#                                                                        --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                    accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------          -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
Phage_integrase	PF00589.17	gi|109644368|ref|YP_659398.1|	-	1e-23	83.8	1.7	1.6e-23	83.2	1.2	1.3	1	1	0	1	1	1	1	Phage	integrase	family
HTH_8	PF02954.14	gi|109644368|ref|YP_659398.1|	-	0.021	14.3	0.1	5.1	6.7	0.0	3.3	3	0	0	3	3	3	0	Bacterial	regulatory	protein,	Fis	family
DUF3435	PF11917.3	gi|109644368|ref|YP_659398.1|	-	0.03	13.0	0.6	0.04	12.6	0.4	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3435)
RST	PF12174.3	gi|109644368|ref|YP_659398.1|	-	0.07	12.9	0.2	0.2	11.4	0.0	1.8	2	0	0	2	2	2	0	RCD1-SRO-TAF4	(RST)	plant	domain
DUF4636	PF15468.1	gi|109644370|ref|YP_659400.1|	-	0.081	12.3	0.0	0.13	11.7	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4636)
Yip1	PF04893.12	gi|109644371|ref|YP_659401.1|	-	3.3	7.1	24.4	3	7.3	12.3	2.9	1	1	1	2	2	2	0	Yip1	domain
bPH_2	PF03703.9	gi|109644372|ref|YP_659402.1|	-	0.0018	18.2	0.0	0.0029	17.6	0.0	1.4	1	0	0	1	1	1	1	Bacterial	PH	domain
DUF912	PF06024.7	gi|109644372|ref|YP_659402.1|	-	1.4	9.0	4.2	9.2	6.3	0.6	2.1	2	0	0	2	2	2	0	Nucleopolyhedrovirus	protein	of	unknown	function	(DUF912)
A2M_N	PF01835.14	gi|109644373|ref|YP_659403.1|	-	0.00037	20.6	0.2	0.0016	18.6	0.0	2.1	3	0	0	3	3	3	1	MG2	domain
Herpes_UL16	PF03044.9	gi|109644373|ref|YP_659403.1|	-	0.012	14.6	0.1	0.022	13.7	0.1	1.3	1	0	0	1	1	1	0	Herpesvirus	UL16/UL94	family
RHH_1	PF01402.16	gi|109644376|ref|YP_659406.1|	-	0.0047	16.7	0.0	0.0076	16.0	0.0	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
Arc	PF03869.9	gi|109644376|ref|YP_659406.1|	-	0.043	13.4	0.0	0.076	12.6	0.0	1.5	1	0	0	1	1	1	0	Arc-like	DNA	binding	domain
Antistasin	PF02822.9	gi|109644377|ref|YP_659407.1|	-	1.6	9.1	14.8	0.68	10.2	4.7	2.6	2	0	0	2	2	2	0	Antistasin	family
DUF3377	PF11857.3	gi|109644378|ref|YP_659408.1|	-	4	7.1	5.4	6.4	6.4	0.8	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3377)
Methyltransf_26	PF13659.1	gi|109644379|ref|YP_659409.1|	-	4.8e-10	39.5	0.0	1.4e-09	37.9	0.0	1.9	1	1	0	1	1	1	1	Methyltransferase	domain
N6_Mtase	PF02384.11	gi|109644379|ref|YP_659409.1|	-	3.3e-06	26.4	0.2	0.13	11.2	0.0	3.5	3	0	0	3	3	3	2	N-6	DNA	Methylase
Eco57I	PF07669.6	gi|109644379|ref|YP_659409.1|	-	9.1e-06	25.9	0.1	0.078	13.3	0.0	2.9	2	0	0	2	2	2	2	Eco57I	restriction-modification	methylase
UPF0020	PF01170.13	gi|109644379|ref|YP_659409.1|	-	0.14	11.6	0.0	1.2	8.6	0.0	2.3	2	0	0	2	2	2	0	Putative	RNA	methylase	family	UPF0020
PLDc_2	PF13091.1	gi|109644380|ref|YP_659410.1|	-	7.5e-23	80.6	0.2	1.3e-21	76.6	0.0	3.1	2	0	0	2	2	2	1	PLD-like	domain
Helicase_C	PF00271.26	gi|109644380|ref|YP_659410.1|	-	7.3e-15	54.6	0.3	2.7e-14	52.7	0.1	2.2	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.18	gi|109644380|ref|YP_659410.1|	-	1.5e-13	50.1	0.0	1.3e-12	47.1	0.0	2.1	1	1	0	1	1	1	1	SNF2	family	N-terminal	domain
ResIII	PF04851.10	gi|109644380|ref|YP_659410.1|	-	6.8e-10	39.0	1.4	4e-09	36.5	0.0	3.1	3	1	0	3	3	3	1	Type	III	restriction	enzyme,	res	subunit
DUF2075	PF09848.4	gi|109644380|ref|YP_659410.1|	-	0.00056	18.9	0.1	0.0025	16.8	0.0	2.1	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_22	PF13401.1	gi|109644380|ref|YP_659410.1|	-	0.012	15.7	0.0	0.052	13.6	0.0	2.2	1	0	0	1	1	1	0	AAA	domain
Lumazine_bd	PF12870.2	gi|109644382|ref|YP_659412.1|	-	0.051	13.6	0.3	0.06	13.4	0.2	1.1	1	0	0	1	1	1	0	Lumazine-binding	domain
OmpH	PF03938.9	gi|109644382|ref|YP_659412.1|	-	0.051	13.5	1.5	0.057	13.3	1.1	1.1	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
Surfac_D-trimer	PF09006.6	gi|109644382|ref|YP_659412.1|	-	0.33	10.7	2.1	4.5	7.0	1.4	2.2	1	1	0	1	1	1	0	Lung	surfactant	protein	D	coiled-coil	trimerisation
FlxA	PF14282.1	gi|109644382|ref|YP_659412.1|	-	0.37	10.7	3.1	0.61	10.0	2.1	1.6	1	1	0	1	1	1	0	FlxA-like	protein
DUF536	PF04394.9	gi|109644382|ref|YP_659412.1|	-	3.5	7.4	9.1	0.35	10.6	3.2	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF536
CheZ	PF04344.8	gi|109644383|ref|YP_659413.1|	-	0.041	13.5	0.0	0.053	13.1	0.0	1.1	1	0	0	1	1	1	0	Chemotaxis	phosphatase,	CheZ
LytR_C	PF13399.1	gi|109644383|ref|YP_659413.1|	-	0.05	13.9	1.1	1	9.7	0.1	2.2	1	1	0	2	2	2	0	LytR	cell	envelope-related	transcriptional	attenuator
zf-His_Me_endon	PF05551.6	gi|109644383|ref|YP_659413.1|	-	0.11	12.4	0.0	0.16	11.9	0.0	1.3	1	0	0	1	1	1	0	Zinc-binding	loop	region	of	homing	endonuclease
RNase_H	PF00075.19	gi|109644384|ref|YP_659414.1|	-	5.1e-11	43.0	0.2	5.8e-11	42.8	0.2	1.1	1	0	0	1	1	1	1	RNase	H
RVT_3	PF13456.1	gi|109644384|ref|YP_659414.1|	-	5.7e-10	38.8	0.1	9.4e-10	38.1	0.1	1.3	1	0	0	1	1	1	1	Reverse	transcriptase-like
PLC-beta_C	PF08703.5	gi|109644384|ref|YP_659414.1|	-	0.019	14.6	0.1	0.029	14.0	0.0	1.2	1	0	0	1	1	1	0	PLC-beta	C	terminal
HNH	PF01844.18	gi|109644385|ref|YP_659415.1|	-	2.5e-07	30.4	2.6	4.3e-07	29.6	1.8	1.4	1	0	0	1	1	1	1	HNH	endonuclease
ADH_N	PF08240.7	gi|109644385|ref|YP_659415.1|	-	0.05	13.3	0.2	0.12	12.1	0.0	1.6	2	0	0	2	2	2	0	Alcohol	dehydrogenase	GroES-like	domain
Endonuclease_7	PF02945.10	gi|109644385|ref|YP_659415.1|	-	0.2	11.4	5.6	0.38	10.4	0.2	2.2	1	1	1	2	2	2	0	Recombination	endonuclease	VII
zf-C2H2_6	PF13912.1	gi|109644385|ref|YP_659415.1|	-	0.24	11.3	0.4	0.24	11.3	0.3	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
Cytochrome_C7	PF14522.1	gi|109644385|ref|YP_659415.1|	-	0.58	9.8	7.4	1.5	8.4	5.1	1.7	1	1	0	1	1	1	0	Cytochrome	c7
Cytochrom_NNT	PF03264.9	gi|109644385|ref|YP_659415.1|	-	3	7.2	9.4	0.45	9.9	1.4	2.1	1	1	1	2	2	2	0	NapC/NirT	cytochrome	c	family,	N-terminal	region
D5_N	PF08706.6	gi|109644386|ref|YP_659416.1|	-	4.1e-10	39.9	0.0	1e-08	35.3	0.0	2.5	1	1	1	2	2	2	2	D5	N	terminal	like
CbiA	PF01656.18	gi|109644390|ref|YP_659420.1|	-	5.6e-21	74.8	0.0	7.3e-21	74.4	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MipZ	PF09140.6	gi|109644390|ref|YP_659420.1|	-	1e-10	41.1	0.1	1.8e-06	27.2	0.0	2.2	1	1	1	2	2	2	2	ATPase	MipZ
AAA_31	PF13614.1	gi|109644390|ref|YP_659420.1|	-	6.7e-09	35.8	0.0	6.4e-08	32.6	0.0	2.5	2	1	0	2	2	2	1	AAA	domain
YhjQ	PF06564.7	gi|109644390|ref|YP_659420.1|	-	4.1e-06	26.3	0.4	0.00048	19.5	0.1	2.2	2	0	0	2	2	2	2	YhjQ	protein
ArsA_ATPase	PF02374.10	gi|109644390|ref|YP_659420.1|	-	0.00051	19.1	0.8	0.00091	18.3	0.5	1.6	1	1	0	1	1	1	1	Anion-transporting	ATPase
AAA_19	PF13245.1	gi|109644390|ref|YP_659420.1|	-	0.041	13.6	0.0	0.12	12.1	0.0	1.8	1	0	0	1	1	1	0	Part	of	AAA	domain
Hydrolase_4	PF12146.3	gi|109644390|ref|YP_659420.1|	-	0.063	13.1	0.0	0.15	11.9	0.0	1.5	1	0	0	1	1	1	0	Putative	lysophospholipase
DUF853	PF05872.7	gi|109644390|ref|YP_659420.1|	-	0.088	11.1	0.2	0.13	10.6	0.1	1.3	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF853)
SRP54	PF00448.17	gi|109644390|ref|YP_659420.1|	-	0.29	10.5	2.4	0.61	9.4	0.1	2.5	3	1	0	3	3	3	0	SRP54-type	protein,	GTPase	domain
T2SF	PF00482.18	gi|109644391|ref|YP_659421.1|	-	0.011	15.6	0.2	0.015	15.1	0.1	1.4	1	1	0	1	1	1	0	Type	II	secretion	system	(T2SS),	protein	F
Nterm_IS4	PF13006.2	gi|109644391|ref|YP_659421.1|	-	0.011	15.7	0.0	0.017	15.1	0.0	1.3	1	0	0	1	1	1	0	Insertion	element	4	transposase	N-terminal
Pex19	PF04614.7	gi|109644391|ref|YP_659421.1|	-	0.029	14.0	1.2	0.037	13.6	0.9	1.2	1	0	0	1	1	1	0	Pex19	protein	family
Phage_int_SAM_1	PF02899.12	gi|109644391|ref|YP_659421.1|	-	0.08	13.1	0.0	0.18	11.9	0.0	1.7	1	1	0	1	1	1	0	Phage	integrase,	N-terminal	SAM-like	domain
DUF935	PF06074.7	gi|109644391|ref|YP_659421.1|	-	0.099	11.3	1.5	0.13	10.9	1.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF935)
RHH_1	PF01402.16	gi|109644391|ref|YP_659421.1|	-	1	9.3	0.1	1	9.3	0.0	3.5	5	0	0	5	5	5	0	Ribbon-helix-helix	protein,	copG	family
DUF4404	PF14357.1	gi|109644391|ref|YP_659421.1|	-	1.9	8.9	4.6	4.1	7.8	1.5	2.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4404)
AAA_assoc	PF14363.1	gi|109644394|ref|YP_659424.1|	-	0.088	12.8	0.0	0.15	12.0	0.0	1.5	1	1	0	1	1	1	0	Domain	associated	at	C-terminal	with	AAA
TAT_signal	PF10518.4	gi|109644394|ref|YP_659424.1|	-	0.12	12.3	2.7	0.25	11.4	1.9	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Mrr_cat	PF04471.7	gi|109644396|ref|YP_659426.1|	-	2.9e-24	85.1	0.1	5.3e-24	84.2	0.0	1.5	1	0	0	1	1	1	1	Restriction	endonuclease
WYL	PF13280.1	gi|109644396|ref|YP_659426.1|	-	3.7e-21	75.7	2.2	6.9e-20	71.6	0.2	2.5	2	1	0	2	2	2	1	WYL	domain
Mrr_cat_2	PF13156.1	gi|109644396|ref|YP_659426.1|	-	0.0076	16.1	0.2	0.019	14.8	0.1	1.7	2	0	0	2	2	2	1	Restriction	endonuclease
Mrr_cat	PF04471.7	gi|109644397|ref|YP_659427.1|	-	1.3e-24	86.2	0.0	1.8e-24	85.7	0.0	1.2	1	0	0	1	1	1	1	Restriction	endonuclease
Mrr_cat_2	PF13156.1	gi|109644397|ref|YP_659427.1|	-	2.9e-06	27.1	0.3	4.8e-06	26.4	0.2	1.3	1	0	0	1	1	1	1	Restriction	endonuclease
DUF4352	PF11611.3	gi|109644398|ref|YP_659428.1|	-	5.5e-10	39.4	0.1	1.5e-08	34.8	0.2	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4352)
CARDB	PF07705.6	gi|109644398|ref|YP_659428.1|	-	0.016	15.2	0.0	0.095	12.7	0.0	2.2	2	1	0	2	2	2	0	CARDB
DUF1883	PF08980.5	gi|109644398|ref|YP_659428.1|	-	0.057	12.9	0.1	15	5.1	0.0	2.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1883)
DUF4131	PF13567.1	gi|109644399|ref|YP_659429.1|	-	0.11	11.9	0.1	0.11	11.9	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
PIRT	PF15099.1	gi|109644399|ref|YP_659429.1|	-	6.5	5.9	5.5	10	5.3	3.8	1.3	1	0	0	1	1	1	0	Phosphoinositide-interacting	protein	family
DUF4352	PF11611.3	gi|109644400|ref|YP_659430.1|	-	6.3e-06	26.3	0.0	0.055	13.6	0.0	2.1	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4352)
Resolvase	PF00239.16	gi|109644401|ref|YP_659431.1|	-	5e-34	117.1	2.4	5e-34	117.1	1.7	1.7	2	0	0	2	2	2	1	Resolvase,	N	terminal	domain
HTH_28	PF13518.1	gi|109644401|ref|YP_659431.1|	-	0.0011	18.9	0.1	0.0027	17.6	0.1	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|109644401|ref|YP_659431.1|	-	0.012	15.1	0.1	0.04	13.5	0.1	1.9	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_24	PF13412.1	gi|109644401|ref|YP_659431.1|	-	0.031	13.6	0.2	0.061	12.7	0.1	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_3	PF01381.17	gi|109644401|ref|YP_659431.1|	-	0.082	12.7	0.1	0.19	11.5	0.1	1.6	1	0	0	1	1	1	0	Helix-turn-helix
GntR	PF00392.16	gi|109644401|ref|YP_659431.1|	-	0.12	11.8	0.5	0.48	9.8	0.2	2.1	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
Mg_chelatase_2	PF13335.1	gi|109644401|ref|YP_659431.1|	-	0.2	12.0	6.1	0.21	11.9	0.3	2.3	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
CAP	PF00188.21	gi|109644402|ref|YP_659432.1|	-	5.8e-15	55.8	0.4	8.4e-15	55.3	0.3	1.2	1	0	0	1	1	1	1	Cysteine-rich	secretory	protein	family
DUF217	PF02697.9	gi|109644403|ref|YP_659433.1|	-	0.00051	20.2	0.1	0.013	15.6	0.0	2.2	2	0	0	2	2	2	1	Uncharacterized	ACR,	COG1753