HEPN
TPR_1	PF00515.28	gi|529078177|ref|YP_008377180.1|	-	1.5e-05	24.6	0.1	0.003	17.3	0.0	3.5	3	0	0	3	3	3	1	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|529078177|ref|YP_008377180.1|	-	0.00074	19.4	0.2	0.42	10.9	0.0	3.8	4	0	0	4	4	4	1	Tetratricopeptide	repeat
HEPN_Cthe2314	PF18730.1	gi|529078177|ref|YP_008377180.1|	-	0.00084	19.4	0.3	0.0034	17.4	0.3	2.0	1	1	0	1	1	1	1	Cthe_2314-like	HEPN
TPR_10	PF13374.6	gi|529078177|ref|YP_008377180.1|	-	0.081	12.8	0.0	0.4	10.6	0.0	2.3	1	0	0	1	1	1	0	Tetratricopeptide	repeat
Fzo_mitofusin	PF04799.13	gi|529078177|ref|YP_008377180.1|	-	0.13	11.8	0.0	0.28	10.7	0.0	1.5	1	0	0	1	1	1	0	fzo-like	conserved	region
ABC1	PF03109.16	gi|529078178|ref|YP_008377181.1|	-	0.21	11.8	0.0	0.22	11.7	0.0	1.0	1	0	0	1	1	1	0	ABC1	family
DUF3575	PF12099.8	gi|529078179|ref|YP_008377182.1|	-	0.044	13.1	0.0	0.091	12.1	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3575)
ABC_membrane_2	PF06472.15	gi|529078182|ref|YP_008377185.1|	-	0.0068	15.8	0.2	0.011	15.2	0.2	1.3	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region	2
Pex24p	PF06398.11	gi|529078182|ref|YP_008377185.1|	-	0.015	14.3	0.0	0.022	13.8	0.0	1.4	1	0	0	1	1	1	0	Integral	peroxisomal	membrane	peroxin
ApoLp-III	PF07464.11	gi|529078182|ref|YP_008377185.1|	-	0.042	13.9	0.3	2.4	8.2	0.1	3.1	3	1	0	3	3	3	0	Apolipophorin-III	precursor	(apoLp-III)
SRR	PF07709.11	gi|529078182|ref|YP_008377185.1|	-	0.12	12.8	1.0	4.8	8.0	0.3	3.1	1	1	1	2	2	2	0	Seven	Residue	Repeat
NPV_P10	PF05531.12	gi|529078182|ref|YP_008377185.1|	-	0.15	12.6	0.2	0.52	10.8	0.2	2.0	1	0	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
Baculo_PEP_C	PF04513.12	gi|529078182|ref|YP_008377185.1|	-	0.16	12.0	2.0	0.25	11.4	0.9	1.8	2	0	0	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Prefoldin	PF02996.17	gi|529078182|ref|YP_008377185.1|	-	1.1	9.2	4.9	20	5.1	0.0	3.7	4	0	0	4	4	4	0	Prefoldin	subunit
NDK	PF00334.19	gi|529078183|ref|YP_008377186.1|	-	0.00086	19.3	0.0	0.0009	19.3	0.0	1.0	1	0	0	1	1	1	1	Nucleoside	diphosphate	kinase
Helicase_C	PF00271.31	gi|529078184|ref|YP_008377187.1|	-	6.8e-18	65.0	0.0	1.9e-17	63.6	0.0	1.8	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.23	gi|529078184|ref|YP_008377187.1|	-	4e-11	42.2	0.0	8.1e-11	41.2	0.0	1.4	1	0	0	1	1	1	1	SNF2	family	N-terminal	domain
ResIII	PF04851.15	gi|529078184|ref|YP_008377187.1|	-	1.9e-07	31.3	0.0	1.7e-06	28.2	0.0	2.5	3	0	0	3	3	3	1	Type	III	restriction	enzyme,	res	subunit
PLDc_2	PF13091.6	gi|529078184|ref|YP_008377187.1|	-	5.4e-05	23.1	0.0	0.00014	21.7	0.0	1.7	1	0	0	1	1	1	1	PLD-like	domain
DUF1664	PF07889.12	gi|529078184|ref|YP_008377187.1|	-	0.021	14.9	4.4	0.29	11.2	0.3	3.5	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF1664)
Phage_sheath_1C	PF17482.2	gi|529078184|ref|YP_008377187.1|	-	0.036	14.0	0.2	4.8	7.2	0.0	2.8	2	0	0	2	2	2	0	Phage	tail	sheath	C-terminal	domain
CMD	PF02627.20	gi|529078184|ref|YP_008377187.1|	-	0.049	13.7	0.1	0.12	12.4	0.1	1.7	1	0	0	1	1	1	0	Carboxymuconolactone	decarboxylase	family
DUF2852	PF11014.8	gi|529078184|ref|YP_008377187.1|	-	0.055	13.6	0.1	0.17	12.0	0.1	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2852)
FlgN	PF05130.12	gi|529078184|ref|YP_008377187.1|	-	0.16	12.5	3.4	0.24	11.9	0.5	2.8	3	0	0	3	3	2	0	FlgN	protein
DUF4618	PF15397.6	gi|529078184|ref|YP_008377187.1|	-	0.59	9.5	4.3	0.38	10.2	1.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4618)
CENP-Q	PF13094.6	gi|529078184|ref|YP_008377187.1|	-	1.1	9.5	7.0	0.1	12.8	1.5	2.1	2	0	0	2	2	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
LUC7	PF03194.15	gi|529078184|ref|YP_008377187.1|	-	1.1	8.9	3.5	0.44	10.2	0.5	1.8	2	0	0	2	2	2	0	LUC7	N_terminus
DUF883	PF05957.13	gi|529078184|ref|YP_008377187.1|	-	1.4	9.5	13.1	0.91	10.2	0.5	4.2	4	1	0	4	4	3	0	Bacterial	protein	of	unknown	function	(DUF883)
T3SSipB	PF16535.5	gi|529078184|ref|YP_008377187.1|	-	1.8	9.1	6.7	43	4.6	0.0	3.5	3	0	0	3	3	3	0	Type	III	cell	invasion	protein	SipB
FUSC	PF04632.12	gi|529078184|ref|YP_008377187.1|	-	2	6.9	3.4	6.9	5.1	3.4	1.9	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
DivIC	PF04977.15	gi|529078184|ref|YP_008377187.1|	-	4.1	7.3	7.4	1	9.2	0.1	3.4	3	1	0	3	3	3	0	Septum	formation	initiator
Apolipoprotein	PF01442.18	gi|529078184|ref|YP_008377187.1|	-	4.8	7.0	19.4	0.032	14.1	5.5	3.3	3	0	0	3	3	3	0	Apolipoprotein	A1/A4/E	domain
Osmo_CC	PF08946.10	gi|529078184|ref|YP_008377187.1|	-	6.7	7.0	5.9	39	4.6	0.2	4.1	4	0	0	4	4	3	0	Osmosensory	transporter	coiled	coil
HIP1_clath_bdg	PF16515.5	gi|529078184|ref|YP_008377187.1|	-	7.2	7.3	15.4	2.2	8.9	0.4	3.9	3	1	1	4	4	4	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
DUF1156	PF06634.12	gi|529078185|ref|YP_008377188.1|	-	6.6e-06	26.1	0.0	1.5e-05	25.0	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1156)
N6_N4_Mtase	PF01555.18	gi|529078185|ref|YP_008377188.1|	-	6.3e-05	22.8	0.0	0.00014	21.7	0.0	1.6	1	0	0	1	1	1	1	DNA	methylase
zf-RING_7	PF02591.15	gi|529078185|ref|YP_008377188.1|	-	0.37	11.0	1.1	10	6.4	0.2	2.5	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
DUF499	PF04465.12	gi|529078187|ref|YP_008377190.1|	-	1.2e-37	129.3	0.0	1.8e-35	122.1	0.0	2.1	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF499)
Sigma70_ner	PF04546.13	gi|529078187|ref|YP_008377190.1|	-	0.15	12.0	4.6	0.088	12.7	1.6	2.1	2	0	0	2	2	2	0	Sigma-70,	non-essential	region
AAA	PF00004.29	gi|529078187|ref|YP_008377190.1|	-	0.15	12.4	0.0	0.56	10.6	0.0	1.9	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
VAPB_antitox	PF02697.14	gi|529078188|ref|YP_008377191.1|	-	0.0091	16.8	0.6	0.0098	16.7	0.6	1.1	1	0	0	1	1	1	1	Putative	antitoxin
AAA_15	PF13175.6	gi|529078190|ref|YP_008377193.1|	-	6e-13	49.2	0.0	2e-05	24.5	0.1	2.6	2	1	0	2	2	2	2	AAA	ATPase	domain
AAA_21	PF13304.6	gi|529078190|ref|YP_008377193.1|	-	3.2e-12	46.9	4.1	2.3e-05	24.4	0.1	3.4	2	1	1	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|529078190|ref|YP_008377193.1|	-	6.8e-11	42.0	0.0	0.00029	20.3	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|529078190|ref|YP_008377193.1|	-	2.2e-08	34.8	3.7	2.2e-08	34.8	3.7	5.0	3	1	0	4	4	4	1	AAA	domain
ABC_tran	PF00005.27	gi|529078190|ref|YP_008377193.1|	-	1.3e-06	29.0	0.7	0.061	13.8	0.2	3.7	2	2	0	2	2	2	2	ABC	transporter
AAA_29	PF13555.6	gi|529078190|ref|YP_008377193.1|	-	8.7e-06	25.4	0.0	2e-05	24.2	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF4456	PF14644.6	gi|529078190|ref|YP_008377193.1|	-	0.006	16.3	1.5	1.9	8.1	0.0	3.6	4	0	0	4	4	4	1	Domain	of	unknown	function	(DUF4456)
SbcCD_C	PF13558.6	gi|529078190|ref|YP_008377193.1|	-	0.019	15.2	0.0	0.048	13.9	0.0	1.7	1	0	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_22	PF13401.6	gi|529078190|ref|YP_008377193.1|	-	0.029	14.7	0.5	3.8	7.8	0.0	3.5	3	0	0	3	3	3	0	AAA	domain
AAA_30	PF13604.6	gi|529078190|ref|YP_008377193.1|	-	0.12	12.1	0.1	11	5.7	0.0	2.6	2	0	0	2	2	2	0	AAA	domain
DUF5082	PF16888.5	gi|529078190|ref|YP_008377193.1|	-	0.14	12.4	13.8	7.2	6.9	3.8	5.2	4	1	0	4	4	4	0	Domain	of	unknown	function	(DUF5082)
NPV_P10	PF05531.12	gi|529078190|ref|YP_008377193.1|	-	0.19	12.2	10.7	2.7	8.5	0.1	5.0	3	1	1	4	4	4	0	Nucleopolyhedrovirus	P10	protein
ABC_tran_CTD	PF16326.5	gi|529078190|ref|YP_008377193.1|	-	0.2	11.9	22.1	0.71	10.2	0.0	5.8	5	1	1	6	6	6	0	ABC	transporter	C-terminal	domain
AAA_27	PF13514.6	gi|529078190|ref|YP_008377193.1|	-	0.23	11.0	0.0	0.23	11.0	0.0	2.6	3	0	0	3	3	3	0	AAA	domain
AAA_11	PF13086.6	gi|529078190|ref|YP_008377193.1|	-	5.7	6.6	11.3	28	4.4	4.5	3.8	2	1	0	2	2	2	0	AAA	domain
APG6_N	PF17675.1	gi|529078190|ref|YP_008377193.1|	-	8.2	7.0	33.9	1.6	9.2	4.9	4.7	4	0	0	4	4	4	0	Apg6	coiled-coil	region
Dehydratase_MU	PF02288.15	gi|529078192|ref|YP_008377195.1|	-	0.12	12.3	0.0	0.17	11.8	0.0	1.2	1	0	0	1	1	1	0	Dehydratase	medium	subunit
PDDEXK_1	PF12705.7	gi|529078193|ref|YP_008377196.1|	-	7.7e-32	111.2	0.0	7.7e-31	107.9	0.0	2.5	2	1	0	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
Exonuc_V_gamma	PF04257.14	gi|529078193|ref|YP_008377196.1|	-	1.9e-08	33.0	0.0	0.00016	20.1	0.0	2.2	2	0	0	2	2	2	2	Exodeoxyribonuclease	V,	gamma	subunit
UvrD-helicase	PF00580.21	gi|529078194|ref|YP_008377197.1|	-	2e-60	205.0	0.0	5.3e-60	203.6	0.0	1.7	1	1	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
AAA_19	PF13245.6	gi|529078194|ref|YP_008377197.1|	-	3e-29	102.2	0.0	3.7e-28	98.7	0.0	2.5	1	1	0	1	1	1	1	AAA	domain
UvrD_C	PF13361.6	gi|529078194|ref|YP_008377197.1|	-	4.1e-23	82.3	0.0	2.7e-21	76.4	0.0	2.3	1	1	0	1	1	1	1	UvrD-like	helicase	C-terminal	domain
PDDEXK_1	PF12705.7	gi|529078194|ref|YP_008377197.1|	-	1.4e-12	48.1	1.6	8.4e-12	45.5	0.0	2.8	2	0	0	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
UvrD_C_2	PF13538.6	gi|529078194|ref|YP_008377197.1|	-	1.6e-10	40.6	0.3	0.0007	19.4	0.0	2.9	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_30	PF13604.6	gi|529078194|ref|YP_008377197.1|	-	1.4e-09	37.9	0.5	1.7e-05	24.6	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
Viral_helicase1	PF01443.18	gi|529078194|ref|YP_008377197.1|	-	0.00014	21.7	0.3	14	5.3	0.0	4.3	4	0	0	4	4	4	1	Viral	(Superfamily	1)	RNA	helicase
AAA_16	PF13191.6	gi|529078194|ref|YP_008377197.1|	-	0.0012	19.2	7.7	0.64	10.4	0.4	4.6	4	1	0	4	4	4	2	AAA	ATPase	domain
AAA_22	PF13401.6	gi|529078194|ref|YP_008377197.1|	-	0.0045	17.3	0.1	4.2	7.7	0.0	3.3	3	0	0	3	3	3	1	AAA	domain
DUF2800	PF10926.8	gi|529078194|ref|YP_008377197.1|	-	0.052	12.8	0.0	0.14	11.4	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2800)
TrmB	PF01978.19	gi|529078195|ref|YP_008377198.1|	-	0.00012	21.9	0.1	0.00023	21.0	0.1	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|529078195|ref|YP_008377198.1|	-	0.00018	21.5	0.8	0.00042	20.3	0.1	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|529078195|ref|YP_008377198.1|	-	0.00036	20.4	0.1	0.00075	19.3	0.1	1.5	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|529078195|ref|YP_008377198.1|	-	0.00098	19.6	0.1	0.002	18.6	0.1	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
RP-C	PF03428.13	gi|529078195|ref|YP_008377198.1|	-	0.0032	17.2	0.3	0.0073	16.0	0.3	1.7	1	1	0	1	1	1	1	Replication	protein	C	N-terminal	domain
HTH_IclR	PF09339.10	gi|529078195|ref|YP_008377198.1|	-	0.0041	16.9	1.6	0.0053	16.5	0.3	1.9	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|529078195|ref|YP_008377198.1|	-	0.0053	17.1	0.0	0.0088	16.4	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
LexA_DNA_bind	PF01726.16	gi|529078195|ref|YP_008377198.1|	-	0.014	15.2	0.0	0.051	13.4	0.0	1.8	2	0	0	2	2	2	0	LexA	DNA	binding	domain
HTH_36	PF13730.6	gi|529078195|ref|YP_008377198.1|	-	0.031	14.2	0.0	0.069	13.1	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|529078195|ref|YP_008377198.1|	-	0.034	13.7	0.0	0.082	12.5	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|529078195|ref|YP_008377198.1|	-	0.042	13.8	0.0	0.074	13.0	0.0	1.3	1	0	0	1	1	1	0	MarR	family
Ribosomal_S25	PF03297.15	gi|529078195|ref|YP_008377198.1|	-	0.044	14.0	0.0	0.074	13.3	0.0	1.4	1	0	0	1	1	1	0	S25	ribosomal	protein
DUF848	PF05852.11	gi|529078195|ref|YP_008377198.1|	-	0.054	13.6	0.3	0.089	12.9	0.3	1.4	1	1	0	1	1	1	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
Biotin_carb_C	PF02785.19	gi|529078195|ref|YP_008377198.1|	-	0.11	12.6	0.9	11	6.1	0.0	2.5	2	1	0	3	3	3	0	Biotin	carboxylase	C-terminal	domain
TrmB	PF01978.19	gi|529078197|ref|YP_008377200.1|	-	0.039	13.8	0.0	0.088	12.7	0.0	1.6	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
SMG1	PF15785.5	gi|529078197|ref|YP_008377200.1|	-	0.098	11.0	0.0	0.11	10.9	0.0	1.1	1	0	0	1	1	1	0	Serine/threonine-protein	kinase	smg-1
PDDEXK_1	PF12705.7	gi|529078198|ref|YP_008377201.1|	-	5.7e-08	33.0	0.0	7.8e-08	32.5	0.0	1.3	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
Cas_Cas4	PF01930.17	gi|529078198|ref|YP_008377201.1|	-	1.9e-05	24.9	0.0	4.2e-05	23.7	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
Vps36-NZF-N	PF16988.5	gi|529078198|ref|YP_008377201.1|	-	0.0038	16.6	0.4	0.0038	16.6	0.4	2.0	2	0	0	2	2	2	1	Vacuolar	protein	sorting	36	NZF-N	zinc-finger	domain
DUF2752	PF10825.8	gi|529078198|ref|YP_008377201.1|	-	0.02	14.9	0.1	0.037	14.1	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2752)
zf-Sec23_Sec24	PF04810.15	gi|529078198|ref|YP_008377201.1|	-	0.53	10.4	5.4	5	7.3	0.0	2.7	3	0	0	3	3	3	0	Sec23/Sec24	zinc	finger
A2L_zn_ribbon	PF08792.10	gi|529078198|ref|YP_008377201.1|	-	0.66	9.8	3.8	9.8	6.0	0.0	3.2	3	0	0	3	3	3	0	A2L	zinc	ribbon	domain
Rubredoxin	PF00301.20	gi|529078198|ref|YP_008377201.1|	-	0.7	10.0	8.9	1.3	9.1	0.3	3.5	3	0	0	3	3	3	0	Rubredoxin
Phage_int_SAM_1	PF02899.17	gi|529078200|ref|YP_008377203.1|	-	1.4e-10	41.3	0.5	3.8e-10	39.9	0.5	1.8	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_integrase	PF00589.22	gi|529078200|ref|YP_008377203.1|	-	1.2e-07	31.7	0.0	3.4e-07	30.2	0.0	1.8	2	1	1	3	3	3	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.6	gi|529078200|ref|YP_008377203.1|	-	3.7e-05	24.1	0.2	0.0001	22.7	0.2	1.8	1	1	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_5	PF13102.6	gi|529078200|ref|YP_008377203.1|	-	0.006	16.9	0.0	0.011	16.0	0.0	1.4	1	0	0	1	1	1	1	Phage	integrase	SAM-like	domain
Phage_integrase	PF00589.22	gi|529078201|ref|YP_008377204.1|	-	2.6e-11	43.6	0.0	1.3e-10	41.4	0.0	1.9	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|529078201|ref|YP_008377204.1|	-	1.4e-09	38.2	0.1	3.5e-09	36.8	0.1	1.6	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|529078201|ref|YP_008377204.1|	-	0.00087	19.7	0.0	0.0022	18.4	0.0	1.7	1	1	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
HTH_20	PF12840.7	gi|529078202|ref|YP_008377205.1|	-	2e-07	30.9	0.4	1.1e-06	28.5	0.1	2.0	1	1	1	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|529078202|ref|YP_008377205.1|	-	9.8e-05	22.2	0.4	0.00019	21.2	0.0	1.6	2	0	0	2	2	2	1	MarR	family
HTH_15	PF12324.8	gi|529078202|ref|YP_008377205.1|	-	0.0003	20.7	2.3	0.0031	17.4	0.1	2.2	1	1	1	2	2	2	1	Helix-turn-helix	domain	of	alkylmercury	lyase
HTH_28	PF13518.6	gi|529078202|ref|YP_008377205.1|	-	0.0021	18.2	0.0	0.0041	17.2	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|529078202|ref|YP_008377205.1|	-	0.0021	17.9	0.0	0.0034	17.2	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_29	PF13551.6	gi|529078202|ref|YP_008377205.1|	-	0.0026	17.8	0.0	0.0045	17.0	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
HU-CCDC81_bac_2	PF18175.1	gi|529078202|ref|YP_008377205.1|	-	0.0032	17.3	0.3	0.071	13.0	0.0	2.2	2	0	0	2	2	2	1	CCDC81-like	prokaryotic	HU	domain	2
HTH_24	PF13412.6	gi|529078202|ref|YP_008377205.1|	-	0.0051	16.4	1.6	0.0063	16.1	0.1	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_1	PF00126.27	gi|529078202|ref|YP_008377205.1|	-	0.015	15.2	0.0	0.028	14.4	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_27	PF13463.6	gi|529078202|ref|YP_008377205.1|	-	0.024	15.1	0.0	0.038	14.5	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.10	gi|529078202|ref|YP_008377205.1|	-	0.033	14.0	0.0	0.061	13.1	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Bac_DNA_binding	PF00216.21	gi|529078202|ref|YP_008377205.1|	-	0.041	14.1	0.3	0.11	12.7	0.1	1.7	2	0	0	2	2	2	0	Bacterial	DNA-binding	protein
ZapA	PF05164.13	gi|529078202|ref|YP_008377205.1|	-	0.044	14.2	0.1	0.1	13.0	0.1	1.5	1	0	0	1	1	1	0	Cell	division	protein	ZapA
DUF2250	PF10007.9	gi|529078202|ref|YP_008377205.1|	-	0.096	12.8	0.0	0.15	12.2	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
DUF4268	PF14088.6	gi|529078203|ref|YP_008377206.1|	-	3.9e-15	56.0	0.0	6.6e-15	55.2	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4268)
NucS	PF01939.16	gi|529078203|ref|YP_008377206.1|	-	0.011	15.0	0.0	0.021	14.2	0.0	1.4	1	0	0	1	1	1	0	Endonuclease	NucS
Pilin_N	PF07790.11	gi|529078205|ref|YP_008377208.1|	-	1.4e-20	74.0	0.7	2.2e-20	73.4	0.7	1.3	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
Pilin_N	PF07790.11	gi|529078206|ref|YP_008377209.1|	-	3e-23	82.5	4.9	8e-23	81.2	1.4	2.1	2	0	0	2	2	2	1	Archaeal	Type	IV	pilin,	N-terminal
Pro_Al_protease	PF02983.14	gi|529078206|ref|YP_008377209.1|	-	0.013	15.6	0.0	0.025	14.6	0.0	1.5	1	0	0	1	1	1	0	Alpha-lytic	protease	prodomain
HigB-like_toxin	PF05015.13	gi|529078207|ref|YP_008377210.1|	-	0.055	13.9	0.1	0.055	13.9	0.1	1.2	1	0	0	1	1	1	0	RelE-like	toxin	of	type	II	toxin-antitoxin	system	HigB
TrmB	PF01978.19	gi|529078208|ref|YP_008377211.1|	-	3.4e-17	62.1	0.0	6e-17	61.3	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Regulator_TrmB	PF11495.8	gi|529078208|ref|YP_008377211.1|	-	5.6e-05	22.4	0.1	8.6e-05	21.8	0.1	1.4	1	1	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|529078208|ref|YP_008377211.1|	-	0.018	15.4	0.0	0.031	14.6	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_27	PF13463.6	gi|529078208|ref|YP_008377211.1|	-	0.061	13.8	0.0	0.19	12.2	0.0	1.9	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.10	gi|529078208|ref|YP_008377211.1|	-	0.061	13.1	0.0	0.14	12.0	0.0	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Autoind_synth	PF00765.17	gi|529078208|ref|YP_008377211.1|	-	0.18	11.3	0.0	0.27	10.7	0.0	1.3	1	0	0	1	1	1	0	Autoinducer	synthase
TFIIB	PF00382.19	gi|529078209|ref|YP_008377212.1|	-	2.7e-34	117.0	0.0	3.9e-17	62.1	0.0	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|529078209|ref|YP_008377212.1|	-	2.7e-15	55.6	2.8	4.8e-15	54.8	2.8	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.16	gi|529078209|ref|YP_008377212.1|	-	0.0014	18.1	0.2	0.025	14.1	0.1	2.7	2	0	0	2	2	2	1	Sigma-70,	region	4
OrfB_Zn_ribbon	PF07282.11	gi|529078209|ref|YP_008377212.1|	-	0.0064	16.4	1.0	0.014	15.3	1.0	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
UMPH-1	PF05822.12	gi|529078209|ref|YP_008377212.1|	-	0.027	14.0	0.0	0.041	13.4	0.0	1.2	1	0	0	1	1	1	0	Pyrimidine	5'-nucleotidase	(UMPH-1)
HTH_11	PF08279.12	gi|529078209|ref|YP_008377212.1|	-	0.038	13.9	0.2	0.085	12.8	0.2	1.5	1	0	0	1	1	1	0	HTH	domain
DZR	PF12773.7	gi|529078209|ref|YP_008377212.1|	-	0.049	13.7	0.5	0.095	12.7	0.5	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
HTH_AsnC-type	PF13404.6	gi|529078209|ref|YP_008377212.1|	-	0.068	13.0	0.2	0.28	11.0	0.0	2.2	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
zf-ISL3	PF14690.6	gi|529078209|ref|YP_008377212.1|	-	0.087	13.5	1.5	1	10.1	1.2	2.4	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-RING_7	PF02591.15	gi|529078209|ref|YP_008377212.1|	-	0.15	12.3	3.7	1.5	9.0	0.2	3.0	3	0	0	3	3	3	0	C4-type	zinc	ribbon	domain
Zn_Tnp_IS91	PF14319.6	gi|529078209|ref|YP_008377212.1|	-	0.17	12.0	0.4	0.38	10.8	0.4	1.5	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
zf-ribbon_3	PF13248.6	gi|529078209|ref|YP_008377212.1|	-	0.24	10.9	2.9	4	7.0	2.9	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|529078209|ref|YP_008377212.1|	-	0.25	11.5	1.7	2.1	8.5	0.2	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
Nudix_N_2	PF14803.6	gi|529078209|ref|YP_008377212.1|	-	0.83	9.6	4.0	3.6	7.6	4.0	2.1	1	1	0	1	1	1	0	Nudix	N-terminal
zf-RRN7	PF11781.8	gi|529078209|ref|YP_008377212.1|	-	2.2	8.1	6.4	7.8	6.3	6.4	1.9	1	1	0	1	1	1	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Beta-Casp	PF10996.8	gi|529078210|ref|YP_008377213.1|	-	1.5e-12	47.8	0.0	3.1e-12	46.7	0.0	1.5	1	0	0	1	1	1	1	Beta-Casp	domain
RMMBL	PF07521.12	gi|529078210|ref|YP_008377213.1|	-	1.3e-11	44.3	0.1	3.5e-11	42.9	0.0	1.8	2	0	0	2	2	2	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B	PF00753.27	gi|529078210|ref|YP_008377213.1|	-	1.7e-08	34.7	5.6	4.9e-08	33.2	5.5	1.7	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|529078210|ref|YP_008377213.1|	-	2.3e-06	27.3	1.3	6.9e-06	25.7	0.8	1.9	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|529078210|ref|YP_008377213.1|	-	0.0012	18.3	0.0	0.002	17.6	0.0	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Rhodanese	PF00581.20	gi|529078210|ref|YP_008377213.1|	-	0.032	14.7	0.0	0.065	13.8	0.0	1.5	1	0	0	1	1	1	0	Rhodanese-like	domain
DNA_pol_B	PF00136.21	gi|529078211|ref|YP_008377214.1|	-	1.3e-20	73.6	0.0	5.5e-20	71.5	0.0	1.8	1	1	0	1	1	1	1	DNA	polymerase	family	B
HSBP1	PF06825.12	gi|529078212|ref|YP_008377215.1|	-	0.00037	20.3	1.9	0.058	13.3	0.3	2.4	1	1	1	2	2	2	2	Heat	shock	factor	binding	protein	1
DivIC	PF04977.15	gi|529078212|ref|YP_008377215.1|	-	0.00087	19.0	0.2	0.0012	18.5	0.2	1.2	1	0	0	1	1	1	1	Septum	formation	initiator
TolA_bind_tri	PF16331.5	gi|529078212|ref|YP_008377215.1|	-	0.0021	18.1	0.3	0.0035	17.4	0.3	1.4	1	0	0	1	1	1	1	TolA	binding	protein	trimerisation
SlyX	PF04102.12	gi|529078212|ref|YP_008377215.1|	-	0.013	16.1	3.0	0.014	16.0	1.5	1.8	2	1	0	2	2	2	0	SlyX
DUF4407	PF14362.6	gi|529078212|ref|YP_008377215.1|	-	0.036	13.4	0.2	0.036	13.4	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
FlaC_arch	PF05377.11	gi|529078212|ref|YP_008377215.1|	-	0.086	13.2	0.1	0.22	11.9	0.1	1.7	1	1	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
DUF4140	PF13600.6	gi|529078212|ref|YP_008377215.1|	-	0.1	13.1	1.4	0.13	12.7	1.4	1.4	1	1	0	1	1	1	0	N-terminal	domain	of	unknown	function	(DUF4140)
ABC_tran_CTD	PF16326.5	gi|529078212|ref|YP_008377215.1|	-	0.1	12.9	6.3	0.13	12.5	4.4	2.1	2	1	0	2	2	2	0	ABC	transporter	C-terminal	domain
DUF16	PF01519.16	gi|529078212|ref|YP_008377215.1|	-	0.1	13.1	0.0	0.16	12.5	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF16
Med21	PF11221.8	gi|529078212|ref|YP_008377215.1|	-	0.11	12.7	0.8	0.18	12.1	0.8	1.3	1	0	0	1	1	1	0	Subunit	21	of	Mediator	complex
SHE3	PF17078.5	gi|529078212|ref|YP_008377215.1|	-	0.12	12.1	0.0	0.13	11.9	0.0	1.1	1	0	0	1	1	1	0	SWI5-dependent	HO	expression	protein	3
Dynactin_p22	PF07426.11	gi|529078212|ref|YP_008377215.1|	-	0.12	12.3	0.2	0.16	11.8	0.2	1.2	1	0	0	1	1	1	0	Dynactin	subunit	p22
XhlA	PF10779.9	gi|529078212|ref|YP_008377215.1|	-	0.14	12.4	0.9	0.28	11.4	0.9	1.5	1	0	0	1	1	1	0	Haemolysin	XhlA
MRF_C1	PF13887.6	gi|529078212|ref|YP_008377215.1|	-	0.34	10.1	2.3	12	5.1	1.0	2.3	2	0	0	2	2	2	0	Myelin	gene	regulatory	factor	-C-terminal	domain	1
HalX	PF08663.10	gi|529078212|ref|YP_008377215.1|	-	0.38	11.1	9.8	1.6	9.1	7.3	2.6	2	1	0	2	2	2	0	HalX	domain
Rad51	PF08423.11	gi|529078213|ref|YP_008377216.1|	-	0.00056	19.2	0.0	0.0011	18.3	0.0	1.4	1	1	0	1	1	1	1	Rad51
AAA_22	PF13401.6	gi|529078215|ref|YP_008377218.1|	-	5.6e-10	39.6	0.1	5.8e-09	36.3	0.0	2.3	1	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|529078215|ref|YP_008377218.1|	-	6.8e-10	39.6	6.1	2.1e-09	38.0	0.4	3.1	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|529078215|ref|YP_008377218.1|	-	7.4e-06	26.4	0.0	4.2e-05	24.0	0.0	2.3	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NTPase_1	PF03266.15	gi|529078215|ref|YP_008377218.1|	-	0.00043	20.2	0.2	0.0077	16.1	0.1	2.5	2	1	0	2	2	2	1	NTPase
AAA_assoc_2	PF16193.5	gi|529078215|ref|YP_008377218.1|	-	0.00056	20.2	2.5	0.00061	20.1	0.6	2.0	2	0	0	2	2	2	1	AAA	C-terminal	domain
ABC_tran	PF00005.27	gi|529078215|ref|YP_008377218.1|	-	0.00068	20.2	0.0	0.002	18.6	0.0	1.9	2	0	0	2	2	2	1	ABC	transporter
AAA_18	PF13238.6	gi|529078215|ref|YP_008377218.1|	-	0.0011	19.5	0.7	0.0059	17.2	0.2	2.6	1	1	0	2	2	2	1	AAA	domain
TsaE	PF02367.17	gi|529078215|ref|YP_008377218.1|	-	0.0017	18.4	0.7	0.028	14.4	0.0	2.6	2	1	1	3	3	3	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
PRK	PF00485.18	gi|529078215|ref|YP_008377218.1|	-	0.0028	17.4	0.0	0.0091	15.8	0.0	1.8	2	0	0	2	2	2	1	Phosphoribulokinase	/	Uridine	kinase	family
DUF815	PF05673.13	gi|529078215|ref|YP_008377218.1|	-	0.0034	16.6	0.0	0.0059	15.8	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
TniB	PF05621.11	gi|529078215|ref|YP_008377218.1|	-	0.0046	16.4	0.0	0.0088	15.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	TniB	protein
Zeta_toxin	PF06414.12	gi|529078215|ref|YP_008377218.1|	-	0.0098	15.2	1.3	0.038	13.3	0.1	2.5	2	2	2	4	4	4	1	Zeta	toxin
AAA_29	PF13555.6	gi|529078215|ref|YP_008377218.1|	-	0.011	15.5	0.6	0.034	13.9	0.3	2.0	1	1	1	2	2	2	0	P-loop	containing	region	of	AAA	domain
tRNA_lig_kinase	PF08303.11	gi|529078215|ref|YP_008377218.1|	-	0.014	15.5	0.4	0.038	14.1	0.0	1.8	2	0	0	2	2	1	0	tRNA	ligase	kinase	domain
AAA_33	PF13671.6	gi|529078215|ref|YP_008377218.1|	-	0.015	15.5	1.5	0.075	13.2	0.1	2.8	3	1	0	3	3	3	0	AAA	domain
ATPase_2	PF01637.18	gi|529078215|ref|YP_008377218.1|	-	0.026	14.4	0.0	0.12	12.3	0.0	2.2	2	1	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
Penicillinase_R	PF03965.16	gi|529078215|ref|YP_008377218.1|	-	0.028	14.8	0.0	0.054	13.9	0.0	1.5	1	0	0	1	1	1	0	Penicillinase	repressor
AAA_7	PF12775.7	gi|529078215|ref|YP_008377218.1|	-	0.041	13.4	0.0	0.077	12.5	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
APS_kinase	PF01583.20	gi|529078215|ref|YP_008377218.1|	-	0.049	13.5	0.0	0.092	12.6	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
AAA_19	PF13245.6	gi|529078215|ref|YP_008377218.1|	-	0.053	13.9	0.1	0.26	11.6	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.22	gi|529078215|ref|YP_008377218.1|	-	0.053	12.7	0.0	0.1	11.8	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
AAA_5	PF07728.14	gi|529078215|ref|YP_008377218.1|	-	0.054	13.5	0.9	0.88	9.6	0.1	3.0	2	2	1	3	3	3	0	AAA	domain	(dynein-related	subfamily)
AAA_23	PF13476.6	gi|529078215|ref|YP_008377218.1|	-	0.059	13.9	0.0	0.15	12.6	0.0	1.5	2	0	0	2	2	1	0	AAA	domain
Cytidylate_kin	PF02224.18	gi|529078215|ref|YP_008377218.1|	-	0.06	13.1	0.6	0.41	10.3	0.0	2.3	2	1	0	2	2	2	0	Cytidylate	kinase
Bac_DnaA	PF00308.18	gi|529078215|ref|YP_008377218.1|	-	0.065	13.1	0.0	0.15	11.9	0.0	1.5	2	0	0	2	2	1	0	Bacterial	dnaA	protein
Sigma54_activat	PF00158.26	gi|529078215|ref|YP_008377218.1|	-	0.08	12.6	0.0	0.19	11.4	0.0	1.6	1	0	0	1	1	1	0	Sigma-54	interaction	domain
Cdc6_C	PF09079.11	gi|529078215|ref|YP_008377218.1|	-	0.12	12.4	0.0	0.28	11.2	0.0	1.6	1	0	0	1	1	1	0	CDC6,	C	terminal	winged	helix	domain
HTH_36	PF13730.6	gi|529078215|ref|YP_008377218.1|	-	0.13	12.2	0.1	0.33	11.0	0.1	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
RuvB_N	PF05496.12	gi|529078215|ref|YP_008377218.1|	-	0.14	11.9	0.0	0.26	11.0	0.0	1.5	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
RsgA_GTPase	PF03193.16	gi|529078215|ref|YP_008377218.1|	-	0.16	11.9	0.0	0.34	10.8	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
AAA_24	PF13479.6	gi|529078215|ref|YP_008377218.1|	-	0.2	11.4	0.4	0.33	10.6	0.4	1.6	1	1	0	1	1	1	0	AAA	domain
HTH_20	PF12840.7	gi|529078218|ref|YP_008377221.1|	-	5.1e-05	23.2	0.0	8.7e-05	22.5	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|529078218|ref|YP_008377221.1|	-	0.00022	21.1	0.0	0.00054	19.8	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_24	PF13412.6	gi|529078218|ref|YP_008377221.1|	-	0.00048	19.6	0.1	0.00084	18.9	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|529078218|ref|YP_008377221.1|	-	0.0037	17.1	0.0	0.0051	16.7	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|529078218|ref|YP_008377221.1|	-	0.021	14.6	0.0	0.036	13.9	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|529078218|ref|YP_008377221.1|	-	0.035	14.0	0.0	0.051	13.5	0.0	1.2	1	0	0	1	1	1	0	MarR	family
HTH_27	PF13463.6	gi|529078218|ref|YP_008377221.1|	-	0.05	14.1	0.0	0.076	13.5	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Cdc6_C	PF09079.11	gi|529078218|ref|YP_008377221.1|	-	0.11	12.4	0.0	0.21	11.6	0.0	1.5	1	0	0	1	1	1	0	CDC6,	C	terminal	winged	helix	domain
AAA_15	PF13175.6	gi|529078219|ref|YP_008377222.1|	-	2.5e-27	96.6	1.6	2.2e-26	93.5	1.6	2.2	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_21	PF13304.6	gi|529078219|ref|YP_008377222.1|	-	4.2e-27	95.7	0.3	6.3e-26	91.9	0.3	2.3	1	1	0	1	1	1	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF2813	PF11398.8	gi|529078219|ref|YP_008377222.1|	-	9.7e-13	48.1	0.1	2.8e-06	26.9	0.0	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF2813)
SMC_N	PF02463.19	gi|529078219|ref|YP_008377222.1|	-	0.00024	20.6	4.2	0.0036	16.7	4.2	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|529078219|ref|YP_008377222.1|	-	0.00073	20.1	5.2	0.00093	19.7	1.8	2.6	2	1	0	2	2	2	1	AAA	domain
AAA_29	PF13555.6	gi|529078219|ref|YP_008377222.1|	-	0.0024	17.6	0.0	0.0053	16.5	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_27	PF13514.6	gi|529078219|ref|YP_008377222.1|	-	0.026	14.1	0.0	0.14	11.8	0.0	2.1	3	0	0	3	3	3	0	AAA	domain
MMR_HSR1	PF01926.23	gi|529078219|ref|YP_008377222.1|	-	0.048	13.7	0.0	0.16	12.1	0.0	1.9	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
HATPase_c_3	PF13589.6	gi|529078220|ref|YP_008377223.1|	-	3.7e-23	81.9	0.9	7.2e-23	80.9	0.1	1.9	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.26	gi|529078220|ref|YP_008377223.1|	-	5.5e-06	26.9	0.1	1.6e-05	25.4	0.0	1.8	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
UPF0236	PF06782.11	gi|529078221|ref|YP_008377224.1|	-	2.3e-06	26.5	0.0	0.00018	20.3	0.0	2.2	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|529078221|ref|YP_008377224.1|	-	0.0028	16.6	0.3	2.8	6.7	0.1	2.8	2	2	0	2	2	2	2	Transposase,	Mutator	family
DDE_Tnp_IS66	PF03050.14	gi|529078221|ref|YP_008377224.1|	-	0.0032	17.0	0.1	0.0046	16.5	0.1	1.2	1	0	0	1	1	1	1	Transposase	IS66	family
DNA_methylase	PF00145.17	gi|529078222|ref|YP_008377225.1|	-	6.6e-51	173.6	0.0	6.9e-38	130.8	0.0	2.1	2	0	0	2	2	2	2	C-5	cytosine-specific	DNA	methylase
Methyltransf_15	PF09445.10	gi|529078222|ref|YP_008377225.1|	-	2.8e-05	23.8	0.1	4.8e-05	23.0	0.1	1.3	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
MTS	PF05175.14	gi|529078222|ref|YP_008377225.1|	-	0.0043	16.6	0.1	0.0074	15.8	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_25	PF13649.6	gi|529078222|ref|YP_008377225.1|	-	0.021	15.5	0.1	0.054	14.2	0.1	1.7	1	0	0	1	1	1	0	Methyltransferase	domain
TehB	PF03848.14	gi|529078222|ref|YP_008377225.1|	-	0.049	13.0	0.1	0.12	11.8	0.0	1.6	2	0	0	2	2	2	0	Tellurite	resistance	protein	TehB
PrmA	PF06325.13	gi|529078222|ref|YP_008377225.1|	-	0.095	12.1	0.1	0.13	11.6	0.1	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
AAA_3	PF07726.11	gi|529078223|ref|YP_008377226.1|	-	6.8e-64	213.6	0.1	1.1e-63	212.9	0.1	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|529078223|ref|YP_008377226.1|	-	2.5e-21	75.3	1.6	4.6e-21	74.4	1.6	1.5	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|529078223|ref|YP_008377226.1|	-	5e-14	52.5	0.0	1.4e-13	51.1	0.0	1.7	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|529078223|ref|YP_008377226.1|	-	1.9e-05	25.1	0.0	3.2e-05	24.4	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|529078223|ref|YP_008377226.1|	-	0.00011	22.0	0.0	0.0011	18.8	0.0	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
Mg_chelatase	PF01078.21	gi|529078223|ref|YP_008377226.1|	-	0.00014	21.3	0.2	0.44	9.9	0.1	2.6	2	1	0	3	3	3	2	Magnesium	chelatase,	subunit	ChlI
MCM	PF00493.23	gi|529078223|ref|YP_008377226.1|	-	0.0002	20.5	0.0	0.00028	20.1	0.0	1.3	1	0	0	1	1	1	1	MCM	P-loop	domain
RuvB_N	PF05496.12	gi|529078223|ref|YP_008377226.1|	-	0.11	12.2	0.0	1.3	8.8	0.0	2.1	1	1	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
DUF4129	PF13559.6	gi|529078224|ref|YP_008377227.1|	-	2.1e-05	24.7	7.1	8.3e-05	22.8	7.1	2.1	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4129)
SLATT_2	PF18183.1	gi|529078224|ref|YP_008377227.1|	-	0.027	14.3	0.2	0.059	13.2	0.2	1.5	1	0	0	1	1	1	0	SMODS	and	SLOG-associating	2TM	effector	domain	2
PelG	PF16933.5	gi|529078224|ref|YP_008377227.1|	-	0.2	10.5	0.4	0.34	9.7	0.4	1.2	1	0	0	1	1	1	0	Putative	exopolysaccharide	Exporter	(EPS-E)
DUF58	PF01882.18	gi|529078225|ref|YP_008377228.1|	-	7.7e-16	58.2	0.3	1.8e-14	53.7	0.1	2.6	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF58
DUF11	PF01345.18	gi|529078225|ref|YP_008377228.1|	-	3.2e-13	49.8	0.7	8.5e-13	48.4	0.7	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF11
NPCBM_assoc	PF10633.9	gi|529078225|ref|YP_008377228.1|	-	1.1e-09	38.4	2.2	6.6e-09	35.9	0.2	2.6	2	0	0	2	2	2	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
CARDB	PF07705.11	gi|529078225|ref|YP_008377228.1|	-	0.00015	21.9	0.0	0.00035	20.8	0.0	1.5	1	0	0	1	1	1	1	CARDB
DUF533	PF04391.12	gi|529078225|ref|YP_008377228.1|	-	0.061	12.9	0.1	0.13	11.8	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF533)
MARVEL	PF01284.23	gi|529078226|ref|YP_008377229.1|	-	1.8	8.6	11.0	4.9	7.2	11.0	1.9	1	1	0	1	1	1	0	Membrane-associating	domain
DUF3379	PF11859.8	gi|529078226|ref|YP_008377229.1|	-	5.8	6.2	6.3	0.96	8.7	0.9	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3379)
DUF805	PF05656.14	gi|529078226|ref|YP_008377229.1|	-	8.3	6.9	7.8	0.71	10.3	1.2	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF805)
DUF502	PF04367.13	gi|529078227|ref|YP_008377230.1|	-	2.9e-28	97.8	1.5	5.5e-28	97.0	0.0	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF502)
RGP	PF03214.13	gi|529078228|ref|YP_008377231.1|	-	6.2e-14	51.9	0.0	7.5e-14	51.6	0.0	1.2	1	0	0	1	1	1	1	Reversibly	glycosylated	polypeptide
SBP_bac_6	PF13343.6	gi|529078229|ref|YP_008377232.1|	-	1.2e-14	54.4	0.1	1.5e-14	54.0	0.1	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|529078229|ref|YP_008377232.1|	-	0.0019	18.2	3.8	0.012	15.6	3.8	2.0	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|529078229|ref|YP_008377232.1|	-	0.19	11.6	10.0	0.11	12.3	7.2	2.2	1	1	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.22	gi|529078230|ref|YP_008377233.1|	-	7.6e-29	100.8	34.7	8.9e-16	58.2	14.2	3.4	3	1	1	4	4	4	2	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|529078231|ref|YP_008377234.1|	-	5.5e-34	117.6	0.0	8.5e-34	117.0	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|529078231|ref|YP_008377234.1|	-	3.1e-10	40.0	0.4	1.3e-09	38.0	0.2	2.3	2	0	0	2	2	2	1	TOBE	domain
AAA_21	PF13304.6	gi|529078231|ref|YP_008377234.1|	-	8.9e-08	32.3	0.3	0.00045	20.1	0.0	2.3	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Rad17	PF03215.15	gi|529078231|ref|YP_008377234.1|	-	0.00028	20.9	0.1	0.00043	20.3	0.1	1.2	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_22	PF13401.6	gi|529078231|ref|YP_008377234.1|	-	0.0004	20.7	0.1	0.0024	18.1	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|529078231|ref|YP_008377234.1|	-	0.0021	18.5	0.5	0.0057	17.1	0.2	1.9	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|529078231|ref|YP_008377234.1|	-	0.0022	18.4	0.0	0.016	15.7	0.0	2.2	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_30	PF13604.6	gi|529078231|ref|YP_008377234.1|	-	0.021	14.6	0.1	0.12	12.1	0.0	2.0	1	1	1	2	2	2	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|529078231|ref|YP_008377234.1|	-	0.023	14.6	0.0	0.049	13.5	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
AAA_33	PF13671.6	gi|529078231|ref|YP_008377234.1|	-	0.036	14.2	0.1	0.2	11.8	0.1	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|529078231|ref|YP_008377234.1|	-	0.043	14.1	0.1	0.12	12.7	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
SbcCD_C	PF13558.6	gi|529078231|ref|YP_008377234.1|	-	0.17	12.1	0.1	0.91	9.8	0.1	2.1	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
PMT_2	PF13231.6	gi|529078232|ref|YP_008377235.1|	-	2.4e-12	47.3	7.3	2.4e-12	47.3	7.3	3.5	4	0	0	4	4	4	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
Cadherin-like	PF12733.7	gi|529078232|ref|YP_008377235.1|	-	0.037	14.6	0.2	0.085	13.4	0.2	1.5	1	0	0	1	1	1	0	Cadherin-like	beta	sandwich	domain
Gluconate_2-dh3	PF13618.6	gi|529078233|ref|YP_008377236.1|	-	1.1e-11	45.2	0.0	1.5e-11	44.7	0.0	1.2	1	0	0	1	1	1	1	Gluconate	2-dehydrogenase	subunit	3
GMC_oxred_C	PF05199.13	gi|529078234|ref|YP_008377237.1|	-	1.2e-24	87.5	0.4	1.2e-23	84.2	0.4	2.3	1	1	0	1	1	1	1	GMC	oxidoreductase
GMC_oxred_N	PF00732.19	gi|529078234|ref|YP_008377237.1|	-	2.9e-15	56.4	0.0	4.8e-15	55.7	0.0	1.3	1	0	0	1	1	1	1	GMC	oxidoreductase
DAO	PF01266.24	gi|529078234|ref|YP_008377237.1|	-	2e-10	40.8	2.6	0.00021	21.0	0.3	3.2	3	0	0	3	3	3	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|529078234|ref|YP_008377237.1|	-	2.4e-08	33.5	1.6	0.0035	16.5	0.3	2.4	2	0	0	2	2	2	2	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|529078234|ref|YP_008377237.1|	-	6.3e-07	29.0	1.8	3.9e-05	23.0	0.1	2.2	2	0	0	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|529078234|ref|YP_008377237.1|	-	4.5e-06	26.8	0.1	1.5e-05	25.1	0.1	1.9	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Lycopene_cycl	PF05834.12	gi|529078234|ref|YP_008377237.1|	-	2.3e-05	23.6	0.3	3.4e-05	23.1	0.3	1.2	1	0	0	1	1	1	1	Lycopene	cyclase	protein
Pyr_redox_2	PF07992.14	gi|529078234|ref|YP_008377237.1|	-	0.00016	21.0	0.0	0.00065	19.0	0.0	1.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|529078234|ref|YP_008377237.1|	-	0.00025	19.9	0.3	0.0014	17.4	0.2	1.9	2	0	0	2	2	2	1	HI0933-like	protein
Fer4_7	PF12838.7	gi|529078234|ref|YP_008377237.1|	-	0.0058	17.2	1.2	0.012	16.2	1.2	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
ApbA	PF02558.16	gi|529078234|ref|YP_008377237.1|	-	0.0073	16.0	0.1	0.014	15.0	0.1	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
2-Hacid_dh_C	PF02826.19	gi|529078234|ref|YP_008377237.1|	-	0.025	13.9	0.0	0.043	13.2	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Pyr_redox_3	PF13738.6	gi|529078234|ref|YP_008377237.1|	-	0.026	13.8	0.4	0.049	12.9	0.4	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|529078234|ref|YP_008377237.1|	-	0.029	13.6	0.0	0.053	12.8	0.0	1.3	1	0	0	1	1	1	0	Thi4	family
3HCDH_N	PF02737.18	gi|529078234|ref|YP_008377237.1|	-	0.034	14.0	0.0	0.063	13.2	0.0	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Fer4_10	PF13237.6	gi|529078234|ref|YP_008377237.1|	-	0.097	12.8	0.1	0.2	11.8	0.1	1.5	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Pyr_redox	PF00070.27	gi|529078234|ref|YP_008377237.1|	-	0.11	13.1	0.2	0.33	11.6	0.1	1.9	2	0	0	2	2	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
UDPG_MGDP_dh_N	PF03721.14	gi|529078234|ref|YP_008377237.1|	-	0.15	11.7	0.0	0.22	11.1	0.0	1.2	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
TrkA_N	PF02254.18	gi|529078234|ref|YP_008377237.1|	-	0.15	12.4	0.0	0.37	11.1	0.0	1.7	2	0	0	2	2	1	0	TrkA-N	domain
Shikimate_DH	PF01488.20	gi|529078234|ref|YP_008377237.1|	-	0.17	12.0	0.0	0.31	11.1	0.0	1.3	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
Fer4_9	PF13187.6	gi|529078234|ref|YP_008377237.1|	-	0.22	11.7	0.5	0.39	10.9	0.5	1.4	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
GIDA	PF01134.22	gi|529078234|ref|YP_008377237.1|	-	0.33	10.0	0.5	1.1	8.3	0.2	1.8	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
Fer4	PF00037.27	gi|529078234|ref|YP_008377237.1|	-	0.5	10.3	3.5	0.18	11.7	0.7	1.8	2	0	0	2	2	1	0	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|529078234|ref|YP_008377237.1|	-	0.96	10.5	3.1	2.3	9.4	3.1	1.6	1	0	0	1	1	1	0	4Fe-4S	binding	domain
Heliorhodopsin	PF18761.1	gi|529078235|ref|YP_008377238.1|	-	1e-96	323.0	17.2	1.1e-96	322.8	17.2	1.0	1	0	0	1	1	1	1	Heliorhodopsin
Ytp1	PF10355.9	gi|529078235|ref|YP_008377238.1|	-	0.0065	15.7	0.8	0.0065	15.7	0.8	2.2	2	1	1	3	3	3	1	Protein	of	unknown	function	(Ytp1)
DUF2070	PF09843.9	gi|529078235|ref|YP_008377238.1|	-	1.6	6.9	12.3	1.8	6.7	12.3	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
Glycos_transf_2	PF00535.26	gi|529078236|ref|YP_008377239.1|	-	2.8e-19	69.6	0.0	3.7e-19	69.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|529078236|ref|YP_008377239.1|	-	8e-05	22.6	0.1	0.0001	22.3	0.1	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
ATPase	PF06745.13	gi|529078238|ref|YP_008377241.1|	-	2.8e-39	134.8	0.0	3.2e-39	134.6	0.0	1.0	1	0	0	1	1	1	1	KaiC
GvpD	PF07088.11	gi|529078238|ref|YP_008377241.1|	-	9.5e-06	24.5	0.0	0.00013	20.8	0.0	2.0	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
DnaB_C	PF03796.15	gi|529078238|ref|YP_008377241.1|	-	0.00025	20.5	0.0	0.00042	19.7	0.0	1.3	1	0	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
ATPase_2	PF01637.18	gi|529078238|ref|YP_008377241.1|	-	0.00028	20.9	0.0	0.00052	20.0	0.0	1.4	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_19	PF13245.6	gi|529078238|ref|YP_008377241.1|	-	0.00058	20.2	0.0	0.00093	19.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_24	PF13479.6	gi|529078238|ref|YP_008377241.1|	-	0.00074	19.3	0.0	0.019	14.7	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|529078238|ref|YP_008377241.1|	-	0.00082	19.0	0.0	0.0014	18.3	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|529078238|ref|YP_008377241.1|	-	0.0023	17.7	0.0	0.0033	17.2	0.0	1.2	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_22	PF13401.6	gi|529078238|ref|YP_008377241.1|	-	0.0053	17.0	0.1	0.0071	16.6	0.1	1.4	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|529078238|ref|YP_008377241.1|	-	0.0074	16.7	0.6	0.13	12.7	0.6	2.2	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RecA	PF00154.21	gi|529078238|ref|YP_008377241.1|	-	0.0088	15.5	0.0	0.02	14.4	0.0	1.6	2	0	0	2	2	2	1	recA	bacterial	DNA	recombination	protein
AAA_28	PF13521.6	gi|529078238|ref|YP_008377241.1|	-	0.012	15.9	0.1	0.053	13.8	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|529078238|ref|YP_008377241.1|	-	0.015	15.7	0.1	0.032	14.6	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_33	PF13671.6	gi|529078238|ref|YP_008377241.1|	-	0.015	15.4	0.2	0.027	14.6	0.2	1.6	1	1	0	1	1	1	0	AAA	domain
MEDS	PF14417.6	gi|529078238|ref|YP_008377241.1|	-	0.03	14.2	0.0	0.063	13.1	0.0	1.6	1	0	0	1	1	1	0	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
AAA_30	PF13604.6	gi|529078238|ref|YP_008377241.1|	-	0.034	13.9	0.0	0.042	13.6	0.0	1.3	1	1	0	1	1	1	0	AAA	domain
AAA_14	PF13173.6	gi|529078238|ref|YP_008377241.1|	-	0.039	14.0	0.0	0.099	12.7	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
T2SSE	PF00437.20	gi|529078238|ref|YP_008377241.1|	-	0.04	13.0	0.0	0.063	12.3	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
NACHT	PF05729.12	gi|529078238|ref|YP_008377241.1|	-	0.06	13.3	0.0	0.12	12.3	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
cobW	PF02492.19	gi|529078238|ref|YP_008377241.1|	-	0.062	12.9	0.0	0.14	11.8	0.0	1.6	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
ABC_tran	PF00005.27	gi|529078238|ref|YP_008377241.1|	-	0.066	13.7	0.0	0.091	13.3	0.0	1.4	1	1	0	1	1	1	0	ABC	transporter
Zeta_toxin	PF06414.12	gi|529078238|ref|YP_008377241.1|	-	0.078	12.3	0.0	0.14	11.4	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
RNA_helicase	PF00910.22	gi|529078238|ref|YP_008377241.1|	-	0.15	12.5	0.1	0.3	11.5	0.1	1.6	1	1	0	1	1	1	0	RNA	helicase
AAA_18	PF13238.6	gi|529078238|ref|YP_008377241.1|	-	0.18	12.4	0.0	0.33	11.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
zinc_ribbon_2	PF13240.6	gi|529078239|ref|YP_008377242.1|	-	0.0023	17.6	4.1	0.0039	16.8	4.1	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|529078239|ref|YP_008377242.1|	-	0.0028	17.0	2.2	0.0049	16.2	2.2	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|529078239|ref|YP_008377242.1|	-	0.009	16.0	0.3	0.0098	15.9	0.3	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-Sec23_Sec24	PF04810.15	gi|529078239|ref|YP_008377242.1|	-	0.026	14.6	0.0	0.026	14.6	0.0	1.7	2	0	0	2	2	2	0	Sec23/Sec24	zinc	finger
DNA_RNApol_7kD	PF03604.13	gi|529078239|ref|YP_008377242.1|	-	0.039	13.6	2.9	0.084	12.6	0.1	2.1	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-RING_7	PF02591.15	gi|529078239|ref|YP_008377242.1|	-	0.054	13.7	0.1	0.054	13.7	0.1	1.9	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|529078239|ref|YP_008377242.1|	-	0.23	11.0	4.5	0.48	10.0	4.5	1.5	1	0	0	1	1	1	0	TFIIB	zinc-binding
zinc_ribbon_4	PF13717.6	gi|529078239|ref|YP_008377242.1|	-	0.42	10.6	0.0	0.42	10.6	0.0	2.0	2	0	0	2	2	2	0	zinc-ribbon	domain
HalX	PF08663.10	gi|529078240|ref|YP_008377243.1|	-	3.3e-21	75.4	4.6	3.3e-21	75.4	4.6	2.2	2	0	0	2	2	2	1	HalX	domain
Response_reg	PF00072.24	gi|529078240|ref|YP_008377243.1|	-	2.1e-17	63.3	0.1	3.3e-17	62.7	0.1	1.3	1	0	0	1	1	1	1	Response	regulator	receiver	domain
zf-ribbon_3	PF13248.6	gi|529078241|ref|YP_008377244.1|	-	0.0071	15.7	0.0	0.012	14.9	0.0	1.5	1	0	0	1	1	1	1	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|529078241|ref|YP_008377244.1|	-	0.088	12.3	1.4	0.2	11.2	0.1	2.3	3	0	0	3	3	3	0	TFIIB	zinc-binding
zinc_ribbon_10	PF10058.9	gi|529078241|ref|YP_008377244.1|	-	0.14	11.9	0.2	0.57	10.0	0.3	1.9	2	0	0	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
zf-Mss51	PF13824.6	gi|529078241|ref|YP_008377244.1|	-	0.15	12.2	0.0	0.24	11.5	0.0	1.4	1	0	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DUF3341	PF11821.8	gi|529078244|ref|YP_008377247.1|	-	0.021	14.5	0.4	0.032	13.9	0.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3341)
Pro_isomerase	PF00160.21	gi|529078245|ref|YP_008377248.1|	-	8.7e-47	159.3	0.0	1e-46	159.1	0.0	1.0	1	0	0	1	1	1	1	Cyclophilin	type	peptidyl-prolyl	cis-trans	isomerase/CLD
Acetyltransf_3	PF13302.7	gi|529078246|ref|YP_008377249.1|	-	1.8e-26	93.5	0.0	2.2e-26	93.2	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|529078246|ref|YP_008377249.1|	-	6.1e-14	52.4	0.0	7e-14	52.2	0.0	1.0	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|529078246|ref|YP_008377249.1|	-	8.3e-13	48.6	0.0	1.1e-12	48.2	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_8	PF13523.6	gi|529078246|ref|YP_008377249.1|	-	4e-06	26.6	0.1	6.7e-06	25.9	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|529078246|ref|YP_008377249.1|	-	0.091	12.7	0.0	0.2	11.6	0.0	1.6	1	1	0	1	1	1	0	FR47-like	protein
Acetyltransf_10	PF13673.7	gi|529078246|ref|YP_008377249.1|	-	0.11	12.5	0.0	0.15	12.0	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
SBP_bac_5	PF00496.22	gi|529078247|ref|YP_008377250.1|	-	5.6e-48	163.8	6.9	1.8e-39	135.8	0.5	2.1	2	0	0	2	2	2	2	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|529078247|ref|YP_008377250.1|	-	0.00024	20.8	5.2	0.00042	20.0	5.2	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|529078247|ref|YP_008377250.1|	-	0.12	11.7	0.1	0.23	10.8	0.1	1.4	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
BPD_transp_1	PF00528.22	gi|529078248|ref|YP_008377251.1|	-	8.5e-31	107.1	11.6	8.5e-31	107.1	11.6	2.1	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|529078249|ref|YP_008377252.1|	-	6.2e-16	58.7	16.3	6.2e-16	58.7	16.3	2.3	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|529078249|ref|YP_008377252.1|	-	0.004	17.1	0.0	0.004	17.1	0.0	4.6	6	0	0	6	6	6	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
ABC_tran	PF00005.27	gi|529078250|ref|YP_008377253.1|	-	2.5e-30	105.8	0.0	3.9e-30	105.2	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|529078250|ref|YP_008377253.1|	-	7.5e-19	68.0	0.3	1.7e-18	66.9	0.3	1.7	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|529078250|ref|YP_008377253.1|	-	2.1e-08	34.4	0.8	1.6e-07	31.5	0.0	2.1	1	1	1	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|529078250|ref|YP_008377253.1|	-	9e-06	25.3	0.0	1.5e-05	24.6	0.0	1.3	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|529078250|ref|YP_008377253.1|	-	0.0036	17.6	0.2	0.49	10.7	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
TniB	PF05621.11	gi|529078250|ref|YP_008377253.1|	-	0.055	12.9	0.7	0.26	10.7	0.0	2.1	2	0	0	2	2	2	0	Bacterial	TniB	protein
DUF87	PF01935.17	gi|529078250|ref|YP_008377253.1|	-	0.061	13.4	0.1	0.15	12.1	0.0	1.6	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
AAA	PF00004.29	gi|529078250|ref|YP_008377253.1|	-	0.066	13.6	0.0	1.5	9.3	0.0	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|529078250|ref|YP_008377253.1|	-	0.086	13.2	0.3	0.17	12.2	0.3	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
Sigma54_activat	PF00158.26	gi|529078250|ref|YP_008377253.1|	-	0.11	12.2	0.1	0.44	10.2	0.0	1.8	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA_29	PF13555.6	gi|529078250|ref|YP_008377253.1|	-	0.12	12.2	0.0	0.23	11.2	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Herpes_ori_bp	PF02399.15	gi|529078250|ref|YP_008377253.1|	-	0.31	9.0	0.0	0.4	8.7	0.0	1.1	1	0	0	1	1	1	0	Origin	of	replication	binding	protein
ABC_tran	PF00005.27	gi|529078251|ref|YP_008377254.1|	-	1.6e-36	125.8	0.0	2.7e-36	125.1	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|529078251|ref|YP_008377254.1|	-	1.9e-13	50.7	0.2	4.1e-13	49.6	0.2	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|529078251|ref|YP_008377254.1|	-	9.9e-07	28.8	0.6	0.00092	19.1	0.2	2.3	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|529078251|ref|YP_008377254.1|	-	0.00042	20.6	0.1	0.0013	19.0	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|529078251|ref|YP_008377254.1|	-	0.00098	18.6	0.0	0.0028	17.1	0.0	1.6	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|529078251|ref|YP_008377254.1|	-	0.009	15.9	0.1	0.015	15.2	0.1	1.3	1	0	0	1	1	1	1	RsgA	GTPase
ATP-synt_ab	PF00006.25	gi|529078251|ref|YP_008377254.1|	-	0.02	14.5	0.0	0.02	14.5	0.0	1.2	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Sigma54_activat	PF00158.26	gi|529078251|ref|YP_008377254.1|	-	0.026	14.2	0.1	8.7	6.0	0.0	2.3	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA_29	PF13555.6	gi|529078251|ref|YP_008377254.1|	-	0.041	13.6	0.4	0.089	12.5	0.4	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|529078251|ref|YP_008377254.1|	-	0.063	13.7	2.4	0.072	13.5	1.0	2.0	2	1	0	2	2	2	0	AAA	ATPase	domain
AAA_5	PF07728.14	gi|529078251|ref|YP_008377254.1|	-	0.073	13.1	0.1	1.5	8.8	0.1	2.3	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_18	PF13238.6	gi|529078251|ref|YP_008377254.1|	-	0.088	13.4	0.0	0.19	12.3	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|529078251|ref|YP_008377254.1|	-	0.12	12.5	0.0	0.25	11.4	0.0	1.6	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
NB-ARC	PF00931.22	gi|529078251|ref|YP_008377254.1|	-	0.17	11.0	0.1	0.43	9.7	0.0	1.7	2	0	0	2	2	2	0	NB-ARC	domain
ABC_tran	PF00005.27	gi|529078254|ref|YP_008377257.1|	-	1.2e-26	93.9	0.0	1.8e-26	93.3	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529078254|ref|YP_008377257.1|	-	8e-15	55.4	0.8	1.1e-10	41.9	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TsaE	PF02367.17	gi|529078254|ref|YP_008377257.1|	-	0.0033	17.4	0.1	2	8.4	0.0	2.3	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_23	PF13476.6	gi|529078254|ref|YP_008377257.1|	-	0.0062	17.1	0.1	0.012	16.2	0.1	1.4	1	0	0	1	1	1	1	AAA	domain
SRP54	PF00448.22	gi|529078254|ref|YP_008377257.1|	-	0.021	14.4	0.1	0.04	13.5	0.1	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_30	PF13604.6	gi|529078254|ref|YP_008377257.1|	-	0.054	13.2	0.0	0.096	12.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|529078254|ref|YP_008377257.1|	-	0.13	12.0	0.1	0.28	11.0	0.1	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|529078254|ref|YP_008377257.1|	-	0.18	11.7	0.0	0.33	10.9	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_33	PF13671.6	gi|529078254|ref|YP_008377257.1|	-	0.18	12.0	0.0	0.27	11.4	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
ABC2_membrane_2	PF12679.7	gi|529078255|ref|YP_008377258.1|	-	9.3e-11	41.5	14.4	1.3e-10	41.0	14.4	1.4	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|529078255|ref|YP_008377258.1|	-	0.00046	19.4	5.5	0.00064	18.9	5.5	1.3	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|529078255|ref|YP_008377258.1|	-	0.0034	17.0	1.2	0.0059	16.2	1.2	1.6	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|529078255|ref|YP_008377258.1|	-	0.0041	16.6	3.9	0.0081	15.6	3.9	1.5	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_4	PF12730.7	gi|529078255|ref|YP_008377258.1|	-	0.14	12.1	4.9	0.075	13.0	1.3	2.2	1	1	1	2	2	2	0	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|529078256|ref|YP_008377259.1|	-	4.7e-10	39.2	9.0	1.1e-09	38.1	9.0	1.5	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|529078256|ref|YP_008377259.1|	-	0.0063	16.1	0.9	0.0063	16.1	0.9	1.8	2	0	0	2	2	2	1	ABC-2	family	transporter	protein
PSI_PSAK	PF01241.18	gi|529078256|ref|YP_008377259.1|	-	0.77	9.8	5.0	0.13	12.3	0.8	1.9	2	0	0	2	2	2	0	Photosystem	I	psaG	/	psaK
ABC2_membrane_3	PF12698.7	gi|529078256|ref|YP_008377259.1|	-	2.3	7.2	10.8	0.18	10.8	5.3	1.8	1	1	0	2	2	2	0	ABC-2	family	transporter	protein
Class_IIIsignal	PF04021.12	gi|529078256|ref|YP_008377259.1|	-	7.8	6.6	8.2	1.2	9.3	3.3	2.3	2	0	0	2	2	2	0	Class	III	signal	peptide
Metallophos_2	PF12850.7	gi|529078257|ref|YP_008377260.1|	-	4.1e-29	101.9	0.4	4.5e-29	101.8	0.4	1.0	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|529078257|ref|YP_008377260.1|	-	7.6e-05	23.3	2.3	0.11	13.0	0.1	2.3	1	1	1	2	2	2	2	Calcineurin-like	phosphoesterase
Usp	PF00582.26	gi|529078257|ref|YP_008377260.1|	-	0.0053	17.3	1.8	0.01	16.3	1.6	1.7	1	1	0	1	1	1	1	Universal	stress	protein	family
DUF4083	PF13314.6	gi|529078258|ref|YP_008377261.1|	-	0.0063	16.4	2.7	0.0072	16.2	2.7	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4083)
SPW	PF03779.14	gi|529078258|ref|YP_008377261.1|	-	0.04	13.5	0.9	0.057	13.0	0.9	1.2	1	0	0	1	1	1	0	SPW	repeat
DUF969	PF06149.12	gi|529078258|ref|YP_008377261.1|	-	0.066	12.6	0.7	0.078	12.4	0.7	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF969)
PetG	PF02529.15	gi|529078258|ref|YP_008377261.1|	-	0.14	12.0	4.5	0.42	10.5	4.5	1.8	1	1	0	1	1	1	0	Cytochrome	B6-F	complex	subunit	5
Peptidase_M29	PF02073.15	gi|529078260|ref|YP_008377263.1|	-	2.7e-65	220.7	0.1	3.1e-65	220.5	0.1	1.0	1	0	0	1	1	1	1	Thermophilic	metalloprotease	(M29)
Peptidase_M29	PF02073.15	gi|529078261|ref|YP_008377264.1|	-	3.8e-57	193.9	0.0	4.4e-57	193.7	0.0	1.0	1	0	0	1	1	1	1	Thermophilic	metalloprotease	(M29)
DUF373	PF04123.13	gi|529078262|ref|YP_008377265.1|	-	1.4e-117	392.9	8.3	1.6e-117	392.7	8.3	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
Abhydrolase_9_N	PF15420.6	gi|529078262|ref|YP_008377265.1|	-	0.078	13.0	10.0	0.13	12.2	10.0	1.4	1	0	0	1	1	1	0	Alpha/beta-hydrolase	family	N-terminus
EI24	PF07264.11	gi|529078262|ref|YP_008377265.1|	-	1.6	8.9	7.8	5.8	7.1	7.8	1.8	1	1	0	1	1	1	0	Etoposide-induced	protein	2.4	(EI24)
DUF2583	PF10762.9	gi|529078262|ref|YP_008377265.1|	-	4.3	7.8	9.4	0.22	11.9	0.7	2.9	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2583)
DUF192	PF02643.15	gi|529078263|ref|YP_008377266.1|	-	6.9e-30	103.1	0.0	8.4e-30	102.8	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1430
Creatininase	PF02633.14	gi|529078264|ref|YP_008377267.1|	-	9.2e-68	228.3	1.1	1e-67	228.1	1.1	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
TPR_MLP1_2	PF07926.12	gi|529078265|ref|YP_008377268.1|	-	0.018	15.1	0.1	0.26	11.4	0.0	2.1	2	0	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
DUF5082	PF16888.5	gi|529078265|ref|YP_008377268.1|	-	0.022	15.0	0.0	0.047	14.0	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5082)
YscO	PF07321.12	gi|529078265|ref|YP_008377268.1|	-	0.067	13.2	0.7	0.1	12.5	0.1	1.5	2	0	0	2	2	2	0	Type	III	secretion	protein	YscO
Laminin_II	PF06009.12	gi|529078265|ref|YP_008377268.1|	-	0.14	12.2	0.0	0.24	11.4	0.0	1.4	1	0	0	1	1	1	0	Laminin	Domain	II
DHNA	PF04038.12	gi|529078267|ref|YP_008377270.1|	-	1.7e-35	121.8	0.1	1.9e-35	121.6	0.1	1.0	1	0	0	1	1	1	1	Dihydroneopterin	aldolase
Aldo_ket_red	PF00248.21	gi|529078268|ref|YP_008377271.1|	-	7.1e-57	192.8	0.0	8.1e-57	192.6	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Peroxidase_ext	PF11895.8	gi|529078268|ref|YP_008377271.1|	-	0.21	11.5	0.0	0.42	10.6	0.0	1.4	1	0	0	1	1	1	0	Fungal	peroxidase	extension	region
tRNA-synt_1	PF00133.22	gi|529078269|ref|YP_008377272.1|	-	3.4e-174	580.4	2.7	3.4e-174	580.4	2.7	1.5	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|529078269|ref|YP_008377272.1|	-	6.5e-29	100.9	0.0	1.5e-28	99.6	0.0	1.7	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.11	gi|529078269|ref|YP_008377272.1|	-	1.3e-25	90.0	0.1	2.2e-09	36.5	0.0	3.9	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1_2	PF13603.6	gi|529078269|ref|YP_008377272.1|	-	0.00024	20.7	0.0	0.00057	19.4	0.0	1.6	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1e	PF01406.19	gi|529078269|ref|YP_008377272.1|	-	0.15	11.4	0.0	13	5.0	0.0	2.5	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(C)	catalytic	domain
FaeA	PF04703.12	gi|529078270|ref|YP_008377273.1|	-	0.017	15.5	0.1	0.018	15.4	0.1	1.0	1	0	0	1	1	1	0	FaeA-like	protein
HTH_DeoR	PF08220.12	gi|529078270|ref|YP_008377273.1|	-	0.018	14.8	0.4	0.02	14.6	0.4	1.1	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|529078270|ref|YP_008377273.1|	-	0.02	14.9	0.1	0.022	14.8	0.1	1.1	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
PaaX	PF07848.12	gi|529078270|ref|YP_008377273.1|	-	0.059	13.6	0.1	0.069	13.4	0.1	1.1	1	0	0	1	1	1	0	PaaX-like	protein
EutK_C	PF16365.5	gi|529078270|ref|YP_008377273.1|	-	0.14	12.2	0.0	0.16	12.0	0.0	1.1	1	0	0	1	1	1	0	Ethanolamine	utilization	protein	EutK	C-terminus
Mnd1	PF03962.15	gi|529078270|ref|YP_008377273.1|	-	0.16	12.3	0.0	0.17	12.2	0.0	1.1	1	0	0	1	1	1	0	Mnd1	HTH	domain
TrmB	PF01978.19	gi|529078271|ref|YP_008377274.1|	-	1.7e-11	43.8	0.1	2.2e-11	43.4	0.1	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|529078271|ref|YP_008377274.1|	-	7.1e-06	26.0	0.3	1.4e-05	25.0	0.3	1.5	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|529078271|ref|YP_008377274.1|	-	7.7e-06	25.6	0.2	1.4e-05	24.8	0.2	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|529078271|ref|YP_008377274.1|	-	0.00021	21.2	0.0	0.00056	19.8	0.0	1.7	2	1	1	3	3	3	1	HTH	domain
FUR	PF01475.19	gi|529078271|ref|YP_008377274.1|	-	0.0026	17.9	0.0	0.006	16.7	0.0	1.6	1	1	0	1	1	1	1	Ferric	uptake	regulator	family
MarR	PF01047.22	gi|529078271|ref|YP_008377274.1|	-	0.0028	17.5	0.0	0.0045	16.9	0.0	1.3	1	0	0	1	1	1	1	MarR	family
Dimerisation2	PF16864.5	gi|529078271|ref|YP_008377274.1|	-	0.015	15.3	0.1	0.022	14.7	0.1	1.2	1	0	0	1	1	1	0	Dimerisation	domain
PadR	PF03551.14	gi|529078271|ref|YP_008377274.1|	-	0.016	15.2	0.0	0.04	13.9	0.0	1.6	1	1	1	2	2	2	0	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.6	gi|529078271|ref|YP_008377274.1|	-	0.023	15.2	0.0	0.036	14.6	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
SMC_ScpB	PF04079.16	gi|529078271|ref|YP_008377274.1|	-	0.032	13.9	0.0	0.062	12.9	0.0	1.5	1	1	0	1	1	1	0	Segregation	and	condensation	complex	subunit	ScpB
Replic_Relax	PF13814.6	gi|529078271|ref|YP_008377274.1|	-	0.092	12.8	0.0	0.11	12.5	0.0	1.2	1	0	0	1	1	1	0	Replication-relaxation
B1	PF02246.15	gi|529078271|ref|YP_008377274.1|	-	0.11	12.5	0.0	0.21	11.6	0.0	1.4	1	0	0	1	1	1	0	Protein	L	b1	domain
HTH_24	PF13412.6	gi|529078271|ref|YP_008377274.1|	-	0.19	11.3	0.0	0.27	10.8	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|529078272|ref|YP_008377275.1|	-	7e-16	57.8	0.2	1.3e-15	57.0	0.1	1.5	2	0	0	2	2	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|529078272|ref|YP_008377275.1|	-	1.3e-11	44.3	0.0	2.3e-11	43.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|529078272|ref|YP_008377275.1|	-	2.5e-09	36.8	0.1	4.1e-09	36.1	0.1	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|529078272|ref|YP_008377275.1|	-	5.5e-09	35.4	0.1	8.2e-09	34.9	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|529078272|ref|YP_008377275.1|	-	3.8e-08	33.1	0.1	8.4e-08	32.0	0.1	1.5	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|529078272|ref|YP_008377275.1|	-	8.5e-07	28.8	0.0	1.2e-06	28.3	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|529078272|ref|YP_008377275.1|	-	3e-06	27.0	0.2	7.9e-06	25.7	0.0	1.7	2	0	0	2	2	2	1	MarR	family
RepL	PF05732.11	gi|529078272|ref|YP_008377275.1|	-	0.00044	19.7	0.0	0.001	18.5	0.0	1.6	2	0	0	2	2	2	1	Firmicute	plasmid	replication	protein	(RepL)
HTH_23	PF13384.6	gi|529078272|ref|YP_008377275.1|	-	0.00045	19.9	0.0	0.00069	19.3	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|529078272|ref|YP_008377275.1|	-	0.00072	19.6	0.0	0.0015	18.6	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|529078272|ref|YP_008377275.1|	-	0.00078	19.3	0.1	0.0012	18.8	0.1	1.3	1	0	0	1	1	1	1	HTH	domain
Rrf2	PF02082.20	gi|529078272|ref|YP_008377275.1|	-	0.0008	19.7	0.1	0.0011	19.3	0.1	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
DUF4423	PF14394.6	gi|529078272|ref|YP_008377275.1|	-	0.0012	18.6	0.0	0.0013	18.5	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HTH_Crp_2	PF13545.6	gi|529078272|ref|YP_008377275.1|	-	0.0012	18.8	0.1	0.0025	17.8	0.1	1.7	1	1	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_43	PF09904.9	gi|529078272|ref|YP_008377275.1|	-	0.0019	18.1	0.0	0.0026	17.6	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_29	PF13551.6	gi|529078272|ref|YP_008377275.1|	-	0.003	17.6	0.0	0.0046	16.9	0.0	1.4	1	1	0	1	1	1	1	Winged	helix-turn	helix
Arg_repressor	PF01316.21	gi|529078272|ref|YP_008377275.1|	-	0.004	16.9	0.1	0.007	16.1	0.1	1.4	1	0	0	1	1	1	1	Arginine	repressor,	DNA	binding	domain
Penicillinase_R	PF03965.16	gi|529078272|ref|YP_008377275.1|	-	0.0056	17.0	0.1	0.0064	16.8	0.1	1.1	1	0	0	1	1	1	1	Penicillinase	repressor
HTH_26	PF13443.6	gi|529078272|ref|YP_008377275.1|	-	0.006	17.0	0.4	0.018	15.5	0.1	1.9	2	0	0	2	2	2	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_15	PF12324.8	gi|529078272|ref|YP_008377275.1|	-	0.0072	16.3	0.3	0.017	15.1	0.1	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	alkylmercury	lyase
HTH_34	PF13601.6	gi|529078272|ref|YP_008377275.1|	-	0.0077	16.4	0.0	0.0098	16.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
RP-C	PF03428.13	gi|529078272|ref|YP_008377275.1|	-	0.0081	15.8	0.0	0.012	15.3	0.0	1.3	1	0	0	1	1	1	1	Replication	protein	C	N-terminal	domain
HTH_27	PF13463.6	gi|529078272|ref|YP_008377275.1|	-	0.014	15.9	0.0	0.024	15.1	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_DeoR	PF08220.12	gi|529078272|ref|YP_008377275.1|	-	0.017	14.8	0.5	0.029	14.1	0.1	1.5	2	0	0	2	2	1	0	DeoR-like	helix-turn-helix	domain
DUF977	PF06163.11	gi|529078272|ref|YP_008377275.1|	-	0.033	14.1	0.0	0.04	13.9	0.0	1.2	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF977)
MerR_1	PF13411.6	gi|529078272|ref|YP_008377275.1|	-	0.038	14.1	0.0	0.065	13.3	0.0	1.4	1	0	0	1	1	1	0	MerR	HTH	family	regulatory	protein
FUR	PF01475.19	gi|529078272|ref|YP_008377275.1|	-	0.045	13.9	0.0	0.12	12.6	0.0	1.7	1	1	1	2	2	2	0	Ferric	uptake	regulator	family
DUF2513	PF10711.9	gi|529078272|ref|YP_008377275.1|	-	0.049	13.9	0.3	0.26	11.6	0.0	1.9	1	1	1	2	2	2	0	Hypothetical	protein	(DUF2513)
Fe_dep_repress	PF01325.19	gi|529078272|ref|YP_008377275.1|	-	0.05	13.8	0.0	0.099	12.9	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Mga	PF05043.13	gi|529078272|ref|YP_008377275.1|	-	0.054	14.1	0.0	0.076	13.6	0.0	1.2	1	0	0	1	1	1	0	Mga	helix-turn-helix	domain
HTH_3	PF01381.22	gi|529078272|ref|YP_008377275.1|	-	0.08	13.0	0.0	0.15	12.2	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix
DUF2250	PF10007.9	gi|529078272|ref|YP_008377275.1|	-	0.091	12.9	1.2	0.46	10.6	1.3	1.8	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
S10_plectin	PF03501.15	gi|529078272|ref|YP_008377275.1|	-	0.092	12.8	0.0	0.12	12.4	0.0	1.2	1	0	0	1	1	1	0	Plectin/S10	domain
Sulfolobus_pRN	PF05584.11	gi|529078272|ref|YP_008377275.1|	-	0.1	12.6	0.0	0.15	12.1	0.0	1.3	1	0	0	1	1	1	0	Sulfolobus	plasmid	regulatory	protein
DUF3489	PF11994.8	gi|529078272|ref|YP_008377275.1|	-	0.12	12.5	0.1	0.2	11.7	0.1	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3489)
OrfB_IS605	PF01385.19	gi|529078274|ref|YP_008377277.1|	-	9.4e-22	77.5	0.3	1.8e-21	76.6	0.3	1.4	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|529078274|ref|YP_008377277.1|	-	8.9e-19	67.2	0.8	1.8e-18	66.2	0.8	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.8	gi|529078274|ref|YP_008377277.1|	-	2.9e-05	23.5	0.1	6.2e-05	22.4	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF3445	PF11927.8	gi|529078274|ref|YP_008377277.1|	-	0.025	14.2	0.3	0.041	13.5	0.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3445)
DUF1451	PF07295.11	gi|529078274|ref|YP_008377277.1|	-	0.18	11.8	3.1	0.45	10.6	3.1	1.6	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
MFS_1	PF07690.16	gi|529078275|ref|YP_008377278.1|	-	6.9e-40	137.0	36.0	6.9e-40	137.0	36.0	1.7	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Gate	PF07670.14	gi|529078275|ref|YP_008377278.1|	-	0.0078	16.5	0.2	0.064	13.5	0.0	2.6	3	1	0	3	3	3	1	Nucleoside	recognition
OATP	PF03137.20	gi|529078275|ref|YP_008377278.1|	-	0.012	14.0	0.1	0.023	13.0	0.0	1.4	1	1	0	1	1	1	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
DDE_Tnp_IS66	PF03050.14	gi|529078277|ref|YP_008377280.1|	-	4.8e-49	167.3	0.1	4.8e-49	167.3	0.1	1.6	2	0	0	2	2	2	1	Transposase	IS66	family
zf-IS66	PF13005.7	gi|529078277|ref|YP_008377280.1|	-	7.4e-06	26.3	2.6	2.1e-05	24.8	2.6	1.8	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
GAS	PF13851.6	gi|529078277|ref|YP_008377280.1|	-	0.00063	19.2	4.5	0.0012	18.2	4.5	1.3	1	0	0	1	1	1	1	Growth-arrest	specific	micro-tubule	binding
bZIP_1	PF00170.21	gi|529078277|ref|YP_008377280.1|	-	0.0022	18.0	4.7	0.005	16.9	4.7	1.6	1	0	0	1	1	1	1	bZIP	transcription	factor
Csm1_N	PF18504.1	gi|529078277|ref|YP_008377280.1|	-	0.0048	17.2	2.4	0.013	15.8	2.4	1.7	1	0	0	1	1	1	1	Csm1	N-terminal	domain
ATG16	PF08614.11	gi|529078277|ref|YP_008377280.1|	-	0.0062	16.8	2.2	0.0062	16.8	2.2	2.4	3	0	0	3	3	2	1	Autophagy	protein	16	(ATG16)
CENP-F_leu_zip	PF10473.9	gi|529078277|ref|YP_008377280.1|	-	0.0065	16.5	7.2	0.017	15.2	7.2	1.6	1	0	0	1	1	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Tropomyosin_1	PF12718.7	gi|529078277|ref|YP_008377280.1|	-	0.0075	16.4	3.9	0.016	15.3	3.9	1.5	1	0	0	1	1	1	1	Tropomyosin	like
Angiomotin_C	PF12240.8	gi|529078277|ref|YP_008377280.1|	-	0.01	15.4	0.4	0.019	14.5	0.4	1.4	1	0	0	1	1	1	0	Angiomotin	C	terminal
MCC-bdg_PDZ	PF10506.9	gi|529078277|ref|YP_008377280.1|	-	0.03	14.3	3.2	0.077	13.0	3.2	1.7	1	0	0	1	1	1	0	PDZ	domain	of	MCC-2	bdg	protein	for	Usher	syndrome
Troponin	PF00992.20	gi|529078277|ref|YP_008377280.1|	-	0.058	13.7	5.3	0.049	13.9	3.5	1.9	2	0	0	2	2	1	0	Troponin
Nsp1_C	PF05064.13	gi|529078277|ref|YP_008377280.1|	-	0.067	13.0	1.4	0.14	11.9	1.4	1.5	1	0	0	1	1	1	0	Nsp1-like	C-terminal	region
zf-FPG_IleRS	PF06827.14	gi|529078277|ref|YP_008377280.1|	-	0.07	13.0	2.8	7.3	6.6	0.1	3.2	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
BID	PF06393.11	gi|529078277|ref|YP_008377280.1|	-	0.082	12.4	1.6	0.091	12.3	0.0	1.8	2	0	0	2	2	2	0	BH3	interacting	domain	(BID)
TMF_TATA_bd	PF12325.8	gi|529078277|ref|YP_008377280.1|	-	0.085	13.1	8.3	0.24	11.6	8.3	1.7	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
Shugoshin_N	PF07558.11	gi|529078277|ref|YP_008377280.1|	-	0.12	12.2	1.2	0.29	11.0	1.2	1.6	1	0	0	1	1	1	0	Shugoshin	N-terminal	coiled-coil	region
Phage_GP20	PF06810.11	gi|529078277|ref|YP_008377280.1|	-	0.13	12.1	2.4	0.27	11.0	2.4	1.5	1	0	0	1	1	1	0	Phage	minor	structural	protein	GP20
SOUL	PF04832.12	gi|529078277|ref|YP_008377280.1|	-	0.14	12.3	0.1	0.27	11.4	0.1	1.4	1	0	0	1	1	1	0	SOUL	heme-binding	protein
YabA	PF06156.13	gi|529078277|ref|YP_008377280.1|	-	0.19	12.4	3.0	0.17	12.5	1.5	1.8	2	0	0	2	2	1	0	Initiation	control	protein	YabA
DDE_Tnp_IS240	PF13610.6	gi|529078277|ref|YP_008377280.1|	-	0.22	11.8	2.3	0.32	11.2	0.1	2.3	2	1	0	2	2	2	0	DDE	domain
Spc7	PF08317.11	gi|529078277|ref|YP_008377280.1|	-	0.51	9.2	6.7	0.31	9.9	2.6	2.0	2	0	0	2	2	2	0	Spc7	kinetochore	protein
TolA_bind_tri	PF16331.5	gi|529078277|ref|YP_008377280.1|	-	0.57	10.3	10.7	0.4	10.8	7.1	2.3	2	0	0	2	2	2	0	TolA	binding	protein	trimerisation
PKcGMP_CC	PF16808.5	gi|529078277|ref|YP_008377280.1|	-	0.9	9.4	14.7	0.12	12.3	4.8	2.8	1	1	1	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
Zn-ribbon_8	PF09723.10	gi|529078277|ref|YP_008377280.1|	-	1.2	9.3	5.4	19	5.5	0.2	2.7	2	0	0	2	2	2	0	Zinc	ribbon	domain
MPS2	PF17060.5	gi|529078277|ref|YP_008377280.1|	-	1.6	7.9	4.1	3.2	6.9	4.1	1.4	1	0	0	1	1	1	0	Monopolar	spindle	protein	2
APC_N_CC	PF16689.5	gi|529078277|ref|YP_008377280.1|	-	1.7	8.8	6.1	4.5	7.4	6.1	1.7	1	0	0	1	1	1	0	Coiled-coil	N-terminus	of	APC,	dimerisation	domain
DivIC	PF04977.15	gi|529078277|ref|YP_008377280.1|	-	2.3	8.0	9.8	0.29	10.9	4.5	2.2	2	0	0	2	2	2	0	Septum	formation	initiator
DUF4407	PF14362.6	gi|529078277|ref|YP_008377280.1|	-	2.5	7.4	5.1	0.54	9.6	1.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
UPF0242	PF06785.11	gi|529078277|ref|YP_008377280.1|	-	2.8	8.0	6.5	5	7.2	6.5	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
bZIP_2	PF07716.15	gi|529078277|ref|YP_008377280.1|	-	3.2	7.9	11.9	0.74	10.0	7.5	2.4	2	1	0	2	2	1	0	Basic	region	leucine	zipper
Rubredoxin_2	PF18073.1	gi|529078277|ref|YP_008377280.1|	-	3.3	7.5	6.0	4.7	7.0	0.3	2.6	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
TSC22	PF01166.18	gi|529078277|ref|YP_008377280.1|	-	5.2	7.5	8.4	21	5.5	4.9	3.2	2	1	1	3	3	3	0	TSC-22/dip/bun	family
HTH_10	PF04967.12	gi|529078278|ref|YP_008377281.1|	-	3.4e-16	58.8	0.0	4.7e-16	58.3	0.0	1.2	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.16	gi|529078278|ref|YP_008377281.1|	-	3.6e-06	26.4	0.1	8.7e-06	25.2	0.1	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
MarR_2	PF12802.7	gi|529078278|ref|YP_008377281.1|	-	0.00016	21.5	0.4	0.00042	20.1	0.4	1.7	1	1	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.6	gi|529078278|ref|YP_008377281.1|	-	0.0011	18.8	0.7	0.0022	17.8	0.7	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|529078278|ref|YP_008377281.1|	-	0.0022	17.5	0.1	0.0047	16.5	0.1	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
BAT	PF15915.5	gi|529078278|ref|YP_008377281.1|	-	0.0049	16.7	0.1	0.008	16.1	0.1	1.3	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
HTH_20	PF12840.7	gi|529078278|ref|YP_008377281.1|	-	0.021	14.9	0.1	0.044	13.9	0.1	1.6	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|529078278|ref|YP_008377281.1|	-	0.091	12.7	0.2	0.17	11.8	0.2	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
UPF0122	PF04297.14	gi|529078278|ref|YP_008377281.1|	-	0.091	13.0	0.0	0.15	12.3	0.0	1.3	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HalOD1	PF18545.1	gi|529078279|ref|YP_008377282.1|	-	6.2e-13	48.8	6.7	7.1e-13	48.6	6.7	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
MGS	PF02142.22	gi|529078280|ref|YP_008377283.1|	-	1.7e-15	57.0	0.0	2e-15	56.7	0.0	1.1	1	0	0	1	1	1	1	MGS-like	domain
DUF3240	PF11582.8	gi|529078280|ref|YP_008377283.1|	-	0.038	14.1	0.0	0.055	13.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3240)
YdjM	PF04307.14	gi|529078281|ref|YP_008377284.1|	-	8e-13	48.1	9.9	2.4e-12	46.5	9.9	1.7	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
CcmB	PF03379.13	gi|529078281|ref|YP_008377284.1|	-	0.014	14.9	2.6	0.021	14.3	2.2	1.5	1	1	0	1	1	1	0	CcmB	protein
DUF4225	PF13988.6	gi|529078281|ref|YP_008377284.1|	-	0.015	14.9	0.0	0.03	13.9	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4225)
Glyoxalase	PF00903.25	gi|529078283|ref|YP_008377286.1|	-	1.2e-13	51.3	0.0	3.4e-10	40.2	0.0	2.4	2	1	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|529078283|ref|YP_008377286.1|	-	1.2e-05	26.0	0.6	3.5e-05	24.5	0.2	1.9	2	0	0	2	2	2	1	Glyoxalase-like	domain
YdjM	PF04307.14	gi|529078284|ref|YP_008377287.1|	-	0.00024	20.5	16.3	0.0096	15.2	16.2	2.5	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
DUF4184	PF13803.6	gi|529078284|ref|YP_008377287.1|	-	1.1	8.9	7.0	0.21	11.3	3.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4184)
NCE101	PF11654.8	gi|529078285|ref|YP_008377288.1|	-	0.15	11.8	0.2	0.37	10.5	0.2	1.6	1	0	0	1	1	1	0	Non-classical	export	protein	1
Amino_oxidase	PF01593.24	gi|529078288|ref|YP_008377291.1|	-	5.2e-32	111.7	0.1	6.4e-32	111.4	0.1	1.1	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|529078288|ref|YP_008377291.1|	-	6.2e-12	45.6	0.0	1.6e-11	44.3	0.0	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|529078288|ref|YP_008377291.1|	-	4.6e-07	29.8	0.8	0.00064	19.4	0.1	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|529078288|ref|YP_008377291.1|	-	5.6e-05	22.5	0.0	0.0015	17.8	0.0	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|529078288|ref|YP_008377291.1|	-	0.0024	17.2	0.2	0.0037	16.6	0.2	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Thi4	PF01946.17	gi|529078288|ref|YP_008377291.1|	-	0.0028	17.0	0.2	0.0047	16.2	0.2	1.3	1	0	0	1	1	1	1	Thi4	family
NAD_binding_9	PF13454.6	gi|529078288|ref|YP_008377291.1|	-	0.0058	16.6	0.0	0.35	10.9	0.0	2.3	2	0	0	2	2	2	1	FAD-NAD(P)-binding
3HCDH_N	PF02737.18	gi|529078288|ref|YP_008377291.1|	-	0.012	15.6	0.0	0.017	15.0	0.0	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
HI0933_like	PF03486.14	gi|529078288|ref|YP_008377291.1|	-	0.012	14.3	0.1	0.077	11.7	0.2	1.9	2	0	0	2	2	2	0	HI0933-like	protein
FAD_binding_2	PF00890.24	gi|529078288|ref|YP_008377291.1|	-	0.015	14.4	0.4	0.025	13.6	0.4	1.3	1	0	0	1	1	1	0	FAD	binding	domain
Pyr_redox_3	PF13738.6	gi|529078288|ref|YP_008377291.1|	-	0.025	13.8	0.0	1.7	7.8	0.0	2.1	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|529078288|ref|YP_008377291.1|	-	0.046	14.3	0.1	0.12	12.9	0.1	1.8	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
FMO-like	PF00743.19	gi|529078288|ref|YP_008377291.1|	-	0.048	12.1	0.0	0.063	11.7	0.0	1.1	1	0	0	1	1	1	0	Flavin-binding	monooxygenase-like
Metallophos_2	PF12850.7	gi|529078289|ref|YP_008377292.1|	-	3.8e-31	108.5	0.0	4.6e-31	108.2	0.0	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|529078289|ref|YP_008377292.1|	-	1.1e-10	42.4	1.4	2.2e-10	41.4	1.4	1.4	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.6	gi|529078289|ref|YP_008377292.1|	-	0.096	12.0	0.0	0.47	9.7	0.0	1.9	2	0	0	2	2	2	0	Metallophosphoesterase,	calcineurin	superfamily
RNA_binding	PF01877.17	gi|529078290|ref|YP_008377293.1|	-	1.8e-10	41.1	0.2	3.2e-09	37.1	0.2	2.0	1	1	0	1	1	1	1	RNA	binding
TPR_9	PF13371.6	gi|529078290|ref|YP_008377293.1|	-	0.1	12.7	0.1	0.16	12.1	0.1	1.4	1	0	0	1	1	1	0	Tetratricopeptide	repeat
AAA_17	PF13207.6	gi|529078291|ref|YP_008377294.1|	-	1.2e-13	51.7	0.0	1.9e-13	51.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|529078291|ref|YP_008377294.1|	-	9.9e-11	42.3	0.0	1.4e-10	41.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|529078291|ref|YP_008377294.1|	-	2e-05	24.8	0.0	2.9e-05	24.2	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
PEP-utilizers	PF00391.23	gi|529078291|ref|YP_008377294.1|	-	0.0036	17.0	1.0	0.029	14.1	1.0	2.2	1	1	0	1	1	1	1	PEP-utilising	enzyme,	mobile	domain
AAA_30	PF13604.6	gi|529078291|ref|YP_008377294.1|	-	0.036	13.8	0.4	0.091	12.5	0.4	1.6	1	1	0	1	1	1	0	AAA	domain
ADK	PF00406.22	gi|529078291|ref|YP_008377294.1|	-	0.068	13.3	0.0	0.083	13.0	0.0	1.3	1	1	0	1	1	1	0	Adenylate	kinase
zf-CSL	PF05207.13	gi|529078292|ref|YP_008377295.1|	-	3.2e-05	23.6	0.1	3.2e-05	23.6	0.1	1.0	1	0	0	1	1	1	1	CSL	zinc	finger
zf-C2H2	PF00096.26	gi|529078292|ref|YP_008377295.1|	-	0.025	15.0	0.0	0.044	14.3	0.0	1.5	1	1	0	1	1	1	0	Zinc	finger,	C2H2	type
DUF2244	PF10003.9	gi|529078293|ref|YP_008377296.1|	-	0.082	12.6	0.0	0.082	12.6	0.0	1.0	1	0	0	1	1	1	0	Integral	membrane	protein	(DUF2244)
PhoU_div	PF01865.16	gi|529078294|ref|YP_008377297.1|	-	1.1e-15	57.5	3.1	4.5e-15	55.6	3.1	1.8	1	1	0	1	1	1	1	Protein	of	unknown	function	DUF47
DUF4455	PF14643.6	gi|529078294|ref|YP_008377297.1|	-	0.046	12.4	0.0	0.14	10.8	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4455)
DUF1993	PF09351.10	gi|529078294|ref|YP_008377297.1|	-	0.048	13.8	0.0	0.31	11.2	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1993)
DUF2877	PF11392.8	gi|529078294|ref|YP_008377297.1|	-	0.094	13.4	0.0	0.19	12.5	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2877)
DUF948	PF06103.11	gi|529078294|ref|YP_008377297.1|	-	0.12	12.6	0.8	21	5.5	0.0	3.4	2	1	2	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF948)
Rhodanese	PF00581.20	gi|529078295|ref|YP_008377298.1|	-	2e-35	121.5	0.4	1.1e-18	67.7	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
Rhodanese	PF00581.20	gi|529078296|ref|YP_008377299.1|	-	1.1e-36	125.6	0.0	1.4e-19	70.6	0.0	2.0	2	0	0	2	2	2	2	Rhodanese-like	domain
AI-2E_transport	PF01594.16	gi|529078297|ref|YP_008377300.1|	-	7.9e-22	77.8	33.1	4.7e-21	75.3	33.1	1.8	1	1	0	1	1	1	1	AI-2E	family	transporter
2Fe-2S_thioredx	PF01257.19	gi|529078298|ref|YP_008377301.1|	-	2.6e-47	160.3	0.1	3e-47	160.1	0.1	1.0	1	0	0	1	1	1	1	Thioredoxin-like	[2Fe-2S]	ferredoxin
DUF1636	PF07845.11	gi|529078298|ref|YP_008377301.1|	-	0.042	14.3	0.2	0.072	13.5	0.2	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1636)
Complex1_51K	PF01512.17	gi|529078299|ref|YP_008377302.1|	-	2.4e-51	173.6	0.0	5.6e-51	172.4	0.0	1.6	2	0	0	2	2	2	1	Respiratory-chain	NADH	dehydrogenase	51	Kd	subunit
NADH_4Fe-4S	PF10589.9	gi|529078299|ref|YP_008377302.1|	-	5.4e-29	100.1	0.0	5.4e-29	100.1	0.0	2.4	3	0	0	3	3	1	1	NADH-ubiquinone	oxidoreductase-F	iron-sulfur	binding	region
Fer4	PF00037.27	gi|529078299|ref|YP_008377302.1|	-	9.3e-14	50.6	27.5	3.2e-08	33.0	6.0	3.3	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|529078299|ref|YP_008377302.1|	-	5.9e-10	39.6	10.2	5.9e-10	39.6	10.2	2.6	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|529078299|ref|YP_008377302.1|	-	7.6e-10	38.8	13.1	7.6e-10	38.8	13.1	2.5	3	0	0	3	3	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|529078299|ref|YP_008377302.1|	-	3.3e-09	36.7	13.0	3.3e-09	36.7	13.0	2.9	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|529078299|ref|YP_008377302.1|	-	5.8e-09	36.0	27.9	1.1e-07	31.8	14.1	3.1	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
SLBB	PF10531.9	gi|529078299|ref|YP_008377302.1|	-	8.7e-09	35.1	3.1	2.2e-08	33.8	3.1	1.8	1	0	0	1	1	1	1	SLBB	domain
Fer4_2	PF12797.7	gi|529078299|ref|YP_008377302.1|	-	6.9e-07	29.0	23.4	0.00013	21.9	3.6	3.9	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|529078299|ref|YP_008377302.1|	-	3e-06	27.0	26.7	2.4e-05	24.2	5.1	3.7	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|529078299|ref|YP_008377302.1|	-	0.00013	22.2	27.1	0.0017	18.7	4.9	3.3	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|529078299|ref|YP_008377302.1|	-	0.00025	21.9	22.4	0.0012	19.7	2.3	3.1	3	0	0	3	3	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_17	PF13534.6	gi|529078299|ref|YP_008377302.1|	-	0.0009	19.7	15.8	0.078	13.5	1.3	3.4	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|529078299|ref|YP_008377302.1|	-	0.0013	19.5	18.4	0.0034	18.2	5.4	3.2	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|529078299|ref|YP_008377302.1|	-	0.0037	18.1	9.2	0.13	13.2	1.5	2.6	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
2Fe-2S_thioredx	PF01257.19	gi|529078299|ref|YP_008377302.1|	-	0.0049	16.7	0.0	0.013	15.4	0.0	1.7	1	0	0	1	1	1	1	Thioredoxin-like	[2Fe-2S]	ferredoxin
Fer4_15	PF13459.6	gi|529078299|ref|YP_008377302.1|	-	0.024	15.4	1.7	0.024	15.4	1.7	4.3	3	1	0	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_8	PF13183.6	gi|529078299|ref|YP_008377302.1|	-	0.025	15.0	20.7	0.087	13.3	1.7	2.8	2	1	0	2	2	2	0	4Fe-4S	dicluster	domain
DUF1636	PF07845.11	gi|529078299|ref|YP_008377302.1|	-	0.038	14.4	0.0	0.11	13.0	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1636)
Fer4_13	PF13370.6	gi|529078299|ref|YP_008377302.1|	-	0.56	10.8	22.1	0.48	11.0	4.8	3.5	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_18	PF13746.6	gi|529078299|ref|YP_008377302.1|	-	2.1	8.6	15.3	1.6	9.0	2.8	2.3	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer2_4	PF13510.6	gi|529078300|ref|YP_008377303.1|	-	1.3e-22	79.7	2.1	1.3e-22	79.7	2.1	3.0	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
NADH-G_4Fe-4S_3	PF10588.9	gi|529078300|ref|YP_008377303.1|	-	1.4e-10	40.5	0.8	1.4e-10	40.5	0.8	2.3	2	0	0	2	2	1	1	NADH-ubiquinone	oxidoreductase-G	iron-sulfur	binding	region
Molybdopterin	PF00384.22	gi|529078300|ref|YP_008377303.1|	-	6e-10	38.6	0.2	5.1e-08	32.3	0.1	2.1	2	0	0	2	2	2	1	Molybdopterin	oxidoreductase
Fer4	PF00037.27	gi|529078300|ref|YP_008377303.1|	-	1.9e-09	37.0	17.5	3.1e-06	26.8	1.6	3.4	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|529078300|ref|YP_008377303.1|	-	9.8e-08	32.0	8.0	9.8e-08	32.0	8.0	3.4	1	1	3	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|529078300|ref|YP_008377303.1|	-	1.3e-07	32.0	5.3	1.3e-07	32.0	5.3	3.4	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Molybdop_Fe4S4	PF04879.16	gi|529078300|ref|YP_008377303.1|	-	1.8e-07	31.0	0.8	1.8e-07	31.0	0.8	2.6	3	0	0	3	3	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
Fer4_21	PF14697.6	gi|529078300|ref|YP_008377303.1|	-	1.9e-07	31.1	5.9	1.9e-07	31.1	5.9	2.8	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|529078300|ref|YP_008377303.1|	-	2.6e-06	27.3	12.1	0.00012	22.0	2.4	3.9	5	0	0	5	5	4	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|529078300|ref|YP_008377303.1|	-	7.7e-06	25.9	12.3	7.7e-06	25.9	12.3	3.4	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|529078300|ref|YP_008377303.1|	-	5.2e-05	23.7	30.8	0.00046	20.7	10.2	3.4	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|529078300|ref|YP_008377303.1|	-	7.3e-05	22.6	14.1	0.0015	18.5	4.7	4.1	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|529078300|ref|YP_008377303.1|	-	0.001	19.7	1.0	0.001	19.7	1.0	5.0	5	0	0	5	5	5	2	4Fe-4S	single	cluster	domain
Fer4_4	PF12800.7	gi|529078300|ref|YP_008377303.1|	-	0.0014	19.0	1.1	0.0014	19.0	1.1	3.6	4	0	0	4	4	2	2	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|529078300|ref|YP_008377303.1|	-	0.013	16.3	0.4	0.013	16.3	0.4	2.8	2	1	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|529078300|ref|YP_008377303.1|	-	0.015	16.2	6.1	0.015	16.2	6.1	4.0	5	0	0	5	5	3	0	4Fe-4S	binding	domain
Fer2_3	PF13085.6	gi|529078300|ref|YP_008377303.1|	-	0.034	14.2	0.3	0.11	12.5	0.3	1.9	1	0	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_16	PF13484.6	gi|529078300|ref|YP_008377303.1|	-	0.035	15.0	21.1	0.062	14.2	7.6	3.5	3	1	0	3	3	3	0	4Fe-4S	double	cluster	binding	domain
TGS	PF02824.21	gi|529078300|ref|YP_008377303.1|	-	0.041	13.9	0.1	0.6	10.2	0.0	2.7	3	0	0	3	3	2	0	TGS	domain
Fer4_13	PF13370.6	gi|529078300|ref|YP_008377303.1|	-	0.51	10.9	20.3	0.27	11.8	1.4	3.5	3	0	0	3	3	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_18	PF13746.6	gi|529078300|ref|YP_008377303.1|	-	0.54	10.5	16.4	5.5	7.2	7.4	3.0	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
NiFeSe_Hases	PF00374.19	gi|529078301|ref|YP_008377304.1|	-	1.1e-39	136.8	0.0	1.3e-18	67.2	0.0	3.0	2	1	0	3	3	3	3	Nickel-dependent	hydrogenase
HycI	PF01750.18	gi|529078302|ref|YP_008377305.1|	-	5.9e-09	35.8	0.0	7.2e-09	35.6	0.0	1.1	1	0	0	1	1	1	1	Hydrogenase	maturation	protease
DUF2061	PF09834.9	gi|529078305|ref|YP_008377308.1|	-	4.1e-16	59.2	3.7	4.8e-16	59.0	3.7	1.1	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2061)
HrcA_DNA-bdg	PF03444.15	gi|529078306|ref|YP_008377309.1|	-	4.1e-26	90.4	0.0	6.5e-26	89.8	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Rrf2	PF02082.20	gi|529078306|ref|YP_008377309.1|	-	1.2e-07	32.0	0.0	3.7e-07	30.4	0.0	1.8	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_11	PF08279.12	gi|529078306|ref|YP_008377309.1|	-	6.9e-06	25.9	0.0	1.1e-05	25.3	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.19	gi|529078306|ref|YP_008377309.1|	-	0.0022	17.9	0.0	0.0042	16.9	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.19	gi|529078306|ref|YP_008377309.1|	-	0.012	15.8	0.0	0.029	14.6	0.0	1.7	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.7	gi|529078306|ref|YP_008377309.1|	-	0.012	15.4	0.0	0.053	13.4	0.0	2.1	3	0	0	3	3	3	0	MarR	family
HTH_24	PF13412.6	gi|529078306|ref|YP_008377309.1|	-	0.035	13.7	0.0	0.082	12.5	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.6	gi|529078306|ref|YP_008377309.1|	-	0.041	14.4	0.0	0.08	13.5	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|529078306|ref|YP_008377309.1|	-	0.064	13.3	0.0	0.14	12.2	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
Dimerisation2	PF16864.5	gi|529078306|ref|YP_008377309.1|	-	0.12	12.3	0.0	0.18	11.8	0.0	1.3	1	0	0	1	1	1	0	Dimerisation	domain
Epimerase	PF01370.21	gi|529078307|ref|YP_008377310.1|	-	7.6e-22	77.9	2.1	5.9e-15	55.4	0.0	2.5	2	1	0	3	3	3	2	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|529078307|ref|YP_008377310.1|	-	1.6e-11	44.2	0.3	4.5e-09	36.1	0.0	2.2	2	0	0	2	2	2	2	GDP-mannose	4,6	dehydratase
NAD_binding_10	PF13460.6	gi|529078307|ref|YP_008377310.1|	-	1.7e-11	44.4	0.1	1.2e-10	41.6	0.1	2.3	1	1	0	1	1	1	1	NAD(P)H-binding
RmlD_sub_bind	PF04321.17	gi|529078307|ref|YP_008377310.1|	-	3.2e-10	39.6	0.6	7.7e-09	35.1	0.6	2.2	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|529078307|ref|YP_008377310.1|	-	1.7e-06	27.3	0.1	7.7e-05	21.8	0.1	2.1	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NmrA	PF05368.13	gi|529078307|ref|YP_008377310.1|	-	0.0012	18.5	0.0	0.004	16.7	0.0	1.9	2	0	0	2	2	2	1	NmrA-like	family
NAD_binding_4	PF07993.12	gi|529078307|ref|YP_008377310.1|	-	0.017	14.3	0.1	0.046	12.9	0.0	1.7	1	1	1	2	2	2	0	Male	sterility	protein
Glyco_transf_4	PF13439.6	gi|529078307|ref|YP_008377310.1|	-	0.032	14.2	2.0	2.1	8.3	0.4	3.2	1	1	1	2	2	2	0	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|529078307|ref|YP_008377310.1|	-	0.15	12.5	2.5	16	5.9	2.5	2.9	1	1	0	1	1	1	0	Glycosyl	transferase	4-like	domain
GST_N_3	PF13417.6	gi|529078308|ref|YP_008377311.1|	-	5.1e-14	52.4	0.0	5.9e-14	52.2	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
Glutaredoxin	PF00462.24	gi|529078308|ref|YP_008377311.1|	-	1.4e-10	41.2	0.0	2.1e-10	40.6	0.0	1.2	1	0	0	1	1	1	1	Glutaredoxin
GST_N_2	PF13409.6	gi|529078308|ref|YP_008377311.1|	-	2.9e-10	40.3	0.0	3.4e-10	40.1	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_N	PF02798.20	gi|529078308|ref|YP_008377311.1|	-	0.00093	19.5	0.0	0.0013	19.1	0.0	1.2	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
DUF836	PF05768.14	gi|529078308|ref|YP_008377311.1|	-	0.019	15.4	0.1	0.022	15.2	0.1	1.4	1	1	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
UBZ_FAAP20	PF15750.5	gi|529078308|ref|YP_008377311.1|	-	0.16	11.9	0.0	0.28	11.2	0.0	1.3	1	0	0	1	1	1	0	Ubiquitin-binding	zinc-finger
AhpC-TSA	PF00578.21	gi|529078309|ref|YP_008377312.1|	-	4.8e-20	71.7	0.0	5.7e-20	71.5	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|529078309|ref|YP_008377312.1|	-	1.9e-09	37.4	0.0	2.6e-09	36.9	0.0	1.2	1	0	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.6	gi|529078309|ref|YP_008377312.1|	-	0.01	15.9	0.0	0.13	12.4	0.0	2.0	1	1	1	2	2	2	0	AhpC/TSA	antioxidant	enzyme
VIT	PF08487.10	gi|529078310|ref|YP_008377313.1|	-	0.079	13.2	0.0	0.085	13.1	0.0	1.1	1	0	0	1	1	1	0	Vault	protein	inter-alpha-trypsin	domain
Thioredoxin_3	PF13192.6	gi|529078311|ref|YP_008377314.1|	-	2e-19	69.4	0.5	7.2e-14	51.6	0.0	2.8	2	1	0	2	2	2	2	Thioredoxin	domain
Glutaredoxin	PF00462.24	gi|529078311|ref|YP_008377314.1|	-	4.1e-13	49.3	0.0	2.2e-09	37.4	0.0	2.5	2	0	0	2	2	2	2	Glutaredoxin
Thioredoxin_9	PF14595.6	gi|529078311|ref|YP_008377314.1|	-	5.2e-08	32.7	0.0	0.0025	17.6	0.0	2.1	2	0	0	2	2	2	2	Thioredoxin
Thioredoxin_2	PF13098.6	gi|529078311|ref|YP_008377314.1|	-	1.2e-05	25.8	4.6	0.02	15.3	1.8	3.0	2	1	0	2	2	2	2	Thioredoxin-like	domain
Thioredoxin	PF00085.20	gi|529078311|ref|YP_008377314.1|	-	4.7e-05	23.3	0.0	0.00026	20.9	0.0	1.9	2	0	0	2	2	2	1	Thioredoxin
DUF836	PF05768.14	gi|529078311|ref|YP_008377314.1|	-	0.0013	19.1	0.0	0.86	10.1	0.0	2.4	2	0	0	2	2	2	2	Glutaredoxin-like	domain	(DUF836)
ABC_transp_aux	PF09822.9	gi|529078311|ref|YP_008377314.1|	-	0.0039	16.7	0.0	0.91	8.9	0.0	2.2	2	0	0	2	2	2	2	ABC-type	uncharacterized	transport	system
Thioredoxin_4	PF13462.6	gi|529078311|ref|YP_008377314.1|	-	0.014	15.5	3.0	5.4	7.2	0.6	3.0	2	1	1	3	3	3	0	Thioredoxin
DSBA	PF01323.20	gi|529078311|ref|YP_008377314.1|	-	0.021	14.6	0.6	0.038	13.8	0.2	1.7	1	1	0	1	1	1	0	DSBA-like	thioredoxin	domain
TraF	PF13728.6	gi|529078311|ref|YP_008377314.1|	-	0.073	12.9	0.0	2.1	8.1	0.0	2.2	2	0	0	2	2	2	0	F	plasmid	transfer	operon	protein
Glyco_hydro_2_C	PF02836.17	gi|529078312|ref|YP_008377315.1|	-	3.9e-32	111.6	0.0	1.9e-31	109.3	0.0	1.9	1	1	0	1	1	1	1	Glycosyl	hydrolases	family	2,	TIM	barrel	domain
Glyco_hydro2_C5	PF18565.1	gi|529078312|ref|YP_008377315.1|	-	9.3e-32	108.9	1.2	2.3e-31	107.7	1.2	1.7	1	0	0	1	1	1	1	Glycoside	hydrolase	family	2	C-terminal	domain	5
Glyco_hydro_2_N	PF02837.18	gi|529078312|ref|YP_008377315.1|	-	2.7e-18	66.4	0.0	4.7e-18	65.7	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2,	sugar	binding	domain
DUF4982	PF16355.5	gi|529078312|ref|YP_008377315.1|	-	1.8e-15	56.6	0.0	3.8e-15	55.6	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4982)
Glyco_hydro_2	PF00703.21	gi|529078312|ref|YP_008377315.1|	-	5.9e-14	52.7	0.3	2e-13	51.0	0.0	2.0	2	0	0	2	2	2	1	Glycosyl	hydrolases	family	2
Invasin_D3	PF09134.10	gi|529078312|ref|YP_008377315.1|	-	2.9e-05	24.3	0.1	9.6e-05	22.6	0.1	1.9	1	0	0	1	1	1	1	Invasin,	domain	3
Big_1	PF02369.16	gi|529078312|ref|YP_008377315.1|	-	0.01	15.8	1.7	0.27	11.3	0.6	2.9	2	1	0	2	2	2	0	Bacterial	Ig-like	domain	(group	1)
DUF1700	PF08006.11	gi|529078313|ref|YP_008377316.1|	-	0.74	9.3	7.2	0.92	9.0	7.2	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1700)
Cpn60_TCP1	PF00118.24	gi|529078314|ref|YP_008377317.1|	-	9.8e-155	515.9	7.3	1.1e-154	515.7	7.3	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
ABC_tran	PF00005.27	gi|529078315|ref|YP_008377318.1|	-	2.3e-26	92.9	0.0	3.2e-26	92.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|529078315|ref|YP_008377318.1|	-	6.3e-12	45.8	0.2	1.2e-11	44.9	0.2	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_22	PF13401.6	gi|529078315|ref|YP_008377318.1|	-	0.00025	21.3	2.2	0.01	16.1	2.2	2.4	1	1	0	1	1	1	1	AAA	domain
NB-ARC	PF00931.22	gi|529078315|ref|YP_008377318.1|	-	0.017	14.3	0.0	0.025	13.7	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_21	PF13304.6	gi|529078315|ref|YP_008377318.1|	-	0.021	14.7	2.1	0.13	12.1	0.1	2.4	2	1	1	3	3	3	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Yop-YscD_cpl	PF16697.5	gi|529078315|ref|YP_008377318.1|	-	0.033	14.5	0.0	0.092	13.1	0.0	1.7	1	0	0	1	1	1	0	Inner	membrane	component	of	T3SS,	cytoplasmic	domain
AAA_16	PF13191.6	gi|529078315|ref|YP_008377318.1|	-	0.035	14.5	0.2	0.058	13.8	0.2	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_30	PF13604.6	gi|529078315|ref|YP_008377318.1|	-	0.043	13.5	0.0	0.078	12.7	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|529078315|ref|YP_008377318.1|	-	0.056	13.2	0.1	0.096	12.4	0.1	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|529078315|ref|YP_008377318.1|	-	0.066	13.1	0.0	0.11	12.3	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
Rad17	PF03215.15	gi|529078315|ref|YP_008377318.1|	-	0.08	12.9	0.0	0.18	11.7	0.0	1.5	1	0	0	1	1	1	0	Rad17	P-loop	domain
ATPase_2	PF01637.18	gi|529078315|ref|YP_008377318.1|	-	0.13	12.2	0.1	0.25	11.2	0.0	1.5	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
PduV-EutP	PF10662.9	gi|529078315|ref|YP_008377318.1|	-	0.18	11.5	0.0	0.31	10.8	0.0	1.3	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
ABC_tran	PF00005.27	gi|529078316|ref|YP_008377319.1|	-	1.2e-20	74.5	0.0	2e-20	73.7	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|529078316|ref|YP_008377319.1|	-	4.1e-19	68.9	0.1	7.4e-19	68.0	0.1	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|529078316|ref|YP_008377319.1|	-	1e-06	28.8	4.0	2.4e-06	27.6	0.7	2.1	1	1	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|529078316|ref|YP_008377319.1|	-	1.1e-05	25.0	0.2	0.0051	16.3	0.1	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|529078316|ref|YP_008377319.1|	-	0.0012	19.1	0.7	0.044	14.1	0.7	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|529078316|ref|YP_008377319.1|	-	0.0077	15.8	0.0	0.9	9.1	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
TniB	PF05621.11	gi|529078316|ref|YP_008377319.1|	-	0.011	15.2	0.1	0.27	10.6	0.1	2.2	2	0	0	2	2	2	0	Bacterial	TniB	protein
NACHT	PF05729.12	gi|529078316|ref|YP_008377319.1|	-	0.024	14.6	0.0	0.059	13.3	0.0	1.7	1	1	0	1	1	1	0	NACHT	domain
AAA_16	PF13191.6	gi|529078316|ref|YP_008377319.1|	-	0.024	15.0	0.0	0.045	14.1	0.0	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
DUF87	PF01935.17	gi|529078316|ref|YP_008377319.1|	-	0.043	13.9	0.0	0.083	13.0	0.0	1.5	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
AAA_29	PF13555.6	gi|529078316|ref|YP_008377319.1|	-	0.045	13.5	0.0	0.099	12.4	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
PRK	PF00485.18	gi|529078316|ref|YP_008377319.1|	-	0.055	13.2	0.0	0.075	12.8	0.0	1.3	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
ATPase	PF06745.13	gi|529078316|ref|YP_008377319.1|	-	0.11	11.8	0.1	0.28	10.5	0.0	1.6	2	0	0	2	2	2	0	KaiC
AAA_24	PF13479.6	gi|529078316|ref|YP_008377319.1|	-	0.15	11.8	0.1	0.35	10.6	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.22	gi|529078316|ref|YP_008377319.1|	-	0.16	12.3	0.0	0.29	11.6	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
BPD_transp_1	PF00528.22	gi|529078317|ref|YP_008377320.1|	-	2.9e-23	82.6	9.3	4.7e-23	81.9	9.3	1.3	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|529078318|ref|YP_008377321.1|	-	6.8e-31	107.4	14.5	9.7e-31	106.9	14.5	1.2	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF2781	PF10914.8	gi|529078318|ref|YP_008377321.1|	-	0.91	9.9	9.6	0.14	12.6	3.6	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2781)
Cnd1	PF12717.7	gi|529078319|ref|YP_008377322.1|	-	1.4e-20	73.9	0.4	7.3e-07	29.4	0.2	4.1	2	2	2	4	4	4	4	non-SMC	mitotic	condensation	complex	subunit	1
HEAT_2	PF13646.6	gi|529078319|ref|YP_008377322.1|	-	7.1e-17	61.6	39.5	1.6e-05	25.2	7.1	5.3	2	2	2	5	5	5	5	HEAT	repeats
Adaptin_N	PF01602.20	gi|529078319|ref|YP_008377322.1|	-	4.2e-16	58.6	0.3	7.6e-08	31.4	0.1	3.9	2	2	2	4	4	4	4	Adaptin	N	terminal	region
HEAT	PF02985.22	gi|529078319|ref|YP_008377322.1|	-	1.5e-15	55.9	28.3	0.0068	16.6	0.1	8.6	9	0	0	9	9	8	6	HEAT	repeat
HEAT_EZ	PF13513.6	gi|529078319|ref|YP_008377322.1|	-	4e-10	40.0	37.5	0.00016	22.1	2.6	7.7	4	2	5	9	9	8	4	HEAT-like	repeat
Vac14_Fab1_bd	PF12755.7	gi|529078319|ref|YP_008377322.1|	-	1.8e-08	34.8	0.2	0.082	13.5	0.0	5.2	3	2	3	6	6	5	1	Vacuolar	14	Fab1-binding	region
API5	PF05918.11	gi|529078319|ref|YP_008377322.1|	-	0.00015	20.7	6.5	0.0021	17.0	0.7	3.1	2	1	1	3	3	3	1	Apoptosis	inhibitory	protein	5	(API5)
RTP1_C1	PF10363.9	gi|529078319|ref|YP_008377322.1|	-	0.00054	20.1	0.1	3.7	7.8	0.2	3.8	2	2	1	3	3	3	1	Required	for	nuclear	transport	of	RNA	pol	II	C-terminus	1
IFRD	PF05004.13	gi|529078319|ref|YP_008377322.1|	-	0.0035	16.5	2.9	4.5	6.3	0.1	4.3	3	2	3	6	6	6	1	Interferon-related	developmental	regulator	(IFRD)
DNA_alkylation	PF08713.11	gi|529078319|ref|YP_008377322.1|	-	0.0066	16.2	0.1	0.41	10.3	0.0	3.3	2	2	0	2	2	2	1	DNA	alkylation	repair	enzyme
DUF5578	PF17741.1	gi|529078319|ref|YP_008377322.1|	-	0.014	14.8	0.0	0.44	9.9	0.0	2.2	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5578)
CLASP_N	PF12348.8	gi|529078319|ref|YP_008377322.1|	-	0.023	14.3	1.9	50	3.3	0.0	4.5	2	2	3	5	5	5	0	CLASP	N	terminal
Importin_rep_4	PF18808.1	gi|529078319|ref|YP_008377322.1|	-	0.038	14.3	1.3	1.7	9.0	0.1	3.9	4	1	0	4	4	4	0	Importin	repeat
DUF908	PF06012.12	gi|529078319|ref|YP_008377322.1|	-	0.073	12.5	0.0	6.6	6.0	0.0	2.2	2	0	0	2	2	2	0	Domain	of	Unknown	Function	(DUF908)
RIX1	PF08167.12	gi|529078319|ref|YP_008377322.1|	-	0.087	12.6	0.0	17	5.1	0.0	3.0	2	1	1	3	3	3	0	rRNA	processing/ribosome	biogenesis
MMS19_N	PF14500.6	gi|529078319|ref|YP_008377322.1|	-	0.14	11.7	0.2	18	4.8	0.0	3.4	3	1	0	4	4	4	0	Dos2-interacting	transcription	regulator	of	RNA-Pol-II
Barstar	PF01337.18	gi|529078319|ref|YP_008377322.1|	-	0.51	10.4	4.8	2.2	8.4	1.3	2.9	2	0	0	2	2	2	0	Barstar	(barnase	inhibitor)
DUF4042	PF13251.6	gi|529078319|ref|YP_008377322.1|	-	1.6	8.4	5.6	9.4	5.9	0.0	4.0	4	1	1	5	5	5	0	Domain	of	unknown	function	(DUF4042)
Cohesin_HEAT	PF12765.7	gi|529078319|ref|YP_008377322.1|	-	1.8	9.0	22.6	13	6.2	0.2	7.1	7	1	0	7	7	7	0	HEAT	repeat	associated	with	sister	chromatid	cohesion
Arm	PF00514.23	gi|529078319|ref|YP_008377322.1|	-	7.4	6.8	6.3	24	5.1	0.0	4.6	6	1	0	6	6	5	0	Armadillo/beta-catenin-like	repeat
Sacchrp_dh_NADP	PF03435.18	gi|529078323|ref|YP_008377326.1|	-	4.5e-11	43.1	0.2	8.1e-11	42.3	0.2	1.5	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_10	PF13460.6	gi|529078323|ref|YP_008377326.1|	-	1.7e-05	24.8	0.4	0.00011	22.1	0.3	2.1	2	0	0	2	2	2	1	NAD(P)H-binding
UvrB_inter	PF17757.1	gi|529078324|ref|YP_008377327.1|	-	1.9e-32	111.3	0.0	5.7e-32	109.8	0.0	1.9	1	0	0	1	1	1	1	UvrB	interaction	domain
UvrB	PF12344.8	gi|529078324|ref|YP_008377327.1|	-	6.7e-18	64.3	0.3	1.3e-17	63.3	0.3	1.5	1	0	0	1	1	1	1	Ultra-violet	resistance	protein	B
Helicase_C	PF00271.31	gi|529078324|ref|YP_008377327.1|	-	9.7e-16	58.1	0.0	2.1e-15	57.0	0.0	1.6	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
UVR	PF02151.19	gi|529078324|ref|YP_008377327.1|	-	6.4e-10	38.5	7.4	6.4e-10	38.5	7.4	2.6	2	0	0	2	2	2	1	UvrB/uvrC	motif
ResIII	PF04851.15	gi|529078324|ref|YP_008377327.1|	-	2.2e-06	27.8	0.0	1.8e-05	24.8	0.0	2.1	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DUF87	PF01935.17	gi|529078324|ref|YP_008377327.1|	-	0.0046	17.1	1.2	0.056	13.5	0.0	2.9	2	1	1	3	3	3	1	Helicase	HerA,	central	domain
UB2H	PF14814.6	gi|529078324|ref|YP_008377327.1|	-	0.005	16.8	0.0	0.034	14.2	0.0	2.4	3	0	0	3	3	3	1	Bifunctional	transglycosylase	second	domain
DEAD	PF00270.29	gi|529078324|ref|YP_008377327.1|	-	0.0076	16.0	0.0	0.046	13.5	0.0	2.3	3	0	0	3	3	3	1	DEAD/DEAH	box	helicase
AAA_5	PF07728.14	gi|529078324|ref|YP_008377327.1|	-	0.023	14.7	0.1	0.43	10.6	0.0	2.8	2	1	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_19	PF13245.6	gi|529078324|ref|YP_008377327.1|	-	0.086	13.2	0.0	21	5.5	0.0	2.9	3	0	0	3	3	3	0	AAA	domain
AAA_30	PF13604.6	gi|529078324|ref|YP_008377327.1|	-	0.096	12.4	0.1	0.5	10.1	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
Cofilin_ADF	PF00241.20	gi|529078324|ref|YP_008377327.1|	-	0.13	12.1	0.2	0.51	10.2	0.2	2.0	1	0	0	1	1	1	0	Cofilin/tropomyosin-type	actin-binding	protein
DUF2075	PF09848.9	gi|529078324|ref|YP_008377327.1|	-	0.15	11.3	0.0	0.27	10.4	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
Osmo_CC	PF08946.10	gi|529078324|ref|YP_008377327.1|	-	0.22	11.8	2.5	0.4	11.0	0.5	2.6	2	0	0	2	2	2	0	Osmosensory	transporter	coiled	coil
GHMP_kinases_C	PF08544.13	gi|529078325|ref|YP_008377328.1|	-	2.1e-08	34.4	0.1	4.5e-08	33.3	0.0	1.6	2	0	0	2	2	2	1	GHMP	kinases	C	terminal
GHMP_kinases_N	PF00288.26	gi|529078325|ref|YP_008377328.1|	-	0.018	15.2	0.0	0.037	14.3	0.0	1.6	1	0	0	1	1	1	0	GHMP	kinases	N	terminal	domain
DICT	PF10069.9	gi|529078326|ref|YP_008377329.1|	-	1.2e-06	28.3	0.0	2.1e-06	27.5	0.0	1.3	1	0	0	1	1	1	1	Sensory	domain	in	DIguanylate	Cyclases	and	Two-component	system
PAS_3	PF08447.12	gi|529078327|ref|YP_008377330.1|	-	2.5e-39	133.4	0.5	2.7e-23	82.1	0.3	4.6	4	0	0	4	4	4	3	PAS	fold
PAS_4	PF08448.10	gi|529078327|ref|YP_008377330.1|	-	2.8e-38	130.6	19.7	7.5e-17	61.6	0.1	6.3	6	0	0	6	6	6	5	PAS	fold
PAS	PF00989.25	gi|529078327|ref|YP_008377330.1|	-	7.5e-34	116.1	2.3	2e-17	63.2	0.0	5.7	5	1	0	5	5	5	4	PAS	fold
PAS_9	PF13426.7	gi|529078327|ref|YP_008377330.1|	-	9.8e-27	93.2	1.1	8.8e-12	45.2	0.0	5.8	6	0	0	6	6	6	3	PAS	domain
PAS_8	PF13188.7	gi|529078327|ref|YP_008377330.1|	-	4.5e-24	84.0	4.3	5.4e-05	23.1	0.1	5.8	5	0	0	5	5	5	5	PAS	domain
Response_reg	PF00072.24	gi|529078327|ref|YP_008377330.1|	-	1.4e-23	83.2	0.6	2e-21	76.3	0.0	2.9	3	0	0	3	3	3	1	Response	regulator	receiver	domain
HATPase_c	PF02518.26	gi|529078327|ref|YP_008377330.1|	-	3e-20	72.8	0.0	6.7e-20	71.7	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|529078327|ref|YP_008377330.1|	-	2.6e-08	33.9	0.6	1.2e-07	31.8	0.1	2.4	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
PAS_7	PF12860.7	gi|529078327|ref|YP_008377330.1|	-	3.4e-08	33.6	0.2	5e-05	23.4	0.0	4.3	5	0	0	5	5	5	1	PAS	fold
HisKA	PF00512.25	gi|529078327|ref|YP_008377330.1|	-	1.2e-05	25.2	4.1	0.00025	21.0	0.7	3.4	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.6	gi|529078327|ref|YP_008377330.1|	-	0.00032	20.6	0.0	0.0016	18.3	0.0	2.1	2	0	0	2	2	2	1	GHKL	domain
SPOB_a	PF14689.6	gi|529078327|ref|YP_008377330.1|	-	0.0011	18.6	0.3	0.0034	17.1	0.3	1.7	1	0	0	1	1	1	1	Sensor_kinase_SpoOB-type,	alpha-helical	domain
HisKA_4TM	PF16926.5	gi|529078327|ref|YP_008377330.1|	-	0.0042	16.7	0.1	0.0073	15.9	0.1	1.3	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
Methyltransf_24	PF13578.6	gi|529078327|ref|YP_008377330.1|	-	1.7	9.7	3.9	2.3	9.3	0.0	3.3	4	0	0	4	4	3	0	Methyltransferase	domain
ILVD_EDD	PF00920.21	gi|529078328|ref|YP_008377331.1|	-	1.4e-198	660.7	0.2	1.6e-198	660.6	0.2	1.0	1	0	0	1	1	1	1	Dehydratase	family
DGC	PF08859.11	gi|529078328|ref|YP_008377331.1|	-	0.18	11.9	0.2	1.9	8.6	0.0	2.2	2	0	0	2	2	2	0	DGC	domain
MatE	PF01554.18	gi|529078330|ref|YP_008377333.1|	-	2.5e-45	154.0	35.0	7.4e-25	87.5	12.3	2.5	3	0	0	3	3	3	2	MatE
Polysacc_synt_C	PF14667.6	gi|529078330|ref|YP_008377333.1|	-	9.6e-11	41.9	5.8	9.6e-11	41.9	5.8	4.6	2	2	2	4	4	4	1	Polysaccharide	biosynthesis	C-terminal	domain
Sua5_yciO_yrdC	PF01300.18	gi|529078331|ref|YP_008377334.1|	-	3e-46	157.2	0.0	1.3e-45	155.1	0.0	1.9	2	0	0	2	2	2	1	Telomere	recombination
zf-HYPF	PF07503.12	gi|529078331|ref|YP_008377334.1|	-	2.2e-29	100.9	11.0	6.1e-16	57.9	2.5	2.4	2	0	0	2	2	2	2	HypF	finger
HypF_C	PF17788.1	gi|529078331|ref|YP_008377334.1|	-	6.4e-29	100.7	0.1	1.2e-28	99.8	0.1	1.5	1	0	0	1	1	1	1	HypF	Kae1-like	domain
Acylphosphatase	PF00708.18	gi|529078331|ref|YP_008377334.1|	-	2.4e-22	79.1	0.0	4.4e-22	78.3	0.0	1.5	1	0	0	1	1	1	1	Acylphosphatase
DZR	PF12773.7	gi|529078331|ref|YP_008377334.1|	-	0.0019	18.1	3.7	0.23	11.5	0.2	2.3	2	0	0	2	2	2	2	Double	zinc	ribbon
Peptidase_M22	PF00814.25	gi|529078331|ref|YP_008377334.1|	-	0.032	13.9	0.0	0.097	12.4	0.0	1.7	2	0	0	2	2	2	0	Glycoprotease	family
SdiA-regulated	PF06977.11	gi|529078331|ref|YP_008377334.1|	-	0.15	11.2	0.1	0.3	10.3	0.0	1.5	2	0	0	2	2	2	0	SdiA-regulated
Zn-ribbon_8	PF09723.10	gi|529078331|ref|YP_008377334.1|	-	0.36	11.0	6.0	1.2	9.4	1.4	3.1	3	0	0	3	3	3	0	Zinc	ribbon	domain
MFS_1	PF07690.16	gi|529078333|ref|YP_008377336.1|	-	8e-32	110.5	54.0	1.1e-23	83.8	23.7	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_4	PF06779.14	gi|529078333|ref|YP_008377336.1|	-	0.00051	19.4	32.1	0.0021	17.4	32.1	2.4	1	1	0	1	1	1	1	Uncharacterised	MFS-type	transporter	YbfB
MFS_1_like	PF12832.7	gi|529078333|ref|YP_008377336.1|	-	0.00074	18.5	4.1	0.00074	18.5	4.1	3.0	1	1	1	3	3	3	2	MFS_1	like	family
MFS_1	PF07690.16	gi|529078334|ref|YP_008377337.1|	-	5.7e-26	91.3	72.6	1.3e-23	83.6	39.7	1.9	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
cobW	PF02492.19	gi|529078335|ref|YP_008377338.1|	-	1.4e-22	80.1	0.0	2e-22	79.6	0.0	1.2	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
MeaB	PF03308.16	gi|529078335|ref|YP_008377338.1|	-	0.00036	19.6	0.0	0.017	14.1	0.0	2.1	2	0	0	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
DUF87	PF01935.17	gi|529078335|ref|YP_008377338.1|	-	0.0021	18.2	0.0	0.0034	17.5	0.0	1.3	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
RsgA_GTPase	PF03193.16	gi|529078335|ref|YP_008377338.1|	-	0.015	15.2	0.0	2	8.3	0.0	2.3	2	0	0	2	2	2	0	RsgA	GTPase
AAA_16	PF13191.6	gi|529078335|ref|YP_008377338.1|	-	0.038	14.4	0.0	0.071	13.5	0.0	1.5	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|529078335|ref|YP_008377338.1|	-	0.041	14.2	0.0	0.078	13.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|529078335|ref|YP_008377338.1|	-	0.067	13.4	0.0	0.13	12.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
TrwB_AAD_bind	PF10412.9	gi|529078335|ref|YP_008377338.1|	-	0.11	11.4	0.0	0.16	10.9	0.0	1.1	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
HypA	PF01155.19	gi|529078336|ref|YP_008377339.1|	-	5.2e-21	74.8	0.1	5.9e-21	74.6	0.1	1.0	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
AIRS_C	PF02769.22	gi|529078337|ref|YP_008377340.1|	-	1.9e-26	93.1	4.8	3.2e-26	92.3	4.8	1.4	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|529078337|ref|YP_008377340.1|	-	9e-15	55.1	2.6	9e-15	55.1	2.6	2.1	2	0	0	2	2	2	1	AIR	synthase	related	protein,	N-terminal	domain
HypD	PF01924.16	gi|529078338|ref|YP_008377341.1|	-	1.5e-130	435.4	0.0	1.7e-130	435.2	0.0	1.0	1	0	0	1	1	1	1	Hydrogenase	formation	hypA	family
DUF3025	PF11227.8	gi|529078338|ref|YP_008377341.1|	-	0.047	13.5	0.0	0.087	12.6	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3025)
HupF_HypC	PF01455.18	gi|529078339|ref|YP_008377342.1|	-	4.1e-06	26.8	0.0	6.6e-06	26.2	0.0	1.4	1	0	0	1	1	1	1	HupF/HypC	family
DUF1508	PF07411.12	gi|529078341|ref|YP_008377344.1|	-	8.7e-22	76.7	0.3	1e-21	76.5	0.3	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1508)
E1-E2_ATPase	PF00122.20	gi|529078342|ref|YP_008377345.1|	-	3e-50	170.2	6.9	4.4e-49	166.4	5.0	2.7	2	0	0	2	2	2	1	E1-E2	ATPase
Cation_ATPase_C	PF00689.21	gi|529078342|ref|YP_008377345.1|	-	3.5e-38	131.1	9.7	3.5e-38	131.1	9.7	2.2	2	0	0	2	2	2	1	Cation	transporting	ATPase,	C-terminus
Hydrolase	PF00702.26	gi|529078342|ref|YP_008377345.1|	-	2.3e-21	77.0	9.5	1e-20	74.9	9.5	2.2	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Cation_ATPase_N	PF00690.26	gi|529078342|ref|YP_008377345.1|	-	6.2e-20	70.7	0.0	1.3e-19	69.6	0.0	1.6	1	0	0	1	1	1	1	Cation	transporter/ATPase,	N-terminus
Cation_ATPase	PF13246.6	gi|529078342|ref|YP_008377345.1|	-	3.7e-17	62.2	0.0	1.7e-16	60.0	0.0	2.2	2	0	0	2	2	2	1	Cation	transport	ATPase	(P-type)
Hydrolase_3	PF08282.12	gi|529078342|ref|YP_008377345.1|	-	0.00014	21.7	0.1	0.017	14.8	0.3	2.2	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|529078342|ref|YP_008377345.1|	-	0.0012	19.3	0.2	0.0024	18.3	0.2	1.6	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
PHO4	PF01384.20	gi|529078343|ref|YP_008377346.1|	-	2.6e-41	141.8	34.8	6.1e-41	140.6	33.7	2.0	1	1	0	1	1	1	1	Phosphate	transporter	family
Usp	PF00582.26	gi|529078344|ref|YP_008377347.1|	-	2.3e-25	89.7	3.5	2.6e-25	89.6	3.5	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Pilin_N	PF07790.11	gi|529078346|ref|YP_008377349.1|	-	0.00095	20.0	0.1	0.0016	19.3	0.1	1.4	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
TruB_N	PF01509.18	gi|529078348|ref|YP_008377351.1|	-	4.4e-24	85.5	0.1	2.4e-20	73.4	0.1	3.1	1	1	0	1	1	1	1	TruB	family	pseudouridylate	synthase	(N	terminal	domain)
TruB_C_2	PF16198.5	gi|529078348|ref|YP_008377351.1|	-	7.1e-23	80.5	0.2	1.6e-22	79.4	0.2	1.7	1	0	0	1	1	1	1	tRNA	pseudouridylate	synthase	B	C-terminal	domain
DKCLD	PF08068.12	gi|529078348|ref|YP_008377351.1|	-	6.7e-07	29.3	0.0	1.4e-06	28.3	0.0	1.5	1	0	0	1	1	1	1	DKCLD	(NUC011)	domain
PUA	PF01472.20	gi|529078348|ref|YP_008377351.1|	-	2e-05	24.5	0.1	4e-05	23.5	0.1	1.5	1	0	0	1	1	1	1	PUA	domain
Cytidylate_kin2	PF13189.6	gi|529078349|ref|YP_008377352.1|	-	9.3e-21	74.8	1.4	1.3e-18	67.8	1.4	2.0	1	1	0	1	1	1	1	Cytidylate	kinase-like	family
AAA_18	PF13238.6	gi|529078349|ref|YP_008377352.1|	-	1.7e-17	64.2	0.1	2.3e-17	63.8	0.1	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|529078349|ref|YP_008377352.1|	-	1.9e-12	47.8	0.0	2.7e-12	47.3	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
Cytidylate_kin	PF02224.18	gi|529078349|ref|YP_008377352.1|	-	4.3e-12	46.2	2.1	7.9e-07	29.0	0.1	2.1	1	1	0	2	2	2	2	Cytidylate	kinase
AAA_33	PF13671.6	gi|529078349|ref|YP_008377352.1|	-	1.7e-09	38.0	0.1	7.4e-08	32.7	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
SKI	PF01202.22	gi|529078349|ref|YP_008377352.1|	-	2.9e-06	27.5	1.1	2.9e-05	24.3	1.0	2.0	1	1	0	1	1	1	1	Shikimate	kinase
ADK	PF00406.22	gi|529078349|ref|YP_008377352.1|	-	5.5e-05	23.3	0.0	0.00013	22.1	0.0	1.6	1	1	1	2	2	2	1	Adenylate	kinase
AAA_16	PF13191.6	gi|529078349|ref|YP_008377352.1|	-	8.1e-05	23.1	0.4	0.00012	22.6	0.4	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
dNK	PF01712.19	gi|529078349|ref|YP_008377352.1|	-	0.00041	20.3	0.0	0.011	15.7	0.0	2.2	2	0	0	2	2	2	1	Deoxynucleoside	kinase
NACHT	PF05729.12	gi|529078349|ref|YP_008377352.1|	-	0.00044	20.2	0.0	0.00064	19.7	0.0	1.2	1	0	0	1	1	1	1	NACHT	domain
AAA_28	PF13521.6	gi|529078349|ref|YP_008377352.1|	-	0.00045	20.5	0.1	0.0012	19.1	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|529078349|ref|YP_008377352.1|	-	0.0044	16.8	0.5	0.17	11.6	0.1	2.3	1	1	1	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|529078349|ref|YP_008377352.1|	-	0.0045	17.3	0.0	0.0072	16.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
RNA_helicase	PF00910.22	gi|529078349|ref|YP_008377352.1|	-	0.014	15.8	0.0	0.027	14.9	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
AAA_23	PF13476.6	gi|529078349|ref|YP_008377352.1|	-	0.018	15.5	0.0	0.031	14.8	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|529078349|ref|YP_008377352.1|	-	0.031	14.8	0.0	0.038	14.5	0.0	1.5	1	1	0	1	1	1	0	ABC	transporter
AAA_25	PF13481.6	gi|529078349|ref|YP_008377352.1|	-	0.031	13.9	1.1	0.056	13.0	0.8	1.7	1	1	0	1	1	1	0	AAA	domain
CbiA	PF01656.23	gi|529078349|ref|YP_008377352.1|	-	0.035	14.2	0.1	0.072	13.2	0.1	1.5	1	0	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
CoaE	PF01121.20	gi|529078349|ref|YP_008377352.1|	-	0.036	13.7	0.0	0.26	11.0	0.0	1.9	2	0	0	2	2	2	0	Dephospho-CoA	kinase
AAA	PF00004.29	gi|529078349|ref|YP_008377352.1|	-	0.042	14.3	0.0	0.064	13.7	0.0	1.3	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NB-ARC	PF00931.22	gi|529078349|ref|YP_008377352.1|	-	0.05	12.8	0.0	0.075	12.2	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
T2SSE	PF00437.20	gi|529078349|ref|YP_008377352.1|	-	0.057	12.5	0.4	0.081	12.0	0.4	1.4	1	1	0	1	1	1	0	Type	II/IV	secretion	system	protein
ATP_bind_1	PF03029.17	gi|529078349|ref|YP_008377352.1|	-	0.07	12.9	0.0	0.11	12.2	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_29	PF13555.6	gi|529078349|ref|YP_008377352.1|	-	0.079	12.7	0.1	0.14	11.9	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
PRK	PF00485.18	gi|529078349|ref|YP_008377352.1|	-	0.083	12.6	0.1	0.29	10.8	0.0	1.9	1	1	1	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
Ploopntkinase3	PF18751.1	gi|529078349|ref|YP_008377352.1|	-	0.086	12.8	0.0	0.15	12.0	0.0	1.4	1	0	0	1	1	1	0	P-loop	Nucleotide	Kinase3
AAA_5	PF07728.14	gi|529078349|ref|YP_008377352.1|	-	0.1	12.6	0.0	0.17	11.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
DUF2075	PF09848.9	gi|529078349|ref|YP_008377352.1|	-	0.11	11.7	0.0	0.19	10.9	0.0	1.5	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
NTPase_1	PF03266.15	gi|529078349|ref|YP_008377352.1|	-	0.11	12.4	0.0	0.17	11.8	0.0	1.3	1	0	0	1	1	1	0	NTPase
EMC3_TMCO1	PF01956.16	gi|529078350|ref|YP_008377353.1|	-	5.8e-45	153.1	0.5	7.2e-45	152.8	0.5	1.1	1	0	0	1	1	1	1	Integral	membrane	protein	EMC3/TMCO1-like
60KD_IMP	PF02096.20	gi|529078350|ref|YP_008377353.1|	-	1.2e-05	25.3	0.1	1.9e-05	24.6	0.1	1.3	1	0	0	1	1	1	1	60Kd	inner	membrane	protein
DUF4199	PF13858.6	gi|529078350|ref|YP_008377353.1|	-	0.0021	18.5	0.4	0.012	16.1	0.1	2.2	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF4199)
DUF2120	PF09893.9	gi|529078350|ref|YP_008377353.1|	-	0.084	13.0	0.1	0.13	12.3	0.1	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2120)
Wzy_C	PF04932.15	gi|529078350|ref|YP_008377353.1|	-	0.092	12.4	1.4	0.31	10.7	0.1	2.0	1	1	1	2	2	2	0	O-Antigen	ligase
HSCB_C	PF07743.13	gi|529078350|ref|YP_008377353.1|	-	0.51	10.9	9.9	0.062	13.8	3.1	2.4	3	0	0	3	3	3	0	HSCB	C-terminal	oligomerisation	domain
ADK	PF00406.22	gi|529078351|ref|YP_008377354.1|	-	7.2e-44	149.5	0.0	8.6e-44	149.3	0.0	1.1	1	0	0	1	1	1	1	Adenylate	kinase
AAA_17	PF13207.6	gi|529078351|ref|YP_008377354.1|	-	3.5e-21	76.1	0.0	6.3e-21	75.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
ADK_lid	PF05191.14	gi|529078351|ref|YP_008377354.1|	-	8.2e-17	60.9	0.8	1.3e-16	60.2	0.8	1.3	1	0	0	1	1	1	1	Adenylate	kinase,	active	site	lid
AAA_18	PF13238.6	gi|529078351|ref|YP_008377354.1|	-	7e-08	33.1	0.0	1.2e-07	32.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|529078351|ref|YP_008377354.1|	-	0.0001	22.5	0.0	0.00024	21.3	0.0	1.7	2	1	0	2	2	2	1	AAA	domain
DUF3039	PF11238.8	gi|529078351|ref|YP_008377354.1|	-	0.0044	16.8	0.2	0.0081	15.9	0.2	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3039)
NinF	PF05810.12	gi|529078351|ref|YP_008377354.1|	-	0.0077	16.1	0.6	0.021	14.7	0.6	1.7	1	0	0	1	1	1	1	NinF	protein
Ploopntkinase3	PF18751.1	gi|529078351|ref|YP_008377354.1|	-	0.01	15.8	0.0	0.51	10.2	0.0	2.2	2	0	0	2	2	2	0	P-loop	Nucleotide	Kinase3
DUF1451	PF07295.11	gi|529078351|ref|YP_008377354.1|	-	0.02	14.9	0.5	0.02	14.9	0.5	1.8	2	0	0	2	2	2	0	Zinc-ribbon	containing	domain
TF_Zn_Ribbon	PF08271.12	gi|529078351|ref|YP_008377354.1|	-	0.036	13.6	3.8	0.079	12.5	3.8	1.6	1	0	0	1	1	1	0	TFIIB	zinc-binding
PduV-EutP	PF10662.9	gi|529078351|ref|YP_008377354.1|	-	0.069	12.9	0.0	0.13	12.0	0.0	1.4	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
DZR	PF12773.7	gi|529078351|ref|YP_008377354.1|	-	0.069	13.2	1.0	0.42	10.7	1.3	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
HypA	PF01155.19	gi|529078351|ref|YP_008377354.1|	-	0.079	13.0	0.1	0.12	12.4	0.1	1.4	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-C4_Topoisom	PF01396.19	gi|529078351|ref|YP_008377354.1|	-	0.081	12.7	0.6	0.37	10.6	0.0	2.0	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
RuvB_N	PF05496.12	gi|529078351|ref|YP_008377354.1|	-	0.081	12.7	0.1	0.14	11.9	0.0	1.5	1	1	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Zn-ribbon_8	PF09723.10	gi|529078351|ref|YP_008377354.1|	-	0.16	12.1	2.4	0.33	11.1	2.4	1.5	1	0	0	1	1	1	0	Zinc	ribbon	domain
zf_UBZ	PF18439.1	gi|529078351|ref|YP_008377354.1|	-	0.34	10.5	1.1	6.7	6.4	0.1	2.3	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
YhfH	PF14149.6	gi|529078351|ref|YP_008377354.1|	-	2.5	8.2	5.9	13	5.9	0.4	2.3	1	1	1	2	2	2	0	YhfH-like	protein
HisKA	PF00512.25	gi|529078352|ref|YP_008377355.1|	-	1.4e-12	47.4	0.1	4.1e-12	46.0	0.1	1.8	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c	PF02518.26	gi|529078352|ref|YP_008377355.1|	-	3.5e-12	46.8	0.0	8.7e-12	45.5	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.10	gi|529078352|ref|YP_008377355.1|	-	7.2e-10	39.1	0.2	4e-09	36.7	0.0	2.4	2	0	0	2	2	2	1	PAS	fold
DUF1349	PF07081.11	gi|529078352|ref|YP_008377355.1|	-	8.3e-08	32.2	0.2	1.4e-06	28.2	0.0	2.6	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF1349)
GH43_C2	PF17851.1	gi|529078352|ref|YP_008377355.1|	-	0.081	12.6	0.0	0.5	10.1	0.0	2.0	2	0	0	2	2	2	0	Beta	xylosidase	C-terminal	Concanavalin	A-like	domain
PAS_9	PF13426.7	gi|529078352|ref|YP_008377355.1|	-	0.11	12.8	0.0	0.35	11.2	0.0	1.9	2	0	0	2	2	2	0	PAS	domain
ChW	PF07538.11	gi|529078352|ref|YP_008377355.1|	-	0.15	12.0	0.3	0.33	10.9	0.3	1.5	1	0	0	1	1	1	0	Clostridial	hydrophobic	W
URO-D	PF01208.17	gi|529078353|ref|YP_008377356.1|	-	2.1e-107	359.3	0.0	2.3e-107	359.1	0.0	1.0	1	0	0	1	1	1	1	Uroporphyrinogen	decarboxylase	(URO-D)
GST_C_2	PF13410.6	gi|529078353|ref|YP_008377356.1|	-	0.05	13.6	0.8	1.6	8.8	0.1	2.5	2	0	0	2	2	2	0	Glutathione	S-transferase,	C-terminal	domain
Ferrochelatase	PF00762.19	gi|529078354|ref|YP_008377357.1|	-	1.6e-69	234.5	0.0	1.9e-69	234.2	0.0	1.0	1	0	0	1	1	1	1	Ferrochelatase
CbiX	PF01903.17	gi|529078354|ref|YP_008377357.1|	-	1.3e-05	25.4	0.1	0.00028	21.2	0.0	2.4	2	0	0	2	2	2	1	CbiX
Glyco_trans_4_4	PF13579.6	gi|529078354|ref|YP_008377357.1|	-	0.0004	20.9	0.9	0.011	16.2	0.2	2.4	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
SecY	PF00344.20	gi|529078355|ref|YP_008377358.1|	-	8.7e-72	242.0	18.3	8.7e-72	242.0	18.3	1.3	2	0	0	2	2	2	1	SecY	translocase
Plug_translocon	PF10559.9	gi|529078355|ref|YP_008377358.1|	-	3.3e-08	33.2	2.2	9.1e-08	31.8	2.2	1.8	1	0	0	1	1	1	1	Plug	domain	of	Sec61p
Ribosomal_L27A	PF00828.19	gi|529078356|ref|YP_008377359.1|	-	1e-17	65.0	0.1	1.6e-17	64.4	0.1	1.3	1	0	0	1	1	1	1	Ribosomal	proteins	50S-L15,	50S-L18e,	60S-L27A
Ribosomal_L30	PF00327.20	gi|529078357|ref|YP_008377360.1|	-	2.8e-08	33.5	0.0	5.9e-08	32.5	0.0	1.6	2	0	0	2	2	2	1	Ribosomal	protein	L30p/L7e
Ribosomal_S5_C	PF03719.15	gi|529078358|ref|YP_008377361.1|	-	4.2e-24	83.8	0.0	6.5e-24	83.2	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S5,	C-terminal	domain
Ribosomal_S5	PF00333.20	gi|529078358|ref|YP_008377361.1|	-	2.1e-23	82.1	0.4	2.1e-23	82.1	0.4	1.7	2	0	0	2	2	2	1	Ribosomal	protein	S5,	N-terminal	domain
Ribosomal_L5e	PF17144.4	gi|529078359|ref|YP_008377362.1|	-	2.6e-26	92.5	0.0	6.3e-16	58.8	0.0	2.2	1	1	1	2	2	2	2	Ribosomal	large	subunit	proteins	60S	L5,	and	50S	L18
Ribosomal_L18p	PF00861.22	gi|529078359|ref|YP_008377362.1|	-	0.013	15.8	0.0	0.018	15.4	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	L18	of	archaea,	bacteria,	mitoch.	and	chloroplast
DUF4164	PF13747.6	gi|529078359|ref|YP_008377362.1|	-	0.11	12.8	0.3	0.24	11.7	0.3	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4164)
Ribosomal_L19e	PF01280.20	gi|529078360|ref|YP_008377363.1|	-	1.9e-56	190.1	2.1	2.1e-56	190.0	2.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L19e
SHOCT	PF09851.9	gi|529078360|ref|YP_008377363.1|	-	0.00056	19.5	0.9	0.00056	19.5	0.9	2.2	2	0	0	2	2	2	1	Short	C-terminal	domain
Lant_dehydr_C	PF14028.6	gi|529078360|ref|YP_008377363.1|	-	0.036	13.6	0.4	0.036	13.6	0.4	1.1	1	0	0	1	1	1	0	Lantibiotic	biosynthesis	dehydratase	C-term
Dabb	PF07876.12	gi|529078360|ref|YP_008377363.1|	-	0.069	13.8	0.0	0.14	12.8	0.0	1.5	1	0	0	1	1	1	0	Stress	responsive	A/B	Barrel	Domain
CTP_synth_N	PF06418.14	gi|529078360|ref|YP_008377363.1|	-	0.29	10.4	0.8	0.41	9.9	0.8	1.2	1	0	0	1	1	1	0	CTP	synthase	N-terminus
Ribosomal_L32e	PF01655.18	gi|529078361|ref|YP_008377364.1|	-	2.1e-35	121.4	1.2	5.5e-35	120.0	0.8	1.8	2	0	0	2	2	2	1	Ribosomal	protein	L32
HHH_5	PF14520.6	gi|529078361|ref|YP_008377364.1|	-	1.2e-30	105.9	3.9	1.3e-14	54.5	0.4	3.4	3	1	0	3	3	3	2	Helix-hairpin-helix	domain
DNA_pol_lambd_f	PF10391.9	gi|529078361|ref|YP_008377364.1|	-	3.3e-15	55.7	0.0	2.6e-06	27.2	0.0	2.9	2	1	0	2	2	2	2	Fingers	domain	of	DNA	polymerase	lambda
HHH	PF00633.23	gi|529078361|ref|YP_008377364.1|	-	4.5e-14	51.5	6.3	0.0071	16.2	0.1	5.2	5	0	0	5	5	5	4	Helix-hairpin-helix	motif
HHH_2	PF12826.7	gi|529078361|ref|YP_008377364.1|	-	2.1e-13	50.1	5.7	8.5e-06	25.8	0.6	3.7	2	2	2	4	4	4	3	Helix-hairpin-helix	motif
Cdd1	PF11731.8	gi|529078361|ref|YP_008377364.1|	-	1.7e-10	41.0	0.0	0.0044	17.2	0.0	4.2	3	3	3	6	6	5	2	Pathogenicity	locus
HHH_8	PF14716.6	gi|529078361|ref|YP_008377364.1|	-	3.3e-10	40.2	2.3	0.29	11.6	0.0	4.6	3	1	1	4	4	4	3	Helix-hairpin-helix	domain
HHH_3	PF12836.7	gi|529078361|ref|YP_008377364.1|	-	5.8e-10	39.3	0.8	0.17	12.1	0.0	5.3	4	1	0	5	5	5	2	Helix-hairpin-helix	motif
BAF	PF02961.14	gi|529078361|ref|YP_008377364.1|	-	8.8e-07	29.3	1.3	0.87	10.1	0.0	4.4	2	2	2	4	4	4	2	Barrier	to	autointegration	factor
IMS_HHH	PF11798.8	gi|529078361|ref|YP_008377364.1|	-	1.7e-06	28.0	0.0	5.7	7.5	0.0	4.4	4	0	0	4	4	4	1	IMS	family	HHH	motif
LytR_C	PF13399.6	gi|529078361|ref|YP_008377364.1|	-	7.4e-05	23.7	9.8	0.16	12.9	1.9	3.7	3	1	0	3	3	3	2	LytR	cell	envelope-related	transcriptional	attenuator
DUF4332	PF14229.6	gi|529078361|ref|YP_008377364.1|	-	0.00012	22.3	0.1	0.81	9.9	0.0	2.9	3	0	0	3	3	3	2	Domain	of	unknown	function	(DUF4332)
RNA_pol_A_CTD	PF03118.15	gi|529078361|ref|YP_008377364.1|	-	0.00038	20.2	0.0	0.84	9.4	0.0	2.7	2	0	0	2	2	2	2	Bacterial	RNA	polymerase,	alpha	chain	C	terminal	domain
DUF3701	PF12482.8	gi|529078361|ref|YP_008377364.1|	-	0.0056	16.7	0.5	3.9	7.6	0.0	2.8	2	0	0	2	2	2	2	Phage	integrase	protein
Transposase_20	PF02371.16	gi|529078361|ref|YP_008377364.1|	-	0.0086	16.4	0.5	10	6.5	0.0	3.6	4	0	0	4	4	4	1	Transposase	IS116/IS110/IS902	family
Ribosomal_L6	PF00347.23	gi|529078362|ref|YP_008377365.1|	-	8.7e-25	87.2	0.0	6.4e-13	49.2	0.0	2.1	2	0	0	2	2	2	2	Ribosomal	protein	L6
YmcE_antitoxin	PF15939.5	gi|529078362|ref|YP_008377365.1|	-	0.19	11.9	0.0	1.9	8.7	0.0	2.2	2	0	0	2	2	2	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system
Ribosomal_S8	PF00410.19	gi|529078363|ref|YP_008377366.1|	-	1.3e-21	76.8	0.0	1.8e-21	76.4	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S8
Ribosomal_S14	PF00253.21	gi|529078364|ref|YP_008377367.1|	-	3.9e-10	39.3	3.8	4.6e-10	39.1	3.8	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S14p/S29e
DUF4428	PF14471.6	gi|529078364|ref|YP_008377367.1|	-	0.0032	17.4	0.1	0.0041	17.0	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4428)
Ribosomal_L5_C	PF00673.21	gi|529078365|ref|YP_008377368.1|	-	9e-20	70.7	0.0	1.4e-19	70.1	0.0	1.4	1	0	0	1	1	1	1	ribosomal	L5P	family	C-terminus
Ribosomal_L5	PF00281.19	gi|529078365|ref|YP_008377368.1|	-	4.1e-18	65.4	0.0	6.7e-18	64.8	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L5
Ribosomal_S4e	PF00900.20	gi|529078366|ref|YP_008377369.1|	-	5.2e-20	71.1	0.0	9.6e-20	70.3	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	family	S4e
RS4NT	PF08071.12	gi|529078366|ref|YP_008377369.1|	-	1.6e-10	40.9	0.0	2.7e-10	40.2	0.0	1.3	1	0	0	1	1	1	1	RS4NT	(NUC023)	domain
Peptidase_S24	PF00717.23	gi|529078366|ref|YP_008377369.1|	-	0.0061	16.5	0.0	0.019	14.9	0.0	1.9	2	0	0	2	2	2	1	Peptidase	S24-like
KOW	PF00467.29	gi|529078366|ref|YP_008377369.1|	-	0.0066	16.4	1.5	0.01	15.8	0.2	2.2	2	1	0	2	2	2	1	KOW	motif
S4	PF01479.25	gi|529078366|ref|YP_008377369.1|	-	0.0071	16.0	0.0	0.012	15.3	0.0	1.4	1	0	0	1	1	1	1	S4	domain
Autophagy_N	PF03986.13	gi|529078366|ref|YP_008377369.1|	-	5.5	6.9	0.0	5.5	6.9	0.0	2.6	2	1	1	3	3	3	0	Autophagocytosis	associated	protein	(Atg3),	N-terminal	domain
Ribosomal_L26	PF16906.5	gi|529078367|ref|YP_008377370.1|	-	2.6e-19	69.5	0.0	3e-19	69.2	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	proteins	L26	eukaryotic,	L24P	archaeal
KOW	PF00467.29	gi|529078367|ref|YP_008377370.1|	-	1.3e-07	31.3	0.6	3e-07	30.2	0.1	1.8	2	0	0	2	2	2	1	KOW	motif
DUF4162	PF13732.6	gi|529078367|ref|YP_008377370.1|	-	0.018	15.7	0.1	0.032	15.0	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4162)
Ribosomal_L14	PF00238.19	gi|529078368|ref|YP_008377371.1|	-	1.1e-36	125.6	0.1	1.3e-36	125.4	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L14p/L23e
Ribosomal_S17	PF00366.20	gi|529078369|ref|YP_008377372.1|	-	3.9e-26	90.9	0.5	5e-26	90.6	0.5	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S17
Ribosomal_S17_N	PF16205.5	gi|529078369|ref|YP_008377372.1|	-	0.033	14.6	0.0	0.063	13.7	0.0	1.5	1	0	0	1	1	1	0	Ribosomal_S17	N-terminal
DUF1967	PF09269.11	gi|529078369|ref|YP_008377372.1|	-	0.16	11.9	0.2	14	5.7	0.0	2.7	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF1967)
UPF0086	PF01868.16	gi|529078370|ref|YP_008377373.1|	-	1.1e-22	79.7	0.0	1.2e-22	79.6	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	UPF0086
Ribosomal_L29	PF00831.23	gi|529078371|ref|YP_008377374.1|	-	3e-18	65.5	0.4	3.4e-18	65.4	0.4	1.1	1	0	0	1	1	1	1	Ribosomal	L29	protein
Ribosomal_S3_C	PF00189.20	gi|529078372|ref|YP_008377375.1|	-	3.8e-21	75.4	0.5	6.6e-21	74.6	0.5	1.4	1	0	0	1	1	1	1	Ribosomal	protein	S3,	C-terminal	domain
KH_2	PF07650.17	gi|529078372|ref|YP_008377375.1|	-	2e-16	59.5	0.1	5.9e-16	58.1	0.1	1.8	1	0	0	1	1	1	1	KH	domain
KH_1	PF00013.29	gi|529078372|ref|YP_008377375.1|	-	0.0041	16.9	2.7	0.016	15.0	0.4	2.8	3	0	0	3	3	3	1	KH	domain
KH_4	PF13083.6	gi|529078372|ref|YP_008377375.1|	-	0.078	12.9	0.1	0.35	10.8	0.1	2.2	1	0	0	1	1	1	0	KH	domain
Ribosomal_L22	PF00237.19	gi|529078373|ref|YP_008377376.1|	-	1.3e-23	83.2	0.0	1.6e-23	82.9	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L22p/L17e
Ribosomal_S19	PF00203.21	gi|529078374|ref|YP_008377377.1|	-	1.9e-31	107.8	0.0	2.9e-31	107.2	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S19
Citrate_synt	PF00285.21	gi|529078374|ref|YP_008377377.1|	-	0.0086	15.2	0.0	0.0093	15.1	0.0	1.1	1	0	0	1	1	1	1	Citrate	synthase,	C-terminal	domain
MgtE_N	PF03448.17	gi|529078374|ref|YP_008377377.1|	-	0.04	14.5	0.1	0.061	13.9	0.1	1.2	1	0	0	1	1	1	0	MgtE	intracellular	N	domain
Siah-Interact_N	PF09032.11	gi|529078374|ref|YP_008377377.1|	-	0.17	12.2	1.1	0.26	11.6	1.1	1.3	1	0	0	1	1	1	0	Siah	interacting	protein,	N	terminal
Ribosomal_L2_C	PF03947.18	gi|529078375|ref|YP_008377378.1|	-	5.1e-46	156.0	1.2	7.6e-46	155.4	1.2	1.2	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	C-terminal	domain
Ribosomal_L2	PF00181.23	gi|529078375|ref|YP_008377378.1|	-	2.8e-18	65.6	0.0	1.1e-17	63.7	0.0	2.0	2	0	0	2	2	2	1	Ribosomal	Proteins	L2,	RNA	binding	domain
Ribosomal_L23	PF00276.20	gi|529078376|ref|YP_008377379.1|	-	2.1e-15	56.8	2.9	6.9e-15	55.2	2.9	1.7	1	1	0	1	1	1	1	Ribosomal	protein	L23
TusA	PF01206.17	gi|529078376|ref|YP_008377379.1|	-	0.13	12.1	0.3	0.26	11.1	0.3	1.7	1	1	0	1	1	1	0	Sulfurtransferase	TusA
Flagellin_IN	PF07196.13	gi|529078376|ref|YP_008377379.1|	-	0.16	12.2	2.6	0.29	11.4	0.2	2.1	1	1	1	2	2	2	0	Flagellin	hook	IN	motif
Ribosomal_L4	PF00573.22	gi|529078377|ref|YP_008377380.1|	-	7.7e-42	143.2	0.0	8.7e-42	143.0	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L4/L1	family
Ribosomal_L3	PF00297.22	gi|529078378|ref|YP_008377381.1|	-	4e-106	355.1	0.0	9e-106	354.0	0.0	1.5	1	1	0	1	1	1	1	Ribosomal	protein	L3
Methyltrn_RNA_3	PF02598.17	gi|529078379|ref|YP_008377382.1|	-	8.7e-69	232.2	0.0	1e-68	232.0	0.0	1.0	1	0	0	1	1	1	1	Putative	RNA	methyltransferase
GCV_T_C	PF08669.11	gi|529078379|ref|YP_008377382.1|	-	0.017	15.1	0.1	0.53	10.2	0.0	2.9	3	0	0	3	3	3	0	Glycine	cleavage	T-protein	C-terminal	barrel	domain
eIF-1a	PF01176.19	gi|529078379|ref|YP_008377382.1|	-	0.046	13.5	1.2	0.085	12.7	0.7	1.7	2	0	0	2	2	2	0	Translation	initiation	factor	1A	/	IF-1
DUF5325	PF17259.2	gi|529078380|ref|YP_008377383.1|	-	0.067	13.1	2.4	0.15	12.0	2.4	1.6	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5325)
B277	PF17623.2	gi|529078380|ref|YP_008377383.1|	-	0.35	9.9	1.1	0.47	9.5	0.1	1.6	1	1	1	2	2	2	0	Domain	of	unknown	function
FKBP_C	PF00254.28	gi|529078381|ref|YP_008377384.1|	-	1.4e-21	76.6	0.0	2.3e-21	75.9	0.0	1.4	1	1	0	1	1	1	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
Peptidase_S13	PF02113.15	gi|529078381|ref|YP_008377384.1|	-	0.058	12.1	0.0	0.068	11.9	0.0	1.0	1	0	0	1	1	1	0	D-Ala-D-Ala	carboxypeptidase	3	(S13)	family
DUF4968	PF16338.5	gi|529078381|ref|YP_008377384.1|	-	0.1	12.9	0.0	0.19	12.1	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4968)
VirD1	PF07328.11	gi|529078382|ref|YP_008377385.1|	-	0.023	14.7	0.1	0.031	14.2	0.1	1.1	1	0	0	1	1	1	0	T-DNA	border	endonuclease	VirD1
RHH_1	PF01402.21	gi|529078382|ref|YP_008377385.1|	-	0.039	13.9	0.9	0.05	13.6	0.9	1.2	1	0	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
DUF5371	PF17341.2	gi|529078382|ref|YP_008377385.1|	-	0.073	13.3	0.0	0.098	12.9	0.0	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5371)
MR_MLE_C	PF13378.6	gi|529078383|ref|YP_008377386.1|	-	2.9e-59	200.3	1.2	4.5e-59	199.7	1.2	1.3	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|529078383|ref|YP_008377386.1|	-	5.3e-14	52.4	0.0	9.6e-14	51.6	0.0	1.4	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
SHOCT	PF09851.9	gi|529078384|ref|YP_008377387.1|	-	7.2e-06	25.6	0.6	1.1e-05	24.9	0.6	1.3	1	0	0	1	1	1	1	Short	C-terminal	domain
GvpG	PF05120.12	gi|529078384|ref|YP_008377387.1|	-	0.00025	21.0	0.7	0.00041	20.3	0.7	1.4	1	1	0	1	1	1	1	Gas	vesicle	protein	G
Eaf7	PF07904.13	gi|529078384|ref|YP_008377387.1|	-	0.03	14.7	0.0	0.039	14.3	0.0	1.1	1	0	0	1	1	1	0	Chromatin	modification-related	protein	EAF7
BOFC_N	PF08977.10	gi|529078384|ref|YP_008377387.1|	-	0.075	13.0	0.5	0.35	10.9	0.1	2.1	1	1	1	2	2	2	0	Bypass	of	Forespore	C,	N	terminal
Phage_holin_3_6	PF07332.11	gi|529078384|ref|YP_008377387.1|	-	0.077	13.0	4.1	0.13	12.3	4.1	1.3	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF575	PF04746.12	gi|529078384|ref|YP_008377387.1|	-	0.09	13.0	0.2	0.16	12.2	0.2	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF575)
Fzo_mitofusin	PF04799.13	gi|529078384|ref|YP_008377387.1|	-	1.3	8.6	4.9	7.8	6.0	0.1	2.3	1	1	0	2	2	2	0	fzo-like	conserved	region
YqzM	PF14141.6	gi|529078384|ref|YP_008377387.1|	-	2.5	8.2	5.4	4.8	7.3	4.3	2.0	1	1	1	2	2	2	0	YqzM-like	protein
Trypsin_2	PF13365.6	gi|529078385|ref|YP_008377388.1|	-	1.3e-30	107.3	3.5	2.4e-30	106.4	3.5	1.4	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
PDZ_2	PF13180.6	gi|529078385|ref|YP_008377388.1|	-	7.4e-13	48.6	0.1	1.4e-12	47.8	0.1	1.5	1	0	0	1	1	1	1	PDZ	domain
Trypsin	PF00089.26	gi|529078385|ref|YP_008377388.1|	-	1e-11	45.1	2.0	3.3e-11	43.4	2.0	1.7	1	1	0	1	1	1	1	Trypsin
PfkB	PF00294.24	gi|529078386|ref|YP_008377389.1|	-	9.2e-46	156.5	1.8	1.1e-45	156.2	1.8	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Imm70	PF15601.6	gi|529078387|ref|YP_008377390.1|	-	0.0088	15.6	0.0	0.012	15.2	0.0	1.2	1	0	0	1	1	1	1	Immunity	protein	70
MarR_2	PF12802.7	gi|529078388|ref|YP_008377391.1|	-	5e-09	35.9	0.0	9.5e-09	35.0	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|529078388|ref|YP_008377391.1|	-	3.6e-06	26.4	0.0	1.4e-05	24.6	0.0	1.8	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|529078388|ref|YP_008377391.1|	-	4.7e-06	26.6	0.0	9.4e-06	25.6	0.0	1.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|529078388|ref|YP_008377391.1|	-	1.3e-05	24.9	0.1	7.1e-05	22.5	0.0	1.9	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|529078388|ref|YP_008377391.1|	-	3.7e-05	23.5	0.0	6.4e-05	22.7	0.0	1.4	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|529078388|ref|YP_008377391.1|	-	8.3e-05	22.4	0.0	0.00012	21.9	0.0	1.2	1	0	0	1	1	1	1	MarR	family
Fe_dep_repress	PF01325.19	gi|529078388|ref|YP_008377391.1|	-	0.00012	22.2	0.0	0.0002	21.5	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_5	PF01022.20	gi|529078388|ref|YP_008377391.1|	-	0.0017	18.2	0.0	0.0032	17.3	0.0	1.4	1	1	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Penicillinase_R	PF03965.16	gi|529078388|ref|YP_008377391.1|	-	0.024	15.0	0.0	0.03	14.7	0.0	1.2	1	0	0	1	1	1	0	Penicillinase	repressor
PadR	PF03551.14	gi|529078388|ref|YP_008377391.1|	-	0.051	13.5	0.0	0.081	12.9	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Rrf2	PF02082.20	gi|529078388|ref|YP_008377391.1|	-	0.071	13.5	0.0	0.13	12.6	0.0	1.4	2	0	0	2	2	1	0	Transcriptional	regulator
HTH_AsnC-type	PF13404.6	gi|529078388|ref|YP_008377391.1|	-	0.11	12.3	0.0	0.28	11.1	0.0	1.6	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
DUF4423	PF14394.6	gi|529078388|ref|YP_008377391.1|	-	0.14	11.9	0.0	0.16	11.6	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HemN_C	PF06969.16	gi|529078388|ref|YP_008377391.1|	-	0.15	12.2	0.0	7.3	6.7	0.0	2.3	2	0	0	2	2	2	0	HemN	C-terminal	domain
YqaH	PF17448.2	gi|529078389|ref|YP_008377392.1|	-	0.085	13.2	0.0	0.1	12.9	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	YqaH-like
DUF4380	PF14315.6	gi|529078390|ref|YP_008377393.1|	-	0.0015	17.5	0.0	0.0042	16.0	0.0	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4380)
DHDPS	PF00701.22	gi|529078391|ref|YP_008377394.1|	-	7.3e-68	228.4	0.0	8.2e-68	228.2	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
Peripla_BP_6	PF13458.6	gi|529078391|ref|YP_008377394.1|	-	0.064	12.9	3.5	0.18	11.4	2.7	2.1	1	1	0	1	1	1	0	Periplasmic	binding	protein
PEP_mutase	PF13714.6	gi|529078391|ref|YP_008377394.1|	-	0.087	12.3	2.4	0.23	10.9	0.4	2.4	2	1	1	3	3	3	0	Phosphoenolpyruvate	phosphomutase
ATP-grasp_5	PF13549.6	gi|529078393|ref|YP_008377396.1|	-	5.8e-76	254.8	0.6	1.1e-75	253.9	0.6	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
Succ_CoA_lig	PF13607.6	gi|529078393|ref|YP_008377396.1|	-	3.9e-54	182.2	0.7	4.8e-53	178.7	0.1	2.6	3	0	0	3	3	3	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.6	gi|529078393|ref|YP_008377396.1|	-	2.9e-18	66.4	1.3	1.9e-16	60.6	0.0	3.5	3	1	1	4	4	4	1	CoA	binding	domain
CoA_binding	PF02629.19	gi|529078393|ref|YP_008377396.1|	-	1.7e-05	25.4	2.2	4.4e-05	24.1	0.1	2.8	3	1	0	3	3	3	1	CoA	binding	domain
ATP-grasp_2	PF08442.10	gi|529078393|ref|YP_008377396.1|	-	9e-05	22.1	0.5	0.0036	16.9	0.1	2.9	2	1	0	2	2	2	1	ATP-grasp	domain
DMPK_coil	PF08826.10	gi|529078394|ref|YP_008377397.1|	-	1.5	9.0	6.3	9	6.5	0.1	3.0	4	0	0	4	4	4	0	DMPK	coiled	coil	domain	like
MMR_HSR1_C	PF08438.10	gi|529078395|ref|YP_008377398.1|	-	1.2e-30	106.4	0.0	1.8e-30	105.8	0.0	1.3	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.23	gi|529078395|ref|YP_008377398.1|	-	1.1e-19	70.5	0.0	7.6e-19	67.9	0.0	2.2	3	0	0	3	3	3	1	50S	ribosome-binding	GTPase
TGS	PF02824.21	gi|529078395|ref|YP_008377398.1|	-	1e-11	44.7	0.0	2.2e-11	43.6	0.0	1.5	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.18	gi|529078395|ref|YP_008377398.1|	-	9e-08	31.8	0.0	6e-07	29.1	0.0	2.3	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
MMR_HSR1_Xtn	PF16897.5	gi|529078395|ref|YP_008377398.1|	-	0.11	12.6	0.0	0.22	11.6	0.0	1.5	1	0	0	1	1	1	0	C-terminal	region	of	MMR_HSR1	domain
NOG1	PF06858.14	gi|529078395|ref|YP_008377398.1|	-	0.13	12.1	0.0	2.7	7.8	0.0	2.4	2	0	0	2	2	2	0	Nucleolar	GTP-binding	protein	1	(NOG1)
GFO_IDH_MocA	PF01408.22	gi|529078396|ref|YP_008377399.1|	-	1e-24	87.6	0.1	2e-24	86.7	0.1	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|529078396|ref|YP_008377399.1|	-	5.9e-09	35.9	0.0	1.1e-08	35.0	0.0	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
DEAD	PF00270.29	gi|529078398|ref|YP_008377401.1|	-	1.3e-23	83.7	0.0	1.9e-23	83.2	0.0	1.2	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
DUF1998	PF09369.10	gi|529078398|ref|YP_008377401.1|	-	1.8e-23	83.1	0.2	5.5e-23	81.5	0.2	1.9	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1998)
Helicase_C	PF00271.31	gi|529078398|ref|YP_008377401.1|	-	1.9e-09	37.9	0.0	1.2e-08	35.3	0.0	2.2	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
EccE	PF11203.8	gi|529078398|ref|YP_008377401.1|	-	0.73	10.2	3.8	8.4	6.8	0.6	3.0	2	0	0	2	2	2	0	Putative	type	VII	ESX	secretion	system	translocon,	EccE
DUF2403	PF10290.9	gi|529078399|ref|YP_008377402.1|	-	0.41	11.1	2.6	0.25	11.8	0.4	1.7	1	1	1	2	2	2	0	Glycine-rich	protein	domain	(DUF2403)
HTH_10	PF04967.12	gi|529078400|ref|YP_008377403.1|	-	5.3e-16	58.2	0.2	7.8e-16	57.6	0.2	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|529078400|ref|YP_008377403.1|	-	2.2e-11	43.9	1.1	3.5e-11	43.2	1.1	1.3	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
HTH_DeoR	PF08220.12	gi|529078400|ref|YP_008377403.1|	-	0.065	13.0	0.1	0.13	12.0	0.1	1.5	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
MarR_2	PF12802.7	gi|529078400|ref|YP_008377403.1|	-	0.075	12.9	0.0	0.17	11.8	0.0	1.7	1	0	0	1	1	1	0	MarR	family
HTH_24	PF13412.6	gi|529078400|ref|YP_008377403.1|	-	0.093	12.3	0.0	0.16	11.5	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|529078400|ref|YP_008377403.1|	-	0.12	12.2	0.2	0.27	11.1	0.2	1.5	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
adh_short	PF00106.25	gi|529078403|ref|YP_008377406.1|	-	1.5e-46	158.3	0.2	1.9e-46	158.0	0.2	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|529078403|ref|YP_008377406.1|	-	1.1e-45	156.0	0.1	1.3e-45	155.8	0.1	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
Epimerase	PF01370.21	gi|529078403|ref|YP_008377406.1|	-	2.7e-06	27.0	0.1	3.8e-06	26.6	0.1	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
KR	PF08659.10	gi|529078403|ref|YP_008377406.1|	-	8.6e-06	25.8	4.1	0.00011	22.2	4.1	2.0	1	1	0	1	1	1	1	KR	domain
Sacchrp_dh_NADP	PF03435.18	gi|529078403|ref|YP_008377406.1|	-	0.0021	18.3	0.4	0.0034	17.7	0.4	1.3	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
3HCDH_N	PF02737.18	gi|529078403|ref|YP_008377406.1|	-	0.01	15.7	0.3	0.014	15.3	0.3	1.2	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.18	gi|529078403|ref|YP_008377406.1|	-	0.015	15.6	0.8	0.031	14.5	0.8	1.5	1	0	0	1	1	1	0	TrkA-N	domain
Methyltransf_25	PF13649.6	gi|529078403|ref|YP_008377406.1|	-	0.03	15.0	0.2	0.06	14.1	0.2	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
Polysacc_synt_2	PF02719.15	gi|529078403|ref|YP_008377406.1|	-	0.043	12.9	0.0	0.062	12.4	0.0	1.2	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	protein
GDP_Man_Dehyd	PF16363.5	gi|529078403|ref|YP_008377406.1|	-	0.059	12.8	0.1	0.09	12.2	0.1	1.3	1	0	0	1	1	1	0	GDP-mannose	4,6	dehydratase
CBP_BcsQ	PF06564.12	gi|529078403|ref|YP_008377406.1|	-	0.065	12.7	0.0	0.13	11.8	0.0	1.4	1	0	0	1	1	1	0	Cellulose	biosynthesis	protein	BcsQ
CbiA	PF01656.23	gi|529078403|ref|YP_008377406.1|	-	0.083	12.9	0.0	0.096	12.7	0.0	1.3	1	0	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
VCBS	PF13517.6	gi|529078403|ref|YP_008377406.1|	-	0.088	13.4	2.0	0.95	10.1	0.0	3.2	3	1	0	3	3	3	0	Repeat	domain	in	Vibrio,	Colwellia,	Bradyrhizobium	and	Shewanella
AAA_31	PF13614.6	gi|529078403|ref|YP_008377406.1|	-	0.12	12.2	0.0	0.2	11.6	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
Glyco_transf_4	PF13439.6	gi|529078403|ref|YP_008377406.1|	-	0.19	11.7	0.0	0.3	11.1	0.0	1.3	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
MTS	PF05175.14	gi|529078403|ref|YP_008377406.1|	-	0.2	11.2	0.8	0.31	10.6	0.8	1.3	1	0	0	1	1	1	0	Methyltransferase	small	domain
N6_Mtase	PF02384.16	gi|529078404|ref|YP_008377407.1|	-	3e-15	56.3	0.0	2.5e-10	40.1	0.0	2.2	2	0	0	2	2	2	2	N-6	DNA	Methylase
Eco57I	PF07669.11	gi|529078404|ref|YP_008377407.1|	-	2.3e-13	50.6	0.0	5.2e-13	49.4	0.0	1.6	1	0	0	1	1	1	1	Eco57I	restriction-modification	methylase
TaqI_C	PF12950.7	gi|529078404|ref|YP_008377407.1|	-	5.8e-12	45.7	0.0	1.2e-11	44.7	0.0	1.6	1	0	0	1	1	1	1	TaqI-like	C-terminal	specificity	domain
HSDR_N_2	PF13588.6	gi|529078404|ref|YP_008377407.1|	-	5.1e-06	26.5	0.0	1.4e-05	25.1	0.0	1.7	1	0	0	1	1	1	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
HSDR_N	PF04313.14	gi|529078404|ref|YP_008377407.1|	-	1.2e-05	25.3	0.0	2.6e-05	24.2	0.0	1.5	1	0	0	1	1	1	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
UPF0020	PF01170.18	gi|529078404|ref|YP_008377407.1|	-	1.7e-05	24.6	0.0	0.0013	18.4	0.0	2.4	2	0	0	2	2	2	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_31	PF13847.6	gi|529078404|ref|YP_008377407.1|	-	0.029	14.2	0.0	0.082	12.7	0.0	1.7	1	0	0	1	1	1	0	Methyltransferase	domain
Tox-REase-9	PF15650.6	gi|529078404|ref|YP_008377407.1|	-	0.046	14.0	0.0	0.11	12.8	0.0	1.6	1	0	0	1	1	1	0	Restriction	endonuclease	fold	toxin	9
Cons_hypoth95	PF03602.15	gi|529078404|ref|YP_008377407.1|	-	0.053	13.2	0.0	2.9	7.5	0.0	2.6	2	0	0	2	2	2	0	Conserved	hypothetical	protein	95
Cas_Cas4	PF01930.17	gi|529078404|ref|YP_008377407.1|	-	0.21	11.7	0.0	0.61	10.2	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF83
HSDR_N_2	PF13588.6	gi|529078405|ref|YP_008377408.1|	-	4.2e-11	42.8	0.0	7.4e-11	42.0	0.0	1.4	1	0	0	1	1	1	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
HSDR_N	PF04313.14	gi|529078405|ref|YP_008377408.1|	-	2.1e-07	31.1	0.1	9.1e-06	25.7	0.0	2.7	2	1	1	3	3	3	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
PSK_trans_fac	PF07704.11	gi|529078405|ref|YP_008377408.1|	-	0.086	13.6	1.6	0.25	12.2	1.6	1.8	1	0	0	1	1	1	0	Rv0623-like	transcription	factor
FliT	PF05400.13	gi|529078405|ref|YP_008377408.1|	-	7.9	7.4	8.2	45	4.9	0.1	3.2	3	1	0	3	3	3	0	Flagellar	protein	FliT
SHOCT	PF09851.9	gi|529078407|ref|YP_008377410.1|	-	2.3e-07	30.3	7.2	4.2e-07	29.5	7.2	1.5	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.11	gi|529078407|ref|YP_008377410.1|	-	9.6e-05	22.4	1.3	0.00029	20.8	1.3	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
CdvA	PF18822.1	gi|529078407|ref|YP_008377410.1|	-	0.023	14.5	1.0	0.088	12.6	1.0	1.7	1	1	1	2	2	2	0	CdvA-like	coiled-coil	domain
OrfB_IS605	PF01385.19	gi|529078409|ref|YP_008377412.1|	-	2.1e-31	108.6	0.1	4e-31	107.7	0.1	1.5	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|529078409|ref|YP_008377412.1|	-	6.6e-20	70.8	0.2	1.3e-19	69.9	0.2	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
FxsA	PF04186.13	gi|529078410|ref|YP_008377413.1|	-	6.7e-35	119.5	9.7	9e-35	119.1	9.7	1.1	1	0	0	1	1	1	1	FxsA	cytoplasmic	membrane	protein
TMEM171	PF15471.6	gi|529078410|ref|YP_008377413.1|	-	0.12	11.4	0.2	0.15	11.0	0.2	1.1	1	0	0	1	1	1	0	Transmembrane	protein	family	171
RseC_MucC	PF04246.12	gi|529078410|ref|YP_008377413.1|	-	3.1	7.7	4.7	5.9	6.9	4.7	1.4	1	0	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
GCHY-1	PF02649.14	gi|529078411|ref|YP_008377414.1|	-	1.8e-74	250.5	0.2	2.1e-74	250.3	0.2	1.0	1	0	0	1	1	1	1	Type	I	GTP	cyclohydrolase	folE2
Limkain-b1	PF11608.8	gi|529078411|ref|YP_008377414.1|	-	0.00082	19.4	0.0	0.0018	18.3	0.0	1.6	1	0	0	1	1	1	1	Limkain	b1
REF	PF05755.12	gi|529078411|ref|YP_008377414.1|	-	0.18	11.6	0.0	0.3	10.9	0.0	1.3	1	0	0	1	1	1	0	Rubber	elongation	factor	protein	(REF)
Methyltransf_11	PF08241.12	gi|529078412|ref|YP_008377415.1|	-	1e-23	83.8	0.1	2.6e-23	82.5	0.0	1.7	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|529078412|ref|YP_008377415.1|	-	2.6e-21	76.1	0.1	7.6e-21	74.6	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|529078412|ref|YP_008377415.1|	-	1.3e-18	67.3	0.0	1.6e-18	67.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|529078412|ref|YP_008377415.1|	-	7.8e-14	51.8	0.0	1e-13	51.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|529078412|ref|YP_008377415.1|	-	2.7e-11	43.3	0.0	5.1e-11	42.4	0.0	1.4	1	1	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|529078412|ref|YP_008377415.1|	-	5.9e-10	39.8	0.0	1.1e-09	39.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_9	PF08003.11	gi|529078412|ref|YP_008377415.1|	-	6.8e-08	31.8	0.0	8.6e-08	31.5	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
PCMT	PF01135.19	gi|529078412|ref|YP_008377415.1|	-	0.00031	20.6	0.0	0.00041	20.2	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_8	PF05148.15	gi|529078412|ref|YP_008377415.1|	-	0.0048	16.8	0.0	0.042	13.7	0.0	2.0	1	1	0	1	1	1	1	Hypothetical	methyltransferase
Methyltransf_32	PF13679.6	gi|529078412|ref|YP_008377415.1|	-	0.0049	16.9	0.0	0.007	16.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.20	gi|529078412|ref|YP_008377415.1|	-	0.0053	16.1	0.0	0.007	15.7	0.0	1.3	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_2	PF00891.18	gi|529078412|ref|YP_008377415.1|	-	0.0055	16.0	0.0	0.007	15.7	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase	domain
GCD14	PF08704.10	gi|529078412|ref|YP_008377415.1|	-	0.0077	15.9	0.0	0.01	15.5	0.0	1.2	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
N6_N4_Mtase	PF01555.18	gi|529078412|ref|YP_008377415.1|	-	0.011	15.5	0.0	0.73	9.5	0.0	2.1	2	0	0	2	2	2	0	DNA	methylase
MetW	PF07021.12	gi|529078412|ref|YP_008377415.1|	-	0.038	13.6	0.0	0.061	12.9	0.0	1.3	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
MTS	PF05175.14	gi|529078412|ref|YP_008377415.1|	-	0.04	13.5	0.0	0.076	12.6	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	small	domain
PrmA	PF06325.13	gi|529078412|ref|YP_008377415.1|	-	0.045	13.1	0.1	0.073	12.5	0.1	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
NNMT_PNMT_TEMT	PF01234.17	gi|529078412|ref|YP_008377415.1|	-	0.18	11.0	0.0	0.74	8.9	0.0	1.8	2	0	0	2	2	2	0	NNMT/PNMT/TEMT	family
Methyltransf_18	PF12847.7	gi|529078412|ref|YP_008377415.1|	-	0.24	11.3	0.0	0.48	10.3	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
ABC_tran	PF00005.27	gi|529078413|ref|YP_008377416.1|	-	2.8e-33	115.3	0.0	4.6e-33	114.6	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529078413|ref|YP_008377416.1|	-	2.9e-07	30.6	0.0	0.023	14.5	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|529078413|ref|YP_008377416.1|	-	0.00023	20.8	0.1	0.00053	19.7	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF4162	PF13732.6	gi|529078413|ref|YP_008377416.1|	-	0.00037	21.2	0.0	0.00086	20.0	0.0	1.7	2	0	0	2	2	1	1	Domain	of	unknown	function	(DUF4162)
AAA_23	PF13476.6	gi|529078413|ref|YP_008377416.1|	-	0.00041	20.9	0.0	0.0011	19.5	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|529078413|ref|YP_008377416.1|	-	0.0084	16.0	0.0	0.018	15.0	0.0	1.5	1	0	0	1	1	1	1	RsgA	GTPase
AAA_16	PF13191.6	gi|529078413|ref|YP_008377416.1|	-	0.024	15.0	0.2	0.048	14.0	0.0	1.7	2	1	0	2	2	2	0	AAA	ATPase	domain
AAA_15	PF13175.6	gi|529078413|ref|YP_008377416.1|	-	0.026	14.3	0.0	0.28	10.9	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
cobW	PF02492.19	gi|529078413|ref|YP_008377416.1|	-	0.038	13.6	0.3	0.079	12.5	0.1	1.6	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_24	PF13479.6	gi|529078413|ref|YP_008377416.1|	-	0.053	13.2	0.0	0.1	12.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|529078413|ref|YP_008377416.1|	-	0.055	13.6	0.1	0.48	10.5	0.0	2.6	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_22	PF13401.6	gi|529078413|ref|YP_008377416.1|	-	0.056	13.7	0.0	0.32	11.3	0.0	2.2	1	1	0	1	1	1	0	AAA	domain
MobB	PF03205.14	gi|529078413|ref|YP_008377416.1|	-	0.078	12.9	0.1	0.22	11.4	0.0	1.8	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
SRP54	PF00448.22	gi|529078413|ref|YP_008377416.1|	-	0.081	12.5	0.0	0.16	11.5	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA	PF00004.29	gi|529078413|ref|YP_008377416.1|	-	0.1	13.0	0.0	0.55	10.7	0.0	2.1	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sucrose_synth	PF00862.19	gi|529078413|ref|YP_008377416.1|	-	0.12	10.6	0.0	0.17	10.1	0.0	1.1	1	0	0	1	1	1	0	Sucrose	synthase
Mg_chelatase	PF01078.21	gi|529078413|ref|YP_008377416.1|	-	0.15	11.4	0.0	0.31	10.4	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
ABC2_membrane	PF01061.24	gi|529078414|ref|YP_008377417.1|	-	2.2e-39	135.1	16.3	2.8e-39	134.7	16.3	1.1	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|529078414|ref|YP_008377417.1|	-	8.3e-20	71.2	20.7	8.3e-20	71.2	20.7	1.7	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|529078414|ref|YP_008377417.1|	-	1.4e-08	34.4	21.6	2.5e-08	33.6	21.6	1.5	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|529078414|ref|YP_008377417.1|	-	0.056	13.0	12.1	0.14	11.7	12.1	1.7	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|529078414|ref|YP_008377417.1|	-	0.23	11.4	14.8	0.078	12.9	10.7	2.2	2	1	0	2	2	2	0	ABC-2	family	transporter	protein
GIY-YIG	PF01541.24	gi|529078415|ref|YP_008377418.1|	-	2.7e-19	69.2	0.0	3.2e-19	69.0	0.0	1.0	1	0	0	1	1	1	1	GIY-YIG	catalytic	domain
T5orf172	PF10544.9	gi|529078415|ref|YP_008377418.1|	-	0.08	13.5	0.0	0.09	13.3	0.0	1.2	1	0	0	1	1	1	0	T5orf172	domain
Lar_restr_allev	PF14354.6	gi|529078416|ref|YP_008377419.1|	-	0.0074	16.6	0.7	1.5	9.2	0.0	2.1	2	0	0	2	2	2	2	Restriction	alleviation	protein	Lar
Zn-ribbon_8	PF09723.10	gi|529078416|ref|YP_008377419.1|	-	0.0075	16.4	3.9	0.031	14.4	3.6	1.9	1	1	0	1	1	1	1	Zinc	ribbon	domain
DZR	PF12773.7	gi|529078416|ref|YP_008377419.1|	-	0.0079	16.2	0.5	0.01	15.9	0.5	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|529078416|ref|YP_008377419.1|	-	0.0093	15.3	1.9	0.27	10.7	0.1	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|529078416|ref|YP_008377419.1|	-	0.014	15.3	1.0	0.037	14.0	1.0	1.7	1	1	0	1	1	1	0	Nudix	N-terminal
HypA	PF01155.19	gi|529078416|ref|YP_008377419.1|	-	0.12	12.4	0.4	0.13	12.3	0.4	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn_Tnp_IS1595	PF12760.7	gi|529078416|ref|YP_008377419.1|	-	0.76	9.8	4.8	1.3	9.0	0.3	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-RRN7	PF11781.8	gi|529078416|ref|YP_008377419.1|	-	1.7	8.4	5.4	8.9	6.1	0.6	2.2	1	1	1	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
AIRC	PF00731.20	gi|529078417|ref|YP_008377420.1|	-	8.1e-13	48.2	2.5	8.1e-13	48.2	2.5	1.7	2	0	0	2	2	2	1	AIR	carboxylase
DUF1931	PF09123.11	gi|529078418|ref|YP_008377421.1|	-	0.0011	19.0	1.1	0.0013	18.9	1.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1931)
CBFD_NFYB_HMF	PF00808.23	gi|529078418|ref|YP_008377421.1|	-	0.003	17.8	0.1	0.0037	17.5	0.1	1.4	1	1	0	1	1	1	1	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
Histone	PF00125.24	gi|529078418|ref|YP_008377421.1|	-	0.015	15.6	0.1	0.015	15.6	0.1	1.1	1	0	0	1	1	1	0	Core	histone	H2A/H2B/H3/H4
CP12	PF02672.15	gi|529078418|ref|YP_008377421.1|	-	0.049	14.4	0.4	0.059	14.1	0.4	1.2	1	0	0	1	1	1	0	CP12	domain
DUF2270	PF10028.9	gi|529078419|ref|YP_008377422.1|	-	1.7e-73	246.1	1.1	2e-73	245.9	1.1	1.0	1	0	0	1	1	1	1	Predicted	integral	membrane	protein	(DUF2270)
PGM_PMM_I	PF02878.16	gi|529078420|ref|YP_008377423.1|	-	2.3e-32	111.6	0.0	3.8e-32	110.9	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_III	PF02880.16	gi|529078420|ref|YP_008377423.1|	-	3.4e-19	69.1	0.0	7.1e-19	68.1	0.0	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_II	PF02879.16	gi|529078420|ref|YP_008377423.1|	-	5.5e-16	59.1	0.1	1.2e-15	57.9	0.1	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_IV	PF00408.20	gi|529078420|ref|YP_008377423.1|	-	8.9e-13	48.2	0.3	4.2e-12	46.0	0.3	2.2	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
ATPase	PF06745.13	gi|529078421|ref|YP_008377424.1|	-	0.00039	19.8	0.2	0.0005	19.5	0.2	1.1	1	0	0	1	1	1	1	KaiC
PAXNEB	PF05625.11	gi|529078421|ref|YP_008377424.1|	-	0.067	12.3	0.0	0.089	11.9	0.0	1.1	1	0	0	1	1	1	0	PAXNEB	protein
DUF2391	PF09622.10	gi|529078422|ref|YP_008377425.1|	-	5.9e-05	22.5	1.6	7.9e-05	22.1	1.6	1.2	1	0	0	1	1	1	1	Putative	integral	membrane	protein	(DUF2391)
PIG-F	PF06699.11	gi|529078422|ref|YP_008377425.1|	-	0.027	14.6	0.1	0.033	14.3	0.1	1.2	1	0	0	1	1	1	0	GPI	biosynthesis	protein	family	Pig-F
tRNA_NucTransf2	PF09249.11	gi|529078423|ref|YP_008377426.1|	-	1.8e-44	150.6	0.0	3.1e-44	149.8	0.0	1.4	1	0	0	1	1	1	1	tRNA	nucleotidyltransferase,	second	domain
NTP_transf_2	PF01909.23	gi|529078423|ref|YP_008377426.1|	-	1.4e-15	57.3	0.0	3.8e-15	56.0	0.0	1.7	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
SMODS	PF18144.1	gi|529078423|ref|YP_008377426.1|	-	0.00085	19.5	0.0	0.0034	17.6	0.0	1.9	1	1	0	1	1	1	1	Second	Messenger	Oligonucleotide	or	Dinucleotide	Synthetase	domain
Hist_deacetyl	PF00850.19	gi|529078424|ref|YP_008377427.1|	-	3.9e-77	259.8	0.0	5.4e-77	259.3	0.0	1.2	1	0	0	1	1	1	1	Histone	deacetylase	domain
CBFD_NFYB_HMF	PF00808.23	gi|529078425|ref|YP_008377428.1|	-	2e-17	63.2	1.9	6.1e-12	45.6	0.3	2.0	2	0	0	2	2	2	2	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
Histone	PF00125.24	gi|529078425|ref|YP_008377428.1|	-	5.8e-10	39.6	2.8	1.1e-06	29.1	0.3	2.0	2	0	0	2	2	2	2	Core	histone	H2A/H2B/H3/H4
CENP-T_C	PF15511.6	gi|529078425|ref|YP_008377428.1|	-	0.00021	21.4	0.3	0.015	15.5	0.1	2.1	2	0	0	2	2	2	1	Centromere	kinetochore	component	CENP-T	histone	fold
CENP-S	PF15630.6	gi|529078425|ref|YP_008377428.1|	-	0.001	19.4	0.8	0.0049	17.2	0.2	1.9	2	0	0	2	2	2	1	CENP-S	protein
DRY_EERY	PF09750.9	gi|529078425|ref|YP_008377428.1|	-	0.059	13.6	0.1	0.46	10.8	0.1	2.0	1	1	0	1	1	1	0	Alternative	splicing	regulator
LptE	PF04390.12	gi|529078425|ref|YP_008377428.1|	-	0.082	13.6	0.7	0.12	13.0	0.7	1.4	1	1	0	1	1	1	0	Lipopolysaccharide-assembly
tRNA_anti-codon	PF01336.25	gi|529078426|ref|YP_008377429.1|	-	5.8e-28	96.7	14.1	1.3e-11	44.3	0.9	4.0	4	0	0	4	4	4	3	OB-fold	nucleic	acid	binding	domain
REPA_OB_2	PF16900.5	gi|529078426|ref|YP_008377429.1|	-	4.2e-15	55.4	3.2	6.3e-07	29.2	0.2	3.4	3	0	0	3	3	3	3	Replication	protein	A	OB	domain
CDC24_OB3	PF17244.2	gi|529078426|ref|YP_008377429.1|	-	8e-09	35.5	0.1	0.047	13.4	0.0	3.1	3	0	0	3	3	3	3	Cell	division	control	protein	24,	OB	domain	3
Rep_fac-A_C	PF08646.10	gi|529078426|ref|YP_008377429.1|	-	0.024	14.4	0.0	6.4	6.5	0.0	3.3	3	0	0	3	3	3	0	Replication	factor-A	C	terminal	domain
DUF4131	PF13567.6	gi|529078426|ref|YP_008377429.1|	-	0.22	11.2	1.2	25	4.5	0.0	3.4	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF4131)
TAT_signal	PF10518.9	gi|529078427|ref|YP_008377430.1|	-	6.1e-05	22.7	1.0	0.00011	21.9	1.0	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF1180	PF06679.12	gi|529078427|ref|YP_008377430.1|	-	1.5	9.2	3.7	2.3	8.6	3.7	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1180)
Phosphodiest	PF01663.22	gi|529078428|ref|YP_008377431.1|	-	1.7e-36	126.6	0.1	4.7e-36	125.1	0.1	1.6	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Glycos_transf_2	PF00535.26	gi|529078429|ref|YP_008377432.1|	-	3.3e-24	85.6	0.1	4.5e-24	85.2	0.1	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|529078429|ref|YP_008377432.1|	-	8.5e-10	38.9	0.6	2.4e-09	37.4	0.6	1.7	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|529078429|ref|YP_008377432.1|	-	0.0015	19.0	0.0	0.0091	16.5	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
NTP_transf_3	PF12804.7	gi|529078429|ref|YP_008377432.1|	-	0.051	13.9	0.3	0.074	13.4	0.3	1.6	1	1	0	1	1	1	0	MobA-like	NTP	transferase	domain
DUF2304	PF10066.9	gi|529078430|ref|YP_008377433.1|	-	2.2e-19	69.7	2.9	2.4e-19	69.5	2.9	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2304)
DUF2976	PF11190.8	gi|529078430|ref|YP_008377433.1|	-	0.87	9.4	4.7	0.43	10.4	0.8	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2976)
DUF3473	PF11959.8	gi|529078431|ref|YP_008377434.1|	-	2.9e-24	85.5	0.0	3.9e-24	85.2	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3473)
Polysacc_deac_1	PF01522.21	gi|529078431|ref|YP_008377434.1|	-	8.6e-24	83.8	0.0	1.2e-23	83.3	0.0	1.2	1	0	0	1	1	1	1	Polysaccharide	deacetylase
DUF2334	PF10096.9	gi|529078431|ref|YP_008377434.1|	-	0.041	13.5	0.0	0.074	12.7	0.0	1.4	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2334)
Glyco_hydro_57	PF03065.15	gi|529078431|ref|YP_008377434.1|	-	0.061	12.5	0.0	0.085	12.0	0.0	1.1	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	57
LPG_synthase_TM	PF03706.13	gi|529078432|ref|YP_008377435.1|	-	7.6e-31	107.8	44.2	9.1e-31	107.5	44.2	1.0	1	0	0	1	1	1	1	Lysylphosphatidylglycerol	synthase	TM	region
MTP18	PF10558.9	gi|529078432|ref|YP_008377435.1|	-	0.11	12.5	0.3	1.2	9.0	0.0	2.2	1	1	1	2	2	2	0	Mitochondrial	18	KDa	protein	(MTP18)
PMT_2	PF13231.6	gi|529078433|ref|YP_008377436.1|	-	2.9e-12	47.1	8.3	2.9e-12	47.1	8.3	3.2	3	1	0	3	3	3	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PMT	PF02366.18	gi|529078433|ref|YP_008377436.1|	-	1.7e-08	34.4	8.3	1.7e-08	34.4	8.3	2.4	1	1	1	2	2	2	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
GT87	PF09594.10	gi|529078433|ref|YP_008377436.1|	-	0.0048	16.6	31.0	0.0048	16.6	31.0	3.5	4	0	0	4	4	4	2	Glycosyltransferase	family	87
DUF4131	PF13567.6	gi|529078433|ref|YP_008377436.1|	-	0.13	11.9	0.1	0.13	11.9	0.1	5.0	3	2	3	6	6	6	0	Domain	of	unknown	function	(DUF4131)
DUF309	PF03745.14	gi|529078434|ref|YP_008377437.1|	-	5.8e-17	61.1	0.0	8.8e-17	60.5	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF309)
Metallophos_2	PF12850.7	gi|529078434|ref|YP_008377437.1|	-	0.12	12.6	0.2	0.15	12.2	0.2	1.2	1	0	0	1	1	1	0	Calcineurin-like	phosphoesterase	superfamily	domain
CBS	PF00571.28	gi|529078435|ref|YP_008377438.1|	-	6.7e-22	77.7	2.1	1.5e-10	41.4	0.0	2.1	2	0	0	2	2	2	2	CBS	domain
GATase_5	PF13507.6	gi|529078436|ref|YP_008377439.1|	-	5.7e-46	156.7	0.0	7.1e-46	156.4	0.0	1.0	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase	PF00117.28	gi|529078436|ref|YP_008377439.1|	-	2.5e-08	33.9	0.0	3.1e-08	33.6	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.14	gi|529078436|ref|YP_008377439.1|	-	3.9e-07	29.9	0.0	6.6e-07	29.1	0.0	1.4	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
DJ-1_PfpI	PF01965.24	gi|529078436|ref|YP_008377439.1|	-	1.9e-06	27.8	0.0	2.6e-06	27.3	0.0	1.2	1	0	0	1	1	1	1	DJ-1/PfpI	family
Peptidase_C26	PF07722.13	gi|529078436|ref|YP_008377439.1|	-	0.011	15.5	0.1	0.031	14.0	0.2	1.7	1	1	0	1	1	1	0	Peptidase	C26
SNO	PF01174.19	gi|529078436|ref|YP_008377439.1|	-	0.025	14.4	0.0	0.039	13.8	0.0	1.2	1	0	0	1	1	1	0	SNO	glutamine	amidotransferase	family
PurS	PF02700.14	gi|529078437|ref|YP_008377440.1|	-	5.7e-24	84.1	0.0	6.2e-24	84.0	0.0	1.0	1	0	0	1	1	1	1	Phosphoribosylformylglycinamidine	(FGAM)	synthase
DUF5505	PF17610.2	gi|529078437|ref|YP_008377440.1|	-	0.014	15.4	0.0	0.016	15.2	0.0	1.0	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5505)
AP_endonuc_2	PF01261.24	gi|529078437|ref|YP_008377440.1|	-	0.035	13.6	0.2	0.039	13.4	0.2	1.0	1	0	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
pXO2-72	PF17443.2	gi|529078437|ref|YP_008377440.1|	-	0.11	12.7	0.1	1.9	8.8	0.0	2.1	1	1	1	2	2	2	0	Uncharacterized	protein	pXO2-72
AP2	PF00847.20	gi|529078437|ref|YP_008377440.1|	-	4.4	7.6	4.2	4.6	7.6	0.2	2.1	2	0	0	2	2	2	0	AP2	domain
Oxidored_q6	PF01058.22	gi|529078439|ref|YP_008377442.1|	-	2.7e-28	98.4	0.4	3.7e-28	98.0	0.4	1.2	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
Complex1_30kDa	PF00329.19	gi|529078440|ref|YP_008377443.1|	-	8.4e-26	91.0	0.0	1.1e-25	90.6	0.0	1.1	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
Nup35_RRM_2	PF14605.6	gi|529078440|ref|YP_008377443.1|	-	0.039	14.0	0.1	0.063	13.3	0.1	1.3	1	0	0	1	1	1	0	Nup53/35/40-type	RNA	recognition	motif
Peripla_BP_4	PF13407.6	gi|529078440|ref|YP_008377443.1|	-	0.055	13.0	0.0	0.077	12.6	0.0	1.1	1	0	0	1	1	1	0	Periplasmic	binding	protein	domain
Complex1_49kDa	PF00346.19	gi|529078441|ref|YP_008377444.1|	-	1.1e-69	234.6	0.1	1.9e-68	230.5	0.1	2.1	1	1	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
NiFeSe_Hases	PF00374.19	gi|529078441|ref|YP_008377444.1|	-	5.6e-16	58.5	0.8	3.1e-12	46.2	0.0	2.7	3	0	0	3	3	3	2	Nickel-dependent	hydrogenase
NADHdh	PF00146.21	gi|529078442|ref|YP_008377445.1|	-	7.3e-70	235.6	11.7	9e-70	235.3	11.7	1.0	1	0	0	1	1	1	1	NADH	dehydrogenase
Fer4	PF00037.27	gi|529078443|ref|YP_008377446.1|	-	8.6e-13	47.5	13.7	8.7e-08	31.7	2.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|529078443|ref|YP_008377446.1|	-	1.1e-12	48.3	22.0	1.9e-10	41.1	11.5	1.5	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|529078443|ref|YP_008377446.1|	-	6.9e-10	38.9	20.6	6.2e-07	29.4	11.5	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|529078443|ref|YP_008377446.1|	-	1.4e-09	37.6	15.7	1.5e-07	31.2	4.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|529078443|ref|YP_008377446.1|	-	6e-09	35.9	11.0	9e-09	35.4	11.0	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|529078443|ref|YP_008377446.1|	-	1.7e-08	35.3	7.5	1.4e-05	25.9	0.3	2.3	2	1	1	3	3	3	3	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.6	gi|529078443|ref|YP_008377446.1|	-	3.3e-06	27.1	8.1	5.2e-06	26.5	8.1	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|529078443|ref|YP_008377446.1|	-	1e-05	25.3	13.2	0.0038	17.2	3.0	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|529078443|ref|YP_008377446.1|	-	1.3e-05	25.9	3.1	0.067	14.0	0.2	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|529078443|ref|YP_008377446.1|	-	0.00093	19.7	13.9	0.023	15.2	2.0	2.2	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|529078443|ref|YP_008377446.1|	-	0.001	19.4	13.4	0.13	12.9	3.3	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|529078443|ref|YP_008377446.1|	-	0.0025	18.2	13.8	0.2	12.1	14.3	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|529078443|ref|YP_008377446.1|	-	0.011	16.4	15.1	0.21	12.3	2.1	3.2	2	1	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_3	PF12798.7	gi|529078443|ref|YP_008377446.1|	-	0.012	16.4	4.8	0.012	16.4	4.8	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
HycI	PF01750.18	gi|529078444|ref|YP_008377447.1|	-	2.4e-14	53.3	0.0	3e-14	53.0	0.0	1.1	1	0	0	1	1	1	1	Hydrogenase	maturation	protease
Proton_antipo_M	PF00361.20	gi|529078445|ref|YP_008377448.1|	-	4.3e-63	213.2	16.4	9e-63	212.2	16.4	1.5	1	0	0	1	1	1	1	Proton-conducting	membrane	transporter
DUF4514	PF14986.6	gi|529078445|ref|YP_008377448.1|	-	4	7.5	6.5	5.3	7.1	0.4	3.5	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4514)
Oxidored_q3	PF00499.20	gi|529078446|ref|YP_008377449.1|	-	8.1e-11	41.8	14.4	1e-10	41.5	14.4	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
DUF4040	PF13244.6	gi|529078446|ref|YP_008377449.1|	-	1e-05	25.6	16.8	1e-05	25.6	16.8	2.7	3	1	0	3	3	3	1	Domain	of	unknown	function	(DUF4040)
DUF3382	PF11862.8	gi|529078446|ref|YP_008377449.1|	-	1.9	8.8	16.1	3.7	7.9	9.0	3.1	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF3382)
Oxidored_q2	PF00420.24	gi|529078447|ref|YP_008377450.1|	-	5.1e-10	38.9	8.5	2.8e-09	36.6	8.5	1.8	1	1	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
TMEM154	PF15102.6	gi|529078447|ref|YP_008377450.1|	-	0.16	11.9	0.3	0.18	11.7	0.3	1.2	1	0	0	1	1	1	0	TMEM154	protein	family
DUF2207	PF09972.9	gi|529078447|ref|YP_008377450.1|	-	1.3	7.7	3.5	1.3	7.6	3.5	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
Proton_antipo_M	PF00361.20	gi|529078448|ref|YP_008377451.1|	-	5.2e-71	239.2	14.8	5.2e-71	239.2	14.8	1.6	2	0	0	2	2	2	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|529078448|ref|YP_008377451.1|	-	5.3e-09	36.0	0.4	5.3e-09	36.0	0.4	2.4	2	0	0	2	2	2	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
NPCBM_assoc	PF10633.9	gi|529078449|ref|YP_008377452.1|	-	3.5e-09	36.8	14.9	0.00051	20.2	1.2	5.7	6	1	0	6	6	6	2	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
MG2	PF01835.19	gi|529078449|ref|YP_008377452.1|	-	2.5e-06	27.9	0.9	1.6	9.3	0.1	4.4	3	1	0	4	4	4	2	MG2	domain
DUF916	PF06030.12	gi|529078449|ref|YP_008377452.1|	-	9.7e-06	25.7	0.3	4.6	7.3	0.0	4.4	3	1	0	3	3	3	1	Bacterial	protein	of	unknown	function	(DUF916)
DUF4832	PF16116.5	gi|529078449|ref|YP_008377452.1|	-	2.4e-05	24.3	0.1	0.037	13.9	0.0	2.5	2	1	0	2	2	2	2	Domain	of	unknown	function	(DUF4832)
fn3_5	PF06280.12	gi|529078449|ref|YP_008377452.1|	-	2.5e-05	24.9	7.0	0.023	15.4	1.3	4.2	1	1	0	2	2	2	2	Fn3-like	domain
DUF4625	PF15418.6	gi|529078449|ref|YP_008377452.1|	-	0.0002	21.6	0.2	0.78	10.0	0.0	2.6	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4625)
N_BRCA1_IG	PF16158.5	gi|529078449|ref|YP_008377452.1|	-	0.0027	18.4	0.2	0.092	13.5	0.0	3.1	3	1	1	4	4	4	1	Ig-like	domain	from	next	to	BRCA1	gene
Transglut_N	PF00868.20	gi|529078449|ref|YP_008377452.1|	-	0.0041	17.5	1.1	1.5	9.2	0.0	3.4	3	2	0	3	3	3	1	Transglutaminase	family
DUF3152	PF11350.8	gi|529078449|ref|YP_008377452.1|	-	0.014	15.1	0.1	0.03	14.0	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3152)
Fn3-like	PF14310.6	gi|529078449|ref|YP_008377452.1|	-	0.023	14.8	0.1	4.6	7.4	0.0	3.7	3	0	0	3	3	3	0	Fibronectin	type	III-like	domain
DUF11	PF01345.18	gi|529078449|ref|YP_008377452.1|	-	0.057	13.7	18.9	0.071	13.4	1.1	4.5	3	3	1	4	4	4	0	Domain	of	unknown	function	DUF11
BACON	PF13004.7	gi|529078449|ref|YP_008377452.1|	-	0.092	12.7	7.1	0.11	12.5	0.2	4.0	4	0	0	4	4	4	0	Putative	binding	domain,	N-terminal
DUF5620	PF18522.1	gi|529078449|ref|YP_008377452.1|	-	0.11	12.9	2.8	1.8	9.0	0.1	2.9	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF5620)
DUF3682	PF12446.8	gi|529078449|ref|YP_008377452.1|	-	0.96	9.9	8.3	0.11	13.0	2.6	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3682)
Formyl_trans_N	PF00551.19	gi|529078450|ref|YP_008377453.1|	-	3.3e-43	147.5	0.0	4.6e-43	147.1	0.0	1.2	1	0	0	1	1	1	1	Formyl	transferase
ACT_6	PF13740.6	gi|529078450|ref|YP_008377453.1|	-	8.7e-11	41.7	0.9	2.3e-10	40.3	0.9	1.6	1	0	0	1	1	1	1	ACT	domain
ACT	PF01842.25	gi|529078450|ref|YP_008377453.1|	-	1.3e-06	28.0	0.6	7.5e-06	25.6	0.3	2.5	3	0	0	3	3	3	1	ACT	domain
ACT_4	PF13291.6	gi|529078450|ref|YP_008377453.1|	-	0.0017	18.9	0.0	0.004	17.7	0.0	1.6	1	0	0	1	1	1	1	ACT	domain
OB_aCoA_assoc	PF01796.17	gi|529078450|ref|YP_008377453.1|	-	0.066	13.2	0.2	0.34	10.9	0.1	2.4	2	1	0	2	2	2	0	DUF35	OB-fold	domain,	acyl-CoA-associated
HSP20	PF00011.21	gi|529078451|ref|YP_008377454.1|	-	0.16	12.2	0.0	0.36	11.0	0.0	1.6	1	1	0	1	1	1	0	Hsp20/alpha	crystallin	family
SAICAR_synt	PF01259.18	gi|529078452|ref|YP_008377455.1|	-	2.4e-23	83.0	0.0	1e-22	81.0	0.0	1.8	1	1	0	1	1	1	1	SAICAR	synthetase
AAA	PF00004.29	gi|529078453|ref|YP_008377456.1|	-	2.1e-38	131.7	0.1	6.4e-38	130.2	0.0	1.9	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|529078453|ref|YP_008377456.1|	-	6.9e-11	41.8	0.1	1.7e-10	40.5	0.1	1.6	1	0	0	1	1	1	1	AAA+	lid	domain
AAA_5	PF07728.14	gi|529078453|ref|YP_008377456.1|	-	1.4e-06	28.3	0.0	7.6e-06	26.0	0.0	2.3	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_16	PF13191.6	gi|529078453|ref|YP_008377456.1|	-	1.3e-05	25.7	1.2	0.00023	21.6	1.2	3.0	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_33	PF13671.6	gi|529078453|ref|YP_008377456.1|	-	9.7e-05	22.6	0.0	0.00073	19.7	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|529078453|ref|YP_008377456.1|	-	0.00034	20.9	0.3	0.011	16.0	0.0	2.8	2	1	1	3	3	3	1	AAA	domain
RuvB_N	PF05496.12	gi|529078453|ref|YP_008377456.1|	-	0.00052	19.8	0.1	0.0015	18.3	0.0	2.0	1	1	1	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_18	PF13238.6	gi|529078453|ref|YP_008377456.1|	-	0.0007	20.2	0.2	0.0042	17.6	0.0	2.4	3	0	0	3	3	2	1	AAA	domain
TIP49	PF06068.13	gi|529078453|ref|YP_008377456.1|	-	0.00081	18.7	0.0	0.0036	16.6	0.0	2.0	2	1	0	2	2	2	1	TIP49	P-loop	domain
AAA_7	PF12775.7	gi|529078453|ref|YP_008377456.1|	-	0.00085	18.9	0.0	0.002	17.7	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
AAA_28	PF13521.6	gi|529078453|ref|YP_008377456.1|	-	0.0021	18.3	0.1	0.01	16.1	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_2	PF07724.14	gi|529078453|ref|YP_008377456.1|	-	0.0031	17.7	0.0	0.0078	16.3	0.0	1.7	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
Cytidylate_kin2	PF13189.6	gi|529078453|ref|YP_008377456.1|	-	0.0039	17.4	0.1	0.015	15.4	0.0	2.0	2	0	0	2	2	2	1	Cytidylate	kinase-like	family
T2SSE	PF00437.20	gi|529078453|ref|YP_008377456.1|	-	0.0041	16.2	0.0	0.0082	15.2	0.0	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
IstB_IS21	PF01695.17	gi|529078453|ref|YP_008377456.1|	-	0.0042	16.8	0.0	0.011	15.5	0.0	1.8	1	1	0	1	1	1	1	IstB-like	ATP	binding	protein
DUF815	PF05673.13	gi|529078453|ref|YP_008377456.1|	-	0.0082	15.3	0.0	0.014	14.6	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
SKI	PF01202.22	gi|529078453|ref|YP_008377456.1|	-	0.013	15.7	0.2	0.031	14.4	0.0	1.7	2	0	0	2	2	1	0	Shikimate	kinase
Cytidylate_kin	PF02224.18	gi|529078453|ref|YP_008377456.1|	-	0.014	15.2	0.9	0.053	13.2	0.0	2.3	2	1	1	3	3	3	0	Cytidylate	kinase
AAA_11	PF13086.6	gi|529078453|ref|YP_008377456.1|	-	0.015	15.1	0.0	0.025	14.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.21	gi|529078453|ref|YP_008377456.1|	-	0.015	14.6	0.0	0.03	13.7	0.0	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
MMR_HSR1	PF01926.23	gi|529078453|ref|YP_008377456.1|	-	0.021	14.9	0.0	0.068	13.3	0.0	1.9	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_17	PF13207.6	gi|529078453|ref|YP_008377456.1|	-	0.025	15.0	1.9	0.073	13.5	0.0	2.7	3	1	1	4	4	3	0	AAA	domain
ABC_tran	PF00005.27	gi|529078453|ref|YP_008377456.1|	-	0.027	15.0	0.0	0.079	13.5	0.0	1.9	1	0	0	1	1	1	0	ABC	transporter
AAA_25	PF13481.6	gi|529078453|ref|YP_008377456.1|	-	0.028	14.0	0.0	0.082	12.5	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_3	PF07726.11	gi|529078453|ref|YP_008377456.1|	-	0.034	14.0	0.0	0.069	13.0	0.0	1.6	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RNA_helicase	PF00910.22	gi|529078453|ref|YP_008377456.1|	-	0.066	13.6	0.0	0.16	12.4	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
Sigma54_activ_2	PF14532.6	gi|529078453|ref|YP_008377456.1|	-	0.093	12.8	0.0	0.25	11.5	0.0	1.7	2	0	0	2	2	1	0	Sigma-54	interaction	domain
AAA_8	PF12780.7	gi|529078453|ref|YP_008377456.1|	-	0.13	11.5	0.0	0.28	10.5	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region	D4
ResIII	PF04851.15	gi|529078453|ref|YP_008377456.1|	-	0.15	12.0	0.0	0.24	11.4	0.0	1.4	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
Lactamase_B_2	PF12706.7	gi|529078454|ref|YP_008377457.1|	-	1.3e-24	86.8	0.2	1.7e-24	86.4	0.2	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|529078454|ref|YP_008377457.1|	-	8.7e-09	35.7	3.4	1.4e-08	35.0	3.4	1.5	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
TrmB	PF01978.19	gi|529078455|ref|YP_008377458.1|	-	0.00032	20.5	0.0	0.00044	20.1	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|529078455|ref|YP_008377458.1|	-	0.0004	20.4	0.2	0.00066	19.7	0.2	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|529078455|ref|YP_008377458.1|	-	0.0012	18.8	0.0	0.0019	18.1	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.7	gi|529078455|ref|YP_008377458.1|	-	0.0012	18.7	0.0	0.0017	18.2	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|529078455|ref|YP_008377458.1|	-	0.0082	16.0	0.1	0.013	15.3	0.1	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TetR_N	PF00440.23	gi|529078455|ref|YP_008377458.1|	-	0.022	14.5	0.0	0.043	13.6	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
HTH_10	PF04967.12	gi|529078455|ref|YP_008377458.1|	-	0.024	14.4	0.0	0.039	13.8	0.0	1.3	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Phage_CI_repr	PF07022.13	gi|529078455|ref|YP_008377458.1|	-	0.043	13.9	0.0	0.37	10.9	0.0	2.1	2	0	0	2	2	2	0	Bacteriophage	CI	repressor	helix-turn-helix	domain
HTH_29	PF13551.6	gi|529078455|ref|YP_008377458.1|	-	0.044	13.8	0.0	0.059	13.4	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_Crp_2	PF13545.6	gi|529078455|ref|YP_008377458.1|	-	0.1	12.6	0.0	0.12	12.4	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|529078455|ref|YP_008377458.1|	-	0.17	11.5	0.0	0.34	10.5	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
FUR	PF01475.19	gi|529078455|ref|YP_008377458.1|	-	0.18	12.0	0.0	0.19	11.9	0.0	1.1	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
HTH_28	PF13518.6	gi|529078455|ref|YP_008377458.1|	-	0.18	11.9	0.0	0.31	11.2	0.0	1.5	1	1	0	1	1	1	0	Helix-turn-helix	domain
Replic_Relax	PF13814.6	gi|529078458|ref|YP_008377461.1|	-	0.039	14.0	0.0	0.059	13.4	0.0	1.3	1	0	0	1	1	1	0	Replication-relaxation
MS_channel	PF00924.18	gi|529078461|ref|YP_008377464.1|	-	8.6e-15	54.8	2.3	1.4e-14	54.1	2.3	1.3	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
TM_helix	PF05552.12	gi|529078461|ref|YP_008377464.1|	-	7e-05	22.7	0.2	7e-05	22.7	0.2	2.7	3	0	0	3	3	3	1	Conserved	TM	helix
eIF2_C	PF09173.11	gi|529078462|ref|YP_008377465.1|	-	1.4e-30	105.3	0.1	3.1e-30	104.3	0.1	1.6	1	0	0	1	1	1	1	Initiation	factor	eIF2	gamma,	C	terminal
GTP_EFTU	PF00009.27	gi|529078462|ref|YP_008377465.1|	-	3.7e-30	104.9	3.0	1.5e-29	102.9	3.0	1.8	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D2	PF03144.25	gi|529078462|ref|YP_008377465.1|	-	6.5e-06	26.5	0.5	1.9e-05	25.0	0.5	1.9	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
RsgA_GTPase	PF03193.16	gi|529078462|ref|YP_008377465.1|	-	2.7e-05	24.1	0.9	0.0027	17.6	0.1	2.3	2	0	0	2	2	2	1	RsgA	GTPase
MMR_HSR1	PF01926.23	gi|529078462|ref|YP_008377465.1|	-	7.5e-05	22.8	0.0	0.00022	21.3	0.0	1.8	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
MeaB	PF03308.16	gi|529078462|ref|YP_008377465.1|	-	0.002	17.2	1.0	0.4	9.6	0.3	2.3	2	0	0	2	2	2	2	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
SRPRB	PF09439.10	gi|529078462|ref|YP_008377465.1|	-	0.018	14.5	0.1	0.53	9.7	0.1	2.2	1	1	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
FeoB_N	PF02421.18	gi|529078462|ref|YP_008377465.1|	-	0.019	14.5	0.8	5.7	6.4	0.5	2.4	2	1	0	2	2	2	0	Ferrous	iron	transport	protein	B
MMR_HSR1_Xtn	PF16897.5	gi|529078462|ref|YP_008377465.1|	-	0.039	14.0	0.0	0.078	13.0	0.0	1.5	1	0	0	1	1	1	0	C-terminal	region	of	MMR_HSR1	domain
PduV-EutP	PF10662.9	gi|529078462|ref|YP_008377465.1|	-	0.046	13.5	0.4	1.2	8.9	0.0	2.2	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
Dynamin_N	PF00350.23	gi|529078462|ref|YP_008377465.1|	-	0.064	13.3	0.1	0.18	11.9	0.1	2.0	1	1	0	1	1	1	0	Dynamin	family
PIN_9	PF18477.1	gi|529078463|ref|YP_008377466.1|	-	2.9e-40	137.2	0.4	3.3e-40	137.0	0.4	1.0	1	0	0	1	1	1	1	PIN	like	domain
PIN_4	PF13638.6	gi|529078463|ref|YP_008377466.1|	-	9.3e-06	26.0	0.1	0.00012	22.4	0.0	1.8	1	1	1	2	2	2	1	PIN	domain
DUF188	PF02639.14	gi|529078463|ref|YP_008377466.1|	-	0.02	14.5	0.1	0.029	14.0	0.1	1.2	1	0	0	1	1	1	0	Uncharacterized	BCR,	YaiI/YqxD	family	COG1671
S1	PF00575.23	gi|529078464|ref|YP_008377467.1|	-	1.1e-15	57.7	0.2	1.1e-15	57.7	0.2	1.7	2	0	0	2	2	2	1	S1	RNA	binding	domain
SHS2_Rpb7-N	PF03876.17	gi|529078464|ref|YP_008377467.1|	-	5.3e-14	52.3	0.1	8.2e-14	51.7	0.1	1.3	1	0	0	1	1	1	1	SHS2	domain	found	in	N	terminus	of	Rpb7p/Rpc25p/MJ0397
S1_2	PF13509.6	gi|529078464|ref|YP_008377467.1|	-	0.11	12.6	0.0	1.2	9.2	0.0	2.3	1	1	0	1	1	1	0	S1	domain
FtsK_SpoIIIE_N	PF12538.8	gi|529078464|ref|YP_008377467.1|	-	0.16	12.1	0.0	0.81	9.9	0.0	2.0	2	0	0	2	2	2	0	DNA	transporter
Spt4	PF06093.13	gi|529078465|ref|YP_008377468.1|	-	4.5e-14	52.3	0.2	5.2e-14	52.1	0.2	1.1	1	0	0	1	1	1	1	Spt4/RpoE2	zinc	finger
DZR	PF12773.7	gi|529078465|ref|YP_008377468.1|	-	0.015	15.4	0.9	0.02	14.9	0.9	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
NOB1_Zn_bind	PF08772.11	gi|529078465|ref|YP_008377468.1|	-	0.028	14.6	0.1	0.039	14.1	0.1	1.2	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-RRN7	PF11781.8	gi|529078465|ref|YP_008377468.1|	-	0.037	13.7	6.2	2	8.1	2.2	2.2	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
HypA	PF01155.19	gi|529078465|ref|YP_008377468.1|	-	0.071	13.1	0.4	0.081	12.9	0.4	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|529078465|ref|YP_008377468.1|	-	0.15	12.2	5.1	0.4	10.8	5.1	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
Rubredoxin_2	PF18073.1	gi|529078465|ref|YP_008377468.1|	-	0.29	10.9	6.1	0.83	9.4	0.3	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
Nudix_N_2	PF14803.6	gi|529078465|ref|YP_008377468.1|	-	0.38	10.7	8.4	4.1	7.4	2.5	2.2	1	1	1	2	2	2	0	Nudix	N-terminal
zf_UBZ	PF18439.1	gi|529078465|ref|YP_008377468.1|	-	0.92	9.2	4.1	8.8	6.0	0.5	2.3	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
DUF359	PF04019.12	gi|529078466|ref|YP_008377469.1|	-	3.6e-39	133.3	0.0	4.5e-39	133.0	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF359)
PAS_4	PF08448.10	gi|529078467|ref|YP_008377470.1|	-	8.4e-12	45.3	0.3	5.9e-11	42.6	0.0	2.6	3	1	0	3	3	3	1	PAS	fold
HATPase_c	PF02518.26	gi|529078467|ref|YP_008377470.1|	-	4.9e-11	43.1	0.2	2.2e-10	41.1	0.1	2.0	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|529078467|ref|YP_008377470.1|	-	8.6e-09	35.3	0.2	2.4e-08	33.9	0.2	1.9	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_2	PF13581.6	gi|529078467|ref|YP_008377470.1|	-	1.3e-05	25.2	0.1	3.2e-05	23.9	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
Med12	PF09497.10	gi|529078467|ref|YP_008377470.1|	-	0.1	12.9	0.0	0.85	10.0	0.0	2.5	2	0	0	2	2	2	0	Transcription	mediator	complex	subunit	Med12
ETF	PF01012.21	gi|529078468|ref|YP_008377471.1|	-	6e-41	140.3	2.2	7.4e-41	140.0	2.2	1.1	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
ETF	PF01012.21	gi|529078469|ref|YP_008377472.1|	-	3.5e-43	147.6	0.0	5.6e-43	146.9	0.0	1.3	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
ETF_alpha	PF00766.19	gi|529078469|ref|YP_008377472.1|	-	7.7e-33	112.4	0.1	1.5e-32	111.5	0.1	1.5	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	FAD-binding	domain
FAD_binding_2	PF00890.24	gi|529078470|ref|YP_008377473.1|	-	7.7e-14	51.6	2.0	6.9e-09	35.3	0.0	2.9	3	0	0	3	3	3	2	FAD	binding	domain
DAO	PF01266.24	gi|529078470|ref|YP_008377473.1|	-	4.8e-12	46.1	7.4	1.8e-06	27.8	0.8	2.3	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|529078470|ref|YP_008377473.1|	-	1.9e-08	34.1	0.2	2.9e-08	33.5	0.2	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|529078470|ref|YP_008377473.1|	-	3.8e-08	32.9	0.0	5.3e-08	32.4	0.0	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|529078470|ref|YP_008377473.1|	-	5.8e-08	32.3	0.1	3.2e-06	26.6	0.1	2.2	2	0	0	2	2	2	1	Thi4	family
HI0933_like	PF03486.14	gi|529078470|ref|YP_008377473.1|	-	6.7e-08	31.6	1.8	1.2e-06	27.5	1.8	2.1	1	1	0	1	1	1	1	HI0933-like	protein
GIDA	PF01134.22	gi|529078470|ref|YP_008377473.1|	-	2.9e-07	29.9	0.4	8.4e-07	28.4	0.4	1.7	1	1	0	1	1	1	1	Glucose	inhibited	division	protein	A
FAD_binding_3	PF01494.19	gi|529078470|ref|YP_008377473.1|	-	3.3e-07	29.9	8.0	1.5e-06	27.7	8.0	2.0	1	1	0	1	1	1	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|529078470|ref|YP_008377473.1|	-	8.1e-07	29.2	0.0	6.3e-06	26.3	0.0	2.4	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.27	gi|529078470|ref|YP_008377473.1|	-	0.0002	21.8	0.5	0.15	12.7	0.5	2.7	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|529078470|ref|YP_008377473.1|	-	0.0025	17.0	1.0	0.021	13.9	1.0	2.1	1	1	0	1	1	1	1	Lycopene	cyclase	protein
Pyr_redox_3	PF13738.6	gi|529078470|ref|YP_008377473.1|	-	0.0032	16.8	0.4	0.02	14.1	0.5	1.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.14	gi|529078470|ref|YP_008377473.1|	-	0.0079	15.1	1.0	2.1	7.1	0.5	2.2	1	1	1	2	2	2	2	Tryptophan	halogenase
GMC_oxred_N	PF00732.19	gi|529078470|ref|YP_008377473.1|	-	0.019	14.4	0.0	2.8	7.2	0.0	2.2	2	0	0	2	2	2	0	GMC	oxidoreductase
3HCDH_N	PF02737.18	gi|529078470|ref|YP_008377473.1|	-	0.22	11.4	0.4	0.42	10.5	0.4	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ETF_QO	PF05187.13	gi|529078471|ref|YP_008377474.1|	-	3.4e-07	30.3	1.8	4.4e-07	30.0	1.8	1.2	1	0	0	1	1	1	1	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Fer4_9	PF13187.6	gi|529078471|ref|YP_008377474.1|	-	2.9e-06	27.3	9.4	6.7e-06	26.2	9.4	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|529078471|ref|YP_008377474.1|	-	3.5e-05	23.6	15.6	4e-05	23.5	2.7	2.5	2	1	0	2	2	2	1	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|529078471|ref|YP_008377474.1|	-	0.00012	21.7	16.2	0.00028	20.6	2.2	3.1	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|529078471|ref|YP_008377474.1|	-	0.00028	21.2	1.0	0.00028	21.2	1.0	2.7	2	1	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|529078471|ref|YP_008377474.1|	-	0.00031	20.8	11.1	0.0008	19.5	11.3	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|529078471|ref|YP_008377474.1|	-	0.00051	20.6	11.6	0.004	17.7	12.0	2.1	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|529078471|ref|YP_008377474.1|	-	0.00088	19.4	7.6	0.017	15.2	0.4	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|529078471|ref|YP_008377474.1|	-	0.0013	18.7	13.7	0.008	16.2	1.5	2.9	2	1	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|529078471|ref|YP_008377474.1|	-	0.0028	18.5	9.3	0.051	14.5	0.6	2.8	2	1	1	3	3	3	1	4Fe-4S	double	cluster	binding	domain
Fer4_11	PF13247.6	gi|529078471|ref|YP_008377474.1|	-	0.0037	17.4	2.4	0.0046	17.1	2.4	1.1	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|529078471|ref|YP_008377474.1|	-	0.0079	16.6	0.3	0.0079	16.6	0.3	2.5	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|529078471|ref|YP_008377474.1|	-	0.022	15.3	0.4	0.022	15.3	0.4	2.3	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_17	PF13534.6	gi|529078471|ref|YP_008377474.1|	-	0.079	13.5	12.7	1.7	9.3	12.7	2.6	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|529078471|ref|YP_008377474.1|	-	0.22	12.5	16.4	0.44	11.6	4.2	2.6	2	1	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_20	PF14691.6	gi|529078471|ref|YP_008377474.1|	-	0.39	10.5	5.3	5.8	6.7	0.3	2.1	2	0	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_5	PF12801.7	gi|529078471|ref|YP_008377474.1|	-	2	8.4	4.7	0.87	9.6	0.8	2.0	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|529078471|ref|YP_008377474.1|	-	4.1	7.6	8.9	24	5.1	8.9	1.9	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
TAT_signal	PF10518.9	gi|529078472|ref|YP_008377475.1|	-	0.21	11.5	3.0	0.42	10.5	3.0	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Zip	PF02535.22	gi|529078473|ref|YP_008377476.1|	-	4.9e-14	52.3	15.4	9e-12	44.9	6.9	2.2	1	1	1	2	2	2	2	ZIP	Zinc	transporter
ADH_zinc_N	PF00107.26	gi|529078474|ref|YP_008377477.1|	-	1.6e-23	83.1	0.1	2.8e-23	82.3	0.1	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|529078474|ref|YP_008377477.1|	-	2.5e-16	59.5	0.1	4.1e-16	58.8	0.1	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N_2	PF13602.6	gi|529078474|ref|YP_008377477.1|	-	2.3e-12	48.1	0.1	7e-12	46.6	0.0	1.8	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
Lactamase_B_2	PF12706.7	gi|529078476|ref|YP_008377479.1|	-	9.5e-22	77.5	1.5	3.7e-10	39.7	0.1	2.2	1	1	0	2	2	2	2	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|529078476|ref|YP_008377479.1|	-	3.6e-12	46.7	6.4	1.4e-10	41.5	6.4	2.3	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_4	PF13691.6	gi|529078476|ref|YP_008377479.1|	-	0.00012	21.7	0.0	0.00022	20.8	0.0	1.4	1	0	0	1	1	1	1	tRNase	Z	endonuclease
HATPase_c	PF02518.26	gi|529078477|ref|YP_008377480.1|	-	1e-16	61.5	0.0	1.9e-16	60.6	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|529078477|ref|YP_008377480.1|	-	2.6e-12	46.8	0.1	4.6e-12	46.0	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HisKA_4TM	PF16926.5	gi|529078477|ref|YP_008377480.1|	-	5.7e-12	45.5	4.7	9.1e-12	44.8	4.7	1.4	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
HATPase_c_5	PF14501.6	gi|529078477|ref|YP_008377480.1|	-	1.2e-05	25.1	0.0	2.3e-05	24.2	0.0	1.4	1	0	0	1	1	1	1	GHKL	domain
HisKA	PF00512.25	gi|529078477|ref|YP_008377480.1|	-	0.0013	18.7	0.5	0.0037	17.3	0.1	2.0	1	1	1	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
SPOB_a	PF14689.6	gi|529078477|ref|YP_008377480.1|	-	0.0039	16.9	0.2	0.0068	16.1	0.2	1.4	1	0	0	1	1	1	1	Sensor_kinase_SpoOB-type,	alpha-helical	domain
HATPase_c_3	PF13589.6	gi|529078477|ref|YP_008377480.1|	-	0.085	12.7	0.0	0.16	11.8	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF3093	PF11292.8	gi|529078477|ref|YP_008377480.1|	-	6.3	7.1	6.6	0.43	10.8	0.2	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3093)
Glyoxalase	PF00903.25	gi|529078478|ref|YP_008377481.1|	-	1.2e-17	64.3	0.2	1.4e-17	64.1	0.2	1.0	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.6	gi|529078478|ref|YP_008377481.1|	-	9.5e-11	41.9	0.6	2.6e-10	40.5	0.5	1.6	1	1	1	2	2	2	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|529078478|ref|YP_008377481.1|	-	1.7e-07	31.9	3.5	2e-07	31.7	3.5	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Polysacc_deac_1	PF01522.21	gi|529078479|ref|YP_008377482.1|	-	2.4e-13	50.0	0.0	6e-11	42.3	0.0	2.4	2	0	0	2	2	2	2	Polysaccharide	deacetylase
DUF2334	PF10096.9	gi|529078479|ref|YP_008377482.1|	-	3.5e-06	26.8	0.0	1.1e-05	25.2	0.0	1.7	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2334)
DUF3072	PF11272.8	gi|529078479|ref|YP_008377482.1|	-	0.085	12.8	2.7	21	5.1	0.1	3.7	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF3072)
DUF460	PF04312.13	gi|529078480|ref|YP_008377483.1|	-	3.1e-49	166.3	0.6	8.1e-49	164.9	0.2	2.0	2	0	0	2	2	1	1	Protein	of	unknown	function	(DUF460)
DUF812	PF05667.11	gi|529078480|ref|YP_008377483.1|	-	0.0002	20.4	9.6	0.00037	19.5	9.6	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF812)
CortBP2	PF09727.9	gi|529078480|ref|YP_008377483.1|	-	0.00046	20.2	12.7	0.00046	20.2	12.7	1.9	2	0	0	2	2	1	1	Cortactin-binding	protein-2
DUF1664	PF07889.12	gi|529078480|ref|YP_008377483.1|	-	0.00094	19.2	7.2	0.28	11.2	1.5	2.6	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF1664)
FAM76	PF16046.5	gi|529078480|ref|YP_008377483.1|	-	0.0024	17.3	4.0	0.0036	16.7	4.0	1.2	1	0	0	1	1	1	1	FAM76	protein
Exonuc_VII_L	PF02601.15	gi|529078480|ref|YP_008377483.1|	-	0.0026	17.4	7.6	0.01	15.5	7.7	1.8	1	1	0	1	1	1	1	Exonuclease	VII,	large	subunit
TACC_C	PF05010.14	gi|529078480|ref|YP_008377483.1|	-	0.0037	17.1	11.8	0.0037	17.1	11.8	2.0	2	0	0	2	2	2	1	Transforming	acidic	coiled-coil-containing	protein	(TACC),	C-terminal
acVLRF1	PF18859.1	gi|529078480|ref|YP_008377483.1|	-	0.0045	17.3	3.0	0.0045	17.3	3.0	4.5	4	1	0	4	4	3	1	Actinobacteria/chloroflexi	VLRF1	release	factor
Ferritin	PF00210.24	gi|529078480|ref|YP_008377483.1|	-	0.01	15.8	0.2	0.01	15.8	0.2	3.5	3	1	1	4	4	1	0	Ferritin-like	domain
BLOC1_2	PF10046.9	gi|529078480|ref|YP_008377483.1|	-	0.013	15.8	7.5	0.075	13.3	2.0	2.9	1	1	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
SlyX	PF04102.12	gi|529078480|ref|YP_008377483.1|	-	0.014	16.0	12.7	0.34	11.6	3.6	3.2	1	1	2	3	3	3	0	SlyX
Fez1	PF06818.15	gi|529078480|ref|YP_008377483.1|	-	0.015	15.8	16.1	0.015	15.8	16.1	2.1	3	0	0	3	3	1	0	Fez1
Laminin_I	PF06008.14	gi|529078480|ref|YP_008377483.1|	-	0.021	14.5	12.9	0.051	13.3	12.9	1.6	1	0	0	1	1	1	0	Laminin	Domain	I
NPV_P10	PF05531.12	gi|529078480|ref|YP_008377483.1|	-	0.032	14.7	1.6	0.38	11.2	0.5	2.9	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
CENP-Q	PF13094.6	gi|529078480|ref|YP_008377483.1|	-	0.034	14.3	26.5	0.29	11.3	12.7	2.8	1	1	1	2	2	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
AAA_13	PF13166.6	gi|529078480|ref|YP_008377483.1|	-	0.045	12.4	5.9	0.07	11.8	5.9	1.2	1	0	0	1	1	1	0	AAA	domain
DUF4763	PF15960.5	gi|529078480|ref|YP_008377483.1|	-	0.048	13.0	8.4	0.082	12.2	8.4	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4763)
DUF4407	PF14362.6	gi|529078480|ref|YP_008377483.1|	-	0.06	12.7	13.9	0.31	10.4	13.9	2.2	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
FapA	PF03961.13	gi|529078480|ref|YP_008377483.1|	-	0.072	11.7	6.7	0.14	10.8	6.7	1.4	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
DUF724	PF05266.14	gi|529078480|ref|YP_008377483.1|	-	0.082	12.7	10.7	0.23	11.2	10.7	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
ILEI	PF15711.5	gi|529078480|ref|YP_008377483.1|	-	0.16	12.5	0.0	0.54	10.8	0.0	1.8	2	0	0	2	2	1	0	Interleukin-like	EMT	inducer
DUF484	PF04340.12	gi|529078480|ref|YP_008377483.1|	-	0.18	11.5	3.6	0.37	10.5	0.0	2.8	1	1	0	2	2	2	0	Protein	of	unknown	function,	DUF484
Spectrin	PF00435.21	gi|529078480|ref|YP_008377483.1|	-	0.21	12.1	15.8	11	6.6	4.3	4.0	3	1	1	4	4	3	0	Spectrin	repeat
Atg14	PF10186.9	gi|529078480|ref|YP_008377483.1|	-	0.26	10.3	8.9	0.45	9.6	8.9	1.3	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Bacillus_HBL	PF05791.11	gi|529078480|ref|YP_008377483.1|	-	0.28	11.0	1.7	14	5.5	0.2	2.4	1	1	0	2	2	2	0	Bacillus	haemolytic	enterotoxin	(HBL)
DUF16	PF01519.16	gi|529078480|ref|YP_008377483.1|	-	0.31	11.6	9.9	2.1	8.9	8.1	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	DUF16
Spc29	PF17082.5	gi|529078480|ref|YP_008377483.1|	-	0.37	10.6	7.1	3.2	7.5	1.1	2.7	1	1	1	2	2	2	0	Spindle	Pole	Component	29
DUF5082	PF16888.5	gi|529078480|ref|YP_008377483.1|	-	0.4	11.0	7.2	5.8	7.2	0.2	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5082)
DASH_Dam1	PF08653.10	gi|529078480|ref|YP_008377483.1|	-	0.43	10.4	1.5	2.1	8.2	0.2	2.7	3	0	0	3	3	2	0	DASH	complex	subunit	Dam1
Occludin_ELL	PF07303.13	gi|529078480|ref|YP_008377483.1|	-	0.54	11.0	8.6	3.5	8.4	8.6	2.4	1	1	0	1	1	1	0	Occludin	homology	domain
Fib_alpha	PF08702.10	gi|529078480|ref|YP_008377483.1|	-	0.58	10.3	6.3	1.7	8.8	6.3	1.8	1	0	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
Cep57_CLD_2	PF14197.6	gi|529078480|ref|YP_008377483.1|	-	0.67	10.1	20.9	83	3.4	20.9	3.1	1	1	0	1	1	1	0	Centrosome	localisation	domain	of	PPC89
bZIP_1	PF00170.21	gi|529078480|ref|YP_008377483.1|	-	0.93	9.6	17.0	0.97	9.6	0.6	2.6	1	1	1	2	2	2	0	bZIP	transcription	factor
V_ATPase_I	PF01496.19	gi|529078480|ref|YP_008377483.1|	-	1.2	6.9	6.7	1.8	6.4	6.7	1.2	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Sec2p	PF06428.11	gi|529078480|ref|YP_008377483.1|	-	1.3	9.1	17.7	0.66	10.0	3.0	3.6	2	1	1	3	3	3	0	GDP/GTP	exchange	factor	Sec2p
ADIP	PF11559.8	gi|529078480|ref|YP_008377483.1|	-	1.4	9.0	17.6	6.8	6.8	9.9	2.6	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
Cep57_CLD	PF14073.6	gi|529078480|ref|YP_008377483.1|	-	1.5	8.8	19.8	5.5	7.0	9.2	2.5	1	1	0	1	1	1	0	Centrosome	localisation	domain	of	Cep57
HOOK	PF05622.12	gi|529078480|ref|YP_008377483.1|	-	1.5	6.9	19.3	0.62	8.1	9.1	2.4	1	1	1	2	2	2	0	HOOK	protein
DASH_Spc34	PF08657.10	gi|529078480|ref|YP_008377483.1|	-	1.5	8.6	14.8	3	7.6	14.8	1.5	1	0	0	1	1	1	0	DASH	complex	subunit	Spc34
Prefoldin	PF02996.17	gi|529078480|ref|YP_008377483.1|	-	1.9	8.4	12.6	0.84	9.6	4.0	2.9	3	0	0	3	3	2	0	Prefoldin	subunit
COG5	PF10392.9	gi|529078480|ref|YP_008377483.1|	-	2.1	8.6	7.1	9.4	6.4	1.6	2.0	1	1	1	2	2	2	0	Golgi	transport	complex	subunit	5
HMMR_N	PF15905.5	gi|529078480|ref|YP_008377483.1|	-	2.4	7.6	23.5	0.048	13.1	16.7	1.5	2	0	0	2	2	1	0	Hyaluronan	mediated	motility	receptor	N-terminal
DUF641	PF04859.12	gi|529078480|ref|YP_008377483.1|	-	2.6	8.4	19.2	0.077	13.3	6.2	3.2	2	1	1	3	3	2	0	Plant	protein	of	unknown	function	(DUF641)
DASH_Spc19	PF08287.11	gi|529078480|ref|YP_008377483.1|	-	4.2	7.2	18.0	12	5.7	18.0	1.7	1	0	0	1	1	1	0	Spc19
HAUS-augmin3	PF14932.6	gi|529078480|ref|YP_008377483.1|	-	4.5	6.8	16.2	18	4.8	16.2	1.9	1	1	0	1	1	1	0	HAUS	augmin-like	complex	subunit	3
TMPIT	PF07851.13	gi|529078480|ref|YP_008377483.1|	-	4.5	6.4	8.1	2.4	7.3	1.4	2.1	1	1	1	2	2	2	0	TMPIT-like	protein
TSNAXIP1_N	PF15739.5	gi|529078480|ref|YP_008377483.1|	-	5.9	7.3	17.0	0.75	10.2	6.7	2.8	3	0	0	3	3	2	0	Translin-associated	factor	X-interacting	N-terminus
XhlA	PF10779.9	gi|529078480|ref|YP_008377483.1|	-	6	7.2	14.6	4.1	7.7	5.3	2.8	1	1	1	2	2	2	0	Haemolysin	XhlA
ATG16	PF08614.11	gi|529078480|ref|YP_008377483.1|	-	6.2	7.0	24.3	1e+02	3.0	24.1	2.6	1	1	1	2	2	2	0	Autophagy	protein	16	(ATG16)
Spc7	PF08317.11	gi|529078480|ref|YP_008377483.1|	-	6.9	5.5	23.6	0.16	10.8	16.1	1.9	2	1	0	2	2	1	0	Spc7	kinetochore	protein
CENP-F_leu_zip	PF10473.9	gi|529078480|ref|YP_008377483.1|	-	6.9	6.7	32.8	0.018	15.1	21.0	2.5	3	0	0	3	3	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
AAA_11	PF13086.6	gi|529078480|ref|YP_008377483.1|	-	7.3	6.3	8.7	6.3	6.5	6.5	2.0	2	0	0	2	2	2	0	AAA	domain
GAS	PF13851.6	gi|529078480|ref|YP_008377483.1|	-	7.8	5.8	19.2	1.9	7.8	15.1	2.1	2	0	0	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
FlaC_arch	PF05377.11	gi|529078480|ref|YP_008377483.1|	-	9	6.8	8.5	20	5.6	1.3	3.0	1	1	1	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
TMF_DNA_bd	PF12329.8	gi|529078480|ref|YP_008377483.1|	-	9.4	6.3	25.6	1.4	9.0	15.2	3.0	2	1	0	3	3	2	0	TATA	element	modulatory	factor	1	DNA	binding
MAD	PF05557.13	gi|529078480|ref|YP_008377483.1|	-	9.6	4.4	25.9	1.5	7.1	20.6	2.2	2	1	1	3	3	3	0	Mitotic	checkpoint	protein
SurA_N_2	PF13623.6	gi|529078482|ref|YP_008377485.1|	-	0.12	12.2	0.0	0.12	12.2	0.0	1.0	1	0	0	1	1	1	0	SurA	N-terminal	domain
TGT	PF01702.18	gi|529078483|ref|YP_008377486.1|	-	3e-80	270.0	0.0	3.8e-80	269.7	0.0	1.1	1	0	0	1	1	1	1	Queuine	tRNA-ribosyltransferase
TGT_C1	PF14809.6	gi|529078483|ref|YP_008377486.1|	-	0.058	13.7	0.1	1.6	9.1	0.0	2.3	2	0	0	2	2	2	0	C1	domain	of	tRNA-guanine	transglycosylase	dimerisation
Ribosomal_S28e	PF01200.18	gi|529078483|ref|YP_008377486.1|	-	0.12	12.4	0.0	0.22	11.5	0.0	1.4	1	0	0	1	1	1	0	Ribosomal	protein	S28e
DUF5591	PF17884.1	gi|529078484|ref|YP_008377487.1|	-	8e-59	197.9	0.2	1.2e-58	197.3	0.2	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5591)
TGT_C2	PF14810.6	gi|529078484|ref|YP_008377487.1|	-	9.8e-21	73.7	0.0	2.5e-20	72.4	0.0	1.7	1	0	0	1	1	1	1	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
TGT	PF01702.18	gi|529078484|ref|YP_008377487.1|	-	6.9e-16	58.3	0.0	3.9e-15	55.8	0.0	2.1	2	1	0	2	2	2	1	Queuine	tRNA-ribosyltransferase
PUA	PF01472.20	gi|529078484|ref|YP_008377487.1|	-	5.5e-11	42.3	0.1	1.7e-10	40.7	0.1	1.8	1	0	0	1	1	1	1	PUA	domain
VanZ	PF04892.12	gi|529078485|ref|YP_008377488.1|	-	9.3e-07	29.6	3.5	2.6e-06	28.1	2.7	1.9	1	1	0	1	1	1	1	VanZ	like	family
DUF2924	PF11149.8	gi|529078487|ref|YP_008377490.1|	-	0.029	14.8	0.8	0.031	14.7	0.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2924)
Radical_SAM	PF04055.21	gi|529078488|ref|YP_008377491.1|	-	0.00022	21.6	0.1	0.00046	20.6	0.1	1.6	1	0	0	1	1	1	1	Radical	SAM	superfamily
Phage_holin_3_6	PF07332.11	gi|529078489|ref|YP_008377492.1|	-	0.0087	16.1	5.8	0.011	15.8	5.8	1.1	1	0	0	1	1	1	1	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
SfLAP	PF11139.8	gi|529078489|ref|YP_008377492.1|	-	0.041	13.3	3.8	0.046	13.1	3.8	1.0	1	0	0	1	1	1	0	Sap,	sulfolipid-1-addressing	protein
MFS_2	PF13347.6	gi|529078489|ref|YP_008377492.1|	-	0.097	11.2	1.5	0.1	11.1	1.5	1.0	1	0	0	1	1	1	0	MFS/sugar	transport	protein
DUF4921	PF16268.5	gi|529078491|ref|YP_008377494.1|	-	0.0045	15.9	0.3	0.0077	15.1	0.1	1.4	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4921)
HIT	PF01230.23	gi|529078492|ref|YP_008377495.1|	-	2.7e-22	79.3	0.2	3.9e-22	78.8	0.2	1.2	1	0	0	1	1	1	1	HIT	domain
DcpS_C	PF11969.8	gi|529078492|ref|YP_008377495.1|	-	1.2e-09	38.7	0.0	1.5e-09	38.3	0.0	1.1	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.15	gi|529078492|ref|YP_008377495.1|	-	0.055	13.3	0.1	0.12	12.2	0.1	1.6	1	1	0	1	1	1	0	Protein	similar	to	CwfJ	C-terminus	1
TFIIB	PF00382.19	gi|529078493|ref|YP_008377496.1|	-	9.4e-31	105.7	0.5	1.1e-15	57.4	0.0	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|529078493|ref|YP_008377496.1|	-	3.4e-08	32.9	0.1	6.1e-08	32.1	0.1	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
RB_B	PF01857.20	gi|529078493|ref|YP_008377496.1|	-	0.0086	16.1	0.0	0.015	15.3	0.0	1.4	1	0	0	1	1	1	1	Retinoblastoma-associated	protein	B	domain
Cyclin_C	PF02984.19	gi|529078493|ref|YP_008377496.1|	-	0.041	14.0	0.0	6.1	7.0	0.0	2.2	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
HTH_3	PF01381.22	gi|529078493|ref|YP_008377496.1|	-	0.091	12.8	0.0	0.26	11.4	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix
TetR_N	PF00440.23	gi|529078493|ref|YP_008377496.1|	-	1.4	8.7	3.6	6.7	6.6	0.2	2.6	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	tetR	family
MCM	PF00493.23	gi|529078494|ref|YP_008377497.1|	-	4.1e-74	248.5	0.1	1.7e-27	96.0	0.0	4.2	4	0	0	4	4	4	4	MCM	P-loop	domain
Intein_splicing	PF14890.6	gi|529078494|ref|YP_008377497.1|	-	1.6e-55	186.7	0.0	1.3e-21	76.9	0.0	3.5	3	0	0	3	3	3	3	Intein	splicing	domain
MCM_OB	PF17207.3	gi|529078494|ref|YP_008377497.1|	-	4.7e-36	123.4	0.2	1e-35	122.3	0.2	1.6	1	0	0	1	1	1	1	MCM	OB	domain
LAGLIDADG_3	PF14528.6	gi|529078494|ref|YP_008377497.1|	-	1.3e-32	112.0	0.1	5e-14	52.4	0.1	4.6	4	0	0	4	4	4	4	LAGLIDADG-like	domain
MCM_lid	PF17855.1	gi|529078494|ref|YP_008377497.1|	-	9e-27	93.3	0.3	2.7e-26	91.8	0.3	1.9	1	0	0	1	1	1	1	MCM	AAA-lid	domain
HTH_3	PF01381.22	gi|529078494|ref|YP_008377497.1|	-	5.3e-18	64.8	0.3	1.8e-07	31.1	0.0	4.4	4	0	0	4	4	4	2	Helix-turn-helix
MCM_N	PF14551.6	gi|529078494|ref|YP_008377497.1|	-	1e-07	32.5	1.7	5e-07	30.3	1.7	2.2	1	0	0	1	1	1	1	MCM	N-terminal	domain
HTH_19	PF12844.7	gi|529078494|ref|YP_008377497.1|	-	7.4e-07	29.1	1.1	0.0065	16.5	0.0	4.3	5	0	0	5	5	5	2	Helix-turn-helix	domain
HTH_31	PF13560.6	gi|529078494|ref|YP_008377497.1|	-	3.7e-06	27.2	32.2	2.4e-05	24.6	1.4	6.4	6	0	0	6	6	5	2	Helix-turn-helix	domain
Hint	PF01079.20	gi|529078494|ref|YP_008377497.1|	-	1.7e-05	24.5	0.0	0.033	13.7	0.0	3.1	3	0	0	3	3	3	2	Hint	module
LAGLIDADG_WhiA	PF14527.6	gi|529078494|ref|YP_008377497.1|	-	0.00029	20.8	0.0	0.037	14.1	0.0	3.4	3	0	0	3	3	3	1	WhiA	LAGLIDADG-like	domain
Hom_end	PF05204.14	gi|529078494|ref|YP_008377497.1|	-	0.0014	18.7	0.3	0.022	14.9	0.1	2.8	3	0	0	3	3	3	1	Homing	endonuclease
Mg_chelatase	PF01078.21	gi|529078494|ref|YP_008377497.1|	-	0.075	12.4	0.0	15	4.9	0.0	3.0	3	0	0	3	3	3	0	Magnesium	chelatase,	subunit	ChlI
Importin_rep_2	PF18786.1	gi|529078494|ref|YP_008377497.1|	-	0.19	11.6	0.1	0.52	10.2	0.1	1.7	1	0	0	1	1	1	0	Importin	13	repeat
HTH_37	PF13744.6	gi|529078494|ref|YP_008377497.1|	-	0.78	9.7	3.3	13	5.9	0.0	3.7	3	0	0	3	3	3	0	Helix-turn-helix	domain
Abhydrolase_1	PF00561.20	gi|529078495|ref|YP_008377498.1|	-	4.2e-19	69.2	0.0	7.1e-19	68.5	0.0	1.4	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|529078495|ref|YP_008377498.1|	-	5.3e-10	39.0	0.0	8e-09	35.1	0.0	2.2	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
PhaC_N	PF07167.13	gi|529078495|ref|YP_008377498.1|	-	9.1e-10	38.4	0.0	1.6e-09	37.6	0.0	1.4	1	0	0	1	1	1	1	Poly-beta-hydroxybutyrate	polymerase	(PhaC)	N-terminus
DUF3141	PF11339.8	gi|529078495|ref|YP_008377498.1|	-	1.5e-09	36.9	0.0	4.5e-07	28.7	0.2	2.2	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF3141)
HHH_5	PF14520.6	gi|529078495|ref|YP_008377498.1|	-	1.2e-07	32.3	0.0	2.5e-07	31.2	0.0	1.5	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
DLH	PF01738.18	gi|529078495|ref|YP_008377498.1|	-	1.6e-07	31.1	0.1	0.0013	18.3	0.0	3.1	3	0	0	3	3	3	2	Dienelactone	hydrolase	family
Cdd1	PF11731.8	gi|529078495|ref|YP_008377498.1|	-	0.00012	22.2	0.0	0.00042	20.5	0.0	1.8	2	0	0	2	2	2	1	Pathogenicity	locus
PHB_depo_C	PF06850.11	gi|529078495|ref|YP_008377498.1|	-	0.00027	20.5	0.0	0.00046	19.7	0.0	1.4	1	0	0	1	1	1	1	PHB	de-polymerase	C-terminus
DUF4332	PF14229.6	gi|529078495|ref|YP_008377498.1|	-	0.00056	20.1	0.0	0.001	19.3	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4332)
DNA_pol_lambd_f	PF10391.9	gi|529078495|ref|YP_008377498.1|	-	0.0011	18.7	0.0	0.0028	17.4	0.0	1.7	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
FSH1	PF03959.13	gi|529078495|ref|YP_008377498.1|	-	0.0042	16.8	0.0	0.017	14.8	0.0	1.8	2	0	0	2	2	2	1	Serine	hydrolase	(FSH1)
BAF	PF02961.14	gi|529078495|ref|YP_008377498.1|	-	0.043	14.3	0.0	0.11	13.0	0.0	1.6	1	0	0	1	1	1	0	Barrier	to	autointegration	factor
PHA_synth_III_E	PF09712.10	gi|529078496|ref|YP_008377499.1|	-	1.2e-11	44.3	6.5	6e-10	38.7	0.2	2.0	1	1	1	2	2	2	2	Poly(R)-hydroxyalkanoic	acid	synthase	subunit	(PHA_synth_III_E)
BMFP	PF04380.13	gi|529078496|ref|YP_008377499.1|	-	0.00035	21.0	4.9	0.001	19.5	1.7	2.5	2	0	0	2	2	2	1	Membrane	fusogenic	activity
TolA_bind_tri	PF16331.5	gi|529078496|ref|YP_008377499.1|	-	0.00095	19.2	1.6	0.00095	19.2	1.6	1.9	2	0	0	2	2	2	1	TolA	binding	protein	trimerisation
Phasin	PF05597.11	gi|529078496|ref|YP_008377499.1|	-	0.0061	16.6	0.8	0.0061	16.6	0.8	2.4	1	1	1	2	2	2	1	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
Spore_III_AB	PF09548.10	gi|529078496|ref|YP_008377499.1|	-	0.61	10.2	7.2	1.5	9.0	1.2	2.4	1	1	1	2	2	2	0	Stage	III	sporulation	protein	AB	(spore_III_AB)
Apolipoprotein	PF01442.18	gi|529078497|ref|YP_008377500.1|	-	0.00016	21.6	19.0	0.028	14.3	8.8	2.4	1	1	1	2	2	2	2	Apolipoprotein	A1/A4/E	domain
FlxA	PF14282.6	gi|529078497|ref|YP_008377500.1|	-	0.00058	19.8	3.6	0.00058	19.8	3.6	2.1	2	0	0	2	2	2	1	FlxA-like	protein
NPV_P10	PF05531.12	gi|529078497|ref|YP_008377500.1|	-	0.002	18.6	11.7	0.04	14.4	3.7	3.8	1	1	3	4	4	4	1	Nucleopolyhedrovirus	P10	protein
Baculo_PEP_C	PF04513.12	gi|529078497|ref|YP_008377500.1|	-	0.0061	16.6	5.8	0.97	9.5	0.0	2.8	1	1	2	3	3	3	3	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
FlaC_arch	PF05377.11	gi|529078497|ref|YP_008377500.1|	-	0.012	16.0	11.0	1.1	9.7	2.2	4.1	1	1	3	4	4	4	0	Flagella	accessory	protein	C	(FlaC)
UPF0449	PF15136.6	gi|529078497|ref|YP_008377500.1|	-	0.012	16.1	2.3	0.012	16.1	2.3	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0449
Filament	PF00038.21	gi|529078497|ref|YP_008377500.1|	-	0.018	14.6	13.5	0.023	14.3	13.5	1.0	1	0	0	1	1	1	0	Intermediate	filament	protein
Paxillin	PF03535.13	gi|529078497|ref|YP_008377500.1|	-	0.036	14.0	1.1	0.046	13.6	0.1	1.7	2	0	0	2	2	2	0	Paxillin	family
ApoLp-III	PF07464.11	gi|529078497|ref|YP_008377500.1|	-	0.036	14.2	14.1	0.2	11.7	3.4	2.5	1	1	1	2	2	2	0	Apolipophorin-III	precursor	(apoLp-III)
COG5	PF10392.9	gi|529078497|ref|YP_008377500.1|	-	0.042	14.0	2.9	2.6	8.2	0.7	3.0	1	1	2	3	3	3	0	Golgi	transport	complex	subunit	5
Rab5-bind	PF09311.11	gi|529078497|ref|YP_008377500.1|	-	0.068	12.6	13.5	0.59	9.5	4.7	2.2	2	0	0	2	2	2	0	Rabaptin-like	protein
DUF1664	PF07889.12	gi|529078497|ref|YP_008377500.1|	-	0.11	12.6	8.6	0.97	9.5	2.8	2.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
P35	PF02331.15	gi|529078497|ref|YP_008377500.1|	-	0.12	11.7	0.0	0.17	11.2	0.0	1.2	1	0	0	1	1	1	0	Apoptosis	preventing	protein
DUF812	PF05667.11	gi|529078497|ref|YP_008377500.1|	-	0.12	11.2	9.3	0.15	10.9	9.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
SKA1	PF07160.12	gi|529078497|ref|YP_008377500.1|	-	0.13	12.0	6.3	2.7	7.8	0.0	2.9	1	1	1	2	2	2	0	Spindle	and	kinetochore-associated	protein	1
Spc7	PF08317.11	gi|529078497|ref|YP_008377500.1|	-	0.14	11.0	12.2	0.05	12.5	9.5	1.7	1	1	1	2	2	2	0	Spc7	kinetochore	protein
Muted	PF14942.6	gi|529078497|ref|YP_008377500.1|	-	0.2	12.0	6.1	0.48	10.8	1.0	2.2	2	0	0	2	2	2	0	Organelle	biogenesis,	Muted-like	protein
DASH_Dam1	PF08653.10	gi|529078497|ref|YP_008377500.1|	-	0.25	11.2	2.8	15	5.5	0.3	2.8	2	1	1	3	3	2	0	DASH	complex	subunit	Dam1
Sec34	PF04136.15	gi|529078497|ref|YP_008377500.1|	-	0.3	11.0	4.4	0.63	9.9	1.1	2.6	1	1	2	3	3	3	0	Sec34-like	family
T4_neck-protein	PF11649.8	gi|529078497|ref|YP_008377500.1|	-	0.32	10.3	4.4	9.8	5.4	0.0	2.2	2	0	0	2	2	2	0	Virus	neck	protein
YtxH	PF12732.7	gi|529078497|ref|YP_008377500.1|	-	0.33	11.5	8.6	50	4.5	8.6	3.1	1	1	0	1	1	1	0	YtxH-like	protein
ZapB	PF06005.12	gi|529078497|ref|YP_008377500.1|	-	0.39	11.2	14.6	2.4	8.7	7.1	3.8	3	2	0	3	3	3	0	Cell	division	protein	ZapB
ALMT	PF11744.8	gi|529078497|ref|YP_008377500.1|	-	0.42	9.4	3.5	0.55	9.0	3.5	1.1	1	0	0	1	1	1	0	Aluminium	activated	malate	transporter
Prominin	PF05478.11	gi|529078497|ref|YP_008377500.1|	-	0.6	8.0	4.6	0.7	7.8	1.3	1.8	1	1	1	2	2	2	0	Prominin
YabA	PF06156.13	gi|529078497|ref|YP_008377500.1|	-	0.66	10.6	6.3	2.4	8.8	1.0	3.2	1	1	2	3	3	2	0	Initiation	control	protein	YabA
Cytochrom_B562	PF07361.11	gi|529078497|ref|YP_008377500.1|	-	0.77	10.5	8.5	0.27	11.9	3.8	2.3	1	1	2	3	3	3	0	Cytochrome	b562
DUF848	PF05852.11	gi|529078497|ref|YP_008377500.1|	-	0.79	9.8	13.2	0.21	11.7	5.0	2.3	1	1	1	2	2	2	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
COG2	PF06148.11	gi|529078497|ref|YP_008377500.1|	-	1.3	9.2	10.4	1.7	8.7	1.5	3.4	1	1	3	4	4	4	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Syntaxin-6_N	PF09177.11	gi|529078497|ref|YP_008377500.1|	-	1.3	9.6	9.1	10	6.8	0.5	2.8	1	1	2	3	3	3	0	Syntaxin	6,	N-terminal
DUF4559	PF15112.6	gi|529078497|ref|YP_008377500.1|	-	1.5	8.4	8.9	2.7	7.6	8.9	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4559)
DUF948	PF06103.11	gi|529078497|ref|YP_008377500.1|	-	1.5	9.1	6.9	1.6	9.1	3.1	2.6	1	1	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF1993	PF09351.10	gi|529078497|ref|YP_008377500.1|	-	2	8.5	7.5	11	6.1	0.4	2.8	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF1993)
Snapin_Pallidin	PF14712.6	gi|529078497|ref|YP_008377500.1|	-	2.1	8.8	9.2	3.6	8.1	1.8	3.3	3	1	0	3	3	3	0	Snapin/Pallidin
Spectrin	PF00435.21	gi|529078497|ref|YP_008377500.1|	-	2.4	8.7	13.0	1.2	9.7	5.2	2.9	1	1	0	2	2	2	0	Spectrin	repeat
LPP	PF04728.13	gi|529078497|ref|YP_008377500.1|	-	3.3	8.2	15.0	0.14	12.6	4.4	3.2	3	1	1	4	4	3	0	Lipoprotein	leucine-zipper
TMPIT	PF07851.13	gi|529078497|ref|YP_008377500.1|	-	3.6	6.7	5.3	1.3	8.2	1.6	1.7	1	1	1	2	2	2	0	TMPIT-like	protein
DHR10	PF18595.1	gi|529078497|ref|YP_008377500.1|	-	4.4	7.4	16.7	0.058	13.5	7.8	2.1	2	1	0	2	2	2	0	Designed	helical	repeat	protein	10	domain
Sas10_Utp3	PF04000.15	gi|529078497|ref|YP_008377500.1|	-	7.7	7.2	7.8	10	6.9	0.5	3.4	1	1	2	3	3	3	0	Sas10/Utp3/C1D	family
Cnn_1N	PF07989.11	gi|529078497|ref|YP_008377500.1|	-	8.4	6.6	7.2	2.2	8.5	1.4	2.6	2	1	1	3	3	2	0	Centrosomin	N-terminal	motif	1
AbrB-like	PF14250.6	gi|529078498|ref|YP_008377501.1|	-	0.0074	16.4	0.0	0.0092	16.1	0.0	1.3	1	0	0	1	1	1	1	AbrB-like	transcriptional	regulator
TMP_2	PF06791.13	gi|529078498|ref|YP_008377501.1|	-	0.013	15.2	0.5	0.015	15.0	0.5	1.1	1	0	0	1	1	1	0	Prophage	tail	length	tape	measure	protein
MaoC_dehydratas	PF01575.19	gi|529078500|ref|YP_008377503.1|	-	2.7e-22	78.6	0.0	3.4e-22	78.3	0.0	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|529078500|ref|YP_008377503.1|	-	4.2e-09	36.6	0.0	1.7e-08	34.7	0.0	2.0	1	1	1	2	2	2	1	N-terminal	half	of	MaoC	dehydratase
4HBT	PF03061.22	gi|529078500|ref|YP_008377503.1|	-	0.0023	18.3	0.1	0.0069	16.7	0.1	1.8	2	0	0	2	2	2	1	Thioesterase	superfamily
CGI-121	PF08617.10	gi|529078501|ref|YP_008377504.1|	-	1.7e-09	38.0	0.0	2e-09	37.8	0.0	1.1	1	0	0	1	1	1	1	Kinase	binding	protein	CGI-121
DEAD	PF00270.29	gi|529078502|ref|YP_008377505.1|	-	6e-22	78.2	0.0	1.2e-21	77.3	0.0	1.5	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|529078502|ref|YP_008377505.1|	-	3.8e-07	30.4	0.0	3.5e-06	27.3	0.0	2.3	1	1	0	1	1	1	1	Helicase	conserved	C-terminal	domain
HHH_5	PF14520.6	gi|529078502|ref|YP_008377505.1|	-	6.5e-06	26.7	0.2	2.4e-05	24.8	0.2	2.1	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
ResIII	PF04851.15	gi|529078502|ref|YP_008377505.1|	-	4.1e-05	23.7	0.0	8.3e-05	22.7	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DNA_pol_lambd_f	PF10391.9	gi|529078502|ref|YP_008377505.1|	-	6.2e-05	22.7	0.0	0.00022	21.0	0.0	1.9	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
Lipase_chap	PF03280.14	gi|529078502|ref|YP_008377505.1|	-	0.29	11.1	2.4	0.61	10.0	2.4	1.5	1	0	0	1	1	1	0	Proteobacterial	lipase	chaperone	protein
Fer4_15	PF13459.6	gi|529078503|ref|YP_008377506.1|	-	1.8e-20	73.4	4.4	2.1e-20	73.2	4.4	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|529078503|ref|YP_008377506.1|	-	5.6e-09	36.4	0.5	9.1e-09	35.7	0.5	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4	PF00037.27	gi|529078503|ref|YP_008377506.1|	-	0.071	13.0	1.0	2.8	7.9	0.1	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_19	PF06902.11	gi|529078503|ref|YP_008377506.1|	-	0.084	13.0	0.1	0.62	10.2	0.1	2.0	1	1	0	1	1	1	0	Divergent	4Fe-4S	mono-cluster
Fer4_6	PF12837.7	gi|529078503|ref|YP_008377506.1|	-	0.11	12.6	1.0	2.2	8.5	0.1	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
OHCU_decarbox	PF09349.10	gi|529078504|ref|YP_008377507.1|	-	0.028	14.9	0.0	0.042	14.3	0.0	1.3	1	1	0	1	1	1	0	OHCU	decarboxylase
PIN	PF01850.21	gi|529078505|ref|YP_008377508.1|	-	3.9e-05	24.1	0.3	4.5e-05	23.9	0.3	1.2	1	0	0	1	1	1	1	PIN	domain
TPR_14	PF13428.6	gi|529078505|ref|YP_008377508.1|	-	0.0073	17.0	0.1	6.8	7.8	0.1	2.4	1	1	1	2	2	2	2	Tetratricopeptide	repeat
CdiA_C_tRNase	PF18664.1	gi|529078505|ref|YP_008377508.1|	-	0.074	13.2	0.0	0.084	13.1	0.0	1.2	1	0	0	1	1	1	0	CdiA	C-terminal	tRNase	domain
PGI	PF00342.19	gi|529078506|ref|YP_008377509.1|	-	7.8e-27	94.0	0.0	4.4e-23	81.6	0.0	2.1	2	0	0	2	2	2	2	Phosphoglucose	isomerase
SBP_bac_8	PF13416.6	gi|529078507|ref|YP_008377510.1|	-	2.5e-20	73.5	0.0	3.2e-20	73.1	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|529078507|ref|YP_008377510.1|	-	1.2e-10	41.9	0.0	2e-10	41.2	0.0	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
ACT	PF01842.25	gi|529078508|ref|YP_008377511.1|	-	0.00024	20.8	1.4	0.00049	19.8	0.4	2.1	2	1	0	2	2	2	1	ACT	domain
ACT_7	PF13840.6	gi|529078508|ref|YP_008377511.1|	-	0.00084	19.1	0.1	0.0027	17.5	0.0	1.8	2	0	0	2	2	2	1	ACT	domain
ACT_4	PF13291.6	gi|529078508|ref|YP_008377511.1|	-	0.0019	18.8	0.1	0.0097	16.5	0.1	2.0	2	0	0	2	2	2	1	ACT	domain
IGPD	PF00475.18	gi|529078509|ref|YP_008377512.1|	-	3e-61	206.0	2.2	3e-61	206.0	2.2	1.4	2	0	0	2	2	2	1	Imidazoleglycerol-phosphate	dehydratase
MFS_1	PF07690.16	gi|529078510|ref|YP_008377513.1|	-	5.6e-25	88.0	67.4	3.3e-23	82.2	39.1	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
His_biosynth	PF00977.21	gi|529078511|ref|YP_008377514.1|	-	2.7e-73	246.2	5.2	3.1e-73	246.0	5.2	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Dus	PF01207.17	gi|529078511|ref|YP_008377514.1|	-	2.7e-12	46.4	0.3	2.5e-06	26.8	0.0	2.1	2	0	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
DHO_dh	PF01180.21	gi|529078511|ref|YP_008377514.1|	-	7e-10	38.6	1.6	4.1e-06	26.2	0.3	2.1	2	0	0	2	2	2	2	Dihydroorotate	dehydrogenase
ThiG	PF05690.14	gi|529078511|ref|YP_008377514.1|	-	4.2e-07	29.5	5.8	0.00033	20.0	0.2	2.1	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
NMO	PF03060.15	gi|529078511|ref|YP_008377514.1|	-	5.3e-07	29.3	12.8	9e-07	28.6	4.1	2.1	1	1	0	2	2	2	2	Nitronate	monooxygenase
PcrB	PF01884.17	gi|529078511|ref|YP_008377514.1|	-	8.3e-07	28.7	4.7	0.00033	20.2	0.2	2.1	2	0	0	2	2	2	2	PcrB	family
IMPDH	PF00478.25	gi|529078511|ref|YP_008377514.1|	-	1e-06	28.0	5.9	0.0066	15.5	0.5	2.3	2	0	0	2	2	2	2	IMP	dehydrogenase	/	GMP	reductase	domain
IGPS	PF00218.21	gi|529078511|ref|YP_008377514.1|	-	2.7e-06	26.7	0.3	0.0061	15.8	0.0	3.1	2	1	0	3	3	3	2	Indole-3-glycerol	phosphate	synthase
G3P_antiterm	PF04309.12	gi|529078511|ref|YP_008377514.1|	-	4.6e-06	26.2	1.1	0.0053	16.2	0.1	2.2	2	0	0	2	2	2	2	Glycerol-3-phosphate	responsive	antiterminator
Trp_syntA	PF00290.20	gi|529078511|ref|YP_008377514.1|	-	1.1e-05	24.5	2.0	0.036	12.9	0.4	2.2	2	0	0	2	2	2	2	Tryptophan	synthase	alpha	chain
NanE	PF04131.14	gi|529078511|ref|YP_008377514.1|	-	6.9e-05	22.1	1.4	0.058	12.6	0.3	2.3	2	0	0	2	2	2	2	Putative	N-acetylmannosamine-6-phosphate	epimerase
TMP-TENI	PF02581.17	gi|529078511|ref|YP_008377514.1|	-	0.00035	20.0	2.5	0.026	13.9	0.4	2.2	2	0	0	2	2	2	2	Thiamine	monophosphate	synthase
FMN_dh	PF01070.18	gi|529078511|ref|YP_008377514.1|	-	0.00067	18.8	9.6	0.042	12.9	0.6	2.1	2	0	0	2	2	2	2	FMN-dependent	dehydrogenase
Ribul_P_3_epim	PF00834.19	gi|529078511|ref|YP_008377514.1|	-	0.022	14.2	3.1	0.69	9.3	0.3	2.3	2	0	0	2	2	2	0	Ribulose-phosphate	3	epimerase	family
DNA_pol_lambd_f	PF10391.9	gi|529078511|ref|YP_008377514.1|	-	0.07	13.0	0.0	13	5.7	0.0	3.1	3	0	0	3	3	3	0	Fingers	domain	of	DNA	polymerase	lambda
QRPTase_C	PF01729.19	gi|529078511|ref|YP_008377514.1|	-	0.13	12.1	0.7	8.6	6.1	0.1	2.2	2	0	0	2	2	2	0	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
Radical_SAM	PF04055.21	gi|529078511|ref|YP_008377514.1|	-	0.16	12.3	0.2	1.9	8.9	0.2	2.5	1	1	1	2	2	2	0	Radical	SAM	superfamily
Cpn60_TCP1	PF00118.24	gi|529078512|ref|YP_008377515.1|	-	6.1e-155	516.6	7.3	6.9e-155	516.4	7.3	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
TrmB	PF01978.19	gi|529078514|ref|YP_008377517.1|	-	0.00074	19.4	0.0	0.0012	18.7	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|529078514|ref|YP_008377517.1|	-	0.0014	18.4	0.7	0.0014	18.4	0.7	1.6	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|529078514|ref|YP_008377517.1|	-	0.002	18.1	0.6	0.002	18.1	0.6	1.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|529078514|ref|YP_008377517.1|	-	0.0092	15.9	2.1	0.011	15.6	1.1	1.7	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.6	gi|529078514|ref|YP_008377517.1|	-	0.011	15.2	0.1	0.019	14.5	0.1	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.6	gi|529078514|ref|YP_008377517.1|	-	0.013	16.0	0.3	0.035	14.6	0.2	1.7	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
Phage_rep_org_N	PF09681.10	gi|529078514|ref|YP_008377517.1|	-	0.067	13.1	0.0	0.092	12.7	0.0	1.2	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
HTH_15	PF12324.8	gi|529078514|ref|YP_008377517.1|	-	0.075	13.0	0.1	0.15	12.1	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	alkylmercury	lyase
Rubrerythrin	PF02915.17	gi|529078515|ref|YP_008377518.1|	-	2.6e-06	27.9	4.2	4.3e-05	23.9	0.4	2.6	2	1	1	3	3	3	2	Rubrerythrin
Ferritin	PF00210.24	gi|529078515|ref|YP_008377518.1|	-	0.47	10.4	5.4	0.79	9.7	2.6	2.4	1	1	2	3	3	3	0	Ferritin-like	domain
DUF3813	PF12758.7	gi|529078515|ref|YP_008377518.1|	-	1.7	9.0	5.6	17	5.8	0.3	2.8	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3813)
ATPase	PF06745.13	gi|529078516|ref|YP_008377519.1|	-	1e-10	41.4	0.0	6.3e-05	22.4	0.1	2.1	2	0	0	2	2	2	2	KaiC
AAA_25	PF13481.6	gi|529078516|ref|YP_008377519.1|	-	0.0023	17.5	0.5	0.2	11.2	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
Rad51	PF08423.11	gi|529078516|ref|YP_008377519.1|	-	0.025	13.9	0.0	0.74	9.0	0.0	2.8	2	1	1	3	3	3	0	Rad51
DUF2777	PF10949.8	gi|529078516|ref|YP_008377519.1|	-	0.13	11.9	0.0	0.45	10.1	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2777)
DUF294_C	PF10335.9	gi|529078517|ref|YP_008377520.1|	-	0.00015	21.6	0.3	0.0097	15.7	0.0	2.4	2	0	0	2	2	2	1	Putative	nucleotidyltransferase	substrate	binding	domain
LUC7	PF03194.15	gi|529078517|ref|YP_008377520.1|	-	0.00016	21.5	1.4	0.00023	20.9	1.4	1.2	1	0	0	1	1	1	1	LUC7	N_terminus
Baculo_PEP_C	PF04513.12	gi|529078517|ref|YP_008377520.1|	-	0.0018	18.3	4.4	0.069	13.2	1.9	2.4	1	1	1	2	2	2	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF16	PF01519.16	gi|529078517|ref|YP_008377520.1|	-	0.0026	18.2	2.4	0.097	13.2	0.1	2.3	1	1	1	2	2	2	2	Protein	of	unknown	function	DUF16
ABC_tran_CTD	PF16326.5	gi|529078517|ref|YP_008377520.1|	-	0.0099	16.1	4.4	0.16	12.3	0.4	3.2	2	1	1	3	3	3	1	ABC	transporter	C-terminal	domain
HSBP1	PF06825.12	gi|529078517|ref|YP_008377520.1|	-	0.01	15.7	4.7	0.21	11.4	0.5	3.2	3	0	0	3	3	3	0	Heat	shock	factor	binding	protein	1
Seryl_tRNA_N	PF02403.22	gi|529078517|ref|YP_008377520.1|	-	0.011	16.0	2.1	0.026	14.7	0.9	2.2	1	1	1	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
Zn-ribbon_8	PF09723.10	gi|529078517|ref|YP_008377520.1|	-	0.011	15.8	1.2	0.023	14.8	1.2	1.5	1	0	0	1	1	1	0	Zinc	ribbon	domain
Taxilin	PF09728.9	gi|529078517|ref|YP_008377520.1|	-	0.022	13.9	0.5	1.2	8.3	0.0	2.1	1	1	1	2	2	2	0	Myosin-like	coiled-coil	protein
FANCI_S4	PF14678.6	gi|529078517|ref|YP_008377520.1|	-	0.034	13.3	0.5	0.38	9.8	0.0	2.0	2	0	0	2	2	2	0	FANCI	solenoid	4
Allexi_40kDa	PF05549.11	gi|529078517|ref|YP_008377520.1|	-	0.045	13.3	2.8	0.13	11.8	0.9	2.1	1	1	1	2	2	2	0	Allexivirus	40kDa	protein
Spc7	PF08317.11	gi|529078517|ref|YP_008377520.1|	-	0.059	12.2	6.8	0.97	8.2	6.5	2.1	1	1	0	1	1	1	0	Spc7	kinetochore	protein
MscS_porin	PF12795.7	gi|529078517|ref|YP_008377520.1|	-	0.059	12.9	4.2	0.061	12.9	3.0	1.5	1	1	0	1	1	1	0	Mechanosensitive	ion	channel	porin	domain
DZR	PF12773.7	gi|529078517|ref|YP_008377520.1|	-	0.083	12.9	0.7	0.15	12.1	0.7	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
SKA2	PF16740.5	gi|529078517|ref|YP_008377520.1|	-	0.089	12.6	0.6	1.3	8.8	0.1	2.6	1	1	2	3	3	3	0	Spindle	and	kinetochore-associated	protein	2
AAA_13	PF13166.6	gi|529078517|ref|YP_008377520.1|	-	0.1	11.2	5.3	0.13	10.8	5.3	1.1	1	0	0	1	1	1	0	AAA	domain
Serine_rich	PF08824.10	gi|529078517|ref|YP_008377520.1|	-	0.13	12.3	7.3	0.3	11.1	7.3	1.6	1	1	0	1	1	1	0	Serine	rich	protein	interaction	domain
HrpB7	PF09486.10	gi|529078517|ref|YP_008377520.1|	-	0.34	11.3	30.3	0.041	14.3	18.8	2.4	1	1	1	2	2	2	0	Bacterial	type	III	secretion	protein	(HrpB7)
NPV_P10	PF05531.12	gi|529078517|ref|YP_008377520.1|	-	0.34	11.4	11.6	1.9	9.0	5.1	3.1	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
DUF4088	PF13317.6	gi|529078517|ref|YP_008377520.1|	-	0.56	9.7	9.5	3.2	7.2	2.9	2.2	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF4088)
YkyA	PF10368.9	gi|529078517|ref|YP_008377520.1|	-	0.68	9.6	3.9	0.64	9.7	0.7	2.0	1	1	1	2	2	2	0	Putative	cell-wall	binding	lipoprotein
Nudix_N_2	PF14803.6	gi|529078517|ref|YP_008377520.1|	-	0.92	9.5	5.6	7.4	6.6	0.4	2.4	1	1	1	2	2	2	0	Nudix	N-terminal
TBCC_N	PF16752.5	gi|529078517|ref|YP_008377520.1|	-	0.96	9.9	7.6	1.3	9.5	3.0	2.6	1	1	1	2	2	2	0	Tubulin-specific	chaperone	C	N-terminal	domain
DUF1664	PF07889.12	gi|529078517|ref|YP_008377520.1|	-	1.2	9.2	5.6	7.5	6.6	1.0	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
DUF948	PF06103.11	gi|529078517|ref|YP_008377520.1|	-	1.7	8.9	7.6	4.3	7.7	3.0	2.9	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
EMP24_GP25L	PF01105.24	gi|529078517|ref|YP_008377520.1|	-	2.3	8.1	4.4	1e+02	2.7	4.3	2.4	1	1	0	1	1	1	0	emp24/gp25L/p24	family/GOLD
XhlA	PF10779.9	gi|529078517|ref|YP_008377520.1|	-	2.9	8.1	11.2	11	6.3	0.2	4.4	2	2	2	4	4	4	0	Haemolysin	XhlA
Sipho_Gp157	PF05565.11	gi|529078517|ref|YP_008377520.1|	-	3.6	7.6	8.1	3.5	7.6	1.4	2.3	1	1	0	2	2	2	0	Siphovirus	Gp157
Filament	PF00038.21	gi|529078517|ref|YP_008377520.1|	-	5.1	6.6	11.1	17	4.9	11.1	1.8	1	1	0	1	1	1	0	Intermediate	filament	protein
DUF4795	PF16043.5	gi|529078517|ref|YP_008377520.1|	-	5.2	6.6	11.3	13	5.3	11.3	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4795)
DUF2205	PF10224.9	gi|529078517|ref|YP_008377520.1|	-	7.7	6.6	5.8	27	4.8	0.6	3.5	1	1	2	3	3	3	0	Short	coiled-coil	protein
TFIIS_C	PF01096.18	gi|529078519|ref|YP_008377522.1|	-	2.2e-17	62.6	6.1	4.6e-17	61.6	1.6	2.2	2	0	0	2	2	2	1	Transcription	factor	S-II	(TFIIS)
DNA_RNApol_7kD	PF03604.13	gi|529078519|ref|YP_008377522.1|	-	8.1e-06	25.4	4.9	0.099	12.3	0.3	3.2	3	0	0	3	3	3	3	DNA	directed	RNA	polymerase,	7	kDa	subunit
Zn_Tnp_IS1595	PF12760.7	gi|529078519|ref|YP_008377522.1|	-	1.2e-05	25.1	1.3	0.00049	20.0	0.3	2.2	2	0	0	2	2	2	1	Transposase	zinc-ribbon	domain
RNA_POL_M_15KD	PF02150.16	gi|529078519|ref|YP_008377522.1|	-	0.0027	17.5	6.9	0.0067	16.3	0.3	3.1	3	0	0	3	3	3	1	RNA	polymerases	M/15	Kd	subunit
Rubredoxin_2	PF18073.1	gi|529078519|ref|YP_008377522.1|	-	0.0029	17.3	10.2	0.72	9.6	0.2	3.4	3	0	0	3	3	3	2	Rubredoxin	metal	binding	domain
zf-ribbon_3	PF13248.6	gi|529078519|ref|YP_008377522.1|	-	0.0036	16.7	10.7	0.16	11.4	0.9	3.4	3	0	0	3	3	3	2	zinc-ribbon	domain
DUF2318	PF10080.9	gi|529078519|ref|YP_008377522.1|	-	0.0041	17.2	3.0	3.2	7.9	0.0	3.0	2	1	1	3	3	3	2	Predicted	membrane	protein	(DUF2318)
PhnA_Zn_Ribbon	PF08274.12	gi|529078519|ref|YP_008377522.1|	-	0.0089	16.0	6.9	5.8	7.0	0.3	3.2	3	0	0	3	3	3	0	PhnA	Zinc-Ribbon
zf-piccolo	PF05715.13	gi|529078519|ref|YP_008377522.1|	-	0.011	15.8	4.2	1.5	9.0	0.1	2.9	1	1	2	3	3	3	0	Piccolo	Zn-finger
A2L_zn_ribbon	PF08792.10	gi|529078519|ref|YP_008377522.1|	-	0.011	15.4	7.0	0.57	10.0	0.1	3.3	3	0	0	3	3	3	0	A2L	zinc	ribbon	domain
PHD	PF00628.29	gi|529078519|ref|YP_008377522.1|	-	0.015	15.2	2.6	0.11	12.5	0.4	2.3	2	0	0	2	2	2	0	PHD-finger
PriA_CRR	PF18319.1	gi|529078519|ref|YP_008377522.1|	-	0.02	14.9	0.1	0.02	14.9	0.1	2.6	3	0	0	3	3	3	0	PriA	DNA	helicase	Cys-rich	region	(CRR)	domain
OrfB_Zn_ribbon	PF07282.11	gi|529078519|ref|YP_008377522.1|	-	0.02	14.8	5.6	4.5	7.3	3.0	2.9	2	1	1	3	3	3	0	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.12	gi|529078519|ref|YP_008377522.1|	-	0.033	13.7	10.1	3	7.4	0.1	3.4	3	1	0	3	3	3	0	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.10	gi|529078519|ref|YP_008377522.1|	-	0.044	13.9	9.4	5.5	7.2	1.0	3.3	2	1	0	3	3	3	0	Zinc	ribbon	domain
zinc_ribbon_4	PF13717.6	gi|529078519|ref|YP_008377522.1|	-	0.048	13.6	5.8	0.56	10.2	0.6	3.1	3	0	0	3	3	3	0	zinc-ribbon	domain
ADK_lid	PF05191.14	gi|529078519|ref|YP_008377522.1|	-	0.052	13.5	6.6	3.1	7.9	0.3	3.3	3	0	0	3	3	3	0	Adenylate	kinase,	active	site	lid
Lar_restr_allev	PF14354.6	gi|529078519|ref|YP_008377522.1|	-	0.077	13.4	5.3	5.3	7.5	2.1	2.9	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
LRV_FeS	PF05484.11	gi|529078519|ref|YP_008377522.1|	-	0.084	12.9	3.6	2.8	8.0	0.1	3.1	3	0	0	3	3	3	0	LRV	protein	FeS4	cluster
HypA	PF01155.19	gi|529078519|ref|YP_008377522.1|	-	0.1	12.6	3.2	0.96	9.5	0.4	2.3	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf_C2H2_13	PF18508.1	gi|529078519|ref|YP_008377522.1|	-	0.13	11.9	2.8	9.2	5.9	0.0	3.2	3	0	0	3	3	3	0	Zinc	finger	domain
UPF0547	PF10571.9	gi|529078519|ref|YP_008377522.1|	-	0.15	12.2	10.4	1.2	9.3	1.0	3.3	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
GATA	PF00320.27	gi|529078519|ref|YP_008377522.1|	-	0.26	10.9	4.8	6	6.6	0.0	3.0	3	0	0	3	3	3	0	GATA	zinc	finger
Nudix_N_2	PF14803.6	gi|529078519|ref|YP_008377522.1|	-	0.27	11.2	7.6	25	4.9	0.1	3.2	2	1	1	3	3	3	0	Nudix	N-terminal
zf_UBZ	PF18439.1	gi|529078519|ref|YP_008377522.1|	-	0.29	10.8	7.5	3.3	7.4	0.1	3.2	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
Zn_ribbon_recom	PF13408.6	gi|529078519|ref|YP_008377522.1|	-	0.55	10.8	4.7	12	6.5	0.2	3.0	3	0	0	3	3	3	0	Recombinase	zinc	beta	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|529078519|ref|YP_008377522.1|	-	0.55	10.0	8.9	13	5.6	0.1	3.4	3	0	0	3	3	3	0	zinc-ribbon	domain
zinc_ribbon_13	PF09855.9	gi|529078519|ref|YP_008377522.1|	-	1.1	9.5	4.3	14	5.9	0.1	3.0	3	0	0	3	3	3	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
zinc_ribbon_15	PF17032.5	gi|529078519|ref|YP_008377522.1|	-	1.2	10.0	5.9	21	5.9	5.9	2.2	1	1	0	1	1	1	0	zinc-ribbon	family
Cytochrom_CIII	PF02085.16	gi|529078519|ref|YP_008377522.1|	-	1.2	9.6	5.3	14	6.1	1.6	2.8	1	1	2	3	3	3	0	Class	III	cytochrome	C	family
zf-NADH-PPase	PF09297.11	gi|529078519|ref|YP_008377522.1|	-	1.7	8.4	11.0	1.2	8.8	0.3	3.2	3	0	0	3	3	3	0	NADH	pyrophosphatase	zinc	ribbon	domain
DUF1451	PF07295.11	gi|529078519|ref|YP_008377522.1|	-	2.9	7.9	9.5	3.7	7.6	3.9	2.9	1	1	1	2	2	2	0	Zinc-ribbon	containing	domain
RHH_1	PF01402.21	gi|529078521|ref|YP_008377524.1|	-	6.3e-08	32.3	0.6	1.9e-07	30.8	0.6	1.9	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
VapB_antitoxin	PF09957.9	gi|529078521|ref|YP_008377524.1|	-	0.00034	20.4	1.2	0.00034	20.4	1.2	2.8	3	1	0	3	3	3	1	Bacterial	antitoxin	of	type	II	TA	system,	VapB
DUF1160	PF06648.11	gi|529078521|ref|YP_008377524.1|	-	0.0037	17.3	0.0	0.0044	17.0	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1160)
PSK_trans_fac	PF07704.11	gi|529078521|ref|YP_008377524.1|	-	0.028	15.2	3.2	0.042	14.6	3.2	1.5	1	1	0	1	1	1	0	Rv0623-like	transcription	factor
ABC2_membrane_4	PF12730.7	gi|529078522|ref|YP_008377525.1|	-	0.65	9.9	8.2	0.35	10.8	5.6	1.8	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|529078523|ref|YP_008377526.1|	-	1.9e-25	90.0	0.0	2.6e-25	89.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529078523|ref|YP_008377526.1|	-	2.4e-19	70.3	0.2	5.5e-13	49.4	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|529078523|ref|YP_008377526.1|	-	0.00061	20.1	0.0	0.00092	19.5	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|529078523|ref|YP_008377526.1|	-	0.00085	19.1	0.0	0.0016	18.2	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.6	gi|529078523|ref|YP_008377526.1|	-	0.0069	16.9	0.0	0.011	16.2	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_24	PF13479.6	gi|529078523|ref|YP_008377526.1|	-	0.016	15.0	0.0	1.4	8.6	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.6	gi|529078523|ref|YP_008377526.1|	-	0.078	13.3	0.2	0.19	12.1	0.1	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
SRP54	PF00448.22	gi|529078523|ref|YP_008377526.1|	-	0.15	11.7	0.0	0.26	10.9	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_27	PF13514.6	gi|529078523|ref|YP_008377526.1|	-	0.18	11.4	0.0	0.36	10.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AMMECR1	PF01871.17	gi|529078523|ref|YP_008377526.1|	-	0.18	11.4	0.0	0.29	10.7	0.0	1.2	1	0	0	1	1	1	0	AMMECR1
SMC_N	PF02463.19	gi|529078523|ref|YP_008377526.1|	-	0.2	11.0	0.0	3.2	7.1	0.0	2.0	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
HTH_3	PF01381.22	gi|529078524|ref|YP_008377527.1|	-	4.5e-15	55.4	0.0	5.4e-15	55.2	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|529078524|ref|YP_008377527.1|	-	7.3e-10	39.1	0.1	8.3e-10	38.9	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|529078524|ref|YP_008377527.1|	-	1.1e-06	28.5	0.0	1.3e-06	28.3	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|529078524|ref|YP_008377527.1|	-	0.00021	20.8	0.0	0.00031	20.3	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_25	PF13413.6	gi|529078524|ref|YP_008377527.1|	-	0.0026	17.6	0.1	0.0037	17.1	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|529078524|ref|YP_008377527.1|	-	0.0029	17.4	0.0	0.0047	16.7	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_Crp_2	PF13545.6	gi|529078524|ref|YP_008377527.1|	-	0.0076	16.2	0.1	0.011	15.7	0.1	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_38	PF13936.6	gi|529078524|ref|YP_008377527.1|	-	0.0082	15.9	0.2	0.016	15.0	0.1	1.5	2	0	0	2	2	1	1	Helix-turn-helix	domain
HTH_28	PF13518.6	gi|529078524|ref|YP_008377527.1|	-	0.0095	16.0	0.0	0.014	15.5	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|529078524|ref|YP_008377527.1|	-	0.0098	15.4	0.2	0.014	14.9	0.2	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
YdaS_antitoxin	PF15943.5	gi|529078524|ref|YP_008377527.1|	-	0.011	15.5	0.0	0.012	15.5	0.0	1.2	1	0	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_AsnC-type	PF13404.6	gi|529078524|ref|YP_008377527.1|	-	0.015	15.2	0.2	0.031	14.1	0.1	1.6	1	1	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|529078524|ref|YP_008377527.1|	-	0.016	15.1	0.2	0.022	14.7	0.2	1.2	1	0	0	1	1	1	0	HTH	domain
HTH_37	PF13744.6	gi|529078524|ref|YP_008377527.1|	-	0.031	14.2	0.0	0.048	13.6	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
Pou	PF00157.17	gi|529078524|ref|YP_008377527.1|	-	0.035	14.1	0.1	0.045	13.7	0.1	1.2	1	0	0	1	1	1	0	Pou	domain	-	N-terminal	to	homeobox	domain
HTH_26	PF13443.6	gi|529078524|ref|YP_008377527.1|	-	0.048	14.1	0.0	0.059	13.8	0.0	1.1	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
MerR	PF00376.23	gi|529078524|ref|YP_008377527.1|	-	0.049	13.4	0.1	0.098	12.4	0.1	1.5	1	1	0	1	1	1	0	MerR	family	regulatory	protein
HTH_7	PF02796.15	gi|529078524|ref|YP_008377527.1|	-	0.057	13.5	0.4	0.095	12.8	0.2	1.5	2	0	0	2	2	1	0	Helix-turn-helix	domain	of	resolvase
MarR_2	PF12802.7	gi|529078524|ref|YP_008377527.1|	-	0.06	13.3	0.0	0.089	12.7	0.0	1.3	1	0	0	1	1	1	0	MarR	family
YwiC	PF14256.6	gi|529078525|ref|YP_008377528.1|	-	0.013	15.9	4.7	0.025	14.9	4.8	1.5	1	1	0	1	1	1	0	YwiC-like	protein
MIG-14_Wnt-bd	PF06664.12	gi|529078525|ref|YP_008377528.1|	-	0.023	13.9	0.1	0.026	13.7	0.1	1.1	1	0	0	1	1	1	0	Wnt-binding	factor	required	for	Wnt	secretion
DUF4131	PF13567.6	gi|529078525|ref|YP_008377528.1|	-	0.15	11.7	2.1	0.2	11.3	2.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
CbtB	PF09489.10	gi|529078525|ref|YP_008377528.1|	-	9.5	6.4	7.9	28	4.9	0.2	3.0	3	0	0	3	3	3	0	Probable	cobalt	transporter	subunit	(CbtB)
Copper-bind	PF00127.20	gi|529078526|ref|YP_008377529.1|	-	5.2e-08	33.2	0.1	5.3e-08	33.2	0.1	1.1	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Zip	PF02535.22	gi|529078527|ref|YP_008377530.1|	-	8.9e-06	25.1	4.9	8.9e-06	25.1	4.9	2.3	2	0	0	2	2	2	2	ZIP	Zinc	transporter
Amino_oxidase	PF01593.24	gi|529078528|ref|YP_008377531.1|	-	1.1e-35	123.8	0.1	1.4e-35	123.4	0.1	1.1	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|529078528|ref|YP_008377531.1|	-	3.9e-17	62.3	0.1	9.4e-17	61.0	0.1	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|529078528|ref|YP_008377531.1|	-	8.1e-13	48.7	1.0	4.8e-08	33.0	0.0	2.8	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.6	gi|529078528|ref|YP_008377531.1|	-	5.6e-09	35.7	0.1	0.0029	16.9	0.0	2.5	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.14	gi|529078528|ref|YP_008377531.1|	-	1.2e-07	31.2	3.8	1.5e-05	24.4	0.2	2.4	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|529078528|ref|YP_008377531.1|	-	1.2e-07	30.8	1.4	0.00054	18.8	0.5	2.2	2	0	0	2	2	2	2	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|529078528|ref|YP_008377531.1|	-	2.9e-07	30.2	0.0	5.2e-07	29.4	0.0	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.27	gi|529078528|ref|YP_008377531.1|	-	4.2e-07	30.4	3.4	6e-05	23.5	0.2	2.9	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|529078528|ref|YP_008377531.1|	-	5.1e-07	29.1	1.3	1.9e-06	27.3	1.1	1.8	2	0	0	2	2	2	1	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|529078528|ref|YP_008377531.1|	-	3.7e-06	26.4	0.8	6.9e-06	25.5	0.1	1.7	2	0	0	2	2	2	1	FAD	binding	domain
Thi4	PF01946.17	gi|529078528|ref|YP_008377531.1|	-	2.6e-05	23.6	0.1	0.00036	19.9	0.1	2.4	3	0	0	3	3	3	1	Thi4	family
GIDA	PF01134.22	gi|529078528|ref|YP_008377531.1|	-	0.00021	20.5	0.7	0.00043	19.5	0.7	1.5	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
NAD_binding_9	PF13454.6	gi|529078528|ref|YP_008377531.1|	-	0.00022	21.2	2.6	0.035	14.1	0.1	2.5	2	0	0	2	2	2	2	FAD-NAD(P)-binding
MCRA	PF06100.11	gi|529078528|ref|YP_008377531.1|	-	0.0041	16.0	0.0	0.0072	15.2	0.0	1.4	2	0	0	2	2	2	1	MCRA	family
AlaDh_PNT_C	PF01262.21	gi|529078528|ref|YP_008377531.1|	-	0.012	14.9	3.0	0.021	14.1	0.2	2.1	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Trp_halogenase	PF04820.14	gi|529078528|ref|YP_008377531.1|	-	0.053	12.4	0.9	0.078	11.8	0.2	1.6	2	0	0	2	2	2	0	Tryptophan	halogenase
Lycopene_cycl	PF05834.12	gi|529078528|ref|YP_008377531.1|	-	0.083	11.9	0.3	0.13	11.3	0.3	1.2	1	0	0	1	1	1	0	Lycopene	cyclase	protein
3HCDH_N	PF02737.18	gi|529078528|ref|YP_008377531.1|	-	0.084	12.7	0.1	0.14	12.0	0.1	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|529078528|ref|YP_008377531.1|	-	0.12	12.1	0.4	0.54	9.9	0.2	2.0	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
UbiA	PF01040.18	gi|529078529|ref|YP_008377532.1|	-	5.3e-28	98.0	19.7	7.2e-28	97.5	19.7	1.2	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
Caroten_synth	PF04240.12	gi|529078530|ref|YP_008377533.1|	-	2.3e-61	207.3	17.9	3.3e-61	206.8	17.9	1.2	1	0	0	1	1	1	1	Carotenoid	biosynthesis	protein
Cytochrom_B562	PF07361.11	gi|529078531|ref|YP_008377534.1|	-	0.05	14.3	0.7	0.073	13.7	0.7	1.3	1	1	0	1	1	1	0	Cytochrome	b562
DUF4398	PF14346.6	gi|529078531|ref|YP_008377534.1|	-	3.4	8.4	12.1	2.1	9.0	8.4	2.0	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4398)
MCPsignal	PF00015.21	gi|529078533|ref|YP_008377536.1|	-	2.3e-40	138.2	41.4	8.4e-40	136.4	21.5	5.6	2	1	2	5	5	5	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
dCache_1	PF02743.18	gi|529078533|ref|YP_008377536.1|	-	4.6e-08	33.1	2.8	4.6e-08	33.1	2.8	4.6	3	2	1	4	4	4	1	Cache	domain
HAMP	PF00672.25	gi|529078533|ref|YP_008377536.1|	-	2.7e-05	24.4	0.2	2.7e-05	24.4	0.2	7.5	7	2	1	8	8	7	2	HAMP	domain
Syntaxin_2	PF14523.6	gi|529078533|ref|YP_008377536.1|	-	0.00086	19.6	17.9	4.1	7.8	0.7	6.1	4	1	1	5	5	5	2	Syntaxin-like	protein
IL10	PF00726.17	gi|529078533|ref|YP_008377536.1|	-	0.026	14.1	0.1	3	7.3	0.0	3.1	2	1	1	3	3	3	0	Interleukin	10
DUF4083	PF13314.6	gi|529078533|ref|YP_008377536.1|	-	0.21	11.5	0.1	0.46	10.5	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4083)
Mod_r	PF07200.13	gi|529078533|ref|YP_008377536.1|	-	0.41	10.8	42.8	0.78	9.8	0.1	6.0	3	2	3	6	6	6	0	Modifier	of	rudimentary	(Mod(r))	protein
DUF948	PF06103.11	gi|529078533|ref|YP_008377536.1|	-	1.1	9.5	56.4	0.098	12.9	1.6	8.2	3	1	6	9	9	9	0	Bacterial	protein	of	unknown	function	(DUF948)
NAGLU_C	PF12972.7	gi|529078533|ref|YP_008377536.1|	-	1.4	8.3	6.7	4.2	6.8	1.6	2.6	1	1	1	2	2	2	0	Alpha-N-acetylglucosaminidase	(NAGLU)	C-terminal	domain
NPV_P10	PF05531.12	gi|529078533|ref|YP_008377536.1|	-	1.6	9.3	34.9	0.4	11.2	1.6	6.9	3	2	3	6	6	6	0	Nucleopolyhedrovirus	P10	protein
Prominin	PF05478.11	gi|529078533|ref|YP_008377536.1|	-	2.3	6.1	25.8	0.017	13.1	4.5	3.2	2	1	2	4	4	4	0	Prominin
BLOC1_2	PF10046.9	gi|529078533|ref|YP_008377536.1|	-	2.6	8.4	41.5	1.6	9.1	1.4	7.2	4	2	2	7	7	7	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF2779	PF11074.8	gi|529078533|ref|YP_008377536.1|	-	3.2	8.2	7.0	1.6	9.2	0.2	3.4	5	0	0	5	5	5	0	Domain	of	unknown	function(DUF2779)
Spc7	PF08317.11	gi|529078533|ref|YP_008377536.1|	-	5.3	5.8	50.9	0.039	12.8	14.0	4.2	2	1	1	4	4	4	0	Spc7	kinetochore	protein
Laminin_II	PF06009.12	gi|529078533|ref|YP_008377536.1|	-	6	6.9	48.5	0.2	11.6	1.2	5.7	3	2	3	6	6	5	0	Laminin	Domain	II
Ribosom_S12_S23	PF00164.25	gi|529078534|ref|YP_008377537.1|	-	6e-50	167.6	0.3	7.5e-50	167.3	0.3	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S12/S23
Ribosomal_S7	PF00177.21	gi|529078535|ref|YP_008377538.1|	-	3.7e-36	124.0	4.6	4.7e-36	123.7	4.6	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S7p/S5e
PBECR3	PF18812.1	gi|529078535|ref|YP_008377538.1|	-	0.03	14.3	0.1	0.047	13.6	0.1	1.4	1	0	0	1	1	1	0	phage-Barnase-EndoU-ColicinE5/D-RelE	like	nuclease3
Ribosomal_L15e	PF00827.17	gi|529078536|ref|YP_008377539.1|	-	4.3e-83	277.7	7.4	5.1e-83	277.5	7.4	1.0	1	0	0	1	1	1	1	Ribosomal	L15
DUF4110	PF13422.6	gi|529078536|ref|YP_008377539.1|	-	0.011	15.7	4.3	0.27	11.3	0.7	2.6	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4110)
YjbF	PF11102.8	gi|529078536|ref|YP_008377539.1|	-	0.065	13.0	1.7	0.78	9.5	1.7	2.1	1	1	0	1	1	1	0	Group	4	capsule	polysaccharide	lipoprotein	gfcB,	YjbF
AlkA_N	PF06029.11	gi|529078536|ref|YP_008377539.1|	-	0.088	13.1	0.7	0.14	12.5	0.7	1.3	1	0	0	1	1	1	0	AlkA	N-terminal	domain
Regulator_TrmB	PF11495.8	gi|529078537|ref|YP_008377540.1|	-	1.3e-42	145.6	0.0	1.7e-42	145.2	0.0	1.1	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.19	gi|529078537|ref|YP_008377540.1|	-	3.7e-14	52.3	0.0	6.8e-14	51.5	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
DprA_WH	PF17782.1	gi|529078537|ref|YP_008377540.1|	-	0.02	15.0	0.0	0.092	12.9	0.0	2.2	1	0	0	1	1	1	0	DprA	winged	helix	domain
HTH_IclR	PF09339.10	gi|529078537|ref|YP_008377540.1|	-	0.025	14.4	0.0	0.11	12.3	0.0	2.0	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|529078537|ref|YP_008377540.1|	-	0.036	13.9	0.0	0.1	12.5	0.0	1.8	1	0	0	1	1	1	0	MarR	family
HTH_24	PF13412.6	gi|529078537|ref|YP_008377540.1|	-	0.063	12.9	0.0	0.13	11.9	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF2250	PF10007.9	gi|529078537|ref|YP_008377540.1|	-	0.1	12.7	0.0	0.2	11.8	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Cellulase	PF00150.18	gi|529078538|ref|YP_008377541.1|	-	9.5e-31	107.3	1.2	1.3e-30	106.8	1.2	1.2	1	0	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
fn3	PF00041.21	gi|529078538|ref|YP_008377541.1|	-	3.7e-10	40.0	0.7	8.6e-10	38.8	0.7	1.6	1	0	0	1	1	1	1	Fibronectin	type	III	domain
TAT_signal	PF10518.9	gi|529078538|ref|YP_008377541.1|	-	0.00098	18.9	3.8	0.0027	17.5	3.8	1.8	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
HYR	PF02494.16	gi|529078538|ref|YP_008377541.1|	-	1.2	9.5	3.8	3.3	8.1	2.6	2.5	2	1	0	2	2	2	0	HYR	domain
fn3	PF00041.21	gi|529078539|ref|YP_008377542.1|	-	3e-25	88.4	8.6	4.2e-13	49.5	0.9	3.3	3	0	0	3	3	3	2	Fibronectin	type	III	domain
Cellulase	PF00150.18	gi|529078539|ref|YP_008377542.1|	-	9.8e-20	71.1	8.9	3.8e-19	69.2	8.9	1.9	1	1	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
PKD	PF00801.20	gi|529078539|ref|YP_008377542.1|	-	2.2e-07	30.6	2.6	2.2e-07	30.6	2.6	4.0	3	2	0	3	3	2	1	PKD	domain
DUF4959	PF16323.5	gi|529078539|ref|YP_008377542.1|	-	2.8e-06	27.6	9.5	0.012	15.9	1.0	3.4	2	1	1	3	3	3	2	Domain	of	unknown	function	(DUF4959)
fn3_2	PF16893.5	gi|529078539|ref|YP_008377542.1|	-	4.2e-06	26.8	0.3	0.0056	16.8	0.1	2.4	2	0	0	2	2	2	2	Fibronectin	type	III	domain
Pur_ac_phosph_N	PF16656.5	gi|529078539|ref|YP_008377542.1|	-	0.00015	22.3	20.0	0.0066	17.0	2.5	4.8	2	2	1	3	3	3	2	Purple	acid	Phosphatase,	N-terminal	domain
TAT_signal	PF10518.9	gi|529078539|ref|YP_008377542.1|	-	0.00063	19.5	0.9	0.0016	18.2	0.9	1.8	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF2369	PF10179.9	gi|529078539|ref|YP_008377542.1|	-	0.0013	19.0	0.0	0.29	11.5	0.0	2.5	2	0	0	2	2	2	1	Uncharacterised	conserved	protein	(DUF2369)
Big_3_4	PF13754.6	gi|529078539|ref|YP_008377542.1|	-	0.0052	16.5	0.3	11	5.8	0.0	3.9	3	1	1	4	4	4	1	Domain	of	unknown	function
Big_6	PF17936.1	gi|529078539|ref|YP_008377542.1|	-	0.016	15.4	22.8	0.54	10.6	5.8	4.5	3	2	0	3	3	3	0	Bacterial	Ig	domain
Arylsulfotran_N	PF17425.2	gi|529078539|ref|YP_008377542.1|	-	0.017	15.1	9.3	0.053	13.6	0.2	3.5	3	0	0	3	3	3	0	Arylsulfotransferase	Ig-like	domain
Big_3_3	PF13750.6	gi|529078539|ref|YP_008377542.1|	-	0.14	11.8	8.3	2.9	7.5	0.2	3.7	3	1	0	3	3	3	0	Bacterial	Ig-like	domain	(group	3)
MG2	PF01835.19	gi|529078539|ref|YP_008377542.1|	-	0.22	12.0	2.9	1.2	9.7	0.4	3.0	2	1	0	2	2	2	0	MG2	domain
Cadherin	PF00028.17	gi|529078539|ref|YP_008377542.1|	-	2.5	8.6	4.7	17	5.9	0.5	3.3	3	0	0	3	3	3	0	Cadherin	domain
Glyco_hydro_12	PF01670.16	gi|529078540|ref|YP_008377543.1|	-	1.8e-13	51.0	6.6	1.9e-13	50.9	5.7	1.5	2	0	0	2	2	2	1	Glycosyl	hydrolase	family	12
DUF4325	PF14213.6	gi|529078540|ref|YP_008377543.1|	-	0.043	13.5	0.1	0.084	12.6	0.1	1.5	1	0	0	1	1	1	0	STAS-like	domain	of	unknown	function	(DUF4325)
PRCC	PF10253.9	gi|529078540|ref|YP_008377543.1|	-	0.65	10.8	5.6	1	10.1	5.6	1.2	1	0	0	1	1	1	0	Mitotic	checkpoint	regulator,	MAD2B-interacting
TAT_signal	PF10518.9	gi|529078540|ref|YP_008377543.1|	-	2.4	8.1	5.8	5.7	7.0	5.8	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ORC6	PF05460.13	gi|529078540|ref|YP_008377543.1|	-	6.8	5.9	6.7	10	5.3	6.7	1.1	1	0	0	1	1	1	0	Origin	recognition	complex	subunit	6	(ORC6)
DUF3530	PF12048.8	gi|529078540|ref|YP_008377543.1|	-	8.6	5.7	6.4	16	4.8	6.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3530)
Glyco_hydro_10	PF00331.20	gi|529078541|ref|YP_008377544.1|	-	1.4e-32	113.1	4.0	2e-32	112.6	4.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	10
fn3	PF00041.21	gi|529078541|ref|YP_008377544.1|	-	1.7e-09	37.9	0.1	1.7e-09	37.9	0.1	2.0	2	0	0	2	2	2	1	Fibronectin	type	III	domain
DUF4959	PF16323.5	gi|529078541|ref|YP_008377544.1|	-	0.031	14.6	0.4	0.09	13.1	0.2	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4959)
UCR_Fe-S_N	PF10399.9	gi|529078541|ref|YP_008377544.1|	-	0.05	12.9	2.7	0.13	11.7	2.7	1.7	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Glyco_hydro_10	PF00331.20	gi|529078542|ref|YP_008377545.1|	-	3.4e-33	115.1	5.3	5.1e-33	114.6	5.3	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	10
PKD	PF00801.20	gi|529078542|ref|YP_008377545.1|	-	1.8e-13	50.1	19.9	2.6e-10	40.0	6.5	5.2	4	1	1	5	5	5	2	PKD	domain
fn3	PF00041.21	gi|529078542|ref|YP_008377545.1|	-	9.8e-09	35.4	0.1	9.8e-09	35.4	0.1	2.8	4	0	0	4	4	4	1	Fibronectin	type	III	domain
MG2	PF01835.19	gi|529078542|ref|YP_008377545.1|	-	0.078	13.4	8.4	7.9	7.0	0.2	4.3	4	0	0	4	4	4	0	MG2	domain
BatD	PF13584.6	gi|529078542|ref|YP_008377545.1|	-	0.16	10.7	4.6	0.22	10.3	0.0	2.9	3	1	1	4	4	4	0	Oxygen	tolerance
Pilin_N	PF07790.11	gi|529078542|ref|YP_008377545.1|	-	0.37	11.7	6.0	8.7	7.4	0.7	3.2	2	0	0	2	2	2	0	Archaeal	Type	IV	pilin,	N-terminal
UCR_Fe-S_N	PF10399.9	gi|529078542|ref|YP_008377545.1|	-	9.3	5.7	7.2	8.4	5.8	4.6	2.2	2	0	0	2	2	2	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Cellulase	PF00150.18	gi|529078543|ref|YP_008377546.1|	-	2.7e-25	89.4	0.1	7.1e-25	88.0	0.1	1.6	1	1	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
fn3	PF00041.21	gi|529078543|ref|YP_008377546.1|	-	2.3e-23	82.3	0.8	2.8e-11	43.6	0.1	2.6	2	0	0	2	2	2	2	Fibronectin	type	III	domain
DUF4959	PF16323.5	gi|529078543|ref|YP_008377546.1|	-	1.7e-06	28.3	1.8	0.019	15.3	0.4	2.4	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4959)
DUF2369	PF10179.9	gi|529078543|ref|YP_008377546.1|	-	1.3e-05	25.4	0.0	0.079	13.3	0.0	2.4	2	0	0	2	2	2	2	Uncharacterised	conserved	protein	(DUF2369)
fn3_2	PF16893.5	gi|529078543|ref|YP_008377546.1|	-	2.1e-05	24.5	0.0	0.076	13.2	0.0	2.3	2	0	0	2	2	2	2	Fibronectin	type	III	domain
ChitinaseA_N	PF08329.10	gi|529078543|ref|YP_008377546.1|	-	8.9e-05	22.1	5.8	0.097	12.3	0.1	2.5	1	1	1	2	2	2	2	Chitinase	A,	N-terminal	domain
Big_6	PF17936.1	gi|529078543|ref|YP_008377546.1|	-	0.00051	20.3	10.2	0.11	12.8	0.1	3.2	3	0	0	3	3	3	2	Bacterial	Ig	domain
DUF4998	PF16389.5	gi|529078543|ref|YP_008377546.1|	-	0.00076	19.1	0.0	0.0023	17.5	0.0	1.8	1	1	1	2	2	2	1	Domain	of	unknown	function
Pur_ac_phosph_N	PF16656.5	gi|529078543|ref|YP_008377546.1|	-	0.0011	19.5	7.1	0.45	11.1	1.1	4.4	2	2	0	2	2	2	1	Purple	acid	Phosphatase,	N-terminal	domain
fn3_4	PF16794.5	gi|529078543|ref|YP_008377546.1|	-	0.0012	18.8	0.0	3.1	7.8	0.0	4.1	3	2	1	4	4	4	1	Fibronectin-III	type	domain
TAT_signal	PF10518.9	gi|529078543|ref|YP_008377546.1|	-	0.0065	16.3	5.5	0.0065	16.3	5.5	3.1	2	1	1	3	3	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Big_3_2	PF12245.8	gi|529078543|ref|YP_008377546.1|	-	0.0073	16.6	3.9	0.92	9.8	0.1	2.4	1	1	1	2	2	2	2	Bacterial	Ig-like	domain
Arylsulfotran_N	PF17425.2	gi|529078543|ref|YP_008377546.1|	-	0.012	15.6	0.5	1.7	8.8	0.1	2.5	2	0	0	2	2	2	0	Arylsulfotransferase	Ig-like	domain
PKD	PF00801.20	gi|529078544|ref|YP_008377547.1|	-	1.6e-08	34.2	7.2	5.2e-08	32.6	7.2	1.9	1	0	0	1	1	1	1	PKD	domain
Pec_lyase_C	PF00544.19	gi|529078544|ref|YP_008377547.1|	-	0.00069	19.3	3.3	0.00069	19.3	3.3	2.7	2	1	0	2	2	2	1	Pectate	lyase
Beta_helix	PF13229.6	gi|529078544|ref|YP_008377547.1|	-	0.11	12.3	2.6	0.24	11.2	1.0	1.9	1	1	1	2	2	2	0	Right	handed	beta	helix	region
FAD-SLDH	PF12318.8	gi|529078544|ref|YP_008377547.1|	-	0.11	12.5	0.0	0.2	11.7	0.0	1.3	1	0	0	1	1	1	0	Membrane	bound	FAD	containing	D-sorbitol	dehydrogenase
Invasin_D3	PF09134.10	gi|529078544|ref|YP_008377547.1|	-	7.8	6.9	11.5	0.067	13.5	1.0	2.9	3	0	0	3	3	3	0	Invasin,	domain	3
Cellulase	PF00150.18	gi|529078545|ref|YP_008377548.1|	-	4.4e-26	92.0	1.3	1.3e-25	90.4	1.3	1.7	1	1	0	1	1	1	1	Cellulase	(glycosyl	hydrolase	family	5)
fn3	PF00041.21	gi|529078545|ref|YP_008377548.1|	-	8.6e-25	86.9	6.7	1.1e-09	38.5	0.1	4.4	4	0	0	4	4	4	3	Fibronectin	type	III	domain
CBM_6	PF03422.15	gi|529078545|ref|YP_008377548.1|	-	2e-19	70.1	3.9	2e-19	70.1	3.9	3.4	4	1	1	5	5	5	1	Carbohydrate	binding	module	(family	6)
DUF5010_C	PF18099.1	gi|529078545|ref|YP_008377548.1|	-	9.8e-12	45.0	1.7	9.8e-12	45.0	1.7	3.3	4	0	0	4	4	4	1	DUF5010	C-terminal	domain
DUF4959	PF16323.5	gi|529078545|ref|YP_008377548.1|	-	1.9e-06	28.2	2.6	0.21	11.9	0.1	3.5	3	0	0	3	3	3	3	Domain	of	unknown	function	(DUF4959)
Big_6	PF17936.1	gi|529078545|ref|YP_008377548.1|	-	2.5e-05	24.4	12.8	0.41	11.0	0.8	4.1	3	0	0	3	3	3	3	Bacterial	Ig	domain
Big_3_2	PF12245.8	gi|529078545|ref|YP_008377548.1|	-	0.00028	21.1	2.4	9.2	6.6	0.0	3.9	3	0	0	3	3	3	2	Bacterial	Ig-like	domain
DUF2369	PF10179.9	gi|529078545|ref|YP_008377548.1|	-	0.0026	18.1	0.0	21	5.6	0.0	3.2	3	0	0	3	3	3	0	Uncharacterised	conserved	protein	(DUF2369)
DUF4625	PF15418.6	gi|529078545|ref|YP_008377548.1|	-	0.0089	16.3	0.2	17	5.6	0.0	3.5	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4625)
DUF4998	PF16389.5	gi|529078545|ref|YP_008377548.1|	-	0.025	14.2	0.2	0.53	9.8	0.0	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function
Glyco_hydro_cc	PF11790.8	gi|529078545|ref|YP_008377548.1|	-	0.051	13.1	0.1	0.16	11.5	0.1	1.6	1	1	0	1	1	1	0	Glycosyl	hydrolase	catalytic	core
Big_3_3	PF13750.6	gi|529078545|ref|YP_008377548.1|	-	0.079	12.6	5.0	5.4	6.6	0.2	3.5	3	0	0	3	3	3	0	Bacterial	Ig-like	domain	(group	3)
Glyco_hydro_9	PF00759.19	gi|529078546|ref|YP_008377549.1|	-	1.5e-114	383.7	17.1	2.1e-114	383.2	17.1	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	9
CBM_3	PF00942.18	gi|529078546|ref|YP_008377549.1|	-	8.9e-14	51.7	0.0	3.7e-13	49.7	0.0	2.2	1	0	0	1	1	1	1	Cellulose	binding	domain
fn3	PF00041.21	gi|529078546|ref|YP_008377549.1|	-	2.9e-09	37.1	0.1	1.1e-08	35.3	0.1	2.1	1	0	0	1	1	1	1	Fibronectin	type	III	domain
DUF4959	PF16323.5	gi|529078546|ref|YP_008377549.1|	-	0.023	15.0	0.3	0.05	13.9	0.3	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4959)
RIO1	PF01163.22	gi|529078548|ref|YP_008377551.1|	-	6.2e-48	162.9	0.2	8e-48	162.5	0.2	1.1	1	0	0	1	1	1	1	RIO1	family
Rio2_N	PF09202.11	gi|529078548|ref|YP_008377551.1|	-	6.3e-29	100.0	0.0	1.3e-28	99.0	0.0	1.6	1	0	0	1	1	1	1	Rio2,	N-terminal
APH	PF01636.23	gi|529078548|ref|YP_008377551.1|	-	6.7e-05	22.9	1.2	0.062	13.2	0.0	2.4	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Pkinase	PF00069.25	gi|529078548|ref|YP_008377551.1|	-	0.00041	19.8	0.0	0.0006	19.3	0.0	1.2	1	0	0	1	1	1	1	Protein	kinase	domain
DDE_Tnp_IS1595	PF12762.7	gi|529078550|ref|YP_008377553.1|	-	1.2e-09	38.4	0.1	1.2e-09	38.3	0.1	1.1	1	0	0	1	1	1	1	ISXO2-like	transposase	domain
AP_endonuc_2	PF01261.24	gi|529078551|ref|YP_008377554.1|	-	6.8e-26	91.0	2.3	7.1e-26	91.0	0.9	1.6	2	0	0	2	2	2	1	Xylose	isomerase-like	TIM	barrel
Methyltransf_11	PF08241.12	gi|529078552|ref|YP_008377555.1|	-	3.5e-16	59.6	0.1	9.4e-16	58.3	0.1	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|529078552|ref|YP_008377555.1|	-	1.9e-13	50.9	0.2	2.9e-12	47.1	0.0	2.6	3	1	0	3	3	3	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|529078552|ref|YP_008377555.1|	-	2.6e-10	40.3	0.1	5.1e-09	36.1	0.0	2.7	1	1	1	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|529078552|ref|YP_008377555.1|	-	9.7e-09	35.3	0.0	1.4e-08	34.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|529078552|ref|YP_008377555.1|	-	3.4e-06	27.7	0.1	5.1e-05	23.9	0.0	2.7	3	1	0	3	3	3	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|529078552|ref|YP_008377555.1|	-	0.00012	21.5	0.0	0.00082	18.8	0.0	2.1	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
MetW	PF07021.12	gi|529078552|ref|YP_008377555.1|	-	0.01	15.5	0.0	0.022	14.4	0.0	1.5	1	1	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
RrnaAD	PF00398.20	gi|529078552|ref|YP_008377555.1|	-	0.011	14.8	0.0	0.016	14.3	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Methyltransf_32	PF13679.6	gi|529078552|ref|YP_008377555.1|	-	0.019	14.9	0.0	0.071	13.1	0.0	1.8	2	0	0	2	2	2	0	Methyltransferase	domain
ATP_bind_3	PF01171.20	gi|529078554|ref|YP_008377557.1|	-	1.5e-14	54.2	0.0	2e-14	53.7	0.0	1.2	1	0	0	1	1	1	1	PP-loop	family
PAPS_reduct	PF01507.19	gi|529078554|ref|YP_008377557.1|	-	4.5e-07	30.1	0.0	6.3e-07	29.6	0.0	1.1	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
NAD_synthase	PF02540.17	gi|529078554|ref|YP_008377557.1|	-	0.00041	19.5	0.0	0.00075	18.7	0.0	1.4	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|529078554|ref|YP_008377557.1|	-	0.0082	15.0	0.0	0.012	14.4	0.0	1.2	1	0	0	1	1	1	1	tRNA	methyl	transferase
zn-ribbon_14	PF16503.5	gi|529078554|ref|YP_008377557.1|	-	0.012	15.1	1.4	0.012	15.1	1.4	1.6	2	0	0	2	2	2	0	Zinc-ribbon
Asn_synthase	PF00733.21	gi|529078554|ref|YP_008377557.1|	-	0.023	14.3	0.3	0.048	13.3	0.0	1.5	2	0	0	2	2	2	0	Asparagine	synthase
DZR	PF12773.7	gi|529078554|ref|YP_008377557.1|	-	0.05	13.6	2.6	0.24	11.5	0.8	2.2	2	0	0	2	2	2	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|529078554|ref|YP_008377557.1|	-	0.14	11.6	6.7	2	7.9	2.1	2.7	2	0	0	2	2	2	0	zinc-ribbon	domain
Tubulin	PF00091.25	gi|529078555|ref|YP_008377558.1|	-	5.2e-37	128.0	3.3	1.3e-36	126.7	3.3	1.7	1	1	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
FtsZ_C	PF12327.8	gi|529078555|ref|YP_008377558.1|	-	1.7e-34	118.0	0.7	1.7e-34	118.0	0.7	2.7	2	1	1	3	3	3	1	FtsZ	family,	C-terminal	domain
Csm1_B	PF18211.1	gi|529078555|ref|YP_008377558.1|	-	0.2	11.5	0.0	0.54	10.1	0.0	1.7	1	0	0	1	1	1	0	Csm1	subunit	domain	B
RHH_1	PF01402.21	gi|529078556|ref|YP_008377559.1|	-	6.5e-09	35.4	0.3	9.8e-09	34.8	0.3	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|529078556|ref|YP_008377559.1|	-	5.6e-06	26.5	0.0	5.8e-06	26.5	0.0	1.0	1	0	0	1	1	1	1	Ribbon-Helix-Helix	transcriptional	regulator	family
VapB_antitoxin	PF09957.9	gi|529078556|ref|YP_008377559.1|	-	0.064	13.2	0.4	0.083	12.8	0.4	1.3	1	1	0	1	1	1	0	Bacterial	antitoxin	of	type	II	TA	system,	VapB
zinc_ribbon_2	PF13240.6	gi|529078557|ref|YP_008377560.1|	-	9.8e-10	37.8	11.3	9.2e-06	25.2	3.8	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|529078557|ref|YP_008377560.1|	-	2.9e-09	36.0	11.7	2.8e-05	23.4	4.0	2.7	1	1	2	3	3	3	3	zinc-ribbon	domain
DZR	PF12773.7	gi|529078557|ref|YP_008377560.1|	-	7.7e-08	32.3	10.2	1.9e-07	31.0	10.2	1.7	1	1	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_15	PF17032.5	gi|529078557|ref|YP_008377560.1|	-	2.2e-07	31.5	7.5	3.2e-05	24.6	0.6	2.2	2	0	0	2	2	2	2	zinc-ribbon	family
zf-NADH-PPase	PF09297.11	gi|529078557|ref|YP_008377560.1|	-	1.8e-06	27.5	5.0	0.046	13.4	0.0	3.4	3	0	0	3	3	3	2	NADH	pyrophosphatase	zinc	ribbon	domain
PolC_DP2	PF03833.13	gi|529078557|ref|YP_008377560.1|	-	5e-05	21.4	0.9	5.2e-05	21.3	0.9	1.0	1	0	0	1	1	1	1	DNA	polymerase	II	large	subunit	DP2
RHH_1	PF01402.21	gi|529078557|ref|YP_008377560.1|	-	0.00037	20.3	6.1	0.0012	18.7	0.7	3.5	3	1	0	3	3	3	1	Ribbon-helix-helix	protein,	copG	family
NOB1_Zn_bind	PF08772.11	gi|529078557|ref|YP_008377560.1|	-	0.0011	19.0	11.3	0.012	15.8	4.8	2.5	1	1	1	2	2	2	1	Nin	one	binding	(NOB1)	Zn-ribbon	like
Nudix_N_2	PF14803.6	gi|529078557|ref|YP_008377560.1|	-	0.002	18.0	11.5	1.5	8.8	2.4	3.7	3	1	0	3	3	3	2	Nudix	N-terminal
zf-ACC	PF17848.1	gi|529078557|ref|YP_008377560.1|	-	0.0086	16.1	3.2	9.1	6.5	0.0	3.4	3	0	0	3	3	3	0	Acetyl-coA	carboxylase	zinc	finger	domain
Zn-ribbon_8	PF09723.10	gi|529078557|ref|YP_008377560.1|	-	0.015	15.4	12.5	0.07	13.3	3.3	3.4	2	1	1	3	3	3	0	Zinc	ribbon	domain
zinc-ribbons_6	PF07191.12	gi|529078557|ref|YP_008377560.1|	-	0.021	14.8	9.5	0.044	13.8	5.2	2.3	1	1	1	2	2	2	0	zinc-ribbons
VapB_antitoxin	PF09957.9	gi|529078557|ref|YP_008377560.1|	-	0.022	14.7	1.9	0.052	13.5	0.6	2.3	2	1	0	2	2	1	0	Bacterial	antitoxin	of	type	II	TA	system,	VapB
OrfB_Zn_ribbon	PF07282.11	gi|529078557|ref|YP_008377560.1|	-	0.025	14.5	12.6	2.4	8.2	12.6	2.7	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Cys_rich_KTR	PF14205.6	gi|529078557|ref|YP_008377560.1|	-	0.032	14.0	4.8	0.75	9.6	5.1	2.3	1	1	1	2	2	2	0	Cysteine-rich	KTR
HypA	PF01155.19	gi|529078557|ref|YP_008377560.1|	-	0.034	14.2	11.3	0.052	13.6	3.2	2.4	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
UPF0547	PF10571.9	gi|529078557|ref|YP_008377560.1|	-	0.046	13.8	8.9	0.14	12.2	1.4	2.5	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
tRNA-synt_1g	PF09334.11	gi|529078557|ref|YP_008377560.1|	-	0.071	11.8	0.9	0.11	11.3	0.9	1.4	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(M)
zf-RING_7	PF02591.15	gi|529078557|ref|YP_008377560.1|	-	0.072	13.3	8.6	2.3	8.5	0.1	3.4	3	0	0	3	3	3	0	C4-type	zinc	ribbon	domain
DUF1610	PF07754.11	gi|529078557|ref|YP_008377560.1|	-	0.084	12.9	8.6	0.2	11.7	1.0	3.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1610)
zf_UBZ	PF18439.1	gi|529078557|ref|YP_008377560.1|	-	0.17	11.5	5.7	3.8	7.2	0.1	3.4	2	1	1	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
DUF1676	PF07898.13	gi|529078557|ref|YP_008377560.1|	-	0.27	11.3	0.3	0.59	10.1	0.1	1.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1676)
zf-C3HC4_3	PF13920.6	gi|529078557|ref|YP_008377560.1|	-	0.32	10.9	7.6	0.3	11.0	1.2	2.2	1	1	1	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-ISL3	PF14690.6	gi|529078557|ref|YP_008377560.1|	-	0.38	11.5	12.6	12	6.6	0.2	3.6	2	1	2	4	4	4	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-C3HC4_2	PF13923.6	gi|529078557|ref|YP_008377560.1|	-	0.46	10.4	6.4	0.71	9.8	0.7	2.5	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
Zn_Tnp_IS1595	PF12760.7	gi|529078557|ref|YP_008377560.1|	-	0.57	10.2	9.1	4	7.5	1.0	3.3	2	1	1	3	3	3	0	Transposase	zinc-ribbon	domain
zf-dskA_traR	PF01258.17	gi|529078557|ref|YP_008377560.1|	-	0.6	10.1	0.1	0.6	10.1	0.1	3.5	4	0	0	4	4	3	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
Prok-RING_1	PF14446.6	gi|529078557|ref|YP_008377560.1|	-	0.64	10.0	13.1	1.4	9.0	7.5	2.7	2	1	1	3	3	3	0	Prokaryotic	RING	finger	family	1
zf-CHY	PF05495.12	gi|529078557|ref|YP_008377560.1|	-	0.68	10.5	7.2	2.9	8.4	7.2	1.9	1	1	0	1	1	1	0	CHY	zinc	finger
Sgf11	PF08209.11	gi|529078557|ref|YP_008377560.1|	-	0.98	9.0	8.0	8.4	6.0	0.7	3.2	2	1	1	3	3	3	0	Sgf11	(transcriptional	regulation	protein)
Ribosomal_L32p	PF01783.23	gi|529078557|ref|YP_008377560.1|	-	1.2	9.4	8.6	0.57	10.5	1.9	2.8	1	1	2	3	3	3	0	Ribosomal	L32p	protein	family
DUF35_N	PF12172.8	gi|529078557|ref|YP_008377560.1|	-	1.8	8.5	9.2	1.9	8.4	2.1	2.6	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
TF_Zn_Ribbon	PF08271.12	gi|529078557|ref|YP_008377560.1|	-	2	8.0	15.8	1.4	8.5	0.7	3.3	1	1	2	3	3	3	0	TFIIB	zinc-binding
DNA_ligase_ZBD	PF03119.16	gi|529078557|ref|YP_008377560.1|	-	2.8	8.0	7.9	7	6.8	0.2	3.2	3	0	0	3	3	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
DpnI	PF06044.12	gi|529078557|ref|YP_008377560.1|	-	3.2	7.3	4.3	43	3.7	4.8	2.0	1	1	1	2	2	2	0	Dam-replacing	family
zf-LITAF-like	PF10601.9	gi|529078557|ref|YP_008377560.1|	-	4.2	7.7	10.0	8.4	6.7	1.3	3.1	1	1	3	4	4	4	0	LITAF-like	zinc	ribbon	domain
Rubredoxin_2	PF18073.1	gi|529078557|ref|YP_008377560.1|	-	4.9	7.0	11.0	3	7.6	4.0	2.7	2	1	0	2	2	2	0	Rubredoxin	metal	binding	domain
PTE	PF02126.18	gi|529078558|ref|YP_008377561.1|	-	4.5e-53	180.6	0.0	5.2e-53	180.4	0.0	1.0	1	0	0	1	1	1	1	Phosphotriesterase	family
Reprolysin_4	PF13583.6	gi|529078558|ref|YP_008377561.1|	-	0.029	14.0	0.0	0.056	13.1	0.0	1.4	1	0	0	1	1	1	0	Metallo-peptidase	family	M12B	Reprolysin-like
HypA	PF01155.19	gi|529078559|ref|YP_008377562.1|	-	0.00052	20.0	0.5	0.00062	19.8	0.5	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|529078559|ref|YP_008377562.1|	-	0.00081	19.4	2.4	0.0019	18.3	2.4	1.6	1	1	0	1	1	1	1	Zinc	ribbon	domain
zinc_ribbon_6	PF14599.6	gi|529078559|ref|YP_008377562.1|	-	0.0037	17.3	1.5	0.0047	16.9	1.5	1.2	1	0	0	1	1	1	1	Zinc-ribbon
DZR	PF12773.7	gi|529078559|ref|YP_008377562.1|	-	0.0047	16.9	0.9	0.0056	16.7	0.9	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
TackOD1	PF18551.1	gi|529078559|ref|YP_008377562.1|	-	0.0062	16.2	0.2	0.0067	16.1	0.2	1.1	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
zinc_ribbon_15	PF17032.5	gi|529078559|ref|YP_008377562.1|	-	0.019	15.7	0.6	0.021	15.6	0.6	1.1	1	0	0	1	1	1	0	zinc-ribbon	family
TFIIS_C	PF01096.18	gi|529078559|ref|YP_008377562.1|	-	0.023	14.6	0.7	5.8	6.9	0.0	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Rubredoxin_2	PF18073.1	gi|529078559|ref|YP_008377562.1|	-	0.059	13.1	1.8	0.1	12.3	1.8	1.4	1	0	0	1	1	1	0	Rubredoxin	metal	binding	domain
Ribosomal_L32p	PF01783.23	gi|529078559|ref|YP_008377562.1|	-	0.082	13.2	1.1	0.12	12.7	1.1	1.3	1	0	0	1	1	1	0	Ribosomal	L32p	protein	family
DUF3797	PF12677.7	gi|529078559|ref|YP_008377562.1|	-	0.087	12.7	0.5	0.11	12.4	0.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3797)
TF_Zn_Ribbon	PF08271.12	gi|529078559|ref|YP_008377562.1|	-	0.092	12.3	1.7	0.34	10.5	0.1	2.0	2	0	0	2	2	2	0	TFIIB	zinc-binding
DNA_RNApol_7kD	PF03604.13	gi|529078559|ref|YP_008377562.1|	-	0.1	12.3	1.6	0.2	11.3	1.6	1.5	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Aldo_ket_red	PF00248.21	gi|529078560|ref|YP_008377563.1|	-	4.1e-11	42.6	0.0	1.1e-10	41.2	0.0	1.6	1	1	1	2	2	2	1	Aldo/keto	reductase	family
DUF4129	PF13559.6	gi|529078561|ref|YP_008377564.1|	-	1.5e-09	38.0	3.1	1.5e-09	38.0	3.1	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4129)
DUF58	PF01882.18	gi|529078562|ref|YP_008377565.1|	-	1.6e-18	66.7	0.6	1.6e-18	66.7	0.6	2.3	3	0	0	3	3	3	1	Protein	of	unknown	function	DUF58
DUF11	PF01345.18	gi|529078562|ref|YP_008377565.1|	-	2.1e-09	37.5	2.1	7.7e-09	35.7	0.6	2.5	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF11
NPCBM_assoc	PF10633.9	gi|529078562|ref|YP_008377565.1|	-	7.8e-06	26.1	1.4	4.9e-05	23.5	0.1	3.0	3	0	0	3	3	3	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
HTH_11	PF08279.12	gi|529078564|ref|YP_008377567.1|	-	4.7e-05	23.2	0.0	6.7e-05	22.8	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|529078564|ref|YP_008377567.1|	-	7.2e-05	22.8	0.0	9e-05	22.5	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_17	PF12728.7	gi|529078564|ref|YP_008377567.1|	-	0.018	15.3	0.1	0.12	12.6	0.0	2.1	2	1	0	2	2	2	0	Helix-turn-helix	domain
HTH_Mga	PF08280.11	gi|529078564|ref|YP_008377567.1|	-	0.028	14.4	0.0	0.038	14.0	0.0	1.1	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
SgrR_N	PF12793.7	gi|529078564|ref|YP_008377567.1|	-	0.033	14.4	0.0	0.09	13.0	0.0	1.7	1	1	1	2	2	2	0	Sugar	transport-related	sRNA	regulator	N-term
HTH_Crp_2	PF13545.6	gi|529078564|ref|YP_008377567.1|	-	0.044	13.8	0.0	0.048	13.6	0.0	1.3	1	1	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.6	gi|529078564|ref|YP_008377567.1|	-	0.049	13.5	0.0	0.087	12.7	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_CodY	PF08222.11	gi|529078564|ref|YP_008377567.1|	-	0.17	11.4	0.0	0.25	10.9	0.0	1.2	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
HTH_AraC	PF00165.23	gi|529078564|ref|YP_008377567.1|	-	0.18	12.0	0.0	0.69	10.1	0.0	1.8	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
DUF4129	PF13559.6	gi|529078565|ref|YP_008377568.1|	-	1.9e-11	44.1	5.5	1.9e-11	44.1	5.5	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4129)
Phage_holin_7_1	PF16081.5	gi|529078565|ref|YP_008377568.1|	-	1.5	9.0	6.3	4.6	7.4	0.5	2.5	2	0	0	2	2	2	0	Mycobacterial	2	TMS	Phage	Holin	(M2	Hol)	Family
DUF58	PF01882.18	gi|529078566|ref|YP_008377569.1|	-	2.1e-18	66.4	2.4	3.4e-18	65.7	1.4	2.0	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF58
DUF11	PF01345.18	gi|529078566|ref|YP_008377569.1|	-	8.6e-06	26.0	1.6	7.5e-05	23.0	1.3	2.8	1	1	1	2	2	2	1	Domain	of	unknown	function	DUF11
NPCBM_assoc	PF10633.9	gi|529078566|ref|YP_008377569.1|	-	5.6e-05	23.3	0.2	0.0028	17.8	0.0	2.9	2	0	0	2	2	2	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
CARDB	PF07705.11	gi|529078566|ref|YP_008377569.1|	-	0.014	15.7	0.0	8.7	6.7	0.0	2.5	2	0	0	2	2	2	0	CARDB
MFS_2	PF13347.6	gi|529078566|ref|YP_008377569.1|	-	0.036	12.6	0.1	0.065	11.8	0.1	1.3	1	0	0	1	1	1	0	MFS/sugar	transport	protein
DUF3222	PF11519.8	gi|529078566|ref|YP_008377569.1|	-	0.12	12.6	0.4	0.43	10.9	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3222)
DUF3040	PF11239.8	gi|529078566|ref|YP_008377569.1|	-	0.41	11.0	6.3	18	5.7	2.4	3.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3040)
AAA_3	PF07726.11	gi|529078568|ref|YP_008377571.1|	-	1e-65	219.5	0.1	1.6e-65	218.9	0.1	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|529078568|ref|YP_008377571.1|	-	1.3e-20	73.0	3.2	3e-20	71.8	3.2	1.6	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|529078568|ref|YP_008377571.1|	-	8.3e-16	58.2	0.0	2.1e-15	56.9	0.0	1.7	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|529078568|ref|YP_008377571.1|	-	4.4e-07	30.4	0.0	1.1e-06	29.0	0.0	1.8	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|529078568|ref|YP_008377571.1|	-	2.2e-05	24.2	0.0	0.0016	18.2	0.0	2.3	2	0	0	2	2	2	1	Sigma-54	interaction	domain
MCM	PF00493.23	gi|529078568|ref|YP_008377571.1|	-	0.00031	19.9	0.0	0.00055	19.1	0.0	1.5	1	1	0	1	1	1	1	MCM	P-loop	domain
Mg_chelatase	PF01078.21	gi|529078568|ref|YP_008377571.1|	-	0.00033	20.1	0.1	0.14	11.5	0.0	2.3	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
RuvB_N	PF05496.12	gi|529078568|ref|YP_008377571.1|	-	0.0082	15.9	0.0	0.16	11.7	0.0	2.2	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_2	PF07724.14	gi|529078568|ref|YP_008377571.1|	-	0.013	15.7	0.0	0.029	14.5	0.0	1.6	1	1	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
AAA_lid_8	PF17868.1	gi|529078568|ref|YP_008377571.1|	-	0.028	14.3	0.0	0.05	13.5	0.0	1.4	1	0	0	1	1	1	0	AAA	lid	domain
Mg_chelatase_C	PF13335.6	gi|529078568|ref|YP_008377571.1|	-	0.03	15.0	0.8	0.08	13.6	0.4	1.9	2	0	0	2	2	1	0	Magnesium	chelatase,	subunit	ChlI	C-terminal
OrfB_Zn_ribbon	PF07282.11	gi|529078569|ref|YP_008377572.1|	-	1.6e-23	82.4	0.5	3e-23	81.5	0.5	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|529078569|ref|YP_008377572.1|	-	5.2e-10	39.6	0.2	8.3e-10	38.9	0.2	1.3	1	0	0	1	1	1	1	Probable	transposase
HypA	PF01155.19	gi|529078569|ref|YP_008377572.1|	-	0.12	12.4	0.1	0.25	11.4	0.1	1.6	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-HC3	PF16827.5	gi|529078569|ref|YP_008377572.1|	-	0.79	10.0	4.6	16	5.8	0.0	3.6	3	1	1	4	4	4	0	zinc-finger
Tnp_zf-ribbon_2	PF13842.6	gi|529078569|ref|YP_008377572.1|	-	2.1	9.2	6.2	0.58	11.0	2.5	2.0	2	0	0	2	2	2	0	DDE_Tnp_1-like	zinc-ribbon
DUF2070	PF09843.9	gi|529078570|ref|YP_008377573.1|	-	4.2e-209	695.5	0.0	4.9e-209	695.3	0.0	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2070)
Glyco_hydro_43	PF04616.14	gi|529078571|ref|YP_008377574.1|	-	1.1e-54	185.7	7.0	1.6e-54	185.2	7.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	43
Dockerin_1	PF00404.18	gi|529078571|ref|YP_008377574.1|	-	0.0054	16.9	3.8	0.015	15.5	3.8	1.8	1	0	0	1	1	1	1	Dockerin	type	I	domain
EF-hand_6	PF13405.6	gi|529078571|ref|YP_008377574.1|	-	0.0074	16.1	2.3	0.94	9.6	0.0	3.5	3	0	0	3	3	3	1	EF-hand	domain
Glyco_hydro_32N	PF00251.20	gi|529078571|ref|YP_008377574.1|	-	0.02	14.4	0.5	0.17	11.4	0.0	2.1	1	1	1	2	2	2	0	Glycosyl	hydrolases	family	32	N-terminal	domain
GATase	PF00117.28	gi|529078572|ref|YP_008377575.1|	-	7.7e-34	117.1	0.0	8.6e-34	117.0	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|529078572|ref|YP_008377575.1|	-	5.6e-14	52.4	1.1	3.2e-12	46.7	0.2	2.7	1	1	1	2	2	2	1	Peptidase	C26
GATase_3	PF07685.14	gi|529078572|ref|YP_008377575.1|	-	0.043	13.4	0.3	0.19	11.3	0.3	2.0	1	1	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
HisKA_4TM	PF16926.5	gi|529078573|ref|YP_008377576.1|	-	2.7e-08	33.6	3.0	6.6e-08	32.3	2.7	1.8	1	1	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
HATPase_c	PF02518.26	gi|529078573|ref|YP_008377576.1|	-	0.02	15.4	0.0	0.038	14.5	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|529078573|ref|YP_008377576.1|	-	0.064	13.3	0.0	0.13	12.3	0.0	1.5	1	0	0	1	1	1	0	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.6	gi|529078573|ref|YP_008377576.1|	-	0.092	12.7	0.0	0.21	11.5	0.0	1.6	1	0	0	1	1	1	0	GHKL	domain
OrfB_Zn_ribbon	PF07282.11	gi|529078574|ref|YP_008377577.1|	-	8.3e-19	67.3	0.6	1.5e-18	66.5	0.6	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1595	PF12760.7	gi|529078574|ref|YP_008377577.1|	-	0.0051	16.7	6.2	0.0095	15.9	6.2	1.4	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Lumazine_bd_2	PF12893.7	gi|529078574|ref|YP_008377577.1|	-	0.042	14.5	0.1	0.098	13.3	0.1	1.6	1	0	0	1	1	1	0	Putative	lumazine-binding
XisH	PF08814.10	gi|529078574|ref|YP_008377577.1|	-	0.068	13.3	0.2	0.15	12.3	0.2	1.5	1	0	0	1	1	1	0	XisH	protein
Zn_Tnp_IS91	PF14319.6	gi|529078574|ref|YP_008377577.1|	-	0.11	12.6	3.0	0.25	11.4	3.0	1.5	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
ParG	PF09274.10	gi|529078575|ref|YP_008377578.1|	-	1.6e-05	24.9	0.1	1.7e-05	24.8	0.1	1.0	1	0	0	1	1	1	1	ParG
RHH_1	PF01402.21	gi|529078575|ref|YP_008377578.1|	-	0.0018	18.1	0.0	0.0019	18.0	0.0	1.1	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
Y1_Tnp	PF01797.16	gi|529078576|ref|YP_008377579.1|	-	1.6e-09	37.9	0.1	1.7e-09	37.8	0.1	1.0	1	0	0	1	1	1	1	Transposase	IS200	like
DUF192	PF02643.15	gi|529078578|ref|YP_008377581.1|	-	2.3e-19	69.3	0.0	2.6e-19	69.1	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1430
MoeA_C	PF03454.15	gi|529078578|ref|YP_008377581.1|	-	0.011	15.9	0.1	0.021	15.0	0.1	1.4	1	0	0	1	1	1	0	MoeA	C-terminal	region	(domain	IV)
HMGL-like	PF00682.19	gi|529078579|ref|YP_008377582.1|	-	7.8e-67	225.6	3.6	7.8e-67	225.6	3.6	1.8	2	0	0	2	2	2	1	HMGL-like
LeuA_dimer	PF08502.10	gi|529078579|ref|YP_008377582.1|	-	5.7e-29	100.7	2.3	1e-28	99.9	2.3	1.4	1	0	0	1	1	1	1	LeuA	allosteric	(dimerisation)	domain
AP_endonuc_2	PF01261.24	gi|529078579|ref|YP_008377582.1|	-	0.041	13.3	0.2	0.041	13.3	0.2	2.2	3	0	0	3	3	3	0	Xylose	isomerase-like	TIM	barrel
TraC	PF07820.12	gi|529078579|ref|YP_008377582.1|	-	0.37	11.1	2.6	4.3	7.7	2.6	2.5	1	1	0	1	1	1	0	TraC-like	protein
DUF1380	PF07128.12	gi|529078579|ref|YP_008377582.1|	-	7.7	6.7	7.7	5.9	7.1	0.4	3.6	2	1	2	4	4	4	0	Protein	of	unknown	function	(DUF1380)
Multi_Drug_Res	PF00893.19	gi|529078580|ref|YP_008377583.1|	-	2.2e-28	98.8	5.2	3.1e-28	98.3	5.2	1.2	1	0	0	1	1	1	1	Small	Multidrug	Resistance	protein
EamA	PF00892.20	gi|529078580|ref|YP_008377583.1|	-	0.028	14.6	10.9	0.044	14.0	10.9	1.3	1	1	0	1	1	1	0	EamA-like	transporter	family
HAD_2	PF13419.6	gi|529078581|ref|YP_008377584.1|	-	5.2e-17	62.5	0.0	7.6e-17	62.0	0.0	1.3	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|529078581|ref|YP_008377584.1|	-	1.4e-08	34.7	0.1	3.3e-08	33.5	0.1	1.7	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.26	gi|529078581|ref|YP_008377584.1|	-	8.1e-08	32.8	0.4	3e-06	27.7	0.4	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|529078581|ref|YP_008377584.1|	-	0.021	15.2	1.9	0.052	13.9	1.9	1.7	1	1	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
LMWPc	PF01451.21	gi|529078583|ref|YP_008377586.1|	-	2.9e-20	73.1	0.2	6e-20	72.1	0.2	1.5	1	1	0	1	1	1	1	Low	molecular	weight	phosphotyrosine	protein	phosphatase
DUF3525	PF12039.8	gi|529078583|ref|YP_008377586.1|	-	0.091	11.5	0.2	0.096	11.4	0.2	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3525)
HTH_5	PF01022.20	gi|529078584|ref|YP_008377587.1|	-	5e-15	55.1	0.1	7.9e-15	54.5	0.1	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|529078584|ref|YP_008377587.1|	-	8e-11	41.8	0.0	1e-10	41.5	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|529078584|ref|YP_008377587.1|	-	0.00083	19.8	0.0	0.0012	19.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|529078584|ref|YP_008377587.1|	-	0.0051	16.7	0.0	0.0089	15.9	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
DUF2513	PF10711.9	gi|529078584|ref|YP_008377587.1|	-	0.012	15.8	0.0	0.016	15.5	0.0	1.5	1	1	0	1	1	1	0	Hypothetical	protein	(DUF2513)
MarR_2	PF12802.7	gi|529078584|ref|YP_008377587.1|	-	0.015	15.2	0.0	0.024	14.5	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_45	PF14947.6	gi|529078584|ref|YP_008377587.1|	-	0.037	14.0	0.0	0.062	13.3	0.0	1.6	1	1	0	1	1	1	0	Winged	helix-turn-helix
B-block_TFIIIC	PF04182.12	gi|529078584|ref|YP_008377587.1|	-	0.047	13.9	0.0	0.074	13.2	0.0	1.3	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
DUF4364	PF14277.6	gi|529078584|ref|YP_008377587.1|	-	0.084	12.6	0.0	0.12	12.1	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
Biliv-reduc_cat	PF09166.10	gi|529078584|ref|YP_008377587.1|	-	0.2	12.0	0.0	0.24	11.7	0.0	1.1	1	0	0	1	1	1	0	Biliverdin	reductase,	catalytic
Thioredoxin_3	PF13192.6	gi|529078585|ref|YP_008377588.1|	-	1.3e-21	76.4	0.8	1.4e-21	76.3	0.8	1.0	1	0	0	1	1	1	1	Thioredoxin	domain
Glutaredoxin	PF00462.24	gi|529078585|ref|YP_008377588.1|	-	0.0069	16.6	0.1	0.0098	16.1	0.1	1.3	1	0	0	1	1	1	1	Glutaredoxin
Thioredoxin_4	PF13462.6	gi|529078585|ref|YP_008377588.1|	-	0.023	14.8	0.3	6.3	6.9	0.1	2.0	1	1	1	2	2	2	0	Thioredoxin
HypD	PF01924.16	gi|529078585|ref|YP_008377588.1|	-	0.045	12.8	0.1	0.045	12.8	0.1	1.1	1	0	0	1	1	1	0	Hydrogenase	formation	hypA	family
DUF2703	PF10865.8	gi|529078585|ref|YP_008377588.1|	-	0.078	13.2	0.1	0.1	12.8	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2703)
ArsP_1	PF03773.13	gi|529078586|ref|YP_008377589.1|	-	1.6e-61	208.0	19.2	4.3e-60	203.4	19.2	2.0	1	1	0	1	1	1	1	Predicted	permease
DNase-RNase	PF02577.14	gi|529078587|ref|YP_008377590.1|	-	2.7e-36	124.1	0.0	3.3e-36	123.8	0.0	1.1	1	0	0	1	1	1	1	Bifunctional	nuclease
Nitro_FeMo-Co	PF02579.17	gi|529078588|ref|YP_008377591.1|	-	0.003	17.9	0.0	0.0035	17.7	0.0	1.0	1	0	0	1	1	1	1	Dinitrogenase	iron-molybdenum	cofactor
Na_H_Exchanger	PF00999.21	gi|529078589|ref|YP_008377592.1|	-	1.4e-37	129.4	37.2	1.7e-37	129.1	37.2	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
TrkA_N	PF02254.18	gi|529078589|ref|YP_008377592.1|	-	1.4e-31	109.1	0.5	4e-31	107.7	0.5	1.8	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|529078589|ref|YP_008377592.1|	-	2.5e-08	33.6	0.0	1.1e-07	31.6	0.0	2.1	1	0	0	1	1	1	1	TrkA-C	domain
NAD_binding_7	PF13241.6	gi|529078589|ref|YP_008377592.1|	-	9.5e-07	29.2	0.9	2.1e-06	28.1	0.2	1.9	2	0	0	2	2	2	1	Putative	NAD(P)-binding
F420_oxidored	PF03807.17	gi|529078589|ref|YP_008377592.1|	-	4.1e-05	24.1	0.1	0.00012	22.6	0.1	1.9	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Pyr_redox_2	PF07992.14	gi|529078589|ref|YP_008377592.1|	-	8.6e-05	21.9	0.1	0.00017	20.9	0.1	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.16	gi|529078589|ref|YP_008377592.1|	-	0.00046	19.9	0.0	0.00095	18.8	0.0	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Pyr_redox	PF00070.27	gi|529078589|ref|YP_008377592.1|	-	0.0008	19.9	0.1	0.0022	18.5	0.1	1.8	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|529078589|ref|YP_008377592.1|	-	0.0049	16.2	0.0	0.0077	15.5	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|529078589|ref|YP_008377592.1|	-	0.0055	16.1	0.0	0.011	15.1	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|529078589|ref|YP_008377592.1|	-	0.0071	16.6	0.1	0.015	15.6	0.1	1.6	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_2	PF03446.15	gi|529078589|ref|YP_008377592.1|	-	0.0086	16.3	0.0	0.017	15.3	0.0	1.5	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NTP_transf_3	PF12804.7	gi|529078589|ref|YP_008377592.1|	-	0.027	14.8	0.5	0.088	13.2	0.3	2.0	1	1	1	2	2	2	0	MobA-like	NTP	transferase	domain
Epimerase	PF01370.21	gi|529078589|ref|YP_008377592.1|	-	0.029	13.8	0.0	0.047	13.2	0.0	1.3	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
Shikimate_DH	PF01488.20	gi|529078589|ref|YP_008377592.1|	-	0.029	14.4	0.0	0.059	13.4	0.0	1.5	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
GFO_IDH_MocA	PF01408.22	gi|529078589|ref|YP_008377592.1|	-	0.039	14.8	0.0	0.078	13.8	0.0	1.5	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
DMT_6	PF04342.12	gi|529078589|ref|YP_008377592.1|	-	0.042	14.1	2.8	0.98	9.7	0.0	2.6	2	0	0	2	2	2	0	Putative	member	of	DMT	superfamily	(DUF486)
3HCDH_N	PF02737.18	gi|529078589|ref|YP_008377592.1|	-	0.066	13.1	0.4	0.15	11.9	0.1	1.8	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AdoHcyase_NAD	PF00670.21	gi|529078589|ref|YP_008377592.1|	-	0.08	13.0	0.0	0.24	11.4	0.0	1.8	2	0	0	2	2	2	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
Phage_integrase	PF00589.22	gi|529078592|ref|YP_008377595.1|	-	3.8e-16	59.4	0.0	9.2e-16	58.1	0.0	1.6	2	0	0	2	2	2	1	Phage	integrase	family
DZR	PF12773.7	gi|529078592|ref|YP_008377595.1|	-	0.0015	18.5	0.4	0.0027	17.7	0.4	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|529078592|ref|YP_008377595.1|	-	0.011	15.1	1.2	0.021	14.3	1.2	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
GP24_25	PF17388.2	gi|529078592|ref|YP_008377595.1|	-	0.33	10.9	2.3	5.9	6.9	0.1	2.4	2	0	0	2	2	2	0	Tail	assembly	gene	products	24	&	25
zinc_ribbon_2	PF13240.6	gi|529078592|ref|YP_008377595.1|	-	0.33	10.7	2.0	0.65	9.8	2.0	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
DnaJ	PF00226.31	gi|529078594|ref|YP_008377597.1|	-	1.9e-05	24.7	0.0	3.3e-05	23.9	0.0	1.4	1	0	0	1	1	1	1	DnaJ	domain
DUF1192	PF06698.11	gi|529078596|ref|YP_008377599.1|	-	0.052	13.6	5.1	0.67	10.0	0.4	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1192)
Spc7	PF08317.11	gi|529078596|ref|YP_008377599.1|	-	0.11	11.4	0.0	0.11	11.4	0.0	1.0	1	0	0	1	1	1	0	Spc7	kinetochore	protein
FUR	PF01475.19	gi|529078600|ref|YP_008377603.1|	-	0.065	13.4	0.0	0.066	13.4	0.0	1.1	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
HTH_45	PF14947.6	gi|529078600|ref|YP_008377603.1|	-	0.11	12.5	0.0	0.3	11.1	0.0	1.7	1	1	0	1	1	1	0	Winged	helix-turn-helix
zf-3CxxC	PF13695.6	gi|529078605|ref|YP_008377608.1|	-	0.037	14.5	5.7	0.07	13.6	0.9	2.4	2	0	0	2	2	2	0	Zinc-binding	domain
FpoO	PF10621.9	gi|529078605|ref|YP_008377608.1|	-	0.086	13.2	0.7	1.6	9.0	0.0	2.6	3	0	0	3	3	3	0	F420H2	dehydrogenase	subunit	FpoO
Cytochrom_c3_2	PF14537.6	gi|529078605|ref|YP_008377608.1|	-	2.6	8.5	7.7	0.91	10.0	1.0	2.5	2	1	0	2	2	2	0	Cytochrome	c3
TPR_12	PF13424.6	gi|529078606|ref|YP_008377609.1|	-	3.5e-79	261.1	59.6	2.1e-16	60.0	0.9	6.0	1	1	6	7	7	7	7	Tetratricopeptide	repeat
TPR_1	PF00515.28	gi|529078606|ref|YP_008377609.1|	-	3.7e-40	134.1	15.9	8.6e-07	28.5	0.1	8.2	8	0	0	8	8	8	7	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|529078606|ref|YP_008377609.1|	-	4.3e-35	117.1	24.0	4.9e-08	32.5	0.2	8.5	8	0	0	8	8	7	7	Tetratricopeptide	repeat
TPR_10	PF13374.6	gi|529078606|ref|YP_008377609.1|	-	5.6e-34	115.1	30.7	4.9e-06	26.2	0.1	8.6	8	0	0	8	8	7	7	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|529078606|ref|YP_008377609.1|	-	1.3e-27	93.7	15.6	1.1e-05	25.2	0.1	7.9	7	0	0	7	7	7	7	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|529078606|ref|YP_008377609.1|	-	7.5e-27	91.2	31.8	7.5e-06	25.7	0.1	9.1	9	0	0	9	9	8	6	Tetratricopeptide	repeat
TPR_MalT	PF17874.1	gi|529078606|ref|YP_008377609.1|	-	8.6e-11	41.8	8.7	1.7e-07	30.9	3.2	2.5	1	1	1	2	2	2	2	MalT-like	TPR	region
TPR_17	PF13431.6	gi|529078606|ref|YP_008377609.1|	-	1e-06	28.7	6.0	2.2	8.9	0.1	7.4	7	1	1	8	8	8	1	Tetratricopeptide	repeat
TPR_4	PF07721.14	gi|529078606|ref|YP_008377609.1|	-	1.6e-05	25.0	5.3	15	6.6	0.2	7.8	8	0	0	8	8	6	0	Tetratricopeptide	repeat
Fis1_TPR_C	PF14853.6	gi|529078606|ref|YP_008377609.1|	-	0.00015	21.7	15.6	0.28	11.3	0.1	6.7	7	0	0	7	7	7	2	Fis1	C-terminal	tetratricopeptide	repeat
TPR_3	PF07720.12	gi|529078606|ref|YP_008377609.1|	-	0.00021	21.2	11.1	0.48	10.5	0.1	5.0	5	0	0	5	5	4	2	Tetratricopeptide	repeat
DUF5112	PF17139.4	gi|529078606|ref|YP_008377609.1|	-	0.00025	20.6	0.1	4.7	6.6	0.0	3.9	4	0	0	4	4	4	1	Domain	of	unknown	function	(DUF5112)
TPR_14	PF13428.6	gi|529078606|ref|YP_008377609.1|	-	0.00072	20.2	25.2	10	7.3	0.2	9.0	8	1	1	9	9	7	0	Tetratricopeptide	repeat
TPR_16	PF13432.6	gi|529078606|ref|YP_008377609.1|	-	0.0015	19.1	40.7	0.022	15.4	0.1	6.9	6	1	2	9	9	6	4	Tetratricopeptide	repeat
ABC_tran	PF00005.27	gi|529078606|ref|YP_008377609.1|	-	0.0015	19.0	0.0	0.016	15.7	0.0	2.7	3	0	0	3	3	3	1	ABC	transporter
AAA_17	PF13207.6	gi|529078606|ref|YP_008377609.1|	-	0.0017	18.8	1.3	0.0092	16.4	0.0	2.9	3	0	0	3	3	2	1	AAA	domain
AAA_30	PF13604.6	gi|529078606|ref|YP_008377609.1|	-	0.0064	16.2	0.0	0.017	14.9	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
SNAP	PF14938.6	gi|529078606|ref|YP_008377609.1|	-	0.0094	15.4	0.5	1.6	8.0	0.2	2.5	2	0	0	2	2	2	1	Soluble	NSF	attachment	protein,	SNAP
TPR_9	PF13371.6	gi|529078606|ref|YP_008377609.1|	-	0.0096	16.1	22.1	1.2	9.4	0.4	7.4	4	3	3	7	7	7	2	Tetratricopeptide	repeat
TPR_6	PF13174.6	gi|529078606|ref|YP_008377609.1|	-	0.016	15.8	19.0	3.4	8.5	0.1	7.6	8	0	0	8	8	6	0	Tetratricopeptide	repeat
NACHT	PF05729.12	gi|529078606|ref|YP_008377609.1|	-	0.027	14.4	0.0	0.065	13.1	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
Cytidylate_kin	PF02224.18	gi|529078606|ref|YP_008377609.1|	-	0.041	13.6	0.6	5	6.8	0.0	2.8	2	1	0	3	3	3	0	Cytidylate	kinase
SPOB_a	PF14689.6	gi|529078606|ref|YP_008377609.1|	-	0.043	13.5	5.5	43	3.9	0.1	5.2	5	0	0	5	5	5	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
AAA_25	PF13481.6	gi|529078606|ref|YP_008377609.1|	-	0.052	13.1	0.3	0.21	11.1	0.3	2.1	1	1	0	1	1	1	0	AAA	domain
Integrase_1	PF12835.7	gi|529078606|ref|YP_008377609.1|	-	0.09	12.9	2.6	4.1	7.5	0.1	3.8	3	2	0	3	3	2	0	Integrase
Wzy_C_2	PF11846.8	gi|529078606|ref|YP_008377609.1|	-	0.14	12.1	1.0	14	5.6	0.0	3.0	2	2	1	3	3	3	0	Virulence	factor	membrane-bound	polymerase,	C-terminal
Chorion_2	PF03964.15	gi|529078606|ref|YP_008377609.1|	-	0.14	13.0	1.4	92	4.0	0.0	4.5	2	2	0	3	3	3	0	Chorion	family	2
ATP_bind_1	PF03029.17	gi|529078606|ref|YP_008377609.1|	-	0.15	11.8	0.1	0.49	10.1	0.0	1.9	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
ANAPC5	PF12862.7	gi|529078606|ref|YP_008377609.1|	-	0.16	12.0	10.3	15	5.7	0.0	5.5	5	2	1	6	6	4	0	Anaphase-promoting	complex	subunit	5
C_LFY_FLO	PF17538.2	gi|529078606|ref|YP_008377609.1|	-	0.17	11.4	0.8	10	5.6	0.0	3.4	4	0	0	4	4	4	0	DNA	Binding	Domain	(C-terminal)	Leafy/Floricaula
RNA_helicase	PF00910.22	gi|529078606|ref|YP_008377609.1|	-	0.21	12.0	0.0	0.84	10.1	0.0	1.9	2	0	0	2	2	1	0	RNA	helicase
MIT	PF04212.18	gi|529078606|ref|YP_008377609.1|	-	0.33	11.1	11.3	20	5.3	0.1	5.7	4	2	1	5	5	5	0	MIT	(microtubule	interacting	and	transport)	domain
TPR_19	PF14559.6	gi|529078606|ref|YP_008377609.1|	-	2.7	8.5	19.8	28	5.3	0.4	5.3	3	1	0	4	4	4	0	Tetratricopeptide	repeat
AAA_16	PF13191.6	gi|529078606|ref|YP_008377609.1|	-	6.4	7.1	9.0	1.1	9.7	0.7	3.6	3	2	0	3	3	3	0	AAA	ATPase	domain
Pentapeptide_4	PF13599.6	gi|529078608|ref|YP_008377611.1|	-	3.4e-29	100.8	0.9	2.3e-10	40.5	0.1	3.4	1	1	1	3	3	3	3	Pentapeptide	repeats	(9	copies)
Pentapeptide	PF00805.22	gi|529078608|ref|YP_008377611.1|	-	1.1e-28	98.5	20.7	2.2e-06	27.2	2.5	6.7	3	2	4	7	7	7	6	Pentapeptide	repeats	(8	copies)
Pentapeptide_3	PF13576.6	gi|529078608|ref|YP_008377611.1|	-	3.8e-14	52.6	13.8	0.001	19.2	0.6	6.3	1	1	5	6	6	6	5	Pentapeptide	repeats	(9	copies)
Ion_trans_2	PF07885.16	gi|529078608|ref|YP_008377611.1|	-	4.3e-13	49.0	0.9	9.4e-13	47.9	0.9	1.5	1	0	0	1	1	1	1	Ion	channel
UPF0236	PF06782.11	gi|529078609|ref|YP_008377612.1|	-	2.3e-06	26.5	0.0	0.00018	20.3	0.0	2.2	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|529078609|ref|YP_008377612.1|	-	0.0028	16.6	0.3	2.8	6.7	0.1	2.8	2	2	0	2	2	2	2	Transposase,	Mutator	family
DDE_Tnp_IS66	PF03050.14	gi|529078609|ref|YP_008377612.1|	-	0.0032	17.0	0.1	0.0046	16.5	0.1	1.2	1	0	0	1	1	1	1	Transposase	IS66	family
ASH	PF15780.5	gi|529078611|ref|YP_008377614.1|	-	0.0077	16.4	0.0	0.01	16.0	0.0	1.2	1	0	0	1	1	1	1	Abnormal	spindle-like	microcephaly-assoc'd,	ASPM-SPD-2-Hydin
BOF	PF04076.13	gi|529078611|ref|YP_008377614.1|	-	0.014	15.4	0.1	0.018	15.1	0.1	1.3	1	0	0	1	1	1	0	Bacterial	OB	fold	(BOF)	protein
Glyco_hydro_2	PF00703.21	gi|529078611|ref|YP_008377614.1|	-	0.052	14.2	0.1	0.063	14.0	0.1	1.2	1	0	0	1	1	1	0	Glycosyl	hydrolases	family	2
TAT_signal	PF10518.9	gi|529078611|ref|YP_008377614.1|	-	0.34	10.8	0.2	0.34	10.8	0.2	2.1	3	0	0	3	3	3	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
CARDB	PF07705.11	gi|529078612|ref|YP_008377615.1|	-	0.056	13.7	0.1	0.43	10.9	0.0	2.4	2	1	0	2	2	2	0	CARDB
DUF3426	PF11906.8	gi|529078612|ref|YP_008377615.1|	-	0.1	12.8	0.1	0.18	12.0	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3426)
Glyco_hydro_2	PF00703.21	gi|529078612|ref|YP_008377615.1|	-	0.1	13.2	0.1	0.39	11.4	0.0	2.1	2	0	0	2	2	2	0	Glycosyl	hydrolases	family	2
DUF553	PF04473.12	gi|529078612|ref|YP_008377615.1|	-	0.15	11.6	0.1	0.24	10.9	0.1	1.3	1	0	0	1	1	1	0	Transglutaminase-like	domain
CPSase_C	PF18302.1	gi|529078614|ref|YP_008377617.1|	-	0.091	13.2	1.0	1.1	9.9	0.8	2.4	2	0	0	2	2	2	0	Carbamoyl	phosphate	synthetase	C-terminal	domain
DUF1451	PF07295.11	gi|529078615|ref|YP_008377618.1|	-	0.002	18.2	1.0	0.0023	18.0	1.0	1.1	1	0	0	1	1	1	1	Zinc-ribbon	containing	domain
Zn-ribbon_8	PF09723.10	gi|529078615|ref|YP_008377618.1|	-	0.008	16.3	1.9	0.013	15.5	1.9	1.4	1	0	0	1	1	1	1	Zinc	ribbon	domain
ADK_lid	PF05191.14	gi|529078615|ref|YP_008377618.1|	-	0.0093	15.9	2.3	0.014	15.3	2.3	1.3	1	0	0	1	1	1	1	Adenylate	kinase,	active	site	lid
zf-TFIIB	PF13453.6	gi|529078615|ref|YP_008377618.1|	-	0.039	13.3	2.4	0.097	12.0	2.4	1.6	1	1	1	2	2	2	0	Transcription	factor	zinc-finger
HypA	PF01155.19	gi|529078615|ref|YP_008377618.1|	-	0.051	13.6	0.8	0.061	13.3	0.8	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF4199	PF13858.6	gi|529078615|ref|YP_008377618.1|	-	0.052	13.9	1.2	0.059	13.8	1.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4199)
Phage_holin_3_6	PF07332.11	gi|529078615|ref|YP_008377618.1|	-	0.094	12.8	0.3	0.11	12.5	0.3	1.1	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
PLDc_N	PF13396.6	gi|529078615|ref|YP_008377618.1|	-	0.12	12.3	11.5	0.14	12.1	10.5	1.7	1	1	1	2	2	2	0	Phospholipase_D-nuclease	N-terminal
TF_Zn_Ribbon	PF08271.12	gi|529078615|ref|YP_008377618.1|	-	0.15	11.6	3.4	0.25	10.9	3.4	1.3	1	0	0	1	1	1	0	TFIIB	zinc-binding
DUF4379	PF14311.6	gi|529078615|ref|YP_008377618.1|	-	0.18	12.2	0.9	0.26	11.7	0.9	1.3	1	0	0	1	1	1	0	Probable	Zinc-ribbon	domain
Zn_ribbon_SprT	PF17283.2	gi|529078615|ref|YP_008377618.1|	-	0.43	10.5	3.4	0.65	9.9	2.9	1.5	1	1	1	2	2	2	0	SprT-like	zinc	ribbon	domain
DUF4282	PF14110.6	gi|529078615|ref|YP_008377618.1|	-	1.4	9.7	6.1	1.9	9.3	6.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4282)
Rubredoxin_2	PF18073.1	gi|529078615|ref|YP_008377618.1|	-	1.5	8.6	4.8	2.5	7.9	0.4	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
HTH_20	PF12840.7	gi|529078617|ref|YP_008377620.1|	-	0.019	15.0	0.1	0.08	13.0	0.1	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|529078617|ref|YP_008377620.1|	-	0.12	11.9	0.2	0.18	11.4	0.2	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
YonK	PF09642.10	gi|529078618|ref|YP_008377621.1|	-	0.046	13.9	0.2	0.14	12.3	0.2	1.8	1	0	0	1	1	1	0	YonK	protein
YkyA	PF10368.9	gi|529078618|ref|YP_008377621.1|	-	0.2	11.3	2.1	0.3	10.7	2.1	1.2	1	0	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
HNH	PF01844.23	gi|529078619|ref|YP_008377622.1|	-	6.7e-11	42.2	5.6	9.9e-11	41.6	5.6	1.2	1	0	0	1	1	1	1	HNH	endonuclease
HNH_5	PF14279.6	gi|529078619|ref|YP_008377622.1|	-	1.5e-06	28.0	0.5	2.1e-06	27.5	0.5	1.2	1	0	0	1	1	1	1	HNH	endonuclease
HNH_2	PF13391.6	gi|529078619|ref|YP_008377622.1|	-	7.6e-05	22.8	1.8	0.0002	21.4	0.9	2.1	1	1	1	2	2	2	1	HNH	endonuclease
Zn-ribbon_8	PF09723.10	gi|529078619|ref|YP_008377622.1|	-	0.0037	17.4	1.7	0.018	15.2	1.7	2.1	1	1	0	1	1	1	1	Zinc	ribbon	domain
DZR	PF12773.7	gi|529078619|ref|YP_008377622.1|	-	0.015	15.3	0.3	0.024	14.7	0.3	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-AD	PF07776.15	gi|529078619|ref|YP_008377622.1|	-	0.047	13.9	0.6	0.12	12.6	0.6	1.8	1	1	0	1	1	1	0	Zinc-finger	associated	domain	(zf-AD)
zf-LITAF-like	PF10601.9	gi|529078619|ref|YP_008377622.1|	-	0.053	13.8	1.2	7.6	6.9	0.1	2.1	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
Thg1C	PF14413.6	gi|529078619|ref|YP_008377622.1|	-	0.056	13.6	0.0	0.073	13.2	0.0	1.2	1	0	0	1	1	1	0	Thg1	C	terminal	domain
zinc_ribbon_2	PF13240.6	gi|529078619|ref|YP_008377622.1|	-	0.083	12.6	3.2	1.8	8.4	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|529078619|ref|YP_008377622.1|	-	0.11	12.5	3.4	0.56	10.2	3.4	2.0	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Resolvase	PF00239.21	gi|529078620|ref|YP_008377623.1|	-	3e-34	118.2	3.0	4.2e-34	117.8	3.0	1.2	1	0	0	1	1	1	1	Resolvase,	N	terminal	domain
HTH_23	PF13384.6	gi|529078620|ref|YP_008377623.1|	-	6e-05	22.7	0.1	6e-05	22.7	0.1	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|529078620|ref|YP_008377623.1|	-	0.0012	18.9	0.1	0.003	17.7	0.1	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|529078620|ref|YP_008377623.1|	-	0.003	17.5	0.9	0.0066	16.4	0.2	1.9	2	0	0	2	2	2	1	Winged	helix-turn	helix
Phage_NinH	PF06322.11	gi|529078620|ref|YP_008377623.1|	-	0.004	17.0	1.4	0.0073	16.2	0.2	2.0	2	0	0	2	2	2	1	Phage	NinH	protein
Sigma70_r4	PF04545.16	gi|529078620|ref|YP_008377623.1|	-	0.011	15.2	0.3	0.028	13.9	0.0	1.8	2	0	0	2	2	2	0	Sigma-70,	region	4
Sigma70_r4_2	PF08281.12	gi|529078620|ref|YP_008377623.1|	-	0.013	15.1	0.0	0.031	13.9	0.0	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
DUF3479	PF11965.8	gi|529078620|ref|YP_008377623.1|	-	0.048	13.8	0.5	0.076	13.1	0.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3479)
HTH_8	PF02954.19	gi|529078620|ref|YP_008377623.1|	-	0.09	12.6	0.0	0.24	11.2	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
DUF812	PF05667.11	gi|529078620|ref|YP_008377623.1|	-	0.093	11.6	0.3	0.12	11.3	0.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
Toprim_3	PF13362.6	gi|529078620|ref|YP_008377623.1|	-	0.11	12.9	3.2	0.19	12.1	0.3	2.5	2	1	1	3	3	3	0	Toprim	domain
RHH_1	PF01402.21	gi|529078621|ref|YP_008377624.1|	-	8.1e-06	25.6	0.2	1.3e-05	25.0	0.2	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
HicB_lk_antitox	PF15919.5	gi|529078621|ref|YP_008377624.1|	-	0.07	13.2	0.0	0.092	12.9	0.0	1.2	1	0	0	1	1	1	0	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
ParE_toxin	PF05016.15	gi|529078622|ref|YP_008377625.1|	-	0.00039	21.0	0.1	0.0007	20.2	0.1	1.4	1	1	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
HicA_toxin	PF07927.12	gi|529078623|ref|YP_008377626.1|	-	2.9e-15	56.1	0.0	3.3e-15	55.9	0.0	1.1	1	0	0	1	1	1	1	HicA	toxin	of	bacterial	toxin-antitoxin,
DUF4625	PF15418.6	gi|529078623|ref|YP_008377626.1|	-	0.076	13.3	0.1	0.084	13.1	0.1	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4625)
HicB_lk_antitox	PF15919.5	gi|529078624|ref|YP_008377627.1|	-	0.14	12.3	0.1	0.15	12.2	0.1	1.1	1	0	0	1	1	1	0	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
A2M_BRD	PF07703.14	gi|529078629|ref|YP_008377632.1|	-	0.0062	16.9	3.5	0.019	15.3	0.3	2.5	1	1	1	2	2	2	1	Alpha-2-macroglobulin	bait	region	domain
DoxX_2	PF13564.6	gi|529078631|ref|YP_008377634.1|	-	1.6	8.8	12.9	0.34	11.0	2.8	2.2	2	0	0	2	2	2	0	DoxX-like	family
DUF347	PF03988.12	gi|529078632|ref|YP_008377635.1|	-	2.4	8.4	7.4	2.2	8.5	0.6	2.4	2	0	0	2	2	2	0	Repeat	of	Unknown	Function	(DUF347)
AAA_25	PF13481.6	gi|529078634|ref|YP_008377637.1|	-	3.2e-05	23.6	0.7	0.024	14.2	0.0	3.0	2	1	1	3	3	3	2	AAA	domain
AAA	PF00004.29	gi|529078634|ref|YP_008377637.1|	-	0.0014	19.1	0.0	0.0087	16.5	0.0	2.0	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zot	PF05707.12	gi|529078634|ref|YP_008377637.1|	-	0.0017	18.1	0.1	0.0079	15.8	0.1	1.9	1	1	0	1	1	1	1	Zonular	occludens	toxin	(Zot)
TIR-like	PF10137.9	gi|529078634|ref|YP_008377637.1|	-	0.0036	17.3	0.0	0.012	15.6	0.0	1.8	2	0	0	2	2	2	1	Predicted	nucleotide-binding	protein	containing	TIR-like	domain
AAA_22	PF13401.6	gi|529078634|ref|YP_008377637.1|	-	0.096	13.0	0.2	17	5.7	0.2	2.9	2	1	0	3	3	3	0	AAA	domain
Orexin_rec2	PF03827.13	gi|529078634|ref|YP_008377637.1|	-	0.15	12.1	0.3	5.3	7.1	0.1	2.9	3	0	0	3	3	3	0	Orexin	receptor	type	2
HisKA_4TM	PF16926.5	gi|529078635|ref|YP_008377638.1|	-	1.1e-13	51.1	1.9	1.9e-13	50.3	1.9	1.4	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
DUF2269	PF10027.9	gi|529078635|ref|YP_008377638.1|	-	0.12	12.4	0.3	3.2	7.8	0.1	2.3	2	0	0	2	2	2	0	Predicted	integral	membrane	protein	(DUF2269)
MarR_2	PF12802.7	gi|529078636|ref|YP_008377639.1|	-	3.9e-05	23.5	0.0	8.1e-05	22.4	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_29	PF13551.6	gi|529078636|ref|YP_008377639.1|	-	0.0023	17.9	0.0	0.0057	16.7	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn	helix
MarR	PF01047.22	gi|529078636|ref|YP_008377639.1|	-	0.014	15.3	0.0	0.026	14.4	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_24	PF13412.6	gi|529078636|ref|YP_008377639.1|	-	0.03	13.9	0.0	0.057	13.0	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Sel_put	PF04328.13	gi|529078636|ref|YP_008377639.1|	-	0.17	12.0	3.5	0.38	10.8	0.0	2.9	2	0	0	2	2	2	0	Selenoprotein,	putative
HTH_IclR	PF09339.10	gi|529078642|ref|YP_008377645.1|	-	3.4e-05	23.6	0.0	8e-05	22.4	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|529078642|ref|YP_008377645.1|	-	0.0045	16.9	0.0	0.0095	15.8	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|529078642|ref|YP_008377645.1|	-	0.008	15.7	0.0	0.013	15.0	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|529078642|ref|YP_008377645.1|	-	0.031	14.1	0.0	0.054	13.4	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|529078642|ref|YP_008377645.1|	-	0.18	11.7	0.4	0.53	10.2	0.1	1.8	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
MGC-24	PF05283.11	gi|529078642|ref|YP_008377645.1|	-	0.78	10.2	3.4	1.6	9.2	3.4	1.5	1	0	0	1	1	1	0	Multi-glycosylated	core	protein	24	(MGC-24),	sialomucin
FAD-oxidase_C	PF02913.19	gi|529078643|ref|YP_008377646.1|	-	3.3e-59	200.5	0.0	7e-59	199.5	0.0	1.6	2	0	0	2	2	2	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.23	gi|529078643|ref|YP_008377646.1|	-	4.4e-39	133.4	0.1	7.6e-39	132.6	0.1	1.4	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_17	PF13534.6	gi|529078643|ref|YP_008377646.1|	-	1.9e-09	37.9	3.2	3.6e-09	37.0	3.2	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|529078643|ref|YP_008377646.1|	-	1.2e-08	35.2	4.2	2.4e-08	34.3	4.2	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
CCG	PF02754.16	gi|529078643|ref|YP_008377646.1|	-	1.6e-07	31.4	0.0	5.5e-05	23.3	0.0	2.7	2	0	0	2	2	2	1	Cysteine-rich	domain
Fer4_10	PF13237.6	gi|529078643|ref|YP_008377646.1|	-	0.00056	20.0	3.3	0.014	15.5	0.3	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|529078643|ref|YP_008377646.1|	-	0.0024	18.0	3.1	0.041	14.1	0.4	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|529078643|ref|YP_008377646.1|	-	0.034	14.3	3.5	0.082	13.1	0.6	2.3	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Cytokin-bind	PF09265.10	gi|529078643|ref|YP_008377646.1|	-	0.21	11.0	0.0	0.59	9.5	0.0	1.6	2	0	0	2	2	2	0	Cytokinin	dehydrogenase	1,	FAD	and	cytokinin	binding
Fer4	PF00037.27	gi|529078643|ref|YP_008377646.1|	-	1	9.3	14.3	0.22	11.4	3.8	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|529078643|ref|YP_008377646.1|	-	1.2	9.8	8.6	14	6.3	9.1	2.3	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
MatE	PF01554.18	gi|529078644|ref|YP_008377647.1|	-	4.3e-62	208.5	31.0	1.5e-31	109.2	10.9	2.4	2	0	0	2	2	2	2	MatE
MurJ	PF03023.14	gi|529078644|ref|YP_008377647.1|	-	5.7e-06	25.2	20.8	0.00068	18.4	7.3	2.8	1	1	2	3	3	3	3	Lipid	II	flippase	MurJ
Polysacc_synt_C	PF14667.6	gi|529078644|ref|YP_008377647.1|	-	0.0015	18.6	9.5	0.0015	18.6	9.5	5.4	3	3	1	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
Ig_mannosidase	PF17753.1	gi|529078645|ref|YP_008377648.1|	-	2.3e-14	52.9	0.0	6.2e-14	51.5	0.0	1.8	1	0	0	1	1	1	1	Ig-fold	domain
Glyco_hydro_2_N	PF02837.18	gi|529078645|ref|YP_008377648.1|	-	6.5e-10	39.2	0.0	6e-09	36.0	0.0	2.2	2	0	0	2	2	2	1	Glycosyl	hydrolases	family	2,	sugar	binding	domain
Glyco_hydro_2	PF00703.21	gi|529078645|ref|YP_008377648.1|	-	1.3e-08	35.5	0.2	1.4e-07	32.2	0.0	2.4	2	0	0	2	2	2	1	Glycosyl	hydrolases	family	2
Mannosidase_ig	PF17786.1	gi|529078645|ref|YP_008377648.1|	-	4.5e-08	33.6	0.0	1.5e-07	31.9	0.0	1.9	1	0	0	1	1	1	1	Mannosidase	Ig/CBM-like	domain
Glyco_hydro_2_C	PF02836.17	gi|529078645|ref|YP_008377648.1|	-	0.00015	21.0	0.4	0.00072	18.8	0.4	1.9	1	1	0	1	1	1	1	Glycosyl	hydrolases	family	2,	TIM	barrel	domain
Ig_GlcNase	PF18368.1	gi|529078645|ref|YP_008377648.1|	-	0.0016	18.6	0.0	0.0092	16.1	0.0	2.3	1	1	0	1	1	1	1	Exo-beta-D-glucosaminidase	Ig-fold	domain
DUF1835	PF08874.10	gi|529078645|ref|YP_008377648.1|	-	0.15	12.3	0.3	0.34	11.1	0.3	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1835)
Cadherin-like	PF12733.7	gi|529078645|ref|YP_008377648.1|	-	0.15	12.6	3.8	11	6.6	0.0	3.2	3	1	0	3	3	3	0	Cadherin-like	beta	sandwich	domain
Usp	PF00582.26	gi|529078646|ref|YP_008377649.1|	-	2.7e-12	47.4	0.1	4.1e-12	46.8	0.1	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
NIF3	PF01784.18	gi|529078646|ref|YP_008377649.1|	-	0.054	13.1	0.0	0.065	12.8	0.0	1.1	1	0	0	1	1	1	0	NIF3	(NGG1p	interacting	factor	3)
AP_endonuc_2	PF01261.24	gi|529078646|ref|YP_008377649.1|	-	0.14	11.6	0.0	0.68	9.3	0.0	1.8	1	1	0	2	2	2	0	Xylose	isomerase-like	TIM	barrel
EF-G-binding_N	PF07299.11	gi|529078646|ref|YP_008377649.1|	-	0.14	12.7	0.1	0.28	11.7	0.1	1.6	1	0	0	1	1	1	0	Elongation	factor	G-binding	protein,	N-terminal
AP_endonuc_2	PF01261.24	gi|529078647|ref|YP_008377650.1|	-	1.3e-10	41.1	0.3	2e-09	37.2	0.2	2.1	1	1	1	2	2	2	2	Xylose	isomerase-like	TIM	barrel
HAMP	PF00672.25	gi|529078648|ref|YP_008377651.1|	-	7e-11	42.3	3.3	2.1e-05	24.8	0.1	3.8	3	1	0	3	3	3	2	HAMP	domain
DUF948	PF06103.11	gi|529078648|ref|YP_008377651.1|	-	0.0016	18.6	15.7	0.082	13.2	1.8	4.8	2	1	3	5	5	5	3	Bacterial	protein	of	unknown	function	(DUF948)
AAA_13	PF13166.6	gi|529078648|ref|YP_008377651.1|	-	0.0041	15.8	8.5	0.0074	15.0	8.5	1.4	1	0	0	1	1	1	1	AAA	domain
PilJ	PF13675.6	gi|529078648|ref|YP_008377651.1|	-	0.025	14.6	8.2	1.5	8.9	3.8	3.3	1	1	2	3	3	3	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
DUF3185	PF11381.8	gi|529078648|ref|YP_008377651.1|	-	0.034	14.1	2.3	1.9	8.5	0.1	3.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3185)
Dynamin_M	PF01031.20	gi|529078648|ref|YP_008377651.1|	-	0.039	13.2	4.3	0.064	12.5	3.5	1.7	1	1	0	1	1	1	0	Dynamin	central	region
Serine_rich	PF08824.10	gi|529078648|ref|YP_008377651.1|	-	0.067	13.2	2.9	0.17	11.9	2.9	1.8	1	0	0	1	1	1	0	Serine	rich	protein	interaction	domain
NPV_P10	PF05531.12	gi|529078648|ref|YP_008377651.1|	-	0.11	13.0	8.8	3.6	8.1	5.4	3.7	2	1	1	3	3	2	0	Nucleopolyhedrovirus	P10	protein
Sec34	PF04136.15	gi|529078648|ref|YP_008377651.1|	-	0.14	12.0	9.9	0.022	14.7	3.7	2.6	2	1	1	3	3	3	0	Sec34-like	family
DASH_Duo1	PF08651.10	gi|529078648|ref|YP_008377651.1|	-	0.18	11.6	2.3	0.49	10.2	0.2	2.7	2	1	0	2	2	2	0	DASH	complex	subunit	Duo1
MCPsignal	PF00015.21	gi|529078648|ref|YP_008377651.1|	-	0.26	11.1	19.5	5.3	6.8	1.7	3.4	1	1	0	2	2	2	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
KxDL	PF10241.9	gi|529078648|ref|YP_008377651.1|	-	0.34	11.2	5.2	1.3	9.3	0.6	3.3	2	1	0	2	2	2	0	Uncharacterized	conserved	protein
Syntaxin_2	PF14523.6	gi|529078648|ref|YP_008377651.1|	-	0.39	11.1	4.8	3.8	7.9	0.2	2.7	1	1	1	2	2	2	0	Syntaxin-like	protein
Osmo_CC	PF08946.10	gi|529078648|ref|YP_008377651.1|	-	0.41	10.9	6.7	0.14	12.4	1.7	2.9	2	0	0	2	2	2	0	Osmosensory	transporter	coiled	coil
RecG_N	PF17190.4	gi|529078648|ref|YP_008377651.1|	-	0.81	10.4	4.3	9.7	7.0	0.5	3.6	3	0	0	3	3	3	0	RecG	N-terminal	helical	domain
DUF2935	PF11155.8	gi|529078648|ref|YP_008377651.1|	-	1.1	9.5	3.5	53	4.2	3.6	3.1	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF2935)
CorA	PF01544.18	gi|529078648|ref|YP_008377651.1|	-	4.1	6.6	17.2	0.85	8.9	0.7	3.3	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
Rx_N	PF18052.1	gi|529078648|ref|YP_008377651.1|	-	5.9	7.2	18.0	0.29	11.4	1.3	3.4	2	1	1	3	3	3	0	Rx	N-terminal	domain
V_ATPase_I	PF01496.19	gi|529078648|ref|YP_008377651.1|	-	7	4.4	11.8	0.69	7.8	6.2	1.8	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
TPR_MLP1_2	PF07926.12	gi|529078648|ref|YP_008377651.1|	-	8.4	6.5	34.0	0.66	10.0	0.1	4.5	3	1	1	4	4	3	0	TPR/MLP1/MLP2-like	protein
DUF2130	PF09903.9	gi|529078648|ref|YP_008377651.1|	-	9.7	5.4	14.4	0.52	9.5	5.5	2.6	2	1	1	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2130)
HAMP	PF00672.25	gi|529078649|ref|YP_008377652.1|	-	1.8e-12	47.4	3.6	2.6e-07	30.9	0.1	3.8	3	1	0	3	3	3	2	HAMP	domain
DUF948	PF06103.11	gi|529078649|ref|YP_008377652.1|	-	0.0031	17.7	12.2	0.11	12.8	1.3	4.4	1	1	1	3	3	3	2	Bacterial	protein	of	unknown	function	(DUF948)
Phage_Nu1	PF07471.12	gi|529078649|ref|YP_008377652.1|	-	0.0084	15.9	0.6	0.0084	15.9	0.6	2.7	1	1	0	2	2	2	1	Phage	DNA	packaging	protein	Nu1
Sec34	PF04136.15	gi|529078649|ref|YP_008377652.1|	-	0.014	15.3	2.6	0.014	15.3	2.6	2.7	2	1	1	3	3	3	0	Sec34-like	family
NPV_P10	PF05531.12	gi|529078649|ref|YP_008377652.1|	-	0.041	14.3	7.4	1.2	9.7	4.8	3.6	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
PilJ	PF13675.6	gi|529078649|ref|YP_008377652.1|	-	0.05	13.6	9.0	2.4	8.2	3.9	3.5	1	1	2	3	3	3	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
Serine_rich	PF08824.10	gi|529078649|ref|YP_008377652.1|	-	0.056	13.4	2.7	0.14	12.1	2.7	1.8	1	0	0	1	1	1	0	Serine	rich	protein	interaction	domain
Dynamin_M	PF01031.20	gi|529078649|ref|YP_008377652.1|	-	0.093	11.9	5.4	0.088	12.0	3.9	1.7	1	1	0	1	1	1	0	Dynamin	central	region
Syntaxin_2	PF14523.6	gi|529078649|ref|YP_008377652.1|	-	0.099	13.0	3.7	1.5	9.3	0.1	2.9	1	1	1	2	2	2	0	Syntaxin-like	protein
AAA_13	PF13166.6	gi|529078649|ref|YP_008377652.1|	-	0.11	11.2	13.5	0.048	12.3	10.7	1.5	1	1	0	1	1	1	0	AAA	domain
DUF3243	PF11588.8	gi|529078649|ref|YP_008377652.1|	-	0.24	11.8	1.7	2.1	8.7	0.1	2.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3243)
MCPsignal	PF00015.21	gi|529078649|ref|YP_008377652.1|	-	0.31	10.8	19.9	0.24	11.2	5.2	3.5	1	1	1	3	3	3	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DUF725	PF05267.12	gi|529078649|ref|YP_008377652.1|	-	0.33	10.9	4.6	0.15	12.0	0.4	2.6	3	1	0	3	3	2	0	Protein	of	unknown	function	(DUF725)
KxDL	PF10241.9	gi|529078649|ref|YP_008377652.1|	-	0.78	10.1	5.7	4	7.8	0.6	3.4	2	1	0	2	2	2	0	Uncharacterized	conserved	protein
WXG100	PF06013.12	gi|529078649|ref|YP_008377652.1|	-	1.7	8.9	23.6	0.7	10.2	0.1	5.9	4	2	1	6	6	6	0	Proteins	of	100	residues	with	WXG
Exonuc_VII_L	PF02601.15	gi|529078649|ref|YP_008377652.1|	-	2.1	7.9	9.6	10	5.6	9.6	2.1	1	1	0	1	1	1	0	Exonuclease	VII,	large	subunit
RecG_N	PF17190.4	gi|529078649|ref|YP_008377652.1|	-	2.6	8.8	5.6	12	6.8	0.4	3.5	3	0	0	3	3	3	0	RecG	N-terminal	helical	domain
MCR_alpha	PF02249.17	gi|529078649|ref|YP_008377652.1|	-	2.9	8.3	4.8	9	6.8	0.4	3.4	2	1	0	3	3	3	0	Methyl-coenzyme	M	reductase	alpha	subunit,	C-terminal	domain
DUF1664	PF07889.12	gi|529078649|ref|YP_008377652.1|	-	3	7.9	15.0	0.42	10.7	3.6	3.7	1	1	0	3	3	3	0	Protein	of	unknown	function	(DUF1664)
TMPIT	PF07851.13	gi|529078649|ref|YP_008377652.1|	-	3.3	6.9	10.4	0.16	11.2	1.4	2.6	1	1	1	2	2	2	0	TMPIT-like	protein
Osmo_CC	PF08946.10	gi|529078649|ref|YP_008377652.1|	-	3.5	8.0	7.6	0.56	10.5	1.7	2.9	3	0	0	3	3	1	0	Osmosensory	transporter	coiled	coil
CorA	PF01544.18	gi|529078649|ref|YP_008377652.1|	-	4.6	6.5	17.4	0.87	8.8	1.2	3.3	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
kleA_kleC	PF17383.2	gi|529078649|ref|YP_008377652.1|	-	5.5	7.4	12.4	0.23	11.8	1.0	3.9	2	1	1	3	3	3	0	Uncharacterized	KorC	regulated	protein	A
V_ATPase_I	PF01496.19	gi|529078649|ref|YP_008377652.1|	-	5.9	4.7	11.4	0.68	7.8	5.9	1.7	1	1	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
IFT57	PF10498.9	gi|529078649|ref|YP_008377652.1|	-	7.5	5.4	17.2	11	4.8	13.6	2.5	1	1	1	2	2	2	0	Intra-flagellar	transport	protein	57
Rx_N	PF18052.1	gi|529078649|ref|YP_008377652.1|	-	8.6	6.7	18.5	0.39	11.0	1.6	3.4	2	1	1	3	3	3	0	Rx	N-terminal	domain
FGGY_N	PF00370.21	gi|529078650|ref|YP_008377653.1|	-	6.6e-77	258.4	0.0	8.3e-77	258.0	0.0	1.1	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
FGGY_C	PF02782.16	gi|529078650|ref|YP_008377653.1|	-	3.3e-35	121.6	0.0	5.3e-35	121.0	0.0	1.3	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
DNA_pol_B_thumb	PF14791.6	gi|529078651|ref|YP_008377654.1|	-	7.5e-24	83.7	0.0	2e-23	82.3	0.0	1.8	1	0	0	1	1	1	1	DNA	polymerase	beta	thumb
HHH_8	PF14716.6	gi|529078651|ref|YP_008377654.1|	-	8.8e-20	70.9	6.6	2.6e-17	63.0	2.1	3.7	2	1	1	3	3	3	1	Helix-hairpin-helix	domain
HHH_5	PF14520.6	gi|529078651|ref|YP_008377654.1|	-	5e-17	62.3	1.8	6.7e-13	49.0	0.1	3.4	2	0	0	2	2	2	2	Helix-hairpin-helix	domain
PHP	PF02811.19	gi|529078651|ref|YP_008377654.1|	-	5.7e-09	36.5	0.0	1e-08	35.7	0.0	1.5	1	0	0	1	1	1	1	PHP	domain
DNA_pol_lambd_f	PF10391.9	gi|529078651|ref|YP_008377654.1|	-	6.4e-05	22.7	0.0	0.00038	20.2	0.0	2.3	2	0	0	2	2	2	1	Fingers	domain	of	DNA	polymerase	lambda
HHH_2	PF12826.7	gi|529078651|ref|YP_008377654.1|	-	0.00031	20.8	5.3	0.018	15.2	0.2	3.2	2	1	2	4	4	4	2	Helix-hairpin-helix	motif
DNA_pol_B_palm	PF14792.6	gi|529078651|ref|YP_008377654.1|	-	0.00095	19.4	0.0	0.0023	18.1	0.0	1.7	1	0	0	1	1	1	1	DNA	polymerase	beta	palm
HHH	PF00633.23	gi|529078651|ref|YP_008377654.1|	-	0.0078	16.0	3.2	0.048	13.6	0.1	3.5	2	1	2	4	4	4	1	Helix-hairpin-helix	motif
HHH_3	PF12836.7	gi|529078651|ref|YP_008377654.1|	-	0.012	15.8	0.1	6	7.2	0.0	3.3	3	0	0	3	3	3	0	Helix-hairpin-helix	motif
NUC194	PF08163.12	gi|529078652|ref|YP_008377655.1|	-	0.055	12.4	0.0	0.075	12.0	0.0	1.1	1	0	0	1	1	1	0	NUC194	domain
Rhomboid	PF01694.22	gi|529078653|ref|YP_008377656.1|	-	1.7e-28	99.5	16.0	1.7e-28	99.5	16.0	1.4	2	0	0	2	2	2	1	Rhomboid	family
zf-AN1	PF01428.16	gi|529078653|ref|YP_008377656.1|	-	2.4e-12	46.8	8.6	3.5e-12	46.3	8.6	1.2	1	0	0	1	1	1	1	AN1-like	Zinc	finger
DUF1751	PF08551.10	gi|529078653|ref|YP_008377656.1|	-	0.00092	19.7	1.1	0.00092	19.7	1.1	2.1	2	1	1	3	3	3	1	Eukaryotic	integral	membrane	protein	(DUF1751)
FYVE	PF01363.21	gi|529078653|ref|YP_008377656.1|	-	0.0069	16.5	0.9	0.0092	16.1	0.9	1.2	1	0	0	1	1	1	1	FYVE	zinc	finger
C1_2	PF03107.16	gi|529078653|ref|YP_008377656.1|	-	0.071	13.4	3.8	0.11	12.8	3.8	1.3	1	0	0	1	1	1	0	C1	domain
Endonuclease_5	PF04493.14	gi|529078654|ref|YP_008377657.1|	-	2.6e-55	187.2	0.0	3.2e-55	186.9	0.0	1.1	1	0	0	1	1	1	1	Endonuclease	V
UvrC_HhH_N	PF08459.11	gi|529078654|ref|YP_008377657.1|	-	0.086	12.7	0.0	0.16	11.9	0.0	1.4	1	1	0	1	1	1	0	UvrC	Helix-hairpin-helix	N-terminal
Acetyltransf_1	PF00583.25	gi|529078654|ref|YP_008377657.1|	-	0.15	12.3	0.0	0.37	11.0	0.0	1.6	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	family
adh_short	PF00106.25	gi|529078655|ref|YP_008377658.1|	-	6.6e-50	169.3	0.0	8.1e-50	169.0	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|529078655|ref|YP_008377658.1|	-	2.9e-41	141.6	0.1	4e-41	141.1	0.1	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|529078655|ref|YP_008377658.1|	-	2e-10	40.9	0.0	3.1e-10	40.2	0.0	1.3	1	0	0	1	1	1	1	KR	domain
DUF1776	PF08643.10	gi|529078655|ref|YP_008377658.1|	-	2.2e-09	37.1	0.0	2.9e-09	36.7	0.0	1.1	1	0	0	1	1	1	1	Fungal	family	of	unknown	function	(DUF1776)
Epimerase	PF01370.21	gi|529078655|ref|YP_008377658.1|	-	4.1e-07	29.7	0.1	3.3e-06	26.7	0.1	2.3	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.17	gi|529078655|ref|YP_008377658.1|	-	0.021	13.9	0.6	0.032	13.3	0.1	1.5	2	0	0	2	2	2	0	RmlD	substrate	binding	domain
HHH	PF00633.23	gi|529078655|ref|YP_008377658.1|	-	0.15	12.0	0.1	25	5.0	0.0	3.2	3	0	0	3	3	3	0	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|529078655|ref|YP_008377658.1|	-	0.16	12.6	0.0	2.3	8.9	0.0	2.6	2	0	0	2	2	2	0	Helix-hairpin-helix	domain
DUF4147	PF13660.6	gi|529078656|ref|YP_008377659.1|	-	4e-76	255.6	1.8	6.7e-76	254.8	1.8	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4147)
MOFRL	PF05161.13	gi|529078656|ref|YP_008377659.1|	-	1.7e-29	102.2	2.5	4.3e-29	100.9	2.5	1.8	1	0	0	1	1	1	1	MOFRL	family
PSK_trans_fac	PF07704.11	gi|529078657|ref|YP_008377660.1|	-	0.0073	17.0	2.9	0.018	15.8	2.9	1.6	1	1	0	1	1	1	1	Rv0623-like	transcription	factor
RHH_8	PF17723.1	gi|529078657|ref|YP_008377660.1|	-	0.035	14.3	0.3	0.041	14.1	0.3	1.2	1	0	0	1	1	1	0	Ribbon-Helix-Helix	transcriptional	regulator	family
PIN_9	PF18477.1	gi|529078658|ref|YP_008377661.1|	-	0.0038	17.5	0.2	0.0058	16.9	0.2	1.3	1	0	0	1	1	1	1	PIN	like	domain
adh_short	PF00106.25	gi|529078659|ref|YP_008377662.1|	-	2.8e-37	128.1	0.0	3.7e-37	127.7	0.0	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|529078659|ref|YP_008377662.1|	-	4.7e-32	111.4	0.0	6e-32	111.1	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|529078659|ref|YP_008377662.1|	-	3.3e-06	27.1	0.1	0.00047	20.1	0.0	2.1	2	0	0	2	2	2	2	KR	domain
NAD_binding_10	PF13460.6	gi|529078659|ref|YP_008377662.1|	-	1.8e-05	24.7	0.2	2e-05	24.6	0.2	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
Epimerase	PF01370.21	gi|529078659|ref|YP_008377662.1|	-	9.9e-05	21.9	0.0	0.00013	21.6	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
ArsA_ATPase	PF02374.15	gi|529078660|ref|YP_008377663.1|	-	9.4e-81	271.3	0.0	1.4e-80	270.7	0.0	1.3	1	1	0	1	1	1	1	Anion-transporting	ATPase
CbiA	PF01656.23	gi|529078660|ref|YP_008377663.1|	-	6.1e-09	36.0	0.0	1.3e-08	34.9	0.0	1.6	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|529078660|ref|YP_008377663.1|	-	2.1e-06	27.8	0.0	1.6e-05	24.9	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
ParA	PF10609.9	gi|529078660|ref|YP_008377663.1|	-	4.1e-05	23.1	0.2	0.0024	17.3	0.0	2.5	3	0	0	3	3	3	1	NUBPL	iron-transfer	P-loop	NTPase
SRP54	PF00448.22	gi|529078660|ref|YP_008377663.1|	-	0.0012	18.5	0.1	0.26	10.9	0.2	2.3	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
Fer4_NifH	PF00142.18	gi|529078660|ref|YP_008377663.1|	-	0.0095	15.4	0.0	0.016	14.6	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
ATPase	PF06745.13	gi|529078660|ref|YP_008377663.1|	-	0.01	15.2	0.0	0.022	14.1	0.0	1.5	1	0	0	1	1	1	0	KaiC
PhoH	PF02562.16	gi|529078660|ref|YP_008377663.1|	-	0.017	14.6	0.0	0.029	13.8	0.0	1.3	1	0	0	1	1	1	0	PhoH-like	protein
CBP_BcsQ	PF06564.12	gi|529078660|ref|YP_008377663.1|	-	0.024	14.1	0.0	0.039	13.4	0.0	1.3	1	0	0	1	1	1	0	Cellulose	biosynthesis	protein	BcsQ
AAA_16	PF13191.6	gi|529078660|ref|YP_008377663.1|	-	0.038	14.4	0.2	0.08	13.3	0.2	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_25	PF13481.6	gi|529078660|ref|YP_008377663.1|	-	0.043	13.4	3.2	0.096	12.3	0.1	2.8	4	0	0	4	4	4	0	AAA	domain
IstB_IS21	PF01695.17	gi|529078660|ref|YP_008377663.1|	-	0.08	12.7	0.0	0.15	11.8	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
Zeta_toxin	PF06414.12	gi|529078660|ref|YP_008377663.1|	-	0.1	11.8	0.1	0.21	10.8	0.1	1.4	1	0	0	1	1	1	0	Zeta	toxin
Helicase_C_2	PF13307.6	gi|529078662|ref|YP_008377665.1|	-	3.5e-23	82.6	0.0	5.5e-23	82.0	0.0	1.3	1	0	0	1	1	1	1	Helicase	C-terminal	domain
DEAD_2	PF06733.15	gi|529078662|ref|YP_008377665.1|	-	1.7e-11	44.1	0.0	7.7e-10	38.7	0.0	2.1	2	0	0	2	2	2	1	DEAD_2
DEAD	PF00270.29	gi|529078662|ref|YP_008377665.1|	-	7.4e-10	38.9	0.0	0.00023	21.0	0.0	2.3	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
PhoH	PF02562.16	gi|529078662|ref|YP_008377665.1|	-	2.2e-07	30.6	0.1	9.8e-05	21.9	0.0	2.2	2	0	0	2	2	2	2	PhoH-like	protein
ResIII	PF04851.15	gi|529078662|ref|YP_008377665.1|	-	3.2e-07	30.5	0.0	0.00065	19.7	0.0	2.2	2	0	0	2	2	2	2	Type	III	restriction	enzyme,	res	subunit
AAA_30	PF13604.6	gi|529078662|ref|YP_008377665.1|	-	0.0002	21.1	1.0	0.039	13.7	0.1	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_22	PF13401.6	gi|529078662|ref|YP_008377665.1|	-	0.0011	19.2	0.0	0.41	10.9	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
AAA_19	PF13245.6	gi|529078662|ref|YP_008377665.1|	-	0.0011	19.3	0.0	0.68	10.3	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
SNF2_N	PF00176.23	gi|529078662|ref|YP_008377665.1|	-	0.053	12.2	0.0	0.089	11.5	0.0	1.2	1	0	0	1	1	1	0	SNF2	family	N-terminal	domain
Mg_chelatase	PF01078.21	gi|529078662|ref|YP_008377665.1|	-	0.14	11.6	0.1	0.3	10.4	0.0	1.6	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_11	PF13086.6	gi|529078662|ref|YP_008377665.1|	-	0.18	11.6	0.0	0.43	10.3	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
DUF2075	PF09848.9	gi|529078662|ref|YP_008377665.1|	-	0.21	10.8	0.0	11	5.1	0.0	2.1	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
APH	PF01636.23	gi|529078663|ref|YP_008377666.1|	-	3.3e-22	79.6	0.6	5.1e-22	79.0	0.6	1.3	1	0	0	1	1	1	1	Phosphotransferase	enzyme	family
CinA	PF02464.17	gi|529078664|ref|YP_008377667.1|	-	5.9e-56	188.3	0.1	6.8e-56	188.1	0.1	1.0	1	0	0	1	1	1	1	Competence-damaged	protein
DcrB	PF08786.11	gi|529078664|ref|YP_008377667.1|	-	0.083	13.0	0.0	0.13	12.4	0.0	1.2	1	0	0	1	1	1	0	DcrB
YdjM	PF04307.14	gi|529078665|ref|YP_008377668.1|	-	3.7e-10	39.4	4.4	4.3e-09	35.9	4.4	2.0	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Zn_dep_PLPC	PF00882.18	gi|529078665|ref|YP_008377668.1|	-	0.018	15.1	0.2	0.045	13.7	0.2	1.6	1	1	0	1	1	1	0	Zinc	dependent	phospholipase	C
Helicase_C_3	PF13625.6	gi|529078665|ref|YP_008377668.1|	-	0.076	13.2	0.2	1.8	8.7	0.1	2.0	2	0	0	2	2	2	0	Helicase	conserved	C-terminal	domain
PHP_C	PF13263.6	gi|529078666|ref|YP_008377669.1|	-	2.8e-17	62.2	0.4	5.4e-17	61.3	0.0	1.7	2	0	0	2	2	2	1	PHP-associated
zf-C2H2	PF00096.26	gi|529078667|ref|YP_008377670.1|	-	2.4e-05	24.5	0.0	0.0018	18.7	0.0	2.5	2	0	0	2	2	2	1	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.6	gi|529078667|ref|YP_008377670.1|	-	0.0025	18.5	0.1	0.14	13.1	0.0	2.5	2	0	0	2	2	2	1	C2H2-type	zinc	finger
Acetyltransf_1	PF00583.25	gi|529078668|ref|YP_008377671.1|	-	6.7e-08	32.8	0.1	1.3e-07	31.8	0.0	1.5	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|529078668|ref|YP_008377671.1|	-	0.0012	18.8	0.0	0.002	18.0	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|529078668|ref|YP_008377671.1|	-	0.0018	18.3	0.0	0.0028	17.7	0.0	1.3	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_3	PF13302.7	gi|529078668|ref|YP_008377671.1|	-	0.0061	17.2	0.0	0.0099	16.6	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|529078668|ref|YP_008377671.1|	-	0.0074	16.7	0.0	0.011	16.1	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Usg	PF06233.12	gi|529078668|ref|YP_008377671.1|	-	0.028	14.6	0.0	0.047	13.8	0.0	1.2	1	0	0	1	1	1	0	Usg-like	family
ThiC_Rad_SAM	PF01964.18	gi|529078669|ref|YP_008377672.1|	-	9.6e-188	624.2	0.0	1.1e-187	624.0	0.0	1.0	1	0	0	1	1	1	1	Radical	SAM	ThiC	family
DUF2237	PF09996.9	gi|529078670|ref|YP_008377673.1|	-	1.5e-48	163.6	0.0	1.7e-48	163.4	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2237)
tRNA_deacylase	PF04414.12	gi|529078671|ref|YP_008377674.1|	-	5.1e-63	212.3	0.0	6.8e-63	211.9	0.0	1.2	1	0	0	1	1	1	1	D-aminoacyl-tRNA	deacylase
XFP_N	PF09364.10	gi|529078671|ref|YP_008377674.1|	-	0.23	10.2	0.0	0.9	8.3	0.0	1.8	2	0	0	2	2	2	0	XFP	N-terminal	domain
Na_Ca_ex	PF01699.24	gi|529078672|ref|YP_008377675.1|	-	9.2e-17	61.4	32.6	3.1e-09	37.0	10.5	2.5	3	0	0	3	3	3	2	Sodium/calcium	exchanger	protein
Shikimate_dh_N	PF08501.11	gi|529078673|ref|YP_008377676.1|	-	1e-25	89.8	0.0	2.1e-25	88.7	0.0	1.5	1	0	0	1	1	1	1	Shikimate	dehydrogenase	substrate	binding	domain
SDH_C	PF18317.1	gi|529078673|ref|YP_008377676.1|	-	2.6e-13	49.5	4.3	9.2e-13	47.7	0.7	2.5	2	0	0	2	2	2	1	Shikimate	5'-dehydrogenase	C-terminal	domain
Shikimate_DH	PF01488.20	gi|529078673|ref|YP_008377676.1|	-	7.7e-11	42.2	0.1	1.3e-10	41.5	0.1	1.3	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|529078673|ref|YP_008377676.1|	-	0.00027	21.2	0.8	0.00098	19.4	0.8	1.9	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
adh_short	PF00106.25	gi|529078673|ref|YP_008377676.1|	-	0.0013	18.2	0.9	0.0024	17.3	0.9	1.4	1	1	0	1	1	1	1	short	chain	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|529078673|ref|YP_008377676.1|	-	0.0025	17.2	0.1	0.004	16.5	0.1	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|529078673|ref|YP_008377676.1|	-	0.0043	16.6	0.8	0.014	15.0	0.2	1.9	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
F420_oxidored	PF03807.17	gi|529078673|ref|YP_008377676.1|	-	0.0053	17.3	0.2	0.011	16.3	0.2	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
HHH_5	PF14520.6	gi|529078674|ref|YP_008377677.1|	-	6.8e-11	42.6	0.1	1.7e-10	41.3	0.1	1.7	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
DUF4332	PF14229.6	gi|529078674|ref|YP_008377677.1|	-	0.0017	18.5	0.1	0.13	12.4	0.0	2.1	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4332)
Cdd1	PF11731.8	gi|529078674|ref|YP_008377677.1|	-	0.01	16.0	0.0	0.016	15.4	0.0	1.3	1	0	0	1	1	1	0	Pathogenicity	locus
HHH	PF00633.23	gi|529078674|ref|YP_008377677.1|	-	0.079	12.9	0.0	0.28	11.1	0.0	2.0	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
DNA_pol_lambd_f	PF10391.9	gi|529078674|ref|YP_008377677.1|	-	0.097	12.5	0.0	0.17	11.7	0.0	1.4	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
DUF966	PF06136.13	gi|529078674|ref|YP_008377677.1|	-	0.49	10.1	8.0	0.56	9.9	8.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF966)
Pneumo_att_G	PF05539.11	gi|529078674|ref|YP_008377677.1|	-	1.7	8.2	14.9	1.9	8.0	14.9	1.1	1	0	0	1	1	1	0	Pneumovirinae	attachment	membrane	glycoprotein	G
SDA1	PF05285.12	gi|529078674|ref|YP_008377677.1|	-	4	6.8	16.1	4.5	6.6	16.1	1.1	1	0	0	1	1	1	0	SDA1
Presenilin	PF01080.17	gi|529078674|ref|YP_008377677.1|	-	4.1	6.1	5.8	4.2	6.0	5.8	1.1	1	0	0	1	1	1	0	Presenilin
LAP1C	PF05609.12	gi|529078674|ref|YP_008377677.1|	-	7.7	5.5	12.0	10	5.1	12.0	1.2	1	0	0	1	1	1	0	Lamina-associated	polypeptide	1C	(LAP1C)
RR_TM4-6	PF06459.12	gi|529078674|ref|YP_008377677.1|	-	9.7	5.9	8.9	11	5.7	8.9	1.2	1	0	0	1	1	1	0	Ryanodine	Receptor	TM	4-6
Chorismate_bind	PF00425.18	gi|529078675|ref|YP_008377678.1|	-	3.2e-101	338.2	0.0	4.9e-101	337.6	0.0	1.3	1	0	0	1	1	1	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.13	gi|529078675|ref|YP_008377678.1|	-	2.4e-11	44.0	0.0	8.5e-10	39.0	0.0	3.0	3	1	0	3	3	3	1	Anthranilate	synthase	component	I,	N	terminal	region
GATase	PF00117.28	gi|529078676|ref|YP_008377679.1|	-	2.2e-37	128.7	0.0	3.2e-37	128.2	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|529078676|ref|YP_008377679.1|	-	1e-08	35.2	0.0	2.4e-08	34.0	0.0	1.6	1	1	0	1	1	1	1	Peptidase	C26
Aminotran_4	PF01063.19	gi|529078677|ref|YP_008377680.1|	-	5.6e-51	173.5	0.0	6.5e-51	173.3	0.0	1.0	1	0	0	1	1	1	1	Amino-transferase	class	IV
ADH_zinc_N	PF00107.26	gi|529078677|ref|YP_008377680.1|	-	0.061	13.3	0.0	0.12	12.4	0.0	1.4	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
ABC2_membrane	PF01061.24	gi|529078678|ref|YP_008377681.1|	-	5.6e-26	91.3	8.9	5.6e-26	91.3	8.9	1.5	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|529078678|ref|YP_008377681.1|	-	2.1e-15	56.7	0.8	2.1e-15	56.7	0.8	2.0	1	1	1	2	2	2	2	ABC-2	family	transporter	protein
12TM_1	PF09847.9	gi|529078678|ref|YP_008377681.1|	-	0.00011	21.5	0.6	0.00014	21.1	0.6	1.1	1	0	0	1	1	1	1	Membrane	protein	of	12	TMs
ABC2_membrane_2	PF12679.7	gi|529078678|ref|YP_008377681.1|	-	0.00024	20.5	13.4	0.001	18.4	13.4	2.0	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
DUF2678	PF10856.8	gi|529078678|ref|YP_008377681.1|	-	0.17	11.8	1.9	0.23	11.4	0.8	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2678)
Trep_Strep	PF09605.10	gi|529078678|ref|YP_008377681.1|	-	6.6	6.7	17.3	0.076	13.0	6.9	2.6	3	0	0	3	3	3	0	Hypothetical	bacterial	integral	membrane	protein	(Trep_Strep)
ABC_tran	PF00005.27	gi|529078679|ref|YP_008377682.1|	-	1.9e-27	96.5	0.0	2.8e-27	95.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529078679|ref|YP_008377682.1|	-	2.9e-15	56.8	0.0	9.3e-09	35.5	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|529078679|ref|YP_008377682.1|	-	2.6e-05	24.1	0.0	0.16	11.6	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.6	gi|529078679|ref|YP_008377682.1|	-	8.9e-05	23.1	0.0	0.00013	22.5	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|529078679|ref|YP_008377682.1|	-	0.0047	16.7	0.2	0.048	13.4	0.1	2.4	2	1	1	3	3	3	1	AAA	domain
SMC_N	PF02463.19	gi|529078679|ref|YP_008377682.1|	-	0.0052	16.3	0.0	0.36	10.2	0.0	2.5	3	0	0	3	3	3	1	RecF/RecN/SMC	N	terminal	domain
IstB_IS21	PF01695.17	gi|529078679|ref|YP_008377682.1|	-	0.0053	16.5	0.0	0.23	11.2	0.0	2.2	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_16	PF13191.6	gi|529078679|ref|YP_008377682.1|	-	0.0062	16.9	0.1	0.012	16.0	0.1	1.4	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_33	PF13671.6	gi|529078679|ref|YP_008377682.1|	-	0.012	15.8	0.1	0.15	12.2	0.1	2.2	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|529078679|ref|YP_008377682.1|	-	0.013	15.9	0.0	0.027	14.9	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|529078679|ref|YP_008377682.1|	-	0.031	14.0	0.1	0.066	13.0	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
MMR_HSR1	PF01926.23	gi|529078679|ref|YP_008377682.1|	-	0.032	14.3	0.1	0.37	10.9	0.0	2.2	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
TsaE	PF02367.17	gi|529078679|ref|YP_008377682.1|	-	0.054	13.5	0.0	0.091	12.8	0.0	1.3	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
DUF4162	PF13732.6	gi|529078679|ref|YP_008377682.1|	-	0.065	14.0	0.0	0.22	12.3	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4162)
AAA_28	PF13521.6	gi|529078679|ref|YP_008377682.1|	-	0.07	13.4	0.0	0.16	12.2	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|529078679|ref|YP_008377682.1|	-	0.073	13.3	0.0	0.13	12.6	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|529078679|ref|YP_008377682.1|	-	0.081	13.5	0.2	1.1	9.8	0.1	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_27	PF13514.6	gi|529078679|ref|YP_008377682.1|	-	0.12	12.0	0.1	0.28	10.8	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.22	gi|529078679|ref|YP_008377682.1|	-	0.12	11.5	0.1	0.2	10.8	0.1	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_5	PF07728.14	gi|529078679|ref|YP_008377682.1|	-	0.14	12.1	0.0	0.96	9.4	0.0	2.1	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
Zeta_toxin	PF06414.12	gi|529078679|ref|YP_008377682.1|	-	0.15	11.4	0.0	0.22	10.8	0.0	1.2	1	0	0	1	1	1	0	Zeta	toxin
AAA_13	PF13166.6	gi|529078679|ref|YP_008377682.1|	-	0.18	10.4	0.1	0.25	9.9	0.1	1.1	1	0	0	1	1	1	0	AAA	domain
UbiA	PF01040.18	gi|529078681|ref|YP_008377684.1|	-	5.3e-55	186.5	26.5	5.3e-55	186.5	26.5	2.7	2	1	0	2	2	2	1	UbiA	prenyltransferase	family
COX15-CtaA	PF02628.15	gi|529078681|ref|YP_008377684.1|	-	0.00036	19.7	9.8	0.00036	19.7	9.8	4.2	3	1	0	4	4	4	2	Cytochrome	oxidase	assembly	protein
COX2	PF00116.20	gi|529078682|ref|YP_008377685.1|	-	2.9e-18	65.9	0.1	2.1e-17	63.1	0.0	2.2	2	1	1	3	3	3	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
COX2_TM	PF02790.15	gi|529078682|ref|YP_008377685.1|	-	6.3e-12	45.5	0.3	1e-11	44.8	0.3	1.4	1	0	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	transmembrane	domain
Cupredoxin_1	PF13473.6	gi|529078682|ref|YP_008377685.1|	-	0.0017	18.4	0.0	0.0033	17.5	0.0	1.5	1	0	0	1	1	1	1	Cupredoxin-like	domain
DUF3357	PF11837.8	gi|529078682|ref|YP_008377685.1|	-	0.094	13.2	0.2	0.62	10.5	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3357)
Vhr1	PF04001.13	gi|529078682|ref|YP_008377685.1|	-	0.16	12.3	0.0	0.28	11.5	0.0	1.3	1	0	0	1	1	1	0	Transcription	factor	Vhr1
7TM_GPCR_Sru	PF10322.9	gi|529078682|ref|YP_008377685.1|	-	0.19	11.0	0.0	0.25	10.6	0.0	1.1	1	0	0	1	1	1	0	Serpentine	type	7TM	GPCR	chemoreceptor	Sru
DUF3040	PF11239.8	gi|529078682|ref|YP_008377685.1|	-	4	7.8	5.4	16	5.9	0.1	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3040)
MaoC_dehydratas	PF01575.19	gi|529078683|ref|YP_008377686.1|	-	5.6e-17	61.4	0.0	6.7e-17	61.2	0.0	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|529078683|ref|YP_008377686.1|	-	5.2e-06	26.6	0.0	7.1e-06	26.2	0.0	1.3	1	0	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
ABC_tran	PF00005.27	gi|529078684|ref|YP_008377687.1|	-	8.4e-29	100.8	0.0	1.5e-28	100.1	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529078684|ref|YP_008377687.1|	-	5.6e-09	36.2	0.2	0.00026	20.9	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|529078684|ref|YP_008377687.1|	-	7.6e-05	22.2	0.0	0.00046	19.7	0.0	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|529078684|ref|YP_008377687.1|	-	0.0011	19.5	0.0	0.0015	19.1	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|529078684|ref|YP_008377687.1|	-	0.0034	16.7	0.0	0.0073	15.6	0.0	1.5	1	0	0	1	1	1	1	Zeta	toxin
AAA_30	PF13604.6	gi|529078684|ref|YP_008377687.1|	-	0.0058	16.4	5.4	0.015	15.0	0.9	2.8	2	1	0	2	2	2	1	AAA	domain
AAA_13	PF13166.6	gi|529078684|ref|YP_008377687.1|	-	0.0089	14.7	0.0	0.44	9.1	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_29	PF13555.6	gi|529078684|ref|YP_008377687.1|	-	0.01	15.5	0.1	0.022	14.5	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Mg_chelatase	PF01078.21	gi|529078684|ref|YP_008377687.1|	-	0.018	14.4	0.0	0.03	13.7	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_33	PF13671.6	gi|529078684|ref|YP_008377687.1|	-	0.023	14.8	0.9	0.23	11.6	0.2	2.8	3	1	0	3	3	3	0	AAA	domain
AAA_16	PF13191.6	gi|529078684|ref|YP_008377687.1|	-	0.057	13.8	2.8	0.069	13.5	1.3	2.0	2	1	0	2	2	2	0	AAA	ATPase	domain
AAA	PF00004.29	gi|529078684|ref|YP_008377687.1|	-	0.057	13.8	0.2	0.13	12.7	0.2	1.6	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_15	PF13175.6	gi|529078684|ref|YP_008377687.1|	-	0.067	12.9	0.0	0.17	11.6	0.0	1.5	2	0	0	2	2	2	0	AAA	ATPase	domain
NB-ARC	PF00931.22	gi|529078684|ref|YP_008377687.1|	-	0.077	12.2	0.1	0.12	11.5	0.1	1.2	1	0	0	1	1	1	0	NB-ARC	domain
AAA_27	PF13514.6	gi|529078684|ref|YP_008377687.1|	-	0.084	12.5	0.0	0.17	11.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
TsaE	PF02367.17	gi|529078684|ref|YP_008377687.1|	-	0.16	12.0	0.0	0.38	10.8	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_22	PF13401.6	gi|529078684|ref|YP_008377687.1|	-	0.18	12.1	0.4	0.73	10.1	0.1	2.0	2	0	0	2	2	2	0	AAA	domain
FecCD	PF01032.18	gi|529078685|ref|YP_008377688.1|	-	1.6e-89	300.0	32.6	3.6e-89	298.9	32.5	1.6	1	1	0	1	1	1	1	FecCD	transport	family
ABC-3	PF00950.17	gi|529078685|ref|YP_008377688.1|	-	0.00047	19.7	18.1	0.00047	19.7	18.1	1.9	2	0	0	2	2	2	1	ABC	3	transport	family
Peripla_BP_2	PF01497.18	gi|529078686|ref|YP_008377689.1|	-	8.7e-29	100.8	0.4	8.7e-29	100.8	0.4	1.6	2	0	0	2	2	2	1	Periplasmic	binding	protein
PGF-CTERM	PF18204.1	gi|529078686|ref|YP_008377689.1|	-	1.4e-06	28.1	1.2	1.4e-06	28.1	1.2	2.5	2	0	0	2	2	2	1	PGF-CTERM	motif
Nitro_FeMo-Co	PF02579.17	gi|529078686|ref|YP_008377689.1|	-	0.15	12.4	0.0	0.35	11.2	0.0	1.6	1	0	0	1	1	1	0	Dinitrogenase	iron-molybdenum	cofactor
Podoplanin	PF05808.11	gi|529078686|ref|YP_008377689.1|	-	1.1	9.3	16.4	0.34	11.0	12.1	2.3	2	0	0	2	2	2	0	Podoplanin
SRP19	PF01922.17	gi|529078687|ref|YP_008377690.1|	-	1.7e-23	83.3	0.0	2e-23	83.2	0.0	1.1	1	0	0	1	1	1	1	SRP19	protein
Gar1	PF04410.14	gi|529078688|ref|YP_008377691.1|	-	2.9e-07	30.4	0.0	2.9e-07	30.4	0.0	1.0	1	0	0	1	1	1	1	Gar1/Naf1	RNA	binding	region
SPP	PF06550.11	gi|529078689|ref|YP_008377692.1|	-	1.5e-86	290.4	21.6	3.8e-86	289.1	21.6	1.6	1	1	0	1	1	1	1	Signal-peptide	peptidase,	presenilin	aspartyl	protease
Presenilin	PF01080.17	gi|529078689|ref|YP_008377692.1|	-	0.0011	17.8	12.6	0.26	10.0	0.0	2.7	2	1	0	2	2	2	2	Presenilin
Peptidase_A22B	PF04258.13	gi|529078689|ref|YP_008377692.1|	-	0.0026	17.3	10.3	0.007	15.9	0.3	3.0	3	0	0	3	3	3	2	Signal	peptide	peptidase
DUF3054	PF11255.8	gi|529078690|ref|YP_008377693.1|	-	1.2e-21	77.3	12.8	1.5e-21	77.0	12.8	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3054)
CoA_binding_3	PF13727.6	gi|529078690|ref|YP_008377693.1|	-	0.002	18.2	7.4	0.002	18.2	7.4	1.6	1	1	0	1	1	1	1	CoA-binding	domain
DUF3397	PF11877.8	gi|529078690|ref|YP_008377693.1|	-	0.052	13.8	3.6	0.044	14.0	2.2	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3397)
DUF2070	PF09843.9	gi|529078690|ref|YP_008377693.1|	-	1.3	7.2	6.2	1.4	7.1	6.2	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
CPP1-like	PF11833.8	gi|529078690|ref|YP_008377693.1|	-	2.5	7.7	8.1	4.4	6.9	8.1	1.6	1	1	0	1	1	1	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
Acetyltransf_1	PF00583.25	gi|529078691|ref|YP_008377694.1|	-	5.7e-09	36.2	0.0	8.7e-09	35.6	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|529078691|ref|YP_008377694.1|	-	2.1e-05	24.8	0.0	3.3e-05	24.2	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|529078691|ref|YP_008377694.1|	-	0.00033	20.7	0.2	0.00097	19.2	0.0	1.8	2	0	0	2	2	2	1	GCN5-related	N-acetyl-transferase
Acetyltransf_10	PF13673.7	gi|529078691|ref|YP_008377694.1|	-	0.00048	20.1	0.0	0.00074	19.5	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
XPG_I	PF00867.18	gi|529078692|ref|YP_008377695.1|	-	2.3e-22	79.1	0.0	5e-22	78.1	0.0	1.6	1	0	0	1	1	1	1	XPG	I-region
XPG_N	PF00752.17	gi|529078692|ref|YP_008377695.1|	-	4.3e-14	52.8	0.0	7.5e-14	52.0	0.0	1.3	1	0	0	1	1	1	1	XPG	N-terminal	domain
5_3_exonuc	PF01367.20	gi|529078692|ref|YP_008377695.1|	-	0.00042	20.9	0.1	0.0011	19.6	0.0	1.7	2	0	0	2	2	2	1	5'-3'	exonuclease,	C-terminal	SAM	fold
5_3_exonuc_N	PF02739.16	gi|529078692|ref|YP_008377695.1|	-	0.043	13.7	0.0	0.067	13.1	0.0	1.3	1	0	0	1	1	1	0	5'-3'	exonuclease,	N-terminal	resolvase-like	domain
Ribosomal_S2	PF00318.20	gi|529078693|ref|YP_008377696.1|	-	6.2e-23	81.2	0.0	1.9e-13	50.1	0.4	2.1	2	0	0	2	2	2	2	Ribosomal	protein	S2
Enolase_C	PF00113.22	gi|529078694|ref|YP_008377697.1|	-	5.1e-76	255.7	0.2	6.9e-76	255.3	0.2	1.1	1	0	0	1	1	1	1	Enolase,	C-terminal	TIM	barrel	domain
Enolase_N	PF03952.16	gi|529078694|ref|YP_008377697.1|	-	1.1e-35	122.6	2.4	1.8e-35	122.0	0.5	2.3	2	1	0	2	2	2	1	Enolase,	N-terminal	domain
MR_MLE_C	PF13378.6	gi|529078694|ref|YP_008377697.1|	-	3.3e-09	36.6	0.0	6.6e-09	35.7	0.0	1.5	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MAAL_C	PF07476.11	gi|529078694|ref|YP_008377697.1|	-	0.0024	17.1	1.2	0.0026	17.0	0.1	1.6	2	0	0	2	2	2	1	Methylaspartate	ammonia-lyase	C-terminus
RNA_pol_Rpb6	PF01192.22	gi|529078695|ref|YP_008377698.1|	-	1e-10	41.3	0.1	1.1e-10	41.2	0.1	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb6
RNA_pol_N	PF01194.17	gi|529078696|ref|YP_008377699.1|	-	3e-16	59.4	0.0	3.3e-16	59.3	0.0	1.0	1	0	0	1	1	1	1	RNA	polymerases	N	/	8	kDa	subunit
Ribosomal_S9	PF00380.19	gi|529078697|ref|YP_008377700.1|	-	1.7e-24	86.7	0.0	1.8e-24	86.5	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S9/S16
Ribosomal_L13	PF00572.18	gi|529078698|ref|YP_008377701.1|	-	5.6e-09	36.3	0.1	1.2e-06	28.8	0.1	2.3	1	1	0	1	1	1	1	Ribosomal	protein	L13
Phage_GPL	PF05926.11	gi|529078698|ref|YP_008377701.1|	-	0.11	12.4	0.0	0.17	11.9	0.0	1.2	1	0	0	1	1	1	0	Phage	head	completion	protein	(GPL)
Ribosomal_L18	PF17135.4	gi|529078699|ref|YP_008377702.1|	-	6.5e-07	28.9	0.0	6.9e-07	28.8	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	60S	L18	and	50S	L18e
Ribosomal_L27A	PF00828.19	gi|529078699|ref|YP_008377702.1|	-	1.9e-05	25.3	0.1	6.2e-05	23.7	0.1	1.7	1	1	0	1	1	1	1	Ribosomal	proteins	50S-L15,	50S-L18e,	60S-L27A
RNA_pol_A_bac	PF01000.26	gi|529078700|ref|YP_008377703.1|	-	2.7e-19	69.6	0.0	9.4e-18	64.6	0.0	2.7	2	1	0	2	2	2	1	RNA	polymerase	Rpb3/RpoA	insert	domain
RNA_pol_L	PF01193.24	gi|529078700|ref|YP_008377703.1|	-	1.6e-13	49.9	0.0	2e-13	49.5	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
Ribosomal_S11	PF00411.19	gi|529078701|ref|YP_008377704.1|	-	1.6e-49	166.9	1.8	2e-49	166.6	1.8	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S11
Ribosomal_L18p	PF00861.22	gi|529078701|ref|YP_008377704.1|	-	0.0091	16.4	0.1	0.012	16.0	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	L18	of	archaea,	bacteria,	mitoch.	and	chloroplast
Pilus_CpaD	PF09476.10	gi|529078701|ref|YP_008377704.1|	-	0.014	15.1	0.5	0.017	14.9	0.5	1.2	1	0	0	1	1	1	0	Pilus	biogenesis	CpaD	protein	(pilus_cpaD)
S4	PF01479.25	gi|529078702|ref|YP_008377705.1|	-	7.1e-16	57.7	0.4	7.9e-15	54.3	0.0	2.2	2	0	0	2	2	2	1	S4	domain
Ribosomal_S4	PF00163.19	gi|529078702|ref|YP_008377705.1|	-	0.00034	21.4	0.4	0.00048	21.0	0.3	1.3	1	1	0	1	1	1	1	Ribosomal	protein	S4/S9	N-terminal	domain
Ribosomal_S13	PF00416.22	gi|529078703|ref|YP_008377706.1|	-	9.2e-45	152.2	4.8	1.1e-44	151.9	4.8	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S13/S18
FbpA	PF05833.11	gi|529078703|ref|YP_008377706.1|	-	0.0085	14.9	0.0	0.0085	14.9	0.0	1.2	1	0	0	1	1	1	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
adh_short	PF00106.25	gi|529078705|ref|YP_008377708.1|	-	1.7e-41	141.8	0.0	2.2e-41	141.5	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|529078705|ref|YP_008377708.1|	-	1.1e-34	120.0	0.1	1.5e-34	119.6	0.1	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|529078705|ref|YP_008377708.1|	-	8.7e-10	38.8	0.0	9.5e-07	28.9	0.0	2.2	2	0	0	2	2	2	2	KR	domain
Epimerase	PF01370.21	gi|529078705|ref|YP_008377708.1|	-	0.00036	20.1	0.1	0.00064	19.3	0.1	1.6	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.17	gi|529078705|ref|YP_008377708.1|	-	0.0031	16.6	0.0	0.0043	16.2	0.0	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
DNA_pol_lambd_f	PF10391.9	gi|529078705|ref|YP_008377708.1|	-	0.12	12.2	0.4	0.29	11.0	0.4	1.6	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
ADC	PF06314.11	gi|529078706|ref|YP_008377709.1|	-	2.2e-21	76.5	0.2	3.7e-21	75.8	0.2	1.3	1	1	0	1	1	1	1	Acetoacetate	decarboxylase	(ADC)
Alpha-amylase	PF00128.24	gi|529078707|ref|YP_008377710.1|	-	2e-22	80.2	0.0	4.4e-19	69.2	0.0	3.1	1	1	0	1	1	1	1	Alpha	amylase,	catalytic	domain
DUF1939	PF09154.10	gi|529078707|ref|YP_008377710.1|	-	1.9e-06	27.9	0.0	5.4e-06	26.5	0.0	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1939)
Glyco_hydro_114	PF03537.13	gi|529078707|ref|YP_008377710.1|	-	0.019	14.3	0.6	0.15	11.4	0.3	2.3	1	1	1	2	2	2	0	Glycoside-hydrolase	family	GH114
HemN_C	PF06969.16	gi|529078707|ref|YP_008377710.1|	-	0.18	11.9	0.0	0.84	9.7	0.0	2.1	2	0	0	2	2	2	0	HemN	C-terminal	domain
ParA	PF10609.9	gi|529078708|ref|YP_008377711.1|	-	3.3e-102	341.2	0.0	4e-102	340.9	0.0	1.1	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|529078708|ref|YP_008377711.1|	-	2.3e-15	56.8	0.0	2.2e-14	53.6	0.0	2.2	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
FeS_assembly_P	PF01883.19	gi|529078708|ref|YP_008377711.1|	-	7.9e-11	42.0	0.9	1.7e-10	40.9	0.4	1.9	2	0	0	2	2	2	1	Iron-sulfur	cluster	assembly	protein
AAA_31	PF13614.6	gi|529078708|ref|YP_008377711.1|	-	2.4e-10	40.6	0.1	6.8e-09	35.9	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
MipZ	PF09140.11	gi|529078708|ref|YP_008377711.1|	-	2.1e-08	33.8	0.0	3.7e-08	33.0	0.0	1.4	1	0	0	1	1	1	1	ATPase	MipZ
VirC1	PF07015.11	gi|529078708|ref|YP_008377711.1|	-	1.3e-05	24.6	0.0	2e-05	24.0	0.0	1.2	1	0	0	1	1	1	1	VirC1	protein
ArsA_ATPase	PF02374.15	gi|529078708|ref|YP_008377711.1|	-	2.1e-05	23.9	1.8	0.0011	18.3	0.3	2.1	2	0	0	2	2	2	1	Anion-transporting	ATPase
Fer4_NifH	PF00142.18	gi|529078708|ref|YP_008377711.1|	-	3.1e-05	23.6	0.0	0.0033	16.9	0.1	2.2	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_25	PF13481.6	gi|529078708|ref|YP_008377711.1|	-	0.0013	18.3	0.0	0.0026	17.4	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_26	PF13500.6	gi|529078708|ref|YP_008377711.1|	-	0.0029	17.4	0.0	2.8	7.7	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
MeaB	PF03308.16	gi|529078708|ref|YP_008377711.1|	-	0.024	13.6	0.5	0.039	12.9	0.5	1.2	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
DUF1610	PF07754.11	gi|529078708|ref|YP_008377711.1|	-	0.078	13.0	0.1	0.54	10.3	0.1	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
APS_kinase	PF01583.20	gi|529078708|ref|YP_008377711.1|	-	0.093	12.6	0.0	0.21	11.5	0.0	1.6	2	0	0	2	2	2	0	Adenylylsulphate	kinase
CLP1_P	PF16575.5	gi|529078708|ref|YP_008377711.1|	-	0.11	12.3	0.0	0.19	11.5	0.0	1.3	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
CBP_BcsQ	PF06564.12	gi|529078708|ref|YP_008377711.1|	-	0.18	11.2	0.4	2.7	7.4	0.2	2.0	2	0	0	2	2	2	0	Cellulose	biosynthesis	protein	BcsQ
HTH_DeoR	PF08220.12	gi|529078709|ref|YP_008377712.1|	-	0.011	15.5	0.4	0.017	14.9	0.4	1.3	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|529078709|ref|YP_008377712.1|	-	0.055	13.4	0.1	0.079	12.9	0.1	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
GntR	PF00392.21	gi|529078709|ref|YP_008377712.1|	-	0.084	12.5	0.2	0.12	12.0	0.2	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_12	PF08461.10	gi|529078709|ref|YP_008377712.1|	-	0.13	12.2	0.1	0.18	11.8	0.1	1.2	1	0	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
PIN	PF01850.21	gi|529078710|ref|YP_008377713.1|	-	1.6e-16	60.9	0.4	1.8e-16	60.7	0.4	1.0	1	0	0	1	1	1	1	PIN	domain
tRNA-synt_1b	PF00579.25	gi|529078711|ref|YP_008377714.1|	-	5.6e-57	193.3	0.0	7e-57	193.0	0.0	1.0	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
Arginase	PF00491.21	gi|529078711|ref|YP_008377714.1|	-	0.038	13.5	0.2	0.058	12.9	0.2	1.2	1	0	0	1	1	1	0	Arginase	family
Methyltransf_25	PF13649.6	gi|529078712|ref|YP_008377715.1|	-	4.6e-18	65.7	0.1	9.1e-18	64.8	0.1	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|529078712|ref|YP_008377715.1|	-	5.6e-18	65.4	0.1	9.4e-18	64.7	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|529078712|ref|YP_008377715.1|	-	5.7e-10	39.2	0.0	7.7e-10	38.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|529078712|ref|YP_008377715.1|	-	7e-10	39.5	0.1	1.6e-09	38.4	0.1	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|529078712|ref|YP_008377715.1|	-	1.1e-06	28.6	0.0	1.3e-06	28.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|529078712|ref|YP_008377715.1|	-	2e-05	24.0	0.0	2.8e-05	23.6	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_8	PF05148.15	gi|529078712|ref|YP_008377715.1|	-	0.0016	18.3	0.0	0.0022	17.9	0.0	1.2	1	0	0	1	1	1	1	Hypothetical	methyltransferase
Methyltransf_9	PF08003.11	gi|529078712|ref|YP_008377715.1|	-	0.0035	16.3	0.0	0.0043	16.0	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
NodS	PF05401.11	gi|529078712|ref|YP_008377715.1|	-	0.0096	15.6	0.0	0.012	15.2	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
Methyltransf_17	PF12692.7	gi|529078712|ref|YP_008377715.1|	-	0.01	15.9	0.2	0.17	11.9	0.0	2.1	1	1	1	2	2	2	1	S-adenosyl-L-methionine	methyltransferase
TPMT	PF05724.11	gi|529078712|ref|YP_008377715.1|	-	0.032	13.9	0.0	0.046	13.4	0.0	1.2	1	0	0	1	1	1	0	Thiopurine	S-methyltransferase	(TPMT)
Methyltransf_4	PF02390.17	gi|529078712|ref|YP_008377715.1|	-	0.033	13.7	0.0	0.067	12.7	0.0	1.6	2	0	0	2	2	2	0	Putative	methyltransferase
AdoMet_MTase	PF07757.13	gi|529078712|ref|YP_008377715.1|	-	0.051	13.9	0.1	0.85	10.0	0.0	2.2	1	1	1	2	2	2	0	Predicted	AdoMet-dependent	methyltransferase
MetW	PF07021.12	gi|529078712|ref|YP_008377715.1|	-	0.068	12.8	0.0	0.082	12.5	0.0	1.2	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
PCMT	PF01135.19	gi|529078712|ref|YP_008377715.1|	-	0.15	11.8	0.0	0.23	11.2	0.0	1.2	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
CMAS	PF02353.20	gi|529078712|ref|YP_008377715.1|	-	0.22	10.8	0.0	0.3	10.4	0.0	1.4	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Methyltransf_33	PF10017.9	gi|529078712|ref|YP_008377715.1|	-	0.23	10.6	0.0	0.45	9.6	0.0	1.5	1	1	1	2	2	2	0	Histidine-specific	methyltransferase,	SAM-dependent
PemK_toxin	PF02452.17	gi|529078713|ref|YP_008377716.1|	-	4.5e-07	30.3	0.0	5.1e-07	30.1	0.0	1.1	1	0	0	1	1	1	1	PemK-like,	MazF-like	toxin	of	type	II	toxin-antitoxin	system
MarR_2	PF12802.7	gi|529078714|ref|YP_008377717.1|	-	1.2e-06	28.3	0.0	2.2e-06	27.5	0.0	1.4	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|529078714|ref|YP_008377717.1|	-	7.9e-06	25.7	0.0	1.3e-05	25.0	0.0	1.5	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|529078714|ref|YP_008377717.1|	-	0.00019	21.4	0.1	0.00035	20.6	0.0	1.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|529078714|ref|YP_008377717.1|	-	0.00072	19.3	0.0	0.0011	18.7	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|529078714|ref|YP_008377717.1|	-	0.00074	19.7	0.0	0.0012	19.0	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Rrf2	PF02082.20	gi|529078714|ref|YP_008377717.1|	-	0.0013	19.0	0.0	0.0023	18.2	0.0	1.4	2	0	0	2	2	1	1	Transcriptional	regulator
DUF4423	PF14394.6	gi|529078714|ref|YP_008377717.1|	-	0.0045	16.7	0.0	0.0055	16.4	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HTH_Crp_2	PF13545.6	gi|529078714|ref|YP_008377717.1|	-	0.011	15.6	0.0	0.016	15.2	0.0	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|529078714|ref|YP_008377717.1|	-	0.036	13.6	0.0	0.06	12.9	0.0	1.5	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.6	gi|529078714|ref|YP_008377717.1|	-	0.045	13.6	0.0	0.074	12.9	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_11	PF08279.12	gi|529078714|ref|YP_008377717.1|	-	0.054	13.4	0.0	0.077	13.0	0.0	1.2	1	0	0	1	1	1	0	HTH	domain
DUF2250	PF10007.9	gi|529078714|ref|YP_008377717.1|	-	0.095	12.8	0.0	0.13	12.4	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Sigma70_r4_2	PF08281.12	gi|529078714|ref|YP_008377717.1|	-	0.14	11.9	0.0	0.22	11.2	0.0	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
SUI1	PF01253.22	gi|529078715|ref|YP_008377718.1|	-	9.8e-23	80.5	0.0	1.2e-22	80.2	0.0	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	SUI1
Img2	PF05046.14	gi|529078715|ref|YP_008377718.1|	-	0.0016	18.7	0.0	0.0023	18.2	0.0	1.5	1	1	0	1	1	1	1	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
DTW	PF03942.15	gi|529078715|ref|YP_008377718.1|	-	0.0074	16.0	0.5	0.0093	15.7	0.5	1.1	1	0	0	1	1	1	1	DTW	domain
Transglut_core	PF01841.19	gi|529078716|ref|YP_008377719.1|	-	6.5e-29	100.7	0.2	1.5e-28	99.5	0.2	1.6	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
Transglut_core3	PF13471.6	gi|529078716|ref|YP_008377719.1|	-	0.00058	19.8	1.3	0.0037	17.2	0.0	2.8	2	1	1	3	3	3	1	Transglutaminase-like	superfamily
DUF4129	PF13559.6	gi|529078716|ref|YP_008377719.1|	-	0.0035	17.6	7.8	0.0035	17.6	7.8	2.4	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4129)
DUF2849	PF11011.8	gi|529078716|ref|YP_008377719.1|	-	0.32	11.7	2.7	1.1	10.0	2.7	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2849)
DUF58	PF01882.18	gi|529078717|ref|YP_008377720.1|	-	5.3e-13	49.1	0.2	1.8e-12	47.4	0.3	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF58
TetR_C_22	PF17928.1	gi|529078717|ref|YP_008377720.1|	-	0.28	11.5	1.6	0.51	10.7	0.0	2.1	2	0	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
AAA_3	PF07726.11	gi|529078718|ref|YP_008377721.1|	-	8.4e-61	203.6	0.0	1.5e-60	202.8	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|529078718|ref|YP_008377721.1|	-	3.6e-19	68.4	1.5	7.6e-18	64.1	2.2	2.5	2	0	0	2	2	2	1	AAA	lid	domain
AAA_5	PF07728.14	gi|529078718|ref|YP_008377721.1|	-	2.1e-14	53.7	0.0	6.6e-14	52.1	0.0	1.8	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|529078718|ref|YP_008377721.1|	-	1.2e-06	29.0	0.0	1.8e-06	28.4	0.0	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|529078718|ref|YP_008377721.1|	-	3e-05	23.8	0.0	0.00059	19.6	0.0	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
Mg_chelatase	PF01078.21	gi|529078718|ref|YP_008377721.1|	-	0.0001	21.8	0.0	0.0092	15.4	0.0	2.2	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
RuvB_N	PF05496.12	gi|529078718|ref|YP_008377721.1|	-	0.00017	21.3	0.0	0.0021	17.8	0.0	2.1	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
MCM	PF00493.23	gi|529078718|ref|YP_008377721.1|	-	0.00054	19.1	0.0	0.0013	17.8	0.0	1.6	1	1	0	1	1	1	1	MCM	P-loop	domain
AAA_2	PF07724.14	gi|529078718|ref|YP_008377721.1|	-	0.0098	16.0	0.0	0.025	14.7	0.0	1.5	1	1	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
Aminotran_1_2	PF00155.21	gi|529078719|ref|YP_008377722.1|	-	2e-60	204.9	0.0	2.3e-60	204.7	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|529078719|ref|YP_008377722.1|	-	4.9e-16	59.0	0.2	7.5e-16	58.4	0.2	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.21	gi|529078719|ref|YP_008377722.1|	-	7.2e-09	35.3	0.0	1.5e-08	34.2	0.0	1.5	1	0	0	1	1	1	1	Beta-eliminating	lyase
Cys_Met_Meta_PP	PF01053.20	gi|529078719|ref|YP_008377722.1|	-	2.2e-06	26.4	0.0	3.2e-06	25.9	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_5	PF00266.19	gi|529078719|ref|YP_008377722.1|	-	5e-06	25.7	0.0	7.2e-06	25.2	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Aminotran_3	PF00202.21	gi|529078719|ref|YP_008377722.1|	-	0.027	13.1	0.3	0.052	12.2	0.0	1.5	2	0	0	2	2	2	0	Aminotransferase	class-III
MatE	PF01554.18	gi|529078720|ref|YP_008377723.1|	-	2.4e-58	196.3	29.9	4.5e-35	120.7	10.3	3.3	4	0	0	4	4	4	2	MatE
Citrate_synt	PF00285.21	gi|529078721|ref|YP_008377724.1|	-	2.6e-105	352.5	0.0	2.9e-105	352.3	0.0	1.0	1	0	0	1	1	1	1	Citrate	synthase,	C-terminal	domain
FhuF	PF06276.12	gi|529078721|ref|YP_008377724.1|	-	0.091	13.2	0.0	0.21	12.0	0.0	1.5	1	0	0	1	1	1	0	Ferric	iron	reductase	FhuF-like	transporter
Peripla_BP_2	PF01497.18	gi|529078722|ref|YP_008377725.1|	-	5.3e-21	75.3	0.0	6.4e-21	75.0	0.0	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
UvsW	PF11637.8	gi|529078722|ref|YP_008377725.1|	-	0.15	12.2	0.0	0.34	11.0	0.0	1.5	1	0	0	1	1	1	0	ATP-dependant	DNA	helicase	UvsW
Peripla_BP_2	PF01497.18	gi|529078723|ref|YP_008377726.1|	-	6.3e-12	45.6	0.0	1e-11	44.9	0.0	1.4	1	1	0	1	1	1	1	Periplasmic	binding	protein
Pyr_redox_2	PF07992.14	gi|529078724|ref|YP_008377727.1|	-	4.8e-07	29.3	0.0	7.1e-07	28.8	0.0	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|529078724|ref|YP_008377727.1|	-	2.6e-06	26.8	1.7	4.6e-06	26.0	0.4	1.9	2	1	0	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|529078724|ref|YP_008377727.1|	-	3.6e-06	27.1	0.2	8.8e-06	25.9	0.2	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.19	gi|529078724|ref|YP_008377727.1|	-	6.7e-06	25.6	0.2	1.8e-05	24.2	0.2	1.8	1	1	0	1	1	1	1	FAD	binding	domain
GIDA	PF01134.22	gi|529078724|ref|YP_008377727.1|	-	0.0001	21.6	0.2	0.00017	20.8	0.2	1.4	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Pyr_redox_3	PF13738.6	gi|529078724|ref|YP_008377727.1|	-	0.00023	20.5	0.0	0.0093	15.3	0.0	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|529078724|ref|YP_008377727.1|	-	0.00032	20.2	1.6	0.00046	19.7	0.6	1.7	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|529078724|ref|YP_008377727.1|	-	0.0049	16.1	0.2	0.0083	15.4	0.2	1.3	1	0	0	1	1	1	1	Thi4	family
HI0933_like	PF03486.14	gi|529078724|ref|YP_008377727.1|	-	0.01	14.5	0.1	0.017	13.8	0.1	1.3	1	0	0	1	1	1	0	HI0933-like	protein
DAO	PF01266.24	gi|529078724|ref|YP_008377727.1|	-	0.023	14.3	0.6	0.023	14.3	0.6	2.7	2	1	0	3	3	3	0	FAD	dependent	oxidoreductase
Lycopene_cycl	PF05834.12	gi|529078724|ref|YP_008377727.1|	-	0.05	12.7	0.2	0.097	11.7	0.2	1.4	1	0	0	1	1	1	0	Lycopene	cyclase	protein
FecCD	PF01032.18	gi|529078725|ref|YP_008377728.1|	-	2.4e-87	292.9	39.4	2.6e-87	292.7	38.8	1.3	1	1	0	1	1	1	1	FecCD	transport	family
ABC-3	PF00950.17	gi|529078725|ref|YP_008377728.1|	-	0.003	17.1	16.1	0.003	17.1	16.1	2.5	2	1	0	3	3	3	1	ABC	3	transport	family
RhodobacterPufX	PF11511.8	gi|529078725|ref|YP_008377728.1|	-	0.24	11.1	0.0	0.24	11.1	0.0	3.4	4	0	0	4	4	4	0	Intrinsic	membrane	protein	PufX
ABC_tran	PF00005.27	gi|529078726|ref|YP_008377729.1|	-	4.7e-31	108.1	0.0	6.3e-31	107.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529078726|ref|YP_008377729.1|	-	2.6e-11	43.9	3.3	1.1e-05	25.4	0.3	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|529078726|ref|YP_008377729.1|	-	1.4e-10	41.0	0.0	3.9e-05	23.2	0.0	2.1	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|529078726|ref|YP_008377729.1|	-	5.6e-06	26.0	0.1	1.3e-05	24.9	0.1	1.6	1	1	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.6	gi|529078726|ref|YP_008377729.1|	-	1e-05	25.2	0.2	3.9e-05	23.3	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|529078726|ref|YP_008377729.1|	-	0.00017	21.8	1.1	0.0016	18.8	1.1	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|529078726|ref|YP_008377729.1|	-	0.00026	21.2	0.0	0.00065	19.9	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|529078726|ref|YP_008377729.1|	-	0.00027	21.3	0.5	0.00049	20.5	0.5	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|529078726|ref|YP_008377729.1|	-	0.00054	20.5	0.0	0.00089	19.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|529078726|ref|YP_008377729.1|	-	0.0011	18.8	0.0	0.0018	18.1	0.0	1.3	1	0	0	1	1	1	1	AAA	ATPase	domain
ABC_ATPase	PF09818.9	gi|529078726|ref|YP_008377729.1|	-	0.0013	17.6	0.9	0.23	10.2	0.1	2.8	2	1	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
NACHT	PF05729.12	gi|529078726|ref|YP_008377729.1|	-	0.002	18.0	0.1	0.0044	17.0	0.0	1.6	2	0	0	2	2	2	1	NACHT	domain
AAA_30	PF13604.6	gi|529078726|ref|YP_008377729.1|	-	0.0023	17.7	0.1	0.0053	16.5	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|529078726|ref|YP_008377729.1|	-	0.0026	17.7	0.0	0.0053	16.7	0.0	1.5	1	0	0	1	1	1	1	RsgA	GTPase
AAA_28	PF13521.6	gi|529078726|ref|YP_008377729.1|	-	0.016	15.5	0.1	0.039	14.2	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|529078726|ref|YP_008377729.1|	-	0.027	14.9	0.0	0.089	13.2	0.0	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.6	gi|529078726|ref|YP_008377729.1|	-	0.029	14.9	0.0	0.067	13.7	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_14	PF13173.6	gi|529078726|ref|YP_008377729.1|	-	0.054	13.5	0.0	0.12	12.4	0.0	1.6	2	0	0	2	2	1	0	AAA	domain
Cytidylate_kin	PF02224.18	gi|529078726|ref|YP_008377729.1|	-	0.056	13.2	0.0	0.12	12.1	0.0	1.6	1	0	0	1	1	1	0	Cytidylate	kinase
HD	PF01966.22	gi|529078726|ref|YP_008377729.1|	-	0.057	13.6	0.6	0.85	9.9	0.2	2.2	2	0	0	2	2	2	0	HD	domain
AAA_24	PF13479.6	gi|529078726|ref|YP_008377729.1|	-	0.085	12.6	0.0	0.16	11.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
TsaE	PF02367.17	gi|529078726|ref|YP_008377729.1|	-	0.1	12.6	0.0	0.2	11.7	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
APS_kinase	PF01583.20	gi|529078726|ref|YP_008377729.1|	-	0.11	12.4	0.1	0.17	11.8	0.1	1.3	1	0	0	1	1	1	0	Adenylylsulphate	kinase
SRP54	PF00448.22	gi|529078726|ref|YP_008377729.1|	-	0.11	12.1	0.1	0.2	11.3	0.1	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
RNA_helicase	PF00910.22	gi|529078726|ref|YP_008377729.1|	-	0.11	12.8	0.0	0.19	12.1	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
AAA_5	PF07728.14	gi|529078726|ref|YP_008377729.1|	-	0.12	12.3	0.2	0.37	10.8	0.1	2.0	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
MMR_HSR1	PF01926.23	gi|529078726|ref|YP_008377729.1|	-	0.14	12.3	0.1	1.1	9.4	0.0	2.1	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
Zeta_toxin	PF06414.12	gi|529078726|ref|YP_008377729.1|	-	0.16	11.2	0.0	0.29	10.4	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
DUF2813	PF11398.8	gi|529078726|ref|YP_008377729.1|	-	0.21	10.8	0.0	0.34	10.1	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2813)
Lactamase_B_2	PF12706.7	gi|529078727|ref|YP_008377730.1|	-	3.8e-14	52.7	0.9	5.4e-14	52.2	0.9	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|529078727|ref|YP_008377730.1|	-	3.5e-09	36.7	0.1	5.5e-09	36.1	0.1	1.4	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
DUF3038	PF11237.8	gi|529078727|ref|YP_008377730.1|	-	0.15	12.1	0.0	0.22	11.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3038)
FlaC_arch	PF05377.11	gi|529078728|ref|YP_008377731.1|	-	7.2e-07	29.5	8.3	0.022	15.1	0.2	4.1	4	0	0	4	4	4	2	Flagella	accessory	protein	C	(FlaC)
DUF1664	PF07889.12	gi|529078728|ref|YP_008377731.1|	-	5.1e-06	26.5	1.5	0.00021	21.3	0.1	2.9	1	1	2	3	3	2	1	Protein	of	unknown	function	(DUF1664)
NPV_P10	PF05531.12	gi|529078728|ref|YP_008377731.1|	-	1.6e-05	25.3	0.8	0.12	12.8	0.2	3.7	1	1	2	3	3	3	1	Nucleopolyhedrovirus	P10	protein
ZapB	PF06005.12	gi|529078728|ref|YP_008377731.1|	-	2.3e-05	24.7	0.5	0.046	14.2	0.1	2.6	2	0	0	2	2	2	1	Cell	division	protein	ZapB
BLOC1_2	PF10046.9	gi|529078728|ref|YP_008377731.1|	-	3e-05	24.2	5.5	0.15	12.4	0.5	3.3	2	1	1	3	3	3	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
CENP-F_leu_zip	PF10473.9	gi|529078728|ref|YP_008377731.1|	-	4.8e-05	23.4	18.9	0.00018	21.5	3.6	2.6	1	1	2	3	3	3	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF5082	PF16888.5	gi|529078728|ref|YP_008377731.1|	-	5.5e-05	23.4	1.0	0.0071	16.6	0.1	2.4	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF5082)
HrpB7	PF09486.10	gi|529078728|ref|YP_008377731.1|	-	6e-05	23.5	0.4	0.0015	18.9	0.2	2.3	1	1	1	2	2	2	1	Bacterial	type	III	secretion	protein	(HrpB7)
EzrA	PF06160.12	gi|529078728|ref|YP_008377731.1|	-	6.6e-05	21.3	0.3	0.00011	20.5	0.3	1.3	1	0	0	1	1	1	1	Septation	ring	formation	regulator,	EzrA
Baculo_PEP_C	PF04513.12	gi|529078728|ref|YP_008377731.1|	-	0.00013	22.1	0.1	0.2	11.7	0.0	2.4	1	1	1	2	2	2	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Spc7	PF08317.11	gi|529078728|ref|YP_008377731.1|	-	0.00013	21.0	3.2	0.00058	18.8	3.3	1.9	1	1	0	1	1	1	1	Spc7	kinetochore	protein
bZIP_1	PF00170.21	gi|529078728|ref|YP_008377731.1|	-	0.00014	21.8	1.6	0.22	11.7	0.0	3.8	3	1	1	4	4	4	1	bZIP	transcription	factor
Filament	PF00038.21	gi|529078728|ref|YP_008377731.1|	-	0.0002	21.1	2.5	0.12	11.9	0.5	2.1	1	1	1	2	2	2	2	Intermediate	filament	protein
CLZ	PF16526.5	gi|529078728|ref|YP_008377731.1|	-	0.00039	20.7	2.7	0.1	13.0	0.3	3.7	1	1	3	4	4	3	1	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
DUF948	PF06103.11	gi|529078728|ref|YP_008377731.1|	-	0.0005	20.3	0.2	0.13	12.6	0.1	2.7	1	1	1	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF948)
ATG16	PF08614.11	gi|529078728|ref|YP_008377731.1|	-	0.00075	19.8	4.3	0.0032	17.7	0.1	2.7	1	1	2	3	3	3	1	Autophagy	protein	16	(ATG16)
TMF_TATA_bd	PF12325.8	gi|529078728|ref|YP_008377731.1|	-	0.00095	19.4	6.0	0.01	16.0	1.9	2.5	1	1	1	2	2	2	2	TATA	element	modulatory	factor	1	TATA	binding
Laminin_II	PF06009.12	gi|529078728|ref|YP_008377731.1|	-	0.0012	18.9	0.2	0.0035	17.4	0.2	1.8	1	1	0	1	1	1	1	Laminin	Domain	II
DUF812	PF05667.11	gi|529078728|ref|YP_008377731.1|	-	0.0015	17.5	2.2	0.0026	16.8	0.5	1.8	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF812)
Rab5-bind	PF09311.11	gi|529078728|ref|YP_008377731.1|	-	0.0018	17.7	3.2	0.0029	17.0	0.3	2.1	1	1	1	2	2	2	1	Rabaptin-like	protein
Spectrin	PF00435.21	gi|529078728|ref|YP_008377731.1|	-	0.002	18.6	2.0	0.0059	17.1	0.3	2.2	1	1	1	2	2	2	1	Spectrin	repeat
COG2	PF06148.11	gi|529078728|ref|YP_008377731.1|	-	0.0024	18.0	5.3	0.13	12.4	0.7	2.9	1	1	1	2	2	2	1	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
UPF0242	PF06785.11	gi|529078728|ref|YP_008377731.1|	-	0.0033	17.6	3.2	0.13	12.4	0.8	2.3	1	1	1	2	2	2	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF4349	PF14257.6	gi|529078728|ref|YP_008377731.1|	-	0.0033	16.9	9.6	0.017	14.6	2.1	2.7	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4349)
Lebercilin	PF15619.6	gi|529078728|ref|YP_008377731.1|	-	0.0042	16.8	0.1	0.0064	16.2	0.1	1.2	1	0	0	1	1	1	1	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
DUF3450	PF11932.8	gi|529078728|ref|YP_008377731.1|	-	0.0043	16.4	0.8	0.052	12.8	0.9	2.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3450)
FPP	PF05911.11	gi|529078728|ref|YP_008377731.1|	-	0.0044	15.3	1.4	0.0055	15.0	1.4	1.1	1	0	0	1	1	1	1	Filament-like	plant	protein,	long	coiled-coil
DASH_Duo1	PF08651.10	gi|529078728|ref|YP_008377731.1|	-	0.0045	16.7	0.1	1.1	9.0	0.0	2.8	2	1	1	3	3	2	1	DASH	complex	subunit	Duo1
AAA_13	PF13166.6	gi|529078728|ref|YP_008377731.1|	-	0.0046	15.7	0.0	0.0059	15.3	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
Dynamitin	PF04912.14	gi|529078728|ref|YP_008377731.1|	-	0.0069	15.8	5.3	0.79	9.0	2.6	2.4	1	1	1	2	2	2	1	Dynamitin
DUF16	PF01519.16	gi|529078728|ref|YP_008377731.1|	-	0.0093	16.4	1.0	0.025	15.0	0.6	2.0	1	1	1	2	2	1	1	Protein	of	unknown	function	DUF16
Gp58	PF07902.11	gi|529078728|ref|YP_008377731.1|	-	0.0099	14.2	0.4	0.013	13.8	0.4	1.1	1	0	0	1	1	1	1	gp58-like	protein
DUF4795	PF16043.5	gi|529078728|ref|YP_008377731.1|	-	0.014	15.0	4.2	0.027	14.1	4.0	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4795)
TBCC_N	PF16752.5	gi|529078728|ref|YP_008377731.1|	-	0.015	15.7	1.2	0.57	10.6	0.2	2.7	1	1	1	2	2	2	0	Tubulin-specific	chaperone	C	N-terminal	domain
Golgin_A5	PF09787.9	gi|529078728|ref|YP_008377731.1|	-	0.018	14.5	3.8	0.032	13.7	3.7	1.4	1	1	0	1	1	1	0	Golgin	subfamily	A	member	5
APG6_N	PF17675.1	gi|529078728|ref|YP_008377731.1|	-	0.018	15.5	2.8	0.018	15.5	2.8	2.4	1	1	2	3	3	3	0	Apg6	coiled-coil	region
MscS_porin	PF12795.7	gi|529078728|ref|YP_008377731.1|	-	0.019	14.5	0.0	0.067	12.7	0.0	1.8	1	1	0	1	1	1	0	Mechanosensitive	ion	channel	porin	domain
SlyX	PF04102.12	gi|529078728|ref|YP_008377731.1|	-	0.02	15.5	6.8	0.23	12.1	0.1	3.8	1	1	2	3	3	3	0	SlyX
DASH_Dam1	PF08653.10	gi|529078728|ref|YP_008377731.1|	-	0.022	14.5	3.8	5.2	7.0	0.0	3.9	4	0	0	4	4	4	0	DASH	complex	subunit	Dam1
DivIC	PF04977.15	gi|529078728|ref|YP_008377731.1|	-	0.027	14.3	0.3	19	5.1	0.0	3.3	2	1	1	3	3	3	0	Septum	formation	initiator
DUF4407	PF14362.6	gi|529078728|ref|YP_008377731.1|	-	0.027	13.8	0.9	0.087	12.2	0.2	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4407)
DUF3584	PF12128.8	gi|529078728|ref|YP_008377731.1|	-	0.028	12.0	3.4	0.039	11.5	3.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
MCPsignal	PF00015.21	gi|529078728|ref|YP_008377731.1|	-	0.029	14.2	0.2	0.069	13.0	0.2	1.7	1	0	0	1	1	1	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Snapin_Pallidin	PF14712.6	gi|529078728|ref|YP_008377731.1|	-	0.029	14.8	0.2	3	8.3	0.0	2.6	1	1	2	3	3	3	0	Snapin/Pallidin
XhlA	PF10779.9	gi|529078728|ref|YP_008377731.1|	-	0.03	14.5	0.6	4.1	7.7	0.1	3.4	3	1	1	4	4	3	0	Haemolysin	XhlA
HMMR_N	PF15905.5	gi|529078728|ref|YP_008377731.1|	-	0.033	13.6	3.2	0.071	12.6	3.2	1.5	1	1	0	1	1	1	0	Hyaluronan	mediated	motility	receptor	N-terminal
IFT57	PF10498.9	gi|529078728|ref|YP_008377731.1|	-	0.038	13.0	1.1	0.095	11.7	1.1	1.7	1	1	0	1	1	1	0	Intra-flagellar	transport	protein	57
Swi5	PF07061.11	gi|529078728|ref|YP_008377731.1|	-	0.039	14.0	0.5	4.1	7.6	0.0	3.1	2	1	1	3	3	3	0	Swi5
WEMBL	PF05701.11	gi|529078728|ref|YP_008377731.1|	-	0.04	12.6	2.3	0.071	11.8	2.3	1.4	1	1	0	1	1	1	0	Weak	chloroplast	movement	under	blue	light
ABC_tran_CTD	PF16326.5	gi|529078728|ref|YP_008377731.1|	-	0.042	14.1	10.6	2.1	8.7	0.9	3.1	1	1	1	2	2	2	0	ABC	transporter	C-terminal	domain
Prefoldin	PF02996.17	gi|529078728|ref|YP_008377731.1|	-	0.042	13.8	2.3	14	5.6	0.3	3.9	1	1	1	2	2	2	0	Prefoldin	subunit
KASH_CCD	PF14662.6	gi|529078728|ref|YP_008377731.1|	-	0.043	13.6	5.1	0.13	12.0	5.1	1.7	1	1	0	1	1	1	0	Coiled-coil	region	of	CCDC155	or	KASH
DUF4164	PF13747.6	gi|529078728|ref|YP_008377731.1|	-	0.045	14.0	7.4	0.48	10.7	2.7	2.6	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4164)
Fez1	PF06818.15	gi|529078728|ref|YP_008377731.1|	-	0.049	14.1	1.9	0.13	12.7	1.9	1.7	1	1	0	1	1	1	0	Fez1
Seryl_tRNA_N	PF02403.22	gi|529078728|ref|YP_008377731.1|	-	0.055	13.7	1.0	5.1	7.4	0.1	2.9	1	1	1	3	3	3	0	Seryl-tRNA	synthetase	N-terminal	domain
Prefoldin_2	PF01920.20	gi|529078728|ref|YP_008377731.1|	-	0.056	13.4	3.4	5.8	6.9	0.0	3.7	1	1	3	4	4	4	0	Prefoldin	subunit
Phage_GP20	PF06810.11	gi|529078728|ref|YP_008377731.1|	-	0.064	13.1	2.1	0.32	10.8	0.7	2.6	1	1	1	2	2	2	0	Phage	minor	structural	protein	GP20
THOC7	PF05615.13	gi|529078728|ref|YP_008377731.1|	-	0.064	13.5	0.6	0.45	10.8	0.1	2.5	1	1	1	2	2	2	0	Tho	complex	subunit	7
Cast	PF10174.9	gi|529078728|ref|YP_008377731.1|	-	0.065	11.5	2.4	0.091	11.0	2.4	1.1	1	0	0	1	1	1	0	RIM-binding	protein	of	the	cytomatrix	active	zone
TPR_MLP1_2	PF07926.12	gi|529078728|ref|YP_008377731.1|	-	0.073	13.1	4.3	0.46	10.6	1.9	2.4	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
PspA_IM30	PF04012.12	gi|529078728|ref|YP_008377731.1|	-	0.077	12.6	0.3	1.9	8.0	0.3	2.3	1	1	0	1	1	1	0	PspA/IM30	family
Mod_r	PF07200.13	gi|529078728|ref|YP_008377731.1|	-	0.078	13.1	1.6	3.9	7.6	0.2	2.2	1	1	1	2	2	2	0	Modifier	of	rudimentary	(Mod(r))	protein
DUF885	PF05960.11	gi|529078728|ref|YP_008377731.1|	-	0.091	12.4	0.1	0.15	11.7	0.1	1.3	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF885)
Collagen_mid	PF15984.5	gi|529078728|ref|YP_008377731.1|	-	0.096	12.4	0.0	0.19	11.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	collagen,	middle	region
Sec34	PF04136.15	gi|529078728|ref|YP_008377731.1|	-	0.1	12.5	0.7	1.7	8.5	0.1	2.3	1	1	2	3	3	3	0	Sec34-like	family
WXG100	PF06013.12	gi|529078728|ref|YP_008377731.1|	-	0.1	12.8	0.9	6.2	7.1	0.2	3.3	1	1	2	3	3	2	0	Proteins	of	100	residues	with	WXG
YtxH	PF12732.7	gi|529078728|ref|YP_008377731.1|	-	0.1	13.1	1.4	5.3	7.6	0.2	2.7	2	0	0	2	2	2	0	YtxH-like	protein
Fib_alpha	PF08702.10	gi|529078728|ref|YP_008377731.1|	-	0.12	12.6	0.1	1.2	9.3	0.0	2.1	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
HIP1_clath_bdg	PF16515.5	gi|529078728|ref|YP_008377731.1|	-	0.12	13.0	6.1	0.34	11.5	0.3	2.6	1	1	1	2	2	2	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
RmuC	PF02646.16	gi|529078728|ref|YP_008377731.1|	-	0.16	11.1	1.6	7.4	5.6	0.2	2.4	1	1	1	2	2	2	0	RmuC	family
EMP24_GP25L	PF01105.24	gi|529078728|ref|YP_008377731.1|	-	0.16	11.9	0.5	1.4	8.8	0.3	2.5	1	1	0	1	1	1	0	emp24/gp25L/p24	family/GOLD
DUF2730	PF10805.8	gi|529078728|ref|YP_008377731.1|	-	0.17	12.0	1.6	1.4	9.1	0.3	2.9	1	1	1	3	3	2	0	Protein	of	unknown	function	(DUF2730)
TACC_C	PF05010.14	gi|529078728|ref|YP_008377731.1|	-	0.2	11.5	0.7	0.42	10.4	0.7	1.6	1	1	0	1	1	1	0	Transforming	acidic	coiled-coil-containing	protein	(TACC),	C-terminal
MerR-DNA-bind	PF09278.11	gi|529078728|ref|YP_008377731.1|	-	0.22	12.1	3.7	5.5	7.6	0.7	3.4	3	1	0	3	3	2	0	MerR,	DNA	binding
ADIP	PF11559.8	gi|529078728|ref|YP_008377731.1|	-	0.22	11.6	0.1	2	8.5	0.0	2.0	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
Fmp27_WPPW	PF10359.9	gi|529078728|ref|YP_008377731.1|	-	0.22	10.3	0.6	3.3	6.5	0.1	2.0	1	1	1	2	2	2	0	RNA	pol	II	promoter	Fmp27	protein	domain
Tropomyosin_1	PF12718.7	gi|529078728|ref|YP_008377731.1|	-	0.24	11.6	7.8	0.47	10.6	4.2	2.3	1	1	1	2	2	2	0	Tropomyosin	like
DUF4618	PF15397.6	gi|529078728|ref|YP_008377731.1|	-	0.24	10.8	2.0	11	5.3	0.0	3.0	2	1	0	2	2	1	0	Domain	of	unknown	function	(DUF4618)
GAS	PF13851.6	gi|529078728|ref|YP_008377731.1|	-	0.24	10.7	0.3	2	7.7	0.1	1.9	1	1	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
zf-C4H2	PF10146.9	gi|529078728|ref|YP_008377731.1|	-	0.28	11.5	1.5	0.46	10.8	1.5	1.4	1	0	0	1	1	1	0	Zinc	finger-containing	protein
Cep57_CLD_2	PF14197.6	gi|529078728|ref|YP_008377731.1|	-	0.31	11.2	6.4	0.13	12.4	1.7	2.7	2	1	0	2	2	2	0	Centrosome	localisation	domain	of	PPC89
TMPIT	PF07851.13	gi|529078728|ref|YP_008377731.1|	-	0.31	10.2	0.1	0.66	9.2	0.1	1.4	1	1	0	1	1	1	0	TMPIT-like	protein
Wtap	PF17098.5	gi|529078728|ref|YP_008377731.1|	-	0.36	10.7	7.0	3.2	7.7	0.3	3.0	2	1	1	3	3	3	0	WTAP/Mum2p	family
Nsp1_C	PF05064.13	gi|529078728|ref|YP_008377731.1|	-	0.37	10.6	5.9	0.3	10.9	1.5	2.9	2	1	1	3	3	2	0	Nsp1-like	C-terminal	region
CorA	PF01544.18	gi|529078728|ref|YP_008377731.1|	-	0.38	10.0	1.8	1	8.6	1.0	2.1	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
Osmo_CC	PF08946.10	gi|529078728|ref|YP_008377731.1|	-	0.46	10.8	11.6	1.1	9.6	0.4	3.5	4	0	0	4	4	2	0	Osmosensory	transporter	coiled	coil
YkyA	PF10368.9	gi|529078728|ref|YP_008377731.1|	-	0.53	9.9	2.3	1.1	8.9	0.5	2.0	1	1	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
FAM184	PF15665.5	gi|529078728|ref|YP_008377731.1|	-	0.59	9.9	2.6	1.9	8.2	0.8	1.8	1	1	1	2	2	2	0	Family	with	sequence	similarity	184,	A	and	B
Rx_N	PF18052.1	gi|529078728|ref|YP_008377731.1|	-	0.94	9.8	8.0	21	5.5	2.6	3.5	1	1	3	4	4	3	0	Rx	N-terminal	domain
MIP-T3_C	PF17749.1	gi|529078728|ref|YP_008377731.1|	-	0.98	9.4	3.9	3.6	7.5	2.2	2.4	1	1	1	2	2	2	0	Microtubule-binding	protein	MIP-T3	C-terminal	region
TMF_DNA_bd	PF12329.8	gi|529078728|ref|YP_008377731.1|	-	1.1	9.3	7.9	2.6	8.1	0.3	3.4	1	1	2	3	3	3	0	TATA	element	modulatory	factor	1	DNA	binding
TolA_bind_tri	PF16331.5	gi|529078728|ref|YP_008377731.1|	-	1.2	9.3	8.0	13	6.0	0.1	3.8	1	1	2	3	3	3	0	TolA	binding	protein	trimerisation
DUF4140	PF13600.6	gi|529078728|ref|YP_008377731.1|	-	1.3	9.5	6.4	3.2	8.3	0.3	3.6	1	1	2	3	3	3	0	N-terminal	domain	of	unknown	function	(DUF4140)
Syntaxin-6_N	PF09177.11	gi|529078728|ref|YP_008377731.1|	-	1.4	9.5	4.1	3.4	8.3	2.8	2.3	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
Rep_4	PF05797.11	gi|529078728|ref|YP_008377731.1|	-	1.4	8.0	5.7	4.4	6.3	1.1	2.1	1	1	1	2	2	2	0	Yeast	trans-acting	factor	(REP1/REP2)
LPP	PF04728.13	gi|529078728|ref|YP_008377731.1|	-	1.5	9.3	3.9	12	6.4	0.1	3.8	2	1	2	4	4	4	0	Lipoprotein	leucine-zipper
DHR10	PF18595.1	gi|529078728|ref|YP_008377731.1|	-	1.8	8.7	5.7	4.3	7.4	1.9	2.4	1	1	1	2	2	2	0	Designed	helical	repeat	protein	10	domain
Vps53_N	PF04100.12	gi|529078728|ref|YP_008377731.1|	-	1.9	7.4	3.3	2.4	7.0	1.4	1.9	1	1	1	2	2	2	0	Vps53-like,	N-terminal
Spc24	PF08286.11	gi|529078728|ref|YP_008377731.1|	-	2.8	8.2	7.1	18	5.6	1.4	3.8	1	1	2	3	3	3	0	Spc24	subunit	of	Ndc80
DUF848	PF05852.11	gi|529078728|ref|YP_008377731.1|	-	7	6.8	9.3	14	5.8	5.8	2.5	1	1	1	2	2	2	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
GST_N_2	PF13409.6	gi|529078729|ref|YP_008377732.1|	-	4.1e-24	84.7	0.3	8.3e-23	80.5	0.0	2.2	2	0	0	2	2	2	1	Glutathione	S-transferase,	N-terminal	domain
GST_C_2	PF13410.6	gi|529078729|ref|YP_008377732.1|	-	2.6e-12	46.6	0.7	5.1e-12	45.6	0.7	1.5	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
GST_C	PF00043.25	gi|529078729|ref|YP_008377732.1|	-	3e-07	30.6	0.0	5.6e-07	29.7	0.0	1.5	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
GST_N_3	PF13417.6	gi|529078729|ref|YP_008377732.1|	-	1.6e-06	28.4	0.1	4.4e-05	23.8	0.1	2.5	1	1	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_C_3	PF14497.6	gi|529078729|ref|YP_008377732.1|	-	1.1e-05	25.6	0.0	2.4e-05	24.4	0.0	1.5	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
GST_C_6	PF17171.4	gi|529078729|ref|YP_008377732.1|	-	3.2e-05	23.6	0.1	5.6e-05	22.8	0.1	1.4	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
SANT_DAMP1_like	PF16282.5	gi|529078729|ref|YP_008377732.1|	-	0.026	14.7	0.5	0.074	13.3	0.2	2.0	2	0	0	2	2	2	0	SANT/Myb-like	domain	of	DAMP1
Ribosomal_L16	PF00252.18	gi|529078730|ref|YP_008377733.1|	-	4.4e-29	101.1	0.0	5.1e-29	100.9	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L16p/L10e
RimK	PF08443.11	gi|529078731|ref|YP_008377734.1|	-	3.1e-24	85.6	0.0	4.2e-24	85.2	0.0	1.1	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
GSH-S_ATP	PF02955.16	gi|529078731|ref|YP_008377734.1|	-	1.9e-12	46.9	0.0	2.8e-12	46.4	0.0	1.2	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|529078731|ref|YP_008377734.1|	-	5.3e-09	36.3	0.0	7.8e-09	35.8	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|529078731|ref|YP_008377734.1|	-	7.1e-08	32.0	0.0	0.00026	20.3	0.0	2.3	1	1	1	2	2	2	2	Sugar-transfer	associated	ATP-grasp
TTL	PF03133.15	gi|529078731|ref|YP_008377734.1|	-	0.0016	17.7	0.0	0.0022	17.2	0.0	1.2	1	0	0	1	1	1	1	Tubulin-tyrosine	ligase	family
R2K_3	PF14243.6	gi|529078731|ref|YP_008377734.1|	-	0.0025	17.8	0.2	0.0038	17.3	0.2	1.3	1	0	0	1	1	1	1	ATP-grasp	domain,	R2K	clade	family	3
R2K_2	PF18299.1	gi|529078731|ref|YP_008377734.1|	-	0.003	17.4	0.0	0.0048	16.8	0.0	1.5	1	0	0	1	1	1	1	ATP-grasp	domain,	R2K	clade	family	2
Fe_bilin_red	PF05996.12	gi|529078731|ref|YP_008377734.1|	-	0.076	12.7	0.0	0.12	12.0	0.0	1.2	1	0	0	1	1	1	0	Ferredoxin-dependent	bilin	reductase
ATPgrasp_YheCD	PF14398.6	gi|529078731|ref|YP_008377734.1|	-	0.13	11.5	0.0	5.9	6.1	0.0	2.3	2	1	0	2	2	2	0	YheC/D	like	ATP-grasp
Zn_Tnp_IS1595	PF12760.7	gi|529078732|ref|YP_008377735.1|	-	9.1e-05	22.3	1.5	0.00012	22.0	1.5	1.2	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Lar_restr_allev	PF14354.6	gi|529078732|ref|YP_008377735.1|	-	0.00014	22.2	0.7	0.00014	22.1	0.7	1.1	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
FdhE	PF04216.12	gi|529078732|ref|YP_008377735.1|	-	0.00054	19.9	1.3	0.00054	19.9	1.3	1.0	1	0	0	1	1	1	1	Protein	involved	in	formate	dehydrogenase	formation
Ogr_Delta	PF04606.12	gi|529078732|ref|YP_008377735.1|	-	0.00063	19.7	0.8	0.00076	19.4	0.8	1.1	1	0	0	1	1	1	1	Ogr/Delta-like	zinc	finger
TFIIS_C	PF01096.18	gi|529078732|ref|YP_008377735.1|	-	0.0025	17.7	6.7	0.11	12.3	1.2	2.1	2	0	0	2	2	2	2	Transcription	factor	S-II	(TFIIS)
RNA_POL_M_15KD	PF02150.16	gi|529078732|ref|YP_008377735.1|	-	0.0062	16.4	1.5	0.1	12.5	0.2	2.1	2	0	0	2	2	2	1	RNA	polymerases	M/15	Kd	subunit
Nudix_N_2	PF14803.6	gi|529078732|ref|YP_008377735.1|	-	0.0083	16.0	2.5	0.027	14.4	2.5	1.8	1	1	0	1	1	1	1	Nudix	N-terminal
Cys_rich_CPXG	PF14255.6	gi|529078732|ref|YP_008377735.1|	-	0.0091	15.9	1.9	0.014	15.2	1.9	1.4	1	1	0	1	1	1	1	Cysteine-rich	CPXCG
Zn_ribbon_SprT	PF17283.2	gi|529078732|ref|YP_008377735.1|	-	0.012	15.5	3.2	0.036	14.0	3.2	1.7	1	1	0	1	1	1	0	SprT-like	zinc	ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|529078732|ref|YP_008377735.1|	-	0.015	15.2	1.9	1.5	8.8	0.1	2.1	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
OrfB_Zn_ribbon	PF07282.11	gi|529078732|ref|YP_008377735.1|	-	0.019	14.9	1.9	0.032	14.1	1.9	1.3	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-ribbon_3	PF13248.6	gi|529078732|ref|YP_008377735.1|	-	0.024	14.1	4.5	0.079	12.4	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|529078732|ref|YP_008377735.1|	-	0.033	14.3	5.5	0.35	11.0	0.1	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|529078732|ref|YP_008377735.1|	-	0.082	12.6	2.9	2.3	8.0	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|529078732|ref|YP_008377735.1|	-	0.11	12.1	4.4	1.2	8.7	4.4	2.2	1	1	0	1	1	1	0	TFIIB	zinc-binding
Rubredoxin_2	PF18073.1	gi|529078732|ref|YP_008377735.1|	-	0.15	11.8	8.1	2.2	8.1	0.6	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zf-H2C2_2	PF13465.6	gi|529078732|ref|YP_008377735.1|	-	0.15	12.6	1.1	18	6.0	0.1	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-LITAF-like	PF10601.9	gi|529078732|ref|YP_008377735.1|	-	0.16	12.3	2.8	1.4	9.2	3.4	1.9	1	1	1	2	2	2	0	LITAF-like	zinc	ribbon	domain
Cys_rich_KTR	PF14205.6	gi|529078732|ref|YP_008377735.1|	-	0.16	11.8	0.1	0.16	11.8	0.1	1.4	2	0	0	2	2	2	0	Cysteine-rich	KTR
DUF2387	PF09526.10	gi|529078732|ref|YP_008377735.1|	-	0.17	12.1	1.5	0.29	11.3	1.5	1.4	1	1	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
Terminase_GpA	PF05876.12	gi|529078732|ref|YP_008377735.1|	-	0.19	10.3	1.4	0.21	10.1	1.4	1.0	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
UPF0547	PF10571.9	gi|529078732|ref|YP_008377735.1|	-	0.38	10.9	7.3	1.2	9.3	1.4	2.4	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-ISL3	PF14690.6	gi|529078732|ref|YP_008377735.1|	-	0.51	11.1	5.5	1.4	9.7	5.5	1.8	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Rubredoxin	PF00301.20	gi|529078732|ref|YP_008377735.1|	-	0.89	9.6	8.3	9.3	6.4	0.9	2.9	1	1	2	3	3	3	0	Rubredoxin
zinc_ribbon_5	PF13719.6	gi|529078732|ref|YP_008377735.1|	-	1.1	9.0	3.6	3.7	7.4	3.6	1.8	1	1	0	1	1	1	0	zinc-ribbon	domain
ArsA_HSP20	PF17886.1	gi|529078733|ref|YP_008377736.1|	-	4.7e-14	51.7	0.0	7.1e-14	51.1	0.0	1.3	1	0	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
HSP20	PF00011.21	gi|529078733|ref|YP_008377736.1|	-	1.9e-08	34.4	0.0	1.2e-06	28.6	0.0	2.5	2	1	0	2	2	2	1	Hsp20/alpha	crystallin	family
GvpH	PF05455.11	gi|529078733|ref|YP_008377736.1|	-	0.00037	20.6	0.5	0.00046	20.3	0.5	1.3	1	0	0	1	1	1	1	GvpH
PIH1_CS	PF18201.1	gi|529078733|ref|YP_008377736.1|	-	0.048	14.1	0.0	0.067	13.6	0.0	1.2	1	0	0	1	1	1	0	PIH1	CS-like	domain
Gp_dh_C	PF02800.20	gi|529078734|ref|YP_008377737.1|	-	2.2e-50	170.4	0.0	3e-50	169.9	0.0	1.2	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
Gp_dh_N	PF00044.24	gi|529078734|ref|YP_008377737.1|	-	1.7e-34	118.1	0.0	3.6e-34	117.1	0.0	1.5	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
DapB_N	PF01113.20	gi|529078734|ref|YP_008377737.1|	-	0.0089	16.1	0.1	0.057	13.5	0.0	2.3	3	0	0	3	3	3	1	Dihydrodipicolinate	reductase,	N-terminus
PriA_3primeBD	PF17764.1	gi|529078734|ref|YP_008377737.1|	-	0.12	12.3	0.0	0.62	10.0	0.0	2.0	2	0	0	2	2	2	0	3′	DNA-binding	domain	(3′BD)
PGK	PF00162.19	gi|529078735|ref|YP_008377738.1|	-	2.2e-104	349.4	0.0	2.7e-104	349.1	0.0	1.0	1	0	0	1	1	1	1	Phosphoglycerate	kinase
MMPL	PF03176.15	gi|529078736|ref|YP_008377739.1|	-	4.8e-31	107.9	39.3	2.8e-22	79.1	17.6	2.8	3	0	0	3	3	3	2	MMPL	family
Sterol-sensing	PF12349.8	gi|529078736|ref|YP_008377739.1|	-	8.8e-14	51.6	9.6	9.7e-08	32.0	0.7	2.8	2	0	0	2	2	2	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
Patched	PF02460.18	gi|529078736|ref|YP_008377739.1|	-	5.1e-08	31.5	19.9	2.3e-07	29.3	5.8	2.4	3	0	0	3	3	3	2	Patched	family
ACR_tran	PF00873.19	gi|529078736|ref|YP_008377739.1|	-	0.018	12.7	23.0	0.21	9.2	6.2	2.2	2	0	0	2	2	2	0	AcrB/AcrD/AcrF	family
DUF3464	PF11947.8	gi|529078736|ref|YP_008377739.1|	-	0.27	11.0	1.0	0.81	9.4	1.0	1.8	1	0	0	1	1	1	0	Photosynthesis	affected	mutant	68
Phlebovirus_G2	PF07245.11	gi|529078736|ref|YP_008377739.1|	-	0.31	9.5	1.6	0.51	8.8	1.6	1.2	1	0	0	1	1	1	0	Phlebovirus	glycoprotein	G2
UPF0175	PF03683.13	gi|529078737|ref|YP_008377740.1|	-	8.8e-12	44.6	0.4	8.8e-12	44.6	0.4	1.6	2	0	0	2	2	2	1	Uncharacterised	protein	family	(UPF0175)
RHH_1	PF01402.21	gi|529078737|ref|YP_008377740.1|	-	0.027	14.4	0.9	0.065	13.2	0.9	1.7	1	0	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
DUF3368	PF11848.8	gi|529078738|ref|YP_008377741.1|	-	2.7e-14	52.7	0.2	7.4e-14	51.3	0.0	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF3368)
Metallophos_2	PF12850.7	gi|529078739|ref|YP_008377742.1|	-	1.2e-33	116.7	0.1	1.3e-33	116.5	0.1	1.0	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|529078739|ref|YP_008377742.1|	-	9.1e-06	26.3	6.0	0.00073	20.1	0.7	2.4	1	1	1	2	2	2	2	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.6	gi|529078739|ref|YP_008377742.1|	-	0.04	13.2	0.2	2	7.7	0.1	2.0	1	1	0	2	2	2	0	Metallophosphoesterase,	calcineurin	superfamily
Peptidase_M29	PF02073.15	gi|529078740|ref|YP_008377743.1|	-	1.1e-10	40.9	0.1	1.6e-10	40.3	0.1	1.2	1	0	0	1	1	1	1	Thermophilic	metalloprotease	(M29)
AAA_27	PF13514.6	gi|529078740|ref|YP_008377743.1|	-	0.059	13.0	0.0	0.096	12.3	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
KduI	PF04962.12	gi|529078741|ref|YP_008377744.1|	-	0.0034	16.7	0.6	0.011	15.1	0.2	1.7	1	1	1	2	2	2	1	KduI/IolB	family
DUF2387	PF09526.10	gi|529078741|ref|YP_008377744.1|	-	0.0094	16.1	0.4	0.02	15.0	0.4	1.6	1	0	0	1	1	1	1	Probable	metal-binding	protein	(DUF2387)
HalOD2	PF18547.1	gi|529078741|ref|YP_008377744.1|	-	0.023	14.6	0.4	0.079	12.9	0.4	1.9	1	1	0	1	1	1	0	Halobacterial	output	domain	2
zinc_ribbon_5	PF13719.6	gi|529078741|ref|YP_008377744.1|	-	0.045	13.5	0.4	0.08	12.7	0.4	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
zf_Rg	PF17915.1	gi|529078741|ref|YP_008377744.1|	-	0.13	11.7	0.1	0.24	10.8	0.1	1.4	1	0	0	1	1	1	0	Reverse	gyrase	zinc	finger
GidB	PF02527.15	gi|529078741|ref|YP_008377744.1|	-	0.15	11.4	0.0	0.23	10.8	0.0	1.2	1	0	0	1	1	1	0	rRNA	small	subunit	methyltransferase	G
zinc_ribbon_4	PF13717.6	gi|529078741|ref|YP_008377744.1|	-	0.16	11.9	1.9	0.44	10.5	1.9	1.8	1	1	0	1	1	1	0	zinc-ribbon	domain
PCMT	PF01135.19	gi|529078742|ref|YP_008377745.1|	-	2.1e-62	210.6	0.0	2.5e-62	210.4	0.0	1.0	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_31	PF13847.6	gi|529078742|ref|YP_008377745.1|	-	1.8e-06	27.8	0.0	2.4e-06	27.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|529078742|ref|YP_008377745.1|	-	2.7e-06	28.0	0.0	4.4e-06	27.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
GCD14	PF08704.10	gi|529078742|ref|YP_008377745.1|	-	6.4e-05	22.8	0.1	8.8e-05	22.3	0.1	1.1	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
CMAS	PF02353.20	gi|529078742|ref|YP_008377745.1|	-	0.00012	21.5	0.0	0.00016	21.1	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
RrnaAD	PF00398.20	gi|529078742|ref|YP_008377745.1|	-	0.00018	20.7	0.0	0.00025	20.2	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Fibrillarin	PF01269.17	gi|529078742|ref|YP_008377745.1|	-	0.0099	15.0	0.1	0.014	14.5	0.1	1.1	1	0	0	1	1	1	1	Fibrillarin
Methyltransf_24	PF13578.6	gi|529078742|ref|YP_008377745.1|	-	0.018	16.1	0.1	0.045	14.8	0.1	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_32	PF13679.6	gi|529078742|ref|YP_008377745.1|	-	0.018	15.0	0.0	0.027	14.5	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|529078742|ref|YP_008377745.1|	-	0.022	14.6	0.0	0.032	14.1	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
MTS	PF05175.14	gi|529078742|ref|YP_008377745.1|	-	0.028	14.0	0.0	0.04	13.5	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_4	PF02390.17	gi|529078742|ref|YP_008377745.1|	-	0.049	13.1	0.0	0.071	12.6	0.0	1.2	1	0	0	1	1	1	0	Putative	methyltransferase
DUF938	PF06080.12	gi|529078742|ref|YP_008377745.1|	-	0.054	13.2	0.0	0.073	12.8	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF938)
Methyltransf_11	PF08241.12	gi|529078742|ref|YP_008377745.1|	-	0.078	13.6	0.0	0.13	12.9	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
DOT1	PF08123.13	gi|529078742|ref|YP_008377745.1|	-	0.097	12.2	0.0	0.14	11.7	0.0	1.1	1	0	0	1	1	1	0	Histone	methylation	protein	DOT1
Methyltr_RsmB-F	PF01189.17	gi|529078742|ref|YP_008377745.1|	-	0.099	12.3	0.0	0.15	11.7	0.0	1.2	1	0	0	1	1	1	0	16S	rRNA	methyltransferase	RsmB/F
Methyltransf_18	PF12847.7	gi|529078742|ref|YP_008377745.1|	-	0.12	12.3	0.0	0.17	11.8	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
PCMT	PF01135.19	gi|529078743|ref|YP_008377746.1|	-	7.2e-36	123.9	0.0	9.4e-36	123.5	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_31	PF13847.6	gi|529078743|ref|YP_008377746.1|	-	3.3e-05	23.7	0.0	4e-05	23.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|529078743|ref|YP_008377746.1|	-	4.8e-05	24.0	0.0	0.0001	22.9	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|529078743|ref|YP_008377746.1|	-	8.4e-05	22.2	0.0	0.00012	21.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
DUF5042	PF16445.5	gi|529078743|ref|YP_008377746.1|	-	0.037	12.4	0.0	0.053	11.9	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5042)
PrmA	PF06325.13	gi|529078743|ref|YP_008377746.1|	-	0.039	13.3	0.0	0.062	12.7	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
TRI9	PF08195.11	gi|529078743|ref|YP_008377746.1|	-	0.13	12.1	0.1	0.25	11.3	0.1	1.3	1	0	0	1	1	1	0	TRI9	protein
HTH_31	PF13560.6	gi|529078743|ref|YP_008377746.1|	-	2.3	8.6	9.0	10	6.5	1.5	3.0	3	0	0	3	3	3	0	Helix-turn-helix	domain
CRCB	PF02537.15	gi|529078744|ref|YP_008377747.1|	-	4.9e-18	65.2	10.5	6e-18	65.0	10.5	1.1	1	0	0	1	1	1	1	CrcB-like	protein,	Camphor	Resistance	(CrcB)
CRCB	PF02537.15	gi|529078745|ref|YP_008377748.1|	-	1.3e-22	79.9	10.0	1.6e-22	79.6	10.0	1.2	1	0	0	1	1	1	1	CrcB-like	protein,	Camphor	Resistance	(CrcB)
PGA_cap	PF09587.10	gi|529078747|ref|YP_008377750.1|	-	6.1e-70	235.6	0.0	7.3e-70	235.3	0.0	1.1	1	0	0	1	1	1	1	Bacterial	capsule	synthesis	protein	PGA_cap
Glyco_transf_4	PF13439.6	gi|529078747|ref|YP_008377750.1|	-	0.0022	18.0	1.0	0.05	13.6	1.0	2.2	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
NAD_binding_10	PF13460.6	gi|529078748|ref|YP_008377751.1|	-	1.3e-18	67.6	0.0	1.7e-18	67.2	0.0	1.1	1	0	0	1	1	1	1	NAD(P)H-binding
Epimerase	PF01370.21	gi|529078748|ref|YP_008377751.1|	-	1.6e-13	50.7	0.1	4.2e-13	49.3	0.1	1.7	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NmrA	PF05368.13	gi|529078748|ref|YP_008377751.1|	-	5.2e-12	45.8	0.0	6e-12	45.6	0.0	1.1	1	0	0	1	1	1	1	NmrA-like	family
3Beta_HSD	PF01073.19	gi|529078748|ref|YP_008377751.1|	-	2.8e-06	26.6	0.0	4.4e-06	25.9	0.0	1.3	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|529078748|ref|YP_008377751.1|	-	3.7e-05	23.0	0.0	7.2e-05	22.0	0.0	1.5	2	0	0	2	2	2	1	RmlD	substrate	binding	domain
GDP_Man_Dehyd	PF16363.5	gi|529078748|ref|YP_008377751.1|	-	9.2e-05	22.0	0.0	0.00014	21.3	0.0	1.3	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Semialdhyde_dh	PF01118.24	gi|529078748|ref|YP_008377751.1|	-	0.0011	19.4	0.0	0.0025	18.3	0.0	1.6	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.18	gi|529078748|ref|YP_008377751.1|	-	0.0011	19.2	0.2	0.61	10.4	0.0	2.8	2	1	0	3	3	3	1	TrkA-N	domain
adh_short	PF00106.25	gi|529078748|ref|YP_008377751.1|	-	0.0034	16.9	0.0	0.0046	16.4	0.0	1.3	1	0	0	1	1	1	1	short	chain	dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|529078748|ref|YP_008377751.1|	-	0.0038	17.5	0.3	0.29	11.4	0.1	2.5	2	1	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
DapB_N	PF01113.20	gi|529078748|ref|YP_008377751.1|	-	0.0046	17.1	0.0	0.01	16.0	0.0	1.6	2	0	0	2	2	2	1	Dihydrodipicolinate	reductase,	N-terminus
KR	PF08659.10	gi|529078748|ref|YP_008377751.1|	-	0.016	15.1	0.0	0.031	14.2	0.0	1.7	1	1	0	1	1	1	0	KR	domain
NAD_binding_4	PF07993.12	gi|529078748|ref|YP_008377751.1|	-	0.028	13.6	0.0	0.082	12.1	0.0	1.8	2	0	0	2	2	2	0	Male	sterility	protein
PAC2	PF09754.9	gi|529078748|ref|YP_008377751.1|	-	0.03	14.3	0.0	0.06	13.3	0.0	1.6	1	1	0	1	1	1	0	PAC2	family
Glyco_trans_4_4	PF13579.6	gi|529078748|ref|YP_008377751.1|	-	0.036	14.5	0.6	0.15	12.5	0.6	2.0	1	1	0	1	1	1	0	Glycosyl	transferase	4-like	domain
NAD_binding_2	PF03446.15	gi|529078748|ref|YP_008377751.1|	-	0.16	12.1	0.0	0.96	9.6	0.0	2.0	1	1	1	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
OrfB_Zn_ribbon	PF07282.11	gi|529078749|ref|YP_008377752.1|	-	2.3e-20	72.3	1.8	6e-20	70.9	1.8	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|529078749|ref|YP_008377752.1|	-	2.2e-05	24.7	0.4	5.4e-05	23.4	0.0	1.9	2	0	0	2	2	2	1	Probable	transposase
ABM	PF03992.16	gi|529078749|ref|YP_008377752.1|	-	0.041	14.0	0.1	0.15	12.2	0.0	1.9	2	0	0	2	2	2	0	Antibiotic	biosynthesis	monooxygenase
RAI1	PF08652.11	gi|529078749|ref|YP_008377752.1|	-	0.099	12.8	0.0	0.21	11.8	0.0	1.5	1	0	0	1	1	1	0	RAI1	like	PD-(D/E)XK	nuclease
RTC	PF01137.21	gi|529078750|ref|YP_008377753.1|	-	4e-61	206.0	0.0	5.1e-61	205.7	0.0	1.0	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase
RTC_insert	PF05189.13	gi|529078750|ref|YP_008377753.1|	-	1.3e-11	44.9	0.3	2.1e-11	44.2	0.3	1.4	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase	(RTC),	insert	domain
DUF3368	PF11848.8	gi|529078750|ref|YP_008377753.1|	-	0.063	13.1	0.1	0.13	12.1	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3368)
Aldo_ket_red	PF00248.21	gi|529078751|ref|YP_008377754.1|	-	1.8e-69	234.2	0.0	2.2e-69	233.9	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
PMT_2	PF13231.6	gi|529078752|ref|YP_008377755.1|	-	4.9e-20	72.3	13.4	4.9e-20	72.3	13.4	2.5	2	0	0	2	2	2	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
DUF2723	PF11028.8	gi|529078752|ref|YP_008377755.1|	-	0.00095	19.1	12.3	0.0013	18.7	9.0	2.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2723)
PMT	PF02366.18	gi|529078752|ref|YP_008377755.1|	-	0.0025	17.4	9.8	0.0025	17.4	9.8	2.0	2	0	0	2	2	2	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PsiE	PF06146.12	gi|529078752|ref|YP_008377755.1|	-	2.5	8.5	8.0	9.7	6.7	4.7	3.0	2	0	0	2	2	2	0	Phosphate-starvation-inducible	E
SprT-like	PF10263.9	gi|529078753|ref|YP_008377756.1|	-	1.4e-07	31.4	0.0	1.8e-07	31.0	0.0	1.3	1	0	0	1	1	1	1	SprT-like	family
NIF3	PF01784.18	gi|529078754|ref|YP_008377757.1|	-	7.6e-50	169.8	0.0	8.8e-50	169.6	0.0	1.0	1	0	0	1	1	1	1	NIF3	(NGG1p	interacting	factor	3)
CoA_binding_2	PF13380.6	gi|529078754|ref|YP_008377757.1|	-	0.13	12.7	0.1	1.4	9.5	0.0	2.1	2	0	0	2	2	2	0	CoA	binding	domain
PQQ_2	PF13360.6	gi|529078755|ref|YP_008377758.1|	-	4.5e-35	121.4	16.1	4.9e-21	75.4	4.3	3.0	2	1	1	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.6	gi|529078755|ref|YP_008377758.1|	-	7.9e-29	99.4	38.0	2.4e-06	27.9	1.2	8.0	8	0	0	8	8	8	7	PQQ-like	domain
PQQ	PF01011.21	gi|529078755|ref|YP_008377758.1|	-	6.5e-22	76.4	10.9	4.9e-05	23.0	0.4	7.4	7	0	0	7	7	7	6	PQQ	enzyme	repeat
BUD22	PF09073.10	gi|529078756|ref|YP_008377759.1|	-	9.3	5.5	14.7	12	5.1	14.7	1.1	1	0	0	1	1	1	0	BUD22
Arginase	PF00491.21	gi|529078757|ref|YP_008377760.1|	-	2.4e-52	178.2	1.8	3.1e-52	177.8	1.8	1.1	1	0	0	1	1	1	1	Arginase	family
EFP_N	PF08207.12	gi|529078758|ref|YP_008377761.1|	-	6.8e-05	22.8	0.0	0.00036	20.5	0.0	1.9	2	0	0	2	2	2	1	Elongation	factor	P	(EF-P)	KOW-like	domain
eIF-5a	PF01287.20	gi|529078758|ref|YP_008377761.1|	-	0.003	17.6	0.5	0.0056	16.8	0.5	1.5	1	0	0	1	1	1	1	Eukaryotic	elongation	factor	5A	hypusine,	DNA-binding	OB	fold
EFP	PF01132.20	gi|529078758|ref|YP_008377761.1|	-	0.046	13.8	2.3	0.28	11.2	0.2	2.3	2	0	0	2	2	2	0	Elongation	factor	P	(EF-P)	OB	domain
ABC1	PF03109.16	gi|529078759|ref|YP_008377762.1|	-	4.2e-27	94.7	0.0	1.7e-26	92.7	0.0	2.0	2	0	0	2	2	2	1	ABC1	family
APH	PF01636.23	gi|529078759|ref|YP_008377762.1|	-	0.00042	20.3	0.2	0.0095	15.9	0.2	3.0	1	1	0	1	1	1	1	Phosphotransferase	enzyme	family
Pkinase	PF00069.25	gi|529078759|ref|YP_008377762.1|	-	0.0055	16.1	0.0	0.0089	15.4	0.0	1.3	1	0	0	1	1	1	1	Protein	kinase	domain
WaaY	PF06176.11	gi|529078759|ref|YP_008377762.1|	-	0.081	12.5	0.0	0.26	10.9	0.0	1.7	1	1	1	2	2	2	0	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
HSP20	PF00011.21	gi|529078760|ref|YP_008377763.1|	-	1.1e-11	44.8	0.0	1.2e-11	44.6	0.0	1.0	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|529078760|ref|YP_008377763.1|	-	3.4e-05	23.3	0.0	6e-05	22.5	0.0	1.5	1	1	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
HEAT_2	PF13646.6	gi|529078761|ref|YP_008377764.1|	-	2.9e-06	27.6	14.4	0.099	13.0	0.9	4.6	3	2	1	4	4	4	3	HEAT	repeats
Adaptin_N	PF01602.20	gi|529078761|ref|YP_008377764.1|	-	0.00021	20.0	0.0	0.029	12.9	0.0	2.1	2	0	0	2	2	2	2	Adaptin	N	terminal	region
HEAT_EZ	PF13513.6	gi|529078761|ref|YP_008377764.1|	-	0.00065	20.2	8.4	0.57	10.7	0.7	4.7	4	2	1	5	5	5	2	HEAT-like	repeat
HEAT	PF02985.22	gi|529078761|ref|YP_008377764.1|	-	1.1	9.7	5.1	38	4.9	0.0	4.7	5	1	1	6	6	6	0	HEAT	repeat
SBP_bac_5	PF00496.22	gi|529078762|ref|YP_008377765.1|	-	1.4e-38	132.8	9.0	2.1e-38	132.3	9.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|529078762|ref|YP_008377765.1|	-	0.00048	19.9	0.8	0.0014	18.3	0.8	1.8	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF4992	PF16383.5	gi|529078762|ref|YP_008377765.1|	-	0.023	14.2	0.9	0.061	12.8	0.9	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function
BPD_transp_1	PF00528.22	gi|529078763|ref|YP_008377766.1|	-	6.8e-38	130.3	13.7	6.8e-38	130.3	13.7	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
UBA_6	PF18039.1	gi|529078763|ref|YP_008377766.1|	-	0.00046	20.1	0.0	0.00081	19.3	0.0	1.3	1	0	0	1	1	1	1	UBA-like	domain
BPD_transp_1	PF00528.22	gi|529078764|ref|YP_008377767.1|	-	1.8e-24	86.5	11.7	1.8e-24	86.5	11.7	1.9	1	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|529078764|ref|YP_008377767.1|	-	0.22	11.5	0.2	0.22	11.5	0.2	3.0	3	0	0	3	3	3	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
ABC_tran	PF00005.27	gi|529078765|ref|YP_008377768.1|	-	2.3e-55	186.9	0.0	3.1e-28	99.0	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
oligo_HPY	PF08352.12	gi|529078765|ref|YP_008377768.1|	-	1.9e-35	121.2	0.8	5.3e-19	68.5	0.1	2.5	2	0	0	2	2	2	2	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|529078765|ref|YP_008377768.1|	-	9.3e-16	58.5	2.0	2.2e-06	27.7	0.1	4.2	3	1	1	4	4	4	3	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|529078765|ref|YP_008377768.1|	-	1.3e-10	41.6	4.6	0.00014	22.1	0.1	3.8	2	2	0	2	2	2	2	AAA	domain
AAA_16	PF13191.6	gi|529078765|ref|YP_008377768.1|	-	3.1e-08	34.2	0.0	0.00052	20.4	0.0	2.5	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_29	PF13555.6	gi|529078765|ref|YP_008377768.1|	-	3.8e-07	29.8	0.6	0.0032	17.2	0.2	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|529078765|ref|YP_008377768.1|	-	4.9e-07	29.8	0.0	0.013	15.4	0.0	2.3	2	0	0	2	2	2	2	RsgA	GTPase
SMC_N	PF02463.19	gi|529078765|ref|YP_008377768.1|	-	1.6e-06	27.7	7.6	0.062	12.7	0.2	4.1	3	1	0	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
ABC_ATPase	PF09818.9	gi|529078765|ref|YP_008377768.1|	-	3.7e-06	26.0	3.0	0.052	12.4	0.2	3.9	5	1	0	5	5	3	2	Predicted	ATPase	of	the	ABC	class
NB-ARC	PF00931.22	gi|529078765|ref|YP_008377768.1|	-	5.6e-06	25.7	0.2	0.031	13.4	0.0	2.4	2	0	0	2	2	2	2	NB-ARC	domain
TniB	PF05621.11	gi|529078765|ref|YP_008377768.1|	-	1.6e-05	24.4	1.0	0.0076	15.7	0.1	3.2	3	0	0	3	3	3	1	Bacterial	TniB	protein
MMR_HSR1	PF01926.23	gi|529078765|ref|YP_008377768.1|	-	2.7e-05	24.2	0.0	0.029	14.4	0.0	2.5	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
AAA_24	PF13479.6	gi|529078765|ref|YP_008377768.1|	-	3.9e-05	23.5	0.0	0.072	12.8	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_23	PF13476.6	gi|529078765|ref|YP_008377768.1|	-	4.5e-05	24.1	0.0	0.16	12.4	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
AAA_25	PF13481.6	gi|529078765|ref|YP_008377768.1|	-	6.2e-05	22.7	0.1	0.11	12.1	0.0	2.8	2	1	0	2	2	2	2	AAA	domain
PRK	PF00485.18	gi|529078765|ref|YP_008377768.1|	-	0.00011	22.0	0.0	0.12	12.1	0.0	2.3	2	0	0	2	2	2	2	Phosphoribulokinase	/	Uridine	kinase	family
NACHT	PF05729.12	gi|529078765|ref|YP_008377768.1|	-	0.00013	21.9	2.5	0.25	11.3	0.1	3.0	3	0	0	3	3	3	2	NACHT	domain
MeaB	PF03308.16	gi|529078765|ref|YP_008377768.1|	-	0.00022	20.3	0.9	0.00028	20.0	0.0	1.5	2	0	0	2	2	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
ATPase	PF06745.13	gi|529078765|ref|YP_008377768.1|	-	0.00031	20.2	0.2	0.32	10.3	0.0	2.6	2	0	0	2	2	2	2	KaiC
RNA_helicase	PF00910.22	gi|529078765|ref|YP_008377768.1|	-	0.00044	20.6	0.0	1.5	9.2	0.0	2.5	2	0	0	2	2	2	2	RNA	helicase
MobB	PF03205.14	gi|529078765|ref|YP_008377768.1|	-	0.0006	19.7	0.1	0.83	9.6	0.0	2.4	2	0	0	2	2	2	2	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
TsaE	PF02367.17	gi|529078765|ref|YP_008377768.1|	-	0.00068	19.6	0.1	0.68	9.9	0.0	2.4	2	0	0	2	2	2	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Roc	PF08477.13	gi|529078765|ref|YP_008377768.1|	-	0.00074	19.7	0.1	1.2	9.3	0.0	2.3	2	0	0	2	2	2	2	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA	PF00004.29	gi|529078765|ref|YP_008377768.1|	-	0.0011	19.3	0.0	0.34	11.3	0.0	2.6	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.6	gi|529078765|ref|YP_008377768.1|	-	0.0017	18.5	0.1	2.8	8.1	0.1	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_7	PF12775.7	gi|529078765|ref|YP_008377768.1|	-	0.0028	17.2	0.0	2.3	7.7	0.0	2.3	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
Septin	PF00735.18	gi|529078765|ref|YP_008377768.1|	-	0.0028	17.0	0.0	2.3	7.4	0.0	2.2	2	0	0	2	2	2	2	Septin
IstB_IS21	PF01695.17	gi|529078765|ref|YP_008377768.1|	-	0.0029	17.4	0.1	7.6	6.2	0.0	3.1	3	0	0	3	3	3	0	IstB-like	ATP	binding	protein
AAA_18	PF13238.6	gi|529078765|ref|YP_008377768.1|	-	0.005	17.4	0.1	4.3	7.9	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
NTPase_1	PF03266.15	gi|529078765|ref|YP_008377768.1|	-	0.0056	16.6	0.3	1.8	8.4	0.0	2.6	2	0	0	2	2	2	1	NTPase
AAA_30	PF13604.6	gi|529078765|ref|YP_008377768.1|	-	0.008	15.9	0.0	2.4	7.8	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
PduV-EutP	PF10662.9	gi|529078765|ref|YP_008377768.1|	-	0.011	15.5	0.1	0.33	10.7	0.1	2.3	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
Sigma54_activat	PF00158.26	gi|529078765|ref|YP_008377768.1|	-	0.011	15.4	0.0	7.2	6.3	0.0	2.5	2	0	0	2	2	2	0	Sigma-54	interaction	domain
PhoH	PF02562.16	gi|529078765|ref|YP_008377768.1|	-	0.012	15.1	0.0	3.3	7.1	0.0	2.4	2	0	0	2	2	2	0	PhoH-like	protein
AAA_5	PF07728.14	gi|529078765|ref|YP_008377768.1|	-	0.012	15.6	0.1	1.3	9.0	0.0	2.5	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
Zeta_toxin	PF06414.12	gi|529078765|ref|YP_008377768.1|	-	0.018	14.3	0.2	2.2	7.5	0.0	2.6	3	0	0	3	3	2	0	Zeta	toxin
DUF87	PF01935.17	gi|529078765|ref|YP_008377768.1|	-	0.025	14.7	0.3	0.48	10.5	0.0	2.4	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
DUF815	PF05673.13	gi|529078765|ref|YP_008377768.1|	-	0.049	12.8	0.0	2.2	7.4	0.0	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF815)
ATP-synt_ab	PF00006.25	gi|529078765|ref|YP_008377768.1|	-	0.055	13.1	0.0	2.1	8.0	0.0	2.2	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
cobW	PF02492.19	gi|529078765|ref|YP_008377768.1|	-	0.069	12.7	0.5	5	6.7	0.0	2.4	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
FeoB_N	PF02421.18	gi|529078765|ref|YP_008377768.1|	-	0.074	12.6	0.1	1.9	8.0	0.0	2.3	2	0	0	2	2	2	0	Ferrous	iron	transport	protein	B
AAA_15	PF13175.6	gi|529078765|ref|YP_008377768.1|	-	0.094	12.4	0.1	9.7	5.8	0.0	2.5	3	0	0	3	3	2	0	AAA	ATPase	domain
T2SSE	PF00437.20	gi|529078765|ref|YP_008377768.1|	-	0.097	11.7	0.0	1.6	7.8	0.0	2.3	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
DLIC	PF05783.11	gi|529078765|ref|YP_008377768.1|	-	0.12	11.2	0.3	2.7	6.7	0.0	2.2	2	0	0	2	2	2	0	Dynein	light	intermediate	chain	(DLIC)
G-alpha	PF00503.20	gi|529078765|ref|YP_008377768.1|	-	0.22	10.6	0.0	8.5	5.4	0.0	2.1	2	0	0	2	2	2	0	G-protein	alpha	subunit
SbcCD_C	PF13558.6	gi|529078765|ref|YP_008377768.1|	-	1.6	9.0	5.0	38	4.6	1.0	3.6	2	2	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
OrfB_Zn_ribbon	PF07282.11	gi|529078766|ref|YP_008377769.1|	-	4.9e-23	80.8	1.3	1e-22	79.8	1.3	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|529078766|ref|YP_008377769.1|	-	3.2e-05	24.2	0.2	3.2e-05	24.2	0.2	2.2	3	0	0	3	3	3	1	Probable	transposase
Fe-ADH	PF00465.19	gi|529078766|ref|YP_008377769.1|	-	0.13	11.1	0.0	0.21	10.4	0.0	1.2	1	0	0	1	1	1	0	Iron-containing	alcohol	dehydrogenase
Excalibur	PF05901.11	gi|529078766|ref|YP_008377769.1|	-	0.58	10.8	3.4	6.3	7.5	0.1	3.4	3	0	0	3	3	3	0	Excalibur	calcium-binding	domain
GIDE	PF12483.8	gi|529078768|ref|YP_008377771.1|	-	0.014	14.7	0.0	0.03	13.7	0.0	1.6	1	1	0	1	1	1	0	E3	Ubiquitin	ligase
CSD	PF00313.22	gi|529078770|ref|YP_008377773.1|	-	1.8e-21	75.7	0.5	2e-21	75.6	0.5	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
S1-like	PF14444.6	gi|529078770|ref|YP_008377773.1|	-	0.012	15.5	1.0	0.018	14.9	1.0	1.4	1	1	0	1	1	1	0	S1-like
Rho_RNA_bind	PF07497.12	gi|529078770|ref|YP_008377773.1|	-	0.025	14.5	0.0	0.03	14.2	0.0	1.1	1	0	0	1	1	1	0	Rho	termination	factor,	RNA-binding	domain
OB_RNB	PF08206.11	gi|529078770|ref|YP_008377773.1|	-	0.029	14.0	2.1	0.047	13.4	2.1	1.4	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
UbiA	PF01040.18	gi|529078771|ref|YP_008377774.1|	-	1.8e-07	30.7	28.8	1.8e-07	30.7	28.8	3.0	1	1	2	3	3	3	1	UbiA	prenyltransferase	family
BPL_LplA_LipB_2	PF16917.5	gi|529078771|ref|YP_008377774.1|	-	0.051	13.1	0.7	0.1	12.1	0.7	1.5	1	0	0	1	1	1	0	Biotin/lipoate	A/B	protein	ligase	family
zf_UBZ	PF18439.1	gi|529078773|ref|YP_008377776.1|	-	0.047	13.3	1.3	2.1	8.0	0.1	2.2	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Abhydrolase_3	PF07859.13	gi|529078775|ref|YP_008377778.1|	-	6.1e-72	241.9	0.5	7.4e-72	241.6	0.5	1.1	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
COesterase	PF00135.28	gi|529078775|ref|YP_008377778.1|	-	1e-07	31.2	0.1	2.3e-07	30.1	0.1	1.5	1	1	0	1	1	1	1	Carboxylesterase	family
Chlorophyllase2	PF12740.7	gi|529078775|ref|YP_008377778.1|	-	0.0013	17.7	0.0	0.002	17.1	0.0	1.3	1	0	0	1	1	1	1	Chlorophyllase	enzyme
Peptidase_S9	PF00326.21	gi|529078775|ref|YP_008377778.1|	-	0.0032	17.0	0.2	0.047	13.2	0.1	2.4	3	0	0	3	3	3	1	Prolyl	oligopeptidase	family
Thioesterase	PF00975.20	gi|529078775|ref|YP_008377778.1|	-	0.056	13.5	0.0	0.08	13.0	0.0	1.2	1	0	0	1	1	1	0	Thioesterase	domain
Say1_Mug180	PF10340.9	gi|529078775|ref|YP_008377778.1|	-	0.072	11.9	0.4	0.3	9.9	0.4	1.8	1	1	0	1	1	1	0	Steryl	acetyl	hydrolase
DUF2974	PF11187.8	gi|529078775|ref|YP_008377778.1|	-	0.15	11.6	0.0	0.22	11.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2974)
Esterase	PF00756.20	gi|529078775|ref|YP_008377778.1|	-	0.25	10.9	0.5	6.5	6.3	0.5	2.1	1	1	0	1	1	1	0	Putative	esterase
PvlArgDC	PF01862.16	gi|529078777|ref|YP_008377780.1|	-	1.3e-31	109.6	0.0	1.5e-31	109.4	0.0	1.0	1	0	0	1	1	1	1	Pyruvoyl-dependent	arginine	decarboxylase	(PvlArgDC)
Fer4_22	PF17179.4	gi|529078778|ref|YP_008377781.1|	-	4.9e-29	101.0	12.1	8.1e-29	100.3	12.1	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|529078778|ref|YP_008377781.1|	-	1.4e-06	28.8	3.8	0.0066	17.0	0.4	2.7	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|529078778|ref|YP_008377781.1|	-	6.1e-06	26.3	8.9	0.011	15.9	1.3	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|529078778|ref|YP_008377781.1|	-	5.4e-05	23.7	9.6	0.013	16.1	0.4	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|529078778|ref|YP_008377781.1|	-	0.00011	22.0	11.5	0.018	15.1	2.3	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|529078778|ref|YP_008377781.1|	-	0.00051	20.1	12.2	0.014	15.5	2.1	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|529078778|ref|YP_008377781.1|	-	0.0014	19.0	16.3	0.011	16.2	2.4	2.4	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|529078778|ref|YP_008377781.1|	-	0.0057	17.6	7.8	0.76	10.7	0.3	2.5	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.6	gi|529078778|ref|YP_008377781.1|	-	0.021	14.9	13.1	0.21	11.7	3.5	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|529078778|ref|YP_008377781.1|	-	0.048	13.7	21.7	0.24	11.6	5.4	2.7	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|529078778|ref|YP_008377781.1|	-	0.055	13.3	18.4	0.15	12.0	3.7	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Plavaka	PF18759.1	gi|529078778|ref|YP_008377781.1|	-	0.088	12.0	0.2	0.14	11.3	0.2	1.2	1	0	0	1	1	1	0	Plavaka	transposase
Fer4_18	PF13746.6	gi|529078778|ref|YP_008377781.1|	-	0.29	11.3	6.2	3.5	7.9	1.8	2.3	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|529078778|ref|YP_008377781.1|	-	6.8	7.3	14.7	0.29	11.7	3.5	3.0	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
NAD_binding_1	PF00175.21	gi|529078779|ref|YP_008377782.1|	-	6.3e-13	49.3	0.0	1e-12	48.6	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	NAD-binding	domain
FAD_binding_6	PF00970.24	gi|529078779|ref|YP_008377782.1|	-	6.2e-08	32.9	0.0	1.1e-07	32.2	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
DHODB_Fe-S_bind	PF10418.9	gi|529078779|ref|YP_008377782.1|	-	1.1e-07	31.6	0.7	2.2e-07	30.6	0.7	1.6	1	0	0	1	1	1	1	Iron-sulfur	cluster	binding	domain	of	dihydroorotate	dehydrogenase	B
Oxidored_q6	PF01058.22	gi|529078780|ref|YP_008377783.1|	-	7.1e-25	87.3	0.0	1.3e-24	86.5	0.0	1.4	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
NiFeSe_Hases	PF00374.19	gi|529078781|ref|YP_008377784.1|	-	2.2e-28	99.5	0.1	1.5e-14	53.9	0.1	3.0	1	1	1	3	3	3	3	Nickel-dependent	hydrogenase
CBS	PF00571.28	gi|529078782|ref|YP_008377785.1|	-	2.2e-39	133.7	13.4	1.3e-12	48.0	1.2	4.4	4	0	0	4	4	4	4	CBS	domain
HycI	PF01750.18	gi|529078782|ref|YP_008377785.1|	-	6.2e-17	61.6	0.0	2.5e-16	59.7	0.0	2.0	2	0	0	2	2	2	1	Hydrogenase	maturation	protease
sCache_3_2	PF17203.4	gi|529078782|ref|YP_008377785.1|	-	0.018	15.1	0.6	1.6	8.9	0.1	3.0	2	1	0	2	2	2	0	Single	cache	domain	3
DUF1508	PF07411.12	gi|529078782|ref|YP_008377785.1|	-	0.059	13.2	0.0	0.14	12.0	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1508)
AAA	PF00004.29	gi|529078783|ref|YP_008377786.1|	-	6.9e-101	333.9	0.0	2.8e-49	166.9	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.18	gi|529078783|ref|YP_008377786.1|	-	1.9e-30	104.9	0.0	8.3e-30	102.8	0.1	2.1	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_lid_3	PF17862.1	gi|529078783|ref|YP_008377786.1|	-	3.2e-28	97.2	1.9	1.1e-13	50.7	0.5	2.5	2	0	0	2	2	2	2	AAA+	lid	domain
CDC48_2	PF02933.17	gi|529078783|ref|YP_008377786.1|	-	9.5e-17	60.5	0.1	7.9e-16	57.6	0.2	2.5	3	0	0	3	3	2	1	Cell	division	protein	48	(CDC48),	domain	2
RuvB_N	PF05496.12	gi|529078783|ref|YP_008377786.1|	-	6e-15	55.3	0.0	9.8e-07	28.6	0.0	2.8	3	0	0	3	3	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|529078783|ref|YP_008377786.1|	-	5.7e-14	52.9	1.4	4.2e-06	27.3	0.2	4.1	2	2	1	3	3	3	2	AAA	ATPase	domain
AAA_2	PF07724.14	gi|529078783|ref|YP_008377786.1|	-	4.3e-13	49.7	0.0	1.2e-05	25.5	0.0	2.7	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_5	PF07728.14	gi|529078783|ref|YP_008377786.1|	-	7e-12	45.5	2.0	7.7e-05	22.7	0.1	4.4	3	2	0	3	3	2	2	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|529078783|ref|YP_008377786.1|	-	5.9e-11	42.8	0.5	0.00095	19.4	0.0	4.1	2	2	1	4	4	4	2	AAA	domain
AAA_33	PF13671.6	gi|529078783|ref|YP_008377786.1|	-	7.3e-11	42.4	0.0	4.6e-05	23.6	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
TIP49	PF06068.13	gi|529078783|ref|YP_008377786.1|	-	1.3e-10	41.0	0.0	0.00037	19.8	0.0	3.3	3	0	0	3	3	3	2	TIP49	P-loop	domain
AAA_25	PF13481.6	gi|529078783|ref|YP_008377786.1|	-	2.1e-07	30.7	0.7	0.83	9.2	0.0	4.4	4	0	0	4	4	4	2	AAA	domain
AAA_14	PF13173.6	gi|529078783|ref|YP_008377786.1|	-	4.2e-07	30.1	0.0	0.0065	16.5	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.17	gi|529078783|ref|YP_008377786.1|	-	4.6e-07	29.7	0.0	0.037	13.7	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
Mg_chelatase	PF01078.21	gi|529078783|ref|YP_008377786.1|	-	7.5e-07	28.7	0.4	0.042	13.2	0.0	2.8	3	0	0	3	3	3	2	Magnesium	chelatase,	subunit	ChlI
RNA_helicase	PF00910.22	gi|529078783|ref|YP_008377786.1|	-	9e-07	29.3	0.0	0.057	13.8	0.0	2.6	2	0	0	2	2	2	2	RNA	helicase
AAA_18	PF13238.6	gi|529078783|ref|YP_008377786.1|	-	9.5e-07	29.4	0.0	0.071	13.7	0.0	2.9	3	0	0	3	3	2	2	AAA	domain
AAA_7	PF12775.7	gi|529078783|ref|YP_008377786.1|	-	4.6e-06	26.3	0.0	0.082	12.4	0.0	2.5	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
Sigma54_activat	PF00158.26	gi|529078783|ref|YP_008377786.1|	-	6e-06	26.1	0.0	0.22	11.2	0.0	3.1	3	0	0	3	3	3	2	Sigma-54	interaction	domain
AAA_3	PF07726.11	gi|529078783|ref|YP_008377786.1|	-	9.8e-06	25.5	0.0	0.12	12.3	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase	PF06745.13	gi|529078783|ref|YP_008377786.1|	-	1.1e-05	24.9	0.2	0.5	9.7	0.0	3.3	3	0	0	3	3	3	2	KaiC
AAA_28	PF13521.6	gi|529078783|ref|YP_008377786.1|	-	1.2e-05	25.6	0.0	0.037	14.3	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
TsaE	PF02367.17	gi|529078783|ref|YP_008377786.1|	-	2.5e-05	24.3	0.0	0.2	11.6	0.0	2.4	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
DUF815	PF05673.13	gi|529078783|ref|YP_008377786.1|	-	4.7e-05	22.7	0.0	0.21	10.7	0.0	2.3	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
AAA_24	PF13479.6	gi|529078783|ref|YP_008377786.1|	-	7.8e-05	22.5	0.0	0.23	11.2	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_30	PF13604.6	gi|529078783|ref|YP_008377786.1|	-	9.6e-05	22.2	0.1	0.66	9.7	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
PhoH	PF02562.16	gi|529078783|ref|YP_008377786.1|	-	0.0001	21.8	0.3	0.51	9.8	0.0	2.9	3	0	0	3	3	3	2	PhoH-like	protein
ABC_tran	PF00005.27	gi|529078783|ref|YP_008377786.1|	-	0.00011	22.7	0.0	0.78	10.2	0.0	2.6	2	0	0	2	2	2	2	ABC	transporter
AAA_11	PF13086.6	gi|529078783|ref|YP_008377786.1|	-	0.00014	21.7	0.1	0.31	10.8	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
NB-ARC	PF00931.22	gi|529078783|ref|YP_008377786.1|	-	0.00018	20.8	0.0	0.18	11.0	0.0	2.4	2	0	0	2	2	2	2	NB-ARC	domain
ATPase_2	PF01637.18	gi|529078783|ref|YP_008377786.1|	-	0.0003	20.8	0.0	1.1	9.1	0.0	3.4	2	2	1	3	3	3	1	ATPase	domain	predominantly	from	Archaea
Parvo_NS1	PF01057.17	gi|529078783|ref|YP_008377786.1|	-	0.00035	19.7	0.0	0.39	9.7	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
DUF2075	PF09848.9	gi|529078783|ref|YP_008377786.1|	-	0.00038	19.8	0.0	0.41	9.8	0.0	2.2	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
AAA_17	PF13207.6	gi|529078783|ref|YP_008377786.1|	-	0.00048	20.6	0.0	1.5	9.2	0.0	3.6	3	0	0	3	3	3	1	AAA	domain
NACHT	PF05729.12	gi|529078783|ref|YP_008377786.1|	-	0.00049	20.1	0.1	0.55	10.1	0.0	3.0	3	0	0	3	3	2	1	NACHT	domain
Zeta_toxin	PF06414.12	gi|529078783|ref|YP_008377786.1|	-	0.0013	18.1	0.3	1.7	7.8	0.0	2.6	2	0	0	2	2	2	2	Zeta	toxin
Sigma54_activ_2	PF14532.6	gi|529078783|ref|YP_008377786.1|	-	0.0016	18.6	0.0	2.6	8.1	0.0	2.5	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_19	PF13245.6	gi|529078783|ref|YP_008377786.1|	-	0.0017	18.7	0.6	2.6	8.4	0.0	2.8	2	1	0	3	3	2	1	AAA	domain
NTPase_1	PF03266.15	gi|529078783|ref|YP_008377786.1|	-	0.0017	18.3	1.1	3.9	7.3	0.0	3.7	4	1	1	5	5	3	0	NTPase
IPT	PF01745.16	gi|529078783|ref|YP_008377786.1|	-	0.0023	17.4	0.9	0.68	9.3	0.0	2.8	3	0	0	3	3	3	1	Isopentenyl	transferase
Vps4_C	PF09336.10	gi|529078783|ref|YP_008377786.1|	-	0.0037	17.2	0.5	0.87	9.6	0.0	3.0	3	0	0	3	3	2	1	Vps4	C	terminal	oligomerisation	domain
Bac_DnaA	PF00308.18	gi|529078783|ref|YP_008377786.1|	-	0.009	15.9	0.0	5.5	6.7	0.0	2.5	2	0	0	2	2	2	0	Bacterial	dnaA	protein
KAP_NTPase	PF07693.14	gi|529078783|ref|YP_008377786.1|	-	0.0097	15.2	0.1	3.9	6.6	0.0	3.3	3	1	1	4	4	4	0	KAP	family	P-loop	domain
Cytidylate_kin	PF02224.18	gi|529078783|ref|YP_008377786.1|	-	0.013	15.2	0.1	4.4	7.0	0.0	2.5	2	0	0	2	2	2	0	Cytidylate	kinase
Viral_helicase1	PF01443.18	gi|529078783|ref|YP_008377786.1|	-	0.017	14.9	0.0	1.4	8.6	0.0	2.2	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
CPT	PF07931.12	gi|529078783|ref|YP_008377786.1|	-	0.024	14.5	0.0	3.9	7.3	0.0	2.4	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
Hydin_ADK	PF17213.3	gi|529078783|ref|YP_008377786.1|	-	0.05	13.9	0.0	4.1	7.6	0.0	2.3	2	0	0	2	2	2	0	Hydin	Adenylate	kinase-like	domain
ResIII	PF04851.15	gi|529078783|ref|YP_008377786.1|	-	0.062	13.3	0.0	14	5.7	0.0	2.5	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
Zot	PF05707.12	gi|529078783|ref|YP_008377786.1|	-	0.071	12.7	0.0	3.6	7.2	0.0	2.5	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
SKI	PF01202.22	gi|529078783|ref|YP_008377786.1|	-	0.073	13.2	0.1	7.7	6.6	0.0	2.4	2	0	0	2	2	2	0	Shikimate	kinase
Torsin	PF06309.11	gi|529078783|ref|YP_008377786.1|	-	0.074	13.2	0.0	4.8	7.3	0.0	2.4	2	0	0	2	2	2	0	Torsin
AFG1_ATPase	PF03969.16	gi|529078783|ref|YP_008377786.1|	-	0.081	11.8	0.0	4.7	6.0	0.0	2.2	2	0	0	2	2	2	0	AFG1-like	ATPase
Rad17	PF03215.15	gi|529078783|ref|YP_008377786.1|	-	0.1	12.5	0.0	11	5.8	0.0	2.7	2	1	0	2	2	2	0	Rad17	P-loop	domain
Cytidylate_kin2	PF13189.6	gi|529078783|ref|YP_008377786.1|	-	0.15	12.2	0.0	8.6	6.5	0.0	2.4	2	0	0	2	2	2	0	Cytidylate	kinase-like	family
Abhydrolase_1	PF00561.20	gi|529078784|ref|YP_008377787.1|	-	2e-29	103.0	0.2	2.5e-29	102.7	0.2	1.1	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Peptidase_S9	PF00326.21	gi|529078784|ref|YP_008377787.1|	-	0.0014	18.1	0.1	1.5	8.3	0.0	2.6	2	1	0	2	2	2	2	Prolyl	oligopeptidase	family
Hydrolase_4	PF12146.8	gi|529078784|ref|YP_008377787.1|	-	0.002	17.4	0.0	0.0039	16.5	0.0	1.4	1	0	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_6	PF12697.7	gi|529078784|ref|YP_008377787.1|	-	0.0058	17.3	16.7	0.016	15.8	16.7	1.7	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Esterase	PF00756.20	gi|529078784|ref|YP_008377787.1|	-	0.0065	16.1	0.1	0.036	13.7	0.0	2.0	2	0	0	2	2	2	1	Putative	esterase
Cys_Met_Meta_PP	PF01053.20	gi|529078785|ref|YP_008377788.1|	-	5.4e-133	443.2	0.0	6.1e-133	443.1	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_1_2	PF00155.21	gi|529078785|ref|YP_008377788.1|	-	1.4e-07	31.0	0.1	2e-07	30.5	0.1	1.2	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|529078785|ref|YP_008377788.1|	-	0.0001	21.8	0.9	0.00018	21.0	0.9	1.3	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_5	PF00266.19	gi|529078785|ref|YP_008377788.1|	-	0.00013	21.0	0.1	0.00021	20.4	0.1	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.21	gi|529078785|ref|YP_008377788.1|	-	0.033	13.5	0.7	0.19	11.0	0.7	2.1	1	1	0	1	1	1	0	Beta-eliminating	lyase
Aldo_ket_red	PF00248.21	gi|529078786|ref|YP_008377789.1|	-	1.8e-56	191.5	0.0	2e-56	191.3	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Aminotran_5	PF00266.19	gi|529078787|ref|YP_008377790.1|	-	1.5e-30	106.4	0.0	1.9e-30	106.1	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
VAPB_antitox	PF02697.14	gi|529078788|ref|YP_008377791.1|	-	9.7e-20	71.1	0.2	1.1e-19	71.0	0.2	1.0	1	0	0	1	1	1	1	Putative	antitoxin
RHH_1	PF01402.21	gi|529078788|ref|YP_008377791.1|	-	0.18	11.8	3.8	5.2	7.2	0.1	2.4	2	1	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
PIN	PF01850.21	gi|529078789|ref|YP_008377792.1|	-	1.9e-10	41.3	0.4	2.2e-10	41.1	0.4	1.0	1	0	0	1	1	1	1	PIN	domain
DNA_ligase_aden	PF01653.18	gi|529078790|ref|YP_008377793.1|	-	3.8e-107	358.1	0.0	1.2e-106	356.5	0.0	1.7	2	0	0	2	2	2	1	NAD-dependent	DNA	ligase	adenylation	domain
DNA_ligase_OB	PF03120.16	gi|529078790|ref|YP_008377793.1|	-	5.4e-30	103.1	3.7	1.1e-29	102.2	3.7	1.5	1	0	0	1	1	1	1	NAD-dependent	DNA	ligase	OB-fold	domain
HHH_2	PF12826.7	gi|529078790|ref|YP_008377793.1|	-	1.2e-18	67.0	0.1	4.6e-18	65.1	0.1	2.1	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|529078790|ref|YP_008377793.1|	-	6.6e-15	55.5	0.1	1.8e-07	31.6	0.0	2.8	2	0	0	2	2	2	2	Helix-hairpin-helix	domain
BRCT	PF00533.26	gi|529078790|ref|YP_008377793.1|	-	1e-14	54.6	0.0	2.2e-14	53.6	0.0	1.5	1	0	0	1	1	1	1	BRCA1	C	Terminus	(BRCT)	domain
HHH	PF00633.23	gi|529078790|ref|YP_008377793.1|	-	1.1e-07	31.4	0.0	3.8e-06	26.5	0.0	3.3	3	0	0	3	3	3	1	Helix-hairpin-helix	motif
DNA_ligase_ZBD	PF03119.16	gi|529078790|ref|YP_008377793.1|	-	4.5e-05	23.4	3.9	0.00012	22.0	3.9	1.8	1	0	0	1	1	1	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
PTCB-BRCT	PF12738.7	gi|529078790|ref|YP_008377793.1|	-	0.01	15.8	0.0	0.021	14.7	0.0	1.6	1	0	0	1	1	1	0	twin	BRCT	domain
TetR_C_6	PF13977.6	gi|529078790|ref|YP_008377793.1|	-	0.015	15.5	0.2	0.015	15.5	0.2	3.0	4	0	0	4	4	4	0	BetI-type	transcriptional	repressor,	C-terminal
IPPT	PF01715.17	gi|529078790|ref|YP_008377793.1|	-	0.047	13.5	0.0	0.16	11.7	0.0	1.8	2	0	0	2	2	2	0	IPP	transferase
ParE_toxin	PF05016.15	gi|529078790|ref|YP_008377793.1|	-	0.049	14.3	0.2	0.86	10.3	0.1	2.8	3	0	0	3	3	2	0	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
HHH_8	PF14716.6	gi|529078790|ref|YP_008377793.1|	-	0.13	12.7	0.2	7.2	7.1	0.0	3.6	3	1	0	3	3	3	0	Helix-hairpin-helix	domain
Pirin	PF02678.16	gi|529078791|ref|YP_008377794.1|	-	6.6e-15	55.0	0.4	1.7e-13	50.5	0.1	2.2	2	0	0	2	2	2	1	Pirin
Pirin_C_2	PF17954.1	gi|529078791|ref|YP_008377794.1|	-	1.2e-06	28.6	0.0	1.7e-06	28.1	0.0	1.3	1	0	0	1	1	1	1	Quercetinase	C-terminal	cupin	domain
Pirin_C	PF05726.13	gi|529078791|ref|YP_008377794.1|	-	3.4e-05	24.2	0.0	9.7e-05	22.7	0.0	1.7	2	0	0	2	2	2	1	Pirin	C-terminal	cupin	domain
Cupin_2	PF07883.11	gi|529078791|ref|YP_008377794.1|	-	0.013	15.1	0.2	1.4	8.7	0.0	2.6	2	1	0	2	2	2	0	Cupin	domain
ABC2_membrane_2	PF12679.7	gi|529078792|ref|YP_008377795.1|	-	7.5e-31	107.5	15.3	6.8e-29	101.0	15.3	2.0	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|529078792|ref|YP_008377795.1|	-	8.4e-06	25.3	17.4	1.8e-05	24.3	17.4	1.6	1	1	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_5	PF13346.6	gi|529078792|ref|YP_008377795.1|	-	3.8e-05	23.3	3.0	6.7e-05	22.5	3.0	1.4	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|529078792|ref|YP_008377795.1|	-	0.0015	17.7	16.9	0.0015	17.7	16.9	1.4	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|529078793|ref|YP_008377796.1|	-	2.1e-26	93.0	0.0	3.7e-26	92.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529078793|ref|YP_008377796.1|	-	2.8e-12	47.1	0.0	7.5e-07	29.2	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|529078793|ref|YP_008377796.1|	-	0.00054	20.6	0.0	0.0015	19.2	0.0	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4162)
AAA_30	PF13604.6	gi|529078793|ref|YP_008377796.1|	-	0.0023	17.7	0.2	0.0055	16.5	0.2	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|529078793|ref|YP_008377796.1|	-	0.0048	16.6	0.0	0.0092	15.7	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|529078793|ref|YP_008377796.1|	-	0.0051	17.3	0.1	0.0077	16.7	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
MeaB	PF03308.16	gi|529078793|ref|YP_008377796.1|	-	0.015	14.2	0.3	0.04	12.9	0.1	1.7	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
IstB_IS21	PF01695.17	gi|529078793|ref|YP_008377796.1|	-	0.034	13.9	0.0	1.8	8.3	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
RsgA_GTPase	PF03193.16	gi|529078793|ref|YP_008377796.1|	-	0.14	12.1	0.0	0.21	11.5	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_27	PF13514.6	gi|529078793|ref|YP_008377796.1|	-	0.14	11.7	0.1	0.59	9.7	0.0	2.0	3	0	0	3	3	3	0	AAA	domain
ABC2_membrane_2	PF12679.7	gi|529078794|ref|YP_008377797.1|	-	1.3e-44	152.7	22.1	2.1e-44	152.0	22.1	1.3	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|529078794|ref|YP_008377797.1|	-	7.7e-09	35.1	25.9	7.7e-09	35.1	25.9	1.6	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|529078794|ref|YP_008377797.1|	-	8.2e-08	32.4	14.0	8.2e-08	32.4	14.0	1.7	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|529078794|ref|YP_008377797.1|	-	1.6e-06	27.9	18.4	6.9e-06	25.8	18.3	1.9	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|529078794|ref|YP_008377797.1|	-	0.00068	19.1	18.6	0.00068	19.1	18.6	1.6	1	1	0	1	1	1	1	ABC-2	type	transporter
OST3_OST6	PF04756.13	gi|529078794|ref|YP_008377797.1|	-	0.11	11.8	5.5	0.41	10.0	5.3	1.9	1	1	0	1	1	1	0	OST3	/	OST6	family,	transporter	family
ABC_tran	PF00005.27	gi|529078795|ref|YP_008377798.1|	-	4.4e-29	101.7	0.0	7.4e-29	101.0	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529078795|ref|YP_008377798.1|	-	1.9e-14	54.2	0.2	7e-10	39.2	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|529078795|ref|YP_008377798.1|	-	9.6e-11	42.3	0.0	6e-10	39.7	0.0	2.3	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF4162)
AAA_29	PF13555.6	gi|529078795|ref|YP_008377798.1|	-	0.013	15.2	0.0	0.026	14.3	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|529078795|ref|YP_008377798.1|	-	0.015	15.0	0.0	0.04	13.6	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|529078795|ref|YP_008377798.1|	-	0.018	15.5	0.1	0.031	14.8	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
SMC_N	PF02463.19	gi|529078795|ref|YP_008377798.1|	-	0.021	14.3	0.1	3.2	7.1	0.0	2.2	1	1	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
IstB_IS21	PF01695.17	gi|529078795|ref|YP_008377798.1|	-	0.057	13.2	0.0	1.4	8.6	0.0	2.3	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
RsgA_GTPase	PF03193.16	gi|529078795|ref|YP_008377798.1|	-	0.093	12.6	0.0	0.2	11.5	0.0	1.6	1	0	0	1	1	1	0	RsgA	GTPase
AAA_7	PF12775.7	gi|529078795|ref|YP_008377798.1|	-	0.21	11.1	0.0	0.33	10.4	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
Flg_hook	PF02120.16	gi|529078796|ref|YP_008377799.1|	-	0.15	11.9	0.1	0.77	9.7	0.0	1.8	2	0	0	2	2	2	0	Flagellar	hook-length	control	protein	FliK
ABC_tran_2	PF16949.5	gi|529078799|ref|YP_008377802.1|	-	0.17	10.7	3.6	0.22	10.3	3.6	1.2	1	0	0	1	1	1	0	Putative	ATP-binding	cassette
UvrC_HhH_N	PF08459.11	gi|529078800|ref|YP_008377803.1|	-	5.5e-40	136.8	0.0	8.6e-40	136.2	0.0	1.3	1	0	0	1	1	1	1	UvrC	Helix-hairpin-helix	N-terminal
HHH_5	PF14520.6	gi|529078800|ref|YP_008377803.1|	-	2.2e-10	41.0	0.0	5.3e-10	39.7	0.0	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
HHH	PF00633.23	gi|529078800|ref|YP_008377803.1|	-	2.8e-09	36.4	0.4	3.5e-06	26.6	0.1	2.7	2	0	0	2	2	2	2	Helix-hairpin-helix	motif
GIY-YIG	PF01541.24	gi|529078800|ref|YP_008377803.1|	-	6.5e-07	29.5	0.0	1.1e-06	28.8	0.0	1.4	1	0	0	1	1	1	1	GIY-YIG	catalytic	domain
UVR	PF02151.19	gi|529078800|ref|YP_008377803.1|	-	1.8e-06	27.5	1.0	5.9e-06	25.9	1.0	1.9	1	0	0	1	1	1	1	UvrB/uvrC	motif
HHH_2	PF12826.7	gi|529078800|ref|YP_008377803.1|	-	4.7e-06	26.6	0.0	1e-05	25.5	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
IMS_HHH	PF11798.8	gi|529078800|ref|YP_008377803.1|	-	0.0034	17.6	0.0	4.2	7.9	0.0	2.6	2	0	0	2	2	2	2	IMS	family	HHH	motif
HHH_8	PF14716.6	gi|529078800|ref|YP_008377803.1|	-	0.0049	17.2	0.0	3.5	8.1	0.0	2.7	2	0	0	2	2	2	2	Helix-hairpin-helix	domain
HHH_3	PF12836.7	gi|529078800|ref|YP_008377803.1|	-	0.032	14.5	0.0	0.35	11.1	0.0	2.3	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
DUF2761	PF10959.8	gi|529078800|ref|YP_008377803.1|	-	0.055	13.5	0.1	0.13	12.3	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2761)
Cdd1	PF11731.8	gi|529078800|ref|YP_008377803.1|	-	0.16	12.2	0.0	7.2	6.9	0.0	2.4	2	0	0	2	2	2	0	Pathogenicity	locus
SelR	PF01641.18	gi|529078801|ref|YP_008377804.1|	-	2.2e-49	166.5	0.0	2.5e-49	166.4	0.0	1.0	1	0	0	1	1	1	1	SelR	domain
Yippee-Mis18	PF03226.14	gi|529078801|ref|YP_008377804.1|	-	0.00015	22.0	0.0	0.00022	21.4	0.0	1.3	1	0	0	1	1	1	1	Yippee	zinc-binding/DNA-binding	/Mis18,	centromere	assembly
TF_Zn_Ribbon	PF08271.12	gi|529078801|ref|YP_008377804.1|	-	0.041	13.4	6.3	2.5	7.7	0.1	3.1	2	1	0	2	2	2	0	TFIIB	zinc-binding
COX5B	PF01215.19	gi|529078801|ref|YP_008377804.1|	-	0.07	12.8	0.1	2.6	7.8	0.0	2.1	1	1	0	2	2	2	0	Cytochrome	c	oxidase	subunit	Vb
HECT_2	PF09814.9	gi|529078801|ref|YP_008377804.1|	-	0.23	10.3	0.0	12	4.6	0.0	2.0	1	1	1	2	2	2	0	HECT-like	Ubiquitin-conjugating	enzyme	(E2)-binding
MAF_flag10	PF01973.18	gi|529078803|ref|YP_008377806.1|	-	4.6e-19	68.7	0.0	6.5e-19	68.3	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF115
Pterin_bind	PF00809.22	gi|529078804|ref|YP_008377807.1|	-	2.6e-41	141.9	0.0	3.1e-41	141.7	0.0	1.1	1	0	0	1	1	1	1	Pterin	binding	enzyme
VWA	PF00092.28	gi|529078805|ref|YP_008377808.1|	-	3e-09	37.4	0.1	6.8e-09	36.2	0.0	1.7	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.6	gi|529078805|ref|YP_008377808.1|	-	0.00038	20.4	0.0	0.00068	19.6	0.0	1.4	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
Binary_toxB	PF03495.14	gi|529078805|ref|YP_008377808.1|	-	0.052	13.8	1.4	0.45	10.7	1.4	2.3	1	1	0	1	1	1	0	Clostridial	binary	toxin	B/anthrax	toxin	PA	Ca-binding	domain
VCBS	PF13517.6	gi|529078805|ref|YP_008377808.1|	-	0.71	10.5	3.4	12	6.5	0.1	3.4	3	1	1	4	4	4	0	Repeat	domain	in	Vibrio,	Colwellia,	Bradyrhizobium	and	Shewanella
Imm75	PF15660.6	gi|529078806|ref|YP_008377809.1|	-	0.11	12.8	0.0	0.13	12.6	0.0	1.1	1	0	0	1	1	1	0	Putative	Immunity	protein	75
DDE_Tnp_1	PF01609.21	gi|529078808|ref|YP_008377811.1|	-	6.3e-29	101.2	0.0	8.2e-29	100.8	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.12	gi|529078808|ref|YP_008377811.1|	-	0.01	15.1	0.0	0.014	14.6	0.0	1.1	1	0	0	1	1	1	0	Archaeal	putative	transposase	ISC1217
Rop-like	PF05082.13	gi|529078808|ref|YP_008377811.1|	-	0.07	13.0	0.7	2.9	7.8	0.0	2.7	3	0	0	3	3	3	0	Rop-like
DDE_Tnp_1_4	PF13701.6	gi|529078808|ref|YP_008377811.1|	-	0.12	10.6	0.0	0.26	9.5	0.0	1.5	1	1	1	2	2	2	0	Transposase	DDE	domain	group	1
SpoU_methylase	PF00588.19	gi|529078811|ref|YP_008377814.1|	-	1.2e-29	103.2	0.0	1.7e-29	102.8	0.0	1.2	1	0	0	1	1	1	1	SpoU	rRNA	Methylase	family
Methyltrn_RNA_4	PF09936.9	gi|529078811|ref|YP_008377814.1|	-	0.0099	15.7	0.0	0.17	11.7	0.0	2.3	2	1	0	2	2	2	1	SAM-dependent	RNA	methyltransferase
YdjM	PF04307.14	gi|529078812|ref|YP_008377815.1|	-	0.00064	19.1	5.7	0.00083	18.7	5.7	1.1	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
GatB_N	PF02934.15	gi|529078813|ref|YP_008377816.1|	-	3.6e-66	223.4	0.0	4.8e-66	222.9	0.0	1.2	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.18	gi|529078813|ref|YP_008377816.1|	-	1.1e-20	74.1	0.1	2.3e-20	73.0	0.0	1.6	2	0	0	2	2	2	1	GatB	domain
GAD	PF02938.14	gi|529078813|ref|YP_008377816.1|	-	6.9e-12	45.5	0.0	2e-11	44.0	0.0	1.9	1	1	0	1	1	1	1	GAD	domain
YqeY	PF09424.10	gi|529078813|ref|YP_008377816.1|	-	0.0083	16.2	0.3	0.017	15.2	0.3	1.5	1	0	0	1	1	1	1	Yqey-like	protein
Lyase_1	PF00206.20	gi|529078816|ref|YP_008377819.1|	-	6.1e-109	364.2	0.0	8.9e-109	363.6	0.0	1.2	1	0	0	1	1	1	1	Lyase
FumaraseC_C	PF10415.9	gi|529078816|ref|YP_008377819.1|	-	9.8e-25	86.7	5.6	3.9e-24	84.8	0.5	3.0	3	0	0	3	3	3	1	Fumarase	C	C-terminus
ADSL_C	PF10397.9	gi|529078816|ref|YP_008377819.1|	-	3.2	8.4	5.4	1.6	9.3	0.3	3.0	3	0	0	3	3	3	0	Adenylosuccinate	lyase	C-terminus
Mitofilin	PF09731.9	gi|529078817|ref|YP_008377820.1|	-	0.26	10.1	9.5	0.34	9.7	9.5	1.1	1	0	0	1	1	1	0	Mitochondrial	inner	membrane	protein
Herpes_DNAp_acc	PF04929.12	gi|529078817|ref|YP_008377820.1|	-	1.1	8.2	15.2	1.7	7.5	15.2	1.2	1	0	0	1	1	1	0	Herpes	DNA	replication	accessory	factor
Presenilin	PF01080.17	gi|529078817|ref|YP_008377820.1|	-	4	6.1	5.7	5.4	5.7	5.7	1.2	1	0	0	1	1	1	0	Presenilin
TrmB	PF01978.19	gi|529078818|ref|YP_008377821.1|	-	0.00031	20.6	0.2	0.0032	17.3	0.1	2.4	3	0	0	3	3	3	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_7	PF02796.15	gi|529078818|ref|YP_008377821.1|	-	0.0039	17.2	0.1	0.13	12.4	0.1	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	resolvase
HTH_IclR	PF09339.10	gi|529078818|ref|YP_008377821.1|	-	0.0066	16.2	0.0	0.014	15.2	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.6	gi|529078818|ref|YP_008377821.1|	-	0.051	13.0	0.0	7.9	6.0	0.0	2.8	3	0	0	3	3	3	0	Helix-turn-helix	domain	of	transposase	family	ISL3
OrfB_Zn_ribbon	PF07282.11	gi|529078820|ref|YP_008377823.1|	-	2.1e-22	78.8	0.4	3.4e-22	78.1	0.4	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
RuvC_1	PF18516.1	gi|529078820|ref|YP_008377823.1|	-	0.14	11.3	0.0	4.6	6.3	0.0	2.3	2	1	0	2	2	2	0	RuvC	nuclease	domain
DUF1722	PF08349.11	gi|529078820|ref|YP_008377823.1|	-	0.21	11.8	0.3	2.4	8.5	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1722)
Zn-ribbon_8	PF09723.10	gi|529078823|ref|YP_008377826.1|	-	0.0056	16.8	3.2	0.011	15.9	3.2	1.4	1	0	0	1	1	1	1	Zinc	ribbon	domain
HTH_11	PF08279.12	gi|529078823|ref|YP_008377826.1|	-	0.027	14.4	0.2	0.04	13.9	0.2	1.3	1	0	0	1	1	1	0	HTH	domain
HTH_40	PF14493.6	gi|529078823|ref|YP_008377826.1|	-	0.029	14.8	0.0	0.035	14.6	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
zf-trcl	PF13451.6	gi|529078823|ref|YP_008377826.1|	-	0.046	13.6	2.3	0.23	11.4	0.3	2.1	2	0	0	2	2	2	0	Probable	zinc-ribbon	domain
DUF4503	PF14951.6	gi|529078823|ref|YP_008377826.1|	-	0.056	11.9	0.3	0.054	12.0	0.2	1.2	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4503)
HTH_20	PF12840.7	gi|529078823|ref|YP_008377826.1|	-	0.069	13.2	0.4	0.11	12.5	0.4	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.6	gi|529078823|ref|YP_008377826.1|	-	0.072	12.5	0.5	0.1	12.1	0.5	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HypA	PF01155.19	gi|529078823|ref|YP_008377826.1|	-	0.072	13.1	0.7	0.11	12.6	0.7	1.4	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
PhnA_Zn_Ribbon	PF08274.12	gi|529078823|ref|YP_008377826.1|	-	0.093	12.7	4.1	1.2	9.2	1.2	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
HNH	PF01844.23	gi|529078823|ref|YP_008377826.1|	-	0.18	12.0	6.5	0.52	10.5	0.9	2.5	1	1	2	3	3	3	0	HNH	endonuclease
Rubredoxin_2	PF18073.1	gi|529078823|ref|YP_008377826.1|	-	7.6	6.4	7.0	23	4.8	2.0	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
PTH2	PF01981.16	gi|529078824|ref|YP_008377827.1|	-	6e-39	133.0	0.1	6.6e-39	132.8	0.1	1.0	1	0	0	1	1	1	1	Peptidyl-tRNA	hydrolase	PTH2
Proteasome	PF00227.26	gi|529078825|ref|YP_008377828.1|	-	3.6e-55	186.4	0.0	4.4e-55	186.1	0.0	1.1	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome_A_N	PF10584.9	gi|529078825|ref|YP_008377828.1|	-	7.4e-14	51.1	0.1	1.5e-13	50.2	0.1	1.5	1	0	0	1	1	1	1	Proteasome	subunit	A	N-terminal	signature
Proteasome	PF00227.26	gi|529078826|ref|YP_008377829.1|	-	2.6e-42	144.5	1.1	3.1e-42	144.2	1.1	1.0	1	0	0	1	1	1	1	Proteasome	subunit
TruD	PF01142.18	gi|529078827|ref|YP_008377830.1|	-	7.5e-162	538.9	0.0	8.5e-162	538.7	0.0	1.0	1	0	0	1	1	1	1	tRNA	pseudouridine	synthase	D	(TruD)
MFS_1	PF07690.16	gi|529078829|ref|YP_008377832.1|	-	6.9e-15	54.8	58.1	1.3e-10	40.8	35.7	2.3	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DUF2103	PF09876.9	gi|529078830|ref|YP_008377833.1|	-	2.9e-39	133.0	1.2	4e-39	132.5	0.4	1.7	2	0	0	2	2	2	1	Predicted	metal-binding	protein	(DUF2103)
acVLRF1	PF18859.1	gi|529078830|ref|YP_008377833.1|	-	0.007	16.6	1.1	0.007	16.6	1.1	2.6	3	1	0	3	3	3	1	Actinobacteria/chloroflexi	VLRF1	release	factor
Ribosomal_L37ae	PF01780.19	gi|529078831|ref|YP_008377834.1|	-	1.4e-30	105.2	0.8	1.5e-30	105.1	0.8	1.0	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
Zn_Tnp_IS1595	PF12760.7	gi|529078831|ref|YP_008377834.1|	-	0.00075	19.4	1.1	0.0013	18.6	1.1	1.4	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|529078831|ref|YP_008377834.1|	-	0.0058	16.7	1.1	0.061	13.4	0.2	2.2	2	0	0	2	2	2	1	Zinc	ribbon	domain
zf-H2C2_2	PF13465.6	gi|529078831|ref|YP_008377834.1|	-	0.0061	16.9	0.6	2.3	8.8	0.1	2.2	2	0	0	2	2	2	2	Zinc-finger	double	domain
OrfB_Zn_ribbon	PF07282.11	gi|529078831|ref|YP_008377834.1|	-	0.014	15.3	0.9	0.022	14.7	0.9	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-C2H2	PF00096.26	gi|529078831|ref|YP_008377834.1|	-	0.047	14.2	3.0	1.8	9.2	0.3	2.3	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
Rubredoxin	PF00301.20	gi|529078831|ref|YP_008377834.1|	-	0.051	13.6	2.7	1.9	8.6	0.1	2.2	2	0	0	2	2	2	0	Rubredoxin
HalOD2	PF18547.1	gi|529078831|ref|YP_008377834.1|	-	0.093	12.6	6.0	1.6	8.7	6.0	2.2	1	1	0	1	1	1	0	Halobacterial	output	domain	2
zf-RING_7	PF02591.15	gi|529078831|ref|YP_008377834.1|	-	0.13	12.4	0.6	0.13	12.4	0.6	2.1	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
zf-BED	PF02892.15	gi|529078831|ref|YP_008377834.1|	-	0.17	11.9	0.8	0.2	11.7	0.2	1.4	1	1	0	1	1	1	0	BED	zinc	finger
zf-CHCC	PF10276.9	gi|529078831|ref|YP_008377834.1|	-	0.2	11.8	4.0	0.91	9.6	1.0	2.3	2	0	0	2	2	2	0	Zinc-finger	domain
zf-C2H2_4	PF13894.6	gi|529078831|ref|YP_008377834.1|	-	0.48	11.4	2.8	17	6.5	0.4	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zinc_ribbon_2	PF13240.6	gi|529078831|ref|YP_008377834.1|	-	2.7	7.8	7.8	3.9	7.3	0.6	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
UPF0547	PF10571.9	gi|529078831|ref|YP_008377834.1|	-	5.9	7.1	10.0	12	6.1	1.2	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DNA_RNApol_7kD	PF03604.13	gi|529078832|ref|YP_008377835.1|	-	1.6e-10	40.4	6.8	2e-10	40.1	6.8	1.1	1	0	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-ribbon_3	PF13248.6	gi|529078832|ref|YP_008377835.1|	-	4.1e-05	22.8	0.2	0.0044	16.4	0.0	2.1	2	0	0	2	2	2	1	zinc-ribbon	domain
HypA	PF01155.19	gi|529078832|ref|YP_008377835.1|	-	0.00059	19.8	0.5	0.00063	19.7	0.5	1.2	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
A2L_zn_ribbon	PF08792.10	gi|529078832|ref|YP_008377835.1|	-	0.00071	19.2	3.1	0.023	14.4	1.7	2.0	1	1	1	2	2	2	2	A2L	zinc	ribbon	domain
zf_UBZ	PF18439.1	gi|529078832|ref|YP_008377835.1|	-	0.0013	18.2	1.6	0.32	10.6	0.3	2.1	1	1	1	2	2	2	2	Ubiquitin-Binding	Zinc	Finger
Zn_Tnp_IS1595	PF12760.7	gi|529078832|ref|YP_008377835.1|	-	0.0031	17.5	4.4	0.077	13.0	0.1	2.1	2	0	0	2	2	2	1	Transposase	zinc-ribbon	domain
zf-CHCC	PF10276.9	gi|529078832|ref|YP_008377835.1|	-	0.0035	17.4	0.5	0.0061	16.6	0.5	1.4	1	0	0	1	1	1	1	Zinc-finger	domain
YacG	PF03884.14	gi|529078832|ref|YP_008377835.1|	-	0.0064	16.2	0.2	0.33	10.7	0.0	2.0	2	0	0	2	2	2	1	DNA	gyrase	inhibitor	YacG
DZR	PF12773.7	gi|529078832|ref|YP_008377835.1|	-	0.0089	16.0	0.9	0.017	15.2	0.9	1.5	1	1	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|529078832|ref|YP_008377835.1|	-	0.0093	15.7	2.3	0.17	11.6	0.3	2.1	2	0	0	2	2	2	1	zinc-ribbon	domain
Lar_restr_allev	PF14354.6	gi|529078832|ref|YP_008377835.1|	-	0.012	15.9	0.6	0.067	13.6	0.0	1.9	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
Sgf11	PF08209.11	gi|529078832|ref|YP_008377835.1|	-	0.016	14.7	1.8	1	9.0	0.2	2.3	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
RNHCP	PF12647.7	gi|529078832|ref|YP_008377835.1|	-	0.017	15.1	0.3	0.018	15.0	0.3	1.1	1	0	0	1	1	1	0	RNHCP	domain
Cys_rich_CPXG	PF14255.6	gi|529078832|ref|YP_008377835.1|	-	0.02	14.8	0.2	0.093	12.7	0.0	2.0	2	0	0	2	2	2	0	Cysteine-rich	CPXCG
zinc-ribbons_6	PF07191.12	gi|529078832|ref|YP_008377835.1|	-	0.033	14.2	0.4	0.04	13.9	0.4	1.3	1	0	0	1	1	1	0	zinc-ribbons
zf-ISL3	PF14690.6	gi|529078832|ref|YP_008377835.1|	-	0.034	14.8	2.4	0.1	13.3	0.2	2.0	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Anti-TRAP	PF15777.5	gi|529078832|ref|YP_008377835.1|	-	0.035	14.0	0.1	0.039	13.9	0.1	1.2	1	0	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
Zn-ribbon_8	PF09723.10	gi|529078832|ref|YP_008377835.1|	-	0.04	14.0	3.9	0.078	13.1	3.9	1.5	1	1	0	1	1	1	0	Zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|529078832|ref|YP_008377835.1|	-	0.048	13.2	3.7	0.1	12.1	3.7	1.5	1	1	1	2	2	2	0	TFIIB	zinc-binding
DUF951	PF06107.11	gi|529078832|ref|YP_008377835.1|	-	0.06	13.3	0.4	2.7	8.0	0.0	2.1	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF951)
Spt4	PF06093.13	gi|529078832|ref|YP_008377835.1|	-	0.07	13.2	0.2	0.076	13.1	0.2	1.0	1	0	0	1	1	1	0	Spt4/RpoE2	zinc	finger
DUF3268	PF11672.8	gi|529078832|ref|YP_008377835.1|	-	0.084	13.2	1.2	0.35	11.2	0.1	1.9	1	1	1	2	2	2	0	zinc-finger-containing	domain
OrfB_Zn_ribbon	PF07282.11	gi|529078832|ref|YP_008377835.1|	-	0.22	11.4	3.1	0.36	10.8	3.0	1.6	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zinc_ribbon_4	PF13717.6	gi|529078832|ref|YP_008377835.1|	-	0.49	10.4	5.9	18	5.4	5.9	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
Pcc1	PF09341.10	gi|529078833|ref|YP_008377836.1|	-	7.6e-08	32.4	0.2	7.9e-08	32.3	0.2	1.0	1	0	0	1	1	1	1	Transcription	factor	Pcc1
DUF5518	PF17647.1	gi|529078834|ref|YP_008377837.1|	-	9.2	6.4	38.2	0.64	10.2	28.0	2.2	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5518)
Prefoldin_2	PF01920.20	gi|529078835|ref|YP_008377838.1|	-	1.4e-25	89.3	18.6	1.5e-25	89.2	18.6	1.0	1	0	0	1	1	1	1	Prefoldin	subunit
DUF5082	PF16888.5	gi|529078835|ref|YP_008377838.1|	-	0.00031	21.0	10.0	0.00041	20.6	10.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5082)
XhlA	PF10779.9	gi|529078835|ref|YP_008377838.1|	-	0.0014	18.7	10.2	0.0033	17.6	1.0	2.4	2	0	0	2	2	2	1	Haemolysin	XhlA
DUF3584	PF12128.8	gi|529078835|ref|YP_008377838.1|	-	0.0055	14.3	8.4	0.0069	14.0	8.4	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
TraF_2	PF13729.6	gi|529078835|ref|YP_008377838.1|	-	0.017	14.5	0.2	0.017	14.5	0.2	2.0	1	1	1	2	2	2	0	F	plasmid	transfer	operon,	TraF,	protein
Questin_oxidase	PF14027.6	gi|529078835|ref|YP_008377838.1|	-	0.032	13.8	1.5	0.039	13.5	1.5	1.1	1	0	0	1	1	1	0	Questin	oxidase-like
DUF4988	PF16378.5	gi|529078835|ref|YP_008377838.1|	-	0.068	12.8	0.5	0.068	12.8	0.5	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function
IFT57	PF10498.9	gi|529078835|ref|YP_008377838.1|	-	0.07	12.1	10.7	0.45	9.4	1.2	2.0	2	0	0	2	2	2	0	Intra-flagellar	transport	protein	57
DUF724	PF05266.14	gi|529078835|ref|YP_008377838.1|	-	0.077	12.8	10.9	0.098	12.5	10.9	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
DHR10	PF18595.1	gi|529078835|ref|YP_008377838.1|	-	0.083	12.9	19.2	0.54	10.3	3.9	2.1	2	0	0	2	2	2	0	Designed	helical	repeat	protein	10	domain
Tropomyosin_1	PF12718.7	gi|529078835|ref|YP_008377838.1|	-	0.1	12.8	24.7	0.62	10.2	24.7	1.9	1	1	0	1	1	1	0	Tropomyosin	like
Prefoldin	PF02996.17	gi|529078835|ref|YP_008377838.1|	-	0.11	12.4	17.5	14	5.7	17.5	2.5	1	1	0	1	1	1	0	Prefoldin	subunit
Exonuc_VII_L	PF02601.15	gi|529078835|ref|YP_008377838.1|	-	0.15	11.6	4.2	0.2	11.2	4.2	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
Laminin_II	PF06009.12	gi|529078835|ref|YP_008377838.1|	-	0.18	11.8	10.2	0.41	10.7	10.2	1.6	1	1	0	1	1	1	0	Laminin	Domain	II
Seryl_tRNA_N	PF02403.22	gi|529078835|ref|YP_008377838.1|	-	0.18	12.0	11.5	0.41	10.9	1.0	2.1	2	0	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
Baculo_PEP_C	PF04513.12	gi|529078835|ref|YP_008377838.1|	-	0.31	11.1	10.5	0.97	9.5	10.5	1.7	1	1	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
CLZ	PF16526.5	gi|529078835|ref|YP_008377838.1|	-	0.33	11.3	13.1	0.11	12.9	2.7	2.3	2	0	0	2	2	2	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
TPR_MLP1_2	PF07926.12	gi|529078835|ref|YP_008377838.1|	-	0.42	10.7	23.8	0.23	11.5	4.8	2.0	2	0	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
PAF-AH_p_II	PF03403.13	gi|529078835|ref|YP_008377838.1|	-	0.45	9.0	2.7	0.36	9.3	1.8	1.3	1	1	0	1	1	1	0	Platelet-activating	factor	acetylhydrolase,	isoform	II
Sigma70_ner	PF04546.13	gi|529078835|ref|YP_008377838.1|	-	0.61	9.9	17.2	0.12	12.3	3.5	2.0	1	1	1	2	2	2	0	Sigma-70,	non-essential	region
DUF4446	PF14584.6	gi|529078835|ref|YP_008377838.1|	-	0.63	10.0	6.8	1	9.4	0.4	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4446)
DUF4140	PF13600.6	gi|529078835|ref|YP_008377838.1|	-	0.75	10.3	14.6	0.43	11.0	1.6	2.1	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
DUF4200	PF13863.6	gi|529078835|ref|YP_008377838.1|	-	0.88	10.0	17.4	1.1	9.7	5.4	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4200)
ParE_toxin	PF05016.15	gi|529078835|ref|YP_008377838.1|	-	0.93	10.1	4.4	19	5.9	1.8	2.2	1	1	1	2	2	2	0	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
Spc24	PF08286.11	gi|529078835|ref|YP_008377838.1|	-	0.94	9.8	18.6	0.6	10.4	4.0	2.1	1	1	1	2	2	2	0	Spc24	subunit	of	Ndc80
Sec34	PF04136.15	gi|529078835|ref|YP_008377838.1|	-	1	9.3	13.7	0.74	9.7	1.5	2.1	1	1	1	2	2	2	0	Sec34-like	family
DUF4407	PF14362.6	gi|529078835|ref|YP_008377838.1|	-	1	8.7	11.1	1.5	8.1	11.1	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
WXG100	PF06013.12	gi|529078835|ref|YP_008377838.1|	-	1.1	9.5	12.7	12	6.2	7.0	2.6	2	1	0	2	2	2	0	Proteins	of	100	residues	with	WXG
HemX	PF04375.14	gi|529078835|ref|YP_008377838.1|	-	1.2	8.4	19.4	9.6	5.4	19.4	1.9	1	1	0	1	1	1	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
FlaC_arch	PF05377.11	gi|529078835|ref|YP_008377838.1|	-	1.3	9.5	12.9	0.084	13.3	5.1	2.4	2	1	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
DASH_Dad2	PF08654.10	gi|529078835|ref|YP_008377838.1|	-	1.5	9.3	11.9	3.6	8.1	5.3	2.3	2	1	0	2	2	2	0	DASH	complex	subunit	Dad2
bZIP_1	PF00170.21	gi|529078835|ref|YP_008377838.1|	-	1.6	8.9	13.3	0.18	11.9	2.3	2.5	2	1	0	2	2	2	0	bZIP	transcription	factor
DUF1664	PF07889.12	gi|529078835|ref|YP_008377838.1|	-	1.8	8.6	10.4	0.48	10.5	1.3	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Phage_GP20	PF06810.11	gi|529078835|ref|YP_008377838.1|	-	1.8	8.3	15.8	2.7	7.8	3.9	2.2	1	1	0	2	2	2	0	Phage	minor	structural	protein	GP20
Prominin	PF05478.11	gi|529078835|ref|YP_008377838.1|	-	1.9	6.3	6.0	2.5	6.0	6.0	1.1	1	0	0	1	1	1	0	Prominin
Bac_GDH	PF05088.12	gi|529078835|ref|YP_008377838.1|	-	2	5.8	6.1	2.3	5.6	6.1	1.0	1	0	0	1	1	1	0	Bacterial	NAD-glutamate	dehydrogenase
Fib_alpha	PF08702.10	gi|529078835|ref|YP_008377838.1|	-	2.6	8.2	11.2	21	5.3	11.3	1.9	1	1	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
DUF3450	PF11932.8	gi|529078835|ref|YP_008377838.1|	-	2.7	7.2	22.0	27	4.0	22.0	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
BLOC1_2	PF10046.9	gi|529078835|ref|YP_008377838.1|	-	2.9	8.3	14.0	1.3	9.4	1.8	2.2	1	1	1	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
ApoLp-III	PF07464.11	gi|529078835|ref|YP_008377838.1|	-	3.2	7.9	19.9	0.056	13.5	2.0	2.1	1	1	0	2	2	2	0	Apolipophorin-III	precursor	(apoLp-III)
FUSC	PF04632.12	gi|529078835|ref|YP_008377838.1|	-	4	5.8	5.0	5.9	5.3	5.0	1.3	1	1	0	1	1	1	0	Fusaric	acid	resistance	protein	family
ERM	PF00769.19	gi|529078835|ref|YP_008377838.1|	-	4.1	7.1	21.5	6.8	6.4	21.5	1.3	1	1	0	1	1	1	0	Ezrin/radixin/moesin	family
GCN5L1	PF06320.13	gi|529078835|ref|YP_008377838.1|	-	4.2	7.6	12.5	3.2	7.9	1.2	2.1	1	1	0	2	2	2	0	GCN5-like	protein	1	(GCN5L1)
Syntaxin-6_N	PF09177.11	gi|529078835|ref|YP_008377838.1|	-	4.2	8.0	12.5	51	4.5	12.5	2.1	1	1	0	1	1	1	0	Syntaxin	6,	N-terminal
ADIP	PF11559.8	gi|529078835|ref|YP_008377838.1|	-	4.2	7.4	15.3	2.1	8.4	2.4	2.0	2	0	0	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
COG2	PF06148.11	gi|529078835|ref|YP_008377838.1|	-	4.3	7.4	12.8	3	7.9	2.8	2.1	1	1	1	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
MatP_C	PF17414.2	gi|529078835|ref|YP_008377838.1|	-	4.3	7.6	8.9	0.36	11.1	1.6	2.3	2	0	0	2	2	2	0	MatP	C-terminal	ribbon-helix-helix	domain
Plasmid_RAQPRD	PF09686.10	gi|529078835|ref|YP_008377838.1|	-	4.5	7.5	9.4	11	6.3	0.1	2.5	2	1	0	2	2	2	0	Plasmid	protein	of	unknown	function	(Plasmid_RAQPRD)
DUF948	PF06103.11	gi|529078835|ref|YP_008377838.1|	-	4.8	7.5	8.8	5.5	7.3	0.4	2.3	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
T3SSipB	PF16535.5	gi|529078835|ref|YP_008377838.1|	-	5.1	7.6	12.8	4.2	7.8	7.3	2.0	1	1	1	2	2	2	0	Type	III	cell	invasion	protein	SipB
IL2	PF00715.17	gi|529078835|ref|YP_008377838.1|	-	5.1	7.0	7.4	17	5.3	7.4	1.7	1	1	0	1	1	1	0	Interleukin	2
Snapin_Pallidin	PF14712.6	gi|529078835|ref|YP_008377838.1|	-	5.3	7.5	14.7	5.8	7.4	2.3	2.2	2	0	0	2	2	2	0	Snapin/Pallidin
EzrA	PF06160.12	gi|529078835|ref|YP_008377838.1|	-	5.6	5.0	17.6	19	3.3	17.7	1.6	1	1	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
PCRF	PF03462.18	gi|529078835|ref|YP_008377838.1|	-	6	6.7	14.7	17	5.2	14.7	1.7	1	1	0	1	1	1	0	PCRF	domain
DUF2968	PF11180.8	gi|529078835|ref|YP_008377838.1|	-	6.3	6.4	16.7	8.9	5.9	9.8	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2968)
NPV_P10	PF05531.12	gi|529078835|ref|YP_008377838.1|	-	6.4	7.3	10.9	5.8	7.5	0.5	2.2	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
HlyD_2	PF12700.7	gi|529078835|ref|YP_008377838.1|	-	7.5	5.2	7.5	0.25	10.0	0.6	1.7	2	0	0	2	2	2	0	HlyD	family	secretion	protein
Spc7	PF08317.11	gi|529078835|ref|YP_008377838.1|	-	8.3	5.2	19.8	29	3.4	19.8	1.7	1	1	0	1	1	1	0	Spc7	kinetochore	protein
DUF787	PF05619.11	gi|529078835|ref|YP_008377838.1|	-	8.9	5.3	6.1	0.95	8.5	0.9	1.8	1	1	0	2	2	2	0	Borrelia	burgdorferi	protein	of	unknown	function	(DUF787)
KfrA_N	PF11740.8	gi|529078835|ref|YP_008377838.1|	-	9	7.0	20.0	9	7.0	2.8	2.2	2	0	0	2	2	2	0	Plasmid	replication	region	DNA-binding	N-term
DivIC	PF04977.15	gi|529078835|ref|YP_008377838.1|	-	9.5	6.1	17.0	2.1	8.1	3.0	2.2	2	0	0	2	2	2	0	Septum	formation	initiator
DUF3194	PF11419.8	gi|529078836|ref|YP_008377839.1|	-	1.1e-05	25.7	1.8	1.4e-05	25.4	1.8	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3194)
GTP_EFTU	PF00009.27	gi|529078838|ref|YP_008377841.1|	-	5.9e-32	110.8	0.0	2.5e-30	105.5	0.0	2.3	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D4	PF14578.6	gi|529078838|ref|YP_008377841.1|	-	2.8e-25	88.0	0.1	8.1e-25	86.6	0.1	1.9	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	4
IF-2	PF11987.8	gi|529078838|ref|YP_008377841.1|	-	1.6e-21	76.4	0.6	4.2e-21	75.0	0.6	1.7	1	0	0	1	1	1	1	Translation-initiation	factor	2
GTP_EFTU_D2	PF03144.25	gi|529078838|ref|YP_008377841.1|	-	1.2e-14	54.4	8.0	5.4e-10	39.5	0.8	3.1	2	1	0	2	2	2	2	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|529078838|ref|YP_008377841.1|	-	2e-08	34.3	0.0	5e-08	33.0	0.0	1.8	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
Dynamin_N	PF00350.23	gi|529078838|ref|YP_008377841.1|	-	0.0047	17.0	0.2	0.49	10.4	0.0	2.5	2	0	0	2	2	2	1	Dynamin	family
ATP_bind_1	PF03029.17	gi|529078838|ref|YP_008377841.1|	-	0.11	12.3	0.0	0.34	10.7	0.0	1.8	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
Roc	PF08477.13	gi|529078838|ref|YP_008377841.1|	-	0.21	11.8	0.0	0.81	9.9	0.0	2.0	2	1	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
MFS_1_like	PF12832.7	gi|529078839|ref|YP_008377842.1|	-	4.7e-37	127.8	21.3	1.2e-36	126.4	21.3	1.6	1	1	0	1	1	1	1	MFS_1	like	family
MFS_1	PF07690.16	gi|529078839|ref|YP_008377842.1|	-	7.7e-17	61.2	59.2	2.7e-10	39.7	33.0	2.3	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Nuc_H_symport	PF03825.16	gi|529078839|ref|YP_008377842.1|	-	3.6e-09	36.1	20.5	5.3e-09	35.5	20.5	1.1	1	0	0	1	1	1	1	Nucleoside	H+	symporter
LacY_symp	PF01306.19	gi|529078839|ref|YP_008377842.1|	-	0.077	11.8	17.8	0.012	14.4	12.7	2.1	2	1	0	2	2	2	0	LacY	proton/sugar	symporter
PRC	PF05239.16	gi|529078840|ref|YP_008377843.1|	-	4.5e-10	39.5	0.0	5e-10	39.3	0.0	1.1	1	0	0	1	1	1	1	PRC-barrel	domain
PIN_6	PF17146.4	gi|529078841|ref|YP_008377844.1|	-	2.8e-14	53.4	0.1	4.9e-14	52.6	0.1	1.3	1	0	0	1	1	1	1	PIN	domain	of	ribonuclease
Zn-ribbon_8	PF09723.10	gi|529078841|ref|YP_008377844.1|	-	0.0003	20.8	1.9	0.00081	19.5	1.9	1.7	1	0	0	1	1	1	1	Zinc	ribbon	domain
zinc-ribbons_6	PF07191.12	gi|529078841|ref|YP_008377844.1|	-	0.0018	18.2	0.4	0.0026	17.7	0.4	1.3	1	0	0	1	1	1	1	zinc-ribbons
zf-C3HC4_3	PF13920.6	gi|529078841|ref|YP_008377844.1|	-	0.0019	18.0	1.0	0.0028	17.5	1.0	1.2	1	0	0	1	1	1	1	Zinc	finger,	C3HC4	type	(RING	finger)
HypA	PF01155.19	gi|529078841|ref|YP_008377844.1|	-	0.0022	18.0	0.8	0.0031	17.5	0.8	1.4	1	1	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Rad50_zn_hook	PF04423.14	gi|529078841|ref|YP_008377844.1|	-	0.0029	17.4	2.8	0.039	13.8	1.4	3.1	3	1	1	4	4	3	1	Rad50	zinc	hook	motif
DZR	PF12773.7	gi|529078841|ref|YP_008377844.1|	-	0.0065	16.5	0.5	0.01	15.9	0.5	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-P11	PF03854.14	gi|529078841|ref|YP_008377844.1|	-	0.0073	15.9	0.0	0.012	15.3	0.0	1.2	1	0	0	1	1	1	1	P-11	zinc	finger
Prok-RING_4	PF14447.6	gi|529078841|ref|YP_008377844.1|	-	0.0074	16.1	0.9	0.048	13.5	2.3	1.6	2	0	0	2	2	2	1	Prokaryotic	RING	finger	family	4
DNA_ligase_ZBD	PF03119.16	gi|529078841|ref|YP_008377844.1|	-	0.0081	16.2	3.1	0.04	14.0	0.5	2.4	2	0	0	2	2	2	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Prok-RING_1	PF14446.6	gi|529078841|ref|YP_008377844.1|	-	0.0097	15.8	1.5	0.016	15.1	1.5	1.3	1	0	0	1	1	1	1	Prokaryotic	RING	finger	family	1
PIN_5	PF08745.11	gi|529078841|ref|YP_008377844.1|	-	0.012	15.1	0.5	0.018	14.5	0.3	1.5	1	1	1	2	2	2	0	PINc	domain	ribonuclease
zinc_ribbon_15	PF17032.5	gi|529078841|ref|YP_008377844.1|	-	0.014	16.1	0.2	0.021	15.6	0.2	1.3	1	0	0	1	1	1	0	zinc-ribbon	family
zf-C3HC4_2	PF13923.6	gi|529078841|ref|YP_008377844.1|	-	0.016	15.0	1.9	0.024	14.5	1.9	1.3	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
C1_2	PF03107.16	gi|529078841|ref|YP_008377844.1|	-	0.029	14.7	0.2	0.051	13.9	0.2	1.4	1	0	0	1	1	1	0	C1	domain
Ribosomal_L37e	PF01907.19	gi|529078841|ref|YP_008377844.1|	-	0.05	13.8	0.3	0.079	13.1	0.3	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L37e
zf-NADH-PPase	PF09297.11	gi|529078841|ref|YP_008377844.1|	-	0.07	12.8	2.1	6.5	6.5	0.1	2.5	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-RING_5	PF14634.6	gi|529078841|ref|YP_008377844.1|	-	0.074	13.0	1.9	0.11	12.5	1.9	1.3	1	0	0	1	1	1	0	zinc-RING	finger	domain
DUF4411	PF14367.6	gi|529078841|ref|YP_008377844.1|	-	0.083	12.8	0.1	0.27	11.1	0.1	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4411)
zf-ribbon_3	PF13248.6	gi|529078841|ref|YP_008377844.1|	-	0.099	12.1	0.4	0.099	12.1	0.4	1.6	2	0	0	2	2	1	0	zinc-ribbon	domain
NOB1_Zn_bind	PF08772.11	gi|529078841|ref|YP_008377844.1|	-	0.14	12.3	0.2	0.27	11.4	0.2	1.5	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-C2H2_4	PF13894.6	gi|529078841|ref|YP_008377844.1|	-	0.17	12.8	2.1	11	7.1	0.2	2.4	1	1	1	2	2	2	0	C2H2-type	zinc	finger
Nudix_N_2	PF14803.6	gi|529078841|ref|YP_008377844.1|	-	0.19	11.7	4.6	3.9	7.5	0.3	3.1	3	0	0	3	3	3	0	Nudix	N-terminal
zf-C2H2	PF00096.26	gi|529078841|ref|YP_008377844.1|	-	0.2	12.2	3.0	3.2	8.4	0.3	2.3	1	1	1	2	2	2	0	Zinc	finger,	C2H2	type
zinc_ribbon_2	PF13240.6	gi|529078841|ref|YP_008377844.1|	-	0.26	11.1	3.7	0.51	10.1	3.7	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-C2HC_2	PF13913.6	gi|529078841|ref|YP_008377844.1|	-	0.81	9.7	7.9	0.32	10.9	0.7	2.3	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
YmgB	PF10798.8	gi|529078842|ref|YP_008377845.1|	-	0.057	13.2	0.5	0.079	12.8	0.5	1.3	1	0	0	1	1	1	0	Biofilm	development	protein	YmgB/AriR
RHH_1	PF01402.21	gi|529078842|ref|YP_008377845.1|	-	0.075	13.0	0.3	0.11	12.4	0.3	1.4	1	1	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
CPBP	PF02517.16	gi|529078843|ref|YP_008377846.1|	-	1.5e-14	54.1	4.8	1.5e-14	54.1	4.8	2.0	2	1	0	2	2	2	1	CPBP	intramembrane	metalloprotease
ATP1G1_PLM_MAT8	PF02038.16	gi|529078843|ref|YP_008377846.1|	-	1.1	8.8	3.8	0.71	9.4	0.3	2.4	2	0	0	2	2	2	0	ATP1G1/PLM/MAT8	family
DUF3487	PF11990.8	gi|529078844|ref|YP_008377847.1|	-	0.15	11.9	6.0	0.13	12.2	4.1	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3487)
DUF4131	PF13567.6	gi|529078844|ref|YP_008377847.1|	-	4.4	6.9	7.1	39	3.9	7.1	2.1	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
CobD_Cbib	PF03186.13	gi|529078844|ref|YP_008377847.1|	-	5.7	6.1	8.6	3.8	6.6	0.1	2.3	2	1	0	2	2	2	0	CobD/Cbib	protein
DUF1180	PF06679.12	gi|529078844|ref|YP_008377847.1|	-	6.4	7.2	5.4	3.6	8.0	0.2	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1180)
IMPDH	PF00478.25	gi|529078846|ref|YP_008377849.1|	-	1.5e-110	369.4	3.3	1.9e-110	369.1	3.3	1.1	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
FMN_dh	PF01070.18	gi|529078846|ref|YP_008377849.1|	-	1.2e-09	37.7	9.2	2.3e-09	36.8	8.7	1.6	1	1	0	1	1	1	1	FMN-dependent	dehydrogenase
NMO	PF03060.15	gi|529078846|ref|YP_008377849.1|	-	3.3e-09	36.6	10.8	4e-07	29.7	8.2	2.2	1	1	1	2	2	2	2	Nitronate	monooxygenase
His_biosynth	PF00977.21	gi|529078846|ref|YP_008377849.1|	-	3.2e-05	23.5	2.8	0.03	13.8	0.1	2.8	2	1	1	3	3	3	2	Histidine	biosynthesis	protein
DHO_dh	PF01180.21	gi|529078846|ref|YP_008377849.1|	-	0.00017	20.9	0.7	0.00017	20.9	0.7	1.7	2	0	0	2	2	2	1	Dihydroorotate	dehydrogenase
Glu_synthase	PF01645.17	gi|529078846|ref|YP_008377849.1|	-	0.00045	19.5	0.8	0.00083	18.6	0.8	1.5	1	0	0	1	1	1	1	Conserved	region	in	glutamate	synthase
ThiG	PF05690.14	gi|529078846|ref|YP_008377849.1|	-	0.0049	16.2	1.5	0.0049	16.2	1.5	2.1	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
Dus	PF01207.17	gi|529078846|ref|YP_008377849.1|	-	0.0064	15.6	0.1	0.0064	15.6	0.1	1.8	2	0	0	2	2	2	1	Dihydrouridine	synthase	(Dus)
G3P_antiterm	PF04309.12	gi|529078846|ref|YP_008377849.1|	-	0.023	14.1	0.2	2.1	7.8	0.1	2.9	3	0	0	3	3	3	0	Glycerol-3-phosphate	responsive	antiterminator
TMP-TENI	PF02581.17	gi|529078846|ref|YP_008377849.1|	-	0.043	13.1	4.1	0.34	10.2	3.2	2.5	1	1	1	2	2	2	0	Thiamine	monophosphate	synthase
NanE	PF04131.14	gi|529078846|ref|YP_008377849.1|	-	0.11	11.7	3.2	6.4	5.9	0.1	3.1	1	1	2	3	3	3	0	Putative	N-acetylmannosamine-6-phosphate	epimerase
SecD_SecF	PF02355.16	gi|529078847|ref|YP_008377850.1|	-	3.7e-24	85.2	13.3	3.7e-24	85.2	13.3	1.4	2	0	0	2	2	2	1	Protein	export	membrane	protein
Sec_GG	PF07549.14	gi|529078847|ref|YP_008377850.1|	-	2.1e-06	27.0	0.0	6.3e-06	25.5	0.0	1.9	1	0	0	1	1	1	1	SecD/SecF	GG	Motif
Ig_C19orf38	PF17737.1	gi|529078847|ref|YP_008377850.1|	-	0.13	12.6	0.1	0.35	11.2	0.0	1.7	2	0	0	2	2	2	0	Ig	domain	in	C19orf38	(HIDE1)
MMPL	PF03176.15	gi|529078847|ref|YP_008377850.1|	-	0.17	10.7	21.8	0.078	11.9	18.6	1.8	2	0	0	2	2	2	0	MMPL	family
Patched	PF02460.18	gi|529078847|ref|YP_008377850.1|	-	1.1	7.3	14.9	1.7	6.6	14.9	1.2	1	0	0	1	1	1	0	Patched	family
ACR_tran	PF00873.19	gi|529078847|ref|YP_008377850.1|	-	1.5	6.3	20.5	1.6	6.2	9.9	2.2	1	1	1	2	2	2	0	AcrB/AcrD/AcrF	family
SecD_SecF	PF02355.16	gi|529078848|ref|YP_008377851.1|	-	9.5e-18	64.3	3.5	2.2e-17	63.1	3.5	1.5	1	0	0	1	1	1	1	Protein	export	membrane	protein
MMPL	PF03176.15	gi|529078848|ref|YP_008377851.1|	-	6.8e-05	22.0	10.3	0.00012	21.1	10.3	1.3	1	0	0	1	1	1	1	MMPL	family
PGC7_Stella	PF15549.6	gi|529078848|ref|YP_008377851.1|	-	0.22	11.5	0.0	0.44	10.5	0.0	1.4	1	0	0	1	1	1	0	PGC7/Stella/Dppa3	domain
DUF2197	PF09963.9	gi|529078849|ref|YP_008377852.1|	-	0.0049	17.1	1.1	2.8	8.3	0.1	2.1	2	0	0	2	2	2	2	Uncharacterized	protein	conserved	in	bacteria	(DUF2197)
zf_UBZ	PF18439.1	gi|529078849|ref|YP_008377852.1|	-	0.0065	16.0	3.8	0.65	9.6	0.2	2.1	2	0	0	2	2	2	2	Ubiquitin-Binding	Zinc	Finger
zf-FPG_IleRS	PF06827.14	gi|529078849|ref|YP_008377852.1|	-	0.021	14.7	3.0	3.1	7.7	0.2	2.4	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
HypA	PF01155.19	gi|529078849|ref|YP_008377852.1|	-	0.025	14.6	1.2	0.027	14.5	1.2	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc-ribbons_6	PF07191.12	gi|529078849|ref|YP_008377852.1|	-	0.036	14.0	4.1	0.27	11.2	4.1	1.9	1	1	0	1	1	1	0	zinc-ribbons
zf-ACC	PF17848.1	gi|529078849|ref|YP_008377852.1|	-	0.063	13.4	4.2	0.41	10.8	0.1	2.2	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
Zn_Tnp_IS1595	PF12760.7	gi|529078849|ref|YP_008377852.1|	-	0.13	12.3	0.8	0.13	12.3	0.8	2.1	1	1	0	2	2	2	0	Transposase	zinc-ribbon	domain
LIM	PF00412.22	gi|529078849|ref|YP_008377852.1|	-	0.14	12.4	4.3	6	7.2	4.3	2.0	1	1	0	1	1	1	0	LIM	domain
Sgf11	PF08209.11	gi|529078849|ref|YP_008377852.1|	-	0.15	11.7	3.5	3.2	7.4	0.1	2.1	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
Zn-ribbon_8	PF09723.10	gi|529078849|ref|YP_008377852.1|	-	0.16	12.1	4.7	3.3	7.9	4.6	2.1	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-B_box	PF00643.24	gi|529078849|ref|YP_008377852.1|	-	0.19	11.9	5.6	0.82	9.9	0.5	2.1	2	0	0	2	2	2	0	B-box	zinc	finger
Orn_Arg_deC_N	PF02784.16	gi|529078850|ref|YP_008377853.1|	-	2.7e-42	144.9	0.0	3.3e-42	144.6	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	pyridoxal	binding	domain
Orn_DAP_Arg_deC	PF00278.22	gi|529078850|ref|YP_008377853.1|	-	1.7e-20	73.1	0.0	1.7e-20	73.1	0.0	1.3	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	C-terminal	sheet	domain
Peptidase_M20	PF01546.28	gi|529078851|ref|YP_008377854.1|	-	3.9e-24	85.5	1.0	5.8e-24	85.0	1.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|529078851|ref|YP_008377854.1|	-	1.1e-18	67.1	0.1	3.9e-18	65.4	0.0	1.9	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
Glyco_transf_21	PF13506.6	gi|529078852|ref|YP_008377855.1|	-	6.1e-09	35.6	0.0	1.2e-08	34.7	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glycos_transf_2	PF00535.26	gi|529078852|ref|YP_008377855.1|	-	1.3e-06	28.3	0.4	2.7e-06	27.3	0.4	1.6	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|529078852|ref|YP_008377855.1|	-	0.019	14.9	0.0	0.023	14.6	0.0	1.2	1	0	0	1	1	1	0	Glycosyltransferase	like	family	2
tRNA-synt_2b	PF00587.25	gi|529078853|ref|YP_008377856.1|	-	6e-21	75.2	0.0	9.5e-21	74.6	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.20	gi|529078853|ref|YP_008377856.1|	-	1.6e-19	69.8	0.1	3.7e-19	68.7	0.1	1.7	1	0	0	1	1	1	1	Anticodon	binding	domain
ProRS-C_1	PF09180.11	gi|529078853|ref|YP_008377856.1|	-	2e-17	63.1	1.1	5.3e-17	61.8	1.1	1.8	1	0	0	1	1	1	1	Prolyl-tRNA	synthetase,	C-terminal
VATC	PF18716.1	gi|529078853|ref|YP_008377856.1|	-	0.57	10.1	0.1	0.57	10.1	0.1	2.2	2	0	0	2	2	2	0	Vms1-associating	treble	clef	domain
AstE_AspA	PF04952.14	gi|529078854|ref|YP_008377857.1|	-	6.1e-14	51.8	0.0	8e-14	51.4	0.0	1.1	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
Peptidase_M99	PF17033.5	gi|529078854|ref|YP_008377857.1|	-	0.0023	17.4	0.0	0.0031	17.0	0.0	1.1	1	0	0	1	1	1	1	Carboxypeptidase	controlling	helical	cell	shape	catalytic
FG-GAP	PF01839.23	gi|529078854|ref|YP_008377857.1|	-	0.13	12.4	1.2	0.35	11.0	1.2	1.7	1	0	0	1	1	1	0	FG-GAP	repeat
KH_7	PF17214.3	gi|529078856|ref|YP_008377859.1|	-	1.1e-31	108.6	1.4	7.2e-29	99.6	0.3	2.7	2	0	0	2	2	2	2	KH	domain
Beta-Casp	PF10996.8	gi|529078856|ref|YP_008377859.1|	-	6.9e-22	77.8	0.0	1.4e-21	76.8	0.0	1.5	1	0	0	1	1	1	1	Beta-Casp	domain
RMMBL	PF07521.12	gi|529078856|ref|YP_008377859.1|	-	4.3e-16	58.6	0.0	1.1e-15	57.3	0.0	1.8	1	0	0	1	1	1	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B	PF00753.27	gi|529078856|ref|YP_008377859.1|	-	4.1e-12	46.5	2.7	1.9e-11	44.4	2.7	2.0	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_6	PF16661.5	gi|529078856|ref|YP_008377859.1|	-	9e-10	38.3	0.0	1.5e-09	37.6	0.0	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|529078856|ref|YP_008377859.1|	-	1.9e-08	34.1	0.1	3.6e-08	33.2	0.1	1.5	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
KH_2	PF07650.17	gi|529078856|ref|YP_008377859.1|	-	1.6e-07	31.1	0.0	1.2e-06	28.2	0.0	2.2	2	0	0	2	2	2	1	KH	domain
Lactamase_B_3	PF13483.6	gi|529078856|ref|YP_008377859.1|	-	0.003	17.5	0.2	0.0069	16.3	0.0	1.6	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
KH_4	PF13083.6	gi|529078856|ref|YP_008377859.1|	-	0.0053	16.6	0.1	0.014	15.3	0.1	1.6	1	0	0	1	1	1	1	KH	domain
KH_1	PF00013.29	gi|529078856|ref|YP_008377859.1|	-	0.023	14.5	0.1	0.07	13.0	0.0	1.8	2	0	0	2	2	2	0	KH	domain
Abhydrolase_6	PF12697.7	gi|529078857|ref|YP_008377860.1|	-	5.5e-24	86.0	4.3	6.7e-24	85.7	4.3	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|529078857|ref|YP_008377860.1|	-	9.7e-23	81.1	0.0	9.8e-21	74.5	0.0	2.0	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|529078857|ref|YP_008377860.1|	-	8.2e-18	64.5	0.0	1.2e-17	64.0	0.0	1.4	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Peptidase_S9	PF00326.21	gi|529078857|ref|YP_008377860.1|	-	0.0017	17.8	0.0	0.0066	15.9	0.0	2.2	1	1	1	2	2	2	1	Prolyl	oligopeptidase	family
Abhydrolase_4	PF08386.10	gi|529078857|ref|YP_008377860.1|	-	0.0021	18.1	0.0	0.15	12.2	0.0	2.4	2	0	0	2	2	2	1	TAP-like	protein
UPF0227	PF05728.12	gi|529078857|ref|YP_008377860.1|	-	0.15	12.0	0.0	0.21	11.5	0.0	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0227)
Glyco_hydro_43	PF04616.14	gi|529078858|ref|YP_008377861.1|	-	4.7e-79	265.7	0.2	6e-79	265.3	0.2	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	43
GH43_C2	PF17851.1	gi|529078858|ref|YP_008377861.1|	-	4.8e-35	121.1	0.0	2.4e-34	118.8	0.0	1.9	2	0	0	2	2	2	1	Beta	xylosidase	C-terminal	Concanavalin	A-like	domain
Laminin_G_3	PF13385.6	gi|529078858|ref|YP_008377861.1|	-	0.086	13.0	0.2	0.24	11.5	0.0	1.8	2	0	0	2	2	2	0	Concanavalin	A-like	lectin/glucanases	superfamily
Big_6	PF17936.1	gi|529078858|ref|YP_008377861.1|	-	0.11	12.8	0.1	0.41	10.9	0.0	2.0	2	0	0	2	2	2	0	Bacterial	Ig	domain
Glyco_hyd_65N_2	PF14498.6	gi|529078859|ref|YP_008377862.1|	-	2.2e-65	220.8	0.0	3.8e-65	220.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	65,	N-terminal	domain
DUF4232	PF14016.6	gi|529078859|ref|YP_008377862.1|	-	0.017	15.2	0.1	0.017	15.2	0.1	2.7	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF4232)
Aldo_ket_red	PF00248.21	gi|529078860|ref|YP_008377863.1|	-	2.9e-72	243.4	0.0	3.2e-72	243.2	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
HhH-GPD	PF00730.25	gi|529078861|ref|YP_008377864.1|	-	4.1e-18	65.8	0.0	7e-18	65.1	0.0	1.4	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH_5	PF14520.6	gi|529078861|ref|YP_008377864.1|	-	0.00096	19.7	0.3	0.06	14.0	0.0	2.6	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
HHH	PF00633.23	gi|529078861|ref|YP_008377864.1|	-	0.0018	18.1	0.0	0.0043	16.9	0.0	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
EndIII_4Fe-2S	PF10576.9	gi|529078861|ref|YP_008377864.1|	-	0.0034	17.7	6.4	0.0034	17.7	6.4	1.8	2	0	0	2	2	2	1	Iron-sulfur	binding	domain	of	endonuclease	III
TetR_C_36	PF18598.1	gi|529078861|ref|YP_008377864.1|	-	0.083	12.9	0.0	0.23	11.4	0.0	1.7	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
DUF371	PF04027.13	gi|529078862|ref|YP_008377865.1|	-	4.7e-54	182.0	1.1	5.2e-54	181.8	1.1	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF371)
MerB	PF03243.15	gi|529078862|ref|YP_008377865.1|	-	0.079	13.1	0.1	0.12	12.5	0.1	1.3	1	0	0	1	1	1	0	Alkylmercury	lyase
DUF373	PF04123.13	gi|529078863|ref|YP_008377866.1|	-	2e-100	336.5	8.5	2.4e-100	336.3	8.5	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
LANC_like	PF05147.13	gi|529078863|ref|YP_008377866.1|	-	0.041	12.5	0.0	0.054	12.1	0.0	1.1	1	0	0	1	1	1	0	Lanthionine	synthetase	C-like	protein
SUR7	PF06687.12	gi|529078863|ref|YP_008377866.1|	-	0.058	13.0	4.1	0.039	13.6	1.4	1.9	1	1	0	1	1	1	0	SUR7/PalI	family
T3SSipB	PF16535.5	gi|529078864|ref|YP_008377867.1|	-	0.0017	18.8	8.1	0.0017	18.8	8.1	3.1	1	1	1	2	2	2	1	Type	III	cell	invasion	protein	SipB
TOM20_plant	PF06552.12	gi|529078864|ref|YP_008377867.1|	-	0.0055	16.5	5.4	0.013	15.3	5.4	1.6	1	0	0	1	1	1	1	Plant	specific	mitochondrial	import	receptor	subunit	TOM20
Laminin_II	PF06009.12	gi|529078864|ref|YP_008377867.1|	-	0.14	12.1	32.0	0.2	11.6	12.9	3.1	1	1	1	3	3	3	0	Laminin	Domain	II
Glyco_hydro_2	PF00703.21	gi|529078865|ref|YP_008377868.1|	-	1.6e-07	32.0	0.0	3.9e-07	30.7	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2
Glyco_hydro_2_N	PF02837.18	gi|529078865|ref|YP_008377868.1|	-	0.00014	21.8	0.0	0.00026	20.9	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2,	sugar	binding	domain
BetaGal_dom4_5	PF13364.6	gi|529078865|ref|YP_008377868.1|	-	0.02	15.4	0.0	0.049	14.2	0.0	1.6	1	0	0	1	1	1	0	Beta-galactosidase	jelly	roll	domain
Peptidase_S29	PF02907.15	gi|529078866|ref|YP_008377869.1|	-	0.015	15.0	0.1	0.015	15.0	0.1	1.1	1	0	0	1	1	1	0	Hepatitis	C	virus	NS3	protease
Diphthami_syn_2	PF01902.17	gi|529078867|ref|YP_008377870.1|	-	2e-56	190.9	0.0	4.2e-56	189.9	0.0	1.4	1	1	0	1	1	1	1	Diphthamide	synthase
QueC	PF06508.13	gi|529078867|ref|YP_008377870.1|	-	0.081	12.4	0.0	0.12	11.9	0.0	1.3	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
ThiI	PF02568.14	gi|529078867|ref|YP_008377870.1|	-	0.18	11.4	0.0	0.28	10.7	0.0	1.3	1	0	0	1	1	1	0	Thiamine	biosynthesis	protein	(ThiI)
DUF2330	PF10092.9	gi|529078869|ref|YP_008377872.1|	-	0.035	13.2	0.0	0.04	13.0	0.0	1.0	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2330)
Y1_Tnp	PF01797.16	gi|529078870|ref|YP_008377873.1|	-	4.6e-30	104.2	0.1	6.2e-28	97.3	0.0	2.0	2	0	0	2	2	2	2	Transposase	IS200	like
OrfB_IS605	PF01385.19	gi|529078871|ref|YP_008377874.1|	-	4.6e-31	107.5	0.1	8e-31	106.8	0.1	1.4	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|529078871|ref|YP_008377874.1|	-	6.7e-18	64.4	0.7	1.3e-17	63.5	0.7	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
NTP_transferase	PF00483.23	gi|529078872|ref|YP_008377875.1|	-	6.3e-38	130.8	0.0	1.1e-37	129.9	0.0	1.3	2	0	0	2	2	2	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|529078872|ref|YP_008377875.1|	-	9.9e-13	48.8	0.0	1.2e-12	48.5	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|529078872|ref|YP_008377875.1|	-	0.05	13.3	0.5	0.7	9.7	0.1	2.6	2	0	0	2	2	2	0	Bacterial	transferase	hexapeptide	(six	repeats)
IspD	PF01128.19	gi|529078872|ref|YP_008377875.1|	-	0.097	12.4	0.1	0.47	10.2	0.0	2.0	2	0	0	2	2	2	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
HTH_10	PF04967.12	gi|529078874|ref|YP_008377877.1|	-	1.5e-21	75.9	0.0	2.5e-21	75.2	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|529078874|ref|YP_008377877.1|	-	2.2e-05	24.4	0.9	5.9e-05	23.0	0.9	1.8	1	1	0	1	1	1	1	GAF	and	HTH_10	associated	domain
Fe_dep_repress	PF01325.19	gi|529078874|ref|YP_008377877.1|	-	0.011	15.9	0.0	0.029	14.6	0.0	1.6	1	1	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.7	gi|529078874|ref|YP_008377877.1|	-	0.04	13.8	0.0	0.088	12.7	0.0	1.6	1	0	0	1	1	1	0	MarR	family
Homeodomain	PF00046.29	gi|529078874|ref|YP_008377877.1|	-	0.064	13.1	0.0	0.12	12.2	0.0	1.4	1	0	0	1	1	1	0	Homeodomain
Sigma70_r4	PF04545.16	gi|529078874|ref|YP_008377877.1|	-	0.076	12.5	0.0	0.17	11.5	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
RRG8	PF17068.5	gi|529078874|ref|YP_008377877.1|	-	0.22	10.9	0.0	0.36	10.2	0.0	1.3	1	0	0	1	1	1	0	Required	for	respiratory	growth	protein	8	mitochondrial
PALP	PF00291.25	gi|529078875|ref|YP_008377878.1|	-	9.6e-58	195.9	2.4	1.1e-57	195.7	2.4	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
DUF1508	PF07411.12	gi|529078876|ref|YP_008377879.1|	-	3.8e-81	266.8	13.4	5.4e-19	67.8	0.3	5.3	5	0	0	5	5	5	5	Domain	of	unknown	function	(DUF1508)
UPF0242	PF06785.11	gi|529078876|ref|YP_008377879.1|	-	3.9e-05	23.8	0.9	0.0002	21.5	0.1	2.4	2	1	0	2	2	2	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
CALCOCO1	PF07888.11	gi|529078876|ref|YP_008377879.1|	-	0.003	16.5	1.3	0.0048	15.8	1.3	1.2	1	0	0	1	1	1	1	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
Snf7	PF03357.21	gi|529078876|ref|YP_008377879.1|	-	0.033	13.8	3.3	0.062	12.9	3.3	1.3	1	0	0	1	1	1	0	Snf7
HlyIII	PF03006.20	gi|529078876|ref|YP_008377879.1|	-	0.1	12.3	4.2	0.12	12.1	3.1	1.5	1	1	1	2	2	2	0	Haemolysin-III	related
DUF5110	PF17137.4	gi|529078876|ref|YP_008377879.1|	-	0.3	11.4	4.1	43	4.5	0.0	4.6	5	0	0	5	5	5	0	Domain	of	unknown	function	(DUF5110)
APG6_N	PF17675.1	gi|529078876|ref|YP_008377879.1|	-	0.43	11.1	4.5	0.99	9.9	4.5	1.6	1	0	0	1	1	1	0	Apg6	coiled-coil	region
Syntaxin-6_N	PF09177.11	gi|529078876|ref|YP_008377879.1|	-	0.67	10.5	2.5	0.83	10.2	1.2	1.8	2	0	0	2	2	2	0	Syntaxin	6,	N-terminal
DUF2157	PF09925.9	gi|529078876|ref|YP_008377879.1|	-	0.87	9.4	7.0	33	4.2	7.0	2.2	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2157)
ATG16	PF08614.11	gi|529078876|ref|YP_008377879.1|	-	1.1	9.4	10.2	0.3	11.3	7.2	1.5	2	0	0	2	2	2	0	Autophagy	protein	16	(ATG16)
DCD	PF06559.11	gi|529078877|ref|YP_008377880.1|	-	1.2e-16	60.4	0.0	5.7e-14	51.7	0.0	2.1	1	1	0	1	1	1	1	2'-deoxycytidine	5'-triphosphate	deaminase	(DCD)
dUTPase	PF00692.19	gi|529078877|ref|YP_008377880.1|	-	2.1e-13	50.1	0.0	2.9e-13	49.6	0.0	1.2	1	0	0	1	1	1	1	dUTPase
ThiP_synth	PF10120.9	gi|529078878|ref|YP_008377881.1|	-	4.9e-51	172.6	0.2	6.5e-51	172.2	0.2	1.2	1	0	0	1	1	1	1	Thiamine-phosphate	synthase
HTH_3	PF01381.22	gi|529078878|ref|YP_008377881.1|	-	8.9e-07	28.9	0.1	1.8e-06	27.9	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|529078878|ref|YP_008377881.1|	-	0.00021	21.5	0.5	0.00021	21.5	0.5	2.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_37	PF13744.6	gi|529078878|ref|YP_008377881.1|	-	0.00033	20.5	0.0	0.00068	19.5	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|529078878|ref|YP_008377881.1|	-	0.0012	18.3	2.1	0.0023	17.4	0.0	2.4	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_24	PF13412.6	gi|529078878|ref|YP_008377881.1|	-	0.0015	18.1	0.0	0.0033	17.0	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_26	PF13443.6	gi|529078878|ref|YP_008377881.1|	-	0.0026	18.1	0.1	0.0047	17.3	0.1	1.4	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_19	PF12844.7	gi|529078878|ref|YP_008377881.1|	-	0.0029	17.6	0.1	0.0056	16.7	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|529078878|ref|YP_008377881.1|	-	0.0045	16.7	0.0	0.012	15.4	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
P22_Cro	PF14549.6	gi|529078878|ref|YP_008377881.1|	-	0.071	13.0	0.1	0.18	11.7	0.0	1.6	2	0	0	2	2	2	0	DNA-binding	transcriptional	regulator	Cro
MarR_2	PF12802.7	gi|529078878|ref|YP_008377881.1|	-	0.099	12.6	1.8	0.22	11.5	0.0	2.6	3	0	0	3	3	3	0	MarR	family
Ubie_methyltran	PF01209.18	gi|529078879|ref|YP_008377882.1|	-	8.8e-15	54.7	0.0	1.1e-14	54.4	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_25	PF13649.6	gi|529078879|ref|YP_008377882.1|	-	2e-14	54.0	0.0	3.1e-14	53.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|529078879|ref|YP_008377882.1|	-	3.9e-14	52.7	0.0	5.3e-14	52.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|529078879|ref|YP_008377882.1|	-	9.5e-13	48.6	0.0	1.4e-12	48.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|529078879|ref|YP_008377882.1|	-	3.3e-11	43.8	0.0	5e-11	43.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|529078879|ref|YP_008377882.1|	-	6.2e-10	39.2	0.1	1.2e-09	38.2	0.1	1.4	1	1	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_23	PF13489.6	gi|529078879|ref|YP_008377882.1|	-	1.4e-09	38.0	0.0	1.7e-09	37.8	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_4	PF02390.17	gi|529078879|ref|YP_008377882.1|	-	5.4e-05	22.7	0.0	6.7e-05	22.4	0.0	1.1	1	0	0	1	1	1	1	Putative	methyltransferase
FtsJ	PF01728.19	gi|529078879|ref|YP_008377882.1|	-	0.00086	19.5	0.0	0.004	17.3	0.0	1.8	1	1	1	2	2	2	1	FtsJ-like	methyltransferase
CMAS	PF02353.20	gi|529078879|ref|YP_008377882.1|	-	0.0081	15.5	0.0	0.012	14.9	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
GCD14	PF08704.10	gi|529078879|ref|YP_008377882.1|	-	0.02	14.6	0.0	0.026	14.2	0.0	1.1	1	0	0	1	1	1	0	tRNA	methyltransferase	complex	GCD14	subunit
RrnaAD	PF00398.20	gi|529078879|ref|YP_008377882.1|	-	0.17	10.9	0.0	0.29	10.2	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Thi4	PF01946.17	gi|529078881|ref|YP_008377884.1|	-	4.2e-62	209.5	0.4	1.1e-49	168.8	0.1	2.1	1	1	1	2	2	2	2	Thi4	family
FAD_oxidored	PF12831.7	gi|529078881|ref|YP_008377884.1|	-	5.7e-10	39.1	0.2	8.6e-10	38.5	0.2	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|529078881|ref|YP_008377884.1|	-	8.8e-10	38.3	0.0	1.5e-09	37.6	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
FAD_binding_2	PF00890.24	gi|529078881|ref|YP_008377884.1|	-	4.2e-09	36.0	1.7	1.2e-07	31.2	0.1	2.4	1	1	1	3	3	3	1	FAD	binding	domain
DAO	PF01266.24	gi|529078881|ref|YP_008377884.1|	-	1.5e-08	34.6	0.5	1.9e-05	24.4	0.1	2.2	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|529078881|ref|YP_008377884.1|	-	1.6e-08	33.7	0.1	2.3e-08	33.2	0.1	1.2	1	0	0	1	1	1	1	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|529078881|ref|YP_008377884.1|	-	1.6e-07	31.5	0.0	3.7e-07	30.3	0.0	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.14	gi|529078881|ref|YP_008377884.1|	-	4.1e-07	29.5	0.0	8.1e-07	28.6	0.0	1.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|529078881|ref|YP_008377884.1|	-	3.4e-05	24.3	0.1	0.00011	22.7	0.1	1.8	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.14	gi|529078881|ref|YP_008377884.1|	-	3.7e-05	22.8	0.1	0.041	12.7	0.0	2.2	2	0	0	2	2	2	2	Tryptophan	halogenase
Pyr_redox_3	PF13738.6	gi|529078881|ref|YP_008377884.1|	-	0.0001	21.7	0.4	0.00018	20.9	0.4	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|529078881|ref|YP_008377884.1|	-	0.00088	18.4	0.2	0.009	15.1	0.0	2.0	2	0	0	2	2	2	1	Lycopene	cyclase	protein
Glu_dehyd_C	PF16912.5	gi|529078881|ref|YP_008377884.1|	-	0.00097	18.7	3.2	0.72	9.3	0.1	3.2	4	0	0	4	4	4	2	Glucose	dehydrogenase	C-terminus
NAD_binding_9	PF13454.6	gi|529078881|ref|YP_008377884.1|	-	0.0013	18.7	0.1	0.0034	17.4	0.1	1.7	1	0	0	1	1	1	1	FAD-NAD(P)-binding
Shikimate_DH	PF01488.20	gi|529078881|ref|YP_008377884.1|	-	0.0017	18.4	0.0	0.11	12.6	0.0	2.2	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
Amino_oxidase	PF01593.24	gi|529078881|ref|YP_008377884.1|	-	0.0018	17.6	0.0	0.0028	17.0	0.0	1.3	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
GIDA	PF01134.22	gi|529078881|ref|YP_008377884.1|	-	0.0023	17.1	0.1	0.0038	16.4	0.1	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
NAD_binding_7	PF13241.6	gi|529078881|ref|YP_008377884.1|	-	0.015	15.7	0.1	0.028	14.8	0.1	1.6	1	1	0	1	1	1	0	Putative	NAD(P)-binding
TrkA_N	PF02254.18	gi|529078881|ref|YP_008377884.1|	-	0.074	13.3	0.1	0.15	12.3	0.1	1.5	1	0	0	1	1	1	0	TrkA-N	domain
UPF0126	PF03458.13	gi|529078882|ref|YP_008377885.1|	-	5.3e-34	116.0	31.2	1.4e-18	66.6	7.9	2.9	2	1	1	3	3	3	2	UPF0126	domain
CheC	PF04509.12	gi|529078883|ref|YP_008377886.1|	-	5.4e-14	51.8	0.1	1.3e-13	50.6	0.1	1.7	1	0	0	1	1	1	1	CheC-like	family
CheX	PF13690.6	gi|529078883|ref|YP_008377886.1|	-	2.3e-05	24.5	0.1	3.9e-05	23.7	0.1	1.4	1	0	0	1	1	1	1	Chemotaxis	phosphatase	CheX
PPS_PS	PF02006.16	gi|529078884|ref|YP_008377887.1|	-	3.3e-75	251.5	1.5	4.3e-75	251.1	1.5	1.1	1	0	0	1	1	1	1	Phosphopantothenate/pantothenate	synthetase
OrfB_IS605	PF01385.19	gi|529078886|ref|YP_008377889.1|	-	2.1e-31	108.6	0.1	4e-31	107.7	0.1	1.5	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|529078886|ref|YP_008377889.1|	-	6.6e-20	70.8	0.2	1.3e-19	69.9	0.2	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
GHMP_kinases_N	PF00288.26	gi|529078887|ref|YP_008377890.1|	-	2.5e-08	34.0	2.0	5.3e-08	33.0	2.0	1.6	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|529078887|ref|YP_008377890.1|	-	0.036	14.4	0.6	0.39	11.1	0.0	2.5	3	0	0	3	3	3	0	GHMP	kinases	C	terminal
UPF0175	PF03683.13	gi|529078888|ref|YP_008377891.1|	-	1.5e-08	34.3	0.5	2e-08	33.8	0.4	1.3	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
RHH_1	PF01402.21	gi|529078888|ref|YP_008377891.1|	-	0.011	15.7	1.0	0.022	14.7	0.3	1.9	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
Ehrlichia_rpt	PF09528.10	gi|529078889|ref|YP_008377892.1|	-	0.049	13.1	0.1	0.11	11.9	0.1	1.5	1	0	0	1	1	1	0	Ehrlichia	tandem	repeat	(Ehrlichia_rpt)
tRNA-synt_2	PF00152.20	gi|529078891|ref|YP_008377894.1|	-	3.1e-84	282.7	0.0	3.7e-84	282.5	0.0	1.0	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.25	gi|529078891|ref|YP_008377894.1|	-	1.5e-15	56.9	0.2	2.5e-15	56.2	0.2	1.4	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA-synt_2d	PF01409.20	gi|529078891|ref|YP_008377894.1|	-	0.0085	15.6	0.2	0.073	12.5	0.0	2.3	3	0	0	3	3	3	1	tRNA	synthetases	class	II	core	domain	(F)
HTH_AsnC-type	PF13404.6	gi|529078892|ref|YP_008377895.1|	-	2e-11	43.5	0.7	4.7e-11	42.3	0.7	1.7	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|529078892|ref|YP_008377895.1|	-	3e-11	42.7	0.0	5.4e-11	41.9	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Fe_dep_repress	PF01325.19	gi|529078892|ref|YP_008377895.1|	-	2.3e-07	30.9	0.0	5.8e-07	29.6	0.0	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_11	PF08279.12	gi|529078892|ref|YP_008377895.1|	-	5.6e-06	26.2	0.0	1.5e-05	24.8	0.0	1.7	1	0	0	1	1	1	1	HTH	domain
HTH_DeoR	PF08220.12	gi|529078892|ref|YP_008377895.1|	-	0.0003	20.5	0.1	0.00058	19.5	0.1	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_20	PF12840.7	gi|529078892|ref|YP_008377895.1|	-	0.00051	20.0	0.0	0.0011	19.0	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|529078892|ref|YP_008377895.1|	-	0.0013	18.6	0.1	0.003	17.4	0.1	1.6	1	0	0	1	1	1	1	MarR	family
HTH_23	PF13384.6	gi|529078892|ref|YP_008377895.1|	-	0.0025	17.6	0.0	0.0053	16.5	0.0	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_5	PF01022.20	gi|529078892|ref|YP_008377895.1|	-	0.004	17.0	0.0	0.0066	16.3	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Sigma70_r4_2	PF08281.12	gi|529078892|ref|YP_008377895.1|	-	0.0066	16.1	0.1	0.019	14.6	0.1	1.8	1	1	0	1	1	1	1	Sigma-70,	region	4
HTH_Tnp_ISL3	PF13542.6	gi|529078892|ref|YP_008377895.1|	-	0.0083	15.5	0.2	0.015	14.7	0.2	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_IclR	PF09339.10	gi|529078892|ref|YP_008377895.1|	-	0.0093	15.7	0.1	0.023	14.5	0.1	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|529078892|ref|YP_008377895.1|	-	0.015	15.2	0.0	0.028	14.3	0.0	1.5	1	0	0	1	1	1	0	MarR	family
Rrf2	PF02082.20	gi|529078892|ref|YP_008377895.1|	-	0.016	15.5	0.0	0.035	14.4	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_29	PF13551.6	gi|529078892|ref|YP_008377895.1|	-	0.02	14.9	0.0	0.033	14.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
Sigma70_r4	PF04545.16	gi|529078892|ref|YP_008377895.1|	-	0.025	14.1	0.3	0.07	12.7	0.1	1.9	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_28	PF13518.6	gi|529078892|ref|YP_008377895.1|	-	0.027	14.6	0.0	0.064	13.4	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_10	PF04967.12	gi|529078892|ref|YP_008377895.1|	-	0.036	13.9	0.1	0.06	13.2	0.1	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
GntR	PF00392.21	gi|529078892|ref|YP_008377895.1|	-	0.046	13.4	0.1	0.18	11.5	0.0	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HrcA_DNA-bdg	PF03444.15	gi|529078892|ref|YP_008377895.1|	-	0.063	12.9	0.0	0.12	12.0	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
AsnC_trans_reg	PF01037.21	gi|529078892|ref|YP_008377895.1|	-	0.095	12.7	0.4	1.1	9.3	0.0	2.1	2	0	0	2	2	2	0	Lrp/AsnC	ligand	binding	domain
GerE	PF00196.19	gi|529078892|ref|YP_008377895.1|	-	0.12	12.0	0.1	0.26	10.9	0.1	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_38	PF13936.6	gi|529078892|ref|YP_008377895.1|	-	0.15	11.9	0.1	0.15	11.9	0.1	2.4	3	0	0	3	3	3	0	Helix-turn-helix	domain
Sigma70_r3	PF04539.16	gi|529078892|ref|YP_008377895.1|	-	2.1	8.5	5.0	0.93	9.6	0.2	2.6	3	0	0	3	3	3	0	Sigma-70	region	3
TrkA_N	PF02254.18	gi|529078893|ref|YP_008377896.1|	-	6.1e-08	32.9	2.8	7.7e-08	32.6	2.8	1.2	1	0	0	1	1	1	1	TrkA-N	domain
Transcrip_act	PF04949.13	gi|529078893|ref|YP_008377896.1|	-	0.077	12.9	0.1	0.091	12.6	0.1	1.3	1	0	0	1	1	1	0	Transcriptional	activator
SepF	PF04472.12	gi|529078893|ref|YP_008377896.1|	-	0.086	13.1	0.4	0.21	11.9	0.1	1.8	2	0	0	2	2	2	0	Cell	division	protein	SepF
AA_permease_2	PF13520.6	gi|529078894|ref|YP_008377897.1|	-	3.4e-41	141.5	44.7	4.3e-41	141.1	44.7	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|529078894|ref|YP_008377897.1|	-	5.4e-39	134.1	42.2	7.2e-39	133.7	42.2	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Usp	PF00582.26	gi|529078894|ref|YP_008377897.1|	-	1.2e-08	35.5	10.2	7.5e-08	33.0	1.4	3.0	2	1	0	2	2	2	2	Universal	stress	protein	family
SURF4	PF02077.15	gi|529078894|ref|YP_008377897.1|	-	0.019	14.5	1.0	0.019	14.5	1.0	1.9	2	0	0	2	2	2	0	SURF4	family
AAA_25	PF13481.6	gi|529078894|ref|YP_008377897.1|	-	0.76	9.3	3.5	16	5.0	0.3	2.4	1	1	1	2	2	2	0	AAA	domain
Topoisom_bac	PF01131.20	gi|529078895|ref|YP_008377898.1|	-	7.2e-125	417.2	0.0	8.9e-125	416.9	0.0	1.1	1	0	0	1	1	1	1	DNA	topoisomerase
zf-C4_Topoisom	PF01396.19	gi|529078895|ref|YP_008377898.1|	-	3.6e-20	71.4	19.8	1.4e-14	53.6	1.2	4.4	5	0	0	5	5	5	2	Topoisomerase	DNA	binding	C4	zinc	finger
Toprim	PF01751.22	gi|529078895|ref|YP_008377898.1|	-	7.5e-20	71.1	0.0	1.7e-19	70.0	0.0	1.6	1	0	0	1	1	1	1	Toprim	domain
HHH_5	PF14520.6	gi|529078895|ref|YP_008377898.1|	-	6.6e-07	29.8	0.1	1.9e-06	28.4	0.1	1.9	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
Cdd1	PF11731.8	gi|529078895|ref|YP_008377898.1|	-	0.0012	19.1	0.0	0.0034	17.6	0.0	1.8	1	0	0	1	1	1	1	Pathogenicity	locus
HHH	PF00633.23	gi|529078895|ref|YP_008377898.1|	-	0.0016	18.2	0.0	0.0057	16.5	0.0	1.9	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
Toprim_4	PF13662.6	gi|529078895|ref|YP_008377898.1|	-	0.022	15.2	0.1	0.079	13.4	0.1	2.0	1	0	0	1	1	1	0	Toprim	domain
Ogr_Delta	PF04606.12	gi|529078895|ref|YP_008377898.1|	-	1.2	9.1	9.3	0.24	11.4	0.1	3.4	3	1	0	3	3	3	0	Ogr/Delta-like	zinc	finger
Rubredoxin_2	PF18073.1	gi|529078895|ref|YP_008377898.1|	-	1.6	8.5	5.5	15	5.4	0.0	3.2	3	0	0	3	3	3	0	Rubredoxin	metal	binding	domain
Zn-ribbon_8	PF09723.10	gi|529078895|ref|YP_008377898.1|	-	6.3	7.0	13.9	9.2	6.5	0.0	4.4	3	1	1	4	4	4	0	Zinc	ribbon	domain
GatB_N	PF02934.15	gi|529078897|ref|YP_008377900.1|	-	3e-98	328.6	0.0	4e-98	328.2	0.0	1.1	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.18	gi|529078897|ref|YP_008377900.1|	-	6.8e-40	136.4	0.0	1.1e-39	135.7	0.0	1.3	1	0	0	1	1	1	1	GatB	domain
Lsr2	PF11774.8	gi|529078897|ref|YP_008377900.1|	-	0.7	10.1	4.4	2.1	8.5	4.1	2.1	1	1	1	2	2	2	0	Lsr2
FlaC_arch	PF05377.11	gi|529078899|ref|YP_008377902.1|	-	0.014	15.8	0.7	0.014	15.8	0.7	1.7	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
SlyX	PF04102.12	gi|529078899|ref|YP_008377902.1|	-	0.11	13.2	1.6	0.15	12.7	1.6	1.6	1	1	0	1	1	1	0	SlyX
LTV	PF04180.14	gi|529078899|ref|YP_008377902.1|	-	0.11	12.2	5.0	0.12	12.1	5.0	1.0	1	0	0	1	1	1	0	Low	temperature	viability	protein
SMC_N	PF02463.19	gi|529078900|ref|YP_008377903.1|	-	6.8e-51	172.8	51.8	7.7e-31	107.2	0.0	3.1	2	2	0	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
SMC_hinge	PF06470.13	gi|529078900|ref|YP_008377903.1|	-	3.5e-29	101.5	0.0	8.6e-29	100.2	0.0	1.7	1	0	0	1	1	1	1	SMC	proteins	Flexible	Hinge	Domain
AAA_15	PF13175.6	gi|529078900|ref|YP_008377903.1|	-	9.4e-10	38.7	14.4	9.4e-10	38.7	14.4	4.5	2	2	0	2	2	1	1	AAA	ATPase	domain
ATG16	PF08614.11	gi|529078900|ref|YP_008377903.1|	-	2.2e-07	31.3	154.1	0.025	14.8	31.8	9.1	2	2	6	9	9	9	4	Autophagy	protein	16	(ATG16)
AAA_21	PF13304.6	gi|529078900|ref|YP_008377903.1|	-	1.1e-06	28.6	32.2	0.00014	21.8	0.0	5.3	3	2	0	4	4	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Spc7	PF08317.11	gi|529078900|ref|YP_008377903.1|	-	1.2e-06	27.6	145.6	0.15	10.9	20.3	8.6	2	2	6	8	8	8	6	Spc7	kinetochore	protein
AAA_29	PF13555.6	gi|529078900|ref|YP_008377903.1|	-	1.7e-06	27.6	0.0	4e-06	26.5	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_13	PF13166.6	gi|529078900|ref|YP_008377903.1|	-	1.3e-05	24.1	105.0	7.6e-05	21.6	28.0	6.1	3	2	2	5	5	5	3	AAA	domain
Atg14	PF10186.9	gi|529078900|ref|YP_008377903.1|	-	0.00014	21.1	93.1	0.0082	15.3	13.6	6.0	2	2	4	6	6	6	4	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Fib_alpha	PF08702.10	gi|529078900|ref|YP_008377903.1|	-	0.00025	21.3	6.8	0.00025	21.3	6.8	7.5	3	2	6	10	10	10	2	Fibrinogen	alpha/beta	chain	family
DUF1664	PF07889.12	gi|529078900|ref|YP_008377903.1|	-	0.00026	21.0	78.5	0.084	12.9	3.9	10.0	3	2	7	10	10	10	5	Protein	of	unknown	function	(DUF1664)
CENP-F_leu_zip	PF10473.9	gi|529078900|ref|YP_008377903.1|	-	0.00057	19.9	153.6	0.019	15.0	8.3	8.1	2	2	5	8	8	8	3	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF3584	PF12128.8	gi|529078900|ref|YP_008377903.1|	-	0.0012	16.5	140.9	0.0014	16.3	57.8	4.2	2	2	1	3	3	3	3	Protein	of	unknown	function	(DUF3584)
HAUS-augmin3	PF14932.6	gi|529078900|ref|YP_008377903.1|	-	0.0041	16.7	7.7	0.0041	16.7	7.7	7.9	2	2	6	8	8	8	2	HAUS	augmin-like	complex	subunit	3
DUF3450	PF11932.8	gi|529078900|ref|YP_008377903.1|	-	0.0041	16.5	10.6	0.0041	16.5	10.6	9.3	2	2	6	9	9	9	5	Protein	of	unknown	function	(DUF3450)
DUF5082	PF16888.5	gi|529078900|ref|YP_008377903.1|	-	0.0057	16.9	11.3	0.0057	16.9	11.3	9.3	2	2	4	8	8	8	1	Domain	of	unknown	function	(DUF5082)
Filament	PF00038.21	gi|529078900|ref|YP_008377903.1|	-	0.007	16.0	7.9	0.007	16.0	7.9	6.7	2	2	4	6	6	5	3	Intermediate	filament	protein
TolA_bind_tri	PF16331.5	gi|529078900|ref|YP_008377903.1|	-	0.0071	16.4	4.5	0.0071	16.4	4.5	10.7	5	4	5	10	10	8	2	TolA	binding	protein	trimerisation
DUF724	PF05266.14	gi|529078900|ref|YP_008377903.1|	-	0.0073	16.2	108.1	0.019	14.8	8.2	8.2	3	2	6	9	9	9	4	Protein	of	unknown	function	(DUF724)
APG6_N	PF17675.1	gi|529078900|ref|YP_008377903.1|	-	0.033	14.7	193.5	1.8	9.1	18.3	10.0	2	2	6	8	8	8	0	Apg6	coiled-coil	region
Fez1	PF06818.15	gi|529078900|ref|YP_008377903.1|	-	0.053	14.0	125.6	0.1	13.0	21.2	7.2	2	2	4	6	6	6	0	Fez1
EzrA	PF06160.12	gi|529078900|ref|YP_008377903.1|	-	0.13	10.4	115.9	0.67	8.1	5.2	5.0	2	2	2	4	4	4	0	Septation	ring	formation	regulator,	EzrA
Baculo_PEP_C	PF04513.12	gi|529078900|ref|YP_008377903.1|	-	0.19	11.8	32.6	0.47	10.5	0.1	7.5	4	2	2	7	7	7	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
MscS_porin	PF12795.7	gi|529078900|ref|YP_008377903.1|	-	0.21	11.1	122.3	0.056	13.0	15.2	5.7	3	2	3	6	6	6	0	Mechanosensitive	ion	channel	porin	domain
AAA_23	PF13476.6	gi|529078900|ref|YP_008377903.1|	-	0.96	9.9	142.7	5.5	7.4	66.5	8.2	2	2	2	4	4	2	0	AAA	domain
DUF812	PF05667.11	gi|529078900|ref|YP_008377903.1|	-	1.6	7.5	124.2	0.0084	15.0	25.4	6.1	2	2	2	4	4	4	0	Protein	of	unknown	function	(DUF812)
NPV_P10	PF05531.12	gi|529078900|ref|YP_008377903.1|	-	2.6	8.6	47.6	0.32	11.5	2.2	9.3	4	2	3	7	7	7	0	Nucleopolyhedrovirus	P10	protein
FPP	PF05911.11	gi|529078900|ref|YP_008377903.1|	-	2.7	6.1	115.2	0.65	8.1	15.9	5.3	2	2	3	5	5	5	0	Filament-like	plant	protein,	long	coiled-coil
UPF0242	PF06785.11	gi|529078900|ref|YP_008377903.1|	-	3.9	7.5	145.3	0.023	14.8	18.4	7.6	2	2	4	7	7	6	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
MukB	PF04310.12	gi|529078900|ref|YP_008377903.1|	-	4.3	7.1	5.5	7.3	6.3	0.0	3.6	3	0	0	3	3	2	0	MukB	N-terminal
DUF4407	PF14362.6	gi|529078900|ref|YP_008377903.1|	-	5.3	6.3	119.1	0.11	11.8	20.1	6.6	2	2	4	6	6	6	0	Domain	of	unknown	function	(DUF4407)
GAS	PF13851.6	gi|529078900|ref|YP_008377903.1|	-	7	5.9	122.5	0.016	14.6	19.6	7.9	2	2	6	8	8	8	0	Growth-arrest	specific	micro-tubule	binding
Golgin_A5	PF09787.9	gi|529078900|ref|YP_008377903.1|	-	7.2	6.0	140.9	0.24	10.8	13.3	7.3	2	2	6	8	8	8	0	Golgin	subfamily	A	member	5
SMC_ScpA	PF02616.14	gi|529078901|ref|YP_008377904.1|	-	4.6e-14	52.9	0.0	3.5e-09	36.9	0.0	2.2	2	0	0	2	2	2	2	Segregation	and	condensation	protein	ScpA
MIS13	PF08202.11	gi|529078901|ref|YP_008377904.1|	-	0.099	11.9	0.3	0.14	11.4	0.3	1.2	1	0	0	1	1	1	0	Mis12-Mtw1	protein	family
Mem_trans	PF03547.18	gi|529078903|ref|YP_008377906.1|	-	3.2e-20	71.9	18.6	1.2e-12	46.9	2.9	2.1	1	1	1	2	2	2	2	Membrane	transport	protein
Pribosyltran	PF00156.27	gi|529078905|ref|YP_008377908.1|	-	3e-17	62.6	0.0	4.1e-17	62.2	0.0	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|529078905|ref|YP_008377908.1|	-	0.026	14.0	0.0	0.036	13.5	0.0	1.1	1	0	0	1	1	1	0	Uracil	phosphoribosyltransferase
Pribosyl_synth	PF14572.6	gi|529078905|ref|YP_008377908.1|	-	0.13	12.3	0.0	0.21	11.6	0.0	1.3	1	0	0	1	1	1	0	Phosphoribosyl	synthetase-associated	domain
Abhydrolase_6	PF12697.7	gi|529078906|ref|YP_008377909.1|	-	8.3e-11	42.9	2.2	1.5e-10	42.0	2.2	1.4	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Peptidase_S9	PF00326.21	gi|529078906|ref|YP_008377909.1|	-	2.2e-10	40.4	0.0	4.4e-05	23.1	0.0	2.3	1	1	0	2	2	2	2	Prolyl	oligopeptidase	family
Hydrolase_4	PF12146.8	gi|529078906|ref|YP_008377909.1|	-	3.1e-10	39.7	0.1	8.9e-10	38.2	0.1	1.6	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_5	PF12695.7	gi|529078906|ref|YP_008377909.1|	-	9.5e-06	25.5	0.0	6.4e-05	22.8	0.0	2.2	3	0	0	3	3	3	1	Alpha/beta	hydrolase	family
DLH	PF01738.18	gi|529078906|ref|YP_008377909.1|	-	1.1e-05	25.1	0.0	0.017	14.7	0.0	2.7	2	1	0	2	2	2	2	Dienelactone	hydrolase	family
Abhydrolase_1	PF00561.20	gi|529078906|ref|YP_008377909.1|	-	2.1e-05	24.3	0.1	0.0015	18.2	0.0	2.1	1	1	1	2	2	2	1	alpha/beta	hydrolase	fold
Esterase	PF00756.20	gi|529078906|ref|YP_008377909.1|	-	0.0019	17.9	0.0	0.0044	16.7	0.0	1.5	2	0	0	2	2	2	1	Putative	esterase
GYF_2	PF14237.6	gi|529078906|ref|YP_008377909.1|	-	0.019	14.8	0.1	0.048	13.5	0.1	1.6	1	0	0	1	1	1	0	GYF	domain	2
Thioesterase	PF00975.20	gi|529078906|ref|YP_008377909.1|	-	0.021	15.0	0.1	0.039	14.1	0.1	1.5	1	1	0	1	1	1	0	Thioesterase	domain
Abhydrolase_3	PF07859.13	gi|529078906|ref|YP_008377909.1|	-	0.026	14.4	0.0	0.047	13.5	0.0	1.4	1	0	0	1	1	1	0	alpha/beta	hydrolase	fold
PGAP1	PF07819.13	gi|529078906|ref|YP_008377909.1|	-	0.044	13.5	0.0	0.068	12.9	0.0	1.3	1	0	0	1	1	1	0	PGAP1-like	protein
Lipase_3	PF01764.25	gi|529078906|ref|YP_008377909.1|	-	0.1	12.4	0.0	0.17	11.8	0.0	1.2	1	0	0	1	1	1	0	Lipase	(class	3)
Ser_hydrolase	PF06821.13	gi|529078906|ref|YP_008377909.1|	-	0.22	11.4	0.0	0.4	10.5	0.0	1.4	1	0	0	1	1	1	0	Serine	hydrolase
PhzC-PhzF	PF02567.16	gi|529078907|ref|YP_008377910.1|	-	1.7e-68	231.1	0.0	2e-68	230.9	0.0	1.0	1	0	0	1	1	1	1	Phenazine	biosynthesis-like	protein
DAP_epimerase	PF01678.19	gi|529078907|ref|YP_008377910.1|	-	3.8e-05	23.8	0.2	0.0016	18.6	0.0	2.3	2	0	0	2	2	2	1	Diaminopimelate	epimerase
Pro_racemase	PF05544.11	gi|529078907|ref|YP_008377910.1|	-	0.028	13.5	0.0	0.045	12.8	0.0	1.2	1	0	0	1	1	1	0	Proline	racemase
Pyridoxal_deC	PF00282.19	gi|529078908|ref|YP_008377911.1|	-	8.7e-23	80.6	0.0	2.1e-22	79.4	0.0	1.6	1	1	0	1	1	1	1	Pyridoxal-dependent	decarboxylase	conserved	domain
Aminotran_5	PF00266.19	gi|529078908|ref|YP_008377911.1|	-	5.5e-10	38.7	0.0	6.4e-10	38.5	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.21	gi|529078908|ref|YP_008377911.1|	-	2.4e-07	30.3	0.0	4.8e-07	29.3	0.0	1.5	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|529078908|ref|YP_008377911.1|	-	0.00038	19.8	0.2	0.0016	17.8	0.2	1.7	1	1	0	1	1	1	1	Beta-eliminating	lyase
SHMT	PF00464.19	gi|529078908|ref|YP_008377911.1|	-	0.01	14.5	0.0	0.028	13.0	0.0	1.6	1	1	0	1	1	1	0	Serine	hydroxymethyltransferase
DegT_DnrJ_EryC1	PF01041.17	gi|529078908|ref|YP_008377911.1|	-	0.031	13.6	0.3	0.05	12.9	0.3	1.3	1	0	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
DUF749	PF05370.11	gi|529078908|ref|YP_008377911.1|	-	0.14	12.2	0.0	0.24	11.5	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF749)
SNARE_assoc	PF09335.11	gi|529078909|ref|YP_008377912.1|	-	4.2e-12	46.6	0.8	4.2e-12	46.6	0.8	2.2	1	1	1	2	2	2	1	SNARE	associated	Golgi	protein
NYN	PF01936.18	gi|529078910|ref|YP_008377913.1|	-	3.7e-19	69.7	0.0	4.2e-19	69.5	0.0	1.0	1	0	0	1	1	1	1	NYN	domain
Peripla_BP_1	PF00532.21	gi|529078910|ref|YP_008377913.1|	-	0.0056	16.1	0.0	0.0076	15.7	0.0	1.1	1	0	0	1	1	1	1	Periplasmic	binding	proteins	and	sugar	binding	domain	of	LacI	family
AP_endonuc_2	PF01261.24	gi|529078910|ref|YP_008377913.1|	-	0.035	13.6	0.2	0.18	11.2	0.2	1.8	1	1	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
PIN7	PF18475.1	gi|529078910|ref|YP_008377913.1|	-	0.097	13.3	0.0	0.13	12.9	0.0	1.2	1	0	0	1	1	1	0	PIN	domain
CoA_binding_2	PF13380.6	gi|529078910|ref|YP_008377913.1|	-	0.11	13.0	0.0	0.2	12.2	0.0	1.5	1	1	0	1	1	1	0	CoA	binding	domain
TatD_DNase	PF01026.21	gi|529078911|ref|YP_008377914.1|	-	7e-18	64.9	0.0	4.8e-16	58.9	0.0	2.0	1	1	0	1	1	1	1	TatD	related	DNase
Lactamase_B_3	PF13483.6	gi|529078912|ref|YP_008377915.1|	-	1e-21	77.5	0.1	1.3e-21	77.1	0.1	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|529078912|ref|YP_008377915.1|	-	1.1e-18	67.5	1.8	1.4e-18	67.1	1.8	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|529078912|ref|YP_008377915.1|	-	1.7e-10	41.3	3.6	2.2e-10	40.9	2.8	1.6	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Trypsin_2	PF13365.6	gi|529078913|ref|YP_008377916.1|	-	1.2e-27	97.7	4.3	2.1e-27	96.8	4.3	1.4	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
Trypsin	PF00089.26	gi|529078913|ref|YP_008377916.1|	-	2.7e-11	43.7	0.2	1.2e-10	41.6	0.2	1.9	1	1	0	1	1	1	1	Trypsin
PDZ_2	PF13180.6	gi|529078913|ref|YP_008377916.1|	-	2.3e-09	37.4	0.1	5.3e-09	36.3	0.1	1.6	1	0	0	1	1	1	1	PDZ	domain
TAT_signal	PF10518.9	gi|529078913|ref|YP_008377916.1|	-	0.036	13.9	2.5	0.11	12.4	2.5	1.8	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Peptidase_S46	PF10459.9	gi|529078913|ref|YP_008377916.1|	-	0.35	9.5	0.6	0.54	8.8	0.6	1.2	1	0	0	1	1	1	0	Peptidase	S46
Metal_resist	PF13801.6	gi|529078914|ref|YP_008377917.1|	-	6.2e-05	23.2	4.2	0.00016	21.8	4.0	1.8	1	1	0	1	1	1	1	Heavy-metal	resistance
DUF1525	PF07511.11	gi|529078914|ref|YP_008377917.1|	-	0.0081	16.3	0.1	0.018	15.2	0.1	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1525)
Sld5	PF05916.11	gi|529078914|ref|YP_008377917.1|	-	0.062	13.8	0.3	0.091	13.2	0.3	1.3	1	0	0	1	1	1	0	GINS	complex	protein
DUF3150	PF11348.8	gi|529078914|ref|YP_008377917.1|	-	0.15	11.2	0.4	0.21	10.8	0.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3150)
DNA_primase_S	PF01896.19	gi|529078915|ref|YP_008377918.1|	-	1.3e-23	83.9	0.0	3.6e-23	82.5	0.0	1.7	1	1	0	1	1	1	1	DNA	primase	small	subunit
Acetyltransf_10	PF13673.7	gi|529078916|ref|YP_008377919.1|	-	6.2e-12	45.6	0.2	7.5e-12	45.3	0.2	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|529078916|ref|YP_008377919.1|	-	1.6e-11	44.5	0.2	2.5e-11	43.9	0.2	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|529078916|ref|YP_008377919.1|	-	1e-10	41.9	0.2	1.4e-10	41.5	0.2	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
FR47	PF08445.10	gi|529078916|ref|YP_008377919.1|	-	9.5e-07	28.7	0.0	1.7e-06	27.9	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_4	PF13420.7	gi|529078916|ref|YP_008377919.1|	-	0.0009	19.4	0.2	0.0013	18.9	0.2	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|529078916|ref|YP_008377919.1|	-	0.0046	17.0	0.1	0.013	15.5	0.0	1.8	1	1	1	2	2	2	1	Acetyltransferase	(GNAT)	domain
DUF502	PF04367.13	gi|529078917|ref|YP_008377920.1|	-	1.2e-25	89.4	0.0	1.2e-25	89.4	0.0	1.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF502)
SPC12	PF06645.13	gi|529078917|ref|YP_008377920.1|	-	0.32	11.1	3.9	0.93	9.6	0.4	2.4	2	0	0	2	2	2	0	Microsomal	signal	peptidase	12	kDa	subunit	(SPC12)
ODV-E18	PF10717.9	gi|529078917|ref|YP_008377920.1|	-	2.9	7.8	8.1	0.18	11.7	1.5	2.1	1	1	1	2	2	2	0	Occlusion-derived	virus	envelope	protein	ODV-E18
Archease	PF01951.16	gi|529078918|ref|YP_008377921.1|	-	1.3e-33	116.2	0.0	1.4e-33	116.0	0.0	1.0	1	0	0	1	1	1	1	Archease	protein	family	(MTH1598/TM1083)
peroxidase	PF00141.23	gi|529078919|ref|YP_008377922.1|	-	6.4e-89	297.6	0.0	6e-50	170.1	0.0	2.2	2	0	0	2	2	2	2	Peroxidase
STI1	PF17830.1	gi|529078919|ref|YP_008377922.1|	-	0.033	14.1	0.0	0.089	12.7	0.0	1.7	1	0	0	1	1	1	0	STI1	domain
RtcB	PF01139.17	gi|529078920|ref|YP_008377923.1|	-	8.2e-159	529.2	0.0	9.5e-159	529.0	0.0	1.0	1	0	0	1	1	1	1	tRNA-splicing	ligase	RtcB
VESA1_N	PF12785.7	gi|529078920|ref|YP_008377923.1|	-	0.046	12.7	0.0	0.063	12.2	0.0	1.1	1	0	0	1	1	1	0	Variant	erythrocyte	surface	antigen-1
Pilin_N	PF07790.11	gi|529078921|ref|YP_008377924.1|	-	9e-08	32.9	0.2	1.5e-07	32.2	0.2	1.3	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
FtsX	PF02687.21	gi|529078922|ref|YP_008377925.1|	-	0.56	10.7	7.5	21	5.7	7.4	2.3	1	1	0	1	1	1	0	FtsX-like	permease	family
UPF0236	PF06782.11	gi|529078923|ref|YP_008377926.1|	-	2.3e-06	26.5	0.0	0.00018	20.3	0.0	2.2	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|529078923|ref|YP_008377926.1|	-	0.0028	16.6	0.3	2.8	6.7	0.1	2.8	2	2	0	2	2	2	2	Transposase,	Mutator	family
DDE_Tnp_IS66	PF03050.14	gi|529078923|ref|YP_008377926.1|	-	0.0032	17.0	0.1	0.0046	16.5	0.1	1.2	1	0	0	1	1	1	1	Transposase	IS66	family
MS_channel	PF00924.18	gi|529078924|ref|YP_008377927.1|	-	5e-28	98.1	0.0	6.1e-28	97.8	0.0	1.1	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
DAPG_hydrolase	PF18089.1	gi|529078924|ref|YP_008377927.1|	-	0.2	11.1	0.0	0.32	10.5	0.0	1.4	1	0	0	1	1	1	0	DAPG	hydrolase	PhiG	domain
Dodecin	PF07311.12	gi|529078925|ref|YP_008377928.1|	-	1.3e-20	73.3	0.2	1.5e-20	73.2	0.2	1.0	1	0	0	1	1	1	1	Dodecin
DUF2150	PF09920.9	gi|529078926|ref|YP_008377929.1|	-	1.7e-70	236.8	8.6	2e-70	236.6	8.6	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2150)
Big_1	PF02369.16	gi|529078927|ref|YP_008377930.1|	-	1.8e-11	43.9	29.6	4.4e-08	33.0	1.1	6.6	6	1	1	7	7	7	3	Bacterial	Ig-like	domain	(group	1)
Big_3_3	PF13750.6	gi|529078927|ref|YP_008377930.1|	-	0.0021	17.7	5.7	0.0042	16.8	2.7	2.7	1	1	1	2	2	2	1	Bacterial	Ig-like	domain	(group	3)
Invasin_D3	PF09134.10	gi|529078927|ref|YP_008377930.1|	-	0.0048	17.2	2.4	0.0048	17.2	2.4	5.7	5	2	1	6	6	6	2	Invasin,	domain	3
YtkA	PF13115.6	gi|529078927|ref|YP_008377930.1|	-	0.0067	17.0	0.4	2.4	8.8	0.1	3.9	4	0	0	4	4	4	1	YtkA-like
MG4	PF17789.1	gi|529078927|ref|YP_008377930.1|	-	0.029	14.5	0.1	0.12	12.5	0.1	2.1	1	0	0	1	1	1	0	Macroglobulin	domain	MG4
DUF824	PF05688.11	gi|529078927|ref|YP_008377930.1|	-	0.046	13.6	4.3	1.3	8.9	0.4	3.5	3	0	0	3	3	3	0	Salmonella	repeat	of	unknown	function	(DUF824)
Pilin_N	PF07790.11	gi|529078927|ref|YP_008377930.1|	-	0.11	13.4	4.5	0.4	11.6	0.1	3.5	3	0	0	3	3	3	0	Archaeal	Type	IV	pilin,	N-terminal
GPI-anchored	PF10342.9	gi|529078927|ref|YP_008377930.1|	-	0.48	11.2	8.7	4.3	8.2	0.0	4.7	5	1	0	5	5	5	0	Ser-Thr-rich	glycosyl-phosphatidyl-inositol-anchored	membrane	family
PKD	PF00801.20	gi|529078928|ref|YP_008377931.1|	-	1.8e-38	130.2	50.8	2.4e-13	49.7	4.9	7.4	8	0	0	8	8	8	4	PKD	domain
Pilin_N	PF07790.11	gi|529078928|ref|YP_008377931.1|	-	3.8e-09	37.3	3.3	3.8e-09	37.3	3.3	4.1	3	1	1	5	5	5	1	Archaeal	Type	IV	pilin,	N-terminal
ChitinaseA_N	PF08329.10	gi|529078928|ref|YP_008377931.1|	-	0.0015	18.2	2.7	22	4.7	0.1	5.0	4	1	1	5	5	5	1	Chitinase	A,	N-terminal	domain
Big_3_4	PF13754.6	gi|529078928|ref|YP_008377931.1|	-	0.099	12.4	0.0	7.6	6.3	0.0	2.9	2	0	0	2	2	2	0	Domain	of	unknown	function
Y_Y_Y	PF07495.13	gi|529078928|ref|YP_008377931.1|	-	0.12	12.4	0.2	0.12	12.4	0.2	3.9	3	1	1	4	4	4	0	Y_Y_Y	domain
TcfC	PF16967.5	gi|529078928|ref|YP_008377931.1|	-	0.32	10.5	8.6	0.36	10.3	0.1	4.2	5	0	0	5	5	5	0	E-set	like	domain
DUF4625	PF15418.6	gi|529078928|ref|YP_008377931.1|	-	0.46	10.7	16.3	7.4	6.8	0.1	6.6	6	2	2	8	8	8	0	Domain	of	unknown	function	(DUF4625)
SoxZ	PF08770.11	gi|529078928|ref|YP_008377931.1|	-	6.2	6.7	7.9	12	5.8	0.1	4.6	6	0	0	6	6	6	0	Sulphur	oxidation	protein	SoxZ
HMG_CoA_synt_N	PF01154.17	gi|529078929|ref|YP_008377932.1|	-	1.4e-26	93.5	0.0	2.1e-26	92.9	0.0	1.2	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	synthase	N	terminal
HMG_CoA_synt_C	PF08540.10	gi|529078929|ref|YP_008377932.1|	-	1.6e-18	67.4	0.0	2.8e-18	66.5	0.0	1.3	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	synthase	C	terminal
HTH_3	PF01381.22	gi|529078930|ref|YP_008377933.1|	-	6.6e-08	32.5	0.0	1.7e-07	31.2	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|529078930|ref|YP_008377933.1|	-	5.1e-07	30.0	1.0	2e-06	28.0	0.0	2.3	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|529078930|ref|YP_008377933.1|	-	0.00016	21.7	0.0	0.00034	20.6	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|529078930|ref|YP_008377933.1|	-	0.0022	17.8	0.1	0.022	14.7	0.0	2.4	2	0	0	2	2	2	1	MarR	family
YdjM	PF04307.14	gi|529078931|ref|YP_008377934.1|	-	1.5e-07	30.9	6.0	2e-07	30.4	6.0	1.3	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Wzy_C	PF04932.15	gi|529078931|ref|YP_008377934.1|	-	0.087	12.5	0.2	0.087	12.5	0.2	1.9	2	0	0	2	2	2	0	O-Antigen	ligase
ABC2_membrane_3	PF12698.7	gi|529078932|ref|YP_008377935.1|	-	8.1e-38	130.4	0.0	9.4e-38	130.2	0.0	1.0	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|529078932|ref|YP_008377935.1|	-	1.8e-26	92.9	12.6	3e-25	88.9	8.4	2.2	2	0	0	2	2	2	2	ABC-2	type	transporter
ABC2_membrane_2	PF12679.7	gi|529078932|ref|YP_008377935.1|	-	5.2e-13	48.9	0.7	1e-12	48.0	0.7	1.5	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
CcmB	PF03379.13	gi|529078932|ref|YP_008377935.1|	-	0.034	13.6	10.0	0.063	12.8	6.9	2.3	2	0	0	2	2	2	0	CcmB	protein
ABC2_membrane_4	PF12730.7	gi|529078932|ref|YP_008377935.1|	-	0.051	13.5	4.9	0.12	12.3	1.8	2.3	2	0	0	2	2	2	0	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|529078933|ref|YP_008377936.1|	-	6.8e-30	104.4	0.0	1.1e-29	103.6	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529078933|ref|YP_008377936.1|	-	1.4e-14	54.6	0.0	4.6e-09	36.5	0.0	2.3	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|529078933|ref|YP_008377936.1|	-	7.2e-06	25.9	0.0	0.016	14.9	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.6	gi|529078933|ref|YP_008377936.1|	-	0.0025	18.3	0.0	0.0041	17.7	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|529078933|ref|YP_008377936.1|	-	0.0036	17.0	0.0	0.0074	16.0	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|529078933|ref|YP_008377936.1|	-	0.0052	17.2	0.2	0.018	15.4	0.1	1.9	1	1	1	2	2	2	1	AAA	ATPase	domain
SMC_N	PF02463.19	gi|529078933|ref|YP_008377936.1|	-	0.012	15.1	0.0	0.31	10.5	0.0	2.1	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
HTH_7	PF02796.15	gi|529078933|ref|YP_008377936.1|	-	0.017	15.2	0.0	0.083	13.0	0.0	2.2	2	1	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
SRP54	PF00448.22	gi|529078933|ref|YP_008377936.1|	-	0.023	14.3	0.1	0.036	13.7	0.1	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_33	PF13671.6	gi|529078933|ref|YP_008377936.1|	-	0.054	13.7	0.4	0.11	12.6	0.3	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|529078933|ref|YP_008377936.1|	-	0.078	13.3	0.2	0.24	11.6	0.1	2.0	3	1	0	3	3	2	0	AAA	domain
AAA	PF00004.29	gi|529078933|ref|YP_008377936.1|	-	0.084	13.3	0.2	1.3	9.4	0.2	2.6	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_24	PF13479.6	gi|529078933|ref|YP_008377936.1|	-	0.099	12.4	0.0	0.34	10.6	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_28	PF13521.6	gi|529078933|ref|YP_008377936.1|	-	0.12	12.7	0.6	0.33	11.2	0.1	2.1	3	0	0	3	3	2	0	AAA	domain
AAA_30	PF13604.6	gi|529078933|ref|YP_008377936.1|	-	0.12	12.1	0.4	0.22	11.2	0.2	1.7	2	1	0	2	2	2	0	AAA	domain
Pyr_redox_2	PF07992.14	gi|529078934|ref|YP_008377937.1|	-	5.6e-39	134.1	0.2	6.7e-39	133.9	0.2	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|529078934|ref|YP_008377937.1|	-	2e-09	37.9	0.4	4.1e-07	30.5	0.1	2.5	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|529078934|ref|YP_008377937.1|	-	0.085	12.0	0.2	4.3	6.4	0.1	2.2	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
AlaDh_PNT_C	PF01262.21	gi|529078934|ref|YP_008377937.1|	-	3.6	6.8	6.1	19	4.5	0.0	2.6	3	0	0	3	3	3	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
DUF555	PF04475.12	gi|529078936|ref|YP_008377939.1|	-	1.1e-48	163.7	0.2	1.3e-48	163.5	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF555)
zf-ribbon_3	PF13248.6	gi|529078936|ref|YP_008377939.1|	-	0.034	13.6	0.1	0.059	12.8	0.1	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|529078936|ref|YP_008377939.1|	-	0.066	12.9	0.2	0.1	12.4	0.2	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
CBS	PF00571.28	gi|529078937|ref|YP_008377940.1|	-	2.2e-23	82.4	0.9	4.5e-12	46.2	0.0	2.3	2	0	0	2	2	2	2	CBS	domain
HTH_31	PF13560.6	gi|529078937|ref|YP_008377940.1|	-	3.4e-11	43.3	2.2	8.4e-11	42.1	2.2	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|529078937|ref|YP_008377940.1|	-	6.9e-11	42.0	0.3	1.5e-10	41.0	0.1	1.7	2	0	0	2	2	2	1	Helix-turn-helix
HTH_19	PF12844.7	gi|529078937|ref|YP_008377940.1|	-	4.6e-06	26.6	0.0	7.4e-06	25.9	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_37	PF13744.6	gi|529078937|ref|YP_008377940.1|	-	0.00042	20.2	0.0	0.00091	19.1	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.6	gi|529078937|ref|YP_008377940.1|	-	0.00061	19.6	0.0	0.0012	18.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|529078937|ref|YP_008377940.1|	-	0.028	14.0	0.2	1.5	8.4	0.0	2.6	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
HTH_26	PF13443.6	gi|529078937|ref|YP_008377940.1|	-	0.065	13.7	0.0	0.12	12.8	0.0	1.5	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
Pou	PF00157.17	gi|529078937|ref|YP_008377940.1|	-	0.076	13.0	0.0	0.23	11.5	0.0	1.8	1	1	0	1	1	1	0	Pou	domain	-	N-terminal	to	homeobox	domain
IMS	PF00817.20	gi|529078938|ref|YP_008377941.1|	-	2.1e-41	141.4	0.2	3.3e-41	140.8	0.2	1.3	1	0	0	1	1	1	1	impB/mucB/samB	family
IMS_C	PF11799.8	gi|529078938|ref|YP_008377941.1|	-	7.5e-13	49.2	0.0	1.6e-12	48.2	0.0	1.5	1	0	0	1	1	1	1	impB/mucB/samB	family	C-terminal	domain
IMS_HHH	PF11798.8	gi|529078938|ref|YP_008377941.1|	-	2.3e-06	27.6	0.0	4.4e-06	26.7	0.0	1.5	1	0	0	1	1	1	1	IMS	family	HHH	motif
HHH_5	PF14520.6	gi|529078938|ref|YP_008377941.1|	-	5.6e-06	26.9	0.1	2.5e-05	24.8	0.0	2.2	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
Cdd1	PF11731.8	gi|529078938|ref|YP_008377941.1|	-	6.1e-05	23.2	0.0	0.00013	22.1	0.0	1.5	1	0	0	1	1	1	1	Pathogenicity	locus
DNA_pol_lambd_f	PF10391.9	gi|529078938|ref|YP_008377941.1|	-	0.0002	21.1	0.0	0.00074	19.3	0.0	1.9	2	0	0	2	2	2	1	Fingers	domain	of	DNA	polymerase	lambda
DUF4332	PF14229.6	gi|529078938|ref|YP_008377941.1|	-	0.01	16.1	0.0	0.087	13.1	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4332)
DUF1805	PF08827.11	gi|529078938|ref|YP_008377941.1|	-	0.075	13.4	1.2	6.2	7.2	0.1	3.1	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1805)
RecG_wedge	PF17191.4	gi|529078938|ref|YP_008377941.1|	-	0.25	10.9	0.0	0.4	10.3	0.0	1.3	1	0	0	1	1	1	0	RecG	wedge	domain
DUF87	PF01935.17	gi|529078940|ref|YP_008377943.1|	-	1.1e-11	45.3	0.9	4.3e-11	43.3	0.9	2.0	1	1	0	1	1	1	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|529078940|ref|YP_008377943.1|	-	3.2e-05	22.7	0.2	0.0047	15.6	0.0	2.9	2	1	1	3	3	3	1	Bacterial	protein	of	unknown	function	(DUF853)
APS_kinase	PF01583.20	gi|529078940|ref|YP_008377943.1|	-	0.00013	21.9	0.6	0.011	15.7	0.0	2.7	3	0	0	3	3	2	1	Adenylylsulphate	kinase
Pox_A_type_inc	PF04508.12	gi|529078940|ref|YP_008377943.1|	-	0.0013	18.5	6.0	0.0074	16.1	4.3	2.5	2	0	0	2	2	2	1	Viral	A-type	inclusion	protein	repeat
DUF4515	PF14988.6	gi|529078940|ref|YP_008377943.1|	-	0.0028	17.5	2.2	0.0056	16.5	2.2	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4515)
AAA	PF00004.29	gi|529078940|ref|YP_008377943.1|	-	0.0028	18.1	0.5	0.06	13.8	0.0	2.9	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|529078940|ref|YP_008377943.1|	-	0.0048	17.3	0.0	0.0048	17.3	0.0	2.6	2	1	0	2	2	2	1	AAA	ATPase	domain
HMMR_N	PF15905.5	gi|529078940|ref|YP_008377943.1|	-	0.0054	16.3	2.2	0.0098	15.4	2.2	1.3	1	0	0	1	1	1	1	Hyaluronan	mediated	motility	receptor	N-terminal
DUF4763	PF15960.5	gi|529078940|ref|YP_008377943.1|	-	0.009	15.3	1.1	0.021	14.2	0.7	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4763)
CbiA	PF01656.23	gi|529078940|ref|YP_008377943.1|	-	0.01	15.9	0.0	0.018	15.1	0.0	1.5	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
DUF4407	PF14362.6	gi|529078940|ref|YP_008377943.1|	-	0.015	14.6	2.4	0.021	14.2	1.5	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
Spc29	PF17082.5	gi|529078940|ref|YP_008377943.1|	-	0.02	14.7	0.0	0.032	14.1	0.0	1.2	1	0	0	1	1	1	0	Spindle	Pole	Component	29
Spc24	PF08286.11	gi|529078940|ref|YP_008377943.1|	-	0.031	14.5	2.0	0.078	13.2	2.0	1.8	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
EzrA	PF06160.12	gi|529078940|ref|YP_008377943.1|	-	0.031	12.5	0.9	0.054	11.7	0.9	1.3	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
Fez1	PF06818.15	gi|529078940|ref|YP_008377943.1|	-	0.032	14.7	0.3	0.06	13.8	0.3	1.5	1	0	0	1	1	1	0	Fez1
AAA_18	PF13238.6	gi|529078940|ref|YP_008377943.1|	-	0.037	14.6	0.3	0.14	12.7	0.0	2.1	2	0	0	2	2	1	0	AAA	domain
DLP_helical	PF18709.1	gi|529078940|ref|YP_008377943.1|	-	0.04	13.1	1.2	0.075	12.2	1.2	1.3	1	0	0	1	1	1	0	Dynamin-like	helical	domain
CorA	PF01544.18	gi|529078940|ref|YP_008377943.1|	-	0.052	12.9	2.6	0.093	12.0	2.6	1.4	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
DUF724	PF05266.14	gi|529078940|ref|YP_008377943.1|	-	0.055	13.3	1.8	0.099	12.5	1.8	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
UPF0242	PF06785.11	gi|529078940|ref|YP_008377943.1|	-	0.06	13.4	0.7	0.11	12.6	0.7	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
AGA2	PF17366.2	gi|529078940|ref|YP_008377943.1|	-	0.06	13.1	0.1	0.12	12.1	0.1	1.5	1	0	0	1	1	1	0	A-agglutinin-binding	subunit	Aga2
TrwB_AAD_bind	PF10412.9	gi|529078940|ref|YP_008377943.1|	-	0.062	12.2	0.0	0.16	10.9	0.0	1.7	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
NPV_P10	PF05531.12	gi|529078940|ref|YP_008377943.1|	-	0.063	13.8	0.6	0.26	11.8	0.6	2.1	1	0	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
Atg14	PF10186.9	gi|529078940|ref|YP_008377943.1|	-	0.069	12.2	0.7	0.1	11.6	0.7	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Spc7	PF08317.11	gi|529078940|ref|YP_008377943.1|	-	0.073	11.9	1.9	0.12	11.3	1.9	1.3	1	0	0	1	1	1	0	Spc7	kinetochore	protein
AAA_33	PF13671.6	gi|529078940|ref|YP_008377943.1|	-	0.079	13.1	0.0	0.24	11.6	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
JIP_LZII	PF16471.5	gi|529078940|ref|YP_008377943.1|	-	0.086	13.0	5.8	0.23	11.7	4.6	2.4	3	0	0	3	3	1	0	JNK-interacting	protein	leucine	zipper	II
DUF1664	PF07889.12	gi|529078940|ref|YP_008377943.1|	-	0.11	12.5	0.9	0.26	11.3	0.9	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
RPW8	PF05659.11	gi|529078940|ref|YP_008377943.1|	-	0.12	12.0	0.8	0.27	10.9	0.8	1.4	1	0	0	1	1	1	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Med9	PF07544.13	gi|529078940|ref|YP_008377943.1|	-	0.13	12.4	2.4	0.28	11.3	2.4	1.5	1	0	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
AAA_13	PF13166.6	gi|529078940|ref|YP_008377943.1|	-	0.17	10.5	0.2	0.27	9.8	0.2	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|529078940|ref|YP_008377943.1|	-	0.18	12.1	0.9	1.2	9.5	0.1	2.5	2	1	0	2	2	2	0	AAA	domain
TMF_TATA_bd	PF12325.8	gi|529078940|ref|YP_008377943.1|	-	0.19	12.0	4.8	0.71	10.1	3.9	2.2	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
EcoEI_R_C	PF08463.10	gi|529078940|ref|YP_008377943.1|	-	0.43	10.7	2.9	0.56	10.3	0.6	2.3	3	0	0	3	3	2	0	EcoEI	R	protein	C-terminal
CLZ	PF16526.5	gi|529078940|ref|YP_008377943.1|	-	0.5	10.7	5.5	6.5	7.2	2.7	3.2	3	0	0	3	3	3	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
DivIC	PF04977.15	gi|529078940|ref|YP_008377943.1|	-	1.1	9.1	3.7	3.2	7.6	3.7	1.8	1	0	0	1	1	1	0	Septum	formation	initiator
DUF3552	PF12072.8	gi|529078940|ref|YP_008377943.1|	-	2.1	7.7	9.4	0.4	10.1	5.8	1.6	2	0	0	2	2	1	0	Domain	of	unknown	function	(DUF3552)
OmpH	PF03938.14	gi|529078940|ref|YP_008377943.1|	-	2.1	8.7	5.3	1.7	9.0	2.1	2.4	2	0	0	2	2	2	0	Outer	membrane	protein	(OmpH-like)
APG6_N	PF17675.1	gi|529078940|ref|YP_008377943.1|	-	3.2	8.3	8.0	4.6	7.8	6.9	1.9	1	1	1	2	2	2	0	Apg6	coiled-coil	region
PKcGMP_CC	PF16808.5	gi|529078940|ref|YP_008377943.1|	-	3.7	7.5	6.8	16	5.5	6.7	2.1	1	1	0	1	1	1	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
Pilin_N	PF07790.11	gi|529078941|ref|YP_008377944.1|	-	6.7e-16	59.0	2.7	1.4e-15	58.0	1.0	2.1	1	1	1	2	2	2	1	Archaeal	Type	IV	pilin,	N-terminal
Rhodanese	PF00581.20	gi|529078942|ref|YP_008377945.1|	-	3.7e-29	101.4	0.0	1.4e-15	57.7	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
Lipase_GDSL_3	PF14606.6	gi|529078943|ref|YP_008377946.1|	-	2e-28	99.7	0.0	2.8e-28	99.3	0.0	1.1	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
Lipase_GDSL_2	PF13472.6	gi|529078943|ref|YP_008377946.1|	-	1.9e-13	51.2	0.2	3.1e-13	50.5	0.2	1.3	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
GxDLY	PF14607.6	gi|529078943|ref|YP_008377946.1|	-	0.11	12.3	0.0	0.25	11.1	0.0	1.5	1	0	0	1	1	1	0	N-terminus	of	Esterase_SGNH_hydro-type
ArsP_1	PF03773.13	gi|529078944|ref|YP_008377947.1|	-	1.2e-08	34.5	8.4	1.6e-08	34.1	8.4	1.1	1	0	0	1	1	1	1	Predicted	permease
ArsP_1	PF03773.13	gi|529078945|ref|YP_008377948.1|	-	1.8e-06	27.3	12.2	2.3e-06	27.0	12.2	1.1	1	0	0	1	1	1	1	Predicted	permease
CMD	PF02627.20	gi|529078946|ref|YP_008377949.1|	-	1.9e-08	34.2	0.0	2.1e-08	34.1	0.0	1.1	1	0	0	1	1	1	1	Carboxymuconolactone	decarboxylase	family
DiS_P_DiS	PF06750.13	gi|529078947|ref|YP_008377950.1|	-	0.02	15.0	0.0	0.021	15.0	0.0	1.1	1	0	0	1	1	1	0	Bacterial	Peptidase	A24	N-terminal	domain
Zn-ribbon_8	PF09723.10	gi|529078947|ref|YP_008377950.1|	-	0.021	14.9	0.5	0.19	11.9	0.0	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|529078947|ref|YP_008377950.1|	-	0.21	11.4	0.2	0.21	11.4	0.2	1.7	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
ABC_tran	PF00005.27	gi|529078949|ref|YP_008377952.1|	-	5.9e-31	107.8	0.0	1.1e-30	107.0	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|529078949|ref|YP_008377952.1|	-	6e-14	52.6	0.2	4.5e-09	36.5	0.0	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|529078949|ref|YP_008377952.1|	-	2e-08	34.9	0.0	4.8e-08	33.6	0.0	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_16	PF13191.6	gi|529078949|ref|YP_008377952.1|	-	0.00028	21.3	0.0	0.00077	19.9	0.0	1.7	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|529078949|ref|YP_008377952.1|	-	0.0031	17.3	0.0	0.0044	16.8	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|529078949|ref|YP_008377952.1|	-	0.0032	17.2	0.0	0.4	10.3	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|529078949|ref|YP_008377952.1|	-	0.0043	16.7	0.1	0.0094	15.7	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Rad17	PF03215.15	gi|529078949|ref|YP_008377952.1|	-	0.0053	16.7	0.0	0.0074	16.2	0.0	1.2	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA	PF00004.29	gi|529078949|ref|YP_008377952.1|	-	0.0071	16.8	0.1	0.017	15.5	0.1	1.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
SMC_N	PF02463.19	gi|529078949|ref|YP_008377952.1|	-	0.0077	15.7	0.0	0.43	10.0	0.0	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
SRP54	PF00448.22	gi|529078949|ref|YP_008377952.1|	-	0.012	15.2	0.0	0.019	14.6	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_23	PF13476.6	gi|529078949|ref|YP_008377952.1|	-	0.036	14.6	1.5	0.059	13.9	1.5	1.6	1	1	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|529078949|ref|YP_008377952.1|	-	0.075	12.3	0.0	0.12	11.6	0.0	1.2	1	0	0	1	1	1	0	Zeta	toxin
cobW	PF02492.19	gi|529078949|ref|YP_008377952.1|	-	0.081	12.5	0.1	0.14	11.7	0.1	1.3	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
SbcCD_C	PF13558.6	gi|529078949|ref|YP_008377952.1|	-	0.1	12.8	0.0	0.34	11.2	0.0	2.0	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_18	PF13238.6	gi|529078949|ref|YP_008377952.1|	-	0.11	13.1	0.0	0.22	12.1	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|529078949|ref|YP_008377952.1|	-	0.14	12.4	0.1	0.61	10.4	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|529078949|ref|YP_008377952.1|	-	0.2	11.1	0.0	0.32	10.5	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
ABC2_membrane	PF01061.24	gi|529078950|ref|YP_008377953.1|	-	2e-33	115.6	17.9	2e-33	115.6	17.9	1.4	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|529078950|ref|YP_008377953.1|	-	1.4e-17	63.8	17.3	1.4e-17	63.8	17.3	1.6	1	1	0	2	2	2	1	ABC-2	family	transporter	protein
PAS_4	PF08448.10	gi|529078951|ref|YP_008377954.1|	-	1.5e-22	80.0	5.1	6e-08	32.9	0.0	4.1	3	0	0	3	3	3	3	PAS	fold
GAF_2	PF13185.6	gi|529078951|ref|YP_008377954.1|	-	3.3e-20	72.8	1.0	1.2e-19	71.0	0.5	2.3	2	0	0	2	2	2	1	GAF	domain
Response_reg	PF00072.24	gi|529078951|ref|YP_008377954.1|	-	1.7e-19	70.1	0.0	4.4e-19	68.7	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HATPase_c	PF02518.26	gi|529078951|ref|YP_008377954.1|	-	3.6e-19	69.3	0.0	9.9e-19	67.9	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_8	PF13188.7	gi|529078951|ref|YP_008377954.1|	-	8.2e-13	48.1	0.2	8.4e-06	25.7	0.0	3.6	3	0	0	3	3	3	2	PAS	domain
PAS_9	PF13426.7	gi|529078951|ref|YP_008377954.1|	-	4.3e-10	39.8	0.1	0.027	14.7	0.0	4.1	3	1	0	3	3	3	2	PAS	domain
PAS_7	PF12860.7	gi|529078951|ref|YP_008377954.1|	-	1.9e-08	34.5	0.1	0.005	17.0	0.0	3.3	3	0	0	3	3	3	2	PAS	fold
HisKA	PF00512.25	gi|529078951|ref|YP_008377954.1|	-	2.2e-08	34.0	0.1	2.2e-08	34.0	0.1	3.8	5	0	0	5	5	5	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_3	PF08447.12	gi|529078951|ref|YP_008377954.1|	-	4.1e-08	33.4	0.0	3.1e-06	27.4	0.0	3.4	3	0	0	3	3	3	1	PAS	fold
GAF	PF01590.26	gi|529078951|ref|YP_008377954.1|	-	1.6e-06	28.7	0.0	7.2e-06	26.7	0.0	2.2	1	0	0	1	1	1	1	GAF	domain
PAS	PF00989.25	gi|529078951|ref|YP_008377954.1|	-	4.3e-06	26.7	0.1	0.13	12.2	0.0	4.0	4	0	0	4	4	4	2	PAS	fold
OKR_DC_1_N	PF03709.15	gi|529078951|ref|YP_008377954.1|	-	7.2e-06	26.2	1.1	3.4e-05	24.1	0.0	2.7	4	0	0	4	4	4	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
GAF_3	PF13492.6	gi|529078951|ref|YP_008377954.1|	-	9e-05	22.8	0.0	0.00024	21.4	0.0	1.8	1	0	0	1	1	1	1	GAF	domain
HATPase_c_2	PF13581.6	gi|529078951|ref|YP_008377954.1|	-	0.00044	20.2	2.6	0.00049	20.1	0.2	2.4	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.6	gi|529078951|ref|YP_008377954.1|	-	0.058	13.2	0.0	0.14	11.9	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
EPSP_synthase	PF00275.20	gi|529078952|ref|YP_008377955.1|	-	1.2e-105	353.6	0.3	1.4e-105	353.4	0.3	1.0	1	0	0	1	1	1	1	EPSP	synthase	(3-phosphoshikimate	1-carboxyvinyltransferase)
Cu_amine_oxidN1	PF07833.11	gi|529078952|ref|YP_008377955.1|	-	0.16	12.5	0.0	0.47	11.0	0.0	1.9	1	1	0	1	1	1	0	Copper	amine	oxidase	N-terminal	domain
MutS_V	PF00488.21	gi|529078954|ref|YP_008377957.1|	-	1.2e-80	270.0	0.0	2.1e-80	269.2	0.0	1.4	1	0	0	1	1	1	1	MutS	domain	V
MutS_III	PF05192.18	gi|529078954|ref|YP_008377957.1|	-	1.1e-37	130.1	2.5	1.9e-37	129.4	2.5	1.4	1	0	0	1	1	1	1	MutS	domain	III
MutS_I	PF01624.20	gi|529078954|ref|YP_008377957.1|	-	5.6e-26	91.0	0.0	1.3e-25	89.8	0.0	1.7	1	0	0	1	1	1	1	MutS	domain	I
MutS_II	PF05188.17	gi|529078954|ref|YP_008377957.1|	-	3.3e-24	85.7	0.0	9.2e-24	84.3	0.0	1.8	1	0	0	1	1	1	1	MutS	domain	II
MutS_IV	PF05190.18	gi|529078954|ref|YP_008377957.1|	-	2.2e-23	82.4	0.6	4.9e-23	81.3	0.6	1.6	1	0	0	1	1	1	1	MutS	family	domain	IV
AAA_27	PF13514.6	gi|529078954|ref|YP_008377957.1|	-	0.061	12.9	0.0	0.21	11.2	0.0	1.9	1	0	0	1	1	1	0	AAA	domain
AAA_14	PF13173.6	gi|529078954|ref|YP_008377957.1|	-	0.082	12.9	0.0	0.36	10.9	0.0	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|529078954|ref|YP_008377957.1|	-	0.17	11.7	0.0	0.35	10.7	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
CARDB	PF07705.11	gi|529078955|ref|YP_008377958.1|	-	8e-17	61.4	18.8	6.9e-05	23.1	0.0	5.5	5	1	1	6	6	6	4	CARDB
Big_3_5	PF16640.5	gi|529078955|ref|YP_008377958.1|	-	7.2e-06	26.1	4.5	7.2e-06	26.1	4.5	6.6	5	2	2	7	7	7	3	Bacterial	Ig-like	domain	(group	3)
Cohesin	PF00963.18	gi|529078955|ref|YP_008377958.1|	-	0.0009	19.5	9.8	0.032	14.5	1.2	4.1	4	0	0	4	4	4	2	Cohesin	domain
Cupin_2	PF07883.11	gi|529078957|ref|YP_008377960.1|	-	4.8e-10	39.0	0.8	6.2e-10	38.6	0.8	1.2	1	0	0	1	1	1	1	Cupin	domain
Cupin_3	PF05899.12	gi|529078957|ref|YP_008377960.1|	-	1.7e-05	24.4	0.1	2.8e-05	23.7	0.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
AraC_binding_2	PF14525.6	gi|529078957|ref|YP_008377960.1|	-	0.0016	18.2	0.1	0.0018	18.0	0.1	1.0	1	0	0	1	1	1	1	AraC-binding-like	domain
EutQ	PF06249.12	gi|529078957|ref|YP_008377960.1|	-	0.019	14.7	0.0	0.034	13.9	0.0	1.5	2	0	0	2	2	2	0	Ethanolamine	utilisation	protein	EutQ
Pirin_C_2	PF17954.1	gi|529078957|ref|YP_008377960.1|	-	0.028	14.6	0.0	0.037	14.2	0.0	1.2	1	0	0	1	1	1	0	Quercetinase	C-terminal	cupin	domain
KduI	PF04962.12	gi|529078957|ref|YP_008377960.1|	-	0.055	12.8	0.2	0.066	12.5	0.2	1.3	1	1	0	1	1	1	0	KduI/IolB	family
AIRS_C	PF02769.22	gi|529078958|ref|YP_008377961.1|	-	3.9e-26	92.1	0.2	5.5e-26	91.6	0.2	1.2	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|529078958|ref|YP_008377961.1|	-	1.6e-09	38.3	0.2	4.2e-09	36.9	0.2	1.7	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
Radical_SAM	PF04055.21	gi|529078959|ref|YP_008377962.1|	-	1.3e-16	61.4	0.0	9.6e-16	58.6	0.0	2.1	2	0	0	2	2	2	1	Radical	SAM	superfamily
TF_Zn_Ribbon	PF08271.12	gi|529078959|ref|YP_008377962.1|	-	0.06	12.9	2.0	3	7.5	0.0	2.8	3	0	0	3	3	3	0	TFIIB	zinc-binding
zinc_ribbon_4	PF13717.6	gi|529078959|ref|YP_008377962.1|	-	0.91	9.5	6.6	7.3	6.6	0.3	2.7	3	0	0	3	3	3	0	zinc-ribbon	domain
DUF21	PF01595.20	gi|529078960|ref|YP_008377963.1|	-	2.7e-44	151.0	1.8	4.2e-44	150.3	1.8	1.2	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
CorC_HlyC	PF03471.17	gi|529078960|ref|YP_008377963.1|	-	2.1e-17	62.9	1.1	5.3e-17	61.6	1.1	1.7	1	0	0	1	1	1	1	Transporter	associated	domain
CBS	PF00571.28	gi|529078960|ref|YP_008377963.1|	-	3.8e-10	40.1	10.6	1.1e-06	28.9	1.1	3.2	3	0	0	3	3	3	2	CBS	domain
Ldh_1_N	PF00056.23	gi|529078961|ref|YP_008377964.1|	-	1.1e-43	148.7	0.1	1.7e-43	148.1	0.1	1.2	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	NAD	binding	domain
Ldh_1_C	PF02866.18	gi|529078961|ref|YP_008377964.1|	-	1.5e-34	119.4	0.0	2.1e-34	118.9	0.0	1.2	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	alpha/beta	C-terminal	domain
F420_oxidored	PF03807.17	gi|529078961|ref|YP_008377964.1|	-	1e-05	26.0	0.2	2.3e-05	24.9	0.2	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
UDPG_MGDP_dh_N	PF03721.14	gi|529078961|ref|YP_008377964.1|	-	0.00018	21.1	0.3	0.00073	19.2	0.2	2.0	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|529078961|ref|YP_008377964.1|	-	0.00072	19.8	0.1	0.0014	18.9	0.1	1.5	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
TrkA_N	PF02254.18	gi|529078961|ref|YP_008377964.1|	-	0.00075	19.7	0.3	0.0019	18.5	0.3	1.7	1	0	0	1	1	1	1	TrkA-N	domain
ThiF	PF00899.21	gi|529078961|ref|YP_008377964.1|	-	0.0021	17.4	0.1	0.0038	16.6	0.1	1.3	1	0	0	1	1	1	1	ThiF	family
Shikimate_DH	PF01488.20	gi|529078961|ref|YP_008377964.1|	-	0.0025	17.9	0.0	0.0059	16.7	0.0	1.6	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
DAO	PF01266.24	gi|529078961|ref|YP_008377964.1|	-	0.0047	16.6	1.9	0.0083	15.7	1.0	1.8	1	1	1	2	2	2	1	FAD	dependent	oxidoreductase
NAD_binding_7	PF13241.6	gi|529078961|ref|YP_008377964.1|	-	0.0081	16.6	0.3	0.032	14.7	0.1	2.0	2	0	0	2	2	2	1	Putative	NAD(P)-binding
OCD_Mu_crystall	PF02423.15	gi|529078961|ref|YP_008377964.1|	-	0.012	14.5	0.1	0.021	13.8	0.1	1.3	1	0	0	1	1	1	0	Ornithine	cyclodeaminase/mu-crystallin	family
GFO_IDH_MocA	PF01408.22	gi|529078961|ref|YP_008377964.1|	-	0.015	16.1	0.1	0.026	15.3	0.1	1.4	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
3HCDH_N	PF02737.18	gi|529078961|ref|YP_008377964.1|	-	0.016	15.1	1.3	0.036	14.0	1.3	1.6	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Semialdhyde_dh	PF01118.24	gi|529078961|ref|YP_008377964.1|	-	0.018	15.5	0.0	0.13	12.7	0.1	2.1	2	0	0	2	2	2	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|529078961|ref|YP_008377964.1|	-	0.064	12.9	0.0	0.16	11.6	0.0	1.6	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
zf-HC3	PF16827.5	gi|529078962|ref|YP_008377965.1|	-	0.058	13.6	1.5	0.081	13.1	0.2	1.8	1	1	1	2	2	2	0	zinc-finger
PcrB	PF01884.17	gi|529078963|ref|YP_008377966.1|	-	2.9e-27	95.6	0.1	1.3e-26	93.5	0.1	1.8	1	1	0	1	1	1	1	PcrB	family
His_biosynth	PF00977.21	gi|529078963|ref|YP_008377966.1|	-	6.6e-05	22.5	0.1	0.00017	21.1	0.0	1.7	1	1	1	2	2	2	1	Histidine	biosynthesis	protein
NMO	PF03060.15	gi|529078963|ref|YP_008377966.1|	-	0.033	13.6	0.0	0.053	12.9	0.0	1.3	1	0	0	1	1	1	0	Nitronate	monooxygenase
DUF4491	PF14898.6	gi|529078964|ref|YP_008377967.1|	-	1.7	9.2	4.7	4.3	7.9	0.2	3.2	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4491)
DUF485	PF04341.12	gi|529078965|ref|YP_008377968.1|	-	0.39	10.7	0.1	0.39	10.7	0.1	2.1	2	1	0	2	2	2	0	Protein	of	unknown	function,	DUF485
DUF202	PF02656.15	gi|529078965|ref|YP_008377968.1|	-	3.8	8.0	8.5	7.9	7.0	6.5	2.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF202)
DUF3040	PF11239.8	gi|529078965|ref|YP_008377968.1|	-	6.3	7.1	10.4	9.6	6.6	3.3	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3040)
polyprenyl_synt	PF00348.17	gi|529078967|ref|YP_008377970.1|	-	3e-46	157.6	0.0	4.1e-46	157.1	0.0	1.2	1	0	0	1	1	1	1	Polyprenyl	synthetase
LppA	PF16708.5	gi|529078967|ref|YP_008377970.1|	-	0.049	13.6	0.2	0.088	12.7	0.2	1.3	1	0	0	1	1	1	0	Lipoprotein	confined	to	pathogenic	Mycobacterium
Trp_halogenase	PF04820.14	gi|529078969|ref|YP_008377972.1|	-	2.4e-14	53.1	1.5	1.8e-09	36.9	0.0	2.4	1	1	0	2	2	2	2	Tryptophan	halogenase
DAO	PF01266.24	gi|529078969|ref|YP_008377972.1|	-	2.9e-12	46.9	5.1	1.6e-06	28.0	0.3	2.2	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|529078969|ref|YP_008377972.1|	-	4.4e-12	46.1	6.8	1.9e-11	44.0	6.8	1.9	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|529078969|ref|YP_008377972.1|	-	4.5e-10	39.2	5.2	3.5e-05	23.1	2.3	2.3	2	0	0	2	2	2	2	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|529078969|ref|YP_008377972.1|	-	9.1e-10	38.3	0.9	2.4e-09	36.9	0.9	1.7	1	1	0	1	1	1	1	FAD	binding	domain
GIDA	PF01134.22	gi|529078969|ref|YP_008377972.1|	-	5e-08	32.4	0.7	9.1e-08	31.6	0.7	1.3	1	1	0	1	1	1	1	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|529078969|ref|YP_008377972.1|	-	5.6e-08	31.9	0.4	1.2e-05	24.3	0.2	2.3	2	0	0	2	2	2	2	HI0933-like	protein
Lycopene_cycl	PF05834.12	gi|529078969|ref|YP_008377972.1|	-	4.3e-06	26.0	3.1	3.4e-05	23.1	3.1	2.3	1	1	0	1	1	1	1	Lycopene	cyclase	protein
Pyr_redox_2	PF07992.14	gi|529078969|ref|YP_008377972.1|	-	2.1e-05	23.9	3.2	0.00021	20.6	3.2	2.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|529078969|ref|YP_008377972.1|	-	0.00012	22.2	0.3	0.00042	20.5	0.1	2.0	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
GMC_oxred_N	PF00732.19	gi|529078969|ref|YP_008377972.1|	-	0.00032	20.2	0.2	1	8.7	0.0	3.0	3	0	0	3	3	3	2	GMC	oxidoreductase
Thi4	PF01946.17	gi|529078969|ref|YP_008377972.1|	-	0.0011	18.3	0.6	0.0035	16.6	0.2	1.9	2	0	0	2	2	2	1	Thi4	family
Pyr_redox	PF00070.27	gi|529078969|ref|YP_008377972.1|	-	0.0081	16.7	1.0	0.92	10.1	0.2	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|529078969|ref|YP_008377972.1|	-	0.014	14.7	1.2	0.018	14.3	0.1	1.7	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox_3	PF13738.6	gi|529078969|ref|YP_008377972.1|	-	0.069	12.4	0.2	0.77	9.0	0.1	2.0	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|529078969|ref|YP_008377972.1|	-	0.099	12.5	0.3	0.099	12.5	0.3	2.3	2	1	1	3	3	3	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Aldo_ket_red	PF00248.21	gi|529078970|ref|YP_008377973.1|	-	7.2e-58	196.1	0.0	6.8e-56	189.6	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
Tetraspanin	PF00335.20	gi|529078971|ref|YP_008377974.1|	-	0.016	14.9	1.8	0.023	14.4	1.8	1.2	1	0	0	1	1	1	0	Tetraspanin	family
DUF5391	PF17369.2	gi|529078971|ref|YP_008377974.1|	-	0.19	11.8	5.1	0.036	14.1	1.4	1.7	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5391)
SLATT_fungal	PF18142.1	gi|529078971|ref|YP_008377974.1|	-	0.79	9.7	5.8	2.2	8.3	5.8	1.7	1	0	0	1	1	1	0	SMODS	and	SLOG-associating	2TM	effector	domain
AC_N	PF16214.5	gi|529078971|ref|YP_008377974.1|	-	8	5.5	6.1	9.7	5.2	6.1	1.1	1	0	0	1	1	1	0	Adenylyl	cyclase	N-terminal	extracellular	and	transmembrane	region
DUF63	PF01889.17	gi|529078973|ref|YP_008377976.1|	-	2.2e-35	123.2	16.8	8.9e-35	121.2	12.0	2.9	2	1	0	2	2	2	1	Membrane	protein	of	unknown	function	DUF63
Birna_VP2	PF01766.17	gi|529078973|ref|YP_008377976.1|	-	0.17	10.9	0.0	0.24	10.3	0.0	1.1	1	0	0	1	1	1	0	Birnavirus	VP2	protein
YcaO	PF02624.16	gi|529078974|ref|YP_008377977.1|	-	7.9e-54	183.1	8.4	7.9e-54	183.1	8.4	1.5	1	1	0	1	1	1	1	YcaO	cyclodehydratase,	ATP-ad	Mg2+-binding
TrbH	PF07283.11	gi|529078974|ref|YP_008377977.1|	-	0.069	13.3	0.0	0.17	12.0	0.0	1.6	1	0	0	1	1	1	0	Conjugal	transfer	protein	TrbH
T6SS_VasE	PF05936.12	gi|529078975|ref|YP_008377978.1|	-	0.085	11.5	0.1	0.16	10.6	0.1	1.5	1	0	0	1	1	1	0	Bacterial	Type	VI	secretion,	VC_A0110,	EvfL,	ImpJ,	VasE
SHMT	PF00464.19	gi|529078976|ref|YP_008377979.1|	-	8.6e-151	502.1	0.0	1e-150	501.8	0.0	1.0	1	0	0	1	1	1	1	Serine	hydroxymethyltransferase
Aminotran_1_2	PF00155.21	gi|529078976|ref|YP_008377979.1|	-	6.8e-09	35.3	0.0	1.4e-08	34.3	0.0	1.5	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|529078976|ref|YP_008377979.1|	-	0.00042	19.7	0.0	0.026	13.8	0.0	2.1	1	1	0	1	1	1	1	Beta-eliminating	lyase
AP_endonuc_2	PF01261.24	gi|529078976|ref|YP_008377979.1|	-	0.026	14.0	0.1	1.8	7.9	0.0	2.7	2	1	0	2	2	2	0	Xylose	isomerase-like	TIM	barrel
DegT_DnrJ_EryC1	PF01041.17	gi|529078976|ref|YP_008377979.1|	-	0.13	11.5	0.4	0.19	11.0	0.4	1.2	1	0	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
THF_DHG_CYH_C	PF02882.19	gi|529078977|ref|YP_008377980.1|	-	4.1e-67	224.5	1.5	5.5e-67	224.1	1.5	1.2	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
THF_DHG_CYH	PF00763.23	gi|529078977|ref|YP_008377980.1|	-	8.6e-37	126.0	1.1	1.3e-36	125.4	1.1	1.3	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	catalytic	domain
HypA	PF01155.19	gi|529078978|ref|YP_008377981.1|	-	0.0041	17.1	0.7	0.0087	16.1	0.7	1.5	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|529078978|ref|YP_008377981.1|	-	0.022	14.9	0.9	0.048	13.8	0.9	1.5	1	0	0	1	1	1	0	Zinc	ribbon	domain
FYDLN_acid	PF09538.10	gi|529078978|ref|YP_008377981.1|	-	0.041	14.5	1.8	0.15	12.8	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(FYDLN_acid)
DZR	PF12773.7	gi|529078978|ref|YP_008377981.1|	-	0.045	13.8	0.5	0.093	12.8	0.5	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-IS66	PF13005.7	gi|529078978|ref|YP_008377981.1|	-	0.055	13.9	1.1	1.1	9.7	0.1	2.6	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
DNA_RNApol_7kD	PF03604.13	gi|529078978|ref|YP_008377981.1|	-	0.11	12.2	1.0	0.35	10.6	1.0	1.9	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
DUF1451	PF07295.11	gi|529078978|ref|YP_008377981.1|	-	0.16	12.0	0.3	0.16	12.0	0.3	2.3	3	0	0	3	3	3	0	Zinc-ribbon	containing	domain
zf-ribbon_3	PF13248.6	gi|529078978|ref|YP_008377981.1|	-	0.22	11.0	2.2	4.4	6.9	0.1	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|529078978|ref|YP_008377981.1|	-	0.22	11.0	1.9	0.54	9.8	1.8	1.8	1	1	0	1	1	1	0	TFIIB	zinc-binding
Zn_Tnp_IS1595	PF12760.7	gi|529078978|ref|YP_008377981.1|	-	0.32	11.0	2.9	4.4	7.4	0.1	2.6	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|529078978|ref|YP_008377981.1|	-	0.43	10.5	1.8	1	9.3	1.8	1.6	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
PhnA_Zn_Ribbon	PF08274.12	gi|529078978|ref|YP_008377981.1|	-	0.63	10.1	2.3	1	9.4	2.3	1.3	1	0	0	1	1	1	0	PhnA	Zinc-Ribbon
TFIIS_C	PF01096.18	gi|529078978|ref|YP_008377981.1|	-	1.6	8.6	5.7	8.3	6.4	0.6	2.8	3	0	0	3	3	3	0	Transcription	factor	S-II	(TFIIS)
PadR	PF03551.14	gi|529078979|ref|YP_008377982.1|	-	2.4e-18	65.9	2.0	2.9e-18	65.6	2.0	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DUF1495	PF07381.11	gi|529078979|ref|YP_008377982.1|	-	0.0014	18.4	0.0	0.0022	17.8	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_45	PF14947.6	gi|529078979|ref|YP_008377982.1|	-	0.0099	15.8	0.0	0.013	15.4	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.6	gi|529078979|ref|YP_008377982.1|	-	0.017	15.6	0.1	0.022	15.3	0.1	1.3	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|529078979|ref|YP_008377982.1|	-	0.023	14.6	0.2	1.7	8.6	0.0	2.4	3	0	0	3	3	3	0	MarR	family
DUF4364	PF14277.6	gi|529078979|ref|YP_008377982.1|	-	0.069	12.9	0.0	0.081	12.7	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
HTH_34	PF13601.6	gi|529078979|ref|YP_008377982.1|	-	0.1	12.8	0.0	0.12	12.6	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF4846	PF16138.5	gi|529078980|ref|YP_008377983.1|	-	0.15	11.5	0.0	0.17	11.3	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(4846)
PTCB-BRCT	PF12738.7	gi|529078980|ref|YP_008377983.1|	-	0.19	11.7	0.0	0.64	10.0	0.0	1.7	1	1	1	2	2	2	0	twin	BRCT	domain
HhH-GPD	PF00730.25	gi|529078981|ref|YP_008377984.1|	-	2.6e-16	60.0	0.0	3.9e-16	59.5	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|529078981|ref|YP_008377984.1|	-	1.4e-07	31.0	0.0	3.1e-07	29.9	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
GGDEF_2	PF17853.1	gi|529078981|ref|YP_008377984.1|	-	0.026	14.8	0.1	0.097	12.9	0.0	1.9	2	1	0	2	2	2	0	GGDEF-like	domain
KapB	PF08810.10	gi|529078981|ref|YP_008377984.1|	-	0.05	13.8	0.0	0.11	12.7	0.0	1.5	1	0	0	1	1	1	0	Kinase	associated	protein	B
AbiEi_1	PF09407.10	gi|529078982|ref|YP_008377985.1|	-	8.3e-08	32.7	0.0	1.1e-07	32.3	0.0	1.2	1	0	0	1	1	1	1	AbiEi	antitoxin	C-terminal	domain
AbiEi_4	PF13338.6	gi|529078982|ref|YP_008377985.1|	-	0.00011	22.3	1.4	0.0034	17.5	0.1	2.8	3	0	0	3	3	3	1	Transcriptional	regulator,	AbiEi	antitoxin
AbiEii	PF08843.11	gi|529078983|ref|YP_008377986.1|	-	6.7e-38	131.0	0.3	8.2e-38	130.7	0.3	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase	AbiEii	toxin,	Type	IV	TA	system
ABC_tran	PF00005.27	gi|529078984|ref|YP_008377987.1|	-	5.3e-26	91.8	0.0	8.4e-26	91.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|529078984|ref|YP_008377987.1|	-	0.00047	19.7	0.0	0.0006	19.3	0.0	1.1	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
FMN_red	PF03358.15	gi|529078985|ref|YP_008377988.1|	-	2.6e-33	114.9	0.0	3.2e-33	114.7	0.0	1.1	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.17	gi|529078985|ref|YP_008377988.1|	-	1.4e-10	41.2	0.0	3.1e-10	40.1	0.0	1.5	1	1	0	1	1	1	1	Flavodoxin-like	fold
Flavodoxin_5	PF12724.7	gi|529078985|ref|YP_008377988.1|	-	0.19	11.9	0.0	0.33	11.2	0.0	1.4	1	0	0	1	1	1	0	Flavodoxin	domain
Yip1	PF04893.17	gi|529078986|ref|YP_008377989.1|	-	6.8e-10	38.9	12.6	1.1e-09	38.2	12.6	1.3	1	1	0	1	1	1	1	Yip1	domain
tRNA_anti-codon	PF01336.25	gi|529078987|ref|YP_008377990.1|	-	7.6e-12	45.0	0.3	3.9e-11	42.8	0.2	2.2	2	0	0	2	2	2	1	OB-fold	nucleic	acid	binding	domain
S1	PF00575.23	gi|529078987|ref|YP_008377990.1|	-	1.6e-09	38.0	0.2	6.3e-09	36.0	0.0	2.2	3	0	0	3	3	3	1	S1	RNA	binding	domain
tRNA_anti_2	PF13742.6	gi|529078987|ref|YP_008377990.1|	-	0.00026	21.1	0.0	0.00073	19.7	0.0	1.8	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
S1_2	PF13509.6	gi|529078987|ref|YP_008377990.1|	-	0.01	15.9	0.0	0.026	14.6	0.0	1.7	1	0	0	1	1	1	0	S1	domain
Radical_SAM	PF04055.21	gi|529078988|ref|YP_008377991.1|	-	7.9e-26	91.4	0.1	2e-25	90.1	0.0	1.7	2	0	0	2	2	2	1	Radical	SAM	superfamily
Radical_SAM_C	PF16199.5	gi|529078988|ref|YP_008377991.1|	-	2.9e-23	81.7	0.0	5e-23	80.9	0.0	1.4	1	0	0	1	1	1	1	Radical_SAM	C-terminal	domain
Acetyltransf_1	PF00583.25	gi|529078988|ref|YP_008377991.1|	-	5.1e-07	29.9	0.1	1.2e-06	28.8	0.1	1.6	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|529078988|ref|YP_008377991.1|	-	0.00033	20.6	0.1	0.00067	19.6	0.1	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|529078988|ref|YP_008377991.1|	-	0.14	12.6	0.9	0.29	11.6	0.9	1.5	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
UPF0236	PF06782.11	gi|529078989|ref|YP_008377992.1|	-	2.3e-06	26.5	0.0	0.00018	20.3	0.0	2.2	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|529078989|ref|YP_008377992.1|	-	0.0028	16.6	0.3	2.8	6.7	0.1	2.8	2	2	0	2	2	2	2	Transposase,	Mutator	family
DDE_Tnp_IS66	PF03050.14	gi|529078989|ref|YP_008377992.1|	-	0.0032	17.0	0.1	0.0046	16.5	0.1	1.2	1	0	0	1	1	1	1	Transposase	IS66	family
OmdA	PF13376.6	gi|529078990|ref|YP_008377993.1|	-	0.013	15.5	0.2	0.02	14.9	0.0	1.5	2	0	0	2	2	2	0	Bacteriocin-protection,	YdeI	or	OmpD-Associated
SOP4	PF17081.5	gi|529078990|ref|YP_008377993.1|	-	0.029	13.9	0.0	0.035	13.6	0.0	1.1	1	0	0	1	1	1	0	Suppressor	of	PMA	1-7	protein
Atg29_N	PF18388.1	gi|529078990|ref|YP_008377993.1|	-	0.046	13.5	0.1	0.081	12.8	0.1	1.5	1	1	0	1	1	1	0	Atg29	N-terminal	domain
ZT_dimer	PF16916.5	gi|529078990|ref|YP_008377993.1|	-	0.054	13.6	0.3	0.088	12.9	0.2	1.6	1	1	0	1	1	1	0	Dimerisation	domain	of	Zinc	Transporter
RHH_1	PF01402.21	gi|529078990|ref|YP_008377993.1|	-	0.85	9.7	10.2	0.89	9.6	2.3	3.4	2	2	1	3	3	3	0	Ribbon-helix-helix	protein,	copG	family
FbpA	PF05833.11	gi|529078991|ref|YP_008377994.1|	-	3.3e-84	283.3	0.0	4.2e-84	282.9	0.0	1.1	1	0	0	1	1	1	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
NFACT-R_1	PF05670.13	gi|529078991|ref|YP_008377994.1|	-	1.9e-24	86.4	0.0	3.2e-24	85.7	0.0	1.4	1	0	0	1	1	1	1	NFACT	protein	RNA	binding	domain
NFACT-R_2	PF18297.1	gi|529078991|ref|YP_008377994.1|	-	0.0089	16.2	0.0	0.024	14.8	0.0	1.7	1	0	0	1	1	1	1	NFACT	protein	RNA	binding	domain
Caroten_synth	PF04240.12	gi|529078992|ref|YP_008377995.1|	-	1.6e-15	57.5	27.0	1.6e-15	57.5	27.0	2.0	1	1	1	2	2	2	1	Carotenoid	biosynthesis	protein
eRF1_1	PF03463.15	gi|529078993|ref|YP_008377996.1|	-	3e-28	98.4	0.0	4.5e-28	97.8	0.0	1.3	1	0	0	1	1	1	1	eRF1	domain	1
eRF1_3	PF03465.15	gi|529078993|ref|YP_008377996.1|	-	7.8e-23	81.1	0.0	3.5e-22	79.0	0.0	2.1	2	0	0	2	2	2	1	eRF1	domain	3
eRF1_2	PF03464.15	gi|529078993|ref|YP_008377996.1|	-	2.2e-08	34.5	0.1	8.9e-07	29.3	0.1	2.3	1	1	0	1	1	1	1	eRF1	domain	2
HATPase_c	PF02518.26	gi|529078994|ref|YP_008377997.1|	-	1.1e-11	45.2	0.0	2.2e-11	44.2	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_3	PF13492.6	gi|529078994|ref|YP_008377997.1|	-	1.9e-11	44.4	0.2	3e-11	43.8	0.2	1.3	1	0	0	1	1	1	1	GAF	domain
GAF_2	PF13185.6	gi|529078994|ref|YP_008377997.1|	-	3.2e-06	27.5	0.7	7.8e-06	26.2	0.5	1.8	2	0	0	2	2	2	1	GAF	domain
SPOB_a	PF14689.6	gi|529078994|ref|YP_008377997.1|	-	1e-05	25.2	0.1	2.9e-05	23.7	0.1	1.8	1	0	0	1	1	1	1	Sensor_kinase_SpoOB-type,	alpha-helical	domain
HisKA	PF00512.25	gi|529078994|ref|YP_008377997.1|	-	0.00024	21.1	0.9	0.0005	20.1	0.0	2.1	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HisKA_4TM	PF16926.5	gi|529078994|ref|YP_008377997.1|	-	0.0013	18.3	0.3	0.0021	17.6	0.3	1.3	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
Syntaxin-6_N	PF09177.11	gi|529078994|ref|YP_008377997.1|	-	0.026	15.1	0.8	0.32	11.6	0.1	2.3	2	0	0	2	2	2	0	Syntaxin	6,	N-terminal
Syntaxin_2	PF14523.6	gi|529078994|ref|YP_008377997.1|	-	0.085	13.2	0.0	0.43	11.0	0.0	2.1	1	1	0	1	1	1	0	Syntaxin-like	protein
YnfE	PF17452.2	gi|529078994|ref|YP_008377997.1|	-	0.1	12.9	0.7	0.53	10.6	0.4	2.2	2	0	0	2	2	2	0	Uncharacterized	YnfE-like
Putative_PNPOx	PF01243.20	gi|529078995|ref|YP_008377998.1|	-	1.6e-13	50.6	0.0	2e-13	50.3	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyrid_ox_like	PF16242.5	gi|529078995|ref|YP_008377998.1|	-	5.4e-06	26.1	0.0	6.7e-06	25.7	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase	like
Lactamase_B_2	PF12706.7	gi|529078996|ref|YP_008377999.1|	-	2.5e-21	76.1	1.8	3.1e-21	75.8	1.8	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|529078996|ref|YP_008377999.1|	-	2.3e-10	40.8	4.6	2.3e-10	40.8	4.6	2.0	1	1	1	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.6	gi|529078996|ref|YP_008377999.1|	-	0.071	13.0	0.1	0.14	12.1	0.1	1.5	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
tRNA-synt_1	PF00133.22	gi|529078997|ref|YP_008378000.1|	-	5.8e-60	203.2	0.0	1e-25	90.1	0.1	4.8	1	1	3	4	4	4	4	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1_2	PF13603.6	gi|529078997|ref|YP_008378000.1|	-	6.7e-58	195.3	0.0	1e-57	194.7	0.0	1.3	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1g	PF09334.11	gi|529078997|ref|YP_008378000.1|	-	2.5e-34	118.7	0.0	1.3e-26	93.3	0.0	4.1	4	0	0	4	4	4	2	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.13	gi|529078997|ref|YP_008378000.1|	-	8.7e-11	42.0	0.0	2.4e-10	40.6	0.0	1.8	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1f	PF01921.18	gi|529078997|ref|YP_008378000.1|	-	0.00063	18.8	0.0	0.16	10.8	0.0	3.0	2	1	0	2	2	2	1	tRNA	synthetases	class	I	(K)
DZR	PF12773.7	gi|529078997|ref|YP_008378000.1|	-	0.00075	19.5	3.3	0.22	11.6	0.2	2.5	2	0	0	2	2	2	2	Double	zinc	ribbon
tRNA-synt_1e	PF01406.19	gi|529078997|ref|YP_008378000.1|	-	0.015	14.6	0.0	0.98	8.7	0.0	2.2	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(C)	catalytic	domain
DUF4123	PF13503.6	gi|529078997|ref|YP_008378000.1|	-	0.02	15.3	0.3	0.057	13.8	0.3	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4123)
zinc_ribbon_15	PF17032.5	gi|529078997|ref|YP_008378000.1|	-	0.07	13.9	0.1	23	5.8	0.0	2.5	2	0	0	2	2	2	0	zinc-ribbon	family
IBR	PF01485.21	gi|529078997|ref|YP_008378000.1|	-	0.075	13.3	0.7	0.72	10.1	0.1	2.4	2	1	0	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
DNA_ligase_ZBD	PF03119.16	gi|529078997|ref|YP_008378000.1|	-	0.16	12.1	2.4	0.94	9.6	0.0	3.0	2	1	1	3	3	3	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-ribbon_3	PF13248.6	gi|529078997|ref|YP_008378000.1|	-	0.22	11.0	5.7	5.9	6.4	0.1	3.8	4	0	0	4	4	4	0	zinc-ribbon	domain
CpXC	PF14353.6	gi|529078997|ref|YP_008378000.1|	-	0.42	10.7	2.5	0.55	10.3	0.4	2.3	2	1	0	2	2	2	0	CpXC	protein
Zn-ribbon_8	PF09723.10	gi|529078997|ref|YP_008378000.1|	-	0.54	10.4	8.2	11	6.2	6.2	3.4	2	1	0	2	2	2	0	Zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|529078997|ref|YP_008378000.1|	-	3	7.4	12.5	5.4	6.6	0.3	3.8	4	0	0	4	4	4	0	TFIIB	zinc-binding
TetR_C_6	PF13977.6	gi|529078998|ref|YP_008378001.1|	-	1.3e-13	51.2	2.9	2.9e-13	50.0	2.9	1.6	1	0	0	1	1	1	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|529078998|ref|YP_008378001.1|	-	1.6e-09	37.4	0.3	3.3e-09	36.4	0.3	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
MEDS	PF14417.6	gi|529078998|ref|YP_008378001.1|	-	0.0039	17.0	2.1	0.009	15.8	0.7	2.3	2	1	0	2	2	2	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
TetR_C_24	PF17932.1	gi|529078998|ref|YP_008378001.1|	-	0.0043	17.3	0.2	0.0098	16.1	0.2	1.6	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_27	PF17935.1	gi|529078998|ref|YP_008378001.1|	-	0.12	12.5	2.5	0.14	12.2	0.5	2.3	2	1	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
UPF0236	PF06782.11	gi|529078999|ref|YP_008378002.1|	-	2.3e-06	26.5	0.0	0.00018	20.3	0.0	2.2	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.18	gi|529078999|ref|YP_008378002.1|	-	0.0028	16.6	0.3	2.8	6.7	0.1	2.8	2	2	0	2	2	2	2	Transposase,	Mutator	family
DDE_Tnp_IS66	PF03050.14	gi|529078999|ref|YP_008378002.1|	-	0.0032	17.0	0.1	0.0046	16.5	0.1	1.2	1	0	0	1	1	1	1	Transposase	IS66	family
MMPL	PF03176.15	gi|529079001|ref|YP_008378004.1|	-	3.3e-36	124.9	31.8	7e-26	90.9	10.3	4.4	5	1	1	6	6	6	2	MMPL	family
Sterol-sensing	PF12349.8	gi|529079001|ref|YP_008378004.1|	-	5.5e-12	45.8	6.9	3.8e-06	26.8	0.9	2.5	2	0	0	2	2	2	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
Patched	PF02460.18	gi|529079001|ref|YP_008378004.1|	-	1e-05	23.9	22.2	2e-05	22.9	4.5	2.5	2	1	0	2	2	2	2	Patched	family
SecD_SecF	PF02355.16	gi|529079001|ref|YP_008378004.1|	-	5.5e-05	22.6	19.1	0.00071	19.0	2.3	2.5	2	0	0	2	2	2	2	Protein	export	membrane	protein
FG-GAP	PF01839.23	gi|529079001|ref|YP_008378004.1|	-	0.025	14.7	1.1	0.092	12.9	1.1	2.1	1	0	0	1	1	1	0	FG-GAP	repeat
MAP65_ASE1	PF03999.12	gi|529079001|ref|YP_008378004.1|	-	0.039	12.7	3.6	0.063	12.0	3.6	1.2	1	0	0	1	1	1	0	Microtubule	associated	protein	(MAP65/ASE1	family)
JIP_LZII	PF16471.5	gi|529079001|ref|YP_008378004.1|	-	0.1	12.8	3.7	1.4	9.2	1.0	2.7	2	0	0	2	2	2	0	JNK-interacting	protein	leucine	zipper	II
Spc7	PF08317.11	gi|529079001|ref|YP_008378004.1|	-	0.42	9.5	20.2	0.7	8.7	8.6	2.2	1	1	1	2	2	2	0	Spc7	kinetochore	protein
Atg14	PF10186.9	gi|529079001|ref|YP_008378004.1|	-	0.53	9.3	16.8	0.13	11.3	8.4	2.2	1	1	1	2	2	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF1664	PF07889.12	gi|529079001|ref|YP_008378004.1|	-	0.55	10.3	5.3	0.69	10.0	1.4	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Prominin	PF05478.11	gi|529079001|ref|YP_008378004.1|	-	0.76	7.7	3.4	1.3	6.9	3.4	1.4	1	0	0	1	1	1	0	Prominin
NPV_P10	PF05531.12	gi|529079001|ref|YP_008378004.1|	-	1.4	9.4	9.5	2.3	8.7	0.9	3.5	2	1	1	3	3	3	0	Nucleopolyhedrovirus	P10	protein
APG6_N	PF17675.1	gi|529079001|ref|YP_008378004.1|	-	1.8	9.1	26.9	0.28	11.7	9.4	2.5	2	0	0	2	2	2	0	Apg6	coiled-coil	region
CEP209_CC5	PF16574.5	gi|529079001|ref|YP_008378004.1|	-	2.5	8.3	10.4	1.8	8.7	3.5	2.3	1	1	1	2	2	2	0	Coiled-coil	region	of	centrosome	protein	CE290
Spore_III_AB	PF09548.10	gi|529079001|ref|YP_008378004.1|	-	2.5	8.2	10.7	5.5	7.1	6.3	3.2	2	1	1	3	3	3	0	Stage	III	sporulation	protein	AB	(spore_III_AB)
ZapB	PF06005.12	gi|529079001|ref|YP_008378004.1|	-	3.6	8.1	28.2	5.6	7.5	6.2	4.0	2	2	1	3	3	3	0	Cell	division	protein	ZapB
OmpH	PF03938.14	gi|529079001|ref|YP_008378004.1|	-	6.2	7.2	31.8	3.4	8.0	13.2	2.7	1	1	2	3	3	3	0	Outer	membrane	protein	(OmpH-like)
RseC_MucC	PF04246.12	gi|529079001|ref|YP_008378004.1|	-	9	6.3	8.8	1.7	8.6	1.4	3.0	2	0	0	2	2	2	0	Positive	regulator	of	sigma(E),	RseC/MucC
NTP_transferase	PF00483.23	gi|529079002|ref|YP_008378005.1|	-	4e-39	134.7	0.0	7.1e-39	133.9	0.0	1.4	2	0	0	2	2	2	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|529079002|ref|YP_008378005.1|	-	3.6e-19	69.7	0.3	5.3e-19	69.1	0.3	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|529079002|ref|YP_008378005.1|	-	2.9e-10	39.4	15.0	1.1e-05	24.9	2.3	4.7	3	1	3	6	6	6	4	Bacterial	transferase	hexapeptide	(six	repeats)
IspD	PF01128.19	gi|529079002|ref|YP_008378005.1|	-	0.00056	19.7	0.0	0.00086	19.1	0.0	1.3	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Hexapep_2	PF14602.6	gi|529079002|ref|YP_008378005.1|	-	0.0048	16.6	10.7	0.013	15.2	0.2	3.6	4	0	0	4	4	4	2	Hexapeptide	repeat	of	succinyl-transferase
CTP_transf_3	PF02348.19	gi|529079002|ref|YP_008378005.1|	-	0.059	13.3	0.0	0.089	12.7	0.0	1.2	1	0	0	1	1	1	0	Cytidylyltransferase
DUF4954	PF16314.5	gi|529079002|ref|YP_008378005.1|	-	0.27	9.3	0.1	0.39	8.8	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4954)
tRNA-synt_1g	PF09334.11	gi|529079003|ref|YP_008378006.1|	-	3.8e-135	450.6	0.0	7.2e-135	449.7	0.0	1.5	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(M)
tRNA_bind	PF01588.20	gi|529079003|ref|YP_008378006.1|	-	1.1e-20	73.5	0.1	1.9e-20	72.8	0.1	1.4	1	0	0	1	1	1	1	Putative	tRNA	binding	domain
tRNA-synt_1	PF00133.22	gi|529079003|ref|YP_008378006.1|	-	3.7e-16	58.5	1.0	4.6e-08	31.8	0.2	3.1	2	1	0	2	2	2	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|529079003|ref|YP_008378006.1|	-	6.9e-09	35.8	0.0	1.3e-08	34.9	0.0	1.4	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1e	PF01406.19	gi|529079003|ref|YP_008378006.1|	-	6.6e-08	32.3	0.0	6.7e-05	22.4	0.0	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.18	gi|529079003|ref|YP_008378006.1|	-	0.015	14.2	2.3	0.16	10.9	0.1	2.9	3	1	0	3	3	3	0	tRNA	synthetases	class	I	(K)
tRNA-synt_1d	PF00750.19	gi|529079003|ref|YP_008378006.1|	-	0.02	13.8	0.0	0.13	11.2	0.0	2.1	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(R)
DUF3348	PF11828.8	gi|529079003|ref|YP_008378006.1|	-	0.78	9.4	3.9	0.22	11.2	0.2	2.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3348)
MarR	PF01047.22	gi|529079005|ref|YP_008378008.1|	-	0.00012	21.9	0.0	0.00018	21.4	0.0	1.2	1	0	0	1	1	1	1	MarR	family
B-block_TFIIIC	PF04182.12	gi|529079005|ref|YP_008378008.1|	-	0.0034	17.5	0.0	0.0038	17.3	0.0	1.3	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
MarR_2	PF12802.7	gi|529079005|ref|YP_008378008.1|	-	0.089	12.7	0.0	0.14	12.1	0.0	1.3	1	0	0	1	1	1	0	MarR	family
SBP_bac_6	PF13343.6	gi|529079006|ref|YP_008378009.1|	-	7.8e-16	58.2	0.1	1.9e-15	56.9	0.1	1.5	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.6	gi|529079006|ref|YP_008378009.1|	-	2.6e-15	57.0	2.2	3.6e-15	56.5	2.2	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|529079006|ref|YP_008378009.1|	-	1.3e-09	38.4	3.8	2e-09	37.8	3.8	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|529079006|ref|YP_008378009.1|	-	0.00046	20.0	0.1	0.00082	19.2	0.1	1.5	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|529079006|ref|YP_008378009.1|	-	0.022	14.6	5.0	0.038	13.8	5.0	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.22	gi|529079007|ref|YP_008378010.1|	-	1.6e-26	93.2	30.8	7.6e-16	58.4	11.1	3.2	3	1	1	4	4	4	2	Binding-protein-dependent	transport	system	inner	membrane	component
PsbN	PF02468.15	gi|529079007|ref|YP_008378010.1|	-	9.3	6.2	7.8	11	5.9	0.0	4.0	3	0	0	3	3	3	0	Photosystem	II	reaction	centre	N	protein	(psbN)
ABC_tran	PF00005.27	gi|529079008|ref|YP_008378011.1|	-	6.9e-34	117.3	0.0	1e-33	116.7	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|529079008|ref|YP_008378011.1|	-	2.3e-11	43.7	1.8	1.4e-10	41.2	0.3	3.0	3	0	0	3	3	3	1	TOBE	domain
AAA_21	PF13304.6	gi|529079008|ref|YP_008378011.1|	-	2e-07	31.1	0.0	0.0041	17.0	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
CysA_C_terminal	PF17850.1	gi|529079008|ref|YP_008378011.1|	-	6.8e-05	23.4	1.6	0.0017	18.9	0.0	3.3	3	0	0	3	3	3	1	CysA	C-terminal	regulatory	domain
AAA_16	PF13191.6	gi|529079008|ref|YP_008378011.1|	-	0.0033	17.8	0.7	0.011	16.1	0.7	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|529079008|ref|YP_008378011.1|	-	0.0034	17.8	0.1	0.022	15.2	0.1	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
SMC_N	PF02463.19	gi|529079008|ref|YP_008378011.1|	-	0.0035	16.8	0.0	0.2	11.0	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|529079008|ref|YP_008378011.1|	-	0.0039	17.5	0.2	0.0097	16.2	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.6	gi|529079008|ref|YP_008378011.1|	-	0.0051	16.4	0.7	0.029	13.9	0.7	2.2	1	1	0	1	1	1	1	AAA	domain
Rad17	PF03215.15	gi|529079008|ref|YP_008378011.1|	-	0.0078	16.1	0.0	0.012	15.6	0.0	1.2	1	0	0	1	1	1	1	Rad17	P-loop	domain
TniB	PF05621.11	gi|529079008|ref|YP_008378011.1|	-	0.021	14.2	0.1	0.82	9.0	0.1	2.2	2	0	0	2	2	2	0	Bacterial	TniB	protein
AAA_33	PF13671.6	gi|529079008|ref|YP_008378011.1|	-	0.05	13.8	1.0	0.14	12.4	1.0	1.7	1	1	0	1	1	1	0	AAA	domain
OB_MalK	PF17912.1	gi|529079008|ref|YP_008378011.1|	-	0.055	14.3	0.1	0.76	10.7	0.0	2.8	2	0	0	2	2	2	0	MalK	OB	fold	domain
RsgA_GTPase	PF03193.16	gi|529079008|ref|YP_008378011.1|	-	0.083	12.8	0.0	0.15	12.0	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_30	PF13604.6	gi|529079008|ref|YP_008378011.1|	-	0.099	12.3	0.6	0.23	11.2	0.1	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_28	PF13521.6	gi|529079008|ref|YP_008378011.1|	-	0.11	12.8	0.6	0.11	12.8	0.6	1.7	2	0	0	2	2	2	0	AAA	domain
TOBE	PF03459.17	gi|529079008|ref|YP_008378011.1|	-	0.11	12.8	2.9	0.32	11.3	0.1	3.0	3	1	0	3	3	3	0	TOBE	domain
SRP54	PF00448.22	gi|529079008|ref|YP_008378011.1|	-	0.12	12.0	0.2	0.32	10.6	0.2	1.6	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AIRS_C	PF02769.22	gi|529079009|ref|YP_008378012.1|	-	2.2e-19	70.1	4.1	3.2e-19	69.6	4.1	1.3	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|529079009|ref|YP_008378012.1|	-	1.3e-12	48.2	2.4	1.3e-12	48.2	0.3	2.1	2	0	0	2	2	2	1	AIR	synthase	related	protein,	N-terminal	domain
DUF1611_N	PF17396.2	gi|529079009|ref|YP_008378012.1|	-	0.001	19.2	0.2	0.0038	17.4	0.0	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1611_N)	Rossmann-like	domain
AMP-binding	PF00501.28	gi|529079010|ref|YP_008378013.1|	-	3.9e-79	266.2	0.1	4.5e-79	266.0	0.1	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|529079010|ref|YP_008378013.1|	-	7.6e-18	65.3	1.1	1.6e-17	64.2	1.1	1.6	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
MR_MLE_C	PF13378.6	gi|529079011|ref|YP_008378014.1|	-	1.1e-43	149.4	6.7	1.8e-43	148.7	6.7	1.3	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
FTR	PF01913.18	gi|529079011|ref|YP_008378014.1|	-	0.0034	17.3	0.3	0.013	15.5	0.1	2.0	1	1	1	2	2	2	1	Formylmethanofuran-tetrahydromethanopterin	formyltransferase
MR_MLE_N	PF02746.16	gi|529079011|ref|YP_008378014.1|	-	0.058	13.6	0.9	0.18	12.0	0.1	2.4	2	1	0	2	2	2	0	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
UbiA	PF01040.18	gi|529079012|ref|YP_008378015.1|	-	7e-37	127.1	18.7	7e-37	127.1	18.7	1.4	2	0	0	2	2	2	1	UbiA	prenyltransferase	family
ECH_1	PF00378.20	gi|529079013|ref|YP_008378016.1|	-	1.2e-54	185.3	0.0	2e-54	184.5	0.0	1.3	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|529079013|ref|YP_008378016.1|	-	4.2e-15	56.1	0.0	5.7e-15	55.6	0.0	1.2	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
TrkA_N	PF02254.18	gi|529079014|ref|YP_008378017.1|	-	7.9e-21	74.5	1.7	7.9e-21	74.5	1.7	2.1	2	0	0	2	2	2	1	TrkA-N	domain
DHH	PF01368.20	gi|529079014|ref|YP_008378017.1|	-	9.9e-15	54.6	3.1	6.4e-13	48.8	0.4	2.4	2	0	0	2	2	2	1	DHH	family
Sacchrp_dh_NADP	PF03435.18	gi|529079014|ref|YP_008378017.1|	-	4.8e-08	33.3	2.4	1.4e-07	31.8	0.2	2.8	2	1	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
ApbA	PF02558.16	gi|529079014|ref|YP_008378017.1|	-	8.2e-08	32.0	0.0	4.8e-07	29.5	0.0	2.2	2	1	1	3	3	3	1	Ketopantoate	reductase	PanE/ApbA
F420_oxidored	PF03807.17	gi|529079014|ref|YP_008378017.1|	-	9.5e-07	29.3	1.0	4.9e-06	27.0	0.1	2.6	2	1	1	3	3	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
DHHA1	PF02272.19	gi|529079014|ref|YP_008378017.1|	-	3.7e-06	27.4	0.7	3.1e-05	24.4	0.0	2.5	2	1	0	2	2	2	1	DHHA1	domain
Epimerase	PF01370.21	gi|529079014|ref|YP_008378017.1|	-	3e-05	23.6	1.1	4.4e-05	23.1	0.1	1.8	2	0	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_2	PF03446.15	gi|529079014|ref|YP_008378017.1|	-	3.1e-05	24.2	0.0	6.4e-05	23.2	0.0	1.5	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
IlvN	PF07991.12	gi|529079014|ref|YP_008378017.1|	-	7.8e-05	22.3	0.2	0.00017	21.2	0.2	1.5	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
Shikimate_DH	PF01488.20	gi|529079014|ref|YP_008378017.1|	-	8.5e-05	22.6	0.6	0.00021	21.3	0.1	1.9	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|529079014|ref|YP_008378017.1|	-	0.00011	21.6	0.1	0.00037	19.8	0.1	1.9	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_Gly3P_dh_N	PF01210.23	gi|529079014|ref|YP_008378017.1|	-	0.00088	19.3	0.0	0.0029	17.6	0.0	1.9	1	1	1	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
FAD_binding_3	PF01494.19	gi|529079014|ref|YP_008378017.1|	-	0.0017	17.6	0.0	0.0027	17.0	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|529079014|ref|YP_008378017.1|	-	0.0018	17.9	0.0	0.0041	16.7	0.0	1.7	1	1	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|529079014|ref|YP_008378017.1|	-	0.006	16.0	0.0	0.015	14.7	0.0	1.7	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|529079014|ref|YP_008378017.1|	-	0.0065	16.4	0.0	0.017	15.0	0.0	1.8	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
adh_short_C2	PF13561.6	gi|529079014|ref|YP_008378017.1|	-	0.007	15.9	0.9	0.007	15.9	0.9	2.6	3	0	0	3	3	3	1	Enoyl-(Acyl	carrier	protein)	reductase
NAD_binding_7	PF13241.6	gi|529079014|ref|YP_008378017.1|	-	0.011	16.2	3.3	0.024	15.1	1.1	2.4	1	1	1	2	2	2	0	Putative	NAD(P)-binding
adh_short	PF00106.25	gi|529079014|ref|YP_008378017.1|	-	0.012	15.1	0.3	0.061	12.8	0.1	2.2	2	0	0	2	2	2	0	short	chain	dehydrogenase
NAD_binding_3	PF03447.16	gi|529079014|ref|YP_008378017.1|	-	0.02	15.5	2.0	0.053	14.2	1.0	2.3	1	1	0	1	1	1	0	Homoserine	dehydrogenase,	NAD	binding	domain
XdhC_C	PF13478.6	gi|529079014|ref|YP_008378017.1|	-	0.067	13.7	0.4	0.23	12.0	0.1	2.1	2	0	0	2	2	2	0	XdhC	Rossmann	domain
NAD_binding_8	PF13450.6	gi|529079014|ref|YP_008378017.1|	-	0.077	13.2	0.0	0.18	12.0	0.0	1.6	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
Y1_Tnp	PF01797.16	gi|529079015|ref|YP_008378018.1|	-	2e-37	128.0	0.0	2.3e-37	127.8	0.0	1.0	1	0	0	1	1	1	1	Transposase	IS200	like
OrfB_Zn_ribbon	PF07282.11	gi|529079016|ref|YP_008378019.1|	-	1.9e-24	85.4	0.4	3.4e-24	84.5	0.4	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
zf-HC5HC2H_2	PF13832.6	gi|529079016|ref|YP_008378019.1|	-	0.057	13.6	0.0	0.11	12.7	0.0	1.4	1	0	0	1	1	1	0	PHD-zinc-finger	like	domain
MarR_2	PF12802.7	gi|529079017|ref|YP_008378020.1|	-	8.9e-08	31.9	0.0	1.3e-07	31.4	0.0	1.2	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|529079017|ref|YP_008378020.1|	-	9.5e-06	25.4	0.0	1.5e-05	24.8	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|529079017|ref|YP_008378020.1|	-	1.5e-05	24.7	0.0	2.9e-05	23.8	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|529079017|ref|YP_008378020.1|	-	0.00051	20.3	0.0	0.00074	19.8	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_Crp_2	PF13545.6	gi|529079017|ref|YP_008378020.1|	-	0.0035	17.3	0.0	0.0043	17.0	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
MarR	PF01047.22	gi|529079017|ref|YP_008378020.1|	-	0.0071	16.3	0.0	0.011	15.7	0.0	1.3	1	0	0	1	1	1	1	MarR	family
Sulfolobus_pRN	PF05584.11	gi|529079017|ref|YP_008378020.1|	-	0.014	15.4	0.0	0.017	15.2	0.0	1.2	1	0	0	1	1	1	0	Sulfolobus	plasmid	regulatory	protein
HTH_20	PF12840.7	gi|529079017|ref|YP_008378020.1|	-	0.015	15.4	0.0	0.019	15.0	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|529079017|ref|YP_008378020.1|	-	0.025	15.1	0.0	0.034	14.7	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|529079017|ref|YP_008378020.1|	-	0.041	13.5	0.0	0.06	12.9	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF1028	PF06267.12	gi|529079019|ref|YP_008378022.1|	-	1.8e-63	213.9	0.1	2.1e-63	213.6	0.1	1.1	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF1028)
ELFV_dehydrog	PF00208.21	gi|529079020|ref|YP_008378023.1|	-	2.5e-69	233.7	0.1	3.3e-69	233.3	0.1	1.1	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.18	gi|529079020|ref|YP_008378023.1|	-	7e-55	184.4	0.0	1.1e-54	183.7	0.0	1.4	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.19	gi|529079020|ref|YP_008378023.1|	-	0.005	16.2	0.5	0.032	13.6	0.0	2.2	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Oxidored_nitro	PF00148.19	gi|529079020|ref|YP_008378023.1|	-	0.0075	15.0	0.1	0.012	14.4	0.1	1.2	1	0	0	1	1	1	1	Nitrogenase	component	1	type	Oxidoreductase
Polyketide_cyc2	PF10604.9	gi|529079021|ref|YP_008378024.1|	-	2.9e-10	40.6	1.5	3.2e-10	40.4	1.5	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc	PF03364.20	gi|529079021|ref|YP_008378024.1|	-	1.1e-08	35.4	0.0	1.4e-08	35.0	0.0	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
EamA	PF00892.20	gi|529079022|ref|YP_008378025.1|	-	1.4e-31	109.5	32.0	1.3e-16	61.1	9.8	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
TPT	PF03151.16	gi|529079022|ref|YP_008378025.1|	-	1.7	7.9	12.6	0.5	9.7	4.7	2.1	2	0	0	2	2	2	0	Triose-phosphate	Transporter	family
RIO1	PF01163.22	gi|529079023|ref|YP_008378026.1|	-	4.3e-10	39.5	0.0	7.2e-10	38.8	0.0	1.2	1	0	0	1	1	1	1	RIO1	family
Pkinase	PF00069.25	gi|529079023|ref|YP_008378026.1|	-	6.7e-05	22.4	0.0	7.9e-05	22.2	0.0	1.1	1	0	0	1	1	1	1	Protein	kinase	domain
APH	PF01636.23	gi|529079023|ref|YP_008378026.1|	-	0.00011	22.2	0.7	0.23	11.3	0.2	2.2	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Kdo	PF06293.14	gi|529079023|ref|YP_008378026.1|	-	0.0012	18.2	0.0	0.0035	16.7	0.0	1.7	1	1	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
APH_6_hur	PF04655.14	gi|529079023|ref|YP_008378026.1|	-	0.06	12.7	0.1	0.22	10.8	0.1	1.7	1	1	1	2	2	2	0	Aminoglycoside/hydroxyurea	antibiotic	resistance	kinase
WaaY	PF06176.11	gi|529079023|ref|YP_008378026.1|	-	0.063	12.9	0.0	0.094	12.3	0.0	1.2	1	0	0	1	1	1	0	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
Kinase-PolyVal	PF18762.1	gi|529079023|ref|YP_008378026.1|	-	0.1	12.5	0.0	0.17	11.8	0.0	1.2	1	0	0	1	1	1	0	Serine/Threonine/Tyrosine	Kinase	found	in	polyvalent	proteins
Acetyltransf_3	PF13302.7	gi|529079024|ref|YP_008378027.1|	-	9.7e-27	94.3	0.0	1.1e-26	94.1	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|529079024|ref|YP_008378027.1|	-	9.5e-12	45.2	0.0	1.3e-11	44.8	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_4	PF13420.7	gi|529079024|ref|YP_008378027.1|	-	3.2e-11	43.6	0.0	3.8e-11	43.4	0.0	1.0	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.6	gi|529079024|ref|YP_008378027.1|	-	2.4e-06	27.3	0.0	0.0013	18.4	0.0	2.1	2	0	0	2	2	2	2	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|529079024|ref|YP_008378027.1|	-	4.7e-05	23.3	0.0	6.6e-05	22.9	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|529079024|ref|YP_008378027.1|	-	0.0046	16.9	0.0	0.011	15.7	0.0	1.6	2	0	0	2	2	2	1	FR47-like	protein
Acetyltransf_7	PF13508.7	gi|529079024|ref|YP_008378027.1|	-	0.0087	16.5	0.1	0.014	15.8	0.1	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
HhH-GPD	PF00730.25	gi|529079025|ref|YP_008378028.1|	-	2.3e-22	79.5	0.0	3e-22	79.1	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|529079025|ref|YP_008378028.1|	-	3.6e-11	42.3	0.0	1.4e-10	40.4	0.0	2.1	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|529079025|ref|YP_008378028.1|	-	0.00019	22.0	0.0	0.0051	17.4	0.0	2.4	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
EndIII_4Fe-2S	PF10576.9	gi|529079025|ref|YP_008378028.1|	-	0.0083	16.4	5.7	0.016	15.6	5.7	1.4	1	0	0	1	1	1	1	Iron-sulfur	binding	domain	of	endonuclease	III
5_3_exonuc	PF01367.20	gi|529079025|ref|YP_008378028.1|	-	0.0088	16.6	0.0	0.018	15.6	0.0	1.5	1	0	0	1	1	1	1	5'-3'	exonuclease,	C-terminal	SAM	fold
IMS_HHH	PF11798.8	gi|529079025|ref|YP_008378028.1|	-	0.064	13.6	0.0	0.15	12.4	0.0	1.6	1	0	0	1	1	1	0	IMS	family	HHH	motif
HHH_8	PF14716.6	gi|529079025|ref|YP_008378028.1|	-	0.11	12.9	0.0	0.29	11.6	0.0	1.7	1	1	0	1	1	1	0	Helix-hairpin-helix	domain
DUF3464	PF11947.8	gi|529079026|ref|YP_008378029.1|	-	0.051	13.3	0.8	0.077	12.7	0.8	1.4	1	0	0	1	1	1	0	Photosynthesis	affected	mutant	68
Copper-bind	PF00127.20	gi|529079029|ref|YP_008378032.1|	-	5.6e-13	49.2	0.1	2.2e-12	47.2	0.1	1.9	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
TAT_signal	PF10518.9	gi|529079029|ref|YP_008378032.1|	-	0.00092	19.0	10.3	0.0037	17.1	10.3	2.1	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Rieske	PF00355.26	gi|529079031|ref|YP_008378034.1|	-	0.00022	21.1	0.0	0.00041	20.2	0.0	1.4	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Cytochrome_B	PF00033.19	gi|529079032|ref|YP_008378035.1|	-	4.1e-44	150.7	14.7	7e-44	149.9	14.7	1.3	1	0	0	1	1	1	1	Cytochrome	b/b6/petB
Cytochrom_B_N_2	PF13631.6	gi|529079032|ref|YP_008378035.1|	-	2.6e-41	141.5	8.7	4.3e-41	140.7	7.9	1.7	2	0	0	2	2	2	1	Cytochrome	b(N-terminal)/b6/petB
DUF4405	PF14358.6	gi|529079032|ref|YP_008378035.1|	-	0.00084	19.8	2.1	0.00084	19.8	2.1	2.9	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4405)
DUF373	PF04123.13	gi|529079032|ref|YP_008378035.1|	-	0.0019	17.7	1.6	0.0027	17.2	1.4	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
Ni_hydr_CYTB	PF01292.20	gi|529079032|ref|YP_008378035.1|	-	0.038	13.6	19.1	0.12	11.9	4.6	2.2	1	1	1	2	2	2	0	Prokaryotic	cytochrome	b561
Cytochrom_B_C	PF00032.17	gi|529079033|ref|YP_008378036.1|	-	9.2e-09	35.5	0.2	1.7e-08	34.7	0.2	1.5	1	0	0	1	1	1	1	Cytochrome	b(C-terminal)/b6/petD
DUF2214	PF09980.9	gi|529079033|ref|YP_008378036.1|	-	0.066	13.0	0.2	0.13	12.1	0.2	1.4	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2214)
DUF2723	PF11028.8	gi|529079034|ref|YP_008378037.1|	-	0.013	15.4	0.2	0.016	15.1	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2723)
DUF308	PF03729.13	gi|529079034|ref|YP_008378037.1|	-	0.044	14.1	4.4	0.063	13.6	4.4	1.2	1	0	0	1	1	1	0	Short	repeat	of	unknown	function	(DUF308)
NAD_kinase	PF01513.21	gi|529079037|ref|YP_008378040.1|	-	2.1e-08	33.7	2.3	3.4e-08	33.0	2.2	1.4	2	0	0	2	2	2	1	ATP-NAD	kinase
Copper-bind	PF00127.20	gi|529079038|ref|YP_008378041.1|	-	8.3e-15	55.0	0.1	3.1e-14	53.2	0.1	1.8	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
TAT_signal	PF10518.9	gi|529079038|ref|YP_008378041.1|	-	1.6	8.7	18.4	0.12	12.2	12.5	2.4	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Pilin_N	PF07790.11	gi|529079039|ref|YP_008378042.1|	-	2.8e-25	89.0	2.3	4.7e-25	88.3	2.3	1.4	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
PALP	PF00291.25	gi|529079040|ref|YP_008378043.1|	-	5.4e-44	150.8	1.2	7e-44	150.4	1.2	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
DFP	PF04127.15	gi|529079041|ref|YP_008378044.1|	-	2.9e-44	151.1	3.4	4.8e-43	147.1	0.5	2.2	2	0	0	2	2	2	2	DNA	/	pantothenate	metabolism	flavoprotein
Flavoprotein	PF02441.19	gi|529079041|ref|YP_008378044.1|	-	3.3e-32	111.4	0.4	5.3e-32	110.7	0.4	1.3	1	0	0	1	1	1	1	Flavoprotein
PALP	PF00291.25	gi|529079041|ref|YP_008378044.1|	-	0.1	12.0	5.7	0.8	9.0	0.3	2.6	1	1	0	2	2	2	0	Pyridoxal-phosphate	dependent	enzyme
Peripla_BP_4	PF13407.6	gi|529079041|ref|YP_008378044.1|	-	0.11	12.1	2.9	8.2	5.9	0.0	3.2	2	1	1	3	3	3	0	Periplasmic	binding	protein	domain
Glyco_trans_4_4	PF13579.6	gi|529079041|ref|YP_008378044.1|	-	3.9	7.9	9.1	2.8	8.3	2.3	3.2	2	2	0	2	2	2	0	Glycosyl	transferase	4-like	domain
PhaG_MnhG_YufB	PF03334.14	gi|529079042|ref|YP_008378045.1|	-	1.3e-24	86.2	8.7	1.6e-24	85.9	8.7	1.1	1	0	0	1	1	1	1	Na+/H+	antiporter	subunit
MrpF_PhaF	PF04066.13	gi|529079043|ref|YP_008378046.1|	-	6.1e-17	61.8	9.8	6.1e-17	61.8	9.8	2.3	2	1	0	2	2	2	1	Multiple	resistance	and	pH	regulation	protein	F	(MrpF	/	PhaF)
DUF4006	PF13179.6	gi|529079043|ref|YP_008378046.1|	-	7.2	6.6	6.2	15	5.6	5.9	1.7	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF4006)
MNHE	PF01899.16	gi|529079044|ref|YP_008378047.1|	-	2.1e-39	134.6	0.9	2.4e-39	134.4	0.9	1.0	1	0	0	1	1	1	1	Na+/H+	ion	antiporter	subunit
Proton_antipo_M	PF00361.20	gi|529079045|ref|YP_008378048.1|	-	1.4e-52	178.7	17.8	1.4e-52	178.7	17.8	2.9	1	1	1	2	2	2	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|529079045|ref|YP_008378048.1|	-	0.00071	19.6	0.4	0.00071	19.6	0.4	2.8	3	0	0	3	3	3	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
NADHdeh_related	PF10125.9	gi|529079045|ref|YP_008378048.1|	-	0.00088	18.7	5.6	0.00088	18.7	5.6	2.8	2	1	0	2	2	2	1	NADH	dehydrogenase	I,	subunit	N	related	protein
Oxidored_q2	PF00420.24	gi|529079046|ref|YP_008378049.1|	-	5e-30	103.2	2.0	6e-30	103.0	2.0	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
MnhB	PF04039.13	gi|529079047|ref|YP_008378050.1|	-	5.5e-32	110.7	13.3	1.6e-31	109.2	13.3	1.6	1	1	0	1	1	1	1	Domain	related	to	MnhB	subunit	of	Na+/H+	antiporter
DUF5313	PF17240.2	gi|529079047|ref|YP_008378050.1|	-	0.085	13.3	0.0	0.12	12.8	0.0	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5313)
Phage_holin_3_6	PF07332.11	gi|529079047|ref|YP_008378050.1|	-	5.2	7.1	17.9	1.3	9.1	9.5	2.1	2	0	0	2	2	2	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Proton_antipo_M	PF00361.20	gi|529079048|ref|YP_008378051.1|	-	3.7e-67	226.6	15.1	3.7e-67	226.6	15.1	2.6	2	0	0	2	2	2	1	Proton-conducting	membrane	transporter
DUF4040	PF13244.6	gi|529079048|ref|YP_008378051.1|	-	2e-17	63.1	10.2	2e-17	63.1	10.2	5.0	4	0	0	4	4	4	1	Domain	of	unknown	function	(DUF4040)
Proton_antipo_N	PF00662.20	gi|529079048|ref|YP_008378051.1|	-	1e-12	47.9	0.1	1e-12	47.9	0.1	3.4	4	0	0	4	4	4	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Oxidored_q3	PF00499.20	gi|529079048|ref|YP_008378051.1|	-	0.00027	20.7	7.5	0.00027	20.7	7.5	4.5	3	1	0	3	3	3	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
DUF3918	PF13056.6	gi|529079048|ref|YP_008378051.1|	-	0.1	12.2	0.4	0.46	10.1	0.4	2.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3918)
Pribosyltran	PF00156.27	gi|529079049|ref|YP_008378052.1|	-	2.1e-16	59.9	4.5	3.4e-16	59.1	4.5	1.3	1	1	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|529079049|ref|YP_008378052.1|	-	0.0027	17.2	0.1	0.0037	16.7	0.1	1.3	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Acetyltransf_1	PF00583.25	gi|529079050|ref|YP_008378053.1|	-	5.9e-18	65.2	0.0	6.8e-18	65.0	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|529079050|ref|YP_008378053.1|	-	1.3e-09	38.0	0.0	1.6e-09	37.8	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|529079050|ref|YP_008378053.1|	-	4.3e-09	36.7	0.0	5.8e-09	36.3	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
PanZ	PF12568.8	gi|529079050|ref|YP_008378053.1|	-	0.00037	20.2	0.0	0.00046	19.9	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain,	PanZ
Acetyltransf_8	PF13523.6	gi|529079050|ref|YP_008378053.1|	-	0.0014	18.3	0.0	0.0021	17.7	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|529079050|ref|YP_008378053.1|	-	0.0048	17.0	0.0	0.0058	16.8	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|529079050|ref|YP_008378053.1|	-	0.062	13.4	0.0	0.084	13.0	0.0	1.3	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
FUN14	PF04930.15	gi|529079051|ref|YP_008378054.1|	-	3.4e-22	78.7	6.6	4.1e-22	78.4	6.6	1.1	1	0	0	1	1	1	1	FUN14	family
Cu	PF17563.2	gi|529079051|ref|YP_008378054.1|	-	3.4	7.9	6.6	4.3	7.6	1.0	2.3	2	0	0	2	2	2	0	Cupiennin
TFIIB	PF00382.19	gi|529079052|ref|YP_008378055.1|	-	7.8e-41	138.0	0.2	2.1e-20	72.6	0.1	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|529079052|ref|YP_008378055.1|	-	4.9e-18	64.4	5.7	9.3e-18	63.5	5.7	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
zf-RRN7	PF11781.8	gi|529079052|ref|YP_008378055.1|	-	0.00084	19.0	2.1	0.0014	18.3	2.1	1.3	1	0	0	1	1	1	1	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
HTH_24	PF13412.6	gi|529079052|ref|YP_008378055.1|	-	0.0019	17.7	0.1	0.0044	16.5	0.1	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
A2L_zn_ribbon	PF08792.10	gi|529079052|ref|YP_008378055.1|	-	0.0021	17.7	0.6	0.0038	16.9	0.6	1.5	1	0	0	1	1	1	1	A2L	zinc	ribbon	domain
Cyclin_C	PF02984.19	gi|529079052|ref|YP_008378055.1|	-	0.0024	18.0	0.0	0.03	14.4	0.0	2.1	2	0	0	2	2	2	1	Cyclin,	C-terminal	domain
HTH_AsnC-type	PF13404.6	gi|529079052|ref|YP_008378055.1|	-	0.012	15.5	0.5	0.071	13.0	0.1	2.6	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
DZR	PF12773.7	gi|529079052|ref|YP_008378055.1|	-	0.018	15.1	0.3	0.03	14.4	0.3	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|529079052|ref|YP_008378055.1|	-	0.034	13.6	3.0	0.47	9.9	3.2	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
Sigma70_r4	PF04545.16	gi|529079052|ref|YP_008378055.1|	-	0.047	13.2	4.0	0.13	11.8	0.1	3.3	3	0	0	3	3	3	0	Sigma-70,	region	4
OrfB_Zn_ribbon	PF07282.11	gi|529079052|ref|YP_008378055.1|	-	0.058	13.3	0.8	0.12	12.4	0.8	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn-ribbon_8	PF09723.10	gi|529079052|ref|YP_008378055.1|	-	0.086	13.0	4.1	0.41	10.8	0.4	2.4	1	1	1	2	2	2	0	Zinc	ribbon	domain
DUF1272	PF06906.11	gi|529079052|ref|YP_008378055.1|	-	0.14	12.3	0.4	0.29	11.3	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1272)
Auto_anti-p27	PF06677.12	gi|529079052|ref|YP_008378055.1|	-	0.19	11.9	1.6	0.33	11.1	1.6	1.4	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-C4_Topoisom	PF01396.19	gi|529079052|ref|YP_008378055.1|	-	0.29	11.0	1.8	0.26	11.1	0.6	1.6	1	1	0	1	1	1	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf_UBZ	PF18439.1	gi|529079052|ref|YP_008378055.1|	-	0.61	9.7	3.3	6.2	6.5	0.2	2.3	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Nudix_N_2	PF14803.6	gi|529079052|ref|YP_008378055.1|	-	0.93	9.5	2.7	3.4	7.7	2.7	2.0	1	1	0	1	1	1	0	Nudix	N-terminal
zinc_ribbon_9	PF14369.6	gi|529079052|ref|YP_008378055.1|	-	4.3	7.7	4.8	1.4	9.2	0.9	2.1	1	1	1	2	2	2	0	zinc-ribbon
DUF357	PF04010.13	gi|529079053|ref|YP_008378056.1|	-	2.9e-32	110.6	0.1	3.3e-32	110.4	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF357)
AMMECR1	PF01871.17	gi|529079054|ref|YP_008378057.1|	-	1e-49	168.4	0.0	1.2e-49	168.2	0.0	1.0	1	0	0	1	1	1	1	AMMECR1
MutS_V	PF00488.21	gi|529079055|ref|YP_008378058.1|	-	1.5e-08	34.9	0.0	2.7e-08	34.1	0.0	1.4	1	0	0	1	1	1	1	MutS	domain	V
AAA_28	PF13521.6	gi|529079055|ref|YP_008378058.1|	-	0.0003	21.0	0.7	0.00096	19.4	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_21	PF13304.6	gi|529079055|ref|YP_008378058.1|	-	0.0011	18.8	0.0	0.003	17.4	0.0	1.7	2	0	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
HHH_5	PF14520.6	gi|529079055|ref|YP_008378058.1|	-	0.0047	17.5	1.3	1.9	9.1	0.1	3.2	2	1	0	2	2	2	1	Helix-hairpin-helix	domain
AAA_14	PF13173.6	gi|529079055|ref|YP_008378058.1|	-	0.03	14.4	0.0	0.054	13.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
DUF4232	PF14016.6	gi|529079055|ref|YP_008378058.1|	-	0.042	14.0	0.1	0.12	12.5	0.1	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4232)
Ferredoxin_N	PF16947.5	gi|529079055|ref|YP_008378058.1|	-	0.081	13.1	0.7	0.66	10.1	0.6	2.5	2	0	0	2	2	2	0	N-terminal	region	of	4Fe-4S	ferredoxin	iron-sulfur	binding
IMS_HHH	PF11798.8	gi|529079055|ref|YP_008378058.1|	-	0.11	12.9	0.0	0.29	11.5	0.0	1.8	1	0	0	1	1	1	0	IMS	family	HHH	motif
Apolipoprotein	PF01442.18	gi|529079055|ref|YP_008378058.1|	-	0.24	11.3	6.6	0.95	9.3	6.3	2.1	1	1	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
DZR	PF12773.7	gi|529079056|ref|YP_008378059.1|	-	0.038	14.0	1.0	0.06	13.4	1.0	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|529079056|ref|YP_008378059.1|	-	2.7	7.5	6.0	14	5.3	5.9	2.0	1	1	1	2	2	2	0	zinc-ribbon	domain
DEAD_assoc	PF08494.11	gi|529079057|ref|YP_008378060.1|	-	6.3e-32	110.9	0.0	1.5e-31	109.7	0.0	1.6	1	0	0	1	1	1	1	DEAD/H	associated
DEAD	PF00270.29	gi|529079057|ref|YP_008378060.1|	-	1.5e-29	103.0	0.0	7.7e-29	100.7	0.0	2.0	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|529079057|ref|YP_008378060.1|	-	1.2e-20	73.9	0.1	9.8e-20	71.0	0.0	2.4	3	0	0	3	3	3	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|529079057|ref|YP_008378060.1|	-	3.9e-10	40.0	0.0	7.8e-10	39.0	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_25	PF13481.6	gi|529079057|ref|YP_008378060.1|	-	0.00017	21.2	2.4	0.00084	19.0	0.5	2.8	2	0	0	2	2	2	1	AAA	domain
AAA_19	PF13245.6	gi|529079057|ref|YP_008378060.1|	-	0.00067	20.0	0.0	0.0084	16.4	0.0	2.8	3	0	0	3	3	3	1	AAA	domain
HypA	PF01155.19	gi|529079057|ref|YP_008378060.1|	-	0.15	12.1	0.2	0.38	10.8	0.2	1.6	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Creatininase	PF02633.14	gi|529079058|ref|YP_008378061.1|	-	5.8e-68	228.9	1.1	6.6e-68	228.8	1.1	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
DUF2288	PF10052.9	gi|529079058|ref|YP_008378061.1|	-	0.058	13.5	0.0	24	5.1	0.0	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2288)
Metallophos	PF00149.28	gi|529079059|ref|YP_008378062.1|	-	2.6e-07	31.4	0.0	5e-07	30.4	0.0	1.4	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|529079059|ref|YP_008378062.1|	-	5.4e-07	30.0	0.3	8e-07	29.4	0.3	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
tRNA_anti-codon	PF01336.25	gi|529079061|ref|YP_008378064.1|	-	3.6e-07	30.1	1.8	0.072	13.1	0.1	4.2	4	1	0	4	4	4	3	OB-fold	nucleic	acid	binding	domain
zf-RING_7	PF02591.15	gi|529079061|ref|YP_008378064.1|	-	0.024	14.8	0.1	0.051	13.8	0.1	1.6	1	0	0	1	1	1	0	C4-type	zinc	ribbon	domain
RibD_C	PF01872.17	gi|529079062|ref|YP_008378065.1|	-	8.8e-54	182.4	0.0	9.8e-54	182.2	0.0	1.0	1	0	0	1	1	1	1	RibD	C-terminal	domain
DUF2496	PF10689.9	gi|529079063|ref|YP_008378066.1|	-	0.022	14.5	0.7	0.038	13.8	0.1	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2496)
Fer4	PF00037.27	gi|529079065|ref|YP_008378068.1|	-	1.9e-11	43.3	13.6	1e-07	31.5	4.8	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|529079065|ref|YP_008378068.1|	-	1.5e-09	38.3	4.1	5.6e-05	23.7	1.6	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|529079065|ref|YP_008378068.1|	-	6e-08	32.7	4.3	9.1e-08	32.2	4.3	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|529079065|ref|YP_008378068.1|	-	1.4e-07	31.5	17.9	1.9e-05	24.7	7.5	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|529079065|ref|YP_008378068.1|	-	3.6e-07	30.0	13.6	4.5e-06	26.5	5.2	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|529079065|ref|YP_008378068.1|	-	3.9e-06	26.9	9.7	2.7e-05	24.2	9.9	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|529079065|ref|YP_008378068.1|	-	1.4e-05	25.9	5.5	0.00045	21.1	1.6	2.3	2	0	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_17	PF13534.6	gi|529079065|ref|YP_008378068.1|	-	2e-05	25.0	1.6	0.022	15.3	0.5	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|529079065|ref|YP_008378068.1|	-	4.9e-05	23.2	10.4	0.0013	18.7	3.5	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|529079065|ref|YP_008378068.1|	-	6.1e-05	23.4	5.6	0.0018	18.7	6.4	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|529079065|ref|YP_008378068.1|	-	0.00043	20.6	2.3	0.00043	20.6	2.3	2.2	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|529079065|ref|YP_008378068.1|	-	0.0022	18.2	2.8	0.0022	18.2	2.8	2.0	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|529079065|ref|YP_008378068.1|	-	0.0023	18.5	11.5	0.093	13.3	4.3	2.5	2	1	1	3	3	3	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_3	PF12798.7	gi|529079065|ref|YP_008378068.1|	-	0.0023	18.7	4.1	0.0023	18.7	4.1	2.3	2	0	0	2	2	2	1	4Fe-4S	binding	domain
ETF_QO	PF05187.13	gi|529079065|ref|YP_008378068.1|	-	0.0029	17.7	0.3	0.0034	17.5	0.3	1.1	1	0	0	1	1	1	1	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Glycos_transf_2	PF00535.26	gi|529079066|ref|YP_008378069.1|	-	8.6e-27	94.0	0.1	1.5e-26	93.2	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|529079066|ref|YP_008378069.1|	-	8.3e-13	48.7	0.1	2e-12	47.5	0.1	1.6	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|529079066|ref|YP_008378069.1|	-	1.1e-05	25.0	0.4	6.9e-05	22.5	0.1	2.0	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|529079066|ref|YP_008378069.1|	-	1.1e-05	25.4	0.0	1.5e-05	25.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.6	gi|529079066|ref|YP_008378069.1|	-	0.0044	16.5	0.0	0.014	14.8	0.0	1.8	1	1	0	1	1	1	1	Glycosyl	transferase	family	21
NTP_transf_3	PF12804.7	gi|529079066|ref|YP_008378069.1|	-	0.017	15.5	0.1	0.025	14.9	0.1	1.3	1	0	0	1	1	1	0	MobA-like	NTP	transferase	domain
Glyco_tranf_2_5	PF13712.6	gi|529079066|ref|YP_008378069.1|	-	0.12	12.0	0.0	0.21	11.3	0.0	1.3	1	0	0	1	1	1	0	Glycosyltransferase	like	family
Glycos_transf_1	PF00534.20	gi|529079067|ref|YP_008378070.1|	-	9e-24	83.9	0.0	1.4e-23	83.3	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|529079067|ref|YP_008378070.1|	-	1.2e-12	48.4	0.0	1.7e-12	47.9	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|529079067|ref|YP_008378070.1|	-	0.00019	21.5	0.1	0.0003	20.8	0.1	1.3	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
DDE_Tnp_1	PF01609.21	gi|529079068|ref|YP_008378071.1|	-	2e-08	34.1	0.1	2.7e-08	33.7	0.1	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
Glycos_transf_1	PF00534.20	gi|529079069|ref|YP_008378072.1|	-	6.8e-36	123.4	0.0	1.9e-35	122.0	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|529079069|ref|YP_008378072.1|	-	7.1e-28	97.7	0.0	1.2e-27	96.9	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|529079069|ref|YP_008378072.1|	-	1.8e-12	47.6	0.0	1.8e-11	44.3	0.0	2.2	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|529079069|ref|YP_008378072.1|	-	7.6e-10	39.1	0.0	4.6e-09	36.5	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|529079069|ref|YP_008378072.1|	-	0.0027	17.8	0.0	0.084	12.9	0.0	2.5	2	0	0	2	2	2	1	Glycosyl	transferase	4-like
Glyco_trans_4_4	PF13579.6	gi|529079069|ref|YP_008378072.1|	-	0.0031	18.0	0.0	0.007	16.8	0.0	1.6	1	1	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Epimerase_2	PF02350.19	gi|529079069|ref|YP_008378072.1|	-	0.042	12.7	0.1	0.091	11.6	0.1	1.5	1	1	0	1	1	1	0	UDP-N-acetylglucosamine	2-epimerase
Glycos_transf_1	PF00534.20	gi|529079070|ref|YP_008378073.1|	-	7.2e-35	120.0	0.0	1.1e-34	119.4	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|529079070|ref|YP_008378073.1|	-	1.1e-28	100.3	0.0	2.1e-28	99.4	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|529079070|ref|YP_008378073.1|	-	1.2e-16	61.2	0.0	3e-16	59.9	0.0	1.7	2	1	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|529079070|ref|YP_008378073.1|	-	6e-11	43.0	0.0	1.5e-10	41.8	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|529079070|ref|YP_008378073.1|	-	0.00037	20.8	0.0	0.00071	19.9	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|529079070|ref|YP_008378073.1|	-	0.075	13.1	0.0	0.12	12.4	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	transferase	4-like
Glycos_transf_1	PF00534.20	gi|529079071|ref|YP_008378074.1|	-	2.3e-34	118.4	0.0	3.3e-34	117.9	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|529079071|ref|YP_008378074.1|	-	1.1e-26	93.9	0.0	2.3e-26	92.8	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|529079071|ref|YP_008378074.1|	-	3.7e-13	49.7	0.0	9.1e-13	48.4	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|529079071|ref|YP_008378074.1|	-	7.7e-11	42.3	0.2	2.4e-10	40.7	0.1	1.9	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|529079071|ref|YP_008378074.1|	-	0.0019	18.7	0.0	0.0049	17.3	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Polysacc_synt	PF01943.17	gi|529079072|ref|YP_008378075.1|	-	1.6e-24	86.8	24.0	1.6e-24	86.8	24.0	2.1	2	0	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_3	PF13440.6	gi|529079072|ref|YP_008378075.1|	-	6.6e-22	78.1	10.0	6.6e-22	78.1	10.0	1.8	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.6	gi|529079072|ref|YP_008378075.1|	-	7.1e-18	65.0	20.6	7.1e-18	65.0	20.6	3.6	3	1	0	3	3	3	2	Polysaccharide	biosynthesis	C-terminal	domain
MurJ	PF03023.14	gi|529079072|ref|YP_008378075.1|	-	0.2	10.2	34.3	14	4.1	33.2	3.6	1	1	0	1	1	1	0	Lipid	II	flippase	MurJ
B277	PF17623.2	gi|529079072|ref|YP_008378075.1|	-	1.7	7.7	4.5	14	4.6	0.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function
Glycos_transf_2	PF00535.26	gi|529079073|ref|YP_008378076.1|	-	6.7e-21	74.8	0.1	1.4e-20	73.8	0.1	1.5	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|529079073|ref|YP_008378076.1|	-	1.5e-11	44.7	0.0	2.2e-11	44.1	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
NTP_transf_3	PF12804.7	gi|529079073|ref|YP_008378076.1|	-	9.2e-05	22.8	0.0	0.00014	22.2	0.0	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Glyco_tranf_2_4	PF13704.6	gi|529079073|ref|YP_008378076.1|	-	0.017	15.6	0.0	0.038	14.5	0.0	1.6	1	1	0	1	1	1	0	Glycosyl	transferase	family	2
SfLAP	PF11139.8	gi|529079073|ref|YP_008378076.1|	-	0.064	12.7	0.2	0.089	12.2	0.2	1.1	1	0	0	1	1	1	0	Sap,	sulfolipid-1-addressing	protein
RhaT	PF06379.12	gi|529079073|ref|YP_008378076.1|	-	0.31	10.2	3.0	0.43	9.7	3.0	1.1	1	0	0	1	1	1	0	L-rhamnose-proton	symport	protein	(RhaT)
DUF2795	PF11387.8	gi|529079074|ref|YP_008378077.1|	-	0.066	13.4	0.1	0.27	11.4	0.0	2.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2795)
HLH	PF00010.26	gi|529079074|ref|YP_008378077.1|	-	0.11	12.5	0.0	0.18	11.8	0.0	1.3	1	0	0	1	1	1	0	Helix-loop-helix	DNA-binding	domain
Rhomboid	PF01694.22	gi|529079075|ref|YP_008378078.1|	-	6.8e-10	39.1	20.7	6.8e-10	39.1	20.7	2.8	2	1	0	2	2	2	1	Rhomboid	family
GTA_holin_3TM	PF11351.8	gi|529079075|ref|YP_008378078.1|	-	3	8.4	7.9	4.4	7.9	1.1	2.7	2	0	0	2	2	2	0	Holin	of	3TMs,	for	gene-transfer	release
DUF2407_C	PF13373.6	gi|529079075|ref|YP_008378078.1|	-	4	7.6	4.4	10	6.3	0.3	2.8	2	1	1	3	3	3	0	DUF2407	C-terminal	domain
MTS	PF05175.14	gi|529079076|ref|YP_008378079.1|	-	5.5e-11	42.3	0.0	8.3e-11	41.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.13	gi|529079076|ref|YP_008378079.1|	-	3.9e-09	36.3	0.1	5.2e-09	35.9	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_25	PF13649.6	gi|529079076|ref|YP_008378079.1|	-	3.9e-09	37.1	0.0	1e-08	35.7	0.0	1.8	2	0	0	2	2	1	1	Methyltransferase	domain
UPF0020	PF01170.18	gi|529079076|ref|YP_008378079.1|	-	1.5e-08	34.6	0.1	2.4e-07	30.6	0.1	2.0	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_31	PF13847.6	gi|529079076|ref|YP_008378079.1|	-	1.8e-08	34.3	0.0	2.7e-08	33.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|529079076|ref|YP_008378079.1|	-	2.8e-07	31.1	0.0	5.9e-07	30.0	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|529079076|ref|YP_008378079.1|	-	1.2e-06	28.3	0.0	1.7e-06	27.8	0.0	1.1	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_32	PF13679.6	gi|529079076|ref|YP_008378079.1|	-	4.2e-05	23.6	0.0	5e-05	23.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|529079076|ref|YP_008378079.1|	-	6.8e-05	22.3	0.0	0.00015	21.1	0.0	1.5	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.6	gi|529079076|ref|YP_008378079.1|	-	0.00055	19.8	0.0	0.0006	19.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|529079076|ref|YP_008378079.1|	-	0.00057	20.6	0.0	0.0011	19.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.7	gi|529079076|ref|YP_008378079.1|	-	0.0038	17.2	0.0	0.0054	16.7	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.20	gi|529079076|ref|YP_008378079.1|	-	0.0048	16.2	0.0	0.0057	16.0	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_9	PF08003.11	gi|529079076|ref|YP_008378079.1|	-	0.0057	15.6	0.0	0.0078	15.2	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
FtsJ	PF01728.19	gi|529079076|ref|YP_008378079.1|	-	0.015	15.4	0.0	0.022	14.9	0.0	1.2	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
PCMT	PF01135.19	gi|529079076|ref|YP_008378079.1|	-	0.042	13.6	0.0	0.059	13.1	0.0	1.1	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Met_10	PF02475.16	gi|529079076|ref|YP_008378079.1|	-	0.05	13.3	0.0	0.068	12.9	0.0	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
DUF43	PF01861.16	gi|529079076|ref|YP_008378079.1|	-	0.091	12.0	0.0	0.13	11.4	0.0	1.2	1	0	0	1	1	1	0	Branched-chain	polyamine	synthase	A	C-terminal	domain
Methyltransf_15	PF09445.10	gi|529079076|ref|YP_008378079.1|	-	0.096	12.2	0.0	0.12	11.9	0.0	1.2	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
AdoMet_MTase	PF07757.13	gi|529079076|ref|YP_008378079.1|	-	0.12	12.8	0.0	0.19	12.1	0.0	1.3	1	0	0	1	1	1	0	Predicted	AdoMet-dependent	methyltransferase
Methyltransf_4	PF02390.17	gi|529079076|ref|YP_008378079.1|	-	0.19	11.2	0.0	0.27	10.7	0.0	1.2	1	0	0	1	1	1	0	Putative	methyltransferase
HisKA_4TM	PF16926.5	gi|529079077|ref|YP_008378080.1|	-	4.2e-12	45.9	4.0	7.4e-12	45.1	4.0	1.3	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
Romo1	PF10247.9	gi|529079077|ref|YP_008378080.1|	-	0.043	14.2	0.2	0.18	12.2	0.0	2.1	2	0	0	2	2	2	0	Reactive	mitochondrial	oxygen	species	modulator	1
RNase_P_p30	PF01876.16	gi|529079078|ref|YP_008378081.1|	-	3.5e-37	128.0	0.0	4e-37	127.8	0.0	1.0	1	0	0	1	1	1	1	RNase	P	subunit	p30
TPP_enzyme_M	PF00205.22	gi|529079078|ref|YP_008378081.1|	-	0.12	12.1	0.0	0.25	11.1	0.0	1.5	1	0	0	1	1	1	0	Thiamine	pyrophosphate	enzyme,	central	domain
RNA_binding	PF01877.17	gi|529079079|ref|YP_008378082.1|	-	3.7e-32	111.1	0.0	4.9e-32	110.7	0.0	1.2	1	0	0	1	1	1	1	RNA	binding
YflT	PF11181.8	gi|529079079|ref|YP_008378082.1|	-	0.049	14.1	0.1	0.075	13.6	0.1	1.5	1	1	0	1	1	1	0	Heat	induced	stress	protein	YflT
DUF1918	PF08940.11	gi|529079080|ref|YP_008378083.1|	-	0.0015	18.1	0.2	0.002	17.7	0.2	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1918)
NUDIX	PF00293.28	gi|529079081|ref|YP_008378084.1|	-	2.2e-16	60.1	0.5	3.4e-16	59.5	0.5	1.3	1	0	0	1	1	1	1	NUDIX	domain
PyrI	PF01948.18	gi|529079082|ref|YP_008378085.1|	-	2.5e-33	114.2	0.4	3.2e-33	113.8	0.4	1.1	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	allosteric	domain
PyrI_C	PF02748.15	gi|529079082|ref|YP_008378085.1|	-	1e-13	50.9	0.3	2.1e-13	49.9	0.3	1.5	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
OTCace_N	PF02729.21	gi|529079083|ref|YP_008378086.1|	-	1.1e-42	145.5	0.0	2e-41	141.5	0.0	2.1	2	0	0	2	2	2	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.24	gi|529079083|ref|YP_008378086.1|	-	9.8e-30	103.7	0.0	1.6e-29	103.0	0.0	1.3	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
ATPase	PF06745.13	gi|529079084|ref|YP_008378087.1|	-	4.1e-08	32.9	0.0	0.00051	19.5	0.0	2.1	1	1	1	2	2	2	2	KaiC
NUDIX	PF00293.28	gi|529079085|ref|YP_008378088.1|	-	3e-14	53.2	1.2	4e-14	52.8	1.2	1.2	1	0	0	1	1	1	1	NUDIX	domain
FKBP_C	PF00254.28	gi|529079086|ref|YP_008378089.1|	-	7.9e-07	29.3	1.3	1.3e-06	28.7	0.1	2.0	2	1	0	2	2	2	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
DUF2890	PF11081.8	gi|529079086|ref|YP_008378089.1|	-	7.6	6.6	6.0	17	5.5	6.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2890)
CYTH	PF01928.21	gi|529079087|ref|YP_008378090.1|	-	1.1e-42	146.0	4.1	1.2e-42	145.8	4.1	1.0	1	0	0	1	1	1	1	CYTH	domain
TOBE_2	PF08402.10	gi|529079087|ref|YP_008378090.1|	-	0.078	13.1	0.4	0.62	10.3	0.1	2.3	1	1	1	2	2	2	0	TOBE	domain
AdoMet_Synthase	PF01941.19	gi|529079088|ref|YP_008378091.1|	-	4.1e-174	579.0	5.3	4.6e-174	578.8	5.3	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	synthetase	(AdoMet	synthetase)
S-AdoMet_synt_N	PF00438.20	gi|529079088|ref|YP_008378091.1|	-	0.096	13.4	0.5	0.42	11.3	0.0	2.4	3	0	0	3	3	3	0	S-adenosylmethionine	synthetase,	N-terminal	domain
Asp23	PF03780.13	gi|529079088|ref|YP_008378091.1|	-	1	9.8	6.3	2.2	8.8	0.7	3.3	2	1	0	2	2	2	0	Asp23	family,	cell	envelope-related	function
ThiI	PF02568.14	gi|529079089|ref|YP_008378092.1|	-	2e-43	148.3	0.0	2.7e-43	147.9	0.0	1.1	1	0	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
THUMP	PF02926.17	gi|529079089|ref|YP_008378092.1|	-	4.7e-13	49.4	0.0	7.2e-13	48.9	0.0	1.3	1	0	0	1	1	1	1	THUMP	domain
QueC	PF06508.13	gi|529079089|ref|YP_008378092.1|	-	9.6e-06	25.2	0.0	0.06	12.8	0.0	2.4	2	0	0	2	2	2	2	Queuosine	biosynthesis	protein	QueC
ATP_bind_3	PF01171.20	gi|529079089|ref|YP_008378092.1|	-	0.015	15.1	0.0	0.028	14.2	0.0	1.4	1	0	0	1	1	1	0	PP-loop	family
tRNA_Me_trans	PF03054.16	gi|529079089|ref|YP_008378092.1|	-	0.085	11.6	0.0	0.12	11.1	0.0	1.2	1	0	0	1	1	1	0	tRNA	methyl	transferase
Pes-10	PF07149.11	gi|529079090|ref|YP_008378093.1|	-	0.23	10.5	0.0	0.27	10.3	0.0	1.1	1	0	0	1	1	1	0	Pes-10
Response_reg	PF00072.24	gi|529079091|ref|YP_008378094.1|	-	1.8e-19	69.9	0.0	2.1e-19	69.7	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PALP	PF00291.25	gi|529079092|ref|YP_008378095.1|	-	7.9e-64	215.9	0.4	1e-63	215.5	0.4	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ADH_zinc_N	PF00107.26	gi|529079092|ref|YP_008378095.1|	-	0.05	13.6	0.1	0.17	11.9	0.0	2.0	2	1	0	2	2	2	0	Zinc-binding	dehydrogenase
Thioredoxin	PF00085.20	gi|529079093|ref|YP_008378096.1|	-	9.2e-10	38.4	0.0	1.2e-09	38.1	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_9	PF14595.6	gi|529079093|ref|YP_008378096.1|	-	0.00032	20.5	0.0	0.00045	20.0	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
AhpC-TSA	PF00578.21	gi|529079093|ref|YP_008378096.1|	-	0.004	17.1	0.0	0.034	14.1	0.0	1.9	1	1	1	2	2	2	1	AhpC/TSA	family
RP-C	PF03428.13	gi|529079093|ref|YP_008378096.1|	-	0.013	15.1	0.0	0.019	14.6	0.0	1.1	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
Thioredoxin_8	PF13905.6	gi|529079093|ref|YP_008378096.1|	-	0.024	15.0	0.0	0.58	10.5	0.0	2.2	1	1	1	2	2	2	0	Thioredoxin-like
Thioredoxin_2	PF13098.6	gi|529079093|ref|YP_008378096.1|	-	0.05	14.1	0.0	0.11	12.9	0.0	1.5	1	1	0	1	1	1	0	Thioredoxin-like	domain
DUF4352	PF11611.8	gi|529079094|ref|YP_008378097.1|	-	0.056	13.7	0.0	0.07	13.4	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4352)
Thioredox_DsbH	PF03190.15	gi|529079095|ref|YP_008378098.1|	-	3.8e-74	248.1	0.0	5.5e-74	247.5	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF255
Thioredoxin_7	PF13899.6	gi|529079095|ref|YP_008378098.1|	-	1.3e-09	38.1	0.0	2.3e-09	37.3	0.0	1.5	1	0	0	1	1	1	1	Thioredoxin-like
GlcNAc_2-epim	PF07221.11	gi|529079095|ref|YP_008378098.1|	-	0.031	13.5	0.0	0.32	10.2	0.0	2.2	2	0	0	2	2	2	0	N-acylglucosamine	2-epimerase	(GlcNAc	2-epimerase)
C5-epim_C	PF06662.13	gi|529079095|ref|YP_008378098.1|	-	0.032	13.7	0.0	0.063	12.8	0.0	1.4	1	0	0	1	1	1	0	D-glucuronyl	C5-epimerase	C-terminus
Glyco_hydro_88	PF07470.13	gi|529079095|ref|YP_008378098.1|	-	0.099	11.7	0.0	0.36	9.8	0.0	1.9	3	0	0	3	3	3	0	Glycosyl	Hydrolase	Family	88
DUF4936	PF16290.5	gi|529079095|ref|YP_008378098.1|	-	0.14	12.9	0.0	0.52	11.0	0.0	2.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4936)
GARS_A	PF01071.19	gi|529079096|ref|YP_008378099.1|	-	1.9e-51	174.6	0.0	3.2e-51	173.9	0.0	1.4	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
GARS_N	PF02844.15	gi|529079096|ref|YP_008378099.1|	-	2.4e-22	79.5	0.1	4.7e-22	78.6	0.1	1.5	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	N	domain
GARS_C	PF02843.16	gi|529079096|ref|YP_008378099.1|	-	5.2e-13	49.1	0.8	2e-12	47.2	0.1	2.3	3	0	0	3	3	3	1	Phosphoribosylglycinamide	synthetase,	C	domain
ATP-grasp_3	PF02655.14	gi|529079096|ref|YP_008378099.1|	-	3e-06	27.4	0.0	6.3e-06	26.3	0.0	1.5	1	1	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|529079096|ref|YP_008378099.1|	-	0.0071	15.6	0.0	0.012	14.9	0.0	1.3	1	0	0	1	1	1	1	Sugar-transfer	associated	ATP-grasp
ATP-grasp_4	PF13535.6	gi|529079096|ref|YP_008378099.1|	-	0.023	14.3	0.0	0.099	12.2	0.0	2.0	2	1	0	2	2	2	0	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|529079096|ref|YP_008378099.1|	-	0.045	13.3	0.0	0.084	12.3	0.0	1.4	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
DUF302	PF03625.14	gi|529079097|ref|YP_008378100.1|	-	6.2e-22	77.3	0.0	8.9e-22	76.8	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF302
Lyase_8_C	PF02884.17	gi|529079097|ref|YP_008378100.1|	-	0.17	12.4	0.0	0.33	11.5	0.0	1.5	1	0	0	1	1	1	0	Polysaccharide	lyase	family	8,	C-terminal	beta-sandwich	domain
DUF445	PF04286.12	gi|529079098|ref|YP_008378101.1|	-	9.5e-05	22.4	16.4	0.00018	21.4	16.4	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF445)
DUF2884	PF11101.8	gi|529079098|ref|YP_008378101.1|	-	0.00074	19.1	19.1	0.015	14.8	9.5	2.2	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF2884)
DUF5314	PF17241.2	gi|529079098|ref|YP_008378101.1|	-	0.00078	19.2	10.4	0.46	10.1	1.0	3.4	1	1	1	2	2	2	2	Family	of	unknown	function	(DUF5314)
COMPASS-Shg1	PF05205.12	gi|529079098|ref|YP_008378101.1|	-	0.0043	17.7	15.4	72	4.2	15.4	2.9	1	1	0	1	1	1	0	COMPASS	(Complex	proteins	associated	with	Set1p)	component	shg1
GerPC	PF10737.9	gi|529079098|ref|YP_008378101.1|	-	0.007	16.5	8.2	0.037	14.1	0.5	2.1	1	1	1	2	2	2	2	Spore	germination	protein	GerPC
EcsC	PF12787.7	gi|529079098|ref|YP_008378101.1|	-	0.012	15.3	5.7	0.39	10.3	1.6	2.7	1	1	1	2	2	2	0	EcsC	protein	family
YpjP	PF14005.6	gi|529079098|ref|YP_008378101.1|	-	0.012	15.6	18.1	0.92	9.6	2.0	3.2	1	1	2	3	3	3	0	YpjP-like	protein
MT0933_antitox	PF14013.6	gi|529079098|ref|YP_008378101.1|	-	0.019	15.2	13.9	1.8	9.0	0.5	4.4	1	1	1	2	2	2	0	MT0933-like	antitoxin	protein
CEL_III_C	PF18054.1	gi|529079098|ref|YP_008378101.1|	-	0.032	14.3	21.4	0.17	11.9	7.8	2.1	1	1	1	2	2	2	0	CEL-III	C-terminal
DUF3819	PF12842.7	gi|529079098|ref|YP_008378101.1|	-	0.046	13.7	14.3	3.1	7.7	0.2	3.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3819)
PGDH_C	PF16896.5	gi|529079098|ref|YP_008378101.1|	-	0.096	12.6	22.5	3.8	7.5	0.6	4.0	1	1	2	3	3	3	0	Phosphogluconate	dehydrogenase	(decarboxylating)	C-term
SecA_SW	PF07516.13	gi|529079098|ref|YP_008378101.1|	-	0.11	12.5	14.7	43	4.1	14.6	2.3	1	1	0	1	1	1	0	SecA	Wing	and	Scaffold	domain
Asp-B-Hydro_N	PF05279.11	gi|529079098|ref|YP_008378101.1|	-	0.25	11.4	34.0	0.4	10.7	34.0	1.4	1	0	0	1	1	1	0	Aspartyl	beta-hydroxylase	N-terminal	region
HEPN_Swt1	PF18731.1	gi|529079098|ref|YP_008378101.1|	-	0.37	11.1	7.8	3.7e+02	1.5	7.8	3.2	1	1	0	1	1	1	0	Swt1-like	HEPN
ACP	PF06857.11	gi|529079098|ref|YP_008378101.1|	-	0.44	10.8	22.0	2.4	8.4	1.3	3.7	1	1	2	3	3	3	0	Malonate	decarboxylase	delta	subunit	(MdcD)
ARGLU	PF15346.6	gi|529079098|ref|YP_008378101.1|	-	0.66	9.8	37.2	13	5.6	8.3	3.6	1	1	1	2	2	2	0	Arginine	and	glutamate-rich	1
PIN_8	PF18476.1	gi|529079098|ref|YP_008378101.1|	-	0.69	9.7	11.8	17	5.2	11.8	2.3	1	1	0	1	1	1	0	PIN	like	domain
FragX_IP	PF05994.11	gi|529079098|ref|YP_008378101.1|	-	0.86	7.6	3.7	7.3	4.5	0.5	2.2	1	1	1	2	2	2	0	Cytoplasmic	Fragile-X	interacting	family
CelTOS	PF18659.1	gi|529079098|ref|YP_008378101.1|	-	1.2	9.6	15.3	4.6	7.7	5.6	2.8	1	1	1	2	2	2	0	Cell-traversal	protein	for	ookinetes	and	sporozoites
Virul_fac_BrkB	PF03631.15	gi|529079098|ref|YP_008378101.1|	-	1.2	8.6	6.3	11	5.5	0.1	3.5	1	1	1	2	2	2	0	Virulence	factor	BrkB
Sec3_C_2	PF15278.6	gi|529079098|ref|YP_008378101.1|	-	1.4	9.3	16.9	43	4.6	2.0	3.9	1	1	1	2	2	2	0	Sec3	exocyst	complex	subunit
QIL1	PF15884.5	gi|529079098|ref|YP_008378101.1|	-	2.6	8.7	10.5	3.7	8.2	0.5	3.2	1	1	1	2	2	2	0	MICOS	complex	subunit	MIC13,	QIL1
Methyltransf_7	PF03492.15	gi|529079098|ref|YP_008378101.1|	-	3.7	6.7	10.0	33	3.5	10.1	1.9	1	1	0	1	1	1	0	SAM	dependent	carboxyl	methyltransferase
Tam41_Mmp37	PF09139.11	gi|529079098|ref|YP_008378101.1|	-	6.2	6.2	6.9	31	3.9	6.9	1.9	1	1	0	1	1	1	0	Phosphatidate	cytidylyltransferase,	mitochondrial
WASH-7_mid	PF14744.6	gi|529079098|ref|YP_008378101.1|	-	6.9	5.6	8.7	2.5e+02	0.5	8.7	2.1	1	1	0	1	1	1	0	WASH	complex	subunit	7
Glycohydro_20b2	PF14845.6	gi|529079098|ref|YP_008378101.1|	-	7.2	7.3	8.7	3.1e+02	2.0	8.7	2.3	1	1	0	1	1	1	0	beta-acetyl	hexosaminidase	like
SAC3	PF12209.8	gi|529079098|ref|YP_008378101.1|	-	8.1	6.7	20.8	14	6.0	0.8	4.4	1	1	1	2	2	1	0	Leucine	permease	transcriptional	regulator	helical	domain
T2SSE	PF00437.20	gi|529079099|ref|YP_008378102.1|	-	5.7e-13	48.5	0.1	1.1e-12	47.6	0.1	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_16	PF13191.6	gi|529079099|ref|YP_008378102.1|	-	0.00032	21.1	0.1	0.0015	19.0	0.0	2.2	2	0	0	2	2	1	1	AAA	ATPase	domain
PIN	PF01850.21	gi|529079099|ref|YP_008378102.1|	-	0.0005	20.6	0.3	0.0013	19.2	0.1	1.9	2	0	0	2	2	1	1	PIN	domain
Thymidylate_kin	PF02223.17	gi|529079099|ref|YP_008378102.1|	-	0.0012	18.6	0.0	0.0036	17.0	0.0	1.8	1	1	0	1	1	1	1	Thymidylate	kinase
IstB_IS21	PF01695.17	gi|529079099|ref|YP_008378102.1|	-	0.0018	18.1	0.0	0.0035	17.1	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
MeaB	PF03308.16	gi|529079099|ref|YP_008378102.1|	-	0.0023	17.0	0.1	0.12	11.3	0.0	2.4	2	0	0	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
NTPase_1	PF03266.15	gi|529079099|ref|YP_008378102.1|	-	0.0026	17.7	0.0	0.0097	15.8	0.0	2.0	1	1	0	1	1	1	1	NTPase
AAA_5	PF07728.14	gi|529079099|ref|YP_008378102.1|	-	0.0041	17.1	0.0	0.01	15.8	0.0	1.7	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_30	PF13604.6	gi|529079099|ref|YP_008378102.1|	-	0.0043	16.8	0.0	0.016	14.9	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_29	PF13555.6	gi|529079099|ref|YP_008378102.1|	-	0.0051	16.5	0.0	0.012	15.3	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.6	gi|529079099|ref|YP_008378102.1|	-	0.0062	17.1	0.0	0.032	14.8	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
KH_1	PF00013.29	gi|529079099|ref|YP_008378102.1|	-	0.0074	16.1	1.1	0.02	14.7	0.5	2.1	1	1	0	1	1	1	1	KH	domain
AAA_25	PF13481.6	gi|529079099|ref|YP_008378102.1|	-	0.0086	15.7	3.9	0.14	11.7	0.5	2.6	2	1	0	2	2	2	1	AAA	domain
AAA_33	PF13671.6	gi|529079099|ref|YP_008378102.1|	-	0.012	15.8	0.0	0.042	14.0	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_7	PF12775.7	gi|529079099|ref|YP_008378102.1|	-	0.018	14.6	0.0	0.031	13.8	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
KTI12	PF08433.10	gi|529079099|ref|YP_008378102.1|	-	0.02	14.4	0.0	0.034	13.6	0.0	1.3	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA_22	PF13401.6	gi|529079099|ref|YP_008378102.1|	-	0.024	14.9	0.0	0.095	13.0	0.0	2.0	2	0	0	2	2	1	0	AAA	domain
KH_5	PF13184.6	gi|529079099|ref|YP_008378102.1|	-	0.028	14.5	0.2	0.081	13.0	0.2	1.7	1	0	0	1	1	1	0	NusA-like	KH	domain
ATPase	PF06745.13	gi|529079099|ref|YP_008378102.1|	-	0.031	13.6	0.0	0.14	11.5	0.0	2.0	2	0	0	2	2	2	0	KaiC
AAA	PF00004.29	gi|529079099|ref|YP_008378102.1|	-	0.031	14.7	0.0	0.079	13.4	0.0	1.7	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
KH_2	PF07650.17	gi|529079099|ref|YP_008378102.1|	-	0.032	14.1	1.8	0.082	12.8	1.8	1.7	1	0	0	1	1	1	0	KH	domain
Zeta_toxin	PF06414.12	gi|529079099|ref|YP_008378102.1|	-	0.032	13.5	0.0	0.072	12.4	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
ATP_bind_1	PF03029.17	gi|529079099|ref|YP_008378102.1|	-	0.051	13.4	0.0	0.078	12.7	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_28	PF13521.6	gi|529079099|ref|YP_008378102.1|	-	0.053	13.8	0.1	0.28	11.4	0.0	2.3	2	0	0	2	2	1	0	AAA	domain
NACHT	PF05729.12	gi|529079099|ref|YP_008378102.1|	-	0.11	12.5	0.0	0.2	11.5	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
APS_kinase	PF01583.20	gi|529079099|ref|YP_008378102.1|	-	0.12	12.3	0.0	0.22	11.4	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
Viral_helicase1	PF01443.18	gi|529079099|ref|YP_008378102.1|	-	0.12	12.1	0.0	0.19	11.4	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
Sigma54_activat	PF00158.26	gi|529079099|ref|YP_008378102.1|	-	0.14	11.8	0.0	0.27	10.9	0.0	1.3	1	0	0	1	1	1	0	Sigma-54	interaction	domain
ABC_tran	PF00005.27	gi|529079099|ref|YP_008378102.1|	-	0.16	12.5	0.0	0.34	11.4	0.0	1.5	1	0	0	1	1	1	0	ABC	transporter
TsaE	PF02367.17	gi|529079099|ref|YP_008378102.1|	-	0.18	11.8	0.0	0.36	10.8	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
RNA_helicase	PF00910.22	gi|529079099|ref|YP_008378102.1|	-	0.19	12.1	0.0	0.47	10.9	0.0	1.7	2	0	0	2	2	1	0	RNA	helicase
Imm1	PF14430.6	gi|529079099|ref|YP_008378102.1|	-	0.25	12.0	3.7	0.64	10.7	0.3	3.1	2	1	0	2	2	2	0	Immunity	protein	Imm1
GlcNAc_2-epim	PF07221.11	gi|529079100|ref|YP_008378103.1|	-	2.2e-97	326.4	6.6	2.7e-97	326.1	6.6	1.1	1	0	0	1	1	1	1	N-acylglucosamine	2-epimerase	(GlcNAc	2-epimerase)
Glyco_hydro_76	PF03663.14	gi|529079100|ref|YP_008378103.1|	-	2.1e-05	24.2	2.0	0.0078	15.8	0.2	2.8	3	0	0	3	3	3	2	Glycosyl	hydrolase	family	76
Glyco_hydro_127	PF07944.12	gi|529079100|ref|YP_008378103.1|	-	0.00038	19.1	0.4	0.0051	15.4	0.4	2.0	1	1	0	1	1	1	1	Beta-L-arabinofuranosidase,	GH127
C5-epim_C	PF06662.13	gi|529079100|ref|YP_008378103.1|	-	0.13	11.7	0.6	4.8	6.6	0.0	2.4	2	0	0	2	2	2	0	D-glucuronyl	C5-epimerase	C-terminus
Peptidase_M24	PF00557.24	gi|529079101|ref|YP_008378104.1|	-	2.8e-47	161.1	1.8	3.8e-47	160.7	0.7	1.7	2	0	0	2	2	2	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|529079101|ref|YP_008378104.1|	-	2.2e-07	31.6	0.1	6.4e-07	30.1	0.1	1.7	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
TetR_C_6	PF13977.6	gi|529079102|ref|YP_008378105.1|	-	3.4e-15	56.3	8.0	6e-15	55.5	8.0	1.4	1	0	0	1	1	1	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_C_24	PF17932.1	gi|529079102|ref|YP_008378105.1|	-	7.6e-08	32.6	0.8	1.4e-07	31.8	0.8	1.5	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_N	PF00440.23	gi|529079102|ref|YP_008378105.1|	-	2.9e-07	30.2	0.1	5.7e-07	29.2	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_27	PF17935.1	gi|529079102|ref|YP_008378105.1|	-	4.6e-07	29.9	3.2	7.9e-07	29.1	2.8	1.6	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_31	PF17940.1	gi|529079102|ref|YP_008378105.1|	-	0.00017	21.8	7.7	0.00032	20.9	7.1	1.8	1	1	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_7	PF14246.6	gi|529079102|ref|YP_008378105.1|	-	0.0005	20.1	1.8	0.0014	18.6	2.1	1.6	2	0	0	2	2	2	1	AefR-like	transcriptional	repressor,	C-terminal	domain
TetR_C_29	PF17938.1	gi|529079102|ref|YP_008378105.1|	-	0.0017	18.4	0.1	0.0028	17.7	0.1	1.4	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_17	PF17922.1	gi|529079102|ref|YP_008378105.1|	-	0.013	15.6	0.0	0.026	14.6	0.0	1.5	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_2	PF08361.11	gi|529079102|ref|YP_008378105.1|	-	0.028	14.5	0.0	0.071	13.2	0.0	1.6	1	1	0	1	1	1	0	MAATS-type	transcriptional	repressor,	C-terminal	region
Gluconate_2-dh3	PF13618.6	gi|529079102|ref|YP_008378105.1|	-	0.082	13.1	0.3	0.099	12.9	0.3	1.3	1	0	0	1	1	1	0	Gluconate	2-dehydrogenase	subunit	3
TetR_C_5	PF08360.11	gi|529079102|ref|YP_008378105.1|	-	0.11	12.7	0.0	0.17	12.1	0.0	1.4	1	0	0	1	1	1	0	QacR-like	protein,	C-terminal	region
Clathrin	PF00637.20	gi|529079102|ref|YP_008378105.1|	-	0.15	11.9	0.0	0.29	11.0	0.0	1.4	1	0	0	1	1	1	0	Region	in	Clathrin	and	VPS
IMPDH	PF00478.25	gi|529079104|ref|YP_008378107.1|	-	1.9e-140	467.8	6.8	2.1e-140	467.6	6.8	1.0	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
CBS	PF00571.28	gi|529079104|ref|YP_008378107.1|	-	3.9e-24	84.9	5.5	3.5e-11	43.4	0.6	2.8	2	0	0	2	2	2	2	CBS	domain
NMO	PF03060.15	gi|529079104|ref|YP_008378107.1|	-	3.4e-12	46.4	2.3	4.2e-06	26.4	0.8	2.3	2	0	0	2	2	2	2	Nitronate	monooxygenase
FMN_dh	PF01070.18	gi|529079104|ref|YP_008378107.1|	-	2.5e-06	26.8	9.9	7.5e-06	25.2	9.8	1.7	1	1	0	1	1	1	1	FMN-dependent	dehydrogenase
ThiG	PF05690.14	gi|529079104|ref|YP_008378107.1|	-	6.8e-05	22.3	0.9	6.8e-05	22.3	0.9	2.4	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
DHO_dh	PF01180.21	gi|529079104|ref|YP_008378107.1|	-	0.00032	20.0	0.7	0.00066	19.0	0.7	1.5	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
His_biosynth	PF00977.21	gi|529079104|ref|YP_008378107.1|	-	0.0013	18.2	2.5	0.0022	17.5	0.9	2.1	2	1	0	2	2	2	1	Histidine	biosynthesis	protein
Glu_synthase	PF01645.17	gi|529079104|ref|YP_008378107.1|	-	0.0014	17.8	5.1	0.0019	17.4	3.6	1.8	2	0	0	2	2	2	1	Conserved	region	in	glutamate	synthase
Dus	PF01207.17	gi|529079104|ref|YP_008378107.1|	-	0.011	14.9	0.1	0.023	13.8	0.1	1.5	1	0	0	1	1	1	0	Dihydrouridine	synthase	(Dus)
Methyltransf_24	PF13578.6	gi|529079104|ref|YP_008378107.1|	-	0.13	13.3	0.6	0.38	11.8	0.4	2.0	2	0	0	2	2	1	0	Methyltransferase	domain
G3P_antiterm	PF04309.12	gi|529079104|ref|YP_008378107.1|	-	0.14	11.5	0.5	0.99	8.8	0.1	2.3	2	0	0	2	2	2	0	Glycerol-3-phosphate	responsive	antiterminator
B12-binding	PF02310.19	gi|529079104|ref|YP_008378107.1|	-	0.24	11.5	5.7	0.18	11.9	0.5	3.1	2	1	1	3	3	3	0	B12	binding	domain
Amino_oxidase	PF01593.24	gi|529079105|ref|YP_008378108.1|	-	7.2e-25	88.2	1.9	4.3e-16	59.3	0.3	2.0	1	1	1	2	2	2	2	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|529079105|ref|YP_008378108.1|	-	1.6e-13	50.7	0.7	3.5e-13	49.6	0.3	1.8	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|529079105|ref|YP_008378108.1|	-	3e-09	37.0	7.1	9.9e-07	28.6	1.1	2.2	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
Prenylcys_lyase	PF07156.14	gi|529079105|ref|YP_008378108.1|	-	0.00065	18.9	0.0	0.00088	18.5	0.0	1.1	1	0	0	1	1	1	1	Prenylcysteine	lyase
ApbA	PF02558.16	gi|529079105|ref|YP_008378108.1|	-	0.047	13.3	0.0	0.11	12.1	0.1	1.6	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
NAD_binding_9	PF13454.6	gi|529079105|ref|YP_008378108.1|	-	0.1	12.6	0.8	12	5.8	0.3	2.3	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Pyr_redox_2	PF07992.14	gi|529079105|ref|YP_008378108.1|	-	0.21	10.8	2.2	0.45	9.7	2.3	1.7	1	1	1	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|529079105|ref|YP_008378108.1|	-	0.6	9.1	1.8	0.83	8.7	1.8	1.2	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
GtrA	PF04138.14	gi|529079106|ref|YP_008378109.1|	-	4.4e-24	85.0	3.2	9e-24	84.0	3.4	1.4	1	1	0	1	1	1	1	GtrA-like	protein
Glycos_transf_2	PF00535.26	gi|529079107|ref|YP_008378110.1|	-	2.7e-11	43.5	0.0	3.6e-11	43.2	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|529079107|ref|YP_008378110.1|	-	0.097	12.5	0.0	0.13	12.1	0.0	1.3	1	0	0	1	1	1	0	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|529079107|ref|YP_008378110.1|	-	0.13	11.7	0.0	0.16	11.4	0.0	1.1	1	0	0	1	1	1	0	Glycosyltransferase	like	family	2
DUF2298	PF10060.9	gi|529079108|ref|YP_008378111.1|	-	2.1e-143	478.7	36.6	3.9e-143	477.8	36.6	1.4	1	0	0	1	1	1	1	Uncharacterized	membrane	protein	(DUF2298)
Ribosomal_L44	PF00935.19	gi|529079110|ref|YP_008378113.1|	-	9.1e-18	64.5	0.5	9.4e-18	64.5	0.5	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L44
zf-ribbon_3	PF13248.6	gi|529079110|ref|YP_008378113.1|	-	0.0036	16.7	0.0	0.0049	16.2	0.0	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
Ribosomal_S27e	PF01667.17	gi|529079111|ref|YP_008378114.1|	-	4.5e-21	74.3	0.5	4.8e-21	74.2	0.5	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S27
DUF3797	PF12677.7	gi|529079111|ref|YP_008378114.1|	-	5.6e-05	23.0	2.3	0.15	12.0	0.1	2.1	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF3797)
TF_Zn_Ribbon	PF08271.12	gi|529079111|ref|YP_008378114.1|	-	0.00022	20.7	2.0	0.00031	20.2	2.0	1.2	1	0	0	1	1	1	1	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.10	gi|529079111|ref|YP_008378114.1|	-	0.00086	19.4	0.3	0.0011	19.0	0.3	1.2	1	0	0	1	1	1	1	Zinc	ribbon	domain
zf-RRN7	PF11781.8	gi|529079111|ref|YP_008378114.1|	-	0.0085	15.8	3.7	0.14	11.9	0.2	2.2	1	1	1	2	2	2	1	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
HypA	PF01155.19	gi|529079111|ref|YP_008378114.1|	-	0.022	14.8	0.3	0.025	14.6	0.3	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
OrfB_Zn_ribbon	PF07282.11	gi|529079111|ref|YP_008378114.1|	-	0.053	13.5	0.2	0.068	13.1	0.2	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
A2L_zn_ribbon	PF08792.10	gi|529079111|ref|YP_008378114.1|	-	0.058	13.1	2.1	6.4	6.6	0.2	2.0	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|529079111|ref|YP_008378114.1|	-	0.065	13.2	1.8	1.4	8.9	2.2	2.0	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|529079111|ref|YP_008378114.1|	-	0.081	12.9	2.5	4.3	7.4	0.1	2.4	1	1	1	2	2	2	0	zinc-ribbon	domain
TFIIS_C	PF01096.18	gi|529079111|ref|YP_008378114.1|	-	0.087	12.7	0.9	2.3	8.2	0.1	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
DUF2614	PF11023.8	gi|529079111|ref|YP_008378114.1|	-	0.091	12.9	0.1	0.094	12.8	0.1	1.1	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
zf-NADH-PPase	PF09297.11	gi|529079111|ref|YP_008378114.1|	-	0.092	12.4	1.9	2.4	7.9	0.2	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Zn_ribbon_recom	PF13408.6	gi|529079111|ref|YP_008378114.1|	-	0.13	12.8	1.2	1.4	9.5	0.2	2.2	2	1	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
zf-HIT	PF04438.16	gi|529079111|ref|YP_008378114.1|	-	0.2	11.6	2.1	10	6.1	0.2	2.1	2	0	0	2	2	2	0	HIT	zinc	finger
zf-Di19	PF05605.12	gi|529079111|ref|YP_008378114.1|	-	0.72	10.2	3.5	8.9	6.7	3.5	2.0	1	1	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
EIF_2_alpha	PF07541.12	gi|529079112|ref|YP_008378115.1|	-	8.6e-27	93.5	0.0	1.5e-26	92.8	0.0	1.4	1	0	0	1	1	1	1	Eukaryotic	translation	initiation	factor	2	alpha	subunit
S1	PF00575.23	gi|529079112|ref|YP_008378115.1|	-	1.1e-12	48.1	0.9	2.5e-12	47.0	0.9	1.5	1	0	0	1	1	1	1	S1	RNA	binding	domain
Asparaginase	PF00710.20	gi|529079112|ref|YP_008378115.1|	-	0.014	14.9	0.1	0.021	14.4	0.1	1.3	1	0	0	1	1	1	0	Asparaginase,	N-terminal
cwf21	PF08312.12	gi|529079112|ref|YP_008378115.1|	-	0.044	13.9	0.1	0.21	11.8	0.1	2.2	1	0	0	1	1	1	0	cwf21	domain
EXOSC1	PF10447.9	gi|529079112|ref|YP_008378115.1|	-	0.051	14.2	0.3	0.26	11.9	0.3	2.2	1	1	1	2	2	2	0	Exosome	component	EXOSC1/CSL4
Nop10p	PF04135.12	gi|529079113|ref|YP_008378116.1|	-	3.6e-25	87.8	0.5	4e-25	87.6	0.5	1.0	1	0	0	1	1	1	1	Nucleolar	RNA-binding	protein,	Nop10p	family
A2L_zn_ribbon	PF08792.10	gi|529079113|ref|YP_008378116.1|	-	0.073	12.8	0.3	0.38	10.5	0.1	1.9	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
PAC2	PF09754.9	gi|529079114|ref|YP_008378117.1|	-	9.1e-51	172.9	0.2	1.1e-50	172.7	0.2	1.0	1	0	0	1	1	1	1	PAC2	family
PALP	PF00291.25	gi|529079115|ref|YP_008378118.1|	-	6.6e-46	157.1	7.4	8.6e-46	156.7	7.4	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
DZR	PF12773.7	gi|529079115|ref|YP_008378118.1|	-	0.03	14.3	1.0	0.056	13.5	1.0	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|529079115|ref|YP_008378118.1|	-	0.034	13.9	3.0	0.06	13.1	3.0	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|529079115|ref|YP_008378118.1|	-	0.056	12.9	4.2	0.12	11.9	4.2	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-Mss51	PF13824.6	gi|529079115|ref|YP_008378118.1|	-	0.059	13.5	4.1	0.11	12.6	4.1	1.4	1	0	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Prok-RING_1	PF14446.6	gi|529079115|ref|YP_008378118.1|	-	0.58	10.1	3.7	1	9.3	3.7	1.3	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
DUF1610	PF07754.11	gi|529079115|ref|YP_008378118.1|	-	0.75	9.8	3.2	16	5.6	0.5	2.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
TF_Zn_Ribbon	PF08271.12	gi|529079115|ref|YP_008378118.1|	-	1.1	8.8	5.6	2.1	7.9	5.6	1.4	1	0	0	1	1	1	0	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.10	gi|529079115|ref|YP_008378118.1|	-	1.1	9.4	5.8	3.9	7.7	5.8	1.8	1	1	0	1	1	1	0	Zinc	ribbon	domain
Metallophos	PF00149.28	gi|529079117|ref|YP_008378120.1|	-	3.6e-06	27.6	1.8	3e-05	24.6	1.8	2.0	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
HTH_24	PF13412.6	gi|529079118|ref|YP_008378121.1|	-	3.6e-11	42.4	0.0	7e-11	41.5	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|529079118|ref|YP_008378121.1|	-	1.6e-10	40.7	0.7	5.4e-10	39.0	0.1	2.2	2	0	0	2	2	2	1	MarR	family
MarR	PF01047.22	gi|529079118|ref|YP_008378121.1|	-	6.5e-09	35.6	0.0	1.4e-08	34.5	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|529079118|ref|YP_008378121.1|	-	4.9e-07	30.2	0.2	2.8e-06	27.7	0.0	2.3	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.6	gi|529079118|ref|YP_008378121.1|	-	2e-06	27.7	0.1	6.1e-06	26.1	0.0	1.8	2	0	0	2	2	1	1	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|529079118|ref|YP_008378121.1|	-	0.00011	22.0	0.0	0.00021	21.0	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|529079118|ref|YP_008378121.1|	-	0.00015	21.8	0.0	0.00032	20.7	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_45	PF14947.6	gi|529079118|ref|YP_008378121.1|	-	0.00015	21.6	0.0	0.00024	21.0	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_11	PF08279.12	gi|529079118|ref|YP_008378121.1|	-	0.00016	21.5	0.0	0.00025	20.9	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_5	PF01022.20	gi|529079118|ref|YP_008378121.1|	-	0.00047	20.0	0.0	0.00074	19.3	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_13	PF11972.8	gi|529079118|ref|YP_008378121.1|	-	0.00082	19.4	0.1	0.0018	18.3	0.1	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
TrmB	PF01978.19	gi|529079118|ref|YP_008378121.1|	-	0.00093	19.0	0.1	0.0017	18.2	0.1	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
DUF4423	PF14394.6	gi|529079118|ref|YP_008378121.1|	-	0.0023	17.6	0.0	0.0033	17.1	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
SMC_ScpB	PF04079.16	gi|529079118|ref|YP_008378121.1|	-	0.0025	17.5	0.1	0.0051	16.4	0.1	1.5	1	0	0	1	1	1	1	Segregation	and	condensation	complex	subunit	ScpB
Rrf2	PF02082.20	gi|529079118|ref|YP_008378121.1|	-	0.0035	17.7	0.0	0.0086	16.4	0.0	1.6	1	0	0	1	1	1	1	Transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|529079118|ref|YP_008378121.1|	-	0.0045	17.1	0.0	0.0088	16.2	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_12	PF08461.10	gi|529079118|ref|YP_008378121.1|	-	0.0047	16.9	0.0	0.011	15.7	0.0	1.6	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_23	PF13384.6	gi|529079118|ref|YP_008378121.1|	-	0.0069	16.1	0.0	0.017	14.9	0.0	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
Mnd1	PF03962.15	gi|529079118|ref|YP_008378121.1|	-	0.0084	16.4	0.0	0.015	15.5	0.0	1.4	1	0	0	1	1	1	1	Mnd1	HTH	domain
GntR	PF00392.21	gi|529079118|ref|YP_008378121.1|	-	0.013	15.2	0.4	0.081	12.6	0.2	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
TetR_C_7	PF14246.6	gi|529079118|ref|YP_008378121.1|	-	0.014	15.4	0.5	0.058	13.4	0.0	2.1	2	0	0	2	2	2	0	AefR-like	transcriptional	repressor,	C-terminal	domain
FaeA	PF04703.12	gi|529079118|ref|YP_008378121.1|	-	0.018	15.4	0.2	0.33	11.4	0.0	2.3	2	0	0	2	2	2	0	FaeA-like	protein
Rio2_N	PF09202.11	gi|529079118|ref|YP_008378121.1|	-	0.021	15.0	0.0	0.043	14.0	0.0	1.4	1	0	0	1	1	1	0	Rio2,	N-terminal
DUF4364	PF14277.6	gi|529079118|ref|YP_008378121.1|	-	0.022	14.5	0.0	0.032	14.0	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
LexA_DNA_bind	PF01726.16	gi|529079118|ref|YP_008378121.1|	-	0.063	13.1	0.0	0.14	12.0	0.0	1.6	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_AsnC-type	PF13404.6	gi|529079118|ref|YP_008378121.1|	-	0.064	13.1	0.3	0.21	11.4	0.0	2.1	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
HemN_C	PF06969.16	gi|529079118|ref|YP_008378121.1|	-	0.072	13.2	0.0	0.16	12.0	0.0	1.6	1	0	0	1	1	1	0	HemN	C-terminal	domain
Mrr_N	PF14338.6	gi|529079118|ref|YP_008378121.1|	-	0.1	12.8	0.0	0.27	11.4	0.0	1.7	1	1	0	1	1	1	0	Mrr	N-terminal	domain
NMD3	PF04981.13	gi|529079118|ref|YP_008378121.1|	-	0.11	12.0	0.0	0.15	11.5	0.0	1.2	1	0	0	1	1	1	0	NMD3	family
RepL	PF05732.11	gi|529079118|ref|YP_008378121.1|	-	0.14	11.6	0.0	1.3	8.5	0.0	2.0	2	0	0	2	2	2	0	Firmicute	plasmid	replication	protein	(RepL)
HTH_3	PF01381.22	gi|529079118|ref|YP_008378121.1|	-	0.2	11.7	0.1	0.38	10.9	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix
Diphthamide_syn	PF01866.17	gi|529079120|ref|YP_008378123.1|	-	8.5e-76	255.3	0.0	1.1e-75	255.0	0.0	1.0	1	0	0	1	1	1	1	Putative	diphthamide	synthesis	protein
GTP-bdg_N	PF13167.6	gi|529079120|ref|YP_008378123.1|	-	0.095	13.4	0.0	0.89	10.3	0.0	2.4	2	1	0	2	2	2	0	GTP-binding	GTPase	N-terminal
Methyltransf_25	PF13649.6	gi|529079121|ref|YP_008378124.1|	-	4.1e-18	65.9	0.0	7.8e-18	65.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|529079121|ref|YP_008378124.1|	-	7.4e-14	52.2	0.1	1.8e-13	51.0	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|529079121|ref|YP_008378124.1|	-	1.4e-13	50.9	0.0	2.3e-13	50.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|529079121|ref|YP_008378124.1|	-	1.4e-11	45.0	0.0	2.4e-11	44.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|529079121|ref|YP_008378124.1|	-	5.6e-07	29.5	0.0	1.1e-06	28.6	0.0	1.4	2	0	0	2	2	2	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|529079121|ref|YP_008378124.1|	-	1.7e-06	27.5	0.1	6.4e-06	25.7	0.0	1.7	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
MTS	PF05175.14	gi|529079121|ref|YP_008378124.1|	-	0.00018	21.1	0.0	0.00026	20.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
DREV	PF05219.12	gi|529079121|ref|YP_008378124.1|	-	0.00048	19.3	0.0	0.00074	18.7	0.0	1.2	1	0	0	1	1	1	1	DREV	methyltransferase
Methyltransf_32	PF13679.6	gi|529079121|ref|YP_008378124.1|	-	0.0024	17.9	0.0	0.0034	17.4	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.13	gi|529079121|ref|YP_008378124.1|	-	0.0025	17.3	0.1	0.0035	16.8	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
CMAS	PF02353.20	gi|529079121|ref|YP_008378124.1|	-	0.03	13.6	0.0	0.044	13.1	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Methyltransf_2	PF00891.18	gi|529079121|ref|YP_008378124.1|	-	0.074	12.3	0.0	0.11	11.8	0.0	1.2	1	0	0	1	1	1	0	O-methyltransferase	domain
Methyltransf_18	PF12847.7	gi|529079121|ref|YP_008378124.1|	-	0.18	11.8	0.0	0.27	11.1	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
RrnaAD	PF00398.20	gi|529079121|ref|YP_008378124.1|	-	0.3	10.1	0.0	0.42	9.6	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
RNase_P_Rpp14	PF01900.19	gi|529079122|ref|YP_008378125.1|	-	9.3e-20	70.8	0.0	1.1e-19	70.5	0.0	1.1	1	0	0	1	1	1	1	Rpp14/Pop5	family
Proteasome	PF00227.26	gi|529079123|ref|YP_008378126.1|	-	1.1e-59	201.1	0.1	1.4e-59	200.8	0.1	1.1	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome_A_N	PF10584.9	gi|529079123|ref|YP_008378126.1|	-	9.5e-14	50.8	0.1	1.7e-13	49.9	0.1	1.5	1	0	0	1	1	1	1	Proteasome	subunit	A	N-terminal	signature
SBDS	PF01172.18	gi|529079124|ref|YP_008378127.1|	-	4.1e-20	71.6	0.0	5.9e-20	71.1	0.0	1.2	1	0	0	1	1	1	1	Shwachman-Bodian-Diamond	syndrome	(SBDS)	protein
SBDS_C	PF09377.10	gi|529079124|ref|YP_008378127.1|	-	2.1e-16	59.9	0.0	3.9e-16	59.1	0.0	1.4	1	0	0	1	1	1	1	SBDS	protein	C-terminal	domain
Lar_restr_allev	PF14354.6	gi|529079125|ref|YP_008378128.1|	-	0.088	13.2	3.0	0.19	12.1	3.0	1.6	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf-HYPF	PF07503.12	gi|529079125|ref|YP_008378128.1|	-	0.094	12.5	1.6	0.19	11.5	1.6	1.6	1	1	0	1	1	1	0	HypF	finger
zf-ZPR1	PF03367.13	gi|529079125|ref|YP_008378128.1|	-	0.22	11.3	1.6	0.41	10.5	1.6	1.4	1	0	0	1	1	1	0	ZPR1	zinc-finger	domain
AglB_L1	PF18079.1	gi|529079126|ref|YP_008378129.1|	-	5.8e-24	84.2	8.1	1.6e-23	82.8	8.1	1.8	1	0	0	1	1	1	1	Archaeal	glycosylation	protein	B	long	peripheral	domain
STT3	PF02516.14	gi|529079126|ref|YP_008378129.1|	-	7e-23	81.3	16.0	3.1e-22	79.2	15.9	1.8	1	1	0	1	1	1	1	Oligosaccharyl	transferase	STT3	subunit
DUF3751	PF12571.8	gi|529079126|ref|YP_008378129.1|	-	0.0065	16.6	0.4	0.015	15.4	0.4	1.5	1	0	0	1	1	1	1	Phage	tail-collar	fibre	protein
DUF4598	PF15370.6	gi|529079126|ref|YP_008378129.1|	-	0.76	10.3	3.1	1.4	9.4	3.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4598)
DUF368	PF04018.13	gi|529079127|ref|YP_008378130.1|	-	3.5e-64	216.8	20.9	4.4e-64	216.4	20.9	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF368)
Ost4	PF10215.9	gi|529079127|ref|YP_008378130.1|	-	1.2	9.1	6.3	0.65	9.9	0.9	3.2	2	1	0	2	2	2	0	Oligosaccaryltransferase
Glycos_transf_1	PF00534.20	gi|529079128|ref|YP_008378131.1|	-	9.5e-22	77.3	0.0	2.9e-20	72.5	0.0	2.5	2	1	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|529079128|ref|YP_008378131.1|	-	8.1e-20	71.6	0.0	6.5e-18	65.5	0.0	2.2	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|529079128|ref|YP_008378131.1|	-	2.5e-16	60.1	0.4	1.5e-15	57.6	0.0	2.1	1	1	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|529079128|ref|YP_008378131.1|	-	2e-14	53.7	0.2	3.9e-14	52.8	0.2	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|529079128|ref|YP_008378131.1|	-	2.7e-10	40.9	1.1	1.1e-09	38.9	0.8	2.1	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
PEP-utilisers_N	PF05524.13	gi|529079128|ref|YP_008378131.1|	-	0.057	13.6	0.3	0.092	12.9	0.3	1.4	1	0	0	1	1	1	0	PEP-utilising	enzyme,	N-terminal
DUF1961	PF09224.11	gi|529079131|ref|YP_008378134.1|	-	0.17	11.2	0.0	0.2	11.0	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1961)
T2SSE	PF00437.20	gi|529079132|ref|YP_008378135.1|	-	1e-50	172.3	0.0	1.5e-50	171.8	0.0	1.1	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_27	PF13514.6	gi|529079132|ref|YP_008378135.1|	-	0.11	12.1	0.0	1	8.9	0.1	2.1	1	1	1	2	2	2	0	AAA	domain
RNase_II_C_S1	PF18614.1	gi|529079132|ref|YP_008378135.1|	-	0.13	12.2	0.5	0.27	11.2	0.5	1.6	1	0	0	1	1	1	0	RNase	II-type	exonuclease	C-terminal	S1	domain
AAA_29	PF13555.6	gi|529079132|ref|YP_008378135.1|	-	0.17	11.6	0.0	0.37	10.6	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
T2SSF	PF00482.23	gi|529079133|ref|YP_008378136.1|	-	1.1e-34	119.0	18.3	1.8e-20	73.1	3.3	4.0	3	1	0	3	3	3	2	Type	II	secretion	system	(T2SS),	protein	F
DUF2207	PF09972.9	gi|529079133|ref|YP_008378136.1|	-	0.15	10.8	5.9	2.2	7.0	0.0	3.7	4	1	0	4	4	4	0	Predicted	membrane	protein	(DUF2207)
Terminase_2	PF03592.16	gi|529079133|ref|YP_008378136.1|	-	0.21	12.1	0.0	1.4	9.3	0.0	2.1	2	0	0	2	2	2	0	Terminase	small	subunit
OATP	PF03137.20	gi|529079133|ref|YP_008378136.1|	-	0.29	9.4	0.9	0.62	8.3	0.9	1.5	1	0	0	1	1	1	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
Trep_Strep	PF09605.10	gi|529079133|ref|YP_008378136.1|	-	0.38	10.7	17.6	1.5	8.7	2.9	4.1	4	0	0	4	4	4	0	Hypothetical	bacterial	integral	membrane	protein	(Trep_Strep)
p12I	PF12233.8	gi|529079133|ref|YP_008378136.1|	-	4.5	7.8	11.1	6.1	7.4	0.0	3.4	3	0	0	3	3	3	0	Human	adult	T	cell	leukemia/lymphoma	virus	protein
Glyoxalase	PF00903.25	gi|529079134|ref|YP_008378137.1|	-	8.5e-28	97.1	0.0	2.8e-15	56.6	0.0	3.1	2	1	1	3	3	3	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.6	gi|529079134|ref|YP_008378137.1|	-	0.0046	17.1	0.6	8.4	6.5	0.0	3.0	2	1	0	3	3	3	2	Glyoxalase-like	domain
Glyoxalase_4	PF13669.6	gi|529079134|ref|YP_008378137.1|	-	0.0065	16.7	0.0	0.91	9.8	0.0	2.9	2	1	1	3	3	3	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
DoxX	PF07681.12	gi|529079135|ref|YP_008378138.1|	-	2.2e-10	41.0	9.7	2.2e-10	41.0	9.7	1.8	2	0	0	2	2	2	1	DoxX
SURF4	PF02077.15	gi|529079135|ref|YP_008378138.1|	-	9.3e-05	22.1	1.9	0.00056	19.6	1.9	1.9	1	1	0	1	1	1	1	SURF4	family
HR_lesion	PF05514.11	gi|529079135|ref|YP_008378138.1|	-	0.0078	16.4	0.4	0.15	12.2	0.1	2.0	1	1	1	2	2	2	1	HR-like	lesion-inducing
DoxX_2	PF13564.6	gi|529079135|ref|YP_008378138.1|	-	0.038	14.1	12.6	0.082	13.0	12.1	1.7	1	1	1	2	2	2	0	DoxX-like	family
DUF4064	PF13273.6	gi|529079135|ref|YP_008378138.1|	-	0.15	12.3	5.3	0.14	12.4	2.4	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4064)
HxlR	PF01638.17	gi|529079136|ref|YP_008378139.1|	-	1.5e-21	76.0	0.0	1.8e-21	75.8	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_34	PF13601.6	gi|529079136|ref|YP_008378139.1|	-	2.3e-05	24.5	0.0	3e-05	24.1	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|529079136|ref|YP_008378139.1|	-	4.9e-05	23.3	0.5	8.2e-05	22.6	0.5	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|529079136|ref|YP_008378139.1|	-	6.8e-05	22.7	0.1	0.0001	22.1	0.1	1.2	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|529079136|ref|YP_008378139.1|	-	0.00021	21.7	0.2	0.0003	21.2	0.2	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|529079136|ref|YP_008378139.1|	-	0.00041	20.2	0.0	0.00059	19.6	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|529079136|ref|YP_008378139.1|	-	0.00048	20.0	0.1	0.00069	19.5	0.1	1.3	1	0	0	1	1	1	1	MarR	family
PadR	PF03551.14	gi|529079136|ref|YP_008378139.1|	-	0.00096	19.1	0.0	0.0016	18.4	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
Trp_repressor	PF01371.19	gi|529079136|ref|YP_008378139.1|	-	0.0051	16.9	0.0	0.0076	16.4	0.0	1.3	1	0	0	1	1	1	1	Trp	repressor	protein
DUF505	PF04458.12	gi|529079136|ref|YP_008378139.1|	-	0.019	13.3	0.0	0.023	13.1	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
HTH_45	PF14947.6	gi|529079136|ref|YP_008378139.1|	-	0.021	14.8	0.0	0.025	14.5	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
TrmB	PF01978.19	gi|529079136|ref|YP_008378139.1|	-	0.033	14.1	0.1	0.051	13.5	0.1	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.6	gi|529079136|ref|YP_008378139.1|	-	0.051	13.6	0.1	0.083	12.9	0.1	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Replic_Relax	PF13814.6	gi|529079136|ref|YP_008378139.1|	-	0.059	13.4	0.0	0.075	13.1	0.0	1.1	1	0	0	1	1	1	0	Replication-relaxation
DUF4364	PF14277.6	gi|529079136|ref|YP_008378139.1|	-	0.066	12.9	0.0	0.1	12.3	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
TFIIE_alpha	PF02002.17	gi|529079136|ref|YP_008378139.1|	-	0.093	12.6	0.1	0.12	12.3	0.1	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
DEAD_assoc	PF08494.11	gi|529079137|ref|YP_008378140.1|	-	4.3e-53	180.0	0.2	1e-52	178.7	0.2	1.7	1	0	0	1	1	1	1	DEAD/H	associated
DEAD	PF00270.29	gi|529079137|ref|YP_008378140.1|	-	2.2e-31	109.0	0.0	7.5e-30	104.0	0.0	2.3	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|529079137|ref|YP_008378140.1|	-	4e-18	65.8	0.0	7.6e-17	61.7	0.0	2.3	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|529079137|ref|YP_008378140.1|	-	2.9e-09	37.2	0.0	2e-08	34.4	0.0	2.0	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_30	PF13604.6	gi|529079137|ref|YP_008378140.1|	-	0.013	15.3	0.0	0.18	11.5	0.0	2.4	2	1	0	2	2	2	0	AAA	domain
AAA_19	PF13245.6	gi|529079137|ref|YP_008378140.1|	-	0.028	14.8	0.0	0.095	13.0	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
UvrD-helicase	PF00580.21	gi|529079137|ref|YP_008378140.1|	-	0.19	11.2	0.0	4	6.9	0.0	2.7	3	0	0	3	3	3	0	UvrD/REP	helicase	N-terminal	domain
YdjM	PF04307.14	gi|529079138|ref|YP_008378141.1|	-	5.2e-11	42.2	13.2	5.2e-11	42.2	13.2	3.1	1	1	1	2	2	2	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
DUF2238	PF09997.9	gi|529079139|ref|YP_008378142.1|	-	9.8e-06	25.4	1.0	1.5e-05	24.8	1.0	1.4	1	1	0	1	1	1	1	Predicted	membrane	protein	(DUF2238)
FG-GAP_2	PF14312.6	gi|529079141|ref|YP_008378144.1|	-	9.8e-31	105.8	38.0	2.6e-09	37.2	0.6	7.5	7	0	0	7	7	7	7	FG-GAP	repeat
DUF1513	PF07433.11	gi|529079141|ref|YP_008378144.1|	-	0.00043	19.5	2.5	0.55	9.3	0.1	3.7	1	1	1	4	4	4	2	Protein	of	unknown	function	(DUF1513)
PapC_C	PF13953.6	gi|529079141|ref|YP_008378144.1|	-	1.4	8.8	12.0	36	4.3	0.2	5.5	6	0	0	6	6	6	0	PapC	C-terminal	domain
Kelch_3	PF13415.6	gi|529079141|ref|YP_008378144.1|	-	8.9	6.7	11.1	30	5.0	0.1	4.7	5	1	0	5	5	5	0	Galactose	oxidase,	central	domain
GlutR_N	PF05201.15	gi|529079142|ref|YP_008378145.1|	-	2.2e-33	115.1	0.1	8.1e-33	113.2	0.0	2.0	2	0	0	2	2	2	1	Glutamyl-tRNAGlu	reductase,	N-terminal	domain
Shikimate_DH	PF01488.20	gi|529079142|ref|YP_008378145.1|	-	1.9e-31	109.0	0.4	1.9e-31	109.0	0.4	2.0	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
GlutR_dimer	PF00745.20	gi|529079142|ref|YP_008378145.1|	-	2e-22	79.4	0.8	4.2e-22	78.4	0.8	1.6	1	0	0	1	1	1	1	Glutamyl-tRNAGlu	reductase,	dimerisation	domain
Glu_dehyd_C	PF16912.5	gi|529079142|ref|YP_008378145.1|	-	3.2e-06	26.8	2.9	6.1e-06	25.9	2.9	1.5	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
OCD_Mu_crystall	PF02423.15	gi|529079142|ref|YP_008378145.1|	-	5e-05	22.4	1.0	7.5e-05	21.8	1.0	1.3	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
Sacchrp_dh_NADP	PF03435.18	gi|529079142|ref|YP_008378145.1|	-	0.0005	20.3	0.6	0.0005	20.3	0.6	3.0	1	1	2	3	3	3	1	Saccharopine	dehydrogenase	NADP	binding	domain
THF_DHG_CYH_C	PF02882.19	gi|529079142|ref|YP_008378145.1|	-	0.013	14.8	0.3	0.06	12.7	0.3	2.0	1	1	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
DUF1932	PF09130.11	gi|529079142|ref|YP_008378145.1|	-	0.077	13.0	0.8	0.23	11.5	0.8	1.9	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1932)
GFO_IDH_MocA	PF01408.22	gi|529079142|ref|YP_008378145.1|	-	0.13	13.1	1.8	0.16	12.8	0.1	2.1	2	1	0	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
NAD_binding_7	PF13241.6	gi|529079142|ref|YP_008378145.1|	-	0.34	11.4	3.3	0.85	10.1	3.3	1.9	1	1	0	1	1	1	0	Putative	NAD(P)-binding
DUF4410	PF14366.6	gi|529079142|ref|YP_008378145.1|	-	0.79	9.6	5.4	0.65	9.9	0.5	2.7	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4410)
CSD	PF00313.22	gi|529079144|ref|YP_008378147.1|	-	6.5e-21	74.0	0.1	7.2e-21	73.8	0.1	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
Rho_RNA_bind	PF07497.12	gi|529079144|ref|YP_008378147.1|	-	0.0081	16.0	0.0	0.0091	15.8	0.0	1.1	1	0	0	1	1	1	1	Rho	termination	factor,	RNA-binding	domain
S1-like	PF14444.6	gi|529079144|ref|YP_008378147.1|	-	0.011	15.7	1.1	0.016	15.1	1.1	1.4	1	1	0	1	1	1	0	S1-like
OB_RNB	PF08206.11	gi|529079144|ref|YP_008378147.1|	-	0.024	14.3	1.8	0.035	13.8	1.8	1.4	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
CusF_Ec	PF11604.8	gi|529079144|ref|YP_008378147.1|	-	0.077	13.0	0.0	0.098	12.6	0.0	1.3	1	0	0	1	1	1	0	Copper	binding	periplasmic	protein	CusF
CSD	PF00313.22	gi|529079145|ref|YP_008378148.1|	-	1.7e-20	72.6	0.1	1.9e-20	72.5	0.1	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
Rho_RNA_bind	PF07497.12	gi|529079145|ref|YP_008378148.1|	-	0.0062	16.4	0.0	0.007	16.2	0.0	1.1	1	0	0	1	1	1	1	Rho	termination	factor,	RNA-binding	domain
S1-like	PF14444.6	gi|529079145|ref|YP_008378148.1|	-	0.014	15.3	1.3	0.021	14.8	1.3	1.4	1	1	0	1	1	1	0	S1-like
OB_RNB	PF08206.11	gi|529079145|ref|YP_008378148.1|	-	0.029	14.0	2.1	0.044	13.5	2.1	1.4	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
Prenyltransf	PF01255.19	gi|529079146|ref|YP_008378149.1|	-	7.1e-66	221.9	0.0	8.8e-66	221.6	0.0	1.1	1	0	0	1	1	1	1	Putative	undecaprenyl	diphosphate	synthase
Aldo_ket_red	PF00248.21	gi|529079147|ref|YP_008378150.1|	-	4.4e-43	147.5	0.0	4.9e-42	144.1	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
Fer4_17	PF13534.6	gi|529079147|ref|YP_008378150.1|	-	1.4e-10	41.6	6.0	2.6e-10	40.7	6.0	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|529079147|ref|YP_008378150.1|	-	3.7e-09	36.6	7.0	6.5e-09	35.8	7.0	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|529079147|ref|YP_008378150.1|	-	7.3e-07	29.2	5.3	0.0062	16.6	0.5	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|529079147|ref|YP_008378150.1|	-	1e-06	29.1	5.5	1.9e-06	28.2	5.5	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|529079147|ref|YP_008378150.1|	-	0.00013	22.1	6.3	0.033	14.4	0.2	2.4	1	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|529079147|ref|YP_008378150.1|	-	0.00019	21.1	4.4	0.00019	21.1	4.4	2.8	2	1	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|529079147|ref|YP_008378150.1|	-	0.00028	20.9	11.6	0.0041	17.2	12.7	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|529079147|ref|YP_008378150.1|	-	0.00087	20.1	1.8	0.036	14.9	0.2	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|529079147|ref|YP_008378150.1|	-	0.0013	18.7	2.6	0.0013	18.7	2.6	2.6	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|529079147|ref|YP_008378150.1|	-	0.0026	18.3	12.1	0.01	16.4	12.3	1.9	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_20	PF14691.6	gi|529079147|ref|YP_008378150.1|	-	0.03	14.1	3.3	0.25	11.1	0.4	2.2	2	0	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_4	PF12800.7	gi|529079147|ref|YP_008378150.1|	-	0.043	14.3	4.7	0.043	14.3	4.7	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
NADH_4Fe-4S	PF10589.9	gi|529079147|ref|YP_008378150.1|	-	0.087	12.9	2.3	6.3	7.0	0.0	2.5	1	1	1	2	2	2	0	NADH-ubiquinone	oxidoreductase-F	iron-sulfur	binding	region
Fer4_2	PF12797.7	gi|529079147|ref|YP_008378150.1|	-	0.12	12.5	17.6	0.073	13.2	5.2	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|529079147|ref|YP_008378150.1|	-	0.29	12.1	12.8	1.8	9.5	4.6	2.2	1	1	2	3	3	3	0	4Fe-4S	double	cluster	binding	domain
FAD_binding_2	PF00890.24	gi|529079149|ref|YP_008378152.1|	-	1.3e-125	419.8	8.3	1.3e-125	419.8	8.3	1.6	2	0	0	2	2	2	1	FAD	binding	domain
Succ_DH_flav_C	PF02910.20	gi|529079149|ref|YP_008378152.1|	-	1.4e-34	118.8	0.1	2.6e-34	118.0	0.1	1.4	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
Pyr_redox_2	PF07992.14	gi|529079149|ref|YP_008378152.1|	-	2.9e-09	36.6	5.6	0.0004	19.7	4.6	2.9	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|529079149|ref|YP_008378152.1|	-	3.3e-05	22.8	1.5	8e-05	21.5	0.0	2.2	3	0	0	3	3	3	1	HI0933-like	protein
DAO	PF01266.24	gi|529079149|ref|YP_008378152.1|	-	5.4e-05	22.9	12.2	0.0001	22.0	7.4	3.2	2	2	1	3	3	3	1	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|529079149|ref|YP_008378152.1|	-	0.00025	20.5	5.5	0.0006	19.3	5.5	1.6	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|529079149|ref|YP_008378152.1|	-	0.00041	19.6	4.4	0.00041	19.6	4.4	1.8	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|529079149|ref|YP_008378152.1|	-	0.002	17.4	3.9	0.0048	16.2	0.7	2.6	3	0	0	3	3	3	1	Thi4	family
FAD_binding_3	PF01494.19	gi|529079149|ref|YP_008378152.1|	-	0.0059	15.9	1.4	0.0059	15.9	1.4	1.9	2	0	0	2	2	2	1	FAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|529079149|ref|YP_008378152.1|	-	0.017	14.4	0.4	0.032	13.5	0.4	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_8	PF13450.6	gi|529079149|ref|YP_008378152.1|	-	0.048	13.9	0.2	0.27	11.5	0.2	2.4	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.6	gi|529079149|ref|YP_008378152.1|	-	0.051	12.8	4.3	0.038	13.2	0.7	2.3	3	0	0	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_7	PF13241.6	gi|529079149|ref|YP_008378152.1|	-	0.086	13.3	0.0	0.19	12.2	0.0	1.6	1	0	0	1	1	1	0	Putative	NAD(P)-binding
Pyr_redox	PF00070.27	gi|529079149|ref|YP_008378152.1|	-	0.25	11.9	2.2	0.35	11.5	1.1	1.8	2	0	0	2	2	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Fer2_3	PF13085.6	gi|529079150|ref|YP_008378153.1|	-	1.6e-32	111.8	0.5	3.8e-32	110.6	0.0	1.8	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_8	PF13183.6	gi|529079150|ref|YP_008378153.1|	-	1.2e-12	48.0	4.3	1.2e-12	48.0	4.3	2.0	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|529079150|ref|YP_008378153.1|	-	3.5e-09	36.6	3.9	7.4e-09	35.6	3.9	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|529079150|ref|YP_008378153.1|	-	1.6e-07	31.8	1.9	6.3e-07	29.9	1.8	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|529079150|ref|YP_008378153.1|	-	4e-06	27.3	4.2	8.8e-06	26.2	4.2	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|529079150|ref|YP_008378153.1|	-	8.6e-05	22.6	18.8	0.00015	21.8	7.5	2.3	2	1	1	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|529079150|ref|YP_008378153.1|	-	0.0029	17.8	2.2	0.69	10.1	0.4	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_20	PF14691.6	gi|529079150|ref|YP_008378153.1|	-	0.0036	17.1	7.6	0.43	10.4	1.6	2.4	1	1	1	2	2	2	2	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4	PF00037.27	gi|529079150|ref|YP_008378153.1|	-	0.0069	16.2	9.0	0.02	14.7	2.5	2.5	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|529079150|ref|YP_008378153.1|	-	0.011	16.1	9.9	0.017	15.6	3.5	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|529079150|ref|YP_008378153.1|	-	0.037	14.1	2.5	0.037	14.1	2.5	2.7	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|529079150|ref|YP_008378153.1|	-	0.053	14.5	8.1	0.053	14.5	8.1	2.9	2	1	2	4	4	4	0	4Fe-4S	double	cluster	binding	domain
Fer4_3	PF12798.7	gi|529079150|ref|YP_008378153.1|	-	0.066	14.2	12.1	2.2	9.4	0.4	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|529079150|ref|YP_008378153.1|	-	0.068	13.3	8.9	0.08	13.1	3.3	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|529079150|ref|YP_008378153.1|	-	0.15	12.8	2.6	11	6.8	0.2	3.1	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_21	PF14697.6	gi|529079150|ref|YP_008378153.1|	-	1.2	9.3	10.9	21	5.4	10.9	2.3	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Sdh_cyt	PF01127.22	gi|529079151|ref|YP_008378154.1|	-	1.1e-11	44.8	4.9	1.5e-11	44.4	4.9	1.1	1	0	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
Sdh_cyt	PF01127.22	gi|529079152|ref|YP_008378155.1|	-	2.4e-23	82.5	3.8	2.6e-23	82.3	3.8	1.0	1	0	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
Glyco_hydro_3_C	PF01915.22	gi|529079153|ref|YP_008378156.1|	-	9.6e-59	198.8	0.0	2.2e-58	197.6	0.0	1.7	1	1	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Glyco_hydro_3	PF00933.21	gi|529079153|ref|YP_008378156.1|	-	1.6e-53	182.2	0.0	1.2e-51	176.0	0.0	2.2	2	0	0	2	2	2	2	Glycosyl	hydrolase	family	3	N	terminal	domain
Fn3-like	PF14310.6	gi|529079153|ref|YP_008378156.1|	-	2.2e-24	85.3	0.1	5e-24	84.2	0.1	1.7	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
HicA_toxin	PF07927.12	gi|529079155|ref|YP_008378158.1|	-	1.8e-06	27.9	0.0	2.3e-06	27.6	0.0	1.2	1	0	0	1	1	1	1	HicA	toxin	of	bacterial	toxin-antitoxin,
DUF309	PF03745.14	gi|529079156|ref|YP_008378159.1|	-	9.5e-15	54.0	0.2	1.4e-14	53.4	0.2	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF309)
CBS	PF00571.28	gi|529079158|ref|YP_008378161.1|	-	3.5e-23	81.8	3.1	3.8e-13	49.7	1.4	2.7	2	0	0	2	2	2	2	CBS	domain
ParBc	PF02195.18	gi|529079158|ref|YP_008378161.1|	-	1.7e-10	41.0	0.1	1.2e-09	38.3	0.1	2.1	1	1	0	1	1	1	1	ParB-like	nuclease	domain
ParBc_2	PF08857.11	gi|529079158|ref|YP_008378161.1|	-	0.0016	18.6	0.0	0.012	15.7	0.0	2.0	1	1	0	1	1	1	1	Putative	ParB-like	nuclease
DUF1015	PF06245.11	gi|529079158|ref|YP_008378161.1|	-	0.012	14.6	0.0	0.014	14.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1015)
DHHA1	PF02272.19	gi|529079159|ref|YP_008378162.1|	-	1.3e-13	51.5	0.1	4e-13	50.0	0.0	1.8	2	0	0	2	2	2	1	DHHA1	domain
DHH	PF01368.20	gi|529079159|ref|YP_008378162.1|	-	5.6e-12	45.8	0.0	1e-11	44.9	0.0	1.5	1	0	0	1	1	1	1	DHH	family
TrkA_N	PF02254.18	gi|529079159|ref|YP_008378162.1|	-	0.00028	21.1	0.3	0.00081	19.6	0.3	1.8	1	0	0	1	1	1	1	TrkA-N	domain
AMP-binding	PF00501.28	gi|529079160|ref|YP_008378163.1|	-	8.1e-83	278.4	0.1	9.7e-83	278.1	0.1	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|529079160|ref|YP_008378163.1|	-	2.1e-20	73.5	1.9	4e-20	72.6	1.9	1.5	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
ACAS_N	PF16177.5	gi|529079160|ref|YP_008378163.1|	-	6.2e-13	48.5	0.4	2e-12	46.8	0.4	1.9	1	0	0	1	1	1	1	Acetyl-coenzyme	A	synthetase	N-terminus
HTH_24	PF13412.6	gi|529079161|ref|YP_008378164.1|	-	5.4e-16	57.9	0.0	8.1e-16	57.3	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.21	gi|529079161|ref|YP_008378164.1|	-	9.5e-12	44.7	0.0	1.6e-11	44.0	0.0	1.4	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_AsnC-type	PF13404.6	gi|529079161|ref|YP_008378164.1|	-	1.1e-11	44.3	0.1	2.6e-11	43.2	0.1	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|529079161|ref|YP_008378164.1|	-	1.1e-08	34.8	0.0	2.7e-08	33.6	0.0	1.8	1	0	0	1	1	1	1	HTH	domain
HTH_23	PF13384.6	gi|529079161|ref|YP_008378164.1|	-	5.8e-07	29.1	0.0	1.2e-06	28.1	0.0	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_IclR	PF09339.10	gi|529079161|ref|YP_008378164.1|	-	1e-06	28.4	0.0	1.8e-06	27.6	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_36	PF13730.6	gi|529079161|ref|YP_008378164.1|	-	1.2e-05	25.2	0.0	2.2e-05	24.3	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|529079161|ref|YP_008378164.1|	-	1.4e-05	25.2	0.1	5.6e-05	23.2	0.1	1.9	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_DeoR	PF08220.12	gi|529079161|ref|YP_008378164.1|	-	2.4e-05	24.0	0.0	4e-05	23.3	0.0	1.3	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|529079161|ref|YP_008378164.1|	-	3e-05	23.6	0.0	0.0001	21.9	0.0	1.8	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_29	PF13551.6	gi|529079161|ref|YP_008378164.1|	-	3.5e-05	23.7	0.0	5.8e-05	23.0	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
MarR_2	PF12802.7	gi|529079161|ref|YP_008378164.1|	-	4e-05	23.4	0.0	8.2e-05	22.4	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|529079161|ref|YP_008378164.1|	-	4.2e-05	23.5	0.0	0.00013	22.0	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
GntR	PF00392.21	gi|529079161|ref|YP_008378164.1|	-	6.8e-05	22.4	0.0	0.00012	21.6	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_Crp_2	PF13545.6	gi|529079161|ref|YP_008378164.1|	-	0.00011	22.1	0.0	0.00021	21.2	0.0	1.5	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
TrmB	PF01978.19	gi|529079161|ref|YP_008378164.1|	-	0.00013	21.7	0.1	0.00029	20.6	0.1	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_28	PF13518.6	gi|529079161|ref|YP_008378164.1|	-	0.0002	21.4	0.0	0.0005	20.1	0.0	1.6	2	0	0	2	2	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|529079161|ref|YP_008378164.1|	-	0.00032	20.5	0.0	0.00059	19.7	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
FaeA	PF04703.12	gi|529079161|ref|YP_008378164.1|	-	0.00033	21.0	0.0	0.00051	20.4	0.0	1.2	1	0	0	1	1	1	1	FaeA-like	protein
MarR	PF01047.22	gi|529079161|ref|YP_008378164.1|	-	0.00035	20.5	0.0	0.00053	19.9	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_10	PF04967.12	gi|529079161|ref|YP_008378164.1|	-	0.0011	18.7	0.0	0.0019	18.0	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Rrf2	PF02082.20	gi|529079161|ref|YP_008378164.1|	-	0.0016	18.8	0.0	0.0029	17.9	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
TFIIE_alpha	PF02002.17	gi|529079161|ref|YP_008378164.1|	-	0.0034	17.2	0.0	0.0055	16.5	0.0	1.3	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_6	PF01418.17	gi|529079161|ref|YP_008378164.1|	-	0.0065	16.4	0.0	0.011	15.7	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain,	rpiR	family
HTH_47	PF16221.5	gi|529079161|ref|YP_008378164.1|	-	0.012	15.2	0.1	0.026	14.1	0.0	1.6	2	0	0	2	2	2	0	winged	helix-turn-helix
HTH_38	PF13936.6	gi|529079161|ref|YP_008378164.1|	-	0.012	15.3	0.0	0.028	14.2	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|529079161|ref|YP_008378164.1|	-	0.013	15.0	0.1	0.024	14.1	0.1	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_Tnp_ISL3	PF13542.6	gi|529079161|ref|YP_008378164.1|	-	0.017	14.5	0.0	0.027	13.9	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
RPA_C	PF08784.11	gi|529079161|ref|YP_008378164.1|	-	0.023	15.4	0.0	0.1	13.2	0.0	1.9	2	0	0	2	2	2	0	Replication	protein	A	C	terminal
HTH_1	PF00126.27	gi|529079161|ref|YP_008378164.1|	-	0.026	14.5	0.0	0.054	13.4	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
GerE	PF00196.19	gi|529079161|ref|YP_008378164.1|	-	0.027	14.0	0.0	0.046	13.3	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_30	PF13556.6	gi|529079161|ref|YP_008378164.1|	-	0.041	13.7	0.0	0.1	12.4	0.0	1.7	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
LacI	PF00356.21	gi|529079161|ref|YP_008378164.1|	-	0.055	13.3	0.0	0.47	10.3	0.0	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	lacI	family
TnsD	PF15978.5	gi|529079161|ref|YP_008378164.1|	-	0.098	11.6	0.0	0.14	11.2	0.0	1.1	1	0	0	1	1	1	0	Tn7-like	transposition	protein	D
HTH_17	PF12728.7	gi|529079161|ref|YP_008378164.1|	-	0.13	12.5	0.0	0.21	11.8	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
Terminase_5	PF06056.12	gi|529079161|ref|YP_008378164.1|	-	0.13	12.2	0.0	0.26	11.2	0.0	1.5	1	0	0	1	1	1	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
MerR	PF00376.23	gi|529079161|ref|YP_008378164.1|	-	0.13	12.0	0.0	0.25	11.1	0.0	1.4	1	0	0	1	1	1	0	MerR	family	regulatory	protein
PaaX	PF07848.12	gi|529079161|ref|YP_008378164.1|	-	0.14	12.4	0.0	0.25	11.6	0.0	1.4	1	0	0	1	1	1	0	PaaX-like	protein
Penicillinase_R	PF03965.16	gi|529079161|ref|YP_008378164.1|	-	0.15	12.4	0.0	0.24	11.8	0.0	1.3	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_32	PF13565.6	gi|529079161|ref|YP_008378164.1|	-	0.17	12.5	0.1	2.4	8.9	0.1	2.2	1	1	1	2	2	2	0	Homeodomain-like	domain
NUMOD1	PF07453.13	gi|529079161|ref|YP_008378164.1|	-	0.17	12.2	0.0	0.33	11.3	0.0	1.5	1	0	0	1	1	1	0	NUMOD1	domain
TPP_enzyme_C	PF02775.21	gi|529079162|ref|YP_008378165.1|	-	3.1e-32	111.5	0.0	4.4e-32	111.0	0.0	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PFO_beta_C	PF12367.8	gi|529079162|ref|YP_008378165.1|	-	0.00012	22.1	0.9	0.0003	20.9	0.9	1.7	1	0	0	1	1	1	1	Pyruvate	ferredoxin	oxidoreductase	beta	subunit	C	terminal
Sin3_corepress	PF08295.12	gi|529079162|ref|YP_008378165.1|	-	0.038	14.1	0.3	0.36	10.9	0.1	2.2	2	0	0	2	2	2	0	Sin3	family	co-repressor
POR_N	PF01855.19	gi|529079163|ref|YP_008378166.1|	-	4.3e-49	167.3	0.6	7.1e-49	166.6	0.6	1.3	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
POR	PF01558.18	gi|529079163|ref|YP_008378166.1|	-	4.6e-45	153.8	0.1	9.4e-45	152.8	0.1	1.5	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
PFOR_II	PF17147.4	gi|529079163|ref|YP_008378166.1|	-	4.7e-10	39.7	0.0	9.7e-10	38.7	0.0	1.6	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
TPP_enzyme_N	PF02776.18	gi|529079163|ref|YP_008378166.1|	-	0.00049	19.7	0.3	0.0014	18.2	0.3	1.8	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Transketolase_C	PF02780.20	gi|529079163|ref|YP_008378166.1|	-	0.019	14.8	0.0	0.048	13.5	0.0	1.6	1	0	0	1	1	1	0	Transketolase,	C-terminal	domain
GFO_IDH_MocA	PF01408.22	gi|529079165|ref|YP_008378168.1|	-	5.9e-24	85.2	0.0	9.5e-24	84.5	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|529079165|ref|YP_008378168.1|	-	5.4e-12	45.7	0.0	1.1e-11	44.8	0.0	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
F420_oxidored	PF03807.17	gi|529079165|ref|YP_008378168.1|	-	0.0013	19.2	0.8	0.0036	17.8	0.1	2.1	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
Semialdhyde_dh	PF01118.24	gi|529079165|ref|YP_008378168.1|	-	0.01	16.2	0.4	0.031	14.7	0.1	1.9	2	0	0	2	2	2	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|529079165|ref|YP_008378168.1|	-	0.028	13.8	0.0	0.051	12.9	0.0	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
DUF2525	PF10733.9	gi|529079165|ref|YP_008378168.1|	-	0.044	14.1	0.1	0.11	12.7	0.1	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2525)
CoA_binding_2	PF13380.6	gi|529079165|ref|YP_008378168.1|	-	0.054	14.0	0.1	0.16	12.5	0.1	1.9	1	0	0	1	1	1	0	CoA	binding	domain
Rossmann-like	PF10727.9	gi|529079165|ref|YP_008378168.1|	-	0.2	11.5	3.5	0.12	12.2	0.4	2.1	2	0	0	2	2	2	0	Rossmann-like	domain
HATPase_c	PF02518.26	gi|529079166|ref|YP_008378169.1|	-	4.4e-15	56.2	0.1	8.8e-15	55.2	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|529079166|ref|YP_008378169.1|	-	4.6e-11	42.8	2.7	5.4e-11	42.5	0.5	2.1	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.6	gi|529079166|ref|YP_008378169.1|	-	0.00022	21.1	0.0	0.00094	19.0	0.0	2.0	2	0	0	2	2	2	1	GHKL	domain
HisKA_4TM	PF16926.5	gi|529079166|ref|YP_008378169.1|	-	0.00081	19.0	12.0	0.0018	17.9	12.0	1.6	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
HPTransfase	PF10090.9	gi|529079166|ref|YP_008378169.1|	-	0.0034	17.2	0.0	0.0078	16.0	0.0	1.6	1	0	0	1	1	1	1	Histidine	phosphotransferase	C-terminal	domain
DNA_pol_A_exo1	PF01612.20	gi|529079166|ref|YP_008378169.1|	-	0.034	13.9	0.1	0.089	12.5	0.0	1.6	2	0	0	2	2	2	0	3'-5'	exonuclease
HisKA	PF00512.25	gi|529079166|ref|YP_008378169.1|	-	0.065	13.3	0.4	0.14	12.2	0.1	1.8	2	0	0	2	2	2	0	His	Kinase	A	(phospho-acceptor)	domain
Usp	PF00582.26	gi|529079167|ref|YP_008378170.1|	-	3.9e-08	33.9	0.4	4.8e-08	33.6	0.4	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
CheC	PF04509.12	gi|529079168|ref|YP_008378171.1|	-	6.5e-16	57.9	0.9	1.3e-15	57.0	0.2	1.9	2	0	0	2	2	2	1	CheC-like	family
CheX	PF13690.6	gi|529079168|ref|YP_008378171.1|	-	3.4e-06	27.1	1.3	5.8e-06	26.4	0.1	2.0	2	1	0	2	2	2	1	Chemotaxis	phosphatase	CheX
Methyltransf_3	PF01596.17	gi|529079169|ref|YP_008378172.1|	-	3.6e-24	85.1	0.0	4.3e-24	84.9	0.0	1.0	1	0	0	1	1	1	1	O-methyltransferase
Methyltransf_24	PF13578.6	gi|529079169|ref|YP_008378172.1|	-	5.1e-15	56.4	0.1	2.5e-14	54.2	0.1	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|529079169|ref|YP_008378172.1|	-	5.3e-08	32.8	0.0	7.3e-08	32.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|529079169|ref|YP_008378172.1|	-	6.6e-08	33.1	0.0	1.2e-07	32.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|529079169|ref|YP_008378172.1|	-	0.00016	21.5	0.0	0.00023	21.0	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MTS	PF05175.14	gi|529079169|ref|YP_008378172.1|	-	0.0006	19.4	0.0	0.00089	18.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_12	PF08242.12	gi|529079169|ref|YP_008378172.1|	-	0.0013	19.5	0.0	0.0025	18.5	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Spermine_synth	PF01564.17	gi|529079169|ref|YP_008378172.1|	-	0.0016	17.9	0.0	0.0025	17.3	0.0	1.3	1	0	0	1	1	1	1	Spermine/spermidine	synthase	domain
Ubie_methyltran	PF01209.18	gi|529079169|ref|YP_008378172.1|	-	0.059	12.7	0.0	0.083	12.2	0.0	1.1	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
MS_channel	PF00924.18	gi|529079170|ref|YP_008378173.1|	-	1.6e-31	109.4	2.6	3.3e-30	105.2	2.6	2.1	1	1	0	1	1	1	1	Mechanosensitive	ion	channel
MFS_1	PF07690.16	gi|529079170|ref|YP_008378173.1|	-	0.02	13.8	4.1	0.028	13.3	4.1	1.1	1	0	0	1	1	1	0	Major	Facilitator	Superfamily
DUF3040	PF11239.8	gi|529079170|ref|YP_008378173.1|	-	1.1	9.6	5.8	0.58	10.5	3.0	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3040)
DUF4395	PF14340.6	gi|529079170|ref|YP_008378173.1|	-	1.3	9.4	7.3	5.7	7.3	7.5	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4395)
AhpC-TSA	PF00578.21	gi|529079171|ref|YP_008378174.1|	-	8.9e-15	54.7	0.0	1.3e-14	54.2	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|529079171|ref|YP_008378174.1|	-	9.1e-12	44.9	0.0	1.1e-11	44.6	0.0	1.1	1	0	0	1	1	1	1	Redoxin
Thioredoxin_2	PF13098.6	gi|529079171|ref|YP_008378174.1|	-	0.0063	17.0	0.0	0.013	15.9	0.0	1.5	1	1	0	1	1	1	1	Thioredoxin-like	domain
TraF	PF13728.6	gi|529079171|ref|YP_008378174.1|	-	0.11	12.3	0.0	0.19	11.5	0.0	1.3	1	0	0	1	1	1	0	F	plasmid	transfer	operon	protein
Fibin	PF15819.5	gi|529079171|ref|YP_008378174.1|	-	0.12	12.1	0.0	0.14	11.9	0.0	1.1	1	0	0	1	1	1	0	Fin	bud	initiation	factor	homologue
Thioredoxin	PF00085.20	gi|529079171|ref|YP_008378174.1|	-	0.19	11.7	0.1	0.53	10.3	0.1	1.6	1	1	1	2	2	2	0	Thioredoxin
MFS_1	PF07690.16	gi|529079172|ref|YP_008378175.1|	-	2.9e-35	121.8	53.0	8.5e-23	80.8	19.4	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
OATP	PF03137.20	gi|529079172|ref|YP_008378175.1|	-	0.00017	20.1	0.5	0.0031	15.9	0.0	2.2	2	0	0	2	2	2	2	Organic	Anion	Transporter	Polypeptide	(OATP)	family
AsnC_trans_reg	PF01037.21	gi|529079174|ref|YP_008378177.1|	-	3.2e-14	52.6	0.1	7e-14	51.6	0.1	1.6	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_AsnC-type	PF13404.6	gi|529079174|ref|YP_008378177.1|	-	1.5e-06	27.9	1.1	1.6e-05	24.7	0.4	2.3	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|529079174|ref|YP_008378177.1|	-	0.00021	20.8	0.2	0.0022	17.5	0.1	2.3	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|529079174|ref|YP_008378177.1|	-	0.013	15.5	2.5	0.36	10.9	0.9	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
FeoC	PF09012.10	gi|529079174|ref|YP_008378177.1|	-	0.024	14.7	0.0	0.042	13.9	0.0	1.3	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
HTH_27	PF13463.6	gi|529079174|ref|YP_008378177.1|	-	0.034	14.6	0.0	0.45	11.0	0.1	2.4	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
ParB_C	PF18064.1	gi|529079174|ref|YP_008378177.1|	-	0.036	14.2	0.0	0.19	11.9	0.0	2.1	2	0	0	2	2	2	0	Centromere-binding	protein	ParB	C-terminal
HTH_54	PF18607.1	gi|529079174|ref|YP_008378177.1|	-	0.045	13.8	0.0	0.69	10.0	0.0	2.2	2	0	0	2	2	2	0	ParA	helix	turn	helix	domain
MarR_2	PF12802.7	gi|529079174|ref|YP_008378177.1|	-	0.11	12.4	0.3	0.22	11.4	0.3	1.5	1	0	0	1	1	1	0	MarR	family
HTH_11	PF08279.12	gi|529079174|ref|YP_008378177.1|	-	0.13	12.2	0.1	0.29	11.1	0.1	1.5	1	0	0	1	1	1	0	HTH	domain
Aminotran_1_2	PF00155.21	gi|529079175|ref|YP_008378178.1|	-	8.7e-65	219.3	0.0	9.7e-65	219.1	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|529079175|ref|YP_008378178.1|	-	4.4e-05	22.9	0.0	7.5e-05	22.1	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
OKR_DC_1	PF01276.20	gi|529079175|ref|YP_008378178.1|	-	0.032	13.0	0.0	0.043	12.5	0.0	1.3	1	0	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	major	domain
Aminotran_5	PF00266.19	gi|529079175|ref|YP_008378178.1|	-	0.16	10.8	0.0	0.29	10.0	0.0	1.4	1	0	0	1	1	1	0	Aminotransferase	class-V
T2SSE	PF00437.20	gi|529079176|ref|YP_008378179.1|	-	7e-43	146.6	0.0	1.2e-42	145.9	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_29	PF13555.6	gi|529079176|ref|YP_008378179.1|	-	0.0012	18.5	0.1	0.0027	17.4	0.1	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
T2SSF	PF00482.23	gi|529079177|ref|YP_008378180.1|	-	1.4e-31	109.0	12.1	7.5e-18	64.7	0.8	3.1	3	0	0	3	3	3	2	Type	II	secretion	system	(T2SS),	protein	F
Snf7	PF03357.21	gi|529079177|ref|YP_008378180.1|	-	0.1	12.2	0.1	0.1	12.2	0.1	1.7	2	0	0	2	2	2	0	Snf7
DUF2417	PF10329.9	gi|529079177|ref|YP_008378180.1|	-	0.58	9.5	6.8	1.4	8.3	0.0	3.4	3	0	0	3	3	3	0	Region	of	unknown	function	(DUF2417)
DUF4064	PF13273.6	gi|529079177|ref|YP_008378180.1|	-	2.6	8.4	17.7	0.45	10.8	0.7	4.8	4	1	2	6	6	6	0	Protein	of	unknown	function	(DUF4064)
Pilin_N	PF07790.11	gi|529079178|ref|YP_008378181.1|	-	0.28	12.1	6.1	14	6.7	5.2	3.1	2	1	0	2	2	2	0	Archaeal	Type	IV	pilin,	N-terminal
TarH	PF02203.15	gi|529079179|ref|YP_008378182.1|	-	0.046	13.6	0.4	0.057	13.3	0.4	1.1	1	0	0	1	1	1	0	Tar	ligand	binding	domain	homologue
Ketoacyl-synt_C	PF02801.22	gi|529079180|ref|YP_008378183.1|	-	0.0077	16.2	0.0	0.017	15.1	0.0	1.5	1	0	0	1	1	1	1	Beta-ketoacyl	synthase,	C-terminal	domain
Lipoprotein_16	PF03923.13	gi|529079181|ref|YP_008378184.1|	-	0.029	14.0	0.0	0.036	13.7	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	lipoprotein
CARDB	PF07705.11	gi|529079183|ref|YP_008378186.1|	-	7.9e-19	67.8	56.5	4.9e-06	26.7	0.4	9.5	6	2	3	9	9	9	7	CARDB
Glug	PF07581.12	gi|529079183|ref|YP_008378186.1|	-	0.0039	17.5	20.4	4	8.0	0.9	7.2	6	0	0	6	6	6	2	The	GLUG	motif
DUF4198	PF10670.9	gi|529079183|ref|YP_008378186.1|	-	0.0085	16.5	0.4	0.081	13.3	0.0	2.9	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF4198)
Ig_GlcNase	PF18368.1	gi|529079183|ref|YP_008378186.1|	-	0.014	15.6	0.4	14	5.9	0.1	4.2	2	0	0	2	2	2	0	Exo-beta-D-glucosaminidase	Ig-fold	domain
4HBT	PF03061.22	gi|529079183|ref|YP_008378186.1|	-	0.082	13.3	0.1	93	3.5	0.0	4.4	5	0	0	5	5	5	0	Thioesterase	superfamily
Fn3-like	PF14310.6	gi|529079183|ref|YP_008378186.1|	-	0.16	12.1	0.5	66	3.7	0.0	4.0	4	0	0	4	4	4	0	Fibronectin	type	III-like	domain
ASH	PF15780.5	gi|529079183|ref|YP_008378186.1|	-	0.91	9.8	20.0	17	5.7	0.3	7.4	4	2	3	7	7	7	0	Abnormal	spindle-like	microcephaly-assoc'd,	ASPM-SPD-2-Hydin
GTP_EFTU	PF00009.27	gi|529079184|ref|YP_008378187.1|	-	4.9e-65	218.7	0.4	8.5e-65	217.9	0.4	1.4	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
EFG_C	PF00679.24	gi|529079184|ref|YP_008378187.1|	-	1.6e-24	85.7	0.1	2.7e-23	81.8	0.0	2.7	2	0	0	2	2	2	1	Elongation	factor	G	C-terminus
EFG_IV	PF03764.18	gi|529079184|ref|YP_008378187.1|	-	1.7e-23	82.7	0.0	5.2e-23	81.1	0.0	1.8	1	0	0	1	1	1	1	Elongation	factor	G,	domain	IV
EFG_II	PF14492.6	gi|529079184|ref|YP_008378187.1|	-	1.1e-21	76.7	0.6	3.2e-21	75.2	0.6	1.9	1	0	0	1	1	1	1	Elongation	Factor	G,	domain	II
GTP_EFTU_D2	PF03144.25	gi|529079184|ref|YP_008378187.1|	-	9e-17	61.2	1.7	4.5e-16	59.0	1.7	2.4	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|529079184|ref|YP_008378187.1|	-	1.5e-05	25.0	0.5	0.00013	22.0	0.1	2.5	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
SRPRB	PF09439.10	gi|529079184|ref|YP_008378187.1|	-	0.1	12.0	0.1	0.32	10.4	0.1	1.8	1	1	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
RsgA_GTPase	PF03193.16	gi|529079184|ref|YP_008378187.1|	-	0.18	11.7	1.3	1.3	9.0	0.0	2.7	3	1	0	3	3	3	0	RsgA	GTPase
Aldo_ket_red	PF00248.21	gi|529079185|ref|YP_008378188.1|	-	2.2e-73	247.0	0.0	2.5e-73	246.9	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
DUF2283	PF10049.9	gi|529079185|ref|YP_008378188.1|	-	0.59	10.4	2.5	4	7.7	0.1	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2283)
RHH_1	PF01402.21	gi|529079186|ref|YP_008378189.1|	-	0.0043	16.9	0.1	0.0066	16.3	0.1	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
IclR	PF01614.18	gi|529079186|ref|YP_008378189.1|	-	0.072	12.9	0.0	0.094	12.5	0.0	1.1	1	0	0	1	1	1	0	Bacterial	transcriptional	regulator
UPF0058	PF01893.16	gi|529079187|ref|YP_008378190.1|	-	1.3e-32	111.9	0.7	1.5e-32	111.7	0.7	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0058
Ada3	PF10198.9	gi|529079187|ref|YP_008378190.1|	-	0.079	13.1	0.0	0.088	13.0	0.0	1.1	1	0	0	1	1	1	0	Histone	acetyltransferases	subunit	3
ECH_1	PF00378.20	gi|529079188|ref|YP_008378191.1|	-	1.4e-39	135.9	0.0	1.6e-39	135.7	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|529079188|ref|YP_008378191.1|	-	1.1e-17	64.5	0.1	2.1e-17	63.6	0.1	1.3	1	1	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
FAD_binding_7	PF03441.14	gi|529079189|ref|YP_008378192.1|	-	2.9e-79	265.3	1.4	4e-79	264.8	1.4	1.2	1	0	0	1	1	1	1	FAD	binding	domain	of	DNA	photolyase
DNA_photolyase	PF00875.18	gi|529079189|ref|YP_008378192.1|	-	3.9e-47	160.3	0.3	8.8e-47	159.2	0.1	1.7	2	0	0	2	2	2	1	DNA	photolyase
DUF3813	PF12758.7	gi|529079189|ref|YP_008378192.1|	-	0.095	13.0	0.1	0.2	12.0	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3813)
Sod_Fe_N	PF00081.22	gi|529079190|ref|YP_008378193.1|	-	6.3e-30	103.5	1.2	1.2e-29	102.5	1.2	1.5	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	alpha-hairpin	domain
Sod_Fe_C	PF02777.18	gi|529079190|ref|YP_008378193.1|	-	1e-28	99.5	0.0	1.5e-28	99.0	0.0	1.2	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	C-terminal	domain
Lactamase_B	PF00753.27	gi|529079193|ref|YP_008378196.1|	-	1.8e-24	86.9	11.7	1e-23	84.4	11.7	1.8	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|529079193|ref|YP_008378196.1|	-	4.1e-06	26.5	2.5	5.4e-06	26.1	2.3	1.4	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|529079193|ref|YP_008378196.1|	-	3.9e-05	23.2	0.0	6.3e-05	22.5	0.0	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|529079193|ref|YP_008378196.1|	-	0.0059	16.5	1.9	0.015	15.2	1.9	1.8	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Phage_Coat_B	PF05356.11	gi|529079193|ref|YP_008378196.1|	-	0.018	14.9	0.1	0.029	14.3	0.1	1.3	1	0	0	1	1	1	0	Phage	Coat	protein	B
HalX	PF08663.10	gi|529079194|ref|YP_008378197.1|	-	2.1e-21	76.0	12.2	5.6e-21	74.6	12.2	1.8	1	0	0	1	1	1	1	HalX	domain
Response_reg	PF00072.24	gi|529079194|ref|YP_008378197.1|	-	4e-21	75.3	0.7	7.1e-21	74.5	0.2	1.7	2	0	0	2	2	2	1	Response	regulator	receiver	domain
ArnB_C	PF18677.1	gi|529079194|ref|YP_008378197.1|	-	0.017	15.2	1.5	0.026	14.6	1.5	1.4	1	0	0	1	1	1	0	Archaellum	regulatory	network	B,	C-terminal	domain
DUF3364	PF11844.8	gi|529079194|ref|YP_008378197.1|	-	0.062	13.5	0.8	1.6	9.1	0.4	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3364)
PCRF	PF03462.18	gi|529079194|ref|YP_008378197.1|	-	0.092	12.6	2.7	0.051	13.4	0.9	1.4	2	0	0	2	2	2	0	PCRF	domain
ATPase	PF06745.13	gi|529079195|ref|YP_008378198.1|	-	7.4e-05	22.2	0.3	0.00046	19.6	0.3	1.9	1	1	0	1	1	1	1	KaiC
Peptidase_M16_C	PF05193.21	gi|529079195|ref|YP_008378198.1|	-	0.17	11.9	0.0	0.57	10.2	0.0	1.8	2	0	0	2	2	2	0	Peptidase	M16	inactive	domain
DUF835	PF05763.12	gi|529079195|ref|YP_008378198.1|	-	0.22	11.3	0.0	0.29	10.8	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF835)
MMPL	PF03176.15	gi|529079196|ref|YP_008378199.1|	-	4.6e-14	52.1	8.1	6.2e-14	51.7	8.1	1.2	1	0	0	1	1	1	1	MMPL	family
Patched	PF02460.18	gi|529079196|ref|YP_008378199.1|	-	2.3e-09	36.0	1.9	2.9e-09	35.6	1.9	1.1	1	0	0	1	1	1	1	Patched	family
Sterol-sensing	PF12349.8	gi|529079196|ref|YP_008378199.1|	-	0.012	15.4	2.1	0.012	15.4	2.1	1.5	2	0	0	2	2	2	0	Sterol-sensing	domain	of	SREBP	cleavage-activation
Fijivirus_P9-2	PF06837.11	gi|529079196|ref|YP_008378199.1|	-	0.051	13.0	0.2	0.095	12.1	0.2	1.4	1	0	0	1	1	1	0	Fijivirus	P9-2	protein
ACR_tran	PF00873.19	gi|529079196|ref|YP_008378199.1|	-	0.17	9.5	11.0	0.15	9.7	10.3	1.3	1	1	0	1	1	1	0	AcrB/AcrD/AcrF	family
DUF3153	PF11353.8	gi|529079197|ref|YP_008378200.1|	-	0.022	14.3	0.5	0.032	13.8	0.3	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3153)
GvpK	PF05121.12	gi|529079197|ref|YP_008378200.1|	-	0.11	12.5	3.7	0.14	12.3	0.4	2.1	2	0	0	2	2	2	0	Gas	vesicle	protein	K
Thy1	PF02511.15	gi|529079198|ref|YP_008378201.1|	-	1.9e-56	190.9	0.0	2.2e-56	190.7	0.0	1.0	1	0	0	1	1	1	1	Thymidylate	synthase	complementing	protein
MreB_Mbl	PF06723.13	gi|529079199|ref|YP_008378202.1|	-	1.2e-05	24.3	0.1	4.9e-05	22.3	0.1	1.5	1	1	0	1	1	1	1	MreB/Mbl	protein
DNA_gyraseB	PF00204.25	gi|529079199|ref|YP_008378202.1|	-	0.0038	16.7	0.1	0.0059	16.1	0.1	1.2	1	0	0	1	1	1	1	DNA	gyrase	B
Mrr_cat	PF04471.12	gi|529079201|ref|YP_008378204.1|	-	1e-08	35.2	0.0	2.1e-08	34.2	0.0	1.6	1	0	0	1	1	1	1	Restriction	endonuclease
MIT	PF04212.18	gi|529079201|ref|YP_008378204.1|	-	0.0023	18.0	7.4	0.41	10.8	0.8	3.2	3	1	0	3	3	3	2	MIT	(microtubule	interacting	and	transport)	domain
DUF2564	PF10819.8	gi|529079201|ref|YP_008378204.1|	-	0.0097	16.3	12.9	1.9	8.9	0.2	3.8	2	1	1	3	3	3	2	Protein	of	unknown	function	(DUF2564)
bPH_3	PF14470.6	gi|529079201|ref|YP_008378204.1|	-	0.027	14.8	0.0	0.047	14.0	0.0	1.3	1	0	0	1	1	1	0	Bacterial	PH	domain
DUF2095	PF09868.9	gi|529079201|ref|YP_008378204.1|	-	0.12	12.4	0.4	0.25	11.3	0.4	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2095)
TPR_1	PF00515.28	gi|529079201|ref|YP_008378204.1|	-	5	7.1	6.6	1.6	8.7	0.6	3.0	3	0	0	3	3	3	0	Tetratricopeptide	repeat
DNA_binding_1	PF01035.20	gi|529079202|ref|YP_008378205.1|	-	1.6e-07	31.4	0.0	2.3e-07	30.8	0.0	1.3	1	0	0	1	1	1	1	6-O-methylguanine	DNA	methyltransferase,	DNA	binding	domain
Yip1	PF04893.17	gi|529079203|ref|YP_008378206.1|	-	0.0052	16.5	2.4	0.0063	16.2	2.4	1.0	1	0	0	1	1	1	1	Yip1	domain
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halorhabdus_tiamatea_SARL4B_uid214082/NC_021913-NC_021921.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halorhabdus_tiamatea_SARL4B_uid214082/NC_021913-NC_021921.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halorhabdus_tiamatea_SARL4B_uid214082/NC_021913-NC_021921.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halorhabdus_tiamatea_SARL4B_uid214082/NC_021913-NC_021921.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 13:02:09 2019
# [ok]