#Protein	Length	Domain	Domain_description	score	bias	c-Evalue	i-Evalue	hmmfrom	hmmto	alifrom	alito	envfrom 	envto	acc
gi|109644368|ref|YP_659398.1|	184	Phage_integrase	Phage	73.0	2.0	5.5e-24	2.5e-20	8	168	14	168	8	170	0.86
gi|109644368|ref|YP_659398.1|	184	DUF3435	Protein	12.5	0.6	1.2e-05	0.053	169	249	102	183	91	184	0.86
gi|109644368|ref|YP_659398.1|	184	HTH_8	Bacterial	-2.6	0.0	1.1	5.1e+03	2	10	9	17	8	20	0.76
gi|109644368|ref|YP_659398.1|	184	HTH_8	Bacterial	3.2	0.0	0.017	77	6	19	27	40	24	48	0.85
gi|109644368|ref|YP_659398.1|	184	HTH_8	Bacterial	6.1	0.1	0.0021	9.4	28	39	104	115	102	117	0.83
gi|109644368|ref|YP_659398.1|	184	HTH_8	Bacterial	-2.0	0.0	0.71	3.2e+03	5	23	124	142	122	143	0.75
gi|109644368|ref|YP_659398.1|	184	RST	RCD1-SRO-TAF4	10.9	0.1	7.3e-05	0.33	21	53	87	119	81	129	0.89
gi|109644368|ref|YP_659398.1|	184	RST	RCD1-SRO-TAF4	-3.0	0.1	1.6	7e+03	30	43	164	177	162	178	0.83
gi|109644371|ref|YP_659401.1|	250	Yip1	Yip1	-0.6	3.4	0.054	9.6e+02	102	142	43	93	35	104	0.57
gi|109644371|ref|YP_659401.1|	250	Yip1	Yip1	7.5	17.3	0.00017	3	52	166	110	224	79	237	0.73
gi|109644372|ref|YP_659402.1|	162	bPH_2	Bacterial	-0.2	0.9	0.066	1.2e+03	6	30	63	87	57	91	0.79
gi|109644372|ref|YP_659402.1|	162	bPH_2	Bacterial	14.8	0.0	1.3e-06	0.024	24	80	101	157	96	157	0.88
gi|109644373|ref|YP_659403.1|	467	MG2	MG2	19.2	0.0	6.9e-08	0.0012	20	96	201	276	196	276	0.84
gi|109644375|ref|YP_659405.1|	88	Caskin-tail	C-terminal	14.4	0.2	2.1e-06	0.037	5	46	42	83	41	85	0.94
gi|109644376|ref|YP_659406.1|	133	Arc	Arc-like	12.6	0.0	1e-05	0.092	8	34	5	31	1	43	0.86
gi|109644376|ref|YP_659406.1|	133	RHH_8	Ribbon-Helix-Helix	11.1	0.0	3.7e-05	0.33	15	48	13	46	2	61	0.84
gi|109644376|ref|YP_659406.1|	133	RHH_8	Ribbon-Helix-Helix	-3.4	0.0	1.2	1e+04	33	50	82	99	80	105	0.58
gi|109644378|ref|YP_659408.1|	115	Astro_capsid_p	Turkey	11.8	4.8	1.1e-05	0.097	228	288	5	63	1	72	0.76
gi|109644378|ref|YP_659408.1|	115	Motilin_assoc	Motilin/ghrelin-associated	5.0	0.3	0.0024	22	25	35	21	31	20	37	0.82
gi|109644378|ref|YP_659408.1|	115	Motilin_assoc	Motilin/ghrelin-associated	4.7	1.1	0.0029	26	25	35	39	49	28	59	0.82
gi|109644379|ref|YP_659409.1|	1208	N6_Mtase	N-6	9.7	0.0	5e-05	0.45	5	40	325	354	322	369	0.79
gi|109644379|ref|YP_659409.1|	1208	N6_Mtase	N-6	13.6	0.0	3.3e-06	0.03	45	100	420	512	405	536	0.86
gi|109644379|ref|YP_659409.1|	1208	N6_Mtase	N-6	1.5	0.0	0.017	1.5e+02	123	160	651	690	625	698	0.80
gi|109644379|ref|YP_659409.1|	1208	Eco57I	Eco57I	8.3	0.0	0.00036	3.2	3	19	654	670	651	694	0.79
gi|109644379|ref|YP_659409.1|	1208	Eco57I	Eco57I	9.4	0.0	0.00016	1.5	26	92	739	805	709	818	0.83
gi|109644380|ref|YP_659410.1|	1227	PLDc_2	PLD-like	86.1	0.0	8.3e-28	1.9e-24	4	133	29	198	26	198	0.93
gi|109644380|ref|YP_659410.1|	1227	PLDc_2	PLD-like	-1.6	0.0	1	2.3e+03	25	69	601	657	580	664	0.76
gi|109644380|ref|YP_659410.1|	1227	PLDc_2	PLD-like	-2.5	0.0	2	4.5e+03	22	49	889	930	883	960	0.64
gi|109644380|ref|YP_659410.1|	1227	Helicase_C	Helicase	1.8	0.2	0.13	3e+02	4	55	570	623	568	634	0.75
gi|109644380|ref|YP_659410.1|	1227	Helicase_C	Helicase	63.5	0.0	9e-21	2e-17	2	111	751	876	750	876	0.84
gi|109644380|ref|YP_659410.1|	1227	ResIII	Type	-2.7	0.0	2.3	5.2e+03	92	118	163	189	144	215	0.60
gi|109644380|ref|YP_659410.1|	1227	ResIII	Type	37.3	0.0	1.1e-12	2.6e-09	8	169	266	422	219	424	0.74
gi|109644380|ref|YP_659410.1|	1227	ResIII	Type	-3.4	0.1	3.8	8.5e+03	46	96	900	949	895	973	0.62
gi|109644380|ref|YP_659410.1|	1227	SNF2_N	SNF2	34.3	0.3	4.5e-12	1e-08	50	281	275	514	223	534	0.76
gi|109644380|ref|YP_659410.1|	1227	DUF2075	Uncharacterized	-2.4	0.1	0.97	2.2e+03	218	218	150	150	89	233	0.50
gi|109644380|ref|YP_659410.1|	1227	DUF2075	Uncharacterized	19.1	0.0	2.8e-07	0.00063	4	122	283	404	281	410	0.76
gi|109644380|ref|YP_659410.1|	1227	DUF2075	Uncharacterized	-1.9	0.0	0.68	1.5e+03	30	77	1153	1203	1139	1213	0.80
gi|109644380|ref|YP_659410.1|	1227	SWI2_SNF2	SWI2/SNF2	-3.4	0.0	2.8	6.3e+03	160	178	223	241	221	245	0.80
gi|109644380|ref|YP_659410.1|	1227	SWI2_SNF2	SWI2/SNF2	18.4	0.0	5.8e-07	0.0013	89	162	340	427	266	515	0.72
gi|109644380|ref|YP_659410.1|	1227	AAA_22	AAA	11.5	0.0	0.00012	0.27	14	105	289	385	279	422	0.80
gi|109644380|ref|YP_659410.1|	1227	Latarcin	Latarcin	0.1	0.0	0.5	1.1e+03	19	52	94	220	50	243	0.51
gi|109644380|ref|YP_659410.1|	1227	Latarcin	Latarcin	1.1	0.0	0.24	5.4e+02	29	66	591	632	469	656	0.61
gi|109644380|ref|YP_659410.1|	1227	Latarcin	Latarcin	-1.3	0.2	1.3	3e+03	39	60	941	967	857	987	0.66
gi|109644380|ref|YP_659410.1|	1227	Latarcin	Latarcin	3.7	5.5	0.036	80	7	61	1101	1154	1096	1182	0.89
gi|109644382|ref|YP_659412.1|	81	LPD26	Large	17.7	0.0	2.9e-07	0.0026	9	53	8	56	4	57	0.86
gi|109644382|ref|YP_659412.1|	81	HIP1_clath_bdg	Clathrin-binding	15.7	0.9	1.9e-06	0.017	16	65	30	80	21	81	0.82
gi|109644383|ref|YP_659413.1|	116	CheZ	Chemotaxis	16.1	0.0	1.3e-06	0.008	86	146	12	72	4	100	0.90
gi|109644383|ref|YP_659413.1|	116	LytR_C	LytR	12.0	0.2	5.2e-05	0.31	4	62	8	69	7	74	0.69
gi|109644383|ref|YP_659413.1|	116	LytR_C	LytR	4.8	0.1	0.0096	57	16	59	62	96	58	115	0.60
gi|109644383|ref|YP_659413.1|	116	zf-His_Me_endon	Zinc-binding	11.9	0.0	3.3e-05	0.19	76	95	2	21	1	38	0.87
gi|109644384|ref|YP_659414.1|	148	RVT_3	Reverse	42.5	0.1	8.4e-15	5e-11	7	123	21	144	12	145	0.82
gi|109644384|ref|YP_659414.1|	148	RNase_H	RNase	38.5	0.3	1.9e-13	1.2e-09	3	142	7	146	5	147	0.65
gi|109644384|ref|YP_659414.1|	148	PLC-beta_C	PLC-beta	13.1	0.0	1.2e-05	0.071	20	61	92	133	86	135	0.89
gi|109644385|ref|YP_659415.1|	163	HNH	HNH	30.9	2.7	7.6e-11	2.3e-07	1	45	31	75	31	77	0.98
gi|109644385|ref|YP_659415.1|	163	HNH_5	HNH	16.5	1.3	1.9e-06	0.0057	1	44	31	75	28	83	0.86
gi|109644385|ref|YP_659415.1|	163	ADH_N	Alcohol	-1.8	0.1	0.95	2.8e+03	69	75	30	36	15	43	0.69
gi|109644385|ref|YP_659415.1|	163	ADH_N	Alcohol	12.3	0.4	3.8e-05	0.11	46	83	46	83	43	93	0.88
gi|109644385|ref|YP_659415.1|	163	Cytochrome_C7	Cytochrome	9.9	5.7	0.00023	0.69	32	73	13	72	2	72	0.63
gi|109644385|ref|YP_659415.1|	163	Endonuclease_7	Recombination	10.4	0.3	0.00015	0.46	6	46	10	50	5	57	0.69
gi|109644385|ref|YP_659415.1|	163	Endonuclease_7	Recombination	3.3	0.8	0.026	79	18	36	59	77	51	84	0.73
gi|109644385|ref|YP_659415.1|	163	zf-trcl	Probable	2.9	0.3	0.034	1e+02	4	14	28	38	25	43	0.83
gi|109644385|ref|YP_659415.1|	163	zf-trcl	Probable	9.4	0.8	0.00033	0.98	29	47	60	78	51	79	0.86
gi|109644386|ref|YP_659416.1|	649	D5_N	D5	33.8	0.1	4e-12	3.6e-08	99	148	229	278	169	282	0.82
gi|109644386|ref|YP_659416.1|	649	D5_N	D5	2.9	0.0	0.014	1.2e+02	29	78	279	321	272	331	0.83
gi|109644386|ref|YP_659416.1|	649	AAA_23	AAA	-0.9	0.0	0.22	2e+03	106	142	192	226	104	276	0.67
gi|109644386|ref|YP_659416.1|	649	AAA_23	AAA	11.6	0.0	3.3e-05	0.29	21	107	308	406	305	542	0.71
gi|109644389|ref|YP_659419.1|	266	Macoilin	Macoilin	9.6	0.6	1.6e-05	0.29	282	363	18	102	5	183	0.60
gi|109644390|ref|YP_659420.1|	314	AAA_31	AAA	76.4	0.0	1.4e-24	2.4e-21	5	176	11	207	7	208	0.77
gi|109644390|ref|YP_659420.1|	314	CbiA	CobQ/CobB/MinD/ParA	46.3	0.0	2.3e-15	4.1e-12	5	105	14	236	10	259	0.88
gi|109644390|ref|YP_659420.1|	314	MipZ	ATPase	26.4	0.0	2.1e-09	3.9e-06	8	103	15	109	9	122	0.86
gi|109644390|ref|YP_659420.1|	314	MipZ	ATPase	13.4	0.0	1.9e-05	0.034	78	130	128	179	110	201	0.78
gi|109644390|ref|YP_659420.1|	314	CBP_BcsQ	Cellulose	21.4	0.4	7.8e-08	0.00014	10	39	16	45	14	51	0.94
gi|109644390|ref|YP_659420.1|	314	CBP_BcsQ	Cellulose	3.4	0.0	0.025	44	95	147	125	177	91	240	0.73
gi|109644390|ref|YP_659420.1|	314	ArsA_ATPase	Anion-transporting	18.8	0.1	4e-07	0.00072	5	37	12	44	8	99	0.84
gi|109644390|ref|YP_659420.1|	314	ArsA_ATPase	Anion-transporting	-3.0	0.0	1.8	3.2e+03	163	163	206	206	168	252	0.58
gi|109644390|ref|YP_659420.1|	314	ParA	NUBPL	17.0	0.2	1.8e-06	0.0031	7	40	11	44	6	68	0.88
gi|109644390|ref|YP_659420.1|	314	ParA	NUBPL	-1.8	0.1	0.96	1.7e+03	111	120	148	157	138	164	0.86
gi|109644390|ref|YP_659420.1|	314	Myb_DNA-binding	Myb-like	12.0	0.0	9.9e-05	0.18	18	34	77	93	63	96	0.86
gi|109644390|ref|YP_659420.1|	314	DUF853	Bacterial	10.6	0.2	8.4e-05	0.15	20	70	7	57	1	87	0.80
gi|109644390|ref|YP_659420.1|	314	SRP54	SRP54-type	9.6	0.1	0.00037	0.66	8	35	15	42	8	46	0.87
gi|109644390|ref|YP_659420.1|	314	SRP54	SRP54-type	-0.9	0.0	0.58	1e+03	83	97	148	162	139	221	0.58
gi|109644390|ref|YP_659420.1|	314	SRP54	SRP54-type	-2.0	0.1	1.3	2.2e+03	36	55	274	293	268	308	0.76
gi|109644390|ref|YP_659420.1|	314	AAA_25	AAA	5.0	2.6	0.0091	16	41	65	16	41	6	178	0.80
gi|109644390|ref|YP_659420.1|	314	AAA_25	AAA	1.4	0.0	0.11	2e+02	60	104	256	296	246	312	0.72
gi|109644391|ref|YP_659421.1|	130	Nterm_IS4	Insertion	17.0	0.0	8.4e-07	0.005	39	86	60	106	33	110	0.78
gi|109644391|ref|YP_659421.1|	130	T2SSF	Type	14.4	0.1	4.7e-06	0.028	26	106	29	102	9	107	0.83
gi|109644391|ref|YP_659421.1|	130	RHH_1	Ribbon-helix-helix	3.6	0.3	0.011	67	7	20	2	15	1	18	0.87
gi|109644391|ref|YP_659421.1|	130	RHH_1	Ribbon-helix-helix	-1.7	0.2	0.53	3.2e+03	7	15	37	45	35	46	0.64
gi|109644391|ref|YP_659421.1|	130	RHH_1	Ribbon-helix-helix	-1.4	0.2	0.43	2.6e+03	11	18	61	68	57	76	0.56
gi|109644391|ref|YP_659421.1|	130	RHH_1	Ribbon-helix-helix	9.3	0.0	0.00018	1.1	22	34	92	104	89	107	0.89
gi|109644391|ref|YP_659421.1|	130	RHH_1	Ribbon-helix-helix	-0.4	0.0	0.21	1.2e+03	8	22	112	126	111	129	0.76
gi|109644394|ref|YP_659424.1|	150	AIM3	Altered	15.0	0.1	2.1e-06	0.037	5	62	14	71	12	85	0.78
gi|109644396|ref|YP_659426.1|	329	Mrr_cat	Restriction	80.8	0.1	1.2e-26	7.2e-23	4	114	1	108	1	109	0.93
gi|109644396|ref|YP_659426.1|	329	WYL	WYL	3.1	0.1	0.015	88	113	143	17	46	2	50	0.77
gi|109644396|ref|YP_659426.1|	329	WYL	WYL	-2.2	0.0	0.64	3.8e+03	83	112	62	94	51	106	0.56
gi|109644396|ref|YP_659426.1|	329	WYL	WYL	67.7	1.1	2.1e-22	1.2e-18	4	88	154	238	153	308	0.88
gi|109644396|ref|YP_659426.1|	329	Mrr_cat_2	Restriction	54.1	0.3	2.3e-18	1.4e-14	7	113	6	108	1	121	0.85
gi|109644396|ref|YP_659426.1|	329	Mrr_cat_2	Restriction	-0.1	0.0	0.13	7.8e+02	66	100	268	302	231	309	0.84
gi|109644397|ref|YP_659427.1|	230	Mrr_cat_2	Restriction	85.5	0.5	2.9e-28	2.6e-24	2	121	16	134	15	140	0.93
gi|109644397|ref|YP_659427.1|	230	Mrr_cat	Restriction	77.3	0.0	9.5e-26	8.5e-22	2	114	14	126	13	127	0.92
gi|109644398|ref|YP_659428.1|	307	DUF4352	Domain	3.9	0.0	0.01	62	37	57	73	93	60	104	0.89
gi|109644398|ref|YP_659428.1|	307	DUF4352	Domain	30.1	0.2	8.3e-11	5e-07	23	110	192	285	184	300	0.75
gi|109644398|ref|YP_659428.1|	307	CARDB	CARDB	13.0	0.0	1.5e-05	0.091	11	60	66	120	61	130	0.80
gi|109644398|ref|YP_659428.1|	307	CARDB	CARDB	-0.8	0.0	0.3	1.8e+03	50	72	257	279	196	291	0.67
gi|109644398|ref|YP_659428.1|	307	DUF3558	Protein	12.3	2.0	2e-05	0.12	2	35	21	54	20	67	0.85
gi|109644399|ref|YP_659429.1|	107	Phage_holin_2_4	Bacteriophage	8.8	5.2	7.5e-05	1.3	18	49	25	55	15	62	0.89
gi|109644400|ref|YP_659430.1|	184	DUF4352	Domain	8.4	0.0	0.00014	2.5	6	59	42	96	36	99	0.86
gi|109644400|ref|YP_659430.1|	184	DUF4352	Domain	10.8	0.0	2.6e-05	0.47	60	115	117	172	108	178	0.76
gi|109644401|ref|YP_659431.1|	218	Resolvase	Resolvase,	120.9	2.6	2e-38	4.6e-35	1	144	3	150	3	152	0.94
gi|109644401|ref|YP_659431.1|	218	Resolvase	Resolvase,	-1.2	0.0	0.86	1.9e+03	115	136	175	196	162	206	0.76
gi|109644401|ref|YP_659431.1|	218	HTH_29	Winged	14.9	0.2	8.8e-06	0.02	10	34	187	210	178	212	0.85
gi|109644401|ref|YP_659431.1|	218	HTH_23	Homeodomain-like	13.2	0.2	2.5e-05	0.057	17	39	188	210	174	214	0.86
gi|109644401|ref|YP_659431.1|	218	Mg_chelatase_C	Magnesium	14.6	0.3	1.7e-05	0.038	37	79	47	89	5	107	0.72
gi|109644401|ref|YP_659431.1|	218	Mg_chelatase_C	Magnesium	3.9	1.3	0.037	83	5	65	137	208	133	210	0.71
gi|109644401|ref|YP_659431.1|	218	HTH_28	Helix-turn-helix	13.9	0.1	2e-05	0.046	4	34	179	210	179	214	0.90
gi|109644401|ref|YP_659431.1|	218	Phage_NinH	Phage	11.7	0.2	7.9e-05	0.18	18	38	190	210	174	214	0.81
gi|109644401|ref|YP_659431.1|	218	HTH_3	Helix-turn-helix	11.5	0.1	0.0001	0.23	10	32	189	211	186	215	0.90
gi|109644401|ref|YP_659431.1|	218	SurA_N_3	SurA	0.2	0.1	0.25	5.7e+02	108	124	11	27	6	46	0.60
gi|109644401|ref|YP_659431.1|	218	SurA_N_3	SurA	10.6	0.5	0.00016	0.35	60	123	147	215	116	217	0.71
gi|109644402|ref|YP_659432.1|	222	CAP	Cysteine-rich	45.8	0.3	5.4e-16	9.7e-12	3	126	90	220	88	220	0.87
gi|109644403|ref|YP_659433.1|	164	VAPB_antitox	Putative	14.7	0.1	2.2e-06	0.04	1	33	5	37	5	53	0.85
gi|109644403|ref|YP_659433.1|	164	VAPB_antitox	Putative	-1.0	0.0	0.18	3.3e+03	37	52	116	131	110	149	0.79