# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|110666977|ref|YP_656788.1| - 9.2e-28 95.8 0.3 2.9e-27 94.1 0.2 1.9 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|110666977|ref|YP_656788.1| - 5.3e-10 39.5 0.5 1.1e-08 35.2 0.0 2.4 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|110666977|ref|YP_656788.1| - 2.2e-09 37.5 0.4 5.7e-07 29.7 0.3 2.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|110666977|ref|YP_656788.1| - 8.2e-09 35.7 0.1 0.00082 19.5 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|110666977|ref|YP_656788.1| - 0.00063 18.6 0.1 0.0012 17.7 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain Arch_ATPase PF01637.13 gi|110666977|ref|YP_656788.1| - 0.00063 19.5 0.0 0.0026 17.4 0.0 1.9 1 1 0 1 1 1 1 Archaeal ATPase T2SE PF00437.15 gi|110666977|ref|YP_656788.1| - 0.00068 18.6 0.0 0.0011 17.8 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein Sigma54_activat PF00158.21 gi|110666977|ref|YP_656788.1| - 0.002 17.6 0.0 0.0045 16.4 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_17 PF13207.1 gi|110666977|ref|YP_656788.1| - 0.0024 18.6 0.1 0.011 16.6 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|110666977|ref|YP_656788.1| - 0.0027 18.0 0.3 0.02 15.1 0.0 2.5 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|110666977|ref|YP_656788.1| - 0.0033 16.3 0.0 0.0077 15.1 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) DEAD PF00270.24 gi|110666977|ref|YP_656788.1| - 0.0041 16.6 1.2 1.4 8.3 0.0 2.7 3 0 0 3 3 3 2 DEAD/DEAH box helicase AAA_2 PF07724.9 gi|110666977|ref|YP_656788.1| - 0.0071 16.2 0.1 3.1 7.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|110666977|ref|YP_656788.1| - 0.011 14.7 0.0 0.024 13.6 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus ABC_tran PF00005.22 gi|110666977|ref|YP_656788.1| - 0.011 16.0 0.4 0.041 14.1 0.0 2.1 2 0 0 2 2 2 0 ABC transporter GHL13 PF14883.1 gi|110666977|ref|YP_656788.1| - 0.02 14.0 0.0 0.045 12.8 0.0 1.6 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase family 13 ToxN_toxin PF13958.1 gi|110666977|ref|YP_656788.1| - 0.043 13.4 0.3 0.1 12.2 0.2 1.6 1 0 0 1 1 1 0 Toxin ToxN, type III toxin-antitoxin system AAA_24 PF13479.1 gi|110666977|ref|YP_656788.1| - 0.044 13.3 0.0 0.084 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|110666977|ref|YP_656788.1| - 0.092 12.9 0.0 0.26 11.4 0.0 1.9 1 0 0 1 1 1 0 RNA helicase Peptidase_S24 PF00717.18 gi|110666978|ref|YP_656789.1| - 0.0012 18.4 0.0 0.0023 17.5 0.0 1.5 1 0 0 1 1 1 1 Peptidase S24-like DNA_pol_E_B PF04042.11 gi|110666979|ref|YP_656790.1| - 5e-13 48.7 0.0 8e-13 48.1 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|110666979|ref|YP_656790.1| - 1e-11 44.9 0.1 1.9e-11 44.0 0.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|110666979|ref|YP_656790.1| - 1.3e-05 24.7 2.1 2.9e-05 23.5 1.4 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Colicin_M PF14859.1 gi|110666979|ref|YP_656790.1| - 0.018 13.9 0.2 0.03 13.2 0.1 1.2 1 0 0 1 1 1 0 Colicin M tRNA_anti-codon PF01336.20 gi|110666979|ref|YP_656790.1| - 0.024 14.5 0.0 0.056 13.3 0.0 1.6 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain AA_kinase PF00696.23 gi|110666981|ref|YP_656792.1| - 1e-47 162.7 5.4 3.5e-47 160.9 1.5 2.1 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.1 gi|110666981|ref|YP_656792.1| - 3.6e-15 55.2 1.1 1.5e-07 30.8 0.1 2.7 2 0 0 2 2 2 2 ACT domain ACT PF01842.20 gi|110666981|ref|YP_656792.1| - 4.1e-10 38.9 1.4 1.8e-06 27.3 0.1 2.7 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|110666981|ref|YP_656792.1| - 6.5e-05 23.1 0.8 0.27 11.5 0.0 2.7 1 1 2 3 3 3 2 ACT domain ACT_6 PF13740.1 gi|110666981|ref|YP_656792.1| - 0.056 13.1 0.5 0.94 9.2 0.1 2.6 2 1 0 2 2 2 0 ACT domain IMP_cyclohyd PF07826.6 gi|110666982|ref|YP_656793.1| - 1.6e-60 203.9 0.3 1.8e-60 203.6 0.2 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein CGI-121 PF08617.5 gi|110666983|ref|YP_656794.1| - 1e-19 70.7 0.0 1.2e-19 70.5 0.0 1.0 1 0 0 1 1 1 1 Kinase binding protein CGI-121 NodS PF05401.6 gi|110666983|ref|YP_656794.1| - 0.0055 16.1 0.0 0.0083 15.5 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) DEAD PF00270.24 gi|110666984|ref|YP_656795.1| - 3.1e-24 85.3 0.0 6.2e-24 84.3 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|110666984|ref|YP_656795.1| - 2.6e-06 27.5 1.9 6.6e-06 26.1 0.6 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|110666984|ref|YP_656795.1| - 1.5e-05 24.7 0.0 3.8e-05 23.4 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.4 gi|110666984|ref|YP_656795.1| - 0.00087 18.7 0.0 0.0021 17.5 0.0 1.6 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|110666984|ref|YP_656795.1| - 0.014 15.0 0.0 0.33 10.7 0.0 2.8 2 0 0 2 2 2 0 Helix-hairpin-helix motif IMS_HHH PF11798.3 gi|110666984|ref|YP_656795.1| - 0.051 13.6 0.1 0.21 11.6 0.0 2.1 2 0 0 2 2 2 0 IMS family HHH motif DUF897 PF05982.7 gi|110666986|ref|YP_656797.1| - 0.27 9.9 2.8 0.3 9.8 2.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF897) CytB6-F_Fe-S PF08802.5 gi|110666986|ref|YP_656797.1| - 7.7 6.6 6.1 2.2 8.3 1.6 1.9 1 1 1 2 2 2 0 Cytochrome B6-F complex Fe-S subunit AAA PF00004.24 gi|110666987|ref|YP_656798.1| - 1.2e-60 203.5 0.0 2.6e-46 157.0 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|110666987|ref|YP_656798.1| - 4.3e-12 45.9 0.0 1.2e-07 31.5 0.0 2.9 2 1 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|110666987|ref|YP_656798.1| - 1.7e-10 41.1 0.2 0.001 19.1 0.0 3.8 2 2 1 4 4 3 2 AAA domain AAA_2 PF07724.9 gi|110666987|ref|YP_656798.1| - 3.7e-10 39.9 0.0 9.5e-05 22.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.12 gi|110666987|ref|YP_656798.1| - 1e-08 34.6 0.0 2.6e-08 33.3 0.0 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.1 gi|110666987|ref|YP_656798.1| - 2.6e-08 34.0 4.1 0.0017 18.3 0.3 3.8 2 2 0 2 2 2 2 AAA ATPase domain NACHT PF05729.7 gi|110666987|ref|YP_656798.1| - 1.3e-07 31.4 2.6 0.06 13.0 0.7 3.9 3 1 0 3 3 3 2 NACHT domain AAA_17 PF13207.1 gi|110666987|ref|YP_656798.1| - 7.3e-07 30.0 0.1 0.0016 19.2 0.0 2.8 2 2 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|110666987|ref|YP_656798.1| - 9e-07 28.1 0.0 0.00014 20.9 0.0 2.8 3 0 0 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|110666987|ref|YP_656798.1| - 1.2e-06 28.4 0.0 0.0033 17.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|110666987|ref|YP_656798.1| - 2.3e-06 27.1 0.0 0.0095 15.3 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_19 PF13245.1 gi|110666987|ref|YP_656798.1| - 3e-06 26.8 0.8 0.0059 16.3 0.0 3.1 3 0 0 3 3 2 2 Part of AAA domain Zeta_toxin PF06414.7 gi|110666987|ref|YP_656798.1| - 4.1e-06 26.0 0.0 0.0022 17.1 0.0 2.5 2 0 0 2 2 2 1 Zeta toxin AAA_33 PF13671.1 gi|110666987|ref|YP_656798.1| - 7.6e-06 25.8 1.7 0.0015 18.4 0.0 3.0 2 2 0 2 2 2 1 AAA domain AAA_3 PF07726.6 gi|110666987|ref|YP_656798.1| - 1e-05 25.1 0.0 0.096 12.2 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|110666987|ref|YP_656798.1| - 1.3e-05 24.2 0.0 0.012 14.5 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|110666987|ref|YP_656798.1| - 5.1e-05 22.8 0.0 0.11 11.9 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain Bac_DnaA PF00308.13 gi|110666987|ref|YP_656798.1| - 6.7e-05 22.6 0.0 0.02 14.5 0.0 2.7 3 1 0 3 3 2 1 Bacterial dnaA protein AAA_30 PF13604.1 gi|110666987|ref|YP_656798.1| - 0.00013 21.6 0.5 0.42 10.1 0.1 2.6 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|110666987|ref|YP_656798.1| - 0.0002 20.8 3.0 0.099 12.0 0.1 3.5 2 2 1 3 3 3 1 AAA domain AAA_24 PF13479.1 gi|110666987|ref|YP_656798.1| - 0.00024 20.7 0.2 0.022 14.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|110666987|ref|YP_656798.1| - 0.00069 18.8 0.1 0.0067 15.6 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|110666987|ref|YP_656798.1| - 0.00091 19.3 0.0 0.3 11.2 0.0 2.9 3 0 0 3 3 2 1 RNA helicase AAA_28 PF13521.1 gi|110666987|ref|YP_656798.1| - 0.0012 18.8 0.0 0.015 15.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|110666987|ref|YP_656798.1| - 0.0016 18.1 0.0 1.2 8.7 0.0 2.9 3 0 0 3 3 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_18 PF13238.1 gi|110666987|ref|YP_656798.1| - 0.0017 18.6 0.0 0.39 11.0 0.0 2.5 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|110666987|ref|YP_656798.1| - 0.004 17.4 0.1 2.2 8.5 0.0 2.9 2 1 0 2 2 2 1 ABC transporter DAP3 PF10236.4 gi|110666987|ref|YP_656798.1| - 0.0059 15.5 0.0 1.6 7.5 0.0 2.3 2 0 0 2 2 2 1 Mitochondrial ribosomal death-associated protein 3 TIP49 PF06068.8 gi|110666987|ref|YP_656798.1| - 0.011 14.5 0.0 0.11 11.2 0.0 2.1 2 0 0 2 2 2 0 TIP49 C-terminus Sigma54_activ_2 PF14532.1 gi|110666987|ref|YP_656798.1| - 0.023 14.7 0.0 0.31 11.0 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|110666987|ref|YP_656798.1| - 0.031 13.9 0.0 4.2 6.9 0.0 2.7 2 2 0 2 2 2 0 Archaeal ATPase KAP_NTPase PF07693.9 gi|110666987|ref|YP_656798.1| - 0.035 13.0 0.0 5.6 5.8 0.0 3.0 2 1 0 3 3 3 0 KAP family P-loop domain KaiC PF06745.8 gi|110666987|ref|YP_656798.1| - 0.036 13.1 1.3 2.9 6.9 0.0 3.2 2 1 1 3 3 3 0 KaiC DUF258 PF03193.11 gi|110666987|ref|YP_656798.1| - 0.038 13.1 0.0 0.8 8.8 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|110666987|ref|YP_656798.1| - 0.042 13.3 0.1 6.9 6.2 0.0 2.6 2 0 0 2 2 2 0 P-loop containing region of AAA domain PhoH PF02562.11 gi|110666987|ref|YP_656798.1| - 0.051 12.8 0.2 0.62 9.2 0.1 2.4 2 0 0 2 2 2 0 PhoH-like protein Hpr_kinase_C PF07475.7 gi|110666987|ref|YP_656798.1| - 0.054 12.8 0.0 1.4 8.2 0.0 2.3 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain Elong_Iki1 PF10483.4 gi|110666987|ref|YP_656798.1| - 0.055 12.8 0.3 0.36 10.1 0.2 2.0 1 1 0 1 1 1 0 Elongator subunit Iki1 NTPase_1 PF03266.10 gi|110666987|ref|YP_656798.1| - 0.057 13.1 0.0 2.1 8.0 0.0 2.5 2 0 0 2 2 2 0 NTPase AFG1_ATPase PF03969.11 gi|110666987|ref|YP_656798.1| - 0.12 11.1 0.0 7.7 5.2 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase Parvo_NS1 PF01057.12 gi|110666987|ref|YP_656798.1| - 0.13 11.0 0.0 0.22 10.3 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 NB-ARC PF00931.17 gi|110666987|ref|YP_656798.1| - 0.15 10.8 0.0 1.4 7.6 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain DUF371 PF04027.8 gi|110666987|ref|YP_656798.1| - 0.19 11.3 3.1 5.1 6.7 0.1 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF371) OrfB_IS605 PF01385.14 gi|110666988|ref|YP_656799.1| - 2.4e-47 161.2 0.0 3.2e-47 160.8 0.0 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|110666988|ref|YP_656799.1| - 2.1e-21 75.3 1.5 2.1e-21 75.3 1.0 2.3 2 0 0 2 2 2 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|110666988|ref|YP_656799.1| - 0.017 14.4 3.9 0.022 14.0 1.6 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding DUF3791 PF12668.2 gi|110666988|ref|YP_656799.1| - 0.11 12.1 0.1 0.32 10.6 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3791) C1_2 PF03107.11 gi|110666988|ref|YP_656799.1| - 0.22 11.6 3.7 0.65 10.1 2.6 1.8 1 0 0 1 1 1 0 C1 domain A2L_zn_ribbon PF08792.5 gi|110666988|ref|YP_656799.1| - 1.2 8.6 7.1 0.28 10.6 2.4 1.8 2 0 0 2 2 2 0 A2L zinc ribbon domain RRN7 PF11781.3 gi|110666988|ref|YP_656799.1| - 1.4 8.5 5.8 1.5 8.3 2.9 1.9 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF897 PF05982.7 gi|110666989|ref|YP_656800.1| - 0.0043 15.8 1.0 0.0045 15.8 0.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF897) SHP PF03579.8 gi|110666989|ref|YP_656800.1| - 0.066 12.5 0.7 0.066 12.5 0.5 1.4 2 0 0 2 2 2 0 Small hydrophobic protein Bac_rhodopsin PF01036.13 gi|110666990|ref|YP_656801.1| - 2.6e-66 223.1 20.4 3e-66 222.9 14.1 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein DUF4260 PF14079.1 gi|110666990|ref|YP_656801.1| - 0.87 9.4 7.0 0.2 11.4 1.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4260) TF_Zn_Ribbon PF08271.7 gi|110666991|ref|YP_656802.1| - 0.00054 19.2 0.4 0.028 13.7 0.3 2.5 1 1 1 2 2 2 2 TFIIB zinc-binding Fib_alpha PF08702.5 gi|110666991|ref|YP_656802.1| - 0.0023 18.0 0.6 0.003 17.6 0.4 1.1 1 0 0 1 1 1 1 Fibrinogen alpha/beta chain family SlyX PF04102.7 gi|110666991|ref|YP_656802.1| - 0.0063 16.8 0.1 0.011 16.0 0.1 1.3 1 0 0 1 1 1 1 SlyX Zn-ribbon_8 PF09723.5 gi|110666991|ref|YP_656802.1| - 0.015 15.2 1.6 1.8 8.5 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain ADK_lid PF05191.9 gi|110666991|ref|YP_656802.1| - 0.019 14.6 3.2 0.74 9.5 0.2 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid C1_1 PF00130.17 gi|110666991|ref|YP_656802.1| - 0.02 14.6 0.2 0.027 14.2 0.1 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DivIC PF04977.10 gi|110666991|ref|YP_656802.1| - 0.046 13.2 0.6 0.071 12.6 0.4 1.2 1 0 0 1 1 1 0 Septum formation initiator Med9 PF07544.8 gi|110666991|ref|YP_656802.1| - 0.047 13.4 0.6 0.092 12.4 0.4 1.5 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 zinc_ribbon_5 PF13719.1 gi|110666991|ref|YP_656802.1| - 0.21 11.2 0.3 0.21 11.2 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.21 gi|110666991|ref|YP_656802.1| - 0.25 11.7 2.5 2.7 8.5 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type UPF0547 PF10571.4 gi|110666991|ref|YP_656802.1| - 0.27 10.9 2.5 0.56 9.9 1.8 1.5 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.1 gi|110666991|ref|YP_656802.1| - 0.28 10.8 0.4 0.28 10.8 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Transposase_22 PF02994.9 gi|110666991|ref|YP_656802.1| - 0.35 9.3 4.3 0.41 9.0 3.0 1.0 1 0 0 1 1 1 0 L1 transposable element DUF16 PF01519.11 gi|110666991|ref|YP_656802.1| - 0.36 11.0 2.9 0.56 10.4 2.0 1.4 1 1 0 1 1 1 0 Protein of unknown function DUF16 Mucin PF01456.12 gi|110666991|ref|YP_656802.1| - 0.36 10.5 5.7 0.44 10.3 3.9 1.1 1 0 0 1 1 1 0 Mucin-like glycoprotein Adaptin_binding PF10199.4 gi|110666991|ref|YP_656802.1| - 0.58 10.4 5.6 0.75 10.0 3.9 1.1 1 0 0 1 1 1 0 Alpha and gamma adaptin binding protein p34 zf-dskA_traR PF01258.12 gi|110666991|ref|YP_656802.1| - 0.63 9.8 2.6 13 5.6 0.1 2.3 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DUF35_N PF12172.3 gi|110666991|ref|YP_656802.1| - 0.86 9.5 4.7 3.2 7.7 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Pox_RNA_Pol_19 PF05320.7 gi|110666991|ref|YP_656802.1| - 1.3 8.7 5.5 1.7 8.3 3.8 1.1 1 0 0 1 1 1 0 Poxvirus DNA-directed RNA polymerase 19 kDa subunit NESP55 PF06390.7 gi|110666991|ref|YP_656802.1| - 2.1 7.6 11.1 2.5 7.4 7.7 1.1 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) Fer4_15 PF13459.1 gi|110666992|ref|YP_656803.1| - 9.8e-15 54.8 2.0 1.2e-14 54.6 1.4 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|110666992|ref|YP_656803.1| - 0.00039 20.7 1.8 0.001 19.4 1.2 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.22 gi|110666992|ref|YP_656803.1| - 0.025 14.1 1.1 0.38 10.4 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_19 PF06902.6 gi|110666992|ref|YP_656803.1| - 0.075 12.8 0.2 0.4 10.5 0.2 2.1 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_10 PF13237.1 gi|110666992|ref|YP_656803.1| - 0.11 12.2 0.0 0.6 9.9 0.0 1.9 2 0 0 2 2 2 0 4Fe-4S dicluster domain Bac_rhodopsin PF01036.13 gi|110666993|ref|YP_656804.1| - 3e-62 209.8 19.7 3.3e-62 209.6 13.7 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein BCD PF15461.1 gi|110666995|ref|YP_656806.1| - 2.1e-78 263.3 23.1 3e-78 262.8 16.0 1.2 1 0 0 1 1 1 1 Beta-carotene 15,15'-dioxygenase KASH PF10541.4 gi|110666995|ref|YP_656806.1| - 0.14 11.9 1.9 3.9 7.3 0.1 2.8 3 0 0 3 3 3 0 Nuclear envelope localisation domain BofA PF07441.6 gi|110666995|ref|YP_656806.1| - 4.6 7.2 11.7 0.051 13.5 1.8 2.5 3 0 0 3 3 3 0 SigmaK-factor processing regulatory protein BofA ERCC4 PF02732.10 gi|110666996|ref|YP_656807.1| - 2.8e-23 82.2 0.2 1.3e-22 80.1 0.0 2.2 2 0 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.26 gi|110666996|ref|YP_656807.1| - 2.5e-18 65.6 0.0 9.2e-18 63.8 0.0 2.0 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|110666996|ref|YP_656807.1| - 3.8e-17 62.3 0.1 1.5e-16 60.3 0.0 2.1 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|110666996|ref|YP_656807.1| - 1.7e-11 44.2 0.4 6.2e-11 42.4 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|110666996|ref|YP_656807.1| - 1.1e-10 41.4 0.1 4.5e-10 39.5 0.1 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|110666996|ref|YP_656807.1| - 1e-09 38.1 0.4 6.6e-09 35.5 0.1 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.18 gi|110666996|ref|YP_656807.1| - 5e-07 29.0 0.1 0.00018 21.0 0.1 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.15 gi|110666996|ref|YP_656807.1| - 0.012 15.8 0.0 0.096 12.9 0.0 2.6 2 1 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold Arc_PepC_II PF06847.6 gi|110666997|ref|YP_656808.1| - 1.5e-19 70.2 0.0 1.6e-18 66.8 0.0 2.3 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|110666997|ref|YP_656808.1| - 1.6e-08 34.6 10.8 1.6e-08 34.6 7.5 1.9 2 0 0 2 2 2 1 Type IV leader peptidase family PRA-CH PF01502.13 gi|110666998|ref|YP_656809.1| - 8.6e-37 124.6 0.5 1.2e-36 124.1 0.3 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Halogen_Hydrol PF10112.4 gi|110666999|ref|YP_656810.1| - 0.18 11.1 0.1 0.18 11.1 0.1 1.6 2 0 0 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein PGM_PMM_I PF02878.11 gi|110667000|ref|YP_656811.1| - 1.6e-35 121.5 0.0 3.2e-35 120.6 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|110667000|ref|YP_656811.1| - 6.1e-26 90.7 0.0 1.4e-25 89.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|110667000|ref|YP_656811.1| - 2.6e-14 52.9 0.1 7.8e-14 51.4 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|110667000|ref|YP_656811.1| - 1.8e-11 44.0 0.0 3.9e-11 42.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III His_biosynth PF00977.16 gi|110667001|ref|YP_656812.1| - 4.3e-75 251.9 4.7 4.8e-75 251.7 3.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|110667001|ref|YP_656812.1| - 3.4e-12 45.8 0.5 3.2e-06 26.1 0.0 2.3 2 1 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|110667001|ref|YP_656812.1| - 1.8e-09 37.2 7.0 8.1e-07 28.4 0.6 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.9 gi|110667001|ref|YP_656812.1| - 2.6e-08 33.2 9.5 9.7e-06 24.8 0.9 2.1 1 1 1 2 2 2 2 Thiazole biosynthesis protein ThiG DHO_dh PF01180.16 gi|110667001|ref|YP_656812.1| - 1.8e-07 30.4 1.4 0.00019 20.5 0.3 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|110667001|ref|YP_656812.1| - 3.6e-07 29.6 2.1 0.011 14.9 0.1 2.3 2 0 0 2 2 2 2 PcrB family IGPS PF00218.16 gi|110667001|ref|YP_656812.1| - 1.6e-05 24.0 0.2 0.013 14.5 0.0 2.5 2 1 1 3 3 3 2 Indole-3-glycerol phosphate synthase TMP-TENI PF02581.12 gi|110667001|ref|YP_656812.1| - 0.00062 18.9 4.2 0.094 11.8 0.5 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI NanE PF04131.9 gi|110667001|ref|YP_656812.1| - 0.013 14.4 1.0 3 6.7 0.1 2.4 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase IMPDH PF00478.20 gi|110667001|ref|YP_656812.1| - 0.04 12.8 3.1 1.2 7.9 0.2 2.2 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.7 gi|110667001|ref|YP_656812.1| - 0.049 12.6 1.0 0.3 10.1 0.1 2.1 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Ribul_P_3_epim PF00834.14 gi|110667001|ref|YP_656812.1| - 0.064 12.3 3.0 1.4 7.9 0.2 2.4 2 1 0 2 2 2 0 Ribulose-phosphate 3 epimerase family FMN_dh PF01070.13 gi|110667001|ref|YP_656812.1| - 0.092 11.5 10.7 0.87 8.3 1.3 2.1 2 0 0 2 2 2 0 FMN-dependent dehydrogenase IGPD PF00475.13 gi|110667002|ref|YP_656813.1| - 8.1e-59 197.6 1.0 1.1e-58 197.2 0.7 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase ACT PF01842.20 gi|110667003|ref|YP_656814.1| - 1.7e-06 27.3 1.9 3.5e-06 26.3 0.2 2.3 2 1 0 2 2 2 1 ACT domain ACT_7 PF13840.1 gi|110667003|ref|YP_656814.1| - 0.00046 19.6 0.1 0.0013 18.2 0.0 1.7 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|110667003|ref|YP_656814.1| - 0.035 14.4 0.4 0.75 10.1 0.0 2.3 2 0 0 2 2 2 0 ACT domain CM_2 PF01817.16 gi|110667003|ref|YP_656814.1| - 0.079 13.0 0.0 0.19 11.8 0.0 1.6 1 1 0 1 1 1 0 Chorismate mutase type II ACT_6 PF13740.1 gi|110667003|ref|YP_656814.1| - 0.12 12.1 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 ACT domain OrfB_IS605 PF01385.14 gi|110667004|ref|YP_656815.1| - 1.5e-05 24.4 0.0 2e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Probable transposase DUF3791 PF12668.2 gi|110667004|ref|YP_656815.1| - 0.027 14.0 0.1 0.04 13.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3791) AAA_14 PF13173.1 gi|110667004|ref|YP_656815.1| - 0.11 12.3 0.0 0.13 12.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain UPF0029 PF01205.14 gi|110667005|ref|YP_656816.1| - 4.6e-33 113.1 0.0 9.8e-33 112.1 0.0 1.5 2 0 0 2 2 2 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.6 gi|110667005|ref|YP_656816.1| - 7.3e-11 41.5 0.3 3.4e-10 39.3 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) EFG_C PF00679.19 gi|110667005|ref|YP_656816.1| - 0.00011 22.0 0.1 0.00038 20.2 0.0 1.9 2 0 0 2 2 2 1 Elongation factor G C-terminus YscJ_FliF PF01514.12 gi|110667005|ref|YP_656816.1| - 0.07 12.2 0.0 0.81 8.7 0.0 2.0 2 0 0 2 2 2 0 Secretory protein of YscJ/FliF family UPRTase PF14681.1 gi|110667006|ref|YP_656817.1| - 1.1e-53 181.5 0.0 1.3e-53 181.2 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|110667006|ref|YP_656817.1| - 7.2e-07 28.9 0.1 1.2e-06 28.2 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain CbtB PF09489.5 gi|110667007|ref|YP_656818.1| - 0.2 11.5 1.5 0.23 11.3 0.4 1.7 1 1 1 2 2 2 0 Probable cobalt transporter subunit (CbtB) Oxidored_q2 PF00420.19 gi|110667007|ref|YP_656818.1| - 0.87 9.2 5.5 0.99 9.0 3.8 1.0 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF4342 PF14242.1 gi|110667008|ref|YP_656819.1| - 0.8 9.5 3.8 2.9 7.7 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4342) TcpE PF12648.2 gi|110667008|ref|YP_656819.1| - 1.1 9.3 4.2 2.9 8.0 0.3 2.1 2 0 0 2 2 2 0 TcpE family zf-RING_3 PF14369.1 gi|110667009|ref|YP_656820.1| - 8.6e-06 25.6 4.3 8.6e-06 25.6 3.0 1.5 1 1 0 1 1 1 1 zinc-finger NOB1_Zn_bind PF08772.6 gi|110667009|ref|YP_656820.1| - 0.0018 18.0 0.3 0.0024 17.6 0.2 1.3 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.14 gi|110667009|ref|YP_656820.1| - 0.0081 15.8 0.5 0.011 15.3 0.4 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|110667009|ref|YP_656820.1| - 0.024 14.4 2.2 0.032 14.0 1.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-C3HC4_3 PF13920.1 gi|110667009|ref|YP_656820.1| - 0.052 13.2 0.6 0.081 12.6 0.4 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Zn_Tnp_IS1595 PF12760.2 gi|110667009|ref|YP_656820.1| - 0.055 13.2 0.7 8.2 6.3 0.0 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|110667009|ref|YP_656820.1| - 0.056 13.3 2.6 0.1 12.5 1.8 1.5 1 1 0 1 1 1 0 Zinc ribbon domain zf-CHY PF05495.7 gi|110667009|ref|YP_656820.1| - 0.06 13.5 1.6 0.063 13.4 1.1 1.2 1 0 0 1 1 1 0 CHY zinc finger PhnA_Zn_Ribbon PF08274.7 gi|110667009|ref|YP_656820.1| - 0.13 12.1 0.6 0.13 12.1 0.4 2.0 2 0 0 2 2 2 0 PhnA Zinc-Ribbon RNHCP PF12647.2 gi|110667009|ref|YP_656820.1| - 0.15 11.8 3.5 0.18 11.6 2.4 1.2 1 0 0 1 1 1 0 RNHCP domain DUF2197 PF09963.4 gi|110667009|ref|YP_656820.1| - 0.17 11.8 1.5 0.38 10.7 0.1 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) zinc-ribbons_6 PF07191.7 gi|110667009|ref|YP_656820.1| - 0.19 11.5 5.2 3.1 7.6 0.1 2.1 1 1 1 2 2 2 0 zinc-ribbons TFIIS_C PF01096.13 gi|110667009|ref|YP_656820.1| - 0.21 11.2 1.8 7.8 6.2 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.7 gi|110667009|ref|YP_656820.1| - 0.6 9.4 6.1 6.1 6.2 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-C4_Topoisom PF01396.14 gi|110667009|ref|YP_656820.1| - 2 7.9 5.4 0.35 10.4 1.0 1.8 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger cobW PF02492.14 gi|110667010|ref|YP_656821.1| - 7.7e-51 172.0 1.1 1e-50 171.6 0.7 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.9 gi|110667010|ref|YP_656821.1| - 1.2e-23 82.5 0.0 2.7e-23 81.4 0.0 1.6 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain GTP_EFTU PF00009.22 gi|110667010|ref|YP_656821.1| - 8.5e-05 22.0 0.8 0.24 10.7 0.1 2.6 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain TrwB_AAD_bind PF10412.4 gi|110667010|ref|YP_656821.1| - 0.0017 17.0 0.0 0.004 15.8 0.0 1.5 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.1 gi|110667010|ref|YP_656821.1| - 0.002 18.1 0.5 0.005 16.8 0.3 1.9 1 1 0 1 1 1 1 AAA ATPase domain ArgK PF03308.11 gi|110667010|ref|YP_656821.1| - 0.002 16.9 1.4 1.4 7.6 0.1 2.8 2 1 0 2 2 2 2 ArgK protein T2SE PF00437.15 gi|110667010|ref|YP_656821.1| - 0.0033 16.3 1.4 0.0039 16.1 0.2 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein DUF258 PF03193.11 gi|110667010|ref|YP_656821.1| - 0.0037 16.4 0.0 0.0082 15.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|110667010|ref|YP_656821.1| - 0.0045 16.1 0.0 0.011 14.7 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin MMR_HSR1 PF01926.18 gi|110667010|ref|YP_656821.1| - 0.006 16.5 0.6 0.07 13.0 0.4 2.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_19 PF13245.1 gi|110667010|ref|YP_656821.1| - 0.0089 15.7 0.1 0.024 14.3 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_29 PF13555.1 gi|110667010|ref|YP_656821.1| - 0.0094 15.4 0.5 0.059 12.9 0.2 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|110667010|ref|YP_656821.1| - 0.014 15.5 0.0 0.033 14.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|110667010|ref|YP_656821.1| - 0.019 14.6 0.0 0.049 13.2 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_18 PF13238.1 gi|110667010|ref|YP_656821.1| - 0.024 14.9 1.0 0.12 12.6 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|110667010|ref|YP_656821.1| - 0.024 14.4 0.0 0.078 12.8 0.0 2.0 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|110667010|ref|YP_656821.1| - 0.03 14.2 0.0 0.083 12.7 0.0 1.8 2 0 0 2 2 1 0 AAA domain MobB PF03205.9 gi|110667010|ref|YP_656821.1| - 0.037 13.7 0.1 0.13 11.9 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|110667010|ref|YP_656821.1| - 0.038 13.6 0.0 0.064 12.9 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase SRPRB PF09439.5 gi|110667010|ref|YP_656821.1| - 0.04 13.1 0.3 0.11 11.7 0.0 1.8 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Miro PF08477.8 gi|110667010|ref|YP_656821.1| - 0.045 14.2 0.0 0.18 12.2 0.0 2.0 1 0 0 1 1 1 0 Miro-like protein AAA_28 PF13521.1 gi|110667010|ref|YP_656821.1| - 0.047 13.6 0.2 0.17 11.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|110667010|ref|YP_656821.1| - 0.05 13.8 1.7 0.073 13.3 0.0 2.0 2 1 0 2 2 2 0 ABC transporter NACHT PF05729.7 gi|110667010|ref|YP_656821.1| - 0.11 12.1 0.0 0.34 10.5 0.0 1.8 1 0 0 1 1 1 0 NACHT domain NTPase_1 PF03266.10 gi|110667010|ref|YP_656821.1| - 0.11 12.1 1.1 0.27 10.9 0.1 2.0 2 0 0 2 2 2 0 NTPase AAA_23 PF13476.1 gi|110667010|ref|YP_656821.1| - 0.39 10.9 2.7 0.46 10.7 0.2 2.1 2 0 0 2 2 2 0 AAA domain SelP_N PF04592.9 gi|110667010|ref|YP_656821.1| - 0.96 8.7 6.1 1.6 8.0 4.2 1.3 1 0 0 1 1 1 0 Selenoprotein P, N terminal region Arf PF00025.16 gi|110667010|ref|YP_656821.1| - 1.9 7.6 5.6 7 5.8 0.0 2.9 2 1 0 2 2 2 0 ADP-ribosylation factor family RhoGAP PF00620.22 gi|110667011|ref|YP_656822.1| - 0.11 12.1 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 RhoGAP domain ArsA_ATPase PF02374.10 gi|110667012|ref|YP_656823.1| - 6.4e-74 248.7 0.0 7.9e-74 248.4 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|110667012|ref|YP_656823.1| - 1.7e-11 43.8 0.0 4.5e-11 42.5 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|110667012|ref|YP_656823.1| - 2.8e-06 27.3 0.1 1.8e-05 24.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|110667012|ref|YP_656823.1| - 8.5e-05 22.1 0.0 9.8e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain AAA_25 PF13481.1 gi|110667012|ref|YP_656823.1| - 0.015 14.7 1.2 0.066 12.6 0.9 2.2 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|110667012|ref|YP_656823.1| - 0.04 14.2 0.3 0.74 10.1 0.0 2.7 2 1 1 3 3 3 0 AAA domain AAA_17 PF13207.1 gi|110667012|ref|YP_656823.1| - 0.052 14.3 2.1 1.1 10.1 1.4 2.7 1 1 0 1 1 1 0 AAA domain Fer4_NifH PF00142.13 gi|110667012|ref|YP_656823.1| - 0.054 12.6 0.0 0.12 11.5 0.0 1.6 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.1 gi|110667012|ref|YP_656823.1| - 0.07 12.7 0.2 0.71 9.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|110667012|ref|YP_656823.1| - 0.097 11.7 0.0 0.14 11.2 0.0 1.4 1 0 0 1 1 1 0 KaiC SRP54 PF00448.17 gi|110667012|ref|YP_656823.1| - 0.17 11.3 0.5 0.47 9.8 0.1 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain CstA PF02554.9 gi|110667013|ref|YP_656824.1| - 3.3e-127 424.2 23.6 3.3e-127 424.2 16.4 2.0 2 0 0 2 2 2 1 Carbon starvation protein CstA DUF4161 PF13722.1 gi|110667013|ref|YP_656824.1| - 4.6e-31 107.7 1.9 4.6e-31 107.7 1.3 4.0 4 0 0 4 4 4 1 C-terminal domain on CstA (DUF4161) Cupin_2 PF07883.6 gi|110667015|ref|YP_656826.1| - 1.9e-07 30.4 0.1 5.3e-07 29.0 0.0 1.7 2 0 0 2 2 2 1 Cupin domain MannoseP_isomer PF01050.13 gi|110667015|ref|YP_656826.1| - 0.0027 17.3 0.0 0.0032 17.1 0.0 1.0 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_1 PF00190.17 gi|110667015|ref|YP_656826.1| - 0.11 11.8 0.0 0.21 11.0 0.0 1.4 1 1 0 1 1 1 0 Cupin TrmB PF01978.14 gi|110667018|ref|YP_656829.1| - 1.7e-14 53.2 0.0 2.3e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|110667018|ref|YP_656829.1| - 1e-06 28.2 0.2 1.6e-06 27.6 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|110667018|ref|YP_656829.1| - 2.8e-05 23.7 0.0 5.1e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|110667018|ref|YP_656829.1| - 4.2e-05 23.7 0.1 6.7e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|110667018|ref|YP_656829.1| - 0.0014 18.2 0.2 0.0025 17.3 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|110667018|ref|YP_656829.1| - 0.008 15.6 0.0 0.0095 15.4 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit Phage_rep_org_N PF09681.5 gi|110667018|ref|YP_656829.1| - 0.013 15.0 0.0 0.024 14.1 0.0 1.5 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_5 PF01022.15 gi|110667018|ref|YP_656829.1| - 0.015 14.9 0.1 0.024 14.2 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|110667018|ref|YP_656829.1| - 0.032 13.6 0.0 0.049 13.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|110667018|ref|YP_656829.1| - 0.058 13.2 0.5 0.1 12.4 0.3 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.16 gi|110667018|ref|YP_656829.1| - 0.15 11.5 0.4 0.26 10.7 0.3 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family PALP PF00291.20 gi|110667019|ref|YP_656830.1| - 4.1e-62 210.1 0.4 4.8e-62 209.9 0.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme 2-Hacid_dh_C PF02826.14 gi|110667020|ref|YP_656831.1| - 3.8e-57 192.2 0.0 6.9e-57 191.4 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|110667020|ref|YP_656831.1| - 9.7e-34 115.7 0.4 4.7e-33 113.4 0.8 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.20 gi|110667020|ref|YP_656831.1| - 9.7e-05 21.7 0.1 0.00049 19.5 0.1 2.4 1 0 0 1 1 1 1 ACT domain NAD_binding_2 PF03446.10 gi|110667020|ref|YP_656831.1| - 0.00022 21.0 0.6 0.0061 16.4 0.0 2.8 3 0 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase ELFV_dehydrog PF00208.16 gi|110667020|ref|YP_656831.1| - 0.0018 17.9 0.0 0.0045 16.6 0.0 1.6 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TrkA_N PF02254.13 gi|110667020|ref|YP_656831.1| - 0.0095 15.9 0.0 0.029 14.3 0.0 1.9 1 0 0 1 1 1 1 TrkA-N domain UDPG_MGDP_dh_C PF03720.10 gi|110667020|ref|YP_656831.1| - 0.012 15.7 0.0 0.035 14.2 0.0 1.8 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HAD PF12710.2 gi|110667021|ref|YP_656832.1| - 1.9e-17 64.0 0.3 2.3e-17 63.7 0.2 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|110667021|ref|YP_656832.1| - 7.2e-13 49.4 0.2 3.8e-08 33.9 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|110667021|ref|YP_656832.1| - 1.2e-12 47.9 0.4 3.3e-08 33.4 0.0 3.0 2 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|110667021|ref|YP_656832.1| - 1.9e-06 28.2 0.2 3.7e-05 23.9 0.0 2.3 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|110667021|ref|YP_656832.1| - 0.063 12.4 0.0 1.7 7.7 0.0 2.1 2 0 0 2 2 2 0 Putative Phosphatase DUF91 PF01939.11 gi|110667022|ref|YP_656833.1| - 1.9e-07 30.5 0.0 2.7e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF91 Auto_anti-p27 PF06677.7 gi|110667022|ref|YP_656833.1| - 2.5e-06 27.1 7.5 0.00047 19.8 0.2 3.5 3 0 0 3 3 3 2 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C4_Topoisom PF01396.14 gi|110667022|ref|YP_656833.1| - 2.6e-06 26.8 5.2 4.8e-06 25.9 0.0 2.5 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger GFA PF04828.9 gi|110667022|ref|YP_656833.1| - 0.033 14.1 4.8 0.97 9.4 0.1 2.9 3 1 1 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme zf-ribbon_3 PF13248.1 gi|110667022|ref|YP_656833.1| - 0.071 12.3 4.9 0.51 9.6 0.1 2.8 3 0 0 3 3 3 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|110667022|ref|YP_656833.1| - 0.13 12.1 5.8 0.93 9.4 4.0 2.2 1 1 0 1 1 1 0 Rubredoxin zf-Mss51 PF13824.1 gi|110667022|ref|YP_656833.1| - 0.45 10.4 4.9 2.6 7.9 0.0 3.3 4 0 0 4 4 4 0 Zinc-finger of mitochondrial splicing suppressor 51 A2L_zn_ribbon PF08792.5 gi|110667022|ref|YP_656833.1| - 0.74 9.3 6.3 4.7 6.7 0.0 3.2 3 0 0 3 3 3 0 A2L zinc ribbon domain zf-IS66 PF13005.2 gi|110667022|ref|YP_656833.1| - 0.93 9.5 7.0 1.4 8.9 0.1 3.3 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 Zn_ribbon_recom PF13408.1 gi|110667022|ref|YP_656833.1| - 2.9 8.2 5.4 0.62 10.3 0.4 2.2 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Sec63 PF02889.11 gi|110667023|ref|YP_656834.1| - 1.7e-29 103.1 0.0 2.3e-29 102.6 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain DEAD PF00270.24 gi|110667023|ref|YP_656834.1| - 1.1e-26 93.3 0.0 5.4e-26 91.0 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|110667023|ref|YP_656834.1| - 1.6e-09 37.4 0.0 6.7e-09 35.4 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|110667023|ref|YP_656834.1| - 1.2e-07 31.7 0.0 2.1e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|110667023|ref|YP_656834.1| - 1.1e-05 25.5 0.3 4.6e-05 23.5 0.2 2.2 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|110667023|ref|YP_656834.1| - 0.0079 15.7 0.0 0.024 14.1 0.0 1.9 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda INCENP_N PF12178.3 gi|110667023|ref|YP_656834.1| - 0.02 14.4 0.1 0.2 11.2 0.0 2.4 2 0 0 2 2 2 0 Chromosome passenger complex (CPC) protein INCENP N terminal tRNA_int_endo PF01974.12 gi|110667024|ref|YP_656835.1| - 4.8e-31 106.3 0.0 3.9e-22 77.8 0.0 2.9 2 1 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|110667024|ref|YP_656835.1| - 7.1e-28 95.9 0.0 8.5e-13 47.6 0.0 2.5 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain Peptidase_S32 PF05579.8 gi|110667024|ref|YP_656835.1| - 0.0014 17.6 0.0 0.0021 17.0 0.0 1.3 1 0 0 1 1 1 1 Equine arteritis virus serine endopeptidase S32 tRNA-synt_1b PF00579.20 gi|110667025|ref|YP_656836.1| - 1.1e-41 142.9 0.0 1.8e-24 86.3 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) tRNA-synt_2d PF01409.15 gi|110667026|ref|YP_656837.1| - 6.1e-80 267.9 0.0 7.8e-80 267.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) HTH_27 PF13463.1 gi|110667026|ref|YP_656837.1| - 1.2e-05 25.5 2.5 0.005 17.1 0.2 2.7 2 0 0 2 2 2 2 Winged helix DNA-binding domain tRNA-synt_2 PF00152.15 gi|110667026|ref|YP_656837.1| - 2.9e-05 23.0 0.7 0.012 14.4 0.1 2.6 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) HTH_45 PF14947.1 gi|110667026|ref|YP_656837.1| - 0.0031 17.2 0.1 0.047 13.5 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix Rrf2 PF02082.15 gi|110667026|ref|YP_656837.1| - 0.015 15.3 0.0 0.041 14.0 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator MarR PF01047.17 gi|110667026|ref|YP_656837.1| - 0.019 14.6 0.0 0.059 13.0 0.0 1.9 1 0 0 1 1 1 0 MarR family DUF4364 PF14277.1 gi|110667026|ref|YP_656837.1| - 0.032 13.8 0.4 0.36 10.4 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) B5 PF03484.10 gi|110667027|ref|YP_656838.1| - 1.5e-14 53.5 0.1 6e-13 48.4 0.0 2.7 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|110667027|ref|YP_656838.1| - 8.9e-11 41.5 0.0 1.2e-09 37.8 0.0 2.1 1 1 0 1 1 1 1 B3/4 domain Uricase PF01014.13 gi|110667027|ref|YP_656838.1| - 0.053 13.6 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Uricase tRNA-synt_2d PF01409.15 gi|110667027|ref|YP_656838.1| - 0.077 12.1 0.0 0.13 11.4 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class II core domain (F) tRNA-synt_1 PF00133.17 gi|110667028|ref|YP_656839.1| - 6.9e-122 407.4 0.1 6.5e-121 404.2 0.1 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|110667028|ref|YP_656839.1| - 1.6e-28 99.3 0.0 3.9e-28 98.1 0.0 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|110667028|ref|YP_656839.1| - 9.9e-26 90.2 1.4 3.3e-13 49.0 0.1 3.5 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|110667028|ref|YP_656839.1| - 3.7e-05 23.1 0.0 0.00012 21.4 0.0 1.8 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|110667028|ref|YP_656839.1| - 4.1e-05 22.8 0.0 0.021 13.9 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|110667028|ref|YP_656839.1| - 0.00023 19.9 0.1 0.0023 16.6 0.0 2.3 2 1 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|110667028|ref|YP_656839.1| - 0.047 12.4 0.0 7.6 5.2 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (R) DUF773 PF05600.7 gi|110667028|ref|YP_656839.1| - 0.049 12.4 3.3 0.12 11.1 2.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF773) DNA_ligase_ZBD PF03119.11 gi|110667028|ref|YP_656839.1| - 0.14 11.9 1.8 6.3 6.5 0.0 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DHO_dh PF01180.16 gi|110667029|ref|YP_656840.1| - 8.2e-82 274.4 0.0 9.5e-82 274.2 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.10 gi|110667029|ref|YP_656840.1| - 2.2e-07 30.3 1.1 2.9e-06 26.6 0.8 2.1 1 1 0 1 1 1 1 Nitronate monooxygenase Pantoate_transf PF02548.10 gi|110667029|ref|YP_656840.1| - 0.16 11.0 0.4 0.66 9.0 0.1 1.9 2 0 0 2 2 2 0 Ketopantoate hydroxymethyltransferase SymE_toxin PF08845.5 gi|110667030|ref|YP_656841.1| - 0.0016 18.2 0.0 0.0017 18.1 0.0 1.1 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system Antitoxin-MazE PF04014.13 gi|110667030|ref|YP_656841.1| - 0.024 14.3 0.1 0.037 13.7 0.1 1.4 1 0 0 1 1 1 0 Antidote-toxin recognition MazE MC1 PF05854.6 gi|110667031|ref|YP_656842.1| - 1e-30 105.5 0.2 1.2e-30 105.2 0.1 1.1 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 SQS_PSY PF00494.14 gi|110667032|ref|YP_656843.1| - 0.011 15.0 0.2 3.1 6.9 0.0 2.0 1 1 1 2 2 2 0 Squalene/phytoene synthase AMMECR1 PF01871.12 gi|110667033|ref|YP_656844.1| - 7.5e-48 161.8 0.0 8.6e-48 161.6 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 QRPTase_C PF01729.14 gi|110667034|ref|YP_656845.1| - 7.4e-19 67.8 0.0 1.1e-18 67.3 0.0 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|110667034|ref|YP_656845.1| - 0.0015 18.2 0.0 0.0039 16.9 0.0 1.7 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Peptidase_MA_2 PF13485.1 gi|110667035|ref|YP_656846.1| - 3.7e-05 23.7 0.4 0.00015 21.8 0.0 2.3 2 1 1 3 3 3 1 Peptidase MA superfamily Peptidase_M76 PF09768.4 gi|110667035|ref|YP_656846.1| - 0.0083 15.6 0.0 0.014 14.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase M76 family Peptidase_M91 PF14891.1 gi|110667035|ref|YP_656846.1| - 0.037 14.1 0.3 0.16 12.0 0.2 1.9 1 1 0 1 1 1 0 Effector protein Zn_peptidase_2 PF04298.7 gi|110667035|ref|YP_656846.1| - 0.12 11.7 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 Putative neutral zinc metallopeptidase LPAM_1 PF08139.7 gi|110667035|ref|YP_656846.1| - 0.29 11.4 0.9 0.48 10.7 0.6 1.3 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Myco_19_kDa PF05481.7 gi|110667035|ref|YP_656846.1| - 0.38 10.5 4.4 0.44 10.3 0.3 2.2 2 0 0 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen Isochorismatase PF00857.15 gi|110667036|ref|YP_656847.1| - 1e-50 172.1 0.1 1.1e-50 171.9 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Amidohydro_4 PF13147.1 gi|110667037|ref|YP_656848.1| - 7.3e-30 104.9 7.7 4.9e-29 102.2 5.3 1.9 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|110667037|ref|YP_656848.1| - 2.9e-20 73.1 0.7 7.8e-20 71.7 0.5 1.8 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|110667037|ref|YP_656848.1| - 9.1e-14 51.0 0.4 3.1e-13 49.3 0.3 2.0 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|110667037|ref|YP_656848.1| - 1.7e-07 30.7 5.5 1.5e-06 27.7 1.5 2.2 2 0 0 2 2 2 1 Amidohydrolase family TatD_DNase PF01026.16 gi|110667037|ref|YP_656848.1| - 0.00089 18.5 0.1 0.0058 15.8 0.0 2.3 1 1 0 1 1 1 1 TatD related DNase DHOase PF12890.2 gi|110667037|ref|YP_656848.1| - 0.008 15.8 0.0 0.021 14.4 0.0 1.8 2 0 0 2 2 2 1 Dihydro-orotase-like AP_endonuc_2 PF01261.19 gi|110667037|ref|YP_656848.1| - 0.017 14.4 0.1 0.027 13.7 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Usp PF00582.21 gi|110667037|ref|YP_656848.1| - 0.025 14.7 0.1 0.072 13.2 0.0 1.8 1 0 0 1 1 1 0 Universal stress protein family DUF605 PF04652.11 gi|110667038|ref|YP_656849.1| - 0.15 11.4 9.1 0.027 13.8 4.2 1.5 2 0 0 2 2 2 0 Vta1 like Mucin PF01456.12 gi|110667038|ref|YP_656849.1| - 1.8 8.3 12.8 0.23 11.2 5.5 1.9 2 0 0 2 2 2 0 Mucin-like glycoprotein Lin-8 PF03353.10 gi|110667038|ref|YP_656849.1| - 5.2 6.2 12.2 0.3 10.3 5.1 1.5 2 0 0 2 2 2 0 Ras-mediated vulval-induction antagonist Usp PF00582.21 gi|110667039|ref|YP_656850.1| - 1.7e-16 60.6 0.5 3.6e-16 59.6 0.4 1.5 1 1 0 1 1 1 1 Universal stress protein family Alk_phosphatase PF00245.15 gi|110667039|ref|YP_656850.1| - 0.012 14.3 0.2 0.014 14.1 0.1 1.0 1 0 0 1 1 1 0 Alkaline phosphatase BTV_NS2 PF04514.7 gi|110667039|ref|YP_656850.1| - 0.05 12.4 0.0 0.053 12.4 0.0 1.0 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 Zeta_toxin PF06414.7 gi|110667039|ref|YP_656850.1| - 0.098 11.7 0.0 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 Zeta toxin Acetyltransf_1 PF00583.19 gi|110667040|ref|YP_656851.1| - 2.4e-12 46.7 0.0 3.6e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|110667040|ref|YP_656851.1| - 4.5e-06 26.8 0.0 5.3e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|110667040|ref|YP_656851.1| - 8.2e-06 25.4 0.0 1.2e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|110667040|ref|YP_656851.1| - 1.1e-05 25.5 0.0 1.4e-05 25.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|110667040|ref|YP_656851.1| - 0.00022 21.3 0.0 0.00033 20.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|110667040|ref|YP_656851.1| - 0.0084 16.0 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Usp PF00582.21 gi|110667041|ref|YP_656852.1| - 4.6e-16 59.2 1.9 6.2e-16 58.8 1.3 1.1 1 0 0 1 1 1 1 Universal stress protein family Usp PF00582.21 gi|110667042|ref|YP_656853.1| - 4e-32 111.3 0.1 4.6e-32 111.1 0.1 1.1 1 0 0 1 1 1 1 Universal stress protein family Glyco_hydro_3_C PF01915.17 gi|110667042|ref|YP_656853.1| - 0.013 15.0 0.1 0.016 14.7 0.1 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 3 C-terminal domain DHHA1 PF02272.14 gi|110667043|ref|YP_656854.1| - 0.0019 17.8 0.1 0.0046 16.6 0.0 1.6 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|110667043|ref|YP_656854.1| - 0.0052 16.4 0.2 0.025 14.2 0.1 2.0 1 1 0 1 1 1 1 DHH family HSP20 PF00011.16 gi|110667045|ref|YP_656856.1| - 3.7e-14 52.4 0.0 4.7e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family Ribosomal_S6e PF01092.14 gi|110667046|ref|YP_656857.1| - 9.9e-36 122.1 0.4 1.2e-35 121.8 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S6e Response_reg PF00072.19 gi|110667049|ref|YP_656860.1| - 8.5e-21 74.0 0.0 3.5e-20 72.0 0.0 2.0 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.21 gi|110667049|ref|YP_656860.1| - 1.3e-17 63.4 0.1 4.1e-17 61.9 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|110667049|ref|YP_656860.1| - 3.2e-16 59.5 0.1 2.9e-11 43.6 0.0 3.1 2 1 1 3 3 3 2 PAS domain PAS_3 PF08447.6 gi|110667049|ref|YP_656860.1| - 8.4e-14 51.4 0.0 2.3e-06 27.5 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|110667049|ref|YP_656860.1| - 3.3e-12 46.4 0.1 1e-07 31.9 0.0 3.2 2 0 0 2 2 2 2 PAS fold HisKA PF00512.20 gi|110667049|ref|YP_656860.1| - 1.5e-10 40.9 0.2 1.5e-10 40.9 0.2 3.9 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|110667049|ref|YP_656860.1| - 8.6e-09 35.1 0.1 0.00043 20.0 0.0 3.1 2 0 0 2 2 2 2 PAS fold GAF_2 PF13185.1 gi|110667049|ref|YP_656860.1| - 9.7e-09 35.8 0.9 2.3e-08 34.6 0.6 1.7 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|110667049|ref|YP_656860.1| - 1.1e-07 31.9 0.1 2.3e-07 30.9 0.1 1.6 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.1 gi|110667049|ref|YP_656860.1| - 1e-05 25.1 0.0 6.8e-05 22.5 0.0 2.4 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|110667049|ref|YP_656860.1| - 0.0062 16.3 0.0 0.045 13.5 0.0 2.4 2 1 0 2 2 2 1 Histidine kinase-like ATPase domain DUF3564 PF12087.3 gi|110667049|ref|YP_656860.1| - 0.037 13.5 0.1 0.13 11.8 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3564) Peptidase_M29 PF02073.10 gi|110667050|ref|YP_656861.1| - 4.3e-110 368.1 1.0 4.9e-110 368.0 0.7 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) X PF00739.14 gi|110667050|ref|YP_656861.1| - 0.11 12.4 0.0 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 Trans-activation protein X NAD_binding_2 PF03446.10 gi|110667051|ref|YP_656862.1| - 3.1e-33 114.9 0.1 4.4e-33 114.4 0.1 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.14 gi|110667051|ref|YP_656862.1| - 1.9e-22 79.8 0.0 2.5e-22 79.4 0.0 1.2 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain NAD_binding_11 PF14833.1 gi|110667051|ref|YP_656862.1| - 2e-05 24.6 0.2 0.032 14.2 0.0 3.1 2 1 1 3 3 3 2 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.12 gi|110667051|ref|YP_656862.1| - 0.00015 22.1 0.0 0.00027 21.3 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|110667051|ref|YP_656862.1| - 0.00018 21.4 0.1 0.00042 20.2 0.0 1.7 2 0 0 2 2 2 1 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|110667051|ref|YP_656862.1| - 0.00021 20.4 0.0 0.00032 19.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|110667051|ref|YP_656862.1| - 0.0012 18.5 0.2 0.0019 17.9 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|110667051|ref|YP_656862.1| - 0.049 13.0 0.0 0.07 12.5 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DapB_N PF01113.15 gi|110667051|ref|YP_656862.1| - 0.098 12.5 1.1 0.3 11.0 0.8 1.8 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Fer2 PF00111.22 gi|110667052|ref|YP_656863.1| - 3e-12 46.0 0.5 5.3e-12 45.3 0.4 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain RHH_1 PF01402.16 gi|110667053|ref|YP_656864.1| - 0.0023 17.7 0.0 0.0071 16.1 0.0 1.9 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF3960 PF13142.1 gi|110667053|ref|YP_656864.1| - 0.059 13.1 0.0 0.091 12.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3960) Plasmid_stabil PF05016.9 gi|110667054|ref|YP_656865.1| - 0.0037 17.6 0.0 0.0042 17.4 0.0 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Fic PF02661.13 gi|110667055|ref|YP_656866.1| - 2.8e-06 27.9 0.6 5.4e-06 27.0 0.2 1.6 2 0 0 2 2 2 1 Fic/DOC family Ion_trans PF00520.26 gi|110667056|ref|YP_656867.1| - 1.5e-19 70.0 6.7 2.4e-19 69.4 4.7 1.3 1 0 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.11 gi|110667056|ref|YP_656867.1| - 1.2e-12 47.3 1.3 1.2e-12 47.3 0.9 2.0 3 0 0 3 3 3 1 Ion channel zf-ribbon_3 PF13248.1 gi|110667056|ref|YP_656867.1| - 0.011 14.9 0.1 0.017 14.3 0.0 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|110667056|ref|YP_656867.1| - 0.042 13.3 0.5 0.064 12.7 0.3 1.2 1 0 0 1 1 1 0 zinc-ribbon domain Glug PF07581.7 gi|110667057|ref|YP_656868.1| - 2.3e-104 334.9 992.9 0.0021 18.1 2.2 115.6 114 1 1 115 115 115 73 The GLUG motif HHH_5 PF14520.1 gi|110667057|ref|YP_656868.1| - 2.7e-09 37.0 0.9 0.085 13.0 0.2 3.8 3 0 0 3 3 3 3 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|110667057|ref|YP_656868.1| - 4.6e-07 29.8 0.1 0.74 9.7 0.0 3.5 3 0 0 3 3 3 3 Domain of unknown function (DUF4332) Cdd1 PF11731.3 gi|110667057|ref|YP_656868.1| - 0.035 14.0 0.0 2.9 7.8 0.0 2.7 3 0 0 3 3 3 0 Pathogenicity locus Sec63 PF02889.11 gi|110667057|ref|YP_656868.1| - 2.5 7.2 0.0 5.8 6.0 0.0 1.6 1 0 0 1 1 1 0 Sec63 Brl domain DUF3516 PF12029.3 gi|110667057|ref|YP_656868.1| - 3.2 6.4 0.0 5.5 5.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3516) DUF1319 PF07028.6 gi|110667057|ref|YP_656868.1| - 8.6 6.5 0.1 16 5.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1319) BAF PF02961.9 gi|110667057|ref|YP_656868.1| - 8.7 6.7 0.0 3.4e+02 1.6 0.0 2.8 2 0 0 2 2 2 0 Barrier to autointegration factor Mur_ligase_M PF08245.7 gi|110667058|ref|YP_656869.1| - 0.00048 20.2 0.0 0.001 19.1 0.0 1.5 1 1 0 1 1 1 1 Mur ligase middle domain Caps_synth_CapC PF14102.1 gi|110667059|ref|YP_656870.1| - 3.9e-09 36.6 35.6 5.3e-08 33.0 5.6 3.2 4 0 0 4 4 4 2 Capsule biosynthesis CapC HTH_10 PF04967.7 gi|110667060|ref|YP_656871.1| - 4.1e-10 39.0 0.0 9.8e-10 37.8 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain PAS_8 PF13188.1 gi|110667060|ref|YP_656871.1| - 1.1e-06 28.3 0.0 0.0018 18.0 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|110667060|ref|YP_656871.1| - 1.6e-05 24.6 0.0 0.055 13.2 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|110667060|ref|YP_656871.1| - 0.0038 17.2 0.0 0.083 12.9 0.0 2.6 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|110667060|ref|YP_656871.1| - 0.012 15.9 0.0 1.2 9.5 0.0 2.7 2 0 0 2 2 2 0 PAS domain Pyr_redox_2 PF07992.9 gi|110667061|ref|YP_656872.1| - 1.2e-20 74.2 0.0 1.9e-20 73.6 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|110667061|ref|YP_656872.1| - 3.8e-10 40.0 0.6 4.9e-08 33.2 0.0 3.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|110667061|ref|YP_656872.1| - 7.8e-09 35.5 0.0 4.5e-08 33.0 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.1 gi|110667061|ref|YP_656872.1| - 5.7e-08 33.0 0.2 5.9e-07 29.7 0.1 2.5 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|110667061|ref|YP_656872.1| - 7.8e-06 25.8 0.0 0.0013 18.6 0.0 2.6 2 0 0 2 2 2 1 TrkA-N domain GIDA PF01134.17 gi|110667061|ref|YP_656872.1| - 0.00019 20.4 3.3 0.22 10.3 0.0 3.0 2 1 0 2 2 2 2 Glucose inhibited division protein A Semialdhyde_dh PF01118.19 gi|110667061|ref|YP_656872.1| - 0.00023 21.4 0.2 0.29 11.4 0.0 3.0 3 0 0 3 3 3 2 Semialdehyde dehydrogenase, NAD binding domain ThiF PF00899.16 gi|110667061|ref|YP_656872.1| - 0.0025 17.6 0.1 0.73 9.6 0.0 2.5 2 0 0 2 2 2 2 ThiF family Saccharop_dh PF03435.13 gi|110667061|ref|YP_656872.1| - 0.0055 15.7 0.1 0.5 9.2 0.0 2.2 2 0 0 2 2 2 1 Saccharopine dehydrogenase Thi4 PF01946.12 gi|110667061|ref|YP_656872.1| - 0.06 12.4 1.1 0.63 9.0 0.0 2.6 3 0 0 3 3 3 0 Thi4 family DUF457 PF04307.9 gi|110667062|ref|YP_656873.1| - 2.5e-07 30.1 8.8 4.5e-07 29.3 6.1 1.4 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF4131 PF13567.1 gi|110667063|ref|YP_656874.1| - 0.01 15.2 0.4 0.27 10.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) MarR_2 PF12802.2 gi|110667064|ref|YP_656875.1| - 4.6e-08 32.6 0.0 8.9e-08 31.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|110667064|ref|YP_656875.1| - 1.1e-07 31.2 0.0 2.9e-07 29.9 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|110667064|ref|YP_656875.1| - 3.1e-07 29.9 0.0 5.2e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|110667064|ref|YP_656875.1| - 3.2e-06 26.7 0.0 6.3e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|110667064|ref|YP_656875.1| - 1e-05 25.2 0.0 2e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|110667064|ref|YP_656875.1| - 2.3e-05 23.6 0.0 0.00011 21.4 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|110667064|ref|YP_656875.1| - 0.0001 21.8 0.0 0.00017 21.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.12 gi|110667064|ref|YP_656875.1| - 0.0039 16.6 0.0 0.006 16.0 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_36 PF13730.1 gi|110667064|ref|YP_656875.1| - 0.0063 16.6 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|110667064|ref|YP_656875.1| - 0.007 16.6 0.0 0.021 15.1 0.0 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|110667064|ref|YP_656875.1| - 0.025 14.2 0.0 0.048 13.3 0.0 1.4 1 0 0 1 1 1 0 HTH domain GntR PF00392.16 gi|110667064|ref|YP_656875.1| - 0.029 13.7 0.0 0.054 12.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family FeoC PF09012.5 gi|110667064|ref|YP_656875.1| - 0.05 13.3 0.0 0.14 11.8 0.0 1.7 2 0 0 2 2 2 0 FeoC like transcriptional regulator HTH_23 PF13384.1 gi|110667064|ref|YP_656875.1| - 0.057 13.0 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|110667064|ref|YP_656875.1| - 0.062 13.1 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_DeoR PF08220.7 gi|110667064|ref|YP_656875.1| - 0.083 12.4 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF2576 PF10845.3 gi|110667064|ref|YP_656875.1| - 0.091 11.9 1.5 0.16 11.1 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2576) HTH_38 PF13936.1 gi|110667064|ref|YP_656875.1| - 0.16 11.5 0.0 0.31 10.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain NAD_synthase PF02540.12 gi|110667066|ref|YP_656877.1| - 8.9e-82 273.6 0.0 1.1e-81 273.3 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|110667066|ref|YP_656877.1| - 1.7e-06 26.8 0.0 0.00097 17.7 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|110667066|ref|YP_656877.1| - 1.3e-05 24.8 0.0 1.5e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|110667066|ref|YP_656877.1| - 0.00023 20.5 0.0 0.00074 18.8 0.0 1.8 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC Aldo_ket_red PF00248.16 gi|110667068|ref|YP_656879.1| - 1.1e-45 155.6 0.0 1.3e-45 155.4 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Chlor_dismutase PF06778.7 gi|110667069|ref|YP_656880.1| - 3.1e-57 193.4 0.0 5.7e-57 192.5 0.0 1.4 1 0 0 1 1 1 1 Chlorite dismutase ABM PF03992.11 gi|110667069|ref|YP_656880.1| - 7.8e-07 29.0 5.2 2.1e-06 27.6 0.0 3.2 3 0 0 3 3 3 1 Antibiotic biosynthesis monooxygenase Peptidase_M50 PF02163.17 gi|110667070|ref|YP_656881.1| - 1.4e-26 92.6 0.0 5.2e-26 90.8 0.0 2.0 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|110667070|ref|YP_656881.1| - 7.7e-18 64.1 0.3 2.9e-08 33.4 0.1 2.4 2 0 0 2 2 2 2 PDZ domain Tricorn_PDZ PF14685.1 gi|110667070|ref|YP_656881.1| - 2.1e-12 46.6 1.2 1.3e-05 24.9 0.1 2.6 2 0 0 2 2 2 2 Tricorn protease PDZ domain PDZ PF00595.19 gi|110667070|ref|YP_656881.1| - 5e-09 36.2 0.3 0.00038 20.5 0.1 2.6 2 0 0 2 2 2 2 PDZ domain (Also known as DHR or GLGF) tRNA-synt_1f PF01921.13 gi|110667072|ref|YP_656883.1| - 9e-99 330.5 0.0 1.3e-98 330.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|110667072|ref|YP_656883.1| - 4.1e-06 25.7 0.0 0.00015 20.5 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|110667072|ref|YP_656883.1| - 0.0056 15.8 0.0 0.019 14.1 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain AA_kinase PF00696.23 gi|110667073|ref|YP_656884.1| - 6.5e-25 88.0 5.0 8.3e-25 87.7 3.5 1.1 1 0 0 1 1 1 1 Amino acid kinase family Phosphonate-bd PF12974.2 gi|110667073|ref|YP_656884.1| - 0.062 12.6 1.5 0.23 10.8 0.0 2.3 2 1 0 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein MoaE PF02391.12 gi|110667074|ref|YP_656885.1| - 9.3e-23 80.2 0.1 1.5e-22 79.6 0.1 1.3 1 0 0 1 1 1 1 MoaE protein Peptidase_M50 PF02163.17 gi|110667076|ref|YP_656887.1| - 5.6e-17 61.3 5.8 2.8e-16 59.0 2.3 2.6 2 1 0 2 2 2 1 Peptidase family M50 AIRS PF00586.19 gi|110667077|ref|YP_656888.1| - 2.3e-17 63.0 2.6 2.3e-17 63.0 1.8 2.1 3 0 0 3 3 3 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|110667077|ref|YP_656888.1| - 1.3e-08 34.9 0.0 2.1e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Septum_form PF13845.1 gi|110667077|ref|YP_656888.1| - 0.071 12.6 0.0 0.16 11.4 0.0 1.5 2 0 0 2 2 2 0 Septum formation UPF0104 PF03706.8 gi|110667078|ref|YP_656889.1| - 1.6e-37 129.4 33.4 2.3e-37 128.8 23.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Per1 PF04080.8 gi|110667078|ref|YP_656889.1| - 0.00058 19.3 3.2 0.0031 17.0 0.3 2.1 2 0 0 2 2 2 2 Per1-like Ribosomal_S19e PF01090.14 gi|110667079|ref|YP_656890.1| - 1.5e-48 163.8 0.0 1.7e-48 163.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e GntR PF00392.16 gi|110667079|ref|YP_656890.1| - 4.1e-05 22.9 0.2 0.0012 18.2 0.1 2.5 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family Mrr_N PF14338.1 gi|110667079|ref|YP_656890.1| - 0.0044 17.0 0.1 0.073 13.1 0.0 2.1 2 0 0 2 2 2 1 Mrr N-terminal domain Ftsk_gamma PF09397.5 gi|110667079|ref|YP_656890.1| - 0.026 14.2 0.1 0.96 9.2 0.0 2.8 3 0 0 3 3 3 0 Ftsk gamma domain Rrf2 PF02082.15 gi|110667079|ref|YP_656890.1| - 0.039 14.0 0.1 0.12 12.4 0.1 1.8 1 1 1 2 2 2 0 Transcriptional regulator Palm_thioest PF02089.10 gi|110667079|ref|YP_656890.1| - 0.051 12.5 0.0 0.064 12.1 0.0 1.1 1 0 0 1 1 1 0 Palmitoyl protein thioesterase dsDNA_bind PF01984.15 gi|110667080|ref|YP_656891.1| - 7.1e-27 93.4 15.3 8.5e-27 93.2 10.6 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain FliG_C PF01706.11 gi|110667080|ref|YP_656891.1| - 0.11 12.4 0.2 0.11 12.4 0.1 2.2 2 1 0 2 2 2 0 FliG C-terminal domain PA26 PF04636.8 gi|110667080|ref|YP_656891.1| - 0.14 10.7 2.0 0.16 10.6 1.4 1.0 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) Caps_synth_GfcC PF06251.6 gi|110667080|ref|YP_656891.1| - 0.52 9.4 7.9 0.66 9.1 5.5 1.1 1 0 0 1 1 1 0 Capsule biosynthesis GfcC DUF2188 PF09954.4 gi|110667080|ref|YP_656891.1| - 0.74 9.7 5.6 0.73 9.7 2.2 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2188) Hid1 PF12722.2 gi|110667080|ref|YP_656891.1| - 1.1 6.8 7.6 1.2 6.7 5.3 1.0 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein Rotamase_2 PF13145.1 gi|110667080|ref|YP_656891.1| - 1.7 9.2 8.4 2.1 8.9 5.8 1.3 1 1 0 1 1 1 0 PPIC-type PPIASE domain APC_CDC26 PF10471.4 gi|110667080|ref|YP_656891.1| - 3.3 8.5 16.1 32 5.3 11.1 2.1 1 1 0 1 1 1 0 Anaphase-promoting complex APC subunit 1 DUF4404 PF14357.1 gi|110667080|ref|YP_656891.1| - 8.5 6.8 10.7 5.1 7.5 5.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) Syntaxin_2 PF14523.1 gi|110667080|ref|YP_656891.1| - 9 6.3 9.4 6.1 6.9 3.6 2.0 1 1 1 2 2 2 0 Syntaxin-like protein Mnd1 PF03962.10 gi|110667080|ref|YP_656891.1| - 9.1 5.8 11.1 7.7 6.1 6.8 1.4 1 1 0 1 1 1 0 Mnd1 family Asn_synthase PF00733.16 gi|110667081|ref|YP_656892.1| - 2.1e-05 24.1 0.5 7.5e-05 22.3 0.1 1.8 1 1 1 2 2 2 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|110667081|ref|YP_656892.1| - 0.0069 14.9 0.1 0.027 13.0 0.1 1.8 1 1 0 1 1 1 1 tRNA methyl transferase ATP_bind_4 PF01902.12 gi|110667081|ref|YP_656892.1| - 0.01 15.2 0.1 0.019 14.3 0.1 1.4 1 1 0 1 1 1 0 ATP-binding region NAD_synthase PF02540.12 gi|110667081|ref|YP_656892.1| - 0.031 13.1 0.0 0.046 12.6 0.0 1.3 1 0 0 1 1 1 0 NAD synthase PAPS_reduct PF01507.14 gi|110667081|ref|YP_656892.1| - 0.04 13.7 0.0 0.24 11.2 0.0 1.9 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family QueC PF06508.8 gi|110667081|ref|YP_656892.1| - 0.1 11.8 0.0 0.2 10.8 0.0 1.4 1 1 0 1 1 1 0 Queuosine biosynthesis protein QueC tRNA-synt_His PF13393.1 gi|110667082|ref|YP_656893.1| - 3e-47 161.1 0.0 3.6e-47 160.9 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|110667082|ref|YP_656893.1| - 1.6e-20 73.3 0.0 2.4e-20 72.8 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|110667082|ref|YP_656893.1| - 1.2e-12 47.5 0.1 2.7e-12 46.4 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2d PF01409.15 gi|110667082|ref|YP_656893.1| - 0.076 12.1 0.0 0.16 11.1 0.0 1.5 1 1 0 1 1 1 0 tRNA synthetases class II core domain (F) PseudoU_synth_1 PF01416.15 gi|110667083|ref|YP_656894.1| - 5.7e-23 81.3 0.0 1.6e-10 41.3 0.0 2.3 2 0 0 2 2 2 2 tRNA pseudouridine synthase zf-ribbon_3 PF13248.1 gi|110667084|ref|YP_656895.1| - 0.00071 18.7 1.3 0.58 9.4 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|110667084|ref|YP_656895.1| - 0.0008 19.0 1.4 0.093 12.4 0.1 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|110667084|ref|YP_656895.1| - 0.00088 19.0 0.2 0.0012 18.6 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon PhnA_Zn_Ribbon PF08274.7 gi|110667084|ref|YP_656895.1| - 0.0069 16.1 1.6 0.26 11.0 0.0 2.1 2 0 0 2 2 2 1 PhnA Zinc-Ribbon FYVE PF01363.16 gi|110667084|ref|YP_656895.1| - 0.014 15.3 0.7 0.022 14.6 0.5 1.4 1 1 0 1 1 1 0 FYVE zinc finger TF_Zn_Ribbon PF08271.7 gi|110667084|ref|YP_656895.1| - 0.02 14.1 1.1 1.6 8.1 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-NADH-PPase PF09297.6 gi|110667084|ref|YP_656895.1| - 0.045 13.2 2.7 0.96 9.0 0.1 2.5 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ISL3 PF14690.1 gi|110667084|ref|YP_656895.1| - 0.058 13.4 0.9 4.9 7.2 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Prok-RING_1 PF14446.1 gi|110667084|ref|YP_656895.1| - 0.14 11.9 1.6 1.2 8.9 0.2 2.0 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.1 gi|110667084|ref|YP_656895.1| - 0.2 11.1 5.2 2.7 7.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|110667084|ref|YP_656895.1| - 0.24 11.1 5.7 0.83 9.3 4.0 1.8 1 1 0 1 1 1 0 Nudix N-terminal zf-HYPF PF07503.7 gi|110667084|ref|YP_656895.1| - 0.27 10.6 2.2 2.6 7.5 0.2 2.2 2 0 0 2 2 2 0 HypF finger Sgf11 PF08209.6 gi|110667084|ref|YP_656895.1| - 0.29 10.4 2.6 9.2 5.6 0.1 2.3 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Zn-ribbon_8 PF09723.5 gi|110667084|ref|YP_656895.1| - 0.53 10.2 5.6 4.3 7.3 3.6 2.1 1 1 0 1 1 1 0 Zinc ribbon domain DUF35_N PF12172.3 gi|110667084|ref|YP_656895.1| - 1.1 9.2 5.0 10 6.2 0.0 2.4 2 1 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF1610 PF07754.6 gi|110667084|ref|YP_656895.1| - 1.2 9.3 5.9 6.1 7.0 0.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-IS66 PF13005.2 gi|110667084|ref|YP_656895.1| - 3.5 7.6 5.8 2.9 7.9 0.2 2.4 2 2 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn_Tnp_IS1595 PF12760.2 gi|110667084|ref|YP_656895.1| - 4 7.3 5.7 4.5 7.1 0.4 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain RecR PF02132.10 gi|110667084|ref|YP_656895.1| - 4.2 6.8 7.4 15 5.1 5.1 1.8 1 1 0 1 1 1 0 RecR protein zf-RING_3 PF14369.1 gi|110667084|ref|YP_656895.1| - 4.5 7.3 6.6 38 4.3 4.3 2.2 1 1 0 1 1 1 0 zinc-finger Peptidase_M3 PF01432.15 gi|110667085|ref|YP_656896.1| - 1.3e-69 235.4 3.3 1.7e-69 235.0 0.3 2.0 2 0 0 2 2 2 1 Peptidase family M3 Peptidase_M3_N PF08439.5 gi|110667085|ref|YP_656896.1| - 9e-24 83.3 0.0 6.5e-23 80.5 0.1 2.6 2 0 0 2 2 2 1 Oligopeptidase F MCR_beta_N PF02783.10 gi|110667085|ref|YP_656896.1| - 0.091 12.2 0.2 0.19 11.1 0.1 1.6 1 0 0 1 1 1 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain NIR_SIR PF01077.17 gi|110667090|ref|YP_656901.1| - 4.4e-38 130.1 0.0 1.5e-26 92.5 0.0 2.5 3 0 0 3 3 3 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|110667090|ref|YP_656901.1| - 6.2e-35 118.6 0.0 1.5e-16 59.7 0.0 3.2 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain DUF2993 PF11209.3 gi|110667091|ref|YP_656902.1| - 0.051 13.4 0.6 0.069 13.0 0.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2993) HTH_AsnC-type PF13404.1 gi|110667092|ref|YP_656903.1| - 2.8e-16 58.7 0.7 6.2e-16 57.6 0.5 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|110667092|ref|YP_656903.1| - 1.1e-15 56.7 0.1 1.6e-15 56.2 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|110667092|ref|YP_656903.1| - 7.5e-05 22.3 0.0 0.00012 21.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|110667092|ref|YP_656903.1| - 0.00013 21.6 0.0 0.0002 20.9 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|110667092|ref|YP_656903.1| - 0.00022 20.8 0.1 0.00038 20.0 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_Tnp_ISL3 PF13542.1 gi|110667092|ref|YP_656903.1| - 0.0009 18.3 0.0 0.0019 17.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_27 PF13463.1 gi|110667092|ref|YP_656903.1| - 0.0019 18.5 0.3 0.0039 17.4 0.1 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|110667092|ref|YP_656903.1| - 0.0021 18.0 0.0 0.031 14.2 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_20 PF12840.2 gi|110667092|ref|YP_656903.1| - 0.0046 16.7 0.0 0.0087 15.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|110667092|ref|YP_656903.1| - 0.0064 16.1 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB zf-FCS PF06467.9 gi|110667092|ref|YP_656903.1| - 0.0097 15.5 2.5 0.016 14.8 1.7 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif HTH_23 PF13384.1 gi|110667092|ref|YP_656903.1| - 0.01 15.4 0.1 0.16 11.6 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain ATPase-cat_bd PF12156.3 gi|110667092|ref|YP_656903.1| - 0.018 15.5 2.7 0.038 14.5 1.9 1.6 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase RNHCP PF12647.2 gi|110667092|ref|YP_656903.1| - 0.029 14.1 0.7 0.051 13.4 0.5 1.3 1 0 0 1 1 1 0 RNHCP domain Fe_dep_repress PF01325.14 gi|110667092|ref|YP_656903.1| - 0.03 14.2 0.0 0.048 13.5 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_1 PF00126.22 gi|110667092|ref|YP_656903.1| - 0.038 13.7 0.0 0.08 12.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Mga PF08280.6 gi|110667092|ref|YP_656903.1| - 0.044 13.5 0.0 0.07 12.9 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Arc_trans_TRASH PF08394.5 gi|110667092|ref|YP_656903.1| - 0.048 13.8 2.7 0.095 12.8 1.8 1.5 1 0 0 1 1 1 0 Archaeal TRASH domain HTH_IclR PF09339.5 gi|110667092|ref|YP_656903.1| - 0.054 13.1 0.0 0.09 12.3 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|110667092|ref|YP_656903.1| - 0.12 12.0 0.1 0.19 11.3 0.1 1.4 1 0 0 1 1 1 0 HTH domain Ta0938 PF11494.3 gi|110667092|ref|YP_656903.1| - 0.12 12.4 0.2 0.21 11.7 0.1 1.3 1 0 0 1 1 1 0 Ta0938 zf-H2C2_2 PF13465.1 gi|110667092|ref|YP_656903.1| - 0.39 11.0 2.1 0.77 10.1 0.5 2.0 2 0 0 2 2 2 0 Zinc-finger double domain E1-E2_ATPase PF00122.15 gi|110667093|ref|YP_656904.1| - 1e-52 178.5 3.9 2.4e-52 177.2 2.7 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|110667093|ref|YP_656904.1| - 1.1e-52 179.6 7.7 2.6e-52 178.3 5.3 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|110667093|ref|YP_656904.1| - 2.2e-21 75.7 0.7 8.5e-12 45.0 0.0 2.9 3 0 0 3 3 3 2 Heavy-metal-associated domain HAD PF12710.2 gi|110667093|ref|YP_656904.1| - 1.6e-17 64.2 1.0 4.8e-17 62.7 0.7 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|110667093|ref|YP_656904.1| - 1.3e-05 24.9 1.2 0.0036 16.9 0.3 2.5 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|110667093|ref|YP_656904.1| - 0.0046 16.8 0.0 0.027 14.3 0.0 2.3 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Pyr_redox_2 PF07992.9 gi|110667094|ref|YP_656905.1| - 1.1e-32 113.5 0.1 4.1e-32 111.6 0.1 2.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|110667094|ref|YP_656905.1| - 1.7e-21 76.4 2.7 8.4e-17 61.3 0.0 3.7 4 0 0 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|110667094|ref|YP_656905.1| - 2.6e-10 40.3 0.0 1.5e-09 37.8 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HI0933_like PF03486.9 gi|110667094|ref|YP_656905.1| - 8.4e-08 31.0 0.1 0.18 10.2 0.0 4.0 3 1 1 4 4 4 3 HI0933-like protein DAO PF01266.19 gi|110667094|ref|YP_656905.1| - 1.4e-05 24.2 3.7 0.51 9.1 0.3 4.2 4 0 0 4 4 4 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|110667094|ref|YP_656905.1| - 3e-05 23.9 0.5 0.0038 17.2 0.0 3.2 4 0 0 4 4 4 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|110667094|ref|YP_656905.1| - 8.8e-05 22.6 0.0 0.008 16.2 0.0 2.9 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|110667094|ref|YP_656905.1| - 0.003 17.2 0.0 0.0053 16.4 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|110667094|ref|YP_656905.1| - 0.0072 16.1 0.8 3.7 7.2 0.0 3.8 3 1 1 4 4 4 1 FAD-NAD(P)-binding Amino_oxidase PF01593.19 gi|110667094|ref|YP_656905.1| - 0.047 12.7 0.1 5.2 6.0 0.0 2.3 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|110667094|ref|YP_656905.1| - 0.052 12.9 0.0 0.59 9.4 0.0 2.3 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|110667094|ref|YP_656905.1| - 0.12 11.4 0.0 0.28 10.3 0.0 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GIDA PF01134.17 gi|110667094|ref|YP_656905.1| - 0.27 10.0 2.2 7.1 5.3 0.2 3.3 3 1 1 4 4 4 0 Glucose inhibited division protein A Beta-Casp PF10996.3 gi|110667095|ref|YP_656906.1| - 9.2e-20 70.8 0.0 3e-19 69.2 0.0 1.8 2 0 0 2 2 2 1 Beta-Casp domain RMMBL PF07521.7 gi|110667095|ref|YP_656906.1| - 4.5e-13 48.7 0.0 1e-12 47.6 0.0 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|110667095|ref|YP_656906.1| - 2.1e-12 47.0 0.5 5.4e-12 45.6 0.4 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|110667095|ref|YP_656906.1| - 7.3e-12 45.3 1.9 1.1e-11 44.7 1.3 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|110667095|ref|YP_656906.1| - 0.0062 16.2 0.4 0.056 13.1 0.2 2.3 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Rhodanese PF00581.15 gi|110667095|ref|YP_656906.1| - 0.03 14.6 0.1 0.25 11.7 0.0 2.3 3 0 0 3 3 3 0 Rhodanese-like domain DUF4307 PF14155.1 gi|110667096|ref|YP_656907.1| - 0.022 14.5 0.4 0.47 10.2 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) DUF916 PF06030.7 gi|110667096|ref|YP_656907.1| - 0.035 13.9 1.3 0.066 13.0 0.1 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF916) Glyoxalase PF00903.20 gi|110667097|ref|YP_656908.1| - 2.1e-07 30.9 0.0 2.9e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|110667097|ref|YP_656908.1| - 1.1e-06 28.5 0.0 2.1e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|110667097|ref|YP_656908.1| - 1.6e-06 28.6 0.2 3.4e-06 27.6 0.0 1.6 2 0 0 2 2 2 1 Glyoxalase-like domain ADH_zinc_N PF00107.21 gi|110667098|ref|YP_656909.1| - 2.2e-26 91.9 1.0 4e-26 91.0 0.7 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|110667098|ref|YP_656909.1| - 1.5e-24 85.8 1.8 1.5e-24 85.8 1.2 2.0 2 1 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_N_assoc PF13823.1 gi|110667098|ref|YP_656909.1| - 4.3e-05 23.0 0.1 0.00015 21.3 0.0 2.0 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated ADH_zinc_N_2 PF13602.1 gi|110667098|ref|YP_656909.1| - 0.0012 19.6 0.4 0.0027 18.6 0.1 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase AA_permease_2 PF13520.1 gi|110667099|ref|YP_656910.1| - 8.3e-52 176.1 45.8 1e-51 175.8 31.8 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|110667099|ref|YP_656910.1| - 1.4e-46 158.8 42.8 1.8e-46 158.5 29.7 1.0 1 0 0 1 1 1 1 Amino acid permease TrkA_N PF02254.13 gi|110667100|ref|YP_656911.1| - 1.6e-22 79.6 1.8 2.6e-22 78.9 0.4 1.8 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.16 gi|110667100|ref|YP_656911.1| - 5.9e-07 28.9 0.1 1.3e-06 27.8 0.1 1.6 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|110667100|ref|YP_656911.1| - 3.2e-06 27.3 0.1 5.6e-06 26.5 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|110667100|ref|YP_656911.1| - 2.5e-05 24.3 0.7 4.3e-05 23.5 0.5 1.4 1 0 0 1 1 1 1 NADH(P)-binding XdhC_C PF13478.1 gi|110667100|ref|YP_656911.1| - 0.001 19.3 0.1 0.002 18.4 0.1 1.7 1 1 0 1 1 1 1 XdhC Rossmann domain DAO PF01266.19 gi|110667100|ref|YP_656911.1| - 0.0016 17.4 0.1 0.0021 17.0 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase F420_oxidored PF03807.12 gi|110667100|ref|YP_656911.1| - 0.0022 18.3 0.0 0.0053 17.1 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|110667100|ref|YP_656911.1| - 0.0043 16.0 0.1 0.0053 15.7 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase Shikimate_DH PF01488.15 gi|110667100|ref|YP_656911.1| - 0.0045 17.0 0.1 0.0056 16.7 0.1 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NmrA PF05368.8 gi|110667100|ref|YP_656911.1| - 0.0067 15.7 0.1 0.0099 15.1 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family GFO_IDH_MocA PF01408.17 gi|110667100|ref|YP_656911.1| - 0.0095 16.4 0.0 0.019 15.4 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CPSase_L_chain PF00289.17 gi|110667100|ref|YP_656911.1| - 0.012 15.6 0.4 0.036 14.1 0.1 1.8 1 1 1 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain FAD_binding_3 PF01494.14 gi|110667100|ref|YP_656911.1| - 0.014 14.4 0.0 0.023 13.7 0.0 1.4 1 0 0 1 1 1 0 FAD binding domain Pyr_redox PF00070.22 gi|110667100|ref|YP_656911.1| - 0.019 15.3 0.1 0.04 14.3 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|110667100|ref|YP_656911.1| - 0.022 14.4 0.2 0.047 13.3 0.1 1.6 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Epimerase PF01370.16 gi|110667100|ref|YP_656911.1| - 0.023 14.1 0.5 0.039 13.4 0.1 1.5 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family 2-Hacid_dh_C PF02826.14 gi|110667100|ref|YP_656911.1| - 0.033 13.3 0.0 0.049 12.7 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|110667100|ref|YP_656911.1| - 0.034 13.5 0.0 0.055 12.8 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF1623 PF07785.6 gi|110667100|ref|YP_656911.1| - 0.043 13.7 0.0 0.075 12.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1623) ACT PF01842.20 gi|110667100|ref|YP_656911.1| - 0.21 11.1 1.2 0.88 9.1 0.1 2.4 2 0 0 2 2 2 0 ACT domain MFS_1 PF07690.11 gi|110667101|ref|YP_656912.1| - 3.2e-48 164.2 82.6 1e-40 139.5 35.3 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily NADH_4Fe-4S PF10589.4 gi|110667102|ref|YP_656913.1| - 1.8e-13 49.4 1.0 3.2e-13 48.5 0.2 1.9 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Complex1_51K PF01512.12 gi|110667102|ref|YP_656913.1| - 3.4e-10 39.8 0.0 5.5e-10 39.1 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit AcetDehyd-dimer PF09290.6 gi|110667102|ref|YP_656913.1| - 0.014 15.3 0.3 0.03 14.2 0.2 1.5 1 0 0 1 1 1 0 Prokaryotic acetaldehyde dehydrogenase, dimerisation Fer2_4 PF13510.1 gi|110667103|ref|YP_656914.1| - 1.8e-22 78.9 0.9 4.7e-22 77.6 0.6 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.4 gi|110667103|ref|YP_656914.1| - 2.9e-14 51.9 0.5 2.9e-14 51.9 0.4 2.5 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4_7 PF12838.2 gi|110667103|ref|YP_656914.1| - 5.2e-09 36.3 9.6 5.2e-09 36.3 6.6 2.9 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|110667103|ref|YP_656914.1| - 7.2e-09 35.3 8.6 7.2e-09 35.3 5.9 2.5 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|110667103|ref|YP_656914.1| - 3e-08 33.1 12.0 1.1e-05 25.0 2.4 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|110667103|ref|YP_656914.1| - 4.7e-08 32.6 22.9 1.2e-06 28.2 9.3 3.6 2 2 2 4 4 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|110667103|ref|YP_656914.1| - 4e-07 29.3 25.1 0.00016 21.1 1.3 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|110667103|ref|YP_656914.1| - 5.2e-07 29.5 18.6 1e-06 28.6 6.1 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|110667103|ref|YP_656914.1| - 2.9e-06 27.7 8.1 0.0027 18.2 0.4 3.4 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|110667103|ref|YP_656914.1| - 4.3e-06 26.3 26.3 0.00011 21.8 1.6 4.2 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|110667103|ref|YP_656914.1| - 3.3e-05 24.0 22.3 5.1e-05 23.4 9.4 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|110667103|ref|YP_656914.1| - 0.00014 22.1 14.1 0.025 14.9 0.1 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|110667103|ref|YP_656914.1| - 0.0027 18.4 2.7 0.0027 18.4 1.9 3.7 3 2 2 5 5 3 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|110667103|ref|YP_656914.1| - 0.0062 16.9 0.8 0.0062 16.9 0.5 3.6 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|110667103|ref|YP_656914.1| - 0.06 13.7 1.5 0.06 13.7 1.0 4.0 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|110667103|ref|YP_656914.1| - 1.6 9.2 23.1 0.19 12.1 2.1 3.7 4 0 0 4 4 4 0 4Fe-4S single cluster domain DiS_P_DiS PF06750.8 gi|110667103|ref|YP_656914.1| - 4.6 7.1 6.8 7 6.5 0.1 2.7 2 2 0 2 2 2 0 Bacterial Peptidase A24 N-terminal domain Molybdopterin PF00384.17 gi|110667104|ref|YP_656915.1| - 6.1e-78 262.4 0.0 7.4e-78 262.2 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|110667104|ref|YP_656915.1| - 8.7e-32 109.2 0.1 2.3e-31 107.8 0.0 1.8 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|110667104|ref|YP_656915.1| - 3.9e-12 45.7 0.0 7.6e-12 44.8 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain PP-binding_2 PF14573.1 gi|110667104|ref|YP_656915.1| - 0.13 12.3 0.9 4.6 7.3 0.0 3.5 4 0 0 4 4 4 0 Acyl-carrier DUF1641 PF07849.6 gi|110667105|ref|YP_656916.1| - 0.001 18.6 0.1 0.0071 15.9 0.0 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF1641) ABC_transp_aux PF09822.4 gi|110667105|ref|YP_656916.1| - 0.02 14.3 1.0 0.024 14.1 0.7 1.2 1 0 0 1 1 1 0 ABC-type uncharacterized transport system GrpE PF01025.14 gi|110667105|ref|YP_656916.1| - 0.061 12.8 2.2 0.076 12.5 1.2 1.4 1 1 0 1 1 1 0 GrpE DED PF01335.16 gi|110667105|ref|YP_656916.1| - 0.096 12.8 3.8 0.16 12.0 1.2 2.3 1 1 2 3 3 3 0 Death effector domain DUF4350 PF14258.1 gi|110667105|ref|YP_656916.1| - 0.1 12.8 2.8 11 6.3 0.1 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) CofC PF01983.11 gi|110667105|ref|YP_656916.1| - 0.32 9.9 4.3 0.22 10.4 0.8 1.9 2 0 0 2 2 2 0 Guanylyl transferase CofC like DUF3383 PF11863.3 gi|110667105|ref|YP_656916.1| - 0.73 8.4 9.4 0.97 8.0 6.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3383) Molybdopterin PF00384.17 gi|110667106|ref|YP_656917.1| - 4.3e-59 200.3 0.0 6.5e-59 199.7 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|110667106|ref|YP_656917.1| - 5.5e-10 39.0 0.2 1.2e-09 37.9 0.2 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|110667106|ref|YP_656917.1| - 9.6e-07 28.5 0.3 2.1e-06 27.4 0.2 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain DUF1936 PF09151.5 gi|110667106|ref|YP_656917.1| - 1.4 8.4 3.6 7.2 6.2 0.9 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) zf-RING_3 PF14369.1 gi|110667107|ref|YP_656918.1| - 0.0088 16.0 0.6 1.9 8.5 0.0 2.4 2 0 0 2 2 2 1 zinc-finger FYDLN_acid PF09538.5 gi|110667107|ref|YP_656918.1| - 0.019 15.5 2.3 0.17 12.4 1.6 2.0 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zf-ribbon_3 PF13248.1 gi|110667107|ref|YP_656918.1| - 0.02 14.1 6.6 0.039 13.1 4.6 1.6 1 1 0 1 1 1 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|110667107|ref|YP_656918.1| - 0.029 14.0 0.4 0.04 13.5 0.3 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) RNHCP PF12647.2 gi|110667107|ref|YP_656918.1| - 0.03 14.1 1.8 0.043 13.6 1.1 1.3 1 1 0 1 1 1 0 RNHCP domain DZR PF12773.2 gi|110667107|ref|YP_656918.1| - 0.057 13.2 2.2 0.67 9.8 1.9 1.9 1 1 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|110667107|ref|YP_656918.1| - 0.068 12.8 0.4 0.094 12.4 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family C1_1 PF00130.17 gi|110667107|ref|YP_656918.1| - 0.11 12.2 1.2 0.14 11.8 0.9 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-RING_5 PF14634.1 gi|110667107|ref|YP_656918.1| - 0.12 12.0 0.9 0.2 11.4 0.6 1.4 1 0 0 1 1 1 0 zinc-RING finger domain zf-C3HC4_2 PF13923.1 gi|110667107|ref|YP_656918.1| - 0.13 12.3 2.3 0.29 11.2 1.2 1.8 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DUF1272 PF06906.6 gi|110667107|ref|YP_656918.1| - 0.14 12.0 1.6 3.2 7.6 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) DUF2387 PF09526.5 gi|110667107|ref|YP_656918.1| - 0.21 11.5 1.2 8.5 6.3 0.1 2.5 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) zf-dskA_traR PF01258.12 gi|110667107|ref|YP_656918.1| - 0.38 10.5 3.5 9.7 6.0 0.3 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zinc_ribbon_5 PF13719.1 gi|110667107|ref|YP_656918.1| - 1.3 8.6 3.5 4.5 6.9 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|110667107|ref|YP_656918.1| - 1.3 8.6 4.2 2.9 7.5 0.2 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.1 gi|110667107|ref|YP_656918.1| - 1.5 8.3 7.2 6.8 6.3 5.0 1.9 1 1 0 1 1 1 0 zinc-ribbon domain DUF2321 PF10083.4 gi|110667108|ref|YP_656919.1| - 0.0049 16.3 0.1 0.029 13.8 0.0 1.9 1 1 1 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2321) Epimerase PF01370.16 gi|110667109|ref|YP_656920.1| - 7.3e-19 68.1 0.0 1.2e-18 67.4 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|110667109|ref|YP_656920.1| - 7.5e-17 60.9 0.0 9.7e-17 60.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|110667109|ref|YP_656920.1| - 4.3e-12 45.5 0.2 6.1e-09 35.1 0.1 2.7 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|110667109|ref|YP_656920.1| - 2.6e-11 42.9 0.0 2.3e-10 39.8 0.0 1.9 2 0 0 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.1 gi|110667109|ref|YP_656920.1| - 3.7e-11 43.3 0.0 6.4e-11 42.5 0.0 1.5 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|110667109|ref|YP_656920.1| - 1.9e-06 27.9 0.7 6.6e-06 26.1 0.5 1.8 1 1 0 1 1 1 1 short chain dehydrogenase RmlD_sub_bind PF04321.12 gi|110667109|ref|YP_656920.1| - 0.00099 18.0 0.0 0.0029 16.5 0.0 1.7 1 1 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.8 gi|110667109|ref|YP_656920.1| - 0.0025 17.1 0.0 0.0054 16.0 0.0 1.5 2 0 0 2 2 2 1 NmrA-like family KR PF08659.5 gi|110667109|ref|YP_656920.1| - 0.012 15.2 0.3 0.095 12.3 0.2 2.2 1 1 0 1 1 1 0 KR domain Saccharop_dh PF03435.13 gi|110667109|ref|YP_656920.1| - 0.081 11.8 0.0 0.098 11.6 0.0 1.1 1 0 0 1 1 1 0 Saccharopine dehydrogenase DUF381 PF04038.7 gi|110667110|ref|YP_656921.1| - 1.9e-22 79.0 0.1 2.6e-22 78.6 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) DUF372 PF04036.7 gi|110667110|ref|YP_656921.1| - 5e-22 77.0 0.9 6.4e-22 76.7 0.2 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF372) GPW_gp25 PF04965.9 gi|110667110|ref|YP_656921.1| - 0.0049 16.3 0.0 0.0055 16.2 0.0 1.2 1 0 0 1 1 1 1 Gene 25-like lysozyme DUF883 PF05957.8 gi|110667111|ref|YP_656922.1| - 0.044 14.1 4.0 0.28 11.6 0.1 2.6 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) Apolipoprotein PF01442.13 gi|110667111|ref|YP_656922.1| - 0.045 13.2 5.3 0.17 11.4 3.7 1.8 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain ZapA PF05164.8 gi|110667111|ref|YP_656922.1| - 0.37 10.7 1.8 1.7 8.6 1.2 1.9 1 1 0 1 1 1 0 Cell division protein ZapA DUF4398 PF14346.1 gi|110667111|ref|YP_656922.1| - 1.1 9.4 5.1 6.3 6.9 3.2 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4398) ABC_tran PF00005.22 gi|110667112|ref|YP_656923.1| - 2.2e-37 128.4 0.0 4.1e-37 127.5 0.0 1.5 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|110667112|ref|YP_656923.1| - 3e-34 118.6 6.0 4.3e-34 118.1 4.1 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.1 gi|110667112|ref|YP_656923.1| - 2.7e-06 27.5 0.0 6.8e-05 22.9 0.0 2.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|110667112|ref|YP_656923.1| - 9.1e-05 22.6 0.1 0.00057 20.0 0.1 2.2 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|110667112|ref|YP_656923.1| - 0.00018 20.6 0.0 0.00032 19.8 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin DUF258 PF03193.11 gi|110667112|ref|YP_656923.1| - 0.00036 19.7 0.0 0.00064 18.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|110667112|ref|YP_656923.1| - 0.00041 21.1 0.0 0.0009 20.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|110667112|ref|YP_656923.1| - 0.0026 17.7 0.0 0.0066 16.4 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|110667112|ref|YP_656923.1| - 0.003 17.0 0.1 0.0087 15.5 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|110667112|ref|YP_656923.1| - 0.0044 17.3 0.1 0.017 15.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|110667112|ref|YP_656923.1| - 0.0099 15.1 0.4 0.42 9.8 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|110667112|ref|YP_656923.1| - 0.028 14.6 0.0 0.18 12.0 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|110667112|ref|YP_656923.1| - 0.031 14.1 0.0 0.11 12.3 0.0 2.0 2 0 0 2 2 1 0 AAA domain AAA_30 PF13604.1 gi|110667112|ref|YP_656923.1| - 0.048 13.2 0.2 0.25 10.9 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|110667112|ref|YP_656923.1| - 0.063 12.6 0.1 0.14 11.6 0.1 1.7 1 1 0 1 1 1 0 AAA-like domain AAA_5 PF07728.9 gi|110667112|ref|YP_656923.1| - 0.071 12.8 0.1 0.56 9.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF903 PF06004.7 gi|110667112|ref|YP_656923.1| - 0.074 12.5 0.1 0.27 10.7 0.1 2.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF903) Guanylate_kin PF00625.16 gi|110667112|ref|YP_656923.1| - 0.13 11.6 0.1 0.41 10.0 0.1 1.8 1 1 0 1 1 1 0 Guanylate kinase AAA_23 PF13476.1 gi|110667112|ref|YP_656923.1| - 0.15 12.3 0.2 0.36 11.1 0.1 1.5 1 0 0 1 1 1 0 AAA domain DUF192 PF02643.10 gi|110667114|ref|YP_656925.1| - 9.5e-30 102.4 0.0 1.2e-29 102.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 GvpG PF05120.7 gi|110667116|ref|YP_656927.1| - 0.00025 20.7 1.0 0.00027 20.6 0.0 1.6 2 0 0 2 2 2 1 Gas vesicle protein G SHOCT PF09851.4 gi|110667116|ref|YP_656927.1| - 0.001 18.4 0.5 0.0017 17.7 0.0 1.6 2 0 0 2 2 2 1 Short C-terminal domain ABC2_membrane_2 PF12679.2 gi|110667117|ref|YP_656928.1| - 3.8e-20 71.8 21.3 6.1e-20 71.2 14.8 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|110667117|ref|YP_656928.1| - 1.5e-06 27.5 28.8 2.2e-06 27.0 20.0 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|110667118|ref|YP_656929.1| - 4.4e-28 97.9 15.7 7.5e-28 97.1 10.9 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|110667118|ref|YP_656929.1| - 5.8e-12 45.2 19.4 7.5e-12 44.9 13.3 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|110667118|ref|YP_656929.1| - 7.9e-06 25.1 18.8 7.9e-06 25.1 13.1 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|110667118|ref|YP_656929.1| - 0.00083 18.7 9.7 0.00083 18.7 6.7 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|110667118|ref|YP_656929.1| - 0.21 10.7 21.3 0.0086 15.2 10.0 1.8 2 0 0 2 2 2 0 ABC-2 type transporter Vma12 PF11712.3 gi|110667118|ref|YP_656929.1| - 4.6 6.9 8.3 2.3 7.9 4.0 1.8 2 0 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase ABC_tran PF00005.22 gi|110667119|ref|YP_656930.1| - 4.7e-29 101.4 0.0 1.3e-28 100.0 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|110667119|ref|YP_656930.1| - 1.3e-13 51.5 0.0 2e-07 31.2 0.0 2.3 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|110667119|ref|YP_656930.1| - 2.6e-05 24.6 0.0 5.8e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_10 PF12846.2 gi|110667119|ref|YP_656930.1| - 3.5e-05 23.4 0.0 0.00051 19.5 0.0 2.0 1 1 1 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|110667119|ref|YP_656930.1| - 0.0028 16.8 0.0 0.0073 15.5 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|110667119|ref|YP_656930.1| - 0.0061 15.8 0.0 3.5 6.7 0.0 2.4 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|110667119|ref|YP_656930.1| - 0.0094 16.3 1.7 0.012 15.9 0.1 1.8 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|110667119|ref|YP_656930.1| - 0.013 15.0 0.1 0.03 13.8 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Lum_binding PF00677.12 gi|110667119|ref|YP_656930.1| - 0.24 11.3 2.8 6.5 6.7 0.0 2.8 3 0 0 3 3 3 0 Lumazine binding domain NAD_binding_10 PF13460.1 gi|110667120|ref|YP_656931.1| - 9.5e-26 90.9 3.2 1.2e-25 90.6 2.2 1.1 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|110667120|ref|YP_656931.1| - 1.8e-08 33.9 0.1 9.2e-08 31.6 0.0 2.0 1 1 0 1 1 1 1 NmrA-like family 3Beta_HSD PF01073.14 gi|110667120|ref|YP_656931.1| - 0.00015 20.5 0.0 0.00019 20.2 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.16 gi|110667120|ref|YP_656931.1| - 0.00031 20.2 0.1 0.00084 18.8 0.1 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family ADH_zinc_N PF00107.21 gi|110667120|ref|YP_656931.1| - 0.00097 18.6 0.2 0.0017 17.8 0.2 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase TrkA_N PF02254.13 gi|110667120|ref|YP_656931.1| - 0.06 13.3 0.1 0.17 11.8 0.1 1.9 1 0 0 1 1 1 0 TrkA-N domain ADH_zinc_N_2 PF13602.1 gi|110667120|ref|YP_656931.1| - 0.11 13.3 0.4 0.21 12.4 0.3 1.6 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Ion_trans_2 PF07885.11 gi|110667121|ref|YP_656932.1| - 3.9e-15 55.3 7.0 3.9e-15 55.3 4.8 2.4 2 1 1 3 3 3 1 Ion channel Ion_trans PF00520.26 gi|110667121|ref|YP_656932.1| - 6.5e-10 38.5 11.0 1.5e-09 37.3 6.1 2.4 2 1 0 2 2 2 1 Ion transport protein UPF0547 PF10571.4 gi|110667121|ref|YP_656932.1| - 0.00016 21.3 2.8 0.00031 20.3 2.0 1.5 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|110667121|ref|YP_656932.1| - 0.00018 20.6 0.5 0.00027 20.0 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DUF979 PF06166.7 gi|110667121|ref|YP_656932.1| - 0.0023 16.9 0.5 0.027 13.4 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF979) DZR PF12773.2 gi|110667121|ref|YP_656932.1| - 0.0029 17.3 0.3 0.0048 16.6 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|110667121|ref|YP_656932.1| - 0.0034 16.8 1.0 0.0055 16.1 0.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DnaJ_CXXCXGXG PF00684.14 gi|110667121|ref|YP_656932.1| - 0.088 12.8 0.3 0.13 12.3 0.2 1.2 1 0 0 1 1 1 0 DnaJ central domain DUF2688 PF10892.3 gi|110667123|ref|YP_656934.1| - 0.027 14.1 0.0 0.061 12.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2688) Marek_SORF3 PF07153.6 gi|110667123|ref|YP_656934.1| - 0.11 11.1 0.0 0.15 10.6 0.0 1.2 1 0 0 1 1 1 0 Marek's disease-like virus SORF3 protein zf-TFIIB PF13453.1 gi|110667123|ref|YP_656934.1| - 0.13 11.5 2.1 3.3 6.9 0.2 2.4 2 0 0 2 2 2 0 Transcription factor zinc-finger HhH-GPD PF00730.20 gi|110667125|ref|YP_656936.1| - 1.7e-16 60.4 0.0 2.4e-16 59.9 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|110667125|ref|YP_656936.1| - 2e-05 24.0 0.0 5.6e-05 22.6 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|110667125|ref|YP_656936.1| - 0.00019 21.5 0.2 0.0008 19.5 0.1 2.0 1 1 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|110667125|ref|YP_656936.1| - 0.0004 20.2 0.2 0.73 9.7 0.0 3.1 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_8 PF14716.1 gi|110667125|ref|YP_656936.1| - 0.0075 16.4 0.3 0.037 14.2 0.2 2.0 1 1 0 1 1 1 1 Helix-hairpin-helix domain DUF3701 PF12482.3 gi|110667125|ref|YP_656936.1| - 0.043 13.5 0.1 0.27 10.9 0.0 2.1 1 1 1 2 2 2 0 Phage integrase protein Peripla_BP_2 PF01497.13 gi|110667126|ref|YP_656937.1| - 7.9e-19 67.7 0.0 1.7e-18 66.6 0.0 1.5 1 1 0 1 1 1 1 Periplasmic binding protein Raptor_N PF14538.1 gi|110667126|ref|YP_656937.1| - 0.17 11.7 0.1 0.46 10.3 0.0 1.6 2 0 0 2 2 2 0 Raptor N-terminal CASPase like domain TFIIB PF00382.14 gi|110667127|ref|YP_656938.1| - 7.8e-40 134.5 0.3 1.2e-20 73.1 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|110667127|ref|YP_656938.1| - 1.5e-14 53.0 4.5 1.6e-14 52.9 2.0 1.9 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|110667127|ref|YP_656938.1| - 0.0014 17.9 1.1 0.83 9.0 0.0 3.9 4 0 0 4 4 4 1 Sigma-70, region 4 TrmB PF01978.14 gi|110667127|ref|YP_656938.1| - 0.037 13.7 1.5 5.5 6.7 0.1 2.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.1 gi|110667127|ref|YP_656938.1| - 0.073 12.6 2.3 0.69 9.5 0.0 3.5 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain DZR PF12773.2 gi|110667127|ref|YP_656938.1| - 0.37 10.6 1.9 0.94 9.3 1.4 1.6 1 1 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|110667127|ref|YP_656938.1| - 1.8 8.3 5.3 0.4 10.3 1.0 1.9 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DHquinase_I PF01487.10 gi|110667128|ref|YP_656939.1| - 1.9e-49 168.3 0.1 2.1e-49 168.1 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase DHQS PF01959.11 gi|110667129|ref|YP_656940.1| - 3.1e-148 493.1 6.2 3.6e-148 492.9 4.3 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) Hint_2 PF13403.1 gi|110667129|ref|YP_656940.1| - 0.012 15.5 0.3 1.4 8.8 0.0 2.7 2 0 0 2 2 2 0 Hint domain Response_reg PF00072.19 gi|110667129|ref|YP_656940.1| - 0.016 15.2 0.1 0.071 13.1 0.0 2.1 2 1 1 3 3 3 0 Response regulator receiver domain QRPTase_C PF01729.14 gi|110667129|ref|YP_656940.1| - 0.031 13.8 0.2 0.031 13.8 0.1 2.3 3 1 0 3 3 3 0 Quinolinate phosphoribosyl transferase, C-terminal domain UPF0086 PF01868.11 gi|110667129|ref|YP_656940.1| - 0.038 13.6 0.1 0.1 12.2 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function UPF0086 DeoC PF01791.4 gi|110667130|ref|YP_656941.1| - 8.1e-39 133.3 0.0 1e-38 133.0 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.19 gi|110667130|ref|YP_656941.1| - 0.00014 21.2 0.0 0.00021 20.6 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel PEP_mutase PF13714.1 gi|110667130|ref|YP_656941.1| - 0.037 13.2 0.3 0.27 10.3 0.2 2.4 1 1 1 2 2 2 0 Phosphoenolpyruvate phosphomutase HgmA PF04209.8 gi|110667130|ref|YP_656941.1| - 0.043 12.2 0.0 0.067 11.5 0.0 1.2 1 0 0 1 1 1 0 homogentisate 1,2-dioxygenase TMP-TENI PF02581.12 gi|110667130|ref|YP_656941.1| - 0.049 12.7 1.1 1.1 8.3 0.3 2.6 3 1 0 3 3 3 0 Thiamine monophosphate synthase/TENI DUF561 PF04481.7 gi|110667130|ref|YP_656941.1| - 0.099 11.5 0.1 0.15 10.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF561) Trp_syntA PF00290.15 gi|110667131|ref|YP_656942.1| - 1.4e-90 302.3 0.0 1.6e-90 302.1 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|110667131|ref|YP_656942.1| - 0.00026 20.3 0.6 0.00067 18.9 0.4 1.7 2 0 0 2 2 2 1 PcrB family His_biosynth PF00977.16 gi|110667131|ref|YP_656942.1| - 0.0027 17.0 0.2 0.0042 16.3 0.1 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein PALP PF00291.20 gi|110667132|ref|YP_656943.1| - 1.7e-33 116.1 0.2 2.7e-33 115.5 0.1 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IGPS PF00218.16 gi|110667133|ref|YP_656944.1| - 2.3e-71 239.8 0.1 2.8e-71 239.5 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.13 gi|110667133|ref|YP_656944.1| - 1.4e-07 30.7 0.6 2.1e-07 30.1 0.4 1.4 1 1 0 1 1 1 1 FMN-dependent dehydrogenase NanE PF04131.9 gi|110667133|ref|YP_656944.1| - 2.5e-06 26.6 0.8 3.6e-05 22.8 0.6 2.4 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase QRPTase_C PF01729.14 gi|110667133|ref|YP_656944.1| - 6.5e-06 25.7 0.2 4.3e-05 23.1 0.0 2.1 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain His_biosynth PF00977.16 gi|110667133|ref|YP_656944.1| - 0.00018 20.8 0.0 0.0011 18.2 0.0 2.1 2 0 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.12 gi|110667133|ref|YP_656944.1| - 0.00074 18.8 0.1 0.002 17.4 0.0 1.7 2 0 0 2 2 2 1 PcrB family DeoC PF01791.4 gi|110667133|ref|YP_656944.1| - 0.0017 17.6 0.5 0.52 9.5 0.0 2.6 2 1 0 2 2 2 2 DeoC/LacD family aldolase DHO_dh PF01180.16 gi|110667133|ref|YP_656944.1| - 0.0023 16.9 0.0 0.0046 15.9 0.0 1.5 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|110667133|ref|YP_656944.1| - 0.022 13.5 0.2 0.067 12.0 0.0 1.8 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|110667133|ref|YP_656944.1| - 0.042 12.9 0.1 0.13 11.3 0.0 1.9 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG DNA_binding_1 PF01035.15 gi|110667134|ref|YP_656945.1| - 2.5e-11 43.1 0.0 4.1e-11 42.4 0.0 1.4 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Nuc_rec_co-act PF08815.5 gi|110667134|ref|YP_656945.1| - 0.061 12.8 1.7 0.073 12.6 0.3 1.9 2 0 0 2 2 2 0 Nuclear receptor coactivator Polyketide_cyc2 PF10604.4 gi|110667135|ref|YP_656946.1| - 2.4e-21 76.3 0.1 2.7e-21 76.2 0.1 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|110667135|ref|YP_656946.1| - 2.7e-07 30.6 0.0 4.3e-07 29.9 0.0 1.3 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|110667135|ref|YP_656946.1| - 0.0068 16.5 0.1 0.0074 16.3 0.0 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein COXG PF06240.8 gi|110667135|ref|YP_656946.1| - 0.071 12.7 0.1 0.42 10.2 0.0 2.4 1 1 0 1 1 1 0 Carbon monoxide dehydrogenase subunit G (CoxG) Abi PF02517.11 gi|110667136|ref|YP_656947.1| - 6e-13 48.7 15.3 5.4e-12 45.6 7.2 2.5 2 1 0 2 2 2 2 CAAX protease self-immunity CPSF100_C PF13299.1 gi|110667136|ref|YP_656947.1| - 0.58 10.3 2.7 0.84 9.8 1.9 1.1 1 0 0 1 1 1 0 Cleavage and polyadenylation factor 2 C-terminal Lon_C PF05362.8 gi|110667137|ref|YP_656948.1| - 2.6e-32 111.7 2.7 4.1e-32 111.1 1.9 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|110667137|ref|YP_656948.1| - 1.8e-27 96.2 0.0 3.7e-19 68.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|110667137|ref|YP_656948.1| - 3.5e-17 62.2 0.1 1e-10 41.1 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|110667137|ref|YP_656948.1| - 4.5e-14 52.2 0.0 6.9e-08 32.1 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain MCM PF00493.18 gi|110667137|ref|YP_656948.1| - 3.9e-11 42.3 0.4 0.027 13.2 0.0 3.2 3 0 0 3 3 3 3 MCM2/3/5 family AAA_5 PF07728.9 gi|110667137|ref|YP_656948.1| - 1.9e-10 40.5 0.0 0.00061 19.5 0.0 2.8 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) ChlI PF13541.1 gi|110667137|ref|YP_656948.1| - 6.4e-09 35.3 0.4 1.6e-08 34.0 0.3 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA PF00004.24 gi|110667137|ref|YP_656948.1| - 1.9e-06 28.0 0.0 0.065 13.4 0.0 2.8 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|110667137|ref|YP_656948.1| - 2.4e-05 24.3 0.0 0.16 12.0 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.7 gi|110667137|ref|YP_656948.1| - 2.6e-05 23.4 0.1 0.0027 16.8 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus TIP49 PF06068.8 gi|110667137|ref|YP_656948.1| - 4e-05 22.5 0.0 0.068 11.8 0.0 2.4 2 0 0 2 2 2 2 TIP49 C-terminus AAA_22 PF13401.1 gi|110667137|ref|YP_656948.1| - 0.00018 21.6 0.0 0.0087 16.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_PrkA PF08298.6 gi|110667137|ref|YP_656948.1| - 0.001 17.8 0.0 0.071 11.7 0.0 2.2 2 0 0 2 2 2 1 PrkA AAA domain AAA_3 PF07726.6 gi|110667137|ref|YP_656948.1| - 0.0012 18.4 0.1 1.2 8.7 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|110667137|ref|YP_656948.1| - 0.0016 18.7 0.0 0.0062 16.8 0.0 2.1 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|110667137|ref|YP_656948.1| - 0.0051 16.5 0.0 0.015 15.0 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|110667137|ref|YP_656948.1| - 0.0059 16.2 0.0 0.022 14.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|110667137|ref|YP_656948.1| - 0.006 15.5 0.3 0.099 11.5 0.0 2.7 3 0 0 3 3 3 1 Type II/IV secretion system protein PhoH PF02562.11 gi|110667137|ref|YP_656948.1| - 0.0065 15.7 0.0 0.012 14.7 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA_2 PF07724.9 gi|110667137|ref|YP_656948.1| - 0.0077 16.1 0.1 1.5 8.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_33 PF13671.1 gi|110667137|ref|YP_656948.1| - 0.012 15.4 0.0 0.045 13.6 0.0 2.0 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|110667137|ref|YP_656948.1| - 0.017 14.2 0.0 0.037 13.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin TrwB_AAD_bind PF10412.4 gi|110667137|ref|YP_656948.1| - 0.021 13.4 0.0 0.031 12.9 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF815 PF05673.8 gi|110667137|ref|YP_656948.1| - 0.023 13.6 0.0 0.043 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NACHT PF05729.7 gi|110667137|ref|YP_656948.1| - 0.031 13.9 0.0 0.054 13.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.22 gi|110667137|ref|YP_656948.1| - 0.034 14.4 0.0 0.084 13.1 0.0 1.6 1 0 0 1 1 1 0 ABC transporter IstB_IS21 PF01695.12 gi|110667137|ref|YP_656948.1| - 0.06 12.7 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_17 PF13207.1 gi|110667137|ref|YP_656948.1| - 0.084 13.6 1.4 0.59 10.9 0.0 2.7 2 1 1 3 3 2 0 AAA domain Parvo_NS1 PF01057.12 gi|110667137|ref|YP_656948.1| - 0.11 11.2 0.0 0.19 10.5 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 CTP_transf_2 PF01467.21 gi|110667138|ref|YP_656949.1| - 1.8e-14 54.1 0.2 3.7e-14 53.0 0.1 1.7 1 1 0 1 1 1 1 Cytidylyltransferase YdfZ PF14001.1 gi|110667138|ref|YP_656949.1| - 0.12 12.6 0.2 0.82 9.9 0.0 2.4 3 0 0 3 3 3 0 YdfZ protein SAM_adeno_trans PF01887.11 gi|110667139|ref|YP_656950.1| - 6.9e-81 271.0 0.6 7.7e-81 270.9 0.4 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Cpn60_TCP1 PF00118.19 gi|110667140|ref|YP_656951.1| - 2e-135 452.1 3.1 2.3e-135 451.9 2.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Glycos_transf_2 PF00535.21 gi|110667141|ref|YP_656952.1| - 8.4e-12 45.0 0.1 1.4e-11 44.3 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|110667141|ref|YP_656952.1| - 1.3e-06 28.4 2.5 1.6e-06 28.0 0.3 2.1 2 1 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|110667141|ref|YP_656952.1| - 0.003 16.6 0.0 0.0052 15.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 LysR_substrate PF03466.15 gi|110667141|ref|YP_656952.1| - 0.041 12.9 0.1 7.6 5.5 0.0 2.2 2 0 0 2 2 2 0 LysR substrate binding domain Methyltransf_11 PF08241.7 gi|110667142|ref|YP_656953.1| - 2.4e-22 79.2 0.0 7.5e-22 77.6 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|110667142|ref|YP_656953.1| - 1.3e-15 57.2 0.0 1.9e-15 56.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|110667142|ref|YP_656953.1| - 4.2e-15 56.2 0.0 7.7e-15 55.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|110667142|ref|YP_656953.1| - 6e-15 55.4 0.0 2.3e-14 53.5 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|110667142|ref|YP_656953.1| - 1.8e-14 53.7 0.0 2.5e-14 53.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|110667142|ref|YP_656953.1| - 5.5e-14 51.8 0.0 8.8e-14 51.1 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|110667142|ref|YP_656953.1| - 1.8e-13 50.8 0.0 3.2e-13 49.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|110667142|ref|YP_656953.1| - 6.2e-13 48.8 0.4 1e-12 48.0 0.2 1.6 2 1 0 2 2 1 1 Methyltransferase domain MTS PF05175.9 gi|110667142|ref|YP_656953.1| - 5.8e-07 29.0 0.1 1.4e-06 27.7 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain UPF0020 PF01170.13 gi|110667142|ref|YP_656953.1| - 3.9e-06 26.5 0.0 4.4e-05 23.1 0.0 2.1 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 MetW PF07021.7 gi|110667142|ref|YP_656953.1| - 7.4e-06 25.4 0.0 1.1e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW RrnaAD PF00398.15 gi|110667142|ref|YP_656953.1| - 9.9e-06 24.7 0.0 1.2e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|110667142|ref|YP_656953.1| - 1.3e-05 24.4 0.0 2.3e-05 23.6 0.0 1.3 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.6 gi|110667142|ref|YP_656953.1| - 2.4e-05 23.1 0.0 3.7e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_4 PF02390.12 gi|110667142|ref|YP_656953.1| - 0.00034 19.7 0.0 0.00064 18.8 0.0 1.5 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_29 PF03141.11 gi|110667142|ref|YP_656953.1| - 0.0011 17.4 0.0 0.0014 17.0 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase PCMT PF01135.14 gi|110667142|ref|YP_656953.1| - 0.0014 18.2 0.0 0.002 17.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_15 PF09445.5 gi|110667142|ref|YP_656953.1| - 0.0014 18.1 0.0 0.0021 17.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase tRNA_U5-meth_tr PF05958.6 gi|110667142|ref|YP_656953.1| - 0.0015 17.3 0.0 0.0022 16.7 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase TPMT PF05724.6 gi|110667142|ref|YP_656953.1| - 0.0025 17.3 0.0 0.004 16.6 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) NodS PF05401.6 gi|110667142|ref|YP_656953.1| - 0.0062 15.9 0.0 0.0085 15.5 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_20 PF12147.3 gi|110667142|ref|YP_656953.1| - 0.013 14.3 0.0 0.019 13.8 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase DUF938 PF06080.7 gi|110667142|ref|YP_656953.1| - 0.018 14.5 0.0 0.28 10.7 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF938) FtsJ PF01728.14 gi|110667142|ref|YP_656953.1| - 0.029 14.3 0.0 0.076 12.9 0.0 1.6 1 1 1 2 2 2 0 FtsJ-like methyltransferase Methyltransf_32 PF13679.1 gi|110667142|ref|YP_656953.1| - 0.076 12.7 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain TehB PF03848.9 gi|110667142|ref|YP_656953.1| - 0.1 11.7 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB ACT PF01842.20 gi|110667142|ref|YP_656953.1| - 0.12 11.8 0.1 0.35 10.4 0.0 1.8 2 0 0 2 2 2 0 ACT domain HTH_24 PF13412.1 gi|110667143|ref|YP_656954.1| - 2.9e-06 26.5 0.3 1.6e-05 24.1 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|110667143|ref|YP_656954.1| - 0.00077 19.0 0.1 0.0012 18.4 0.1 1.4 1 1 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|110667143|ref|YP_656954.1| - 0.0023 17.4 0.0 0.0036 16.7 0.0 1.3 1 1 0 1 1 1 1 TFIIE alpha subunit MarR PF01047.17 gi|110667143|ref|YP_656954.1| - 0.0046 16.6 0.0 0.0068 16.0 0.0 1.3 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|110667143|ref|YP_656954.1| - 0.0054 16.1 0.1 0.0083 15.5 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|110667143|ref|YP_656954.1| - 0.0063 16.3 0.3 0.024 14.4 0.1 1.8 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_12 PF08461.5 gi|110667143|ref|YP_656954.1| - 0.0082 15.8 0.5 0.028 14.1 0.1 2.0 2 1 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_27 PF13463.1 gi|110667143|ref|YP_656954.1| - 0.028 14.7 0.0 0.042 14.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain RNA_pol_Rpc34 PF05158.7 gi|110667143|ref|YP_656954.1| - 0.028 13.6 0.0 0.031 13.4 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_36 PF13730.1 gi|110667143|ref|YP_656954.1| - 0.031 14.3 0.0 0.055 13.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|110667143|ref|YP_656954.1| - 0.083 12.6 0.1 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|110667143|ref|YP_656954.1| - 0.09 12.9 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Lactamase_B PF00753.22 gi|110667144|ref|YP_656955.1| - 1.8e-12 47.3 2.5 3e-12 46.5 1.7 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|110667144|ref|YP_656955.1| - 0.00012 21.6 0.1 0.00016 21.3 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain CxxCxxCC PF03692.10 gi|110667145|ref|YP_656956.1| - 2.1e-12 47.3 2.4 3e-07 30.8 0.0 2.6 2 0 0 2 2 2 2 Putative zinc- or iron-chelating domain HIPIP PF01355.12 gi|110667145|ref|YP_656956.1| - 0.042 13.9 0.1 0.042 13.9 0.1 1.9 2 0 0 2 2 2 0 High potential iron-sulfur protein Lin-8 PF03353.10 gi|110667145|ref|YP_656956.1| - 6 6.0 8.2 7.9 5.6 5.7 1.2 1 0 0 1 1 1 0 Ras-mediated vulval-induction antagonist TRAM PF01938.15 gi|110667146|ref|YP_656957.1| - 1.9e-13 49.9 1.4 3.3e-13 49.1 1.0 1.3 1 0 0 1 1 1 1 TRAM domain Hexapep PF00132.19 gi|110667146|ref|YP_656957.1| - 0.13 11.7 0.1 0.21 11.1 0.1 1.4 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) Radical_SAM PF04055.16 gi|110667147|ref|YP_656958.1| - 2e-14 54.1 0.0 4.9e-14 52.8 0.0 1.8 1 0 0 1 1 1 1 Radical SAM superfamily HHH PF00633.18 gi|110667147|ref|YP_656958.1| - 2.1e-05 23.9 0.0 7.1e-05 22.2 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|110667147|ref|YP_656958.1| - 0.00068 19.5 0.0 0.0016 18.3 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|110667147|ref|YP_656958.1| - 0.004 17.2 0.0 0.037 14.1 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|110667147|ref|YP_656958.1| - 0.12 12.2 0.1 0.32 10.8 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif PsbU PF06514.6 gi|110667147|ref|YP_656958.1| - 0.14 12.0 0.0 0.39 10.5 0.0 1.7 1 0 0 1 1 1 0 Photosystem II 12 kDa extrinsic protein (PsbU) DUF429 PF04250.8 gi|110667148|ref|YP_656959.1| - 1.3e-05 24.5 0.2 2.5e-05 23.6 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF429) EamA PF00892.15 gi|110667149|ref|YP_656960.1| - 5.4e-28 97.5 35.7 3.3e-17 62.7 6.8 2.4 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|110667149|ref|YP_656960.1| - 4.6e-05 23.5 11.7 4.6e-05 23.5 8.1 3.4 3 1 0 3 3 3 2 Multidrug resistance efflux transporter Nuc_sug_transp PF04142.10 gi|110667149|ref|YP_656960.1| - 7.6e-05 21.9 1.2 0.15 11.1 0.9 2.4 2 0 0 2 2 2 2 Nucleotide-sugar transporter TPT PF03151.11 gi|110667149|ref|YP_656960.1| - 0.66 9.6 32.6 4.7 6.8 4.4 3.9 2 2 1 3 3 3 0 Triose-phosphate Transporter family UPF0546 PF10639.4 gi|110667149|ref|YP_656960.1| - 6.9 6.5 13.0 0.85 9.4 0.8 2.8 2 1 0 2 2 2 0 Uncharacterised protein family UPF0546 zf-Di19 PF05605.7 gi|110667150|ref|YP_656961.1| - 0.0055 16.8 0.2 0.0093 16.0 0.1 1.5 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding DUF4468 PF14730.1 gi|110667150|ref|YP_656961.1| - 0.031 13.9 0.0 0.037 13.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4468) with TBP-like fold Cys_rich_CPXG PF14255.1 gi|110667150|ref|YP_656961.1| - 0.044 13.6 0.2 0.091 12.5 0.2 1.5 1 0 0 1 1 1 0 Cysteine-rich CPXCG zf-ribbon_3 PF13248.1 gi|110667150|ref|YP_656961.1| - 0.06 12.5 0.7 0.094 11.9 0.1 1.6 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|110667150|ref|YP_656961.1| - 0.17 12.1 1.2 1.7 8.9 0.1 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar TFIIS_C PF01096.13 gi|110667150|ref|YP_656961.1| - 0.2 11.3 1.2 2.5 7.8 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-CHCC PF10276.4 gi|110667150|ref|YP_656961.1| - 0.39 10.6 2.4 0.62 9.9 0.3 2.0 2 0 0 2 2 2 0 Zinc-finger domain HSP20 PF00011.16 gi|110667151|ref|YP_656962.1| - 1.8e-07 30.9 0.0 3.2e-07 30.1 0.0 1.4 1 1 0 1 1 1 1 Hsp20/alpha crystallin family NUDIX PF00293.23 gi|110667152|ref|YP_656963.1| - 2.6e-17 62.7 0.1 3.4e-17 62.3 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain Glyco_transf_21 PF13506.1 gi|110667154|ref|YP_656965.1| - 0.0049 16.1 0.0 0.015 14.5 0.0 1.7 1 1 1 2 2 2 1 Glycosyl transferase family 21 Aldo_ket_red PF00248.16 gi|110667155|ref|YP_656966.1| - 1.6e-35 122.2 0.0 3.4e-25 88.4 0.0 2.2 2 0 0 2 2 2 2 Aldo/keto reductase family DUF148 PF02520.12 gi|110667155|ref|YP_656966.1| - 0.46 10.2 2.2 1.5 8.6 0.5 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF148 NAD_binding_10 PF13460.1 gi|110667156|ref|YP_656967.1| - 9.1e-20 71.4 0.1 1.8e-19 70.4 0.1 1.4 2 0 0 2 2 2 1 NADH(P)-binding Epimerase PF01370.16 gi|110667156|ref|YP_656967.1| - 1.1e-11 44.6 0.1 1.5e-11 44.1 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|110667156|ref|YP_656967.1| - 6.3e-09 34.9 0.0 9.3e-09 34.3 0.0 1.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.13 gi|110667156|ref|YP_656967.1| - 2.4e-08 33.9 0.0 5.8e-08 32.7 0.0 1.7 1 0 0 1 1 1 1 TrkA-N domain ApbA PF02558.11 gi|110667156|ref|YP_656967.1| - 8.7e-06 25.2 0.1 1.6e-05 24.4 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.9 gi|110667156|ref|YP_656967.1| - 0.00019 20.8 0.2 0.00036 19.9 0.2 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.22 gi|110667156|ref|YP_656967.1| - 0.00043 20.6 0.2 0.00086 19.6 0.2 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase RmlD_sub_bind PF04321.12 gi|110667156|ref|YP_656967.1| - 0.0008 18.3 0.1 0.0015 17.4 0.1 1.4 1 0 0 1 1 1 1 RmlD substrate binding domain F420_oxidored PF03807.12 gi|110667156|ref|YP_656967.1| - 0.0038 17.6 0.1 0.009 16.4 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent DAO PF01266.19 gi|110667156|ref|YP_656967.1| - 0.0087 14.9 1.7 0.011 14.6 1.0 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase Rossmann-like PF10727.4 gi|110667156|ref|YP_656967.1| - 0.02 14.5 0.1 0.051 13.2 0.0 1.7 1 0 0 1 1 1 0 Rossmann-like domain NAD_binding_2 PF03446.10 gi|110667156|ref|YP_656967.1| - 0.028 14.2 0.1 0.049 13.4 0.1 1.6 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF3834 PF12916.2 gi|110667157|ref|YP_656968.1| - 0.088 11.8 0.1 0.097 11.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3834) URO-D PF01208.12 gi|110667161|ref|YP_656972.1| - 0.13 11.1 0.0 0.22 10.4 0.0 1.3 1 0 0 1 1 1 0 Uroporphyrinogen decarboxylase (URO-D) T2SF PF00482.18 gi|110667162|ref|YP_656973.1| - 0.014 15.3 0.0 0.088 12.7 0.0 2.6 2 1 0 2 2 2 0 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|110667163|ref|YP_656974.1| - 3.4e-31 108.1 0.1 6e-31 107.3 0.1 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.1 gi|110667163|ref|YP_656974.1| - 0.012 15.6 0.6 0.1 12.5 0.0 2.7 3 0 0 3 3 3 0 AAA ATPase domain AAA_29 PF13555.1 gi|110667163|ref|YP_656974.1| - 0.012 15.0 0.1 0.036 13.6 0.1 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|110667163|ref|YP_656974.1| - 0.036 13.6 0.2 0.094 12.2 0.1 1.7 1 0 0 1 1 1 0 AAA domain zf-RING_6 PF14835.1 gi|110667163|ref|YP_656974.1| - 0.045 13.5 0.0 0.12 12.1 0.0 1.7 1 0 0 1 1 1 0 zf-RING of BARD1-type protein ABC_tran PF00005.22 gi|110667163|ref|YP_656974.1| - 0.1 12.8 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 ABC transporter DUF4400 PF14348.1 gi|110667164|ref|YP_656975.1| - 0.076 12.3 0.4 0.13 11.6 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4400) DUF4407 PF14362.1 gi|110667165|ref|YP_656976.1| - 7.8 5.3 14.0 1.7 7.5 7.3 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) Alpha_GJ PF03229.8 gi|110667167|ref|YP_656978.1| - 0.51 10.6 8.6 1.2 9.4 2.6 2.4 2 1 0 2 2 2 0 Alphavirus glycoprotein J Pacs-1 PF10254.4 gi|110667167|ref|YP_656978.1| - 2.1 6.8 7.9 3.4 6.1 5.5 1.2 1 0 0 1 1 1 0 PACS-1 cytosolic sorting protein DUF4625 PF15418.1 gi|110667168|ref|YP_656979.1| - 0.0018 18.3 0.1 0.017 15.2 0.0 2.2 1 1 0 2 2 2 1 Domain of unknown function (DUF4625) DUF4352 PF11611.3 gi|110667169|ref|YP_656980.1| - 2.5e-08 34.1 0.0 3.3e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4352) Mucin PF01456.12 gi|110667169|ref|YP_656980.1| - 0.021 14.5 11.4 0.039 13.7 7.9 1.5 1 0 0 1 1 1 0 Mucin-like glycoprotein DUF1180 PF06679.7 gi|110667169|ref|YP_656980.1| - 0.21 11.4 2.3 0.31 10.9 1.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) TALPID3 PF15324.1 gi|110667169|ref|YP_656980.1| - 3.5 4.8 6.0 4.3 4.5 4.1 1.1 1 0 0 1 1 1 0 Hedgehog signalling target CARDB PF07705.6 gi|110667170|ref|YP_656981.1| - 1.7e-22 79.3 91.7 1.7e-06 28.0 2.4 15.8 15 1 0 15 15 15 9 CARDB Transglut_C PF00927.17 gi|110667170|ref|YP_656981.1| - 5.9e-11 42.3 7.0 0.0012 18.9 0.0 9.1 9 0 0 9 9 9 3 Transglutaminase family, C-terminal ig like domain SID-1_RNA_chan PF13965.1 gi|110667170|ref|YP_656981.1| - 0.97 7.5 0.1 1.4 6.9 0.1 1.2 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 EF-hand_1 PF00036.27 gi|110667172|ref|YP_656983.1| - 0.0062 15.7 0.3 0.016 14.5 0.0 1.8 2 0 0 2 2 2 1 EF hand EF-hand_5 PF13202.1 gi|110667172|ref|YP_656983.1| - 0.03 13.6 1.1 0.04 13.2 0.1 1.7 2 0 0 2 2 2 0 EF hand EF-hand_6 PF13405.1 gi|110667172|ref|YP_656983.1| - 0.059 13.2 0.2 0.35 10.8 0.1 2.2 1 1 1 2 2 2 0 EF-hand domain DEC-1_N PF04625.8 gi|110667172|ref|YP_656983.1| - 2.4 6.7 9.1 3.9 6.0 6.3 1.3 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region Dockerin_1 PF00404.13 gi|110667172|ref|YP_656983.1| - 7.3 6.4 6.5 12 5.7 0.1 2.9 2 0 0 2 2 2 0 Dockerin type I repeat TrmB PF01978.14 gi|110667174|ref|YP_656985.1| - 0.00018 21.1 0.1 0.31 10.7 0.0 2.5 2 1 1 3 3 3 2 Sugar-specific transcriptional regulator TrmB DUF192 PF02643.10 gi|110667175|ref|YP_656986.1| - 2e-25 88.5 0.0 2.9e-25 88.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 DUF2452 PF10504.4 gi|110667175|ref|YP_656986.1| - 0.045 13.0 0.0 0.93 8.7 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2452) CcdA PF07362.7 gi|110667176|ref|YP_656987.1| - 0.043 13.6 0.1 0.051 13.4 0.1 1.2 1 0 0 1 1 1 0 Post-segregation antitoxin CcdA Ycf54 PF10674.4 gi|110667176|ref|YP_656987.1| - 0.062 13.4 0.1 0.081 13.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2488) Beta_helix PF13229.1 gi|110667177|ref|YP_656988.1| - 0.006 16.3 24.5 0.006 16.3 17.0 9.8 2 1 5 8 8 8 1 Right handed beta helix region HMA PF00403.21 gi|110667177|ref|YP_656988.1| - 0.13 12.4 0.8 21 5.3 0.0 4.0 3 0 0 3 3 3 0 Heavy-metal-associated domain Y_Y_Y PF07495.8 gi|110667178|ref|YP_656989.1| - 0.046 13.4 0.0 0.37 10.5 0.0 2.4 2 0 0 2 2 2 0 Y_Y_Y domain A2M_N PF01835.14 gi|110667179|ref|YP_656990.1| - 1.9e-05 24.8 0.5 0.0096 16.1 0.1 4.2 3 0 0 3 3 3 1 MG2 domain Trypan_PARP PF05887.6 gi|110667179|ref|YP_656990.1| - 0.00035 20.4 13.6 0.00035 20.4 9.4 4.2 5 0 0 5 5 5 1 Procyclic acidic repetitive protein (PARP) LHC PF00556.15 gi|110667179|ref|YP_656990.1| - 0.73 9.7 1.8 1.5 8.6 1.3 1.4 1 0 0 1 1 1 0 Antenna complex alpha/beta subunit Peptidase_S8 PF00082.17 gi|110667180|ref|YP_656991.1| - 3.5e-17 62.4 4.9 2.2e-10 40.1 0.2 2.4 2 0 0 2 2 2 2 Subtilase family EF-hand_8 PF13833.1 gi|110667180|ref|YP_656991.1| - 0.081 12.5 1.7 0.28 10.8 1.2 2.0 1 0 0 1 1 1 0 EF-hand domain pair EF-hand_6 PF13405.1 gi|110667180|ref|YP_656991.1| - 0.14 12.1 1.0 5.1 7.2 0.9 2.9 2 0 0 2 2 2 0 EF-hand domain TrbC PF04956.8 gi|110667182|ref|YP_656993.1| - 0.012 15.5 0.0 0.016 15.2 0.0 1.1 1 0 0 1 1 1 0 TrbC/VIRB2 family DUF4231 PF14015.1 gi|110667182|ref|YP_656993.1| - 0.16 12.0 0.2 0.16 11.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) Pombe_5TM PF09437.5 gi|110667183|ref|YP_656994.1| - 0.024 14.0 3.4 0.034 13.5 2.4 1.2 1 0 0 1 1 1 0 Pombe specific 5TM protein CARDB PF07705.6 gi|110667184|ref|YP_656995.1| - 8e-14 51.5 10.6 7.8e-05 22.6 0.2 5.0 4 1 0 4 4 4 4 CARDB NPCBM_assoc PF10633.4 gi|110667184|ref|YP_656995.1| - 1.6e-13 50.4 22.9 0.00087 19.2 0.5 6.1 5 2 0 5 5 5 4 NPCBM-associated, NEW3 domain of alpha-galactosidase FtsH_ext PF06480.10 gi|110667184|ref|YP_656995.1| - 0.052 13.7 0.2 0.3 11.2 0.2 2.4 1 0 0 1 1 1 0 FtsH Extracellular TRAP_beta PF05753.9 gi|110667184|ref|YP_656995.1| - 0.085 12.0 3.9 3.5 6.7 0.2 3.4 3 0 0 3 3 3 0 Translocon-associated protein beta (TRAPB) HIG_1_N PF04588.8 gi|110667184|ref|YP_656995.1| - 0.15 11.8 1.4 0.31 10.8 1.0 1.5 1 0 0 1 1 1 0 Hypoxia induced protein conserved region MMPL PF03176.10 gi|110667185|ref|YP_656996.1| - 3e-39 134.6 17.2 7.4e-21 74.1 5.7 2.5 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|110667185|ref|YP_656996.1| - 1e-07 31.5 0.1 1e-07 31.5 0.0 3.0 3 1 0 3 3 3 1 Sterol-sensing domain of SREBP cleavage-activation ACR_tran PF00873.14 gi|110667185|ref|YP_656996.1| - 0.00016 19.2 13.9 0.007 13.8 2.1 2.2 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family Patched PF02460.13 gi|110667185|ref|YP_656996.1| - 0.00027 19.0 3.2 0.0018 16.2 0.4 2.7 3 0 0 3 3 3 1 Patched family Usp PF00582.21 gi|110667186|ref|YP_656997.1| - 7.5e-27 94.2 0.3 1.3e-26 93.4 0.2 1.4 1 1 0 1 1 1 1 Universal stress protein family Phosphodiest PF01663.17 gi|110667187|ref|YP_656998.1| - 2.6e-56 191.5 0.0 3e-56 191.3 0.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|110667187|ref|YP_656998.1| - 0.00043 19.5 1.4 0.0022 17.2 0.4 2.4 2 1 0 2 2 2 1 Sulfatase Metalloenzyme PF01676.13 gi|110667187|ref|YP_656998.1| - 0.013 14.9 0.2 0.26 10.6 0.0 2.3 2 0 0 2 2 2 0 Metalloenzyme superfamily SHOCT PF09851.4 gi|110667188|ref|YP_656999.1| - 8.9e-08 31.3 0.0 1.3e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|110667188|ref|YP_656999.1| - 0.0012 18.5 0.0 0.0018 17.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) ODV-E18 PF10717.4 gi|110667188|ref|YP_656999.1| - 0.11 11.8 0.3 0.54 9.7 0.0 2.2 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 DUF3357 PF11837.3 gi|110667188|ref|YP_656999.1| - 0.17 11.7 0.7 0.86 9.4 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3357) Herpes_UL45 PF05473.7 gi|110667188|ref|YP_656999.1| - 2.3 7.6 9.1 2.6 7.4 0.4 2.4 1 1 1 2 2 2 0 UL45 protein API5 PF05918.6 gi|110667189|ref|YP_657000.1| - 0.29 9.6 2.8 0.4 9.1 1.9 1.2 1 0 0 1 1 1 0 Apoptosis inhibitory protein 5 (API5) DNA_pol_B_thumb PF14791.1 gi|110667190|ref|YP_657001.1| - 1.8e-24 85.1 0.0 4.5e-24 83.9 0.0 1.7 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.1 gi|110667190|ref|YP_657001.1| - 1.5e-16 60.3 3.5 3.5e-14 52.7 0.6 3.6 3 0 0 3 3 3 1 Helix-hairpin-helix domain HHH_5 PF14520.1 gi|110667190|ref|YP_657001.1| - 5.6e-15 55.2 4.9 5.7e-11 42.4 0.4 3.1 2 0 0 2 2 2 2 Helix-hairpin-helix domain PHP PF02811.14 gi|110667190|ref|YP_657001.1| - 2.2e-11 43.8 0.0 7.8e-11 42.0 0.0 2.0 1 1 0 1 1 1 1 PHP domain HHH_2 PF12826.2 gi|110667190|ref|YP_657001.1| - 5.6e-05 22.9 2.1 0.19 11.6 0.1 3.7 1 1 2 3 3 3 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|110667190|ref|YP_657001.1| - 0.0015 18.0 0.0 0.0081 15.6 0.0 2.4 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda DNA_pol_B_palm PF14792.1 gi|110667190|ref|YP_657001.1| - 0.0067 16.4 0.1 0.038 14.0 0.0 2.3 2 0 0 2 2 2 1 DNA polymerase beta palm HHH PF00633.18 gi|110667190|ref|YP_657001.1| - 0.017 14.7 0.5 0.16 11.7 0.0 2.9 2 1 1 3 3 3 0 Helix-hairpin-helix motif Amidohydro_2 PF04909.9 gi|110667190|ref|YP_657001.1| - 0.03 13.8 1.6 0.11 12.0 0.2 2.5 2 0 0 2 2 2 0 Amidohydrolase Mut7-C PF01927.11 gi|110667191|ref|YP_657002.1| - 1.1e-48 164.9 0.0 1.6e-48 164.4 0.0 1.3 1 1 0 1 1 1 1 Mut7-C RNAse domain DUF605 PF04652.11 gi|110667192|ref|YP_657003.1| - 2.8 7.2 16.0 3.7 6.8 11.1 1.1 1 0 0 1 1 1 0 Vta1 like Virul_fac_BrkB PF03631.10 gi|110667192|ref|YP_657003.1| - 4.5 6.5 12.7 0.33 10.2 4.9 1.8 1 1 1 2 2 2 0 Virulence factor BrkB MAP65_ASE1 PF03999.7 gi|110667192|ref|YP_657003.1| - 4.8 5.6 9.6 6.2 5.2 6.6 1.0 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) Abi PF02517.11 gi|110667194|ref|YP_657005.1| - 3.6e-07 30.2 1.2 7.1e-07 29.2 0.8 1.8 1 1 0 1 1 1 1 CAAX protease self-immunity SBF PF01758.11 gi|110667195|ref|YP_657006.1| - 3.6e-29 101.4 14.6 3.6e-29 101.4 10.1 1.7 2 0 0 2 2 2 1 Sodium Bile acid symporter family DUF3329 PF11808.3 gi|110667195|ref|YP_657006.1| - 0.7 10.0 2.9 50 4.0 0.1 3.6 3 0 0 3 3 3 0 Domain of unknown function (DUF3329) DUF650 PF04894.7 gi|110667196|ref|YP_657007.1| - 1e-97 326.9 0.0 1.2e-97 326.6 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|110667196|ref|YP_657007.1| - 4.2e-35 119.7 0.0 6.5e-35 119.0 0.0 1.3 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) Pept_tRNA_hydro PF01195.14 gi|110667196|ref|YP_657007.1| - 0.13 11.7 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Peptidyl-tRNA hydrolase TFIIB PF00382.14 gi|110667197|ref|YP_657008.1| - 4e-47 157.9 2.1 2.6e-25 88.0 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|110667197|ref|YP_657008.1| - 0.00024 20.3 0.1 0.00055 19.1 0.1 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_23 PF13384.1 gi|110667197|ref|YP_657008.1| - 0.0081 15.7 0.4 0.62 9.7 0.0 3.4 3 0 0 3 3 3 1 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|110667197|ref|YP_657008.1| - 0.025 13.8 1.0 0.31 10.3 0.0 3.1 2 1 1 3 3 3 0 Sigma-70, region 4 HTH_17 PF12728.2 gi|110667197|ref|YP_657008.1| - 0.062 13.5 0.7 0.89 9.8 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain Cyclin_N PF00134.18 gi|110667197|ref|YP_657008.1| - 0.13 11.8 0.0 0.37 10.3 0.0 1.8 2 0 0 2 2 2 0 Cyclin, N-terminal domain RVT_3 PF13456.1 gi|110667198|ref|YP_657009.1| - 4.6e-22 77.5 0.0 6.6e-22 77.1 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.19 gi|110667198|ref|YP_657009.1| - 5.8e-15 55.8 0.0 9.4e-15 55.1 0.0 1.3 1 0 0 1 1 1 1 RNase H PadR PF03551.9 gi|110667199|ref|YP_657010.1| - 1.9e-17 62.8 0.3 2.7e-17 62.2 0.2 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|110667199|ref|YP_657010.1| - 5.6e-07 29.7 0.1 1.3e-06 28.5 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|110667199|ref|YP_657010.1| - 0.0037 17.0 0.1 0.0065 16.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.6 gi|110667199|ref|YP_657010.1| - 0.0059 16.2 0.1 0.0089 15.6 0.0 1.3 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) DUF4364 PF14277.1 gi|110667199|ref|YP_657010.1| - 0.039 13.5 0.0 0.052 13.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Rio2_N PF09202.6 gi|110667199|ref|YP_657010.1| - 0.058 13.4 0.1 0.1 12.6 0.1 1.4 1 0 0 1 1 1 0 Rio2, N-terminal FUR PF01475.14 gi|110667199|ref|YP_657010.1| - 0.079 12.8 0.0 0.089 12.7 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family Pyrophosphatase PF00719.14 gi|110667200|ref|YP_657011.1| - 7.8e-54 181.3 0.9 9e-54 181.1 0.7 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase Phage_integ_N PF09003.5 gi|110667200|ref|YP_657011.1| - 0.073 12.7 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage lambda integrase, N-terminal domain Rhomboid PF01694.17 gi|110667202|ref|YP_657013.1| - 1.2e-26 93.5 17.8 1.2e-26 93.5 12.3 1.6 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.11 gi|110667202|ref|YP_657013.1| - 1.3e-13 50.5 6.9 1.8e-13 50.1 4.8 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.5 gi|110667202|ref|YP_657013.1| - 0.00044 20.5 0.8 0.00084 19.6 0.3 1.8 1 1 0 1 1 1 1 Eukaryotic integral membrane protein (DUF1751) zf-C2H2_6 PF13912.1 gi|110667202|ref|YP_657013.1| - 3.6 7.6 6.7 5.2 7.1 1.4 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger Zn-ribbon_8 PF09723.5 gi|110667202|ref|YP_657013.1| - 8.2 6.4 7.3 7.8 6.5 1.7 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Endonuclease_5 PF04493.9 gi|110667203|ref|YP_657014.1| - 3e-50 170.4 0.0 4e-50 170.0 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|110667203|ref|YP_657014.1| - 0.049 12.7 0.2 4.2 6.4 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF99 adh_short PF00106.20 gi|110667204|ref|YP_657015.1| - 2.9e-32 111.8 0.6 6.4e-32 110.7 0.1 1.7 2 0 0 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|110667204|ref|YP_657015.1| - 1e-20 74.5 0.0 1.4e-20 74.1 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|110667204|ref|YP_657015.1| - 3.4e-14 52.9 0.0 5.7e-14 52.1 0.0 1.4 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.5 gi|110667204|ref|YP_657015.1| - 1.6e-09 37.3 0.0 2.5e-09 36.7 0.0 1.2 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) NAD_binding_10 PF13460.1 gi|110667204|ref|YP_657015.1| - 8.7e-08 32.3 0.4 3.5e-07 30.3 0.3 2.0 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|110667204|ref|YP_657015.1| - 8.9e-05 22.0 0.0 0.00047 19.6 0.0 2.2 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|110667204|ref|YP_657015.1| - 0.0054 16.4 0.0 0.016 14.9 0.0 1.8 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase RmlD_sub_bind PF04321.12 gi|110667204|ref|YP_657015.1| - 0.0086 14.9 0.1 0.021 13.7 0.0 1.7 2 0 0 2 2 2 1 RmlD substrate binding domain NmrA PF05368.8 gi|110667204|ref|YP_657015.1| - 0.013 14.8 0.0 0.029 13.6 0.0 1.6 2 0 0 2 2 2 0 NmrA-like family TrkA_N PF02254.13 gi|110667204|ref|YP_657015.1| - 0.017 15.0 0.0 0.044 13.7 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain ArsA_ATPase PF02374.10 gi|110667205|ref|YP_657016.1| - 1.2e-80 270.8 0.1 5.9e-53 179.8 0.0 2.8 2 1 0 2 2 2 2 Anion-transporting ATPase CbiA PF01656.18 gi|110667205|ref|YP_657016.1| - 2.1e-11 43.5 0.0 7.3e-11 41.8 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|110667205|ref|YP_657016.1| - 2.4e-06 27.5 0.2 0.0033 17.3 0.0 2.7 3 0 0 3 3 3 2 AAA domain AAA_25 PF13481.1 gi|110667205|ref|YP_657016.1| - 0.00036 20.0 0.5 0.016 14.5 0.0 3.0 3 0 0 3 3 3 1 AAA domain Zeta_toxin PF06414.7 gi|110667205|ref|YP_657016.1| - 0.0015 17.6 0.2 0.021 13.9 0.0 2.2 2 0 0 2 2 2 1 Zeta toxin YhjQ PF06564.7 gi|110667205|ref|YP_657016.1| - 0.0059 15.9 0.0 0.011 15.0 0.0 1.4 1 0 0 1 1 1 1 YhjQ protein AAA_10 PF12846.2 gi|110667205|ref|YP_657016.1| - 0.02 14.3 0.2 0.053 12.9 0.1 1.7 1 1 0 1 1 1 0 AAA-like domain IstB_IS21 PF01695.12 gi|110667205|ref|YP_657016.1| - 0.021 14.2 0.3 0.043 13.2 0.2 1.5 1 1 0 1 1 1 0 IstB-like ATP binding protein Fer4_NifH PF00142.13 gi|110667205|ref|YP_657016.1| - 0.022 13.9 0.1 0.035 13.2 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.17 gi|110667205|ref|YP_657016.1| - 0.031 13.7 5.7 0.27 10.6 0.3 2.5 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain Aminotran_1_2 PF00155.16 gi|110667206|ref|YP_657017.1| - 6.5e-51 173.3 0.0 8e-51 173.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|110667206|ref|YP_657017.1| - 2.5e-05 23.2 3.7 0.00018 20.4 1.2 2.7 2 1 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|110667206|ref|YP_657017.1| - 0.0011 18.1 0.1 0.0016 17.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|110667206|ref|YP_657017.1| - 0.046 12.0 0.1 0.064 11.5 0.1 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme CinA PF02464.12 gi|110667207|ref|YP_657018.1| - 1.1e-55 187.3 0.4 1.3e-55 187.1 0.3 1.0 1 0 0 1 1 1 1 Competence-damaged protein DUF457 PF04307.9 gi|110667208|ref|YP_657019.1| - 4.4e-17 61.8 12.5 7.9e-17 61.0 8.7 1.5 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|110667208|ref|YP_657019.1| - 0.0017 18.0 0.1 0.0024 17.5 0.1 1.4 1 1 0 1 1 1 1 Zinc dependent phospholipase C PHP_C PF13263.1 gi|110667209|ref|YP_657020.1| - 1.3e-12 47.0 0.0 2.6e-12 46.0 0.0 1.6 1 0 0 1 1 1 1 PHP-associated Spt5-NGN PF03439.8 gi|110667210|ref|YP_657021.1| - 2.1e-23 81.8 0.0 3.5e-23 81.1 0.0 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|110667210|ref|YP_657021.1| - 1.3e-07 30.9 1.8 2e-07 30.4 0.1 2.2 3 0 0 3 3 3 1 KOW motif NusG PF02357.14 gi|110667210|ref|YP_657021.1| - 0.0014 18.8 0.0 0.035 14.3 0.0 2.4 1 1 0 1 1 1 1 Transcription termination factor nusG DUF1469 PF07332.6 gi|110667211|ref|YP_657022.1| - 0.067 12.9 3.0 0.081 12.6 2.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Tubulin PF00091.20 gi|110667212|ref|YP_657023.1| - 1.1e-35 123.4 1.0 2.9e-35 122.0 0.7 1.7 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|110667212|ref|YP_657023.1| - 5e-35 119.4 3.4 7.4e-35 118.9 1.0 2.4 2 0 0 2 2 2 1 FtsZ family, C-terminal domain EF-hand_1 PF00036.27 gi|110667212|ref|YP_657023.1| - 0.04 13.2 0.1 3 7.3 0.0 2.9 2 0 0 2 2 2 0 EF hand EF-hand_6 PF13405.1 gi|110667212|ref|YP_657023.1| - 0.16 11.9 0.2 40 4.4 0.0 3.0 3 0 0 3 3 3 0 EF-hand domain tRNA_deacylase PF04414.7 gi|110667213|ref|YP_657024.1| - 4.5e-65 218.7 0.0 7.9e-65 217.9 0.0 1.4 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Shikimate_dh_N PF08501.6 gi|110667214|ref|YP_657025.1| - 2.1e-26 91.8 0.0 4.7e-26 90.6 0.0 1.6 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|110667214|ref|YP_657025.1| - 1e-12 48.3 0.2 2.7e-12 46.9 0.0 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase FAD_binding_2 PF00890.19 gi|110667214|ref|YP_657025.1| - 6.1e-06 25.3 2.7 8.3e-06 24.9 1.9 1.2 1 0 0 1 1 1 1 FAD binding domain F420_oxidored PF03807.12 gi|110667214|ref|YP_657025.1| - 0.00051 20.4 0.2 0.00095 19.5 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|110667214|ref|YP_657025.1| - 0.00089 18.6 0.4 0.0029 17.0 0.1 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain Thi4 PF01946.12 gi|110667214|ref|YP_657025.1| - 0.0014 17.7 0.1 0.0021 17.2 0.1 1.3 1 0 0 1 1 1 1 Thi4 family THF_DHG_CYH_C PF02882.14 gi|110667214|ref|YP_657025.1| - 0.002 17.2 0.0 0.012 14.6 0.0 2.0 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Pyr_redox_2 PF07992.9 gi|110667214|ref|YP_657025.1| - 0.0029 17.5 0.2 0.0047 16.8 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|110667214|ref|YP_657025.1| - 0.0039 16.6 0.4 0.0065 15.9 0.3 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|110667214|ref|YP_657025.1| - 0.012 15.3 0.2 0.025 14.3 0.2 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_7 PF13241.1 gi|110667214|ref|YP_657025.1| - 0.013 15.7 0.0 0.021 15.0 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding GIDA PF01134.17 gi|110667214|ref|YP_657025.1| - 0.015 14.2 6.2 0.021 13.7 4.3 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|110667214|ref|YP_657025.1| - 0.017 14.7 0.9 0.025 14.2 0.6 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|110667214|ref|YP_657025.1| - 0.019 14.0 1.1 0.028 13.4 0.7 1.2 1 0 0 1 1 1 0 FAD binding domain 2-Hacid_dh_C PF02826.14 gi|110667214|ref|YP_657025.1| - 0.028 13.5 0.1 0.042 12.9 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|110667214|ref|YP_657025.1| - 0.045 13.5 0.4 0.075 12.8 0.3 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain HI0933_like PF03486.9 gi|110667214|ref|YP_657025.1| - 0.08 11.4 1.8 0.11 10.9 1.3 1.2 1 0 0 1 1 1 0 HI0933-like protein ThiF PF00899.16 gi|110667214|ref|YP_657025.1| - 0.088 12.6 0.7 0.32 10.8 0.4 1.9 2 0 0 2 2 2 0 ThiF family Pyr_redox PF00070.22 gi|110667214|ref|YP_657025.1| - 0.19 12.1 2.0 0.63 10.4 0.8 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|110667214|ref|YP_657025.1| - 0.19 11.7 4.3 0.43 10.6 3.0 1.6 1 1 0 1 1 1 0 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|110667214|ref|YP_657025.1| - 0.23 10.4 5.8 0.35 9.8 4.1 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase DAO PF01266.19 gi|110667214|ref|YP_657025.1| - 0.26 10.1 5.7 0.39 9.5 3.5 1.5 1 1 0 1 1 1 0 FAD dependent oxidoreductase HHH_5 PF14520.1 gi|110667215|ref|YP_657026.1| - 3.1e-05 24.0 0.2 5.7e-05 23.1 0.2 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|110667215|ref|YP_657026.1| - 0.0023 17.9 0.1 0.0062 16.4 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) Cdd1 PF11731.3 gi|110667215|ref|YP_657026.1| - 0.0052 16.6 0.0 0.009 15.9 0.0 1.4 1 0 0 1 1 1 1 Pathogenicity locus Aminotran_4 PF01063.14 gi|110667216|ref|YP_657027.1| - 6.5e-49 166.4 0.0 8.1e-49 166.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class IV Rieske PF00355.21 gi|110667217|ref|YP_657028.1| - 2.8e-08 33.2 0.1 3.7e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|110667217|ref|YP_657028.1| - 0.011 15.4 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 0 Rieske-like [2Fe-2S] domain GtrA PF04138.9 gi|110667218|ref|YP_657029.1| - 1.1e-14 54.3 4.0 1.6e-14 53.8 2.8 1.3 1 0 0 1 1 1 1 GtrA-like protein Glycos_transf_2 PF00535.21 gi|110667219|ref|YP_657030.1| - 0.0025 17.4 0.0 0.061 13.0 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase family 2 DUF1034 PF06280.7 gi|110667219|ref|YP_657030.1| - 0.051 13.9 3.0 0.27 11.6 0.2 2.5 2 0 0 2 2 2 0 Fn3-like domain (DUF1034) DUF2298 PF10060.4 gi|110667220|ref|YP_657031.1| - 4.3e-142 474.2 19.9 5.7e-142 473.9 13.8 1.1 1 0 0 1 1 1 1 Uncharacterized membrane protein (DUF2298) Ibs_toxin PF13956.1 gi|110667220|ref|YP_657031.1| - 0.019 14.7 0.4 0.11 12.2 0.3 2.5 1 0 0 1 1 1 0 Toxin Ibs, type I toxin-antitoxin system ATP_synth_reg PF14960.1 gi|110667220|ref|YP_657031.1| - 0.15 11.2 1.6 0.46 9.7 0.1 2.4 2 0 0 2 2 2 0 ATP synthase regulation COX14 PF14880.1 gi|110667220|ref|YP_657031.1| - 1.2 8.8 6.6 1.3 8.6 0.5 2.9 3 0 0 3 3 3 0 Cytochrome oxidase c assembly Ribosomal_L44 PF00935.14 gi|110667222|ref|YP_657033.1| - 1.3e-25 89.1 3.9 1.6e-25 88.8 2.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 Terminase_GpA PF05876.7 gi|110667222|ref|YP_657033.1| - 0.002 16.5 0.4 0.0025 16.2 0.3 1.1 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) zf-ribbon_3 PF13248.1 gi|110667222|ref|YP_657033.1| - 0.016 14.3 0.5 3.3 7.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|110667222|ref|YP_657033.1| - 0.019 14.7 2.0 0.055 13.2 1.4 1.7 1 1 0 1 1 1 0 Double zinc ribbon DUF2296 PF10058.4 gi|110667222|ref|YP_657033.1| - 0.026 14.2 1.0 2.1 8.1 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-Mss51 PF13824.1 gi|110667222|ref|YP_657033.1| - 0.036 13.9 0.4 0.067 13.0 0.2 1.5 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Lar_restr_allev PF14354.1 gi|110667222|ref|YP_657033.1| - 0.045 14.0 2.7 1 9.6 1.8 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|110667222|ref|YP_657033.1| - 0.091 12.5 1.4 4.6 7.1 0.1 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|110667222|ref|YP_657033.1| - 0.17 11.4 4.5 2.2 7.8 0.8 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Acetone_carb_G PF08882.6 gi|110667222|ref|YP_657033.1| - 0.18 11.8 0.6 6.1 6.9 0.2 2.1 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit Tnp_zf-ribbon_2 PF13842.1 gi|110667222|ref|YP_657033.1| - 0.21 12.0 2.1 5.4 7.5 0.1 2.4 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon Nudix_N_2 PF14803.1 gi|110667222|ref|YP_657033.1| - 0.26 11.0 3.1 7.9 6.2 0.2 2.5 2 1 0 2 2 2 0 Nudix N-terminal zf-B_box PF00643.19 gi|110667222|ref|YP_657033.1| - 3.3 7.6 9.1 8.9 6.3 0.1 2.1 2 0 0 2 2 2 0 B-box zinc finger Ribosomal_S27e PF01667.12 gi|110667223|ref|YP_657034.1| - 3.2e-20 71.4 0.5 3.8e-20 71.1 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 Zn-ribbon_8 PF09723.5 gi|110667223|ref|YP_657034.1| - 0.0059 16.5 0.3 0.012 15.5 0.2 1.4 1 0 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|110667223|ref|YP_657034.1| - 0.047 12.8 2.6 0.091 11.9 1.8 1.5 1 1 0 1 1 1 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|110667223|ref|YP_657034.1| - 0.15 11.7 1.6 0.42 10.3 1.1 1.7 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit A2L_zn_ribbon PF08792.5 gi|110667223|ref|YP_657034.1| - 0.18 11.2 2.7 1.2 8.6 0.3 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Elf1 PF05129.8 gi|110667223|ref|YP_657034.1| - 0.25 11.0 1.9 0.53 10.0 1.3 1.6 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf-TFIIB PF13453.1 gi|110667223|ref|YP_657034.1| - 0.32 10.2 1.8 13 5.0 0.1 2.3 2 1 0 2 2 2 0 Transcription factor zinc-finger zf-NADH-PPase PF09297.6 gi|110667223|ref|YP_657034.1| - 0.45 10.0 4.2 1.3 8.5 0.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-IS66 PF13005.2 gi|110667223|ref|YP_657034.1| - 0.47 10.4 2.0 13 5.8 0.2 2.3 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF3797 PF12677.2 gi|110667223|ref|YP_657034.1| - 0.49 10.0 5.1 0.67 9.6 1.9 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) TFIIS_C PF01096.13 gi|110667223|ref|YP_657034.1| - 0.58 9.8 3.6 15 5.3 2.5 2.2 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.7 gi|110667223|ref|YP_657034.1| - 0.66 9.3 4.2 0.17 11.2 0.7 1.7 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.1 gi|110667223|ref|YP_657034.1| - 2 8.2 4.2 64 3.3 2.9 2.3 1 1 0 1 1 1 0 zinc-ribbon domain EIF_2_alpha PF07541.7 gi|110667224|ref|YP_657035.1| - 9.6e-28 96.1 0.0 1.7e-27 95.3 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|110667224|ref|YP_657035.1| - 1.8e-15 56.7 1.3 1.1e-14 54.2 0.2 2.2 2 0 0 2 2 2 1 S1 RNA binding domain Collagen_bind PF05737.7 gi|110667224|ref|YP_657035.1| - 0.014 15.5 0.3 0.027 14.6 0.2 1.4 1 0 0 1 1 1 0 Collagen binding domain DUF1804 PF08822.6 gi|110667224|ref|YP_657035.1| - 0.09 12.5 0.7 1 9.0 0.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1804) CsrA PF02599.11 gi|110667224|ref|YP_657035.1| - 0.11 12.2 0.2 0.5 10.1 0.0 2.1 2 0 0 2 2 2 0 Global regulator protein family IFT46_B_C PF12317.3 gi|110667224|ref|YP_657035.1| - 0.3 10.3 2.2 1 8.6 1.2 1.9 1 1 1 2 2 2 0 Intraflagellar transport complex B protein 46 C terminal Nop10p PF04135.7 gi|110667225|ref|YP_657036.1| - 3e-24 84.5 0.6 3.3e-24 84.3 0.4 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family Foamy_BEL PF03274.9 gi|110667225|ref|YP_657036.1| - 0.068 12.3 0.1 0.068 12.3 0.0 1.0 1 0 0 1 1 1 0 Foamy virus BEL 1/2 protein PAC2 PF09754.4 gi|110667226|ref|YP_657037.1| - 4.5e-49 167.2 0.2 5.7e-49 166.9 0.2 1.0 1 0 0 1 1 1 1 PAC2 family PhzC-PhzF PF02567.11 gi|110667228|ref|YP_657039.1| - 1.1e-58 198.6 0.1 1.3e-58 198.4 0.0 1.1 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DAP_epimerase PF01678.14 gi|110667228|ref|YP_657039.1| - 0.00025 20.9 0.2 0.0011 18.8 0.0 2.1 2 1 0 2 2 2 1 Diaminopimelate epimerase Pro_racemase PF05544.6 gi|110667228|ref|YP_657039.1| - 0.0021 16.9 0.0 0.0028 16.5 0.0 1.2 1 0 0 1 1 1 1 Proline racemase Pribosyltran PF00156.22 gi|110667229|ref|YP_657040.1| - 6.8e-21 74.2 0.0 1.1e-20 73.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|110667229|ref|YP_657040.1| - 0.0097 15.1 0.0 0.015 14.5 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Mem_trans PF03547.13 gi|110667230|ref|YP_657041.1| - 1.5e-28 99.1 28.7 2e-14 52.7 4.8 2.0 1 1 1 2 2 2 2 Membrane transport protein PspC PF04024.7 gi|110667230|ref|YP_657041.1| - 0.1 12.0 0.1 0.1 12.0 0.1 3.2 2 1 1 3 3 3 0 PspC domain PNP_UDP_1 PF01048.15 gi|110667231|ref|YP_657042.1| - 5.8e-41 139.9 0.1 6.7e-41 139.7 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily ScpA_ScpB PF02616.9 gi|110667232|ref|YP_657043.1| - 3.6e-22 79.1 0.5 3.8e-14 52.8 0.0 2.7 2 1 0 2 2 2 2 ScpA/B protein Rnk_N PF14760.1 gi|110667232|ref|YP_657043.1| - 0.12 12.5 2.7 3.2 7.8 0.0 2.8 2 0 0 2 2 2 0 Rnk N-terminus DUF2606 PF10794.4 gi|110667232|ref|YP_657043.1| - 0.17 11.2 0.0 0.3 10.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2606) SMC_N PF02463.14 gi|110667233|ref|YP_657044.1| - 1e-56 191.6 22.3 1.8e-56 190.8 15.5 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|110667233|ref|YP_657044.1| - 7.5e-31 106.5 0.0 1.3e-29 102.6 0.0 2.9 2 0 0 2 2 2 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.1 gi|110667233|ref|YP_657044.1| - 8.8e-16 58.8 0.9 8.8e-16 58.8 0.6 7.2 2 2 3 5 5 1 1 AAA domain AAA_21 PF13304.1 gi|110667233|ref|YP_657044.1| - 2e-14 54.2 12.5 6.2e-09 36.2 0.7 4.0 3 1 0 3 3 3 2 AAA domain DUF3584 PF12128.3 gi|110667233|ref|YP_657044.1| - 2.3e-10 38.5 109.8 2.4e-05 21.9 6.4 5.3 2 2 3 5 5 5 5 Protein of unknown function (DUF3584) Reo_sigmaC PF04582.7 gi|110667233|ref|YP_657044.1| - 3e-09 36.4 44.7 0.0061 15.7 2.1 5.9 2 2 3 6 6 6 5 Reovirus sigma C capsid protein AAA_13 PF13166.1 gi|110667233|ref|YP_657044.1| - 4.4e-09 35.4 100.1 0.00051 18.6 20.7 6.8 3 2 3 7 7 7 5 AAA domain IncA PF04156.9 gi|110667233|ref|YP_657044.1| - 4.5e-07 29.6 128.0 0.00074 19.1 9.8 8.7 2 2 7 9 9 8 6 IncA protein DUF4200 PF13863.1 gi|110667233|ref|YP_657044.1| - 1.1e-06 28.5 123.0 0.00024 21.0 8.1 9.5 4 3 5 9 9 9 5 Domain of unknown function (DUF4200) Filament PF00038.16 gi|110667233|ref|YP_657044.1| - 1.2e-06 28.2 110.8 5.7e-05 22.7 28.7 5.4 2 2 2 4 4 3 2 Intermediate filament protein TPR_MLP1_2 PF07926.7 gi|110667233|ref|YP_657044.1| - 2.5e-06 27.2 106.5 0.014 15.1 13.9 7.3 3 3 2 5 5 4 4 TPR/MLP1/MLP2-like protein AAA_29 PF13555.1 gi|110667233|ref|YP_657044.1| - 2.6e-05 23.6 0.0 7.9e-05 22.1 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain APG6 PF04111.7 gi|110667233|ref|YP_657044.1| - 5.9e-05 22.2 120.9 0.0059 15.6 11.9 7.4 2 2 6 8 8 8 5 Autophagy protein Apg6 GAS PF13851.1 gi|110667233|ref|YP_657044.1| - 7.3e-05 22.0 95.9 0.0015 17.7 1.4 6.6 2 2 4 6 6 5 3 Growth-arrest specific micro-tubule binding AAA_15 PF13175.1 gi|110667233|ref|YP_657044.1| - 8.6e-05 21.7 0.0 8.6e-05 21.7 0.0 4.5 3 1 0 3 3 2 1 AAA ATPase domain Seryl_tRNA_N PF02403.17 gi|110667233|ref|YP_657044.1| - 0.0001 22.2 101.3 0.017 15.1 9.0 9.7 3 2 6 10 10 10 5 Seryl-tRNA synthetase N-terminal domain EzrA PF06160.7 gi|110667233|ref|YP_657044.1| - 0.00014 20.2 89.9 0.034 12.3 7.4 4.4 2 1 1 3 3 3 3 Septation ring formation regulator, EzrA Laminin_II PF06009.7 gi|110667233|ref|YP_657044.1| - 0.00023 20.9 76.9 0.044 13.5 2.3 8.5 4 2 4 9 9 8 3 Laminin Domain II CENP-F_leu_zip PF10473.4 gi|110667233|ref|YP_657044.1| - 0.00026 20.8 117.6 0.021 14.7 8.9 8.6 2 2 8 10 10 9 6 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 MscS_porin PF12795.2 gi|110667233|ref|YP_657044.1| - 0.0026 17.1 18.3 0.0026 17.1 12.7 6.0 3 2 3 6 6 5 2 Mechanosensitive ion channel porin domain Myosin_tail_1 PF01576.14 gi|110667233|ref|YP_657044.1| - 0.014 13.2 137.7 0.0058 14.4 42.8 4.5 2 2 0 2 2 2 0 Myosin tail Spc7 PF08317.6 gi|110667233|ref|YP_657044.1| - 0.015 14.0 104.1 0.16 10.6 11.6 7.4 2 2 6 8 8 8 0 Spc7 kinetochore protein DUF4201 PF13870.1 gi|110667233|ref|YP_657044.1| - 0.02 14.3 72.1 0.01 15.2 1.7 7.9 2 2 6 8 8 7 0 Domain of unknown function (DUF4201) BLOC1_2 PF10046.4 gi|110667233|ref|YP_657044.1| - 0.054 13.6 0.2 0.054 13.6 0.1 10.3 3 2 8 11 11 10 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ATG16 PF08614.6 gi|110667233|ref|YP_657044.1| - 0.059 13.1 109.6 0.11 12.3 14.5 8.2 2 2 5 7 7 6 0 Autophagy protein 16 (ATG16) TMF_DNA_bd PF12329.3 gi|110667233|ref|YP_657044.1| - 0.063 13.0 109.1 0.014 15.1 7.9 11.1 4 3 8 13 13 12 0 TATA element modulatory factor 1 DNA binding Mnd1 PF03962.10 gi|110667233|ref|YP_657044.1| - 0.22 11.1 105.9 0.02 14.5 1.3 8.4 2 2 6 8 8 8 0 Mnd1 family ADIP PF11559.3 gi|110667233|ref|YP_657044.1| - 0.23 11.3 98.1 1.3 8.9 0.2 9.1 3 3 5 9 9 9 0 Afadin- and alpha -actinin-Binding Fib_alpha PF08702.5 gi|110667233|ref|YP_657044.1| - 0.45 10.6 61.1 0.019 15.1 4.5 6.8 2 2 3 6 6 6 0 Fibrinogen alpha/beta chain family DUF869 PF05911.6 gi|110667233|ref|YP_657044.1| - 0.56 8.3 95.0 0.2 9.8 10.5 5.1 2 2 3 5 5 5 0 Plant protein of unknown function (DUF869) Syntaxin-6_N PF09177.6 gi|110667233|ref|YP_657044.1| - 0.63 10.4 85.6 0.12 12.7 1.7 9.6 2 2 7 9 9 9 0 Syntaxin 6, N-terminal WEMBL PF05701.6 gi|110667233|ref|YP_657044.1| - 1.2 7.4 119.0 0.16 10.4 13.3 5.2 2 2 2 4 4 3 0 Weak chloroplast movement under blue light Cast PF10174.4 gi|110667233|ref|YP_657044.1| - 1.5 6.7 119.3 0.036 12.1 30.5 3.5 2 2 1 3 3 3 0 RIM-binding protein of the cytomatrix active zone Tropomyosin_1 PF12718.2 gi|110667233|ref|YP_657044.1| - 1.8 8.4 134.3 0.027 14.2 6.2 8.4 2 2 4 7 7 7 0 Tropomyosin like M_domain PF12938.2 gi|110667233|ref|YP_657044.1| - 2.1 8.0 10.0 9.9 5.8 0.1 4.7 2 2 1 4 4 4 0 M domain of GW182 AAA_27 PF13514.1 gi|110667233|ref|YP_657044.1| - 2.6 5.6 117.3 0.34 8.5 25.6 4.8 3 2 1 4 4 4 0 AAA domain ERM PF00769.14 gi|110667233|ref|YP_657044.1| - 4.9 6.6 115.8 0.012 15.1 24.8 5.6 2 2 2 5 5 4 0 Ezrin/radixin/moesin family NPV_P10 PF05531.7 gi|110667233|ref|YP_657044.1| - 8.8 6.6 56.2 1.6 9.0 4.8 10.3 5 4 2 8 8 7 0 Nucleopolyhedrovirus P10 protein Tropomyosin PF00261.15 gi|110667234|ref|YP_657045.1| - 0.018 14.1 1.2 0.018 14.1 0.8 1.8 1 1 1 2 2 2 0 Tropomyosin FlaC_arch PF05377.6 gi|110667234|ref|YP_657045.1| - 0.035 14.0 1.8 0.051 13.4 1.2 1.2 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) DUF4482 PF14818.1 gi|110667234|ref|YP_657045.1| - 0.052 14.1 3.2 0.068 13.8 2.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4482) TMF_DNA_bd PF12329.3 gi|110667234|ref|YP_657045.1| - 0.06 13.1 1.5 0.06 13.1 1.0 1.8 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding IncA PF04156.9 gi|110667234|ref|YP_657045.1| - 0.065 12.8 4.6 0.079 12.5 3.2 1.2 1 0 0 1 1 1 0 IncA protein TBPIP PF07106.8 gi|110667234|ref|YP_657045.1| - 0.068 12.7 1.2 0.087 12.3 0.7 1.3 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) SSP160 PF06933.6 gi|110667234|ref|YP_657045.1| - 0.09 10.7 3.8 0.09 10.7 2.6 1.0 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 HSBP1 PF06825.7 gi|110667234|ref|YP_657045.1| - 0.1 12.2 0.6 0.2 11.2 0.0 1.8 2 0 0 2 2 2 0 Heat shock factor binding protein 1 SYCE1 PF15233.1 gi|110667234|ref|YP_657045.1| - 0.1 12.5 1.9 0.11 12.3 0.8 1.5 1 1 0 1 1 1 0 Synaptonemal complex central element protein 1 Striatin PF08232.7 gi|110667234|ref|YP_657045.1| - 0.15 12.3 3.3 0.22 11.8 2.3 1.3 1 0 0 1 1 1 0 Striatin family BUD22 PF09073.5 gi|110667234|ref|YP_657045.1| - 0.25 10.3 8.5 0.28 10.1 5.9 1.0 1 0 0 1 1 1 0 BUD22 DUF972 PF06156.8 gi|110667234|ref|YP_657045.1| - 0.27 11.5 2.5 0.33 11.3 1.8 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF972) DUF4407 PF14362.1 gi|110667234|ref|YP_657045.1| - 0.38 9.6 4.5 0.44 9.4 3.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Herpes_UL6 PF01763.11 gi|110667234|ref|YP_657045.1| - 0.4 8.7 2.9 0.47 8.5 2.0 1.0 1 0 0 1 1 1 0 Herpesvirus UL6 like Mod_r PF07200.8 gi|110667234|ref|YP_657045.1| - 0.56 10.1 3.8 0.65 9.9 2.6 1.1 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein SlyX PF04102.7 gi|110667234|ref|YP_657045.1| - 0.6 10.5 6.3 1.2 9.6 4.3 1.7 1 1 0 1 1 1 0 SlyX AATF-Che1 PF13339.1 gi|110667234|ref|YP_657045.1| - 0.62 10.2 4.2 0.74 9.9 2.9 1.1 1 0 0 1 1 1 0 Apoptosis antagonizing transcription factor V_ATPase_I PF01496.14 gi|110667234|ref|YP_657045.1| - 0.69 7.6 2.1 0.67 7.7 1.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Fmp27_WPPW PF10359.4 gi|110667234|ref|YP_657045.1| - 0.75 8.1 6.6 0.86 7.9 4.6 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF2457 PF10446.4 gi|110667234|ref|YP_657045.1| - 1 8.0 10.2 0.92 8.1 7.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) SPX PF03105.14 gi|110667234|ref|YP_657045.1| - 1 9.0 6.2 1.2 8.8 4.3 1.1 1 0 0 1 1 1 0 SPX domain CENP-Q PF13094.1 gi|110667234|ref|YP_657045.1| - 1.1 9.2 7.7 1.6 8.7 5.3 1.3 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit Cwf_Cwc_15 PF04889.7 gi|110667234|ref|YP_657045.1| - 1.2 8.7 12.0 1.4 8.5 8.3 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein IFT57 PF10498.4 gi|110667234|ref|YP_657045.1| - 1.9 7.1 6.5 3.2 6.3 4.5 1.4 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 Spc24 PF08286.6 gi|110667234|ref|YP_657045.1| - 2.5 7.8 10.8 26 4.5 7.5 2.0 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 GatB_N PF02934.10 gi|110667235|ref|YP_657046.1| - 7.5e-113 376.1 0.0 1.1e-112 375.6 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|110667235|ref|YP_657046.1| - 7.2e-38 129.6 0.0 1.1e-37 128.9 0.0 1.3 1 0 0 1 1 1 1 GatB domain DUF3018 PF11455.3 gi|110667235|ref|YP_657046.1| - 0.036 13.9 0.1 0.12 12.2 0.1 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3018) DDE_Tnp_1_2 PF13586.1 gi|110667235|ref|YP_657046.1| - 0.1 12.7 0.3 3.5 7.8 0.1 2.4 1 1 1 2 2 2 0 Transposase DDE domain Topoisom_bac PF01131.15 gi|110667236|ref|YP_657047.1| - 5.5e-111 371.2 0.1 8.2e-111 370.6 0.0 1.3 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|110667236|ref|YP_657047.1| - 2.2e-20 72.5 0.0 7.5e-20 70.7 0.0 1.9 2 0 0 2 2 2 1 Toprim domain zf-C4_Topoisom PF01396.14 gi|110667236|ref|YP_657047.1| - 3.2e-20 71.3 3.2 6.8e-13 47.8 0.3 3.0 4 0 0 4 4 3 2 Topoisomerase DNA binding C4 zinc finger HHH_5 PF14520.1 gi|110667236|ref|YP_657047.1| - 2.7e-07 30.6 0.1 9.8e-07 28.8 0.1 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|110667236|ref|YP_657047.1| - 5.1e-05 22.7 0.0 0.00013 21.3 0.0 1.7 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.3 gi|110667236|ref|YP_657047.1| - 0.00066 19.5 0.0 0.0049 16.7 0.0 2.2 2 0 0 2 2 2 1 Pathogenicity locus DUF4332 PF14229.1 gi|110667236|ref|YP_657047.1| - 0.00073 19.5 0.0 0.0023 17.9 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) Toprim_4 PF13662.1 gi|110667236|ref|YP_657047.1| - 0.015 15.2 0.0 0.061 13.3 0.0 2.0 1 0 0 1 1 1 0 Toprim domain IMS_HHH PF11798.3 gi|110667236|ref|YP_657047.1| - 0.024 14.6 0.0 0.082 12.9 0.0 1.9 2 0 0 2 2 2 0 IMS family HHH motif HHH PF00633.18 gi|110667236|ref|YP_657047.1| - 0.031 13.9 0.0 0.094 12.4 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif TfoX_C PF04994.8 gi|110667236|ref|YP_657047.1| - 0.16 11.8 0.0 0.35 10.8 0.0 1.5 1 0 0 1 1 1 0 TfoX C-terminal domain DZR PF12773.2 gi|110667236|ref|YP_657047.1| - 1.8 8.4 5.1 4.1 7.2 0.5 2.8 3 0 0 3 3 3 0 Double zinc ribbon CSD PF00313.17 gi|110667237|ref|YP_657048.1| - 5.1e-20 71.0 0.1 5.5e-20 70.9 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|110667237|ref|YP_657048.1| - 0.0012 18.4 0.2 0.0017 18.0 0.1 1.3 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.6 gi|110667237|ref|YP_657048.1| - 0.022 14.2 2.9 0.033 13.7 2.0 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain CusF_Ec PF11604.3 gi|110667237|ref|YP_657048.1| - 0.12 12.2 0.0 0.17 11.7 0.0 1.4 1 1 0 1 1 1 0 Copper binding periplasmic protein CusF PcrB PF01884.12 gi|110667238|ref|YP_657049.1| - 3.7e-47 160.5 0.2 4.3e-47 160.2 0.1 1.0 1 0 0 1 1 1 1 PcrB family CRF-BP PF05428.6 gi|110667238|ref|YP_657049.1| - 0.06 12.1 0.0 0.094 11.5 0.0 1.2 1 0 0 1 1 1 0 Corticotropin-releasing factor binding protein (CRF-BP) tRNA-synt_2 PF00152.15 gi|110667239|ref|YP_657050.1| - 5.8e-90 301.4 0.0 7.6e-90 301.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|110667239|ref|YP_657050.1| - 6.4e-13 48.3 0.1 1.1e-12 47.6 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|110667239|ref|YP_657050.1| - 0.0056 15.8 0.3 0.053 12.7 0.1 2.4 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) GHMP_kinases_N PF00288.21 gi|110667240|ref|YP_657051.1| - 0.013 15.5 2.2 0.013 15.5 1.6 1.8 2 0 0 2 2 2 0 GHMP kinases N terminal domain DUF137 PF02006.11 gi|110667241|ref|YP_657052.1| - 1e-72 243.2 4.5 1.3e-72 242.9 3.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 Phage_GPD PF05954.6 gi|110667241|ref|YP_657052.1| - 0.0035 16.5 0.0 0.0057 15.8 0.0 1.3 1 0 0 1 1 1 1 Phage late control gene D protein (GPD) Paramyxo_PNT PF13825.1 gi|110667241|ref|YP_657052.1| - 0.064 12.4 0.5 0.31 10.1 0.2 2.0 1 1 1 2 2 2 0 Paramyxovirus structural protein V/P N-terminus GST_N_2 PF13409.1 gi|110667242|ref|YP_657053.1| - 3e-24 84.7 0.2 1.2e-23 82.9 0.0 2.0 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.1 gi|110667242|ref|YP_657053.1| - 7.9e-14 51.2 0.4 1.6e-13 50.3 0.3 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.20 gi|110667242|ref|YP_657053.1| - 9e-09 35.2 0.1 2.3e-08 33.9 0.1 1.7 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.1 gi|110667242|ref|YP_657053.1| - 3.8e-08 33.7 0.0 7.4e-08 32.7 0.0 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.1 gi|110667242|ref|YP_657053.1| - 4.1e-07 30.1 0.0 5e-06 26.6 0.0 2.6 2 1 0 2 2 2 1 Glutathione S-transferase, N-terminal domain HPD PF05044.7 gi|110667242|ref|YP_657053.1| - 0.059 13.0 0.0 0.098 12.3 0.0 1.3 1 0 0 1 1 1 0 Homeo-prospero domain Rhabdo_M2 PF04785.7 gi|110667242|ref|YP_657053.1| - 0.08 11.9 0.1 0.17 10.8 0.0 1.5 1 0 0 1 1 1 0 Rhabdovirus matrix protein M2 Thi4 PF01946.12 gi|110667243|ref|YP_657054.1| - 5.3e-60 202.3 0.9 6.5e-57 192.2 0.6 2.0 1 1 0 1 1 1 1 Thi4 family DAO PF01266.19 gi|110667243|ref|YP_657054.1| - 1.5e-10 40.5 1.0 5.7e-08 32.0 0.2 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|110667243|ref|YP_657054.1| - 5.5e-10 39.1 0.1 1.3e-09 37.9 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|110667243|ref|YP_657054.1| - 6.8e-10 38.5 0.4 1e-09 37.9 0.1 1.4 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.19 gi|110667243|ref|YP_657054.1| - 3e-09 36.2 2.6 4.7e-08 32.3 1.8 2.2 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|110667243|ref|YP_657054.1| - 1.1e-07 31.3 0.1 1.5e-07 30.8 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|110667243|ref|YP_657054.1| - 4.8e-07 28.5 0.1 6.9e-07 28.0 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|110667243|ref|YP_657054.1| - 2.4e-06 27.5 0.2 3.8e-06 26.9 0.1 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|110667243|ref|YP_657054.1| - 2.9e-06 27.5 0.4 9.2e-06 25.9 0.3 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|110667243|ref|YP_657054.1| - 1.7e-05 24.6 0.1 4e-05 23.4 0.1 1.6 1 0 0 1 1 1 1 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|110667243|ref|YP_657054.1| - 7.4e-05 21.5 0.8 0.0072 14.9 0.1 2.5 2 1 0 2 2 2 1 Tryptophan halogenase Pyr_redox_3 PF13738.1 gi|110667243|ref|YP_657054.1| - 0.00015 21.8 0.3 0.00035 20.6 0.2 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|110667243|ref|YP_657054.1| - 0.0002 20.5 0.0 0.00032 19.9 0.0 1.3 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.7 gi|110667243|ref|YP_657054.1| - 0.0012 17.8 0.4 0.021 13.7 0.1 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_7 PF13241.1 gi|110667243|ref|YP_657054.1| - 0.0029 17.8 0.0 0.0054 16.9 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding GIDA PF01134.17 gi|110667243|ref|YP_657054.1| - 0.014 14.2 0.2 0.021 13.6 0.1 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A TrkA_N PF02254.13 gi|110667243|ref|YP_657054.1| - 0.016 15.2 0.5 0.036 14.0 0.1 1.8 2 0 0 2 2 2 0 TrkA-N domain UDPG_MGDP_dh_N PF03721.9 gi|110667243|ref|YP_657054.1| - 0.032 13.5 0.1 0.055 12.8 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Aldolase_2 PF10120.4 gi|110667244|ref|YP_657055.1| - 5.7e-52 175.5 0.0 7.9e-52 175.0 0.0 1.2 1 0 0 1 1 1 1 Putative aldolase HTH_3 PF01381.17 gi|110667244|ref|YP_657055.1| - 5.2e-07 29.3 0.1 1.5e-06 27.9 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|110667244|ref|YP_657055.1| - 6.8e-06 26.1 1.8 2e-05 24.6 0.0 2.4 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|110667244|ref|YP_657055.1| - 1.2e-05 24.5 2.2 0.00068 18.9 0.0 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_37 PF13744.1 gi|110667244|ref|YP_657055.1| - 2e-05 24.2 0.0 5.3e-05 22.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|110667244|ref|YP_657055.1| - 0.00023 20.6 0.1 0.0027 17.3 0.0 2.6 3 0 0 3 3 3 1 Homeodomain-like domain HTH_24 PF13412.1 gi|110667244|ref|YP_657055.1| - 0.00035 19.9 2.0 0.0016 17.7 0.0 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_26 PF13443.1 gi|110667244|ref|YP_657055.1| - 0.00075 19.6 0.0 0.0016 18.6 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_19 PF12844.2 gi|110667244|ref|YP_657055.1| - 0.0015 18.5 0.0 0.0035 17.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|110667244|ref|YP_657055.1| - 0.0044 16.5 0.0 0.011 15.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|110667244|ref|YP_657055.1| - 0.0049 16.5 0.0 0.0049 16.5 0.0 2.4 3 0 0 3 3 2 1 MarR family Sigma70_r4_2 PF08281.7 gi|110667244|ref|YP_657055.1| - 0.023 14.1 2.1 0.24 10.8 0.0 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 Cro PF09048.5 gi|110667244|ref|YP_657055.1| - 0.025 14.2 0.0 0.06 12.9 0.0 1.6 1 0 0 1 1 1 0 Cro HTH_5 PF01022.15 gi|110667244|ref|YP_657055.1| - 0.034 13.8 0.0 0.08 12.6 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family P22_Cro PF14549.1 gi|110667244|ref|YP_657055.1| - 0.035 13.8 0.0 0.074 12.7 0.0 1.5 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro KorB PF08535.5 gi|110667244|ref|YP_657055.1| - 0.037 14.1 0.0 0.28 11.3 0.0 2.2 2 0 0 2 2 2 0 KorB domain HTH_10 PF04967.7 gi|110667244|ref|YP_657055.1| - 0.083 12.4 0.4 0.43 10.2 0.0 2.3 3 0 0 3 3 3 0 HTH DNA binding domain HTH_1 PF00126.22 gi|110667244|ref|YP_657055.1| - 0.091 12.5 0.1 0.31 10.7 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Crp_2 PF13545.1 gi|110667244|ref|YP_657055.1| - 0.098 12.4 0.0 0.53 10.1 0.0 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DUF2481 PF10654.4 gi|110667244|ref|YP_657055.1| - 0.12 12.1 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) dUTPase PF00692.14 gi|110667245|ref|YP_657056.1| - 6.6e-16 57.9 0.0 1.1e-15 57.2 0.0 1.3 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|110667245|ref|YP_657056.1| - 1.2e-15 56.8 0.1 5.4e-10 38.2 0.0 2.1 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) PTH2 PF01981.11 gi|110667246|ref|YP_657057.1| - 2.5e-41 140.0 0.1 2.7e-41 139.8 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 HATPase_c PF02518.21 gi|110667247|ref|YP_657058.1| - 1.3e-20 73.2 0.1 2.8e-20 72.0 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|110667247|ref|YP_657058.1| - 4.8e-12 46.1 0.0 1e-11 45.0 0.0 1.5 1 0 0 1 1 1 1 PAS domain HisKA PF00512.20 gi|110667247|ref|YP_657058.1| - 3.3e-11 43.0 2.5 1.3e-09 37.8 0.7 3.1 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|110667247|ref|YP_657058.1| - 1.9e-07 30.8 0.3 6.9e-07 29.0 0.0 2.1 3 0 0 3 3 3 1 PAS fold HATPase_c_3 PF13589.1 gi|110667247|ref|YP_657058.1| - 0.00038 20.1 0.0 0.00093 18.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|110667247|ref|YP_657058.1| - 0.00052 20.0 0.0 0.0012 18.8 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|110667247|ref|YP_657058.1| - 0.0011 18.7 0.1 0.0074 16.1 0.0 2.3 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|110667247|ref|YP_657058.1| - 0.0066 16.2 0.2 0.022 14.5 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_4 PF08448.5 gi|110667247|ref|YP_657058.1| - 0.018 15.0 0.1 0.034 14.1 0.1 1.5 1 0 0 1 1 1 0 PAS fold PMC2NT PF08066.7 gi|110667247|ref|YP_657058.1| - 0.02 15.1 1.2 2 8.7 0.1 3.4 2 1 1 3 3 3 0 PMC2NT (NUC016) domain TruD PF01142.13 gi|110667248|ref|YP_657059.1| - 6.9e-89 298.1 0.0 3e-53 180.8 0.0 2.1 1 1 1 2 2 2 2 tRNA pseudouridine synthase D (TruD) DUF1770 PF08589.5 gi|110667248|ref|YP_657059.1| - 0.073 13.6 0.1 0.39 11.3 0.0 2.2 2 0 0 2 2 2 0 Fungal protein of unknown function (DUF1770) DUF2103 PF09876.4 gi|110667249|ref|YP_657060.1| - 5.5e-46 154.5 0.1 8.9e-46 153.8 0.1 1.3 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) zf-FPG_IleRS PF06827.9 gi|110667249|ref|YP_657060.1| - 1.4 8.6 4.1 2.3 7.9 2.1 2.0 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Ribosomal_L37ae PF01780.14 gi|110667250|ref|YP_657061.1| - 2.6e-23 81.6 0.6 3.1e-23 81.4 0.4 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family DNA_RNApol_7kD PF03604.8 gi|110667251|ref|YP_657062.1| - 2.8e-10 39.4 4.7 3.3e-10 39.2 3.3 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit A2L_zn_ribbon PF08792.5 gi|110667251|ref|YP_657062.1| - 0.00021 20.6 1.4 0.0003 20.1 1.0 1.2 1 0 0 1 1 1 1 A2L zinc ribbon domain DUF329 PF03884.9 gi|110667251|ref|YP_657062.1| - 0.00066 19.1 3.9 0.013 15.0 1.0 1.9 1 1 1 2 2 2 2 Domain of unknown function (DUF329) HypA PF01155.14 gi|110667251|ref|YP_657062.1| - 0.00084 19.0 0.4 0.00084 19.0 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|110667251|ref|YP_657062.1| - 0.0044 16.3 2.1 0.006 15.8 1.5 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|110667251|ref|YP_657062.1| - 0.0048 16.6 4.4 0.16 11.7 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|110667251|ref|YP_657062.1| - 0.0085 15.2 2.4 0.098 11.8 0.2 2.0 1 1 1 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|110667251|ref|YP_657062.1| - 0.017 14.9 0.6 0.033 13.9 0.4 1.5 1 1 0 1 1 1 0 Double zinc ribbon DUF951 PF06107.6 gi|110667251|ref|YP_657062.1| - 0.026 14.0 1.6 2.4 7.7 0.1 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) zinc-ribbons_6 PF07191.7 gi|110667251|ref|YP_657062.1| - 0.028 14.1 0.2 0.035 13.8 0.1 1.1 1 0 0 1 1 1 0 zinc-ribbons Cys_rich_CPXG PF14255.1 gi|110667251|ref|YP_657062.1| - 0.035 13.9 0.5 0.15 11.8 0.0 1.9 2 0 0 2 2 2 0 Cysteine-rich CPXCG Prok-RING_4 PF14447.1 gi|110667251|ref|YP_657062.1| - 0.036 13.6 0.4 0.043 13.3 0.3 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 OrfB_Zn_ribbon PF07282.6 gi|110667251|ref|YP_657062.1| - 0.042 13.5 1.1 0.05 13.2 0.8 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Prok-RING_1 PF14446.1 gi|110667251|ref|YP_657062.1| - 0.042 13.5 1.5 0.29 10.8 1.2 1.8 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 C1_1 PF00130.17 gi|110667251|ref|YP_657062.1| - 0.053 13.2 0.6 0.066 12.9 0.4 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Lar_restr_allev PF14354.1 gi|110667251|ref|YP_657062.1| - 0.057 13.7 1.9 0.063 13.5 0.1 1.8 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-AN1 PF01428.11 gi|110667251|ref|YP_657062.1| - 0.068 13.0 1.4 0.16 11.8 1.0 1.6 1 1 1 2 2 2 0 AN1-like Zinc finger zf-Di19 PF05605.7 gi|110667251|ref|YP_657062.1| - 0.078 13.1 0.4 1.1 9.3 0.0 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-HIT PF04438.11 gi|110667251|ref|YP_657062.1| - 0.091 12.4 3.3 0.81 9.3 0.5 2.1 2 0 0 2 2 2 0 HIT zinc finger zinc_ribbon_2 PF13240.1 gi|110667251|ref|YP_657062.1| - 0.14 11.6 4.4 1.6 8.2 3.1 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|110667251|ref|YP_657062.1| - 0.15 12.0 5.1 1.1 9.3 3.5 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf-C2HC5 PF06221.8 gi|110667251|ref|YP_657062.1| - 0.15 11.8 0.7 0.73 9.6 0.5 1.9 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-RING_3 PF14369.1 gi|110667251|ref|YP_657062.1| - 0.16 11.9 1.3 0.26 11.3 0.9 1.4 1 0 0 1 1 1 0 zinc-finger UPF0547 PF10571.4 gi|110667251|ref|YP_657062.1| - 0.21 11.3 1.5 0.21 11.3 1.0 2.3 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 TFIIS_C PF01096.13 gi|110667251|ref|YP_657062.1| - 0.22 11.1 1.1 16 5.2 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Desulfoferrod_N PF06397.7 gi|110667251|ref|YP_657062.1| - 0.3 10.5 2.2 4.1 6.8 0.2 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain Sgf11 PF08209.6 gi|110667251|ref|YP_657062.1| - 0.38 10.1 3.7 1.2 8.5 0.3 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-C2H2_4 PF13894.1 gi|110667251|ref|YP_657062.1| - 0.39 11.1 1.8 6.7 7.2 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zf-Sec23_Sec24 PF04810.10 gi|110667251|ref|YP_657062.1| - 0.45 10.1 0.1 0.45 10.1 0.1 2.0 1 1 0 2 2 2 0 Sec23/Sec24 zinc finger zinc_ribbon_4 PF13717.1 gi|110667251|ref|YP_657062.1| - 1.4 8.6 6.2 77 3.1 4.3 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|110667251|ref|YP_657062.1| - 1.6 8.3 6.3 90 2.7 4.4 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Mu-like_Com PF10122.4 gi|110667251|ref|YP_657062.1| - 3.4 6.7 6.6 5.2 6.1 0.9 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com Zn_Tnp_IS1 PF03811.8 gi|110667251|ref|YP_657062.1| - 6.6 6.3 6.7 6.3 6.3 0.2 2.1 2 0 0 2 2 2 0 InsA N-terminal domain zf-C2HC_2 PF13913.1 gi|110667251|ref|YP_657062.1| - 7.6 6.3 6.6 11 5.8 0.5 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Pcc1 PF09341.5 gi|110667252|ref|YP_657063.1| - 3.7e-15 55.7 0.2 5.5e-15 55.1 0.1 1.3 1 0 0 1 1 1 1 Transcription factor Pcc1 Prefoldin_2 PF01920.15 gi|110667253|ref|YP_657064.1| - 4.7e-23 80.9 18.1 5.3e-23 80.8 12.6 1.0 1 0 0 1 1 1 1 Prefoldin subunit ALIX_LYPXL_bnd PF13949.1 gi|110667253|ref|YP_657064.1| - 0.00094 18.2 8.6 0.0012 17.9 6.0 1.1 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV Prefoldin PF02996.12 gi|110667253|ref|YP_657064.1| - 0.0039 16.8 13.6 0.29 10.8 9.4 2.3 1 1 0 1 1 1 1 Prefoldin subunit CobN-Mg_chel PF02514.11 gi|110667253|ref|YP_657064.1| - 0.011 13.2 2.3 0.013 12.9 1.6 1.0 1 0 0 1 1 1 0 CobN/Magnesium Chelatase DUF3610 PF12272.3 gi|110667253|ref|YP_657064.1| - 0.017 14.8 1.2 0.037 13.6 0.3 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3610) Laminin_I PF06008.9 gi|110667253|ref|YP_657064.1| - 0.024 13.9 15.3 0.21 10.8 1.1 2.1 1 1 0 2 2 2 0 Laminin Domain I CK2S PF15011.1 gi|110667253|ref|YP_657064.1| - 0.027 14.2 5.1 0.09 12.5 3.5 1.8 1 1 0 1 1 1 0 Casein Kinase 2 substrate eIF3_subunit PF08597.5 gi|110667253|ref|YP_657064.1| - 0.03 13.8 6.5 0.039 13.5 4.5 1.1 1 0 0 1 1 1 0 Translation initiation factor eIF3 subunit SseC PF04888.7 gi|110667253|ref|YP_657064.1| - 0.033 13.5 0.2 0.033 13.5 0.2 2.1 2 0 0 2 2 2 0 Secretion system effector C (SseC) like family DUF4164 PF13747.1 gi|110667253|ref|YP_657064.1| - 0.04 14.0 15.1 0.24 11.5 1.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) bZIP_1 PF00170.16 gi|110667253|ref|YP_657064.1| - 0.046 13.6 1.3 0.046 13.6 0.9 2.2 2 0 0 2 2 2 0 bZIP transcription factor NPV_P10 PF05531.7 gi|110667253|ref|YP_657064.1| - 0.057 13.6 9.8 0.12 12.5 2.0 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Radical_SAM_N PF08497.5 gi|110667253|ref|YP_657064.1| - 0.057 12.3 1.4 0.069 12.0 0.9 1.1 1 0 0 1 1 1 0 Radical SAM N-terminal CDC37_N PF03234.9 gi|110667253|ref|YP_657064.1| - 0.11 12.8 9.2 0.13 12.5 6.4 1.1 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding PilJ PF13675.1 gi|110667253|ref|YP_657064.1| - 0.14 12.4 9.4 2.4 8.4 6.6 2.3 1 1 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF4407 PF14362.1 gi|110667253|ref|YP_657064.1| - 0.15 11.0 10.5 0.39 9.6 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) FlgN PF05130.7 gi|110667253|ref|YP_657064.1| - 0.15 12.3 10.2 0.23 11.6 7.0 1.3 1 0 0 1 1 1 0 FlgN protein Acyl-CoA_dh_C PF12806.2 gi|110667253|ref|YP_657064.1| - 0.15 11.8 1.7 7.5 6.4 0.6 2.2 2 0 0 2 2 2 0 Acetyl-CoA dehydrogenase C-terminal like Sigma70_ner PF04546.8 gi|110667253|ref|YP_657064.1| - 0.15 11.6 11.6 0.053 13.1 2.2 2.0 1 1 1 2 2 2 0 Sigma-70, non-essential region Phage_GPO PF05929.6 gi|110667253|ref|YP_657064.1| - 0.2 10.8 9.3 0.55 9.4 6.5 1.5 1 1 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase COG2 PF06148.6 gi|110667253|ref|YP_657064.1| - 0.21 11.4 12.5 0.15 11.9 1.5 2.0 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF4404 PF14357.1 gi|110667253|ref|YP_657064.1| - 0.22 11.9 9.2 0.56 10.6 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) WXG100 PF06013.7 gi|110667253|ref|YP_657064.1| - 0.25 11.3 10.8 3.2 7.8 1.1 2.7 2 1 0 2 2 2 0 Proteins of 100 residues with WXG DUF3584 PF12128.3 gi|110667253|ref|YP_657064.1| - 0.3 8.3 11.0 0.4 7.9 7.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF1664 PF07889.7 gi|110667253|ref|YP_657064.1| - 0.32 10.8 9.3 0.14 11.9 1.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) TraF_2 PF13729.1 gi|110667253|ref|YP_657064.1| - 0.4 9.4 9.3 0.078 11.7 0.4 2.0 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein DUF4140 PF13600.1 gi|110667253|ref|YP_657064.1| - 0.46 10.9 15.6 0.14 12.6 1.8 2.3 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF972 PF06156.8 gi|110667253|ref|YP_657064.1| - 0.47 10.8 8.5 0.55 10.5 0.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF972) FH2 PF02181.18 gi|110667253|ref|YP_657064.1| - 0.47 9.2 8.4 0.58 8.9 5.8 1.0 1 0 0 1 1 1 0 Formin Homology 2 Domain Syntaxin PF00804.20 gi|110667253|ref|YP_657064.1| - 0.47 10.6 5.9 1.4 9.0 0.5 2.2 2 0 0 2 2 2 0 Syntaxin Hemerythrin PF01814.18 gi|110667253|ref|YP_657064.1| - 0.62 10.2 8.7 3.9 7.6 6.0 1.9 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain PP-binding_2 PF14573.1 gi|110667253|ref|YP_657064.1| - 0.64 10.0 4.6 10 6.2 0.1 2.3 2 0 0 2 2 2 0 Acyl-carrier TRCF PF03461.10 gi|110667253|ref|YP_657064.1| - 0.68 9.9 4.2 2.9 7.9 0.2 2.8 1 1 2 3 3 3 0 TRCF domain TPR_MLP1_2 PF07926.7 gi|110667253|ref|YP_657064.1| - 0.68 9.6 17.1 2.2 8.0 1.2 2.2 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Sec8_exocyst PF04048.9 gi|110667253|ref|YP_657064.1| - 0.72 9.4 6.4 0.29 10.7 0.8 2.0 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain Tektin PF03148.9 gi|110667253|ref|YP_657064.1| - 0.72 8.3 13.7 1 7.8 9.5 1.2 1 0 0 1 1 1 0 Tektin family CENP-F_leu_zip PF10473.4 gi|110667253|ref|YP_657064.1| - 0.74 9.6 18.4 0.28 11.0 3.6 2.1 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Cortex-I_coil PF09304.5 gi|110667253|ref|YP_657064.1| - 0.79 9.7 16.6 0.54 10.3 4.1 2.0 1 1 1 2 2 2 0 Cortexillin I, coiled coil Snapin_Pallidin PF14712.1 gi|110667253|ref|YP_657064.1| - 0.79 10.0 12.7 0.3 11.3 1.7 2.2 2 0 0 2 2 2 0 Snapin/Pallidin AAA_27 PF13514.1 gi|110667253|ref|YP_657064.1| - 0.84 7.2 12.8 1.1 6.8 8.8 1.1 1 0 0 1 1 1 0 AAA domain DASH_Dam1 PF08653.5 gi|110667253|ref|YP_657064.1| - 0.9 9.3 5.7 3 7.6 0.3 2.8 2 2 0 2 2 2 0 DASH complex subunit Dam1 Fzo_mitofusin PF04799.8 gi|110667253|ref|YP_657064.1| - 0.92 8.8 9.5 1.7 8.0 1.3 2.1 1 1 1 2 2 2 0 fzo-like conserved region Fijivirus_P9-2 PF06837.6 gi|110667253|ref|YP_657064.1| - 0.97 8.5 3.7 2 7.5 0.7 2.0 1 1 1 2 2 2 0 Fijivirus P9-2 protein PspA_IM30 PF04012.7 gi|110667253|ref|YP_657064.1| - 1 8.6 17.7 5.4 6.3 5.9 1.9 1 1 0 1 1 1 0 PspA/IM30 family Phasin PF05597.6 gi|110667253|ref|YP_657064.1| - 1.1 9.0 10.1 1.3 8.7 5.8 1.9 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) OPA3 PF07047.7 gi|110667253|ref|YP_657064.1| - 1.3 8.8 6.8 0.93 9.2 3.6 1.4 1 1 1 2 2 2 0 Optic atrophy 3 protein (OPA3) Spc24 PF08286.6 gi|110667253|ref|YP_657064.1| - 1.3 8.7 16.8 0.19 11.4 1.9 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF4200 PF13863.1 gi|110667253|ref|YP_657064.1| - 1.3 8.9 17.0 0.79 9.6 3.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) FlaC_arch PF05377.6 gi|110667253|ref|YP_657064.1| - 1.4 8.8 10.0 0.094 12.6 1.8 2.4 2 1 1 3 3 2 0 Flagella accessory protein C (FlaC) DUF3450 PF11932.3 gi|110667253|ref|YP_657064.1| - 1.6 7.9 17.7 2.3 7.4 4.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) PCEMA1 PF07418.6 gi|110667253|ref|YP_657064.1| - 1.7 7.9 7.6 2 7.7 5.3 1.0 1 0 0 1 1 1 0 Acidic phosphoprotein precursor PCEMA1 Med10 PF09748.4 gi|110667253|ref|YP_657064.1| - 1.9 8.2 4.8 23 4.8 3.3 2.0 1 1 0 1 1 1 0 Transcription factor subunit Med10 of Mediator complex ERp29 PF07749.7 gi|110667253|ref|YP_657064.1| - 2.1 9.0 5.5 3.4 8.3 3.0 1.8 1 1 1 2 2 2 0 Endoplasmic reticulum protein ERp29, C-terminal domain IncA PF04156.9 gi|110667253|ref|YP_657064.1| - 2.2 7.8 22.0 7.2 6.1 15.3 1.6 1 1 0 1 1 1 0 IncA protein Baculo_PEP_C PF04513.7 gi|110667253|ref|YP_657064.1| - 2.3 8.0 8.2 8.3 6.2 5.7 1.8 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus V_ATPase_I PF01496.14 gi|110667253|ref|YP_657064.1| - 2.4 5.9 12.5 10 3.8 8.8 1.7 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Syntaxin-6_N PF09177.6 gi|110667253|ref|YP_657064.1| - 2.4 8.6 9.7 60 4.1 6.6 2.4 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Mnd1 PF03962.10 gi|110667253|ref|YP_657064.1| - 2.5 7.7 14.1 1.3 8.6 1.2 2.0 1 1 1 2 2 2 0 Mnd1 family DASH_Dad2 PF08654.5 gi|110667253|ref|YP_657064.1| - 2.7 8.0 11.7 0.82 9.7 0.8 2.6 1 1 1 3 3 3 0 DASH complex subunit Dad2 Lebercilin PF15619.1 gi|110667253|ref|YP_657064.1| - 2.8 7.2 14.9 6.3 6.1 10.3 1.5 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease CorA PF01544.13 gi|110667253|ref|YP_657064.1| - 2.9 6.8 10.3 13 4.7 7.3 1.8 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein HSP70 PF00012.15 gi|110667253|ref|YP_657064.1| - 3.9 5.2 9.5 4.8 4.9 6.6 1.0 1 0 0 1 1 1 0 Hsp70 protein Seryl_tRNA_N PF02403.17 gi|110667253|ref|YP_657064.1| - 4 7.4 13.7 3.1 7.8 1.0 2.2 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain AMP-binding_C_2 PF14535.1 gi|110667253|ref|YP_657064.1| - 4.2 7.4 5.9 1.3 9.0 1.2 2.0 1 1 1 2 2 2 0 AMP-binding enzyme C-terminal domain APG6 PF04111.7 gi|110667253|ref|YP_657064.1| - 4.5 6.2 18.4 7.2 5.5 12.8 1.3 1 1 0 1 1 1 0 Autophagy protein Apg6 ERM PF00769.14 gi|110667253|ref|YP_657064.1| - 4.8 6.6 16.9 7.5 6.0 11.7 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Prominin PF05478.6 gi|110667253|ref|YP_657064.1| - 5.1 4.4 6.8 12 3.2 4.8 1.4 1 1 0 1 1 1 0 Prominin Fib_alpha PF08702.5 gi|110667253|ref|YP_657064.1| - 5.3 7.1 8.6 2 8.5 0.8 2.0 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF2408 PF10303.4 gi|110667253|ref|YP_657064.1| - 5.5 7.1 8.7 25 4.9 6.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) DUF4559 PF15112.1 gi|110667253|ref|YP_657064.1| - 5.7 6.0 9.4 7.7 5.5 6.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) DUF964 PF06133.6 gi|110667253|ref|YP_657064.1| - 5.8 6.9 17.6 0.99 9.4 4.3 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF964) Laminin_II PF06009.7 gi|110667253|ref|YP_657064.1| - 5.8 6.6 9.6 59 3.4 6.7 2.0 1 1 0 1 1 1 0 Laminin Domain II BLOC1_2 PF10046.4 gi|110667253|ref|YP_657064.1| - 6.4 6.9 11.4 53 4.0 2.4 2.3 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Atg14 PF10186.4 gi|110667253|ref|YP_657064.1| - 7 5.5 11.2 22 3.8 7.7 1.6 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 bZIP_Maf PF03131.12 gi|110667253|ref|YP_657064.1| - 7.7 6.8 11.4 3.8 7.8 1.7 2.2 2 0 0 2 2 2 0 bZIP Maf transcription factor DUF904 PF06005.7 gi|110667253|ref|YP_657064.1| - 7.8 6.8 16.3 0.51 10.6 2.8 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF904) Bap31 PF05529.7 gi|110667253|ref|YP_657064.1| - 7.8 5.8 9.1 12 5.3 6.3 1.3 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like DUF948 PF06103.6 gi|110667253|ref|YP_657064.1| - 7.9 6.4 7.5 4.4 7.2 0.6 2.3 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Lectin_N PF03954.9 gi|110667253|ref|YP_657064.1| - 8.1 5.8 6.9 31 3.9 4.8 1.8 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain Syntaxin_2 PF14523.1 gi|110667253|ref|YP_657064.1| - 8.8 6.4 8.5 3.2 7.8 1.3 2.1 1 1 0 1 1 1 0 Syntaxin-like protein GAS PF13851.1 gi|110667253|ref|YP_657064.1| - 9.2 5.4 17.6 65 2.6 12.1 1.8 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Sec34 PF04136.10 gi|110667253|ref|YP_657064.1| - 9.8 5.8 11.6 6.5 6.4 2.8 2.0 1 1 1 2 2 2 0 Sec34-like family DUF3194 PF11419.3 gi|110667254|ref|YP_657065.1| - 0.0013 18.9 1.3 0.0018 18.4 0.9 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3194) DUF2070 PF09843.4 gi|110667255|ref|YP_657066.1| - 7.3e-55 185.2 0.6 1.3e-54 184.4 0.1 1.6 2 0 0 2 2 2 1 Predicted membrane protein (DUF2070) GATase PF00117.23 gi|110667256|ref|YP_657067.1| - 3e-36 124.7 0.0 3.3e-36 124.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|110667256|ref|YP_657067.1| - 9.8e-16 57.8 2.3 7.4e-12 45.1 0.2 3.0 2 1 0 2 2 2 2 Peptidase C26 GATase_3 PF07685.9 gi|110667256|ref|YP_657067.1| - 0.033 13.7 0.1 0.063 12.8 0.0 1.6 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain DUF968 PF06147.6 gi|110667257|ref|YP_657068.1| - 0.0018 18.2 0.7 1.6 8.6 0.1 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF968) C1_1 PF00130.17 gi|110667257|ref|YP_657068.1| - 0.11 12.2 0.3 0.11 12.2 0.2 1.9 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF192 PF02643.10 gi|110667258|ref|YP_657069.1| - 2.5e-16 59.3 0.0 2.9e-16 59.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 HMGL-like PF00682.14 gi|110667259|ref|YP_657070.1| - 1.2e-56 192.0 0.7 1.2e-56 192.0 0.5 1.7 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.5 gi|110667259|ref|YP_657070.1| - 1e-29 103.0 0.8 2.1e-29 102.0 0.5 1.6 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain AP_endonuc_2 PF01261.19 gi|110667259|ref|YP_657070.1| - 0.017 14.4 0.1 0.052 12.8 0.0 1.9 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel DUF3631 PF12307.3 gi|110667259|ref|YP_657070.1| - 0.13 12.1 0.1 0.23 11.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3631) ABC_tran PF00005.22 gi|110667262|ref|YP_657073.1| - 3.1e-29 102.0 0.0 9.7e-29 100.4 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|110667262|ref|YP_657073.1| - 4.8e-12 46.4 0.1 4.9e-06 26.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|110667262|ref|YP_657073.1| - 0.00026 20.1 0.0 0.16 11.0 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|110667262|ref|YP_657073.1| - 0.00032 21.0 0.1 0.00089 19.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|110667262|ref|YP_657073.1| - 0.00034 20.0 0.2 0.0017 17.8 0.1 2.1 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|110667262|ref|YP_657073.1| - 0.00065 19.7 0.1 0.0017 18.4 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|110667262|ref|YP_657073.1| - 0.0022 17.4 0.2 0.0044 16.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|110667262|ref|YP_657073.1| - 0.0029 17.1 0.1 0.0082 15.6 0.0 1.6 1 1 0 1 1 1 1 AAA-like domain UPF0079 PF02367.12 gi|110667262|ref|YP_657073.1| - 0.0045 16.6 0.1 0.012 15.2 0.0 1.6 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|110667262|ref|YP_657073.1| - 0.0068 15.5 0.2 0.016 14.3 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|110667262|ref|YP_657073.1| - 0.0077 16.3 0.4 0.082 13.0 0.3 2.2 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|110667262|ref|YP_657073.1| - 0.0079 15.3 0.0 0.025 13.6 0.0 1.9 3 0 0 3 3 3 1 Zeta toxin SMC_N PF02463.14 gi|110667262|ref|YP_657073.1| - 0.0082 15.3 0.0 0.033 13.3 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Arch_ATPase PF01637.13 gi|110667262|ref|YP_657073.1| - 0.013 15.2 0.0 0.028 14.1 0.0 1.6 1 0 0 1 1 1 0 Archaeal ATPase AAA PF00004.24 gi|110667262|ref|YP_657073.1| - 0.018 15.2 0.0 0.067 13.3 0.0 2.0 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.14 gi|110667262|ref|YP_657073.1| - 0.031 13.7 0.2 0.091 12.1 0.1 1.8 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|110667262|ref|YP_657073.1| - 0.04 13.7 0.0 0.096 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|110667262|ref|YP_657073.1| - 0.044 13.6 0.0 0.16 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|110667262|ref|YP_657073.1| - 0.059 13.1 0.8 0.22 11.2 0.1 2.3 2 0 0 2 2 2 0 Part of AAA domain MobB PF03205.9 gi|110667262|ref|YP_657073.1| - 0.081 12.6 0.2 0.23 11.1 0.1 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|110667262|ref|YP_657073.1| - 0.083 12.4 0.0 0.19 11.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain ABC_cobalt PF09819.4 gi|110667264|ref|YP_657075.1| - 2.3 8.2 9.4 9.6 6.1 6.5 1.9 1 1 0 1 1 1 0 ABC-type cobalt transport system, permease component FAD_binding_7 PF03441.9 gi|110667265|ref|YP_657076.1| - 1.2e-81 274.0 0.2 1.5e-81 273.7 0.2 1.1 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|110667265|ref|YP_657076.1| - 1.3e-35 122.6 0.0 2e-35 121.9 0.0 1.3 1 0 0 1 1 1 1 DNA photolyase Usp PF00582.21 gi|110667265|ref|YP_657076.1| - 0.017 15.2 0.1 0.035 14.2 0.0 1.5 1 0 0 1 1 1 0 Universal stress protein family F420_oxidored PF03807.12 gi|110667266|ref|YP_657077.1| - 2.4e-19 69.5 0.0 4e-19 68.8 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent adh_short PF00106.20 gi|110667266|ref|YP_657077.1| - 0.0042 17.0 2.7 0.018 14.9 0.0 2.5 2 1 1 3 3 3 1 short chain dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|110667266|ref|YP_657077.1| - 0.0099 15.6 0.0 0.021 14.5 0.0 1.5 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PDH PF02153.12 gi|110667266|ref|YP_657077.1| - 0.011 14.6 0.1 0.017 14.0 0.0 1.3 1 0 0 1 1 1 0 Prephenate dehydrogenase KR PF08659.5 gi|110667266|ref|YP_657077.1| - 0.028 14.0 0.3 0.072 12.7 0.0 1.7 2 1 1 3 3 3 0 KR domain Semialdhyde_dh PF01118.19 gi|110667266|ref|YP_657077.1| - 0.064 13.5 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain ApbA PF02558.11 gi|110667266|ref|YP_657077.1| - 0.12 11.8 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA PRA-PH PF01503.12 gi|110667267|ref|YP_657078.1| - 2.3e-11 43.8 1.1 2.7e-11 43.5 0.8 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|110667267|ref|YP_657078.1| - 0.031 14.2 2.0 0.046 13.6 1.4 1.3 1 0 0 1 1 1 0 MazG nucleotide pyrophosphohydrolase domain SNO PF01174.14 gi|110667268|ref|YP_657079.1| - 2.7e-51 173.8 0.0 3.2e-51 173.6 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|110667268|ref|YP_657079.1| - 6.4e-11 42.1 0.0 1.1e-10 41.3 0.0 1.5 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.12 gi|110667268|ref|YP_657079.1| - 2.5e-05 24.0 0.0 3.5e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.23 gi|110667268|ref|YP_657079.1| - 0.00012 21.5 0.0 0.00022 20.7 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.19 gi|110667268|ref|YP_657079.1| - 0.00031 20.2 0.1 0.00047 19.6 0.1 1.5 1 1 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|110667268|ref|YP_657079.1| - 0.0078 15.4 0.1 0.014 14.6 0.1 1.4 1 0 0 1 1 1 1 Putative amidotransferase Aconitase PF00330.15 gi|110667268|ref|YP_657079.1| - 0.0092 14.5 0.0 0.012 14.0 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) BPL_N PF09825.4 gi|110667268|ref|YP_657079.1| - 0.013 14.2 0.0 0.13 10.9 0.0 2.0 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal Sec61_beta PF03911.11 gi|110667269|ref|YP_657080.1| - 8.4e-08 31.8 0.0 1.1e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 Sec61beta family SnoaL_2 PF12680.2 gi|110667270|ref|YP_657081.1| - 4.8e-09 36.5 3.2 5.7e-09 36.2 2.2 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_3 PF13474.1 gi|110667270|ref|YP_657081.1| - 5.7e-06 26.3 1.5 6.4e-06 26.1 1.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.1 gi|110667270|ref|YP_657081.1| - 0.00092 19.3 1.3 0.0013 18.9 0.9 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4440) LEH PF07858.7 gi|110667270|ref|YP_657081.1| - 0.014 15.3 0.5 0.041 13.8 0.3 1.7 1 1 0 1 1 1 0 Limonene-1,2-epoxide hydrolase catalytic domain FRD2 PF03197.8 gi|110667270|ref|YP_657081.1| - 0.088 13.3 0.8 0.13 12.8 0.5 1.3 1 1 0 1 1 1 0 Bacteriophage FRD2 protein HHH_5 PF14520.1 gi|110667271|ref|YP_657082.1| - 3.3e-07 30.3 0.6 1e-06 28.7 0.2 1.9 1 1 1 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|110667271|ref|YP_657082.1| - 0.0018 18.1 0.9 0.0037 17.1 0.0 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.18 gi|110667271|ref|YP_657082.1| - 0.1 12.3 0.1 0.72 9.6 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix motif DUF896 PF05979.7 gi|110667271|ref|YP_657082.1| - 0.13 11.9 0.6 0.29 10.7 0.4 1.7 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF896) ABC_tran PF00005.22 gi|110667273|ref|YP_657084.1| - 9.1e-33 113.4 0.0 1.9e-32 112.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|110667273|ref|YP_657084.1| - 2.1e-19 69.6 0.4 4.8e-19 68.4 0.3 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|110667273|ref|YP_657084.1| - 1.7e-07 31.4 0.1 8.5e-05 22.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|110667273|ref|YP_657084.1| - 0.006 15.8 0.3 0.034 13.3 0.2 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|110667273|ref|YP_657084.1| - 0.0062 16.0 0.6 0.011 15.2 0.4 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|110667273|ref|YP_657084.1| - 0.047 13.8 1.4 0.61 10.2 1.0 2.3 1 1 0 1 1 1 0 AAA domain AIG1 PF04548.11 gi|110667273|ref|YP_657084.1| - 0.058 12.4 0.4 0.097 11.7 0.2 1.3 1 0 0 1 1 1 0 AIG1 family SbcCD_C PF13558.1 gi|110667273|ref|YP_657084.1| - 0.12 12.2 0.1 0.77 9.7 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.22 gi|110667274|ref|YP_657085.1| - 1.4e-24 86.9 0.0 2.5e-24 86.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|110667274|ref|YP_657085.1| - 1e-16 61.0 0.0 2e-16 60.0 0.0 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|110667274|ref|YP_657085.1| - 1.3e-08 35.2 1.0 3.3e-07 30.5 0.0 2.7 3 0 0 3 3 3 1 AAA domain AAA_10 PF12846.2 gi|110667274|ref|YP_657085.1| - 7.5e-05 22.3 0.0 0.0063 15.9 0.0 2.0 1 1 1 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|110667274|ref|YP_657085.1| - 0.0018 18.4 0.0 2.1 8.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|110667274|ref|YP_657085.1| - 0.0046 16.9 0.1 0.025 14.5 0.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain ATP-synt_ab PF00006.20 gi|110667274|ref|YP_657085.1| - 0.022 14.2 0.0 0.034 13.6 0.0 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.1 gi|110667274|ref|YP_657085.1| - 0.063 12.8 0.1 0.13 11.8 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|110667274|ref|YP_657085.1| - 0.084 12.3 0.1 0.18 11.2 0.1 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_15 PF13175.1 gi|110667274|ref|YP_657085.1| - 0.17 10.9 0.0 0.17 10.9 0.0 2.1 3 0 0 3 3 3 0 AAA ATPase domain DUF87 PF01935.12 gi|110667274|ref|YP_657085.1| - 1.1 9.0 3.8 0.35 10.6 0.3 1.8 2 0 0 2 2 2 0 Domain of unknown function DUF87 BPD_transp_1 PF00528.17 gi|110667275|ref|YP_657086.1| - 1.2e-28 99.9 16.1 1.2e-28 99.9 11.1 2.2 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|110667275|ref|YP_657086.1| - 3.3e-10 39.1 0.2 1.5e-09 37.0 0.1 2.2 1 0 0 1 1 1 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|110667276|ref|YP_657087.1| - 2.6e-37 128.1 10.5 2.6e-37 128.1 7.3 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|110667277|ref|YP_657088.1| - 6.4e-50 170.0 0.3 9.1e-50 169.5 0.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|110667277|ref|YP_657088.1| - 0.0019 18.0 0.6 0.0051 16.7 0.4 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence LPAM_2 PF13627.1 gi|110667277|ref|YP_657088.1| - 3.2 7.5 6.0 5.1 6.9 4.2 1.3 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site AA_permease_2 PF13520.1 gi|110667280|ref|YP_657091.1| - 2.5e-57 194.3 48.8 3.1e-57 194.0 33.8 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|110667280|ref|YP_657091.1| - 1.1e-49 169.0 44.6 1.5e-49 168.6 30.9 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.1 gi|110667280|ref|YP_657091.1| - 9.3e-06 25.4 5.3 9.3e-06 25.4 3.7 4.0 5 0 0 5 5 5 1 C-terminus of AA_permease TrkA_N PF02254.13 gi|110667281|ref|YP_657092.1| - 1.2e-23 83.3 0.4 1.9e-23 82.6 0.3 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|110667281|ref|YP_657092.1| - 7.5e-08 31.8 0.2 2.4e-06 27.0 0.0 2.4 2 0 0 2 2 2 1 TrkA-C domain Pyr_redox_2 PF07992.9 gi|110667281|ref|YP_657092.1| - 1.1e-05 25.4 0.2 1.3e-05 25.1 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|110667281|ref|YP_657092.1| - 3e-05 24.2 0.1 5.2e-05 23.4 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|110667281|ref|YP_657092.1| - 5.3e-05 22.6 0.2 0.0002 20.7 0.0 1.9 1 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.19 gi|110667281|ref|YP_657092.1| - 5.6e-05 22.2 0.4 0.00011 21.2 0.1 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|110667281|ref|YP_657092.1| - 0.00011 21.3 0.1 0.00021 20.4 0.0 1.4 1 1 0 1 1 1 1 FAD binding domain F420_oxidored PF03807.12 gi|110667281|ref|YP_657092.1| - 0.00054 20.3 0.1 0.0052 17.1 0.0 2.6 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|110667281|ref|YP_657092.1| - 0.0022 18.3 0.0 0.006 16.9 0.0 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|110667281|ref|YP_657092.1| - 0.0024 17.8 0.0 0.013 15.5 0.0 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Shikimate_DH PF01488.15 gi|110667281|ref|YP_657092.1| - 0.008 16.2 0.0 0.014 15.4 0.0 1.5 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|110667281|ref|YP_657092.1| - 0.012 15.2 0.3 0.028 14.0 0.2 1.8 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|110667281|ref|YP_657092.1| - 0.035 13.9 0.1 0.19 11.5 0.1 2.1 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Trp_halogenase PF04820.9 gi|110667281|ref|YP_657092.1| - 0.04 12.5 0.0 0.074 11.6 0.0 1.4 1 0 0 1 1 1 0 Tryptophan halogenase NAD_binding_10 PF13460.1 gi|110667281|ref|YP_657092.1| - 0.042 13.8 0.5 0.081 12.9 0.4 1.6 1 1 0 1 1 1 0 NADH(P)-binding GIDA PF01134.17 gi|110667281|ref|YP_657092.1| - 0.066 12.0 0.2 0.084 11.7 0.1 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A Saccharop_dh PF03435.13 gi|110667281|ref|YP_657092.1| - 0.068 12.1 0.2 0.1 11.5 0.1 1.5 1 1 0 1 1 1 0 Saccharopine dehydrogenase Glyco_transf_4 PF13439.1 gi|110667281|ref|YP_657092.1| - 0.091 12.4 0.1 0.17 11.5 0.1 1.5 1 1 0 1 1 1 0 Glycosyltransferase Family 4 ApbA PF02558.11 gi|110667281|ref|YP_657092.1| - 0.11 11.8 0.2 0.2 11.1 0.1 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GMC_oxred_N PF00732.14 gi|110667281|ref|YP_657092.1| - 0.12 11.4 0.0 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 GMC oxidoreductase RrnaAD PF00398.15 gi|110667281|ref|YP_657092.1| - 0.16 10.9 0.0 0.21 10.5 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Rossmann-like PF10727.4 gi|110667281|ref|YP_657092.1| - 0.23 11.1 1.8 1.6 8.4 0.0 2.3 2 1 0 2 2 2 0 Rossmann-like domain TrkA_C PF02080.16 gi|110667282|ref|YP_657093.1| - 2.1e-12 46.4 0.1 5.2e-12 45.1 0.0 1.7 1 0 0 1 1 1 1 TrkA-C domain HTH_24 PF13412.1 gi|110667282|ref|YP_657093.1| - 8.8e-06 25.0 0.0 1.5e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|110667282|ref|YP_657093.1| - 0.00038 20.1 0.0 0.001 18.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|110667282|ref|YP_657093.1| - 0.00041 19.8 0.0 0.001 18.5 0.0 1.8 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.7 gi|110667282|ref|YP_657093.1| - 0.00069 19.2 0.0 0.0012 18.4 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.1 gi|110667282|ref|YP_657093.1| - 0.0064 16.0 0.0 0.011 15.1 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|110667282|ref|YP_657093.1| - 0.019 14.6 0.0 0.18 11.5 0.0 2.4 2 0 0 2 2 2 0 MarR family Fe_dep_repress PF01325.14 gi|110667282|ref|YP_657093.1| - 0.037 13.9 0.0 0.068 13.1 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|110667282|ref|YP_657093.1| - 0.039 13.6 0.0 0.1 12.3 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_5 PF01022.15 gi|110667282|ref|YP_657093.1| - 0.053 13.1 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|110667282|ref|YP_657093.1| - 0.069 13.1 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|110667282|ref|YP_657093.1| - 0.14 11.8 0.0 0.28 10.8 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Y1_Tnp PF01797.11 gi|110667283|ref|YP_657094.1| - 2.1e-29 101.8 0.0 2.5e-29 101.6 0.0 1.1 1 0 0 1 1 1 1 Transposase IS200 like OrfB_IS605 PF01385.14 gi|110667284|ref|YP_657095.1| - 1.3e-07 31.2 0.0 2.7e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|110667285|ref|YP_657096.1| - 3e-17 62.0 3.1 3e-17 62.0 2.1 1.5 2 0 0 2 2 2 1 Putative transposase DNA-binding domain zf-tcix PF14952.1 gi|110667285|ref|YP_657096.1| - 0.02 14.1 3.5 0.044 13.1 2.5 1.6 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding Chorion_2 PF03964.10 gi|110667285|ref|YP_657096.1| - 0.071 13.6 0.4 0.088 13.3 0.3 1.3 1 0 0 1 1 1 0 Chorion family 2 4HBT PF03061.17 gi|110667286|ref|YP_657097.1| - 1.2e-14 54.1 0.2 1.6e-14 53.7 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily zf-C2H2_4 PF13894.1 gi|110667287|ref|YP_657098.1| - 0.0013 18.8 0.0 0.038 14.3 0.0 2.4 2 0 0 2 2 2 1 C2H2-type zinc finger zf-Di19 PF05605.7 gi|110667287|ref|YP_657098.1| - 0.0032 17.5 0.3 0.0053 16.8 0.2 1.4 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zf-C2H2 PF00096.21 gi|110667287|ref|YP_657098.1| - 0.0033 17.6 0.8 0.042 14.2 0.0 2.4 2 0 0 2 2 2 1 Zinc finger, C2H2 type zf-C2H2_2 PF12756.2 gi|110667287|ref|YP_657098.1| - 0.0066 16.5 0.3 0.014 15.4 0.2 1.6 1 0 0 1 1 1 1 C2H2 type zinc-finger (2 copies) HypA PF01155.14 gi|110667287|ref|YP_657098.1| - 0.033 13.8 0.2 0.068 12.8 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Elf1 PF05129.8 gi|110667287|ref|YP_657098.1| - 0.073 12.7 1.0 4 7.2 0.1 2.3 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-RING_3 PF14369.1 gi|110667287|ref|YP_657098.1| - 0.14 12.1 1.9 12 6.0 0.2 2.4 2 0 0 2 2 2 0 zinc-finger HNH PF01844.18 gi|110667287|ref|YP_657098.1| - 0.19 11.6 1.3 11 5.9 0.1 2.5 2 0 0 2 2 2 0 HNH endonuclease DUF4215 PF13948.1 gi|110667287|ref|YP_657098.1| - 0.32 11.2 4.4 2.2 8.5 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4215) Zn-ribbon_8 PF09723.5 gi|110667287|ref|YP_657098.1| - 0.78 9.7 3.8 50 3.9 2.7 2.4 1 1 0 1 1 1 0 Zinc ribbon domain DUF3891 PF13030.1 gi|110667288|ref|YP_657099.1| - 7.5e-69 231.5 0.1 9.1e-69 231.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3891) Thioredoxin PF00085.15 gi|110667289|ref|YP_657100.1| - 1.9e-22 78.9 0.0 2.2e-22 78.7 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|110667289|ref|YP_657100.1| - 1.4e-08 34.6 0.1 7.6e-05 22.7 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|110667289|ref|YP_657100.1| - 8.9e-07 29.0 0.1 1.2e-05 25.4 0.1 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|110667289|ref|YP_657100.1| - 1.4e-05 24.7 0.0 1.6e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|110667289|ref|YP_657100.1| - 4.5e-05 23.0 0.0 4.9e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Redoxin PF08534.5 gi|110667289|ref|YP_657100.1| - 5.1e-05 22.8 0.2 0.0021 17.5 0.0 2.0 1 1 1 2 2 2 2 Redoxin AhpC-TSA PF00578.16 gi|110667289|ref|YP_657100.1| - 0.00037 20.1 0.3 0.2 11.3 0.0 2.0 1 1 1 2 2 2 2 AhpC/TSA family Glutaredoxin PF00462.19 gi|110667289|ref|YP_657100.1| - 0.00045 20.1 0.1 0.00075 19.4 0.1 1.5 1 1 0 1 1 1 1 Glutaredoxin Thioredoxin_7 PF13899.1 gi|110667289|ref|YP_657100.1| - 0.0029 17.6 0.7 0.0077 16.2 0.1 2.0 2 1 0 2 2 2 1 Thioredoxin-like DUF836 PF05768.9 gi|110667289|ref|YP_657100.1| - 0.025 14.8 0.1 0.03 14.5 0.1 1.1 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) DSBA PF01323.15 gi|110667289|ref|YP_657100.1| - 0.039 13.5 0.4 1.2 8.6 0.0 1.9 1 1 1 2 2 2 0 DSBA-like thioredoxin domain Thioredoxin_5 PF13743.1 gi|110667289|ref|YP_657100.1| - 0.077 12.5 0.0 0.086 12.4 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin Phosducin PF02114.11 gi|110667289|ref|YP_657100.1| - 0.093 11.4 0.0 0.1 11.3 0.0 1.0 1 0 0 1 1 1 0 Phosducin TraF PF13728.1 gi|110667289|ref|YP_657100.1| - 0.12 11.8 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 F plasmid transfer operon protein Ribosomal_L40e PF01020.12 gi|110667290|ref|YP_657101.1| - 4.5e-08 32.5 5.3 5.2e-08 32.3 3.7 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.2 gi|110667290|ref|YP_657101.1| - 0.00072 19.3 1.6 0.00078 19.2 1.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-DHHC PF01529.15 gi|110667290|ref|YP_657101.1| - 0.0011 18.4 1.7 0.0011 18.4 1.2 1.0 1 0 0 1 1 1 1 DHHC palmitoyltransferase zinc_ribbon_2 PF13240.1 gi|110667290|ref|YP_657101.1| - 0.017 14.6 1.4 0.023 14.1 1.0 1.2 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|110667290|ref|YP_657101.1| - 0.03 13.5 1.3 0.037 13.2 0.9 1.2 1 0 0 1 1 1 0 zinc-ribbon domain SelP_N PF04592.9 gi|110667290|ref|YP_657101.1| - 0.092 12.1 0.5 0.096 12.0 0.4 1.0 1 0 0 1 1 1 0 Selenoprotein P, N terminal region zf-RanBP PF00641.13 gi|110667290|ref|YP_657101.1| - 0.19 10.8 4.8 0.57 9.3 3.4 1.8 1 1 0 1 1 1 0 Zn-finger in Ran binding protein and others Toxin_5 PF05294.8 gi|110667290|ref|YP_657101.1| - 0.2 11.8 2.5 0.28 11.4 1.7 1.2 1 0 0 1 1 1 0 Scorpion short toxin HypA PF01155.14 gi|110667290|ref|YP_657101.1| - 0.26 10.9 1.5 0.27 10.9 1.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DNA_RNApol_7kD PF03604.8 gi|110667290|ref|YP_657101.1| - 0.36 10.3 5.2 1 8.8 3.6 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit RNA_POL_M_15KD PF02150.11 gi|110667290|ref|YP_657101.1| - 0.85 9.3 6.0 4.8 6.9 4.1 2.0 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit T2SE PF00437.15 gi|110667293|ref|YP_657104.1| - 3e-25 88.6 0.6 8e-25 87.2 0.0 1.9 3 0 0 3 3 3 1 Type II/IV secretion system protein AAA_33 PF13671.1 gi|110667293|ref|YP_657104.1| - 0.00053 19.8 1.8 0.036 13.9 0.0 3.4 3 0 0 3 3 3 1 AAA domain AAA_29 PF13555.1 gi|110667293|ref|YP_657104.1| - 0.0014 18.0 0.0 0.0029 17.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|110667293|ref|YP_657104.1| - 0.0018 18.6 0.1 0.0051 17.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|110667293|ref|YP_657104.1| - 0.0044 17.8 0.2 0.051 14.4 0.0 2.9 2 2 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|110667293|ref|YP_657104.1| - 0.021 15.1 0.0 0.11 12.7 0.0 2.2 2 0 0 2 2 2 0 ABC transporter AAA_16 PF13191.1 gi|110667293|ref|YP_657104.1| - 0.021 14.7 0.0 0.15 12.0 0.0 2.4 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|110667293|ref|YP_657104.1| - 0.03 14.4 0.1 0.26 11.4 0.0 2.6 2 1 0 2 2 2 0 AAA domain MobB PF03205.9 gi|110667293|ref|YP_657104.1| - 0.04 13.6 0.0 1.3 8.7 0.0 2.8 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|110667293|ref|YP_657104.1| - 0.045 13.1 0.0 0.13 11.7 0.0 1.8 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF258 PF03193.11 gi|110667293|ref|YP_657104.1| - 0.073 12.2 0.0 0.14 11.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|110667293|ref|YP_657104.1| - 0.23 11.7 1.9 4.1 7.7 0.0 2.6 2 0 0 2 2 2 0 AAA domain T2SF PF00482.18 gi|110667294|ref|YP_657105.1| - 3e-17 62.6 0.5 3.1e-09 36.7 0.3 2.7 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F DUF1628 PF07790.6 gi|110667295|ref|YP_657106.1| - 0.00062 20.4 0.1 0.0019 18.9 0.1 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF1628 PF07790.6 gi|110667296|ref|YP_657107.1| - 0.011 16.4 0.4 0.011 16.4 0.3 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1628) TraT PF05818.7 gi|110667296|ref|YP_657107.1| - 0.036 13.4 0.0 0.063 12.6 0.0 1.3 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein GTP_EFTU PF00009.22 gi|110667299|ref|YP_657110.1| - 4.8e-42 143.5 0.2 7e-42 142.9 0.1 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|110667299|ref|YP_657110.1| - 4.6e-27 93.8 0.1 1e-26 92.7 0.0 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|110667299|ref|YP_657110.1| - 7.6e-08 32.3 1.7 2.7e-07 30.5 1.2 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|110667299|ref|YP_657110.1| - 0.0012 18.7 0.0 0.0023 17.8 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|110667299|ref|YP_657110.1| - 0.0018 17.7 1.0 0.098 12.1 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Miro PF08477.8 gi|110667299|ref|YP_657110.1| - 0.034 14.6 0.0 0.11 13.0 0.0 1.9 1 1 0 1 1 1 0 Miro-like protein FeoB_N PF02421.13 gi|110667299|ref|YP_657110.1| - 0.034 13.4 1.3 4.5 6.5 0.0 2.5 2 1 0 2 2 2 0 Ferrous iron transport protein B SRPRB PF09439.5 gi|110667299|ref|YP_657110.1| - 0.13 11.4 0.0 9 5.4 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Fcf1 PF04900.7 gi|110667300|ref|YP_657111.1| - 0.0014 18.6 0.0 1.8 8.7 0.0 2.2 2 0 0 2 2 2 2 Fcf1 DUF188 PF02639.9 gi|110667300|ref|YP_657111.1| - 0.0016 17.8 0.4 1 8.8 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized BCR, YaiI/YqxD family COG1671 SHS2_Rpb7-N PF03876.12 gi|110667301|ref|YP_657112.1| - 2.7e-15 56.2 0.0 4.2e-15 55.6 0.0 1.3 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|110667301|ref|YP_657112.1| - 1.5e-13 50.6 0.5 2.5e-13 49.8 0.3 1.4 1 0 0 1 1 1 1 S1 RNA binding domain S1_2 PF13509.1 gi|110667301|ref|YP_657112.1| - 0.046 13.6 0.0 1.6 8.7 0.0 2.4 1 1 0 1 1 1 0 S1 domain Spt4 PF06093.8 gi|110667302|ref|YP_657113.1| - 3.8e-14 52.3 0.2 4.4e-14 52.1 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.2 gi|110667302|ref|YP_657113.1| - 0.00042 20.0 1.3 0.00052 19.7 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RanBP PF00641.13 gi|110667302|ref|YP_657113.1| - 0.0018 17.3 3.3 0.0025 16.8 2.3 1.3 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zf-ribbon_3 PF13248.1 gi|110667302|ref|YP_657113.1| - 0.029 13.5 2.1 0.075 12.2 1.6 1.5 1 1 1 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|110667302|ref|YP_657113.1| - 0.052 13.2 0.8 0.062 12.9 0.5 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family NOB1_Zn_bind PF08772.6 gi|110667302|ref|YP_657113.1| - 0.092 12.5 0.1 0.097 12.5 0.1 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like ADH_N PF08240.7 gi|110667302|ref|YP_657113.1| - 0.11 12.2 0.3 0.12 12.1 0.2 1.2 1 0 0 1 1 1 0 Alcohol dehydrogenase GroES-like domain TF_Zn_Ribbon PF08271.7 gi|110667302|ref|YP_657113.1| - 0.12 11.7 0.4 0.36 10.1 0.0 1.9 2 0 0 2 2 2 0 TFIIB zinc-binding NCD3G PF07562.9 gi|110667302|ref|YP_657113.1| - 0.13 11.9 2.8 0.19 11.4 1.9 1.2 1 0 0 1 1 1 0 Nine Cysteines Domain of family 3 GPCR DUF2810 PF10928.3 gi|110667302|ref|YP_657113.1| - 0.14 11.9 0.0 0.17 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2810) zinc_ribbon_2 PF13240.1 gi|110667302|ref|YP_657113.1| - 0.17 11.4 3.6 0.25 10.8 2.5 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|110667302|ref|YP_657113.1| - 0.22 11.5 2.2 6.1 6.9 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DNA_RNApol_7kD PF03604.8 gi|110667302|ref|YP_657113.1| - 0.4 10.1 3.6 5 6.6 2.7 2.1 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Nudix_N_2 PF14803.1 gi|110667302|ref|YP_657113.1| - 0.44 10.2 5.3 1.6 8.4 0.7 2.2 2 0 0 2 2 2 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.6 gi|110667302|ref|YP_657113.1| - 0.96 9.1 5.9 4.4 7.0 0.6 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.11 gi|110667302|ref|YP_657113.1| - 1.3 8.7 4.9 1.1 8.9 0.2 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit DUF359 PF04019.7 gi|110667303|ref|YP_657114.1| - 1.1e-40 137.8 0.5 1.3e-40 137.5 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) MbeB_N PF04837.7 gi|110667303|ref|YP_657114.1| - 0.044 13.8 0.1 0.17 11.9 0.1 1.9 1 0 0 1 1 1 0 MbeB-like, N-term conserved region Ribosomal_S24e PF01282.14 gi|110667304|ref|YP_657115.1| - 3.3e-29 100.5 0.2 4e-29 100.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Phage_holin_T PF11031.3 gi|110667304|ref|YP_657115.1| - 0.051 12.7 0.0 0.06 12.4 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage T holin DUF1762 PF08574.5 gi|110667304|ref|YP_657115.1| - 0.078 13.4 2.2 0.14 12.5 1.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1762) hNIFK_binding PF12196.3 gi|110667304|ref|YP_657115.1| - 0.27 10.6 2.0 0.51 9.7 0.1 2.1 2 0 0 2 2 2 0 FHA Ki67 binding domain of hNIFK Peptidase_M22 PF00814.20 gi|110667305|ref|YP_657116.1| - 2.1e-72 243.8 0.0 3e-72 243.3 0.0 1.2 1 0 0 1 1 1 1 Glycoprotease family APH PF01636.18 gi|110667305|ref|YP_657116.1| - 0.00037 20.3 8.0 0.028 14.1 0.4 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|110667305|ref|YP_657116.1| - 0.003 16.6 0.1 0.017 14.2 0.0 2.0 2 0 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family RIO1 PF01163.17 gi|110667305|ref|YP_657116.1| - 0.014 14.7 0.0 0.032 13.5 0.0 1.5 1 1 0 1 1 1 0 RIO1 family Ham1p_like PF01725.11 gi|110667307|ref|YP_657118.1| - 7.8e-41 139.5 0.0 1.1e-40 139.1 0.0 1.2 1 0 0 1 1 1 1 Ham1 family PIN_3 PF13470.1 gi|110667308|ref|YP_657119.1| - 0.0011 19.6 0.7 0.0047 17.5 0.5 2.0 1 1 0 1 1 1 1 PIN domain PEPCK_ATP PF01293.15 gi|110667308|ref|YP_657119.1| - 0.0045 15.5 0.0 0.0068 14.9 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase MCPVI PF02993.9 gi|110667308|ref|YP_657119.1| - 0.059 13.5 0.4 0.09 12.9 0.3 1.2 1 0 0 1 1 1 0 Minor capsid protein VI TrkA_N PF02254.13 gi|110667309|ref|YP_657120.1| - 1.2e-23 83.2 0.2 1.9e-23 82.6 0.2 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|110667309|ref|YP_657120.1| - 3.8e-10 39.1 0.2 8.8e-10 38.0 0.1 1.6 2 0 0 2 2 2 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.9 gi|110667309|ref|YP_657120.1| - 9.9e-06 25.0 0.2 3.3e-05 23.3 0.1 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|110667309|ref|YP_657120.1| - 0.00015 21.4 0.1 0.00027 20.6 0.1 1.5 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|110667309|ref|YP_657120.1| - 0.0004 20.7 0.0 0.00071 19.8 0.0 1.7 1 1 0 1 1 1 1 XdhC Rossmann domain AdoHcyase_NAD PF00670.16 gi|110667309|ref|YP_657120.1| - 0.00071 19.4 0.3 0.0013 18.6 0.2 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|110667309|ref|YP_657120.1| - 0.00091 18.4 0.0 0.0014 17.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|110667309|ref|YP_657120.1| - 0.0017 18.5 0.1 0.0027 17.9 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding IlvN PF07991.7 gi|110667309|ref|YP_657120.1| - 0.0018 17.6 0.2 0.003 16.9 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain Saccharop_dh PF03435.13 gi|110667309|ref|YP_657120.1| - 0.0029 16.6 0.1 0.0035 16.3 0.1 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_2 PF03446.10 gi|110667309|ref|YP_657120.1| - 0.0046 16.8 0.1 0.0097 15.7 0.0 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.16 gi|110667309|ref|YP_657120.1| - 0.0054 16.3 0.1 0.0084 15.6 0.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.1 gi|110667309|ref|YP_657120.1| - 0.0056 16.6 0.2 0.0068 16.4 0.1 1.2 1 0 0 1 1 1 1 NADH(P)-binding FAD_binding_3 PF01494.14 gi|110667309|ref|YP_657120.1| - 0.011 14.8 0.0 0.014 14.4 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Gmad2 PF10648.4 gi|110667310|ref|YP_657121.1| - 0.00045 20.3 0.3 0.00091 19.3 0.2 1.5 1 0 0 1 1 1 1 Immunoglobulin-like domain of bacterial spore germination DUF2201 PF09967.4 gi|110667310|ref|YP_657121.1| - 0.0037 17.2 0.5 0.0037 17.2 0.3 1.7 2 0 0 2 2 2 1 VWA-like domain (DUF2201) ALS_ss_C PF10369.4 gi|110667310|ref|YP_657121.1| - 0.14 11.8 1.1 5 6.9 0.2 2.4 2 0 0 2 2 2 0 Small subunit of acetolactate synthase Pex14_N PF04695.8 gi|110667310|ref|YP_657121.1| - 0.2 11.6 2.1 0.48 10.4 1.5 1.6 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region TALPID3 PF15324.1 gi|110667310|ref|YP_657121.1| - 1.7 5.8 10.4 2.2 5.5 7.2 1.0 1 0 0 1 1 1 0 Hedgehog signalling target ABC2_membrane_5 PF13346.1 gi|110667311|ref|YP_657122.1| - 0.066 12.4 6.8 0.067 12.4 4.7 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2721 PF11026.3 gi|110667311|ref|YP_657122.1| - 0.26 10.9 4.9 0.29 10.7 3.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) Halogen_Hydrol PF10112.4 gi|110667311|ref|YP_657122.1| - 0.26 10.6 3.8 0.29 10.5 2.6 1.1 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein IncA PF04156.9 gi|110667311|ref|YP_657122.1| - 3.3 7.2 7.0 3.5 7.1 4.8 1.0 1 0 0 1 1 1 0 IncA protein DUF3149 PF11346.3 gi|110667311|ref|YP_657122.1| - 5.9 6.5 7.1 0.64 9.6 1.7 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3149) DUF2628 PF10947.3 gi|110667311|ref|YP_657122.1| - 6.7 6.5 8.2 7.9 6.3 5.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) PALP PF00291.20 gi|229560088|ref|YP_657123.2| - 6.1e-78 262.1 9.5 7.4e-78 261.8 6.6 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.1 gi|229560088|ref|YP_657123.2| - 3.2e-05 24.1 0.2 0.00046 20.4 0.0 2.6 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|229560088|ref|YP_657123.2| - 0.0008 18.8 0.1 0.0008 18.8 0.1 2.7 3 0 0 3 3 3 1 ACT domain Citrate_synt PF00285.16 gi|110667313|ref|YP_657124.1| - 4.5e-128 426.9 0.1 5.1e-128 426.7 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase SpoIIE PF07228.7 gi|110667313|ref|YP_657124.1| - 0.0092 15.7 0.8 0.02 14.5 0.0 1.9 2 1 0 2 2 2 1 Stage II sporulation protein E (SpoIIE) TrkA_C PF02080.16 gi|110667314|ref|YP_657125.1| - 2e-31 107.3 0.3 2.5e-17 62.2 0.0 2.6 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.14 gi|110667314|ref|YP_657125.1| - 7.9e-13 48.6 6.6 2.4e-06 27.9 1.7 2.5 2 0 0 2 2 2 2 PhoU domain bZIP_2 PF07716.10 gi|110667314|ref|YP_657125.1| - 0.095 12.5 0.4 5.6 6.8 0.0 2.4 2 0 0 2 2 2 0 Basic region leucine zipper Dicistro_VP4 PF11492.3 gi|110667314|ref|YP_657125.1| - 0.34 10.9 3.1 0.74 9.8 0.2 2.4 2 0 0 2 2 2 0 Cricket paralysis virus, VP4 DUF2273 PF10031.4 gi|110667315|ref|YP_657126.1| - 3.8 7.2 7.6 0.22 11.1 0.8 2.3 2 1 0 2 2 2 0 Small integral membrane protein (DUF2273) YrvL PF14184.1 gi|110667315|ref|YP_657126.1| - 3.9 7.2 7.0 5.7 6.7 4.8 1.2 1 1 0 1 1 1 0 Regulatory protein YrvL AstE_AspA PF04952.9 gi|110667316|ref|YP_657127.1| - 3.5e-51 173.8 0.0 4e-51 173.6 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family TMP_2 PF06791.8 gi|110667316|ref|YP_657127.1| - 0.042 13.4 0.0 0.062 12.9 0.0 1.2 1 0 0 1 1 1 0 Prophage tail length tape measure protein Antitoxin-MazE PF04014.13 gi|110667317|ref|YP_657128.1| - 4e-06 26.4 0.2 4.6e-06 26.2 0.2 1.1 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PALP PF00291.20 gi|110667318|ref|YP_657129.1| - 1.2e-37 129.8 2.4 1.3e-37 129.7 1.7 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme GAD PF02938.9 gi|110667318|ref|YP_657129.1| - 0.0039 17.2 0.0 0.0071 16.4 0.0 1.4 1 0 0 1 1 1 1 GAD domain OrfB_IS605 PF01385.14 gi|110667319|ref|YP_657130.1| - 2.5e-59 200.4 1.1 3.3e-59 200.0 0.7 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|110667319|ref|YP_657130.1| - 2e-12 46.5 3.7 2.8e-11 42.8 0.1 2.5 2 0 0 2 2 2 2 Putative transposase DNA-binding domain PCMT PF01135.14 gi|110667320|ref|YP_657131.1| - 3e-31 108.6 0.3 6.9e-26 91.0 0.1 2.1 2 0 0 2 2 2 2 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|110667320|ref|YP_657131.1| - 5.6e-07 29.0 0.0 1e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|110667320|ref|YP_657131.1| - 3.3e-06 26.7 0.0 4.6e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|110667320|ref|YP_657131.1| - 6.5e-06 26.1 0.1 1e-05 25.5 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|110667320|ref|YP_657131.1| - 6.8e-06 26.6 0.0 1.1e-05 25.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|110667320|ref|YP_657131.1| - 0.0016 18.8 0.0 0.0038 17.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|110667320|ref|YP_657131.1| - 0.0018 18.7 0.0 0.0035 17.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|110667320|ref|YP_657131.1| - 0.0044 16.6 0.0 0.0065 16.0 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_32 PF13679.1 gi|110667320|ref|YP_657131.1| - 0.014 15.0 0.1 0.024 14.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.15 gi|110667320|ref|YP_657131.1| - 0.061 12.3 0.0 0.088 11.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DUF3897 PF13036.1 gi|110667320|ref|YP_657131.1| - 0.062 12.9 0.1 0.09 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3897) UPF0020 PF01170.13 gi|110667320|ref|YP_657131.1| - 0.071 12.6 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|110667320|ref|YP_657131.1| - 0.098 11.7 0.2 0.16 11.0 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) VARLMGL PF14383.1 gi|110667320|ref|YP_657131.1| - 0.11 11.6 0.0 0.22 10.7 0.0 1.5 1 0 0 1 1 1 0 DUF761-associated sequence motif DUF2387 PF09526.5 gi|110667321|ref|YP_657132.1| - 0.0011 18.8 0.5 0.002 17.9 0.3 1.4 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) zinc_ribbon_5 PF13719.1 gi|110667321|ref|YP_657132.1| - 0.16 11.5 6.5 0.64 9.6 4.1 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|110667321|ref|YP_657132.1| - 0.37 10.5 6.8 2.4 7.9 4.3 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|110667321|ref|YP_657132.1| - 0.65 9.2 3.9 0.79 9.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Peptidase_M29 PF02073.10 gi|110667322|ref|YP_657133.1| - 9.4e-19 67.4 0.2 1.3e-16 60.3 0.0 2.1 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) FAM24 PF15193.1 gi|110667322|ref|YP_657133.1| - 0.064 13.4 0.5 0.14 12.3 0.1 1.8 2 0 0 2 2 2 0 FAM24 family Gp_dh_C PF02800.15 gi|110667323|ref|YP_657134.1| - 3e-18 65.7 0.0 4.7e-18 65.1 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|110667323|ref|YP_657134.1| - 6.7e-17 61.8 0.5 1.6e-15 57.3 0.4 2.4 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|110667323|ref|YP_657134.1| - 5.9e-10 39.1 0.4 2.8e-09 36.9 0.1 2.2 1 1 1 2 2 2 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|110667323|ref|YP_657134.1| - 0.00049 20.4 0.1 0.0013 19.1 0.0 1.7 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|110667323|ref|YP_657134.1| - 0.0025 16.9 0.3 0.0092 15.1 0.0 2.1 2 1 1 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|110667323|ref|YP_657134.1| - 0.0061 17.0 0.6 0.015 15.8 0.0 1.9 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Metallophos_2 PF12850.2 gi|110667324|ref|YP_657135.1| - 2.5e-17 63.1 0.2 3e-17 62.8 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|110667324|ref|YP_657135.1| - 5.5e-09 35.7 0.4 1.5e-08 34.2 0.3 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase OATP PF03137.15 gi|110667325|ref|YP_657136.1| - 0.019 13.0 0.1 0.019 13.0 0.0 1.0 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family DUF4418 PF14387.1 gi|110667325|ref|YP_657136.1| - 0.14 11.8 1.5 0.18 11.5 1.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) Peptidase_M24 PF00557.19 gi|110667326|ref|YP_657137.1| - 5.2e-16 58.8 1.8 1.2e-15 57.6 0.3 2.2 2 1 1 3 3 3 1 Metallopeptidase family M24 UvrD-helicase PF00580.16 gi|110667327|ref|YP_657138.1| - 8.3e-25 87.7 0.0 6.4e-12 45.3 0.1 2.3 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|110667327|ref|YP_657138.1| - 8.4e-11 41.9 0.0 6.8e-08 32.3 0.0 2.4 1 1 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|110667327|ref|YP_657138.1| - 6.7e-09 35.3 0.7 2.9e-08 33.3 0.0 2.3 3 0 0 3 3 3 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|110667327|ref|YP_657138.1| - 2e-07 31.0 0.7 4.7e-06 26.6 0.2 2.9 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|110667327|ref|YP_657138.1| - 1.8e-05 24.4 0.1 3.4 7.1 0.0 3.9 3 1 0 3 3 3 3 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.1 gi|110667327|ref|YP_657138.1| - 0.00081 19.5 0.0 1.6 8.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain Herpes_ori_bp PF02399.10 gi|110667327|ref|YP_657138.1| - 0.00083 17.4 0.0 0.0012 16.9 0.0 1.1 1 0 0 1 1 1 1 Origin of replication binding protein AAA_30 PF13604.1 gi|110667327|ref|YP_657138.1| - 0.0012 18.5 0.4 0.4 10.2 0.0 3.2 3 0 0 3 3 3 1 AAA domain AAA_11 PF13086.1 gi|110667327|ref|YP_657138.1| - 0.0025 17.4 0.0 0.013 15.0 0.0 2.1 3 0 0 3 3 3 1 AAA domain DEAD PF00270.24 gi|110667327|ref|YP_657138.1| - 0.015 14.8 0.0 5.3 6.5 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_25 PF13481.1 gi|110667327|ref|YP_657138.1| - 0.019 14.3 0.0 0.47 9.8 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|110667327|ref|YP_657138.1| - 0.023 15.5 0.2 0.11 13.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_12 PF13087.1 gi|110667327|ref|YP_657138.1| - 0.066 12.5 0.0 0.26 10.6 0.0 2.0 3 0 0 3 3 3 0 AAA domain Trypan_PARP PF05887.6 gi|110667328|ref|YP_657139.1| - 0.098 12.4 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) Neisseria_TspB PF05616.8 gi|110667328|ref|YP_657139.1| - 2 6.6 4.5 2.6 6.3 3.1 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein Peptidase_M32 PF02074.10 gi|110667329|ref|YP_657140.1| - 3.7e-150 500.8 0.1 4.2e-150 500.6 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase DUF3291 PF11695.3 gi|110667329|ref|YP_657140.1| - 0.06 12.7 0.0 0.13 11.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3291) Peptidase_M20 PF01546.23 gi|110667330|ref|YP_657141.1| - 2.6e-27 95.5 0.8 3.5e-27 95.1 0.5 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|110667330|ref|YP_657141.1| - 8.2e-15 54.5 1.2 9.9e-15 54.2 0.1 1.7 2 0 0 2 2 2 1 Peptidase dimerisation domain DUF1108 PF06531.6 gi|110667330|ref|YP_657141.1| - 0.11 12.6 0.0 0.29 11.3 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1108) T2SE PF00437.15 gi|110667331|ref|YP_657142.1| - 1.3e-13 50.5 0.0 2.6e-13 49.5 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|110667331|ref|YP_657142.1| - 1.7e-06 27.5 0.5 6.5e-06 25.6 0.0 2.4 2 0 0 2 2 2 1 KH domain AAA_17 PF13207.1 gi|110667331|ref|YP_657142.1| - 0.00013 22.8 0.0 0.00051 20.8 0.0 2.1 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|110667331|ref|YP_657142.1| - 0.0008 18.8 0.0 0.0022 17.4 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|110667331|ref|YP_657142.1| - 0.00097 19.0 0.0 0.0055 16.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|110667331|ref|YP_657142.1| - 0.00098 18.7 0.3 0.0091 15.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain KH_2 PF07650.12 gi|110667331|ref|YP_657142.1| - 0.001 18.5 1.1 0.0025 17.3 0.8 1.7 1 0 0 1 1 1 1 KH domain Zeta_toxin PF06414.7 gi|110667331|ref|YP_657142.1| - 0.0018 17.4 0.0 0.0035 16.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin NTPase_1 PF03266.10 gi|110667331|ref|YP_657142.1| - 0.0022 17.7 0.0 0.0055 16.4 0.0 1.7 1 0 0 1 1 1 1 NTPase AAA_19 PF13245.1 gi|110667331|ref|YP_657142.1| - 0.0023 17.6 0.0 0.0056 16.3 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|110667331|ref|YP_657142.1| - 0.004 17.1 0.0 0.0088 16.0 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain Thymidylate_kin PF02223.12 gi|110667331|ref|YP_657142.1| - 0.0043 16.4 0.0 0.014 14.8 0.0 1.7 1 1 1 2 2 2 1 Thymidylate kinase PIN_4 PF13638.1 gi|110667331|ref|YP_657142.1| - 0.0051 16.9 0.1 0.018 15.1 0.1 2.0 1 1 0 1 1 1 1 PIN domain DUF2620 PF10941.3 gi|110667331|ref|YP_657142.1| - 0.0085 16.1 0.1 0.023 14.7 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF2620 KH_3 PF13014.1 gi|110667331|ref|YP_657142.1| - 0.0097 15.5 0.3 0.033 13.8 0.2 1.9 1 0 0 1 1 1 1 KH domain AAA_18 PF13238.1 gi|110667331|ref|YP_657142.1| - 0.011 16.0 0.0 0.027 14.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|110667331|ref|YP_657142.1| - 0.012 14.8 0.0 0.026 13.7 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_22 PF13401.1 gi|110667331|ref|YP_657142.1| - 0.014 15.5 0.0 0.037 14.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|110667331|ref|YP_657142.1| - 0.024 14.3 0.0 0.051 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|110667331|ref|YP_657142.1| - 0.031 14.4 0.0 0.068 13.3 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.12 gi|110667331|ref|YP_657142.1| - 0.048 13.1 0.0 0.084 12.4 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Sigma54_activ_2 PF14532.1 gi|110667331|ref|YP_657142.1| - 0.051 13.6 0.0 0.14 12.1 0.0 1.7 2 0 0 2 2 1 0 Sigma-54 interaction domain AAA_14 PF13173.1 gi|110667331|ref|YP_657142.1| - 0.067 13.0 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|110667331|ref|YP_657142.1| - 0.097 11.8 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|110667331|ref|YP_657142.1| - 0.1 12.2 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain IstB_IS21 PF01695.12 gi|110667331|ref|YP_657142.1| - 0.13 11.6 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|110667331|ref|YP_657142.1| - 0.14 12.3 0.0 0.32 11.2 0.0 1.6 1 0 0 1 1 1 0 RNA helicase TrmB PF01978.14 gi|110667332|ref|YP_657143.1| - 0.012 15.2 0.1 0.018 14.7 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2540 PF10802.3 gi|110667332|ref|YP_657143.1| - 0.02 14.5 0.1 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2540) HTH_27 PF13463.1 gi|110667332|ref|YP_657143.1| - 0.022 15.0 0.0 0.033 14.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|110667332|ref|YP_657143.1| - 0.031 13.9 0.0 0.048 13.3 0.0 1.2 1 0 0 1 1 1 0 MarR family TFIIE_alpha PF02002.12 gi|110667332|ref|YP_657143.1| - 0.072 12.5 0.0 0.097 12.1 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit GntR PF00392.16 gi|110667332|ref|YP_657143.1| - 0.081 12.3 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family AF-4 PF05110.8 gi|110667332|ref|YP_657143.1| - 0.096 10.5 3.4 0.097 10.5 2.3 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein DUF1634 PF07843.6 gi|110667333|ref|YP_657144.1| - 0.00012 21.6 3.4 0.00016 21.2 2.3 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1634) ATP-synt_C PF00137.16 gi|110667333|ref|YP_657144.1| - 0.12 12.3 5.3 0.21 11.5 3.7 1.4 1 0 0 1 1 1 0 ATP synthase subunit C ABC_tran PF00005.22 gi|110667334|ref|YP_657145.1| - 9e-37 126.4 0.0 9.3e-17 61.6 0.1 3.0 2 1 0 2 2 2 2 ABC transporter SMC_N PF02463.14 gi|110667334|ref|YP_657145.1| - 3e-15 56.0 2.6 4.9e-05 22.6 0.1 4.2 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|110667334|ref|YP_657145.1| - 6.7e-15 55.8 0.6 0.0055 16.7 0.0 4.2 2 2 2 4 4 4 3 AAA domain RLI PF04068.10 gi|110667334|ref|YP_657145.1| - 1.7e-12 46.6 1.1 3.3e-12 45.7 0.8 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_17 PF13207.1 gi|110667334|ref|YP_657145.1| - 5.4e-08 33.6 0.1 0.019 15.7 0.0 3.0 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|110667334|ref|YP_657145.1| - 2.2e-07 31.0 1.9 0.016 15.1 0.1 2.8 2 2 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|110667334|ref|YP_657145.1| - 3.6e-07 30.7 0.0 0.021 15.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|110667334|ref|YP_657145.1| - 3.8e-07 30.2 0.5 0.0058 16.7 0.0 3.1 3 1 0 3 3 2 2 AAA domain AAA PF00004.24 gi|110667334|ref|YP_657145.1| - 7.2e-06 26.2 0.0 0.032 14.4 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|110667334|ref|YP_657145.1| - 2e-05 24.0 0.7 0.033 13.6 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain RNA_helicase PF00910.17 gi|110667334|ref|YP_657145.1| - 2.1e-05 24.6 0.0 0.2 11.8 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_25 PF13481.1 gi|110667334|ref|YP_657145.1| - 3.4e-05 23.3 5.2 0.13 11.6 0.0 3.7 4 0 0 4 4 4 2 AAA domain AAA_14 PF13173.1 gi|110667334|ref|YP_657145.1| - 6.5e-05 22.8 0.0 0.33 10.8 0.0 3.5 3 1 0 3 3 3 1 AAA domain NACHT PF05729.7 gi|110667334|ref|YP_657145.1| - 9.1e-05 22.1 0.0 0.2 11.3 0.0 2.6 2 0 0 2 2 2 2 NACHT domain AAA_18 PF13238.1 gi|110667334|ref|YP_657145.1| - 0.00014 22.1 0.0 0.37 11.0 0.0 2.8 2 1 0 2 2 2 1 AAA domain Fer4 PF00037.22 gi|110667334|ref|YP_657145.1| - 0.00025 20.4 1.3 0.00025 20.4 0.9 3.0 3 0 0 3 3 3 1 4Fe-4S binding domain DUF258 PF03193.11 gi|110667334|ref|YP_657145.1| - 0.001 18.3 0.0 0.91 8.6 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|110667334|ref|YP_657145.1| - 0.001 18.9 0.9 1.3 8.8 0.1 3.2 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|110667334|ref|YP_657145.1| - 0.0013 18.3 0.1 1.2 8.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|110667334|ref|YP_657145.1| - 0.0034 17.2 0.1 1 9.3 0.0 2.9 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|110667334|ref|YP_657145.1| - 0.004 16.6 0.4 2.3 7.5 0.0 3.3 3 0 0 3 3 3 1 AAA-like domain AAA_5 PF07728.9 gi|110667334|ref|YP_657145.1| - 0.0049 16.5 0.0 1.4 8.6 0.0 2.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Fer4_6 PF12837.2 gi|110667334|ref|YP_657145.1| - 0.0061 16.3 14.7 0.016 15.0 1.2 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_13 PF13166.1 gi|110667334|ref|YP_657145.1| - 0.0065 14.9 0.0 0.54 8.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|110667334|ref|YP_657145.1| - 0.0072 15.4 0.0 0.14 11.1 0.0 2.6 2 1 1 3 3 3 1 AAA ATPase domain MobB PF03205.9 gi|110667334|ref|YP_657145.1| - 0.0073 16.0 2.1 1.6 8.4 0.0 2.8 3 0 0 3 3 2 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|110667334|ref|YP_657145.1| - 0.0085 15.8 1.5 3.1 7.4 0.1 2.9 3 0 0 3 3 2 0 NTPase Rad17 PF03215.10 gi|110667334|ref|YP_657145.1| - 0.011 14.4 0.1 0.21 10.2 0.0 2.6 2 1 1 3 3 3 0 Rad17 cell cycle checkpoint protein NB-ARC PF00931.17 gi|110667334|ref|YP_657145.1| - 0.015 14.1 1.5 0.3 9.8 0.1 2.3 2 0 0 2 2 2 0 NB-ARC domain Arch_ATPase PF01637.13 gi|110667334|ref|YP_657145.1| - 0.025 14.2 0.0 5 6.7 0.0 2.3 2 0 0 2 2 2 0 Archaeal ATPase MMR_HSR1 PF01926.18 gi|110667334|ref|YP_657145.1| - 0.036 14.0 0.2 5.1 7.0 0.0 2.8 2 2 0 2 2 2 0 50S ribosome-binding GTPase Miro PF08477.8 gi|110667334|ref|YP_657145.1| - 0.041 14.3 0.0 8.4 6.9 0.0 2.5 2 0 0 2 2 2 0 Miro-like protein AAA_30 PF13604.1 gi|110667334|ref|YP_657145.1| - 0.052 13.1 0.1 9.3 5.7 0.0 2.7 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|110667334|ref|YP_657145.1| - 0.055 12.8 1.4 2.1 7.7 0.1 2.5 3 0 0 3 3 2 0 SRP54-type protein, GTPase domain Mg_chelatase PF01078.16 gi|110667334|ref|YP_657145.1| - 0.073 12.2 0.0 12 5.0 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ArgK PF03308.11 gi|110667334|ref|YP_657145.1| - 0.075 11.7 1.1 3.4 6.3 0.0 2.2 2 0 0 2 2 2 0 ArgK protein Fer4_9 PF13187.1 gi|110667334|ref|YP_657145.1| - 0.12 12.7 11.2 0.22 11.8 7.8 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain AAA_28 PF13521.1 gi|110667334|ref|YP_657145.1| - 0.12 12.2 6.4 0.17 11.8 0.0 3.2 4 0 0 4 4 2 0 AAA domain UPF0079 PF02367.12 gi|110667334|ref|YP_657145.1| - 0.13 11.8 0.0 12 5.5 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 IstB_IS21 PF01695.12 gi|110667334|ref|YP_657145.1| - 0.17 11.2 0.3 13 5.1 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein Fer4_2 PF12797.2 gi|110667334|ref|YP_657145.1| - 0.2 11.6 12.9 0.28 11.1 1.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|110667334|ref|YP_657145.1| - 0.22 11.9 10.9 0.63 10.4 7.6 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain AAA_19 PF13245.1 gi|110667334|ref|YP_657145.1| - 0.23 11.2 5.3 4.1 7.2 0.2 3.4 3 0 0 3 3 3 0 Part of AAA domain DUF87 PF01935.12 gi|110667334|ref|YP_657145.1| - 0.31 10.8 1.3 16 5.2 0.1 3.0 3 1 0 3 3 3 0 Domain of unknown function DUF87 Fer4_10 PF13237.1 gi|110667334|ref|YP_657145.1| - 0.58 10.0 11.1 1.2 9.0 7.7 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|110667334|ref|YP_657145.1| - 1.2 9.0 7.9 2.6 7.9 5.5 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|110667334|ref|YP_657145.1| - 3.8 8.3 10.4 0.24 12.1 1.0 2.1 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|110667334|ref|YP_657145.1| - 9.6 7.0 13.3 0.12 12.9 2.1 2.4 2 0 0 2 2 1 0 4Fe-4S binding domain Usp PF00582.21 gi|110667335|ref|YP_657146.1| - 8.1e-21 74.6 4.8 1.5e-20 73.8 3.3 1.4 1 1 0 1 1 1 1 Universal stress protein family Peptidase_M54 PF07998.6 gi|110667336|ref|YP_657147.1| - 2.2e-22 79.8 0.0 2.8e-22 79.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Reprolysin_2 PF13574.1 gi|110667336|ref|YP_657147.1| - 1.2e-06 28.7 0.0 1.5e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|110667336|ref|YP_657147.1| - 2.7e-06 27.0 0.0 3.2e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.1 gi|110667336|ref|YP_657147.1| - 0.00011 22.7 0.0 0.00015 22.3 0.0 1.3 1 1 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M10 PF00413.19 gi|110667336|ref|YP_657147.1| - 0.00016 21.4 0.0 0.0003 20.5 0.0 1.3 1 1 0 1 1 1 1 Matrixin Reprolysin_5 PF13688.1 gi|110667336|ref|YP_657147.1| - 0.00042 20.2 0.0 0.00047 20.1 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 DUF1025 PF06262.6 gi|110667336|ref|YP_657147.1| - 0.0019 17.9 0.0 0.006 16.3 0.0 1.8 2 0 0 2 2 2 1 Possibl zinc metallo-peptidase Peptidase_M66 PF10462.4 gi|110667336|ref|YP_657147.1| - 0.0084 15.0 0.0 0.0094 14.8 0.0 1.2 1 0 0 1 1 1 1 Peptidase M66 Metallopep PF12044.3 gi|110667336|ref|YP_657147.1| - 0.0092 14.4 0.2 0.013 13.9 0.1 1.2 1 0 0 1 1 1 1 Putative peptidase family DUF4374 PF14298.1 gi|110667336|ref|YP_657147.1| - 0.046 12.2 0.0 0.061 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4374) Peptidase_M43 PF05572.8 gi|110667336|ref|YP_657147.1| - 0.062 12.8 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A UPF0146 PF03686.8 gi|110667337|ref|YP_657148.1| - 1.2e-18 67.1 0.0 1.4e-18 66.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) HAD_2 PF13419.1 gi|110667338|ref|YP_657149.1| - 1.1e-12 48.5 0.3 3.3e-11 43.7 0.2 2.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|110667338|ref|YP_657149.1| - 1e-06 28.3 1.5 1.3e-06 28.0 0.1 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|110667338|ref|YP_657149.1| - 1.5e-06 28.7 0.3 3.7e-05 24.2 0.2 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Lactamase_B PF00753.22 gi|110667339|ref|YP_657150.1| - 1.8e-18 66.9 3.3 2.5e-18 66.4 2.3 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|110667339|ref|YP_657150.1| - 0.00063 19.3 1.8 0.0011 18.5 1.2 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Tom22 PF04281.8 gi|110667340|ref|YP_657151.1| - 0.93 9.0 3.9 1.1 8.7 2.7 1.1 1 0 0 1 1 1 0 Mitochondrial import receptor subunit Tom22 TFIIA PF03153.8 gi|110667340|ref|YP_657151.1| - 4.4 7.0 8.5 4.8 6.9 5.9 1.0 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit DUF99 PF01949.11 gi|110667341|ref|YP_657152.1| - 4.1e-62 208.6 0.0 4.6e-62 208.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 UDG PF03167.14 gi|110667342|ref|YP_657153.1| - 1.9e-35 121.5 0.0 2.5e-35 121.2 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily ABC_tran PF00005.22 gi|110667344|ref|YP_657155.1| - 6.5e-32 110.6 0.1 1e-31 110.0 0.1 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110667344|ref|YP_657155.1| - 9.6e-12 45.4 0.0 3.8e-05 23.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|110667344|ref|YP_657155.1| - 4.7e-06 26.7 0.1 7.4e-06 26.0 0.1 1.3 1 0 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|110667344|ref|YP_657155.1| - 7.9e-05 21.8 0.1 0.00016 20.9 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|110667344|ref|YP_657155.1| - 0.00012 21.3 0.1 0.076 12.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|110667344|ref|YP_657155.1| - 0.0003 19.9 0.0 0.25 10.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|110667344|ref|YP_657155.1| - 0.00036 20.0 0.0 0.00072 19.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|110667344|ref|YP_657155.1| - 0.0012 18.8 1.1 0.0071 16.2 0.8 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase SbcCD_C PF13558.1 gi|110667344|ref|YP_657155.1| - 0.0012 18.6 0.3 0.029 14.2 0.2 2.6 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.1 gi|110667344|ref|YP_657155.1| - 0.0015 17.1 0.0 0.35 9.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|110667344|ref|YP_657155.1| - 0.0024 18.2 0.2 0.0043 17.4 0.1 1.5 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|110667344|ref|YP_657155.1| - 0.006 16.8 0.1 0.034 14.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|110667344|ref|YP_657155.1| - 0.015 15.4 0.2 0.029 14.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|110667344|ref|YP_657155.1| - 0.015 14.7 0.1 0.051 12.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|110667344|ref|YP_657155.1| - 0.015 14.8 0.2 0.03 13.9 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|110667344|ref|YP_657155.1| - 0.02 14.3 0.6 0.039 13.3 0.4 1.7 1 1 1 2 2 2 0 AAA-like domain AAA_28 PF13521.1 gi|110667344|ref|YP_657155.1| - 0.029 14.3 0.3 0.067 13.1 0.2 1.6 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|110667344|ref|YP_657155.1| - 0.038 14.8 0.5 0.097 13.4 0.4 1.7 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|110667344|ref|YP_657155.1| - 0.063 13.1 0.2 0.11 12.3 0.2 1.6 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|110667344|ref|YP_657155.1| - 0.12 12.8 0.1 0.3 11.5 0.1 1.6 1 0 0 1 1 1 0 Miro-like protein Arch_ATPase PF01637.13 gi|110667344|ref|YP_657155.1| - 0.13 11.9 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase Phosphonate-bd PF12974.2 gi|110667345|ref|YP_657156.1| - 2.5e-54 184.2 0.6 3e-54 183.9 0.4 1.0 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.15 gi|110667345|ref|YP_657156.1| - 0.0032 16.7 0.0 0.0048 16.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 TAT_signal PF10518.4 gi|110667345|ref|YP_657156.1| - 0.018 14.9 1.3 0.018 14.9 0.9 2.3 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence DUF4223 PF13978.1 gi|110667345|ref|YP_657156.1| - 0.034 13.8 0.7 0.45 10.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4223) NMT1 PF09084.6 gi|110667345|ref|YP_657156.1| - 0.058 12.9 0.0 0.089 12.3 0.0 1.3 1 0 0 1 1 1 0 NMT1/THI5 like GATase PF00117.23 gi|110667346|ref|YP_657157.1| - 5.2e-33 114.1 0.0 6.7e-33 113.7 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|110667346|ref|YP_657157.1| - 5.3e-08 32.7 0.0 1.8e-07 30.9 0.0 1.7 1 1 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|110667346|ref|YP_657157.1| - 1.3e-07 31.3 0.0 3e-07 30.1 0.0 1.7 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|110667346|ref|YP_657157.1| - 6.7e-06 25.7 0.2 4.3e-05 23.0 0.1 2.2 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|110667346|ref|YP_657157.1| - 0.0097 15.3 0.0 0.033 13.6 0.0 1.7 2 0 0 2 2 2 1 DJ-1/PfpI family GATase_5 PF13507.1 gi|110667346|ref|YP_657157.1| - 0.054 12.3 0.0 0.58 9.0 0.0 2.4 2 1 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain PDT PF00800.13 gi|110667347|ref|YP_657158.1| - 5.8e-45 153.0 0.2 7.5e-45 152.6 0.2 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|110667347|ref|YP_657158.1| - 3.1e-07 29.7 0.0 1.2e-06 27.8 0.0 2.0 2 0 0 2 2 2 1 ACT domain OCD_Mu_crystall PF02423.10 gi|110667348|ref|YP_657159.1| - 2.6e-89 299.0 1.4 3.1e-89 298.8 1.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|110667348|ref|YP_657159.1| - 2.5e-05 24.3 0.0 4e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.17 gi|110667348|ref|YP_657159.1| - 0.062 13.8 0.1 0.14 12.6 0.1 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Cpn60_TCP1 PF00118.19 gi|110667349|ref|YP_657160.1| - 2.2e-151 504.8 8.5 2.5e-151 504.6 5.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family CSD PF00313.17 gi|110667350|ref|YP_657161.1| - 7.2e-20 70.5 0.2 9.4e-20 70.1 0.1 1.2 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.6 gi|110667350|ref|YP_657161.1| - 0.061 12.8 2.0 0.094 12.2 1.4 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.1 gi|110667350|ref|YP_657161.1| - 0.096 12.4 0.1 0.13 12.0 0.1 1.3 1 0 0 1 1 1 0 S1-like VanZ PF04892.7 gi|110667351|ref|YP_657162.1| - 3.3e-09 36.7 1.7 4.8e-09 36.2 1.2 1.3 1 1 0 1 1 1 1 VanZ like family DUF91 PF01939.11 gi|110667352|ref|YP_657163.1| - 7e-64 215.1 0.0 8.6e-64 214.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 PDDEXK_4 PF14281.1 gi|110667352|ref|YP_657163.1| - 0.013 15.3 0.0 0.019 14.8 0.0 1.3 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily Ribosomal_L16 PF00252.13 gi|110667353|ref|YP_657164.1| - 1.1e-28 99.6 0.0 1.2e-28 99.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e RimK PF08443.6 gi|110667354|ref|YP_657165.1| - 2.5e-30 105.3 0.0 3.2e-30 105.0 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|110667354|ref|YP_657165.1| - 1.4e-17 64.0 0.0 2e-17 63.5 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|110667354|ref|YP_657165.1| - 1.5e-09 37.2 0.0 2.2e-09 36.7 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|110667354|ref|YP_657165.1| - 2.1e-08 33.8 0.0 3.4e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.1 gi|110667354|ref|YP_657165.1| - 2.7e-08 32.9 0.0 3.5e-08 32.5 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|110667354|ref|YP_657165.1| - 4.7e-08 33.0 0.0 1.1e-07 31.9 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.1 gi|110667354|ref|YP_657165.1| - 0.0022 17.1 0.0 1.1 8.3 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp CPSase_L_D2 PF02786.12 gi|110667354|ref|YP_657165.1| - 0.0025 17.1 0.0 0.0041 16.4 0.0 1.5 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain TTL PF03133.10 gi|110667354|ref|YP_657165.1| - 0.0028 16.6 0.0 1.5 7.6 0.0 2.3 2 0 0 2 2 2 2 Tubulin-tyrosine ligase family ATP-grasp_5 PF13549.1 gi|110667354|ref|YP_657165.1| - 0.066 12.4 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain HSP20 PF00011.16 gi|110667355|ref|YP_657166.1| - 5e-08 32.7 0.0 1.4e-06 28.0 0.0 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|110667355|ref|YP_657166.1| - 4.6e-06 26.3 0.3 5.5e-06 26.1 0.2 1.2 1 0 0 1 1 1 1 GvpH Gp_dh_C PF02800.15 gi|110667356|ref|YP_657167.1| - 3.7e-58 195.4 0.0 5.2e-58 194.9 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|110667356|ref|YP_657167.1| - 5.5e-49 166.0 0.0 7.9e-49 165.4 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|110667356|ref|YP_657167.1| - 0.00095 19.0 0.1 0.0023 17.8 0.0 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|110667356|ref|YP_657167.1| - 0.016 15.6 0.0 0.046 14.1 0.0 1.8 1 1 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain PGK PF00162.14 gi|110667357|ref|YP_657168.1| - 1.8e-107 359.2 0.9 2.1e-107 359.0 0.6 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Lum_binding PF00677.12 gi|110667358|ref|YP_657169.1| - 3.4e-35 119.7 0.5 4.8e-19 68.0 0.0 2.1 2 0 0 2 2 2 2 Lumazine binding domain PrsW-protease PF13367.1 gi|110667359|ref|YP_657170.1| - 2.8e-44 150.5 12.8 2.8e-44 150.5 8.9 1.7 2 0 0 2 2 2 1 Protease prsW family DUF402 PF04167.8 gi|110667360|ref|YP_657171.1| - 3.4e-22 78.0 0.3 7.4e-22 76.9 0.2 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF402) 4HBT PF03061.17 gi|110667361|ref|YP_657172.1| - 3.8e-17 62.1 0.0 5.5e-17 61.6 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|110667361|ref|YP_657172.1| - 0.095 13.1 0.0 0.11 12.8 0.0 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily Gly-zipper_OmpA PF13436.1 gi|110667363|ref|YP_657174.1| - 1.4e-05 24.7 3.0 1.7e-05 24.4 2.0 1.1 1 0 0 1 1 1 1 Glycine-zipper containing OmpA-like membrane domain Rick_17kDa_Anti PF05433.10 gi|110667363|ref|YP_657174.1| - 0.0017 17.9 6.5 0.17 11.5 0.5 2.2 2 0 0 2 2 2 2 Glycine zipper 2TM domain TraT PF05818.7 gi|110667363|ref|YP_657174.1| - 0.012 15.0 1.0 0.015 14.6 0.7 1.1 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein DUF1183 PF06682.7 gi|110667363|ref|YP_657174.1| - 0.015 14.8 0.1 0.017 14.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1183) Gly-zipper_Omp PF13488.1 gi|110667363|ref|YP_657174.1| - 0.042 13.4 12.1 0.099 12.3 8.4 1.7 1 1 0 1 1 1 0 Glycine zipper DUF3482 PF11981.3 gi|110667363|ref|YP_657174.1| - 0.15 11.2 2.9 0.17 11.0 2.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) Gly-zipper_YMGG PF13441.1 gi|110667363|ref|YP_657174.1| - 0.34 10.4 12.2 0.63 9.5 8.0 1.7 1 1 0 1 1 1 0 YMGG-like Gly-zipper Romo1 PF10247.4 gi|110667363|ref|YP_657174.1| - 0.41 10.8 3.9 0.82 9.9 1.1 2.0 1 1 1 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 CbiA PF01656.18 gi|110667365|ref|YP_657176.1| - 7.6e-23 80.9 0.6 9.2e-23 80.6 0.4 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|110667365|ref|YP_657176.1| - 5e-07 29.1 0.0 0.00019 20.7 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|110667365|ref|YP_657176.1| - 2.9e-06 27.2 0.1 4.5e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|110667365|ref|YP_657176.1| - 9e-05 21.6 0.6 0.00034 19.8 0.4 1.8 1 1 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.1 gi|110667365|ref|YP_657176.1| - 0.0018 17.6 1.0 0.0026 17.1 0.2 1.6 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|110667365|ref|YP_657176.1| - 0.0022 17.0 0.4 0.012 14.7 0.6 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.6 gi|110667365|ref|YP_657176.1| - 0.015 14.3 0.5 0.026 13.6 0.4 1.3 1 0 0 1 1 1 0 VirC1 protein AAA_30 PF13604.1 gi|110667365|ref|YP_657176.1| - 0.043 13.3 0.5 0.2 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain PIF1 PF05970.9 gi|110667365|ref|YP_657176.1| - 0.087 11.7 0.1 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase AAA_26 PF13500.1 gi|110667365|ref|YP_657176.1| - 0.13 11.8 0.6 0.64 9.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain GATase_3 PF07685.9 gi|110667366|ref|YP_657177.1| - 2.6e-30 105.1 0.1 2.4e-29 101.9 0.0 2.2 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|110667366|ref|YP_657177.1| - 3.8e-24 85.1 0.2 5.8e-24 84.5 0.1 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|110667366|ref|YP_657177.1| - 1.5e-18 67.1 1.0 4.1e-18 65.6 0.7 1.8 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|110667366|ref|YP_657177.1| - 0.00058 19.5 0.0 0.44 10.2 0.0 3.2 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B GATase PF00117.23 gi|110667366|ref|YP_657177.1| - 0.014 14.9 0.0 0.04 13.3 0.0 1.7 2 0 0 2 2 2 0 Glutamine amidotransferase class-I CobA_CobO_BtuR PF02572.10 gi|110667367|ref|YP_657178.1| - 5.8e-56 188.8 0.0 6.9e-56 188.5 0.0 1.1 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP IstB_IS21 PF01695.12 gi|110667367|ref|YP_657178.1| - 0.1 12.0 1.9 1.9 7.8 0.2 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein CbiA PF01656.18 gi|110667367|ref|YP_657178.1| - 0.15 11.4 0.1 0.25 10.7 0.1 1.3 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain CbiZ PF01955.13 gi|110667368|ref|YP_657179.1| - 9e-34 116.9 5.5 6.6e-29 101.0 3.7 2.4 1 1 1 2 2 2 2 Adenosylcobinamide amidohydrolase Aminotran_1_2 PF00155.16 gi|110667369|ref|YP_657180.1| - 6.7e-29 100.9 0.0 7.9e-29 100.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II NeA_P2 PF12312.3 gi|110667369|ref|YP_657180.1| - 0.013 14.7 0.1 0.021 14.0 0.0 1.3 1 0 0 1 1 1 0 Nepovirus subgroup A polyprotein DegT_DnrJ_EryC1 PF01041.12 gi|110667369|ref|YP_657180.1| - 0.02 13.9 1.2 0.054 12.5 0.2 1.8 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family DBI_PRT PF02277.12 gi|110667370|ref|YP_657181.1| - 1.5e-16 60.4 0.4 2.4e-16 59.7 0.2 1.4 1 1 0 1 1 1 1 Phosphoribosyltransferase NTP_transf_3 PF12804.2 gi|110667371|ref|YP_657182.1| - 5e-12 46.1 0.1 5e-12 46.1 0.1 1.6 2 0 0 2 2 2 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|110667371|ref|YP_657182.1| - 0.0055 16.3 0.0 0.0085 15.7 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase CofC PF01983.11 gi|110667371|ref|YP_657182.1| - 0.019 13.9 0.0 0.036 13.0 0.0 1.5 1 1 0 1 1 1 0 Guanylyl transferase CofC like NTP_transferase PF00483.18 gi|110667371|ref|YP_657182.1| - 0.058 12.6 1.4 0.2 10.9 0.0 1.9 2 0 0 2 2 2 0 Nucleotidyl transferase CobS PF02654.10 gi|110667372|ref|YP_657183.1| - 9.9e-38 130.0 12.6 1.2e-37 129.7 8.7 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase DUF4400 PF14348.1 gi|110667372|ref|YP_657183.1| - 0.012 15.0 0.7 0.012 15.0 0.5 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4400) CobD_Cbib PF03186.8 gi|110667373|ref|YP_657184.1| - 6.1e-77 258.5 9.9 7.2e-77 258.3 6.8 1.1 1 0 0 1 1 1 1 CobD/Cbib protein DUF1049 PF06305.6 gi|110667373|ref|YP_657184.1| - 3.6 7.1 6.4 4.3 6.8 0.6 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1049) HAD_2 PF13419.1 gi|110667374|ref|YP_657185.1| - 2.1e-19 70.3 0.0 2.5e-19 70.1 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|110667374|ref|YP_657185.1| - 8.2e-08 32.9 0.2 4.9e-07 30.3 0.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|110667374|ref|YP_657185.1| - 0.00015 21.4 0.0 0.00028 20.5 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like zf-ribbon_3 PF13248.1 gi|110667375|ref|YP_657186.1| - 1e-09 37.2 12.3 9.3e-05 21.5 2.8 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|110667375|ref|YP_657186.1| - 3.4e-08 33.1 9.6 9.5e-08 31.7 6.8 1.7 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|110667375|ref|YP_657186.1| - 3.4e-08 32.7 13.3 0.0003 20.1 3.6 2.4 2 0 0 2 2 2 2 zinc-ribbon domain RHH_1 PF01402.16 gi|110667375|ref|YP_657186.1| - 0.00041 20.1 0.4 0.032 14.1 0.1 2.4 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family UPF0547 PF10571.4 gi|110667375|ref|YP_657186.1| - 0.0025 17.4 5.3 0.6 9.8 0.2 3.2 3 0 0 3 3 3 1 Uncharacterised protein family UPF0547 Cys_rich_KTR PF14205.1 gi|110667375|ref|YP_657186.1| - 0.0038 16.6 2.8 1.4 8.4 0.0 2.6 2 1 0 2 2 2 2 Cysteine-rich KTR Zn-ribbon_8 PF09723.5 gi|110667375|ref|YP_657186.1| - 0.0057 16.5 9.4 1.8 8.5 0.1 3.5 2 1 1 3 3 3 2 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|110667375|ref|YP_657186.1| - 0.0064 16.1 9.1 1.3 8.8 1.4 3.8 3 1 0 3 3 3 2 Nudix N-terminal Zn_Tnp_IS91 PF14319.1 gi|110667375|ref|YP_657186.1| - 0.01 15.3 5.1 0.018 14.5 3.5 1.4 1 0 0 1 1 1 0 Transposase zinc-binding domain PolC_DP2 PF03833.8 gi|110667375|ref|YP_657186.1| - 0.011 13.3 4.5 0.015 13.0 3.1 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-C3HC4_3 PF13920.1 gi|110667375|ref|YP_657186.1| - 0.014 15.0 6.0 0.39 10.4 0.4 2.2 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Auto_anti-p27 PF06677.7 gi|110667375|ref|YP_657186.1| - 0.032 13.9 7.0 0.062 13.0 1.6 2.4 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RHH_2 PF03693.9 gi|110667375|ref|YP_657186.1| - 0.037 14.1 0.0 0.13 12.4 0.0 1.9 2 0 0 2 2 1 0 Uncharacterised protein family (UPF0156) DUF2191 PF09957.4 gi|110667375|ref|YP_657186.1| - 0.082 12.7 3.9 0.29 10.9 0.2 2.6 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2191) DNA_ligase_ZBD PF03119.11 gi|110667375|ref|YP_657186.1| - 0.12 12.1 2.9 6.7 6.4 0.1 2.8 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF3080 PF11279.3 gi|110667375|ref|YP_657186.1| - 0.15 11.1 0.0 0.22 10.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3080) NOB1_Zn_bind PF08772.6 gi|110667375|ref|YP_657186.1| - 0.21 11.4 11.4 3.6 7.4 0.3 2.9 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF164 PF02591.10 gi|110667375|ref|YP_657186.1| - 0.25 11.2 7.6 12 5.8 0.0 3.4 2 1 1 3 3 3 0 Putative zinc ribbon domain DUF2981 PF11200.3 gi|110667375|ref|YP_657186.1| - 0.25 10.3 6.1 0.67 8.9 4.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2981) TMEM247 PF15444.1 gi|110667375|ref|YP_657186.1| - 0.28 10.9 1.3 1.3 8.8 0.2 1.9 1 1 1 2 2 2 0 Transmembrane protein 247 OrfB_Zn_ribbon PF07282.6 gi|110667375|ref|YP_657186.1| - 0.43 10.2 10.9 0.072 12.7 1.7 2.8 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF2321 PF10083.4 gi|110667375|ref|YP_657186.1| - 0.48 9.9 3.8 0.32 10.4 1.4 1.6 2 0 0 2 2 1 0 Uncharacterized protein conserved in bacteria (DUF2321) zinc-ribbons_6 PF07191.7 gi|110667375|ref|YP_657186.1| - 0.66 9.8 8.6 6.5 6.6 6.1 2.1 1 1 0 1 1 1 0 zinc-ribbons zf-NADH-PPase PF09297.6 gi|110667375|ref|YP_657186.1| - 0.72 9.4 12.4 0.86 9.1 0.6 2.9 3 0 0 3 3 2 0 NADH pyrophosphatase zinc ribbon domain Ribosomal_L32p PF01783.18 gi|110667375|ref|YP_657186.1| - 1.1 9.4 7.3 0.26 11.4 1.4 2.5 1 1 2 3 3 3 0 Ribosomal L32p protein family zf-ISL3 PF14690.1 gi|110667375|ref|YP_657186.1| - 1.2 9.1 8.8 5.4 7.1 0.5 3.3 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ogr_Delta PF04606.7 gi|110667375|ref|YP_657186.1| - 1.3 8.7 7.7 1.7 8.3 0.3 3.3 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger Cript PF10235.4 gi|110667375|ref|YP_657186.1| - 2.6 8.4 9.3 22 5.4 5.9 2.6 1 1 1 2 2 2 0 Microtubule-associated protein CRIPT NRDD PF13597.1 gi|110667375|ref|YP_657186.1| - 2.8 5.9 7.6 7.2 4.5 5.2 1.7 1 1 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DUF1610 PF07754.6 gi|110667375|ref|YP_657186.1| - 3.3 7.9 14.2 16 5.7 4.8 3.3 2 1 0 2 2 2 0 Domain of unknown function (DUF1610) ADK_lid PF05191.9 gi|110667375|ref|YP_657186.1| - 3.9 7.2 6.6 51 3.6 0.0 3.4 3 0 0 3 3 3 0 Adenylate kinase, active site lid Sgf11 PF08209.6 gi|110667375|ref|YP_657186.1| - 3.9 6.8 9.9 17 4.7 0.0 3.3 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) Prim_Zn_Ribbon PF08273.7 gi|110667375|ref|YP_657186.1| - 4.5 7.4 14.1 1 9.4 5.6 2.6 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase DUF1272 PF06906.6 gi|110667375|ref|YP_657186.1| - 5.6 6.8 9.3 0.31 10.9 0.7 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) Cys_rich_CPXG PF14255.1 gi|110667375|ref|YP_657186.1| - 9.1 6.2 9.2 32 4.4 3.9 2.7 2 1 0 2 2 2 0 Cysteine-rich CPXCG RHH_1 PF01402.16 gi|110667376|ref|YP_657187.1| - 6.2e-08 32.2 0.1 7.9e-08 31.8 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family CHASE3 PF05227.8 gi|110667376|ref|YP_657187.1| - 0.16 11.6 1.0 0.16 11.6 0.7 1.1 1 0 0 1 1 1 0 CHASE3 domain FtsZ_C PF12327.3 gi|110667377|ref|YP_657188.1| - 5.4e-35 119.3 0.7 5.4e-35 119.3 0.5 2.7 2 1 1 3 3 3 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|110667377|ref|YP_657188.1| - 8.6e-33 113.9 2.6 4e-32 111.8 1.8 2.0 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain ThiF PF00899.16 gi|110667377|ref|YP_657188.1| - 0.046 13.5 0.1 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 ThiF family Methyltransf_11 PF08241.7 gi|110667378|ref|YP_657189.1| - 2.7e-14 53.4 0.0 7.6e-14 51.9 0.0 1.8 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|110667378|ref|YP_657189.1| - 4.2e-13 49.1 0.0 5.4e-13 48.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|110667378|ref|YP_657189.1| - 1.2e-09 38.1 0.0 1.9e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|110667378|ref|YP_657189.1| - 2.9e-09 37.2 0.0 6.4e-09 36.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|110667378|ref|YP_657189.1| - 3.1e-07 29.7 0.0 4.7e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|110667378|ref|YP_657189.1| - 3.7e-07 30.5 0.1 1.3e-06 28.8 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|110667378|ref|YP_657189.1| - 2.5e-06 28.0 0.9 1.5e-05 25.5 0.6 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|110667378|ref|YP_657189.1| - 1.2e-05 25.2 9.6 8.9e-05 22.5 0.0 2.6 2 1 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|110667378|ref|YP_657189.1| - 0.0022 17.4 0.3 0.0062 15.9 0.0 1.8 2 1 0 2 2 2 1 Methyltransferase small domain RrnaAD PF00398.15 gi|110667378|ref|YP_657189.1| - 0.0041 16.1 0.0 0.0079 15.2 0.0 1.4 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase FtsJ PF01728.14 gi|110667378|ref|YP_657189.1| - 0.005 16.8 0.0 0.0073 16.3 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase PCMT PF01135.14 gi|110667378|ref|YP_657189.1| - 0.0072 15.8 0.0 0.031 13.8 0.0 1.9 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.7 gi|110667378|ref|YP_657189.1| - 0.013 14.9 0.0 0.021 14.1 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.1 gi|110667378|ref|YP_657189.1| - 0.054 13.1 0.0 0.11 12.2 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain PrmA PF06325.8 gi|110667378|ref|YP_657189.1| - 0.075 12.1 0.2 0.19 10.8 0.0 1.6 1 1 1 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) AP_endonuc_2 PF01261.19 gi|110667379|ref|YP_657190.1| - 5.1e-25 88.0 0.3 9e-25 87.2 0.1 1.4 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Aldedh PF00171.17 gi|110667380|ref|YP_657191.1| - 6.6e-140 466.5 0.0 7.4e-140 466.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family TrkA_C PF02080.16 gi|110667381|ref|YP_657192.1| - 2.3e-19 68.7 3.8 3.4e-09 36.1 0.1 3.6 4 0 0 4 4 4 2 TrkA-C domain TrkA_N PF02254.13 gi|110667381|ref|YP_657192.1| - 1e-18 67.3 10.6 4.3e-14 52.4 1.9 2.8 3 0 0 3 3 3 2 TrkA-N domain Response_reg PF00072.19 gi|110667381|ref|YP_657192.1| - 0.00062 19.7 0.9 0.17 11.9 0.1 2.9 2 1 0 2 2 2 2 Response regulator receiver domain XdhC_C PF13478.1 gi|110667381|ref|YP_657192.1| - 0.029 14.6 0.1 0.16 12.2 0.1 2.2 2 0 0 2 2 2 0 XdhC Rossmann domain AlaDh_PNT_C PF01262.16 gi|110667381|ref|YP_657192.1| - 0.052 13.1 0.1 0.097 12.2 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.16 gi|110667381|ref|YP_657192.1| - 0.059 13.1 0.6 0.31 10.8 0.2 2.1 2 0 0 2 2 2 0 ThiF family RIO1 PF01163.17 gi|110667382|ref|YP_657193.1| - 1.4e-45 154.9 0.4 2.1e-45 154.4 0.3 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|110667382|ref|YP_657193.1| - 6.4e-26 90.2 0.0 1.4e-25 89.1 0.0 1.6 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|110667382|ref|YP_657193.1| - 0.0026 17.5 0.5 0.61 9.7 0.0 2.7 1 1 1 2 2 2 2 Phosphotransferase enzyme family ABC_tran PF00005.22 gi|110667383|ref|YP_657194.1| - 2.6e-29 102.2 0.0 3.3e-28 98.6 0.0 2.1 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|110667383|ref|YP_657194.1| - 4.3e-09 36.7 0.1 2.6e-06 27.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain TOBE PF03459.12 gi|110667383|ref|YP_657194.1| - 6e-07 29.4 3.9 3.7e-05 23.7 0.2 2.6 2 1 0 2 2 2 1 TOBE domain TOBE_2 PF08402.5 gi|110667383|ref|YP_657194.1| - 2.3e-06 27.4 1.4 2e-05 24.4 0.1 2.7 2 1 0 2 2 2 1 TOBE domain SMC_N PF02463.14 gi|110667383|ref|YP_657194.1| - 0.00019 20.7 0.1 0.55 9.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|110667383|ref|YP_657194.1| - 0.00043 20.3 0.3 0.0012 18.8 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|110667383|ref|YP_657194.1| - 0.00062 19.2 0.1 0.0014 18.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|110667383|ref|YP_657194.1| - 0.0027 17.4 0.7 0.0097 15.6 0.2 2.3 2 1 0 2 2 2 1 Part of AAA domain DUF258 PF03193.11 gi|110667383|ref|YP_657194.1| - 0.0057 15.8 0.4 0.038 13.1 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|110667383|ref|YP_657194.1| - 0.0062 16.4 0.8 0.054 13.3 0.5 2.3 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|110667383|ref|YP_657194.1| - 0.0082 16.2 0.2 0.052 13.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|110667383|ref|YP_657194.1| - 0.0095 15.5 0.1 0.063 12.8 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|110667383|ref|YP_657194.1| - 0.012 14.9 0.0 0.07 12.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|110667383|ref|YP_657194.1| - 0.023 15.5 0.1 0.036 14.8 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|110667383|ref|YP_657194.1| - 0.025 14.9 0.0 0.038 14.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|110667383|ref|YP_657194.1| - 0.032 13.3 0.0 4.6 6.1 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain MobB PF03205.9 gi|110667383|ref|YP_657194.1| - 0.065 12.9 0.2 0.18 11.5 0.1 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|110667383|ref|YP_657194.1| - 0.12 12.5 0.0 0.33 11.1 0.0 1.8 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|110667383|ref|YP_657194.1| - 0.2 11.3 0.0 0.33 10.6 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase BPD_transp_1 PF00528.17 gi|110667384|ref|YP_657195.1| - 7.4e-19 67.9 13.5 7.4e-19 67.9 9.4 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4212 PF13937.1 gi|110667384|ref|YP_657195.1| - 0.096 12.6 2.5 0.25 11.3 0.6 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4212) SBP_bac_11 PF13531.1 gi|110667385|ref|YP_657196.1| - 2.1e-19 70.1 0.1 3.1e-19 69.5 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF4251 PF14059.1 gi|110667385|ref|YP_657196.1| - 0.015 15.1 0.1 0.036 13.8 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4251) Ribosomal_L15e PF00827.12 gi|110667386|ref|YP_657197.1| - 6.4e-82 273.7 4.8 7.3e-82 273.5 3.3 1.0 1 0 0 1 1 1 1 Ribosomal L15 ThiF PF00899.16 gi|110667387|ref|YP_657198.1| - 1.1e-43 148.3 0.1 1.5e-43 147.9 0.1 1.2 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|110667387|ref|YP_657198.1| - 3e-31 106.8 0.1 4.8e-31 106.1 0.1 1.4 1 0 0 1 1 1 1 MoeZ/MoeB domain Shikimate_DH PF01488.15 gi|110667387|ref|YP_657198.1| - 0.00075 19.6 0.1 0.0015 18.6 0.1 1.4 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|110667387|ref|YP_657198.1| - 0.0028 16.6 0.1 0.0051 15.8 0.1 1.4 1 1 0 1 1 1 1 Saccharopine dehydrogenase ApbA PF02558.11 gi|110667387|ref|YP_657198.1| - 0.013 14.9 0.0 0.019 14.3 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.1 gi|110667387|ref|YP_657198.1| - 0.02 15.1 0.0 0.036 14.3 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding XdhC_C PF13478.1 gi|110667387|ref|YP_657198.1| - 0.05 13.9 0.0 0.076 13.3 0.0 1.2 1 0 0 1 1 1 0 XdhC Rossmann domain UbiA PF01040.13 gi|110667388|ref|YP_657199.1| - 2.9e-29 102.0 20.8 3.6e-29 101.7 14.4 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF1643 PF07799.7 gi|110667389|ref|YP_657200.1| - 1.2e-41 141.6 0.0 1.4e-41 141.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1643) DUF134 PF02001.11 gi|110667390|ref|YP_657201.1| - 1.2e-05 25.1 0.0 1.4e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.7 gi|110667390|ref|YP_657201.1| - 0.00068 19.0 0.0 0.00093 18.6 0.0 1.1 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_40 PF14493.1 gi|110667390|ref|YP_657201.1| - 0.0018 18.4 0.1 0.0021 18.2 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|110667390|ref|YP_657201.1| - 0.025 14.6 0.0 0.035 14.0 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|110667390|ref|YP_657201.1| - 0.079 12.2 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_10 PF04967.7 gi|110667390|ref|YP_657201.1| - 0.14 11.8 0.0 0.26 10.8 0.0 1.5 2 0 0 2 2 2 0 HTH DNA binding domain SnoaL_2 PF12680.2 gi|110667391|ref|YP_657202.1| - 1.1e-08 35.3 0.2 1.4e-08 35.0 0.2 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.1 gi|110667391|ref|YP_657202.1| - 6.3e-05 23.1 0.2 7.4e-05 22.9 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL PF07366.7 gi|110667391|ref|YP_657202.1| - 0.00069 19.2 0.1 0.0008 18.9 0.1 1.1 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_4 PF13577.1 gi|110667391|ref|YP_657202.1| - 0.004 17.0 0.1 0.0047 16.8 0.1 1.2 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_3 PF13474.1 gi|110667391|ref|YP_657202.1| - 0.015 15.2 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 SnoaL-like domain NTF2 PF02136.15 gi|110667391|ref|YP_657202.1| - 0.04 14.2 0.2 0.05 13.9 0.1 1.2 1 0 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain CBS PF00571.23 gi|110667392|ref|YP_657203.1| - 3.2e-25 87.6 1.1 1e-12 47.5 0.0 2.2 2 0 0 2 2 2 2 CBS domain ABC_tran PF00005.22 gi|110667393|ref|YP_657204.1| - 1.6e-37 128.8 0.0 4e-37 127.5 0.0 1.7 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|110667393|ref|YP_657204.1| - 2.3e-13 49.9 0.0 6.1e-13 48.5 0.0 1.8 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.1 gi|110667393|ref|YP_657204.1| - 7.8e-07 29.3 0.5 0.012 15.6 0.0 2.7 2 1 1 3 3 3 2 AAA domain TOBE PF03459.12 gi|110667393|ref|YP_657204.1| - 0.00019 21.4 0.0 0.11 12.6 0.0 2.7 2 0 0 2 2 2 1 TOBE domain SMC_N PF02463.14 gi|110667393|ref|YP_657204.1| - 0.0007 18.8 1.0 0.15 11.2 0.1 2.5 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|110667393|ref|YP_657204.1| - 0.00089 18.4 0.1 0.06 12.3 0.0 2.7 3 0 0 3 3 3 1 AAA ATPase domain AAA_16 PF13191.1 gi|110667393|ref|YP_657204.1| - 0.0034 17.3 1.4 0.0063 16.5 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|110667393|ref|YP_657204.1| - 0.0081 15.3 0.0 0.016 14.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|110667393|ref|YP_657204.1| - 0.013 14.9 0.0 0.036 13.5 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.24 gi|110667393|ref|YP_657204.1| - 0.019 15.1 0.2 0.1 12.7 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|110667393|ref|YP_657204.1| - 0.026 14.3 0.0 0.11 12.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|110667393|ref|YP_657204.1| - 0.029 14.5 1.6 0.13 12.3 1.0 2.1 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|110667393|ref|YP_657204.1| - 0.035 12.8 0.0 0.053 12.2 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_25 PF13481.1 gi|110667393|ref|YP_657204.1| - 0.073 12.4 0.0 0.21 10.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|110667393|ref|YP_657204.1| - 0.073 12.5 0.0 0.21 11.0 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Miro PF08477.8 gi|110667393|ref|YP_657204.1| - 0.16 12.4 0.3 0.5 10.8 0.0 2.0 3 0 0 3 3 1 0 Miro-like protein BPD_transp_1 PF00528.17 gi|110667394|ref|YP_657205.1| - 1.9e-18 66.6 24.2 1.9e-18 66.6 16.8 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|110667395|ref|YP_657206.1| - 6.4e-14 51.8 18.6 6.4e-14 51.8 12.9 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|110667396|ref|YP_657207.1| - 4.5e-29 102.0 0.0 6.9e-29 101.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|110667396|ref|YP_657207.1| - 9.2e-19 67.7 0.1 1.3e-18 67.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|110667396|ref|YP_657207.1| - 6.3e-05 22.8 0.1 0.00076 19.2 0.0 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|110667396|ref|YP_657207.1| - 0.0032 17.3 0.9 0.0062 16.4 0.7 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_11 PF13531.1 gi|110667396|ref|YP_657207.1| - 0.024 14.2 0.0 0.081 12.5 0.0 1.9 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein UCR_Fe-S_N PF10399.4 gi|110667396|ref|YP_657207.1| - 0.07 12.3 0.1 0.14 11.3 0.1 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal tRNA_anti-codon PF01336.20 gi|110667397|ref|YP_657208.1| - 1.6e-28 98.3 8.6 2.8e-11 43.1 0.1 4.2 4 0 0 4 4 4 3 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|110667397|ref|YP_657208.1| - 0.0027 17.4 0.2 1.2 8.8 0.0 3.3 3 0 0 3 3 3 1 Replication factor-A C terminal domain CBFD_NFYB_HMF PF00808.18 gi|110667398|ref|YP_657209.1| - 1.4e-24 85.8 0.6 1.8e-14 53.5 0.1 2.0 2 0 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|110667398|ref|YP_657209.1| - 1.1e-14 54.2 1.0 1.3e-10 41.2 0.3 2.1 2 0 0 2 2 2 2 Core histone H2A/H2B/H3/H4 CENP-S PF15630.1 gi|110667398|ref|YP_657209.1| - 0.00042 20.4 0.1 0.00068 19.7 0.1 1.3 1 0 0 1 1 1 1 Kinetochore component CENP-S TFIID_20kDa PF03847.8 gi|110667398|ref|YP_657209.1| - 0.002 18.3 0.2 0.0033 17.6 0.1 1.3 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TFIID-31kDa PF02291.10 gi|110667398|ref|YP_657209.1| - 0.05 13.3 0.3 0.089 12.5 0.2 1.4 1 0 0 1 1 1 0 Transcription initiation factor IID, 31kD subunit Hist_deacetyl PF00850.14 gi|110667399|ref|YP_657210.1| - 7.8e-83 278.3 0.0 9.5e-83 278.0 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain tRNA_NucTransf2 PF09249.6 gi|110667400|ref|YP_657211.1| - 1.1e-43 147.7 0.0 1.8e-43 147.0 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|110667400|ref|YP_657211.1| - 3.2e-13 49.8 0.0 7.5e-13 48.6 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF457 PF04307.9 gi|110667401|ref|YP_657212.1| - 3.6e-14 52.3 8.6 4.6e-14 52.0 5.9 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Borrelia_P13 PF05628.7 gi|110667401|ref|YP_657212.1| - 0.15 11.8 0.6 0.52 10.1 0.3 1.8 2 0 0 2 2 2 0 Borrelia membrane protein P13 Yip1 PF04893.12 gi|110667401|ref|YP_657212.1| - 2.7 7.4 12.1 7.3 6.0 7.6 2.2 1 1 1 2 2 2 0 Yip1 domain NMT1 PF09084.6 gi|110667404|ref|YP_657215.1| - 1.5e-10 41.0 2.0 5.1e-10 39.3 0.2 2.2 2 1 0 2 2 2 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|110667404|ref|YP_657215.1| - 4.2e-08 32.8 1.8 8.1e-08 31.9 1.2 1.4 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_2 PF13379.1 gi|110667404|ref|YP_657215.1| - 0.0036 16.7 0.7 0.038 13.3 0.4 2.1 1 1 1 2 2 2 2 NMT1-like family SBP_bac_3 PF00497.15 gi|110667404|ref|YP_657215.1| - 0.0044 16.2 0.3 0.01 15.0 0.1 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 DUF1850 PF08905.6 gi|110667405|ref|YP_657216.1| - 3.4e-23 81.2 0.0 5e-23 80.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) DctM PF06808.7 gi|110667406|ref|YP_657217.1| - 4.2e-79 266.0 44.7 2.9e-53 180.9 15.4 3.7 4 0 0 4 4 4 2 DctM-like transporters FAD_binding_7 PF03441.9 gi|110667407|ref|YP_657218.1| - 1.7e-73 247.2 1.2 1.7e-73 247.2 0.9 1.4 2 0 0 2 2 2 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|110667407|ref|YP_657218.1| - 3.1e-15 56.3 0.0 1.7e-11 44.1 0.1 2.7 3 0 0 3 3 3 2 DNA photolyase Cytochrom_CIII PF02085.11 gi|110667408|ref|YP_657219.1| - 0.055 13.5 0.4 0.056 13.5 0.3 1.0 1 0 0 1 1 1 0 Class III cytochrome C family HypA PF01155.14 gi|110667408|ref|YP_657219.1| - 0.12 12.0 0.7 0.14 11.8 0.5 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family UPF0047 PF01894.12 gi|110667409|ref|YP_657220.1| - 4e-35 120.1 0.2 4.8e-35 119.9 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 AAA_18 PF13238.1 gi|110667410|ref|YP_657221.1| - 0.0056 16.9 0.0 0.0083 16.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|110667410|ref|YP_657221.1| - 0.0069 16.2 0.5 0.018 14.8 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|110667410|ref|YP_657221.1| - 0.0085 16.0 0.2 0.012 15.6 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|110667410|ref|YP_657221.1| - 0.038 14.8 0.0 0.046 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|110667410|ref|YP_657221.1| - 0.084 13.0 0.0 0.1 12.7 0.0 1.4 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|110667410|ref|YP_657221.1| - 0.13 12.5 0.0 0.16 12.2 0.0 1.4 1 1 0 1 1 1 0 ABC transporter Form_Nir_trans PF01226.12 gi|110667412|ref|YP_657223.1| - 2.3e-53 180.6 13.6 3e-53 180.2 9.4 1.1 1 0 0 1 1 1 1 Formate/nitrite transporter Usp PF00582.21 gi|110667412|ref|YP_657223.1| - 3.9e-17 62.7 4.8 6.7e-09 36.0 0.0 2.5 2 0 0 2 2 2 2 Universal stress protein family AAA_26 PF13500.1 gi|110667412|ref|YP_657223.1| - 0.21 11.1 1.1 0.49 9.9 0.1 2.0 3 0 0 3 3 3 0 AAA domain UPF0233 PF06781.7 gi|110667412|ref|YP_657223.1| - 0.42 10.2 0.0 0.42 10.2 0.0 2.8 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0233) zf-ribbon_3 PF13248.1 gi|110667413|ref|YP_657224.1| - 4.8e-05 22.4 1.1 7.2e-05 21.8 0.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|110667413|ref|YP_657224.1| - 4.9e-05 23.0 0.9 7e-05 22.5 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon TM2 PF05154.11 gi|110667413|ref|YP_657224.1| - 0.00022 21.3 0.5 0.0003 20.9 0.3 1.2 1 0 0 1 1 1 1 TM2 domain UPF0547 PF10571.4 gi|110667413|ref|YP_657224.1| - 0.0063 16.1 0.7 0.012 15.2 0.5 1.5 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|110667413|ref|YP_657224.1| - 0.027 13.9 0.1 0.041 13.3 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain TerY-C PF15616.1 gi|110667413|ref|YP_657224.1| - 0.12 12.3 2.2 2 8.3 0.1 2.1 1 1 1 2 2 2 0 TerY-C metal binding domain DUF1083 PF06452.6 gi|110667414|ref|YP_657225.1| - 0.0096 15.8 1.2 0.013 15.3 0.8 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1083) PsiE PF06146.7 gi|110667415|ref|YP_657226.1| - 3.8e-14 52.6 3.9 7e-14 51.8 2.7 1.5 1 0 0 1 1 1 1 Phosphate-starvation-inducible E TspO_MBR PF03073.10 gi|110667415|ref|YP_657226.1| - 0.0079 15.7 0.9 0.01 15.3 0.7 1.1 1 0 0 1 1 1 1 TspO/MBR family 7tm_3 PF00003.17 gi|110667415|ref|YP_657226.1| - 0.043 13.1 0.6 0.053 12.8 0.1 1.4 2 0 0 2 2 2 0 7 transmembrane sweet-taste receptor of 3 GCPR DUF2537 PF10801.3 gi|110667415|ref|YP_657226.1| - 0.19 11.8 5.2 4.4 7.4 0.1 2.7 3 1 0 3 3 3 0 Protein of unknown function (DUF2537) Rnf-Nqr PF02508.9 gi|110667415|ref|YP_657226.1| - 0.42 10.1 4.4 1.1 8.8 3.1 1.6 1 1 0 1 1 1 0 Rnf-Nqr subunit, membrane protein YoqO PF14037.1 gi|110667415|ref|YP_657226.1| - 0.6 10.2 5.2 0.79 9.8 3.6 1.2 1 0 0 1 1 1 0 YoqO-like protein Chromate_transp PF02417.10 gi|110667415|ref|YP_657226.1| - 1.9 8.0 7.2 0.44 10.1 2.4 1.7 2 0 0 2 2 2 0 Chromate transporter PfkB PF00294.19 gi|110667416|ref|YP_657227.1| - 8.9e-43 146.5 0.4 1e-42 146.3 0.3 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DUF4434 PF14488.1 gi|110667416|ref|YP_657227.1| - 0.13 11.9 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4434) DNA_mis_repair PF01119.14 gi|110667417|ref|YP_657228.1| - 4.8e-37 126.0 0.0 9.7e-37 125.0 0.0 1.5 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain MutL_C PF08676.6 gi|110667417|ref|YP_657228.1| - 9.9e-36 122.4 0.0 1.6e-35 121.8 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain HATPase_c_3 PF13589.1 gi|110667417|ref|YP_657228.1| - 4.6e-13 49.0 0.2 4.6e-13 49.0 0.2 2.7 2 1 1 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|110667417|ref|YP_657228.1| - 6.4e-11 41.9 0.8 2.4e-10 40.1 0.3 2.2 2 1 1 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NUDIX PF00293.23 gi|110667418|ref|YP_657229.1| - 9.6e-17 60.8 0.1 1.2e-16 60.6 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain Transglut_i_TM PF14400.1 gi|110667418|ref|YP_657229.1| - 0.1 12.1 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Inactive transglutaminase fused to 7 transmembrane helices NUDIX_2 PF13869.1 gi|110667418|ref|YP_657229.1| - 0.1 11.9 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Nucleotide hydrolase CARDB PF07705.6 gi|110667419|ref|YP_657230.1| - 0.0007 19.6 0.0 0.0012 18.8 0.0 1.4 1 0 0 1 1 1 1 CARDB IncA PF04156.9 gi|110667419|ref|YP_657230.1| - 0.11 12.1 0.1 0.25 10.9 0.0 1.7 2 0 0 2 2 2 0 IncA protein MutS_V PF00488.16 gi|110667421|ref|YP_657232.1| - 7.5e-95 316.8 0.0 1.2e-94 316.1 0.0 1.3 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|110667421|ref|YP_657232.1| - 2.9e-41 141.5 3.7 1.6e-40 139.0 2.5 2.2 2 1 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|110667421|ref|YP_657232.1| - 1.2e-25 89.7 0.0 2.7e-25 88.6 0.0 1.7 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.13 gi|110667421|ref|YP_657232.1| - 1.7e-23 82.5 1.9 3.9e-23 81.4 1.3 1.7 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|110667421|ref|YP_657232.1| - 9e-19 67.8 0.1 3.1e-18 66.1 0.0 2.0 2 0 0 2 2 2 1 MutS domain II AAA_29 PF13555.1 gi|110667421|ref|YP_657232.1| - 0.0055 16.2 0.0 0.012 15.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|110667421|ref|YP_657232.1| - 0.11 12.3 0.0 0.49 10.2 0.0 2.1 1 1 0 1 1 1 0 AAA domain adh_short PF00106.20 gi|110667422|ref|YP_657233.1| - 1.5e-21 77.0 1.3 2.5e-21 76.3 0.9 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|110667422|ref|YP_657233.1| - 1.4e-14 54.4 0.0 3.2e-13 50.0 0.0 2.1 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|110667422|ref|YP_657233.1| - 2.2e-09 37.2 1.1 3.3e-09 36.6 0.8 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|110667422|ref|YP_657233.1| - 0.0021 18.1 0.4 0.004 17.1 0.3 1.4 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|110667422|ref|YP_657233.1| - 0.0053 16.2 0.1 0.0082 15.6 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.14 gi|110667422|ref|YP_657233.1| - 0.094 11.7 0.3 0.3 10.1 0.1 1.8 1 1 1 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AstE_AspA PF04952.9 gi|110667423|ref|YP_657234.1| - 2.7e-12 46.2 0.0 4.1e-12 45.5 0.0 1.3 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family EamA PF00892.15 gi|110667424|ref|YP_657235.1| - 1.9e-12 47.2 14.2 2.2e-12 47.0 1.9 2.4 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|110667424|ref|YP_657235.1| - 1.3e-05 25.3 3.9 1.3e-05 25.3 2.7 2.9 1 1 2 3 3 3 1 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|110667424|ref|YP_657235.1| - 0.00012 21.8 0.4 0.00012 21.8 0.3 2.1 2 0 0 2 2 2 1 Uncharacterised protein family UPF0546 DUF3185 PF11381.3 gi|110667424|ref|YP_657235.1| - 0.04 13.6 1.7 0.04 13.6 1.2 3.5 4 1 1 5 5 5 0 Protein of unknown function (DUF3185) SBF PF01758.11 gi|110667424|ref|YP_657235.1| - 1.8 7.9 10.6 0.12 11.7 3.0 2.0 1 1 1 2 2 2 0 Sodium Bile acid symporter family ATP-grasp PF02222.17 gi|110667425|ref|YP_657236.1| - 4.3e-56 188.9 0.0 7.9e-56 188.0 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|110667425|ref|YP_657236.1| - 4e-19 69.0 0.0 6.7e-19 68.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|110667425|ref|YP_657236.1| - 3.8e-10 39.5 0.1 5.9e-09 35.6 0.0 2.4 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.12 gi|110667425|ref|YP_657236.1| - 7.9e-09 35.1 0.0 3.2e-08 33.1 0.0 1.9 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_Ter PF15632.1 gi|110667425|ref|YP_657236.1| - 1.5e-07 30.5 0.0 6.4e-06 25.1 0.0 2.0 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon GARS_A PF01071.14 gi|110667425|ref|YP_657236.1| - 9.4e-06 25.3 0.0 1.5e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_3 PF02655.9 gi|110667425|ref|YP_657236.1| - 0.00014 21.7 0.0 0.00031 20.6 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|110667425|ref|YP_657236.1| - 0.00023 20.6 0.0 0.00081 18.9 0.0 1.8 1 1 0 1 1 1 1 RimK-like ATP-grasp domain 2-Hacid_dh_C PF02826.14 gi|110667425|ref|YP_657236.1| - 0.0021 17.2 0.0 0.0042 16.2 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPSase_L_chain PF00289.17 gi|110667425|ref|YP_657236.1| - 0.0022 18.0 0.1 0.005 16.9 0.1 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain RmlD_sub_bind PF04321.12 gi|110667425|ref|YP_657236.1| - 0.016 14.1 0.1 0.032 13.1 0.1 1.5 1 0 0 1 1 1 0 RmlD substrate binding domain Epimerase PF01370.16 gi|110667425|ref|YP_657236.1| - 0.021 14.2 0.1 0.048 13.0 0.0 1.5 1 1 1 2 2 2 0 NAD dependent epimerase/dehydratase family DUF3182 PF11379.3 gi|110667425|ref|YP_657236.1| - 0.026 13.2 0.0 0.043 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3182) Inositol_P PF00459.20 gi|110667426|ref|YP_657237.1| - 5.2e-57 193.1 0.0 7.8e-57 192.6 0.0 1.2 1 0 0 1 1 1 1 Inositol monophosphatase family NAD_kinase PF01513.16 gi|110667426|ref|YP_657237.1| - 6.8e-34 116.9 0.2 1e-33 116.3 0.1 1.2 1 0 0 1 1 1 1 ATP-NAD kinase FBPase PF00316.15 gi|110667426|ref|YP_657237.1| - 0.00028 19.8 0.0 0.001 18.0 0.0 1.8 2 0 0 2 2 2 1 Fructose-1-6-bisphosphatase Ribonuc_L-PSP PF01042.16 gi|110667427|ref|YP_657238.1| - 2.2e-26 91.9 0.1 2.5e-26 91.8 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP SBBP PF06739.6 gi|110667427|ref|YP_657238.1| - 1.7 8.4 4.3 1.6 8.6 1.1 2.4 2 1 1 3 3 3 0 Beta-propeller repeat MFS_1 PF07690.11 gi|110667428|ref|YP_657239.1| - 2.2e-42 145.0 66.0 8.8e-40 136.4 30.7 1.6 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|110667428|ref|YP_657239.1| - 0.0019 16.8 37.7 0.037 12.6 8.4 2.3 2 1 0 2 2 2 2 Sugar (and other) transporter OATP PF03137.15 gi|110667428|ref|YP_657239.1| - 0.0031 15.6 2.5 0.0059 14.7 1.7 1.5 1 0 0 1 1 1 1 Organic Anion Transporter Polypeptide (OATP) family MFS_1_like PF12832.2 gi|110667428|ref|YP_657239.1| - 0.22 11.3 10.2 3.4 7.5 0.5 3.8 3 1 0 3 3 3 0 MFS_1 like family ASC PF00858.19 gi|110667428|ref|YP_657239.1| - 0.29 9.7 1.9 0.54 8.8 1.3 1.3 1 0 0 1 1 1 0 Amiloride-sensitive sodium channel ABC_tran PF00005.22 gi|110667429|ref|YP_657240.1| - 6.8e-31 107.3 0.0 1.1e-30 106.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110667429|ref|YP_657240.1| - 4.5e-13 49.8 0.0 3.9e-06 27.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|110667429|ref|YP_657240.1| - 1.3e-08 34.3 0.2 4.9e-06 25.9 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|110667429|ref|YP_657240.1| - 2.5e-05 24.4 0.0 8.3e-05 22.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|110667429|ref|YP_657240.1| - 2.6e-05 23.4 0.0 0.028 13.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|110667429|ref|YP_657240.1| - 8.2e-05 22.6 0.9 0.0072 16.3 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|110667429|ref|YP_657240.1| - 0.00014 21.3 0.0 0.00041 19.8 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|110667429|ref|YP_657240.1| - 0.00067 18.8 0.0 0.0012 18.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|110667429|ref|YP_657240.1| - 0.0035 17.0 0.0 3.6 7.4 0.0 2.5 2 0 0 2 2 2 2 Part of AAA domain AAA_23 PF13476.1 gi|110667429|ref|YP_657240.1| - 0.0045 17.3 0.0 0.0099 16.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|110667429|ref|YP_657240.1| - 0.0065 15.2 0.0 0.0092 14.7 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_25 PF13481.1 gi|110667429|ref|YP_657240.1| - 0.0067 15.8 0.2 0.041 13.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|110667429|ref|YP_657240.1| - 0.0086 15.9 0.0 0.025 14.4 0.0 1.7 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|110667429|ref|YP_657240.1| - 0.0094 15.4 0.0 0.02 14.3 0.0 1.7 1 1 0 1 1 1 1 AAA-like domain DeoRC PF00455.17 gi|110667429|ref|YP_657240.1| - 0.016 14.8 0.0 0.026 14.1 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain AAA_17 PF13207.1 gi|110667429|ref|YP_657240.1| - 0.017 15.9 0.2 0.076 13.8 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|110667429|ref|YP_657240.1| - 0.029 14.6 0.0 0.06 13.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|110667429|ref|YP_657240.1| - 0.12 10.8 0.0 8 4.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|110667429|ref|YP_657240.1| - 0.12 12.3 0.0 0.38 10.7 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase Adeno_IVa2 PF02456.10 gi|110667429|ref|YP_657240.1| - 0.15 10.6 0.0 0.8 8.2 0.0 1.9 2 0 0 2 2 2 0 Adenovirus IVa2 protein BPD_transp_1 PF00528.17 gi|110667430|ref|YP_657241.1| - 9.9e-22 77.3 13.5 9.9e-22 77.3 9.4 4.8 1 1 3 5 5 5 2 Binding-protein-dependent transport system inner membrane component CRPA PF05745.6 gi|110667430|ref|YP_657241.1| - 0.16 11.7 7.0 0.032 14.0 1.5 2.3 2 0 0 2 2 2 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) BPD_transp_1 PF00528.17 gi|110667431|ref|YP_657242.1| - 6.1e-16 58.4 16.1 6.1e-16 58.4 11.2 2.7 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4022 PF13214.1 gi|110667431|ref|YP_657242.1| - 3.6 7.7 11.4 1 9.5 4.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4022) PBP_like_2 PF12849.2 gi|110667432|ref|YP_657243.1| - 1.1e-34 120.2 4.2 2e-34 119.3 2.8 1.4 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|110667432|ref|YP_657243.1| - 4.1e-16 58.5 0.1 6.4e-16 57.8 0.1 1.2 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.4 gi|110667432|ref|YP_657243.1| - 0.0015 18.3 0.9 0.0033 17.2 0.6 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence LPAM_1 PF08139.7 gi|110667432|ref|YP_657243.1| - 0.37 11.0 1.7 0.82 9.9 1.2 1.6 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Fib_alpha PF08702.5 gi|110667433|ref|YP_657244.1| - 0.05 13.7 0.0 0.48 10.5 0.0 2.2 2 1 0 2 2 2 0 Fibrinogen alpha/beta chain family Snapin_Pallidin PF14712.1 gi|110667433|ref|YP_657244.1| - 0.057 13.7 0.1 14 6.0 0.0 2.7 2 2 0 2 2 2 0 Snapin/Pallidin HTH_Tnp_ISL3 PF13542.1 gi|110667433|ref|YP_657244.1| - 0.13 11.4 1.3 1.2 8.3 0.0 3.2 4 0 0 4 4 4 0 Helix-turn-helix domain of transposase family ISL3 IncA PF04156.9 gi|110667433|ref|YP_657244.1| - 0.15 11.6 0.1 4.2 6.9 0.1 2.4 1 1 0 1 1 1 0 IncA protein PSK_trans_fac PF07704.6 gi|110667433|ref|YP_657244.1| - 1.3 9.7 5.1 3.9 8.2 2.3 2.8 2 1 0 2 2 2 0 Rv0623-like transcription factor Pribosyltran PF00156.22 gi|110667434|ref|YP_657245.1| - 4e-23 81.4 0.4 5.5e-23 81.0 0.3 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|110667434|ref|YP_657245.1| - 0.0062 15.7 0.1 0.011 14.9 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|110667434|ref|YP_657245.1| - 0.038 13.3 0.1 0.054 12.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase PfkB PF00294.19 gi|110667435|ref|YP_657246.1| - 9e-31 107.1 0.1 5.1e-19 68.5 0.0 2.3 3 0 0 3 3 3 2 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|110667435|ref|YP_657246.1| - 0.00018 20.7 0.1 0.00095 18.4 0.0 1.9 2 0 0 2 2 2 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|110667435|ref|YP_657246.1| - 0.044 13.0 0.1 0.11 11.8 0.0 1.6 2 0 0 2 2 2 0 Carbohydrate kinase ABC_tran PF00005.22 gi|110667438|ref|YP_657249.1| - 2.9e-33 115.0 0.0 4.8e-33 114.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|110667438|ref|YP_657249.1| - 1.9e-17 63.3 0.6 3.8e-17 62.3 0.4 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|110667438|ref|YP_657249.1| - 1.1e-07 32.1 0.1 0.00012 22.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|110667438|ref|YP_657249.1| - 0.0004 20.4 0.4 0.0044 17.0 0.1 2.2 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|110667438|ref|YP_657249.1| - 0.0018 17.5 0.0 0.0057 15.9 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain FtsK_SpoIIIE PF01580.13 gi|110667438|ref|YP_657249.1| - 0.0021 17.5 0.0 0.0039 16.6 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|110667438|ref|YP_657249.1| - 0.0021 18.1 0.2 0.01 15.9 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|110667438|ref|YP_657249.1| - 0.0094 15.4 0.5 0.021 14.3 0.3 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|110667438|ref|YP_657249.1| - 0.031 14.5 1.1 0.062 13.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.21 gi|110667438|ref|YP_657249.1| - 0.034 13.6 0.1 8.3 5.8 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_13 PF13166.1 gi|110667438|ref|YP_657249.1| - 0.041 12.3 0.2 6.5 5.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|110667438|ref|YP_657249.1| - 0.042 13.0 0.0 0.073 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|110667438|ref|YP_657249.1| - 0.064 12.6 0.1 0.5 9.7 0.0 2.3 2 1 1 3 3 3 0 AAA-like domain AAA_33 PF13671.1 gi|110667438|ref|YP_657249.1| - 0.095 12.5 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|110667438|ref|YP_657249.1| - 0.13 11.9 0.1 3.3 7.4 0.2 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|110667438|ref|YP_657249.1| - 0.13 11.6 0.5 0.51 9.7 0.3 2.0 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|110667438|ref|YP_657249.1| - 0.15 11.7 0.7 0.37 10.4 0.4 1.7 2 0 0 2 2 2 0 NACHT domain UPF0079 PF02367.12 gi|110667438|ref|YP_657249.1| - 0.16 11.5 0.3 0.34 10.5 0.2 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ABC_tran PF00005.22 gi|110667439|ref|YP_657250.1| - 1.3e-27 96.7 0.0 1.9e-27 96.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|110667439|ref|YP_657250.1| - 1.6e-20 73.2 0.3 5.3e-20 71.5 0.2 2.0 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|110667439|ref|YP_657250.1| - 2.6e-08 34.1 0.2 5.6e-06 26.5 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|110667439|ref|YP_657250.1| - 0.00014 21.1 0.0 0.00034 19.9 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|110667439|ref|YP_657250.1| - 0.0009 18.7 0.1 0.015 14.7 0.0 2.1 1 1 1 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|110667439|ref|YP_657250.1| - 0.0024 17.8 0.0 0.0047 16.9 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|110667439|ref|YP_657250.1| - 0.0044 16.5 0.0 0.0095 15.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|110667439|ref|YP_657250.1| - 0.016 15.3 0.1 0.73 9.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|110667439|ref|YP_657250.1| - 0.023 13.7 0.1 0.093 11.7 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain ATP-synt_ab PF00006.20 gi|110667439|ref|YP_657250.1| - 0.036 13.5 0.0 0.062 12.7 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF87 PF01935.12 gi|110667439|ref|YP_657250.1| - 0.058 13.2 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF87 Sigma54_activat PF00158.21 gi|110667439|ref|YP_657250.1| - 0.13 11.7 0.1 0.5 9.8 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain AIG1 PF04548.11 gi|110667439|ref|YP_657250.1| - 0.26 10.3 1.4 1.2 8.2 0.3 2.4 3 0 0 3 3 3 0 AIG1 family BPD_transp_1 PF00528.17 gi|110667440|ref|YP_657251.1| - 9.1e-20 70.9 14.4 9.1e-20 70.9 10.0 2.8 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|110667440|ref|YP_657251.1| - 0.00014 21.1 0.0 0.00014 21.1 0.0 3.5 3 1 1 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C Exo_endo_phos_2 PF14529.1 gi|110667440|ref|YP_657251.1| - 0.06 12.9 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 Endonuclease-reverse transcriptase FliP PF00813.15 gi|110667440|ref|YP_657251.1| - 0.45 10.1 4.2 2.3 7.8 0.3 2.9 3 0 0 3 3 3 0 FliP family BPD_transp_1 PF00528.17 gi|110667441|ref|YP_657252.1| - 9.2e-30 103.5 16.3 9.2e-30 103.5 11.3 2.6 2 2 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|110667442|ref|YP_657253.1| - 5.1e-60 203.2 7.0 1.1e-47 162.6 1.4 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|110667442|ref|YP_657253.1| - 3.3e-05 23.5 1.1 6.1e-05 22.7 0.8 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|110667442|ref|YP_657253.1| - 0.0081 15.3 2.0 0.015 14.4 1.4 1.4 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ABC_tran PF00005.22 gi|110667443|ref|YP_657254.1| - 2.8e-34 118.3 0.0 4.8e-34 117.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|110667443|ref|YP_657254.1| - 5.5e-21 74.6 0.3 1.1e-20 73.7 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|110667443|ref|YP_657254.1| - 1.6e-09 38.1 0.0 2.5e-05 24.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|110667443|ref|YP_657254.1| - 6.1e-05 23.0 0.0 0.00012 22.1 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|110667443|ref|YP_657254.1| - 0.00065 18.9 0.1 0.048 12.8 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|110667443|ref|YP_657254.1| - 0.0011 19.0 0.1 0.0087 16.2 0.1 2.1 1 1 0 1 1 1 1 AAA domain PRK PF00485.13 gi|110667443|ref|YP_657254.1| - 0.0031 17.0 0.0 0.006 16.1 0.0 1.5 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.1 gi|110667443|ref|YP_657254.1| - 0.0045 17.2 0.0 0.011 16.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|110667443|ref|YP_657254.1| - 0.0053 15.2 0.6 0.16 10.3 0.2 2.0 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|110667443|ref|YP_657254.1| - 0.0053 17.5 0.0 0.016 16.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.20 gi|110667443|ref|YP_657254.1| - 0.011 15.2 0.0 0.02 14.3 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF258 PF03193.11 gi|110667443|ref|YP_657254.1| - 0.022 13.9 0.0 0.044 12.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|110667443|ref|YP_657254.1| - 0.026 14.0 0.1 0.045 13.2 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|110667443|ref|YP_657254.1| - 0.057 13.3 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|110667443|ref|YP_657254.1| - 0.068 12.7 0.0 1.4 8.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|110667443|ref|YP_657254.1| - 0.076 12.1 0.0 0.17 11.0 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|110667443|ref|YP_657254.1| - 0.11 11.9 0.1 0.87 9.0 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_15 PF13175.1 gi|110667443|ref|YP_657254.1| - 0.16 10.9 0.2 2.1 7.2 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain ABC_tran PF00005.22 gi|110667444|ref|YP_657255.1| - 1.9e-28 99.4 0.1 2.6e-28 99.0 0.1 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|110667444|ref|YP_657255.1| - 1e-17 64.2 0.3 1.9e-17 63.3 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.14 gi|110667444|ref|YP_657255.1| - 1e-07 31.4 0.0 1.5e-07 30.8 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|110667444|ref|YP_657255.1| - 1.8e-07 31.3 0.0 0.00013 22.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|110667444|ref|YP_657255.1| - 2.7e-06 27.5 0.2 9.8e-05 22.5 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|110667444|ref|YP_657255.1| - 0.0033 16.5 0.0 0.012 14.7 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|110667444|ref|YP_657255.1| - 0.0043 17.2 0.1 0.15 12.2 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|110667444|ref|YP_657255.1| - 0.0044 16.4 0.3 1.2 8.4 0.0 2.5 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|110667444|ref|YP_657255.1| - 0.0074 16.2 0.1 0.014 15.4 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|110667444|ref|YP_657255.1| - 0.0094 15.8 0.1 0.014 15.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|110667444|ref|YP_657255.1| - 0.0096 15.4 0.1 0.018 14.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain PRK PF00485.13 gi|110667444|ref|YP_657255.1| - 0.023 14.2 0.1 0.033 13.7 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family FtsK_SpoIIIE PF01580.13 gi|110667444|ref|YP_657255.1| - 0.024 14.0 0.0 0.045 13.2 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family UPF0079 PF02367.12 gi|110667444|ref|YP_657255.1| - 0.089 12.4 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 BPD_transp_1 PF00528.17 gi|110667445|ref|YP_657256.1| - 8.6e-27 93.8 12.5 8.6e-27 93.8 8.6 1.9 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|110667445|ref|YP_657256.1| - 0.00015 21.0 0.4 0.00015 21.0 0.3 3.3 3 0 0 3 3 3 2 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|110667446|ref|YP_657257.1| - 2.3e-38 131.5 14.8 2.3e-38 131.5 10.2 1.9 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|110667447|ref|YP_657258.1| - 4.2e-68 229.8 0.0 5.6e-68 229.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle PhnH PF05845.7 gi|110667447|ref|YP_657258.1| - 0.065 12.6 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial phosphonate metabolism protein (PhnH) MFS_1 PF07690.11 gi|110667448|ref|YP_657259.1| - 4.6e-41 140.7 61.2 8.6e-30 103.6 22.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily G_glu_transpept PF01019.16 gi|110667449|ref|YP_657260.1| - 2.7e-149 497.9 0.0 3e-149 497.7 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase UPF0104 PF03706.8 gi|110667450|ref|YP_657261.1| - 1.3e-35 123.0 27.2 2e-35 122.5 18.9 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Glycos_transf_2 PF00535.21 gi|110667450|ref|YP_657261.1| - 2.8e-26 92.2 0.0 4.3e-26 91.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|110667450|ref|YP_657261.1| - 2.4e-10 40.5 0.1 5.6e-10 39.3 0.1 1.6 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|110667450|ref|YP_657261.1| - 1.7e-05 24.0 0.0 2.4e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|110667450|ref|YP_657261.1| - 0.012 15.9 0.0 0.023 14.9 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 RepL PF05732.6 gi|110667451|ref|YP_657262.1| - 0.029 13.5 0.1 0.035 13.2 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_6 PF01418.12 gi|110667451|ref|YP_657262.1| - 0.046 13.4 0.1 0.073 12.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_24 PF13412.1 gi|110667452|ref|YP_657263.1| - 1.6e-09 36.9 0.0 6e-06 25.5 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|110667452|ref|YP_657263.1| - 4.8e-08 32.9 0.0 0.012 15.6 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|110667452|ref|YP_657263.1| - 5.1e-08 32.6 0.0 0.0051 16.5 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|110667452|ref|YP_657263.1| - 8.9e-08 31.6 0.0 0.0014 18.2 0.0 2.2 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|110667452|ref|YP_657263.1| - 2.4e-06 27.1 0.1 8.2e-05 22.1 0.0 2.3 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|110667452|ref|YP_657263.1| - 1.7e-05 24.4 0.0 7.4e-05 22.3 0.0 2.0 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|110667452|ref|YP_657263.1| - 4.3e-05 23.1 0.0 0.0032 17.1 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|110667452|ref|YP_657263.1| - 0.00084 18.9 0.1 0.0018 17.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.14 gi|110667452|ref|YP_657263.1| - 0.0022 17.8 0.0 0.0049 16.7 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.1 gi|110667452|ref|YP_657263.1| - 0.0054 16.2 0.6 0.029 13.9 0.1 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|110667452|ref|YP_657263.1| - 0.01 15.6 0.0 0.023 14.4 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain RPA_C PF08784.6 gi|110667452|ref|YP_657263.1| - 0.01 16.2 0.5 0.049 14.0 0.0 2.0 2 0 0 2 2 2 0 Replication protein A C terminal DUF2250 PF10007.4 gi|110667452|ref|YP_657263.1| - 0.015 15.2 0.0 0.13 12.2 0.0 2.3 2 1 1 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2250) EAP30 PF04157.11 gi|110667452|ref|YP_657263.1| - 0.04 13.0 0.0 0.12 11.4 0.0 1.7 2 0 0 2 2 2 0 EAP30/Vps36 family RP-C PF03428.8 gi|110667452|ref|YP_657263.1| - 0.11 11.9 0.3 6.1 6.2 0.1 2.2 2 0 0 2 2 2 0 Replication protein C N-terminal domain Band_7 PF01145.20 gi|110667453|ref|YP_657264.1| - 8.9e-39 133.2 3.1 8.9e-39 133.2 2.1 2.4 2 1 0 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|110667453|ref|YP_657264.1| - 3e-05 23.6 0.7 6.5e-05 22.5 0.2 1.8 2 0 0 2 2 2 1 SPFH domain-Band 7 family DEPP PF15343.1 gi|110667453|ref|YP_657264.1| - 0.93 9.0 5.0 5.8 6.4 0.0 2.2 2 0 0 2 2 2 0 Decidual protein induced by progesterone family ABC_tran PF00005.22 gi|110667454|ref|YP_657265.1| - 9.6e-28 97.1 0.0 1.6e-27 96.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110667454|ref|YP_657265.1| - 2.4e-16 60.5 0.0 5.3e-10 39.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|110667454|ref|YP_657265.1| - 0.00045 20.5 0.0 0.00084 19.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|110667454|ref|YP_657265.1| - 0.00064 19.2 0.2 0.0015 18.0 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|110667454|ref|YP_657265.1| - 0.0017 17.5 0.0 0.15 11.2 0.0 2.3 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.1 gi|110667454|ref|YP_657265.1| - 0.0023 17.5 0.1 0.011 15.3 0.1 2.2 1 1 1 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|110667454|ref|YP_657265.1| - 0.0041 16.7 0.2 0.0082 15.7 0.1 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|110667454|ref|YP_657265.1| - 0.008 16.3 0.1 0.024 14.8 0.1 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|110667454|ref|YP_657265.1| - 0.009 16.0 0.1 0.03 14.3 0.1 2.0 2 1 0 2 2 2 1 AAA ATPase domain MMR_HSR1 PF01926.18 gi|110667454|ref|YP_657265.1| - 0.011 15.6 0.1 0.027 14.4 0.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_15 PF13175.1 gi|110667454|ref|YP_657265.1| - 0.014 14.4 0.0 3.1 6.7 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain SbcCD_C PF13558.1 gi|110667454|ref|YP_657265.1| - 0.016 15.1 0.0 0.16 11.9 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|110667454|ref|YP_657265.1| - 0.021 14.7 0.4 0.039 13.8 0.3 1.7 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|110667454|ref|YP_657265.1| - 0.024 14.0 0.0 0.43 9.9 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF258 PF03193.11 gi|110667454|ref|YP_657265.1| - 0.035 13.3 0.1 0.06 12.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|110667454|ref|YP_657265.1| - 0.04 13.8 0.0 0.067 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|110667454|ref|YP_657265.1| - 0.082 12.3 0.4 0.17 11.3 0.3 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|110667454|ref|YP_657265.1| - 0.1 12.7 0.1 0.16 12.1 0.1 1.6 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|110667454|ref|YP_657265.1| - 0.11 13.0 0.1 0.25 11.8 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein ABC2_membrane PF01061.19 gi|110667455|ref|YP_657266.1| - 1.7e-20 73.0 17.8 2.6e-20 72.5 12.3 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|110667455|ref|YP_657266.1| - 5.3e-08 32.2 15.4 5.3e-08 32.2 10.7 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|110667455|ref|YP_657266.1| - 0.00014 21.0 24.0 0.00021 20.5 16.6 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|110667455|ref|YP_657266.1| - 0.0002 20.3 11.5 0.0002 20.3 8.0 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein OppC_N PF12911.2 gi|110667455|ref|YP_657266.1| - 0.12 11.7 0.4 0.12 11.7 0.3 3.2 4 0 0 4 4 4 0 N-terminal TM domain of oligopeptide transport permease C ABC2_membrane_5 PF13346.1 gi|110667455|ref|YP_657266.1| - 0.26 10.5 16.0 1.3 8.2 11.1 2.2 1 1 0 1 1 1 0 ABC-2 family transporter protein Aldolase PF01081.14 gi|110667456|ref|YP_657267.1| - 2.3e-41 141.1 1.3 2.7e-41 140.9 0.9 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase DHO_dh PF01180.16 gi|110667456|ref|YP_657267.1| - 0.0028 16.6 5.9 0.9 8.4 0.5 3.1 2 1 1 3 3 3 3 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|110667456|ref|YP_657267.1| - 0.0031 16.8 0.5 0.24 10.6 0.0 3.1 3 1 0 3 3 3 1 PcrB family TMP-TENI PF02581.12 gi|110667456|ref|YP_657267.1| - 0.0044 16.1 0.4 0.065 12.3 0.1 2.6 2 2 0 2 2 2 1 Thiamine monophosphate synthase/TENI FMN_dh PF01070.13 gi|110667456|ref|YP_657267.1| - 0.021 13.6 0.2 0.26 10.0 0.1 2.1 1 1 0 1 1 1 0 FMN-dependent dehydrogenase NMO PF03060.10 gi|110667456|ref|YP_657267.1| - 0.12 11.5 2.3 0.54 9.3 1.3 2.2 1 1 0 1 1 1 0 Nitronate monooxygenase bPH_2 PF03703.9 gi|110667457|ref|YP_657268.1| - 2.9e-47 158.5 13.2 4.6e-20 71.4 0.5 3.9 4 0 0 4 4 4 3 Bacterial PH domain bPH_4 PF06713.6 gi|110667457|ref|YP_657268.1| - 0.0035 17.1 0.0 0.86 9.5 0.0 3.1 3 0 0 3 3 3 1 Bacterial PH domain bPH_2 PF03703.9 gi|110667458|ref|YP_657269.1| - 3.4e-19 68.6 0.3 5e-19 68.1 0.2 1.2 1 0 0 1 1 1 1 Bacterial PH domain CopD PF05425.8 gi|110667460|ref|YP_657271.1| - 8.6e-07 29.1 8.3 8.6e-07 29.1 5.8 1.4 2 0 0 2 2 2 1 Copper resistance protein D DUF2269 PF10027.4 gi|110667460|ref|YP_657271.1| - 0.16 11.7 7.1 0.22 11.3 4.9 1.2 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2269) DUF2071 PF09844.4 gi|110667461|ref|YP_657272.1| - 1.1e-69 234.2 0.0 1.2e-69 234.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.6 gi|110667461|ref|YP_657272.1| - 0.00067 19.0 0.1 0.0015 17.9 0.0 1.5 1 1 1 2 2 2 1 Acetoacetate decarboxylase (ADC) CENP-F_leu_zip PF10473.4 gi|110667462|ref|YP_657273.1| - 0.00013 21.8 2.2 0.00021 21.1 1.1 1.5 1 1 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Apolipoprotein PF01442.13 gi|110667462|ref|YP_657273.1| - 0.0011 18.4 0.4 0.0013 18.3 0.3 1.3 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain TBPIP PF07106.8 gi|110667462|ref|YP_657273.1| - 0.018 14.5 0.7 0.027 14.0 0.5 1.3 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Spc7 PF08317.6 gi|110667462|ref|YP_657273.1| - 0.023 13.3 0.9 0.027 13.1 0.6 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF4164 PF13747.1 gi|110667462|ref|YP_657273.1| - 0.023 14.8 3.9 0.024 14.7 1.5 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) Paxillin PF03535.8 gi|110667462|ref|YP_657273.1| - 0.023 14.4 1.0 0.04 13.7 0.4 1.6 1 1 0 1 1 1 0 Paxillin family DASH_Dad2 PF08654.5 gi|110667462|ref|YP_657273.1| - 0.025 14.5 2.0 0.025 14.5 1.4 1.9 2 1 1 3 3 2 0 DASH complex subunit Dad2 Cep57_MT_bd PF06657.8 gi|110667462|ref|YP_657273.1| - 0.034 14.0 0.1 0.068 13.1 0.1 1.6 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 GTPase_Cys_C PF12631.2 gi|110667462|ref|YP_657273.1| - 0.044 14.1 0.9 0.095 13.1 0.2 1.9 2 0 0 2 2 2 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE DUF641 PF04859.7 gi|110667462|ref|YP_657273.1| - 0.053 13.2 0.1 0.11 12.3 0.1 1.5 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) ALIX_LYPXL_bnd PF13949.1 gi|110667462|ref|YP_657273.1| - 0.054 12.4 10.8 0.027 13.4 3.5 2.0 1 1 1 2 2 2 0 ALIX V-shaped domain binding to HIV BLOC1_2 PF10046.4 gi|110667462|ref|YP_657273.1| - 0.063 13.4 1.7 0.15 12.1 1.1 1.6 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Med9 PF07544.8 gi|110667462|ref|YP_657273.1| - 0.063 13.0 2.1 0.14 11.9 1.0 1.9 2 0 0 2 2 1 0 RNA polymerase II transcription mediator complex subunit 9 Baculo_PEP_C PF04513.7 gi|110667462|ref|YP_657273.1| - 0.065 13.0 2.0 0.14 11.9 1.2 1.9 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus COG2 PF06148.6 gi|110667462|ref|YP_657273.1| - 0.069 13.0 1.2 0.15 11.9 0.5 1.8 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Fzo_mitofusin PF04799.8 gi|110667462|ref|YP_657273.1| - 0.093 12.1 0.2 0.17 11.2 0.1 1.4 1 0 0 1 1 1 0 fzo-like conserved region Rho_Binding PF08912.6 gi|110667462|ref|YP_657273.1| - 0.1 12.9 0.5 0.19 12.0 0.3 1.4 1 0 0 1 1 1 0 Rho Binding NPV_P10 PF05531.7 gi|110667462|ref|YP_657273.1| - 0.12 12.6 3.1 0.41 10.9 2.1 2.1 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Prefoldin_2 PF01920.15 gi|110667462|ref|YP_657273.1| - 0.23 11.2 5.3 0.97 9.2 1.5 2.4 1 1 1 2 2 2 0 Prefoldin subunit Reo_sigmaC PF04582.7 gi|110667462|ref|YP_657273.1| - 0.23 10.5 7.7 0.21 10.7 4.6 1.5 1 1 0 1 1 1 0 Reovirus sigma C capsid protein SlyX PF04102.7 gi|110667462|ref|YP_657273.1| - 0.31 11.4 4.2 1 9.7 2.0 2.4 1 1 1 2 2 2 0 SlyX DUF1664 PF07889.7 gi|110667462|ref|YP_657273.1| - 0.37 10.5 4.0 1.6 8.5 2.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) TMF_DNA_bd PF12329.3 gi|110667462|ref|YP_657273.1| - 0.47 10.2 6.0 0.25 11.1 1.3 2.4 3 0 0 3 3 3 0 TATA element modulatory factor 1 DNA binding Tropomyosin_1 PF12718.2 gi|110667462|ref|YP_657273.1| - 0.55 10.0 5.1 0.49 10.2 2.2 1.9 2 0 0 2 2 2 0 Tropomyosin like TPR_MLP1_2 PF07926.7 gi|110667462|ref|YP_657273.1| - 1 9.1 6.6 8.6 6.1 1.2 2.1 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein DUF948 PF06103.6 gi|110667462|ref|YP_657273.1| - 2.7 7.9 6.7 2.1 8.2 1.6 2.6 2 1 1 3 3 2 0 Bacterial protein of unknown function (DUF948) FliD_N PF02465.13 gi|110667462|ref|YP_657273.1| - 3.3 8.1 8.4 1.1 9.7 3.1 2.0 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus FlaC_arch PF05377.6 gi|110667462|ref|YP_657273.1| - 3.7 7.5 10.1 0.92 9.4 1.6 3.3 3 1 1 4 4 4 0 Flagella accessory protein C (FlaC) LXG PF04740.7 gi|110667462|ref|YP_657273.1| - 4 7.1 9.3 0.14 11.9 0.6 2.4 3 0 0 3 3 3 0 LXG domain of WXG superfamily WW PF00397.21 gi|110667463|ref|YP_657274.1| - 0.075 12.9 0.2 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 WW domain DUF3797 PF12677.2 gi|110667463|ref|YP_657274.1| - 0.076 12.6 0.1 0.13 11.9 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3797) DUF393 PF04134.7 gi|110667463|ref|YP_657274.1| - 0.08 14.0 0.1 0.14 13.3 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function, DUF393 SRP19 PF01922.12 gi|110667464|ref|YP_657275.1| - 5.5e-26 90.9 0.0 6.1e-26 90.8 0.0 1.0 1 0 0 1 1 1 1 SRP19 protein PurS PF02700.9 gi|110667464|ref|YP_657275.1| - 0.072 13.0 0.1 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosylformylglycinamidine (FGAM) synthase Gar1 PF04410.9 gi|110667465|ref|YP_657276.1| - 8.7e-06 25.2 0.0 8.7e-06 25.2 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region DUF1119 PF06550.6 gi|110667466|ref|YP_657277.1| - 7.8e-81 271.3 21.3 2e-80 269.9 14.7 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1119) Peptidase_A22B PF04258.8 gi|110667466|ref|YP_657277.1| - 0.00012 21.6 8.8 0.003 17.0 0.6 3.1 2 1 0 3 3 3 2 Signal peptide peptidase Presenilin PF01080.12 gi|110667466|ref|YP_657277.1| - 0.048 12.4 7.2 0.11 11.2 1.0 2.5 2 2 0 2 2 2 0 Presenilin NYN PF01936.13 gi|110667467|ref|YP_657278.1| - 3.7e-37 127.8 0.1 4.5e-37 127.5 0.0 1.0 1 0 0 1 1 1 1 NYN domain DUF2529 PF10740.4 gi|110667467|ref|YP_657278.1| - 0.051 13.0 0.1 0.12 11.8 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2529) DHDPS PF00701.17 gi|110667468|ref|YP_657279.1| - 5.3e-90 300.9 0.0 6.5e-90 300.6 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family PEP_mutase PF13714.1 gi|110667468|ref|YP_657279.1| - 0.0008 18.6 0.0 0.0011 18.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ThiG PF05690.9 gi|110667468|ref|YP_657279.1| - 0.0041 16.2 0.1 0.0068 15.5 0.0 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG Peripla_BP_1 PF00532.16 gi|110667468|ref|YP_657279.1| - 0.046 12.9 0.1 0.39 9.8 0.0 2.0 2 0 0 2 2 2 0 Periplasmic binding proteins and sugar binding domain of LacI family DapB_C PF05173.9 gi|110667469|ref|YP_657280.1| - 1.3e-37 128.4 0.1 1.9e-37 127.9 0.1 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|110667469|ref|YP_657280.1| - 2.2e-20 72.8 0.0 4.5e-20 71.8 0.0 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|110667469|ref|YP_657280.1| - 0.044 14.0 0.2 0.12 12.6 0.1 1.8 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Mating_C PF12737.2 gi|110667469|ref|YP_657280.1| - 0.069 12.0 1.0 0.093 11.5 0.7 1.1 1 0 0 1 1 1 0 C-terminal domain of homeodomain 1 Bromo_TP PF07524.8 gi|110667469|ref|YP_657280.1| - 0.076 12.7 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Bromodomain associated THDPS_N_2 PF14805.1 gi|110667470|ref|YP_657281.1| - 1e-17 63.7 0.0 1.6e-17 63.1 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.19 gi|110667470|ref|YP_657281.1| - 1.2e-13 49.8 8.6 3.3e-06 26.3 1.8 3.3 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|110667470|ref|YP_657281.1| - 0.069 12.7 13.9 0.17 11.4 1.1 3.8 1 1 2 4 4 4 0 Hexapeptide repeat of succinyl-transferase Orn_Arg_deC_N PF02784.11 gi|110667471|ref|YP_657282.1| - 1.1e-39 136.1 0.0 1.6e-39 135.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|110667471|ref|YP_657282.1| - 3.3e-20 71.9 0.0 6.2e-20 71.0 0.0 1.5 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DAP_epimerase PF01678.14 gi|110667472|ref|YP_657283.1| - 2.5e-43 146.8 2.8 2.5e-21 75.8 0.1 2.2 2 0 0 2 2 2 2 Diaminopimelate epimerase PhzC-PhzF PF02567.11 gi|110667472|ref|YP_657283.1| - 3.1e-05 23.3 0.5 6.5e-05 22.2 0.2 1.5 1 1 1 2 2 2 1 Phenazine biosynthesis-like protein Pro_racemase PF05544.6 gi|110667472|ref|YP_657283.1| - 0.0018 17.1 2.9 0.16 10.7 0.1 2.2 2 0 0 2 2 2 2 Proline racemase Peptidase_M20 PF01546.23 gi|110667473|ref|YP_657284.1| - 2.8e-22 79.1 8.4 5e-22 78.3 5.8 1.4 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|110667473|ref|YP_657284.1| - 1.6e-18 66.4 0.1 2.9e-18 65.6 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain BNIP3 PF06553.7 gi|110667473|ref|YP_657284.1| - 1.8 7.8 7.1 2.9 7.2 4.9 1.3 1 0 0 1 1 1 0 BNIP3 RNase_P_p30 PF01876.11 gi|110667474|ref|YP_657285.1| - 3.1e-31 107.6 0.0 5.5e-31 106.8 0.0 1.4 1 0 0 1 1 1 1 RNase P subunit p30 Methyltransf_11 PF08241.7 gi|110667475|ref|YP_657286.1| - 2.4e-13 50.3 0.0 4.4e-13 49.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|110667475|ref|YP_657286.1| - 3.8e-13 49.2 0.2 5.2e-13 48.8 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|110667475|ref|YP_657286.1| - 1.7e-12 47.8 0.2 2.9e-12 47.1 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|110667475|ref|YP_657286.1| - 4e-10 39.9 0.2 9.2e-10 38.7 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|110667475|ref|YP_657286.1| - 4.8e-09 35.6 0.3 7.5e-09 35.0 0.2 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|110667475|ref|YP_657286.1| - 1.5e-08 35.0 0.1 2.3e-08 34.4 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|110667475|ref|YP_657286.1| - 3.7e-05 23.7 0.1 4.9e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|110667475|ref|YP_657286.1| - 6.7e-05 22.6 0.0 8.7e-05 22.3 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|110667475|ref|YP_657286.1| - 0.00029 20.2 0.2 0.00041 19.7 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|110667475|ref|YP_657286.1| - 0.00088 18.3 0.0 0.0011 18.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_2 PF00891.13 gi|110667475|ref|YP_657286.1| - 0.001 18.3 0.1 0.0013 18.0 0.1 1.1 1 0 0 1 1 1 1 O-methyltransferase PrmA PF06325.8 gi|110667475|ref|YP_657286.1| - 0.0021 17.2 0.3 0.0029 16.7 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.1 gi|110667475|ref|YP_657286.1| - 0.0027 17.4 0.1 0.0036 16.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.7 gi|110667475|ref|YP_657286.1| - 0.012 14.4 0.0 0.016 14.0 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase tRNA_U5-meth_tr PF05958.6 gi|110667475|ref|YP_657286.1| - 0.03 12.9 0.0 0.041 12.5 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase UPF0020 PF01170.13 gi|110667475|ref|YP_657286.1| - 0.046 13.2 0.3 0.073 12.6 0.2 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 PCMT PF01135.14 gi|110667475|ref|YP_657286.1| - 0.051 13.0 0.0 0.075 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.12 gi|110667475|ref|YP_657286.1| - 0.063 12.3 0.0 0.082 11.9 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase AstE_AspA PF04952.9 gi|110667475|ref|YP_657286.1| - 0.089 11.6 0.0 0.33 9.7 0.0 1.7 2 0 0 2 2 2 0 Succinylglutamate desuccinylase / Aspartoacylase family CMAS PF02353.15 gi|110667475|ref|YP_657286.1| - 0.12 11.4 0.0 0.19 10.7 0.0 1.3 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase RNase_P_Rpp14 PF01900.14 gi|110667476|ref|YP_657287.1| - 4.6e-23 81.1 0.0 6.2e-23 80.7 0.0 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family Proteasome PF00227.21 gi|110667477|ref|YP_657288.1| - 3.9e-58 195.8 0.0 5.3e-58 195.4 0.0 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|110667477|ref|YP_657288.1| - 2.6e-14 52.1 0.1 4.4e-14 51.4 0.1 1.4 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature MarR PF01047.17 gi|110667478|ref|YP_657289.1| - 1.2e-05 24.8 0.0 1.7e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.7 gi|110667478|ref|YP_657289.1| - 0.0021 17.8 0.0 0.0029 17.4 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR_2 PF12802.2 gi|110667478|ref|YP_657289.1| - 0.051 13.2 0.0 0.082 12.5 0.0 1.4 1 0 0 1 1 1 0 MarR family NRDE PF05742.7 gi|110667479|ref|YP_657290.1| - 1.9e-24 86.4 0.1 2.7e-24 85.9 0.1 1.1 1 0 0 1 1 1 1 NRDE protein HTH_12 PF08461.5 gi|110667480|ref|YP_657291.1| - 0.0049 16.5 0.0 0.0083 15.8 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Phage_rep_org_N PF09681.5 gi|110667480|ref|YP_657291.1| - 0.019 14.5 0.0 0.02 14.4 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) PhosphMutase PF10143.4 gi|110667480|ref|YP_657291.1| - 0.1 12.2 0.0 0.11 12.1 0.0 1.1 1 0 0 1 1 1 0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Trp_halogenase PF04820.9 gi|110667481|ref|YP_657292.1| - 1.6e-11 43.4 3.3 3.7e-08 32.4 0.0 2.3 2 0 0 2 2 2 2 Tryptophan halogenase DAO PF01266.19 gi|110667481|ref|YP_657292.1| - 1e-09 37.8 6.3 4.2e-06 25.9 0.3 2.5 2 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|110667481|ref|YP_657292.1| - 4e-09 35.8 4.4 1.5e-07 30.6 1.2 2.5 3 0 0 3 3 2 2 FAD binding domain FAD_binding_3 PF01494.14 gi|110667481|ref|YP_657292.1| - 1e-08 34.6 1.1 0.0027 16.8 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|110667481|ref|YP_657292.1| - 6e-08 32.1 8.0 0.0001 21.5 3.8 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|110667481|ref|YP_657292.1| - 3.7e-07 29.3 0.2 3.7e-07 29.3 0.2 1.8 2 0 0 2 2 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|110667481|ref|YP_657292.1| - 8.5e-07 29.2 0.1 1.7e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|110667481|ref|YP_657292.1| - 8.9e-07 28.9 3.8 9.8e-07 28.8 0.2 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|110667481|ref|YP_657292.1| - 1.9e-06 27.1 3.1 2.6e-06 26.6 0.1 2.5 2 1 0 2 2 2 1 Thi4 family HI0933_like PF03486.9 gi|110667481|ref|YP_657292.1| - 4.4e-05 22.1 1.4 4.4e-05 22.1 1.0 1.8 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|110667481|ref|YP_657292.1| - 0.00018 21.4 0.9 0.00018 21.4 0.6 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|110667481|ref|YP_657292.1| - 0.00028 21.2 10.4 0.0043 17.4 0.4 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|110667481|ref|YP_657292.1| - 0.0025 17.5 0.1 0.0052 16.4 0.1 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|110667481|ref|YP_657292.1| - 0.011 15.1 0.1 0.024 14.0 0.1 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.16 gi|110667481|ref|YP_657292.1| - 0.011 15.2 0.5 0.011 15.2 0.3 1.7 2 0 0 2 2 1 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.7 gi|110667481|ref|YP_657292.1| - 0.061 12.2 5.8 0.084 11.7 1.0 2.4 3 0 0 3 3 3 0 Lycopene cyclase protein GDI PF00996.13 gi|110667481|ref|YP_657292.1| - 0.13 10.5 0.2 9.4 4.4 0.1 2.1 2 0 0 2 2 2 0 GDP dissociation inhibitor PGM_PMM_I PF02878.11 gi|110667482|ref|YP_657293.1| - 4.9e-37 126.4 0.8 1.4e-35 121.7 0.1 2.2 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|110667482|ref|YP_657293.1| - 5.5e-23 81.2 0.0 1e-22 80.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|110667482|ref|YP_657293.1| - 0.013 15.4 0.1 0.025 14.6 0.0 1.4 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Acylphosphatase PF00708.13 gi|110667483|ref|YP_657294.1| - 9.2e-27 92.9 0.0 9.8e-27 92.8 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase GHMP_kinases_N PF00288.21 gi|110667485|ref|YP_657296.1| - 1.8e-05 24.7 5.2 7.7e-05 22.6 1.5 2.4 1 1 1 2 2 2 2 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|110667485|ref|YP_657296.1| - 0.076 13.2 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 GHMP kinases C terminal Pyr_redox PF00070.22 gi|110667486|ref|YP_657297.1| - 1.8e-11 44.2 0.1 1.1e-07 32.1 0.0 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|110667486|ref|YP_657297.1| - 7e-07 29.3 1.1 0.00015 21.6 0.0 2.3 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|110667486|ref|YP_657297.1| - 0.00024 21.0 0.1 1 9.3 0.0 3.2 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|110667486|ref|YP_657297.1| - 0.00036 20.3 0.6 0.23 11.2 0.0 2.9 3 0 0 3 3 3 2 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|110667486|ref|YP_657297.1| - 0.00056 20.0 0.4 0.038 14.0 0.3 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|110667486|ref|YP_657297.1| - 0.0012 17.7 0.1 0.45 9.3 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein TrkA_N PF02254.13 gi|110667486|ref|YP_657297.1| - 0.0025 17.7 0.4 1.4 8.8 0.0 2.8 2 0 0 2 2 2 2 TrkA-N domain DAO PF01266.19 gi|110667486|ref|YP_657297.1| - 0.0039 16.1 3.3 0.79 8.5 0.4 3.2 2 1 1 3 3 3 1 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|110667486|ref|YP_657297.1| - 0.039 13.3 0.1 0.12 11.7 0.0 1.9 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thi4 PF01946.12 gi|110667486|ref|YP_657297.1| - 0.058 12.4 0.2 1.1 8.2 0.0 2.4 2 0 0 2 2 2 0 Thi4 family MGS PF02142.17 gi|110667487|ref|YP_657298.1| - 6.2e-16 58.1 0.0 8.2e-16 57.7 0.0 1.2 1 0 0 1 1 1 1 MGS-like domain DUF371 PF04027.8 gi|110667489|ref|YP_657300.1| - 6.4e-53 177.9 1.1 7.7e-53 177.6 0.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF371) TPR_MLP1_2 PF07926.7 gi|110667490|ref|YP_657301.1| - 0.00048 19.8 13.7 0.00048 19.8 9.5 3.5 2 1 0 2 2 2 1 TPR/MLP1/MLP2-like protein AAA_27 PF13514.1 gi|110667490|ref|YP_657301.1| - 0.21 9.2 50.5 0.26 8.8 35.0 1.1 1 0 0 1 1 1 0 AAA domain COG2 PF06148.6 gi|110667490|ref|YP_657301.1| - 0.79 9.5 34.3 0.033 14.0 2.1 4.5 1 1 3 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF948 PF06103.6 gi|110667490|ref|YP_657301.1| - 1.2 9.0 20.3 3.5 7.5 1.8 4.2 1 1 3 4 4 4 0 Bacterial protein of unknown function (DUF948) DUF373 PF04123.8 gi|110667491|ref|YP_657302.1| - 2.4e-113 378.6 8.5 2.8e-113 378.4 5.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF3185 PF11381.3 gi|110667491|ref|YP_657302.1| - 0.037 13.7 5.5 2.2 8.1 0.0 3.4 3 1 0 3 3 3 0 Protein of unknown function (DUF3185) Aldo_ket_red PF00248.16 gi|110667492|ref|YP_657303.1| - 1.4e-63 214.3 0.0 1.6e-63 214.1 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Trp_halogenase PF04820.9 gi|110667493|ref|YP_657304.1| - 9e-14 50.9 3.8 5.9e-11 41.6 0.0 2.2 1 1 1 2 2 2 2 Tryptophan halogenase FAD_binding_3 PF01494.14 gi|110667493|ref|YP_657304.1| - 6.5e-12 45.1 3.3 1.1e-10 41.1 2.3 2.2 1 1 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.19 gi|110667493|ref|YP_657304.1| - 5.2e-10 38.7 6.0 7.1e-05 21.8 2.5 2.5 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|110667493|ref|YP_657304.1| - 7.3e-10 38.2 4.9 0.00017 20.6 0.0 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|110667493|ref|YP_657304.1| - 1.1e-09 37.9 7.1 2.8e-09 36.5 5.0 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|110667493|ref|YP_657304.1| - 2.2e-07 30.0 0.2 3.5e-07 29.4 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|110667493|ref|YP_657304.1| - 1.1e-05 25.3 0.2 2.3e-05 24.3 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|110667493|ref|YP_657304.1| - 1.2e-05 24.0 2.6 0.00018 20.1 0.6 2.2 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|110667493|ref|YP_657304.1| - 0.00051 19.1 0.7 0.0016 17.5 0.1 2.0 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.22 gi|110667493|ref|YP_657304.1| - 0.00086 19.6 1.4 0.53 10.7 0.3 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|110667493|ref|YP_657304.1| - 0.0028 17.7 0.5 0.0062 16.6 0.3 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|110667493|ref|YP_657304.1| - 0.018 15.0 0.5 0.053 13.5 0.3 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|110667493|ref|YP_657304.1| - 0.022 13.6 4.6 0.76 8.6 0.1 2.3 2 1 0 2 2 2 0 Lycopene cyclase protein AlaDh_PNT_C PF01262.16 gi|110667493|ref|YP_657304.1| - 0.034 13.7 0.1 0.062 12.8 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain GMC_oxred_N PF00732.14 gi|110667493|ref|YP_657304.1| - 0.048 12.8 0.1 5.4 6.0 0.0 2.2 2 0 0 2 2 2 0 GMC oxidoreductase TPP_enzyme_C PF02775.16 gi|110667494|ref|YP_657305.1| - 4.2e-31 107.6 0.2 6.3e-31 107.0 0.1 1.4 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|110667494|ref|YP_657305.1| - 1.3e-13 50.6 0.2 3e-13 49.4 0.1 1.7 2 0 0 2 2 2 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.14 gi|110667495|ref|YP_657306.1| - 3.2e-59 200.2 0.3 5.4e-59 199.4 0.2 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|110667495|ref|YP_657306.1| - 1.6e-41 142.1 0.1 3.1e-41 141.1 0.1 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|110667495|ref|YP_657306.1| - 6.5e-05 22.4 0.9 9.9e-05 21.8 0.2 1.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MsyB PF13984.1 gi|110667495|ref|YP_657306.1| - 0.026 14.5 0.1 0.064 13.2 0.1 1.6 1 0 0 1 1 1 0 MsyB protein FAD_binding_6 PF00970.19 gi|110667496|ref|YP_657307.1| - 4.2e-12 46.0 0.0 6.5e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain FAD_binding_9 PF08021.6 gi|110667496|ref|YP_657307.1| - 0.0048 16.8 0.0 0.015 15.2 0.0 1.9 1 1 0 1 1 1 1 Siderophore-interacting FAD-binding domain AMP-binding PF00501.23 gi|110667497|ref|YP_657308.1| - 4.7e-90 301.9 0.3 6.2e-90 301.5 0.2 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|110667497|ref|YP_657308.1| - 2.5e-17 63.5 0.1 6.1e-17 62.3 0.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DMRL_synthase PF00885.14 gi|110667497|ref|YP_657308.1| - 0.072 12.7 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 6,7-dimethyl-8-ribityllumazine synthase MMPL PF03176.10 gi|110667498|ref|YP_657309.1| - 1.9e-41 141.8 32.3 8.1e-23 80.6 6.3 2.6 3 0 0 3 3 3 2 MMPL family Patched PF02460.13 gi|110667498|ref|YP_657309.1| - 1.2e-13 49.9 21.7 1.3e-07 29.9 5.6 2.3 2 0 0 2 2 2 2 Patched family Sterol-sensing PF12349.3 gi|110667498|ref|YP_657309.1| - 1.6e-13 50.4 19.4 3.8e-09 36.1 0.5 3.1 3 0 0 3 3 3 2 Sterol-sensing domain of SREBP cleavage-activation ACR_tran PF00873.14 gi|110667498|ref|YP_657309.1| - 3.8e-10 37.8 21.4 1.2e-05 23.0 3.2 2.4 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family NPCBM_assoc PF10633.4 gi|110667499|ref|YP_657310.1| - 1.3e-19 69.9 11.0 7.3e-06 25.9 0.3 5.3 4 2 0 4 4 4 4 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|110667499|ref|YP_657310.1| - 7.1e-17 61.3 10.7 4.4e-07 29.8 1.0 4.2 4 1 0 4 4 4 3 CARDB TRAP_alpha PF03896.11 gi|110667499|ref|YP_657310.1| - 6.4e-06 25.3 0.5 0.027 13.4 0.0 2.5 2 0 0 2 2 2 2 Translocon-associated protein (TRAP), alpha subunit Fn3-like PF14310.1 gi|110667499|ref|YP_657310.1| - 5.8e-05 22.9 0.2 10 6.1 0.0 5.0 4 0 0 4 4 4 2 Fibronectin type III-like domain DUF11 PF01345.13 gi|110667499|ref|YP_657310.1| - 0.00015 21.7 10.6 0.31 11.1 0.1 4.9 4 0 0 4 4 4 3 Domain of unknown function DUF11 HTH_24 PF13412.1 gi|110667500|ref|YP_657311.1| - 1e-06 28.0 0.0 1.7e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|110667500|ref|YP_657311.1| - 2e-05 24.1 0.1 2.4e-05 23.8 0.1 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|110667500|ref|YP_657311.1| - 8.9e-05 21.8 0.2 0.00014 21.2 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|110667500|ref|YP_657311.1| - 0.0005 19.8 0.0 0.00074 19.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|110667500|ref|YP_657311.1| - 0.00072 19.0 0.0 0.00083 18.8 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_27 PF13463.1 gi|110667500|ref|YP_657311.1| - 0.0016 18.7 0.1 0.0022 18.2 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|110667500|ref|YP_657311.1| - 0.0022 17.6 0.1 0.0026 17.4 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|110667500|ref|YP_657311.1| - 0.0036 16.9 0.0 0.0048 16.5 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|110667500|ref|YP_657311.1| - 0.0039 16.8 0.0 0.0054 16.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.7 gi|110667500|ref|YP_657311.1| - 0.0078 15.6 0.0 0.014 14.8 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Rrf2 PF02082.15 gi|110667500|ref|YP_657311.1| - 0.02 15.0 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_28 PF13518.1 gi|110667500|ref|YP_657311.1| - 0.026 14.5 0.0 0.034 14.1 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|110667500|ref|YP_657311.1| - 0.072 12.7 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain MMPL PF03176.10 gi|110667501|ref|YP_657312.1| - 5.4e-33 114.0 20.9 2.7e-19 69.0 5.2 2.5 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|110667501|ref|YP_657312.1| - 1.5e-12 47.2 4.0 2.3e-08 33.6 0.3 2.9 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|110667501|ref|YP_657312.1| - 1.2e-08 33.3 22.6 5.8e-08 31.1 6.1 2.2 2 0 0 2 2 2 2 Patched family TMEM154 PF15102.1 gi|110667501|ref|YP_657312.1| - 8 6.1 7.6 62 3.2 0.0 3.4 2 1 0 2 2 2 0 TMEM154 protein family NPCBM_assoc PF10633.4 gi|110667502|ref|YP_657313.1| - 1e-10 41.5 15.7 0.0044 17.0 0.1 6.6 6 1 0 6 6 6 3 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|110667502|ref|YP_657313.1| - 1e-10 41.5 13.0 0.00016 21.6 0.0 5.2 3 1 1 4 4 4 4 CARDB DUF11 PF01345.13 gi|110667502|ref|YP_657313.1| - 6.7e-09 35.6 10.3 0.0064 16.5 0.2 4.8 4 1 1 5 5 5 2 Domain of unknown function DUF11 Transglut_C PF00927.17 gi|110667502|ref|YP_657313.1| - 6.2e-05 23.0 0.7 0.013 15.5 0.0 3.8 4 0 0 4 4 4 1 Transglutaminase family, C-terminal ig like domain DUF1081 PF06448.6 gi|110667502|ref|YP_657313.1| - 0.00087 19.1 3.5 0.02 14.7 0.1 3.3 2 1 0 2 2 2 1 Domain of Unknown Function (DUF1081) Alpha_adaptinC2 PF02883.15 gi|110667502|ref|YP_657313.1| - 0.015 15.6 2.7 0.82 10.0 0.6 2.7 1 1 2 3 3 3 0 Adaptin C-terminal domain Inhibitor_I42 PF09394.5 gi|110667502|ref|YP_657313.1| - 0.034 14.4 1.6 0.3 11.4 0.0 3.2 3 0 0 3 3 3 0 Chagasin family peptidase inhibitor I42 DUF4232 PF14016.1 gi|110667502|ref|YP_657313.1| - 0.34 10.5 9.7 11 5.6 0.1 4.5 3 1 0 4 4 4 0 Protein of unknown function (DUF4232) AAA PF00004.24 gi|110667503|ref|YP_657314.1| - 6.6e-46 155.7 2.5 1.8e-45 154.3 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|110667503|ref|YP_657314.1| - 2.8e-09 37.1 0.0 9e-09 35.4 0.0 1.9 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|110667503|ref|YP_657314.1| - 2.4e-07 30.5 0.2 3.1e-06 26.9 0.2 2.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|110667503|ref|YP_657314.1| - 6.3e-07 28.6 0.0 1.5e-06 27.4 0.0 1.7 2 0 0 2 2 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|110667503|ref|YP_657314.1| - 7.1e-07 29.3 3.8 2.7e-05 24.2 0.0 3.7 2 2 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|110667503|ref|YP_657314.1| - 1.4e-06 28.4 2.7 4.1e-05 23.7 0.1 2.9 2 2 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|110667503|ref|YP_657314.1| - 5e-06 27.3 0.3 2.8e-05 24.9 0.0 2.3 2 1 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|110667503|ref|YP_657314.1| - 5.9e-05 22.1 0.0 0.00013 20.9 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_14 PF13173.1 gi|110667503|ref|YP_657314.1| - 0.00012 21.9 0.2 0.00086 19.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|110667503|ref|YP_657314.1| - 0.00023 20.7 1.0 0.008 15.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|110667503|ref|YP_657314.1| - 0.00043 19.7 0.1 0.023 14.1 0.1 2.8 1 1 0 1 1 1 1 Sigma-54 interaction domain NACHT PF05729.7 gi|110667503|ref|YP_657314.1| - 0.00064 19.4 0.1 0.043 13.4 0.0 2.6 1 1 0 2 2 2 1 NACHT domain IstB_IS21 PF01695.12 gi|110667503|ref|YP_657314.1| - 0.00081 18.8 0.1 0.0025 17.2 0.0 1.9 2 0 0 2 2 2 1 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|110667503|ref|YP_657314.1| - 0.00094 18.4 0.2 0.0031 16.6 0.1 1.9 2 0 0 2 2 1 1 Magnesium chelatase, subunit ChlI TIP49 PF06068.8 gi|110667503|ref|YP_657314.1| - 0.001 17.8 0.7 0.0027 16.5 0.0 2.0 2 0 0 2 2 2 1 TIP49 C-terminus AAA_18 PF13238.1 gi|110667503|ref|YP_657314.1| - 0.001 19.3 0.4 0.014 15.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|110667503|ref|YP_657314.1| - 0.0013 18.4 0.2 0.0035 17.0 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain DUF4201 PF13870.1 gi|110667503|ref|YP_657314.1| - 0.0027 17.1 5.4 0.0048 16.3 3.7 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4201) AAA_33 PF13671.1 gi|110667503|ref|YP_657314.1| - 0.0028 17.5 0.0 0.0091 15.8 0.0 2.0 1 0 0 1 1 1 1 AAA domain GrpE PF01025.14 gi|110667503|ref|YP_657314.1| - 0.003 17.1 6.9 0.003 17.1 4.8 1.7 2 0 0 2 2 1 1 GrpE ATG16 PF08614.6 gi|110667503|ref|YP_657314.1| - 0.0037 17.1 10.0 0.0037 17.1 6.9 2.3 2 0 0 2 2 2 1 Autophagy protein 16 (ATG16) AAA_28 PF13521.1 gi|110667503|ref|YP_657314.1| - 0.0041 17.1 0.1 0.012 15.6 0.0 2.0 2 0 0 2 2 1 1 AAA domain Sigma54_activ_2 PF14532.1 gi|110667503|ref|YP_657314.1| - 0.0041 17.1 0.1 0.024 14.6 0.0 2.4 2 1 0 2 2 1 1 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|110667503|ref|YP_657314.1| - 0.0044 17.1 0.0 0.012 15.7 0.0 1.8 1 0 0 1 1 1 1 RNA helicase Zeta_toxin PF06414.7 gi|110667503|ref|YP_657314.1| - 0.0047 16.0 0.4 0.014 14.5 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin NTPase_1 PF03266.10 gi|110667503|ref|YP_657314.1| - 0.0051 16.5 5.2 0.3 10.7 0.2 3.6 2 2 1 3 3 3 1 NTPase Arch_ATPase PF01637.13 gi|110667503|ref|YP_657314.1| - 0.0059 16.3 2.0 0.068 12.8 0.0 2.8 2 1 0 2 2 2 1 Archaeal ATPase NB-ARC PF00931.17 gi|110667503|ref|YP_657314.1| - 0.0089 14.9 0.1 0.11 11.2 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain AAA_11 PF13086.1 gi|110667503|ref|YP_657314.1| - 0.0094 15.5 1.4 0.31 10.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.6 gi|110667503|ref|YP_657314.1| - 0.011 15.2 0.1 0.04 13.5 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Kinetocho_Slk19 PF12709.2 gi|110667503|ref|YP_657314.1| - 0.015 15.3 2.7 0.05 13.6 1.9 1.9 1 0 0 1 1 1 0 Central kinetochore-associated Parvo_NS1 PF01057.12 gi|110667503|ref|YP_657314.1| - 0.023 13.6 0.0 0.048 12.5 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Creatininase PF02633.9 gi|110667503|ref|YP_657314.1| - 0.023 13.7 0.0 0.04 12.9 0.0 1.3 1 0 0 1 1 1 0 Creatinine amidohydrolase KaiC PF06745.8 gi|110667503|ref|YP_657314.1| - 0.029 13.4 6.2 0.27 10.3 0.0 3.3 2 2 0 3 3 3 0 KaiC AAA_25 PF13481.1 gi|110667503|ref|YP_657314.1| - 0.031 13.6 10.2 0.038 13.3 0.1 3.3 3 1 1 4 4 3 0 AAA domain DUF2051 PF09738.4 gi|110667503|ref|YP_657314.1| - 0.036 13.3 12.0 0.013 14.7 6.4 1.6 2 0 0 2 2 2 0 Double stranded RNA binding protein (DUF2051) bZIP_1 PF00170.16 gi|110667503|ref|YP_657314.1| - 0.044 13.7 11.2 0.37 10.7 2.5 2.6 1 1 1 2 2 2 0 bZIP transcription factor RapA_C PF12137.3 gi|110667503|ref|YP_657314.1| - 0.06 12.1 8.8 0.63 8.8 3.9 2.9 2 1 0 3 3 3 0 RNA polymerase recycling family C-terminal APG6 PF04111.7 gi|110667503|ref|YP_657314.1| - 0.076 12.0 7.5 0.13 11.2 5.2 1.4 1 0 0 1 1 1 0 Autophagy protein Apg6 AAA_23 PF13476.1 gi|110667503|ref|YP_657314.1| - 0.099 12.9 9.1 4.2 7.6 0.0 2.5 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|110667503|ref|YP_657314.1| - 0.12 11.8 0.2 1.9 7.9 0.0 2.2 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain ABC_tran PF00005.22 gi|110667503|ref|YP_657314.1| - 0.17 12.1 5.1 0.2 11.9 0.0 2.7 2 1 0 2 2 1 0 ABC transporter IncA PF04156.9 gi|110667503|ref|YP_657314.1| - 0.25 10.8 14.3 1.1 8.7 8.8 2.1 1 1 1 2 2 2 0 IncA protein Fmp27_WPPW PF10359.4 gi|110667503|ref|YP_657314.1| - 0.44 8.8 7.4 0.85 7.9 5.1 1.4 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain eIF-4B PF06273.6 gi|110667503|ref|YP_657314.1| - 0.47 9.1 4.4 0.7 8.5 3.1 1.2 1 0 0 1 1 1 0 Plant specific eukaryotic initiation factor 4B Macoilin PF09726.4 gi|110667503|ref|YP_657314.1| - 0.47 8.6 6.4 0.68 8.1 4.5 1.2 1 0 0 1 1 1 0 Transmembrane protein Cep57_CLD_2 PF14197.1 gi|110667503|ref|YP_657314.1| - 2.1 8.3 13.8 0.63 10.0 7.3 1.8 2 0 0 2 2 1 0 Centrosome localisation domain of PPC89 Nup54 PF13874.1 gi|110667503|ref|YP_657314.1| - 2.8 7.6 10.0 5.4 6.6 6.0 2.2 2 1 0 2 2 1 0 Nucleoporin complex subunit 54 HhH-GPD PF00730.20 gi|110667504|ref|YP_657315.1| - 1.8e-23 82.8 0.0 1.1e-22 80.3 0.0 1.9 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|110667504|ref|YP_657315.1| - 3.1e-10 39.1 0.0 8.8e-10 37.7 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|110667504|ref|YP_657315.1| - 0.0024 17.9 2.2 0.0049 17.0 1.5 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|110667504|ref|YP_657315.1| - 0.0042 17.2 0.7 0.27 11.4 0.6 2.3 1 1 1 2 2 2 2 Helix-hairpin-helix domain DUF3349 PF11829.3 gi|110667504|ref|YP_657315.1| - 0.016 15.5 0.2 0.049 14.0 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3349) DUF4125 PF13526.1 gi|110667504|ref|YP_657315.1| - 0.11 12.0 0.2 0.29 10.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4125) IncA PF04156.9 gi|110667506|ref|YP_657317.1| - 0.009 15.6 0.2 0.025 14.1 0.0 1.7 2 0 0 2 2 2 1 IncA protein DUF3951 PF13131.1 gi|110667506|ref|YP_657317.1| - 0.15 11.8 1.7 0.28 10.9 1.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3951) Copper-bind PF00127.15 gi|110667507|ref|YP_657318.1| - 5.2e-13 49.0 0.1 1.3e-12 47.8 0.0 1.7 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Mucin PF01456.12 gi|110667507|ref|YP_657318.1| - 3.3 7.4 24.1 7.1 6.4 16.7 1.5 1 0 0 1 1 1 0 Mucin-like glycoprotein ABC2_membrane_4 PF12730.2 gi|110667508|ref|YP_657319.1| - 2.8 7.0 8.6 3.5 6.7 5.9 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Cytochrom_B_N_2 PF13631.1 gi|110667509|ref|YP_657320.1| - 1e-41 142.5 15.2 2.6e-41 141.2 8.3 2.1 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_N PF00033.14 gi|110667509|ref|YP_657320.1| - 9.6e-12 44.6 17.2 1.4e-11 44.1 11.9 1.2 1 0 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB PepSY_TM PF03929.11 gi|110667509|ref|YP_657320.1| - 0.074 13.4 0.1 0.074 13.4 0.0 3.8 3 1 0 3 3 3 0 PepSY-associated TM helix Cytochrom_B_C PF00032.12 gi|110667510|ref|YP_657321.1| - 1.4e-08 34.8 0.1 3.2e-08 33.7 0.0 1.6 1 1 0 1 1 1 1 Cytochrome b(C-terminal)/b6/petD MARVEL PF01284.18 gi|110667510|ref|YP_657321.1| - 0.17 11.7 4.8 0.47 10.2 3.3 1.8 1 1 0 1 1 1 0 Membrane-associating domain DUF1049 PF06305.6 gi|110667511|ref|YP_657322.1| - 0.21 11.1 1.6 0.32 10.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) EBP PF05241.7 gi|110667512|ref|YP_657323.1| - 0.98 8.3 4.6 0.91 8.4 2.1 1.6 1 1 0 2 2 2 0 Emopamil binding protein DUF3951 PF13131.1 gi|110667512|ref|YP_657323.1| - 3 7.6 5.7 5.1 6.9 3.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3951) Voltage_CLC PF00654.15 gi|110667513|ref|YP_657324.1| - 0.016 14.2 1.5 0.019 14.0 1.0 1.1 1 0 0 1 1 1 0 Voltage gated chloride channel Polysacc_synt_C PF14667.1 gi|110667513|ref|YP_657324.1| - 0.64 9.8 5.7 2 8.2 0.4 2.3 2 0 0 2 2 2 0 Polysaccharide biosynthesis C-terminal domain PRA1 PF03208.14 gi|110667513|ref|YP_657324.1| - 0.94 8.8 3.9 0.28 10.5 1.0 1.4 2 0 0 2 2 2 0 PRA1 family protein DUF202 PF02656.10 gi|110667513|ref|YP_657324.1| - 1.5 9.0 5.8 57 4.0 0.2 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF202) Abhydrolase_6 PF12697.2 gi|110667514|ref|YP_657325.1| - 6.5e-29 101.4 0.0 8e-29 101.1 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|110667514|ref|YP_657325.1| - 3.8e-12 46.1 0.0 3.2e-11 43.1 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|110667514|ref|YP_657325.1| - 0.00013 21.5 0.0 0.00079 19.0 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|110667514|ref|YP_657325.1| - 0.00059 19.6 0.0 0.0011 18.7 0.0 1.5 1 0 0 1 1 1 1 Putative lysophospholipase MTH865 PF07747.6 gi|110667515|ref|YP_657326.1| - 1.6e-21 75.7 0.1 1.8e-21 75.5 0.1 1.0 1 0 0 1 1 1 1 MTH865-like family Copper-bind PF00127.15 gi|110667516|ref|YP_657327.1| - 1.5e-12 47.5 0.0 2.7e-12 46.7 0.0 1.4 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupin_3 PF05899.7 gi|110667516|ref|YP_657327.1| - 0.022 14.1 0.4 0.042 13.2 0.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF861) TraT PF05818.7 gi|110667516|ref|YP_657327.1| - 0.024 14.0 2.7 0.037 13.4 1.9 1.3 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein Shadoo PF14999.1 gi|110667516|ref|YP_657327.1| - 0.038 13.8 1.1 0.066 13.0 0.8 1.4 1 0 0 1 1 1 0 Shadow of prion protein, neuroprotective Glycos_transf_1 PF00534.15 gi|110667517|ref|YP_657328.1| - 2e-15 56.6 0.0 3.3e-15 55.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|110667517|ref|YP_657328.1| - 1.6e-14 54.3 3.7 1.6e-14 54.3 2.6 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|110667517|ref|YP_657328.1| - 8.4e-08 32.1 0.0 1.6e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|110667517|ref|YP_657328.1| - 5.7e-05 22.9 0.0 0.00013 21.8 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase 4-like SMP PF04927.7 gi|110667517|ref|YP_657328.1| - 0.038 13.9 0.5 0.18 11.7 0.0 2.2 2 0 0 2 2 2 0 Seed maturation protein DUF506 PF04720.7 gi|110667517|ref|YP_657328.1| - 0.099 12.2 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF506) DUF420 PF04238.7 gi|110667518|ref|YP_657329.1| - 3.4e-40 137.0 7.2 3.4e-40 137.0 5.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF420) Orai-1 PF07856.7 gi|110667518|ref|YP_657329.1| - 0.0099 15.4 1.0 0.0099 15.4 0.7 2.5 2 1 2 4 4 4 1 Mediator of CRAC channel activity DUF2306 PF10067.4 gi|110667518|ref|YP_657329.1| - 0.043 13.9 14.6 0.094 12.8 2.7 3.2 2 1 0 3 3 3 0 Predicted membrane protein (DUF2306) PGG PF13962.1 gi|110667518|ref|YP_657329.1| - 0.055 13.0 3.2 0.75 9.4 0.1 2.6 3 0 0 3 3 3 0 Domain of unknown function CTP_transf_1 PF01148.15 gi|110667518|ref|YP_657329.1| - 0.86 9.2 11.7 2.7 7.5 8.1 2.0 1 1 0 1 1 1 0 Cytidylyltransferase family DUF2231 PF09990.4 gi|110667518|ref|YP_657329.1| - 0.86 9.9 13.9 0.18 12.1 3.3 2.7 2 2 0 2 2 2 0 Predicted membrane protein (DUF2231) DUF1240 PF06836.7 gi|110667518|ref|YP_657329.1| - 1.1 9.4 4.3 0.96 9.7 0.1 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF1240) DUF4029 PF13221.1 gi|110667518|ref|YP_657329.1| - 2.5 8.5 6.9 1.1 9.7 0.5 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF4029) Fe-ADH_2 PF13685.1 gi|110667519|ref|YP_657330.1| - 2e-58 197.6 1.3 2.5e-58 197.3 0.9 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|110667519|ref|YP_657330.1| - 2.6e-21 75.6 7.0 4.5e-21 74.9 4.8 1.3 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|110667519|ref|YP_657330.1| - 8.9e-10 37.9 0.2 2.5e-09 36.4 0.1 1.6 1 1 0 1 1 1 1 3-dehydroquinate synthase LysE PF01810.13 gi|110667520|ref|YP_657331.1| - 8.1e-29 100.2 12.1 3e-27 95.1 8.4 2.3 1 1 0 1 1 1 1 LysE type translocator Wzy_C PF04932.10 gi|110667520|ref|YP_657331.1| - 9.1 6.0 15.4 5.7 6.7 0.6 2.5 1 1 1 2 2 2 0 O-Antigen ligase UPF0016 PF01169.14 gi|110667521|ref|YP_657332.1| - 9.7e-24 83.3 17.7 2e-14 53.4 2.7 2.3 2 0 0 2 2 2 2 Uncharacterized protein family UPF0016 Fe_dep_repr_C PF02742.10 gi|110667522|ref|YP_657333.1| - 3.2e-27 94.0 0.1 6.5e-27 93.0 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain FeoA PF04023.9 gi|110667522|ref|YP_657333.1| - 8.1e-15 54.5 0.1 2.9e-14 52.7 0.1 2.0 2 0 0 2 2 2 1 FeoA domain Fe_dep_repress PF01325.14 gi|110667522|ref|YP_657333.1| - 1e-14 54.1 0.4 1.9e-14 53.3 0.3 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_15 PF12324.3 gi|110667522|ref|YP_657333.1| - 0.024 14.3 0.1 0.11 12.1 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase Topoisom_bac PF01131.15 gi|110667522|ref|YP_657333.1| - 0.038 12.8 0.1 0.056 12.2 0.1 1.2 1 0 0 1 1 1 0 DNA topoisomerase HrcA_DNA-bdg PF03444.10 gi|110667522|ref|YP_657333.1| - 0.041 13.3 0.0 0.18 11.2 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding MarR_2 PF12802.2 gi|110667522|ref|YP_657333.1| - 0.085 12.5 0.1 1.6 8.4 0.0 2.6 2 1 1 3 3 3 0 MarR family PALP PF00291.20 gi|110667523|ref|YP_657334.1| - 7.1e-56 189.6 3.9 8.4e-56 189.4 2.7 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PK_C PF02887.11 gi|110667523|ref|YP_657334.1| - 1.3 8.5 3.8 4.1 6.9 0.2 3.1 3 1 1 4 4 4 0 Pyruvate kinase, alpha/beta domain Amino_oxidase PF01593.19 gi|110667524|ref|YP_657335.1| - 4.8e-36 124.8 0.7 1.8e-35 122.8 0.5 1.7 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|110667524|ref|YP_657335.1| - 4.5e-16 58.6 0.3 1e-15 57.4 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|110667524|ref|YP_657335.1| - 1.4e-14 53.8 1.0 1.1e-07 31.1 0.2 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|110667524|ref|YP_657335.1| - 5.3e-08 31.7 1.3 1.9e-05 23.3 0.2 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.9 gi|110667524|ref|YP_657335.1| - 1.6e-07 31.4 1.7 2.8e-05 24.1 0.6 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|110667524|ref|YP_657335.1| - 1.1e-06 28.8 0.1 3.2e-05 24.0 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|110667524|ref|YP_657335.1| - 4.1e-06 25.9 2.0 8e-06 24.9 1.4 1.5 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|110667524|ref|YP_657335.1| - 1.8e-05 24.0 5.5 0.0004 19.5 2.0 2.9 3 0 0 3 3 3 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|110667524|ref|YP_657335.1| - 2.1e-05 23.7 0.2 4e-05 22.8 0.2 1.4 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|110667524|ref|YP_657335.1| - 0.00011 21.2 5.3 0.00014 20.8 0.7 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|110667524|ref|YP_657335.1| - 0.00011 21.9 3.3 0.13 12.0 0.2 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|110667524|ref|YP_657335.1| - 0.00037 20.8 1.4 0.0028 18.0 0.3 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|110667524|ref|YP_657335.1| - 0.00086 18.4 1.8 0.0012 18.0 0.4 1.9 2 0 0 2 2 2 1 FAD binding domain NAD_binding_7 PF13241.1 gi|110667524|ref|YP_657335.1| - 0.002 18.3 0.8 0.024 14.8 0.0 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|110667524|ref|YP_657335.1| - 0.0027 17.2 0.5 0.0027 17.2 0.3 1.6 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|110667524|ref|YP_657335.1| - 0.0031 17.1 1.2 0.0065 16.1 0.9 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|110667524|ref|YP_657335.1| - 0.0097 15.6 1.0 0.038 13.7 0.1 2.2 2 1 1 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FMO-like PF00743.14 gi|110667524|ref|YP_657335.1| - 0.024 12.8 0.0 0.042 12.0 0.0 1.3 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like Lycopene_cycl PF05834.7 gi|110667524|ref|YP_657335.1| - 0.21 10.4 2.4 0.11 11.3 0.2 1.5 2 0 0 2 2 2 0 Lycopene cyclase protein adh_short_C2 PF13561.1 gi|110667525|ref|YP_657336.1| - 1.1e-31 110.4 0.0 1.3e-31 110.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|110667525|ref|YP_657336.1| - 1.3e-21 77.2 0.0 1.9e-21 76.7 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|110667525|ref|YP_657336.1| - 2.3e-09 37.2 0.0 5.1e-08 32.7 0.0 2.1 2 0 0 2 2 2 1 KR domain NAD_binding_10 PF13460.1 gi|110667525|ref|YP_657336.1| - 3.5e-06 27.1 0.1 6e-06 26.3 0.0 1.4 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|110667525|ref|YP_657336.1| - 0.00036 20.0 0.0 0.00053 19.4 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Pyr_redox PF00070.22 gi|110667525|ref|YP_657336.1| - 0.014 15.8 0.1 0.031 14.6 0.1 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|110667525|ref|YP_657336.1| - 0.042 12.8 0.0 0.049 12.6 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Metallophos_2 PF12850.2 gi|110667526|ref|YP_657337.1| - 4.7e-08 33.0 0.1 5.7e-08 32.7 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|110667526|ref|YP_657337.1| - 5.4e-08 32.4 0.4 1e-07 31.5 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase MarR_2 PF12802.2 gi|110667527|ref|YP_657338.1| - 3.6e-10 39.3 0.1 1e-09 37.9 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|110667527|ref|YP_657338.1| - 4.3e-09 35.6 0.0 7.7e-09 34.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|110667527|ref|YP_657338.1| - 1.5e-07 31.0 0.0 3.7e-07 29.7 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|110667527|ref|YP_657338.1| - 1.4e-06 28.5 0.8 2.1e-05 24.7 0.0 2.8 3 0 0 3 3 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|110667527|ref|YP_657338.1| - 6.3e-05 22.6 0.0 0.00024 20.8 0.0 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|110667527|ref|YP_657338.1| - 0.00027 20.5 0.1 0.00063 19.3 0.0 1.6 2 0 0 2 2 2 1 HTH domain HTH_45 PF14947.1 gi|110667527|ref|YP_657338.1| - 0.00037 20.2 0.0 0.00081 19.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_IclR PF09339.5 gi|110667527|ref|YP_657338.1| - 0.0011 18.5 0.0 0.0021 17.5 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|110667527|ref|YP_657338.1| - 0.0015 18.1 0.0 0.0026 17.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|110667527|ref|YP_657338.1| - 0.002 17.7 0.1 0.0036 16.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|110667527|ref|YP_657338.1| - 0.0048 16.6 0.0 0.016 15.0 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|110667527|ref|YP_657338.1| - 0.0099 15.7 0.0 0.02 14.7 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|110667527|ref|YP_657338.1| - 0.01 15.9 0.0 0.034 14.2 0.0 1.8 2 0 0 2 2 1 0 Transcriptional regulator Mrr_N PF14338.1 gi|110667527|ref|YP_657338.1| - 0.013 15.5 0.0 0.032 14.3 0.0 1.6 1 1 1 2 2 2 0 Mrr N-terminal domain HTH_34 PF13601.1 gi|110667527|ref|YP_657338.1| - 0.03 14.3 0.0 0.063 13.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|110667527|ref|YP_657338.1| - 0.071 12.7 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain LacI PF00356.16 gi|110667527|ref|YP_657338.1| - 0.077 12.6 0.1 0.22 11.1 0.1 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family FaeA PF04703.7 gi|110667527|ref|YP_657338.1| - 0.08 13.1 0.1 0.21 11.7 0.1 1.6 1 0 0 1 1 1 0 FaeA-like protein GntR PF00392.16 gi|110667527|ref|YP_657338.1| - 0.081 12.3 0.0 0.21 11.0 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DnaJ PF00226.26 gi|110667528|ref|YP_657339.1| - 4.6e-12 45.4 0.1 1e-11 44.3 0.0 1.5 1 1 1 2 2 2 1 DnaJ domain DUF993 PF06187.6 gi|110667528|ref|YP_657339.1| - 0.11 11.0 0.1 0.16 10.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF993) PPDK_N PF01326.14 gi|110667529|ref|YP_657340.1| - 2.7e-102 342.2 3.7 4.6e-102 341.4 2.5 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|110667529|ref|YP_657340.1| - 5.1e-82 275.0 0.1 8e-82 274.4 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|110667529|ref|YP_657340.1| - 1.7e-26 91.5 2.6 2.1e-26 91.2 0.9 1.8 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain AP_endonuc_2 PF01261.19 gi|110667529|ref|YP_657340.1| - 0.0002 20.7 0.1 0.0045 16.3 0.0 3.1 2 1 0 2 2 2 1 Xylose isomerase-like TIM barrel PEP-utilisers_N PF05524.8 gi|110667529|ref|YP_657340.1| - 0.06 13.1 1.7 1 9.1 0.0 3.0 3 0 0 3 3 3 0 PEP-utilising enzyme, N-terminal SNARE_assoc PF09335.6 gi|110667530|ref|YP_657341.1| - 7.7e-11 42.2 5.0 2.1e-10 40.8 3.3 1.8 1 1 1 2 2 2 1 SNARE associated Golgi protein tRNA-synt_1g PF09334.6 gi|110667531|ref|YP_657342.1| - 1.3e-132 442.1 0.0 2.3e-130 434.7 0.0 2.4 2 1 0 2 2 2 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|110667531|ref|YP_657342.1| - 1.9e-20 72.4 0.0 3.1e-20 71.8 0.0 1.3 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|110667531|ref|YP_657342.1| - 1.2e-14 53.2 0.0 2.1e-08 32.6 0.0 3.7 3 1 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|110667531|ref|YP_657342.1| - 2.2e-10 40.1 0.0 3.7e-07 29.5 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.8 gi|110667531|ref|YP_657342.1| - 8.5e-08 32.1 0.0 1.5e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1d PF00750.14 gi|110667531|ref|YP_657342.1| - 0.00091 18.1 0.4 0.13 11.0 0.1 2.5 1 1 0 2 2 2 2 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|110667531|ref|YP_657342.1| - 0.0093 14.6 0.0 0.21 10.1 0.0 2.6 2 1 0 3 3 3 1 tRNA synthetases class I (K) Mpt_N PF09176.6 gi|110667531|ref|YP_657342.1| - 0.039 13.8 0.0 0.096 12.5 0.0 1.6 1 0 0 1 1 1 0 Methylene-tetrahydromethanopterin dehydrogenase, N-terminal PK PF00224.16 gi|110667532|ref|YP_657343.1| - 2.9e-111 371.4 6.7 4.6e-111 370.7 4.7 1.3 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|110667532|ref|YP_657343.1| - 4.5e-34 116.4 0.8 4.5e-34 116.4 0.6 1.9 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.18 gi|110667532|ref|YP_657343.1| - 4.9e-10 38.8 0.1 4.9e-10 38.8 0.1 3.3 4 0 0 4 4 4 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.9 gi|110667532|ref|YP_657343.1| - 0.0076 15.1 2.6 0.02 13.8 1.5 1.9 1 1 1 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Trypan_PARP PF05887.6 gi|110667533|ref|YP_657344.1| - 0.093 12.5 5.9 0.11 12.3 4.1 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) NfeD PF01957.13 gi|110667534|ref|YP_657345.1| - 4.8e-13 49.4 0.4 6.8e-13 48.9 0.3 1.1 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding DUF533 PF04391.7 gi|110667534|ref|YP_657345.1| - 0.19 11.0 0.0 0.19 11.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF533) BNIP3 PF06553.7 gi|110667534|ref|YP_657345.1| - 1.2 8.5 7.4 0.11 11.9 1.8 1.6 2 0 0 2 2 2 0 BNIP3 Trypan_PARP PF05887.6 gi|110667534|ref|YP_657345.1| - 2.5 7.9 10.6 4 7.2 7.4 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) UbiA PF01040.13 gi|110667536|ref|YP_657347.1| - 2.2e-27 95.9 25.3 2.2e-27 95.9 17.5 2.5 2 1 0 2 2 2 1 UbiA prenyltransferase family COX15-CtaA PF02628.10 gi|110667536|ref|YP_657347.1| - 1.2e-14 53.9 11.4 1.2e-14 53.9 7.9 3.1 2 1 1 3 3 3 1 Cytochrome oxidase assembly protein COX2 PF00116.15 gi|110667537|ref|YP_657348.1| - 5.7e-22 77.7 2.7 3.5e-21 75.2 0.2 2.2 1 1 1 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.10 gi|110667537|ref|YP_657348.1| - 9.4e-09 35.1 0.0 1.6e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain CTP_transf_2 PF01467.21 gi|110667538|ref|YP_657349.1| - 5.1e-08 33.1 0.5 1.1e-07 32.0 0.3 1.8 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|110667538|ref|YP_657349.1| - 0.015 14.8 0.0 0.049 13.2 0.0 1.8 2 0 0 2 2 2 0 FAD synthetase Prok-JAB PF14464.1 gi|110667539|ref|YP_657350.1| - 7.2e-15 54.4 0.0 1.6e-14 53.3 0.0 1.5 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|110667539|ref|YP_657350.1| - 0.0072 16.0 0.5 0.017 14.8 0.0 1.9 2 1 0 2 2 2 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease RadC PF04002.10 gi|110667539|ref|YP_657350.1| - 0.039 13.6 0.0 0.074 12.7 0.0 1.5 1 0 0 1 1 1 0 RadC-like JAB domain DHH PF01368.15 gi|110667540|ref|YP_657351.1| - 1.4e-08 34.5 0.0 2.8e-08 33.5 0.0 1.5 1 0 0 1 1 1 1 DHH family tRNA_anti-codon PF01336.20 gi|110667540|ref|YP_657351.1| - 1.7e-07 30.9 0.0 3.2e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|110667540|ref|YP_657351.1| - 4.4e-05 23.4 1.6 0.00012 22.1 0.1 2.2 2 0 0 2 2 2 1 S1 RNA binding domain Nitroreductase PF00881.19 gi|110667541|ref|YP_657352.1| - 2.3e-23 82.8 0.0 3e-23 82.4 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family Sigma70_r4_2 PF08281.7 gi|110667541|ref|YP_657352.1| - 0.089 12.2 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 PLDc_2 PF13091.1 gi|110667542|ref|YP_657353.1| - 5e-33 113.5 0.0 2.1e-17 63.0 0.0 2.3 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.17 gi|110667542|ref|YP_657353.1| - 1.8e-05 24.3 2.7 4.3e-05 23.1 0.1 2.8 3 0 0 3 3 3 1 Phospholipase D Active site motif DUF1669 PF07894.7 gi|110667542|ref|YP_657353.1| - 0.083 12.0 0.0 0.45 9.6 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1669) HEAT_2 PF13646.1 gi|110667543|ref|YP_657354.1| - 2.6e-20 72.4 3.2 7.4e-12 45.3 1.3 3.7 1 1 2 3 3 3 2 HEAT repeats HEAT_PBS PF03130.11 gi|110667543|ref|YP_657354.1| - 4.8e-11 42.0 16.8 0.006 16.9 0.1 6.7 8 1 0 8 8 8 3 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|110667543|ref|YP_657354.1| - 1.4e-08 34.9 0.5 8.6e-05 22.8 0.6 4.1 3 1 1 4 4 4 1 HEAT-like repeat HEAT PF02985.17 gi|110667543|ref|YP_657354.1| - 6.6e-05 22.6 0.0 0.009 16.0 0.0 3.9 4 0 0 4 4 4 1 HEAT repeat Arm PF00514.18 gi|110667543|ref|YP_657354.1| - 0.0003 20.4 0.0 0.052 13.3 0.0 3.2 3 1 1 4 4 4 1 Armadillo/beta-catenin-like repeat HSBP1 PF06825.7 gi|110667543|ref|YP_657354.1| - 0.02 14.4 0.1 10 5.8 0.0 3.0 2 1 0 2 2 2 0 Heat shock factor binding protein 1 DNA_alkylation PF08713.6 gi|110667543|ref|YP_657354.1| - 0.022 14.3 0.5 0.083 12.3 0.0 2.1 2 0 0 2 2 2 0 DNA alkylation repair enzyme Tropomyosin_1 PF12718.2 gi|110667543|ref|YP_657354.1| - 6.6 6.5 11.6 0.54 10.1 1.8 3.0 3 0 0 3 3 3 0 Tropomyosin like Peripla_BP_2 PF01497.13 gi|110667544|ref|YP_657355.1| - 9.4e-27 93.6 0.0 1.3e-26 93.2 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Ferritin PF00210.19 gi|110667545|ref|YP_657356.1| - 1.1e-27 96.5 2.1 1.2e-27 96.3 1.5 1.0 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|110667545|ref|YP_657356.1| - 0.00047 20.3 1.1 0.018 15.2 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) DUF4003 PF13170.1 gi|110667545|ref|YP_657356.1| - 0.012 14.8 0.2 0.021 14.1 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4003) DUF892 PF05974.7 gi|110667545|ref|YP_657356.1| - 0.033 14.0 1.4 0.31 10.8 0.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF892) DUF4525 PF15027.1 gi|110667547|ref|YP_657358.1| - 0.11 11.9 0.2 0.29 10.6 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4525) DUF35 PF01796.12 gi|110667548|ref|YP_657359.1| - 4.8e-06 26.7 0.5 7.4e-06 26.1 0.4 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain Thiolase_C PF02803.13 gi|110667549|ref|YP_657360.1| - 2.7e-08 33.2 0.1 7.5e-08 31.8 0.0 1.7 1 0 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|110667549|ref|YP_657360.1| - 8.5e-05 21.6 0.1 0.00016 20.8 0.1 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|110667549|ref|YP_657360.1| - 0.00091 19.0 0.9 4.7 7.0 0.0 3.3 3 0 0 3 3 3 2 Beta-ketoacyl synthase, C-terminal domain FixH PF05751.6 gi|110667550|ref|YP_657361.1| - 0.08 12.7 0.2 0.18 11.5 0.2 1.5 1 0 0 1 1 1 0 FixH Pyr_redox_2 PF07992.9 gi|110667551|ref|YP_657362.1| - 2.2e-22 79.9 0.0 2.9e-22 79.5 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|110667551|ref|YP_657362.1| - 3.4e-07 29.4 1.9 0.00013 21.0 0.8 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|110667551|ref|YP_657362.1| - 2.6e-06 26.5 1.9 0.0005 19.0 0.5 2.3 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_3 PF13738.1 gi|110667551|ref|YP_657362.1| - 1.5e-05 25.1 0.1 0.041 13.9 0.4 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|110667551|ref|YP_657362.1| - 2.5e-05 23.3 0.5 0.00023 20.1 0.3 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|110667551|ref|YP_657362.1| - 4.3e-05 23.8 0.1 0.0054 17.1 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|110667551|ref|YP_657362.1| - 0.00033 19.2 0.2 0.0034 15.9 0.2 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.2 gi|110667551|ref|YP_657362.1| - 0.00069 18.8 0.7 0.00069 18.8 0.5 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|110667551|ref|YP_657362.1| - 0.0014 17.7 0.4 0.0024 16.9 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|110667551|ref|YP_657362.1| - 0.0048 16.0 0.1 0.01 14.9 0.1 1.5 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.1 gi|110667551|ref|YP_657362.1| - 0.0078 16.2 0.9 0.013 15.5 0.2 1.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|110667551|ref|YP_657362.1| - 0.014 15.1 0.1 0.27 11.0 0.0 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding K_oxygenase PF13434.1 gi|110667551|ref|YP_657362.1| - 0.048 12.5 0.0 0.16 10.8 0.0 1.7 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.16 gi|110667551|ref|YP_657362.1| - 0.094 12.2 0.1 0.19 11.2 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF4131 PF13567.1 gi|110667553|ref|YP_657364.1| - 0.46 9.8 2.5 3.9 6.8 0.4 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) Peptidase_S24 PF00717.18 gi|110667554|ref|YP_657365.1| - 3.9e-07 29.6 0.1 3.2e-06 26.6 0.0 2.4 2 0 0 2 2 2 1 Peptidase S24-like CopD PF05425.8 gi|110667554|ref|YP_657365.1| - 7.2 6.8 8.9 0.29 11.3 1.9 1.8 2 0 0 2 2 2 0 Copper resistance protein D Pertactin PF03212.9 gi|110667555|ref|YP_657366.1| - 0.3 10.8 8.7 0.091 12.4 1.8 3.0 3 0 0 3 3 3 0 Pertactin DUF668 PF05003.7 gi|110667558|ref|YP_657369.1| - 0.11 12.7 0.0 0.23 11.6 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF668) FTP PF07504.8 gi|110667559|ref|YP_657370.1| - 0.068 12.6 5.8 0.47 9.9 0.7 3.0 2 1 1 3 3 3 0 Fungalysin/Thermolysin Propeptide Motif Big_3 PF07523.7 gi|110667559|ref|YP_657370.1| - 0.44 10.6 4.6 10 6.3 1.4 2.3 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) Pilin PF00114.14 gi|110667559|ref|YP_657370.1| - 6.4 7.5 8.9 1.6 9.4 1.9 2.2 1 1 1 2 2 2 0 Pilin (bacterial filament) Methyltransf_11 PF08241.7 gi|110667560|ref|YP_657371.1| - 6.4e-17 61.8 0.0 9.7e-17 61.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|110667560|ref|YP_657371.1| - 6.8e-14 52.0 0.0 1.2e-13 51.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|110667560|ref|YP_657371.1| - 2.8e-13 49.7 0.0 3.9e-13 49.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|110667560|ref|YP_657371.1| - 9.1e-11 42.3 0.1 1.3e-10 41.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|110667560|ref|YP_657371.1| - 1e-10 41.9 0.1 1.8e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|110667560|ref|YP_657371.1| - 3.3e-08 32.9 0.0 4.2e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|110667560|ref|YP_657371.1| - 9.6e-08 31.9 0.0 1.1e-07 31.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|110667560|ref|YP_657371.1| - 1.7e-07 31.3 0.1 2.6e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|110667560|ref|YP_657371.1| - 1.5e-05 24.1 0.0 2.1e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase CMAS PF02353.15 gi|110667560|ref|YP_657371.1| - 0.00045 19.3 0.0 0.00066 18.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.1 gi|110667560|ref|YP_657371.1| - 0.0019 17.8 0.0 0.0027 17.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|110667560|ref|YP_657371.1| - 0.0039 16.7 0.0 0.0056 16.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|110667560|ref|YP_657371.1| - 0.0047 16.3 0.0 0.0071 15.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.10 gi|110667560|ref|YP_657371.1| - 0.011 15.4 0.0 0.14 11.7 0.0 2.0 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_9 PF08003.6 gi|110667560|ref|YP_657371.1| - 0.02 13.5 0.0 0.028 13.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_5 PF01795.14 gi|110667560|ref|YP_657371.1| - 0.051 12.8 0.0 0.096 11.9 0.0 1.4 2 0 0 2 2 2 0 MraW methylase family zinc_ribbon_6 PF14599.1 gi|110667561|ref|YP_657372.1| - 0.028 14.2 2.5 1.7 8.5 0.1 2.3 1 1 1 2 2 2 0 Zinc-ribbon DNA_RNApol_7kD PF03604.8 gi|110667561|ref|YP_657372.1| - 0.099 12.1 2.3 0.17 11.3 1.6 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Lar_restr_allev PF14354.1 gi|110667561|ref|YP_657372.1| - 0.16 12.3 1.3 0.32 11.3 0.9 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar FYDLN_acid PF09538.5 gi|110667561|ref|YP_657372.1| - 0.29 11.7 5.6 0.44 11.1 3.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) TP_methylase PF00590.15 gi|110667562|ref|YP_657373.1| - 5.2e-20 72.0 0.9 5.2e-20 72.0 0.6 1.6 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Exosortase_EpsH PF09721.5 gi|110667563|ref|YP_657374.1| - 8.9e-53 179.1 26.4 1.1e-52 178.8 18.3 1.0 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) PgaD PF13994.1 gi|110667563|ref|YP_657374.1| - 1.6 8.2 5.8 0.26 10.7 0.7 2.2 2 1 0 2 2 2 0 PgaD-like protein Glyoxalase_2 PF12681.2 gi|110667564|ref|YP_657375.1| - 5.1e-25 88.1 4.9 6.7e-15 55.6 0.1 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|110667564|ref|YP_657375.1| - 2.6e-17 63.0 4.0 7.3e-12 45.3 0.2 2.7 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|110667564|ref|YP_657375.1| - 3.7e-14 52.6 4.1 8.1e-06 25.8 0.2 3.6 2 2 2 4 4 4 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|110667564|ref|YP_657375.1| - 2.2e-05 24.4 2.2 0.051 13.4 0.1 3.8 2 2 0 2 2 2 2 Glyoxalase-like domain Fis1_TPR_N PF14852.1 gi|110667565|ref|YP_657376.1| - 0.11 11.8 0.0 1.2 8.5 0.0 2.1 2 0 0 2 2 2 0 Fis1 N-terminal tetratricopeptide repeat MMR_HSR1 PF01926.18 gi|110667566|ref|YP_657377.1| - 1.1e-20 73.7 0.0 2.2e-20 72.7 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|110667566|ref|YP_657377.1| - 2.4e-13 49.6 0.8 1.3e-12 47.3 0.0 2.2 2 0 0 2 2 2 1 Ferrous iron transport protein B TGS PF02824.16 gi|110667566|ref|YP_657377.1| - 2.6e-12 46.3 0.0 5e-12 45.4 0.0 1.5 1 0 0 1 1 1 1 TGS domain Dynamin_N PF00350.18 gi|110667566|ref|YP_657377.1| - 0.00035 20.4 0.0 0.56 9.9 0.1 2.5 1 1 1 2 2 2 2 Dynamin family AIG1 PF04548.11 gi|110667566|ref|YP_657377.1| - 0.00046 19.3 0.1 0.00093 18.3 0.0 1.6 2 0 0 2 2 2 1 AIG1 family ArgK PF03308.11 gi|110667566|ref|YP_657377.1| - 0.0046 15.7 0.1 0.02 13.6 0.0 2.1 2 1 0 2 2 2 1 ArgK protein DUF258 PF03193.11 gi|110667566|ref|YP_657377.1| - 0.0049 16.0 0.0 0.027 13.6 0.0 2.4 3 0 0 3 3 3 1 Protein of unknown function, DUF258 Miro PF08477.8 gi|110667566|ref|YP_657377.1| - 0.0072 16.8 0.0 0.025 15.0 0.0 2.0 2 1 0 2 2 1 1 Miro-like protein GTP_EFTU PF00009.22 gi|110667566|ref|YP_657377.1| - 0.021 14.2 0.1 1.1 8.6 0.0 3.0 2 1 1 3 3 3 0 Elongation factor Tu GTP binding domain cobW PF02492.14 gi|110667566|ref|YP_657377.1| - 0.027 13.9 0.4 2.7 7.3 0.0 2.7 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain Arf PF00025.16 gi|110667566|ref|YP_657377.1| - 0.047 12.9 0.1 0.22 10.7 0.0 2.1 2 1 0 2 2 2 0 ADP-ribosylation factor family MobB PF03205.9 gi|110667566|ref|YP_657377.1| - 0.057 13.1 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|110667566|ref|YP_657377.1| - 0.065 12.7 0.0 8.9 5.7 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein PduV-EutP PF10662.4 gi|110667566|ref|YP_657377.1| - 0.13 11.7 0.0 1.3 8.5 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation DUF4173 PF13777.1 gi|110667568|ref|YP_657379.1| - 0.019 14.2 2.5 0.024 13.9 1.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4173) Cyt_c_ox_IV PF12270.3 gi|110667568|ref|YP_657379.1| - 0.041 13.6 0.3 0.041 13.6 0.2 2.2 1 1 1 2 2 2 0 Cytochrome c oxidase subunit IV DUF4345 PF14248.1 gi|110667568|ref|YP_657379.1| - 0.059 12.8 10.2 0.094 12.1 7.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4345) Peptidase_A8 PF01252.13 gi|110667568|ref|YP_657379.1| - 0.31 10.6 2.3 0.35 10.4 1.3 1.3 1 1 0 1 1 1 0 Signal peptidase (SPase) II DUF3325 PF11804.3 gi|110667568|ref|YP_657379.1| - 0.9 9.5 11.3 1.2 9.1 7.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3325) Wzy_C PF04932.10 gi|110667568|ref|YP_657379.1| - 4.4 7.0 6.0 7.4 6.3 4.2 1.5 1 1 0 1 1 1 0 O-Antigen ligase AzlD PF05437.7 gi|110667569|ref|YP_657380.1| - 0.036 14.0 1.2 0.045 13.6 0.8 1.2 1 0 0 1 1 1 0 Branched-chain amino acid transport protein (AzlD) DUF4131 PF13567.1 gi|110667569|ref|YP_657380.1| - 0.044 13.1 0.0 0.05 13.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) COX1 PF00115.15 gi|110667570|ref|YP_657381.1| - 3.4e-156 520.3 59.8 3.4e-156 520.3 41.4 1.4 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I Pex14_N PF04695.8 gi|110667571|ref|YP_657382.1| - 0.00023 21.2 1.7 0.00027 20.9 1.2 1.2 1 0 0 1 1 1 1 Peroxisomal membrane anchor protein (Pex14p) conserved region Sporozoite_P67 PF05642.6 gi|110667571|ref|YP_657382.1| - 0.11 10.2 2.0 0.13 10.1 1.4 1.0 1 0 0 1 1 1 0 Sporozoite P67 surface antigen PrgI PF12666.2 gi|110667571|ref|YP_657382.1| - 0.13 12.4 1.5 0.23 11.6 1.1 1.4 1 1 0 1 1 1 0 PrgI family protein Kei1 PF08552.6 gi|110667571|ref|YP_657382.1| - 1.2 8.7 3.6 2 8.0 2.5 1.3 1 0 0 1 1 1 0 Inositolphosphorylceramide synthase subunit Kei1 Usp PF00582.21 gi|110667572|ref|YP_657383.1| - 6.1e-22 78.3 0.3 7.2e-22 78.1 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family Thioredoxin PF00085.15 gi|110667573|ref|YP_657384.1| - 7e-11 41.7 0.0 1.2e-10 40.9 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Methyltransf_22 PF13383.1 gi|110667573|ref|YP_657384.1| - 0.017 14.6 0.3 0.25 10.8 0.0 2.1 1 1 1 2 2 2 0 Methyltransferase domain ABC_tran PF00005.22 gi|110667574|ref|YP_657385.1| - 1e-29 103.6 0.0 1.6e-29 102.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110667574|ref|YP_657385.1| - 5.7e-08 33.0 0.1 4.3e-05 23.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|110667574|ref|YP_657385.1| - 0.0006 19.6 0.3 0.004 17.0 0.2 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|110667574|ref|YP_657385.1| - 0.00093 19.5 0.0 0.0015 18.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|110667574|ref|YP_657385.1| - 0.0033 17.1 0.4 0.73 9.6 0.1 2.5 2 0 0 2 2 2 1 Part of AAA domain AAA_22 PF13401.1 gi|110667574|ref|YP_657385.1| - 0.0047 17.0 0.3 0.24 11.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|110667574|ref|YP_657385.1| - 0.006 16.0 0.8 0.14 11.5 0.6 2.2 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|110667574|ref|YP_657385.1| - 0.0074 14.8 0.2 0.056 11.9 0.0 2.2 2 1 0 3 3 3 1 AAA domain AAA_29 PF13555.1 gi|110667574|ref|YP_657385.1| - 0.012 15.1 0.0 0.025 14.1 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain UPF0079 PF02367.12 gi|110667574|ref|YP_657385.1| - 0.019 14.5 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 SMC_N PF02463.14 gi|110667574|ref|YP_657385.1| - 0.024 13.8 0.4 1.1 8.4 0.3 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.4 gi|110667574|ref|YP_657385.1| - 0.066 11.7 1.0 4.6 5.7 0.0 2.4 3 0 0 3 3 3 0 Predicted ATPase of the ABC class AAA_16 PF13191.1 gi|110667574|ref|YP_657385.1| - 0.072 13.0 0.5 0.25 11.2 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain DUF258 PF03193.11 gi|110667574|ref|YP_657385.1| - 0.12 11.5 0.0 0.21 10.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Miro PF08477.8 gi|110667574|ref|YP_657385.1| - 0.13 12.8 0.0 0.31 11.5 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein SRP54 PF00448.17 gi|110667574|ref|YP_657385.1| - 0.13 11.6 0.3 0.31 10.4 0.1 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain NACHT PF05729.7 gi|110667574|ref|YP_657385.1| - 0.14 11.8 0.2 0.49 10.0 0.0 1.8 2 0 0 2 2 2 0 NACHT domain NB-ARC PF00931.17 gi|110667574|ref|YP_657385.1| - 0.14 10.9 0.0 0.25 10.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.1 gi|110667574|ref|YP_657385.1| - 0.22 11.1 0.1 0.22 11.1 0.1 1.8 3 0 0 3 3 3 0 AAA domain ABC_tran PF00005.22 gi|110667575|ref|YP_657386.1| - 2.8e-30 105.4 0.0 3.7e-30 105.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|110667575|ref|YP_657386.1| - 7.5e-12 44.6 0.8 1.6e-11 43.6 0.5 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.1 gi|110667575|ref|YP_657386.1| - 1.1e-07 32.1 0.3 0.0019 18.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|110667575|ref|YP_657386.1| - 4.8e-06 26.0 0.0 8.5e-06 25.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|110667575|ref|YP_657386.1| - 0.00042 20.2 0.2 0.0017 18.3 0.2 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_16 PF13191.1 gi|110667575|ref|YP_657386.1| - 0.00061 19.8 0.1 0.025 14.5 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|110667575|ref|YP_657386.1| - 0.00063 18.9 0.0 0.00099 18.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|110667575|ref|YP_657386.1| - 0.0063 16.8 0.0 0.0095 16.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|110667575|ref|YP_657386.1| - 0.0067 17.2 0.0 0.021 15.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|110667575|ref|YP_657386.1| - 0.01 14.8 0.2 0.17 10.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|110667575|ref|YP_657386.1| - 0.049 13.7 0.0 0.089 12.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|110667575|ref|YP_657386.1| - 0.052 12.9 0.0 0.094 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_19 PF13245.1 gi|110667575|ref|YP_657386.1| - 0.053 13.2 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain DUF87 PF01935.12 gi|110667575|ref|YP_657386.1| - 0.057 13.2 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 SMC_N PF02463.14 gi|110667575|ref|YP_657386.1| - 0.063 12.4 0.5 0.13 11.4 0.3 1.8 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain RNA_helicase PF00910.17 gi|110667575|ref|YP_657386.1| - 0.066 13.3 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.7 gi|110667575|ref|YP_657386.1| - 0.079 12.0 0.0 0.14 11.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.24 gi|110667575|ref|YP_657386.1| - 0.087 13.0 0.0 0.21 11.7 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.1 gi|110667575|ref|YP_657386.1| - 0.19 10.1 0.0 0.24 9.8 0.0 1.1 1 0 0 1 1 1 0 AAA domain BPD_transp_2 PF02653.11 gi|110667576|ref|YP_657387.1| - 1.4e-34 119.2 36.6 1.9e-34 118.8 24.8 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|110667577|ref|YP_657388.1| - 1.7e-31 109.1 37.3 2.4e-31 108.7 25.9 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.1 gi|110667578|ref|YP_657389.1| - 2.8e-59 201.1 9.3 3.7e-59 200.8 6.5 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|110667578|ref|YP_657389.1| - 1e-19 70.5 0.2 1.5e-19 70.0 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|110667578|ref|YP_657389.1| - 2.5e-09 36.3 0.8 4.1e-09 35.6 0.5 1.3 1 0 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.4 gi|110667578|ref|YP_657389.1| - 0.32 11.1 6.3 2.9 8.1 4.4 2.6 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Acetyltransf_1 PF00583.19 gi|110667579|ref|YP_657390.1| - 1.8e-13 50.3 0.0 3.1e-13 49.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|110667579|ref|YP_657390.1| - 3e-10 40.2 0.1 7.4e-10 38.9 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|110667579|ref|YP_657390.1| - 3.6e-09 36.6 0.0 7.4e-09 35.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|110667579|ref|YP_657390.1| - 2e-06 27.8 0.0 3.2e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|110667579|ref|YP_657390.1| - 0.00011 21.9 0.0 0.0002 21.0 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|110667579|ref|YP_657390.1| - 0.00032 20.8 0.0 0.00049 20.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|110667579|ref|YP_657390.1| - 0.03 14.1 0.2 0.14 12.0 0.0 2.2 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain Polyketide_cyc2 PF10604.4 gi|110667580|ref|YP_657391.1| - 0.0015 18.7 0.7 0.0018 18.4 0.5 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Thioredoxin_4 PF13462.1 gi|110667581|ref|YP_657392.1| - 5.6e-16 58.9 0.0 6.8e-16 58.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|110667581|ref|YP_657392.1| - 7.5e-06 26.1 0.0 2.1e-05 24.7 0.0 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.15 gi|110667581|ref|YP_657392.1| - 0.018 14.6 0.1 0.094 12.2 0.0 1.9 2 0 0 2 2 2 0 DSBA-like thioredoxin domain Thioredoxin PF00085.15 gi|110667581|ref|YP_657392.1| - 0.13 11.9 0.0 8.5 6.1 0.0 2.3 2 0 0 2 2 2 0 Thioredoxin Met_10 PF02475.11 gi|110667583|ref|YP_657394.1| - 2.7e-55 187.0 0.0 3.6e-55 186.6 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|110667583|ref|YP_657394.1| - 6.4e-09 35.8 0.1 1.4e-08 34.7 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|110667583|ref|YP_657394.1| - 1.5e-07 31.9 0.1 3.8e-07 30.6 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|110667583|ref|YP_657394.1| - 9.7e-07 28.3 0.0 1.5e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.5 gi|110667583|ref|YP_657394.1| - 1.3e-06 28.0 0.0 2e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_31 PF13847.1 gi|110667583|ref|YP_657394.1| - 5.5e-06 26.0 0.0 1e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|110667583|ref|YP_657394.1| - 0.00031 20.2 0.0 0.00061 19.2 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 UPF0020 PF01170.13 gi|110667583|ref|YP_657394.1| - 0.00056 19.5 0.0 0.00099 18.7 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 tRNA_U5-meth_tr PF05958.6 gi|110667583|ref|YP_657394.1| - 0.0006 18.6 0.0 0.00096 17.9 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase RrnaAD PF00398.15 gi|110667583|ref|YP_657394.1| - 0.0019 17.3 0.0 0.0028 16.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.8 gi|110667583|ref|YP_657394.1| - 0.0052 15.9 0.1 0.0094 15.1 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) DNA_methylase PF00145.12 gi|110667583|ref|YP_657394.1| - 0.0076 15.4 0.0 0.013 14.6 0.0 1.3 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase Methyltransf_23 PF13489.1 gi|110667583|ref|YP_657394.1| - 0.019 14.6 0.0 0.035 13.8 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|110667583|ref|YP_657394.1| - 0.02 15.3 0.0 0.045 14.2 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain TRM PF02005.11 gi|110667583|ref|YP_657394.1| - 0.17 10.7 1.5 1.3 7.8 0.3 2.4 1 1 2 3 3 3 0 N2,N2-dimethylguanosine tRNA methyltransferase TFIIB PF00382.14 gi|110667584|ref|YP_657395.1| - 3.5e-37 126.0 0.1 8e-19 67.2 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|110667584|ref|YP_657395.1| - 6e-19 67.0 3.6 1.4e-18 65.9 2.5 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.14 gi|110667584|ref|YP_657395.1| - 0.0021 17.9 0.0 0.026 14.4 0.0 2.2 1 1 0 2 2 2 1 Cyclin, C-terminal domain Cyclin_N PF00134.18 gi|110667584|ref|YP_657395.1| - 0.004 16.7 0.0 0.06 12.9 0.0 2.2 2 0 0 2 2 2 1 Cyclin, N-terminal domain HTH_Tnp_ISL3 PF13542.1 gi|110667584|ref|YP_657395.1| - 0.0056 15.8 0.3 2 7.6 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.7 gi|110667584|ref|YP_657395.1| - 0.01 15.2 0.0 0.036 13.5 0.0 2.0 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|110667584|ref|YP_657395.1| - 0.012 14.9 0.1 0.18 11.1 0.0 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 RRN7 PF11781.3 gi|110667584|ref|YP_657395.1| - 0.025 14.0 0.6 0.05 13.1 0.4 1.5 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 Zn_Tnp_IS1 PF03811.8 gi|110667584|ref|YP_657395.1| - 0.03 13.8 0.9 0.055 12.9 0.1 1.9 2 0 0 2 2 1 0 InsA N-terminal domain zf-ribbon_3 PF13248.1 gi|110667584|ref|YP_657395.1| - 0.039 13.1 0.3 0.066 12.4 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|110667584|ref|YP_657395.1| - 0.06 13.6 1.1 0.06 13.6 0.8 2.2 3 0 0 3 3 1 0 Restriction alleviation protein Lar Ribosomal_S27e PF01667.12 gi|110667584|ref|YP_657395.1| - 0.14 11.7 0.5 0.24 10.9 0.4 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 OrfB_Zn_ribbon PF07282.6 gi|110667584|ref|YP_657395.1| - 1 9.0 3.1 2.5 7.8 2.1 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain ABC_tran PF00005.22 gi|110667585|ref|YP_657396.1| - 9.1e-30 103.7 0.9 3e-29 102.0 0.0 2.1 2 1 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|110667585|ref|YP_657396.1| - 1.1e-09 38.6 0.2 2.2e-06 27.8 0.1 2.3 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|110667585|ref|YP_657396.1| - 4.2e-06 26.1 0.0 1.5e-05 24.3 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|110667585|ref|YP_657396.1| - 1.8e-05 25.1 0.0 3.3e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|110667585|ref|YP_657396.1| - 0.0035 16.4 0.2 1 8.3 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA PF00004.24 gi|110667585|ref|YP_657396.1| - 0.0067 16.6 0.4 0.084 13.0 0.1 3.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) cobW PF02492.14 gi|110667585|ref|YP_657396.1| - 0.01 15.3 1.6 0.089 12.2 0.2 2.4 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.1 gi|110667585|ref|YP_657396.1| - 0.011 15.2 0.0 0.035 13.6 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|110667585|ref|YP_657396.1| - 0.011 15.2 0.6 0.011 15.2 0.4 2.2 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|110667585|ref|YP_657396.1| - 0.017 15.2 0.7 0.29 11.2 0.5 2.5 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|110667585|ref|YP_657396.1| - 0.021 13.9 0.2 0.047 12.7 0.1 1.5 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.7 gi|110667585|ref|YP_657396.1| - 0.022 14.4 0.6 0.53 9.9 0.1 2.3 2 0 0 2 2 2 0 NACHT domain DUF258 PF03193.11 gi|110667585|ref|YP_657396.1| - 0.025 13.7 0.2 0.051 12.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|110667585|ref|YP_657396.1| - 0.032 14.2 2.5 0.054 13.4 0.9 2.1 2 1 0 2 2 2 0 AAA ATPase domain AAA_17 PF13207.1 gi|110667585|ref|YP_657396.1| - 0.04 14.7 0.1 0.1 13.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|110667585|ref|YP_657396.1| - 0.046 12.5 0.3 0.2 10.4 0.1 1.9 2 0 0 2 2 2 0 NB-ARC domain SbcCD_C PF13558.1 gi|110667585|ref|YP_657396.1| - 0.07 13.0 0.0 0.39 10.6 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|110667585|ref|YP_657396.1| - 0.25 11.1 1.5 0.65 9.8 0.4 2.4 2 1 0 2 2 2 0 AAA domain PIG-P PF08510.7 gi|110667585|ref|YP_657396.1| - 0.43 10.2 1.6 9.1 5.9 0.0 2.5 2 0 0 2 2 2 0 PIG-P DUF1542 PF07564.6 gi|110667585|ref|YP_657396.1| - 6 6.9 14.9 1.8 8.6 4.1 3.5 3 0 0 3 3 3 0 Domain of Unknown Function (DUF1542) FecCD PF01032.13 gi|110667586|ref|YP_657397.1| - 3.4e-88 295.4 39.9 4.1e-88 295.2 27.7 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|110667586|ref|YP_657397.1| - 2.8e-06 26.8 17.4 2.8e-06 26.8 12.0 2.2 1 1 1 2 2 2 1 ABC 3 transport family Nepo_coat_N PF03689.10 gi|110667586|ref|YP_657397.1| - 0.12 12.1 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 Nepovirus coat protein, N-terminal domain Peripla_BP_2 PF01497.13 gi|110667587|ref|YP_657398.1| - 7.2e-27 94.0 0.1 1.1e-26 93.5 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Pap_E4 PF02711.9 gi|110667587|ref|YP_657398.1| - 2.4 9.0 10.4 2.3 9.0 1.7 2.5 2 0 0 2 2 2 0 E4 protein Thioredoxin PF00085.15 gi|110667588|ref|YP_657399.1| - 1.5e-29 101.7 0.0 2.2e-29 101.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|110667588|ref|YP_657399.1| - 2.5e-10 40.5 0.3 2.4e-09 37.3 0.0 2.3 2 1 0 2 2 2 1 Thioredoxin-like domain Thioredoxin_7 PF13899.1 gi|110667588|ref|YP_657399.1| - 1.6e-07 31.2 0.1 4.2e-07 29.9 0.1 1.7 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_8 PF13905.1 gi|110667588|ref|YP_657399.1| - 3.9e-07 30.1 0.0 0.00056 19.9 0.0 2.6 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_9 PF14595.1 gi|110667588|ref|YP_657399.1| - 5.2e-06 26.0 0.0 8.2e-06 25.4 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin TraF PF13728.1 gi|110667588|ref|YP_657399.1| - 4e-05 23.2 0.1 6.2e-05 22.5 0.0 1.4 1 1 0 1 1 1 1 F plasmid transfer operon protein DSBA PF01323.15 gi|110667588|ref|YP_657399.1| - 0.00012 21.7 0.2 0.00031 20.3 0.0 1.7 1 1 1 2 2 2 1 DSBA-like thioredoxin domain DUF836 PF05768.9 gi|110667588|ref|YP_657399.1| - 0.00037 20.6 0.0 0.00072 19.7 0.0 1.5 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) AhpC-TSA PF00578.16 gi|110667588|ref|YP_657399.1| - 0.00047 19.8 0.0 0.00069 19.2 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family HyaE PF07449.6 gi|110667588|ref|YP_657399.1| - 0.0015 18.4 0.0 0.0027 17.5 0.0 1.5 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_5 PF13743.1 gi|110667588|ref|YP_657399.1| - 0.0099 15.4 0.0 0.029 13.9 0.0 1.8 1 1 1 2 2 2 1 Thioredoxin Redoxin PF08534.5 gi|110667588|ref|YP_657399.1| - 0.023 14.2 0.3 0.26 10.8 0.1 2.0 1 1 1 2 2 2 0 Redoxin Glutaredoxin PF00462.19 gi|110667588|ref|YP_657399.1| - 0.12 12.3 0.4 0.36 10.8 0.0 2.0 2 1 0 2 2 2 0 Glutaredoxin DEAD PF00270.24 gi|110667590|ref|YP_657401.1| - 6.8e-26 90.7 0.6 1.1e-24 86.8 0.0 2.5 2 1 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|110667590|ref|YP_657401.1| - 1.1e-07 31.6 0.2 3.3e-07 30.0 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|110667590|ref|YP_657401.1| - 1.4e-05 24.9 0.0 2.5e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DJ-1_PfpI PF01965.19 gi|110667590|ref|YP_657401.1| - 0.026 13.9 0.2 0.17 11.3 0.1 2.4 2 0 0 2 2 2 0 DJ-1/PfpI family DUF433 PF04255.9 gi|110667590|ref|YP_657401.1| - 0.057 12.8 0.0 0.13 11.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF433) Aminotran_1_2 PF00155.16 gi|110667591|ref|YP_657402.1| - 2.9e-64 217.3 0.0 3.3e-64 217.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|110667591|ref|YP_657402.1| - 1.9e-07 30.5 0.0 1.4e-06 27.6 0.0 1.9 2 0 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|110667591|ref|YP_657402.1| - 6.2e-06 24.7 0.0 2e-05 23.0 0.0 1.7 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|110667591|ref|YP_657402.1| - 0.00097 17.9 0.0 0.0016 17.2 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|110667591|ref|YP_657402.1| - 0.0057 15.7 0.0 0.0092 15.0 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family DMRL_synthase PF00885.14 gi|110667592|ref|YP_657403.1| - 9.8e-34 116.0 1.6 1.1e-33 115.8 1.1 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase PMT_2 PF13231.1 gi|110667593|ref|YP_657404.1| - 4.3e-12 46.2 6.0 4.3e-12 46.2 4.1 3.3 4 1 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase TMEM190 PF15431.1 gi|110667593|ref|YP_657404.1| - 0.13 12.2 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 Transmembrane protein 190 ATP-grasp PF02222.17 gi|110667594|ref|YP_657405.1| - 2e-48 163.9 0.0 2.9e-48 163.4 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|110667594|ref|YP_657405.1| - 5.5e-13 49.0 0.0 1.2e-12 47.9 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|110667594|ref|YP_657405.1| - 5.4e-07 29.6 0.0 8e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|110667594|ref|YP_657405.1| - 3.6e-06 25.9 0.0 0.00017 20.4 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon 2-Hacid_dh_C PF02826.14 gi|110667594|ref|YP_657405.1| - 5.7e-05 22.3 0.0 0.0001 21.5 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Dala_Dala_lig_C PF07478.8 gi|110667594|ref|YP_657405.1| - 0.00015 21.2 0.0 0.00027 20.3 0.0 1.4 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus XdhC_C PF13478.1 gi|110667594|ref|YP_657405.1| - 0.0021 18.3 0.1 0.0052 17.0 0.0 1.7 2 0 0 2 2 2 1 XdhC Rossmann domain 3HCDH_N PF02737.13 gi|110667594|ref|YP_657405.1| - 0.0033 17.1 0.0 0.0085 15.7 0.0 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|110667594|ref|YP_657405.1| - 0.045 14.1 0.0 0.12 12.8 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.10 gi|110667594|ref|YP_657405.1| - 0.091 12.5 0.0 0.4 10.5 0.0 1.9 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase AIRC PF00731.15 gi|110667595|ref|YP_657406.1| - 5.6e-52 175.0 0.4 6.9e-52 174.7 0.3 1.1 1 0 0 1 1 1 1 AIR carboxylase Peripla_BP_1 PF00532.16 gi|110667595|ref|YP_657406.1| - 0.043 13.0 0.0 0.057 12.6 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family Oxidored_q4 PF00507.14 gi|110667596|ref|YP_657407.1| - 2.7e-27 94.5 0.1 3.4e-27 94.2 0.0 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DuoxA PF10204.4 gi|110667596|ref|YP_657407.1| - 0.066 12.2 2.4 0.12 11.4 1.7 1.3 1 0 0 1 1 1 0 Dual oxidase maturation factor DUF3188 PF11384.3 gi|110667596|ref|YP_657407.1| - 0.74 9.4 4.5 18 5.0 1.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) Oxidored_q6 PF01058.17 gi|110667597|ref|YP_657408.1| - 5.2e-22 77.8 0.2 7.8e-22 77.2 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Nuc_N PF14448.1 gi|110667597|ref|YP_657408.1| - 0.13 11.8 0.2 25 4.5 0.0 3.1 3 0 0 3 3 3 0 Nuclease N terminal Complex1_49kDa PF00346.14 gi|110667598|ref|YP_657409.1| - 6.4e-63 212.2 0.0 1.1e-40 139.3 0.0 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|110667598|ref|YP_657409.1| - 5e-30 103.7 0.1 9.3e-30 102.9 0.0 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Autoind_bind PF03472.10 gi|110667598|ref|YP_657409.1| - 0.0066 15.7 1.2 0.02 14.1 0.1 2.1 1 1 1 2 2 2 1 Autoinducer binding domain NADHdh PF00146.16 gi|110667599|ref|YP_657410.1| - 2e-79 266.8 9.7 2.5e-79 266.5 6.7 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.22 gi|110667600|ref|YP_657411.1| - 1.5e-12 46.5 9.5 1.2e-06 27.8 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|110667600|ref|YP_657411.1| - 2.3e-11 43.9 10.4 3.6e-11 43.2 7.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|110667600|ref|YP_657411.1| - 1.5e-10 40.8 9.0 2e-10 40.3 6.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|110667600|ref|YP_657411.1| - 7.3e-10 38.9 8.4 1.5e-09 37.9 5.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|110667600|ref|YP_657411.1| - 1.1e-09 37.9 10.8 1.6e-09 37.3 7.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|110667600|ref|YP_657411.1| - 1.9e-09 38.0 4.2 3.3e-05 24.5 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|110667600|ref|YP_657411.1| - 5.6e-08 32.3 12.9 0.00042 20.0 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|110667600|ref|YP_657411.1| - 7.2e-08 32.3 9.7 2.1e-07 30.8 7.1 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|110667600|ref|YP_657411.1| - 9e-08 31.6 9.8 0.00019 21.1 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|110667600|ref|YP_657411.1| - 1e-06 28.5 8.9 0.0038 17.4 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|110667600|ref|YP_657411.1| - 1.2e-05 25.5 11.9 0.003 17.8 0.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|110667600|ref|YP_657411.1| - 8.6e-05 23.0 4.5 0.097 13.2 0.5 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|110667600|ref|YP_657411.1| - 0.00011 22.5 12.2 0.022 15.1 1.3 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|110667600|ref|YP_657411.1| - 0.00018 21.8 14.7 0.0077 16.7 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|110667600|ref|YP_657411.1| - 0.11 12.8 12.7 0.49 10.8 0.8 2.6 3 0 0 3 3 2 0 4Fe-4S single cluster domain Ecl1 PF12855.2 gi|110667600|ref|YP_657411.1| - 0.95 8.8 4.7 4.8 6.5 0.2 2.3 2 0 0 2 2 2 0 Life-span regulatory factor Oxidored_q3 PF00499.15 gi|110667601|ref|YP_657412.1| - 9.9e-14 51.3 7.1 9.9e-14 51.3 4.9 1.3 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.1 gi|110667601|ref|YP_657412.1| - 0.001 18.9 10.9 0.001 18.9 7.5 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) YlaC PF10777.4 gi|110667601|ref|YP_657412.1| - 3.8 7.0 6.0 2.8 7.4 3.5 1.3 1 1 0 1 1 1 0 Inner membrane protein YlaC Oxidored_q2 PF00420.19 gi|110667603|ref|YP_657414.1| - 3.9e-21 74.4 7.1 4.2e-21 74.3 4.9 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Oxidored_q1 PF00361.15 gi|110667604|ref|YP_657415.1| - 5.5e-74 248.8 11.9 5.5e-74 248.8 8.2 2.0 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|110667604|ref|YP_657415.1| - 1.4e-12 46.9 0.5 3.7e-12 45.6 0.3 1.7 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|110667605|ref|YP_657416.1| - 7.6e-65 218.8 22.3 7.6e-65 218.8 15.5 2.2 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q5_N PF01059.12 gi|110667605|ref|YP_657416.1| - 0.00091 19.0 0.5 0.00091 19.0 0.3 3.3 2 1 1 3 3 3 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Tachykinin PF02202.11 gi|110667605|ref|YP_657416.1| - 0.31 10.8 2.3 5.5 6.9 0.2 3.1 2 0 0 2 2 2 0 Tachykinin family Oxidored_q1 PF00361.15 gi|110667606|ref|YP_657417.1| - 3.8e-59 200.1 12.0 3.8e-59 200.1 8.3 2.3 2 1 1 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|110667606|ref|YP_657417.1| - 0.0076 15.7 3.7 0.0076 15.7 2.6 2.0 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF624 PF04854.9 gi|110667606|ref|YP_657417.1| - 0.05 13.4 0.6 0.05 13.4 0.4 3.6 3 1 0 3 3 3 0 Protein of unknown function, DUF624 DHH PF01368.15 gi|110667607|ref|YP_657418.1| - 1.2e-14 54.1 0.3 2.4e-14 53.1 0.2 1.5 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|110667607|ref|YP_657418.1| - 4.3e-11 42.3 0.1 9.7e-11 41.2 0.1 1.6 1 0 0 1 1 1 1 DHHA1 domain TrkA_N PF02254.13 gi|110667607|ref|YP_657418.1| - 0.0066 16.4 0.0 0.029 14.3 0.0 2.1 1 0 0 1 1 1 1 TrkA-N domain Chlorovi_GP_rpt PF06598.6 gi|110667607|ref|YP_657418.1| - 0.55 10.1 3.5 2.6 7.9 0.1 2.8 3 0 0 3 3 3 0 Chlorovirus glycoprotein repeat CBS PF00571.23 gi|110667608|ref|YP_657419.1| - 3.9e-22 77.7 3.8 1e-10 41.1 0.7 2.7 2 0 0 2 2 2 2 CBS domain ParBc PF02195.13 gi|110667608|ref|YP_657419.1| - 1.8e-06 27.9 0.1 6.3e-06 26.2 0.1 2.0 2 1 0 2 2 2 1 ParB-like nuclease domain DUF1015 PF06245.6 gi|110667608|ref|YP_657419.1| - 0.025 13.0 0.0 0.034 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1015) ParBc_2 PF08857.6 gi|110667608|ref|YP_657419.1| - 0.035 13.9 0.1 0.38 10.5 0.1 2.2 1 1 0 1 1 1 0 Putative ParB-like nuclease Pyr_redox_2 PF07992.9 gi|110667610|ref|YP_657421.1| - 1.5e-26 93.5 0.1 2.2e-26 93.0 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|110667610|ref|YP_657421.1| - 5.1e-14 52.4 0.7 8.2e-12 45.3 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|110667610|ref|YP_657421.1| - 2e-12 47.6 0.3 3.6e-10 40.2 0.0 2.7 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|110667610|ref|YP_657421.1| - 2e-07 30.2 0.3 0.011 14.6 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|110667610|ref|YP_657421.1| - 0.00015 20.7 5.5 0.0019 17.1 0.1 3.0 2 1 0 3 3 3 1 FAD binding domain HI0933_like PF03486.9 gi|110667610|ref|YP_657421.1| - 0.00034 19.2 1.5 0.59 8.5 0.0 3.3 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|110667610|ref|YP_657421.1| - 0.00041 20.3 0.0 0.0024 17.8 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.1 gi|110667610|ref|YP_657421.1| - 0.0035 17.5 0.0 0.017 15.3 0.0 2.0 2 0 0 2 2 2 1 Putative NAD(P)-binding Trp_halogenase PF04820.9 gi|110667610|ref|YP_657421.1| - 0.039 12.5 0.4 14 4.1 0.0 3.0 3 0 0 3 3 3 0 Tryptophan halogenase GIDA PF01134.17 gi|110667610|ref|YP_657421.1| - 0.091 11.6 1.1 8.8 5.0 0.1 3.4 4 0 0 4 4 4 0 Glucose inhibited division protein A Amino_oxidase PF01593.19 gi|110667610|ref|YP_657421.1| - 0.1 11.6 0.1 1.2 8.1 0.0 2.1 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase DUF357 PF04010.8 gi|110667611|ref|YP_657422.1| - 2.8e-29 100.6 0.1 3.2e-29 100.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF357) Resolvase PF00239.16 gi|110667611|ref|YP_657422.1| - 0.05 13.4 0.0 0.059 13.2 0.0 1.1 1 0 0 1 1 1 0 Resolvase, N terminal domain tRNA-synt_1e PF01406.14 gi|110667612|ref|YP_657423.1| - 1.2e-100 336.5 0.5 7.2e-100 333.9 0.3 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|110667612|ref|YP_657423.1| - 1.1e-09 37.4 0.1 0.00013 20.7 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.6 gi|110667612|ref|YP_657423.1| - 1.1e-09 38.3 0.1 4.5e-09 36.4 0.0 2.1 2 0 0 2 2 2 1 DALR domain tRNA-synt_1f PF01921.13 gi|110667612|ref|YP_657423.1| - 5.7e-09 35.1 0.3 2.3e-05 23.2 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.17 gi|110667612|ref|YP_657423.1| - 3.1e-05 22.1 0.1 0.00096 17.2 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1d PF00750.14 gi|110667612|ref|YP_657423.1| - 0.0025 16.6 0.4 0.27 10.0 0.1 2.9 3 0 0 3 3 3 1 tRNA synthetases class I (R) CbiX PF01903.12 gi|110667614|ref|YP_657425.1| - 3.7e-40 136.2 0.3 3.7e-21 75.2 0.0 2.5 3 0 0 3 3 3 2 CbiX CbiK PF06180.6 gi|110667614|ref|YP_657425.1| - 2.9e-07 29.8 0.1 0.0069 15.5 0.1 2.1 1 1 0 2 2 2 2 Cobalt chelatase (CbiK) Fumerase_C PF05683.7 gi|110667614|ref|YP_657425.1| - 0.082 12.0 0.0 6 5.9 0.0 2.2 2 0 0 2 2 2 0 Fumarase C-terminus Trm112p PF03966.11 gi|110667616|ref|YP_657427.1| - 2e-05 24.8 0.2 4.7e-05 23.6 0.1 1.6 1 1 0 1 1 1 1 Trm112p-like protein Adenylsucc_synt PF00709.16 gi|110667617|ref|YP_657428.1| - 3.1e-144 480.7 0.0 3.6e-144 480.5 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase AICARFT_IMPCHas PF01808.13 gi|110667618|ref|YP_657429.1| - 4.3e-83 279.0 0.1 5.8e-83 278.5 0.1 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme Formyl_trans_N PF00551.14 gi|110667618|ref|YP_657429.1| - 8.8e-37 126.4 0.0 1.7e-36 125.4 0.0 1.5 1 0 0 1 1 1 1 Formyl transferase Lyase_1 PF00206.15 gi|110667619|ref|YP_657430.1| - 4.3e-47 160.8 0.0 6.5e-47 160.2 0.0 1.3 1 0 0 1 1 1 1 Lyase ASL_C PF08328.6 gi|110667619|ref|YP_657430.1| - 4.4e-39 132.9 0.0 7.2e-39 132.1 0.0 1.4 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal DUF3029 PF11230.3 gi|110667619|ref|YP_657430.1| - 0.055 11.6 0.0 0.083 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3029) ADH_N PF08240.7 gi|110667620|ref|YP_657431.1| - 1.2e-10 41.0 0.0 1.8e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|110667620|ref|YP_657431.1| - 0.0004 19.9 0.0 0.0008 18.9 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Pribosyltran PF00156.22 gi|110667621|ref|YP_657432.1| - 6.5e-21 74.3 0.1 1.2e-20 73.4 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|110667621|ref|YP_657432.1| - 0.0012 18.1 0.1 0.0018 17.4 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase HTH_23 PF13384.1 gi|110667621|ref|YP_657432.1| - 0.0016 18.0 0.0 0.0033 17.0 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain PRTase_2 PF15609.1 gi|110667621|ref|YP_657432.1| - 0.0031 16.8 0.2 0.17 11.1 0.0 2.2 2 0 0 2 2 2 1 Phosphoribosyl transferase HTH_7 PF02796.10 gi|110667621|ref|YP_657432.1| - 0.0038 17.0 0.0 0.007 16.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_11 PF08279.7 gi|110667621|ref|YP_657432.1| - 0.014 15.0 0.1 0.057 13.0 0.0 2.0 2 0 0 2 2 2 0 HTH domain Sigma70_r4 PF04545.11 gi|110667621|ref|YP_657432.1| - 0.027 13.7 0.0 0.048 12.9 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|110667621|ref|YP_657432.1| - 0.037 13.4 0.1 0.096 12.0 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|110667621|ref|YP_657432.1| - 0.042 13.8 0.0 0.16 11.9 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain CENP-B_N PF04218.8 gi|110667621|ref|YP_657432.1| - 0.096 12.1 0.0 0.21 11.0 0.0 1.5 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HTH_38 PF13936.1 gi|110667621|ref|YP_657432.1| - 0.11 12.0 0.0 0.28 10.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Glutaredoxin PF00462.19 gi|110667622|ref|YP_657433.1| - 6.3e-14 51.7 0.0 1.1e-13 50.9 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.1 gi|110667622|ref|YP_657433.1| - 0.06 13.5 0.0 0.087 13.0 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain DUF4147 PF13660.1 gi|110667624|ref|YP_657435.1| - 4.5e-68 228.9 0.7 4.5e-68 228.9 0.5 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|110667624|ref|YP_657435.1| - 1.8e-26 92.3 3.3 3.7e-26 91.3 2.3 1.6 1 0 0 1 1 1 1 MOFRL family PAPS_reduct PF01507.14 gi|110667625|ref|YP_657436.1| - 1.8e-18 66.9 0.0 1.1e-14 54.6 0.0 3.1 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family ATP_bind_4 PF01902.12 gi|110667625|ref|YP_657436.1| - 0.0078 15.5 0.0 0.031 13.6 0.0 1.9 2 0 0 2 2 2 1 ATP-binding region ATP_bind_4 PF01902.12 gi|110667626|ref|YP_657437.1| - 3.7e-53 180.1 0.0 1.1e-52 178.6 0.0 1.6 1 1 0 1 1 1 1 ATP-binding region Asn_synthase PF00733.16 gi|110667626|ref|YP_657437.1| - 0.00074 19.0 0.1 0.0014 18.2 0.0 1.4 2 0 0 2 2 2 1 Asparagine synthase QueC PF06508.8 gi|110667626|ref|YP_657437.1| - 0.021 14.1 0.0 0.028 13.6 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC NTP_transferase PF00483.18 gi|110667627|ref|YP_657438.1| - 5e-36 124.2 0.0 6e-36 124.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|110667627|ref|YP_657438.1| - 1.6e-10 41.3 0.0 2.1e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|110667627|ref|YP_657438.1| - 0.011 15.3 0.0 0.034 13.6 0.0 1.8 2 0 0 2 2 2 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep PF00132.19 gi|110667627|ref|YP_657438.1| - 0.17 11.4 0.6 2.6 7.7 0.0 2.9 4 0 0 4 4 4 0 Bacterial transferase hexapeptide (six repeats) zf-RING_3 PF14369.1 gi|110667628|ref|YP_657439.1| - 0.59 10.1 3.0 14 5.7 0.3 2.5 2 0 0 2 2 2 0 zinc-finger zf-trcl PF13451.1 gi|110667628|ref|YP_657439.1| - 4.5 6.9 7.5 0.61 9.7 0.8 2.2 1 1 1 2 2 2 0 Probable zinc-binding domain Zn-ribbon_8 PF09723.5 gi|110667628|ref|YP_657439.1| - 5.5 7.0 7.5 4.3 7.3 3.5 2.1 2 1 0 2 2 2 0 Zinc ribbon domain Pribosyltran PF00156.22 gi|110667629|ref|YP_657440.1| - 4.5e-21 74.8 1.8 7.6e-21 74.1 1.3 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|110667629|ref|YP_657440.1| - 0.0025 17.0 0.1 0.0043 16.2 0.0 1.3 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_3 PF15610.1 gi|110667629|ref|YP_657440.1| - 0.058 12.2 0.1 0.073 11.9 0.0 1.2 1 0 0 1 1 1 0 PRTase ComF-like PRTase_2 PF15609.1 gi|110667629|ref|YP_657440.1| - 0.09 12.0 0.2 0.1 11.8 0.1 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase MoCo_carrier PF12694.2 gi|110667629|ref|YP_657440.1| - 0.2 11.0 0.8 1.5 8.2 0.1 2.1 1 1 0 2 2 2 0 Putative molybdenum carrier EIIA-man PF03610.11 gi|110667629|ref|YP_657440.1| - 0.32 11.0 1.8 3 7.9 0.3 2.3 1 1 1 2 2 2 0 PTS system fructose IIA component DUF1628 PF07790.6 gi|110667630|ref|YP_657441.1| - 2.6e-21 76.1 1.1 4e-21 75.5 0.7 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1628) DUF4307 PF14155.1 gi|110667630|ref|YP_657441.1| - 0.028 14.1 0.1 0.054 13.2 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) MNHE PF01899.11 gi|110667631|ref|YP_657442.1| - 1.4e-34 118.9 1.2 2e-34 118.4 0.8 1.2 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit LptE PF04390.7 gi|110667631|ref|YP_657442.1| - 0.079 12.6 1.0 0.32 10.7 0.0 2.2 2 0 0 2 2 2 0 Lipopolysaccharide-assembly MnhB PF04039.8 gi|110667631|ref|YP_657442.1| - 0.52 10.3 5.4 0.093 12.7 1.2 1.7 2 0 0 2 2 2 0 Domain related to MnhB subunit of Na+/H+ antiporter DUF360 PF04020.8 gi|110667631|ref|YP_657442.1| - 0.99 9.7 5.1 0.9 9.9 2.2 1.4 1 1 0 1 1 1 0 Membrane protein of unknown function MrpF_PhaF PF04066.8 gi|110667632|ref|YP_657443.1| - 3.7e-17 62.3 4.4 3.7e-17 62.3 3.1 2.2 3 0 0 3 3 3 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) Caps_synth_CapC PF14102.1 gi|110667632|ref|YP_657443.1| - 0.15 12.1 6.7 0.096 12.8 0.6 2.1 1 1 1 2 2 2 0 Capsule biosynthesis CapC DUF1109 PF06532.6 gi|110667632|ref|YP_657443.1| - 0.16 11.3 5.0 0.19 11.1 3.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1109) PhaG_MnhG_YufB PF03334.9 gi|110667633|ref|YP_657444.1| - 2.3e-28 98.0 9.4 2.8e-28 97.7 6.5 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit YtpI PF14007.1 gi|110667633|ref|YP_657444.1| - 0.0051 16.7 1.8 0.0068 16.2 1.2 1.2 1 0 0 1 1 1 1 YtpI-like protein PRA1 PF03208.14 gi|110667633|ref|YP_657444.1| - 0.023 14.0 3.7 0.028 13.7 2.6 1.1 1 0 0 1 1 1 0 PRA1 family protein DUF4040 PF13244.1 gi|110667634|ref|YP_657445.1| - 1.3e-19 69.9 14.1 1.3e-19 69.9 9.8 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF4040) YqhR PF11085.3 gi|110667634|ref|YP_657445.1| - 0.69 9.4 3.8 1.1 8.7 2.6 1.3 1 0 0 1 1 1 0 Conserved membrane protein YqhR DUF2108 PF09881.4 gi|110667634|ref|YP_657445.1| - 0.76 9.6 12.5 0.19 11.5 5.8 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2108) MnhB PF04039.8 gi|110667635|ref|YP_657446.1| - 2.7e-19 69.4 18.1 3.5e-19 69.0 12.5 1.1 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Oxidored_q2 PF00420.19 gi|110667636|ref|YP_657447.1| - 1e-22 79.5 1.8 1.2e-22 79.2 1.2 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.4 gi|110667636|ref|YP_657447.1| - 0.0015 18.2 2.8 0.0015 18.2 1.9 1.8 2 0 0 2 2 2 1 Predicted membrane protein (DUF2108) Acyl_transf_3 PF01757.17 gi|110667636|ref|YP_657447.1| - 0.055 12.2 1.9 0.077 11.8 1.1 1.4 1 1 0 1 1 1 0 Acyltransferase family Oxidored_q1 PF00361.15 gi|110667637|ref|YP_657448.1| - 5.8e-54 183.1 13.8 5.8e-54 183.1 9.5 1.9 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|110667637|ref|YP_657448.1| - 1.5e-05 24.2 9.8 1.5e-05 24.2 6.8 2.8 2 1 1 3 3 3 1 NADH dehydrogenase I, subunit N related protein Oxidored_q1_N PF00662.15 gi|110667637|ref|YP_657448.1| - 0.048 13.2 0.4 0.15 11.6 0.0 2.1 2 0 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|110667638|ref|YP_657449.1| - 2.8e-58 197.3 7.0 2.8e-58 197.3 4.8 1.8 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|110667638|ref|YP_657449.1| - 0.0093 15.5 0.1 0.027 14.0 0.1 1.8 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|110667639|ref|YP_657450.1| - 9.3e-43 146.4 9.0 9.3e-43 146.4 6.3 2.1 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains TMEM171 PF15471.1 gi|110667639|ref|YP_657450.1| - 0.1 11.3 0.4 0.24 10.1 0.2 1.6 1 0 0 1 1 1 0 Transmembrane protein family 171 DFP PF04127.10 gi|110667640|ref|YP_657451.1| - 7.6e-44 149.5 1.6 3.4e-43 147.4 0.1 2.2 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|110667640|ref|YP_657451.1| - 1e-26 93.1 0.6 2.9e-26 91.6 0.1 2.0 2 0 0 2 2 2 1 Flavoprotein Polyketide_cyc2 PF10604.4 gi|110667641|ref|YP_657452.1| - 1.9e-08 34.5 1.7 2.5e-08 34.2 1.2 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|110667641|ref|YP_657452.1| - 1.2e-05 25.3 0.6 2e-05 24.6 0.2 1.5 2 0 0 2 2 2 1 Polyketide cyclase / dehydrase and lipid transport TrkA_N PF02254.13 gi|110667642|ref|YP_657453.1| - 5.3e-49 165.0 10.0 4.7e-26 91.0 0.6 3.1 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|110667642|ref|YP_657453.1| - 5.7e-28 96.3 10.1 4e-14 51.9 2.7 3.2 3 1 1 4 4 4 2 TrkA-C domain NAD_binding_7 PF13241.1 gi|110667642|ref|YP_657453.1| - 1.3e-09 38.1 2.2 2.6e-05 24.4 0.3 2.8 2 0 0 2 2 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|110667642|ref|YP_657453.1| - 6.9e-09 35.9 0.9 0.0025 17.9 0.1 2.4 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.14 gi|110667642|ref|YP_657453.1| - 1.2e-06 27.8 0.6 0.005 15.9 0.0 2.5 3 0 0 3 3 3 2 FAD binding domain Saccharop_dh PF03435.13 gi|110667642|ref|YP_657453.1| - 1.4e-06 27.5 2.4 0.0095 14.9 0.2 2.3 2 0 0 2 2 2 2 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|110667642|ref|YP_657453.1| - 1.5e-06 28.5 1.8 0.03 14.7 0.1 3.7 2 1 1 3 3 3 2 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|110667642|ref|YP_657453.1| - 3.6e-06 26.4 0.7 1.7e-05 24.3 0.4 2.3 2 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|110667642|ref|YP_657453.1| - 7.7e-05 22.4 0.7 0.011 15.3 0.2 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.9 gi|110667642|ref|YP_657453.1| - 0.00039 20.3 0.3 0.37 10.6 0.0 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.14 gi|110667642|ref|YP_657453.1| - 0.00081 18.5 0.0 0.98 8.5 0.0 2.5 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|110667642|ref|YP_657453.1| - 0.00083 18.8 0.1 0.0042 16.5 0.0 2.1 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|110667642|ref|YP_657453.1| - 0.00085 19.0 0.0 0.039 13.6 0.0 2.6 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox PF00070.22 gi|110667642|ref|YP_657453.1| - 0.0011 19.3 0.8 0.37 11.2 0.0 3.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HEM4 PF02602.10 gi|110667642|ref|YP_657453.1| - 0.0033 16.7 0.1 0.015 14.5 0.0 2.1 1 1 1 2 2 2 1 Uroporphyrinogen-III synthase HemD NAD_binding_2 PF03446.10 gi|110667642|ref|YP_657453.1| - 0.0033 17.2 0.2 3 7.6 0.0 2.6 2 0 0 2 2 2 2 NAD binding domain of 6-phosphogluconate dehydrogenase XdhC_C PF13478.1 gi|110667642|ref|YP_657453.1| - 0.0066 16.7 0.6 0.77 10.0 0.0 2.9 3 1 0 3 3 2 1 XdhC Rossmann domain DAO PF01266.19 gi|110667642|ref|YP_657453.1| - 0.012 14.5 4.0 0.058 12.2 0.8 3.0 2 1 0 2 2 2 0 FAD dependent oxidoreductase ThiF PF00899.16 gi|110667642|ref|YP_657453.1| - 0.035 13.9 0.2 0.035 13.9 0.1 4.1 3 2 2 5 5 4 0 ThiF family Oxidored_nitro PF00148.14 gi|110667642|ref|YP_657453.1| - 0.048 12.2 0.1 0.13 10.8 0.0 1.9 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase DUF2325 PF10087.4 gi|110667642|ref|YP_657453.1| - 0.15 11.8 0.5 2.3 8.1 0.0 2.8 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2325) TrkH PF02386.11 gi|110667643|ref|YP_657454.1| - 1.5e-55 188.1 12.5 2.2e-55 187.6 2.8 2.1 2 0 0 2 2 2 2 Cation transport protein Amidase PF01425.16 gi|110667644|ref|YP_657455.1| - 5.2e-134 447.4 7.6 5.4e-132 440.7 5.2 2.0 1 1 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.10 gi|110667645|ref|YP_657456.1| - 1.2e-18 66.6 2.9 2.5e-18 65.6 0.4 2.1 2 0 0 2 2 2 1 Glu-tRNAGln amidotransferase C subunit TFIIB PF00382.14 gi|110667646|ref|YP_657457.1| - 6.4e-43 144.4 0.3 2.5e-20 72.0 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|110667646|ref|YP_657457.1| - 8.9e-19 66.5 2.8 1.8e-18 65.5 2.0 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Ribosomal_S27e PF01667.12 gi|110667646|ref|YP_657457.1| - 0.011 15.2 0.5 0.019 14.4 0.4 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 zf-ribbon_3 PF13248.1 gi|110667646|ref|YP_657457.1| - 0.035 13.3 0.2 0.059 12.6 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|110667646|ref|YP_657457.1| - 0.036 14.3 0.8 0.036 14.3 0.5 1.8 2 0 0 2 2 2 0 Restriction alleviation protein Lar Sigma70_r4 PF04545.11 gi|110667646|ref|YP_657457.1| - 0.038 13.2 0.0 0.038 13.2 0.0 3.7 4 0 0 4 4 4 0 Sigma-70, region 4 RRN7 PF11781.3 gi|110667646|ref|YP_657457.1| - 0.064 12.7 0.9 0.11 11.9 0.6 1.4 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 Cyclin_N PF00134.18 gi|110667646|ref|YP_657457.1| - 0.084 12.4 0.1 1.4 8.4 0.0 2.3 2 0 0 2 2 2 0 Cyclin, N-terminal domain Rubredoxin PF00301.15 gi|110667646|ref|YP_657457.1| - 0.13 12.1 0.5 9.6 6.1 0.0 2.5 2 0 0 2 2 2 0 Rubredoxin OrfB_Zn_ribbon PF07282.6 gi|110667646|ref|YP_657457.1| - 0.14 11.8 0.9 0.31 10.7 0.6 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1 PF03811.8 gi|110667646|ref|YP_657457.1| - 0.18 11.3 0.9 0.39 10.2 0.1 2.0 2 0 0 2 2 2 0 InsA N-terminal domain Zn-ribbon_8 PF09723.5 gi|110667646|ref|YP_657457.1| - 4.4 7.3 5.9 3.1 7.8 0.6 2.3 1 1 1 2 2 2 0 Zinc ribbon domain NUDIX PF00293.23 gi|110667647|ref|YP_657458.1| - 5.8e-12 45.4 0.0 8.1e-12 44.9 0.0 1.3 1 0 0 1 1 1 1 NUDIX domain Staphylcoagulse PF04022.7 gi|110667647|ref|YP_657458.1| - 0.002 17.4 0.3 0.0036 16.6 0.2 1.4 1 0 0 1 1 1 1 Staphylocoagulase repeat Asn_synthase PF00733.16 gi|110667648|ref|YP_657459.1| - 1.6e-33 116.3 0.0 2.6e-33 115.6 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase PHP_C PF13263.1 gi|110667649|ref|YP_657460.1| - 1.6e-21 75.5 0.6 2.6e-20 71.6 0.2 2.2 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|110667649|ref|YP_657460.1| - 5.7e-14 52.2 0.5 1.2e-13 51.2 0.3 1.5 1 1 0 1 1 1 1 PHP domain AIRS PF00586.19 gi|110667650|ref|YP_657461.1| - 7.4e-41 138.3 12.3 2.1e-25 88.7 0.1 3.9 4 0 0 4 4 4 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|110667650|ref|YP_657461.1| - 1.2e-34 119.5 2.9 2.6e-26 92.4 0.4 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain His_biosynth PF00977.16 gi|110667652|ref|YP_657463.1| - 2.7e-77 259.0 0.1 3.1e-77 258.9 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|110667652|ref|YP_657463.1| - 7.2e-08 31.6 0.0 0.00043 19.2 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|110667652|ref|YP_657463.1| - 6.8e-07 28.6 0.8 0.00057 19.0 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|110667652|ref|YP_657463.1| - 4.4e-06 26.0 1.2 0.00099 18.3 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase PcrB PF01884.12 gi|110667652|ref|YP_657463.1| - 0.00066 18.9 0.1 0.0013 18.0 0.0 1.5 1 1 0 1 1 1 1 PcrB family IMPDH PF00478.20 gi|110667652|ref|YP_657463.1| - 0.0024 16.8 0.3 0.0077 15.1 0.0 1.7 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.16 gi|110667652|ref|YP_657463.1| - 0.026 13.4 0.6 0.1 11.5 0.0 1.9 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase Glu_synthase PF01645.12 gi|110667652|ref|YP_657463.1| - 0.036 12.9 0.0 0.054 12.4 0.0 1.2 1 0 0 1 1 1 0 Conserved region in glutamate synthase TMP-TENI PF02581.12 gi|110667652|ref|YP_657463.1| - 0.06 12.4 0.1 0.63 9.1 0.0 2.2 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI G3P_antiterm PF04309.7 gi|110667652|ref|YP_657463.1| - 0.073 12.1 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator RNA_pol_L_2 PF13656.1 gi|110667653|ref|YP_657464.1| - 4.8e-15 54.7 0.0 5.8e-15 54.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|110667653|ref|YP_657464.1| - 1.8e-05 23.7 0.0 2.3e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Lactamase_B PF00753.22 gi|110667654|ref|YP_657465.1| - 3.2e-28 98.7 2.7 5.7e-28 97.8 1.9 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|110667654|ref|YP_657465.1| - 2.1e-06 27.3 0.1 4.6e-06 26.3 0.1 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF4473 PF14747.1 gi|110667654|ref|YP_657465.1| - 0.089 13.0 0.0 0.58 10.4 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4473) AMP-binding PF00501.23 gi|110667656|ref|YP_657467.1| - 4.6e-87 292.1 0.4 5.3e-87 291.8 0.3 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|110667656|ref|YP_657467.1| - 2.2e-18 66.9 0.0 4.5e-18 65.9 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Metallophos_2 PF12850.2 gi|110667657|ref|YP_657468.1| - 7.2e-15 55.1 0.4 1.5e-14 54.0 0.2 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|110667657|ref|YP_657468.1| - 1e-11 44.5 1.8 1.7e-11 43.8 1.2 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase AAA_23 PF13476.1 gi|110667658|ref|YP_657469.1| - 1.8e-21 77.4 10.5 1.8e-21 77.4 7.3 5.9 1 1 2 3 3 2 1 AAA domain AAA_21 PF13304.1 gi|110667658|ref|YP_657469.1| - 3.2e-14 53.5 4.4 2.8e-09 37.3 0.8 2.8 3 0 0 3 3 3 2 AAA domain SMC_N PF02463.14 gi|110667658|ref|YP_657469.1| - 7.7e-14 51.4 45.5 1.3e-10 40.8 0.0 3.0 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|110667658|ref|YP_657469.1| - 6.8e-13 47.9 68.4 2.9e-09 36.0 6.8 4.3 2 1 2 4 4 4 4 AAA domain AAA_15 PF13175.1 gi|110667658|ref|YP_657469.1| - 8.8e-08 31.6 0.2 1.7e-05 24.0 0.5 4.5 4 1 0 5 5 5 2 AAA ATPase domain DUF3584 PF12128.3 gi|110667658|ref|YP_657469.1| - 5.3e-07 27.4 95.4 0.00016 19.2 27.4 4.0 3 1 1 4 4 4 3 Protein of unknown function (DUF3584) AAA_29 PF13555.1 gi|110667658|ref|YP_657469.1| - 3.4e-05 23.2 0.0 7.5e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|110667658|ref|YP_657469.1| - 7.4e-05 22.5 0.2 0.00082 19.2 0.0 2.7 2 0 0 2 2 2 1 Putative exonuclease SbcCD, C subunit DUF3450 PF11932.3 gi|110667658|ref|YP_657469.1| - 0.002 17.4 6.1 0.002 17.4 4.2 6.9 2 2 4 7 7 6 1 Protein of unknown function (DUF3450) DASH_Dad3 PF08656.5 gi|110667658|ref|YP_657469.1| - 0.0075 15.9 0.8 0.0075 15.9 0.6 6.1 5 1 0 5 5 5 1 DASH complex subunit Dad3 FliJ PF02050.11 gi|110667658|ref|YP_657469.1| - 0.0083 16.1 5.1 0.0083 16.1 3.5 7.3 3 2 2 7 7 7 2 Flagellar FliJ protein IncA PF04156.9 gi|110667658|ref|YP_657469.1| - 0.047 13.2 107.0 0.28 10.7 7.1 5.5 1 1 4 5 5 5 0 IncA protein ABC_tran PF00005.22 gi|110667658|ref|YP_657469.1| - 0.13 12.5 0.0 0.13 12.5 0.0 5.8 2 1 1 3 3 2 0 ABC transporter AAA_33 PF13671.1 gi|110667658|ref|YP_657469.1| - 0.14 12.0 0.0 0.14 12.0 0.0 3.9 3 2 0 3 3 1 0 AAA domain CENP-F_leu_zip PF10473.4 gi|110667658|ref|YP_657469.1| - 0.19 11.5 105.1 0.02 14.7 4.3 7.0 2 2 3 6 6 6 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Laminin_II PF06009.7 gi|110667658|ref|YP_657469.1| - 0.22 11.3 64.9 0.055 13.2 2.0 6.4 2 1 4 6 6 6 0 Laminin Domain II Reo_sigmaC PF04582.7 gi|110667658|ref|YP_657469.1| - 0.62 9.1 43.2 0.49 9.5 1.1 5.5 2 2 4 6 6 6 0 Reovirus sigma C capsid protein AAA_27 PF13514.1 gi|110667658|ref|YP_657469.1| - 0.71 7.4 108.5 0.62 7.6 0.0 4.1 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|110667658|ref|YP_657469.1| - 0.79 9.8 0.0 0.79 9.8 0.0 3.8 4 2 0 4 4 4 0 AAA domain NPV_P10 PF05531.7 gi|110667658|ref|YP_657469.1| - 1.1 9.5 42.0 0.076 13.2 1.5 7.7 4 2 1 6 6 6 0 Nucleopolyhedrovirus P10 protein Fib_alpha PF08702.5 gi|110667658|ref|YP_657469.1| - 1.7 8.7 58.5 0.098 12.7 5.6 5.7 3 1 1 5 5 5 0 Fibrinogen alpha/beta chain family Seryl_tRNA_N PF02403.17 gi|110667658|ref|YP_657469.1| - 6 6.9 78.2 0.16 11.9 2.2 7.6 3 2 4 7 7 7 0 Seryl-tRNA synthetase N-terminal domain Phytase PF02333.10 gi|110667659|ref|YP_657470.1| - 0.058 12.1 0.0 0.068 11.8 0.0 1.2 1 0 0 1 1 1 0 Phytase Zip PF02535.17 gi|110667660|ref|YP_657471.1| - 0.18 10.7 1.1 4 6.3 1.0 2.0 1 1 1 2 2 2 0 ZIP Zinc transporter DNA_pol_B PF00136.16 gi|110667662|ref|YP_657473.1| - 3.7e-48 164.4 0.0 1.8e-17 63.2 0.0 3.3 3 0 0 3 3 3 3 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|110667662|ref|YP_657473.1| - 1.3e-28 99.7 0.0 4.4e-20 71.7 0.0 2.5 2 0 0 2 2 2 2 DNA polymerase family B, exonuclease domain Hint PF01079.15 gi|110667662|ref|YP_657473.1| - 4.7e-12 45.5 0.0 1.6e-05 24.2 0.0 2.4 2 0 0 2 2 2 2 Hint module LAGLIDADG_3 PF14528.1 gi|110667662|ref|YP_657473.1| - 5.4e-10 39.3 0.1 0.063 13.5 0.0 4.8 4 1 1 5 5 5 4 LAGLIDADG-like domain Hint_2 PF13403.1 gi|110667662|ref|YP_657473.1| - 2.2e-08 34.1 0.0 3.7e-06 26.9 0.0 3.4 3 1 0 3 3 3 1 Hint domain Hom_end_hint PF05203.11 gi|110667662|ref|YP_657473.1| - 4.3e-05 23.3 0.1 0.0052 16.5 0.0 3.1 2 1 0 2 2 2 1 Hom_end-associated Hint PT-HINT PF07591.6 gi|110667662|ref|YP_657473.1| - 8.5e-05 22.4 0.5 0.0025 17.6 0.0 3.2 3 0 0 3 3 3 1 Pretoxin HINT domain Hom_end PF05204.9 gi|110667662|ref|YP_657473.1| - 0.00014 21.7 0.0 0.0057 16.6 0.0 3.0 3 0 0 3 3 3 1 Homing endonuclease Intein_splicing PF14890.1 gi|110667662|ref|YP_657473.1| - 0.0013 17.6 1.5 2.8 6.7 0.2 4.2 4 0 0 4 4 4 1 Intein splicing domain WhiA_N PF10298.4 gi|110667662|ref|YP_657473.1| - 0.25 11.2 0.1 1.1 9.1 0.0 2.0 2 0 0 2 2 2 0 WhiA N-terminal LAGLIDADG-like domain ABC_tran PF00005.22 gi|110667663|ref|YP_657474.1| - 1.1e-14 54.9 0.1 5.7e-14 52.5 0.1 2.0 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|110667663|ref|YP_657474.1| - 2.3e-05 23.7 0.7 0.086 12.0 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|110667663|ref|YP_657474.1| - 4.1e-05 23.6 0.1 0.00067 19.7 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|110667663|ref|YP_657474.1| - 8.3e-05 23.3 2.5 0.00059 20.6 0.2 2.7 2 2 0 2 2 2 1 AAA domain AAA PF00004.24 gi|110667663|ref|YP_657474.1| - 0.00034 20.8 0.0 0.12 12.5 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|110667663|ref|YP_657474.1| - 0.0014 18.3 0.4 1.2 8.8 0.0 2.6 2 1 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|110667663|ref|YP_657474.1| - 0.0023 17.4 0.0 0.0042 16.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|110667663|ref|YP_657474.1| - 0.0038 17.5 4.5 0.12 12.7 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|110667663|ref|YP_657474.1| - 0.0073 16.4 0.9 0.39 10.8 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|110667663|ref|YP_657474.1| - 0.014 15.2 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|110667663|ref|YP_657474.1| - 0.023 14.1 0.0 0.064 12.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|110667663|ref|YP_657474.1| - 0.066 13.1 0.2 1.1 9.1 0.0 2.6 3 0 0 3 3 3 0 AAA domain AAA_13 PF13166.1 gi|110667663|ref|YP_657474.1| - 0.081 11.3 0.0 0.12 10.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|110667663|ref|YP_657474.1| - 0.091 13.0 1.3 0.18 12.0 0.2 2.2 2 1 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|110667663|ref|YP_657474.1| - 6.5 6.0 6.2 25 4.1 4.3 1.9 1 1 0 1 1 1 0 AAA-like domain UPF0051 PF01458.12 gi|110667664|ref|YP_657475.1| - 2.6e-69 233.1 0.5 3.6e-69 232.7 0.3 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.12 gi|110667665|ref|YP_657476.1| - 5.5e-63 212.4 0.2 7.9e-63 211.9 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) HrpA_pilin PF09589.5 gi|110667666|ref|YP_657477.1| - 0.013 15.9 0.0 0.047 14.1 0.0 1.8 1 1 1 2 2 2 0 HrpA pilus formation protein Rubrerythrin PF02915.12 gi|110667666|ref|YP_657477.1| - 0.047 14.0 0.1 0.08 13.2 0.1 1.5 1 1 0 1 1 1 0 Rubrerythrin Fe_dep_repress PF01325.14 gi|110667667|ref|YP_657478.1| - 1.4e-14 53.7 0.0 2.7e-14 52.8 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|110667667|ref|YP_657478.1| - 9.6e-10 38.0 0.1 1.5e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_27 PF13463.1 gi|110667667|ref|YP_657478.1| - 2e-05 24.8 0.1 6.1e-05 23.2 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|110667667|ref|YP_657478.1| - 3.2e-05 23.4 0.0 5.4e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|110667667|ref|YP_657478.1| - 7.4e-05 22.0 0.0 0.00014 21.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|110667667|ref|YP_657478.1| - 0.00015 21.5 0.0 0.00034 20.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|110667667|ref|YP_657478.1| - 0.00019 21.0 0.0 0.00033 20.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|110667667|ref|YP_657478.1| - 0.0028 17.4 0.0 0.0053 16.5 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain FeoC PF09012.5 gi|110667667|ref|YP_657478.1| - 0.0028 17.3 0.0 0.026 14.2 0.0 2.1 2 0 0 2 2 2 1 FeoC like transcriptional regulator Rrf2 PF02082.15 gi|110667667|ref|YP_657478.1| - 0.0035 17.4 0.0 0.0071 16.4 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator TrmB PF01978.14 gi|110667667|ref|YP_657478.1| - 0.0046 16.6 0.0 0.0088 15.7 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_13 PF11972.3 gi|110667667|ref|YP_657478.1| - 0.011 15.5 0.0 0.022 14.6 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_12 PF08461.5 gi|110667667|ref|YP_657478.1| - 0.033 13.9 0.3 0.097 12.4 0.0 2.0 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_45 PF14947.1 gi|110667667|ref|YP_657478.1| - 0.043 13.6 0.0 0.067 13.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HemN_C PF06969.11 gi|110667667|ref|YP_657478.1| - 0.06 13.4 0.1 2.2 8.4 0.0 2.5 3 0 0 3 3 3 0 HemN C-terminal domain DUF4423 PF14394.1 gi|110667667|ref|YP_657478.1| - 0.071 12.6 0.0 0.12 11.9 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) Ftsk_gamma PF09397.5 gi|110667667|ref|YP_657478.1| - 0.091 12.4 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Ftsk gamma domain DUF1405 PF07187.6 gi|110667668|ref|YP_657479.1| - 3.3e-52 176.5 12.2 4.8e-52 175.9 8.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) HD PF01966.17 gi|110667669|ref|YP_657480.1| - 2.1e-12 47.0 0.3 1.2e-11 44.6 0.1 1.9 2 0 0 2 2 2 1 HD domain DUF305 PF03713.8 gi|110667669|ref|YP_657480.1| - 0.029 14.1 0.5 0.068 12.9 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF305) OrfB_IS605 PF01385.14 gi|110667670|ref|YP_657481.1| - 5.4e-30 104.4 0.8 7e-30 104.1 0.2 1.5 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|110667670|ref|YP_657481.1| - 6.9e-07 28.8 0.0 1.5e-06 27.7 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Glu_synthase PF01645.12 gi|110667671|ref|YP_657482.1| - 2.5e-153 510.3 0.5 1.4e-151 504.5 0.1 2.2 2 0 0 2 2 2 2 Conserved region in glutamate synthase GATase_2 PF00310.16 gi|110667671|ref|YP_657482.1| - 6.5e-126 419.8 0.0 2.7e-125 417.8 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferases class-II Glu_syn_central PF04898.9 gi|110667671|ref|YP_657482.1| - 2.4e-108 361.7 0.0 3.7e-108 361.1 0.0 1.3 1 0 0 1 1 1 1 Glutamate synthase central domain GXGXG PF01493.14 gi|110667671|ref|YP_657482.1| - 1.3e-61 207.1 7.6 2.5e-61 206.2 5.3 1.4 1 0 0 1 1 1 1 GXGXG motif FMN_dh PF01070.13 gi|110667671|ref|YP_657482.1| - 0.0013 17.6 3.7 0.076 11.8 1.1 3.1 3 0 0 3 3 3 2 FMN-dependent dehydrogenase HGTP_anticodon PF03129.15 gi|110667672|ref|YP_657483.1| - 1.1e-22 79.7 0.1 2.1e-22 78.8 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|110667672|ref|YP_657483.1| - 5.1e-17 61.9 0.0 1.1e-16 60.9 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) ProRS-C_1 PF09180.6 gi|110667672|ref|YP_657483.1| - 3.2e-15 55.8 0.7 1.8e-08 34.1 0.0 2.5 2 0 0 2 2 2 2 Prolyl-tRNA synthetase, C-terminal Beta-Casp PF10996.3 gi|110667673|ref|YP_657484.1| - 1.6e-33 115.3 0.0 3.3e-33 114.3 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|110667673|ref|YP_657484.1| - 3.3e-23 82.3 3.8 6.6e-23 81.3 2.7 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|110667673|ref|YP_657484.1| - 3.7e-13 49.0 0.0 1.6e-12 47.0 0.0 2.1 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|110667673|ref|YP_657484.1| - 3.7e-12 46.2 0.5 7.2e-11 41.9 0.1 2.7 3 0 0 3 3 3 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|110667673|ref|YP_657484.1| - 5.5e-08 32.2 0.0 3.3e-07 29.7 0.0 2.1 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.1 gi|110667673|ref|YP_657484.1| - 6.3e-05 22.7 0.0 0.00017 21.3 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_1 PF00013.24 gi|110667673|ref|YP_657484.1| - 6.8e-05 22.4 0.2 0.00017 21.1 0.1 1.7 1 0 0 1 1 1 1 KH domain KH_4 PF13083.1 gi|110667673|ref|YP_657484.1| - 0.0067 16.0 0.1 0.016 14.8 0.1 1.6 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|110667673|ref|YP_657484.1| - 0.012 15.2 1.1 0.029 14.0 0.8 1.6 1 0 0 1 1 1 0 KH domain DHquinase_II PF01220.14 gi|110667673|ref|YP_657484.1| - 0.17 11.2 0.0 0.31 10.3 0.0 1.4 1 0 0 1 1 1 0 Dehydroquinase class II HpcH_HpaI PF03328.9 gi|110667677|ref|YP_657488.1| - 4.2e-07 29.0 0.0 1.3e-06 27.4 0.0 1.7 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Toxin_65 PF15543.1 gi|110667677|ref|YP_657488.1| - 0.12 11.9 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 Putative toxin 65 Glyoxalase_2 PF12681.2 gi|110667678|ref|YP_657489.1| - 3.7e-15 56.4 0.3 4.4e-15 56.2 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|110667678|ref|YP_657489.1| - 3.9e-15 55.9 0.2 4.6e-15 55.7 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|110667678|ref|YP_657489.1| - 4.5e-11 42.7 0.2 7e-10 38.8 0.1 2.0 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|110667678|ref|YP_657489.1| - 0.00039 20.3 0.1 0.026 14.4 0.0 2.1 2 0 0 2 2 2 1 Glyoxalase-like domain Acetyltransf_10 PF13673.1 gi|110667678|ref|YP_657489.1| - 0.083 13.0 0.0 6.4 6.9 0.0 2.1 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain FAA_hydrolase PF01557.13 gi|110667679|ref|YP_657490.1| - 1.1e-50 172.1 0.0 1.4e-50 171.8 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family TrmB PF01978.14 gi|110667681|ref|YP_657492.1| - 1e-15 57.1 0.0 1.4e-15 56.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|110667681|ref|YP_657492.1| - 5.1e-06 26.0 0.0 8.2e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|110667681|ref|YP_657492.1| - 6.1e-06 25.8 0.0 1.1e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|110667681|ref|YP_657492.1| - 2.1e-05 24.0 0.0 3.4e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|110667681|ref|YP_657492.1| - 5.3e-05 22.8 0.0 8.6e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|110667681|ref|YP_657492.1| - 6e-05 22.7 0.0 0.0001 22.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|110667681|ref|YP_657492.1| - 6.3e-05 23.0 0.0 9e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_24 PF13412.1 gi|110667681|ref|YP_657492.1| - 0.00075 18.8 0.0 0.0014 17.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|110667681|ref|YP_657492.1| - 0.0017 18.6 0.0 0.0025 18.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_38 PF13936.1 gi|110667681|ref|YP_657492.1| - 0.0018 17.8 0.0 0.0032 16.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain RuvB_C PF05491.8 gi|110667681|ref|YP_657492.1| - 0.002 17.6 0.0 0.0033 17.0 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB C-terminus HARE-HTH PF05066.8 gi|110667681|ref|YP_657492.1| - 0.0061 16.8 0.0 0.015 15.6 0.0 1.6 1 0 0 1 1 1 1 HB1, ASXL, restriction endonuclease HTH domain HTH_5 PF01022.15 gi|110667681|ref|YP_657492.1| - 0.0084 15.7 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_29 PF13551.1 gi|110667681|ref|YP_657492.1| - 0.011 15.8 0.0 0.017 15.2 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn helix Rrf2 PF02082.15 gi|110667681|ref|YP_657492.1| - 0.021 14.9 0.0 0.037 14.1 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator Rio2_N PF09202.6 gi|110667681|ref|YP_657492.1| - 0.053 13.5 0.1 0.15 12.1 0.1 1.7 1 1 0 1 1 1 0 Rio2, N-terminal DUF387 PF04079.11 gi|110667681|ref|YP_657492.1| - 0.054 12.8 0.3 0.25 10.7 0.0 2.0 1 1 1 2 2 2 0 Putative transcriptional regulators (Ypuh-like) HTH_23 PF13384.1 gi|110667681|ref|YP_657492.1| - 0.059 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|110667681|ref|YP_657492.1| - 0.064 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain eIF-1a PF01176.14 gi|162138286|ref|YP_657493.2| - 5e-24 83.5 0.4 5.8e-24 83.2 0.3 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Glycos_transf_1 PF00534.15 gi|110667683|ref|YP_657494.1| - 1.5e-08 34.2 0.0 2.5e-08 33.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|110667683|ref|YP_657494.1| - 3.3e-06 27.2 0.0 6.4e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|110667683|ref|YP_657494.1| - 0.023 14.3 0.2 1.4 8.6 0.0 2.7 3 1 0 3 3 3 0 Glycosyltransferase Family 4 Aldo_ket_red PF00248.16 gi|110667684|ref|YP_657495.1| - 1.4e-49 168.4 0.0 1.1e-47 162.2 0.0 2.1 2 0 0 2 2 2 2 Aldo/keto reductase family GFO_IDH_MocA PF01408.17 gi|110667684|ref|YP_657495.1| - 3.4e-19 69.5 0.1 2.2e-18 66.9 0.0 2.3 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.11 gi|110667684|ref|YP_657495.1| - 8.6e-09 35.8 0.2 2.2e-08 34.5 0.2 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|110667684|ref|YP_657495.1| - 0.75 8.7 2.7 2.1 7.2 1.0 2.3 2 1 1 3 3 3 0 Saccharopine dehydrogenase CDP-OH_P_transf PF01066.16 gi|110667685|ref|YP_657496.1| - 9.6e-13 48.3 2.2 9.6e-13 48.3 1.5 2.1 3 0 0 3 3 3 1 CDP-alcohol phosphatidyltransferase YrhK PF14145.1 gi|110667685|ref|YP_657496.1| - 0.058 13.0 1.7 3.9 7.2 0.0 3.2 3 0 0 3 3 3 0 YrhK-like protein AAA_16 PF13191.1 gi|110667686|ref|YP_657497.1| - 1e-12 48.4 0.5 5.7e-12 45.9 0.2 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|110667686|ref|YP_657497.1| - 1.7e-08 34.6 0.0 6e-08 32.8 0.0 1.9 2 1 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|110667686|ref|YP_657497.1| - 0.016 14.8 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase Phe_tRNA-synt_N PF02912.13 gi|110667686|ref|YP_657497.1| - 0.062 13.0 0.0 0.66 9.7 0.0 2.2 2 0 0 2 2 2 0 Aminoacyl tRNA synthetase class II, N-terminal domain KAP_NTPase PF07693.9 gi|110667686|ref|YP_657497.1| - 0.15 11.0 0.0 0.2 10.6 0.0 1.4 1 1 0 1 1 1 0 KAP family P-loop domain FGGY_N PF00370.16 gi|110667688|ref|YP_657499.1| - 9.3e-74 247.8 0.0 1.3e-73 247.3 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|110667688|ref|YP_657499.1| - 5.5e-56 189.3 2.4 8.6e-56 188.7 1.1 1.8 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|110667688|ref|YP_657499.1| - 0.00043 19.6 0.3 0.0036 16.6 0.0 2.1 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family DAO PF01266.19 gi|110667689|ref|YP_657500.1| - 5.3e-59 199.9 1.8 7.6e-59 199.4 1.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|110667689|ref|YP_657500.1| - 7.2e-08 32.5 0.0 1.8e-05 24.6 0.0 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer2_BFD PF04324.10 gi|110667689|ref|YP_657500.1| - 7.5e-08 32.3 1.5 2.1e-07 30.8 1.0 1.8 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain FAD_binding_2 PF00890.19 gi|110667689|ref|YP_657500.1| - 3e-05 23.0 7.0 0.00022 20.2 4.9 2.0 1 1 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.13 gi|110667689|ref|YP_657500.1| - 0.015 14.9 0.4 0.034 13.8 0.3 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.1 gi|110667689|ref|YP_657500.1| - 0.02 14.9 0.2 1.4 8.9 0.1 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|110667689|ref|YP_657500.1| - 0.045 13.7 1.1 0.14 12.1 0.6 2.0 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain NAD_binding_10 PF13460.1 gi|110667689|ref|YP_657500.1| - 0.059 13.3 2.6 0.17 11.9 0.7 2.4 2 0 0 2 2 2 0 NADH(P)-binding Pyr_redox PF00070.22 gi|110667689|ref|YP_657500.1| - 0.11 12.8 1.1 0.44 10.9 0.8 2.0 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|110667689|ref|YP_657500.1| - 0.28 10.1 8.0 3.3 6.6 5.5 2.1 1 1 0 1 1 1 0 FAD binding domain Thi4 PF01946.12 gi|110667689|ref|YP_657500.1| - 0.99 8.4 7.2 0.89 8.6 0.1 2.5 3 0 0 3 3 3 0 Thi4 family FAD_binding_2 PF00890.19 gi|110667690|ref|YP_657501.1| - 7.8e-42 143.5 0.6 1e-41 143.2 0.4 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|110667690|ref|YP_657501.1| - 5.4e-07 29.6 0.2 0.00085 19.2 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|110667690|ref|YP_657501.1| - 1.6e-06 27.2 1.0 0.00032 19.7 0.5 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|110667690|ref|YP_657501.1| - 3.4e-06 26.1 0.3 3.4e-06 26.1 0.2 2.4 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|110667690|ref|YP_657501.1| - 0.0002 20.5 1.1 0.0002 20.5 0.8 1.7 3 0 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|110667690|ref|YP_657501.1| - 0.00085 18.4 0.2 0.0033 16.5 0.2 1.7 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|110667690|ref|YP_657501.1| - 0.0016 16.9 0.2 0.005 15.3 0.1 1.8 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|110667690|ref|YP_657501.1| - 0.0027 17.6 1.1 0.016 15.1 0.3 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.13 gi|110667690|ref|YP_657501.1| - 0.011 15.4 0.1 0.018 14.7 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|110667690|ref|YP_657501.1| - 0.021 13.7 0.2 0.033 13.0 0.2 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Thi4 PF01946.12 gi|110667690|ref|YP_657501.1| - 0.025 13.6 0.2 0.05 12.6 0.1 1.5 1 0 0 1 1 1 0 Thi4 family Pyr_redox PF00070.22 gi|110667690|ref|YP_657501.1| - 0.032 14.6 0.1 0.099 13.0 0.1 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase CCG PF02754.11 gi|110667691|ref|YP_657502.1| - 1.6e-19 69.6 0.8 3.5e-09 36.5 0.0 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|110667691|ref|YP_657502.1| - 2.4e-08 33.8 7.0 2.4e-08 33.8 4.9 2.9 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|110667691|ref|YP_657502.1| - 1.4e-07 31.7 11.6 2.7e-07 30.8 4.5 3.3 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|110667691|ref|YP_657502.1| - 1.5e-06 28.4 4.6 0.0091 16.3 0.2 3.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|110667691|ref|YP_657502.1| - 0.0003 20.9 14.6 0.0037 17.4 8.3 3.5 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|110667691|ref|YP_657502.1| - 0.00049 20.7 9.6 0.042 14.5 0.2 3.5 4 0 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|110667691|ref|YP_657502.1| - 0.0006 20.1 9.9 0.0006 20.1 6.8 2.8 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|110667691|ref|YP_657502.1| - 0.00061 19.5 18.8 0.00085 19.0 9.1 3.4 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|110667691|ref|YP_657502.1| - 0.0022 17.8 7.5 0.1 12.4 0.5 3.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain DUF3390 PF11870.3 gi|110667691|ref|YP_657502.1| - 0.091 12.7 0.1 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3390) PhoU PF01895.14 gi|110667692|ref|YP_657503.1| - 1.8e-32 111.6 8.1 2.9e-19 69.3 0.3 2.2 2 0 0 2 2 2 2 PhoU domain CppA_C PF14507.1 gi|110667692|ref|YP_657503.1| - 0.11 12.7 0.3 1.3 9.2 0.2 2.4 1 1 1 2 2 2 0 CppA C-terminal HrpB7 PF09486.5 gi|110667693|ref|YP_657504.1| - 0.49 10.3 5.4 0.23 11.4 0.9 2.4 3 0 0 3 3 3 0 Bacterial type III secretion protein (HrpB7) PAS_9 PF13426.1 gi|110667694|ref|YP_657505.1| - 3.6e-54 181.5 8.7 8.7e-13 48.5 0.0 6.8 6 0 0 6 6 6 6 PAS domain PAS_3 PF08447.6 gi|110667694|ref|YP_657505.1| - 5.5e-37 125.7 11.4 4.6e-12 45.8 0.0 7.3 7 0 0 7 7 7 5 PAS fold PAS_4 PF08448.5 gi|110667694|ref|YP_657505.1| - 2.5e-28 98.3 6.5 2.4e-05 24.3 0.0 7.8 7 0 0 7 7 7 6 PAS fold PAS PF00989.19 gi|110667694|ref|YP_657505.1| - 7.5e-28 96.5 8.6 1.7e-06 27.7 0.0 8.4 7 2 0 7 7 7 4 PAS fold PAS_8 PF13188.1 gi|110667694|ref|YP_657505.1| - 4.2e-25 86.7 0.5 4.4e-07 29.5 0.0 6.4 6 0 0 6 6 6 4 PAS domain HTH_10 PF04967.7 gi|110667694|ref|YP_657505.1| - 2.4e-16 59.0 0.0 5.7e-16 57.8 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.1 gi|110667694|ref|YP_657505.1| - 2e-10 41.3 5.6 8.2e-08 32.8 0.1 4.0 4 0 0 4 4 4 1 GAF domain GAF_3 PF13492.1 gi|110667694|ref|YP_657505.1| - 1.1e-09 38.4 0.4 0.04 14.0 0.0 3.8 3 0 0 3 3 3 3 GAF domain GAF PF01590.21 gi|110667694|ref|YP_657505.1| - 2.1e-05 24.6 0.6 0.00032 20.8 0.0 3.3 4 0 0 4 4 4 1 GAF domain HTH_22 PF13309.1 gi|110667694|ref|YP_657505.1| - 0.0073 16.0 0.1 0.18 11.5 0.0 3.0 3 0 0 3 3 3 1 HTH domain YqzH PF14164.1 gi|110667694|ref|YP_657505.1| - 0.12 12.3 1.0 8 6.4 0.2 3.1 2 0 0 2 2 2 0 YqzH-like protein TrmB PF01978.14 gi|110667695|ref|YP_657506.1| - 6.1e-07 29.0 0.0 9e-07 28.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|110667695|ref|YP_657506.1| - 1.3e-05 24.8 0.0 1.8e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|110667695|ref|YP_657506.1| - 1.6e-05 24.4 0.0 3.1e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|110667695|ref|YP_657506.1| - 3.7e-05 23.0 0.0 6.7e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|110667695|ref|YP_657506.1| - 5.8e-05 22.8 0.0 0.00015 21.4 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|110667695|ref|YP_657506.1| - 0.00087 18.8 0.0 0.0014 18.2 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_IclR PF09339.5 gi|110667695|ref|YP_657506.1| - 0.0011 18.4 0.0 0.0019 17.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|110667695|ref|YP_657506.1| - 0.0028 17.3 0.0 0.0059 16.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.1 gi|110667695|ref|YP_657506.1| - 0.0037 17.2 0.0 0.0068 16.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.12 gi|110667695|ref|YP_657506.1| - 0.0052 16.3 0.0 0.0079 15.8 0.0 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_AsnC-type PF13404.1 gi|110667695|ref|YP_657506.1| - 0.0084 15.6 0.1 0.014 14.9 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_29 PF13551.1 gi|110667695|ref|YP_657506.1| - 0.015 15.4 0.0 0.026 14.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix PadR PF03551.9 gi|110667695|ref|YP_657506.1| - 0.022 14.5 0.0 0.034 13.9 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family GntR PF00392.16 gi|110667695|ref|YP_657506.1| - 0.025 14.0 0.0 0.049 13.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_11 PF08279.7 gi|110667695|ref|YP_657506.1| - 0.03 13.9 0.0 0.054 13.1 0.0 1.4 1 0 0 1 1 1 0 HTH domain FUR PF01475.14 gi|110667695|ref|YP_657506.1| - 0.05 13.5 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_36 PF13730.1 gi|110667695|ref|YP_657506.1| - 0.056 13.5 0.0 0.095 12.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|110667695|ref|YP_657506.1| - 0.2 11.2 0.9 0.35 10.4 0.2 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|110667697|ref|YP_657508.1| - 4.8e-06 26.2 0.1 6.7e-06 25.8 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|110667697|ref|YP_657508.1| - 2.2e-05 23.7 0.0 3.4e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|110667697|ref|YP_657508.1| - 0.00023 20.6 0.0 0.00035 20.0 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|110667697|ref|YP_657508.1| - 0.00028 20.4 0.0 0.0004 19.9 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|110667697|ref|YP_657508.1| - 0.00031 20.3 0.0 0.00048 19.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|110667697|ref|YP_657508.1| - 0.0023 17.6 0.0 0.0037 16.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|110667697|ref|YP_657508.1| - 0.0048 16.5 0.0 0.0078 15.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|110667697|ref|YP_657508.1| - 0.01 15.4 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_36 PF13730.1 gi|110667697|ref|YP_657508.1| - 0.055 13.6 0.0 0.086 12.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.9 gi|110667697|ref|YP_657508.1| - 0.076 12.7 0.0 0.17 11.6 0.0 1.6 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family HTH_AsnC-type PF13404.1 gi|110667697|ref|YP_657508.1| - 0.12 11.9 0.1 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_23 PF13384.1 gi|110667697|ref|YP_657508.1| - 0.14 11.8 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain PP_kinase_C PF13090.1 gi|110667698|ref|YP_657509.1| - 3.6e-153 509.3 0.0 5e-153 508.8 0.0 1.2 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain PP_kinase PF02503.12 gi|110667698|ref|YP_657509.1| - 4.1e-65 219.1 4.2 6.3e-65 218.5 2.9 1.3 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.1 gi|110667698|ref|YP_657509.1| - 8.1e-37 125.6 0.1 3e-36 123.8 0.0 2.1 2 0 0 2 2 2 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.1 gi|110667698|ref|YP_657509.1| - 9.6e-11 41.5 0.0 3.4e-06 26.8 0.0 2.5 2 0 0 2 2 2 2 PLD-like domain HTH_OrfB_IS605 PF12323.3 gi|110667699|ref|YP_657510.1| - 6.7e-10 38.1 0.9 8.1e-10 37.8 0.6 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain zf-TFIIB PF13453.1 gi|110667700|ref|YP_657511.1| - 0.00074 18.6 2.2 0.0011 18.0 0.9 1.8 2 0 0 2 2 2 1 Transcription factor zinc-finger zf-FPG_IleRS PF06827.9 gi|110667700|ref|YP_657511.1| - 0.0016 18.0 1.2 0.0029 17.2 0.9 1.4 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS DZR PF12773.2 gi|110667700|ref|YP_657511.1| - 0.0021 17.8 0.5 0.0041 16.8 0.3 1.5 1 0 0 1 1 1 1 Double zinc ribbon Lar_restr_allev PF14354.1 gi|110667700|ref|YP_657511.1| - 0.0029 17.8 2.2 0.006 16.8 1.5 1.7 1 1 0 1 1 1 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|110667700|ref|YP_657511.1| - 0.0053 15.9 3.2 0.017 14.3 2.3 1.8 1 1 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|110667700|ref|YP_657511.1| - 0.023 13.9 1.1 0.043 13.1 0.8 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding Elf1 PF05129.8 gi|110667700|ref|YP_657511.1| - 0.028 14.1 0.1 0.046 13.4 0.1 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zinc_ribbon_2 PF13240.1 gi|110667700|ref|YP_657511.1| - 0.039 13.4 5.0 0.75 9.3 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|110667700|ref|YP_657511.1| - 0.039 13.6 1.3 3.4 7.4 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal UPF0547 PF10571.4 gi|110667700|ref|YP_657511.1| - 0.052 13.2 2.3 0.43 10.3 0.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF2387 PF09526.5 gi|110667700|ref|YP_657511.1| - 0.064 13.1 1.5 0.17 11.8 1.0 1.9 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) DUF3994 PF13159.1 gi|110667700|ref|YP_657511.1| - 0.084 13.1 3.7 0.12 12.6 2.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3994) zf-C2H2_4 PF13894.1 gi|110667700|ref|YP_657511.1| - 0.11 12.8 0.7 2.8 8.4 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger SelP_N PF04592.9 gi|110667700|ref|YP_657511.1| - 0.13 11.6 1.3 0.16 11.3 0.9 1.0 1 0 0 1 1 1 0 Selenoprotein P, N terminal region Ribosomal_S27e PF01667.12 gi|110667700|ref|YP_657511.1| - 0.14 11.6 1.0 0.2 11.2 0.7 1.2 1 0 0 1 1 1 0 Ribosomal protein S27 DUF3797 PF12677.2 gi|110667700|ref|YP_657511.1| - 0.16 11.6 0.4 3 7.5 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Zn-ribbon_8 PF09723.5 gi|110667700|ref|YP_657511.1| - 0.16 11.9 1.2 0.39 10.7 0.8 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zf-NADH-PPase PF09297.6 gi|110667700|ref|YP_657511.1| - 3.8 7.1 5.9 24 4.5 4.1 2.1 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Actin PF00022.14 gi|110667701|ref|YP_657512.1| - 0.021 13.2 0.0 0.25 9.7 0.0 2.1 2 0 0 2 2 2 0 Actin AF1Q PF15017.1 gi|110667702|ref|YP_657513.1| - 0.64 9.9 5.9 6.6 6.7 0.1 2.3 2 0 0 2 2 2 0 Drug resistance and apoptosis regulator DUF2721 PF11026.3 gi|110667702|ref|YP_657513.1| - 3.6 7.2 7.4 3.3 7.3 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) DUF58 PF01882.13 gi|110667703|ref|YP_657514.1| - 6.3e-17 61.4 0.1 1.3e-16 60.5 0.1 1.7 1 1 0 1 1 1 1 Protein of unknown function DUF58 VWA_2 PF13519.1 gi|110667703|ref|YP_657514.1| - 6.5e-05 23.0 0.0 8.8e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|110667703|ref|YP_657514.1| - 0.00031 19.9 0.1 0.004 16.3 0.1 2.1 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein AAA_3 PF07726.6 gi|110667704|ref|YP_657515.1| - 6.2e-62 207.0 0.1 9e-62 206.4 0.1 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|110667704|ref|YP_657515.1| - 6.8e-11 42.0 0.0 1.1e-10 41.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|110667704|ref|YP_657515.1| - 2.3e-07 29.9 0.0 2e-06 26.8 0.0 2.0 1 1 0 1 1 1 1 MCM2/3/5 family AAA PF00004.24 gi|110667704|ref|YP_657515.1| - 2.2e-05 24.6 0.0 5.3e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|110667704|ref|YP_657515.1| - 0.00054 19.0 0.1 0.0072 15.3 0.1 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|110667704|ref|YP_657515.1| - 0.0011 18.4 0.0 0.0043 16.5 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|110667704|ref|YP_657515.1| - 0.052 12.7 0.0 0.5 9.4 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF2570 PF10828.3 gi|110667705|ref|YP_657516.1| - 0.079 12.5 0.9 1.1 8.9 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2570) Myosin_tail_1 PF01576.14 gi|110667706|ref|YP_657517.1| - 2.4e-09 35.5 29.4 1.8e-08 32.6 20.4 1.8 1 1 0 1 1 1 1 Myosin tail CENP-F_leu_zip PF10473.4 gi|110667706|ref|YP_657517.1| - 3.7e-09 36.5 30.1 5.5e-06 26.2 7.4 2.1 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Laminin_I PF06008.9 gi|110667706|ref|YP_657517.1| - 5.6e-09 35.7 21.0 1.4e-07 31.1 6.7 2.1 2 0 0 2 2 2 2 Laminin Domain I Reo_sigmaC PF04582.7 gi|110667706|ref|YP_657517.1| - 8.5e-09 35.0 13.9 1.6e-08 34.0 9.3 1.5 1 1 1 2 2 2 2 Reovirus sigma C capsid protein TMF_DNA_bd PF12329.3 gi|110667706|ref|YP_657517.1| - 1.4e-08 34.4 15.7 2e-05 24.3 3.7 3.4 1 1 3 4 4 4 2 TATA element modulatory factor 1 DNA binding Tropomyosin_1 PF12718.2 gi|110667706|ref|YP_657517.1| - 1.4e-08 34.6 30.6 0.00014 21.7 1.2 2.1 1 1 1 2 2 2 2 Tropomyosin like TPR_MLP1_2 PF07926.7 gi|110667706|ref|YP_657517.1| - 3.3e-08 33.3 29.9 1.3e-05 24.9 20.7 2.1 1 1 0 1 1 1 1 TPR/MLP1/MLP2-like protein DivIC PF04977.10 gi|110667706|ref|YP_657517.1| - 7.5e-08 31.7 26.3 0.014 14.8 0.2 4.4 1 1 4 5 5 5 3 Septum formation initiator WEMBL PF05701.6 gi|110667706|ref|YP_657517.1| - 1e-07 30.8 18.5 1.4e-07 30.3 12.8 1.2 1 0 0 1 1 1 1 Weak chloroplast movement under blue light bZIP_1 PF00170.16 gi|110667706|ref|YP_657517.1| - 4.5e-07 29.7 21.9 0.006 16.5 0.9 4.3 1 1 2 3 3 3 2 bZIP transcription factor ADIP PF11559.3 gi|110667706|ref|YP_657517.1| - 6.2e-07 29.4 30.7 0.0022 17.9 1.1 3.1 1 1 2 3 3 3 2 Afadin- and alpha -actinin-Binding IncA PF04156.9 gi|110667706|ref|YP_657517.1| - 6.3e-07 29.1 51.5 6.1e-06 25.9 13.1 3.0 1 1 2 3 3 2 2 IncA protein Tropomyosin PF00261.15 gi|110667706|ref|YP_657517.1| - 1.1e-06 27.9 23.4 9.9e-05 21.5 9.6 2.4 1 1 1 2 2 2 2 Tropomyosin DUF1664 PF07889.7 gi|110667706|ref|YP_657517.1| - 1.3e-06 28.2 13.3 6.8e-05 22.6 3.2 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) CCDC144C PF14915.1 gi|110667706|ref|YP_657517.1| - 2.2e-06 26.8 26.1 3.4e-06 26.2 18.1 1.3 1 0 0 1 1 1 1 CCDC144C protein coiled-coil region TBPIP PF07106.8 gi|110667706|ref|YP_657517.1| - 2.2e-06 27.3 23.5 0.00039 20.0 5.5 2.2 1 1 1 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) PspA_IM30 PF04012.7 gi|110667706|ref|YP_657517.1| - 2.4e-06 27.0 24.0 0.002 17.5 3.2 2.5 1 1 1 2 2 2 2 PspA/IM30 family ERM PF00769.14 gi|110667706|ref|YP_657517.1| - 2.5e-06 27.1 25.6 3.7e-06 26.6 9.3 2.0 1 1 1 2 2 2 1 Ezrin/radixin/moesin family AAA_13 PF13166.1 gi|110667706|ref|YP_657517.1| - 3.7e-06 25.7 15.3 4.6e-06 25.3 10.6 1.0 1 0 0 1 1 1 1 AAA domain DUF972 PF06156.8 gi|110667706|ref|YP_657517.1| - 3.8e-06 27.1 24.7 0.00035 20.9 0.8 3.1 1 1 2 3 3 3 1 Protein of unknown function (DUF972) Shugoshin_N PF07558.6 gi|110667706|ref|YP_657517.1| - 4.3e-06 26.3 12.4 0.00046 19.8 1.0 4.2 2 1 2 4 4 4 2 Shugoshin N-terminal coiled-coil region HALZ PF02183.13 gi|110667706|ref|YP_657517.1| - 6e-06 25.8 24.6 0.011 15.3 0.2 4.7 2 2 2 4 4 4 3 Homeobox associated leucine zipper ATG16 PF08614.6 gi|110667706|ref|YP_657517.1| - 9.9e-06 25.5 31.4 5.2e-05 23.1 11.2 2.0 1 1 1 2 2 2 1 Autophagy protein 16 (ATG16) DUF2968 PF11180.3 gi|110667706|ref|YP_657517.1| - 1.1e-05 24.9 28.1 0.0001 21.7 5.3 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF2968) Filament PF00038.16 gi|110667706|ref|YP_657517.1| - 1.3e-05 24.8 25.6 0.0013 18.2 8.8 2.5 1 1 1 2 2 2 2 Intermediate filament protein Spc7 PF08317.6 gi|110667706|ref|YP_657517.1| - 2.4e-05 23.1 24.4 0.0061 15.2 8.7 2.0 1 1 1 2 2 2 2 Spc7 kinetochore protein Laminin_II PF06009.7 gi|110667706|ref|YP_657517.1| - 2.7e-05 23.9 21.4 0.0031 17.2 7.5 2.7 1 1 1 2 2 2 2 Laminin Domain II FlaC_arch PF05377.6 gi|110667706|ref|YP_657517.1| - 2.8e-05 23.9 26.8 0.018 14.9 1.5 5.4 1 1 4 5 5 5 3 Flagella accessory protein C (FlaC) FliJ PF02050.11 gi|110667706|ref|YP_657517.1| - 4e-05 23.6 23.0 0.0023 17.9 7.3 2.3 1 1 1 2 2 2 2 Flagellar FliJ protein MAD PF05557.8 gi|110667706|ref|YP_657517.1| - 4e-05 21.9 28.2 6.3e-05 21.2 5.4 2.0 1 1 1 2 2 2 1 Mitotic checkpoint protein Atg14 PF10186.4 gi|110667706|ref|YP_657517.1| - 4.5e-05 22.5 22.3 0.0074 15.2 10.3 2.1 1 1 1 2 2 2 2 UV radiation resistance protein and autophagy-related subunit 14 GAS PF13851.1 gi|110667706|ref|YP_657517.1| - 4.7e-05 22.6 10.6 4.7e-05 22.6 7.4 2.2 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding DUF4201 PF13870.1 gi|110667706|ref|YP_657517.1| - 4.8e-05 22.8 18.9 0.023 14.1 0.7 2.6 1 1 1 2 2 2 2 Domain of unknown function (DUF4201) bZIP_2 PF07716.10 gi|110667706|ref|YP_657517.1| - 5.1e-05 23.0 31.7 0.016 15.0 0.3 5.6 2 1 3 5 5 4 3 Basic region leucine zipper COG2 PF06148.6 gi|110667706|ref|YP_657517.1| - 8.8e-05 22.3 18.7 0.083 12.7 0.8 3.0 1 1 2 3 3 3 2 COG (conserved oligomeric Golgi) complex component, COG2 CCDC155 PF14662.1 gi|110667706|ref|YP_657517.1| - 9.5e-05 22.0 33.5 0.00015 21.4 18.6 2.1 1 1 1 2 2 2 1 Coiled-coil region of CCDC155 DUF3584 PF12128.3 gi|110667706|ref|YP_657517.1| - 0.00019 18.9 23.3 0.00034 18.1 16.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) DUF745 PF05335.8 gi|110667706|ref|YP_657517.1| - 0.00019 21.0 15.2 0.00019 21.0 10.5 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF745) Seryl_tRNA_N PF02403.17 gi|110667706|ref|YP_657517.1| - 0.00021 21.2 20.5 0.013 15.4 2.6 2.3 1 1 1 2 2 2 2 Seryl-tRNA synthetase N-terminal domain AAA_27 PF13514.1 gi|110667706|ref|YP_657517.1| - 0.00025 18.8 18.3 0.00033 18.5 12.7 1.0 1 0 0 1 1 1 1 AAA domain EzrA PF06160.7 gi|110667706|ref|YP_657517.1| - 0.00028 19.2 20.7 0.017 13.3 6.1 2.1 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA PEARLI-4 PF05278.7 gi|110667706|ref|YP_657517.1| - 0.00028 20.3 9.0 0.011 15.1 0.9 2.3 1 1 1 2 2 2 1 Arabidopsis phospholipase-like protein (PEARLI 4) Syntaxin-6_N PF09177.6 gi|110667706|ref|YP_657517.1| - 0.00034 20.9 20.9 0.0011 19.2 3.9 3.1 1 1 2 3 3 3 1 Syntaxin 6, N-terminal IFT57 PF10498.4 gi|110667706|ref|YP_657517.1| - 0.00034 19.4 15.7 0.00034 19.4 10.9 2.0 1 1 1 2 2 2 1 Intra-flagellar transport protein 57 DivIVA PF05103.8 gi|110667706|ref|YP_657517.1| - 0.00038 20.4 24.6 0.01 15.9 11.8 2.6 1 1 2 3 3 3 1 DivIVA protein Cast PF10174.4 gi|110667706|ref|YP_657517.1| - 0.00045 18.4 27.7 0.029 12.4 12.6 2.0 1 1 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone Taxilin PF09728.4 gi|110667706|ref|YP_657517.1| - 0.00046 19.3 19.2 0.00067 18.8 13.3 1.3 1 0 0 1 1 1 1 Myosin-like coiled-coil protein BLOC1_2 PF10046.4 gi|110667706|ref|YP_657517.1| - 0.00048 20.2 20.2 0.0017 18.4 1.9 3.4 1 1 2 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 APG6 PF04111.7 gi|110667706|ref|YP_657517.1| - 0.00054 19.1 28.3 0.012 14.7 0.9 2.0 1 1 1 2 2 2 2 Autophagy protein Apg6 Rootletin PF15035.1 gi|110667706|ref|YP_657517.1| - 0.00057 19.9 31.5 0.15 12.0 5.3 3.4 1 1 2 3 3 3 1 Ciliary rootlet component, centrosome cohesion DUF812 PF05667.6 gi|110667706|ref|YP_657517.1| - 0.00066 18.3 21.7 0.1 11.1 10.8 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF812) MscS_porin PF12795.2 gi|110667706|ref|YP_657517.1| - 0.0007 18.9 38.9 0.014 14.7 26.2 2.2 1 1 0 1 1 1 1 Mechanosensitive ion channel porin domain Cep57_CLD_2 PF14197.1 gi|110667706|ref|YP_657517.1| - 0.00079 19.3 3.5 0.00079 19.3 2.4 3.3 1 1 2 3 3 3 1 Centrosome localisation domain of PPC89 DUF2205 PF10224.4 gi|110667706|ref|YP_657517.1| - 0.00083 18.8 2.3 0.00083 18.8 1.6 3.4 1 1 3 4 4 3 1 Predicted coiled-coil protein (DUF2205) Vps52 PF04129.7 gi|110667706|ref|YP_657517.1| - 0.00097 17.7 4.4 0.00097 17.7 3.0 2.0 1 1 1 2 2 2 1 Vps52 / Sac2 family DUF869 PF05911.6 gi|110667706|ref|YP_657517.1| - 0.001 17.4 23.2 0.0022 16.3 16.1 1.4 1 1 0 1 1 1 1 Plant protein of unknown function (DUF869) DUF948 PF06103.6 gi|110667706|ref|YP_657517.1| - 0.0014 18.4 13.8 0.15 11.9 0.6 3.5 1 1 2 3 3 3 1 Bacterial protein of unknown function (DUF948) Uds1 PF15456.1 gi|110667706|ref|YP_657517.1| - 0.0014 18.6 14.1 0.0014 18.6 9.7 2.4 1 1 0 2 2 2 1 Up-regulated During Septation BRE1 PF08647.6 gi|110667706|ref|YP_657517.1| - 0.0015 18.4 20.3 0.0051 16.7 6.4 3.2 1 1 2 3 3 3 1 BRE1 E3 ubiquitin ligase CENP-Q PF13094.1 gi|110667706|ref|YP_657517.1| - 0.0019 18.2 34.5 0.1 12.5 9.3 3.0 1 1 2 3 3 3 1 CENP-Q, a CENPA-CAD centromere complex subunit DUF2730 PF10805.3 gi|110667706|ref|YP_657517.1| - 0.002 17.8 12.8 0.16 11.7 1.7 3.0 1 1 1 2 2 2 1 Protein of unknown function (DUF2730) Rab5-bind PF09311.6 gi|110667706|ref|YP_657517.1| - 0.0021 18.0 35.0 0.018 14.9 17.8 2.7 1 1 1 2 2 2 1 Rabaptin-like protein NPV_P10 PF05531.7 gi|110667706|ref|YP_657517.1| - 0.0023 18.1 20.5 0.97 9.7 1.8 3.5 1 1 3 4 4 4 0 Nucleopolyhedrovirus P10 protein HOOK PF05622.7 gi|110667706|ref|YP_657517.1| - 0.0023 15.8 27.5 0.015 13.1 19.1 1.8 1 1 0 1 1 1 1 HOOK protein Gp58 PF07902.6 gi|110667706|ref|YP_657517.1| - 0.0026 16.0 12.4 0.0033 15.7 8.6 1.1 1 0 0 1 1 1 1 gp58-like protein Mod_r PF07200.8 gi|110667706|ref|YP_657517.1| - 0.0027 17.6 24.7 0.22 11.4 6.7 2.3 1 1 1 2 2 2 2 Modifier of rudimentary (Mod(r)) protein DUF904 PF06005.7 gi|110667706|ref|YP_657517.1| - 0.003 17.8 36.7 0.44 10.8 6.5 4.2 1 1 2 3 3 2 1 Protein of unknown function (DUF904) AIP3 PF03915.8 gi|110667706|ref|YP_657517.1| - 0.0033 16.4 13.6 0.0042 16.0 9.4 1.1 1 0 0 1 1 1 1 Actin interacting protein 3 TSC22 PF01166.13 gi|110667706|ref|YP_657517.1| - 0.0034 17.3 0.8 0.0034 17.3 0.6 4.7 1 1 3 4 4 3 1 TSC-22/dip/bun family Kinesin-relat_1 PF12711.2 gi|110667706|ref|YP_657517.1| - 0.0049 17.2 4.6 0.0049 17.2 3.2 3.2 1 1 2 3 3 2 1 Kinesin motor DUF4363 PF14276.1 gi|110667706|ref|YP_657517.1| - 0.0064 16.1 5.0 0.04 13.6 0.0 2.7 1 1 0 2 2 2 1 Domain of unknown function (DUF4363) Nup54 PF13874.1 gi|110667706|ref|YP_657517.1| - 0.0066 16.1 20.8 0.0088 15.7 8.5 2.5 1 1 1 2 2 2 1 Nucleoporin complex subunit 54 WXG100 PF06013.7 gi|110667706|ref|YP_657517.1| - 0.0069 16.3 21.3 1.9 8.5 0.1 4.3 1 1 3 4 4 4 0 Proteins of 100 residues with WXG TMPIT PF07851.8 gi|110667706|ref|YP_657517.1| - 0.0071 15.4 15.5 0.18 10.8 5.4 2.0 1 1 1 2 2 2 2 TMPIT-like protein Herpes_U30 PF04523.8 gi|110667706|ref|YP_657517.1| - 0.0078 13.7 8.3 0.0096 13.4 5.8 1.0 1 0 0 1 1 1 1 Herpes virus tegument protein U30 TMF_TATA_bd PF12325.3 gi|110667706|ref|YP_657517.1| - 0.0083 15.8 28.9 0.037 13.7 0.5 3.2 1 1 2 3 3 3 1 TATA element modulatory factor 1 TATA binding Prefoldin_2 PF01920.15 gi|110667706|ref|YP_657517.1| - 0.0099 15.6 26.1 2.2 8.1 3.5 4.0 1 1 2 3 3 3 0 Prefoldin subunit MCPsignal PF00015.16 gi|110667706|ref|YP_657517.1| - 0.011 15.2 12.6 0.011 15.3 7.9 1.5 1 1 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF4094 PF13334.1 gi|110667706|ref|YP_657517.1| - 0.012 15.9 13.9 0.75 10.2 1.4 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4094) Fez1 PF06818.10 gi|110667706|ref|YP_657517.1| - 0.013 15.5 24.7 0.11 12.4 15.9 2.1 1 1 0 1 1 1 0 Fez1 COG5 PF10392.4 gi|110667706|ref|YP_657517.1| - 0.013 15.4 15.1 0.29 11.0 0.8 3.0 1 1 1 2 2 2 0 Golgi transport complex subunit 5 LMBR1 PF04791.11 gi|110667706|ref|YP_657517.1| - 0.014 14.0 5.5 0.016 13.7 3.8 1.3 1 0 0 1 1 1 0 LMBR1-like membrane protein HrpB7 PF09486.5 gi|110667706|ref|YP_657517.1| - 0.014 15.3 15.6 0.47 10.3 10.7 3.1 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) Fib_alpha PF08702.5 gi|110667706|ref|YP_657517.1| - 0.014 15.4 18.1 0.063 13.4 10.4 2.1 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family RTBV_P46 PF06216.6 gi|110667706|ref|YP_657517.1| - 0.015 14.1 9.3 0.12 11.2 0.6 2.6 1 1 1 3 3 3 0 Rice tungro bacilliform virus P46 protein DUF3450 PF11932.3 gi|110667706|ref|YP_657517.1| - 0.015 14.5 27.9 0.15 11.2 8.4 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) Exonuc_VII_L PF02601.10 gi|110667706|ref|YP_657517.1| - 0.016 14.4 14.4 0.023 13.8 10.0 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit Macoilin PF09726.4 gi|110667706|ref|YP_657517.1| - 0.017 13.4 24.5 0.033 12.4 16.8 1.5 1 1 0 1 1 1 0 Transmembrane protein MHC2-interact PF09307.5 gi|110667706|ref|YP_657517.1| - 0.018 14.8 6.9 0.072 12.8 0.6 3.3 1 1 3 4 4 3 0 CLIP, MHC2 interacting DegS PF05384.6 gi|110667706|ref|YP_657517.1| - 0.018 14.2 17.3 0.7 9.0 0.3 2.8 1 1 1 2 2 2 0 Sensor protein DegS Leu_zip PF15294.1 gi|110667706|ref|YP_657517.1| - 0.018 14.1 24.8 0.22 10.5 10.2 2.7 1 1 0 2 2 2 0 Leucine zipper LXG PF04740.7 gi|110667706|ref|YP_657517.1| - 0.018 14.8 17.2 0.12 12.2 8.8 2.3 1 1 1 2 2 2 0 LXG domain of WXG superfamily DUF4200 PF13863.1 gi|110667706|ref|YP_657517.1| - 0.019 14.8 23.8 0.02 14.8 9.5 3.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4200) Bacillus_HBL PF05791.6 gi|110667706|ref|YP_657517.1| - 0.019 14.3 16.7 0.19 11.0 1.9 2.1 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) HsbA PF12296.3 gi|110667706|ref|YP_657517.1| - 0.02 14.7 6.0 0.041 13.7 2.8 2.2 1 1 1 2 2 2 0 Hydrophobic surface binding protein A DUF4140 PF13600.1 gi|110667706|ref|YP_657517.1| - 0.024 15.0 25.2 0.22 12.0 1.5 3.7 1 1 2 3 3 2 0 N-terminal domain of unknown function (DUF4140) Snapin_Pallidin PF14712.1 gi|110667706|ref|YP_657517.1| - 0.026 14.8 18.9 1.1 9.5 0.6 3.1 1 1 2 3 3 3 0 Snapin/Pallidin Prominin PF05478.6 gi|110667706|ref|YP_657517.1| - 0.026 12.0 18.0 0.066 10.7 8.0 2.0 1 1 1 2 2 2 0 Prominin Prefoldin PF02996.12 gi|110667706|ref|YP_657517.1| - 0.027 14.1 21.9 0.14 11.8 2.5 3.9 1 1 2 4 4 4 0 Prefoldin subunit DUF724 PF05266.9 gi|110667706|ref|YP_657517.1| - 0.027 14.0 16.2 0.1 12.2 3.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF724) DUF2450 PF10475.4 gi|110667706|ref|YP_657517.1| - 0.028 13.3 11.8 0.052 12.4 8.1 1.4 1 1 0 1 1 1 0 Protein of unknown function N-terminal domain (DUF2450) RmuC PF02646.11 gi|110667706|ref|YP_657517.1| - 0.028 13.2 17.0 0.2 10.4 4.5 2.7 1 1 2 3 3 3 0 RmuC family Mnd1 PF03962.10 gi|110667706|ref|YP_657517.1| - 0.033 13.8 23.5 35 3.9 16.2 2.5 1 1 0 1 1 1 0 Mnd1 family Lebercilin PF15619.1 gi|110667706|ref|YP_657517.1| - 0.035 13.5 27.6 1.2 8.4 16.1 2.6 1 1 1 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease Sec8_exocyst PF04048.9 gi|110667706|ref|YP_657517.1| - 0.036 13.7 16.4 0.038 13.6 8.8 2.5 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain UPF0242 PF06785.6 gi|110667706|ref|YP_657517.1| - 0.037 12.7 22.1 1.1 7.8 3.0 2.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) ALIX_LYPXL_bnd PF13949.1 gi|110667706|ref|YP_657517.1| - 0.049 12.6 24.2 0.11 11.4 12.9 1.8 1 1 1 2 2 2 0 ALIX V-shaped domain binding to HIV DUF2353 PF09789.4 gi|110667706|ref|YP_657517.1| - 0.054 12.7 23.5 0.15 11.2 9.2 2.0 1 1 1 2 2 2 0 Uncharacterized coiled-coil protein (DUF2353) Lectin_N PF03954.9 gi|110667706|ref|YP_657517.1| - 0.06 12.7 17.2 0.25 10.7 6.6 2.6 1 1 1 2 2 2 0 Hepatic lectin, N-terminal domain DUF342 PF03961.8 gi|110667706|ref|YP_657517.1| - 0.065 11.6 16.5 0.11 10.8 4.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF342) Sec2p PF06428.6 gi|110667706|ref|YP_657517.1| - 0.07 12.9 26.0 0.34 10.7 3.9 3.5 1 1 2 3 3 3 0 GDP/GTP exchange factor Sec2p Borrelia_P83 PF05262.6 gi|110667706|ref|YP_657517.1| - 0.071 11.3 15.1 0.086 11.0 10.5 1.0 1 0 0 1 1 1 0 Borrelia P83/100 protein Microtub_assoc PF07989.6 gi|110667706|ref|YP_657517.1| - 0.079 12.7 15.2 0.18 11.6 1.4 3.8 1 1 1 3 3 3 0 Microtubule associated GrpE PF01025.14 gi|110667706|ref|YP_657517.1| - 0.079 12.4 25.4 0.35 10.4 0.5 3.1 1 1 2 3 3 3 0 GrpE HisKA_3 PF07730.8 gi|110667706|ref|YP_657517.1| - 0.082 13.2 12.5 0.31 11.4 1.3 3.3 1 1 1 3 3 2 0 Histidine kinase Spectrin PF00435.16 gi|110667706|ref|YP_657517.1| - 0.088 13.1 21.4 2.2 8.5 7.1 3.0 1 1 1 2 2 2 0 Spectrin repeat Paramyx_P_V_C PF03210.8 gi|110667706|ref|YP_657517.1| - 0.092 12.6 2.2 0.37 10.6 0.0 2.6 1 1 2 3 3 2 0 Paramyxovirus P/V phosphoprotein C-terminal Spc24 PF08286.6 gi|110667706|ref|YP_657517.1| - 0.095 12.3 32.3 0.36 10.5 3.2 3.3 1 1 2 3 3 2 0 Spc24 subunit of Ndc80 Perilipin PF03036.11 gi|110667706|ref|YP_657517.1| - 0.11 11.2 11.9 0.14 11.0 8.3 1.1 1 0 0 1 1 1 0 Perilipin family Fmp27_WPPW PF10359.4 gi|110667706|ref|YP_657517.1| - 0.12 10.7 21.5 0.035 12.5 3.4 2.0 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain Kinetocho_Slk19 PF12709.2 gi|110667706|ref|YP_657517.1| - 0.13 12.3 23.6 0.89 9.6 2.7 4.7 1 1 3 4 4 3 0 Central kinetochore-associated DUF2681 PF10883.3 gi|110667706|ref|YP_657517.1| - 0.13 12.4 14.2 0.23 11.6 0.4 3.9 1 1 3 4 4 3 0 Protein of unknown function (DUF2681) DUF4618 PF15397.1 gi|110667706|ref|YP_657517.1| - 0.14 11.5 21.7 8.9 5.5 12.9 3.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) Tetraspannin PF00335.15 gi|110667706|ref|YP_657517.1| - 0.14 11.3 0.4 0.29 10.3 0.2 1.6 1 1 0 1 1 1 0 Tetraspanin family Halogen_Hydrol PF10112.4 gi|110667706|ref|YP_657517.1| - 0.16 11.3 4.8 0.26 10.6 0.0 2.3 1 1 1 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein YqgF PF14639.1 gi|110667706|ref|YP_657517.1| - 0.17 11.4 3.1 0.34 10.4 1.6 1.8 1 1 1 2 2 2 0 Holliday-junction resolvase-like of SPT6 Ax_dynein_light PF10211.4 gi|110667706|ref|YP_657517.1| - 0.18 11.6 24.2 4.6 7.0 4.9 3.2 1 1 2 3 3 3 0 Axonemal dynein light chain WD40_alt PF14077.1 gi|110667706|ref|YP_657517.1| - 0.19 11.3 7.6 2 8.1 0.2 3.8 1 1 3 4 4 3 0 Alternative WD40 repeat motif DASH_Dad1 PF08649.5 gi|110667706|ref|YP_657517.1| - 0.19 11.4 3.4 2.4 7.9 0.4 2.5 2 0 0 2 2 2 0 DASH complex subunit Dad1 THOC7 PF05615.8 gi|110667706|ref|YP_657517.1| - 0.2 11.9 22.1 0.6 10.3 3.1 3.0 1 1 2 3 3 3 0 Tho complex subunit 7 YscO PF07321.7 gi|110667706|ref|YP_657517.1| - 0.21 11.3 28.4 3.5 7.4 8.6 3.0 1 1 2 3 3 3 0 Type III secretion protein YscO zf-ZPR1 PF03367.8 gi|110667706|ref|YP_657517.1| - 0.22 10.6 12.2 0.33 10.1 4.6 2.7 1 1 2 3 3 3 0 ZPR1 zinc-finger domain DUF4446 PF14584.1 gi|110667706|ref|YP_657517.1| - 0.22 11.3 13.5 0.49 10.2 0.3 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) Bap31 PF05529.7 gi|110667706|ref|YP_657517.1| - 0.24 10.8 18.6 1.6 8.1 4.4 2.8 1 1 0 2 2 2 0 B-cell receptor-associated protein 31-like FH2 PF02181.18 gi|110667706|ref|YP_657517.1| - 0.25 10.2 13.5 0.46 9.3 3.8 2.2 1 1 1 2 2 2 0 Formin Homology 2 Domain V_ATPase_I PF01496.14 gi|110667706|ref|YP_657517.1| - 0.25 9.1 20.4 0.12 10.2 3.7 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Striatin PF08232.7 gi|110667706|ref|YP_657517.1| - 0.26 11.5 23.0 0.048 13.9 3.4 2.5 1 1 1 2 2 2 0 Striatin family HAP1_N PF04849.8 gi|110667706|ref|YP_657517.1| - 0.27 10.1 29.5 0.16 10.8 16.1 2.0 1 1 1 2 2 2 0 HAP1 N-terminal conserved region DUF1049 PF06305.6 gi|110667706|ref|YP_657517.1| - 0.27 10.7 0.0 0.27 10.7 0.0 4.6 1 1 4 5 5 3 0 Protein of unknown function (DUF1049) Jnk-SapK_ap_N PF09744.4 gi|110667706|ref|YP_657517.1| - 0.28 11.1 19.6 0.28 11.1 2.8 2.4 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 DUF3407 PF11887.3 gi|110667706|ref|YP_657517.1| - 0.29 10.3 6.8 0.38 9.9 4.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3407) Med9 PF07544.8 gi|110667706|ref|YP_657517.1| - 0.29 10.8 15.7 0.97 9.2 0.7 3.3 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 CENP-F_N PF10481.4 gi|110667706|ref|YP_657517.1| - 0.3 10.4 22.6 0.073 12.4 7.9 2.1 1 1 1 2 2 2 0 Cenp-F N-terminal domain DUF641 PF04859.7 gi|110667706|ref|YP_657517.1| - 0.32 10.7 16.4 0.77 9.5 4.6 2.7 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) DUF1640 PF07798.6 gi|110667706|ref|YP_657517.1| - 0.37 10.8 20.4 3 7.8 7.2 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) HCMV_UL139 PF12507.3 gi|110667706|ref|YP_657517.1| - 0.37 10.9 7.5 0.42 10.7 1.4 2.3 1 1 1 2 2 2 0 Human Cytomegalovirus UL139 protein KLRAQ PF10205.4 gi|110667706|ref|YP_657517.1| - 0.38 10.8 26.8 2.2 8.3 4.2 2.7 1 1 2 3 3 3 0 Predicted coiled-coil domain-containing protein Surfac_D-trimer PF09006.6 gi|110667706|ref|YP_657517.1| - 0.4 10.4 3.9 6.5 6.5 0.0 3.9 2 2 3 5 5 2 0 Lung surfactant protein D coiled-coil trimerisation Hemerythrin PF01814.18 gi|110667706|ref|YP_657517.1| - 0.41 10.8 4.9 30 4.7 3.4 2.9 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain LPP PF04728.8 gi|110667706|ref|YP_657517.1| - 0.42 10.4 16.8 0.53 10.1 1.0 4.2 1 1 4 5 5 5 0 Lipoprotein leucine-zipper DUF2130 PF09903.4 gi|110667706|ref|YP_657517.1| - 0.42 9.3 8.6 0.38 9.4 2.4 2.4 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2130) SpecificRecomb PF10136.4 gi|110667706|ref|YP_657517.1| - 0.45 8.4 4.5 0.54 8.2 3.1 1.1 1 0 0 1 1 1 0 Site-specific recombinase GLE1 PF07817.8 gi|110667706|ref|YP_657517.1| - 0.47 9.3 9.3 3.8 6.3 0.1 2.2 1 1 1 2 2 2 0 GLE1-like protein Cluap1 PF10234.4 gi|110667706|ref|YP_657517.1| - 0.52 9.4 20.9 0.82 8.8 3.4 2.3 1 1 1 2 2 2 0 Clusterin-associated protein-1 DUF848 PF05852.6 gi|110667706|ref|YP_657517.1| - 0.54 10.1 23.0 0.72 9.6 8.1 2.2 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) OmpH PF03938.9 gi|110667706|ref|YP_657517.1| - 0.54 10.1 27.8 6.4 6.6 19.3 2.2 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF2935 PF11155.3 gi|110667706|ref|YP_657517.1| - 0.55 10.3 8.2 4 7.5 0.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) Syntaxin PF00804.20 gi|110667706|ref|YP_657517.1| - 0.6 10.3 22.8 0.37 10.9 0.3 3.0 1 1 1 2 2 2 0 Syntaxin BicD PF09730.4 gi|110667706|ref|YP_657517.1| - 0.64 8.3 26.8 2.6 6.2 10.4 2.0 1 1 1 2 2 2 0 Microtubule-associated protein Bicaudal-D DUF2383 PF09537.5 gi|110667706|ref|YP_657517.1| - 0.66 10.2 11.2 0.82 9.9 2.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF2383) CALCOCO1 PF07888.6 gi|110667706|ref|YP_657517.1| - 0.73 8.0 24.0 4.9 5.3 16.6 1.9 1 1 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like Flagellin_C PF00700.16 gi|110667706|ref|YP_657517.1| - 0.78 9.9 20.8 1.9 8.6 2.2 4.0 1 1 3 4 4 4 0 Bacterial flagellin C-terminal helical region YlqD PF11068.3 gi|110667706|ref|YP_657517.1| - 0.84 9.6 24.8 1.6 8.7 3.4 3.1 1 1 2 3 3 3 0 YlqD protein TMCO5 PF14992.1 gi|110667706|ref|YP_657517.1| - 0.91 8.6 25.5 3.9 6.5 17.1 1.9 1 1 0 1 1 1 0 TMCO5 family DUF2203 PF09969.4 gi|110667706|ref|YP_657517.1| - 0.91 9.7 11.9 84 3.4 8.2 2.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) Phlebovirus_NSM PF07246.6 gi|110667706|ref|YP_657517.1| - 0.93 8.5 15.4 4.8 6.2 1.0 2.1 1 1 1 2 2 2 0 Phlebovirus nonstructural protein NS-M Med4 PF10018.4 gi|110667706|ref|YP_657517.1| - 0.98 8.7 21.0 0.79 9.0 1.2 3.0 1 1 2 3 3 3 0 Vitamin-D-receptor interacting Mediator subunit 4 zf-C4H2 PF10146.4 gi|110667706|ref|YP_657517.1| - 1.1 9.2 13.3 0.74 9.7 6.7 1.8 1 1 1 2 2 2 0 Zinc finger-containing protein FtsL PF04999.8 gi|110667706|ref|YP_657517.1| - 1.1 8.9 0.0 1.1 8.9 0.0 4.2 1 1 2 3 3 2 0 Cell division protein FtsL Pox_A_type_inc PF04508.7 gi|110667706|ref|YP_657517.1| - 1.2 9.1 14.3 0.81 9.6 0.4 5.2 3 2 2 5 5 4 0 Viral A-type inclusion protein repeat KxDL PF10241.4 gi|110667706|ref|YP_657517.1| - 1.2 9.0 16.5 1.1 9.2 0.3 3.7 1 1 1 3 3 3 0 Uncharacterized conserved protein Herpes_UL6 PF01763.11 gi|110667706|ref|YP_657517.1| - 1.4 7.0 18.8 0.48 8.5 5.8 2.1 1 1 1 2 2 2 0 Herpesvirus UL6 like DASH_Dam1 PF08653.5 gi|110667706|ref|YP_657517.1| - 1.4 8.7 13.4 2.2 8.1 0.4 4.3 1 1 1 4 4 4 0 DASH complex subunit Dam1 CCDC-167 PF15188.1 gi|110667706|ref|YP_657517.1| - 1.5 8.8 19.5 9.2e+03 -3.4 13.3 3.4 1 1 0 1 1 0 0 Coiled-coil domain-containing protein 167 Cep57_CLD PF14073.1 gi|110667706|ref|YP_657517.1| - 1.6 8.4 21.8 0.42 10.4 11.6 1.9 1 1 1 2 2 2 0 Centrosome localisation domain of Cep57 Neur_chan_memb PF02932.11 gi|110667706|ref|YP_657517.1| - 1.7 8.5 4.3 2 8.2 3.0 1.2 1 0 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region Fzo_mitofusin PF04799.8 gi|110667706|ref|YP_657517.1| - 1.7 8.0 20.8 3.7 6.8 5.1 3.0 1 1 2 3 3 3 0 fzo-like conserved region DMPK_coil PF08826.5 gi|110667706|ref|YP_657517.1| - 1.7 8.5 29.2 1.5 8.7 4.9 5.0 3 1 1 5 5 4 0 DMPK coiled coil domain like CorA PF01544.13 gi|110667706|ref|YP_657517.1| - 1.8 7.5 20.1 2.3 7.1 9.9 2.1 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Occludin_ELL PF07303.8 gi|110667706|ref|YP_657517.1| - 1.9 9.2 11.4 51 4.6 0.0 2.8 1 1 1 2 2 2 0 Occludin homology domain UPF0449 PF15136.1 gi|110667706|ref|YP_657517.1| - 1.9 8.7 23.1 0.99 9.6 0.5 4.5 1 1 3 4 4 4 0 Uncharacterised protein family UPF0449 DUF3847 PF12958.2 gi|110667706|ref|YP_657517.1| - 1.9 8.2 20.3 9.1 6.1 0.2 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF3847) Peptidase_S64 PF08192.6 gi|110667706|ref|YP_657517.1| - 2 6.6 10.1 2.2 6.4 7.0 1.0 1 0 0 1 1 1 0 Peptidase family S64 ATP-synt_B PF00430.13 gi|110667706|ref|YP_657517.1| - 2.1 8.1 20.8 6.2 6.6 13.5 2.3 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) DUF1875 PF08961.5 gi|110667706|ref|YP_657517.1| - 2.2 7.5 12.3 0.32 10.2 0.3 3.1 1 1 2 3 3 3 0 Domain of unknown function (DUF1875) Sipho_Gp157 PF05565.6 gi|110667706|ref|YP_657517.1| - 2.5 7.6 11.6 2.5 7.6 2.7 2.7 1 1 2 3 3 3 0 Siphovirus Gp157 DUF4337 PF14235.1 gi|110667706|ref|YP_657517.1| - 2.5 7.9 15.0 0.55 10.0 3.2 2.5 1 1 1 2 2 1 0 Domain of unknown function (DUF4337) FliD_N PF02465.13 gi|110667706|ref|YP_657517.1| - 2.5 8.5 16.9 49 4.3 4.2 2.9 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus DUF3393 PF11873.3 gi|110667706|ref|YP_657517.1| - 2.5 7.5 8.0 4.3 6.7 1.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3393) DUF4559 PF15112.1 gi|110667706|ref|YP_657517.1| - 2.6 7.1 17.4 8.3 5.4 11.9 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4559) DUF4398 PF14346.1 gi|110667706|ref|YP_657517.1| - 2.8 8.0 15.9 36 4.4 11.0 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4398) TATR PF03430.8 gi|110667706|ref|YP_657517.1| - 2.8 6.4 9.0 3.2 6.2 6.3 1.0 1 0 0 1 1 1 0 Trans-activating transcriptional regulator EAP30 PF04157.11 gi|110667706|ref|YP_657517.1| - 3 6.9 27.6 4.6 6.3 6.5 3.1 1 1 2 3 3 3 0 EAP30/Vps36 family Vps53_N PF04100.7 gi|110667706|ref|YP_657517.1| - 3.3 6.3 13.5 3.7 6.2 4.0 2.1 1 1 1 2 2 2 0 Vps53-like, N-terminal HlyD PF00529.15 gi|110667706|ref|YP_657517.1| - 4 6.6 30.5 8.3 5.6 17.5 2.0 1 1 1 2 2 2 0 HlyD family secretion protein Cortex-I_coil PF09304.5 gi|110667706|ref|YP_657517.1| - 4 7.5 26.6 12 5.9 6.0 2.7 1 1 1 2 2 2 0 Cortexillin I, coiled coil Golgin_A5 PF09787.4 gi|110667706|ref|YP_657517.1| - 4.2 5.7 24.4 3.1 6.1 8.9 2.1 1 1 1 2 2 2 0 Golgin subfamily A member 5 DUF1843 PF08898.5 gi|110667706|ref|YP_657517.1| - 4.3 7.4 16.1 5.2 7.1 0.2 4.3 1 1 3 4 4 4 0 Domain of unknown function (DUF1843) COX16 PF14138.1 gi|110667706|ref|YP_657517.1| - 4.7 7.4 10.2 6.7 6.9 0.3 2.9 1 1 1 2 2 2 0 Cytochrome c oxidase assembly protein COX16 PEP-utilisers_N PF05524.8 gi|110667706|ref|YP_657517.1| - 4.8 6.9 14.6 14 5.5 5.1 3.0 1 1 1 2 2 2 0 PEP-utilising enzyme, N-terminal DUF3186 PF11382.3 gi|110667706|ref|YP_657517.1| - 5 6.1 26.8 0.48 9.4 2.3 3.9 1 1 3 4 4 4 0 Protein of unknown function (DUF3186) DASH_Duo1 PF08651.5 gi|110667706|ref|YP_657517.1| - 5.3 6.6 17.0 0.31 10.6 1.1 3.7 3 1 1 4 4 3 0 DASH complex subunit Duo1 YPEB PF14620.1 gi|110667706|ref|YP_657517.1| - 5.5 5.8 17.9 2 7.3 4.6 2.0 1 1 1 2 2 2 0 YpeB sporulation End3 PF12761.2 gi|110667706|ref|YP_657517.1| - 6.5 6.3 25.5 0.99 9.0 2.9 2.8 1 1 0 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 Baculo_p24 PF05073.7 gi|110667706|ref|YP_657517.1| - 6.6 6.2 13.8 2.9 7.3 3.7 2.2 1 1 1 2 2 2 0 Baculovirus P24 capsid protein Tweety PF04906.8 gi|110667706|ref|YP_657517.1| - 6.7 5.0 9.9 8.1 4.7 3.1 2.0 1 1 1 2 2 2 0 Tweety bZIP_Maf PF03131.12 gi|110667706|ref|YP_657517.1| - 7.1 7.0 28.7 2.6 8.3 0.4 4.1 1 1 3 4 4 4 0 bZIP Maf transcription factor CENP-K PF11802.3 gi|110667706|ref|YP_657517.1| - 7.5 5.7 14.9 11 5.1 8.5 1.9 1 1 1 2 2 2 0 Centromere-associated protein K DUF4407 PF14362.1 gi|110667706|ref|YP_657517.1| - 7.7 5.3 23.6 7.4 5.4 7.2 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) DUF4472 PF14739.1 gi|110667706|ref|YP_657517.1| - 7.8 7.0 23.0 1.4 9.3 0.9 3.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4472) ATP-synt_DE PF00401.15 gi|110667706|ref|YP_657517.1| - 7.8 6.4 11.6 1.3e+02 2.5 0.5 2.9 1 1 1 2 2 2 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HAUS-augmin3 PF14932.1 gi|110667706|ref|YP_657517.1| - 8.6 5.4 25.6 5.1 6.1 15.5 1.9 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 CENP-H PF05837.7 gi|110667706|ref|YP_657517.1| - 10 6.3 23.2 0.51 10.5 2.0 3.1 1 1 2 3 3 3 0 Centromere protein H (CENP-H) VWA_2 PF13519.1 gi|110667707|ref|YP_657518.1| - 2.5e-31 109.1 6.1 5.1e-27 95.0 0.3 3.4 3 0 0 3 3 3 2 von Willebrand factor type A domain VWA PF00092.23 gi|110667707|ref|YP_657518.1| - 4.6e-18 65.5 0.8 2.7e-16 59.8 0.0 2.3 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|110667707|ref|YP_657518.1| - 5e-16 58.7 0.4 9.4e-15 54.6 0.1 2.4 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|110667707|ref|YP_657518.1| - 9.3e-10 38.0 0.1 3.5e-08 32.8 0.0 2.4 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein DUF1355 PF07090.6 gi|110667707|ref|YP_657518.1| - 1.4e-05 24.5 0.1 3e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1355) BatA PF07584.6 gi|110667707|ref|YP_657518.1| - 6.6 6.9 6.4 5.9 7.1 0.7 2.7 2 1 1 3 3 3 0 Aerotolerance regulator N-terminal BatA PF07584.6 gi|110667708|ref|YP_657519.1| - 3.2e-16 59.2 3.3 5.6e-16 58.5 2.3 1.4 1 0 0 1 1 1 1 Aerotolerance regulator N-terminal VWA_2 PF13519.1 gi|110667708|ref|YP_657519.1| - 3.6e-05 23.9 3.9 7.5e-05 22.8 2.7 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain HAD_2 PF13419.1 gi|110667709|ref|YP_657520.1| - 1.8e-24 86.8 0.3 2.2e-24 86.6 0.2 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|110667709|ref|YP_657520.1| - 0.0012 19.2 0.0 0.0026 18.1 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|110667709|ref|YP_657520.1| - 0.0029 17.8 0.0 0.0034 17.5 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase MTHFR PF02219.12 gi|110667710|ref|YP_657521.1| - 1.9e-14 53.4 0.0 3.8e-14 52.4 0.0 1.5 1 1 0 1 1 1 1 Methylenetetrahydrofolate reductase G_glu_transpept PF01019.16 gi|110667710|ref|YP_657521.1| - 0.05 12.0 0.0 0.071 11.5 0.0 1.1 1 0 0 1 1 1 0 Gamma-glutamyltranspeptidase DDHD PF02862.12 gi|110667711|ref|YP_657522.1| - 2 8.1 7.3 0.82 9.4 0.9 2.3 2 0 0 2 2 2 0 DDHD domain AstE_AspA PF04952.9 gi|110667712|ref|YP_657523.1| - 1.4e-36 125.8 0.0 1.9e-36 125.4 0.0 1.2 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.19 gi|110667712|ref|YP_657523.1| - 1.6e-05 24.6 0.4 4.3e-05 23.2 0.3 1.6 1 1 0 1 1 1 1 Zinc carboxypeptidase Creatininase PF02633.9 gi|110667713|ref|YP_657524.1| - 5.1e-70 235.2 2.3 5.8e-70 235.0 1.6 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Glyco_trans_4_4 PF13579.1 gi|110667713|ref|YP_657524.1| - 0.013 15.6 0.4 0.018 15.1 0.3 1.2 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain DAO PF01266.19 gi|110667714|ref|YP_657525.1| - 7.4e-66 222.4 0.2 1.3e-65 221.6 0.2 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase GCV_T PF01571.16 gi|110667714|ref|YP_657525.1| - 8.4e-63 211.5 0.0 1.7e-62 210.5 0.0 1.5 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|110667714|ref|YP_657525.1| - 5.8e-13 48.6 0.0 1.6e-12 47.2 0.0 1.8 2 0 0 2 2 1 1 Glycine cleavage T-protein C-terminal barrel domain SoxG PF04268.7 gi|110667714|ref|YP_657525.1| - 4.2e-07 29.9 0.0 1.4e-06 28.2 0.0 1.9 1 1 1 2 2 2 1 Sarcosine oxidase, gamma subunit family Pyr_redox_3 PF13738.1 gi|110667714|ref|YP_657525.1| - 1.1e-06 28.9 0.4 7.2e-05 22.9 0.3 2.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|110667714|ref|YP_657525.1| - 1.6e-05 23.9 0.2 3.5e-05 22.8 0.1 1.6 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|110667714|ref|YP_657525.1| - 2.2e-05 24.4 0.0 9e-05 22.4 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|110667714|ref|YP_657525.1| - 0.00031 21.0 0.3 0.0029 17.9 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|110667714|ref|YP_657525.1| - 0.0031 17.2 0.4 0.22 11.2 0.0 2.9 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox_2 PF07992.9 gi|110667714|ref|YP_657525.1| - 0.0052 16.6 0.1 0.078 12.8 0.0 2.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|110667714|ref|YP_657525.1| - 0.0088 15.8 0.2 0.022 14.6 0.1 1.6 1 0 0 1 1 1 1 ThiF family ApbA PF02558.11 gi|110667714|ref|YP_657525.1| - 0.016 14.6 0.1 0.03 13.7 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.13 gi|110667714|ref|YP_657525.1| - 0.026 14.5 0.1 0.069 13.1 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain HI0933_like PF03486.9 gi|110667714|ref|YP_657525.1| - 0.028 12.9 0.4 0.12 10.7 0.0 1.9 2 0 0 2 2 2 0 HI0933-like protein Lycopene_cycl PF05834.7 gi|110667714|ref|YP_657525.1| - 0.066 12.1 0.2 0.27 10.1 0.0 1.9 2 0 0 2 2 2 0 Lycopene cyclase protein GMC_oxred_N PF00732.14 gi|110667714|ref|YP_657525.1| - 0.083 12.0 0.0 0.18 10.9 0.0 1.5 1 0 0 1 1 1 0 GMC oxidoreductase GCV_T PF01571.16 gi|110667715|ref|YP_657526.1| - 2.7e-60 203.3 0.0 6.4e-60 202.1 0.0 1.7 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain DAO PF01266.19 gi|110667715|ref|YP_657526.1| - 2.4e-56 191.1 0.5 3.7e-56 190.5 0.3 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase GCV_T_C PF08669.6 gi|110667715|ref|YP_657526.1| - 3e-15 55.9 0.0 1.1e-14 54.1 0.0 2.0 2 0 0 2 2 2 1 Glycine cleavage T-protein C-terminal barrel domain Pyr_redox_3 PF13738.1 gi|110667715|ref|YP_657526.1| - 2.7e-07 30.8 0.2 3.4e-06 27.2 0.1 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|110667715|ref|YP_657526.1| - 8.9e-07 28.0 0.6 1.5e-05 24.0 0.4 2.4 1 1 0 1 1 1 1 FAD binding domain SoxG PF04268.7 gi|110667715|ref|YP_657526.1| - 1.7e-06 27.9 0.0 4.4e-05 23.3 0.0 2.4 2 0 0 2 2 2 1 Sarcosine oxidase, gamma subunit family NAD_binding_8 PF13450.1 gi|110667715|ref|YP_657526.1| - 6.6e-06 26.0 0.0 2.3e-05 24.2 0.0 2.0 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain ThiF PF00899.16 gi|110667715|ref|YP_657526.1| - 4.4e-05 23.3 0.3 8.5e-05 22.3 0.0 1.6 2 0 0 2 2 1 1 ThiF family Pyr_redox_2 PF07992.9 gi|110667715|ref|YP_657526.1| - 4.4e-05 23.4 0.1 0.0012 18.7 0.1 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|110667715|ref|YP_657526.1| - 0.00012 21.5 0.0 0.00024 20.5 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_9 PF13454.1 gi|110667715|ref|YP_657526.1| - 0.00013 21.7 0.3 0.15 11.8 0.0 2.8 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|110667715|ref|YP_657526.1| - 0.00015 22.1 0.6 0.00045 20.5 0.1 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|110667715|ref|YP_657526.1| - 0.00036 20.6 0.0 0.0012 19.0 0.0 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase HI0933_like PF03486.9 gi|110667715|ref|YP_657526.1| - 0.0037 15.8 0.1 1 7.7 0.0 2.3 2 0 0 2 2 2 2 HI0933-like protein GMC_oxred_N PF00732.14 gi|110667715|ref|YP_657526.1| - 0.012 14.8 0.0 0.023 13.8 0.0 1.5 1 0 0 1 1 1 0 GMC oxidoreductase TrkA_N PF02254.13 gi|110667715|ref|YP_657526.1| - 0.028 14.4 0.1 0.056 13.4 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain Lycopene_cycl PF05834.7 gi|110667715|ref|YP_657526.1| - 0.074 11.9 0.2 0.12 11.2 0.2 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_7 PF13241.1 gi|110667715|ref|YP_657526.1| - 0.15 12.3 0.0 0.32 11.2 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding PALP PF00291.20 gi|110667716|ref|YP_657527.1| - 3.4e-77 259.7 6.7 4.3e-77 259.3 4.6 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.20 gi|110667716|ref|YP_657527.1| - 9.7e-08 31.3 0.6 4e-07 29.3 0.4 2.0 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|110667716|ref|YP_657527.1| - 1e-06 28.9 2.1 3.6e-06 27.2 0.1 2.7 3 0 0 3 3 3 1 ACT domain Usp PF00582.21 gi|110667717|ref|YP_657528.1| - 3.1e-26 92.2 0.6 3.5e-26 92.0 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family Form_Nir_trans PF01226.12 gi|110667718|ref|YP_657529.1| - 0.013 14.3 1.5 0.013 14.3 1.0 1.0 1 0 0 1 1 1 0 Formate/nitrite transporter DUF1097 PF06496.6 gi|110667718|ref|YP_657529.1| - 0.044 13.5 4.1 0.047 13.5 2.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1097) DUF2721 PF11026.3 gi|110667718|ref|YP_657529.1| - 0.15 11.6 7.1 0.33 10.6 4.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2721) DUF4418 PF14387.1 gi|110667718|ref|YP_657529.1| - 1.5 8.5 4.6 1.7 8.3 3.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) IncA PF04156.9 gi|110667718|ref|YP_657529.1| - 1.9 8.0 5.9 1.8 8.0 4.1 1.1 1 0 0 1 1 1 0 IncA protein DUF4064 PF13273.1 gi|110667718|ref|YP_657529.1| - 2.6 8.1 9.1 3.1 7.9 6.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) BCCT PF02028.12 gi|110667719|ref|YP_657530.1| - 1.8e-180 600.3 50.8 2.1e-180 600.1 35.2 1.0 1 0 0 1 1 1 1 BCCT family transporter Pterin_bind PF00809.17 gi|110667721|ref|YP_657532.1| - 7.4e-71 237.8 0.1 2.1e-70 236.3 0.1 1.9 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.7 gi|110667721|ref|YP_657532.1| - 4.3e-13 49.7 0.1 9.9e-13 48.5 0.0 1.7 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|110667721|ref|YP_657532.1| - 1.3e-06 28.3 0.0 9.6e-06 25.5 0.0 2.5 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain FTHFS PF01268.14 gi|110667722|ref|YP_657533.1| - 3.4e-243 807.6 0.0 3.9e-243 807.5 0.0 1.0 1 0 0 1 1 1 1 Formate--tetrahydrofolate ligase Ribonuc_L-PSP PF01042.16 gi|110667723|ref|YP_657534.1| - 2.7e-36 123.9 0.1 3.1e-36 123.8 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.1 gi|110667723|ref|YP_657534.1| - 0.0053 16.6 0.0 0.007 16.3 0.0 1.2 1 0 0 1 1 1 1 YjgF/chorismate_mutase-like, putative endoribonuclease Gas_vesicle PF00741.13 gi|110667724|ref|YP_657535.1| - 1.8e-13 50.1 5.7 2.1e-13 49.9 4.0 1.1 1 0 0 1 1 1 1 Gas vesicle protein DUF70 PF01901.11 gi|110667724|ref|YP_657535.1| - 0.045 12.7 0.0 0.045 12.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function DUF70 GvpL_GvpF PF06386.6 gi|110667725|ref|YP_657536.1| - 4.6e-88 295.0 0.0 6.6e-88 294.5 0.0 1.2 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpL/GvpF GvpK PF05121.7 gi|110667726|ref|YP_657537.1| - 2.1e-28 97.9 6.1 3e-28 97.4 4.2 1.2 1 0 0 1 1 1 1 Gas vesicle protein K DUF948 PF06103.6 gi|110667726|ref|YP_657537.1| - 0.0031 17.3 0.3 0.0049 16.6 0.2 1.4 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF948) DUF3573 PF12097.3 gi|110667726|ref|YP_657537.1| - 0.0048 15.5 0.4 0.0058 15.3 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3573) TPD52 PF04201.10 gi|110667726|ref|YP_657537.1| - 0.018 14.7 1.4 0.022 14.4 1.0 1.2 1 0 0 1 1 1 0 Tumour protein D52 family Uds1 PF15456.1 gi|110667726|ref|YP_657537.1| - 0.019 14.9 1.9 0.025 14.5 1.3 1.2 1 0 0 1 1 1 0 Up-regulated During Septation DUF327 PF03885.8 gi|110667726|ref|YP_657537.1| - 0.025 14.4 0.5 0.031 14.1 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF327) Filament PF00038.16 gi|110667726|ref|YP_657537.1| - 0.03 13.8 5.1 0.037 13.4 3.6 1.1 1 0 0 1 1 1 0 Intermediate filament protein End3 PF12761.2 gi|110667726|ref|YP_657537.1| - 0.047 13.3 1.2 0.06 12.9 0.9 1.2 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 Syntaxin PF00804.20 gi|110667726|ref|YP_657537.1| - 0.054 13.6 1.2 0.08 13.1 0.8 1.4 1 0 0 1 1 1 0 Syntaxin FlxA PF14282.1 gi|110667726|ref|YP_657537.1| - 0.063 13.2 3.0 0.12 12.3 2.1 1.5 1 1 0 1 1 1 0 FlxA-like protein EMP24_GP25L PF01105.19 gi|110667726|ref|YP_657537.1| - 0.087 12.5 0.2 0.14 11.8 0.2 1.4 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD Val_tRNA-synt_C PF10458.4 gi|110667726|ref|YP_657537.1| - 0.11 12.6 0.5 0.22 11.6 0.4 1.5 1 0 0 1 1 1 0 Valyl tRNA synthetase tRNA binding arm CorA PF01544.13 gi|110667726|ref|YP_657537.1| - 0.13 11.3 1.2 0.18 10.8 0.8 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF1640 PF07798.6 gi|110667726|ref|YP_657537.1| - 0.42 10.6 4.3 0.73 9.8 3.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) APG6 PF04111.7 gi|110667726|ref|YP_657537.1| - 0.71 8.8 3.5 0.86 8.5 2.4 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 Gas_vesicle PF00741.13 gi|110667727|ref|YP_657538.1| - 8.4e-16 57.5 3.5 1.1e-15 57.1 2.4 1.2 1 0 0 1 1 1 1 Gas vesicle protein DUF883 PF05957.8 gi|110667728|ref|YP_657539.1| - 0.017 15.5 8.0 0.017 15.5 5.5 1.6 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) MCPVI PF02993.9 gi|110667728|ref|YP_657539.1| - 0.29 11.2 4.5 0.31 11.1 3.1 1.1 1 0 0 1 1 1 0 Minor capsid protein VI DUF1168 PF06658.7 gi|110667728|ref|YP_657539.1| - 0.74 9.3 15.5 0.97 8.9 10.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1168) SDH_alpha PF03313.10 gi|110667728|ref|YP_657539.1| - 0.85 8.6 3.7 1 8.3 2.5 1.0 1 0 0 1 1 1 0 Serine dehydratase alpha chain DUF4407 PF14362.1 gi|110667728|ref|YP_657539.1| - 1.1 8.1 6.3 1.1 8.1 4.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Mnd1 PF03962.10 gi|110667728|ref|YP_657539.1| - 1.3 8.6 7.5 1.5 8.4 5.2 1.2 1 0 0 1 1 1 0 Mnd1 family BBS2_C PF14782.1 gi|110667728|ref|YP_657539.1| - 1.8 7.0 6.3 2.1 6.8 4.4 1.0 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 2, C-terminal RF-1 PF00472.15 gi|110667728|ref|YP_657539.1| - 1.9 8.3 12.3 2.7 7.8 8.4 1.4 1 1 0 1 1 1 0 RF-1 domain Host_attach PF10116.4 gi|110667728|ref|YP_657539.1| - 2 8.6 7.7 2.7 8.2 5.3 1.3 1 0 0 1 1 1 0 Protein required for attachment to host cells SAPS PF04499.10 gi|110667728|ref|YP_657539.1| - 2.9 6.4 6.4 3.1 6.3 4.5 1.0 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein Borrelia_P83 PF05262.6 gi|110667728|ref|YP_657539.1| - 3.6 5.7 9.8 4 5.6 6.8 1.1 1 0 0 1 1 1 0 Borrelia P83/100 protein FAM60A PF15396.1 gi|110667728|ref|YP_657539.1| - 3.9 7.1 8.3 4.3 7.0 5.7 1.1 1 0 0 1 1 1 0 Protein Family FAM60A GvpH PF05455.6 gi|110667729|ref|YP_657540.1| - 7.2e-19 68.1 11.7 4.8e-18 65.4 6.6 2.4 1 1 1 2 2 2 1 GvpH HSP20 PF00011.16 gi|110667729|ref|YP_657540.1| - 0.074 12.9 0.2 0.15 11.9 0.1 1.6 1 0 0 1 1 1 0 Hsp20/alpha crystallin family GvpG PF05120.7 gi|110667730|ref|YP_657541.1| - 0.0038 16.9 4.3 0.0046 16.7 3.0 1.1 1 0 0 1 1 1 1 Gas vesicle protein G Orthopox_A49R PF06489.6 gi|110667730|ref|YP_657541.1| - 0.12 12.3 0.0 0.12 12.3 0.0 1.1 1 0 0 1 1 1 0 Orthopoxvirus A49R protein GvpL_GvpF PF06386.6 gi|110667731|ref|YP_657542.1| - 6.2e-54 183.2 0.1 7.5e-30 104.3 0.0 2.0 1 1 1 2 2 2 2 Gas vesicle synthesis protein GvpL/GvpF TarH PF02203.10 gi|110667731|ref|YP_657542.1| - 0.11 12.3 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Tar ligand binding domain homologue DUF2375 PF09558.5 gi|110667731|ref|YP_657542.1| - 0.13 12.1 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2375) CbiA PF01656.18 gi|110667732|ref|YP_657543.1| - 3e-28 98.5 0.0 4e-28 98.1 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|110667732|ref|YP_657543.1| - 1.7e-12 47.5 0.0 4e-11 43.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|110667732|ref|YP_657543.1| - 3.6e-10 39.3 0.6 1.4e-08 34.2 0.1 2.3 1 1 0 2 2 2 1 ATPase MipZ Fer4_NifH PF00142.13 gi|110667732|ref|YP_657543.1| - 1.2e-07 31.2 0.1 1.8e-06 27.3 0.0 2.0 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|110667732|ref|YP_657543.1| - 2.4e-05 23.5 0.7 5.6e-05 22.3 0.3 1.8 2 1 0 2 2 2 1 Anion-transporting ATPase YhjQ PF06564.7 gi|110667732|ref|YP_657543.1| - 0.00056 19.3 0.2 0.68 9.2 0.0 2.1 2 0 0 2 2 2 2 YhjQ protein VirC1 PF07015.6 gi|110667732|ref|YP_657543.1| - 0.0016 17.5 0.3 0.012 14.7 0.0 2.2 2 0 0 2 2 2 1 VirC1 protein AAA_25 PF13481.1 gi|110667732|ref|YP_657543.1| - 0.0057 16.0 0.0 0.0098 15.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|110667732|ref|YP_657543.1| - 0.031 14.0 0.3 0.075 12.7 0.2 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_10 PF12846.2 gi|110667732|ref|YP_657543.1| - 0.078 12.3 0.0 0.22 10.9 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain AAA_17 PF13207.1 gi|110667732|ref|YP_657543.1| - 0.13 13.0 0.2 0.35 11.6 0.1 2.0 1 1 0 1 1 1 0 AAA domain GvpO PF05800.6 gi|110667733|ref|YP_657544.1| - 9.8e-36 121.6 1.7 1.4e-35 121.1 1.2 1.2 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpO DUF2072 PF09845.4 gi|110667733|ref|YP_657544.1| - 0.51 10.2 5.0 1.3 8.9 1.6 2.3 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) AAA_5 PF07728.9 gi|110667734|ref|YP_657545.1| - 2.5e-17 62.9 0.0 2.5e-16 59.6 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|110667734|ref|YP_657545.1| - 1.2e-05 25.5 0.0 3.2e-05 24.1 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.6 gi|110667734|ref|YP_657545.1| - 0.00021 20.8 0.0 0.013 15.0 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|110667734|ref|YP_657545.1| - 0.00022 21.3 0.0 0.00057 20.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.1 gi|110667734|ref|YP_657545.1| - 0.00025 21.0 0.0 0.00081 19.4 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activat PF00158.21 gi|110667734|ref|YP_657545.1| - 0.00055 19.4 0.0 0.0067 15.9 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|110667734|ref|YP_657545.1| - 0.0013 18.4 0.0 0.0042 16.8 0.0 1.8 2 0 0 2 2 2 1 Archaeal ATPase IstB_IS21 PF01695.12 gi|110667734|ref|YP_657545.1| - 0.0015 18.0 0.0 0.0029 17.0 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein DNA_pol3_beta PF00712.14 gi|110667734|ref|YP_657545.1| - 0.002 17.9 0.2 0.011 15.6 0.0 2.2 3 0 0 3 3 2 1 DNA polymerase III beta subunit, N-terminal domain AAA_17 PF13207.1 gi|110667734|ref|YP_657545.1| - 0.0021 18.8 0.0 0.006 17.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|110667734|ref|YP_657545.1| - 0.0031 17.3 0.0 0.0083 16.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|110667734|ref|YP_657545.1| - 0.0033 17.3 0.0 0.0073 16.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain IPT PF01745.11 gi|110667734|ref|YP_657545.1| - 0.0062 15.7 0.0 0.011 14.8 0.0 1.4 1 0 0 1 1 1 1 Isopentenyl transferase ABC_tran PF00005.22 gi|110667734|ref|YP_657545.1| - 0.0075 16.5 0.0 0.024 14.9 0.0 2.0 2 0 0 2 2 2 1 ABC transporter AAA_16 PF13191.1 gi|110667734|ref|YP_657545.1| - 0.011 15.7 0.0 0.028 14.3 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain KaiC PF06745.8 gi|110667734|ref|YP_657545.1| - 0.012 14.7 0.1 1.6 7.8 0.0 2.4 2 0 0 2 2 2 0 KaiC NACHT PF05729.7 gi|110667734|ref|YP_657545.1| - 0.017 14.7 0.0 0.045 13.4 0.0 1.7 2 0 0 2 2 1 0 NACHT domain AAA_18 PF13238.1 gi|110667734|ref|YP_657545.1| - 0.026 14.8 0.0 0.026 14.8 0.0 2.0 2 0 0 2 2 1 0 AAA domain PhoH PF02562.11 gi|110667734|ref|YP_657545.1| - 0.027 13.7 0.0 0.053 12.7 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein RuvB_N PF05496.7 gi|110667734|ref|YP_657545.1| - 0.04 12.9 0.0 0.32 9.9 0.0 2.3 2 1 1 3 3 3 0 Holliday junction DNA helicase ruvB N-terminus AAA_25 PF13481.1 gi|110667734|ref|YP_657545.1| - 0.047 13.0 0.0 0.12 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|110667734|ref|YP_657545.1| - 0.049 13.1 0.0 0.07 12.6 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_28 PF13521.1 gi|110667734|ref|YP_657545.1| - 0.057 13.3 0.0 0.21 11.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.2 gi|110667734|ref|YP_657545.1| - 0.13 11.2 0.0 0.21 10.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region D3 Halo_GVPC PF05465.8 gi|110667735|ref|YP_657546.1| - 5.2e-40 134.5 94.3 9.9e-11 41.2 3.0 8.4 8 0 0 8 8 8 6 Halobacterial gas vesicle protein C (GVPC) repeat ROS_MUCR PF05443.6 gi|110667735|ref|YP_657546.1| - 3.4e-05 23.6 2.1 0.00017 21.4 0.6 2.9 2 1 1 3 3 3 1 ROS/MUCR transcriptional regulator protein LOH1CR12 PF10158.4 gi|110667735|ref|YP_657546.1| - 0.0017 18.1 2.2 0.96 9.2 0.1 3.8 1 1 4 5 5 5 1 Tumour suppressor protein IncA PF04156.9 gi|110667735|ref|YP_657546.1| - 0.0032 17.0 2.0 1 8.9 0.3 3.2 1 1 2 3 3 3 2 IncA protein Baculo_PEP_C PF04513.7 gi|110667735|ref|YP_657546.1| - 0.018 14.8 1.0 0.65 9.8 0.7 2.8 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2872 PF11071.3 gi|110667735|ref|YP_657546.1| - 0.026 14.3 4.9 0.41 10.5 0.2 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2872) CCP_MauG PF03150.9 gi|110667735|ref|YP_657546.1| - 0.029 14.6 14.3 2.2 8.5 0.7 3.5 2 1 0 2 2 2 0 Di-haem cytochrome c peroxidase MutS_III PF05192.13 gi|110667735|ref|YP_657546.1| - 0.05 13.3 3.8 0.086 12.6 2.7 1.5 1 0 0 1 1 1 0 MutS domain III DUF3782 PF12644.2 gi|110667735|ref|YP_657546.1| - 0.076 12.8 0.5 0.36 10.6 0.4 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3782) NPV_P10 PF05531.7 gi|110667735|ref|YP_657546.1| - 0.12 12.6 6.4 18 5.6 3.1 3.7 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein PilJ PF13675.1 gi|110667735|ref|YP_657546.1| - 0.5 10.7 8.1 8.9 6.6 1.0 3.6 1 1 3 4 4 4 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF1033 PF06279.6 gi|110667735|ref|YP_657546.1| - 1.9 8.3 12.7 4 7.2 0.1 4.3 1 1 2 4 4 4 0 Protein of unknown function (DUF1033) Gas_vesicle PF00741.13 gi|110667736|ref|YP_657547.1| - 6.1e-16 58.0 6.4 7.9e-16 57.6 4.4 1.2 1 0 0 1 1 1 1 Gas vesicle protein GATase PF00117.23 gi|110667737|ref|YP_657548.1| - 1.1e-48 165.2 0.0 1.2e-48 165.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|110667737|ref|YP_657548.1| - 9.4e-08 31.7 0.3 2.2e-07 30.5 0.2 1.6 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.13 gi|110667738|ref|YP_657549.1| - 2e-97 325.5 0.0 2.7e-97 325.0 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|110667738|ref|YP_657549.1| - 1.1e-14 54.6 0.0 3.9e-14 52.8 0.0 1.9 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region Hexapep PF00132.19 gi|110667739|ref|YP_657550.1| - 9.4e-13 47.0 6.9 2e-08 33.3 1.9 3.4 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|110667739|ref|YP_657550.1| - 9.4e-05 21.8 2.7 0.0026 17.2 0.6 2.8 2 1 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.9 gi|110667739|ref|YP_657550.1| - 0.00013 22.1 0.0 0.00023 21.3 0.0 1.3 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal ABC_membrane PF00664.18 gi|110667740|ref|YP_657551.1| - 1.4e-36 126.3 4.1 1.8e-36 125.9 2.9 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.22 gi|110667740|ref|YP_657551.1| - 1.4e-34 119.3 0.0 2.5e-34 118.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|110667740|ref|YP_657551.1| - 4.8e-05 22.6 0.0 0.00015 21.1 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.7 gi|110667740|ref|YP_657551.1| - 0.00014 21.0 0.0 0.00035 19.7 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_17 PF13207.1 gi|110667740|ref|YP_657551.1| - 0.00019 22.2 0.3 0.00071 20.3 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|110667740|ref|YP_657551.1| - 0.0029 17.6 0.0 0.16 11.8 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|110667740|ref|YP_657551.1| - 0.0094 15.3 1.2 0.094 12.1 0.0 2.8 3 0 0 3 3 3 1 AAA domain AAA_29 PF13555.1 gi|110667740|ref|YP_657551.1| - 0.019 14.4 0.2 0.048 13.1 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|110667740|ref|YP_657551.1| - 0.03 13.5 0.0 0.054 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 APS_kinase PF01583.15 gi|110667740|ref|YP_657551.1| - 0.031 13.9 0.0 0.071 12.7 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase KAP_NTPase PF07693.9 gi|110667740|ref|YP_657551.1| - 0.035 13.0 0.0 0.074 12.0 0.0 1.6 2 0 0 2 2 2 0 KAP family P-loop domain AAA_22 PF13401.1 gi|110667740|ref|YP_657551.1| - 0.046 13.8 0.5 0.95 9.6 0.4 2.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|110667740|ref|YP_657551.1| - 0.067 13.3 0.1 1.5 9.0 0.1 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|110667740|ref|YP_657551.1| - 0.068 13.4 0.1 0.3 11.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|110667740|ref|YP_657551.1| - 0.92 9.4 8.5 0.34 10.8 2.2 2.9 3 1 0 3 3 3 0 AAA ATPase domain PAS_9 PF13426.1 gi|110667741|ref|YP_657552.1| - 5.5e-13 49.1 0.0 1.6e-12 47.6 0.0 1.7 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|110667741|ref|YP_657552.1| - 0.00078 19.2 0.0 0.0019 17.9 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|110667741|ref|YP_657552.1| - 0.0015 18.5 0.0 0.0023 17.9 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|110667741|ref|YP_657552.1| - 0.003 17.3 0.0 0.0081 15.9 0.0 1.8 1 0 0 1 1 1 1 PAS domain DUF1819 PF08849.6 gi|110667741|ref|YP_657552.1| - 0.0045 16.4 0.0 0.0068 15.8 0.0 1.2 1 0 0 1 1 1 1 Putative inner membrane protein (DUF1819) PAS_3 PF08447.6 gi|110667741|ref|YP_657552.1| - 0.036 14.1 0.1 0.31 11.1 0.0 2.3 2 1 0 2 2 2 0 PAS fold TetR PF13972.1 gi|110667741|ref|YP_657552.1| - 0.14 11.5 0.4 0.89 8.9 0.1 2.1 2 0 0 2 2 2 0 Bacterial transcriptional repressor Methyltransf_11 PF08241.7 gi|110667742|ref|YP_657553.1| - 3.2e-09 37.1 0.0 5.6e-09 36.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|110667742|ref|YP_657553.1| - 0.00028 20.6 0.0 0.00034 20.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|110667742|ref|YP_657553.1| - 0.0012 19.2 0.0 0.0019 18.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|110667742|ref|YP_657553.1| - 0.013 15.8 0.0 0.032 14.5 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain MetW PF07021.7 gi|110667742|ref|YP_657553.1| - 0.023 14.0 0.0 0.031 13.6 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW N6_N4_Mtase PF01555.13 gi|110667742|ref|YP_657553.1| - 0.087 12.2 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 DNA methylase Methyltransf_31 PF13847.1 gi|110667742|ref|YP_657553.1| - 0.091 12.3 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF21 PF01595.15 gi|110667744|ref|YP_657555.1| - 0.026 13.8 0.8 0.029 13.6 0.6 1.0 1 0 0 1 1 1 0 Domain of unknown function DUF21 Phage_holin PF04688.8 gi|110667744|ref|YP_657555.1| - 0.046 13.2 0.7 0.046 13.2 0.5 1.5 2 0 0 2 2 2 0 Phage lysis protein, holin ABC2_membrane_2 PF12679.2 gi|110667744|ref|YP_657555.1| - 0.32 9.8 2.0 0.36 9.6 1.4 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein Methyltransf_11 PF08241.7 gi|110667746|ref|YP_657557.1| - 2.3e-15 56.8 0.0 4e-15 56.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|110667746|ref|YP_657557.1| - 2.3e-10 40.2 0.0 4.5e-10 39.2 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|110667746|ref|YP_657557.1| - 1.8e-09 37.5 0.0 2.6e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|110667746|ref|YP_657557.1| - 1.9e-08 34.6 0.0 6.3e-08 32.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|110667746|ref|YP_657557.1| - 6.9e-08 33.0 0.0 1.3e-07 32.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|110667746|ref|YP_657557.1| - 1.3e-07 31.0 0.0 4.5e-07 29.2 0.0 1.8 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|110667746|ref|YP_657557.1| - 2.3e-06 27.9 0.0 6.5e-06 26.5 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain CMAS PF02353.15 gi|110667746|ref|YP_657557.1| - 4.6e-05 22.6 0.0 6.6e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.10 gi|110667746|ref|YP_657557.1| - 0.00093 18.8 0.0 0.0017 18.0 0.0 1.4 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_26 PF13659.1 gi|110667746|ref|YP_657557.1| - 0.0013 18.7 0.1 0.0025 17.8 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|110667746|ref|YP_657557.1| - 0.0039 15.9 0.0 0.0055 15.4 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.7 gi|110667746|ref|YP_657557.1| - 0.043 13.1 0.1 0.066 12.5 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW MTS PF05175.9 gi|110667746|ref|YP_657557.1| - 0.13 11.6 0.1 0.23 10.8 0.1 1.5 1 1 0 1 1 1 0 Methyltransferase small domain DJ-1_PfpI PF01965.19 gi|110667747|ref|YP_657558.1| - 1.3e-18 66.9 0.2 3.1e-18 65.6 0.1 1.7 1 1 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|110667747|ref|YP_657558.1| - 0.038 13.2 0.1 0.2 10.9 0.0 2.0 2 0 0 2 2 2 0 Putative amidotransferase ThuA PF06283.6 gi|110667747|ref|YP_657558.1| - 0.065 12.9 0.0 0.09 12.4 0.0 1.2 1 0 0 1 1 1 0 Trehalose utilisation Nitro_FeMo-Co PF02579.12 gi|110667747|ref|YP_657558.1| - 0.082 12.9 0.0 0.79 9.8 0.0 2.4 3 0 0 3 3 3 0 Dinitrogenase iron-molybdenum cofactor GATase_3 PF07685.9 gi|110667747|ref|YP_657558.1| - 0.12 11.9 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Amino_oxidase PF01593.19 gi|110667748|ref|YP_657559.1| - 5.4e-26 91.6 0.3 2.3e-25 89.5 0.2 2.0 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|110667748|ref|YP_657559.1| - 1.3e-16 60.3 0.1 3.8e-16 58.8 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|110667748|ref|YP_657559.1| - 1.5e-15 57.0 4.1 2.3e-14 53.1 2.8 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|110667748|ref|YP_657559.1| - 1.7e-09 37.9 1.3 2.3e-07 31.1 0.2 2.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|110667748|ref|YP_657559.1| - 1.9e-06 28.1 0.1 0.0033 17.5 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|110667748|ref|YP_657559.1| - 5.5e-06 25.6 0.2 1e-05 24.8 0.2 1.4 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|110667748|ref|YP_657559.1| - 1.2e-05 24.5 0.1 2.1e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.9 gi|110667748|ref|YP_657559.1| - 2e-05 23.2 0.1 0.0041 15.6 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.9 gi|110667748|ref|YP_657559.1| - 0.00016 21.6 0.0 0.0015 18.4 0.1 2.1 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|110667748|ref|YP_657559.1| - 0.00024 20.0 0.5 0.00055 18.8 0.3 1.6 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|110667748|ref|YP_657559.1| - 0.00046 19.3 0.0 0.00066 18.8 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|110667748|ref|YP_657559.1| - 0.011 14.5 0.6 0.02 13.7 0.4 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A Strep_67kDa_ant PF06100.6 gi|110667748|ref|YP_657559.1| - 0.038 12.3 0.0 0.061 11.6 0.0 1.3 1 0 0 1 1 1 0 Streptococcal 67 kDa myosin-cross-reactive antigen like family NAD_binding_9 PF13454.1 gi|110667748|ref|YP_657559.1| - 0.42 10.3 3.0 0.43 10.3 0.2 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding TK PF00265.13 gi|110667749|ref|YP_657560.1| - 2.3e-47 160.8 0.0 3.9e-31 107.9 0.0 2.0 1 1 1 2 2 2 2 Thymidine kinase Helicase_RecD PF05127.9 gi|110667749|ref|YP_657560.1| - 0.11 12.1 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Helicase Yip1 PF04893.12 gi|110667750|ref|YP_657561.1| - 1.5e-16 60.3 17.1 1.9e-16 60.0 11.8 1.1 1 0 0 1 1 1 1 Yip1 domain Kei1 PF08552.6 gi|110667750|ref|YP_657561.1| - 3.6 7.2 7.2 1.9 8.0 0.4 2.1 2 0 0 2 2 2 0 Inositolphosphorylceramide synthase subunit Kei1 tRNA_anti-codon PF01336.20 gi|110667751|ref|YP_657562.1| - 4.1e-11 42.5 0.1 8e-11 41.6 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|110667751|ref|YP_657562.1| - 2.7e-07 30.6 0.0 1.1e-06 28.6 0.0 2.1 1 0 0 1 1 1 1 S1 RNA binding domain tRNA_anti_2 PF13742.1 gi|110667751|ref|YP_657562.1| - 0.0084 15.9 0.0 0.018 14.8 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Macoilin PF09726.4 gi|110667751|ref|YP_657562.1| - 1.8 6.7 5.9 2.4 6.3 4.1 1.1 1 0 0 1 1 1 0 Transmembrane protein Radical_SAM PF04055.16 gi|110667752|ref|YP_657563.1| - 8.2e-24 84.6 0.0 1.5e-23 83.7 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|110667752|ref|YP_657563.1| - 8.6e-08 32.1 1.3 2.2e-07 30.8 0.4 2.1 2 1 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|110667752|ref|YP_657563.1| - 0.014 15.5 0.4 0.053 13.6 0.1 2.2 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|110667753|ref|YP_657564.1| - 3.9e-11 42.8 0.0 9.2e-11 41.6 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|110667753|ref|YP_657564.1| - 2.8e-08 33.6 0.0 4.4e-05 23.3 0.0 2.1 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|110667753|ref|YP_657564.1| - 5.8e-08 32.7 0.0 5.3e-07 29.7 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|110667753|ref|YP_657564.1| - 0.00042 20.4 0.1 0.0019 18.3 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain MDM1 PF15501.1 gi|110667753|ref|YP_657564.1| - 0.0063 15.5 0.1 0.008 15.1 0.1 1.0 1 0 0 1 1 1 1 Nuclear protein MDM1 FR47 PF08445.5 gi|110667753|ref|YP_657564.1| - 0.0067 16.1 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Autoind_synth PF00765.12 gi|110667753|ref|YP_657564.1| - 0.014 14.5 0.0 0.024 13.8 0.0 1.3 1 0 0 1 1 1 0 Autoinducer synthetase Acetyltransf_CG PF14542.1 gi|110667753|ref|YP_657564.1| - 0.064 13.1 0.1 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Orthopox_A36R PF05950.6 gi|110667753|ref|YP_657564.1| - 0.51 10.2 0.0 0.51 10.2 0.0 2.4 1 1 0 2 2 2 0 Orthopoxvirus A36R protein BNIP2 PF12496.3 gi|110667753|ref|YP_657564.1| - 8.8 6.5 9.6 9.3 6.4 5.8 1.6 1 1 1 2 2 2 0 Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2 DUF3846 PF12957.2 gi|110667754|ref|YP_657565.1| - 0.039 13.6 0.2 0.14 11.9 0.0 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF3846) DUF2140 PF09911.4 gi|110667754|ref|YP_657565.1| - 0.41 9.8 4.5 0.65 9.1 3.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2140) ATG2_CAD PF13329.1 gi|110667754|ref|YP_657565.1| - 0.52 9.8 5.8 0.42 10.1 2.7 1.7 2 0 0 2 2 2 0 Autophagy-related protein 2 CAD motif TFIIA PF03153.8 gi|110667754|ref|YP_657565.1| - 2.9 7.7 17.2 3.4 7.4 11.9 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit FbpA PF05833.6 gi|110667755|ref|YP_657566.1| - 2e-98 329.9 0.7 2.5e-98 329.5 0.5 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|110667755|ref|YP_657566.1| - 1.4e-25 88.9 0.0 2.7e-25 88.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF814) eRF1_1 PF03463.10 gi|110667756|ref|YP_657567.1| - 2.2e-29 101.7 0.1 3.7e-29 100.9 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|110667756|ref|YP_657567.1| - 6.8e-24 84.3 1.0 4.3e-23 81.7 0.0 2.6 3 0 0 3 3 3 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|110667756|ref|YP_657567.1| - 5.1e-19 68.9 0.1 9e-19 68.1 0.1 1.4 1 0 0 1 1 1 1 eRF1 domain 2 Glyco_hydro_3_C PF01915.17 gi|110667756|ref|YP_657567.1| - 0.025 14.1 2.8 0.062 12.8 1.3 2.0 2 1 1 3 3 3 0 Glycosyl hydrolase family 3 C-terminal domain OCD_Mu_crystall PF02423.10 gi|110667757|ref|YP_657568.1| - 9.3e-09 34.4 0.1 9.3e-09 34.4 0.0 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family IncA PF04156.9 gi|110667758|ref|YP_657569.1| - 0.034 13.7 0.2 0.038 13.5 0.2 1.0 1 0 0 1 1 1 0 IncA protein PetG PF02529.10 gi|110667758|ref|YP_657569.1| - 0.19 11.2 0.8 0.47 10.0 0.5 1.6 1 0 0 1 1 1 0 Cytochrome B6-F complex subunit 5 Creatininase PF02633.9 gi|110667759|ref|YP_657570.1| - 3.6e-68 229.1 0.0 4e-68 229.0 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Thioredoxin_4 PF13462.1 gi|110667760|ref|YP_657571.1| - 1.4e-32 112.9 0.0 1.6e-32 112.7 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|110667760|ref|YP_657571.1| - 8.1e-07 29.2 0.1 3.8e-06 27.0 0.1 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.15 gi|110667760|ref|YP_657571.1| - 2.8e-05 23.7 1.5 0.06 12.9 0.3 2.1 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_3 PF13192.1 gi|110667760|ref|YP_657571.1| - 0.042 13.6 0.0 0.87 9.4 0.0 2.3 2 0 0 2 2 2 0 Thioredoxin domain Ribosomal_L21e PF01157.13 gi|110667761|ref|YP_657572.1| - 0.0094 15.7 0.1 0.019 14.7 0.1 1.5 1 1 0 1 1 1 1 Ribosomal protein L21e DUF1918 PF08940.6 gi|110667761|ref|YP_657572.1| - 0.048 13.0 0.1 0.059 12.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1918) NifZ PF04319.8 gi|110667761|ref|YP_657572.1| - 0.052 12.9 0.0 0.058 12.7 0.0 1.2 1 0 0 1 1 1 0 NifZ domain eIF-1a PF01176.14 gi|110667761|ref|YP_657572.1| - 0.054 12.9 0.0 0.11 11.9 0.0 1.5 1 1 0 1 1 1 0 Translation initiation factor 1A / IF-1 RNA_binding PF01877.12 gi|110667762|ref|YP_657573.1| - 3.7e-28 97.9 0.1 4.7e-28 97.6 0.1 1.1 1 0 0 1 1 1 1 RNA binding AhpC-TSA PF00578.16 gi|110667763|ref|YP_657574.1| - 1.3e-13 50.7 0.0 1.7e-13 50.3 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|110667763|ref|YP_657574.1| - 9.4e-10 38.2 0.0 1.3e-09 37.7 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.1 gi|110667763|ref|YP_657574.1| - 0.00064 19.8 0.0 0.00089 19.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|110667763|ref|YP_657574.1| - 0.0043 17.1 0.0 0.0076 16.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like HSP20 PF00011.16 gi|110667764|ref|YP_657575.1| - 1.2e-21 76.4 0.1 1.6e-21 76.0 0.1 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family DUF4097 PF13349.1 gi|110667764|ref|YP_657575.1| - 0.0012 18.4 0.2 0.0014 18.2 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4097) CS PF04969.11 gi|110667764|ref|YP_657575.1| - 0.0094 16.4 0.0 0.029 14.9 0.0 1.9 1 1 0 1 1 1 1 CS domain GvpH PF05455.6 gi|110667764|ref|YP_657575.1| - 0.028 14.0 0.4 0.054 13.1 0.2 1.7 1 1 0 1 1 1 0 GvpH PIH1 PF08190.7 gi|110667764|ref|YP_657575.1| - 0.044 13.2 0.0 0.051 13.0 0.0 1.2 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 AsnC_trans_reg PF01037.16 gi|110667765|ref|YP_657576.1| - 2.2e-15 56.0 0.2 3.6e-15 55.4 0.1 1.3 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|110667765|ref|YP_657576.1| - 5e-05 22.7 1.7 7.9e-05 22.1 0.3 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|110667765|ref|YP_657576.1| - 5.9e-05 22.3 0.0 0.00012 21.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|110667765|ref|YP_657576.1| - 9.4e-05 22.0 0.1 0.0002 20.9 0.1 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|110667765|ref|YP_657576.1| - 0.0014 18.2 0.0 0.0033 17.0 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|110667765|ref|YP_657576.1| - 0.0018 17.9 0.0 0.0042 16.7 0.0 1.6 1 0 0 1 1 1 1 MarR family FeoC PF09012.5 gi|110667765|ref|YP_657576.1| - 0.0023 17.6 0.0 0.0049 16.5 0.0 1.5 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_23 PF13384.1 gi|110667765|ref|YP_657576.1| - 0.0027 17.2 0.0 0.0075 15.8 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.1 gi|110667765|ref|YP_657576.1| - 0.0031 17.0 0.1 0.2 11.2 0.0 2.6 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|110667765|ref|YP_657576.1| - 0.0058 16.2 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|110667765|ref|YP_657576.1| - 0.01 15.4 0.0 0.024 14.2 0.0 1.6 2 0 0 2 2 2 0 HTH domain HTH_Tnp_ISL3 PF13542.1 gi|110667765|ref|YP_657576.1| - 0.013 14.6 0.0 0.033 13.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_Crp_2 PF13545.1 gi|110667765|ref|YP_657576.1| - 0.02 14.6 0.0 0.041 13.6 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|110667765|ref|YP_657576.1| - 0.022 14.7 0.0 0.049 13.5 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.2 gi|110667765|ref|YP_657576.1| - 0.035 13.9 0.1 0.062 13.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain RPA_C PF08784.6 gi|110667765|ref|YP_657576.1| - 0.064 13.6 0.0 0.19 12.1 0.0 1.8 2 0 0 2 2 2 0 Replication protein A C terminal DUF742 PF05331.6 gi|110667765|ref|YP_657576.1| - 0.07 12.7 0.1 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_29 PF13551.1 gi|110667765|ref|YP_657576.1| - 0.087 12.9 0.0 0.19 11.9 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn helix HTH_13 PF11972.3 gi|110667765|ref|YP_657576.1| - 0.11 12.3 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_27 PF13463.1 gi|110667765|ref|YP_657576.1| - 0.12 12.7 0.1 0.36 11.1 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|110667765|ref|YP_657576.1| - 0.12 12.3 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Aminotran_1_2 PF00155.16 gi|110667766|ref|YP_657577.1| - 2.7e-70 237.1 0.0 3.1e-70 236.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|110667766|ref|YP_657577.1| - 1.8e-06 27.3 0.0 3e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|110667766|ref|YP_657577.1| - 4e-05 22.5 0.0 0.0002 20.2 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|110667766|ref|YP_657577.1| - 0.0019 17.3 0.1 0.0029 16.7 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family CARDB PF07705.6 gi|110667767|ref|YP_657578.1| - 1.1e-10 41.4 17.0 0.00012 22.0 0.3 4.3 4 0 0 4 4 4 4 CARDB Transglut_C PF00927.17 gi|110667767|ref|YP_657578.1| - 0.0034 17.4 0.4 0.038 14.0 0.0 2.7 3 1 0 3 3 3 1 Transglutaminase family, C-terminal ig like domain ABC_tran PF00005.22 gi|110667768|ref|YP_657579.1| - 4.2e-34 117.7 0.0 6.2e-34 117.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110667768|ref|YP_657579.1| - 1.5e-10 41.5 0.0 1.7e-05 24.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|110667768|ref|YP_657579.1| - 1.3e-06 27.8 0.1 0.004 16.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|110667768|ref|YP_657579.1| - 7.8e-06 26.0 0.8 4.4e-05 23.6 0.5 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|110667768|ref|YP_657579.1| - 3e-05 23.4 0.2 5.1e-05 22.7 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|110667768|ref|YP_657579.1| - 0.00035 19.8 0.0 0.00056 19.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|110667768|ref|YP_657579.1| - 0.00075 19.3 0.3 0.0035 17.2 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|110667768|ref|YP_657579.1| - 0.0016 18.4 0.2 0.0025 17.8 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|110667768|ref|YP_657579.1| - 0.0038 16.7 1.9 0.016 14.6 0.9 2.2 1 1 1 2 2 2 1 AAA-like domain AAA_23 PF13476.1 gi|110667768|ref|YP_657579.1| - 0.0038 17.5 0.0 0.0047 17.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|110667768|ref|YP_657579.1| - 0.0049 16.4 0.2 0.076 12.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|110667768|ref|YP_657579.1| - 0.0051 16.2 0.0 0.089 12.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|110667768|ref|YP_657579.1| - 0.0061 17.3 0.5 0.011 16.5 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|110667768|ref|YP_657579.1| - 0.016 14.2 0.0 2.4 7.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_14 PF13173.1 gi|110667768|ref|YP_657579.1| - 0.03 14.2 0.0 0.088 12.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|110667768|ref|YP_657579.1| - 0.039 13.3 0.1 0.089 12.2 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein T2SE PF00437.15 gi|110667768|ref|YP_657579.1| - 0.04 12.8 0.0 0.066 12.0 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein MMR_HSR1 PF01926.18 gi|110667768|ref|YP_657579.1| - 0.058 13.3 0.3 0.15 12.0 0.2 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase ArgK PF03308.11 gi|110667768|ref|YP_657579.1| - 0.073 11.8 0.1 0.12 11.1 0.1 1.3 1 0 0 1 1 1 0 ArgK protein MobB PF03205.9 gi|110667768|ref|YP_657579.1| - 0.084 12.5 0.1 0.21 11.2 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|110667768|ref|YP_657579.1| - 0.11 12.2 0.1 0.33 10.7 0.0 1.8 2 0 0 2 2 1 0 Part of AAA domain SbcCD_C PF13558.1 gi|110667768|ref|YP_657579.1| - 0.12 12.2 0.0 1.1 9.1 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.1 gi|110667768|ref|YP_657579.1| - 0.14 12.5 0.8 0.26 11.6 0.6 1.8 1 1 0 1 1 1 0 AAA domain G-alpha PF00503.15 gi|110667768|ref|YP_657579.1| - 0.15 10.7 0.0 0.15 10.7 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA PF00004.24 gi|110667768|ref|YP_657579.1| - 0.18 12.0 0.6 23 5.2 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MacB_PCD PF12704.2 gi|110667769|ref|YP_657580.1| - 1.8e-26 93.1 4.5 1.8e-26 93.1 3.1 2.8 2 1 1 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|110667769|ref|YP_657580.1| - 1.3e-19 70.0 13.5 8.8e-19 67.4 7.2 2.2 2 0 0 2 2 2 1 FtsX-like permease family DUF4131 PF13567.1 gi|110667769|ref|YP_657580.1| - 0.018 14.4 0.0 0.018 14.4 0.0 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) TarH PF02203.10 gi|110667769|ref|YP_657580.1| - 0.019 14.8 0.2 0.04 13.7 0.1 1.6 1 0 0 1 1 1 0 Tar ligand binding domain homologue GSDH PF07995.6 gi|110667770|ref|YP_657581.1| - 6.3e-109 364.0 0.0 7.6e-109 363.7 0.0 1.1 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase PapC_C PF13953.1 gi|110667770|ref|YP_657581.1| - 0.12 12.0 0.2 0.58 9.8 0.0 2.0 2 0 0 2 2 2 0 PapC C-terminal domain 5TM-5TMR_LYT PF07694.7 gi|110667772|ref|YP_657583.1| - 0.12 11.6 2.9 0.15 11.4 2.0 1.1 1 0 0 1 1 1 0 5TMR of 5TMR-LYT TrbC PF04956.8 gi|110667772|ref|YP_657583.1| - 0.53 10.3 6.0 0.87 9.6 4.1 1.4 1 0 0 1 1 1 0 TrbC/VIRB2 family SKG6 PF08693.5 gi|110667772|ref|YP_657583.1| - 7.1 6.0 15.1 0.16 11.3 0.4 2.9 3 0 0 3 3 3 0 Transmembrane alpha-helix domain TMV_coat PF00721.16 gi|110667773|ref|YP_657584.1| - 0.062 13.2 0.1 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Virus coat protein (TMV like) Reo_sigmaC PF04582.7 gi|110667774|ref|YP_657585.1| - 3.8e-07 29.5 34.3 0.00093 18.4 6.7 4.2 1 1 2 4 4 4 2 Reovirus sigma C capsid protein AAA_23 PF13476.1 gi|110667774|ref|YP_657585.1| - 6.3e-07 29.9 29.9 6.3e-07 29.9 20.7 4.5 1 1 2 3 3 2 1 AAA domain ALIX_LYPXL_bnd PF13949.1 gi|110667774|ref|YP_657585.1| - 9.6e-07 28.0 55.7 9.8e-06 24.7 15.1 2.4 2 0 0 2 2 2 2 ALIX V-shaped domain binding to HIV Spc7 PF08317.6 gi|110667774|ref|YP_657585.1| - 2e-06 26.7 77.0 0.034 12.8 12.2 4.7 2 2 2 4 4 4 3 Spc7 kinetochore protein Myosin_tail_1 PF01576.14 gi|110667774|ref|YP_657585.1| - 2e-06 25.8 62.9 0.0019 16.0 19.7 2.2 2 0 0 2 2 2 2 Myosin tail Seryl_tRNA_N PF02403.17 gi|110667774|ref|YP_657585.1| - 4.8e-06 26.5 66.9 0.0083 16.1 9.1 5.5 2 2 3 5 5 5 3 Seryl-tRNA synthetase N-terminal domain DUF3584 PF12128.3 gi|110667774|ref|YP_657585.1| - 2.6e-05 21.8 62.9 0.00021 18.8 18.8 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3584) CENP-F_leu_zip PF10473.4 gi|110667774|ref|YP_657585.1| - 4.1e-05 23.4 77.0 0.13 12.0 13.4 5.6 2 2 3 5 5 5 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_13 PF13166.1 gi|110667774|ref|YP_657585.1| - 0.00018 20.1 65.7 0.0015 17.1 21.5 3.1 1 1 0 2 2 2 2 AAA domain AAA_27 PF13514.1 gi|110667774|ref|YP_657585.1| - 0.00031 18.5 50.1 0.0071 14.0 14.9 2.2 2 0 0 2 2 2 2 AAA domain APG6 PF04111.7 gi|110667774|ref|YP_657585.1| - 0.00083 18.5 20.1 0.00083 18.5 14.0 4.1 2 2 1 3 3 3 1 Autophagy protein Apg6 Prefoldin PF02996.12 gi|110667774|ref|YP_657585.1| - 0.00086 18.9 52.9 0.3 10.7 4.2 7.4 3 2 4 7 7 7 4 Prefoldin subunit WEMBL PF05701.6 gi|110667774|ref|YP_657585.1| - 0.0014 17.1 56.3 0.014 13.8 16.2 2.4 2 0 0 2 2 2 2 Weak chloroplast movement under blue light AAA_21 PF13304.1 gi|110667774|ref|YP_657585.1| - 0.0025 17.8 4.7 0.0025 17.8 3.2 2.4 2 1 0 2 2 2 1 AAA domain IncA PF04156.9 gi|110667774|ref|YP_657585.1| - 0.0039 16.7 28.4 0.0039 16.7 19.7 4.4 2 2 1 3 3 3 2 IncA protein DUF1664 PF07889.7 gi|110667774|ref|YP_657585.1| - 0.0078 16.0 7.6 0.0078 16.0 5.3 6.3 2 2 5 7 7 7 1 Protein of unknown function (DUF1664) DASH_Spc34 PF08657.5 gi|110667774|ref|YP_657585.1| - 0.011 15.3 3.2 0.011 15.3 2.2 5.3 2 2 3 5 5 3 0 DASH complex subunit Spc34 NPV_P10 PF05531.7 gi|110667774|ref|YP_657585.1| - 0.08 13.2 45.9 0.35 11.1 0.7 6.7 2 2 2 5 5 5 0 Nucleopolyhedrovirus P10 protein Atg14 PF10186.4 gi|110667774|ref|YP_657585.1| - 0.14 11.1 70.8 0.36 9.7 17.1 4.8 2 2 3 5 5 5 0 UV radiation resistance protein and autophagy-related subunit 14 DUF342 PF03961.8 gi|110667774|ref|YP_657585.1| - 0.15 10.4 57.2 0.046 12.1 5.2 4.2 1 1 2 4 4 4 0 Protein of unknown function (DUF342) TBPIP PF07106.8 gi|110667774|ref|YP_657585.1| - 0.28 10.7 69.7 1.4 8.4 6.3 5.0 2 2 2 4 4 4 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Filament PF00038.16 gi|110667774|ref|YP_657585.1| - 0.8 9.1 68.6 0.19 11.1 10.0 4.0 1 1 0 2 2 2 0 Intermediate filament protein Cast PF10174.4 gi|110667774|ref|YP_657585.1| - 0.95 7.4 67.6 1 7.3 21.3 2.9 1 1 0 2 2 2 0 RIM-binding protein of the cytomatrix active zone Fib_alpha PF08702.5 gi|110667774|ref|YP_657585.1| - 1.4 9.0 62.7 1.4 9.0 8.6 4.8 3 2 2 5 5 5 0 Fibrinogen alpha/beta chain family MscS_porin PF12795.2 gi|110667774|ref|YP_657585.1| - 1.6 8.0 68.7 1 8.6 25.1 3.6 2 2 2 4 4 4 0 Mechanosensitive ion channel porin domain GAS PF13851.1 gi|110667774|ref|YP_657585.1| - 2.1 7.5 68.9 0.27 10.3 16.8 4.7 3 2 2 5 5 4 0 Growth-arrest specific micro-tubule binding DivIC PF04977.10 gi|110667774|ref|YP_657585.1| - 2.1 7.8 71.4 0.063 12.7 4.0 9.1 3 2 6 9 9 9 0 Septum formation initiator BLOC1_2 PF10046.4 gi|110667774|ref|YP_657585.1| - 2.2 8.4 54.7 5.9 7.0 1.7 7.2 2 2 3 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Flagellin_C PF00700.16 gi|110667774|ref|YP_657585.1| - 2.3 8.4 28.5 6.3 7.0 1.1 5.9 4 2 0 4 4 4 0 Bacterial flagellin C-terminal helical region Phage_GP20 PF06810.6 gi|110667774|ref|YP_657585.1| - 2.3 7.6 62.7 0.17 11.3 8.5 5.7 2 2 1 4 4 4 0 Phage minor structural protein GP20 FlxA PF14282.1 gi|110667774|ref|YP_657585.1| - 2.9 7.8 72.3 5.7 6.9 9.3 5.5 2 2 1 4 4 4 0 FlxA-like protein Tropomyosin_1 PF12718.2 gi|110667774|ref|YP_657585.1| - 4.3 7.1 82.7 1.3 8.8 1.4 5.3 2 2 4 6 6 6 0 Tropomyosin like ATG16 PF08614.6 gi|110667774|ref|YP_657585.1| - 5.5 6.7 70.3 0.63 9.8 9.8 4.8 2 2 3 5 5 5 0 Autophagy protein 16 (ATG16) DUF2730 PF10805.3 gi|110667774|ref|YP_657585.1| - 8 6.2 34.9 0.18 11.5 1.2 5.3 2 2 4 6 6 6 0 Protein of unknown function (DUF2730) FliD_N PF02465.13 gi|110667774|ref|YP_657585.1| - 8.2 6.8 43.6 7.4 7.0 1.5 7.6 3 2 4 7 7 6 0 Flagellar hook-associated protein 2 N-terminus TPR_MLP1_2 PF07926.7 gi|110667774|ref|YP_657585.1| - 9.2 6.0 73.9 0.3 10.8 1.0 6.4 3 2 2 5 5 5 0 TPR/MLP1/MLP2-like protein adh_short PF00106.20 gi|110667775|ref|YP_657586.1| - 3.9e-17 62.6 6.2 7.5e-17 61.7 4.3 1.4 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|110667775|ref|YP_657586.1| - 5.5e-09 35.9 2.2 1e-08 35.0 1.5 1.4 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|110667775|ref|YP_657586.1| - 2.1e-08 33.8 0.1 2.8e-08 33.5 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|110667775|ref|YP_657586.1| - 0.0028 17.3 2.0 0.0039 16.9 0.5 1.9 2 0 0 2 2 2 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CarboxypepD_reg PF13620.1 gi|110667776|ref|YP_657587.1| - 7.4e-18 64.3 17.7 6.9e-10 38.8 0.9 4.4 4 0 0 4 4 4 4 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|110667776|ref|YP_657587.1| - 1.2e-11 44.4 8.3 0.0002 21.3 0.4 4.2 2 1 2 4 4 4 3 Domain of unknown function (DUF4480) Big_1 PF02369.11 gi|110667776|ref|YP_657587.1| - 1.7e-06 27.8 7.2 0.049 13.5 0.1 3.7 3 0 0 3 3 3 2 Bacterial Ig-like domain (group 1) DUF2606 PF10794.4 gi|110667776|ref|YP_657587.1| - 6e-05 22.4 1.3 0.61 9.5 0.0 3.2 3 0 0 3 3 3 2 Protein of unknown function (DUF2606) fn3_3 PF14686.1 gi|110667776|ref|YP_657587.1| - 7e-05 22.8 0.3 0.011 15.7 0.1 2.5 2 0 0 2 2 2 1 Polysaccharide lyase family 4, domain II DUF4198 PF10670.4 gi|110667776|ref|YP_657587.1| - 0.00036 20.6 0.2 0.56 10.1 0.0 3.2 3 0 0 3 3 3 1 Domain of unknown function (DUF4198) DUF2012 PF09430.5 gi|110667776|ref|YP_657587.1| - 0.00059 19.6 0.2 0.0031 17.3 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2012) PEGA PF08308.6 gi|110667776|ref|YP_657587.1| - 0.0006 19.5 7.6 0.01 15.5 0.1 3.2 3 1 0 3 3 3 2 PEGA domain Cna_B PF05738.8 gi|110667776|ref|YP_657587.1| - 0.0014 18.3 0.6 0.011 15.4 0.2 2.5 2 0 0 2 2 2 1 Cna protein B-type domain EMP24_GP25L PF01105.19 gi|110667776|ref|YP_657587.1| - 0.12 12.1 0.1 0.35 10.5 0.0 2.0 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD zf-RING_3 PF14369.1 gi|110667779|ref|YP_657590.1| - 0.035 14.1 0.4 0.55 10.2 0.0 2.3 2 0 0 2 2 2 0 zinc-finger Orthopox_A5L PF06193.6 gi|110667779|ref|YP_657590.1| - 0.057 13.3 2.5 0.069 13.0 1.5 1.3 1 1 0 1 1 1 0 Orthopoxvirus A5L protein-like DUF4428 PF14471.1 gi|110667779|ref|YP_657590.1| - 0.095 12.4 0.1 0.26 11.0 0.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) Adeno_PX PF05829.7 gi|110667780|ref|YP_657591.1| - 0.17 11.4 2.6 2.5 7.6 0.0 2.6 2 0 0 2 2 2 0 Adenovirus late L2 mu core protein (Protein X) DUF1129 PF06570.6 gi|110667780|ref|YP_657591.1| - 0.71 9.1 4.6 0.48 9.7 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) DUF626 PF04776.7 gi|110667781|ref|YP_657592.1| - 0.026 14.8 0.2 0.035 14.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF626) Herpes_pp85 PF04637.7 gi|110667781|ref|YP_657592.1| - 0.035 12.3 0.0 0.044 12.0 0.0 1.1 1 0 0 1 1 1 0 Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25) CBS PF00571.23 gi|110667783|ref|YP_657594.1| - 3.5e-21 74.7 2.8 5.5e-12 45.2 0.1 3.0 2 1 0 2 2 2 2 CBS domain HypA PF01155.14 gi|110667783|ref|YP_657594.1| - 0.0012 18.5 1.5 0.0035 17.0 1.1 1.9 1 1 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|110667783|ref|YP_657594.1| - 0.0036 17.2 4.5 0.01 15.7 3.1 1.7 1 1 0 1 1 1 1 Zinc ribbon domain DZR PF12773.2 gi|110667783|ref|YP_657594.1| - 0.018 14.8 1.1 0.03 14.1 0.7 1.3 1 0 0 1 1 1 0 Double zinc ribbon NOB1_Zn_bind PF08772.6 gi|110667783|ref|YP_657594.1| - 0.018 14.8 0.1 0.038 13.8 0.1 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DUF4371 PF14291.1 gi|110667783|ref|YP_657594.1| - 0.026 14.0 0.2 0.033 13.7 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4371) Prok-RING_1 PF14446.1 gi|110667783|ref|YP_657594.1| - 0.029 14.0 0.4 0.049 13.3 0.3 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C2HC5 PF06221.8 gi|110667783|ref|YP_657594.1| - 0.041 13.6 0.2 0.067 12.9 0.2 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type UNC-79 PF14776.1 gi|110667783|ref|YP_657594.1| - 0.051 11.9 1.0 0.098 11.0 0.0 1.7 2 0 0 2 2 2 0 Cation-channel complex subunit UNC-79 zf-RING_3 PF14369.1 gi|110667783|ref|YP_657594.1| - 0.29 11.1 4.2 0.71 9.9 2.9 1.8 1 1 0 1 1 1 0 zinc-finger TFIIS_C PF01096.13 gi|110667783|ref|YP_657594.1| - 0.37 10.4 2.3 2 8.1 0.0 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.1 gi|110667783|ref|YP_657594.1| - 0.61 9.6 4.6 1 8.9 3.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|110667783|ref|YP_657594.1| - 3.6 6.9 5.8 14 5.0 0.8 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding GATase_3 PF07685.9 gi|110667784|ref|YP_657595.1| - 1.7e-29 102.4 0.0 2.7e-29 101.7 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|110667784|ref|YP_657595.1| - 1.8e-20 73.1 0.0 4.7e-20 71.8 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|110667784|ref|YP_657595.1| - 8.1e-11 41.9 0.0 3.9e-05 23.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain Fer4_15 PF13459.1 gi|110667785|ref|YP_657596.1| - 1.2e-08 35.3 1.9 2e-08 34.6 1.3 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain CbiG_N PF11760.3 gi|110667786|ref|YP_657597.1| - 4.6e-26 90.3 0.4 2.3e-25 88.1 0.0 2.2 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.11 gi|110667786|ref|YP_657597.1| - 7.3e-25 87.5 0.0 1.5e-24 86.5 0.0 1.5 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus TP_methylase PF00590.15 gi|110667787|ref|YP_657598.1| - 6.2e-38 130.6 0.3 7.4e-38 130.3 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases RraB PF06877.6 gi|110667787|ref|YP_657598.1| - 0.067 13.8 0.0 0.2 12.3 0.0 1.7 1 0 0 1 1 1 0 Regulator of ribonuclease activity B TP_methylase PF00590.15 gi|110667788|ref|YP_657599.1| - 2.2e-33 115.7 0.0 2.8e-33 115.3 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Glyoxalase_2 PF12681.2 gi|110667788|ref|YP_657599.1| - 0.11 13.1 0.0 0.22 12.1 0.0 1.7 1 1 0 1 1 1 0 Glyoxalase-like domain CopK PF11525.3 gi|110667788|ref|YP_657599.1| - 0.15 11.6 0.0 0.3 10.7 0.0 1.4 1 0 0 1 1 1 0 Copper resistance protein K Methyltransf_18 PF12847.2 gi|110667789|ref|YP_657600.1| - 5.6e-10 39.7 0.0 1e-09 38.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|110667789|ref|YP_657600.1| - 1.4e-06 27.8 0.0 3.7e-06 26.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase small domain PCMT PF01135.14 gi|110667789|ref|YP_657600.1| - 5.6e-06 26.0 0.0 8.7e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|110667789|ref|YP_657600.1| - 7.8e-06 25.5 0.0 8.8e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|110667789|ref|YP_657600.1| - 2.3e-05 24.4 0.1 3.5e-05 23.8 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|110667789|ref|YP_657600.1| - 3e-05 23.2 0.1 4.8e-05 22.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.15 gi|110667789|ref|YP_657600.1| - 0.00049 19.2 0.1 0.00071 18.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Cons_hypoth95 PF03602.10 gi|110667789|ref|YP_657600.1| - 0.00059 19.2 0.0 0.00086 18.7 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 CMAS PF02353.15 gi|110667789|ref|YP_657600.1| - 0.00064 18.8 0.0 0.00096 18.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DOT1 PF08123.8 gi|110667789|ref|YP_657600.1| - 0.0014 18.0 0.0 0.002 17.5 0.0 1.5 1 1 0 1 1 1 1 Histone methylation protein DOT1 UPF0020 PF01170.13 gi|110667789|ref|YP_657600.1| - 0.011 15.2 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.1 gi|110667789|ref|YP_657600.1| - 0.022 15.1 0.0 0.029 14.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.11 gi|110667789|ref|YP_657600.1| - 0.086 12.4 0.2 0.16 11.5 0.1 1.4 1 1 0 1 1 1 0 Met-10+ like-protein Methyltransf_23 PF13489.1 gi|110667789|ref|YP_657600.1| - 0.087 12.5 0.0 0.12 12.0 0.0 1.2 1 1 0 1 1 1 0 Methyltransferase domain GCD14 PF08704.5 gi|110667789|ref|YP_657600.1| - 0.088 12.2 0.0 0.13 11.6 0.0 1.4 1 1 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit CbiM PF01891.11 gi|110667790|ref|YP_657601.1| - 2.8e-49 167.5 19.8 3.1e-49 167.3 13.7 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region CbiN PF02553.10 gi|110667791|ref|YP_657602.1| - 4.4e-09 36.1 0.0 6.2e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 Cobalt transport protein component CbiN CbiQ PF02361.11 gi|110667792|ref|YP_657603.1| - 1.8e-32 112.7 15.6 1.8e-32 112.7 10.8 1.4 2 0 0 2 2 2 1 Cobalt transport protein DUF997 PF06196.7 gi|110667792|ref|YP_657603.1| - 0.23 10.9 2.0 0.21 11.1 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF997) ABC_tran PF00005.22 gi|110667793|ref|YP_657604.1| - 5.3e-29 101.2 0.0 6.8e-29 100.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110667793|ref|YP_657604.1| - 3.5e-10 40.3 0.0 0.00035 20.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|110667793|ref|YP_657604.1| - 5.6e-07 29.0 0.0 0.00013 21.2 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|110667793|ref|YP_657604.1| - 7.1e-05 22.2 0.1 0.00012 21.4 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|110667793|ref|YP_657604.1| - 0.00046 19.3 0.0 0.37 9.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|110667793|ref|YP_657604.1| - 0.0017 17.5 0.0 0.0024 17.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|110667793|ref|YP_657604.1| - 0.0025 18.1 0.0 0.0032 17.8 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|110667793|ref|YP_657604.1| - 0.0066 16.4 0.0 0.016 15.2 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|110667793|ref|YP_657604.1| - 0.011 15.1 0.0 0.031 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|110667793|ref|YP_657604.1| - 0.012 16.0 0.0 0.02 15.4 0.0 1.2 1 0 0 1 1 1 0 Miro-like protein AAA_22 PF13401.1 gi|110667793|ref|YP_657604.1| - 0.033 14.3 0.0 0.041 14.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|110667793|ref|YP_657604.1| - 0.055 12.8 0.0 1.7 8.0 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain Zeta_toxin PF06414.7 gi|110667793|ref|YP_657604.1| - 0.062 12.3 0.0 0.096 11.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_13 PF13166.1 gi|110667793|ref|YP_657604.1| - 0.089 11.2 0.0 0.27 9.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|110667793|ref|YP_657604.1| - 0.098 12.0 0.1 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MutS_V PF00488.16 gi|110667793|ref|YP_657604.1| - 0.1 11.9 0.0 0.22 10.8 0.0 1.5 2 0 0 2 2 2 0 MutS domain V Arch_ATPase PF01637.13 gi|110667793|ref|YP_657604.1| - 0.11 12.1 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_30 PF13604.1 gi|110667793|ref|YP_657604.1| - 0.14 11.6 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain RHH_1 PF01402.16 gi|110667794|ref|YP_657605.1| - 0.028 14.3 0.1 0.038 13.8 0.0 1.2 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family WGG PF10273.4 gi|110667794|ref|YP_657605.1| - 0.35 10.9 1.7 0.7 10.0 1.1 1.6 1 1 0 1 1 1 0 Pre-rRNA-processing protein TSR2 adh_short_C2 PF13561.1 gi|110667795|ref|YP_657606.1| - 1.3e-21 77.4 0.0 1.6e-21 77.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|110667795|ref|YP_657606.1| - 1.9e-21 76.6 0.7 2.4e-21 76.3 0.5 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|110667795|ref|YP_657606.1| - 3.5e-09 36.5 0.2 5.2e-09 36.0 0.1 1.3 1 0 0 1 1 1 1 KR domain MFS_1 PF07690.11 gi|110667796|ref|YP_657607.1| - 3e-42 144.5 65.0 2e-40 138.5 28.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.14 gi|110667796|ref|YP_657607.1| - 0.00026 19.6 1.3 0.00026 19.6 0.9 2.0 2 0 0 2 2 2 1 LacY proton/sugar symporter MFS_2 PF13347.1 gi|110667796|ref|YP_657607.1| - 0.00028 19.4 25.1 0.00056 18.4 17.4 1.5 1 0 0 1 1 1 1 MFS/sugar transport protein DUF4131 PF13567.1 gi|110667796|ref|YP_657607.1| - 0.0074 15.7 1.8 0.0074 15.7 1.2 3.5 2 1 0 3 3 3 1 Domain of unknown function (DUF4131) DUF1228 PF06779.9 gi|110667796|ref|YP_657607.1| - 0.03 14.3 0.5 0.03 14.3 0.4 3.4 4 1 0 4 4 4 0 Protein of unknown function (DUF1228) YwiC PF14256.1 gi|110667796|ref|YP_657607.1| - 6.6 6.8 34.2 1.2 9.2 3.0 4.8 2 1 2 5 5 5 0 YwiC-like protein DHFR_1 PF00186.14 gi|110667797|ref|YP_657608.1| - 2.2e-38 131.3 0.0 2.4e-38 131.2 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase RibD_C PF01872.12 gi|110667797|ref|YP_657608.1| - 0.051 13.1 0.0 0.078 12.5 0.0 1.3 1 1 0 1 1 1 0 RibD C-terminal domain PMSR PF01625.16 gi|110667798|ref|YP_657609.1| - 2.8e-66 222.1 1.1 3.4e-66 221.9 0.8 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase Aldedh PF00171.17 gi|110667799|ref|YP_657610.1| - 2.5e-26 92.0 1.8 1.7e-20 72.8 0.3 2.1 2 0 0 2 2 2 2 Aldehyde dehydrogenase family Pup PF05639.6 gi|110667799|ref|YP_657610.1| - 8.5 6.9 8.0 3.2 8.3 0.7 3.3 3 0 0 3 3 3 0 Pup-like protein AA_kinase PF00696.23 gi|110667800|ref|YP_657611.1| - 1.6e-42 145.7 2.8 2e-42 145.3 2.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family Glyco_hydro_3_C PF01915.17 gi|110667800|ref|YP_657611.1| - 0.8 9.1 4.5 0.36 10.3 1.0 1.8 2 0 0 2 2 2 0 Glycosyl hydrolase family 3 C-terminal domain P5CR_dimer PF14748.1 gi|110667801|ref|YP_657612.1| - 7.2e-34 116.0 0.3 7.2e-34 116.0 0.2 1.8 2 0 0 2 2 2 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|110667801|ref|YP_657612.1| - 1.4e-09 38.2 0.0 5.1e-09 36.4 0.0 2.0 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|110667801|ref|YP_657612.1| - 8.5e-05 22.4 0.0 0.00025 20.9 0.0 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|110667801|ref|YP_657612.1| - 0.0057 15.8 0.0 0.011 14.8 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|110667801|ref|YP_657612.1| - 0.0069 16.0 0.0 0.019 14.6 0.0 1.6 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|110667801|ref|YP_657612.1| - 0.01 15.8 0.1 0.083 12.8 0.0 2.5 1 1 0 2 2 2 0 TrkA-N domain PDH PF02153.12 gi|110667801|ref|YP_657612.1| - 0.011 14.5 0.5 0.026 13.4 0.3 1.6 2 0 0 2 2 2 0 Prephenate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|110667801|ref|YP_657612.1| - 0.042 13.5 1.8 1.1 8.9 1.2 2.3 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ThiF PF00899.16 gi|110667801|ref|YP_657612.1| - 0.48 10.2 3.4 1.3 8.8 1.7 2.3 1 1 1 2 2 2 0 ThiF family FmdA_AmdA PF03069.10 gi|110667802|ref|YP_657613.1| - 4.5e-51 173.6 0.2 2e-46 158.4 0.0 2.0 1 1 1 2 2 2 2 Acetamidase/Formamidase family UPF0547 PF10571.4 gi|110667802|ref|YP_657613.1| - 0.0023 17.5 2.7 0.0085 15.7 1.9 1.8 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|110667802|ref|YP_657613.1| - 0.011 15.5 0.3 0.02 14.6 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_S27e PF01667.12 gi|110667802|ref|YP_657613.1| - 0.025 14.1 0.0 0.047 13.2 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 Zn-ribbon_8 PF09723.5 gi|110667802|ref|YP_657613.1| - 0.043 13.7 0.3 0.15 12.0 0.3 1.8 2 0 0 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|110667802|ref|YP_657613.1| - 0.1 11.9 1.0 0.29 10.4 0.7 1.8 1 0 0 1 1 1 0 TFIIB zinc-binding DUF4379 PF14311.1 gi|110667802|ref|YP_657613.1| - 0.2 11.5 1.7 0.55 10.0 1.2 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4379) DNA_RNApol_7kD PF03604.8 gi|110667802|ref|YP_657613.1| - 0.22 11.0 3.5 1.3 8.5 2.4 2.1 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|110667802|ref|YP_657613.1| - 0.25 10.8 2.0 2.6 7.6 1.3 2.3 1 1 1 2 2 2 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|110667802|ref|YP_657613.1| - 0.4 10.4 3.3 9.9 5.9 0.2 3.0 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.1 gi|110667802|ref|YP_657613.1| - 2.3 7.5 5.7 32 3.9 4.0 2.3 1 1 1 2 2 2 0 zinc-ribbon domain ThiS PF02597.15 gi|110667803|ref|YP_657614.1| - 1.9e-08 34.5 0.0 5.8e-08 33.0 0.0 1.7 2 0 0 2 2 2 1 ThiS family Urm1 PF09138.6 gi|110667803|ref|YP_657614.1| - 0.0058 16.7 0.0 0.0066 16.5 0.0 1.2 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) DUF908 PF06012.7 gi|110667803|ref|YP_657614.1| - 0.13 11.4 0.0 0.17 11.1 0.0 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF908) MatE PF01554.13 gi|110667805|ref|YP_657616.1| - 5.9e-44 149.5 35.7 2.3e-22 79.3 9.1 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|110667805|ref|YP_657616.1| - 5e-09 36.1 6.2 5e-09 36.1 4.3 4.6 3 2 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain EcsB PF05975.7 gi|110667805|ref|YP_657616.1| - 0.54 8.6 4.5 0.15 10.4 0.2 2.0 2 0 0 2 2 2 0 Bacterial ABC transporter protein EcsB DEAD PF00270.24 gi|110667806|ref|YP_657617.1| - 1.9e-18 66.5 0.0 3.4e-18 65.7 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|110667806|ref|YP_657617.1| - 5.7e-14 52.4 0.0 1.8e-13 50.8 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.26 gi|110667806|ref|YP_657617.1| - 4.3e-11 42.5 0.0 2.4e-10 40.1 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|110667806|ref|YP_657617.1| - 3.3e-07 30.3 0.0 7.1e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit RNase_H_2 PF13482.1 gi|110667807|ref|YP_657618.1| - 1.8e-34 118.9 0.0 2.4e-34 118.4 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily HHH_5 PF14520.1 gi|110667807|ref|YP_657618.1| - 8.4e-08 32.2 0.0 2.1e-07 31.0 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|110667807|ref|YP_657618.1| - 0.00029 20.6 0.0 0.00063 19.5 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.18 gi|110667807|ref|YP_657618.1| - 0.013 15.1 0.0 0.45 10.3 0.0 3.1 3 0 0 3 3 3 0 Helix-hairpin-helix motif DNA_pol_B_exo2 PF10108.4 gi|110667807|ref|YP_657618.1| - 0.017 14.6 0.0 0.081 12.4 0.0 2.0 1 1 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Myosin_tail_1 PF01576.14 gi|110667809|ref|YP_657620.1| - 0.0074 14.0 1.7 0.011 13.5 1.2 1.1 1 0 0 1 1 1 1 Myosin tail WWE PF02825.15 gi|110667809|ref|YP_657620.1| - 0.096 12.1 0.1 3.2 7.2 0.0 3.0 3 0 0 3 3 3 0 WWE domain ASC PF00858.19 gi|110667809|ref|YP_657620.1| - 0.16 10.5 0.0 0.22 10.1 0.0 1.1 1 0 0 1 1 1 0 Amiloride-sensitive sodium channel Trypsin_2 PF13365.1 gi|110667810|ref|YP_657621.1| - 6.6e-17 61.6 0.5 1.2e-16 60.7 0.3 1.5 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.1 gi|110667810|ref|YP_657621.1| - 7.3e-16 57.8 0.3 1.9e-15 56.5 0.2 1.7 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.21 gi|110667810|ref|YP_657621.1| - 3e-12 46.6 0.2 7e-12 45.3 0.1 1.6 1 1 0 1 1 1 1 Trypsin DUF533 PF04391.7 gi|110667810|ref|YP_657621.1| - 0.02 14.3 0.3 0.46 9.8 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF533) Tricorn_PDZ PF14685.1 gi|110667810|ref|YP_657621.1| - 0.079 12.7 0.2 0.4 10.5 0.1 2.2 2 0 0 2 2 2 0 Tricorn protease PDZ domain Peptidase_S3 PF00944.14 gi|110667810|ref|YP_657621.1| - 0.1 11.9 0.3 0.2 11.0 0.2 1.4 1 0 0 1 1 1 0 Alphavirus core protein GCV_T PF01571.16 gi|110667811|ref|YP_657622.1| - 1.1e-40 139.2 0.0 1.8e-40 138.5 0.0 1.3 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|110667811|ref|YP_657622.1| - 2.6e-08 33.7 0.0 4.9e-08 32.8 0.0 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain Y1_Tnp PF01797.11 gi|110667812|ref|YP_657623.1| - 0.1 12.4 0.3 0.29 10.9 0.2 1.7 1 1 0 1 1 1 0 Transposase IS200 like OrfB_Zn_ribbon PF07282.6 gi|110667813|ref|YP_657624.1| - 1.2e-20 72.9 0.4 2.3e-20 72.0 0.3 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|110667813|ref|YP_657624.1| - 0.0055 16.4 7.5 0.011 15.5 5.2 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain HTH_10 PF04967.7 gi|110667815|ref|YP_657626.1| - 1.6e-16 59.5 0.0 2.6e-16 58.9 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|110667815|ref|YP_657626.1| - 9.6e-05 21.6 0.0 0.00018 20.7 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|110667815|ref|YP_657626.1| - 0.013 15.1 0.0 0.027 14.1 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_AsnC-type PF13404.1 gi|110667815|ref|YP_657626.1| - 0.039 13.4 0.1 0.075 12.5 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|110667815|ref|YP_657626.1| - 0.048 13.0 0.0 0.098 12.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding UPF0122 PF04297.9 gi|110667815|ref|YP_657626.1| - 0.061 13.3 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r4_2 PF08281.7 gi|110667815|ref|YP_657626.1| - 0.14 11.6 0.0 0.41 10.1 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 Aminotran_5 PF00266.14 gi|110667816|ref|YP_657627.1| - 1.2e-59 201.9 0.0 1.4e-59 201.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V HTH_10 PF04967.7 gi|110667817|ref|YP_657628.1| - 4.5e-19 67.7 0.1 7.8e-19 67.0 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|110667817|ref|YP_657628.1| - 0.049 12.9 0.0 0.12 11.7 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 DUF2493 PF10686.4 gi|110667817|ref|YP_657628.1| - 0.097 12.2 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2493) BCD PF15461.1 gi|110667818|ref|YP_657629.1| - 1.5e-66 224.4 20.3 2e-66 224.1 14.0 1.1 1 0 0 1 1 1 1 Beta-carotene 15,15'-dioxygenase CSD PF00313.17 gi|110667820|ref|YP_657631.1| - 7.7e-21 73.6 0.2 8.5e-21 73.5 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|110667820|ref|YP_657631.1| - 0.01 15.5 0.9 0.015 15.0 0.6 1.3 1 1 0 1 1 1 0 S1-like CusF_Ec PF11604.3 gi|110667820|ref|YP_657631.1| - 0.012 15.3 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF OB_RNB PF08206.6 gi|110667820|ref|YP_657631.1| - 0.03 13.8 1.2 0.044 13.2 0.9 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain TFIIB PF00382.14 gi|110667821|ref|YP_657632.1| - 4.1e-45 151.4 1.1 7.3e-23 80.1 0.1 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|110667821|ref|YP_657632.1| - 5e-18 64.1 1.4 8.1e-18 63.4 1.0 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|110667821|ref|YP_657632.1| - 0.0034 16.8 2.8 0.03 13.7 1.9 2.2 1 1 1 2 2 2 1 A2L zinc ribbon domain HTH_23 PF13384.1 gi|110667821|ref|YP_657632.1| - 0.01 15.4 0.3 0.59 9.8 0.0 3.3 3 0 0 3 3 3 0 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|110667821|ref|YP_657632.1| - 0.014 14.7 0.8 0.3 10.4 0.0 3.3 3 1 0 3 3 3 0 Sigma-70, region 4 Ribosomal_S27e PF01667.12 gi|110667821|ref|YP_657632.1| - 0.02 14.4 0.2 0.04 13.4 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 RRN7 PF11781.3 gi|110667821|ref|YP_657632.1| - 0.061 12.8 0.5 0.11 11.9 0.3 1.5 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 Trm112p PF03966.11 gi|110667821|ref|YP_657632.1| - 0.071 13.4 1.2 0.34 11.3 0.8 2.2 1 1 0 1 1 1 0 Trm112p-like protein Cyclin_N PF00134.18 gi|110667821|ref|YP_657632.1| - 0.078 12.5 0.0 0.28 10.7 0.0 1.9 2 0 0 2 2 2 0 Cyclin, N-terminal domain OrfB_Zn_ribbon PF07282.6 gi|110667821|ref|YP_657632.1| - 0.082 12.5 0.5 0.24 11.0 0.4 1.8 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Cyclin_C PF02984.14 gi|110667821|ref|YP_657632.1| - 0.085 12.7 0.0 0.5 10.3 0.0 2.0 2 0 0 2 2 2 0 Cyclin, C-terminal domain Elf1 PF05129.8 gi|110667821|ref|YP_657632.1| - 0.1 12.3 0.2 0.26 11.0 0.1 1.6 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|110667821|ref|YP_657632.1| - 0.11 12.8 0.4 0.27 11.5 0.3 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-RING_3 PF14369.1 gi|110667821|ref|YP_657632.1| - 1.3 9.1 3.9 1.3 9.0 0.3 2.3 1 1 1 2 2 2 0 zinc-finger Zn-ribbon_8 PF09723.5 gi|110667821|ref|YP_657632.1| - 1.6 8.7 3.8 6.7 6.7 0.6 2.5 1 1 0 2 2 2 0 Zinc ribbon domain Methyltransf_26 PF13659.1 gi|110667822|ref|YP_657633.1| - 2.2e-14 53.4 0.0 2.9e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|110667822|ref|YP_657633.1| - 2.3e-12 46.8 0.0 3.6e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|110667822|ref|YP_657633.1| - 3.4e-11 42.8 0.1 5.6e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|110667822|ref|YP_657633.1| - 1.4e-10 40.7 0.1 2.1e-10 40.1 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.1 gi|110667822|ref|YP_657633.1| - 1.1e-08 34.8 0.0 1.9e-08 34.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|110667822|ref|YP_657633.1| - 1.5e-07 31.6 0.0 3.3e-07 30.5 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|110667822|ref|YP_657633.1| - 3.4e-07 29.8 0.0 4.5e-07 29.4 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_18 PF12847.2 gi|110667822|ref|YP_657633.1| - 3.6e-07 30.7 0.0 5.4e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|110667822|ref|YP_657633.1| - 1.2e-05 25.7 0.0 2.5e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|110667822|ref|YP_657633.1| - 4.8e-05 22.5 0.0 6.9e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_15 PF09445.5 gi|110667822|ref|YP_657633.1| - 8e-05 22.2 0.0 0.00011 21.7 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Ubie_methyltran PF01209.13 gi|110667822|ref|YP_657633.1| - 9.5e-05 21.6 0.0 0.00015 20.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.1 gi|110667822|ref|YP_657633.1| - 0.00031 20.4 0.0 0.00043 19.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|110667822|ref|YP_657633.1| - 0.0004 19.4 0.0 0.00059 18.9 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_23 PF13489.1 gi|110667822|ref|YP_657633.1| - 0.0091 15.7 0.0 0.013 15.2 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|110667822|ref|YP_657633.1| - 0.049 13.2 0.0 0.067 12.7 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_12 PF08242.7 gi|110667822|ref|YP_657633.1| - 0.077 13.4 0.0 0.16 12.4 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.12 gi|110667822|ref|YP_657633.1| - 0.11 11.5 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Rhomboid PF01694.17 gi|110667823|ref|YP_657634.1| - 0.0011 18.9 17.7 0.0011 18.9 12.2 3.2 2 1 0 2 2 2 1 Rhomboid family UPF0058 PF01893.11 gi|110667824|ref|YP_657635.1| - 1.1e-34 118.2 0.5 1.3e-34 118.1 0.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Chorismate_bind PF00425.13 gi|110667826|ref|YP_657637.1| - 3.8e-71 239.4 0.0 5.2e-71 238.9 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme TPP_enzyme_N PF02776.13 gi|110667827|ref|YP_657638.1| - 4.3e-32 110.9 0.1 1.5e-31 109.1 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|110667827|ref|YP_657638.1| - 4.2e-08 32.9 0.0 1.2e-07 31.4 0.0 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|110667827|ref|YP_657638.1| - 0.00072 19.3 0.0 0.0014 18.3 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain ECH PF00378.15 gi|110667828|ref|YP_657639.1| - 2.4e-43 148.0 0.0 1.4e-42 145.4 0.0 1.8 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family UbiA PF01040.13 gi|110667829|ref|YP_657640.1| - 7.3e-37 126.9 25.9 8.9e-37 126.6 18.0 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family PRA1 PF03208.14 gi|110667829|ref|YP_657640.1| - 0.68 9.2 8.7 0.26 10.6 1.7 2.6 2 1 0 2 2 2 0 PRA1 family protein MR_MLE PF01188.16 gi|110667830|ref|YP_657641.1| - 6.4e-16 58.6 0.7 2.7e-15 56.6 0.4 2.1 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|110667830|ref|YP_657641.1| - 4.1e-14 52.5 0.5 4.1e-14 52.5 0.3 2.3 3 0 0 3 3 3 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|110667830|ref|YP_657641.1| - 6e-05 23.0 0.0 0.00013 21.9 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PyrI PF01948.13 gi|110667832|ref|YP_657643.1| - 2.8e-36 123.3 0.9 3.8e-36 123.0 0.6 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|110667832|ref|YP_657643.1| - 7.2e-17 60.5 0.6 1.2e-16 59.8 0.4 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.16 gi|110667833|ref|YP_657644.1| - 7.7e-46 155.2 0.0 2e-45 153.9 0.0 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|110667833|ref|YP_657644.1| - 2.5e-36 124.9 0.0 3.5e-36 124.4 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ELFV_dehydrog PF00208.16 gi|110667834|ref|YP_657645.1| - 1.7e-71 240.6 0.3 2.2e-71 240.3 0.2 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|110667834|ref|YP_657645.1| - 4.9e-50 168.4 0.0 7.9e-50 167.8 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|110667834|ref|YP_657645.1| - 0.0042 16.2 0.1 0.0088 15.2 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|110667834|ref|YP_657645.1| - 0.023 14.2 0.1 0.044 13.3 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain IlvN PF07991.7 gi|110667834|ref|YP_657645.1| - 0.044 13.1 0.1 0.075 12.4 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Malic_M PF03949.10 gi|110667834|ref|YP_657645.1| - 0.055 13.0 0.2 0.08 12.4 0.1 1.3 1 0 0 1 1 1 0 Malic enzyme, NAD binding domain FBPase PF00316.15 gi|110667835|ref|YP_657646.1| - 2.6e-61 207.2 0.0 3.3e-61 206.9 0.0 1.0 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase Inositol_P PF00459.20 gi|110667835|ref|YP_657646.1| - 0.006 15.9 0.0 0.012 14.9 0.0 1.4 1 1 0 1 1 1 1 Inositol monophosphatase family Rab5-bind PF09311.6 gi|110667836|ref|YP_657647.1| - 0.0016 18.3 5.7 0.002 18.0 3.9 1.0 1 0 0 1 1 1 1 Rabaptin-like protein HRDC PF00570.18 gi|110667836|ref|YP_657647.1| - 0.0024 17.5 0.1 0.59 9.8 0.0 2.3 2 0 0 2 2 2 1 HRDC domain Filament PF00038.16 gi|110667836|ref|YP_657647.1| - 0.0032 17.0 2.1 0.0035 16.8 1.5 1.1 1 0 0 1 1 1 1 Intermediate filament protein HR1 PF02185.11 gi|110667836|ref|YP_657647.1| - 0.0038 16.9 0.9 0.0066 16.1 0.1 1.8 2 0 0 2 2 1 1 Hr1 repeat DegS PF05384.6 gi|110667836|ref|YP_657647.1| - 0.004 16.3 2.1 0.0048 16.1 1.5 1.2 1 0 0 1 1 1 1 Sensor protein DegS MCPsignal PF00015.16 gi|110667836|ref|YP_657647.1| - 0.0057 16.2 4.8 0.0065 16.0 3.4 1.2 1 0 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain EzrA PF06160.7 gi|110667836|ref|YP_657647.1| - 0.008 14.4 2.0 0.0084 14.3 1.4 1.2 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA Cep57_CLD_2 PF14197.1 gi|110667836|ref|YP_657647.1| - 0.016 15.1 0.9 0.025 14.5 0.6 1.3 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 DUF972 PF06156.8 gi|110667836|ref|YP_657647.1| - 0.017 15.4 2.5 0.024 14.9 1.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF972) BLOC1_2 PF10046.4 gi|110667836|ref|YP_657647.1| - 0.019 15.0 2.0 0.026 14.6 1.0 1.5 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4201 PF13870.1 gi|110667836|ref|YP_657647.1| - 0.029 13.8 1.0 0.04 13.3 0.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) DUF1664 PF07889.7 gi|110667836|ref|YP_657647.1| - 0.031 14.0 0.9 0.04 13.7 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF2730 PF10805.3 gi|110667836|ref|YP_657647.1| - 0.035 13.8 0.7 0.054 13.2 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) RmuC PF02646.11 gi|110667836|ref|YP_657647.1| - 0.038 12.8 1.2 0.044 12.6 0.8 1.1 1 0 0 1 1 1 0 RmuC family DASH_Dad2 PF08654.5 gi|110667836|ref|YP_657647.1| - 0.05 13.6 2.6 0.15 12.0 1.8 2.0 1 1 0 1 1 1 0 DASH complex subunit Dad2 AATF-Che1 PF13339.1 gi|110667836|ref|YP_657647.1| - 0.05 13.7 2.6 0.068 13.3 1.8 1.4 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor zf-C4H2 PF10146.4 gi|110667836|ref|YP_657647.1| - 0.052 13.5 1.3 0.066 13.2 0.9 1.3 1 0 0 1 1 1 0 Zinc finger-containing protein IncA PF04156.9 gi|110667836|ref|YP_657647.1| - 0.066 12.7 1.8 0.077 12.5 1.3 1.2 1 0 0 1 1 1 0 IncA protein YPEB PF14620.1 gi|110667836|ref|YP_657647.1| - 0.069 12.1 1.2 0.077 11.9 0.8 1.1 1 0 0 1 1 1 0 YpeB sporulation EAP30 PF04157.11 gi|110667836|ref|YP_657647.1| - 0.071 12.2 0.9 0.077 12.1 0.6 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family Laminin_II PF06009.7 gi|110667836|ref|YP_657647.1| - 0.074 12.8 3.9 0.14 11.9 2.7 1.6 1 1 0 1 1 1 0 Laminin Domain II DUF3829 PF12889.2 gi|110667836|ref|YP_657647.1| - 0.083 12.0 1.6 0.1 11.7 1.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3829) RP-C_C PF11800.3 gi|110667836|ref|YP_657647.1| - 0.085 12.5 3.7 0.097 12.3 2.5 1.1 1 0 0 1 1 1 0 Replication protein C C-terminal region eIF3_N PF09440.5 gi|110667836|ref|YP_657647.1| - 0.1 12.7 2.7 0.12 12.5 1.8 1.2 1 0 0 1 1 1 0 eIF3 subunit 6 N terminal domain Spc24 PF08286.6 gi|110667836|ref|YP_657647.1| - 0.11 12.2 4.1 0.16 11.6 2.9 1.5 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 DUF1598 PF07643.6 gi|110667836|ref|YP_657647.1| - 0.11 12.5 0.3 0.16 12.0 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1598) Spc7 PF08317.6 gi|110667836|ref|YP_657647.1| - 0.11 11.0 3.4 0.13 10.8 2.4 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF1098 PF06497.6 gi|110667836|ref|YP_657647.1| - 0.12 12.3 0.7 0.17 11.9 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1098) NPV_P10 PF05531.7 gi|110667836|ref|YP_657647.1| - 0.13 12.5 1.5 0.2 11.9 1.1 1.4 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein T2SM PF04612.7 gi|110667836|ref|YP_657647.1| - 0.13 12.0 1.4 0.16 11.7 0.9 1.1 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M Reo_sigmaC PF04582.7 gi|110667836|ref|YP_657647.1| - 0.14 11.3 1.1 0.14 11.2 0.7 1.0 1 0 0 1 1 1 0 Reovirus sigma C capsid protein DUF812 PF05667.6 gi|110667836|ref|YP_657647.1| - 0.14 10.6 5.2 0.17 10.3 3.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) ArsA_ATPase PF02374.10 gi|110667836|ref|YP_657647.1| - 0.16 11.0 1.9 0.22 10.5 1.3 1.3 1 1 0 1 1 1 0 Anion-transporting ATPase Syntaxin-6_N PF09177.6 gi|110667836|ref|YP_657647.1| - 0.18 12.2 2.8 0.22 11.9 1.8 1.3 1 1 0 1 1 1 0 Syntaxin 6, N-terminal FlaC_arch PF05377.6 gi|110667836|ref|YP_657647.1| - 0.18 11.7 2.8 2.6 8.0 0.4 2.2 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Prominin PF05478.6 gi|110667836|ref|YP_657647.1| - 0.18 9.2 0.6 0.18 9.3 0.4 1.0 1 0 0 1 1 1 0 Prominin Med9 PF07544.8 gi|110667836|ref|YP_657647.1| - 0.2 11.4 1.9 0.29 10.8 0.9 1.6 1 1 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 CHASE3 PF05227.8 gi|110667836|ref|YP_657647.1| - 0.21 11.2 6.2 0.24 11.0 3.9 1.4 1 1 0 1 1 1 0 CHASE3 domain CENP-F_leu_zip PF10473.4 gi|110667836|ref|YP_657647.1| - 0.21 11.4 6.7 0.29 10.9 4.6 1.3 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF948 PF06103.6 gi|110667836|ref|YP_657647.1| - 0.22 11.3 2.3 0.44 10.4 1.4 1.6 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) HTH_37 PF13744.1 gi|110667836|ref|YP_657647.1| - 0.25 11.1 2.5 0.26 11.1 0.8 1.7 1 1 0 2 2 2 0 Helix-turn-helix domain CASP_C PF08172.7 gi|110667836|ref|YP_657647.1| - 0.27 10.2 2.5 0.35 9.8 1.7 1.1 1 0 0 1 1 1 0 CASP C terminal Atg14 PF10186.4 gi|110667836|ref|YP_657647.1| - 0.28 10.1 1.4 0.29 10.0 0.9 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF4404 PF14357.1 gi|110667836|ref|YP_657647.1| - 0.3 11.5 4.0 0.36 11.2 2.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) Halo_GVPC PF05465.8 gi|110667836|ref|YP_657647.1| - 0.31 10.9 3.4 4.3 7.3 0.0 2.6 3 0 0 3 3 2 0 Halobacterial gas vesicle protein C (GVPC) repeat FlgN PF05130.7 gi|110667836|ref|YP_657647.1| - 0.38 10.9 5.9 0.56 10.4 4.1 1.3 1 1 0 1 1 1 0 FlgN protein DUF2203 PF09969.4 gi|110667836|ref|YP_657647.1| - 0.42 10.8 3.0 0.55 10.4 1.9 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) Mnd1 PF03962.10 gi|110667836|ref|YP_657647.1| - 0.42 10.2 5.1 0.49 10.0 3.5 1.1 1 0 0 1 1 1 0 Mnd1 family V_ATPase_I PF01496.14 gi|110667836|ref|YP_657647.1| - 0.48 8.2 2.0 0.53 8.0 1.4 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family TMF_DNA_bd PF12329.3 gi|110667836|ref|YP_657647.1| - 0.52 10.1 6.1 0.76 9.6 2.1 2.5 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding TMF_TATA_bd PF12325.3 gi|110667836|ref|YP_657647.1| - 0.55 9.9 6.8 1 9.1 3.3 1.9 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF2067 PF09840.4 gi|110667836|ref|YP_657647.1| - 0.68 9.4 5.4 4.7 6.6 0.1 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2067) APG6 PF04111.7 gi|110667836|ref|YP_657647.1| - 0.83 8.6 5.7 0.97 8.4 4.0 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 HAUS6_N PF14661.1 gi|110667836|ref|YP_657647.1| - 0.97 8.7 3.2 1.4 8.1 2.2 1.3 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus DivIVA PF05103.8 gi|110667836|ref|YP_657647.1| - 1.3 9.0 8.9 2.6 8.0 6.2 1.5 1 1 0 1 1 1 0 DivIVA protein DUF2802 PF10975.3 gi|110667836|ref|YP_657647.1| - 1.6 8.5 4.6 17 5.2 3.2 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2802) HisKA PF00512.20 gi|110667836|ref|YP_657647.1| - 3 7.8 5.3 13 5.9 2.4 2.6 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain CoA_binding_2 PF13380.1 gi|110667837|ref|YP_657648.1| - 2.2e-32 111.6 0.1 2.8e-32 111.2 0.0 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|110667837|ref|YP_657648.1| - 0.00057 20.3 0.1 0.001 19.5 0.0 1.4 1 0 0 1 1 1 1 CoA binding domain UbiA PF01040.13 gi|110667838|ref|YP_657649.1| - 7.4e-39 133.5 23.3 9.3e-39 133.1 16.2 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family FKBP_C PF00254.23 gi|110667840|ref|YP_657651.1| - 1.5e-19 69.8 0.1 2.2e-19 69.2 0.1 1.3 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase YajC PF02699.10 gi|110667840|ref|YP_657651.1| - 0.18 11.4 0.9 0.54 9.9 0.3 2.0 2 0 0 2 2 2 0 Preprotein translocase subunit HTH_12 PF08461.5 gi|110667841|ref|YP_657652.1| - 0.0013 18.4 0.0 0.0024 17.5 0.0 1.6 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_24 PF13412.1 gi|110667841|ref|YP_657652.1| - 0.0025 17.1 0.1 0.0039 16.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding PHR PF08005.7 gi|110667841|ref|YP_657652.1| - 0.016 15.3 0.1 0.018 15.2 0.0 1.0 1 0 0 1 1 1 0 PHR domain MotA_activ PF09114.5 gi|110667841|ref|YP_657652.1| - 0.035 13.8 0.1 0.041 13.6 0.1 1.1 1 0 0 1 1 1 0 Transcription factor MotA, activation domain Phage_rep_org_N PF09681.5 gi|110667841|ref|YP_657652.1| - 0.048 13.2 0.1 0.083 12.4 0.0 1.5 1 1 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF2513 PF10711.4 gi|110667841|ref|YP_657652.1| - 0.067 13.2 0.0 0.12 12.5 0.0 1.4 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_5 PF01022.15 gi|110667841|ref|YP_657652.1| - 0.082 12.5 0.1 0.18 11.4 0.1 1.5 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF2680 PF10925.3 gi|110667841|ref|YP_657652.1| - 0.086 12.7 0.3 0.18 11.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2680) Matrilin_ccoil PF10393.4 gi|110667841|ref|YP_657652.1| - 0.09 12.1 1.1 0.15 11.4 0.2 1.7 2 0 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin DUF977 PF06163.6 gi|110667841|ref|YP_657652.1| - 0.12 12.0 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) Ion_trans_2 PF07885.11 gi|110667842|ref|YP_657653.1| - 5.1e-12 45.3 1.1 5.1e-12 45.3 0.8 2.8 2 1 1 3 3 3 1 Ion channel Ion_trans PF00520.26 gi|110667842|ref|YP_657653.1| - 6.9e-11 41.7 7.3 6.9e-11 41.7 5.1 2.1 2 1 0 2 2 2 1 Ion transport protein DZR PF12773.2 gi|110667842|ref|YP_657653.1| - 0.0045 16.7 2.1 0.0075 16.0 1.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|110667842|ref|YP_657653.1| - 0.014 14.5 3.0 0.023 13.9 2.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.4 gi|110667842|ref|YP_657653.1| - 0.18 11.5 2.1 0.43 10.3 1.5 1.6 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|110667842|ref|YP_657653.1| - 2.3 7.8 5.2 8.4 6.0 3.5 1.9 1 1 0 1 1 1 0 zinc-ribbon domain ABC2_membrane_5 PF13346.1 gi|110667842|ref|YP_657653.1| - 4.1 6.6 8.1 0.22 10.7 0.4 2.1 2 1 0 2 2 2 0 ABC-2 family transporter protein zf-CCHC PF00098.18 gi|110667842|ref|YP_657653.1| - 9.1 6.4 7.1 4.5 7.3 0.4 2.2 2 0 0 2 2 2 0 Zinc knuckle zf-C2H2 PF00096.21 gi|110667843|ref|YP_657654.1| - 0.021 15.1 1.1 0.052 13.9 0.1 2.1 1 1 1 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_6 PF13912.1 gi|110667843|ref|YP_657654.1| - 0.025 14.4 0.2 0.043 13.7 0.1 1.4 1 0 0 1 1 1 0 C2H2-type zinc finger PNP_UDP_1 PF01048.15 gi|110667845|ref|YP_657656.1| - 1.4e-25 89.6 0.1 1.7e-25 89.3 0.1 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily HpaP PF09483.5 gi|110667847|ref|YP_657658.1| - 0.0088 16.0 3.1 0.0088 16.0 2.1 1.5 2 0 0 2 2 2 1 Type III secretion protein (HpaP) TrmB PF01978.14 gi|110667849|ref|YP_657660.1| - 0.00037 20.1 0.0 0.0005 19.7 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|110667849|ref|YP_657660.1| - 0.0016 18.7 0.0 0.0024 18.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Frankia_peptide PF14407.1 gi|110667849|ref|YP_657660.1| - 0.002 17.8 0.2 0.058 13.1 0.0 2.2 2 0 0 2 2 2 1 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. HTH_20 PF12840.2 gi|110667849|ref|YP_657660.1| - 0.0037 17.0 0.0 0.0045 16.7 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|110667849|ref|YP_657660.1| - 0.009 15.6 0.1 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|110667849|ref|YP_657660.1| - 0.069 12.9 0.0 0.4 10.4 0.0 1.9 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family HemN_C PF06969.11 gi|110667849|ref|YP_657660.1| - 0.071 13.1 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain TrmB PF01978.14 gi|110667850|ref|YP_657661.1| - 5e-12 45.3 0.1 1.3e-11 43.9 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|110667850|ref|YP_657661.1| - 5.4e-08 32.5 0.0 1.1e-07 31.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|110667850|ref|YP_657661.1| - 6.8e-07 28.8 0.1 2.7e-06 26.9 0.0 2.1 2 1 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|110667850|ref|YP_657661.1| - 3.1e-06 26.4 0.0 9.7e-06 24.8 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|110667850|ref|YP_657661.1| - 4.9e-06 26.1 0.0 1.1e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|110667850|ref|YP_657661.1| - 1.5e-05 24.6 0.0 3.4e-05 23.4 0.0 1.6 1 1 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|110667850|ref|YP_657661.1| - 1.6e-05 24.4 0.0 3.2e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|110667850|ref|YP_657661.1| - 1.7e-05 24.3 0.0 4.6e-05 22.9 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_29 PF13551.1 gi|110667850|ref|YP_657661.1| - 0.00039 20.5 0.0 0.00098 19.2 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_DeoR PF08220.7 gi|110667850|ref|YP_657661.1| - 0.0005 19.5 0.0 0.0011 18.4 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.1 gi|110667850|ref|YP_657661.1| - 0.001 19.3 0.0 0.0024 18.1 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|110667850|ref|YP_657661.1| - 0.0012 18.8 0.0 0.0048 16.8 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain FaeA PF04703.7 gi|110667850|ref|YP_657661.1| - 0.006 16.7 0.0 0.012 15.7 0.0 1.4 1 0 0 1 1 1 1 FaeA-like protein PadR PF03551.9 gi|110667850|ref|YP_657661.1| - 0.0087 15.8 0.1 0.017 14.8 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Fe_dep_repress PF01325.14 gi|110667850|ref|YP_657661.1| - 0.018 14.9 0.0 0.039 13.8 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TetR_N PF00440.18 gi|110667850|ref|YP_657661.1| - 0.023 14.3 0.0 0.054 13.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_39 PF14090.1 gi|110667850|ref|YP_657661.1| - 0.029 13.8 0.0 0.071 12.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_17 PF12728.2 gi|110667850|ref|YP_657661.1| - 0.03 14.5 0.0 0.16 12.2 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|110667850|ref|YP_657661.1| - 0.032 14.3 0.0 0.061 13.4 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_41 PF14502.1 gi|110667850|ref|YP_657661.1| - 0.073 12.6 0.0 0.74 9.4 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain FeoC PF09012.5 gi|110667850|ref|YP_657661.1| - 0.074 12.7 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator Ribosomal_S25 PF03297.10 gi|110667850|ref|YP_657661.1| - 0.077 13.0 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 S25 ribosomal protein GntR PF00392.16 gi|110667850|ref|YP_657661.1| - 0.1 12.0 0.0 0.23 10.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Mga PF05043.8 gi|110667850|ref|YP_657661.1| - 0.11 12.7 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 Mga helix-turn-helix domain Rrf2 PF02082.15 gi|110667850|ref|YP_657661.1| - 0.12 12.5 0.0 0.34 11.0 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator DUF1814 PF08843.6 gi|110667851|ref|YP_657662.1| - 3.3e-18 66.3 0.0 3.7e-18 66.1 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF1814) NTP_transf_5 PF14907.1 gi|110667851|ref|YP_657662.1| - 0.1 11.8 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised nucleotidyltransferase TrmB PF01978.14 gi|110667852|ref|YP_657663.1| - 1.7e-10 40.4 0.1 4.2e-10 39.2 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|110667852|ref|YP_657663.1| - 3.2e-06 26.8 0.0 8.5e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|110667852|ref|YP_657663.1| - 1.7e-05 24.1 0.0 0.00012 21.3 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|110667852|ref|YP_657663.1| - 3.9e-05 23.2 0.0 0.00011 21.7 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family F-112 PF09645.5 gi|110667852|ref|YP_657663.1| - 0.00038 20.3 0.0 0.22 11.4 0.0 2.2 2 0 0 2 2 2 2 F-112 protein MarR_2 PF12802.2 gi|110667852|ref|YP_657663.1| - 0.0031 17.1 0.4 0.028 14.0 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|110667852|ref|YP_657663.1| - 0.0076 15.8 0.1 0.039 13.5 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain PadR PF03551.9 gi|110667852|ref|YP_657663.1| - 0.044 13.5 0.0 0.15 11.8 0.0 2.0 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family HTH_DeoR PF08220.7 gi|110667852|ref|YP_657663.1| - 0.063 12.8 0.0 0.18 11.3 0.0 1.8 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Penicillinase_R PF03965.11 gi|110667852|ref|YP_657663.1| - 0.082 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_29 PF13551.1 gi|110667852|ref|YP_657663.1| - 0.085 13.0 0.0 0.21 11.7 0.0 1.7 1 1 0 2 2 2 0 Winged helix-turn helix TFIIE_alpha PF02002.12 gi|110667852|ref|YP_657663.1| - 0.088 12.3 0.1 0.43 10.1 0.0 2.0 2 1 0 2 2 2 0 TFIIE alpha subunit RP-C PF03428.8 gi|110667852|ref|YP_657663.1| - 0.14 11.6 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain Rrf2 PF02082.15 gi|110667852|ref|YP_657663.1| - 0.14 12.3 0.0 4.7 7.3 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator DUF1030 PF06270.6 gi|110667854|ref|YP_657665.1| - 0.055 13.0 0.0 0.14 11.6 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1030) NTP_transf_2 PF01909.18 gi|110667855|ref|YP_657666.1| - 1.4e-09 38.1 0.2 3.2e-09 36.9 0.1 1.8 2 0 0 2 2 2 1 Nucleotidyltransferase domain MarR_2 PF12802.2 gi|110667855|ref|YP_657666.1| - 9.2e-07 28.4 0.0 2.5e-06 27.0 0.0 1.7 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|110667855|ref|YP_657666.1| - 0.00022 20.6 0.0 0.00055 19.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.1 gi|110667855|ref|YP_657666.1| - 0.021 14.1 0.0 0.047 13.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|110667855|ref|YP_657666.1| - 0.021 14.4 0.0 0.078 12.6 0.0 1.9 2 0 0 2 2 2 0 HTH domain DNA_pol_B_palm PF14792.1 gi|110667855|ref|YP_657666.1| - 0.04 13.9 0.0 0.08 12.9 0.0 1.5 1 0 0 1 1 1 0 DNA polymerase beta palm Rrf2 PF02082.15 gi|110667855|ref|YP_657666.1| - 0.042 13.9 0.0 0.078 13.0 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator Adenyl_cycl_N PF12633.2 gi|110667855|ref|YP_657666.1| - 0.14 11.6 0.0 0.29 10.6 0.0 1.5 1 0 0 1 1 1 0 Adenylate cyclase NT domain Cep57_MT_bd PF06657.8 gi|110667856|ref|YP_657667.1| - 0.0061 16.4 0.1 0.53 10.2 0.1 2.1 1 1 1 2 2 2 2 Centrosome microtubule-binding domain of Cep57 DUF3485 PF11984.3 gi|110667856|ref|YP_657667.1| - 0.1 11.6 0.0 0.13 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3485) Methyltransf_21 PF05050.7 gi|110667857|ref|YP_657668.1| - 1.4e-24 86.9 0.1 1.7e-24 86.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|110667857|ref|YP_657668.1| - 3.3e-06 27.6 0.0 4.1e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain V_cholerae_RfbT PF05575.6 gi|110667857|ref|YP_657668.1| - 1.7e-05 24.0 0.0 2.2e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein Met_10 PF02475.11 gi|110667857|ref|YP_657668.1| - 3.7e-05 23.4 0.1 8.5e-05 22.2 0.1 1.6 1 1 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.10 gi|110667857|ref|YP_657668.1| - 0.0011 18.4 0.0 0.0065 15.8 0.0 1.9 1 1 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.9 gi|110667857|ref|YP_657668.1| - 0.0012 18.2 0.0 0.0022 17.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|110667857|ref|YP_657668.1| - 0.0037 16.4 0.1 0.005 16.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.1 gi|110667857|ref|YP_657668.1| - 0.026 14.2 0.0 0.034 13.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain NCKAP5 PF15246.1 gi|110667857|ref|YP_657668.1| - 0.058 12.7 0.0 0.21 10.9 0.0 1.7 1 1 0 1 1 1 0 Nck-associated protein 5, Peripheral clock protein Methyltransf_26 PF13659.1 gi|110667857|ref|YP_657668.1| - 0.061 13.3 0.0 0.074 13.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|110667857|ref|YP_657668.1| - 0.063 12.8 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.15 gi|110667857|ref|YP_657668.1| - 0.12 11.3 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase HicB PF05534.7 gi|110667859|ref|YP_657670.1| - 0.0013 18.2 0.1 0.34 10.5 0.0 2.2 2 0 0 2 2 2 2 HicB family HTH_16 PF12645.2 gi|110667859|ref|YP_657670.1| - 0.037 13.9 0.1 12 5.9 0.1 2.7 1 1 2 3 3 3 0 Helix-turn-helix domain Rifin_STEVOR PF02009.11 gi|110667859|ref|YP_657670.1| - 0.058 13.0 0.1 0.073 12.7 0.1 1.2 1 0 0 1 1 1 0 Rifin/stevor family Tub_2 PF04525.7 gi|110667860|ref|YP_657671.1| - 3.7e-08 32.9 1.2 6.7e-06 25.6 0.6 2.9 1 1 1 2 2 2 2 Tubby C 2 Scramblase PF03803.10 gi|110667860|ref|YP_657671.1| - 0.064 12.3 0.1 4.6 6.2 0.0 2.5 1 1 0 2 2 2 0 Scramblase DUF4621 PF15414.1 gi|110667861|ref|YP_657672.1| - 0.04 12.6 0.0 0.045 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4621) HATPase_c PF02518.21 gi|110667862|ref|YP_657673.1| - 1.9e-16 59.7 0.4 4.4e-16 58.5 0.3 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|110667862|ref|YP_657673.1| - 2.6e-15 56.4 0.1 6.3e-15 55.1 0.1 1.7 1 0 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|110667862|ref|YP_657673.1| - 1.5e-13 50.5 1.6 3.4e-13 49.3 0.2 2.4 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|110667862|ref|YP_657673.1| - 5.5e-08 32.5 0.2 1.5e-07 31.2 0.1 1.8 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|110667862|ref|YP_657673.1| - 1.5e-05 24.6 0.0 5.2e-05 22.9 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.1 gi|110667862|ref|YP_657673.1| - 0.00027 21.2 0.4 0.00074 19.8 0.1 1.9 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.1 gi|110667862|ref|YP_657673.1| - 0.00028 20.5 0.3 0.00054 19.6 0.2 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|110667862|ref|YP_657673.1| - 0.0019 18.1 0.1 0.013 15.5 0.0 2.4 2 1 0 2 2 2 1 PAS fold Glyco_hydro_31 PF01055.21 gi|110667863|ref|YP_657674.1| - 1.9e-109 366.4 0.1 2.4e-109 366.1 0.1 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.1 gi|110667863|ref|YP_657674.1| - 2.1e-14 53.1 0.0 4.5e-13 48.8 0.0 2.5 2 0 0 2 2 2 1 Galactose mutarotase-like SGL PF08450.7 gi|110667864|ref|YP_657675.1| - 7.1e-07 28.8 1.4 0.001 18.5 0.8 3.1 1 1 1 2 2 2 2 SMP-30/Gluconolaconase/LRE-like region Reg_prop PF07494.6 gi|110667864|ref|YP_657675.1| - 0.01 15.7 0.1 2.5 8.4 0.0 4.1 4 0 0 4 4 4 0 Two component regulator propeller NHL PF01436.16 gi|110667864|ref|YP_657675.1| - 0.11 12.4 11.4 30 4.8 0.0 5.4 6 0 0 6 6 6 0 NHL repeat PrgH PF09480.5 gi|110667864|ref|YP_657675.1| - 0.2 10.4 0.1 11 4.8 0.0 2.7 3 0 0 3 3 3 0 Type III secretion system protein PrgH-EprH (PrgH) SBBP PF06739.6 gi|110667864|ref|YP_657675.1| - 1.3 8.8 7.5 31 4.4 0.0 4.4 5 0 0 5 5 5 0 Beta-propeller repeat Sensor PF13796.1 gi|110667866|ref|YP_657677.1| - 2.3e-35 121.8 20.6 1.4e-34 119.3 10.4 1.6 1 1 1 2 2 2 2 Putative sensor DUF3487 PF11990.3 gi|110667866|ref|YP_657677.1| - 2.8 7.3 10.6 0.75 9.2 0.9 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3487) PRA1 PF03208.14 gi|110667866|ref|YP_657677.1| - 6.4 6.0 11.0 0.99 8.7 1.4 2.2 2 0 0 2 2 2 0 PRA1 family protein DUF2250 PF10007.4 gi|110667867|ref|YP_657678.1| - 7.4e-62 205.2 4.0 9.3e-31 105.6 0.2 2.5 2 1 0 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2250) FbpA PF05833.6 gi|110667867|ref|YP_657678.1| - 2.3e-06 26.4 1.8 1.5e-05 23.7 0.2 2.1 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) HTH_Crp_2 PF13545.1 gi|110667867|ref|YP_657678.1| - 0.0059 16.3 0.7 0.15 11.8 0.0 2.9 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain DUF4423 PF14394.1 gi|110667867|ref|YP_657678.1| - 0.0072 15.8 0.0 0.3 10.6 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) HTH_27 PF13463.1 gi|110667867|ref|YP_657678.1| - 0.052 13.8 1.5 0.85 9.9 0.1 3.1 3 1 0 3 3 3 0 Winged helix DNA-binding domain Tropomyosin_1 PF12718.2 gi|110667867|ref|YP_657678.1| - 3.4 7.5 7.6 1.4 8.7 1.5 2.8 2 1 1 3 3 3 0 Tropomyosin like Usp PF00582.21 gi|110667868|ref|YP_657679.1| - 1.6e-10 41.3 0.4 2.4e-10 40.7 0.3 1.3 1 1 0 1 1 1 1 Universal stress protein family Spermine_synth PF01564.12 gi|110667870|ref|YP_657681.1| - 2.3e-16 59.5 0.0 3.6e-16 58.8 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_25 PF13649.1 gi|110667870|ref|YP_657681.1| - 0.018 15.3 0.0 0.037 14.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|110667870|ref|YP_657681.1| - 0.037 13.3 0.0 0.063 12.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|110667870|ref|YP_657681.1| - 0.087 13.4 0.0 0.16 12.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|110667870|ref|YP_657681.1| - 0.1 12.1 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF2617 PF10936.3 gi|110667871|ref|YP_657682.1| - 4.3e-05 23.1 0.2 0.00012 21.7 0.1 1.7 1 1 0 1 1 1 1 Protein of unknown function DUF2617 Pentapeptide_3 PF13576.1 gi|110667872|ref|YP_657683.1| - 1.7e-28 98.1 98.1 2.8e-07 30.3 9.9 11.1 4 2 8 14 14 14 12 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.11 gi|110667872|ref|YP_657683.1| - 8.9e-06 25.3 6.2 8.9e-06 25.3 4.3 2.2 2 0 0 2 2 2 1 Ion channel DUF1673 PF07895.6 gi|110667872|ref|YP_657683.1| - 0.47 9.9 2.8 0.85 9.1 2.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) DUF3060 PF11259.3 gi|110667873|ref|YP_657684.1| - 4.9e-05 22.8 0.8 0.0003 20.3 0.1 2.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3060) DZR PF12773.2 gi|110667873|ref|YP_657684.1| - 0.051 13.4 0.3 0.1 12.4 0.2 1.5 1 0 0 1 1 1 0 Double zinc ribbon FdhE PF04216.7 gi|110667873|ref|YP_657684.1| - 0.14 11.8 0.0 0.19 11.4 0.0 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-ribbon_3 PF13248.1 gi|110667873|ref|YP_657684.1| - 0.17 11.1 0.3 0.17 11.1 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|110667873|ref|YP_657684.1| - 0.22 11.0 1.4 0.45 10.0 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.6 gi|110667873|ref|YP_657684.1| - 0.32 11.1 6.4 6.6 6.9 1.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Ogr_Delta PF04606.7 gi|110667873|ref|YP_657684.1| - 0.37 10.4 3.1 1.4 8.6 2.1 1.9 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger DUF4396 PF14342.1 gi|110667874|ref|YP_657685.1| - 3.3 7.8 7.3 4.5 7.3 1.9 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4396) Gly-zipper_Omp PF13488.1 gi|110667874|ref|YP_657685.1| - 6.3 6.5 18.7 0.19 11.4 5.9 2.9 3 0 0 3 3 3 0 Glycine zipper Viral_NABP PF05515.6 gi|110667876|ref|YP_657687.1| - 0.39 10.9 3.9 0.68 10.2 2.7 1.3 1 0 0 1 1 1 0 Viral nucleic acid binding Calici_coat PF00915.15 gi|110667878|ref|YP_657689.1| - 0.094 11.6 0.1 0.23 10.3 0.1 1.7 2 0 0 2 2 2 0 Calicivirus coat protein PMSR PF01625.16 gi|110667879|ref|YP_657690.1| - 1.1e-36 126.0 0.0 1.5e-36 125.6 0.0 1.2 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase SelR PF01641.13 gi|110667880|ref|YP_657691.1| - 4.6e-47 158.7 0.1 5.2e-47 158.5 0.1 1.0 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.9 gi|110667880|ref|YP_657691.1| - 0.0081 16.1 0.1 0.018 15.0 0.1 1.6 1 1 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly DUF2296 PF10058.4 gi|110667880|ref|YP_657691.1| - 0.022 14.5 0.1 0.45 10.3 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) HNH_5 PF14279.1 gi|110667880|ref|YP_657691.1| - 0.024 14.6 0.9 0.095 12.7 0.1 2.0 2 0 0 2 2 2 0 HNH endonuclease Cytochrome_C554 PF13435.1 gi|110667880|ref|YP_657691.1| - 0.054 13.5 0.2 0.099 12.6 0.1 1.5 1 1 0 1 1 1 0 Cytochrome c554 and c-prime Endonuclease_7 PF02945.10 gi|110667880|ref|YP_657691.1| - 0.093 12.4 0.3 0.47 10.1 0.1 1.9 2 0 0 2 2 2 0 Recombination endonuclease VII CutA1 PF03091.10 gi|110667881|ref|YP_657692.1| - 8e-26 89.6 0.1 8.6e-26 89.5 0.1 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein PAS_9 PF13426.1 gi|110667882|ref|YP_657693.1| - 1.3e-15 57.6 0.0 1.5e-15 57.4 0.0 1.1 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|110667882|ref|YP_657693.1| - 1.9e-07 30.8 0.0 3.1e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.6 gi|110667882|ref|YP_657693.1| - 2.4e-06 27.5 0.3 3.7e-06 26.9 0.0 1.4 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|110667882|ref|YP_657693.1| - 1.2e-05 24.9 0.0 1.8e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|110667882|ref|YP_657693.1| - 0.12 12.4 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 PAS fold Peptidase_S15 PF02129.13 gi|110667883|ref|YP_657694.1| - 4.8e-50 170.4 0.5 7e-50 169.9 0.3 1.3 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) PepX_C PF08530.5 gi|110667883|ref|YP_657694.1| - 1e-44 153.0 0.3 1.8e-44 152.2 0.2 1.4 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Abhydrolase_6 PF12697.2 gi|110667883|ref|YP_657694.1| - 2.2e-06 27.7 0.6 4.2e-06 26.8 0.4 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|110667883|ref|YP_657694.1| - 3.7e-06 26.3 0.5 8.7e-06 25.1 0.3 1.5 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|110667883|ref|YP_657694.1| - 5.4e-05 22.9 0.0 0.00012 21.9 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Xan_ur_permease PF00860.15 gi|110667884|ref|YP_657695.1| - 2.2e-72 243.6 47.8 4.2e-72 242.7 33.1 1.4 1 1 0 1 1 1 1 Permease family Amidohydro_4 PF13147.1 gi|110667886|ref|YP_657697.1| - 2.3e-27 96.7 0.0 8.4e-27 94.8 0.0 1.9 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|110667886|ref|YP_657697.1| - 9e-15 54.2 0.1 2.4e-14 52.8 0.1 1.8 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|110667886|ref|YP_657697.1| - 1.6e-10 41.1 0.1 0.00028 20.6 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_3 PF07969.6 gi|110667886|ref|YP_657697.1| - 8.5e-06 25.2 0.0 0.013 14.7 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family IclR PF01614.13 gi|110667887|ref|YP_657698.1| - 4.7e-31 107.1 0.0 7.9e-31 106.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|110667887|ref|YP_657698.1| - 1.1e-10 40.8 0.1 6.4e-10 38.4 0.0 2.4 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|110667887|ref|YP_657698.1| - 1.3e-07 30.8 0.0 2.8e-07 29.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|110667887|ref|YP_657698.1| - 1.4e-07 31.0 0.0 2.6e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|110667887|ref|YP_657698.1| - 9.9e-06 25.1 0.0 6e-05 22.6 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|110667887|ref|YP_657698.1| - 1e-05 25.1 0.0 2e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|110667887|ref|YP_657698.1| - 2e-05 24.2 0.0 5.1e-05 22.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4423 PF14394.1 gi|110667887|ref|YP_657698.1| - 0.00075 19.0 0.0 0.0017 17.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_DeoR PF08220.7 gi|110667887|ref|YP_657698.1| - 0.0014 18.1 0.0 0.0028 17.1 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|110667887|ref|YP_657698.1| - 0.002 17.5 1.2 0.0042 16.5 0.0 2.3 3 0 0 3 3 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|110667887|ref|YP_657698.1| - 0.0067 16.0 0.0 0.016 14.8 0.0 1.7 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.14 gi|110667887|ref|YP_657698.1| - 0.0079 16.1 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|110667887|ref|YP_657698.1| - 0.0083 16.2 0.0 0.023 14.8 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_45 PF14947.1 gi|110667887|ref|YP_657698.1| - 0.011 15.5 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_40 PF14493.1 gi|110667887|ref|YP_657698.1| - 0.016 15.4 0.0 0.036 14.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.4 gi|110667887|ref|YP_657698.1| - 0.017 14.9 0.0 0.035 14.0 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.2 gi|110667887|ref|YP_657698.1| - 0.018 14.6 0.0 0.071 12.7 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_34 PF13601.1 gi|110667887|ref|YP_657698.1| - 0.032 14.2 0.0 0.06 13.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|110667887|ref|YP_657698.1| - 0.045 13.3 0.0 0.22 11.1 0.0 2.1 2 0 0 2 2 2 0 LexA DNA binding domain DUF2042 PF09743.4 gi|110667887|ref|YP_657698.1| - 0.073 12.3 0.0 0.1 11.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2042) EAP30 PF04157.11 gi|110667887|ref|YP_657698.1| - 0.092 11.8 0.0 0.17 11.0 0.0 1.4 1 0 0 1 1 1 0 EAP30/Vps36 family Cyclase PF04199.8 gi|110667888|ref|YP_657699.1| - 1.1e-33 116.3 0.6 1.4e-33 115.9 0.4 1.2 1 0 0 1 1 1 1 Putative cyclase ADH_N PF08240.7 gi|110667889|ref|YP_657700.1| - 5.2e-25 87.3 0.1 8.9e-25 86.5 0.1 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|110667889|ref|YP_657700.1| - 4.5e-15 55.3 0.3 9.4e-15 54.3 0.1 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|110667889|ref|YP_657700.1| - 2.6e-07 31.5 0.1 1.1e-06 29.5 0.1 2.0 2 0 0 2 2 2 1 Zinc-binding dehydrogenase adh_short PF00106.20 gi|110667889|ref|YP_657700.1| - 0.00084 19.2 0.8 0.002 18.0 0.5 1.6 1 0 0 1 1 1 1 short chain dehydrogenase AlaDh_PNT_C PF01262.16 gi|110667889|ref|YP_657700.1| - 0.002 17.7 0.1 0.0053 16.3 0.1 1.6 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|110667889|ref|YP_657700.1| - 0.0035 17.0 0.2 0.0064 16.1 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.12 gi|110667889|ref|YP_657700.1| - 0.015 14.2 0.5 0.023 13.5 0.1 1.5 2 0 0 2 2 2 0 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|110667889|ref|YP_657700.1| - 0.046 13.7 0.3 0.1 12.6 0.2 1.6 1 0 0 1 1 1 0 NADH(P)-binding 2-Hacid_dh_C PF02826.14 gi|110667889|ref|YP_657700.1| - 0.064 12.4 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NmrA PF05368.8 gi|110667889|ref|YP_657700.1| - 0.071 12.3 0.4 0.11 11.7 0.3 1.3 1 0 0 1 1 1 0 NmrA-like family Epimerase PF01370.16 gi|110667889|ref|YP_657700.1| - 0.094 12.1 0.2 0.15 11.4 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family CoA_transf_3 PF02515.12 gi|110667890|ref|YP_657701.1| - 1.9e-64 216.4 0.0 2.5e-64 216.0 0.0 1.2 1 0 0 1 1 1 1 CoA-transferase family III XdhC_C PF13478.1 gi|110667891|ref|YP_657702.1| - 2.6e-29 102.2 0.1 5.7e-29 101.1 0.0 1.6 2 0 0 2 2 2 1 XdhC Rossmann domain XdhC_CoxI PF02625.11 gi|110667891|ref|YP_657702.1| - 5.3e-26 90.0 0.7 5.8e-21 73.8 0.1 2.4 2 0 0 2 2 2 2 XdhC and CoxI family FAD_binding_5 PF00941.16 gi|110667892|ref|YP_657703.1| - 5.4e-45 152.8 0.0 7.6e-45 152.4 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|110667892|ref|YP_657703.1| - 2.2e-18 66.0 0.1 3.3e-18 65.5 0.1 1.3 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Fer2_2 PF01799.15 gi|110667893|ref|YP_657704.1| - 3.7e-33 113.2 0.1 3.7e-33 113.2 0.1 1.6 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|110667893|ref|YP_657704.1| - 7.9e-07 28.7 0.4 7.9e-07 28.7 0.3 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|110667893|ref|YP_657704.1| - 3.3e-05 23.6 0.1 6.3e-05 22.7 0.1 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|110667893|ref|YP_657704.1| - 0.028 14.2 0.4 0.8 9.5 0.1 2.2 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain TSC22 PF01166.13 gi|110667893|ref|YP_657704.1| - 0.082 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 TSC-22/dip/bun family Ald_Xan_dh_C2 PF02738.13 gi|110667894|ref|YP_657705.1| - 3e-107 359.2 0.0 1.9e-106 356.6 0.0 1.9 1 1 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|110667894|ref|YP_657705.1| - 2.9e-20 72.4 0.0 1.1e-19 70.5 0.0 1.9 2 0 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DUF4278 PF14105.1 gi|110667894|ref|YP_657705.1| - 0.1 12.5 0.1 1.7 8.6 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4278) NTP_transf_3 PF12804.2 gi|110667895|ref|YP_657706.1| - 1.2e-29 103.4 0.1 1.4e-29 103.1 0.1 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|110667895|ref|YP_657706.1| - 4.4e-05 23.1 1.0 6.3e-05 22.5 0.7 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|110667895|ref|YP_657706.1| - 0.035 13.7 0.0 0.044 13.4 0.0 1.1 1 0 0 1 1 1 0 Cytidylyltransferase STAS PF01740.16 gi|110667895|ref|YP_657706.1| - 0.12 11.7 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 STAS domain HxlR PF01638.12 gi|110667896|ref|YP_657707.1| - 3.8e-11 42.4 0.3 1.9e-10 40.2 0.1 2.0 2 0 0 2 2 2 1 HxlR-like helix-turn-helix Response_reg PF00072.19 gi|110667896|ref|YP_657707.1| - 1.3e-08 34.7 0.1 2.4e-08 33.9 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain DUF4364 PF14277.1 gi|110667896|ref|YP_657707.1| - 0.00011 21.8 1.3 0.001 18.7 0.2 2.3 1 1 1 2 2 2 1 Domain of unknown function (DUF4364) HTH_45 PF14947.1 gi|110667896|ref|YP_657707.1| - 0.00038 20.2 0.2 0.00099 18.8 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DUF2114 PF09887.4 gi|110667896|ref|YP_657707.1| - 0.0086 14.4 0.1 0.012 13.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) Penicillinase_R PF03965.11 gi|110667896|ref|YP_657707.1| - 0.5 10.4 3.8 0.82 9.7 0.2 2.5 2 1 0 2 2 2 0 Penicillinase repressor Usp PF00582.21 gi|110667897|ref|YP_657708.1| - 3e-08 33.9 1.8 0.00026 21.1 0.0 2.4 2 0 0 2 2 2 2 Universal stress protein family Tmemb_170 PF10190.4 gi|110667898|ref|YP_657709.1| - 0.00082 19.4 0.3 0.001 19.0 0.2 1.1 1 0 0 1 1 1 1 Putative transmembrane protein 170 7TMR-DISM_7TM PF07695.6 gi|110667898|ref|YP_657709.1| - 0.017 14.8 5.0 0.019 14.6 3.5 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling YesK PF14150.1 gi|110667898|ref|YP_657709.1| - 0.2 11.7 4.1 0.32 11.1 2.8 1.6 1 1 0 1 1 1 0 YesK-like protein HTH_20 PF12840.2 gi|110667899|ref|YP_657710.1| - 5.7e-07 29.2 0.0 9.6e-07 28.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|110667899|ref|YP_657710.1| - 3.7e-05 23.1 0.1 7.5e-05 22.1 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.7 gi|110667899|ref|YP_657710.1| - 0.00015 21.3 0.1 0.00027 20.5 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|110667899|ref|YP_657710.1| - 0.00032 20.0 0.1 0.00049 19.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FUR PF01475.14 gi|110667899|ref|YP_657710.1| - 0.0019 18.1 0.4 0.0024 17.7 0.3 1.3 1 1 0 1 1 1 1 Ferric uptake regulator family HTH_38 PF13936.1 gi|110667899|ref|YP_657710.1| - 0.0021 17.5 0.1 0.0051 16.3 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|110667899|ref|YP_657710.1| - 0.0025 17.3 0.0 0.0036 16.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|110667899|ref|YP_657710.1| - 0.01 15.5 0.1 0.017 14.8 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|110667899|ref|YP_657710.1| - 0.012 15.2 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_AsnC-type PF13404.1 gi|110667899|ref|YP_657710.1| - 0.022 14.2 0.0 0.035 13.6 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain T2SE PF00437.15 gi|110667899|ref|YP_657710.1| - 0.031 13.1 0.3 0.035 13.0 0.2 1.1 1 0 0 1 1 1 0 Type II/IV secretion system protein HTH_17 PF12728.2 gi|110667899|ref|YP_657710.1| - 0.074 13.3 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain ArsR PF09824.4 gi|110667899|ref|YP_657710.1| - 0.075 12.3 0.3 0.091 12.0 0.2 1.0 1 0 0 1 1 1 0 ArsR transcriptional regulator HTH_DeoR PF08220.7 gi|110667899|ref|YP_657710.1| - 0.11 12.0 0.1 0.25 10.9 0.1 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_28 PF13518.1 gi|110667899|ref|YP_657710.1| - 0.11 12.4 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|110667899|ref|YP_657710.1| - 0.12 12.0 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.15 gi|110667899|ref|YP_657710.1| - 0.15 11.7 0.2 0.58 9.8 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family LUC7 PF03194.10 gi|110667899|ref|YP_657710.1| - 0.21 11.1 2.8 0.25 10.8 1.9 1.0 1 0 0 1 1 1 0 LUC7 N_terminus DUF16 PF01519.11 gi|110667899|ref|YP_657710.1| - 1.9 8.7 5.0 3.5 7.8 1.9 1.9 1 1 1 2 2 2 0 Protein of unknown function DUF16 AA_permease_2 PF13520.1 gi|110667900|ref|YP_657711.1| - 4e-46 157.4 41.2 4.8e-46 157.1 28.5 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|110667900|ref|YP_657711.1| - 2e-39 135.2 40.2 2.7e-39 134.8 27.9 1.1 1 0 0 1 1 1 1 Amino acid permease TrkA_N PF02254.13 gi|110667901|ref|YP_657712.1| - 4.3e-23 81.5 0.2 6.7e-23 80.8 0.2 1.3 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_10 PF13460.1 gi|110667901|ref|YP_657712.1| - 2e-07 31.1 0.1 3.8e-07 30.2 0.1 1.5 1 1 0 1 1 1 1 NADH(P)-binding TrkA_C PF02080.16 gi|110667901|ref|YP_657712.1| - 1.2e-06 28.0 0.2 5.8e-06 25.8 0.0 2.1 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|110667901|ref|YP_657712.1| - 3.2e-05 24.1 0.0 5.5e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|110667901|ref|YP_657712.1| - 0.00018 21.2 0.1 0.00032 20.3 0.0 1.7 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|110667901|ref|YP_657712.1| - 0.0002 21.7 0.1 0.0006 20.1 0.0 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NmrA PF05368.8 gi|110667901|ref|YP_657712.1| - 0.00023 20.5 0.0 0.00033 19.9 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family FAD_binding_3 PF01494.14 gi|110667901|ref|YP_657712.1| - 0.00029 20.0 0.0 0.00049 19.2 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain 2-Hacid_dh_C PF02826.14 gi|110667901|ref|YP_657712.1| - 0.0003 20.0 0.0 0.00051 19.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|110667901|ref|YP_657712.1| - 0.00042 19.7 0.0 0.00077 18.9 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA XdhC_C PF13478.1 gi|110667901|ref|YP_657712.1| - 0.0047 17.2 0.0 0.0091 16.3 0.0 1.5 1 1 0 1 1 1 1 XdhC Rossmann domain Shikimate_DH PF01488.15 gi|110667901|ref|YP_657712.1| - 0.0072 16.4 0.1 0.013 15.6 0.0 1.6 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase adh_short PF00106.20 gi|110667901|ref|YP_657712.1| - 0.0074 16.2 0.2 0.013 15.4 0.1 1.5 1 1 0 1 1 1 1 short chain dehydrogenase Thi4 PF01946.12 gi|110667901|ref|YP_657712.1| - 0.0097 15.0 0.0 1.3 8.1 0.0 2.1 1 1 1 2 2 2 2 Thi4 family DAO PF01266.19 gi|110667901|ref|YP_657712.1| - 0.01 14.7 0.0 0.012 14.5 0.0 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|110667901|ref|YP_657712.1| - 0.03 14.0 0.0 0.051 13.3 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CPSase_L_chain PF00289.17 gi|110667901|ref|YP_657712.1| - 0.051 13.6 0.0 0.077 13.1 0.0 1.4 1 1 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_binding_2 PF03446.10 gi|110667901|ref|YP_657712.1| - 0.055 13.3 0.0 0.078 12.8 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Saccharop_dh PF03435.13 gi|110667901|ref|YP_657712.1| - 0.057 12.3 0.0 0.072 12.0 0.0 1.1 1 0 0 1 1 1 0 Saccharopine dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|110667901|ref|YP_657712.1| - 0.073 12.4 0.4 0.16 11.3 0.0 1.8 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AdoHcyase_NAD PF00670.16 gi|110667901|ref|YP_657712.1| - 0.09 12.6 0.0 0.43 10.4 0.0 1.9 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Nitro_FeMo-Co PF02579.12 gi|110667901|ref|YP_657712.1| - 0.093 12.8 0.0 1.5 8.9 0.0 2.5 2 1 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor TrkA_N PF02254.13 gi|110667902|ref|YP_657713.1| - 3.3e-39 133.4 9.8 3.5e-19 68.9 1.3 2.8 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|110667902|ref|YP_657713.1| - 2.4e-27 94.3 0.4 2.7e-12 46.0 0.0 3.9 4 0 0 4 4 4 2 TrkA-C domain NAD_binding_7 PF13241.1 gi|110667902|ref|YP_657713.1| - 0.00042 20.5 2.5 0.00049 20.2 0.1 2.2 2 1 0 2 2 2 1 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|110667902|ref|YP_657713.1| - 0.018 14.0 0.0 0.03 13.3 0.0 1.4 1 0 0 1 1 1 0 FAD binding domain AlaDh_PNT_C PF01262.16 gi|110667902|ref|YP_657713.1| - 0.048 13.2 0.1 0.13 11.7 0.0 1.7 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.16 gi|110667902|ref|YP_657713.1| - 0.12 12.2 2.6 0.14 11.9 0.4 2.2 2 1 0 2 2 2 0 ThiF family NAD_binding_2 PF03446.10 gi|110667902|ref|YP_657713.1| - 0.14 11.9 0.9 0.23 11.2 0.1 1.8 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Fibritin_C PF07921.7 gi|110667902|ref|YP_657713.1| - 0.35 10.8 2.2 1.5 8.8 0.2 2.7 2 1 1 3 3 3 0 Fibritin C-terminal region DUF2892 PF11127.3 gi|110667903|ref|YP_657714.1| - 6e-09 35.5 0.7 6.4e-09 35.5 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) Nramp PF01566.13 gi|110667904|ref|YP_657715.1| - 1.6e-58 198.2 35.1 1.6e-58 198.2 24.3 1.9 1 1 1 2 2 2 1 Natural resistance-associated macrophage protein CitMHS PF03600.11 gi|110667905|ref|YP_657716.1| - 1.2e-47 162.2 0.0 8.1e-43 146.3 0.0 1.9 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.14 gi|110667905|ref|YP_657716.1| - 1.5e-26 93.3 34.9 4e-16 58.9 9.7 2.8 2 1 0 2 2 2 2 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.16 gi|110667905|ref|YP_657716.1| - 4.3e-21 74.2 1.4 7.5e-11 41.4 0.1 2.4 2 0 0 2 2 2 2 TrkA-C domain Erv26 PF04148.8 gi|110667905|ref|YP_657716.1| - 0.023 14.0 4.7 1.7 7.9 0.0 2.4 2 0 0 2 2 2 0 Transmembrane adaptor Erv26 DUF2371 PF10177.4 gi|110667905|ref|YP_657716.1| - 0.16 11.8 0.3 1.2 9.0 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) TrkA_N PF02254.13 gi|110667906|ref|YP_657717.1| - 9.9e-25 86.8 1.9 1.1e-24 86.7 0.5 1.7 2 0 0 2 2 1 1 TrkA-N domain NAD_binding_7 PF13241.1 gi|110667906|ref|YP_657717.1| - 1.8e-08 34.5 0.1 3e-08 33.8 0.1 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_C PF02080.16 gi|110667906|ref|YP_657717.1| - 5.3e-06 25.9 0.7 2e-05 24.0 0.1 2.1 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_10 PF13460.1 gi|110667906|ref|YP_657717.1| - 8.3e-06 25.9 0.2 1.2e-05 25.3 0.1 1.2 1 0 0 1 1 1 1 NADH(P)-binding DAO PF01266.19 gi|110667906|ref|YP_657717.1| - 2.5e-05 23.3 0.4 2.9e-05 23.1 0.3 1.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase CPSase_L_chain PF00289.17 gi|110667906|ref|YP_657717.1| - 3.9e-05 23.7 0.1 7.2e-05 22.8 0.1 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain FAD_binding_2 PF00890.19 gi|110667906|ref|YP_657717.1| - 4.8e-05 22.3 0.2 5.2e-05 22.2 0.2 1.1 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.14 gi|110667906|ref|YP_657717.1| - 0.00013 21.1 0.5 0.0011 18.1 0.0 2.1 1 1 1 2 2 2 1 FAD binding domain adh_short PF00106.20 gi|110667906|ref|YP_657717.1| - 0.00024 21.0 1.4 0.00036 20.4 0.9 1.4 1 1 0 1 1 1 1 short chain dehydrogenase Pyr_redox PF00070.22 gi|110667906|ref|YP_657717.1| - 0.00028 21.2 0.2 0.00057 20.2 0.2 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|110667906|ref|YP_657717.1| - 0.00085 19.2 0.2 0.00099 19.0 0.1 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.12 gi|110667906|ref|YP_657717.1| - 0.00094 19.5 1.0 0.015 15.6 0.2 2.7 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|110667906|ref|YP_657717.1| - 0.0028 17.3 0.3 0.0054 16.4 0.1 1.5 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|110667906|ref|YP_657717.1| - 0.0033 16.8 0.0 0.0055 16.0 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_8 PF13450.1 gi|110667906|ref|YP_657717.1| - 0.0043 17.0 0.1 0.0087 16.0 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|110667906|ref|YP_657717.1| - 0.01 14.9 0.0 0.014 14.4 0.0 1.3 1 0 0 1 1 1 0 Thi4 family KR PF08659.5 gi|110667906|ref|YP_657717.1| - 0.015 14.9 0.2 0.021 14.4 0.1 1.3 1 0 0 1 1 1 0 KR domain ApbA PF02558.11 gi|110667906|ref|YP_657717.1| - 0.018 14.5 0.0 0.029 13.8 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.14 gi|110667906|ref|YP_657717.1| - 0.02 14.0 0.1 0.031 13.4 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|110667906|ref|YP_657717.1| - 0.021 14.2 0.0 0.03 13.6 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Shikimate_DH PF01488.15 gi|110667906|ref|YP_657717.1| - 0.024 14.7 0.1 0.042 13.9 0.1 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|110667906|ref|YP_657717.1| - 0.038 13.7 0.0 0.076 12.7 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HI0933_like PF03486.9 gi|110667906|ref|YP_657717.1| - 0.055 11.9 0.1 0.078 11.4 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein XdhC_C PF13478.1 gi|110667906|ref|YP_657717.1| - 0.075 13.3 0.1 0.19 12.0 0.0 1.7 2 0 0 2 2 2 0 XdhC Rossmann domain NAD_binding_2 PF03446.10 gi|110667906|ref|YP_657717.1| - 0.087 12.6 0.0 0.17 11.7 0.0 1.5 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.17 gi|110667906|ref|YP_657717.1| - 0.1 13.1 0.0 0.17 12.3 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Saccharop_dh PF03435.13 gi|110667906|ref|YP_657717.1| - 0.13 11.2 0.1 0.17 10.8 0.1 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Trp_halogenase PF04820.9 gi|110667906|ref|YP_657717.1| - 0.13 10.8 0.1 0.17 10.4 0.0 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Usp PF00582.21 gi|110667907|ref|YP_657718.1| - 9.7e-33 113.3 0.1 1.1e-32 113.1 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF2088 PF09861.4 gi|110667908|ref|YP_657719.1| - 2.3e-05 23.5 0.0 3.6e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) UBA_4 PF14555.1 gi|110667909|ref|YP_657720.1| - 0.11 12.0 0.1 0.18 11.3 0.1 1.3 1 0 0 1 1 1 0 UBA-like domain Usp PF00582.21 gi|110667910|ref|YP_657721.1| - 2.5e-56 189.7 4.9 5.8e-28 97.8 0.1 2.1 2 0 0 2 2 2 2 Universal stress protein family FR47 PF08445.5 gi|110667910|ref|YP_657721.1| - 0.081 12.6 0.0 0.24 11.1 0.0 1.9 1 1 0 1 1 1 0 FR47-like protein DUF21 PF01595.15 gi|110667911|ref|YP_657722.1| - 1.5e-50 171.0 0.3 2.1e-50 170.5 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|110667911|ref|YP_657722.1| - 7.4e-20 70.5 0.7 7.4e-20 70.5 0.5 1.9 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.23 gi|110667911|ref|YP_657722.1| - 2.5e-15 55.9 1.8 4.9e-07 29.4 0.4 2.7 2 0 0 2 2 2 2 CBS domain PHB_acc_N PF07879.6 gi|110667911|ref|YP_657722.1| - 0.048 13.3 0.4 4.9 6.9 0.0 2.7 2 0 0 2 2 2 0 PHB/PHA accumulation regulator DNA-binding domain GerE PF00196.14 gi|110667912|ref|YP_657723.1| - 6.2e-08 31.8 0.0 1.1e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_38 PF13936.1 gi|110667912|ref|YP_657723.1| - 0.0028 17.1 0.1 0.01 15.3 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|110667912|ref|YP_657723.1| - 0.0095 15.3 0.0 0.02 14.3 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 DUF2481 PF10654.4 gi|110667912|ref|YP_657723.1| - 0.012 15.2 0.8 0.014 15.0 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2481) HTH_24 PF13412.1 gi|110667912|ref|YP_657723.1| - 0.019 14.3 0.0 0.037 13.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_10 PF04967.7 gi|110667912|ref|YP_657723.1| - 0.056 13.0 0.0 0.16 11.5 0.0 1.8 1 0 0 1 1 1 0 HTH DNA binding domain HTH_23 PF13384.1 gi|110667912|ref|YP_657723.1| - 0.06 13.0 0.0 0.17 11.6 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain DUF4379 PF14311.1 gi|110667912|ref|YP_657723.1| - 0.095 12.5 8.2 0.11 12.3 1.4 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4379) Hormone_1 PF00103.15 gi|110667912|ref|YP_657723.1| - 0.2 10.9 2.2 0.27 10.5 0.0 2.0 2 1 0 2 2 2 0 Somatotropin hormone family Rubredoxin PF00301.15 gi|110667912|ref|YP_657723.1| - 0.56 10.1 5.1 4.2 7.3 0.3 2.5 2 1 0 2 2 2 0 Rubredoxin OrfB_Zn_ribbon PF07282.6 gi|110667912|ref|YP_657723.1| - 0.87 9.2 3.7 2.9 7.6 2.5 1.9 1 1 1 2 2 2 0 Putative transposase DNA-binding domain PHD PF00628.24 gi|110667912|ref|YP_657723.1| - 1.6 8.4 6.4 9.1 6.0 1.8 2.3 1 1 1 2 2 2 0 PHD-finger MoeA_N PF03453.12 gi|110667913|ref|YP_657724.1| - 0.015 14.7 0.0 0.026 13.8 0.0 1.7 1 1 0 1 1 1 0 MoeA N-terminal region (domain I and II) Arginase PF00491.16 gi|110667913|ref|YP_657724.1| - 0.13 11.5 0.1 0.17 11.1 0.0 1.1 1 0 0 1 1 1 0 Arginase family AhpC-TSA PF00578.16 gi|110667914|ref|YP_657725.1| - 3.9e-28 97.6 0.0 5e-28 97.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|110667914|ref|YP_657725.1| - 2.1e-13 50.0 0.0 2.4e-13 49.8 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|110667914|ref|YP_657725.1| - 2.3e-05 24.2 0.0 2.6e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme Phospho_p8 PF10195.4 gi|110667914|ref|YP_657725.1| - 0.0041 16.9 0.0 0.0073 16.1 0.0 1.3 1 0 0 1 1 1 1 DNA-binding nuclear phosphoprotein p8 RtcB PF01139.12 gi|110667915|ref|YP_657726.1| - 1.9e-109 366.4 0.0 2.4e-109 366.1 0.0 1.1 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB adh_short PF00106.20 gi|110667917|ref|YP_657728.1| - 5.7e-37 127.1 2.1 7.9e-37 126.7 1.5 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|110667917|ref|YP_657728.1| - 1.6e-20 73.9 0.2 2e-20 73.5 0.1 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|110667917|ref|YP_657728.1| - 5.3e-19 68.5 0.7 6.4e-19 68.3 0.5 1.1 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|110667917|ref|YP_657728.1| - 2.1e-10 40.9 2.7 4e-10 40.0 1.9 1.5 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|110667917|ref|YP_657728.1| - 9e-05 22.0 0.5 0.00081 18.8 0.1 2.2 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.14 gi|110667917|ref|YP_657728.1| - 0.00014 20.9 0.5 0.00027 20.0 0.3 1.5 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Shikimate_DH PF01488.15 gi|110667917|ref|YP_657728.1| - 0.0031 17.6 0.1 0.0061 16.6 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Eno-Rase_NADH_b PF12242.3 gi|110667917|ref|YP_657728.1| - 0.0036 17.0 0.1 0.0036 17.0 0.1 2.1 3 0 0 3 3 3 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NmrA PF05368.8 gi|110667917|ref|YP_657728.1| - 0.012 14.9 1.3 3 7.0 0.2 2.4 2 0 0 2 2 2 0 NmrA-like family 2-Hacid_dh_C PF02826.14 gi|110667917|ref|YP_657728.1| - 0.027 13.6 0.0 0.044 12.9 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HEM4 PF02602.10 gi|110667917|ref|YP_657728.1| - 0.055 12.7 0.2 0.23 10.6 0.1 1.9 1 1 1 2 2 2 0 Uroporphyrinogen-III synthase HemD ABC_tran PF00005.22 gi|110667918|ref|YP_657729.1| - 4.9e-32 111.0 0.1 1.3e-31 109.7 0.0 1.8 2 0 0 2 2 2 1 ABC transporter ABC_membrane PF00664.18 gi|110667918|ref|YP_657729.1| - 5.2e-23 81.8 8.0 8e-23 81.2 5.6 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.14 gi|110667918|ref|YP_657729.1| - 4.2e-06 26.1 1.7 8.3e-05 21.9 1.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|110667918|ref|YP_657729.1| - 1.1e-05 25.5 1.3 0.0019 18.2 0.1 2.9 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|110667918|ref|YP_657729.1| - 4.3e-05 24.3 0.2 0.00036 21.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|110667918|ref|YP_657729.1| - 0.0052 16.4 0.1 0.011 15.4 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|110667918|ref|YP_657729.1| - 0.0057 16.7 0.1 0.07 13.2 0.0 2.5 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|110667918|ref|YP_657729.1| - 0.007 16.5 0.0 0.023 14.8 0.0 1.9 2 0 0 2 2 1 1 RNA helicase AAA_24 PF13479.1 gi|110667918|ref|YP_657729.1| - 0.0082 15.7 0.0 0.016 14.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|110667918|ref|YP_657729.1| - 0.0096 15.0 0.8 0.024 13.7 0.0 2.0 3 0 0 3 3 3 1 Zeta toxin AAA_16 PF13191.1 gi|110667918|ref|YP_657729.1| - 0.01 15.8 0.1 0.032 14.2 0.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.1 gi|110667918|ref|YP_657729.1| - 0.019 15.2 0.6 0.075 13.3 0.1 2.2 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|110667918|ref|YP_657729.1| - 0.019 14.8 0.0 0.072 12.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|110667918|ref|YP_657729.1| - 0.033 14.1 0.0 0.21 11.5 0.0 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase DUF258 PF03193.11 gi|110667918|ref|YP_657729.1| - 0.039 13.1 0.0 0.082 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 PRK PF00485.13 gi|110667918|ref|YP_657729.1| - 0.055 13.0 0.1 0.18 11.3 0.0 1.9 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family DUF87 PF01935.12 gi|110667918|ref|YP_657729.1| - 0.056 13.2 0.9 0.21 11.3 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function DUF87 AAA_29 PF13555.1 gi|110667918|ref|YP_657729.1| - 0.096 12.2 0.0 0.24 10.9 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain N6_N4_Mtase PF01555.13 gi|110667919|ref|YP_657730.1| - 1.1e-41 142.7 2.1 1.3e-41 142.5 1.5 1.0 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|110667919|ref|YP_657730.1| - 1.1e-06 28.6 0.0 0.04 13.9 0.0 2.2 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_18 PF12847.2 gi|110667919|ref|YP_657730.1| - 0.0005 20.6 0.0 0.0041 17.6 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|110667919|ref|YP_657730.1| - 0.0027 17.3 0.0 0.019 14.5 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|110667919|ref|YP_657730.1| - 0.021 15.2 0.0 6.2 7.3 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|110667919|ref|YP_657730.1| - 0.033 14.5 0.0 0.5 10.7 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_4 PF02390.12 gi|110667919|ref|YP_657730.1| - 0.046 12.7 0.0 0.12 11.4 0.0 1.6 1 1 0 1 1 1 0 Putative methyltransferase HABP4_PAI-RBP1 PF04774.10 gi|110667919|ref|YP_657730.1| - 5.5 7.5 8.3 6.7 7.2 1.1 2.9 3 0 0 3 3 3 0 Hyaluronan / mRNA binding family Aldedh PF00171.17 gi|110667921|ref|YP_657732.1| - 5.4e-173 575.5 0.0 6.2e-173 575.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family SfsA PF03749.8 gi|110667922|ref|YP_657733.1| - 1.7e-52 178.0 0.0 2.1e-52 177.7 0.0 1.0 1 0 0 1 1 1 1 Sugar fermentation stimulation protein NMT1 PF09084.6 gi|110667923|ref|YP_657734.1| - 6e-08 32.5 0.0 9.9e-08 31.8 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.1 gi|110667923|ref|YP_657734.1| - 8e-06 25.4 0.0 1.1e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.15 gi|110667923|ref|YP_657734.1| - 0.005 16.1 0.0 0.0081 15.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 VitK2_biosynth PF02621.9 gi|110667923|ref|YP_657734.1| - 0.0074 15.5 0.1 0.045 12.9 0.0 2.1 2 0 0 2 2 2 1 Menaquinone biosynthesis TAT_signal PF10518.4 gi|110667923|ref|YP_657734.1| - 0.017 15.0 0.0 0.049 13.6 0.0 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Phosphonate-bd PF12974.2 gi|110667923|ref|YP_657734.1| - 0.061 12.6 0.0 0.076 12.3 0.0 1.3 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein BPD_transp_1 PF00528.17 gi|110667924|ref|YP_657735.1| - 1e-16 61.0 13.1 1e-16 61.0 9.0 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|110667925|ref|YP_657736.1| - 4.9e-32 111.1 0.0 1.5e-31 109.5 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|110667925|ref|YP_657736.1| - 4e-08 33.5 0.0 2.8e-06 27.5 0.0 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|110667925|ref|YP_657736.1| - 0.00047 19.4 0.2 0.2 10.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|110667925|ref|YP_657736.1| - 0.0012 18.1 0.0 0.0019 17.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|110667925|ref|YP_657736.1| - 0.0046 16.4 0.1 0.0098 15.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|110667925|ref|YP_657736.1| - 0.0067 16.4 1.4 0.047 13.6 1.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|110667925|ref|YP_657736.1| - 0.0068 16.6 0.2 0.035 14.3 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|110667925|ref|YP_657736.1| - 0.0097 15.8 0.2 0.083 12.8 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.1 gi|110667925|ref|YP_657736.1| - 0.019 14.7 0.1 0.09 12.5 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain AAA_18 PF13238.1 gi|110667925|ref|YP_657736.1| - 0.03 14.6 0.0 0.069 13.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|110667925|ref|YP_657736.1| - 0.041 12.5 0.1 0.058 12.0 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_17 PF13207.1 gi|110667925|ref|YP_657736.1| - 0.041 14.6 0.4 0.095 13.5 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|110667925|ref|YP_657736.1| - 0.043 13.7 0.0 0.26 11.2 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|110667925|ref|YP_657736.1| - 0.048 13.9 0.4 0.069 13.4 0.3 1.4 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|110667925|ref|YP_657736.1| - 0.048 13.5 0.3 0.19 11.6 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|110667925|ref|YP_657736.1| - 0.064 12.2 0.0 1.1 8.2 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain NB-ARC PF00931.17 gi|110667925|ref|YP_657736.1| - 0.07 11.9 0.1 0.11 11.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Mg_chelatase PF01078.16 gi|110667925|ref|YP_657736.1| - 0.083 12.0 0.1 0.49 9.5 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI PduV-EutP PF10662.4 gi|110667925|ref|YP_657736.1| - 0.097 12.1 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_22 PF13401.1 gi|110667925|ref|YP_657736.1| - 0.099 12.7 0.2 0.16 12.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|110667925|ref|YP_657736.1| - 0.11 11.4 0.1 0.17 10.7 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_25 PF13481.1 gi|110667925|ref|YP_657736.1| - 0.14 11.5 0.1 0.82 9.0 0.0 2.0 2 1 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|110667926|ref|YP_657737.1| - 3.3e-14 52.8 19.4 3.3e-14 52.8 13.4 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF2678 PF10856.3 gi|110667926|ref|YP_657737.1| - 1.3 8.7 7.3 14 5.4 5.0 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2678) AIRC PF00731.15 gi|110667927|ref|YP_657738.1| - 1.1e-17 63.7 3.8 1.9e-17 62.9 2.7 1.4 1 0 0 1 1 1 1 AIR carboxylase QRPTase_C PF01729.14 gi|110667928|ref|YP_657739.1| - 4.4e-20 71.8 0.0 6.2e-20 71.4 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|110667928|ref|YP_657739.1| - 1.2e-05 25.0 0.0 5.2e-05 22.9 0.0 2.1 2 1 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain Saccharop_dh PF03435.13 gi|110667929|ref|YP_657740.1| - 4.1e-14 52.3 0.0 6.3e-14 51.7 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase Epimerase PF01370.16 gi|110667929|ref|YP_657740.1| - 0.00031 20.2 0.0 0.00068 19.1 0.0 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|110667929|ref|YP_657740.1| - 0.00034 20.6 0.1 0.0032 17.4 0.0 2.3 2 0 0 2 2 2 1 NADH(P)-binding 5HT_transporter PF03491.8 gi|110667929|ref|YP_657740.1| - 0.031 14.3 0.1 0.14 12.3 0.0 2.2 2 0 0 2 2 2 0 Serotonin (5-HT) neurotransmitter transporter, N-terminus 3Beta_HSD PF01073.14 gi|110667929|ref|YP_657740.1| - 0.034 12.8 0.0 0.05 12.3 0.0 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.8 gi|110667929|ref|YP_657740.1| - 0.035 13.3 0.0 0.07 12.3 0.0 1.5 1 1 0 1 1 1 0 NmrA-like family Polysacc_synt_2 PF02719.10 gi|110667929|ref|YP_657740.1| - 0.072 11.9 0.0 0.1 11.4 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Helicase_C_2 PF13307.1 gi|110667930|ref|YP_657741.1| - 1.7e-24 86.6 0.0 3.2e-24 85.7 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|110667930|ref|YP_657741.1| - 1.8e-13 50.2 0.1 5.8e-12 45.3 0.0 2.2 2 0 0 2 2 2 1 DEAD_2 DEAD PF00270.24 gi|110667930|ref|YP_657741.1| - 3e-07 30.0 0.2 0.019 14.4 0.0 2.8 3 0 0 3 3 3 2 DEAD/DEAH box helicase ResIII PF04851.10 gi|110667930|ref|YP_657741.1| - 0.00074 19.4 0.1 0.2 11.4 0.0 2.4 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit AAA_30 PF13604.1 gi|110667930|ref|YP_657741.1| - 0.0072 15.9 1.0 0.32 10.5 0.0 2.7 3 0 0 3 3 3 1 AAA domain DUF2075 PF09848.4 gi|110667930|ref|YP_657741.1| - 0.022 13.7 0.0 1.7 7.5 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.1 gi|110667930|ref|YP_657741.1| - 0.052 13.3 0.2 0.19 11.4 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain AAA_11 PF13086.1 gi|110667930|ref|YP_657741.1| - 0.059 12.9 0.0 0.25 10.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|110667930|ref|YP_657741.1| - 0.072 12.3 0.0 0.17 11.0 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein DDE_3 PF13358.1 gi|110667931|ref|YP_657742.1| - 1.4e-10 41.0 0.0 1.9e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|110667931|ref|YP_657742.1| - 0.00066 19.7 0.0 0.00094 19.2 0.0 1.1 1 0 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|110667931|ref|YP_657742.1| - 0.0082 15.3 0.0 0.011 14.9 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease HJURP_mid PF12346.3 gi|110667931|ref|YP_657742.1| - 0.044 13.9 0.0 0.06 13.4 0.0 1.2 1 0 0 1 1 1 0 Holliday junction recognition protein-associated repeat DUF35 PF01796.12 gi|110667932|ref|YP_657743.1| - 0.0095 16.1 0.1 0.014 15.5 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF2248 PF10005.4 gi|110667932|ref|YP_657743.1| - 0.045 12.6 0.4 0.047 12.6 0.3 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2248) Ribosomal_L37e PF01907.14 gi|110667932|ref|YP_657743.1| - 0.053 13.3 1.2 0.089 12.6 0.8 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e DNA_RNApol_7kD PF03604.8 gi|110667932|ref|YP_657743.1| - 0.083 12.3 1.7 0.37 10.2 0.1 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF35_N PF12172.3 gi|110667932|ref|YP_657743.1| - 0.14 12.1 0.3 0.3 11.0 0.2 1.5 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Thiolase_N PF00108.18 gi|110667933|ref|YP_657744.1| - 2.3e-09 36.6 3.7 2.7e-09 36.4 0.6 2.0 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|110667933|ref|YP_657744.1| - 1.4e-06 27.7 0.0 3.5e-06 26.4 0.0 1.8 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III PF08545.5 gi|110667933|ref|YP_657744.1| - 1e-05 25.0 0.4 0.04 13.5 0.0 2.8 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ketoacyl-synt PF00109.21 gi|110667933|ref|YP_657744.1| - 3.1e-05 23.6 1.3 0.0013 18.2 2.1 2.4 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain MFS_1 PF07690.11 gi|110667934|ref|YP_657745.1| - 2.5e-33 115.2 40.4 2.5e-33 115.2 28.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Baculo_11_kDa PF06143.6 gi|110667934|ref|YP_657745.1| - 7.7 5.9 7.7 27 4.2 4.3 2.5 2 1 0 2 2 2 0 Baculovirus 11 kDa family ADH_zinc_N_2 PF13602.1 gi|110667935|ref|YP_657746.1| - 1.9e-19 70.7 0.4 3.8e-19 69.8 0.3 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.21 gi|110667935|ref|YP_657746.1| - 2.4e-19 69.1 1.0 3.9e-19 68.4 0.7 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|110667935|ref|YP_657746.1| - 5.6e-12 45.3 0.1 1.3e-09 37.7 0.0 2.4 1 1 1 2 2 2 2 Alcohol dehydrogenase GroES-like domain CoA_transf_3 PF02515.12 gi|110667936|ref|YP_657747.1| - 8.5e-69 230.6 0.0 1.2e-68 230.0 0.0 1.2 1 0 0 1 1 1 1 CoA-transferase family III Peptidase_A24 PF01478.13 gi|110667936|ref|YP_657747.1| - 0.13 12.4 0.2 0.22 11.6 0.1 1.3 1 0 0 1 1 1 0 Type IV leader peptidase family ABC_tran PF00005.22 gi|110667937|ref|YP_657748.1| - 1.2e-30 106.5 0.0 2.6e-30 105.4 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110667937|ref|YP_657748.1| - 6.8e-07 29.5 0.0 0.0033 17.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|110667937|ref|YP_657748.1| - 4.5e-05 23.3 0.0 0.0032 17.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|110667937|ref|YP_657748.1| - 0.0011 18.0 0.0 0.11 11.4 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|110667937|ref|YP_657748.1| - 0.0058 16.7 0.3 0.025 14.7 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|110667937|ref|YP_657748.1| - 0.0072 16.5 0.1 0.017 15.3 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TOBE_2 PF08402.5 gi|110667937|ref|YP_657748.1| - 0.013 15.4 0.0 0.14 12.2 0.0 2.6 2 0 0 2 2 2 0 TOBE domain Rad17 PF03215.10 gi|110667937|ref|YP_657748.1| - 0.016 13.9 0.0 0.026 13.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_16 PF13191.1 gi|110667937|ref|YP_657748.1| - 0.023 14.7 0.0 0.049 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|110667937|ref|YP_657748.1| - 0.047 13.3 0.0 0.093 12.4 0.0 1.5 2 0 0 2 2 2 0 Archaeal ATPase AAA_23 PF13476.1 gi|110667937|ref|YP_657748.1| - 0.054 13.8 0.0 0.091 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|110667937|ref|YP_657748.1| - 0.063 12.8 0.0 0.14 11.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|110667937|ref|YP_657748.1| - 0.098 12.4 0.1 0.25 11.1 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain BPD_transp_1 PF00528.17 gi|110667938|ref|YP_657749.1| - 9.1e-15 54.6 17.6 9.1e-15 54.6 12.2 2.8 1 1 2 3 3 3 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|110667939|ref|YP_657750.1| - 7.6e-20 71.1 16.4 7.6e-20 71.1 11.4 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.20 gi|110667940|ref|YP_657751.1| - 1.3e-13 51.3 0.7 3.2e-13 50.1 0.5 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|110667940|ref|YP_657751.1| - 0.033 14.1 0.2 0.08 12.9 0.1 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence IclR PF01614.13 gi|110667941|ref|YP_657752.1| - 1.6e-33 115.1 0.1 5.2e-33 113.4 0.0 1.7 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|110667941|ref|YP_657752.1| - 6.6e-12 44.8 0.0 1.7e-11 43.5 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|110667941|ref|YP_657752.1| - 2e-07 30.2 0.0 3.8e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|110667941|ref|YP_657752.1| - 3.6e-07 29.7 0.1 9.9e-07 28.3 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.11 gi|110667941|ref|YP_657752.1| - 1.6e-06 27.5 0.0 5.8e-06 25.7 0.0 1.9 2 0 0 2 2 2 1 LexA DNA binding domain MarR PF01047.17 gi|110667941|ref|YP_657752.1| - 4.5e-06 26.2 0.0 9.4e-06 25.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|110667941|ref|YP_657752.1| - 1.1e-05 25.0 0.0 2.4e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|110667941|ref|YP_657752.1| - 1.2e-05 24.8 0.0 7.9e-05 22.2 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|110667941|ref|YP_657752.1| - 9.2e-05 22.0 0.1 0.00031 20.3 0.0 1.9 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.1 gi|110667941|ref|YP_657752.1| - 0.0001 22.5 0.2 0.035 14.4 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|110667941|ref|YP_657752.1| - 0.00018 21.1 0.0 0.00075 19.1 0.0 2.0 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_40 PF14493.1 gi|110667941|ref|YP_657752.1| - 0.0002 21.4 0.1 0.00052 20.1 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|110667941|ref|YP_657752.1| - 0.00027 20.8 0.1 0.00067 19.6 0.0 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.7 gi|110667941|ref|YP_657752.1| - 0.00084 18.7 0.1 0.0022 17.4 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Fe_dep_repress PF01325.14 gi|110667941|ref|YP_657752.1| - 0.001 18.9 0.1 0.0023 17.8 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|110667941|ref|YP_657752.1| - 0.0011 18.5 0.0 0.0022 17.5 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.1 gi|110667941|ref|YP_657752.1| - 0.002 17.6 0.5 0.0036 16.8 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|110667941|ref|YP_657752.1| - 0.0029 17.5 0.0 0.0053 16.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|110667941|ref|YP_657752.1| - 0.0034 17.4 0.1 0.008 16.2 0.1 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_Tnp_ISL3 PF13542.1 gi|110667941|ref|YP_657752.1| - 0.0056 15.8 0.1 0.013 14.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_36 PF13730.1 gi|110667941|ref|YP_657752.1| - 0.0077 16.3 0.0 0.052 13.6 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_9 PF08221.6 gi|110667941|ref|YP_657752.1| - 0.01 15.7 0.0 0.027 14.3 0.0 1.7 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_10 PF04967.7 gi|110667941|ref|YP_657752.1| - 0.012 15.2 0.1 0.029 13.9 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_DeoR PF08220.7 gi|110667941|ref|YP_657752.1| - 0.014 14.9 0.0 0.047 13.2 0.0 1.8 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain GerE PF00196.14 gi|110667941|ref|YP_657752.1| - 0.015 14.6 0.1 0.03 13.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family RP-C PF03428.8 gi|110667941|ref|YP_657752.1| - 0.015 14.7 0.0 0.16 11.3 0.0 2.2 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_AsnC-type PF13404.1 gi|110667941|ref|YP_657752.1| - 0.018 14.5 0.6 0.034 13.6 0.0 1.8 2 0 0 2 2 1 0 AsnC-type helix-turn-helix domain DUF2089 PF09862.4 gi|110667941|ref|YP_657752.1| - 0.091 12.5 0.8 9.6 6.0 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2089) TetR_N PF00440.18 gi|110667941|ref|YP_657752.1| - 0.11 12.1 0.2 0.88 9.2 0.0 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, tetR family B-block_TFIIIC PF04182.7 gi|110667941|ref|YP_657752.1| - 0.12 12.2 0.0 0.51 10.2 0.0 2.0 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC HTH_45 PF14947.1 gi|110667941|ref|YP_657752.1| - 0.16 11.8 0.9 0.63 9.8 0.0 2.3 3 0 0 3 3 3 0 Winged helix-turn-helix Metallophos_2 PF12850.2 gi|110667943|ref|YP_657754.1| - 6.2e-05 22.8 0.2 8.2e-05 22.4 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|110667943|ref|YP_657754.1| - 0.00016 21.1 2.8 0.00032 20.1 1.9 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase HTH_12 PF08461.5 gi|110667944|ref|YP_657755.1| - 0.017 14.8 0.1 0.019 14.6 0.1 1.2 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HARE-HTH PF05066.8 gi|110667944|ref|YP_657755.1| - 0.077 13.3 0.0 0.089 13.1 0.0 1.2 1 0 0 1 1 1 0 HB1, ASXL, restriction endonuclease HTH domain Beta-Casp PF10996.3 gi|110667945|ref|YP_657756.1| - 4.4e-23 81.5 0.0 9e-23 80.5 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B_2 PF12706.2 gi|110667945|ref|YP_657756.1| - 5.7e-15 55.3 0.5 8.9e-14 51.4 0.3 2.2 2 1 1 3 3 3 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|110667945|ref|YP_657756.1| - 2e-12 47.1 1.8 4.1e-10 39.6 0.7 2.4 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|110667945|ref|YP_657756.1| - 2e-08 33.9 0.1 3.9e-08 32.9 0.0 1.5 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase PDEase_II PF02112.10 gi|110667945|ref|YP_657756.1| - 0.026 13.4 1.2 0.039 12.8 0.1 1.6 2 0 0 2 2 2 0 cAMP phosphodiesterases class-II AIRC PF00731.15 gi|110667945|ref|YP_657756.1| - 0.11 11.7 0.2 0.59 9.3 0.0 2.1 3 0 0 3 3 3 0 AIR carboxylase Flavi_glycoprot PF00869.15 gi|110667946|ref|YP_657757.1| - 0.0054 15.7 0.4 0.0065 15.4 0.3 1.1 1 0 0 1 1 1 1 Flavivirus glycoprotein, central and dimerisation domains FlgD_ig PF13860.1 gi|110667946|ref|YP_657757.1| - 0.016 14.9 0.2 0.076 12.7 0.0 2.3 1 1 1 2 2 2 0 FlgD Ig-like domain fn3 PF00041.16 gi|110667946|ref|YP_657757.1| - 0.021 14.9 1.9 0.029 14.4 0.6 1.7 2 0 0 2 2 2 0 Fibronectin type III domain I-set PF07679.11 gi|110667946|ref|YP_657757.1| - 0.072 12.9 2.3 0.18 11.7 0.2 2.1 2 0 0 2 2 2 0 Immunoglobulin I-set domain adh_short PF00106.20 gi|110667948|ref|YP_657759.1| - 2.5e-31 108.8 2.2 4.3e-31 108.0 1.5 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|110667948|ref|YP_657759.1| - 1.7e-13 50.6 0.5 2.7e-13 50.0 0.3 1.3 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|110667948|ref|YP_657759.1| - 3.6e-12 46.5 0.0 4.4e-12 46.2 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NAD_binding_10 PF13460.1 gi|110667948|ref|YP_657759.1| - 3.8e-05 23.7 3.6 0.00021 21.3 2.5 2.0 1 1 0 1 1 1 1 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|110667948|ref|YP_657759.1| - 0.00042 20.0 0.5 0.001 18.8 0.4 1.7 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Epimerase PF01370.16 gi|110667948|ref|YP_657759.1| - 0.0013 18.2 2.2 0.029 13.8 0.3 2.4 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|110667948|ref|YP_657759.1| - 0.013 14.3 0.0 0.02 13.8 0.0 1.3 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Shikimate_DH PF01488.15 gi|110667948|ref|YP_657759.1| - 0.019 15.1 0.4 0.052 13.6 0.2 1.8 1 1 1 2 2 2 0 Shikimate / quinate 5-dehydrogenase THF_DHG_CYH_C PF02882.14 gi|110667948|ref|YP_657759.1| - 0.038 13.0 0.3 0.07 12.1 0.2 1.4 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 2-Hacid_dh_C PF02826.14 gi|110667948|ref|YP_657759.1| - 0.04 13.0 0.1 0.064 12.3 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DFP PF04127.10 gi|110667948|ref|YP_657759.1| - 0.18 11.4 1.6 0.4 10.2 1.0 1.5 1 1 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Lysine_decarbox PF03641.9 gi|110667949|ref|YP_657760.1| - 6.5e-10 38.9 0.1 9.2e-10 38.4 0.1 1.2 1 0 0 1 1 1 1 Possible lysine decarboxylase Nuc_deoxyrib_tr PF05014.10 gi|110667949|ref|YP_657760.1| - 0.0098 15.7 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase DNA_processg_A PF02481.10 gi|110667949|ref|YP_657760.1| - 0.012 14.4 0.7 0.13 11.1 0.7 1.9 1 1 1 2 2 2 0 DNA recombination-mediator protein A AA_kinase PF00696.23 gi|110667949|ref|YP_657760.1| - 0.055 12.9 0.1 0.08 12.4 0.1 1.2 1 0 0 1 1 1 0 Amino acid kinase family DAGK_cat PF00781.19 gi|110667949|ref|YP_657760.1| - 1.3 8.4 6.2 4.4 6.7 0.3 2.4 2 1 0 2 2 2 0 Diacylglycerol kinase catalytic domain Fer2 PF00111.22 gi|110667950|ref|YP_657761.1| - 5.9e-15 54.7 0.3 9.1e-15 54.1 0.2 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|110667950|ref|YP_657761.1| - 0.049 13.4 0.1 0.11 12.2 0.1 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain GIDE PF12483.3 gi|110667951|ref|YP_657762.1| - 1.8e-05 24.1 0.2 0.11 11.8 0.0 2.4 2 0 0 2 2 2 2 E3 Ubiquitin ligase Polysacc_synt_2 PF02719.10 gi|110667952|ref|YP_657763.1| - 0.1 11.4 0.0 0.11 11.3 0.0 1.0 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|110667953|ref|YP_657764.1| - 1.9e-20 73.6 1.6 2.4e-20 73.3 0.3 1.7 2 0 0 2 2 2 1 NADH(P)-binding NmrA PF05368.8 gi|110667953|ref|YP_657764.1| - 3.1e-12 46.2 0.0 4.6e-12 45.6 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|110667953|ref|YP_657764.1| - 5.2e-08 32.6 0.1 1.1e-07 31.5 0.0 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|110667953|ref|YP_657764.1| - 0.00012 20.8 0.0 0.00017 20.3 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|110667953|ref|YP_657764.1| - 0.00073 18.5 0.0 0.0038 16.1 0.0 2.0 2 0 0 2 2 2 1 Male sterility protein Semialdhyde_dh PF01118.19 gi|110667953|ref|YP_657764.1| - 0.016 15.4 0.0 0.034 14.4 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.12 gi|110667953|ref|YP_657764.1| - 0.023 13.5 0.0 0.2 10.5 0.0 2.0 2 0 0 2 2 2 0 RmlD substrate binding domain DapB_N PF01113.15 gi|110667953|ref|YP_657764.1| - 0.058 13.3 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus ApbA PF02558.11 gi|110667953|ref|YP_657764.1| - 0.096 12.1 0.1 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Methyltransf_11 PF08241.7 gi|110667955|ref|YP_657766.1| - 7.7e-15 55.1 0.0 1.4e-14 54.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|110667955|ref|YP_657766.1| - 1.9e-13 50.4 0.0 2.7e-13 49.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|110667955|ref|YP_657766.1| - 4.6e-11 42.5 0.2 0.00032 20.3 0.0 2.6 2 1 0 2 2 2 2 Methyltransferase domain Methyltransf_8 PF05148.10 gi|110667955|ref|YP_657766.1| - 3.2e-10 40.0 0.0 5.6e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_18 PF12847.2 gi|110667955|ref|YP_657766.1| - 9.2e-07 29.4 0.6 6.2e-05 23.5 0.2 2.8 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|110667955|ref|YP_657766.1| - 3.9e-05 23.6 0.0 0.00026 21.0 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|110667955|ref|YP_657766.1| - 0.00011 22.4 0.2 0.006 16.9 0.1 2.6 2 1 0 2 2 2 1 Methyltransferase domain CMAS PF02353.15 gi|110667955|ref|YP_657766.1| - 0.00017 20.7 0.1 0.00049 19.2 0.0 1.7 2 1 0 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_12 PF08242.7 gi|110667955|ref|YP_657766.1| - 0.00069 20.0 0.0 0.021 15.2 0.0 2.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|110667955|ref|YP_657766.1| - 0.034 13.5 0.1 0.058 12.7 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_29 PF03141.11 gi|110667955|ref|YP_657766.1| - 0.09 11.0 0.0 0.1 10.8 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase PrmA PF06325.8 gi|110667955|ref|YP_657766.1| - 0.12 11.4 0.6 0.33 10.0 0.3 1.9 1 1 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.7 gi|110667955|ref|YP_657766.1| - 0.15 11.3 0.0 0.24 10.7 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Radical_SAM PF04055.16 gi|110667956|ref|YP_657767.1| - 1.9e-22 80.1 0.0 3e-22 79.5 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|110667956|ref|YP_657767.1| - 6.2e-08 32.6 0.0 1.3e-07 31.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|110667956|ref|YP_657767.1| - 1.4e-06 28.4 0.0 2.5e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Thioredoxin_3 PF13192.1 gi|110667957|ref|YP_657768.1| - 6.2e-05 22.7 0.0 7.7e-05 22.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain AhpC-TSA PF00578.16 gi|110667958|ref|YP_657769.1| - 1.2e-17 63.7 0.0 1.5e-17 63.4 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|110667958|ref|YP_657769.1| - 3.9e-11 42.6 0.0 4.8e-11 42.3 0.0 1.1 1 0 0 1 1 1 1 Redoxin UvdE PF03851.9 gi|110667959|ref|YP_657770.1| - 8.7e-50 169.2 0.0 1e-49 169.0 0.0 1.0 1 0 0 1 1 1 1 UV-endonuclease UvdE AP_endonuc_2 PF01261.19 gi|110667959|ref|YP_657770.1| - 4.5e-05 22.8 0.0 6.2e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel HypA PF01155.14 gi|110667960|ref|YP_657771.1| - 0.00026 20.6 1.0 0.00026 20.6 0.7 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|110667960|ref|YP_657771.1| - 0.00051 19.7 0.9 0.00059 19.6 0.6 1.1 1 0 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.1 gi|110667960|ref|YP_657771.1| - 0.0017 17.9 1.8 0.17 11.6 0.1 2.1 2 0 0 2 2 2 1 Nudix N-terminal TF_Zn_Ribbon PF08271.7 gi|110667960|ref|YP_657771.1| - 0.011 15.0 4.5 0.58 9.5 0.3 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding zf-RING_4 PF14570.1 gi|110667960|ref|YP_657771.1| - 0.012 15.2 0.5 0.015 14.8 0.4 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain DUF1936 PF09151.5 gi|110667960|ref|YP_657771.1| - 0.012 15.1 2.6 1.8 8.1 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) RNHCP PF12647.2 gi|110667960|ref|YP_657771.1| - 0.013 15.3 1.5 0.014 15.2 1.1 1.2 1 0 0 1 1 1 0 RNHCP domain zf-ribbon_3 PF13248.1 gi|110667960|ref|YP_657771.1| - 0.013 14.6 4.0 0.025 13.7 2.8 1.6 1 1 0 1 1 1 0 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|110667960|ref|YP_657771.1| - 0.022 14.5 0.8 0.025 14.3 0.6 1.1 1 0 0 1 1 1 0 zinc-ribbons NOB1_Zn_bind PF08772.6 gi|110667960|ref|YP_657771.1| - 0.024 14.4 0.5 0.029 14.2 0.4 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-C3HC4_3 PF13920.1 gi|110667960|ref|YP_657771.1| - 0.034 13.8 0.4 0.037 13.6 0.3 1.1 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Zn-ribbon_8 PF09723.5 gi|110667960|ref|YP_657771.1| - 0.038 13.9 4.5 0.28 11.1 3.4 1.9 1 1 1 2 2 2 0 Zinc ribbon domain DUF2072 PF09845.4 gi|110667960|ref|YP_657771.1| - 0.041 13.7 2.8 0.048 13.5 1.9 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) zinc_ribbon_2 PF13240.1 gi|110667960|ref|YP_657771.1| - 0.044 13.2 4.8 0.11 12.0 3.3 1.6 1 1 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|110667960|ref|YP_657771.1| - 0.047 13.3 1.1 0.051 13.2 0.8 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-IS66 PF13005.2 gi|110667960|ref|YP_657771.1| - 0.057 13.3 6.5 0.089 12.7 0.6 2.1 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-TFIIB PF13453.1 gi|110667960|ref|YP_657771.1| - 0.06 12.5 3.2 0.14 11.3 0.2 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger GCC2_GCC3 PF07699.8 gi|110667960|ref|YP_657771.1| - 0.069 12.7 1.9 0.1 12.2 1.3 1.3 1 1 0 1 1 1 0 GCC2 and GCC3 Prok-RING_1 PF14446.1 gi|110667960|ref|YP_657771.1| - 0.08 12.6 2.8 0.14 11.9 1.9 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 PhnA_Zn_Ribbon PF08274.7 gi|110667960|ref|YP_657771.1| - 0.09 12.5 3.0 4.3 7.1 0.3 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon RE_MamI PF09567.5 gi|110667960|ref|YP_657771.1| - 0.1 11.6 0.1 0.11 11.6 0.1 1.0 1 0 0 1 1 1 0 MamI restriction endonuclease zf-ISL3 PF14690.1 gi|110667960|ref|YP_657771.1| - 0.11 12.5 1.9 0.43 10.6 0.2 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF1272 PF06906.6 gi|110667960|ref|YP_657771.1| - 0.11 12.3 2.6 0.2 11.5 1.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) DnaJ_CXXCXGXG PF00684.14 gi|110667960|ref|YP_657771.1| - 0.13 12.3 4.7 0.32 11.0 3.5 1.3 1 1 0 1 1 1 0 DnaJ central domain Ogr_Delta PF04606.7 gi|110667960|ref|YP_657771.1| - 0.15 11.7 2.9 0.15 11.7 0.5 1.9 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-C4_Topoisom PF01396.14 gi|110667960|ref|YP_657771.1| - 0.16 11.5 1.4 0.18 11.3 0.1 1.7 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger FYVE PF01363.16 gi|110667960|ref|YP_657771.1| - 0.19 11.6 3.0 0.38 10.6 2.1 1.5 1 1 0 1 1 1 0 FYVE zinc finger A2L_zn_ribbon PF08792.5 gi|110667960|ref|YP_657771.1| - 0.24 10.9 2.2 6.4 6.3 0.2 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain GFA PF04828.9 gi|110667960|ref|YP_657771.1| - 0.41 10.6 2.6 4.7 7.2 0.1 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Prim_Zn_Ribbon PF08273.7 gi|110667960|ref|YP_657771.1| - 0.42 10.7 6.3 0.84 9.7 0.4 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase Rubredoxin PF00301.15 gi|110667960|ref|YP_657771.1| - 0.47 10.3 3.7 3.2 7.7 2.6 1.9 1 1 0 1 1 1 0 Rubredoxin Auto_anti-p27 PF06677.7 gi|110667960|ref|YP_657771.1| - 0.48 10.2 3.4 1.3 8.8 0.2 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF35_N PF12172.3 gi|110667960|ref|YP_657771.1| - 0.48 10.3 3.2 8.3 6.4 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_S27 PF01599.14 gi|110667960|ref|YP_657771.1| - 0.61 9.9 3.6 0.82 9.5 2.5 1.2 1 0 0 1 1 1 0 Ribosomal protein S27a UPF0547 PF10571.4 gi|110667960|ref|YP_657771.1| - 0.63 9.7 3.6 6.9 6.4 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.8 gi|110667960|ref|YP_657771.1| - 0.67 9.4 4.9 1.1 8.7 3.4 1.4 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit PADR1 PF08063.7 gi|110667960|ref|YP_657771.1| - 0.82 9.1 3.2 9.5 5.7 0.3 2.0 1 1 1 2 2 2 0 PADR1 (NUC008) domain Zn_Tnp_IS1595 PF12760.2 gi|110667960|ref|YP_657771.1| - 0.97 9.2 4.4 1.1 9.0 0.3 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|110667960|ref|YP_657771.1| - 1.1 9.0 3.4 8.2 6.2 0.2 2.1 1 1 2 3 3 3 0 RNA polymerases M/15 Kd subunit YhfH PF14149.1 gi|110667960|ref|YP_657771.1| - 1.2 8.9 4.5 9.5 6.1 0.4 2.1 1 1 1 2 2 2 0 YhfH-like protein zf-dskA_traR PF01258.12 gi|110667960|ref|YP_657771.1| - 1.9 8.3 5.5 33 4.3 3.8 2.0 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger Zn_ribbon_recom PF13408.1 gi|110667960|ref|YP_657771.1| - 4.8 7.5 6.1 2.5 8.4 0.6 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Peptidase_M28 PF04389.12 gi|110667962|ref|YP_657773.1| - 2.9e-26 92.3 1.7 4.4e-26 91.7 1.2 1.3 1 0 0 1 1 1 1 Peptidase family M28 Peptidase_M20 PF01546.23 gi|110667962|ref|YP_657773.1| - 3.5e-07 29.9 0.1 5.1e-07 29.3 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 PA PF02225.17 gi|110667962|ref|YP_657773.1| - 1.9e-06 27.5 0.0 4.8e-06 26.2 0.0 1.7 2 0 0 2 2 2 1 PA domain Peptidase_M42 PF05343.9 gi|110667962|ref|YP_657773.1| - 0.0011 17.8 0.1 0.0017 17.2 0.1 1.3 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase CPDase PF07823.6 gi|110667963|ref|YP_657774.1| - 2.9e-24 85.6 0.1 4.1e-24 85.1 0.0 1.2 1 0 0 1 1 1 1 Cyclic phosphodiesterase-like protein 2_5_RNA_ligase2 PF13563.1 gi|110667963|ref|YP_657774.1| - 4.4e-08 32.9 0.0 5.6e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.11 gi|110667963|ref|YP_657774.1| - 0.038 13.9 0.0 0.067 13.1 0.0 1.4 1 0 0 1 1 1 0 LigT like Phosphoesterase KRBA1 PF15287.1 gi|110667964|ref|YP_657775.1| - 0.049 12.9 1.1 0.093 12.1 0.8 1.6 1 1 0 1 1 1 0 KRBA1 family repeat DUF4141 PF13605.1 gi|110667964|ref|YP_657775.1| - 0.077 12.2 0.0 0.094 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4141) DUF4231 PF14015.1 gi|110667964|ref|YP_657775.1| - 0.62 10.0 2.3 0.69 9.9 1.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) CARDB PF07705.6 gi|110667965|ref|YP_657776.1| - 1.3e-13 50.7 13.5 9.2e-06 25.6 0.2 4.4 4 1 0 4 4 4 3 CARDB Transglut_C PF00927.17 gi|110667965|ref|YP_657776.1| - 2.6e-07 30.6 0.5 0.0011 18.9 0.1 4.3 4 0 0 4 4 4 1 Transglutaminase family, C-terminal ig like domain NPCBM_assoc PF10633.4 gi|110667965|ref|YP_657776.1| - 0.00012 22.0 0.9 0.00012 22.0 0.6 5.7 5 2 0 5 5 5 2 NPCBM-associated, NEW3 domain of alpha-galactosidase ABC_tran PF00005.22 gi|110667966|ref|YP_657777.1| - 4.4e-34 117.7 0.0 6.1e-34 117.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110667966|ref|YP_657777.1| - 8.8e-11 42.3 0.1 5.6e-05 23.2 0.0 2.3 2 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|110667966|ref|YP_657777.1| - 9.1e-05 21.9 0.1 0.00016 21.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|110667966|ref|YP_657777.1| - 9.5e-05 22.5 0.1 0.00053 20.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|110667966|ref|YP_657777.1| - 0.00034 19.8 0.0 0.00055 19.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|110667966|ref|YP_657777.1| - 0.00068 19.6 0.2 0.0019 18.2 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|110667966|ref|YP_657777.1| - 0.00095 19.9 0.1 0.0021 18.8 0.1 1.7 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|110667966|ref|YP_657777.1| - 0.0041 16.3 0.1 0.73 9.0 0.1 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|110667966|ref|YP_657777.1| - 0.006 16.0 0.1 0.14 11.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|110667966|ref|YP_657777.1| - 0.006 16.1 0.1 0.091 12.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|110667966|ref|YP_657777.1| - 0.015 14.7 0.0 0.026 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain MobB PF03205.9 gi|110667966|ref|YP_657777.1| - 0.016 14.8 0.0 0.061 13.0 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|110667966|ref|YP_657777.1| - 0.026 14.4 0.1 0.043 13.7 0.1 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.1 gi|110667966|ref|YP_657777.1| - 0.027 14.7 0.0 0.089 13.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|110667966|ref|YP_657777.1| - 0.03 13.2 0.0 0.046 12.6 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.1 gi|110667966|ref|YP_657777.1| - 0.03 14.2 0.0 0.052 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|110667966|ref|YP_657777.1| - 0.033 14.5 0.1 0.05 13.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|110667966|ref|YP_657777.1| - 0.064 12.6 0.0 0.14 11.5 0.0 1.5 2 0 0 2 2 1 0 IstB-like ATP binding protein AAA_19 PF13245.1 gi|110667966|ref|YP_657777.1| - 0.082 12.6 0.2 0.32 10.7 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain NTPase_1 PF03266.10 gi|110667966|ref|YP_657777.1| - 0.087 12.5 0.1 7.4 6.2 0.0 2.2 2 0 0 2 2 2 0 NTPase Arch_ATPase PF01637.13 gi|110667966|ref|YP_657777.1| - 0.14 11.8 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase Dynamin_N PF00350.18 gi|110667966|ref|YP_657777.1| - 0.14 11.9 0.2 0.43 10.3 0.0 1.9 2 0 0 2 2 2 0 Dynamin family IIGP PF05049.8 gi|110667966|ref|YP_657777.1| - 0.14 10.8 0.0 0.21 10.3 0.0 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) MacB_PCD PF12704.2 gi|110667967|ref|YP_657778.1| - 1.4e-22 80.4 6.9 1.4e-22 80.4 4.8 2.5 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|110667967|ref|YP_657778.1| - 5.5e-17 61.6 11.8 5.5e-17 61.6 8.2 2.1 2 0 0 2 2 2 1 FtsX-like permease family TauE PF01925.14 gi|110667967|ref|YP_657778.1| - 0.0004 19.9 13.1 0.0004 19.9 9.1 2.2 2 0 0 2 2 2 2 Sulfite exporter TauE/SafE RPE65 PF03055.10 gi|110667968|ref|YP_657779.1| - 1.9e-109 366.4 0.0 2.1e-109 366.3 0.0 1.0 1 0 0 1 1 1 1 Retinal pigment epithelial membrane protein Usp PF00582.21 gi|110667969|ref|YP_657780.1| - 7.8e-22 77.9 0.8 8.8e-22 77.8 0.5 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|110667969|ref|YP_657780.1| - 0.0051 16.1 0.1 0.007 15.6 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel THDPS_N_2 PF14805.1 gi|110667969|ref|YP_657780.1| - 0.12 12.2 0.2 0.25 11.2 0.1 1.7 1 1 0 1 1 1 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal PEP-utilizers_C PF02896.13 gi|110667971|ref|YP_657782.1| - 3.7e-69 232.8 0.1 5e-69 232.4 0.1 1.1 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|110667971|ref|YP_657782.1| - 1.3e-28 98.3 1.9 2.4e-28 97.4 1.3 1.5 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain AP_endonuc_2 PF01261.19 gi|110667971|ref|YP_657782.1| - 0.0023 17.2 0.2 0.0099 15.1 0.1 2.2 2 1 0 2 2 2 1 Xylose isomerase-like TIM barrel PEP-utilisers_N PF05524.8 gi|110667971|ref|YP_657782.1| - 0.09 12.5 0.4 0.33 10.7 0.1 2.1 2 0 0 2 2 2 0 PEP-utilising enzyme, N-terminal Gp_dh_N PF00044.19 gi|110667972|ref|YP_657783.1| - 1.8e-13 50.7 0.0 7.4e-13 48.7 0.0 2.0 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|110667972|ref|YP_657783.1| - 1.7e-07 31.1 0.0 4.5e-07 29.8 0.0 1.7 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_C PF02800.15 gi|110667972|ref|YP_657783.1| - 4.7e-07 29.3 0.0 9e-06 25.2 0.0 2.2 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|110667972|ref|YP_657783.1| - 0.037 13.1 0.1 0.15 11.2 0.1 1.9 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|110667972|ref|YP_657783.1| - 0.055 13.9 0.0 0.31 11.5 0.0 2.3 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.11 gi|110667972|ref|YP_657783.1| - 0.11 12.9 0.0 0.34 11.3 0.0 1.9 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain PHP_C PF13263.1 gi|110667973|ref|YP_657784.1| - 0.00088 18.7 0.0 0.0029 17.0 0.0 1.9 2 0 0 2 2 2 1 PHP-associated DUF2075 PF09848.4 gi|110667974|ref|YP_657785.1| - 1.1e-105 353.4 0.2 1.5e-105 353.1 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.1 gi|110667974|ref|YP_657785.1| - 7.5e-08 32.0 0.0 1.7e-07 30.8 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain KaiC PF06745.8 gi|110667974|ref|YP_657785.1| - 2.9e-06 26.5 0.2 6.7e-06 25.3 0.1 1.6 1 0 0 1 1 1 1 KaiC ResIII PF04851.10 gi|110667974|ref|YP_657785.1| - 5.3e-06 26.3 0.6 0.025 14.3 0.0 2.9 1 1 1 2 2 2 2 Type III restriction enzyme, res subunit AAA PF00004.24 gi|110667974|ref|YP_657785.1| - 2e-05 24.8 0.3 0.00012 22.2 0.2 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|110667974|ref|YP_657785.1| - 4.4e-05 23.6 0.1 0.00041 20.4 0.1 2.6 1 1 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|110667974|ref|YP_657785.1| - 0.0015 16.9 0.0 0.0025 16.2 0.0 1.3 1 0 0 1 1 1 1 GvpD gas vesicle protein IstB_IS21 PF01695.12 gi|110667974|ref|YP_657785.1| - 0.0019 17.6 0.0 0.0038 16.6 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_11 PF13086.1 gi|110667974|ref|YP_657785.1| - 0.0088 15.6 0.1 0.035 13.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain UvrD-helicase PF00580.16 gi|110667974|ref|YP_657785.1| - 0.011 15.0 1.6 0.016 14.5 0.0 1.9 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain AAA_30 PF13604.1 gi|110667974|ref|YP_657785.1| - 0.015 14.9 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain Torsin PF06309.6 gi|110667974|ref|YP_657785.1| - 0.019 14.8 0.0 0.067 13.0 0.0 2.0 1 0 0 1 1 1 0 Torsin TIP49 PF06068.8 gi|110667974|ref|YP_657785.1| - 0.023 13.4 0.0 0.04 12.6 0.0 1.3 1 0 0 1 1 1 0 TIP49 C-terminus Sigma54_activat PF00158.21 gi|110667974|ref|YP_657785.1| - 0.027 13.9 0.1 0.087 12.2 0.0 1.9 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_14 PF13173.1 gi|110667974|ref|YP_657785.1| - 0.036 13.9 0.3 1 9.2 0.2 2.8 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|110667974|ref|YP_657785.1| - 0.038 13.9 0.0 0.094 12.6 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.1 gi|110667974|ref|YP_657785.1| - 0.043 13.2 0.0 0.13 11.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|110667974|ref|YP_657785.1| - 0.055 13.4 0.0 0.14 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|110667974|ref|YP_657785.1| - 0.068 12.0 0.0 0.17 10.7 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_18 PF13238.1 gi|110667974|ref|YP_657785.1| - 0.088 13.1 0.3 1.1 9.6 0.0 2.8 2 1 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|110667974|ref|YP_657785.1| - 0.11 11.6 0.0 0.28 10.3 0.0 1.6 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|110667974|ref|YP_657785.1| - 0.12 12.4 0.2 7.5 6.7 0.0 3.5 3 1 1 4 4 4 0 RNA helicase NUDIX PF00293.23 gi|110667975|ref|YP_657786.1| - 1.4e-21 76.5 0.1 1.6e-21 76.3 0.1 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|110667975|ref|YP_657786.1| - 0.0077 15.6 0.0 0.012 15.0 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain Pterin_4a PF01329.14 gi|110667976|ref|YP_657787.1| - 1.1e-28 98.8 1.4 1.2e-28 98.6 1.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase DDE_Tnp_1 PF01609.16 gi|110667977|ref|YP_657788.1| - 2.7e-22 79.3 2.7 8e-22 77.8 1.9 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|110667977|ref|YP_657788.1| - 0.00023 20.9 0.0 0.00039 20.1 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|110667977|ref|YP_657788.1| - 0.00075 19.5 0.5 0.0014 18.5 0.0 1.7 2 0 0 2 2 2 1 Transposase DDE domain DUF1989 PF09347.5 gi|110667977|ref|YP_657788.1| - 0.0018 17.7 0.2 0.0029 17.0 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1989) DDE_Tnp_1_2 PF13586.1 gi|110667977|ref|YP_657788.1| - 0.0034 17.5 0.1 0.007 16.5 0.1 1.6 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|110667977|ref|YP_657788.1| - 0.054 13.4 0.0 0.14 12.0 0.0 1.7 1 0 0 1 1 1 0 Transposase domain (DUF772) rve PF00665.21 gi|110667977|ref|YP_657788.1| - 0.13 12.4 0.7 0.56 10.3 0.5 2.0 1 1 0 1 1 1 0 Integrase core domain Alpha-amylase PF00128.19 gi|110667978|ref|YP_657789.1| - 1.5e-48 165.8 0.0 2.2e-48 165.3 0.0 1.1 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Exonuc_VII_S PF02609.11 gi|110667979|ref|YP_657790.1| - 2.5e-09 36.7 2.1 3.1e-09 36.4 1.4 1.1 1 0 0 1 1 1 1 Exonuclease VII small subunit UBN2_2 PF14227.1 gi|110667979|ref|YP_657790.1| - 0.084 12.4 0.1 0.1 12.1 0.1 1.2 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type Exonuc_VII_L PF02601.10 gi|110667980|ref|YP_657791.1| - 1.2e-50 172.5 2.5 1.6e-50 172.1 1.8 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit tRNA_anti_2 PF13742.1 gi|110667980|ref|YP_657791.1| - 1.7e-19 69.4 0.1 5.7e-19 67.8 0.0 1.8 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain FbpA PF05833.6 gi|110667980|ref|YP_657791.1| - 0.00077 18.1 0.3 0.0013 17.4 0.2 1.3 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF3584 PF12128.3 gi|110667980|ref|YP_657791.1| - 0.011 13.0 5.7 0.017 12.5 4.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) tRNA_anti-codon PF01336.20 gi|110667980|ref|YP_657791.1| - 0.025 14.4 0.0 0.051 13.4 0.0 1.5 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain Rho_Binding PF08912.6 gi|110667980|ref|YP_657791.1| - 0.16 12.2 5.8 0.084 13.1 0.8 2.3 1 1 1 2 2 2 0 Rho Binding Kinetocho_Slk19 PF12709.2 gi|110667980|ref|YP_657791.1| - 0.23 11.5 4.7 0.59 10.2 3.3 1.7 1 0 0 1 1 1 0 Central kinetochore-associated DUF1311 PF07007.7 gi|110667980|ref|YP_657791.1| - 0.55 10.3 5.1 12 6.0 0.3 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1311) DUF1611 PF07755.6 gi|110667981|ref|YP_657792.1| - 8.2e-112 372.7 0.4 9.6e-112 372.5 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1611) Endonuclease_5 PF04493.9 gi|110667981|ref|YP_657792.1| - 0.07 12.4 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Endonuclease V AAA_26 PF13500.1 gi|110667981|ref|YP_657792.1| - 0.074 12.6 0.3 0.74 9.3 0.0 2.4 2 1 0 3 3 3 0 AAA domain MR_MLE PF01188.16 gi|110667982|ref|YP_657793.1| - 7.2e-15 55.2 2.0 9.5e-15 54.8 0.5 2.0 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|110667982|ref|YP_657793.1| - 2.7e-14 53.0 0.2 2e-13 50.2 0.1 2.3 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|110667982|ref|YP_657793.1| - 1.1e-11 44.6 0.1 4e-11 42.9 0.0 1.8 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Lactamase_B_2 PF12706.2 gi|110667983|ref|YP_657794.1| - 1.8e-27 96.1 0.1 2.4e-27 95.7 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|110667983|ref|YP_657794.1| - 9.9e-15 54.7 0.1 9.6e-14 51.4 0.1 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|110667983|ref|YP_657794.1| - 0.0016 18.1 0.0 0.0049 16.5 0.0 1.9 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_4 PF13691.1 gi|110667983|ref|YP_657794.1| - 0.05 13.0 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 tRNase Z endonuclease MIT PF04212.13 gi|110667984|ref|YP_657795.1| - 0.0055 16.5 3.3 0.039 13.8 0.9 3.5 2 0 0 2 2 2 1 MIT (microtubule interacting and transport) domain DUF1771 PF08590.5 gi|110667984|ref|YP_657795.1| - 3.2 7.8 10.0 1.6 8.7 0.4 3.7 4 0 0 4 4 4 0 Domain of unknown function (DUF1771) Rhodanese PF00581.15 gi|110667985|ref|YP_657796.1| - 1.2e-29 102.9 0.0 3.9e-14 52.9 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Peptidase_S49 PF01343.13 gi|110667987|ref|YP_657798.1| - 2.8e-41 140.8 0.0 4.6e-41 140.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S49 DUF1009 PF06230.6 gi|110667987|ref|YP_657798.1| - 0.0058 16.0 0.0 0.0099 15.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1009) SDH_sah PF01972.11 gi|110667987|ref|YP_657798.1| - 0.011 14.5 0.0 0.02 13.6 0.0 1.4 1 0 0 1 1 1 0 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|110667987|ref|YP_657798.1| - 0.012 15.2 0.0 3.8 7.1 0.0 2.4 2 0 0 2 2 2 0 Clp protease MoCF_biosynth PF00994.19 gi|110667988|ref|YP_657799.1| - 1.6e-32 111.8 0.3 2.4e-32 111.3 0.2 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain HAD PF12710.2 gi|110667989|ref|YP_657800.1| - 6.2e-13 49.3 0.2 8.9e-13 48.8 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase SecA_SW PF07516.8 gi|110667989|ref|YP_657800.1| - 0.06 13.0 0.4 0.12 12.1 0.3 1.6 1 1 0 1 1 1 0 SecA Wing and Scaffold domain Metallophos_2 PF12850.2 gi|110667990|ref|YP_657801.1| - 1.2e-10 41.3 0.2 1.8e-10 40.8 0.2 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|110667990|ref|YP_657801.1| - 5e-06 26.0 4.9 8.9e-05 21.9 3.4 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Pro_CA PF00484.14 gi|110667991|ref|YP_657802.1| - 1.1e-24 87.2 0.1 1.7e-24 86.5 0.0 1.4 2 0 0 2 2 2 1 Carbonic anhydrase Lbh PF15317.1 gi|110667991|ref|YP_657802.1| - 0.07 13.3 0.0 0.21 11.8 0.0 1.8 1 0 0 1 1 1 0 Cardiac transcription factor regulator, Developmental protein Amidohydro_1 PF01979.15 gi|110667992|ref|YP_657803.1| - 1.3e-07 31.6 0.1 1.8e-07 31.1 0.1 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.6 gi|110667992|ref|YP_657803.1| - 4.9e-05 22.7 0.2 7e-05 22.2 0.1 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|110667992|ref|YP_657803.1| - 0.00077 19.5 0.3 0.0015 18.6 0.1 1.5 2 0 0 2 2 2 1 Amidohydrolase Baculo_LEF5_C PF11792.3 gi|110667992|ref|YP_657803.1| - 0.038 13.3 0.1 0.052 12.9 0.1 1.2 1 0 0 1 1 1 0 Baculoviridae late expression factor 5 C-terminal domain CP_ATPgrasp_2 PF14403.1 gi|110667992|ref|YP_657803.1| - 0.091 11.3 0.0 0.11 11.1 0.0 1.1 1 0 0 1 1 1 0 Circularly permuted ATP-grasp type 2 Amidohydro_3 PF07969.6 gi|110667993|ref|YP_657804.1| - 0.011 14.9 0.0 0.011 14.9 0.0 1.0 1 0 0 1 1 1 0 Amidohydrolase family Amidohydro_1 PF01979.15 gi|110667994|ref|YP_657805.1| - 1.6e-43 149.6 0.8 2e-43 149.3 0.6 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|110667994|ref|YP_657805.1| - 9.9e-15 55.2 1.0 1.7e-14 54.5 0.7 1.4 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|110667994|ref|YP_657805.1| - 0.00085 19.0 2.1 0.0015 18.2 0.2 2.4 2 0 0 2 2 2 1 Amidohydrolase A_deaminase PF00962.17 gi|110667994|ref|YP_657805.1| - 0.0014 17.6 0.0 0.0033 16.3 0.0 1.6 2 0 0 2 2 2 1 Adenosine/AMP deaminase Pribosyltran PF00156.22 gi|110667995|ref|YP_657806.1| - 1.7e-19 69.8 0.4 2.2e-19 69.4 0.3 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|110667995|ref|YP_657806.1| - 0.0082 15.3 0.1 0.013 14.7 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|110667995|ref|YP_657806.1| - 0.077 12.2 0.2 0.11 11.7 0.1 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase OrfB_IS605 PF01385.14 gi|110667996|ref|YP_657807.1| - 4.9e-64 215.8 0.5 6.4e-64 215.4 0.3 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|110667996|ref|YP_657807.1| - 7e-17 60.8 0.6 1.5e-16 59.7 0.4 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain PHO4 PF01384.15 gi|110667997|ref|YP_657808.1| - 1.4e-57 194.8 25.4 2e-57 194.2 17.6 1.3 1 0 0 1 1 1 1 Phosphate transporter family HATPase_c PF02518.21 gi|110667998|ref|YP_657809.1| - 5.5e-15 55.0 0.0 1.1e-14 54.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|110667998|ref|YP_657809.1| - 0.00067 19.6 0.7 0.0046 16.9 0.1 2.5 3 0 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.1 gi|110667998|ref|YP_657809.1| - 0.00083 19.1 0.0 0.002 17.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|110667998|ref|YP_657809.1| - 0.00094 18.8 0.0 0.0017 18.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|110667998|ref|YP_657809.1| - 0.02 14.8 0.0 0.039 13.9 0.0 1.5 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|110667998|ref|YP_657809.1| - 0.025 14.9 0.2 0.18 12.1 0.0 2.4 3 1 0 3 3 3 0 PAS domain SPOB_a PF14689.1 gi|110667998|ref|YP_657809.1| - 0.051 13.1 0.0 0.094 12.2 0.0 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain PAS PF00989.19 gi|110667998|ref|YP_657809.1| - 0.11 12.2 0.1 0.75 9.6 0.0 2.1 2 0 0 2 2 2 0 PAS fold DUF348 PF03990.9 gi|110667998|ref|YP_657809.1| - 0.18 11.4 3.5 5.6 6.6 0.1 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF348) PAS PF00989.19 gi|110667999|ref|YP_657810.1| - 0.0011 18.7 0.1 0.031 14.0 0.0 2.2 2 0 0 2 2 2 1 PAS fold CD20 PF04103.10 gi|110667999|ref|YP_657810.1| - 7.6 6.4 13.6 0.13 12.2 3.8 2.1 2 1 1 3 3 3 0 CD20-like family LMBR1 PF04791.11 gi|110668000|ref|YP_657811.1| - 0.0029 16.2 0.0 0.0034 16.0 0.0 1.0 1 0 0 1 1 1 1 LMBR1-like membrane protein DUF373 PF04123.8 gi|110668000|ref|YP_657811.1| - 0.04 12.9 2.1 0.05 12.6 1.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DivIC PF04977.10 gi|110668000|ref|YP_657811.1| - 0.072 12.5 0.2 0.25 10.8 0.0 1.9 1 1 1 2 2 2 0 Septum formation initiator DUF4234 PF14018.1 gi|110668000|ref|YP_657811.1| - 0.089 12.5 3.0 0.33 10.7 2.1 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4234) TAT_signal PF10518.4 gi|110668001|ref|YP_657812.1| - 0.012 15.5 2.9 0.018 15.0 2.0 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence RebB PF11747.3 gi|110668001|ref|YP_657812.1| - 0.029 14.2 0.5 0.067 13.0 0.3 1.6 1 0 0 1 1 1 0 Killing trait Chitin_bind_4 PF00379.18 gi|110668001|ref|YP_657812.1| - 0.071 13.3 0.1 0.28 11.4 0.0 2.0 2 0 0 2 2 2 0 Insect cuticle protein DUF819 PF05684.7 gi|110668002|ref|YP_657813.1| - 0.014 14.2 1.5 0.017 13.9 1.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF819) DUF1980 PF09323.5 gi|110668002|ref|YP_657813.1| - 0.13 11.9 0.4 0.15 11.8 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1980) DUF805 PF05656.9 gi|110668002|ref|YP_657813.1| - 0.19 11.5 7.3 1.6 8.5 2.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF805) DUF4199 PF13858.1 gi|110668002|ref|YP_657813.1| - 3.9 7.3 10.1 1.5 8.7 4.9 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) DUF3989 PF13150.1 gi|110668004|ref|YP_657815.1| - 0.12 11.8 0.3 0.12 11.8 0.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3989) zf-BED PF02892.10 gi|110668005|ref|YP_657816.1| - 0.016 14.9 0.4 0.87 9.3 0.0 2.2 2 0 0 2 2 2 0 BED zinc finger Peptidase_S66 PF02016.10 gi|110668006|ref|YP_657817.1| - 0.0035 16.3 0.0 0.0035 16.3 0.0 1.0 1 0 0 1 1 1 1 LD-carboxypeptidase Peptidase_S66 PF02016.10 gi|110668007|ref|YP_657818.1| - 6.2e-39 133.6 0.0 7.3e-39 133.4 0.0 1.0 1 0 0 1 1 1 1 LD-carboxypeptidase LysE PF01810.13 gi|110668009|ref|YP_657820.1| - 6.3e-37 126.7 4.3 7.2e-37 126.5 3.0 1.0 1 0 0 1 1 1 1 LysE type translocator TerC PF03741.11 gi|110668009|ref|YP_657820.1| - 0.0031 16.9 3.5 0.013 14.9 2.5 1.9 1 1 0 1 1 1 1 Integral membrane protein TerC family DUF3169 PF11368.3 gi|110668009|ref|YP_657820.1| - 0.0034 16.6 0.4 0.0051 16.0 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3169) FtsX PF02687.16 gi|110668010|ref|YP_657821.1| - 0.27 11.0 2.2 0.4 10.4 1.5 1.4 1 1 0 1 1 1 0 FtsX-like permease family 2-Hacid_dh_C PF02826.14 gi|110668011|ref|YP_657822.1| - 2.2e-50 170.2 0.0 1.3e-48 164.4 0.0 2.3 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|110668011|ref|YP_657822.1| - 3.7e-18 65.2 0.0 4.4e-18 65.0 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VWA PF00092.23 gi|110668013|ref|YP_657824.1| - 3.1e-11 43.3 0.2 3.7e-11 43.0 0.1 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.1 gi|110668013|ref|YP_657824.1| - 4.5e-11 43.1 1.9 8.2e-11 42.3 1.3 1.5 1 1 0 1 1 1 1 von Willebrand factor type A domain vWA-TerF-like PF10138.4 gi|110668013|ref|YP_657824.1| - 0.00075 19.3 1.3 0.056 13.2 0.9 2.3 1 1 0 1 1 1 1 vWA found in TerF C terminus VWA_CoxE PF05762.9 gi|110668013|ref|YP_657824.1| - 0.035 13.2 0.5 0.1 11.6 0.3 1.9 1 1 0 1 1 1 0 VWA domain containing CoxE-like protein DUF1194 PF06707.6 gi|110668013|ref|YP_657824.1| - 0.041 12.8 0.1 0.041 12.8 0.1 2.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1194) DUF204 PF02659.10 gi|110668015|ref|YP_657826.1| - 0.3 11.2 3.9 0.56 10.3 2.7 1.6 1 1 0 1 1 1 0 Domain of unknown function DUF 2TM PF13239.1 gi|110668015|ref|YP_657826.1| - 0.58 10.2 4.9 0.12 12.5 0.4 1.9 1 1 1 2 2 2 0 2TM domain Big_3_4 PF13754.1 gi|110668016|ref|YP_657827.1| - 0.05 13.9 1.3 0.05 13.9 0.9 2.7 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 3) OrfB_IS605 PF01385.14 gi|110668017|ref|YP_657828.1| - 5.6e-61 205.8 0.3 7.2e-61 205.4 0.2 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|110668017|ref|YP_657828.1| - 3.8e-15 55.2 1.5 1e-14 53.8 1.0 1.8 1 1 0 1 1 1 1 Putative transposase DNA-binding domain Complex1_30kDa PF00329.14 gi|110668017|ref|YP_657828.1| - 0.053 13.7 0.3 0.13 12.5 0.0 1.8 2 0 0 2 2 2 0 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DRP PF06044.7 gi|110668018|ref|YP_657829.1| - 1.4e-11 43.8 1.1 1.7e-11 43.6 0.8 1.1 1 0 0 1 1 1 1 Dam-replacing family Fic PF02661.13 gi|110668018|ref|YP_657829.1| - 0.079 13.6 0.4 0.11 13.1 0.3 1.2 1 0 0 1 1 1 0 Fic/DOC family DUF3221 PF11518.3 gi|110668018|ref|YP_657829.1| - 0.13 11.9 1.4 0.22 11.1 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3221) DUF4404 PF14357.1 gi|110668018|ref|YP_657829.1| - 1.4 9.3 4.5 0.49 10.8 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) AAA_23 PF13476.1 gi|110668020|ref|YP_657831.1| - 2e-16 60.9 21.2 2e-16 60.9 14.7 3.8 2 2 1 3 3 1 1 AAA domain SMC_N PF02463.14 gi|110668020|ref|YP_657831.1| - 1.3e-07 31.0 0.0 1.3e-07 31.0 0.0 2.8 2 1 0 2 2 1 1 RecF/RecN/SMC N terminal domain Reo_sigmaC PF04582.7 gi|110668020|ref|YP_657831.1| - 7.6e-06 25.3 5.0 0.011 14.9 0.1 2.6 2 0 0 2 2 2 2 Reovirus sigma C capsid protein AAA_29 PF13555.1 gi|110668020|ref|YP_657831.1| - 8.1e-06 25.2 0.0 1.6e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain IncA PF04156.9 gi|110668020|ref|YP_657831.1| - 1.6e-05 24.5 13.0 1.6e-05 24.5 9.0 3.2 3 1 0 3 3 3 1 IncA protein AAA_21 PF13304.1 gi|110668020|ref|YP_657831.1| - 5.7e-05 23.2 10.4 0.037 13.9 2.2 3.0 2 1 0 2 2 2 2 AAA domain AAA_13 PF13166.1 gi|110668020|ref|YP_657831.1| - 0.00012 20.7 34.2 0.038 12.4 0.1 3.7 3 1 0 3 3 3 3 AAA domain Spc7 PF08317.6 gi|110668020|ref|YP_657831.1| - 0.00017 20.3 28.5 0.0051 15.5 8.6 2.2 2 0 0 2 2 2 2 Spc7 kinetochore protein Baculo_PEP_C PF04513.7 gi|110668020|ref|YP_657831.1| - 0.00039 20.2 10.5 0.069 12.9 0.7 3.0 2 1 0 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus CENP-F_leu_zip PF10473.4 gi|110668020|ref|YP_657831.1| - 0.00045 20.0 36.4 0.013 15.3 8.5 3.0 2 1 1 3 3 3 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Prominin PF05478.6 gi|110668020|ref|YP_657831.1| - 0.00056 17.5 3.1 0.00056 17.5 2.1 2.1 2 0 0 2 2 2 1 Prominin DUF2075 PF09848.4 gi|110668020|ref|YP_657831.1| - 0.0018 17.2 3.6 0.18 10.7 0.0 2.5 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Mnd1 PF03962.10 gi|110668020|ref|YP_657831.1| - 0.0035 17.0 8.0 0.0035 17.0 5.5 4.2 3 1 1 4 4 4 1 Mnd1 family APG6 PF04111.7 gi|110668020|ref|YP_657831.1| - 0.011 14.7 27.6 0.034 13.1 4.7 2.6 2 0 0 2 2 2 0 Autophagy protein Apg6 AAA_22 PF13401.1 gi|110668020|ref|YP_657831.1| - 0.011 15.8 0.1 0.098 12.7 0.0 2.6 2 1 1 3 3 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|110668020|ref|YP_657831.1| - 0.012 15.1 6.5 0.17 11.3 0.0 3.2 3 0 0 3 3 3 0 FtsK/SpoIIIE family NACHT PF05729.7 gi|110668020|ref|YP_657831.1| - 0.015 14.9 1.1 0.11 12.1 0.0 2.7 3 0 0 3 3 3 0 NACHT domain AAA_19 PF13245.1 gi|110668020|ref|YP_657831.1| - 0.015 15.0 0.0 0.039 13.6 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain Tektin PF03148.9 gi|110668020|ref|YP_657831.1| - 0.017 13.7 30.2 0.28 9.6 4.5 4.3 2 1 2 4 4 4 0 Tektin family DUF258 PF03193.11 gi|110668020|ref|YP_657831.1| - 0.017 14.3 0.0 0.05 12.7 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF4320 PF14208.1 gi|110668020|ref|YP_657831.1| - 0.045 13.7 0.4 0.045 13.7 0.3 2.8 2 1 2 4 4 3 0 Domain of unknown function (DUF4320) FUSC PF04632.7 gi|110668020|ref|YP_657831.1| - 0.051 12.0 8.2 0.098 11.0 0.5 2.2 2 0 0 2 2 2 0 Fusaric acid resistance protein family bZIP_1 PF00170.16 gi|110668020|ref|YP_657831.1| - 0.055 13.4 17.7 3.3 7.7 3.1 4.3 3 1 0 3 3 3 0 bZIP transcription factor DUF812 PF05667.6 gi|110668020|ref|YP_657831.1| - 0.069 11.6 35.0 0.068 11.6 7.6 3.3 2 2 1 3 3 3 0 Protein of unknown function (DUF812) Tropomyosin_1 PF12718.2 gi|110668020|ref|YP_657831.1| - 0.07 12.9 32.8 1 9.2 10.5 2.8 2 0 0 2 2 2 0 Tropomyosin like ABC_tran PF00005.22 gi|110668020|ref|YP_657831.1| - 0.091 13.0 19.8 0.023 14.9 5.6 3.8 2 2 0 2 2 2 0 ABC transporter V_ATPase_I PF01496.14 gi|110668020|ref|YP_657831.1| - 0.11 10.3 26.7 0.074 10.9 4.4 2.7 2 1 0 2 2 2 0 V-type ATPase 116kDa subunit family DUF1664 PF07889.7 gi|110668020|ref|YP_657831.1| - 0.13 12.0 18.5 0.54 10.0 2.6 3.3 2 2 0 2 2 2 0 Protein of unknown function (DUF1664) DASH_Dad2 PF08654.5 gi|110668020|ref|YP_657831.1| - 0.52 10.3 9.9 0.12 12.3 0.3 4.0 2 2 2 4 4 4 0 DASH complex subunit Dad2 Seryl_tRNA_N PF02403.17 gi|110668020|ref|YP_657831.1| - 0.64 10.0 31.1 0.96 9.4 6.5 4.2 2 2 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain Retrotrans_gag PF03732.12 gi|110668020|ref|YP_657831.1| - 1.6 8.8 6.4 5.4 7.1 0.0 3.2 3 0 0 3 3 3 0 Retrotransposon gag protein CDC37_N PF03234.9 gi|110668020|ref|YP_657831.1| - 2.5 8.3 26.5 0.33 11.2 1.9 4.0 2 1 1 3 3 3 0 Cdc37 N terminal kinase binding AAA_16 PF13191.1 gi|110668020|ref|YP_657831.1| - 2.7 7.9 13.7 0.17 11.8 1.4 3.9 2 2 0 2 2 2 0 AAA ATPase domain MscS_porin PF12795.2 gi|110668020|ref|YP_657831.1| - 2.8 7.2 37.6 0.012 14.9 6.8 3.6 2 1 2 4 4 4 0 Mechanosensitive ion channel porin domain AAA_11 PF13086.1 gi|110668020|ref|YP_657831.1| - 3.1 7.3 21.3 0.069 12.7 4.0 3.0 2 2 0 2 2 2 0 AAA domain DUF4407 PF14362.1 gi|110668020|ref|YP_657831.1| - 3.8 6.3 20.3 0.21 10.5 1.6 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) Laminin_II PF06009.7 gi|110668020|ref|YP_657831.1| - 6.4 6.5 21.9 0.36 10.5 1.0 4.5 2 2 2 4 4 4 0 Laminin Domain II GLE1 PF07817.8 gi|110668020|ref|YP_657831.1| - 6.8 5.5 10.2 4.5 6.1 0.1 2.9 3 0 0 3 3 3 0 GLE1-like protein TBPIP PF07106.8 gi|110668020|ref|YP_657831.1| - 8.8 5.8 35.6 0.66 9.5 6.6 3.4 3 2 0 3 3 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Prefoldin_2 PF01920.15 gi|110668020|ref|YP_657831.1| - 9 6.1 32.6 0.82 9.4 1.4 5.3 4 1 0 4 4 3 0 Prefoldin subunit N6_N4_Mtase PF01555.13 gi|110668022|ref|YP_657833.1| - 2.1e-40 138.6 0.0 5.2e-40 137.3 0.0 1.6 1 0 0 1 1 1 1 DNA methylase HATPase_c_3 PF13589.1 gi|110668022|ref|YP_657833.1| - 6.6e-09 35.5 0.1 2e-08 33.9 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Methyltransf_26 PF13659.1 gi|110668022|ref|YP_657833.1| - 2.2e-06 27.6 0.0 0.078 13.0 0.0 2.7 3 0 0 3 3 3 2 Methyltransferase domain HATPase_c PF02518.21 gi|110668022|ref|YP_657833.1| - 2.6e-05 23.9 0.0 0.00017 21.2 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UPF0020 PF01170.13 gi|110668022|ref|YP_657833.1| - 0.0016 18.0 0.0 0.0055 16.2 0.0 1.9 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 DUF2387 PF09526.5 gi|110668022|ref|YP_657833.1| - 0.0067 16.3 0.6 0.021 14.7 0.4 1.9 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) N6_N4_Mtase PF01555.13 gi|110668023|ref|YP_657834.1| - 3.7e-42 144.3 0.0 7e-42 143.4 0.0 1.4 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|110668023|ref|YP_657834.1| - 2.2e-07 30.9 0.0 0.0017 18.3 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|110668023|ref|YP_657834.1| - 7.5e-06 25.6 0.0 0.078 12.5 0.0 2.6 3 0 0 3 3 3 2 Putative RNA methylase family UPF0020 Met_10 PF02475.11 gi|110668023|ref|YP_657834.1| - 0.0086 15.6 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein ResIII PF04851.10 gi|110668024|ref|YP_657835.1| - 1.9e-21 76.7 0.0 8.9e-21 74.5 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|110668024|ref|YP_657835.1| - 1.8e-12 46.9 0.0 5.6e-12 45.3 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|110668024|ref|YP_657835.1| - 9.5e-09 34.9 0.0 2.4e-08 33.6 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|110668024|ref|YP_657835.1| - 0.0058 16.7 0.0 1.2 9.2 0.0 2.8 2 0 0 2 2 2 1 AAA domain DUF4201 PF13870.1 gi|110668024|ref|YP_657835.1| - 0.022 14.2 1.9 0.043 13.2 1.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) DUF853 PF05872.7 gi|110668024|ref|YP_657835.1| - 0.027 12.8 0.0 3.3 5.9 0.0 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) Glutaredoxin2_C PF04399.8 gi|110668024|ref|YP_657835.1| - 0.052 13.1 0.1 0.14 11.7 0.1 1.7 1 0 0 1 1 1 0 Glutaredoxin 2, C terminal domain AAA_11 PF13086.1 gi|110668024|ref|YP_657835.1| - 0.1 12.1 0.2 0.31 10.5 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|110668025|ref|YP_657836.1| - 5.4e-12 46.4 33.6 5.4e-12 46.4 23.3 3.3 1 1 0 2 2 1 1 AAA domain SMC_N PF02463.14 gi|110668025|ref|YP_657836.1| - 3.1e-07 29.8 0.5 3.1e-07 29.8 0.3 2.7 2 1 0 2 2 1 1 RecF/RecN/SMC N terminal domain DUF3584 PF12128.3 gi|110668025|ref|YP_657836.1| - 1.7e-05 22.3 24.6 0.0032 14.9 3.8 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF3584) AAA_29 PF13555.1 gi|110668025|ref|YP_657836.1| - 6.9e-05 22.2 0.0 0.00014 21.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain CENP-F_leu_zip PF10473.4 gi|110668025|ref|YP_657836.1| - 0.00016 21.5 14.3 0.00016 21.5 9.9 3.3 2 1 1 3 3 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_21 PF13304.1 gi|110668025|ref|YP_657836.1| - 0.00023 21.2 16.8 0.00084 19.3 5.0 3.0 2 1 0 2 2 2 2 AAA domain Reo_sigmaC PF04582.7 gi|110668025|ref|YP_657836.1| - 0.0096 15.1 0.2 0.0096 15.1 0.2 2.0 2 1 0 2 2 2 1 Reovirus sigma C capsid protein DUF258 PF03193.11 gi|110668025|ref|YP_657836.1| - 0.011 14.8 0.1 0.04 13.0 0.1 2.0 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|110668025|ref|YP_657836.1| - 0.015 13.8 47.1 0.13 10.6 0.2 4.3 2 1 2 4 4 4 0 AAA domain ABC_tran PF00005.22 gi|110668025|ref|YP_657836.1| - 0.049 13.9 0.1 0.049 13.9 0.0 4.1 3 1 0 3 3 3 0 ABC transporter Spc7 PF08317.6 gi|110668025|ref|YP_657836.1| - 0.19 10.3 35.6 0.1 11.2 7.6 2.5 2 0 0 2 2 2 0 Spc7 kinetochore protein HrpB7 PF09486.5 gi|110668025|ref|YP_657836.1| - 0.89 9.4 15.1 0.071 13.0 0.6 3.0 2 2 0 2 2 2 0 Bacterial type III secretion protein (HrpB7) V_ATPase_I PF01496.14 gi|110668025|ref|YP_657836.1| - 3.6 5.3 26.3 0.15 9.9 3.2 2.2 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family TPR_2 PF07719.12 gi|110668027|ref|YP_657838.1| - 5e-07 29.1 7.9 0.0032 17.2 0.7 2.7 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|110668027|ref|YP_657838.1| - 0.00052 19.5 2.2 0.13 12.0 0.3 3.0 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|110668027|ref|YP_657838.1| - 0.0012 18.7 3.4 0.054 13.4 0.3 2.6 1 1 0 2 2 2 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|110668027|ref|YP_657838.1| - 0.0025 17.4 3.4 0.004 16.7 1.2 2.3 2 1 0 2 2 2 1 TPR repeat TPR_6 PF13174.1 gi|110668027|ref|YP_657838.1| - 0.0036 17.6 2.6 1.6 9.3 0.1 3.0 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|110668027|ref|YP_657838.1| - 0.0053 16.8 0.8 2.2 8.7 0.0 3.0 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|110668027|ref|YP_657838.1| - 0.0096 15.6 5.2 0.1 12.3 0.4 2.9 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|110668027|ref|YP_657838.1| - 0.0097 16.5 2.1 1.6 9.4 0.3 2.6 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|110668027|ref|YP_657838.1| - 0.021 15.1 1.0 3.1 8.1 0.1 3.0 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_1 PF00515.23 gi|110668027|ref|YP_657838.1| - 0.028 14.0 5.5 1.2 8.8 0.4 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat LAGLIDADG_1 PF00961.14 gi|110668028|ref|YP_657839.1| - 1.7e-05 25.2 0.2 0.0022 18.5 0.0 3.0 3 1 0 3 3 3 1 LAGLIDADG endonuclease DUF3919 PF13057.1 gi|110668028|ref|YP_657839.1| - 0.0065 15.9 0.2 0.012 15.0 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3919) DDE_Tnp_1 PF01609.16 gi|110668029|ref|YP_657840.1| - 0.0038 16.7 0.1 0.0038 16.7 0.1 1.1 1 0 0 1 1 1 1 Transposase DDE domain DUF4372 PF14294.1 gi|110668030|ref|YP_657841.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4372) Nab2 PF11517.3 gi|110668030|ref|YP_657841.1| - 0.12 12.4 0.1 0.29 11.2 0.0 1.6 1 1 0 1 1 1 0 Nuclear abundant poly(A) RNA-bind protein 2 (Nab2) TF_Zn_Ribbon PF08271.7 gi|110668031|ref|YP_657842.1| - 0.012 14.8 0.9 0.038 13.2 0.6 1.9 1 0 0 1 1 1 0 TFIIB zinc-binding DNA_ligase_ZBD PF03119.11 gi|110668031|ref|YP_657842.1| - 0.034 13.8 0.1 0.12 12.1 0.0 1.9 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain RNR_N PF08343.5 gi|110668031|ref|YP_657842.1| - 0.065 13.0 1.4 32 4.4 0.0 3.4 3 0 0 3 3 3 0 Ribonucleotide reductase N-terminal Helicase_C PF00271.26 gi|110668032|ref|YP_657843.1| - 9.1e-06 25.4 0.0 2.1e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|110668032|ref|YP_657843.1| - 0.0033 16.9 0.0 0.61 9.5 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase HTH_3 PF01381.17 gi|110668032|ref|YP_657843.1| - 0.39 10.5 3.3 24 4.8 0.0 3.3 3 0 0 3 3 3 0 Helix-turn-helix Transpeptidase PF00905.17 gi|110668033|ref|YP_657844.1| - 0.0095 14.9 0.0 0.021 13.8 0.0 1.5 1 0 0 1 1 1 1 Penicillin binding protein transpeptidase domain BpuSI_N PF15516.1 gi|110668034|ref|YP_657845.1| - 0.082 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 BpuSI N-terminal domain RNA_pol_A_bac PF01000.21 gi|110668034|ref|YP_657845.1| - 0.14 12.2 0.0 0.23 11.6 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase Rpb3/RpoA insert domain PIN_2 PF10130.4 gi|110668035|ref|YP_657846.1| - 1.4e-30 106.0 0.2 1.4e-30 106.0 0.2 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|110668035|ref|YP_657846.1| - 0.00031 21.4 0.6 0.00044 20.9 0.4 1.2 1 0 0 1 1 1 1 PIN domain OTT_1508_deam PF14441.1 gi|110668037|ref|YP_657848.1| - 0.0047 16.7 0.0 0.0055 16.5 0.0 1.1 1 0 0 1 1 1 1 OTT_1508-like deaminase Rubredoxin PF00301.15 gi|110668037|ref|YP_657848.1| - 0.026 14.4 1.3 2.3 8.1 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin UPF0547 PF10571.4 gi|110668037|ref|YP_657848.1| - 0.054 13.2 4.3 0.31 10.7 2.9 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF2769 PF10967.3 gi|110668037|ref|YP_657848.1| - 0.13 12.5 1.6 4 7.8 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2769) zinc-ribbons_6 PF07191.7 gi|110668037|ref|YP_657848.1| - 0.14 11.9 1.1 1 9.2 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbons DUF2752 PF10825.3 gi|110668037|ref|YP_657848.1| - 0.22 11.5 1.1 0.41 10.7 0.3 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) zf-IS66 PF13005.2 gi|110668037|ref|YP_657848.1| - 0.23 11.4 3.5 4.2 7.4 0.1 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DZR PF12773.2 gi|110668037|ref|YP_657848.1| - 0.23 11.2 2.4 1.3 8.8 1.7 1.9 1 1 0 1 1 1 0 Double zinc ribbon zf-TFIIB PF13453.1 gi|110668037|ref|YP_657848.1| - 0.29 10.3 3.0 2 7.6 2.2 2.1 1 1 0 1 1 1 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.5 gi|110668037|ref|YP_657848.1| - 0.6 10.1 3.3 12 5.8 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-RING_3 PF14369.1 gi|110668037|ref|YP_657848.1| - 0.63 10.0 3.1 16 5.5 0.1 2.3 2 0 0 2 2 2 0 zinc-finger zf-C4_Topoisom PF01396.14 gi|110668037|ref|YP_657848.1| - 0.72 9.4 3.5 5.1 6.6 0.2 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger A2L_zn_ribbon PF08792.5 gi|110668037|ref|YP_657848.1| - 1 8.9 3.3 14 5.2 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Tme5_EGF_like PF09064.5 gi|110668037|ref|YP_657848.1| - 2.6 7.7 6.3 16 5.2 0.2 2.3 2 0 0 2 2 2 0 Thrombomodulin like fifth domain, EGF-like Xan_ur_permease PF00860.15 gi|110668041|ref|YP_657852.1| - 1.2e-91 307.1 45.1 1.6e-91 306.6 31.3 1.1 1 0 0 1 1 1 1 Permease family Abi PF02517.11 gi|110668042|ref|YP_657853.1| - 9.6e-12 44.8 12.2 2.8e-11 43.3 8.5 2.1 1 1 0 1 1 1 1 CAAX protease self-immunity Phage_integrase PF00589.17 gi|110668043|ref|YP_657854.1| - 0.0029 17.3 0.0 0.0029 17.3 0.0 1.0 1 0 0 1 1 1 1 Phage integrase family DUF433 PF04255.9 gi|110668046|ref|YP_657857.1| - 2e-06 27.0 0.1 3.5e-06 26.3 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF433) DUF2964 PF11177.3 gi|110668050|ref|YP_657861.1| - 0.45 10.4 6.0 3.1 7.7 0.3 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2964) RHH_1 PF01402.16 gi|110668051|ref|YP_657862.1| - 0.0056 16.5 0.0 0.0097 15.7 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Arc PF03869.9 gi|110668051|ref|YP_657862.1| - 0.032 13.8 0.0 0.059 12.9 0.0 1.5 1 0 0 1 1 1 0 Arc-like DNA binding domain SWIM PF04434.12 gi|110668053|ref|YP_657864.1| - 0.047 13.1 0.2 0.1 12.1 0.1 1.5 1 1 0 1 1 1 0 SWIM zinc finger Trypan_PARP PF05887.6 gi|110668053|ref|YP_657864.1| - 2 8.2 5.9 2.8 7.7 4.1 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) DUF1469 PF07332.6 gi|110668054|ref|YP_657865.1| - 0.39 10.4 9.6 0.58 9.8 6.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1469) Gemini_mov PF01708.11 gi|110668054|ref|YP_657865.1| - 4.7 6.8 5.7 1.8 8.1 2.0 1.6 1 1 1 2 2 2 0 Geminivirus putative movement protein SecE PF00584.15 gi|110668055|ref|YP_657866.1| - 4.4 6.9 6.9 0.45 10.1 0.4 2.0 2 0 0 2 2 2 0 SecE/Sec61-gamma subunits of protein translocation complex PilP PF04351.8 gi|110668056|ref|YP_657867.1| - 0.029 14.2 0.0 0.042 13.7 0.0 1.3 1 0 0 1 1 1 0 Pilus assembly protein, PilP Glyco_trans_2_3 PF13632.1 gi|110668057|ref|YP_657868.1| - 1.8e-11 44.1 7.9 1.8e-11 44.1 5.5 2.7 2 1 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.1 gi|110668057|ref|YP_657868.1| - 9.1e-11 41.9 1.1 2.1e-10 40.8 0.8 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Chitin_synth_2 PF03142.10 gi|110668057|ref|YP_657868.1| - 0.028 12.8 0.1 0.044 12.1 0.0 1.3 1 0 0 1 1 1 0 Chitin synthase Tetraspannin PF00335.15 gi|110668057|ref|YP_657868.1| - 0.072 12.3 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Tetraspanin family AAA_10 PF12846.2 gi|110668058|ref|YP_657869.1| - 1.5e-08 34.4 0.0 2e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain DUF853 PF05872.7 gi|110668058|ref|YP_657869.1| - 0.0012 17.2 0.0 0.0014 17.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF853) Zot PF05707.7 gi|110668058|ref|YP_657869.1| - 0.053 12.9 0.0 0.076 12.4 0.0 1.3 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) Pentapeptide PF00805.17 gi|110668059|ref|YP_657870.1| - 1e-13 50.1 16.8 7.4e-05 21.8 0.7 4.1 3 1 2 5 5 5 4 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.1 gi|110668059|ref|YP_657870.1| - 4.8e-10 39.1 3.3 5.9e-06 26.0 0.6 2.4 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.1 gi|110668059|ref|YP_657870.1| - 3.5e-07 29.9 4.1 0.034 14.0 0.5 3.7 2 2 1 3 3 3 3 Pentapeptide repeats (9 copies) Tic20 PF09685.5 gi|110668060|ref|YP_657871.1| - 3.2e-27 94.6 4.4 3.5e-27 94.5 3.1 1.0 1 0 0 1 1 1 1 Tic20-like protein DUF4153 PF13687.1 gi|110668060|ref|YP_657871.1| - 0.0016 18.0 3.6 0.0029 17.1 2.6 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4153) DUF1345 PF07077.6 gi|110668060|ref|YP_657871.1| - 0.088 12.3 0.7 0.1 12.1 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1345) DUF3753 PF12575.3 gi|110668060|ref|YP_657871.1| - 0.76 9.6 8.1 0.17 11.6 2.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3753) DUF912 PF06024.7 gi|110668060|ref|YP_657871.1| - 10 6.2 6.5 6.4 6.8 3.4 1.6 1 1 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF912) DUF4397 PF14344.1 gi|110668062|ref|YP_657873.1| - 3.4e-96 317.9 27.2 7e-40 136.1 3.1 4.1 3 1 1 4 4 4 4 Domain of unknown function (DUF4397) AlgF PF11182.3 gi|110668062|ref|YP_657873.1| - 8.5e-08 32.0 2.1 8.1e-05 22.3 0.1 2.9 2 1 0 2 2 2 2 Alginate O-acetyl transferase AlgF DUF2846 PF11008.3 gi|110668062|ref|YP_657873.1| - 0.011 15.5 0.0 36 4.2 0.0 4.0 3 2 0 4 4 4 0 Protein of unknown function (DUF2846) Y_Y_Y PF07495.8 gi|110668062|ref|YP_657873.1| - 0.023 14.4 0.0 2.9 7.6 0.0 2.9 3 0 0 3 3 3 0 Y_Y_Y domain GDPD PF03009.12 gi|110668063|ref|YP_657874.1| - 8.6e-23 81.1 0.3 1.1e-13 51.2 0.4 2.1 1 1 1 2 2 2 2 Glycerophosphoryl diester phosphodiesterase family MarR_2 PF12802.2 gi|110668064|ref|YP_657875.1| - 2.5e-07 30.2 0.0 3.6e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|110668064|ref|YP_657875.1| - 0.0001 22.0 0.0 0.00022 20.9 0.0 1.6 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|110668064|ref|YP_657875.1| - 0.00016 21.7 0.0 0.00027 21.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator DUF2250 PF10007.4 gi|110668064|ref|YP_657875.1| - 0.00017 21.4 0.0 0.00021 21.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.14 gi|110668064|ref|YP_657875.1| - 0.00048 19.7 0.0 0.00081 19.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|110668064|ref|YP_657875.1| - 0.00051 19.3 0.1 0.0011 18.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|110668064|ref|YP_657875.1| - 0.00065 19.9 0.1 0.0011 19.2 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|110668064|ref|YP_657875.1| - 0.0012 18.4 0.0 0.0018 17.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|110668064|ref|YP_657875.1| - 0.0017 18.2 0.0 0.0035 17.2 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_45 PF14947.1 gi|110668064|ref|YP_657875.1| - 0.0018 18.0 0.0 0.0024 17.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_36 PF13730.1 gi|110668064|ref|YP_657875.1| - 0.0031 17.6 0.0 0.0045 17.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|110668064|ref|YP_657875.1| - 0.0045 16.5 0.2 0.012 15.2 0.0 1.6 2 0 0 2 2 2 1 Homeodomain-like domain MarR PF01047.17 gi|110668064|ref|YP_657875.1| - 0.0047 16.6 0.0 0.0078 15.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|110668064|ref|YP_657875.1| - 0.011 15.3 0.1 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_20 PF12840.2 gi|110668064|ref|YP_657875.1| - 0.017 14.9 0.0 0.026 14.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|110668064|ref|YP_657875.1| - 0.026 14.0 0.1 0.05 13.1 0.1 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit PaaX PF07848.7 gi|110668064|ref|YP_657875.1| - 0.052 13.5 0.2 0.13 12.3 0.2 1.6 1 1 0 1 1 1 0 PaaX-like protein HTH_29 PF13551.1 gi|110668064|ref|YP_657875.1| - 0.054 13.6 0.2 0.065 13.3 0.1 1.2 1 0 0 1 1 1 0 Winged helix-turn helix FeoC PF09012.5 gi|110668064|ref|YP_657875.1| - 0.085 12.5 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_Tnp_ISL3 PF13542.1 gi|110668064|ref|YP_657875.1| - 0.12 11.5 0.0 0.2 10.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 z-alpha PF02295.12 gi|110668064|ref|YP_657875.1| - 0.13 12.0 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain Glyco_tranf_2_4 PF13704.1 gi|110668064|ref|YP_657875.1| - 0.67 10.2 7.9 0.53 10.6 1.2 3.0 1 1 1 2 2 2 0 Glycosyl transferase family 2 PemK PF02452.12 gi|110668065|ref|YP_657876.1| - 0.023 14.8 0.0 0.024 14.8 0.0 1.2 1 0 0 1 1 1 0 PemK-like protein DUF892 PF05974.7 gi|110668068|ref|YP_657879.1| - 6.1e-30 104.1 2.1 7.3e-30 103.8 1.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF892) Chromate_transp PF02417.10 gi|110668070|ref|YP_657881.1| - 5.9e-75 250.5 42.6 4.3e-38 130.5 8.1 2.6 2 1 1 3 3 3 2 Chromate transporter DUF423 PF04241.10 gi|110668070|ref|YP_657881.1| - 0.035 14.0 0.0 0.035 14.0 0.0 3.5 4 0 0 4 4 4 0 Protein of unknown function (DUF423) DUF1129 PF06570.6 gi|110668070|ref|YP_657881.1| - 4.8 6.4 10.6 0.11 11.8 2.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) DUF1814 PF08843.6 gi|110668071|ref|YP_657882.1| - 7.2e-36 124.1 0.1 8.3e-36 123.9 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF1814) DUF3368 PF11848.3 gi|110668073|ref|YP_657884.1| - 9.3e-14 50.7 0.0 4.7e-13 48.4 0.0 2.1 3 0 0 3 3 3 1 Domain of unknown function (DUF3368) UPF0175 PF03683.8 gi|110668074|ref|YP_657885.1| - 5.1e-16 57.9 0.6 5.1e-16 57.9 0.4 1.5 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.16 gi|110668074|ref|YP_657885.1| - 0.00015 21.4 2.8 0.00038 20.2 0.7 2.5 3 1 1 4 4 4 1 Ribbon-helix-helix protein, copG family UPF0081 PF03652.10 gi|110668074|ref|YP_657885.1| - 0.086 12.9 0.1 0.12 12.4 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0081) Zn_Tnp_IS1595 PF12760.2 gi|110668076|ref|YP_657887.1| - 0.16 11.8 1.7 0.67 9.8 0.4 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|110668076|ref|YP_657887.1| - 0.77 9.4 2.8 0.28 10.8 0.2 1.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DUF2202 PF09968.4 gi|110668077|ref|YP_657888.1| - 0.037 13.6 1.2 0.048 13.3 0.8 1.3 1 1 0 1 1 1 0 Uncharacterized protein domain (DUF2202) NYD-SP28 PF14772.1 gi|110668077|ref|YP_657888.1| - 0.07 13.2 2.8 0.18 11.9 1.7 1.8 1 1 1 2 2 2 0 Sperm tail TBPIP PF07106.8 gi|110668077|ref|YP_657888.1| - 0.093 12.2 2.9 0.17 11.4 1.9 1.5 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF1843 PF08898.5 gi|110668077|ref|YP_657888.1| - 1.1 9.3 8.0 0.86 9.6 1.0 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF1843) PIN_3 PF13470.1 gi|110668078|ref|YP_657889.1| - 0.0016 19.0 0.9 0.0022 18.6 0.6 1.2 1 0 0 1 1 1 1 PIN domain Rnk_N PF14760.1 gi|110668078|ref|YP_657889.1| - 0.26 11.3 3.2 9 6.4 0.2 3.1 3 1 0 3 3 3 0 Rnk N-terminus zf-ribbon_3 PF13248.1 gi|110668079|ref|YP_657890.1| - 0.022 13.9 1.1 0.68 9.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF2387 PF09526.5 gi|110668079|ref|YP_657890.1| - 0.082 12.8 2.5 0.17 11.8 0.1 2.2 2 1 0 2 2 2 0 Probable metal-binding protein (DUF2387) Nudix_N_2 PF14803.1 gi|110668079|ref|YP_657890.1| - 0.53 10.0 3.8 0.44 10.2 0.3 2.3 3 0 0 3 3 3 0 Nudix N-terminal Mso1_Sec1_bdg PF14475.1 gi|110668080|ref|YP_657891.1| - 0.063 12.6 0.1 0.12 11.8 0.1 1.5 1 0 0 1 1 1 0 Sec1-binding region of Mso1 DrsE PF02635.10 gi|110668082|ref|YP_657893.1| - 5.3e-06 26.4 0.0 6.6e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family PAS_9 PF13426.1 gi|110668083|ref|YP_657894.1| - 2.7e-26 91.9 10.6 9.7e-09 35.5 0.0 5.4 5 0 0 5 5 5 4 PAS domain PAS_4 PF08448.5 gi|110668083|ref|YP_657894.1| - 1.1e-24 86.5 7.2 1.6e-11 44.2 0.1 4.8 4 0 0 4 4 4 3 PAS fold Response_reg PF00072.19 gi|110668083|ref|YP_657894.1| - 5.3e-21 74.7 0.0 1.8e-20 72.9 0.0 2.0 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|110668083|ref|YP_657894.1| - 5.6e-20 71.1 0.3 1.6e-19 69.6 0.2 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|110668083|ref|YP_657894.1| - 1.5e-18 66.6 12.9 6.1e-11 42.2 0.1 5.1 6 0 0 6 6 6 3 PAS fold HisKA PF00512.20 gi|110668083|ref|YP_657894.1| - 7.5e-17 61.0 0.8 7.5e-17 61.0 0.6 4.0 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|110668083|ref|YP_657894.1| - 1.4e-11 44.1 12.5 5.2e-05 22.9 0.0 5.9 6 0 0 6 6 6 3 PAS fold PAS_8 PF13188.1 gi|110668083|ref|YP_657894.1| - 1.9e-08 33.8 0.0 9.1e-05 22.1 0.0 3.5 3 0 0 3 3 3 2 PAS domain HATPase_c_5 PF14501.1 gi|110668083|ref|YP_657894.1| - 7.5e-05 22.3 1.0 0.00063 19.4 0.0 2.9 3 0 0 3 3 3 1 GHKL domain HATPase_c_2 PF13581.1 gi|110668083|ref|YP_657894.1| - 0.0001 22.0 0.2 0.00043 20.0 0.1 2.1 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|110668083|ref|YP_657894.1| - 0.0034 17.0 4.2 0.012 15.2 2.7 2.0 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Zn-ribbon_8 PF09723.5 gi|110668084|ref|YP_657895.1| - 0.00034 20.4 0.4 0.24 11.3 0.1 2.1 2 0 0 2 2 2 2 Zinc ribbon domain DNA_ligase_ZBD PF03119.11 gi|110668084|ref|YP_657895.1| - 0.0017 17.9 1.3 0.23 11.1 0.0 2.2 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain UPF0547 PF10571.4 gi|110668084|ref|YP_657895.1| - 0.0033 17.0 1.2 0.68 9.6 0.1 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zinc-ribbons_6 PF07191.7 gi|110668084|ref|YP_657895.1| - 0.0047 16.6 1.3 0.29 10.9 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbons DZR PF12773.2 gi|110668084|ref|YP_657895.1| - 0.006 16.3 0.8 0.012 15.4 0.6 1.5 1 1 0 1 1 1 1 Double zinc ribbon zf-IS66 PF13005.2 gi|110668084|ref|YP_657895.1| - 0.0063 16.4 1.1 0.18 11.7 0.1 2.1 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 zf-C2H2 PF00096.21 gi|110668084|ref|YP_657895.1| - 0.0078 16.4 1.7 0.53 10.7 0.0 2.2 2 0 0 2 2 2 1 Zinc finger, C2H2 type CpXC PF14353.1 gi|110668084|ref|YP_657895.1| - 0.015 15.2 0.4 0.035 14.0 0.3 1.6 1 1 0 1 1 1 0 CpXC protein zf-RING_3 PF14369.1 gi|110668084|ref|YP_657895.1| - 0.022 14.7 1.9 8.8 6.4 0.1 2.9 3 0 0 3 3 3 0 zinc-finger zf-LITAF-like PF10601.4 gi|110668084|ref|YP_657895.1| - 0.03 14.1 0.1 0.93 9.4 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zf-C3HC4_3 PF13920.1 gi|110668084|ref|YP_657895.1| - 0.036 13.7 0.6 3 7.5 0.1 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-RING_4 PF14570.1 gi|110668084|ref|YP_657895.1| - 0.036 13.6 0.7 4.7 6.8 0.0 2.2 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain zf-TFIIB PF13453.1 gi|110668084|ref|YP_657895.1| - 0.038 13.1 1.8 1.4 8.2 0.2 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-ribbon_3 PF13248.1 gi|110668084|ref|YP_657895.1| - 0.04 13.1 0.4 5.7 6.2 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF2256 PF10013.4 gi|110668084|ref|YP_657895.1| - 0.045 13.4 0.6 3.7 7.3 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) TF_Zn_Ribbon PF08271.7 gi|110668084|ref|YP_657895.1| - 0.075 12.3 1.4 2.2 7.6 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Auto_anti-p27 PF06677.7 gi|110668084|ref|YP_657895.1| - 0.099 12.4 0.9 6 6.7 0.0 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF329 PF03884.9 gi|110668084|ref|YP_657895.1| - 0.14 11.7 2.0 5.5 6.6 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF329) Sgf11 PF08209.6 gi|110668084|ref|YP_657895.1| - 0.21 10.9 1.9 0.64 9.3 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-H2C2_2 PF13465.1 gi|110668084|ref|YP_657895.1| - 0.24 11.7 2.3 5.2 7.5 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-C4_Topoisom PF01396.14 gi|110668084|ref|YP_657895.1| - 0.28 10.7 3.2 5.6 6.5 0.1 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF3039 PF11238.3 gi|110668084|ref|YP_657895.1| - 0.34 10.4 1.9 4.1 6.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3039) Rubredoxin PF00301.15 gi|110668084|ref|YP_657895.1| - 0.4 10.5 2.3 15 5.5 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin 7tm_7 PF08395.7 gi|110668086|ref|YP_657897.1| - 0.079 11.9 0.0 0.079 11.9 0.0 2.5 3 0 0 3 3 3 0 7tm Chemosensory receptor PIN PF01850.16 gi|110668088|ref|YP_657899.1| - 5.8e-13 49.2 0.1 7.1e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 PIN domain PDDEXK_1 PF12705.2 gi|110668089|ref|YP_657900.1| - 3.2e-17 62.7 0.3 1.1e-16 61.0 0.0 2.0 2 1 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Haemagg_act PF05860.8 gi|110668089|ref|YP_657900.1| - 0.11 12.2 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 haemagglutination activity domain UvrD-helicase PF00580.16 gi|110668090|ref|YP_657901.1| - 4.6e-50 170.7 0.0 1.3e-49 169.2 0.0 1.8 2 1 0 2 2 2 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|110668090|ref|YP_657901.1| - 2.6e-33 115.9 0.0 6.8e-17 61.9 0.0 2.3 1 1 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|110668090|ref|YP_657901.1| - 2e-13 49.9 0.0 1.3e-12 47.3 0.0 2.3 3 0 0 3 3 3 1 Part of AAA domain PDDEXK_1 PF12705.2 gi|110668090|ref|YP_657901.1| - 1.7e-08 34.1 0.7 1.2e-07 31.3 0.1 2.4 2 1 0 2 2 2 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.1 gi|110668090|ref|YP_657901.1| - 1.3e-07 31.6 0.3 0.011 15.9 0.1 3.2 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.1 gi|110668090|ref|YP_657901.1| - 0.00031 20.3 0.0 0.00072 19.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_12 PF13087.1 gi|110668090|ref|YP_657901.1| - 0.00092 18.6 0.3 0.033 13.5 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_11 PF13086.1 gi|110668090|ref|YP_657901.1| - 0.018 14.6 0.9 2.5 7.6 0.0 2.6 3 0 0 3 3 3 0 AAA domain DUF2800 PF10926.3 gi|110668090|ref|YP_657901.1| - 0.034 13.2 0.1 0.1 11.7 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2800) Viral_helicase1 PF01443.13 gi|110668090|ref|YP_657901.1| - 0.047 13.2 1.7 21 4.5 0.0 3.7 4 0 0 4 4 4 0 Viral (Superfamily 1) RNA helicase Metallophos PF00149.23 gi|110668091|ref|YP_657902.1| - 4.5e-09 35.9 0.1 7.8e-09 35.2 0.1 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|110668091|ref|YP_657902.1| - 0.013 15.3 0.0 0.099 12.4 0.0 2.1 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain HNH_2 PF13391.1 gi|110668092|ref|YP_657903.1| - 2.1e-09 36.9 0.3 4.2e-09 36.0 0.2 1.5 1 0 0 1 1 1 1 HNH endonuclease DUF4401 PF14351.1 gi|110668093|ref|YP_657904.1| - 0.0061 15.5 2.3 0.012 14.6 1.6 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4401) DUF751 PF05421.6 gi|110668093|ref|YP_657904.1| - 0.007 16.6 0.4 0.007 16.6 0.3 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF751) DUF1430 PF07242.6 gi|110668093|ref|YP_657904.1| - 0.024 14.6 0.5 0.041 13.9 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1430) FUSC_2 PF13515.1 gi|110668093|ref|YP_657904.1| - 1.3 8.9 8.7 0.15 11.9 0.2 2.1 1 1 1 2 2 2 0 Fusaric acid resistance protein-like DUF4231 PF14015.1 gi|110668093|ref|YP_657904.1| - 1.9 8.5 8.3 7.6 6.5 5.8 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) DUF3040 PF11239.3 gi|110668093|ref|YP_657904.1| - 2.5 8.2 10.3 2.4 8.2 1.2 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3040) Lon_C PF05362.8 gi|110668094|ref|YP_657905.1| - 3e-15 56.0 0.0 3.4e-15 55.9 0.0 1.0 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.1 gi|110668094|ref|YP_657905.1| - 0.00038 19.9 0.0 0.0005 19.5 0.0 1.2 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase Reo_P9 PF06043.6 gi|110668094|ref|YP_657905.1| - 0.15 11.1 0.0 0.19 10.7 0.0 1.1 1 0 0 1 1 1 0 Reovirus P9-like family OrfB_IS605 PF01385.14 gi|110668095|ref|YP_657906.1| - 6.6e-28 97.6 2.1 6.6e-28 97.6 1.4 1.7 1 1 1 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|110668095|ref|YP_657906.1| - 1.4e-20 72.6 0.5 9.1e-20 70.1 0.3 2.2 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|110668095|ref|YP_657906.1| - 9.3e-05 21.6 0.1 0.00019 20.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain IncFII_repA PF02387.10 gi|110668095|ref|YP_657906.1| - 0.09 11.9 3.1 0.066 12.3 0.7 1.7 2 0 0 2 2 2 0 IncFII RepA protein family DZR PF12773.2 gi|110668095|ref|YP_657906.1| - 0.51 10.2 4.4 0.98 9.2 3.0 1.5 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|110668095|ref|YP_657906.1| - 1.8 7.8 4.9 4.4 6.6 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Antitoxin-MazE PF04014.13 gi|110668096|ref|YP_657907.1| - 3.4e-10 39.4 0.2 4.2e-10 39.1 0.1 1.1 1 0 0 1 1 1 1 Antidote-toxin recognition MazE TrmB PF01978.14 gi|110668097|ref|YP_657908.1| - 2.1e-07 30.5 1.6 8.3e-07 28.6 0.1 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.7 gi|110668097|ref|YP_657908.1| - 0.02 14.4 0.4 0.3 10.6 0.1 2.4 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Penicillinase_R PF03965.11 gi|110668097|ref|YP_657908.1| - 0.027 14.5 0.7 0.052 13.6 0.0 1.8 2 0 0 2 2 2 0 Penicillinase repressor DUF2250 PF10007.4 gi|110668097|ref|YP_657908.1| - 0.048 13.5 0.3 13 5.8 0.0 2.6 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.17 gi|110668097|ref|YP_657908.1| - 0.08 12.6 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.5 gi|110668097|ref|YP_657908.1| - 0.1 12.2 0.1 0.24 11.0 0.1 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.14 gi|110668099|ref|YP_657910.1| - 0.00065 19.3 0.0 0.0016 18.1 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FaeA PF04703.7 gi|110668099|ref|YP_657910.1| - 0.038 14.1 0.0 0.066 13.3 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein Rrf2 PF02082.15 gi|110668099|ref|YP_657910.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.1 gi|110668099|ref|YP_657910.1| - 0.13 11.7 0.3 0.35 10.2 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|110668099|ref|YP_657910.1| - 0.7 10.2 3.3 1 9.7 0.1 2.7 3 0 0 3 3 3 0 Winged helix DNA-binding domain TSC22 PF01166.13 gi|110668102|ref|YP_657913.1| - 0.13 12.2 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 TSC-22/dip/bun family HTH_20 PF12840.2 gi|110668103|ref|YP_657914.1| - 0.0067 16.1 0.1 0.01 15.6 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2887 PF11103.3 gi|110668103|ref|YP_657914.1| - 0.053 13.1 0.6 4.6 6.7 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2887) DUF2250 PF10007.4 gi|110668103|ref|YP_657914.1| - 0.13 12.2 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF1524 PF07510.6 gi|110668104|ref|YP_657915.1| - 2.7e-28 98.5 4.9 2.7e-28 98.5 3.4 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1524) DUF262 PF03235.9 gi|110668105|ref|YP_657916.1| - 3e-35 122.1 2.1 3.6e-35 121.9 1.5 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF262 DUF1381 PF07129.6 gi|110668105|ref|YP_657916.1| - 0.092 12.1 0.2 0.22 10.9 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1381) MarR_2 PF12802.2 gi|110668106|ref|YP_657917.1| - 3.8e-14 52.1 3.1 2.6e-08 33.3 0.6 2.6 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|110668106|ref|YP_657917.1| - 3.8e-11 42.5 0.1 1.2e-05 24.9 0.1 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|110668106|ref|YP_657917.1| - 4.5e-11 42.2 0.1 3.3e-05 23.4 0.2 2.5 2 0 0 2 2 2 2 MarR family HTH_IclR PF09339.5 gi|110668106|ref|YP_657917.1| - 2e-10 40.0 6.0 6.3e-07 28.8 0.1 2.6 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|110668106|ref|YP_657917.1| - 3.6e-10 39.4 1.6 0.00061 19.5 0.0 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_27 PF13463.1 gi|110668106|ref|YP_657917.1| - 9.6e-09 35.4 3.2 0.0001 22.5 0.9 2.9 3 0 0 3 3 3 2 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|110668106|ref|YP_657917.1| - 1.6e-06 28.1 0.1 0.0089 16.1 0.1 2.5 2 0 0 2 2 2 2 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|110668106|ref|YP_657917.1| - 2.5e-06 27.1 0.2 0.078 12.7 0.0 2.6 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|110668106|ref|YP_657917.1| - 1.7e-05 24.6 0.0 0.14 12.1 0.0 2.4 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain HTH_29 PF13551.1 gi|110668106|ref|YP_657917.1| - 2.7e-05 24.2 0.6 0.011 15.9 0.1 2.4 1 1 1 2 2 2 1 Winged helix-turn helix HTH_24 PF13412.1 gi|110668106|ref|YP_657917.1| - 5.8e-05 22.4 0.1 0.01 15.2 0.0 2.8 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|110668106|ref|YP_657917.1| - 0.00043 19.6 0.4 0.26 10.7 0.0 3.2 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|110668106|ref|YP_657917.1| - 0.001 18.6 0.0 0.16 11.6 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|110668106|ref|YP_657917.1| - 0.0022 17.6 0.0 0.079 12.6 0.0 3.0 3 0 0 3 3 3 1 HTH domain Penicillinase_R PF03965.11 gi|110668106|ref|YP_657917.1| - 0.0049 16.9 0.3 0.68 10.0 0.1 2.4 2 0 0 2 2 2 1 Penicillinase repressor Phage_rep_org_N PF09681.5 gi|110668106|ref|YP_657917.1| - 0.014 14.9 0.0 0.86 9.1 0.0 2.5 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF2250 PF10007.4 gi|110668106|ref|YP_657917.1| - 0.015 15.2 0.0 0.35 10.8 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_23 PF13384.1 gi|110668106|ref|YP_657917.1| - 0.015 14.9 1.1 0.5 10.0 0.1 3.2 3 0 0 3 3 3 0 Homeodomain-like domain HTH_38 PF13936.1 gi|110668106|ref|YP_657917.1| - 0.034 13.7 0.0 0.24 10.9 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_30 PF13556.1 gi|110668106|ref|YP_657917.1| - 0.036 13.6 1.5 1.6 8.3 0.1 2.7 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain Cdc6_C PF09079.6 gi|110668106|ref|YP_657917.1| - 0.04 13.6 0.1 0.15 11.8 0.1 2.0 1 0 0 1 1 1 0 CDC6, C terminal NTP_transf_5 PF14907.1 gi|110668107|ref|YP_657918.1| - 0.077 12.3 0.1 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised nucleotidyltransferase DUF2204 PF09970.4 gi|110668107|ref|YP_657918.1| - 0.11 12.0 0.1 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 Nucleotidyl transferase of unknown function (DUF2204) MarR_2 PF12802.2 gi|110668108|ref|YP_657919.1| - 0.00023 20.7 0.3 0.00045 19.8 0.2 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|110668108|ref|YP_657919.1| - 0.0022 17.6 0.1 0.0048 16.5 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|110668108|ref|YP_657919.1| - 0.026 14.8 0.4 0.058 13.7 0.1 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain FlaG PF03646.10 gi|110668108|ref|YP_657919.1| - 0.06 13.4 0.5 0.14 12.3 0.1 1.7 2 0 0 2 2 2 0 FlaG protein Phage_term_sma PF07141.6 gi|110668108|ref|YP_657919.1| - 0.067 12.7 0.0 0.09 12.3 0.0 1.2 1 0 0 1 1 1 0 Putative bacteriophage terminase small subunit Zn_Tnp_IS1595 PF12760.2 gi|110668109|ref|YP_657920.1| - 0.015 15.0 1.2 0.07 12.9 0.3 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain PHD PF00628.24 gi|110668109|ref|YP_657920.1| - 0.22 11.2 7.3 0.91 9.2 3.2 2.7 2 1 1 3 3 3 0 PHD-finger ZZ PF00569.12 gi|110668109|ref|YP_657920.1| - 0.37 10.3 2.2 6.4 6.4 0.0 3.0 3 0 0 3 3 3 0 Zinc finger, ZZ type Nudix_N_2 PF14803.1 gi|110668109|ref|YP_657920.1| - 2.6 7.7 9.8 0.21 11.3 2.6 2.3 2 1 0 2 2 2 0 Nudix N-terminal FAM74 PF15026.1 gi|110668111|ref|YP_657922.1| - 0.038 13.6 0.0 0.067 12.8 0.0 1.4 1 0 0 1 1 1 0 FAM74 protein TrmB PF01978.14 gi|110668113|ref|YP_657924.1| - 0.00067 19.3 0.0 0.0013 18.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB AviRa PF11599.3 gi|110668113|ref|YP_657924.1| - 0.011 14.8 0.0 0.013 14.4 0.0 1.1 1 0 0 1 1 1 0 RRNA methyltransferase AviRa HTH_20 PF12840.2 gi|110668113|ref|YP_657924.1| - 0.015 15.1 0.0 0.035 13.9 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain HeLo PF14479.1 gi|110668113|ref|YP_657924.1| - 0.057 13.1 0.2 0.071 12.8 0.1 1.2 1 0 0 1 1 1 0 Prion-inhibition and propagation Matrilin_ccoil PF10393.4 gi|110668113|ref|YP_657924.1| - 0.066 12.5 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin HTH_11 PF08279.7 gi|110668113|ref|YP_657924.1| - 0.067 12.8 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 HTH domain PRiA4_ORF3 PF07929.6 gi|110668115|ref|YP_657926.1| - 0.031 13.7 0.0 0.032 13.6 0.0 1.1 1 0 0 1 1 1 0 Plasmid pRiA4b ORF-3-like protein DUF790 PF05626.6 gi|110668116|ref|YP_657927.1| - 6.2e-135 449.5 0.0 7e-135 449.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) ResIII PF04851.10 gi|110668117|ref|YP_657928.1| - 2.1e-24 86.3 0.0 9.1e-24 84.2 0.0 2.1 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|110668117|ref|YP_657928.1| - 8.7e-20 70.3 0.1 1.9e-19 69.2 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|110668117|ref|YP_657928.1| - 3.4e-12 46.1 0.0 8.8e-12 44.8 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|110668117|ref|YP_657928.1| - 0.00029 20.9 0.0 0.0014 18.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|110668117|ref|YP_657928.1| - 0.0026 17.2 0.1 0.059 12.7 0.0 2.6 3 0 0 3 3 3 1 IstB-like ATP binding protein Zot PF05707.7 gi|110668117|ref|YP_657928.1| - 0.012 15.0 0.0 0.025 14.0 0.0 1.6 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) PhoH PF02562.11 gi|110668117|ref|YP_657928.1| - 0.012 14.8 0.0 0.022 14.0 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Helicase_C_2 PF13307.1 gi|110668117|ref|YP_657928.1| - 0.07 13.0 0.2 2 8.3 0.0 3.1 3 0 0 3 3 3 0 Helicase C-terminal domain Med9 PF07544.8 gi|110668119|ref|YP_657930.1| - 0.012 15.3 0.7 0.044 13.5 0.5 2.0 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 DivIC PF04977.10 gi|110668119|ref|YP_657930.1| - 0.018 14.4 0.3 0.056 12.9 0.2 1.9 1 0 0 1 1 1 0 Septum formation initiator DUF972 PF06156.8 gi|110668119|ref|YP_657930.1| - 0.23 11.8 1.2 0.44 10.9 0.2 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF972) DUF4140 PF13600.1 gi|110668119|ref|YP_657930.1| - 0.86 10.0 5.5 0.9 10.0 2.4 2.1 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) IncA PF04156.9 gi|110668119|ref|YP_657930.1| - 1.6 8.2 6.3 0.24 10.9 1.4 1.7 2 0 0 2 2 2 0 IncA protein ADIP PF11559.3 gi|110668119|ref|YP_657930.1| - 3.2 7.6 6.6 0.36 10.7 0.6 2.1 2 1 1 3 3 3 0 Afadin- and alpha -actinin-Binding Penicillinase_R PF03965.11 gi|110668122|ref|YP_657933.1| - 0.001 19.1 0.0 0.002 18.1 0.0 1.5 1 1 0 1 1 1 1 Penicillinase repressor GPP34 PF05719.6 gi|110668122|ref|YP_657933.1| - 0.08 12.9 0.6 0.12 12.4 0.4 1.4 1 1 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) GvpK PF05121.7 gi|110668122|ref|YP_657933.1| - 0.11 12.2 0.5 0.81 9.5 0.1 2.0 1 1 1 2 2 2 0 Gas vesicle protein K DctM PF06808.7 gi|110668123|ref|YP_657934.1| - 1.3e-109 366.5 47.1 1.6e-109 366.2 32.6 1.0 1 0 0 1 1 1 1 DctM-like transporters YrhC PF14143.1 gi|110668123|ref|YP_657934.1| - 1.2 9.1 0.0 1.2 9.1 0.0 3.9 5 0 0 5 5 5 0 YrhC-like protein DctQ PF04290.7 gi|110668124|ref|YP_657935.1| - 8.8e-19 67.5 2.4 1.3e-18 67.0 1.7 1.3 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporters, DctQ component Tetraspannin PF00335.15 gi|110668124|ref|YP_657935.1| - 3.4 6.8 7.1 1.2 8.4 0.2 2.4 2 1 0 2 2 2 0 Tetraspanin family SBP_bac_7 PF03480.8 gi|110668125|ref|YP_657936.1| - 6.3e-45 153.4 0.0 7.4e-45 153.2 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 DegV PF02645.11 gi|110668125|ref|YP_657936.1| - 0.04 13.0 0.3 0.076 12.0 0.2 1.4 1 0 0 1 1 1 0 Uncharacterised protein, DegV family COG1307 Glyoxalase_2 PF12681.2 gi|110668126|ref|YP_657937.1| - 6.7e-10 39.5 0.2 9.5e-10 39.0 0.1 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|110668126|ref|YP_657937.1| - 7.3e-10 38.9 1.0 1.8e-09 37.6 0.3 1.9 2 1 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|110668126|ref|YP_657937.1| - 0.00098 19.1 0.3 0.0016 18.4 0.2 1.4 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SoxE PF06525.6 gi|110668126|ref|YP_657937.1| - 0.15 11.3 0.0 0.22 10.7 0.0 1.2 1 0 0 1 1 1 0 Sulfocyanin (SoxE) SBF PF01758.11 gi|110668128|ref|YP_657939.1| - 9.3e-41 139.2 10.7 1.4e-40 138.7 7.4 1.3 1 0 0 1 1 1 1 Sodium Bile acid symporter family DUF4137 PF13593.1 gi|110668128|ref|YP_657939.1| - 1.6e-14 53.7 15.1 2.1e-14 53.3 10.4 1.1 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Mem_trans PF03547.13 gi|110668128|ref|YP_657939.1| - 0.021 13.1 15.1 0.039 12.2 4.0 2.7 2 1 1 3 3 3 0 Membrane transport protein FmdA_AmdA PF03069.10 gi|110668130|ref|YP_657941.1| - 4.5e-44 150.6 3.8 3.7e-22 78.5 0.4 2.1 1 1 1 2 2 2 2 Acetamidase/Formamidase family UPF0150 PF03681.10 gi|110668130|ref|YP_657941.1| - 0.027 14.1 0.6 3.9 7.1 0.3 3.1 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0150) TRAM PF01938.15 gi|110668130|ref|YP_657941.1| - 0.072 12.8 0.2 0.18 11.6 0.1 1.7 1 0 0 1 1 1 0 TRAM domain ANF_receptor PF01094.23 gi|110668131|ref|YP_657942.1| - 1.6e-13 50.2 1.5 1.9e-13 49.9 1.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region ABC_tran PF00005.22 gi|110668132|ref|YP_657943.1| - 5.3e-07 30.0 0.0 9.1e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110668132|ref|YP_657943.1| - 0.043 13.7 0.0 0.054 13.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|110668133|ref|YP_657944.1| - 1.2e-08 35.3 0.1 1.3e-08 35.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110668133|ref|YP_657944.1| - 0.00024 21.1 0.0 0.0003 20.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|110668133|ref|YP_657944.1| - 0.00059 19.3 0.0 0.00075 18.9 0.0 1.1 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|110668133|ref|YP_657944.1| - 0.00068 20.0 0.0 0.00068 20.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|110668133|ref|YP_657944.1| - 0.0034 16.6 0.0 0.0037 16.5 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain MutS_V PF00488.16 gi|110668133|ref|YP_657944.1| - 0.0038 16.6 0.0 0.0039 16.6 0.0 1.0 1 0 0 1 1 1 1 MutS domain V MobB PF03205.9 gi|110668133|ref|YP_657944.1| - 0.005 16.5 0.1 0.0058 16.3 0.1 1.2 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|110668133|ref|YP_657944.1| - 0.0093 15.3 0.0 0.0096 15.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.1 gi|110668133|ref|YP_657944.1| - 0.019 12.7 0.0 0.021 12.5 0.0 1.0 1 0 0 1 1 1 0 AAA domain Spore_IV_A PF09547.5 gi|110668133|ref|YP_657944.1| - 0.019 13.6 0.0 0.021 13.5 0.0 1.0 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) AAA_15 PF13175.1 gi|110668133|ref|YP_657944.1| - 0.026 13.5 0.0 0.026 13.5 0.0 1.0 1 0 0 1 1 1 0 AAA ATPase domain GTP_EFTU PF00009.22 gi|110668133|ref|YP_657944.1| - 0.048 13.0 0.1 0.062 12.7 0.1 1.1 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.18 gi|110668133|ref|YP_657944.1| - 0.072 13.0 0.0 0.095 12.6 0.0 1.2 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|110668133|ref|YP_657944.1| - 0.084 12.2 0.2 0.09 12.2 0.1 1.1 1 0 0 1 1 1 0 AAA-like domain AAA_14 PF13173.1 gi|110668133|ref|YP_657944.1| - 0.11 12.3 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|110668133|ref|YP_657944.1| - 0.14 11.7 0.0 0.15 11.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|110668134|ref|YP_657945.1| - 1.3e-29 103.1 0.0 2e-29 102.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110668134|ref|YP_657945.1| - 6.1e-14 52.6 0.5 6.1e-12 46.0 0.4 2.1 1 1 0 1 1 1 1 AAA domain BCA_ABC_TP_C PF12399.3 gi|110668134|ref|YP_657945.1| - 5e-08 32.4 0.0 8.4e-08 31.7 0.0 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.1 gi|110668134|ref|YP_657945.1| - 4.4e-05 23.8 0.4 5.9e-05 23.4 0.3 1.3 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|110668134|ref|YP_657945.1| - 0.00019 20.7 2.2 0.12 11.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|110668134|ref|YP_657945.1| - 0.00051 19.5 1.4 0.002 17.6 0.5 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|110668134|ref|YP_657945.1| - 0.014 14.4 0.1 1.1 8.1 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|110668134|ref|YP_657945.1| - 0.025 14.7 0.9 0.081 13.0 0.6 2.0 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|110668134|ref|YP_657945.1| - 0.099 12.8 0.2 0.93 9.6 0.2 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MukB PF04310.7 gi|110668134|ref|YP_657945.1| - 0.14 11.4 0.1 0.24 10.7 0.1 1.4 1 0 0 1 1 1 0 MukB N-terminal BPD_transp_2 PF02653.11 gi|110668135|ref|YP_657946.1| - 9.1e-37 126.4 31.2 9.1e-37 126.4 21.6 1.8 2 1 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|110668136|ref|YP_657947.1| - 1.4e-33 116.0 45.8 2e-33 115.5 31.7 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component UPF0061 PF02696.9 gi|110668139|ref|YP_657950.1| - 1.5e-91 307.1 1.1 6e-89 298.5 0.7 2.0 1 1 0 1 1 1 1 Uncharacterized ACR, YdiU/UPF0061 family Phenyl_P_gamma PF09662.5 gi|110668139|ref|YP_657950.1| - 0.054 13.1 0.0 0.36 10.5 0.0 2.2 2 1 0 2 2 2 0 Phenylphosphate carboxylase gamma subunit (Phenyl_P_gamma) PemK PF02452.12 gi|110668140|ref|YP_657951.1| - 6.3e-24 84.3 0.1 7e-24 84.1 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein TrkA_C PF02080.16 gi|110668140|ref|YP_657951.1| - 0.074 12.6 0.3 0.24 11.0 0.0 2.0 2 1 1 3 3 3 0 TrkA-C domain MarR_2 PF12802.2 gi|110668142|ref|YP_657953.1| - 0.027 14.1 0.0 0.038 13.6 0.0 1.2 1 0 0 1 1 1 0 MarR family PemK PF02452.12 gi|110668144|ref|YP_657955.1| - 0.011 15.9 0.0 0.011 15.9 0.0 1.1 1 0 0 1 1 1 0 PemK-like protein FAD_binding_3 PF01494.14 gi|110668145|ref|YP_657956.1| - 5.1e-09 35.6 0.5 7.8e-08 31.7 0.4 2.0 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|110668145|ref|YP_657956.1| - 0.00033 19.8 3.4 0.0028 16.7 2.3 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|110668145|ref|YP_657956.1| - 0.006 15.2 0.0 0.58 8.7 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|110668145|ref|YP_657956.1| - 0.007 16.2 0.0 0.12 12.1 0.0 2.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|110668145|ref|YP_657956.1| - 0.048 12.5 0.2 0.096 11.5 0.1 1.5 2 0 0 2 2 2 0 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|110668145|ref|YP_657956.1| - 0.13 12.6 0.6 1 9.8 0.3 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|110668145|ref|YP_657956.1| - 0.15 10.8 2.0 4.3 6.0 0.8 2.3 1 1 1 2 2 2 0 FAD binding domain DUF4010 PF13194.1 gi|110668146|ref|YP_657957.1| - 1.4e-64 217.2 20.9 1.4e-64 217.2 14.5 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF4010) MFS_1 PF07690.11 gi|110668148|ref|YP_657959.1| - 9.7e-30 103.4 48.7 9.7e-30 103.4 33.8 1.5 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|110668148|ref|YP_657959.1| - 2.8e-05 23.8 3.5 0.00038 20.2 0.5 2.8 2 0 0 2 2 2 1 MFS_1 like family ESSS PF10183.4 gi|110668148|ref|YP_657959.1| - 4.9 7.5 6.2 0.67 10.3 0.7 2.4 2 1 0 2 2 2 0 ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) DUF4538 PF15061.1 gi|110668148|ref|YP_657959.1| - 9.7 5.5 8.1 12 5.2 0.3 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4538) Molybdopterin PF00384.17 gi|110668149|ref|YP_657960.1| - 9.8e-63 212.3 0.0 1.2e-62 212.0 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|110668149|ref|YP_657960.1| - 5.4e-16 58.3 0.1 1.3e-15 57.1 0.0 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|110668149|ref|YP_657960.1| - 2.3e-08 33.6 2.2 5.7e-08 32.4 1.5 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain NIR_SIR PF01077.17 gi|110668150|ref|YP_657961.1| - 7.4e-45 152.1 0.1 1.2e-29 102.6 0.0 2.4 3 0 0 3 3 3 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|110668150|ref|YP_657961.1| - 3.4e-32 109.8 0.1 4.2e-15 55.1 0.0 3.1 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain Molybdopterin PF00384.17 gi|110668151|ref|YP_657962.1| - 1e-57 195.8 0.0 1.2e-57 195.5 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|110668151|ref|YP_657962.1| - 1.1e-10 41.2 0.3 6.6e-10 38.7 0.2 2.1 1 1 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|110668151|ref|YP_657962.1| - 1.2e-07 31.3 0.7 3.1e-07 30.0 0.5 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain DUF2993 PF11209.3 gi|110668152|ref|YP_657963.1| - 0.06 13.2 0.6 0.073 12.9 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2993) Acetyltransf_10 PF13673.1 gi|110668154|ref|YP_657965.1| - 0.00026 21.0 0.0 0.00053 20.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|110668154|ref|YP_657965.1| - 0.0022 17.9 0.0 0.0047 16.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|110668154|ref|YP_657965.1| - 0.0048 16.9 0.0 0.013 15.5 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Zip PF02535.17 gi|110668156|ref|YP_657967.1| - 4.9e-06 25.7 18.8 4.9e-06 25.7 13.0 2.1 1 1 1 2 2 2 2 ZIP Zinc transporter DUF3488 PF11992.3 gi|110668156|ref|YP_657967.1| - 0.93 8.0 8.3 0.96 8.0 3.3 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3488) SnoaL_4 PF13577.1 gi|110668157|ref|YP_657968.1| - 6.1e-05 22.9 0.1 8.9e-05 22.3 0.1 1.5 1 1 0 1 1 1 1 SnoaL-like domain SnoaL_2 PF12680.2 gi|110668157|ref|YP_657968.1| - 0.0021 18.4 0.1 0.0027 18.1 0.1 1.1 1 0 0 1 1 1 1 SnoaL-like domain NTF2 PF02136.15 gi|110668157|ref|YP_657968.1| - 0.02 15.2 0.0 0.069 13.5 0.0 1.7 1 1 0 2 2 2 0 Nuclear transport factor 2 (NTF2) domain GSH_synth_ATP PF03917.12 gi|110668157|ref|YP_657968.1| - 0.13 10.7 0.0 0.15 10.6 0.0 1.1 1 0 0 1 1 1 0 Eukaryotic glutathione synthase, ATP binding domain NikR_C PF08753.6 gi|110668159|ref|YP_657970.1| - 3.6e-19 68.4 1.8 5.2e-19 67.9 1.3 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|110668159|ref|YP_657970.1| - 4.4e-06 26.3 0.0 7.6e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Arc PF03869.9 gi|110668159|ref|YP_657970.1| - 0.13 11.9 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Arc-like DNA binding domain UPF0104 PF03706.8 gi|110668160|ref|YP_657971.1| - 1.6e-30 106.4 42.0 2.1e-30 106.0 29.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) AIM24 PF01987.12 gi|110668161|ref|YP_657972.1| - 9e-57 191.9 0.8 1e-56 191.8 0.6 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 HxlR PF01638.12 gi|110668163|ref|YP_657974.1| - 3e-24 84.4 0.0 3.6e-24 84.1 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.17 gi|110668163|ref|YP_657974.1| - 0.051 13.2 0.0 0.079 12.6 0.0 1.3 1 0 0 1 1 1 0 MarR family Isochorismatase PF00857.15 gi|110668164|ref|YP_657975.1| - 4.7e-34 117.8 0.1 6e-34 117.4 0.1 1.1 1 0 0 1 1 1 1 Isochorismatase family Pentapeptide PF00805.17 gi|110668166|ref|YP_657977.1| - 1.7e-51 170.7 44.8 6.4e-15 54.0 3.6 4.2 1 1 4 5 5 5 5 Pentapeptide repeats (8 copies) Pentapeptide_3 PF13576.1 gi|110668166|ref|YP_657977.1| - 1e-19 70.1 0.0 3.5e-06 26.8 0.0 3.9 1 1 3 4 4 4 4 Pentapeptide repeats (9 copies) Pentapeptide_4 PF13599.1 gi|110668166|ref|YP_657977.1| - 4.2e-18 64.9 0.0 2.3e-10 40.1 0.0 2.2 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) DUF4193 PF13834.1 gi|110668166|ref|YP_657977.1| - 0.012 15.8 1.0 21 5.3 0.0 4.4 1 1 3 4 4 4 0 Domain of unknown function (DUF4193) Methyltransf_12 PF08242.7 gi|110668166|ref|YP_657977.1| - 0.019 15.4 0.5 3.5 8.1 0.0 2.4 1 1 1 2 2 2 0 Methyltransferase domain SIC PF03482.8 gi|110668166|ref|YP_657977.1| - 0.021 14.4 1.0 3.6 7.1 0.1 2.3 1 1 1 2 2 2 0 sic protein Ldl_recept_b PF00058.12 gi|110668166|ref|YP_657977.1| - 0.34 11.2 2.7 8.2 6.8 0.1 3.3 2 1 2 4 4 4 0 Low-density lipoprotein receptor repeat class B DUF2681 PF10883.3 gi|110668167|ref|YP_657978.1| - 0.11 12.6 0.2 0.22 11.7 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2681) DUF202 PF02656.10 gi|110668167|ref|YP_657978.1| - 1.6 9.0 4.7 4.1 7.6 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF202) Multi_Drug_Res PF00893.14 gi|110668168|ref|YP_657979.1| - 2.7e-26 91.8 5.7 3.4e-26 91.5 4.0 1.2 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.15 gi|110668168|ref|YP_657979.1| - 0.43 10.6 8.7 0.63 10.0 6.0 1.4 1 1 0 1 1 1 0 EamA-like transporter family EmrE PF13536.1 gi|110668168|ref|YP_657979.1| - 3.2 7.9 10.1 12 6.1 7.0 1.8 1 1 0 1 1 1 0 Multidrug resistance efflux transporter PsbN PF02468.10 gi|110668168|ref|YP_657979.1| - 7.3 6.2 7.0 38 3.9 0.0 2.9 2 1 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) MFS_1 PF07690.11 gi|110668169|ref|YP_657980.1| - 2.5e-25 88.9 63.2 1.3e-19 70.1 22.2 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Mrr_cat PF04471.7 gi|110668170|ref|YP_657981.1| - 2e-27 95.2 0.0 4e-27 94.2 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease zf-ribbon_3 PF13248.1 gi|110668170|ref|YP_657981.1| - 0.0018 17.3 2.2 0.0045 16.1 1.5 1.6 1 0 0 1 1 1 1 zinc-ribbon domain Siva PF05458.7 gi|110668170|ref|YP_657981.1| - 0.086 12.4 1.2 0.13 11.8 0.8 1.3 1 0 0 1 1 1 0 Cd27 binding protein (Siva) Zn_Tnp_IS1595 PF12760.2 gi|110668170|ref|YP_657981.1| - 0.17 11.6 0.2 0.17 11.6 0.2 3.1 1 1 2 3 3 3 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|110668170|ref|YP_657981.1| - 0.25 10.9 2.7 0.66 9.5 1.9 1.7 1 0 0 1 1 1 0 zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|110668170|ref|YP_657981.1| - 0.31 10.8 5.3 0.13 12.0 2.0 1.7 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DZR PF12773.2 gi|110668170|ref|YP_657981.1| - 0.5 10.2 8.0 2.1 8.2 5.6 1.9 1 1 0 1 1 1 0 Double zinc ribbon zf-RING_5 PF14634.1 gi|110668170|ref|YP_657981.1| - 7.9 6.3 10.7 12 5.6 5.5 2.3 2 0 0 2 2 2 0 zinc-RING finger domain AA_permease_2 PF13520.1 gi|110668171|ref|YP_657982.1| - 3.3e-47 160.9 44.6 4e-47 160.7 30.9 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|110668171|ref|YP_657982.1| - 2.5e-40 138.2 44.1 3.1e-40 137.9 30.6 1.0 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.8 gi|110668171|ref|YP_657982.1| - 7.8e-08 31.3 13.6 7.8e-08 31.3 9.4 3.2 3 1 0 3 3 3 2 Spore germination protein AA_permease_C PF13906.1 gi|110668171|ref|YP_657982.1| - 0.02 14.7 1.5 0.02 14.7 1.0 2.9 2 0 0 2 2 2 0 C-terminus of AA_permease Usp PF00582.21 gi|110668172|ref|YP_657983.1| - 0.00074 19.7 1.0 1.6 8.9 0.0 2.8 1 1 1 2 2 2 2 Universal stress protein family Usp PF00582.21 gi|110668173|ref|YP_657984.1| - 1.8e-12 47.6 3.0 8.9e-11 42.1 0.3 2.3 2 1 0 2 2 2 2 Universal stress protein family Acetyltransf_10 PF13673.1 gi|110668173|ref|YP_657984.1| - 0.02 15.0 0.0 0.042 13.9 0.0 1.6 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain Meth_synt_2 PF01717.13 gi|110668174|ref|YP_657985.1| - 2.1e-153 510.0 0.0 8.6e-142 471.8 0.0 2.3 2 0 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|110668174|ref|YP_657985.1| - 9e-136 452.1 0.0 3.5e-120 400.9 0.0 3.1 3 0 0 3 3 3 3 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|110668174|ref|YP_657985.1| - 0.0038 16.1 0.2 0.57 9.0 0.0 2.6 3 0 0 3 3 3 2 Uroporphyrinogen decarboxylase (URO-D) OCD_Mu_crystall PF02423.10 gi|110668175|ref|YP_657986.1| - 2e-55 187.7 7.2 2.4e-55 187.5 5.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|110668175|ref|YP_657986.1| - 0.0038 17.3 0.0 0.016 15.3 0.0 2.0 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Zip PF02535.17 gi|110668176|ref|YP_657987.1| - 3.4e-21 75.5 16.5 1.3e-19 70.4 11.5 2.4 1 1 0 1 1 1 1 ZIP Zinc transporter Hydantoinase_B PF02538.9 gi|110668178|ref|YP_657989.1| - 8.8e-162 538.9 0.0 1.1e-161 538.6 0.0 1.1 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.13 gi|110668179|ref|YP_657990.1| - 2.2e-97 325.6 8.6 2.2e-95 319.0 1.5 2.3 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|110668179|ref|YP_657990.1| - 5.6e-54 182.3 5.3 1.1e-53 181.3 0.8 2.5 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.15 gi|110668179|ref|YP_657990.1| - 0.016 14.4 0.3 0.63 9.2 0.1 2.2 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family MutL PF13941.1 gi|110668179|ref|YP_657990.1| - 0.16 10.2 9.7 0.05 11.9 0.4 2.7 3 0 0 3 3 3 0 MutL protein FtsA PF14450.1 gi|110668179|ref|YP_657990.1| - 0.41 10.4 7.9 2.2 8.1 0.4 2.9 3 0 0 3 3 3 0 Cell division protein FtsA DUF3505 PF12013.3 gi|110668180|ref|YP_657991.1| - 0.051 13.8 0.1 0.063 13.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3505) HNH PF01844.18 gi|110668180|ref|YP_657991.1| - 0.12 12.2 1.5 0.24 11.3 1.0 1.6 1 1 0 1 1 1 0 HNH endonuclease ABC_tran PF00005.22 gi|110668181|ref|YP_657992.1| - 6.3e-35 120.4 0.0 9.3e-35 119.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|110668181|ref|YP_657992.1| - 1.4e-10 41.0 1.1 6.5e-10 38.8 0.1 2.4 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|110668181|ref|YP_657992.1| - 7.7e-07 29.3 0.0 0.0016 18.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain TOBE PF03459.12 gi|110668181|ref|YP_657992.1| - 0.0069 16.4 0.0 0.044 13.8 0.0 2.3 2 0 0 2 2 2 1 TOBE domain AAA PF00004.24 gi|110668181|ref|YP_657992.1| - 0.0087 16.2 1.2 0.044 13.9 0.8 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|110668181|ref|YP_657992.1| - 0.014 15.5 1.7 0.097 12.8 1.2 2.1 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|110668181|ref|YP_657992.1| - 0.015 13.9 0.1 0.03 12.9 0.0 1.3 1 1 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_16 PF13191.1 gi|110668181|ref|YP_657992.1| - 0.024 14.6 0.6 0.044 13.7 0.3 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.1 gi|110668181|ref|YP_657992.1| - 0.026 13.9 0.0 0.13 11.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|110668181|ref|YP_657992.1| - 0.051 13.5 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|110668181|ref|YP_657992.1| - 0.062 12.4 0.0 0.095 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|110668181|ref|YP_657992.1| - 0.066 14.0 0.2 0.14 12.9 0.1 1.6 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|110668181|ref|YP_657992.1| - 0.071 12.3 0.1 2.3 7.3 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain PRK PF00485.13 gi|110668181|ref|YP_657992.1| - 0.1 12.1 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.1 gi|110668181|ref|YP_657992.1| - 0.14 11.9 0.4 0.27 11.1 0.3 1.7 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|110668182|ref|YP_657993.1| - 4.1e-09 36.2 13.9 4.1e-09 36.2 9.6 2.6 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|110668183|ref|YP_657994.1| - 1.9e-11 43.8 21.1 1.9e-11 43.8 14.6 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_6 PF13343.1 gi|110668184|ref|YP_657995.1| - 2.5e-19 69.5 0.1 4.2e-19 68.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|110668184|ref|YP_657995.1| - 8.7e-18 65.0 1.7 1.1e-17 64.6 1.0 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|110668184|ref|YP_657995.1| - 1.8e-10 41.0 4.5 2.6e-10 40.5 2.7 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|110668184|ref|YP_657995.1| - 7.3e-08 32.3 0.1 1.3e-07 31.4 0.1 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Como_LCP PF02247.11 gi|110668184|ref|YP_657995.1| - 0.089 11.1 0.0 0.14 10.4 0.0 1.2 1 0 0 1 1 1 0 Large coat protein MOSC PF03473.12 gi|110668185|ref|YP_657996.1| - 4.3e-15 55.3 0.0 7.3e-15 54.6 0.0 1.4 1 0 0 1 1 1 1 MOSC domain MOSC_N PF03476.11 gi|110668185|ref|YP_657996.1| - 2.5e-12 46.5 0.0 6.1e-12 45.3 0.0 1.7 1 1 0 1 1 1 1 MOSC N-terminal beta barrel domain Spore_YtfJ PF09579.5 gi|110668187|ref|YP_657998.1| - 0.095 12.5 2.8 0.13 12.0 1.9 1.2 1 0 0 1 1 1 0 Sporulation protein YtfJ (Spore_YtfJ) E1-E2_ATPase PF00122.15 gi|110668188|ref|YP_657999.1| - 7.5e-58 195.2 0.9 1.8e-57 194.0 0.6 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|110668188|ref|YP_657999.1| - 1.1e-44 153.4 2.8 1.9e-44 152.6 2.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|110668188|ref|YP_657999.1| - 2.7e-23 81.8 6.3 1.9e-11 43.8 0.0 3.9 5 1 0 5 5 5 2 Heavy-metal-associated domain HAD PF12710.2 gi|110668188|ref|YP_657999.1| - 4.7e-18 66.0 0.0 1.2e-17 64.7 0.0 1.8 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HipA_N PF07805.7 gi|110668188|ref|YP_657999.1| - 0.039 14.1 0.0 0.11 12.7 0.0 1.7 1 0 0 1 1 1 0 HipA-like N-terminal domain Pox_A14 PF05767.7 gi|110668188|ref|YP_657999.1| - 0.072 13.0 0.3 0.28 11.1 0.2 2.0 1 0 0 1 1 1 0 Poxvirus virion envelope protein A14 Polysacc_deac_1 PF01522.16 gi|110668188|ref|YP_657999.1| - 0.084 12.4 0.2 3.7 7.2 0.0 2.6 2 0 0 2 2 2 0 Polysaccharide deacetylase Hydrolase_3 PF08282.7 gi|110668188|ref|YP_657999.1| - 0.1 12.1 6.1 0.12 11.9 0.3 2.8 3 0 0 3 3 3 0 haloacid dehalogenase-like hydrolase zf-LITAF-like PF10601.4 gi|110668188|ref|YP_657999.1| - 5.6 6.9 9.0 1.4 8.8 0.1 3.2 3 0 0 3 3 3 0 LITAF-like zinc ribbon domain DUF192 PF02643.10 gi|110668189|ref|YP_658000.1| - 0.052 13.2 0.0 0.067 12.8 0.0 1.3 1 1 0 1 1 1 0 Uncharacterized ACR, COG1430 CppA_N PF14506.1 gi|110668189|ref|YP_658000.1| - 0.091 12.4 0.0 0.69 9.6 0.0 1.9 1 1 1 2 2 2 0 CppA N-terminal DUF4385 PF14328.1 gi|110668190|ref|YP_658001.1| - 2.4e-57 192.9 4.7 2.9e-57 192.6 3.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4385) Transglut_core PF01841.14 gi|110668191|ref|YP_658002.1| - 1.2e-27 96.3 0.1 3.6e-27 94.7 0.0 1.9 2 0 0 2 2 2 1 Transglutaminase-like superfamily DUF4129 PF13559.1 gi|110668191|ref|YP_658002.1| - 1.2e-07 31.5 0.1 4.2e-07 29.8 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) DUF3488 PF11992.3 gi|110668191|ref|YP_658002.1| - 3.1e-06 26.0 3.0 6.5e-06 25.0 2.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3488) Transglut_core3 PF13471.1 gi|110668191|ref|YP_658002.1| - 0.0029 17.3 0.0 0.008 15.9 0.0 1.7 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4480 PF13715.1 gi|110668191|ref|YP_658002.1| - 0.0064 16.5 8.2 1.2 9.2 0.3 3.8 3 0 0 3 3 3 2 Domain of unknown function (DUF4480) DUF58 PF01882.13 gi|110668193|ref|YP_658004.1| - 1e-15 57.6 0.0 2.4e-15 56.4 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|110668193|ref|YP_658004.1| - 4e-06 26.7 0.5 4e-06 26.7 0.4 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|110668193|ref|YP_658004.1| - 0.0002 20.5 0.0 0.00033 19.8 0.0 1.3 1 0 0 1 1 1 1 Translocon-associated protein beta (TRAPB) NPCBM_assoc PF10633.4 gi|110668193|ref|YP_658004.1| - 0.0023 17.9 0.2 0.011 15.7 0.1 2.2 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|110668193|ref|YP_658004.1| - 0.0046 16.9 0.2 0.052 13.6 0.0 2.4 1 1 2 3 3 3 1 CARDB LPAM_2 PF13627.1 gi|110668193|ref|YP_658004.1| - 0.89 9.3 3.8 2.3 8.0 2.7 1.7 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site AAA_3 PF07726.6 gi|110668195|ref|YP_658006.1| - 2.7e-65 217.8 0.1 4.4e-65 217.2 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|110668195|ref|YP_658006.1| - 4.8e-14 52.2 0.0 1.2e-13 50.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|110668195|ref|YP_658006.1| - 6.3e-07 28.5 0.0 0.00014 20.7 0.0 2.1 2 0 0 2 2 2 2 MCM2/3/5 family AAA PF00004.24 gi|110668195|ref|YP_658006.1| - 4.1e-05 23.8 0.0 0.00016 21.8 0.0 2.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|110668195|ref|YP_658006.1| - 6.6e-05 22.4 0.0 0.00023 20.6 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|110668195|ref|YP_658006.1| - 0.027 13.5 0.1 0.34 9.9 0.1 2.5 1 1 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|110668195|ref|YP_658006.1| - 0.05 13.3 0.1 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain ODV-E18 PF10717.4 gi|110668196|ref|YP_658007.1| - 0.3 10.5 1.2 0.48 9.8 0.2 1.7 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 DUF3225 PF11533.3 gi|110668197|ref|YP_658008.1| - 0.011 15.3 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3225) SnoaL_3 PF13474.1 gi|110668197|ref|YP_658008.1| - 0.03 14.3 0.3 0.038 14.0 0.2 1.1 1 0 0 1 1 1 0 SnoaL-like domain bPH_2 PF03703.9 gi|110668198|ref|YP_658009.1| - 1.4e-12 47.4 0.6 1.4e-12 47.4 0.4 1.8 3 0 0 3 3 3 1 Bacterial PH domain bPH_2 PF03703.9 gi|110668199|ref|YP_658010.1| - 2.3e-17 62.7 0.0 3.9e-17 62.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial PH domain HTH_45 PF14947.1 gi|110668200|ref|YP_658011.1| - 9.4e-06 25.3 0.0 2e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|110668200|ref|YP_658011.1| - 0.00065 19.9 0.0 0.0046 17.2 0.0 2.3 2 1 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|110668200|ref|YP_658011.1| - 0.013 15.1 0.0 0.024 14.3 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Mrr_N PF14338.1 gi|110668200|ref|YP_658011.1| - 0.11 12.6 0.0 0.43 10.7 0.0 2.2 2 1 0 2 2 2 0 Mrr N-terminal domain Pyridox_oxidase PF01243.15 gi|110668201|ref|YP_658012.1| - 2.8e-13 49.6 0.1 4.4e-13 49.0 0.1 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_oxidase_2 PF13883.1 gi|110668201|ref|YP_658012.1| - 0.031 14.0 0.1 0.04 13.6 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase DUF2255 PF10012.4 gi|110668201|ref|YP_658012.1| - 0.082 12.8 0.2 0.13 12.2 0.1 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2255) Trypsin_2 PF13365.1 gi|110668202|ref|YP_658013.1| - 0.12 12.3 0.1 0.16 11.9 0.1 1.2 1 0 0 1 1 1 0 Trypsin-like peptidase domain Acetyltransf_1 PF00583.19 gi|110668203|ref|YP_658014.1| - 1.2e-06 28.4 0.0 1.8e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|110668203|ref|YP_658014.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF21 PF01595.15 gi|110668204|ref|YP_658015.1| - 1.2e-26 93.1 0.5 1.7e-26 92.6 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF21 CBS PF00571.23 gi|110668204|ref|YP_658015.1| - 1.9e-10 40.3 0.0 5.7e-07 29.2 0.1 2.4 2 0 0 2 2 2 2 CBS domain Sigma70_r3 PF04539.11 gi|110668204|ref|YP_658015.1| - 0.048 13.5 1.1 0.087 12.7 0.1 1.9 2 0 0 2 2 2 0 Sigma-70 region 3 Hydrolase_6 PF13344.1 gi|110668205|ref|YP_658016.1| - 2.4e-26 91.5 0.0 5.6e-26 90.3 0.0 1.6 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|110668205|ref|YP_658016.1| - 3.4e-20 71.5 0.0 9.4e-20 70.1 0.0 1.8 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|110668205|ref|YP_658016.1| - 4.9e-08 33.6 0.2 1e-06 29.3 0.1 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|110668205|ref|YP_658016.1| - 2.2e-07 31.2 0.0 0.0001 22.6 0.0 2.3 1 1 0 2 2 2 2 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|110668205|ref|YP_658016.1| - 0.083 13.0 0.0 0.25 11.4 0.0 1.8 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Rieske_2 PF13806.1 gi|110668206|ref|YP_658017.1| - 1e-14 54.0 0.0 2e-14 53.1 0.0 1.5 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Rieske PF00355.21 gi|110668206|ref|YP_658017.1| - 3.2e-13 49.0 0.0 6.1e-13 48.1 0.0 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain VWA_3 PF13768.1 gi|110668206|ref|YP_658017.1| - 0.095 12.3 0.1 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 von Willebrand factor type A domain MFS_2 PF13347.1 gi|110668207|ref|YP_658018.1| - 0.026 12.9 4.1 0.011 14.1 1.1 1.5 2 0 0 2 2 2 0 MFS/sugar transport protein DUF1129 PF06570.6 gi|110668207|ref|YP_658018.1| - 0.16 11.2 5.2 0.11 11.8 2.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) GIDE PF12483.3 gi|110668208|ref|YP_658019.1| - 0.00093 18.5 0.0 0.0018 17.6 0.0 1.4 1 0 0 1 1 1 1 E3 Ubiquitin ligase DUF3592 PF12158.3 gi|110668208|ref|YP_658019.1| - 0.018 14.8 0.0 0.084 12.6 0.0 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3592) Peptidase_S9 PF00326.16 gi|110668209|ref|YP_658020.1| - 1.8e-43 148.2 0.1 2.7e-43 147.6 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|110668209|ref|YP_658020.1| - 1.7e-11 44.0 0.0 6.9e-11 42.0 0.0 1.9 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|110668209|ref|YP_658020.1| - 3.2e-07 30.4 0.1 2.4e-06 27.5 0.0 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family PD40 PF07676.7 gi|110668209|ref|YP_658020.1| - 1.6e-06 27.6 1.6 0.069 12.8 0.0 5.3 5 0 0 5 5 5 1 WD40-like Beta Propeller Repeat Peptidase_S15 PF02129.13 gi|110668209|ref|YP_658020.1| - 1.3e-05 24.7 0.1 0.11 11.8 0.0 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Pectate_lyase22 PF14583.1 gi|110668209|ref|YP_658020.1| - 0.00013 20.5 0.2 0.0079 14.6 0.1 2.4 2 0 0 2 2 2 1 Oligogalacturonate lyase DPPIV_N PF00930.16 gi|110668209|ref|YP_658020.1| - 0.00019 20.1 0.1 0.47 8.9 0.0 2.9 1 1 0 2 2 2 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region Peptidase_S28 PF05577.7 gi|110668209|ref|YP_658020.1| - 0.00028 19.6 0.0 0.00049 18.7 0.0 1.3 1 0 0 1 1 1 1 Serine carboxypeptidase S28 Abhydrolase_1 PF00561.15 gi|110668209|ref|YP_658020.1| - 0.00065 19.3 0.2 0.69 9.4 0.0 2.3 1 1 1 2 2 2 2 alpha/beta hydrolase fold eIF2A PF08662.6 gi|110668209|ref|YP_658020.1| - 0.0044 16.7 0.0 3.5 7.2 0.0 2.3 1 1 1 2 2 2 2 Eukaryotic translation initiation factor eIF2A Esterase PF00756.15 gi|110668209|ref|YP_658020.1| - 0.03 13.7 0.0 0.091 12.1 0.0 1.9 2 0 0 2 2 2 0 Putative esterase Abhydrolase_2 PF02230.11 gi|110668209|ref|YP_658020.1| - 0.031 13.7 0.0 0.2 11.0 0.0 2.0 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase YqcI_YcgG PF08892.6 gi|110668212|ref|YP_658023.1| - 2.5e-77 259.3 0.0 2.9e-77 259.1 0.0 1.0 1 0 0 1 1 1 1 YqcI/YcgG family Isochorismatase PF00857.15 gi|110668213|ref|YP_658024.1| - 3e-33 115.1 0.0 3.5e-33 114.9 0.0 1.1 1 0 0 1 1 1 1 Isochorismatase family AIM24 PF01987.12 gi|110668214|ref|YP_658025.1| - 1.3e-39 135.8 0.1 1.5e-39 135.6 0.1 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Ribosomal_S8 PF00410.14 gi|110668215|ref|YP_658026.1| - 0.18 11.6 0.1 0.41 10.4 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein S8 TauE PF01925.14 gi|110668216|ref|YP_658027.1| - 1.8e-22 80.0 37.0 2e-22 79.8 25.7 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF2919 PF11143.3 gi|110668216|ref|YP_658027.1| - 0.42 10.4 5.9 1.8 8.4 0.1 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF2919) MFS_1 PF07690.11 gi|110668218|ref|YP_658029.1| - 5.9e-16 58.1 55.8 7e-11 41.4 21.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1424 PF07232.6 gi|110668218|ref|YP_658029.1| - 0.24 10.1 0.0 0.35 9.5 0.0 1.1 1 0 0 1 1 1 0 Putative rep protein (DUF1424) DUF3042 PF11240.3 gi|110668218|ref|YP_658029.1| - 3.4 7.5 7.4 2.2 8.1 0.1 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3042) Rubrerythrin PF02915.12 gi|110668219|ref|YP_658030.1| - 0.025 14.9 0.5 0.097 12.9 0.1 2.0 2 0 0 2 2 2 0 Rubrerythrin Amidohydro_2 PF04909.9 gi|110668219|ref|YP_658030.1| - 0.037 13.5 0.1 0.044 13.3 0.1 1.2 1 0 0 1 1 1 0 Amidohydrolase DUF892 PF05974.7 gi|110668219|ref|YP_658030.1| - 0.072 12.8 0.9 3 7.6 0.1 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF892) Lactamase_B PF00753.22 gi|110668220|ref|YP_658031.1| - 2.4e-19 69.7 4.9 3.6e-19 69.1 3.4 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|110668220|ref|YP_658031.1| - 1.3e-08 35.1 0.0 2.7e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.2 gi|110668220|ref|YP_658031.1| - 0.0021 17.6 0.1 0.021 14.3 0.1 2.2 2 1 0 2 2 2 1 Beta-lactamase superfamily domain Beta_helix PF13229.1 gi|110668221|ref|YP_658032.1| - 2.5e-17 63.0 4.0 5.6e-12 45.6 0.1 2.2 1 1 0 2 2 2 2 Right handed beta helix region NosD PF05048.8 gi|110668221|ref|YP_658032.1| - 2.1e-07 30.3 1.6 0.00025 20.3 0.2 3.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Pectate_lyase_3 PF12708.2 gi|110668221|ref|YP_658032.1| - 0.0098 16.0 1.0 0.13 12.3 0.7 2.1 1 1 0 1 1 1 1 Pectate lyase superfamily protein DUF1289 PF06945.8 gi|110668222|ref|YP_658033.1| - 1.1e-10 40.8 1.0 1.5e-09 37.1 0.2 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1289) Rad50_zn_hook PF04423.9 gi|110668222|ref|YP_658033.1| - 0.001 18.4 0.5 1.1 8.7 0.1 2.1 2 0 0 2 2 2 2 Rad50 zinc hook motif DUF2848 PF11010.3 gi|110668222|ref|YP_658033.1| - 0.043 13.2 0.0 0.066 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2848) CCDC-167 PF15188.1 gi|110668222|ref|YP_658033.1| - 0.067 13.1 0.3 0.11 12.4 0.2 1.4 1 1 0 1 1 1 0 Coiled-coil domain-containing protein 167 UBA PF00627.26 gi|110668222|ref|YP_658033.1| - 0.12 12.2 0.1 0.44 10.4 0.0 1.8 2 0 0 2 2 2 0 UBA/TS-N domain MFS_1 PF07690.11 gi|110668223|ref|YP_658034.1| - 4.1e-32 111.2 54.4 6.8e-18 64.4 18.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|110668223|ref|YP_658034.1| - 2.7e-07 29.3 23.9 1.9e-05 23.2 12.5 3.4 1 1 0 2 2 2 2 MFS/sugar transport protein Cupin_2 PF07883.6 gi|110668225|ref|YP_658036.1| - 2.1e-12 46.3 0.9 2.4e-12 46.1 0.6 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|110668225|ref|YP_658036.1| - 7.2e-05 22.4 0.1 9.7e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Auxin_BP PF02041.11 gi|110668225|ref|YP_658036.1| - 0.015 14.7 0.0 0.018 14.5 0.0 1.2 1 0 0 1 1 1 0 Auxin binding protein Ectoine_synth PF06339.7 gi|110668225|ref|YP_658036.1| - 0.037 13.9 0.0 0.042 13.7 0.0 1.2 1 0 0 1 1 1 0 Ectoine synthase Cupin_3 PF05899.7 gi|110668225|ref|YP_658036.1| - 0.078 12.3 0.0 0.12 11.8 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF861) ARD PF03079.9 gi|110668225|ref|YP_658036.1| - 0.19 11.7 0.5 0.33 10.9 0.4 1.6 1 1 0 1 1 1 0 ARD/ARD' family VWA_2 PF13519.1 gi|110668226|ref|YP_658037.1| - 1.7e-18 67.3 2.7 4.7e-18 65.8 1.9 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain Mg_chelatase PF01078.16 gi|110668226|ref|YP_658037.1| - 2e-12 46.6 0.0 3.7e-08 32.7 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|110668226|ref|YP_658037.1| - 2.5e-09 36.9 0.0 0.0002 21.1 0.0 3.3 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|110668226|ref|YP_658037.1| - 6e-06 25.2 0.1 5e-05 22.2 0.0 2.2 2 0 0 2 2 2 1 MCM2/3/5 family Sigma54_activat PF00158.21 gi|110668226|ref|YP_658037.1| - 0.0016 17.9 0.0 0.2 11.1 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_16 PF13191.1 gi|110668226|ref|YP_658037.1| - 0.0016 18.4 0.1 0.0085 16.0 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain VWA_3 PF13768.1 gi|110668226|ref|YP_658037.1| - 0.0022 17.6 0.3 0.0052 16.4 0.2 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_29 PF13555.1 gi|110668226|ref|YP_658037.1| - 0.1 12.1 0.0 0.32 10.5 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain CobN-Mg_chel PF02514.11 gi|110668227|ref|YP_658038.1| - 0 1194.8 0.0 0 1194.6 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.11 gi|110668227|ref|YP_658038.1| - 0.2 11.2 0.0 0.51 9.9 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain CbiC PF02570.10 gi|110668228|ref|YP_658039.1| - 1.4e-51 174.7 1.5 1.7e-51 174.4 1.0 1.1 1 0 0 1 1 1 1 Precorrin-8X methylmutase LKAAEAR PF15478.1 gi|110668228|ref|YP_658039.1| - 0.029 14.6 0.0 0.06 13.6 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function with LKAAEAR motif TP_methylase PF00590.15 gi|110668229|ref|YP_658040.1| - 4.6e-27 95.1 0.1 5.4e-27 94.8 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF3252 PF11623.3 gi|110668229|ref|YP_658040.1| - 0.025 13.9 0.1 0.049 13.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3252) Cob_adeno_trans PF01923.13 gi|110668230|ref|YP_658041.1| - 3.1e-58 196.1 0.0 3.5e-58 195.9 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase Tropomyosin_1 PF12718.2 gi|110668230|ref|YP_658041.1| - 0.042 13.7 0.0 0.058 13.2 0.0 1.2 1 0 0 1 1 1 0 Tropomyosin like Osmo_CC PF08946.5 gi|110668230|ref|YP_658041.1| - 0.3 11.1 2.9 18 5.4 0.0 2.6 2 0 0 2 2 2 0 Osmosensory transporter coiled coil ArgK PF03308.11 gi|110668231|ref|YP_658042.1| - 9.4e-90 300.0 13.1 9.9e-89 296.6 9.1 2.0 1 1 0 1 1 1 1 ArgK protein cobW PF02492.14 gi|110668231|ref|YP_658042.1| - 8.4e-09 35.1 1.4 8.2e-08 31.8 1.0 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|110668231|ref|YP_658042.1| - 5.6e-06 27.1 0.2 1.5e-05 25.8 0.0 1.9 2 1 0 2 2 1 1 AAA domain AAA_19 PF13245.1 gi|110668231|ref|YP_658042.1| - 9.9e-06 25.2 0.8 0.00017 21.2 0.1 2.6 2 0 0 2 2 2 1 Part of AAA domain SRP54 PF00448.17 gi|110668231|ref|YP_658042.1| - 3.5e-05 23.3 0.5 0.00012 21.5 0.3 1.9 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|110668231|ref|YP_658042.1| - 5.6e-05 23.2 0.1 0.00024 21.1 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|110668231|ref|YP_658042.1| - 0.00014 21.4 1.3 0.00033 20.2 0.8 1.7 1 1 0 1 1 1 1 AAA-like domain AAA_30 PF13604.1 gi|110668231|ref|YP_658042.1| - 0.00019 21.0 0.1 0.0005 19.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|110668231|ref|YP_658042.1| - 0.00032 20.4 0.1 0.00094 18.9 0.0 1.8 2 0 0 2 2 1 1 NTPase ATP_bind_1 PF03029.12 gi|110668231|ref|YP_658042.1| - 0.00033 20.2 0.0 0.0011 18.6 0.0 1.8 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein ABC_tran PF00005.22 gi|110668231|ref|YP_658042.1| - 0.00038 20.7 0.5 0.0012 19.1 0.0 2.0 2 0 0 2 2 2 1 ABC transporter MMR_HSR1 PF01926.18 gi|110668231|ref|YP_658042.1| - 0.00062 19.7 0.5 0.02 14.8 0.3 2.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|110668231|ref|YP_658042.1| - 0.00068 19.1 0.1 0.97 8.8 0.0 2.4 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_18 PF13238.1 gi|110668231|ref|YP_658042.1| - 0.00077 19.7 0.1 0.0022 18.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|110668231|ref|YP_658042.1| - 0.0013 17.9 0.5 0.0091 15.1 0.4 2.2 1 1 0 1 1 1 1 Protein of unknown function, DUF258 KAP_NTPase PF07693.9 gi|110668231|ref|YP_658042.1| - 0.0026 16.8 0.0 0.0054 15.7 0.0 1.5 1 0 0 1 1 1 1 KAP family P-loop domain AAA_22 PF13401.1 gi|110668231|ref|YP_658042.1| - 0.0031 17.6 0.0 0.011 15.9 0.0 1.9 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|110668231|ref|YP_658042.1| - 0.0034 16.8 0.6 0.0068 15.8 0.4 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_29 PF13555.1 gi|110668231|ref|YP_658042.1| - 0.0037 16.7 0.1 0.0094 15.4 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.7 gi|110668231|ref|YP_658042.1| - 0.0039 16.3 0.3 0.012 14.7 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin AAA_28 PF13521.1 gi|110668231|ref|YP_658042.1| - 0.0042 17.0 0.5 0.011 15.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain TrwB_AAD_bind PF10412.4 gi|110668231|ref|YP_658042.1| - 0.0089 14.6 0.1 0.022 13.4 0.0 1.6 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain NB-ARC PF00931.17 gi|110668231|ref|YP_658042.1| - 0.0091 14.8 0.0 0.017 14.0 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain KTI12 PF08433.5 gi|110668231|ref|YP_658042.1| - 0.011 14.9 0.1 0.06 12.5 0.0 2.0 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_33 PF13671.1 gi|110668231|ref|YP_658042.1| - 0.013 15.3 0.1 0.11 12.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain PRK PF00485.13 gi|110668231|ref|YP_658042.1| - 0.025 14.1 0.0 0.079 12.5 0.0 1.9 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family MobB PF03205.9 gi|110668231|ref|YP_658042.1| - 0.027 14.1 0.2 0.15 11.7 0.0 2.5 3 1 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|110668231|ref|YP_658042.1| - 0.035 13.7 0.0 0.13 11.9 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_25 PF13481.1 gi|110668231|ref|YP_658042.1| - 0.052 12.9 0.3 0.22 10.9 0.2 2.0 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|110668231|ref|YP_658042.1| - 0.065 13.0 1.1 0.35 10.6 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function DUF87 Miro PF08477.8 gi|110668231|ref|YP_658042.1| - 0.068 13.6 0.0 0.23 11.9 0.0 2.0 1 0 0 1 1 1 0 Miro-like protein AAA_5 PF07728.9 gi|110668231|ref|YP_658042.1| - 0.071 12.8 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Thymidylate_kin PF02223.12 gi|110668231|ref|YP_658042.1| - 0.11 11.8 0.1 1.1 8.6 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase AAA_14 PF13173.1 gi|110668231|ref|YP_658042.1| - 0.11 12.3 0.0 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain B12-binding PF02310.14 gi|110668232|ref|YP_658043.1| - 2.2e-19 69.4 0.8 2.6e-19 69.2 0.6 1.1 1 0 0 1 1 1 1 B12 binding domain Staph_haemo PF05480.6 gi|110668232|ref|YP_658043.1| - 0.056 13.1 0.0 0.14 11.8 0.0 1.7 1 0 0 1 1 1 0 Staphylococcus haemolytic protein Amidohydro_4 PF13147.1 gi|110668232|ref|YP_658043.1| - 0.063 13.2 0.4 0.07 13.1 0.3 1.1 1 0 0 1 1 1 0 Amidohydrolase BcrAD_BadFG PF01869.15 gi|110668232|ref|YP_658043.1| - 0.096 11.9 0.0 0.22 10.7 0.0 1.5 1 1 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family Peripla_BP_6 PF13458.1 gi|110668232|ref|YP_658043.1| - 0.1 11.9 0.0 0.18 11.1 0.0 1.4 1 1 0 1 1 1 0 Periplasmic binding protein 3HCDH_N PF02737.13 gi|110668233|ref|YP_658044.1| - 2.3e-57 193.5 0.3 2.8e-57 193.2 0.2 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|110668233|ref|YP_658044.1| - 1.6e-32 111.7 0.1 5.9e-32 109.9 0.0 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|110668233|ref|YP_658044.1| - 0.00034 20.4 1.6 0.00078 19.3 1.1 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|110668233|ref|YP_658044.1| - 0.0036 17.6 0.9 0.0094 16.3 0.6 1.9 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|110668233|ref|YP_658044.1| - 0.0083 15.8 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|110668233|ref|YP_658044.1| - 0.016 14.3 0.1 0.031 13.4 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short_C2 PF13561.1 gi|110668233|ref|YP_658044.1| - 0.026 14.2 0.2 0.04 13.6 0.1 1.2 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase UDPG_MGDP_dh_N PF03721.9 gi|110668233|ref|YP_658044.1| - 0.065 12.6 1.1 0.097 12.0 0.8 1.4 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.19 gi|110668233|ref|YP_658044.1| - 0.45 9.3 2.5 0.72 8.6 1.7 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase ABC_tran PF00005.22 gi|110668234|ref|YP_658045.1| - 5.9e-30 104.3 0.0 8.6e-30 103.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110668234|ref|YP_658045.1| - 3.5e-15 56.7 0.0 1.4e-10 41.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|110668234|ref|YP_658045.1| - 4e-08 32.7 0.0 1.8e-07 30.6 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|110668234|ref|YP_658045.1| - 6e-06 25.6 0.0 1.2e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|110668234|ref|YP_658045.1| - 3.7e-05 22.9 0.0 0.11 11.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|110668234|ref|YP_658045.1| - 0.00014 22.3 0.0 0.00017 21.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|110668234|ref|YP_658045.1| - 0.00026 19.5 0.0 0.017 13.6 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|110668234|ref|YP_658045.1| - 0.0016 18.4 0.1 0.0038 17.1 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|110668234|ref|YP_658045.1| - 0.0022 17.6 0.1 0.34 10.6 0.0 2.7 2 0 0 2 2 2 1 Part of AAA domain MukB PF04310.7 gi|110668234|ref|YP_658045.1| - 0.0029 16.9 0.0 0.0043 16.4 0.0 1.2 1 0 0 1 1 1 1 MukB N-terminal DUF258 PF03193.11 gi|110668234|ref|YP_658045.1| - 0.0031 16.7 0.0 0.0048 16.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|110668234|ref|YP_658045.1| - 0.0039 17.1 0.6 0.014 15.4 0.4 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|110668234|ref|YP_658045.1| - 0.012 16.4 0.1 0.031 15.0 0.1 1.9 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|110668234|ref|YP_658045.1| - 0.012 14.1 0.1 0.26 9.8 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Zeta_toxin PF06414.7 gi|110668234|ref|YP_658045.1| - 0.017 14.2 0.1 0.16 11.0 0.0 2.3 3 0 0 3 3 3 0 Zeta toxin AAA_30 PF13604.1 gi|110668234|ref|YP_658045.1| - 0.019 14.5 0.0 0.03 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|110668234|ref|YP_658045.1| - 0.03 13.7 0.4 0.084 12.2 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|110668234|ref|YP_658045.1| - 0.059 13.2 0.2 0.17 11.7 0.1 1.7 2 1 0 2 2 1 0 AAA domain NACHT PF05729.7 gi|110668234|ref|YP_658045.1| - 0.06 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain MobB PF03205.9 gi|110668234|ref|YP_658045.1| - 0.072 12.8 0.1 0.2 11.3 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.1 gi|110668234|ref|YP_658045.1| - 0.1 12.5 0.0 0.59 10.0 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Miro PF08477.8 gi|110668234|ref|YP_658045.1| - 0.1 13.0 0.0 0.18 12.3 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein AAA_5 PF07728.9 gi|110668234|ref|YP_658045.1| - 0.11 12.1 0.0 0.61 9.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NTPase_1 PF03266.10 gi|110668234|ref|YP_658045.1| - 0.11 12.1 0.0 0.43 10.2 0.0 1.8 2 0 0 2 2 2 0 NTPase cobW PF02492.14 gi|110668234|ref|YP_658045.1| - 0.12 11.8 0.1 0.24 10.8 0.1 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain HAD PF12710.2 gi|110668234|ref|YP_658045.1| - 0.14 12.2 0.0 0.19 11.8 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase CbiQ PF02361.11 gi|110668235|ref|YP_658046.1| - 3.3e-25 88.9 4.2 4.7e-25 88.4 2.9 1.1 1 0 0 1 1 1 1 Cobalt transport protein CcoS PF03597.10 gi|110668236|ref|YP_658047.1| - 8.8 5.8 6.1 2 7.9 0.0 2.6 3 0 0 3 3 3 0 Cytochrome oxidase maturation protein cbb3-type CbiM PF01891.11 gi|110668237|ref|YP_658048.1| - 1.1e-32 113.3 22.8 1.2e-32 113.1 15.8 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF3816 PF12822.2 gi|110668237|ref|YP_658048.1| - 0.00067 19.5 19.1 0.00067 19.5 13.3 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF3816) DUF1370 PF07114.6 gi|110668237|ref|YP_658048.1| - 2.6 7.2 7.1 0.68 9.1 0.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1370) Thiolase_N PF00108.18 gi|110668238|ref|YP_658049.1| - 6.4e-13 48.2 0.3 7.1e-11 41.5 0.0 2.2 2 0 0 2 2 2 2 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|110668238|ref|YP_658049.1| - 1e-10 41.5 6.7 8.6e-10 38.5 1.8 3.3 3 1 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.13 gi|110668238|ref|YP_658049.1| - 4.8e-10 38.9 0.1 2.7e-09 36.4 0.1 2.2 2 0 0 2 2 2 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.17 gi|110668238|ref|YP_658049.1| - 0.00055 19.7 0.3 1.3 8.8 0.0 3.4 3 0 0 3 3 3 2 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.5 gi|110668238|ref|YP_658049.1| - 0.025 14.2 1.5 0.78 9.4 0.2 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF35 PF01796.12 gi|110668239|ref|YP_658050.1| - 2.3e-09 37.3 1.8 3.1e-09 36.9 1.2 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|110668239|ref|YP_658050.1| - 0.00024 20.8 1.4 0.00038 20.2 0.3 1.8 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.2 gi|110668239|ref|YP_658050.1| - 0.03 14.1 0.1 0.049 13.4 0.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Nudix_N_2 PF14803.1 gi|110668239|ref|YP_658050.1| - 0.072 12.7 0.5 0.13 11.9 0.3 1.5 1 0 0 1 1 1 0 Nudix N-terminal TF_Zn_Ribbon PF08271.7 gi|110668239|ref|YP_658050.1| - 0.078 12.3 0.1 0.16 11.3 0.1 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|110668239|ref|YP_658050.1| - 0.14 11.3 0.4 0.26 10.5 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain adh_short PF00106.20 gi|110668240|ref|YP_658051.1| - 2.6e-43 147.8 0.3 3.2e-43 147.5 0.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|110668240|ref|YP_658051.1| - 1e-22 80.6 0.2 1.4e-22 80.2 0.1 1.1 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|110668240|ref|YP_658051.1| - 1.4e-18 67.5 0.6 1.7e-18 67.3 0.4 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|110668240|ref|YP_658051.1| - 3.2e-05 23.5 0.3 5.2e-05 22.7 0.2 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.14 gi|110668240|ref|YP_658051.1| - 0.0061 15.6 0.4 0.18 10.8 0.0 2.2 1 1 1 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 3Beta_HSD PF01073.14 gi|110668240|ref|YP_658051.1| - 0.0088 14.7 0.6 0.012 14.2 0.4 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|110668240|ref|YP_658051.1| - 0.016 15.2 1.2 0.022 14.7 0.9 1.4 1 1 0 1 1 1 0 NADH(P)-binding NmrA PF05368.8 gi|110668240|ref|YP_658051.1| - 0.072 12.3 1.7 0.071 12.3 0.4 1.6 2 1 0 2 2 2 0 NmrA-like family Abhydrolase_1 PF00561.15 gi|110668241|ref|YP_658052.1| - 4.3e-19 68.9 0.0 7e-19 68.3 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|110668241|ref|YP_658052.1| - 2.3e-11 44.0 0.0 5.2e-11 42.8 0.0 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family PhaC_N PF07167.8 gi|110668241|ref|YP_658052.1| - 9.8e-10 38.1 0.0 1.6e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Abhydrolase_5 PF12695.2 gi|110668241|ref|YP_658052.1| - 1.9e-09 37.4 0.0 2e-08 34.0 0.0 2.4 2 1 0 2 2 2 1 Alpha/beta hydrolase family HHH_5 PF14520.1 gi|110668241|ref|YP_658052.1| - 6.5e-07 29.4 0.2 2.9e-06 27.3 0.1 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain DLH PF01738.13 gi|110668241|ref|YP_658052.1| - 6.2e-05 22.3 0.0 0.0018 17.5 0.0 2.5 3 0 0 3 3 3 1 Dienelactone hydrolase family DUF3141 PF11339.3 gi|110668241|ref|YP_658052.1| - 9.9e-05 20.8 0.0 0.00038 18.9 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3141) DUF4332 PF14229.1 gi|110668241|ref|YP_658052.1| - 0.00017 21.5 0.0 0.00047 20.1 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) PHB_depo_C PF06850.6 gi|110668241|ref|YP_658052.1| - 0.0015 17.7 0.0 0.0033 16.6 0.0 1.5 1 0 0 1 1 1 1 PHB de-polymerase C-terminus DNA_pol_lambd_f PF10391.4 gi|110668241|ref|YP_658052.1| - 0.0083 15.6 0.0 0.017 14.6 0.0 1.5 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.3 gi|110668241|ref|YP_658052.1| - 0.0091 15.9 0.0 0.02 14.7 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus TfoX_C PF04994.8 gi|110668241|ref|YP_658052.1| - 0.019 14.8 0.0 0.037 13.9 0.0 1.4 1 0 0 1 1 1 0 TfoX C-terminal domain DUF2048 PF09752.4 gi|110668241|ref|YP_658052.1| - 0.028 13.2 0.2 1.9 7.2 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2048) FSH1 PF03959.8 gi|110668241|ref|YP_658052.1| - 0.05 13.0 0.0 0.22 10.9 0.0 1.9 2 0 0 2 2 2 0 Serine hydrolase (FSH1) PHA_synth_III_E PF09712.5 gi|110668242|ref|YP_658053.1| - 7.9e-10 38.6 1.2 7.9e-10 38.6 0.8 2.3 1 1 2 3 3 3 2 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) DUF89 PF01937.14 gi|110668242|ref|YP_658053.1| - 0.059 12.1 0.3 0.061 12.1 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF89 IMD PF08397.6 gi|110668242|ref|YP_658053.1| - 0.081 12.2 1.7 0.43 9.8 0.1 2.3 2 1 0 2 2 2 0 IRSp53/MIM homology domain Phasin PF05597.6 gi|110668242|ref|YP_658053.1| - 0.086 12.5 2.1 0.91 9.2 0.0 2.6 2 1 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) KCNQ_channel PF03520.9 gi|110668242|ref|YP_658053.1| - 0.11 11.8 0.6 0.22 10.8 0.2 1.7 2 1 0 2 2 2 0 KCNQ voltage-gated potassium channel FliD_C PF07195.7 gi|110668242|ref|YP_658053.1| - 0.15 11.2 3.3 0.54 9.5 2.3 1.8 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Phasin_2 PF09361.5 gi|110668242|ref|YP_658053.1| - 0.16 11.9 7.3 1.2 9.2 1.3 3.2 2 1 0 2 2 2 0 Phasin protein Perilipin PF03036.11 gi|110668243|ref|YP_658054.1| - 0.0028 16.5 0.7 0.013 14.3 0.1 1.9 1 1 1 2 2 2 1 Perilipin family Phasin_2 PF09361.5 gi|110668243|ref|YP_658054.1| - 0.006 16.5 5.3 0.26 11.3 0.1 2.9 1 1 0 2 2 2 2 Phasin protein DUF4226 PF10774.4 gi|110668243|ref|YP_658054.1| - 0.0082 16.1 1.6 0.03 14.3 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4226) Helicase_IV_N PF12462.3 gi|110668243|ref|YP_658054.1| - 0.039 13.6 0.5 0.1 12.2 0.0 1.8 2 0 0 2 2 2 0 DNA helicase IV / RNA helicase N terminal PMEI PF04043.10 gi|110668243|ref|YP_658054.1| - 0.042 13.7 0.5 0.083 12.7 0.4 1.6 1 1 0 1 1 1 0 Plant invertase/pectin methylesterase inhibitor Tape_meas_lam_C PF09718.5 gi|110668243|ref|YP_658054.1| - 0.075 12.9 6.1 3.4 7.6 0.0 3.1 2 1 2 4 4 4 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) DUF2365 PF10157.4 gi|110668243|ref|YP_658054.1| - 0.13 12.1 0.5 0.52 10.1 0.3 1.8 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2365) LXG PF04740.7 gi|110668243|ref|YP_658054.1| - 0.15 11.8 3.3 0.37 10.5 2.3 1.6 1 1 0 1 1 1 0 LXG domain of WXG superfamily KfrA_N PF11740.3 gi|110668243|ref|YP_658054.1| - 0.16 12.4 6.5 0.15 12.5 0.7 2.2 1 1 1 2 2 2 0 Plasmid replication region DNA-binding N-term DUF2508 PF10704.4 gi|110668243|ref|YP_658054.1| - 0.3 11.3 2.5 4.1 7.6 0.2 2.5 1 1 3 4 4 4 0 Protein of unknown function (DUF2508) WXG100 PF06013.7 gi|110668243|ref|YP_658054.1| - 0.42 10.6 5.7 0.54 10.2 0.9 2.4 2 1 0 2 2 2 0 Proteins of 100 residues with WXG YtxH PF12732.2 gi|110668243|ref|YP_658054.1| - 0.56 10.6 4.5 0.54 10.6 0.7 2.4 2 1 0 2 2 2 0 YtxH-like protein RepB-RCR_reg PF10723.4 gi|110668244|ref|YP_658055.1| - 0.056 13.1 0.0 0.085 12.5 0.0 1.2 1 0 0 1 1 1 0 Replication regulatory protein RepB Antitoxin-MazE PF04014.13 gi|110668244|ref|YP_658055.1| - 0.12 12.1 0.5 0.26 11.0 0.3 1.6 1 0 0 1 1 1 0 Antidote-toxin recognition MazE MaoC_dehydratas PF01575.14 gi|110668245|ref|YP_658056.1| - 2.1e-21 75.5 0.1 3.4e-21 74.9 0.1 1.3 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|110668245|ref|YP_658056.1| - 2.6e-07 30.4 0.2 2.3e-06 27.4 0.0 2.3 1 1 1 2 2 2 1 N-terminal half of MaoC dehydratase 4HBT PF03061.17 gi|110668245|ref|YP_658056.1| - 0.046 13.8 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 Thioesterase superfamily 4HBT_2 PF13279.1 gi|110668245|ref|YP_658056.1| - 0.068 13.6 0.0 0.25 11.7 0.0 1.7 1 1 1 2 2 2 0 Thioesterase-like superfamily AP_endonuc_2 PF01261.19 gi|110668246|ref|YP_658057.1| - 5.4e-17 61.7 0.1 7.8e-17 61.2 0.1 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel tRNA-synt_1 PF00133.17 gi|110668247|ref|YP_658058.1| - 1e-70 238.4 6.3 6.1e-27 93.8 0.0 4.9 1 1 3 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.1 gi|110668247|ref|YP_658058.1| - 8.3e-55 184.9 0.0 1.4e-54 184.1 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.6 gi|110668247|ref|YP_658058.1| - 4.3e-41 140.8 0.3 9.6e-26 90.3 0.1 4.1 3 1 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|110668247|ref|YP_658058.1| - 2.9e-15 56.3 0.0 5.8e-15 55.3 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|110668247|ref|YP_658058.1| - 4.8e-09 35.7 0.3 1.3e-05 24.5 0.0 3.0 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|110668247|ref|YP_658058.1| - 2.8e-05 22.9 0.0 0.0077 14.9 0.0 2.7 2 0 0 2 2 2 2 tRNA synthetases class I (K) DZR PF12773.2 gi|110668247|ref|YP_658058.1| - 0.00014 21.6 2.7 0.3 10.9 0.2 2.5 2 0 0 2 2 2 2 Double zinc ribbon tRNA-synt_1d PF00750.14 gi|110668247|ref|YP_658058.1| - 0.0058 15.4 0.0 1.3 7.7 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (R) DNA_ligase_ZBD PF03119.11 gi|110668247|ref|YP_658058.1| - 0.014 15.0 4.2 0.31 10.7 0.0 3.1 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain tRNA-synt_1b PF00579.20 gi|110668247|ref|YP_658058.1| - 0.035 13.2 0.1 0.12 11.4 0.0 1.8 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) DUF2570 PF10828.3 gi|110668247|ref|YP_658058.1| - 0.1 12.1 0.0 1.4 8.5 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2570) Nudix_N_2 PF14803.1 gi|110668247|ref|YP_658058.1| - 0.76 9.5 3.1 29 4.4 0.1 3.7 3 0 0 3 3 3 0 Nudix N-terminal TF_Zn_Ribbon PF08271.7 gi|110668247|ref|YP_658058.1| - 1.3 8.4 9.5 20 4.6 0.1 3.6 3 0 0 3 3 3 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|110668247|ref|YP_658058.1| - 1.5 8.8 3.6 2.9 7.9 0.1 2.9 3 0 0 3 3 3 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|110668247|ref|YP_658058.1| - 2.5 7.4 7.5 6.8 6.0 0.6 3.1 2 1 1 3 3 3 0 zinc-ribbon domain HTH_29 PF13551.1 gi|110668248|ref|YP_658059.1| - 5.9e-16 58.6 0.0 1.2e-15 57.5 0.0 1.5 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.1 gi|110668248|ref|YP_658059.1| - 4.9e-09 35.5 0.0 9.2e-08 31.5 0.0 2.3 2 0 0 2 2 2 1 Homeodomain-like domain HTH_32 PF13565.1 gi|110668248|ref|YP_658059.1| - 9.7e-09 35.9 0.3 1.1e-07 32.5 0.0 2.4 3 0 0 3 3 3 1 Homeodomain-like domain HTH_33 PF13592.1 gi|110668248|ref|YP_658059.1| - 2.1e-08 33.5 0.1 2.1e-07 30.3 0.0 2.6 4 0 0 4 4 4 1 Winged helix-turn helix HTH_28 PF13518.1 gi|110668248|ref|YP_658059.1| - 2.6e-07 30.4 0.0 1.3e-06 28.2 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Terminase_5 PF06056.7 gi|110668248|ref|YP_658059.1| - 0.0002 20.8 0.0 0.00048 19.6 0.0 1.6 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) chaperone_DMP PF10448.4 gi|110668249|ref|YP_658060.1| - 0.053 13.4 0.9 0.071 13.0 0.6 1.2 1 0 0 1 1 1 0 20S proteasome chaperone PMSR PF01625.16 gi|110668250|ref|YP_658061.1| - 6.6e-39 133.2 0.0 8.8e-39 132.8 0.0 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase FAD_binding_4 PF01565.18 gi|110668251|ref|YP_658062.1| - 1.4e-31 108.8 2.8 2.4e-31 108.0 2.0 1.4 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.7 gi|110668251|ref|YP_658062.1| - 2.4e-09 36.9 0.0 4.9e-09 35.9 0.0 1.6 1 0 0 1 1 1 1 Berberine and berberine like Cytokin-bind PF09265.5 gi|110668251|ref|YP_658062.1| - 0.026 13.6 0.3 0.071 12.2 0.2 1.7 1 1 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding Lactamase_B_2 PF12706.2 gi|110668252|ref|YP_658063.1| - 1e-05 25.2 3.6 0.0026 17.3 1.1 3.1 2 1 0 2 2 2 2 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|110668252|ref|YP_658063.1| - 0.00014 21.6 0.0 0.00033 20.3 0.0 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase DNA_ligase_A_N PF04675.9 gi|110668253|ref|YP_658064.1| - 1.6e-42 145.3 0.0 4.1e-42 143.9 0.0 1.7 1 1 1 2 2 2 1 DNA ligase N terminus DNA_ligase_A_M PF01068.16 gi|110668253|ref|YP_658064.1| - 2.7e-40 137.9 0.0 1e-39 135.9 0.0 1.9 1 1 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_C PF04679.10 gi|110668253|ref|YP_658064.1| - 1.1e-13 51.4 0.0 1.4e-12 47.8 0.0 2.5 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region mRNA_cap_enzyme PF01331.14 gi|110668253|ref|YP_658064.1| - 0.056 13.1 0.0 0.14 11.7 0.0 1.7 2 0 0 2 2 2 0 mRNA capping enzyme, catalytic domain Rhomboid PF01694.17 gi|110668255|ref|YP_658066.1| - 1.6e-21 76.8 12.9 2.4e-21 76.2 8.9 1.2 1 0 0 1 1 1 1 Rhomboid family DUF1751 PF08551.5 gi|110668255|ref|YP_658066.1| - 2.1e-05 24.7 0.4 2.1e-05 24.7 0.3 1.9 2 0 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) DUF3040 PF11239.3 gi|110668256|ref|YP_658067.1| - 0.015 15.3 0.0 0.022 14.8 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) Methyltransf_11 PF08241.7 gi|110668258|ref|YP_658069.1| - 1.5e-11 44.6 0.0 2.7e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|110668258|ref|YP_658069.1| - 3.9e-11 42.8 0.0 5.7e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|110668258|ref|YP_658069.1| - 4.2e-11 42.6 0.0 4.8e-11 42.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|110668258|ref|YP_658069.1| - 1.2e-08 35.3 0.0 2.7e-08 34.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|110668258|ref|YP_658069.1| - 3.8e-08 33.9 0.0 7.9e-08 32.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|110668258|ref|YP_658069.1| - 1.4e-07 31.8 0.0 2.4e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|110668258|ref|YP_658069.1| - 1.1e-06 28.4 0.0 2.7e-06 27.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|110668258|ref|YP_658069.1| - 1e-05 25.5 0.5 2.2e-05 24.4 0.4 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|110668258|ref|YP_658069.1| - 3.1e-05 23.1 0.0 4.9e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Ubie_methyltran PF01209.13 gi|110668258|ref|YP_658069.1| - 0.00015 20.9 0.0 0.00023 20.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|110668258|ref|YP_658069.1| - 0.0008 18.5 0.0 0.0011 18.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase FtsJ PF01728.14 gi|110668258|ref|YP_658069.1| - 0.0048 16.9 0.1 0.0055 16.7 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase MTS PF05175.9 gi|110668258|ref|YP_658069.1| - 0.0049 16.2 0.0 0.0093 15.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain GCD14 PF08704.5 gi|110668258|ref|YP_658069.1| - 0.017 14.6 0.0 0.026 14.0 0.0 1.3 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Fibrillarin PF01269.12 gi|110668258|ref|YP_658069.1| - 0.067 12.1 0.0 0.095 11.6 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin Methyltransf_32 PF13679.1 gi|110668258|ref|YP_658069.1| - 0.083 12.5 0.0 0.17 11.6 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Na_Ca_ex PF01699.19 gi|110668260|ref|YP_658071.1| - 8.7e-38 129.0 32.4 2.6e-20 72.4 8.4 2.3 2 1 0 2 2 2 2 Sodium/calcium exchanger protein 2TM PF13239.1 gi|110668260|ref|YP_658071.1| - 0.13 12.3 0.1 0.13 12.3 0.1 2.6 3 1 0 3 3 3 0 2TM domain NAD_binding_10 PF13460.1 gi|110668261|ref|YP_658072.1| - 6.5e-23 81.6 0.0 1.1e-22 80.9 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|110668261|ref|YP_658072.1| - 1.7e-11 43.8 0.0 2.3e-11 43.4 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|110668261|ref|YP_658072.1| - 6.3e-10 38.8 0.0 9.1e-09 35.0 0.0 2.3 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|110668261|ref|YP_658072.1| - 3.7e-07 29.3 0.0 7.5e-05 21.7 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|110668261|ref|YP_658072.1| - 2.1e-05 23.3 0.0 3.8e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|110668261|ref|YP_658072.1| - 0.0014 17.6 0.2 0.015 14.2 0.0 2.4 3 0 0 3 3 3 1 Male sterility protein Semialdhyde_dh PF01118.19 gi|110668261|ref|YP_658072.1| - 0.0043 17.3 0.0 0.012 15.9 0.0 1.7 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|110668261|ref|YP_658072.1| - 0.0047 16.8 0.0 0.0089 15.9 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus adh_short PF00106.20 gi|110668261|ref|YP_658072.1| - 0.023 14.6 0.0 0.056 13.3 0.0 1.7 1 1 0 1 1 1 0 short chain dehydrogenase Fer2 PF00111.22 gi|110668262|ref|YP_658073.1| - 1.2e-07 31.3 3.2 2.4e-06 27.2 2.2 2.4 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Peptidase_C41 PF05417.6 gi|110668262|ref|YP_658073.1| - 0.12 11.8 0.3 0.17 11.4 0.2 1.2 1 0 0 1 1 1 0 Hepatitis E cysteine protease Fer2_3 PF13085.1 gi|110668262|ref|YP_658073.1| - 0.48 10.2 2.5 1.7 8.5 1.7 2.1 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain A2L_zn_ribbon PF08792.5 gi|110668263|ref|YP_658074.1| - 0.01 15.2 0.5 0.016 14.6 0.3 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain DUF2318 PF10080.4 gi|110668263|ref|YP_658074.1| - 0.024 14.3 0.2 0.027 14.2 0.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Prok-RING_1 PF14446.1 gi|110668263|ref|YP_658074.1| - 0.034 13.8 1.1 0.047 13.4 0.8 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 RNA_POL_M_15KD PF02150.11 gi|110668263|ref|YP_658074.1| - 0.045 13.4 1.8 2.8 7.7 0.1 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit GCC2_GCC3 PF07699.8 gi|110668263|ref|YP_658074.1| - 0.23 11.0 1.9 0.32 10.6 1.3 1.2 1 0 0 1 1 1 0 GCC2 and GCC3 FUN14 PF04930.10 gi|110668264|ref|YP_658075.1| - 9e-20 70.8 1.6 1e-19 70.6 1.1 1.0 1 0 0 1 1 1 1 FUN14 family DUF4646 PF15496.1 gi|110668264|ref|YP_658075.1| - 0.087 12.8 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4646) ATPase_gene1 PF09527.5 gi|110668264|ref|YP_658075.1| - 0.69 9.7 9.1 0.49 10.2 2.4 2.6 2 1 0 2 2 2 0 Putative F0F1-ATPase subunit (ATPase_gene1) MMR_HSR1 PF01926.18 gi|110668265|ref|YP_658076.1| - 1.8e-18 66.5 0.0 5.5e-18 65.0 0.0 1.9 2 0 0 2 2 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|110668265|ref|YP_658076.1| - 2.7e-11 43.2 0.0 7.3e-11 41.8 0.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP-bdg_N PF13167.1 gi|110668265|ref|YP_658076.1| - 4.1e-11 42.8 0.0 1.2e-10 41.3 0.0 1.8 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal cobW PF02492.14 gi|110668265|ref|YP_658076.1| - 3.1e-06 26.7 0.2 0.0005 19.5 0.0 2.6 1 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.13 gi|110668265|ref|YP_658076.1| - 0.00027 20.2 0.0 0.25 10.5 0.0 2.9 3 0 0 3 3 3 2 Ferrous iron transport protein B AAA_18 PF13238.1 gi|110668265|ref|YP_658076.1| - 0.00077 19.7 0.0 0.0091 16.2 0.0 2.7 2 0 0 2 2 2 1 AAA domain Miro PF08477.8 gi|110668265|ref|YP_658076.1| - 0.0038 17.7 0.0 0.018 15.5 0.0 2.2 1 1 0 1 1 1 1 Miro-like protein AAA_17 PF13207.1 gi|110668265|ref|YP_658076.1| - 0.0039 17.9 1.6 0.034 14.9 0.1 2.9 2 2 1 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|110668265|ref|YP_658076.1| - 0.0064 16.6 0.1 0.035 14.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|110668265|ref|YP_658076.1| - 0.023 14.3 0.0 0.07 12.8 0.0 2.0 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Nif11 PF07862.6 gi|110668265|ref|YP_658076.1| - 0.027 14.3 0.5 0.089 12.7 0.0 2.2 2 0 0 2 2 2 0 Nitrogen fixation protein of unknown function Arf PF00025.16 gi|110668265|ref|YP_658076.1| - 0.05 12.8 0.1 3.8 6.6 0.0 2.5 2 0 0 2 2 2 0 ADP-ribosylation factor family AAA_14 PF13173.1 gi|110668265|ref|YP_658076.1| - 0.067 13.0 0.0 0.35 10.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.18 gi|110668265|ref|YP_658076.1| - 0.29 10.9 6.5 2.6 7.8 0.0 3.3 3 1 1 4 4 4 0 Dynamin family Neur_chan_memb PF02932.11 gi|110668265|ref|YP_658076.1| - 4.7 7.0 6.1 20 4.9 4.6 1.6 2 0 0 2 2 2 0 Neurotransmitter-gated ion-channel transmembrane region MoaC PF01967.16 gi|110668266|ref|YP_658077.1| - 2.2e-43 147.1 2.2 2.7e-43 146.9 1.5 1.1 1 0 0 1 1 1 1 MoaC family Carb_kinase PF01256.12 gi|110668267|ref|YP_658078.1| - 1.2e-48 165.4 1.9 2.3e-48 164.6 1.3 1.4 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|110668267|ref|YP_658078.1| - 1.8e-42 144.8 0.1 3.7e-42 143.7 0.1 1.6 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.10 gi|110668267|ref|YP_658078.1| - 0.0021 17.2 0.2 0.0037 16.4 0.1 1.4 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family MFS_1 PF07690.11 gi|110668268|ref|YP_658079.1| - 4.1e-31 107.9 48.8 4.1e-31 107.9 33.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily zf-FCS PF06467.9 gi|110668269|ref|YP_658080.1| - 2.5e-05 23.8 1.3 4.6e-05 22.9 0.9 1.4 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF3330 PF11809.3 gi|110668269|ref|YP_658080.1| - 0.0015 18.3 1.9 0.0019 18.0 1.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3330) DUF2116 PF09889.4 gi|110668269|ref|YP_658080.1| - 0.0073 16.0 2.6 0.098 12.4 0.2 2.1 2 0 0 2 2 2 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) Ecl1 PF12855.2 gi|110668269|ref|YP_658080.1| - 0.028 13.6 0.2 0.045 13.0 0.1 1.3 1 0 0 1 1 1 0 Life-span regulatory factor YHS PF04945.8 gi|110668269|ref|YP_658080.1| - 0.048 13.5 1.8 0.087 12.6 1.2 1.3 1 0 0 1 1 1 0 YHS domain NosL PF05573.7 gi|110668269|ref|YP_658080.1| - 0.07 12.8 0.1 0.075 12.7 0.1 1.0 1 0 0 1 1 1 0 NosL DUF329 PF03884.9 gi|110668269|ref|YP_658080.1| - 0.1 12.1 2.6 1.8 8.1 1.5 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF329) zf-C2H2_3 PF13878.1 gi|110668269|ref|YP_658080.1| - 0.93 9.1 5.1 5.8 6.5 0.1 2.4 2 1 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO NAD_binding_1 PF00175.16 gi|110668270|ref|YP_658081.1| - 6.5e-16 58.8 0.0 9.5e-16 58.3 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|110668270|ref|YP_658081.1| - 7.3e-06 26.0 0.0 1.1e-05 25.4 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain HTH_20 PF12840.2 gi|110668271|ref|YP_658082.1| - 4e-08 32.9 0.0 6e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|110668271|ref|YP_658082.1| - 0.00078 18.7 0.0 0.0015 17.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|110668271|ref|YP_658082.1| - 0.0026 17.4 0.0 0.024 14.3 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|110668271|ref|YP_658082.1| - 0.0047 16.5 0.0 0.0096 15.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|110668271|ref|YP_658082.1| - 0.009 15.5 0.0 0.015 14.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|110668271|ref|YP_658082.1| - 0.014 15.0 0.1 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 MarR family Usp PF00582.21 gi|110668272|ref|YP_658083.1| - 2.7e-38 131.2 2.2 3.1e-38 131.1 1.5 1.0 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.11 gi|110668272|ref|YP_658083.1| - 0.0042 17.6 0.1 0.0057 17.1 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase B12-binding PF02310.14 gi|110668272|ref|YP_658083.1| - 0.041 13.7 0.1 0.058 13.2 0.1 1.3 1 0 0 1 1 1 0 B12 binding domain Glu_synthase PF01645.12 gi|110668272|ref|YP_658083.1| - 0.071 12.0 0.2 0.087 11.7 0.1 1.1 1 0 0 1 1 1 0 Conserved region in glutamate synthase Imm1 PF14430.1 gi|110668272|ref|YP_658083.1| - 0.12 12.4 0.4 0.17 12.0 0.2 1.3 1 1 0 1 1 1 0 Immunity protein Imm1 ETF PF01012.16 gi|110668272|ref|YP_658083.1| - 0.18 11.5 5.9 2.3 7.9 4.1 2.5 1 1 0 1 1 1 0 Electron transfer flavoprotein domain RIO1 PF01163.17 gi|110668273|ref|YP_658084.1| - 2.5e-12 46.5 0.0 4.1e-12 45.8 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|110668273|ref|YP_658084.1| - 1.1e-09 37.6 0.0 1.9e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|110668273|ref|YP_658084.1| - 1.1e-05 25.2 0.4 0.00011 21.9 0.3 2.6 1 1 0 1 1 1 1 Phosphotransferase enzyme family Pkinase PF00069.20 gi|110668273|ref|YP_658084.1| - 0.00035 19.7 0.0 0.0005 19.2 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain APH_6_hur PF04655.9 gi|110668273|ref|YP_658084.1| - 0.042 13.0 0.0 0.059 12.5 0.0 1.3 1 0 0 1 1 1 0 Aminoglycoside/hydroxyurea antibiotic resistance kinase WaaY PF06176.6 gi|110668273|ref|YP_658084.1| - 0.06 12.5 0.0 0.081 12.1 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Polyketide_cyc2 PF10604.4 gi|110668275|ref|YP_658086.1| - 3.4e-14 53.1 0.5 3.9e-14 52.9 0.3 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.8 gi|110668275|ref|YP_658086.1| - 0.00084 19.0 0.0 0.002 17.8 0.0 1.5 1 1 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc PF03364.15 gi|110668275|ref|YP_658086.1| - 0.015 15.2 0.1 0.02 14.9 0.1 1.2 1 0 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport FaeA PF04703.7 gi|110668276|ref|YP_658087.1| - 0.0011 19.1 0.1 0.0012 18.8 0.1 1.2 1 0 0 1 1 1 1 FaeA-like protein HTH_AsnC-type PF13404.1 gi|110668276|ref|YP_658087.1| - 0.066 12.7 0.0 0.16 11.4 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|110668276|ref|YP_658087.1| - 0.098 12.0 0.1 0.36 10.2 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TrkA_N PF02254.13 gi|110668277|ref|YP_658088.1| - 3.2e-41 139.9 11.2 6e-22 77.8 1.6 2.8 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|110668277|ref|YP_658088.1| - 5.6e-28 96.3 1.6 3.6e-13 48.8 0.0 2.9 2 0 0 2 2 2 2 TrkA-C domain Ion_trans_2 PF07885.11 gi|110668277|ref|YP_658088.1| - 0.00086 18.9 5.6 0.0017 18.0 3.9 1.5 1 0 0 1 1 1 1 Ion channel NAD_binding_7 PF13241.1 gi|110668277|ref|YP_658088.1| - 0.0016 18.6 4.2 0.0065 16.7 0.2 3.5 2 1 2 4 4 4 1 Putative NAD(P)-binding AdoHcyase_NAD PF00670.16 gi|110668277|ref|YP_658088.1| - 0.0017 18.2 0.1 0.43 10.4 0.0 2.5 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ThiF PF00899.16 gi|110668277|ref|YP_658088.1| - 0.02 14.7 0.0 0.082 12.7 0.0 2.1 1 0 0 1 1 1 0 ThiF family 2-Hacid_dh_C PF02826.14 gi|110668277|ref|YP_658088.1| - 0.022 13.9 0.0 0.042 13.0 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EmrE PF13536.1 gi|110668277|ref|YP_658088.1| - 0.031 14.4 4.5 2.9 8.1 0.6 2.3 1 1 0 2 2 2 0 Multidrug resistance efflux transporter DUF3391 PF11871.3 gi|110668277|ref|YP_658088.1| - 0.047 13.9 0.2 0.99 9.6 0.0 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF3391) AlaDh_PNT_C PF01262.16 gi|110668277|ref|YP_658088.1| - 0.06 12.9 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain COX3 PF00510.13 gi|110668278|ref|YP_658089.1| - 3.3e-37 128.3 19.3 6.1e-37 127.4 13.4 1.3 1 0 0 1 1 1 1 Cytochrome c oxidase subunit III SQS_PSY PF00494.14 gi|110668279|ref|YP_658090.1| - 5e-44 150.5 0.6 6.1e-44 150.3 0.4 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase DUF1414 PF07208.6 gi|110668279|ref|YP_658090.1| - 0.039 13.6 0.0 0.12 12.1 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1414) CDP-OH_P_transf PF01066.16 gi|110668281|ref|YP_658092.1| - 5.5e-10 39.4 8.0 5.5e-10 39.4 5.5 2.4 3 0 0 3 3 3 1 CDP-alcohol phosphatidyltransferase Copper-bind PF00127.15 gi|110668282|ref|YP_658093.1| - 9.4e-18 64.2 0.0 1.5e-17 63.6 0.0 1.3 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|110668282|ref|YP_658093.1| - 0.00011 22.0 0.0 0.074 12.9 0.0 2.1 2 0 0 2 2 2 2 Cupredoxin-like domain TAT_signal PF10518.4 gi|110668282|ref|YP_658093.1| - 0.033 14.1 0.4 0.067 13.2 0.3 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SnoaL_3 PF13474.1 gi|110668282|ref|YP_658093.1| - 0.047 13.7 0.3 5 7.1 0.0 2.2 1 1 1 2 2 2 0 SnoaL-like domain SURNod19 PF07712.7 gi|110668282|ref|YP_658093.1| - 0.052 11.9 0.3 0.071 11.5 0.2 1.1 1 0 0 1 1 1 0 Stress up-regulated Nod 19 Ribosomal_S3Ae PF01015.13 gi|110668283|ref|YP_658094.1| - 3.6e-67 225.4 0.2 4.3e-67 225.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Ribosomal_S13_N PF08069.7 gi|110668286|ref|YP_658097.1| - 1e-23 82.8 0.1 1.6e-23 82.2 0.1 1.3 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|110668286|ref|YP_658097.1| - 9.5e-22 76.5 0.5 1.4e-21 76.0 0.3 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 Asp_decarbox PF02261.11 gi|110668287|ref|YP_658098.1| - 5.6e-41 138.7 0.0 6.2e-41 138.6 0.0 1.0 1 0 0 1 1 1 1 Aspartate decarboxylase SHOCT PF09851.4 gi|110668288|ref|YP_658099.1| - 1.6e-08 33.7 1.3 1.6e-08 33.7 0.9 1.8 2 0 0 2 2 2 1 Short C-terminal domain GvpG PF05120.7 gi|110668288|ref|YP_658099.1| - 0.0022 17.7 1.6 0.0022 17.7 1.1 1.6 1 1 1 2 2 2 1 Gas vesicle protein G DUF1707 PF08044.6 gi|110668288|ref|YP_658099.1| - 0.0024 17.5 1.2 0.005 16.5 0.8 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF1707) DHDPS PF00701.17 gi|110668289|ref|YP_658100.1| - 1.4e-63 214.2 0.0 1.6e-63 214.0 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ADH_N PF08240.7 gi|110668290|ref|YP_658101.1| - 1.1e-29 102.3 2.9 2.1e-29 101.4 2.0 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|110668290|ref|YP_658101.1| - 3.3e-20 71.9 0.2 4.9e-20 71.3 0.2 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|110668290|ref|YP_658101.1| - 2.8e-05 25.0 0.1 5.2e-05 24.1 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glyoxalase_2 PF12681.2 gi|110668291|ref|YP_658102.1| - 9.8e-14 51.8 0.0 1.2e-13 51.5 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|110668291|ref|YP_658102.1| - 2.1e-12 47.1 0.0 2.5e-12 46.8 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|110668291|ref|YP_658102.1| - 2e-09 37.4 0.0 2.5e-09 37.1 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|110668291|ref|YP_658102.1| - 0.04 13.8 0.1 0.079 12.8 0.1 1.5 1 1 0 1 1 1 0 Glyoxalase-like domain TENA_THI-4 PF03070.11 gi|110668292|ref|YP_658103.1| - 2.4e-48 164.6 0.1 2.7e-48 164.5 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family SSF PF00474.12 gi|110668293|ref|YP_658104.1| - 2.4e-28 98.9 29.7 3.1e-28 98.5 20.6 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF1684 PF07920.6 gi|110668294|ref|YP_658105.1| - 1.3e-52 177.4 0.0 1.7e-52 177.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) Usp PF00582.21 gi|110668295|ref|YP_658106.1| - 8.6e-27 94.0 0.1 7.3e-26 91.0 0.1 1.9 1 1 0 1 1 1 1 Universal stress protein family SCO1-SenC PF02630.9 gi|110668296|ref|YP_658107.1| - 5.5e-15 55.4 0.0 7.8e-15 54.9 0.0 1.1 1 0 0 1 1 1 1 SCO1/SenC Redoxin PF08534.5 gi|110668297|ref|YP_658108.1| - 7e-09 35.3 0.0 8.7e-09 35.0 0.0 1.2 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|110668297|ref|YP_658108.1| - 5.6e-08 32.7 0.0 9.7e-08 32.0 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.16 gi|110668297|ref|YP_658108.1| - 6.7e-08 32.2 0.0 9e-08 31.8 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin PF00085.15 gi|110668297|ref|YP_658108.1| - 3.8e-06 26.5 0.0 1.4e-05 24.7 0.0 1.9 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|110668297|ref|YP_658108.1| - 0.00041 20.5 0.0 0.0006 19.9 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain Ant_C PF05586.6 gi|110668297|ref|YP_658108.1| - 0.082 13.3 0.0 0.49 10.8 0.0 2.1 2 0 0 2 2 2 0 Anthrax receptor C-terminus region PC4 PF02229.11 gi|110668297|ref|YP_658108.1| - 0.1 11.8 0.1 0.19 10.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional Coactivator p15 (PC4) DsbD PF02683.10 gi|110668298|ref|YP_658109.1| - 3.2e-14 53.0 12.6 4.5e-14 52.5 8.7 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region NTP_transf_3 PF12804.2 gi|110668299|ref|YP_658110.1| - 6.7e-34 117.2 0.0 8.3e-34 116.9 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|110668299|ref|YP_658110.1| - 0.00046 19.8 0.0 0.0011 18.6 0.0 1.6 1 1 0 1 1 1 1 Cytidylyltransferase IspD PF01128.14 gi|110668299|ref|YP_658110.1| - 0.0027 17.2 0.1 0.0049 16.4 0.1 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.18 gi|110668299|ref|YP_658110.1| - 0.0048 16.2 0.0 0.0088 15.3 0.0 1.6 1 1 0 1 1 1 1 Nucleotidyl transferase Glycos_transf_2 PF00535.21 gi|110668299|ref|YP_658110.1| - 0.11 12.2 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 2 ALG3 PF05208.8 gi|110668300|ref|YP_658111.1| - 0.058 12.6 0.7 0.058 12.6 0.5 1.0 1 0 0 1 1 1 0 ALG3 protein GDPD PF03009.12 gi|110668302|ref|YP_658113.1| - 3.1e-28 98.9 0.4 5.9e-27 94.7 0.3 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family adh_short PF00106.20 gi|110668303|ref|YP_658114.1| - 1.4e-27 96.6 0.2 2.2e-27 95.9 0.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|110668303|ref|YP_658114.1| - 7.8e-12 45.4 0.0 1e-11 45.0 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|110668303|ref|YP_658114.1| - 1.6e-09 37.6 0.2 8.6e-09 35.3 0.1 1.8 1 1 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|110668303|ref|YP_658114.1| - 4.9e-09 36.4 0.6 6.1e-09 36.1 0.4 1.3 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|110668303|ref|YP_658114.1| - 2.7e-07 30.2 0.0 3.3e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|110668303|ref|YP_658114.1| - 0.0017 17.2 0.3 0.0022 16.9 0.2 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain THF_DHG_CYH_C PF02882.14 gi|110668303|ref|YP_658114.1| - 0.079 12.0 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 3Beta_HSD PF01073.14 gi|110668303|ref|YP_658114.1| - 0.16 10.6 0.1 0.22 10.1 0.0 1.1 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family RPE65 PF03055.10 gi|110668304|ref|YP_658115.1| - 8.5e-109 364.2 0.0 9.5e-109 364.1 0.0 1.0 1 0 0 1 1 1 1 Retinal pigment epithelial membrane protein IMPDH PF00478.20 gi|110668305|ref|YP_658116.1| - 1.4e-125 418.8 5.5 1.6e-125 418.7 3.8 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.23 gi|110668305|ref|YP_658116.1| - 5.5e-24 83.6 4.2 7e-12 44.9 0.2 2.7 2 0 0 2 2 2 2 CBS domain NMO PF03060.10 gi|110668305|ref|YP_658116.1| - 1.1e-10 41.1 5.2 5.3e-06 25.8 2.0 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|110668305|ref|YP_658116.1| - 8.5e-09 34.7 4.9 1.4e-08 33.9 3.4 1.4 1 1 0 1 1 1 1 FMN-dependent dehydrogenase Glu_synthase PF01645.12 gi|110668305|ref|YP_658116.1| - 0.00032 19.7 5.3 0.00057 18.9 3.7 1.4 1 0 0 1 1 1 1 Conserved region in glutamate synthase DHO_dh PF01180.16 gi|110668305|ref|YP_658116.1| - 0.0004 19.4 3.2 0.00042 19.3 1.5 1.5 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase ThiG PF05690.9 gi|110668305|ref|YP_658116.1| - 0.00061 18.9 2.3 0.00061 18.9 1.6 2.2 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|110668305|ref|YP_658116.1| - 0.0013 17.6 0.1 0.0029 16.4 0.1 1.5 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|110668305|ref|YP_658116.1| - 0.0021 17.3 1.7 0.0044 16.3 0.7 1.8 2 1 0 2 2 2 1 Histidine biosynthesis protein HET-s_218-289 PF11558.3 gi|110668305|ref|YP_658116.1| - 0.07 13.1 0.3 0.19 11.7 0.2 1.7 1 0 0 1 1 1 0 Het-s 218-289 PcrB PF01884.12 gi|110668305|ref|YP_658116.1| - 4.8 6.3 8.2 0.13 11.4 0.4 2.2 3 0 0 3 3 3 0 PcrB family DZR PF12773.2 gi|110668308|ref|YP_658119.1| - 0.033 14.0 0.3 0.053 13.3 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|110668308|ref|YP_658119.1| - 0.059 13.0 1.1 0.12 12.0 0.7 1.5 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 UPF1_Zn_bind PF09416.5 gi|110668308|ref|YP_658119.1| - 0.079 12.5 0.0 0.079 12.5 0.0 1.2 1 0 0 1 1 1 0 RNA helicase (UPF2 interacting domain) zf-RING_3 PF14369.1 gi|110668308|ref|YP_658119.1| - 0.18 11.8 0.3 0.18 11.8 0.2 1.9 2 0 0 2 2 2 0 zinc-finger A2L_zn_ribbon PF08792.5 gi|110668308|ref|YP_658119.1| - 0.4 10.1 2.3 4 7.0 0.2 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|110668308|ref|YP_658119.1| - 0.77 9.7 3.4 9.5 6.2 0.2 2.2 2 0 0 2 2 2 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|110668309|ref|YP_658120.1| - 0.037 13.7 1.2 0.061 13.0 0.8 1.5 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit RecR PF02132.10 gi|110668309|ref|YP_658120.1| - 0.1 12.0 0.6 3.9 6.9 0.0 2.1 2 0 0 2 2 2 0 RecR protein RRN7 PF11781.3 gi|110668309|ref|YP_658120.1| - 0.11 11.9 1.0 4.6 6.8 0.0 2.3 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-FPG_IleRS PF06827.9 gi|110668309|ref|YP_658120.1| - 0.12 12.0 0.1 3.3 7.4 0.0 2.1 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-C2HC5 PF06221.8 gi|110668309|ref|YP_658120.1| - 0.12 12.1 0.6 0.18 11.6 0.4 1.3 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type YhfH PF14149.1 gi|110668309|ref|YP_658120.1| - 0.15 11.8 3.7 4.9 7.0 0.2 2.1 2 0 0 2 2 2 0 YhfH-like protein DUF3797 PF12677.2 gi|110668309|ref|YP_658120.1| - 0.3 10.7 2.9 0.56 9.8 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Zn-ribbon_8 PF09723.5 gi|110668309|ref|YP_658120.1| - 0.32 10.9 2.4 2 8.4 1.7 1.9 1 1 1 2 2 2 0 Zinc ribbon domain zf-IS66 PF13005.2 gi|110668309|ref|YP_658120.1| - 0.37 10.8 1.9 1.3 9.0 0.1 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-dskA_traR PF01258.12 gi|110668309|ref|YP_658120.1| - 1.4 8.7 4.4 7.1 6.4 0.2 2.1 1 1 1 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger 2_5_RNA_ligase2 PF13563.1 gi|110668311|ref|YP_658122.1| - 4e-19 68.8 0.0 5.2e-19 68.4 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.11 gi|110668311|ref|YP_658122.1| - 0.00011 22.1 0.0 0.2 11.6 0.0 2.4 2 0 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.4 gi|110668311|ref|YP_658122.1| - 0.0035 17.0 0.0 0.005 16.5 0.0 1.2 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain Acyl-CoA_dh_1 PF00441.19 gi|110668312|ref|YP_658123.1| - 1.2e-42 145.5 3.3 2.5e-42 144.5 0.9 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|110668312|ref|YP_658123.1| - 6.4e-21 75.0 0.6 1.7e-20 73.6 0.4 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|110668312|ref|YP_658123.1| - 1e-20 72.9 0.4 2.3e-20 71.8 0.3 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|110668312|ref|YP_658123.1| - 5.2e-17 62.3 3.3 1.1e-16 61.2 2.3 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Mor PF08765.6 gi|110668312|ref|YP_658123.1| - 0.068 12.9 0.3 5.5 6.8 0.0 2.7 2 1 0 2 2 2 0 Mor transcription activator family Polysacc_synt_C PF14667.1 gi|110668313|ref|YP_658124.1| - 2.1e-05 24.3 15.7 2.1e-05 24.3 10.9 3.8 2 2 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain NUDIX PF00293.23 gi|110668314|ref|YP_658125.1| - 1e-17 64.0 0.3 1.3e-17 63.6 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain PaaX PF07848.7 gi|110668315|ref|YP_658126.1| - 0.049 13.6 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 PaaX-like protein PqqD PF05402.7 gi|110668316|ref|YP_658127.1| - 0.013 15.5 0.1 0.035 14.1 0.1 1.8 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) ECH PF00378.15 gi|110668317|ref|YP_658128.1| - 4.4e-65 219.2 0.1 4.9e-65 219.0 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family SDH_sah PF01972.11 gi|110668317|ref|YP_658128.1| - 0.0018 17.1 0.0 0.0032 16.2 0.0 1.3 1 0 0 1 1 1 1 Serine dehydrogenase proteinase TFIIS_C PF01096.13 gi|110668318|ref|YP_658129.1| - 4.3e-17 61.4 4.1 4.3e-17 61.4 2.8 3.2 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|110668318|ref|YP_658129.1| - 9.3e-08 31.6 1.5 9.3e-08 31.6 1.0 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|110668318|ref|YP_658129.1| - 1.9e-06 27.5 9.8 0.00033 20.4 0.6 2.5 2 1 0 2 2 2 2 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|110668318|ref|YP_658129.1| - 5.2e-06 26.0 12.3 0.0011 18.5 1.0 2.4 1 1 0 2 2 2 2 Putative transposase DNA-binding domain Prok-RING_1 PF14446.1 gi|110668318|ref|YP_658129.1| - 7.6e-06 25.5 10.5 0.00014 21.5 1.7 3.1 3 0 0 3 3 3 1 Prokaryotic RING finger family 1 Zn_Tnp_IS1595 PF12760.2 gi|110668318|ref|YP_658129.1| - 1.6e-05 24.5 6.3 0.00023 20.8 0.4 2.5 2 1 0 2 2 2 1 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|110668318|ref|YP_658129.1| - 4.2e-05 22.6 8.7 0.51 9.6 0.1 4.1 4 0 0 4 4 4 2 zinc-ribbon domain UPF0547 PF10571.4 gi|110668318|ref|YP_658129.1| - 0.00055 19.5 7.2 0.6 9.8 0.0 4.0 4 0 0 4 4 4 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|110668318|ref|YP_658129.1| - 0.00062 19.1 7.9 2.3 7.8 0.1 4.1 4 0 0 4 4 4 1 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|110668318|ref|YP_658129.1| - 0.0038 16.9 10.1 3.4 7.5 0.1 4.1 4 0 0 4 4 4 0 PhnA Zinc-Ribbon DUF2387 PF09526.5 gi|110668318|ref|YP_658129.1| - 0.0041 17.0 10.3 0.016 15.1 1.1 2.3 2 0 0 2 2 2 1 Probable metal-binding protein (DUF2387) TF_Zn_Ribbon PF08271.7 gi|110668318|ref|YP_658129.1| - 0.0076 15.5 14.1 0.036 13.3 1.8 3.7 2 2 0 2 2 2 1 TFIIB zinc-binding zinc_ribbon_4 PF13717.1 gi|110668318|ref|YP_658129.1| - 0.0087 15.7 7.4 0.53 10.0 0.2 3.7 4 0 0 4 4 3 1 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|110668318|ref|YP_658129.1| - 0.011 15.7 10.9 3.1 7.8 0.0 3.8 3 1 0 3 3 3 0 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|110668318|ref|YP_658129.1| - 0.011 15.3 7.0 0.52 9.9 0.1 3.8 4 0 0 4 4 4 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|110668318|ref|YP_658129.1| - 0.012 15.2 11.2 1.1 9.0 0.1 3.8 3 1 0 3 3 3 0 Nudix N-terminal zf-IS66 PF13005.2 gi|110668318|ref|YP_658129.1| - 0.014 15.3 6.6 25 4.9 0.0 4.1 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 DUF164 PF02591.10 gi|110668318|ref|YP_658129.1| - 0.016 15.0 6.8 5.3 6.9 0.0 3.9 3 1 1 4 4 4 0 Putative zinc ribbon domain RRN7 PF11781.3 gi|110668318|ref|YP_658129.1| - 0.017 14.5 9.3 4.4 6.9 0.6 4.0 4 0 0 4 4 4 0 RNA polymerase I-specific transcription initiation factor Rrn7 Lar_restr_allev PF14354.1 gi|110668318|ref|YP_658129.1| - 0.019 15.2 13.6 0.057 13.7 0.7 2.7 2 1 0 2 2 2 0 Restriction alleviation protein Lar PolC_DP2 PF03833.8 gi|110668318|ref|YP_658129.1| - 0.02 12.5 9.0 0.22 9.1 1.1 2.0 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 A2L_zn_ribbon PF08792.5 gi|110668318|ref|YP_658129.1| - 0.03 13.7 14.2 0.15 11.5 0.1 4.1 3 1 0 4 4 4 0 A2L zinc ribbon domain GFA PF04828.9 gi|110668318|ref|YP_658129.1| - 0.032 14.1 8.1 0.095 12.6 0.1 3.0 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme DNA_RNApol_7kD PF03604.8 gi|110668318|ref|YP_658129.1| - 0.048 13.1 12.7 1 8.9 0.1 3.8 3 1 1 4 4 4 0 DNA directed RNA polymerase, 7 kDa subunit PHF5 PF03660.9 gi|110668318|ref|YP_658129.1| - 0.087 12.8 5.8 1.6 8.8 0.4 2.1 1 1 1 2 2 2 0 PHF5-like protein zf-RING_3 PF14369.1 gi|110668318|ref|YP_658129.1| - 0.093 12.7 9.7 1 9.4 0.1 3.5 3 1 0 3 3 3 0 zinc-finger zf-C4pol PF14260.1 gi|110668318|ref|YP_658129.1| - 0.1 12.5 5.2 1.9 8.5 0.2 2.4 1 1 1 2 2 2 0 C4-type zinc-finger of DNA polymerase delta HypA PF01155.14 gi|110668318|ref|YP_658129.1| - 0.1 12.2 10.8 1.5 8.5 3.5 2.8 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family NinF PF05810.7 gi|110668318|ref|YP_658129.1| - 0.13 12.0 7.4 0.38 10.5 1.0 3.0 2 1 1 3 3 3 0 NinF protein zf-ISL3 PF14690.1 gi|110668318|ref|YP_658129.1| - 0.16 12.0 7.7 0.97 9.5 0.0 3.8 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 YhfH PF14149.1 gi|110668318|ref|YP_658129.1| - 0.17 11.7 16.3 2.7 7.8 4.4 4.1 3 1 1 4 4 4 0 YhfH-like protein C1_1 PF00130.17 gi|110668318|ref|YP_658129.1| - 0.17 11.6 10.2 0.082 12.6 2.2 2.4 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc-ribbons_6 PF07191.7 gi|110668318|ref|YP_658129.1| - 0.17 11.6 8.8 0.84 9.4 0.5 2.5 2 1 0 2 2 2 0 zinc-ribbons Tnp_zf-ribbon_2 PF13842.1 gi|110668318|ref|YP_658129.1| - 0.18 12.2 5.1 42 4.6 0.0 3.2 3 0 0 3 3 3 0 DDE_Tnp_1-like zinc-ribbon zf-C2HC5 PF06221.8 gi|110668318|ref|YP_658129.1| - 0.22 11.2 0.3 0.22 11.2 0.2 2.7 2 1 0 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-C4_Topoisom PF01396.14 gi|110668318|ref|YP_658129.1| - 0.29 10.6 7.9 2 7.9 0.1 3.6 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger zf-UBR PF02207.15 gi|110668318|ref|YP_658129.1| - 0.44 10.2 9.1 0.85 9.3 0.1 3.0 2 1 1 3 3 3 0 Putative zinc finger in N-recognin (UBR box) Terminase_GpA PF05876.7 gi|110668318|ref|YP_658129.1| - 0.45 8.8 6.3 0.074 11.3 1.4 1.7 1 1 0 1 1 1 0 Phage terminase large subunit (GpA) zf-UBP PF02148.14 gi|110668318|ref|YP_658129.1| - 0.49 10.5 6.1 0.46 10.6 1.0 2.3 1 1 1 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein DUF3797 PF12677.2 gi|110668318|ref|YP_658129.1| - 0.56 9.8 6.6 1.5 8.5 0.0 3.2 3 1 1 4 4 4 0 Domain of unknown function (DUF3797) Ribosomal_L37ae PF01780.14 gi|110668318|ref|YP_658129.1| - 0.58 10.0 7.7 0.78 9.6 0.6 2.7 1 1 0 2 2 2 0 Ribosomal L37ae protein family Mut7-C PF01927.11 gi|110668318|ref|YP_658129.1| - 0.9 9.5 5.3 1.6 8.7 0.5 2.2 1 1 1 2 2 2 0 Mut7-C RNAse domain Herpes_UL49_1 PF03117.9 gi|110668318|ref|YP_658129.1| - 0.97 8.4 5.4 11 4.9 0.1 3.0 1 1 2 3 3 3 0 UL49 family DUF2082 PF09855.4 gi|110668318|ref|YP_658129.1| - 1 9.2 9.4 1.5 8.7 1.2 3.3 2 2 1 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DUF3268 PF11672.3 gi|110668318|ref|YP_658129.1| - 1.1 9.3 5.6 2.3 8.3 0.5 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3268) TerY-C PF15616.1 gi|110668318|ref|YP_658129.1| - 1.3 8.9 9.1 0.32 10.9 0.6 2.1 1 1 1 2 2 2 0 TerY-C metal binding domain ADK_lid PF05191.9 gi|110668318|ref|YP_658129.1| - 1.3 8.7 11.4 7 6.4 0.1 4.0 4 0 0 4 4 4 0 Adenylate kinase, active site lid Cytochrom_CIII PF02085.11 gi|110668318|ref|YP_658129.1| - 1.3 9.1 9.8 23 5.1 4.8 2.3 1 1 1 2 2 2 0 Class III cytochrome C family DUF2072 PF09845.4 gi|110668318|ref|YP_658129.1| - 1.5 8.7 7.7 5.4 6.9 0.6 2.5 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) zf-trcl PF13451.1 gi|110668318|ref|YP_658129.1| - 1.6 8.4 12.4 0.75 9.4 0.3 3.9 4 0 0 4 4 4 0 Probable zinc-binding domain IBR PF01485.16 gi|110668318|ref|YP_658129.1| - 1.7 8.5 13.3 8.8 6.2 2.4 3.1 2 1 0 2 2 2 0 IBR domain FYVE_2 PF02318.11 gi|110668318|ref|YP_658129.1| - 1.8 8.5 6.4 0.89 9.4 0.3 2.3 2 1 0 2 2 2 0 FYVE-type zinc finger DUF4428 PF14471.1 gi|110668318|ref|YP_658129.1| - 1.8 8.3 5.5 0.92 9.3 0.3 2.6 3 0 0 3 3 2 0 Domain of unknown function (DUF4428) Jiv90 PF14901.1 gi|110668318|ref|YP_658129.1| - 2.4 8.2 7.9 6.1 6.8 0.6 2.5 2 1 0 2 2 2 0 Cleavage inducing molecular chaperone Rubredoxin PF00301.15 gi|110668318|ref|YP_658129.1| - 2.5 8.0 9.7 13 5.8 0.9 3.7 3 1 0 3 3 3 0 Rubredoxin NOB1_Zn_bind PF08772.6 gi|110668318|ref|YP_658129.1| - 3.1 7.6 12.3 5 7.0 1.6 3.2 2 2 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-RING_5 PF14634.1 gi|110668318|ref|YP_658129.1| - 3.2 7.5 11.4 6.7 6.5 1.6 3.1 2 2 1 3 3 3 0 zinc-RING finger domain Cys_rich_KTR PF14205.1 gi|110668318|ref|YP_658129.1| - 3.3 7.2 6.9 1.5 8.3 0.1 2.8 4 0 0 4 4 2 0 Cysteine-rich KTR FdhE PF04216.7 gi|110668318|ref|YP_658129.1| - 4.6 6.8 8.2 0.22 11.1 0.8 2.0 1 1 0 2 2 2 0 Protein involved in formate dehydrogenase formation NCD3G PF07562.9 gi|110668318|ref|YP_658129.1| - 4.8 6.9 12.3 0.39 10.4 1.1 2.9 2 2 0 2 2 2 0 Nine Cysteines Domain of family 3 GPCR DUF1451 PF07295.6 gi|110668318|ref|YP_658129.1| - 4.8 6.9 9.6 2.8 7.7 0.6 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1451) Methyltransf_13 PF08421.6 gi|110668318|ref|YP_658129.1| - 5.8 6.4 6.9 21 4.6 0.0 3.5 3 1 1 4 4 4 0 Putative zinc binding domain Baculo_LEF5_C PF11792.3 gi|110668318|ref|YP_658129.1| - 6 6.3 10.7 0.43 10.0 1.2 3.1 3 1 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain zf-NADH-PPase PF09297.6 gi|110668318|ref|YP_658129.1| - 6.9 6.2 10.2 24 4.5 1.2 3.9 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain DUF2066 PF09839.4 gi|110668319|ref|YP_658130.1| - 0.063 12.3 0.2 0.087 11.9 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2066) Methyltransf_18 PF12847.2 gi|110668320|ref|YP_658131.1| - 6.2e-15 55.7 0.0 9.3e-15 55.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|110668320|ref|YP_658131.1| - 1.5e-14 53.9 1.1 1.1e-13 51.1 0.7 2.0 1 1 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|110668320|ref|YP_658131.1| - 9e-11 41.7 0.0 5e-09 36.0 0.0 2.0 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.1 gi|110668320|ref|YP_658131.1| - 1.6e-09 37.5 0.0 2.2e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|110668320|ref|YP_658131.1| - 1.2e-08 34.8 0.0 3.5e-08 33.3 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|110668320|ref|YP_658131.1| - 2.4e-08 33.5 0.0 3.6e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|110668320|ref|YP_658131.1| - 6e-08 32.1 0.1 8.4e-08 31.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.14 gi|110668320|ref|YP_658131.1| - 1.7e-07 30.9 0.1 2.4e-07 30.5 0.1 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|110668320|ref|YP_658131.1| - 4.7e-06 25.8 0.0 1.3e-05 24.3 0.0 1.6 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|110668320|ref|YP_658131.1| - 1.9e-05 25.0 0.0 3.9e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|110668320|ref|YP_658131.1| - 2.1e-05 24.8 0.0 3.5e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|110668320|ref|YP_658131.1| - 0.00018 20.6 0.0 0.00023 20.2 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase CMAS PF02353.15 gi|110668320|ref|YP_658131.1| - 0.00048 19.3 0.0 0.0006 18.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase UPF0020 PF01170.13 gi|110668320|ref|YP_658131.1| - 0.0019 17.8 0.0 0.0024 17.4 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.10 gi|110668320|ref|YP_658131.1| - 0.0094 15.3 0.0 0.013 14.8 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.11 gi|110668320|ref|YP_658131.1| - 0.011 15.3 0.0 0.015 14.9 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_25 PF13649.1 gi|110668320|ref|YP_658131.1| - 0.02 15.2 0.0 0.031 14.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain TehB PF03848.9 gi|110668320|ref|YP_658131.1| - 0.057 12.5 0.0 0.089 11.9 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_15 PF09445.5 gi|110668320|ref|YP_658131.1| - 0.11 12.0 0.0 0.15 11.6 0.0 1.1 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase FmrO PF07091.6 gi|110668320|ref|YP_658131.1| - 0.17 10.8 0.0 0.26 10.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) NAC PF01849.13 gi|110668321|ref|YP_658132.1| - 8.1e-18 63.6 0.7 1.2e-17 63.1 0.5 1.3 1 0 0 1 1 1 1 NAC domain UBA PF00627.26 gi|110668321|ref|YP_658132.1| - 0.00016 21.3 0.2 0.00016 21.3 0.1 2.2 2 0 0 2 2 2 1 UBA/TS-N domain UBA_4 PF14555.1 gi|110668321|ref|YP_658132.1| - 0.0037 16.7 0.5 0.0077 15.7 0.3 1.5 1 0 0 1 1 1 1 UBA-like domain LptC PF06835.8 gi|110668321|ref|YP_658132.1| - 0.074 12.4 0.2 0.11 11.9 0.2 1.5 1 1 0 1 1 1 0 Lipopolysaccharide-assembly, LptC-related DUF3867 PF12983.2 gi|110668321|ref|YP_658132.1| - 0.11 12.4 0.2 0.15 12.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3867) MM_CoA_mutase PF01642.17 gi|110668322|ref|YP_658133.1| - 2.6e-204 679.1 3.3 3e-204 678.9 2.3 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Glyoxalase_4 PF13669.1 gi|110668323|ref|YP_658134.1| - 2.9e-16 59.4 0.3 3.3e-16 59.2 0.2 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|110668323|ref|YP_658134.1| - 3.6e-08 33.5 0.3 3.9e-08 33.4 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.2 gi|110668323|ref|YP_658134.1| - 3.5e-05 24.3 0.1 8.2e-05 23.1 0.1 1.6 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|110668323|ref|YP_658134.1| - 0.00013 21.8 0.1 0.00023 21.1 0.1 1.5 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMP-binding PF00501.23 gi|110668324|ref|YP_658135.1| - 8.3e-81 271.5 1.3 9.9e-81 271.2 0.9 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|110668324|ref|YP_658135.1| - 9e-18 64.9 1.7 2e-17 63.9 0.2 2.3 2 1 0 2 2 2 1 AMP-binding enzyme C-terminal domain Metallophos_2 PF12850.2 gi|110668325|ref|YP_658136.1| - 3.5e-09 36.6 1.4 7.3e-09 35.6 1.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|110668325|ref|YP_658136.1| - 7.5e-05 22.2 1.4 0.00046 19.6 0.0 2.2 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|110668327|ref|YP_658138.1| - 0.002 17.9 6.2 0.24 11.2 0.2 3.7 3 1 0 3 3 3 3 OB-fold nucleic acid binding domain UPF0118 PF01594.11 gi|110668328|ref|YP_658139.1| - 2.9e-36 125.1 32.8 3.7e-36 124.7 22.7 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF20 Prominin PF05478.6 gi|110668328|ref|YP_658139.1| - 0.071 10.6 0.2 0.11 10.0 0.2 1.3 1 0 0 1 1 1 0 Prominin DUF2830 PF11125.3 gi|110668328|ref|YP_658139.1| - 2 8.2 8.8 24 4.7 0.0 4.2 4 0 0 4 4 4 0 Protein of unknown function (DUF2830) PadR PF03551.9 gi|110668329|ref|YP_658140.1| - 6.1e-16 57.9 1.4 7.4e-16 57.6 1.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|110668329|ref|YP_658140.1| - 0.0011 19.2 0.0 0.0014 18.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|110668329|ref|YP_658140.1| - 0.0087 15.8 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.6 gi|110668329|ref|YP_658140.1| - 0.021 14.4 0.0 0.032 13.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HypA PF01155.14 gi|110668330|ref|YP_658141.1| - 0.0082 15.8 0.8 0.02 14.6 0.5 1.6 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|110668330|ref|YP_658141.1| - 0.011 15.5 0.7 0.023 14.5 0.5 1.5 1 0 0 1 1 1 0 Double zinc ribbon FdhE PF04216.7 gi|110668330|ref|YP_658141.1| - 0.018 14.7 0.7 0.098 12.3 0.4 2.0 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation UPF0547 PF10571.4 gi|110668330|ref|YP_658141.1| - 0.019 14.6 3.9 0.082 12.6 0.4 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|110668330|ref|YP_658141.1| - 0.023 14.4 2.7 3.9 7.3 0.4 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|110668330|ref|YP_658141.1| - 0.027 13.6 2.5 0.41 9.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|110668330|ref|YP_658141.1| - 0.028 13.7 0.4 0.055 12.8 0.3 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding NinG PF05766.7 gi|110668330|ref|YP_658141.1| - 0.044 13.5 0.0 0.067 12.9 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage Lambda NinG protein Zn-ribbon_8 PF09723.5 gi|110668330|ref|YP_658141.1| - 0.091 12.7 2.1 0.29 11.1 1.5 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|110668330|ref|YP_658141.1| - 0.094 12.3 2.4 1.4 8.5 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|110668330|ref|YP_658141.1| - 0.097 12.1 0.3 0.19 11.1 0.2 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_4 PF13717.1 gi|110668330|ref|YP_658141.1| - 0.18 11.5 2.8 2.1 8.0 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|110668330|ref|YP_658141.1| - 0.27 10.9 1.8 0.53 9.9 1.3 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|110668330|ref|YP_658141.1| - 0.29 10.6 2.5 4.1 7.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|110668330|ref|YP_658141.1| - 0.44 10.3 7.0 1.7 8.4 2.8 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-tcix PF14952.1 gi|110668330|ref|YP_658141.1| - 1.3 8.3 4.2 3.7 6.9 0.3 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DoxX PF07681.7 gi|110668331|ref|YP_658142.1| - 2.2e-08 34.3 20.3 1.2e-07 32.0 3.4 3.3 2 1 0 2 2 2 2 DoxX DoxD PF04173.8 gi|110668331|ref|YP_658142.1| - 0.69 9.5 12.3 15 5.2 0.8 3.7 2 1 1 3 3 3 0 TQO small subunit DoxD Hydrolase_3 PF08282.7 gi|110668333|ref|YP_658144.1| - 3.1e-11 43.3 0.1 0.00014 21.5 0.0 2.5 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|110668333|ref|YP_658144.1| - 0.001 19.2 1.1 0.025 14.7 0.0 2.5 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase CutC PF03932.9 gi|110668333|ref|YP_658144.1| - 0.023 13.9 0.1 0.04 13.1 0.1 1.4 1 0 0 1 1 1 0 CutC family MR_MLE_C PF13378.1 gi|110668334|ref|YP_658145.1| - 8.7e-30 102.9 0.3 2.5e-29 101.4 0.0 1.9 3 0 0 3 3 3 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|110668334|ref|YP_658145.1| - 2.3e-15 56.6 0.1 4.9e-15 55.5 0.1 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|110668334|ref|YP_658145.1| - 1.2e-11 44.9 3.6 1.1e-10 41.8 0.1 3.6 4 0 0 4 4 4 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SBP_bac_11 PF13531.1 gi|110668334|ref|YP_658145.1| - 0.0092 15.6 0.2 0.02 14.5 0.1 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Rubrerythrin PF02915.12 gi|110668335|ref|YP_658146.1| - 0.00081 19.7 1.2 0.0015 18.8 0.8 1.5 1 0 0 1 1 1 1 Rubrerythrin Fer2 PF00111.22 gi|110668336|ref|YP_658147.1| - 2.2e-12 46.5 2.0 2.8e-12 46.2 1.4 1.1 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|110668336|ref|YP_658147.1| - 0.028 14.2 0.1 0.031 14.0 0.1 1.3 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|110668336|ref|YP_658147.1| - 0.078 12.8 0.6 0.41 10.4 0.4 2.2 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain DHODB_Fe-S_bind PF10418.4 gi|110668336|ref|YP_658147.1| - 0.12 11.8 1.3 0.2 11.1 0.2 1.9 3 0 0 3 3 3 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B DUF3054 PF11255.3 gi|110668337|ref|YP_658148.1| - 1.6e-26 92.3 10.1 1.8e-26 92.1 7.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) Methyltransf_11 PF08241.7 gi|110668338|ref|YP_658149.1| - 4e-18 65.7 0.0 5.4e-18 65.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|110668338|ref|YP_658149.1| - 4.2e-14 52.5 0.0 5.3e-14 52.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|110668338|ref|YP_658149.1| - 4e-10 40.0 0.0 8.2e-10 39.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|110668338|ref|YP_658149.1| - 8.7e-09 35.1 0.0 1.4e-08 34.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|110668338|ref|YP_658149.1| - 2.1e-07 30.3 0.0 3.8e-07 29.4 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|110668338|ref|YP_658149.1| - 9.6e-07 29.3 0.1 2.3e-06 28.1 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|110668338|ref|YP_658149.1| - 1e-06 29.0 0.0 1.4e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|110668338|ref|YP_658149.1| - 0.00051 19.7 0.0 0.00062 19.4 0.0 1.1 1 0 0 1 1 1 1 Hypothetical methyltransferase MetW PF07021.7 gi|110668338|ref|YP_658149.1| - 0.0016 17.8 0.0 0.0024 17.2 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_26 PF13659.1 gi|110668338|ref|YP_658149.1| - 0.094 12.7 0.7 0.25 11.3 0.5 1.7 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_2 PF00891.13 gi|110668338|ref|YP_658149.1| - 0.097 11.8 0.5 0.12 11.5 0.3 1.1 1 0 0 1 1 1 0 O-methyltransferase Acetyltransf_1 PF00583.19 gi|110668339|ref|YP_658150.1| - 0.0013 18.6 0.0 0.0023 17.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|110668339|ref|YP_658150.1| - 0.0072 16.0 0.0 0.014 15.0 0.0 1.5 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.1 gi|110668339|ref|YP_658150.1| - 0.075 12.9 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase XPG_I PF00867.13 gi|110668340|ref|YP_658151.1| - 2e-25 88.6 0.0 3.6e-25 87.8 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|110668340|ref|YP_658151.1| - 4.5e-12 46.1 0.0 8.2e-12 45.2 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|110668340|ref|YP_658151.1| - 0.0021 18.2 0.0 0.0041 17.3 0.0 1.5 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold Methyltransf_18 PF12847.2 gi|110668344|ref|YP_658155.1| - 2.5e-06 28.0 0.0 8.6e-06 26.3 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|110668344|ref|YP_658155.1| - 4.8e-05 23.7 0.1 0.00038 20.8 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|110668344|ref|YP_658155.1| - 5.5e-05 22.9 0.0 0.00012 21.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|110668344|ref|YP_658155.1| - 0.00022 21.6 0.1 0.035 14.5 0.1 2.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|110668344|ref|YP_658155.1| - 0.0012 18.4 0.0 0.017 14.6 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|110668344|ref|YP_658155.1| - 0.0033 17.7 0.0 0.0065 16.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|110668344|ref|YP_658155.1| - 0.0043 17.0 0.5 0.025 14.6 0.1 2.3 2 1 0 2 2 2 1 Methyltransferase domain DUF4278 PF14105.1 gi|110668344|ref|YP_658155.1| - 0.13 12.2 0.4 0.64 10.0 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4278) PTPS PF01242.14 gi|110668345|ref|YP_658156.1| - 5.1e-20 71.3 0.0 5.7e-20 71.2 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase ADH_zinc_N PF00107.21 gi|110668346|ref|YP_658157.1| - 5.1e-13 48.7 0.0 1.4e-12 47.3 0.0 1.7 1 0 0 1 1 1 1 Zinc-binding dehydrogenase GGDN PF05165.7 gi|110668347|ref|YP_658158.1| - 9.5e-90 299.9 0.2 1.3e-89 299.5 0.2 1.0 1 0 0 1 1 1 1 GGDN family Sulfatase PF00884.18 gi|110668348|ref|YP_658159.1| - 2.2e-23 82.9 1.7 3.3e-23 82.3 1.2 1.3 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|110668348|ref|YP_658159.1| - 0.018 14.4 1.3 0.024 13.9 0.1 1.9 2 0 0 2 2 2 0 Type I phosphodiesterase / nucleotide pyrophosphatase Cpl-7 PF08230.6 gi|110668348|ref|YP_658159.1| - 0.031 14.0 0.0 1.4 8.6 0.0 2.5 2 0 0 2 2 2 0 Cpl-7 lysozyme C-terminal domain zf-CDGSH PF09360.5 gi|110668349|ref|YP_658160.1| - 2.6e-14 52.7 0.2 4e-14 52.1 0.2 1.3 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type ArsA_ATPase PF02374.10 gi|110668350|ref|YP_658161.1| - 9.4e-77 258.0 0.0 1.1e-76 257.8 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|110668350|ref|YP_658161.1| - 1.4e-08 34.3 0.1 6.7e-08 32.1 0.1 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|110668350|ref|YP_658161.1| - 3.7e-05 23.7 0.1 0.0016 18.4 0.0 2.8 2 1 1 3 3 3 1 AAA domain Fer4_NifH PF00142.13 gi|110668350|ref|YP_658161.1| - 0.00047 19.4 0.1 0.001 18.3 0.0 1.5 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|110668350|ref|YP_658161.1| - 0.021 14.2 2.5 0.022 14.1 0.3 2.2 2 1 0 2 2 2 0 AAA domain YhjQ PF06564.7 gi|110668350|ref|YP_658161.1| - 0.029 13.7 0.0 0.049 12.9 0.0 1.3 1 0 0 1 1 1 0 YhjQ protein PhoH PF02562.11 gi|110668350|ref|YP_658161.1| - 0.029 13.5 0.0 0.055 12.7 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein KaiC PF06745.8 gi|110668350|ref|YP_658161.1| - 0.035 13.2 0.0 0.61 9.1 0.0 2.2 1 1 1 2 2 2 0 KaiC AAA_10 PF12846.2 gi|110668350|ref|YP_658161.1| - 0.041 13.3 0.1 0.067 12.6 0.1 1.5 1 1 0 1 1 1 0 AAA-like domain SRP54 PF00448.17 gi|110668350|ref|YP_658161.1| - 0.16 11.4 0.7 0.88 8.9 0.1 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DPRP PF04244.8 gi|110668351|ref|YP_658162.1| - 1.3e-57 194.8 0.0 4.1e-57 193.2 0.0 1.7 2 0 0 2 2 2 1 Deoxyribodipyrimidine photo-lyase-related protein FAD_binding_7 PF03441.9 gi|110668351|ref|YP_658162.1| - 2.1e-09 36.9 0.4 1e-08 34.7 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain of DNA photolyase RNase_H PF00075.19 gi|110668352|ref|YP_658163.1| - 1.1e-11 45.1 0.0 1.5e-11 44.7 0.0 1.2 1 0 0 1 1 1 1 RNase H RVT_3 PF13456.1 gi|110668352|ref|YP_658163.1| - 2.3e-07 30.4 0.0 3.6e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like TrmB PF01978.14 gi|110668353|ref|YP_658164.1| - 8.2e-09 35.0 0.0 1.2e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|110668353|ref|YP_658164.1| - 0.0003 20.4 0.6 0.00066 19.2 0.1 1.8 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|110668353|ref|YP_658164.1| - 0.001 18.7 0.4 0.0033 17.0 0.1 2.1 2 1 1 3 3 3 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|110668353|ref|YP_658164.1| - 0.0013 18.0 0.1 0.0042 16.4 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|110668353|ref|YP_658164.1| - 0.0056 16.1 0.0 0.0092 15.4 0.0 1.4 1 1 0 1 1 1 1 TFIIE alpha subunit Desulfoferrod_N PF06397.7 gi|110668353|ref|YP_658164.1| - 0.0076 15.6 3.5 0.021 14.1 2.4 1.8 1 1 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain MarR PF01047.17 gi|110668353|ref|YP_658164.1| - 0.0091 15.6 0.1 0.025 14.2 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|110668353|ref|YP_658164.1| - 0.011 15.4 0.3 0.022 14.5 0.2 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|110668353|ref|YP_658164.1| - 0.016 14.7 0.0 0.031 13.8 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|110668353|ref|YP_658164.1| - 0.054 13.6 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator DUF3648 PF12364.3 gi|110668353|ref|YP_658164.1| - 0.074 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3648) Sulfolobus_pRN PF05584.6 gi|110668353|ref|YP_658164.1| - 0.12 12.3 0.1 0.24 11.3 0.0 1.5 1 1 0 1 1 1 0 Sulfolobus plasmid regulatory protein DUF2576 PF10845.3 gi|110668353|ref|YP_658164.1| - 0.16 11.1 1.6 0.45 9.7 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF2576) zf-piccolo PF05715.8 gi|110668354|ref|YP_658165.1| - 0.74 9.8 3.4 1.7 8.6 2.3 1.8 1 1 0 1 1 1 0 Piccolo Zn-finger MFS_1 PF07690.11 gi|110668356|ref|YP_658167.1| - 1.7e-34 119.0 65.3 2.3e-29 102.2 26.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily EamA PF00892.15 gi|110668357|ref|YP_658168.1| - 4.9e-25 87.9 31.4 4.1e-14 52.6 6.9 2.3 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|110668357|ref|YP_658168.1| - 1.1e-07 32.0 39.9 3.3e-07 30.4 7.6 3.4 1 1 2 3 3 3 3 Multidrug resistance efflux transporter UPF0542 PF15086.1 gi|110668357|ref|YP_658168.1| - 0.04 13.6 0.4 0.1 12.2 0.2 1.8 1 0 0 1 1 1 0 Uncharacterised protein family UPF0542 FAD_binding_2 PF00890.19 gi|110668358|ref|YP_658169.1| - 2.4e-89 300.1 7.2 3.2e-89 299.6 5.0 1.2 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|110668358|ref|YP_658169.1| - 6e-20 71.4 0.0 1.5e-19 70.1 0.0 1.7 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|110668358|ref|YP_658169.1| - 3.9e-08 33.4 1.6 1.7e-06 28.0 1.1 2.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|110668358|ref|YP_658169.1| - 3.7e-07 29.3 5.0 1.2e-06 27.7 3.5 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|110668358|ref|YP_658169.1| - 0.00014 20.4 1.7 0.098 11.1 0.0 2.8 3 0 0 3 3 3 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|110668358|ref|YP_658169.1| - 0.00024 20.2 1.7 0.00042 19.4 0.5 1.8 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|110668358|ref|YP_658169.1| - 0.0056 15.5 1.4 0.043 12.6 0.9 2.1 1 1 0 1 1 1 1 Glucose inhibited division protein A ThiF PF00899.16 gi|110668358|ref|YP_658169.1| - 0.038 13.8 0.4 0.09 12.6 0.3 1.6 1 0 0 1 1 1 0 ThiF family Pyr_redox_3 PF13738.1 gi|110668358|ref|YP_658169.1| - 0.051 13.6 0.1 3.9 7.4 0.1 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|110668358|ref|YP_658169.1| - 0.12 12.5 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ApbA PF02558.11 gi|110668358|ref|YP_658169.1| - 0.25 10.7 1.4 0.45 9.9 0.9 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DUF457 PF04307.9 gi|110668359|ref|YP_658170.1| - 1.7e-14 53.4 11.4 2.1e-14 53.1 7.9 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF3976 PF13121.1 gi|110668359|ref|YP_658170.1| - 0.13 12.1 0.6 0.13 12.1 0.4 3.1 3 1 0 3 3 3 0 Domain of unknown function (DUF3976) PDGLE PF13190.1 gi|110668359|ref|YP_658170.1| - 0.33 10.6 9.1 0.81 9.4 0.1 3.5 2 2 2 4 4 4 0 PDGLE domain zf-RING_3 PF14369.1 gi|110668361|ref|YP_658172.1| - 0.00041 20.2 0.7 0.00054 19.8 0.5 1.1 1 0 0 1 1 1 1 zinc-finger Zn-ribbon_8 PF09723.5 gi|110668361|ref|YP_658172.1| - 0.094 12.6 0.7 0.14 12.1 0.5 1.3 1 1 0 1 1 1 0 Zinc ribbon domain ZZ PF00569.12 gi|110668361|ref|YP_658172.1| - 0.12 11.9 0.9 0.98 9.0 0.0 2.0 2 0 0 2 2 2 0 Zinc finger, ZZ type zf-C2H2 PF00096.21 gi|110668361|ref|YP_658172.1| - 0.12 12.7 1.0 2.6 8.5 0.0 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type DZR PF12773.2 gi|110668361|ref|YP_658172.1| - 0.12 12.2 1.4 0.18 11.6 1.0 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-TFIIB PF13453.1 gi|110668361|ref|YP_658172.1| - 0.14 11.4 0.8 0.16 11.1 0.5 1.2 1 0 0 1 1 1 0 Transcription factor zinc-finger zinc_ribbon_5 PF13719.1 gi|110668361|ref|YP_658172.1| - 2.5 7.7 6.5 1.7 8.3 0.9 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|110668361|ref|YP_658172.1| - 2.8 7.7 6.8 1.7 8.3 0.9 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DAO PF01266.19 gi|110668362|ref|YP_658173.1| - 7.5e-09 34.9 1.1 8.4e-06 24.9 1.0 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|110668362|ref|YP_658173.1| - 1.1e-08 35.1 0.2 1e-07 32.0 0.0 1.9 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|110668362|ref|YP_658173.1| - 4.7e-08 32.3 2.2 7e-08 31.7 0.9 1.7 1 1 1 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|110668362|ref|YP_658173.1| - 5.7e-08 32.0 3.4 2.4e-06 26.6 0.1 2.9 1 1 1 3 3 3 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|110668362|ref|YP_658173.1| - 2.5e-05 22.9 0.3 0.00015 20.3 0.1 1.9 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.2 gi|110668362|ref|YP_658173.1| - 4.5e-05 22.7 0.2 6.6e-05 22.1 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|110668362|ref|YP_658173.1| - 9.7e-05 22.5 3.0 0.22 11.5 1.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|110668362|ref|YP_658173.1| - 0.00021 20.4 0.1 0.00032 19.8 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.13 gi|110668362|ref|YP_658173.1| - 0.00035 20.2 0.5 0.0008 19.1 0.4 1.6 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|110668362|ref|YP_658173.1| - 0.00048 20.0 0.1 0.0011 18.9 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|110668362|ref|YP_658173.1| - 0.00068 19.9 0.7 0.0015 18.9 0.5 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|110668362|ref|YP_658173.1| - 0.002 17.2 0.4 0.0084 15.2 0.1 1.9 2 0 0 2 2 2 1 Thi4 family AlaDh_PNT_C PF01262.16 gi|110668362|ref|YP_658173.1| - 0.0024 17.4 2.1 0.0036 16.8 1.1 1.8 1 1 1 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|110668362|ref|YP_658173.1| - 0.063 13.5 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Lycopene_cycl PF05834.7 gi|110668362|ref|YP_658173.1| - 0.069 12.0 1.4 0.13 11.1 0.6 1.7 1 1 1 2 2 2 0 Lycopene cyclase protein Pico_P1A PF02226.11 gi|110668363|ref|YP_658174.1| - 0.018 14.7 0.1 0.032 13.9 0.1 1.3 1 0 0 1 1 1 0 Picornavirus coat protein (VP4) BALF1 PF06861.6 gi|110668363|ref|YP_658174.1| - 0.044 13.1 0.0 0.067 12.6 0.0 1.3 1 0 0 1 1 1 0 BALF1 protein TetR_N PF00440.18 gi|110668363|ref|YP_658174.1| - 0.16 11.6 0.1 3.5 7.3 0.0 2.6 3 0 0 3 3 3 0 Bacterial regulatory proteins, tetR family adh_short PF00106.20 gi|110668364|ref|YP_658175.1| - 1.2e-36 126.1 2.6 1.2e-36 126.1 1.8 1.7 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|110668364|ref|YP_658175.1| - 3.6e-15 56.0 0.9 5.5e-15 55.4 0.6 1.2 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|110668364|ref|YP_658175.1| - 2e-14 53.9 0.1 2.9e-14 53.4 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NAD_binding_10 PF13460.1 gi|110668364|ref|YP_658175.1| - 4.8e-05 23.4 2.2 7.6e-05 22.7 1.6 1.5 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|110668364|ref|YP_658175.1| - 6.1e-05 22.5 0.2 0.00015 21.3 0.1 1.8 1 1 1 2 2 2 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|110668364|ref|YP_658175.1| - 0.0011 17.8 0.0 0.0015 17.4 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein F420_oxidored PF03807.12 gi|110668364|ref|YP_658175.1| - 0.0018 18.6 0.4 0.0037 17.6 0.3 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|110668364|ref|YP_658175.1| - 0.009 15.4 0.0 0.017 14.6 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|110668364|ref|YP_658175.1| - 0.011 15.3 3.5 0.029 14.0 1.1 2.4 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Eno-Rase_NADH_b PF12242.3 gi|110668364|ref|YP_658175.1| - 0.032 14.0 0.2 0.095 12.5 0.1 1.8 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NAD_Gly3P_dh_N PF01210.18 gi|110668364|ref|YP_658175.1| - 0.036 13.7 0.1 0.064 12.9 0.1 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_7 PF13241.1 gi|110668364|ref|YP_658175.1| - 0.04 14.1 0.5 0.078 13.2 0.1 1.6 2 0 0 2 2 2 0 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|110668364|ref|YP_658175.1| - 0.044 12.9 0.0 0.087 11.9 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CoA_binding_2 PF13380.1 gi|110668364|ref|YP_658175.1| - 0.073 13.2 0.4 1.3 9.2 0.2 2.5 3 0 0 3 3 3 0 CoA binding domain Shikimate_DH PF01488.15 gi|110668364|ref|YP_658175.1| - 0.094 12.8 0.1 0.19 11.8 0.1 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase MR_MLE_C PF13378.1 gi|110668364|ref|YP_658175.1| - 0.095 12.6 0.2 0.45 10.5 0.0 2.1 1 1 1 2 2 2 0 Enolase C-terminal domain-like Bmp PF02608.9 gi|110668366|ref|YP_658177.1| - 8.2e-58 195.5 2.8 1.2e-57 195.0 2.0 1.2 1 0 0 1 1 1 1 Basic membrane protein Peripla_BP_4 PF13407.1 gi|110668366|ref|YP_658177.1| - 0.00067 19.0 5.5 0.0013 18.1 3.8 1.4 1 1 0 1 1 1 1 Periplasmic binding protein domain OMP_b-brl_2 PF13568.1 gi|110668366|ref|YP_658177.1| - 0.0016 18.2 0.1 0.0033 17.2 0.0 1.5 1 0 0 1 1 1 1 Outer membrane protein beta-barrel domain TAT_signal PF10518.4 gi|110668366|ref|YP_658177.1| - 0.11 12.5 0.6 0.11 12.5 0.4 2.4 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|110668367|ref|YP_658178.1| - 1.5e-45 154.8 0.0 1.7e-28 99.6 0.0 2.8 3 0 0 3 3 3 2 ABC transporter AAA_21 PF13304.1 gi|110668367|ref|YP_658178.1| - 1.3e-11 45.0 0.0 0.00012 22.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|110668367|ref|YP_658178.1| - 4.5e-05 22.9 0.0 0.0047 16.4 0.0 2.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|110668367|ref|YP_658178.1| - 0.00013 21.1 0.0 0.0093 15.1 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|110668367|ref|YP_658178.1| - 0.00097 18.2 0.0 0.99 8.3 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|110668367|ref|YP_658178.1| - 0.0032 17.8 0.0 0.0075 16.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|110668367|ref|YP_658178.1| - 0.0094 15.2 0.1 2.2 7.4 0.0 3.0 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain Bac_DnaA PF00308.13 gi|110668367|ref|YP_658178.1| - 0.012 15.2 0.7 0.036 13.6 0.0 2.0 2 0 0 2 2 2 0 Bacterial dnaA protein MMR_HSR1 PF01926.18 gi|110668367|ref|YP_658178.1| - 0.061 13.2 0.1 1.9 8.4 0.0 2.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase UPF0079 PF02367.12 gi|110668367|ref|YP_658178.1| - 0.11 12.0 0.0 0.27 10.8 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 BPD_transp_2 PF02653.11 gi|110668368|ref|YP_658179.1| - 1.6e-45 155.2 30.6 1.8e-45 154.9 21.2 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF1378 PF07125.6 gi|110668368|ref|YP_658179.1| - 0.053 13.4 0.0 0.19 11.6 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1378) BPD_transp_2 PF02653.11 gi|110668369|ref|YP_658180.1| - 1.2e-38 132.6 35.8 1.2e-38 132.6 24.8 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component DUF3093 PF11292.3 gi|110668369|ref|YP_658180.1| - 3.4 7.4 7.8 5.6 6.7 0.0 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF3093) Proteasome PF00227.21 gi|110668370|ref|YP_658181.1| - 1.4e-51 174.4 0.0 1.8e-51 174.1 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|110668370|ref|YP_658181.1| - 1.7e-12 46.3 0.2 2.8e-12 45.6 0.1 1.4 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature DUF4169 PF13770.1 gi|110668370|ref|YP_658181.1| - 0.022 14.7 0.1 0.044 13.7 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4169) DHFR_1 PF00186.14 gi|110668371|ref|YP_658182.1| - 4.7e-47 159.5 0.0 5.7e-47 159.2 0.0 1.1 1 0 0 1 1 1 1 Dihydrofolate reductase Thymidylat_synt PF00303.14 gi|110668372|ref|YP_658183.1| - 1.6e-92 309.3 0.0 1.8e-92 309.1 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase Lactamase_B PF00753.22 gi|110668373|ref|YP_658184.1| - 1.2e-19 70.7 3.8 1.5e-19 70.3 2.6 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|110668373|ref|YP_658184.1| - 0.0016 17.9 1.8 0.0022 17.5 1.2 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain zf-CSL PF05207.8 gi|110668375|ref|YP_658186.1| - 0.041 13.4 0.4 0.054 13.0 0.3 1.2 1 0 0 1 1 1 0 CSL zinc finger cEGF PF12662.2 gi|110668375|ref|YP_658186.1| - 0.15 11.7 1.1 0.22 11.2 0.7 1.5 1 1 0 1 1 1 0 Complement Clr-like EGF-like Tnp_DNA_bind PF14706.1 gi|110668376|ref|YP_658187.1| - 2.2e-24 84.9 0.0 3.8e-24 84.1 0.0 1.4 1 0 0 1 1 1 1 Transposase DNA-binding DDE_Tnp_1 PF01609.16 gi|110668376|ref|YP_658187.1| - 0.00045 19.8 0.2 0.00083 18.9 0.1 1.5 1 1 0 1 1 1 1 Transposase DDE domain Dimer_Tnp_Tn5 PF02281.11 gi|110668376|ref|YP_658187.1| - 0.093 12.8 0.0 0.25 11.4 0.0 1.7 2 0 0 2 2 2 0 Transposase Tn5 dimerisation domain DUF2155 PF09923.4 gi|110668376|ref|YP_658187.1| - 0.14 12.3 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2155) Sod_Fe_C PF02777.13 gi|110668377|ref|YP_658188.1| - 1.9e-36 124.1 0.1 3.1e-36 123.4 0.1 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|110668377|ref|YP_658188.1| - 6.5e-29 100.0 0.8 1e-28 99.4 0.5 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain DUF2237 PF09996.4 gi|110668378|ref|YP_658189.1| - 5.8e-51 170.8 0.0 6.8e-51 170.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2237) FAD_binding_7 PF03441.9 gi|110668379|ref|YP_658190.1| - 8.7e-101 336.7 0.8 1.1e-100 336.3 0.6 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|110668379|ref|YP_658190.1| - 3.3e-44 150.5 0.1 2.2e-43 147.8 0.0 2.1 2 0 0 2 2 2 1 DNA photolyase MAF_flag10 PF01973.13 gi|110668380|ref|YP_658191.1| - 2.3e-26 92.3 0.0 3e-26 91.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 Pterin_bind PF00809.17 gi|110668381|ref|YP_658192.1| - 7.2e-30 103.9 0.0 1.5e-29 102.9 0.0 1.5 1 0 0 1 1 1 1 Pterin binding enzyme SpoU_methylase PF00588.14 gi|110668383|ref|YP_658194.1| - 4.2e-30 104.4 0.0 6.8e-30 103.8 0.0 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family DUF1675 PF07897.6 gi|110668383|ref|YP_658194.1| - 0.011 15.6 0.7 0.015 15.2 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1675) GatB_N PF02934.10 gi|110668384|ref|YP_658195.1| - 2.5e-73 246.4 0.0 3.4e-73 246.0 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|110668384|ref|YP_658195.1| - 2.4e-21 76.0 0.1 5.9e-21 74.7 0.0 1.7 2 0 0 2 2 2 1 GatB domain GAD PF02938.9 gi|110668384|ref|YP_658195.1| - 1.5e-12 47.4 0.0 3.3e-12 46.3 0.0 1.6 1 0 0 1 1 1 1 GAD domain YqeY PF09424.5 gi|110668384|ref|YP_658195.1| - 0.0019 18.0 0.4 0.0054 16.5 0.3 1.8 1 0 0 1 1 1 1 Yqey-like protein Lyase_1 PF00206.15 gi|110668385|ref|YP_658196.1| - 2.5e-105 352.1 0.1 3.2e-105 351.7 0.1 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|110668385|ref|YP_658196.1| - 2e-23 82.2 0.1 6.4e-23 80.5 0.1 2.0 1 0 0 1 1 1 1 Fumarase C C-terminus LacAB_rpiB PF02502.13 gi|110668385|ref|YP_658196.1| - 0.045 13.3 0.2 0.13 11.9 0.1 1.7 1 0 0 1 1 1 0 Ribose/Galactose Isomerase BolA PF01722.13 gi|110668386|ref|YP_658197.1| - 9.8e-22 76.7 0.0 1.1e-21 76.5 0.0 1.1 1 0 0 1 1 1 1 BolA-like protein Aph-1 PF06105.7 gi|110668387|ref|YP_658198.1| - 0.02 14.1 0.1 0.02 14.1 0.0 1.8 1 1 1 2 2 2 0 Aph-1 protein BPD_transp_1 PF00528.17 gi|110668388|ref|YP_658199.1| - 2.5e-33 115.1 8.0 2.5e-33 115.1 5.5 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|110668388|ref|YP_658199.1| - 0.0047 16.2 2.5 0.0047 16.2 1.7 2.5 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|110668389|ref|YP_658200.1| - 1.3e-36 125.8 13.1 2.1e-36 125.1 9.1 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|110668390|ref|YP_658201.1| - 8.3e-76 255.2 1.2 1.2e-75 254.6 0.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|110668390|ref|YP_658201.1| - 0.00015 21.4 2.3 0.00037 20.2 1.6 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|110668391|ref|YP_658202.1| - 6.4e-58 194.9 0.0 9.2e-30 103.7 0.0 2.6 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|110668391|ref|YP_658202.1| - 2.5e-41 139.8 3.3 7.5e-22 77.4 0.1 2.6 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|110668391|ref|YP_658202.1| - 1.2e-15 58.2 0.3 3.1e-07 30.6 0.0 3.9 3 1 1 4 4 4 2 AAA domain SMC_N PF02463.14 gi|110668391|ref|YP_658202.1| - 6.4e-11 41.8 0.0 2.3e-06 26.9 0.0 3.1 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|110668391|ref|YP_658202.1| - 7.5e-06 25.3 2.0 0.059 12.9 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|110668391|ref|YP_658202.1| - 1.6e-05 24.9 0.6 0.17 11.8 0.1 2.9 2 1 0 2 2 2 2 AAA ATPase domain AAA_25 PF13481.1 gi|110668391|ref|YP_658202.1| - 3.1e-05 23.4 0.1 0.94 8.8 0.0 4.1 4 0 0 4 4 4 2 AAA domain ATP-synt_ab PF00006.20 gi|110668391|ref|YP_658202.1| - 4.3e-05 23.1 0.2 0.022 14.2 0.0 2.8 2 1 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_22 PF13401.1 gi|110668391|ref|YP_658202.1| - 4.7e-05 23.5 5.9 0.009 16.1 0.3 4.3 3 2 0 3 3 3 1 AAA domain AAA_10 PF12846.2 gi|110668391|ref|YP_658202.1| - 0.0001 21.8 0.0 0.035 13.5 0.0 2.8 2 0 0 2 2 2 1 AAA-like domain AAA_15 PF13175.1 gi|110668391|ref|YP_658202.1| - 0.00034 19.7 0.3 0.21 10.5 0.0 2.8 3 0 0 3 3 3 2 AAA ATPase domain AAA_5 PF07728.9 gi|110668391|ref|YP_658202.1| - 0.00095 18.9 0.0 0.43 10.2 0.0 2.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AIG1 PF04548.11 gi|110668391|ref|YP_658202.1| - 0.0013 17.9 0.7 0.084 11.9 0.1 2.5 2 0 0 2 2 2 1 AIG1 family DUF258 PF03193.11 gi|110668391|ref|YP_658202.1| - 0.0039 16.4 0.7 0.71 9.0 0.0 2.7 2 1 0 2 2 2 1 Protein of unknown function, DUF258 Hpr_kinase_C PF07475.7 gi|110668391|ref|YP_658202.1| - 0.015 14.6 2.6 1.2 8.3 0.0 2.4 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain AAA_18 PF13238.1 gi|110668391|ref|YP_658202.1| - 0.024 14.9 0.0 2 8.7 0.0 3.1 3 0 0 3 3 2 0 AAA domain Sigma54_activat PF00158.21 gi|110668391|ref|YP_658202.1| - 0.025 14.0 0.8 6.7 6.1 0.0 3.2 4 0 0 4 4 3 0 Sigma-54 interaction domain NB-ARC PF00931.17 gi|110668391|ref|YP_658202.1| - 0.06 12.1 1.4 2.6 6.8 0.1 2.3 2 0 0 2 2 2 0 NB-ARC domain RNA_helicase PF00910.17 gi|110668391|ref|YP_658202.1| - 0.062 13.4 0.0 4.2 7.5 0.0 2.6 2 0 0 2 2 2 0 RNA helicase AAA_30 PF13604.1 gi|110668391|ref|YP_658202.1| - 0.062 12.8 1.2 1.9 8.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|110668391|ref|YP_658202.1| - 0.069 12.0 1.3 1.7 7.5 0.0 2.7 3 0 0 3 3 3 0 Type II/IV secretion system protein PRK PF00485.13 gi|110668391|ref|YP_658202.1| - 0.077 12.5 0.4 0.59 9.6 0.0 2.2 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family DUF87 PF01935.12 gi|110668391|ref|YP_658202.1| - 0.084 12.6 1.5 13 5.4 0.1 2.8 2 0 0 2 2 2 0 Domain of unknown function DUF87 NACHT PF05729.7 gi|110668391|ref|YP_658202.1| - 0.094 12.3 0.8 3 7.4 0.0 2.5 2 0 0 2 2 2 0 NACHT domain Zeta_toxin PF06414.7 gi|110668391|ref|YP_658202.1| - 0.098 11.7 0.5 1.3 8.0 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin AAA PF00004.24 gi|110668391|ref|YP_658202.1| - 0.1 12.8 0.0 3.7 7.7 0.0 3.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|110668391|ref|YP_658202.1| - 0.11 11.6 0.0 14 4.7 0.0 3.0 4 0 0 4 4 4 0 Magnesium chelatase, subunit ChlI KaiC PF06745.8 gi|110668391|ref|YP_658202.1| - 0.12 11.4 0.2 6.5 5.7 0.0 2.6 2 0 0 2 2 2 0 KaiC DUF3265 PF11665.3 gi|110668391|ref|YP_658202.1| - 1 9.2 2.8 2.8 7.8 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3265) DUF3530 PF12048.3 gi|110668392|ref|YP_658203.1| - 0.095 11.6 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3530) HhH-GPD PF00730.20 gi|110668394|ref|YP_658205.1| - 1.7e-13 50.8 0.0 2.7e-13 50.1 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|110668394|ref|YP_658205.1| - 7.3e-09 34.8 0.0 1.3e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif Y1_Tnp PF01797.11 gi|110668395|ref|YP_658206.1| - 0.059 13.2 0.4 0.23 11.3 0.3 1.8 1 1 0 1 1 1 0 Transposase IS200 like RHH_1 PF01402.16 gi|110668396|ref|YP_658207.1| - 2.1e-06 27.3 0.0 2.3e-06 27.2 0.0 1.0 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family ParG PF09274.5 gi|110668396|ref|YP_658207.1| - 0.00021 21.1 0.1 0.00022 21.0 0.1 1.0 1 0 0 1 1 1 1 ParG OrfB_Zn_ribbon PF07282.6 gi|110668397|ref|YP_658208.1| - 6.9e-21 73.6 0.4 1.2e-20 72.9 0.3 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|110668397|ref|YP_658208.1| - 0.0056 16.4 7.5 0.011 15.4 5.2 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain MoCF_biosynth PF00994.19 gi|110668399|ref|YP_658210.1| - 2e-36 124.5 0.4 3.2e-36 123.9 0.3 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain Lipase_GDSL_2 PF13472.1 gi|110668399|ref|YP_658210.1| - 0.07 13.2 0.2 0.19 11.8 0.2 1.8 1 1 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family DUF3459 PF11941.3 gi|110668400|ref|YP_658211.1| - 0.15 12.1 0.1 20 5.3 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3459) TauE PF01925.14 gi|110668400|ref|YP_658211.1| - 0.24 10.8 2.6 0.27 10.6 0.6 1.8 2 0 0 2 2 2 0 Sulfite exporter TauE/SafE DUF2110 PF09883.4 gi|110668401|ref|YP_658212.1| - 1.2e-90 303.1 0.0 1.5e-90 302.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) TFIIE_alpha PF02002.12 gi|110668402|ref|YP_658213.1| - 1.1e-20 73.0 0.1 1.8e-20 72.3 0.0 1.4 2 0 0 2 2 2 1 TFIIE alpha subunit Sigma70_r3 PF04539.11 gi|110668402|ref|YP_658213.1| - 0.0032 17.3 0.1 0.007 16.2 0.0 1.5 1 0 0 1 1 1 1 Sigma-70 region 3 HTH_20 PF12840.2 gi|110668402|ref|YP_658213.1| - 0.052 13.3 0.3 0.21 11.3 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2746 PF10874.3 gi|110668402|ref|YP_658213.1| - 2.9 8.1 8.4 4.6 7.5 0.1 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2746) Trm56 PF01994.11 gi|110668403|ref|YP_658214.1| - 1.3e-46 157.3 0.0 1.6e-46 156.9 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 Phage_min_tail PF05939.8 gi|110668403|ref|YP_658214.1| - 0.11 12.4 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 Phage minor tail protein DAO PF01266.19 gi|110668404|ref|YP_658215.1| - 2.9e-15 56.0 0.0 4.6e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|110668404|ref|YP_658215.1| - 0.011 15.6 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|110668404|ref|YP_658215.1| - 0.087 13.2 0.1 0.17 12.3 0.1 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Epimerase PF01370.16 gi|110668405|ref|YP_658216.1| - 8.9e-49 166.0 0.0 1.1e-48 165.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|110668405|ref|YP_658216.1| - 1.7e-22 79.6 0.0 2.2e-22 79.2 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|110668405|ref|YP_658216.1| - 2.7e-15 56.0 0.1 1.8e-14 53.3 0.1 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|110668405|ref|YP_658216.1| - 1.7e-14 53.1 0.0 2.4e-14 52.6 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|110668405|ref|YP_658216.1| - 1.1e-10 40.8 0.0 2.4e-08 33.1 0.0 2.2 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|110668405|ref|YP_658216.1| - 9.2e-08 32.2 0.0 1.2e-07 31.9 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|110668405|ref|YP_658216.1| - 0.00014 21.8 0.4 0.00034 20.5 0.1 1.9 2 0 0 2 2 2 1 short chain dehydrogenase TrkA_N PF02254.13 gi|110668405|ref|YP_658216.1| - 0.0015 18.4 0.1 0.0029 17.5 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain Ldh_1_N PF00056.18 gi|110668405|ref|YP_658216.1| - 0.0029 17.4 0.1 0.0055 16.5 0.1 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|110668405|ref|YP_658216.1| - 0.011 14.6 0.2 0.021 13.7 0.1 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NmrA PF05368.8 gi|110668405|ref|YP_658216.1| - 0.025 13.8 0.4 0.57 9.3 0.1 2.1 2 0 0 2 2 2 0 NmrA-like family DUF3919 PF13057.1 gi|110668405|ref|YP_658216.1| - 0.027 13.9 0.1 0.051 13.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3919) DUF1188 PF06690.6 gi|110668405|ref|YP_658216.1| - 0.11 11.6 0.9 0.34 9.9 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) KR PF08659.5 gi|110668405|ref|YP_658216.1| - 0.19 11.3 0.8 0.85 9.2 0.4 2.1 1 1 0 1 1 1 0 KR domain DUF2797 PF10977.3 gi|110668406|ref|YP_658217.1| - 5.3e-67 225.8 0.1 6.2e-67 225.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2797) VASP_tetra PF08776.6 gi|110668407|ref|YP_658218.1| - 0.035 13.4 0.8 0.059 12.6 0.5 1.4 1 0 0 1 1 1 0 VASP tetramerisation domain ABC_trans_N PF14510.1 gi|110668407|ref|YP_658218.1| - 0.68 10.0 3.6 6.4 6.9 0.0 2.1 2 0 0 2 2 2 0 ABC-transporter extracellular N-terminal DivIVA PF05103.8 gi|110668407|ref|YP_658218.1| - 2.3 8.2 7.5 1.5 8.9 0.3 2.0 2 0 0 2 2 2 0 DivIVA protein DUF4140 PF13600.1 gi|110668407|ref|YP_658218.1| - 4.3 7.8 9.1 0.46 10.9 0.8 2.1 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) IncA PF04156.9 gi|110668407|ref|YP_658218.1| - 5.2 6.6 6.4 2.1 7.9 0.8 2.0 2 0 0 2 2 2 0 IncA protein Cwf_Cwc_15 PF04889.7 gi|110668407|ref|YP_658218.1| - 6.1 6.4 19.5 3 7.4 9.5 2.0 2 0 0 2 2 2 0 Cwf15/Cwc15 cell cycle control protein IU_nuc_hydro PF01156.14 gi|110668408|ref|YP_658219.1| - 7.9e-79 265.1 5.3 8.9e-79 264.9 3.7 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase DUF1593 PF07632.6 gi|110668408|ref|YP_658219.1| - 0.06 12.6 0.3 1.1 8.5 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1593) Glycos_transf_1 PF00534.15 gi|110668409|ref|YP_658220.1| - 5.5e-27 94.2 0.0 1e-24 86.8 0.0 2.3 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|110668409|ref|YP_658220.1| - 8.8e-14 51.9 0.1 1.7e-13 51.0 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|110668409|ref|YP_658220.1| - 3.2e-13 49.9 0.0 1.6e-10 41.2 0.0 3.4 4 0 0 4 4 4 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|110668409|ref|YP_658220.1| - 3.5e-11 43.1 0.0 6e-11 42.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|110668409|ref|YP_658220.1| - 0.00011 22.0 0.0 0.0004 20.2 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|110668409|ref|YP_658220.1| - 0.026 14.7 0.0 0.087 13.0 0.0 1.8 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|110668410|ref|YP_658221.1| - 6.2e-20 71.3 0.0 2.3e-19 69.4 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|110668410|ref|YP_658221.1| - 1.8e-15 57.2 0.0 1.5e-13 51.0 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|110668410|ref|YP_658221.1| - 4.4e-11 42.9 0.1 8e-11 42.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|110668410|ref|YP_658221.1| - 4e-09 36.4 0.0 6.6e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|110668410|ref|YP_658221.1| - 4.9e-09 36.5 0.0 7.2e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Rpr2 PF04032.11 gi|110668411|ref|YP_658222.1| - 3.3e-17 62.1 0.2 3.8e-17 61.9 0.2 1.0 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF164 PF02591.10 gi|110668411|ref|YP_658222.1| - 0.0031 17.3 1.8 0.0049 16.6 0.6 1.9 2 1 0 2 2 2 1 Putative zinc ribbon domain DUF1771 PF08590.5 gi|110668411|ref|YP_658222.1| - 0.005 16.8 0.2 0.0073 16.2 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1771) DNA_RNApol_7kD PF03604.8 gi|110668411|ref|YP_658222.1| - 0.092 12.2 1.1 0.2 11.1 0.1 1.9 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-DNL PF05180.7 gi|110668411|ref|YP_658222.1| - 0.095 12.4 0.3 0.17 11.5 0.2 1.4 1 0 0 1 1 1 0 DNL zinc finger CRS1_YhbY PF01985.16 gi|110668412|ref|YP_658223.1| - 1.2e-18 66.8 0.0 1.5e-18 66.5 0.0 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain MS_channel PF00924.13 gi|110668413|ref|YP_658224.1| - 2.3e-49 167.5 0.1 3.5e-49 166.9 0.0 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel CopD PF05425.8 gi|110668413|ref|YP_658224.1| - 2.4 8.3 9.5 0.21 11.8 2.7 1.9 1 1 1 2 2 2 0 Copper resistance protein D HD PF01966.17 gi|110668414|ref|YP_658225.1| - 1.3e-09 38.1 1.3 2.1e-09 37.4 0.9 1.5 1 0 0 1 1 1 1 HD domain MttA_Hcf106 PF02416.11 gi|110668415|ref|YP_658226.1| - 2.8e-15 55.1 0.0 3e-15 55.0 0.0 1.2 1 0 0 1 1 1 1 mttA/Hcf106 family NSP2-B_epitope PF14757.1 gi|110668415|ref|YP_658226.1| - 0.012 15.0 0.3 0.014 14.8 0.2 1.0 1 0 0 1 1 1 0 Immunogenic region of nsp2 protein of arterivirus polyprotein MatE PF01554.13 gi|110668416|ref|YP_658227.1| - 3.6e-62 208.7 36.4 5.5e-35 120.3 10.7 2.7 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|110668416|ref|YP_658227.1| - 1.1e-10 41.4 4.9 1.1e-10 41.4 3.4 4.6 5 1 0 5 5 5 1 Polysaccharide biosynthesis C-terminal domain Lin-8 PF03353.10 gi|110668417|ref|YP_658228.1| - 0.26 10.5 3.1 0.31 10.2 2.1 1.1 1 0 0 1 1 1 0 Ras-mediated vulval-induction antagonist Glycos_transf_1 PF00534.15 gi|110668418|ref|YP_658229.1| - 1.9e-29 102.2 0.0 3e-29 101.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|110668418|ref|YP_658229.1| - 3.5e-17 62.8 0.0 9.4e-17 61.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|110668418|ref|YP_658229.1| - 5.1e-16 59.2 0.4 9.3e-16 58.3 0.3 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|110668418|ref|YP_658229.1| - 1.8e-08 34.3 0.0 4e-08 33.1 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.6 gi|110668418|ref|YP_658229.1| - 8e-06 25.5 0.2 0.15 11.5 0.0 2.8 1 1 1 2 2 2 2 Starch synthase catalytic domain RibD_C PF01872.12 gi|110668419|ref|YP_658230.1| - 1.5e-49 168.3 0.1 1.7e-49 168.1 0.1 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Sugar-bind PF04198.8 gi|110668419|ref|YP_658230.1| - 0.062 12.1 0.0 0.099 11.5 0.0 1.3 1 0 0 1 1 1 0 Putative sugar-binding domain Thioredoxin PF00085.15 gi|110668420|ref|YP_658231.1| - 3.7e-27 94.0 0.0 4.2e-27 93.8 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|110668420|ref|YP_658231.1| - 2.3e-08 34.2 0.1 1.7e-07 31.3 0.1 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|110668420|ref|YP_658231.1| - 6.4e-05 23.0 0.1 0.00034 20.6 0.0 2.0 2 1 1 3 3 3 1 Thioredoxin-like Thioredoxin_7 PF13899.1 gi|110668420|ref|YP_658231.1| - 0.0006 19.7 0.0 0.00086 19.2 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|110668420|ref|YP_658231.1| - 0.0015 18.2 0.1 0.0021 17.8 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|110668420|ref|YP_658231.1| - 0.0039 16.7 0.0 0.0046 16.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin AhpC-TSA PF00578.16 gi|110668420|ref|YP_658231.1| - 0.043 13.4 0.0 0.047 13.3 0.0 1.2 1 0 0 1 1 1 0 AhpC/TSA family Redoxin PF08534.5 gi|110668420|ref|YP_658231.1| - 0.062 12.8 0.0 0.097 12.2 0.0 1.5 1 1 0 1 1 1 0 Redoxin Glutaredoxin PF00462.19 gi|110668420|ref|YP_658231.1| - 0.13 12.3 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Glutaredoxin Sigma70_r3 PF04539.11 gi|110668420|ref|YP_658231.1| - 0.16 11.8 1.6 2.4 8.0 0.1 2.3 2 0 0 2 2 2 0 Sigma-70 region 3 SBDS PF01172.13 gi|110668426|ref|YP_658237.1| - 3.5e-23 81.1 0.0 5.4e-23 80.5 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|110668426|ref|YP_658237.1| - 5.8e-18 64.7 0.0 8.5e-18 64.2 0.0 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain DUF3760 PF12586.3 gi|110668426|ref|YP_658237.1| - 0.03 14.1 0.1 0.065 13.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3760) YbjN PF10722.4 gi|110668426|ref|YP_658237.1| - 0.071 13.1 1.7 1 9.3 0.1 2.4 2 0 0 2 2 2 0 Putative bacterial sensory transduction regulator YIF1 PF03878.10 gi|110668427|ref|YP_658238.1| - 0.1 11.7 0.3 0.33 10.0 0.1 1.7 1 1 1 2 2 2 0 YIF1 Shisa PF13908.1 gi|110668428|ref|YP_658239.1| - 0.0016 18.6 6.4 0.0019 18.3 4.5 1.0 1 0 0 1 1 1 1 Wnt and FGF inhibitory regulator FAP PF07174.6 gi|110668428|ref|YP_658239.1| - 0.88 8.8 19.6 0.98 8.6 13.6 1.1 1 0 0 1 1 1 0 Fibronectin-attachment protein (FAP) Mucin PF01456.12 gi|110668428|ref|YP_658239.1| - 5 6.8 31.9 6 6.6 22.1 1.2 1 0 0 1 1 1 0 Mucin-like glycoprotein DUF4013 PF13197.1 gi|110668429|ref|YP_658240.1| - 0.071 12.4 52.4 0.0082 15.4 17.9 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF4013) MBOAT_2 PF13813.1 gi|110668429|ref|YP_658240.1| - 0.1 12.7 0.6 19 5.4 0.1 2.6 2 0 0 2 2 2 0 Membrane bound O-acyl transferase family MFS_1 PF07690.11 gi|110668430|ref|YP_658241.1| - 7e-51 172.9 54.0 2.6e-26 92.2 18.0 2.1 2 0 0 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|110668430|ref|YP_658241.1| - 1.2e-08 33.8 20.8 1.6e-08 33.3 13.8 1.5 1 1 0 1 1 1 1 MFS/sugar transport protein MFS_3 PF05977.8 gi|110668430|ref|YP_658241.1| - 6.2e-07 27.9 17.8 0.0002 19.6 5.4 2.4 2 1 0 2 2 2 2 Transmembrane secretion effector OATP PF03137.15 gi|110668430|ref|YP_658241.1| - 2 6.3 14.1 2.9 5.8 1.0 2.3 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family Acetyltransf_1 PF00583.19 gi|110668431|ref|YP_658242.1| - 4.8e-13 48.9 0.3 1.9e-12 47.0 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|110668431|ref|YP_658242.1| - 1.6e-08 34.1 0.2 6.9e-08 32.1 0.0 2.0 2 1 0 2 2 2 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|110668431|ref|YP_658242.1| - 2.9e-07 30.5 0.0 6.4e-07 29.4 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|110668431|ref|YP_658242.1| - 6.5e-07 29.4 0.1 1.4e-06 28.4 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|110668431|ref|YP_658242.1| - 6.7e-07 29.3 0.1 8.9e-07 28.9 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|110668431|ref|YP_658242.1| - 3.2e-06 27.3 0.0 4.5e-06 26.8 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|110668431|ref|YP_658242.1| - 0.00091 19.2 0.0 0.0015 18.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|110668431|ref|YP_658242.1| - 0.0017 18.1 0.1 0.0038 17.0 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|110668431|ref|YP_658242.1| - 0.011 15.5 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|110668431|ref|YP_658242.1| - 0.021 14.5 0.1 0.047 13.4 0.0 1.5 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase CDP-OH_P_transf PF01066.16 gi|110668432|ref|YP_658243.1| - 2e-16 60.1 3.7 2e-16 60.1 2.5 2.3 1 1 1 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF4079 PF13301.1 gi|110668432|ref|YP_658243.1| - 0.3 11.0 5.4 1.7 8.6 3.5 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4079) SNARE_assoc PF09335.6 gi|110668433|ref|YP_658244.1| - 5.2e-25 88.0 3.2 5.2e-25 88.0 2.2 1.8 2 0 0 2 2 2 1 SNARE associated Golgi protein DUF4029 PF13221.1 gi|110668433|ref|YP_658244.1| - 1.9 8.9 7.3 3.5 8.0 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF4029) TBP PF00352.16 gi|110668436|ref|YP_658247.1| - 4.1e-64 211.9 0.0 4.3e-31 106.1 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|110668436|ref|YP_658247.1| - 4.8e-05 23.3 0.0 0.29 11.2 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) CENP-F_C_Rb_bdg PF10490.4 gi|110668436|ref|YP_658247.1| - 0.12 11.7 0.8 8.1 5.8 0.2 2.4 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 ResIII PF04851.10 gi|110668437|ref|YP_658248.1| - 4.1e-20 72.3 0.0 8.5e-20 71.3 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|110668437|ref|YP_658248.1| - 1.8e-15 56.5 0.0 2.8e-15 55.8 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|110668437|ref|YP_658248.1| - 9.8e-13 47.7 0.0 2.3e-12 46.5 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|110668437|ref|YP_658248.1| - 1.9e-08 34.0 0.0 3.6e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|110668437|ref|YP_658248.1| - 0.0014 18.7 1.7 0.017 15.2 0.3 3.1 3 1 0 3 3 3 1 AAA domain TrmB PF01978.14 gi|110668437|ref|YP_658248.1| - 0.0019 17.8 0.1 0.0062 16.2 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB AAA_19 PF13245.1 gi|110668437|ref|YP_658248.1| - 0.0031 17.2 0.0 0.0099 15.6 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain AAA_5 PF07728.9 gi|110668437|ref|YP_658248.1| - 0.0033 17.1 0.1 0.08 12.6 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) HTH_11 PF08279.7 gi|110668437|ref|YP_658248.1| - 0.0065 16.0 0.0 0.018 14.6 0.0 1.7 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|110668437|ref|YP_658248.1| - 0.023 14.3 0.1 0.083 12.6 0.0 2.0 2 0 0 2 2 2 0 MarR family MarR_2 PF12802.2 gi|110668437|ref|YP_658248.1| - 0.053 13.2 0.0 0.19 11.4 0.0 1.9 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.15 gi|110668437|ref|YP_658248.1| - 0.11 12.1 0.0 0.25 11.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family AAA PF00004.24 gi|110668437|ref|YP_658248.1| - 0.13 12.4 0.0 0.34 11.1 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HPP PF04982.8 gi|110668438|ref|YP_658249.1| - 5.4e-09 35.9 5.5 7.9e-09 35.3 3.8 1.3 1 0 0 1 1 1 1 HPP family PsbR PF04725.7 gi|110668438|ref|YP_658249.1| - 0.11 12.4 2.0 6.7 6.7 0.0 2.5 2 0 0 2 2 2 0 Photosystem II 10 kDa polypeptide PsbR ABC2_membrane_2 PF12679.2 gi|110668438|ref|YP_658249.1| - 0.32 9.8 7.3 0.54 9.0 5.1 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein PepSY_TM_2 PF13703.1 gi|110668438|ref|YP_658249.1| - 0.83 9.8 9.7 0.46 10.6 0.8 2.6 3 0 0 3 3 3 0 PepSY-associated TM helix PAS_4 PF08448.5 gi|110668439|ref|YP_658250.1| - 0.068 13.2 0.1 0.094 12.7 0.1 1.2 1 0 0 1 1 1 0 PAS fold zf-CHY PF05495.7 gi|110668439|ref|YP_658250.1| - 0.28 11.3 1.6 5.6 7.2 0.0 2.4 1 1 0 2 2 2 0 CHY zinc finger zinc_ribbon_5 PF13719.1 gi|110668439|ref|YP_658250.1| - 0.41 10.2 3.2 0.82 9.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|110668439|ref|YP_658250.1| - 0.43 10.5 3.4 1.3 9.0 0.1 2.7 3 0 0 3 3 3 0 Zinc ribbon domain zf-UBP PF02148.14 gi|110668439|ref|YP_658250.1| - 0.66 10.1 4.0 25 5.0 2.8 2.4 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein zinc_ribbon_4 PF13717.1 gi|110668439|ref|YP_658250.1| - 1.2 8.9 4.0 1.3 8.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain BtpA PF03437.10 gi|110668440|ref|YP_658251.1| - 7.5e-47 159.7 3.1 8.6e-47 159.5 2.2 1.0 1 0 0 1 1 1 1 BtpA family PEP_mutase PF13714.1 gi|110668440|ref|YP_658251.1| - 0.025 13.7 0.5 0.041 13.0 0.3 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase BtpA PF03437.10 gi|110668441|ref|YP_658252.1| - 0.0001 21.6 0.0 0.00013 21.3 0.0 1.1 1 0 0 1 1 1 1 BtpA family LysE PF01810.13 gi|110668442|ref|YP_658253.1| - 4.3e-25 88.1 13.4 5.3e-25 87.8 9.3 1.1 1 0 0 1 1 1 1 LysE type translocator Cystatin PF00031.16 gi|110668443|ref|YP_658254.1| - 0.11 12.6 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Cystatin domain Arylsulfotran_2 PF14269.1 gi|110668444|ref|YP_658255.1| - 6.4e-14 51.7 0.2 9.3e-13 47.9 0.1 2.2 1 1 0 1 1 1 1 Arylsulfotransferase (ASST) Arylsulfotrans PF05935.6 gi|110668444|ref|YP_658255.1| - 3.5e-08 32.3 0.4 2.1e-07 29.8 0.1 2.3 2 1 0 2 2 2 1 Arylsulfotransferase (ASST) OrfB_Zn_ribbon PF07282.6 gi|110668445|ref|YP_658256.1| - 1e-21 76.3 3.2 2.7e-21 74.9 2.2 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|110668445|ref|YP_658256.1| - 4.7e-17 62.1 0.0 6.6e-17 61.6 0.0 1.2 1 0 0 1 1 1 1 Probable transposase Fer2 PF00111.22 gi|110668446|ref|YP_658257.1| - 3.2e-06 26.7 0.1 2.3e-05 24.0 0.1 2.3 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Polyketide_cyc PF03364.15 gi|110668447|ref|YP_658258.1| - 4.3e-07 29.9 0.0 7.8e-07 29.1 0.0 1.4 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.4 gi|110668447|ref|YP_658258.1| - 1e-06 28.9 0.2 1.1e-06 28.8 0.1 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Glucodextran_N PF09137.6 gi|110668448|ref|YP_658259.1| - 1.5e-36 126.0 3.0 2.8e-35 121.8 2.1 2.2 1 1 0 1 1 1 1 Glucodextranase, domain N Glyco_hydro_15 PF00723.16 gi|110668448|ref|YP_658259.1| - 7.5e-29 100.5 1.1 4.1e-21 75.0 0.0 4.2 3 1 1 4 4 4 3 Glycosyl hydrolases family 15 Prenyltrans_1 PF13243.1 gi|110668448|ref|YP_658259.1| - 0.048 13.6 7.0 1.7 8.6 0.3 4.1 2 2 2 4 4 4 0 Prenyltransferase-like Alpha-amylase PF00128.19 gi|110668449|ref|YP_658260.1| - 9.9e-50 169.7 0.1 1.1e-48 166.2 0.0 2.1 1 1 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.3 gi|110668449|ref|YP_658260.1| - 0.0011 19.0 0.0 0.0069 16.4 0.0 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF3459) Glyco_hydro_42C PF08533.5 gi|110668449|ref|YP_658260.1| - 0.003 17.0 0.3 0.28 10.7 0.0 2.9 3 0 0 3 3 3 1 Beta-galactosidase C-terminal domain Alpha-amylase_C PF02806.13 gi|110668449|ref|YP_658260.1| - 0.0063 16.6 0.1 0.018 15.1 0.0 1.8 1 0 0 1 1 1 1 Alpha amylase, C-terminal all-beta domain hDGE_amylase PF14701.1 gi|110668449|ref|YP_658260.1| - 0.013 14.4 0.0 0.021 13.7 0.0 1.2 1 0 0 1 1 1 0 glucanotransferase domain of human glycogen debranching enzyme Surp PF01805.15 gi|110668449|ref|YP_658260.1| - 0.23 11.1 0.6 6.8 6.4 0.2 2.5 2 0 0 2 2 2 0 Surp module Zn_Tnp_IS1595 PF12760.2 gi|110668450|ref|YP_658261.1| - 0.0047 16.7 3.5 0.034 13.9 2.9 1.9 1 1 1 2 2 2 1 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|110668450|ref|YP_658261.1| - 0.0064 15.6 2.5 0.53 9.5 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Trm112p PF03966.11 gi|110668450|ref|YP_658261.1| - 0.013 15.8 0.1 0.37 11.1 0.0 2.1 2 0 0 2 2 2 0 Trm112p-like protein OrfB_Zn_ribbon PF07282.6 gi|110668450|ref|YP_658261.1| - 0.02 14.5 0.5 0.04 13.5 0.3 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TFIIS_C PF01096.13 gi|110668450|ref|YP_658261.1| - 0.035 13.7 1.0 1.7 8.3 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-RING_3 PF14369.1 gi|110668450|ref|YP_658261.1| - 0.042 13.8 3.1 2 8.4 0.1 2.3 1 1 1 2 2 2 0 zinc-finger TF_Zn_Ribbon PF08271.7 gi|110668450|ref|YP_658261.1| - 0.053 12.8 1.6 0.35 10.2 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-nanos PF05741.8 gi|110668450|ref|YP_658261.1| - 0.079 12.9 1.9 7 6.7 0.1 2.1 1 1 1 2 2 2 0 Nanos RNA binding domain PhnA_Zn_Ribbon PF08274.7 gi|110668450|ref|YP_658261.1| - 0.14 11.9 2.2 0.9 9.3 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF2296 PF10058.4 gi|110668450|ref|YP_658261.1| - 0.14 11.8 0.6 3.4 7.5 0.1 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) UPF0547 PF10571.4 gi|110668450|ref|YP_658261.1| - 0.2 11.3 6.5 0.59 9.8 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C2H2_4 PF13894.1 gi|110668450|ref|YP_658261.1| - 0.28 11.5 1.2 6 7.4 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Zn_Tnp_IS1 PF03811.8 gi|110668450|ref|YP_658261.1| - 0.29 10.6 1.8 7.3 6.1 0.1 2.2 2 0 0 2 2 2 0 InsA N-terminal domain Zn-ribbon_8 PF09723.5 gi|110668450|ref|YP_658261.1| - 0.45 10.5 3.5 1.9 8.4 2.4 1.9 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|110668450|ref|YP_658261.1| - 0.51 9.9 4.1 9.7 5.8 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|110668450|ref|YP_658261.1| - 0.53 10.0 4.1 13 5.5 0.1 2.7 3 0 0 3 3 3 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|110668450|ref|YP_658261.1| - 1.4 8.6 4.2 0.93 9.2 0.2 2.1 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-HIT PF04438.11 gi|110668450|ref|YP_658261.1| - 2 8.1 4.7 2.2 8.0 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger PMT_2 PF13231.1 gi|110668451|ref|YP_658262.1| - 1.6e-09 37.8 17.0 1.6e-09 37.8 11.8 2.6 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_transf_22 PF03901.12 gi|110668451|ref|YP_658262.1| - 0.016 14.2 4.9 0.028 13.4 3.4 1.4 1 0 0 1 1 1 0 Alg9-like mannosyltransferase family ABC_tran PF00005.22 gi|110668452|ref|YP_658263.1| - 5.8e-34 117.3 0.0 1.1e-33 116.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110668452|ref|YP_658263.1| - 1.5e-06 28.3 0.2 0.0026 17.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|110668452|ref|YP_658263.1| - 2.2e-05 24.5 0.2 7.5e-05 22.7 0.0 1.7 1 1 1 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|110668452|ref|YP_658263.1| - 0.00013 22.1 0.0 0.00089 19.4 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|110668452|ref|YP_658263.1| - 0.00026 19.8 0.0 0.00039 19.2 0.0 1.4 1 1 0 1 1 1 1 Rad17 cell cycle checkpoint protein TOBE_2 PF08402.5 gi|110668452|ref|YP_658263.1| - 0.00029 20.7 0.0 0.005 16.8 0.0 2.7 2 0 0 2 2 2 1 TOBE domain AAA_22 PF13401.1 gi|110668452|ref|YP_658263.1| - 0.0025 17.9 0.4 0.012 15.7 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|110668452|ref|YP_658263.1| - 0.02 14.7 0.0 0.076 12.8 0.0 2.0 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|110668452|ref|YP_658263.1| - 0.024 14.5 0.4 0.14 12.0 0.3 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.17 gi|110668452|ref|YP_658263.1| - 0.032 13.1 0.1 0.048 12.5 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.1 gi|110668452|ref|YP_658263.1| - 0.038 13.3 0.2 0.1 12.0 0.1 1.8 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|110668452|ref|YP_658263.1| - 0.04 13.1 0.1 0.074 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|110668452|ref|YP_658263.1| - 0.081 12.6 0.1 0.19 11.5 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_15 PF13175.1 gi|110668452|ref|YP_658263.1| - 0.095 11.7 0.0 0.43 9.5 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_14 PF13173.1 gi|110668452|ref|YP_658263.1| - 0.16 11.8 0.1 0.35 10.7 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|110668452|ref|YP_658263.1| - 0.28 11.1 1.7 1.9 8.4 0.3 2.2 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|110668453|ref|YP_658264.1| - 2.6e-26 92.2 28.1 1.3e-15 57.3 5.1 3.9 3 1 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component SBP_bac_6 PF13343.1 gi|110668454|ref|YP_658265.1| - 5.3e-16 58.6 0.0 6.9e-16 58.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|110668454|ref|YP_658265.1| - 1.3e-11 44.7 0.0 2e-11 44.1 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|110668454|ref|YP_658265.1| - 7.2e-08 32.3 0.2 1.2e-07 31.5 0.1 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|110668454|ref|YP_658265.1| - 0.88 9.7 10.6 0.071 13.1 3.6 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|110668454|ref|YP_658265.1| - 1.4 8.1 6.8 0.48 9.6 2.2 2.0 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal RGP PF03214.8 gi|110668455|ref|YP_658266.1| - 2e-16 59.7 0.0 2.3e-16 59.5 0.0 1.2 1 0 0 1 1 1 1 Reversibly glycosylated polypeptide Cytochrom_C_2 PF01322.15 gi|110668455|ref|YP_658266.1| - 0.094 13.2 0.1 0.25 11.9 0.1 1.7 1 0 0 1 1 1 0 Cytochrome C' DUF393 PF04134.7 gi|110668456|ref|YP_658267.1| - 3.5e-09 37.7 0.2 5.3e-09 37.1 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function, DUF393 DUF123 PF01986.11 gi|110668457|ref|YP_658268.1| - 2.9e-25 88.2 0.0 3.8e-25 87.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 OrfB_IS605 PF01385.14 gi|110668458|ref|YP_658269.1| - 4.3e-47 160.4 0.0 5.8e-47 159.9 0.0 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|110668458|ref|YP_658269.1| - 8.9e-18 63.7 2.4 8.9e-18 63.7 1.6 2.4 2 0 0 2 2 2 1 Putative transposase DNA-binding domain C1_2 PF03107.11 gi|110668458|ref|YP_658269.1| - 0.025 14.6 3.8 0.06 13.4 2.6 1.6 1 0 0 1 1 1 0 C1 domain DUF3791 PF12668.2 gi|110668458|ref|YP_658269.1| - 0.085 12.4 0.0 0.21 11.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3791) C1_3 PF07649.7 gi|110668458|ref|YP_658269.1| - 0.19 11.8 2.6 0.61 10.1 1.8 1.9 1 0 0 1 1 1 0 C1-like domain RRN7 PF11781.3 gi|110668458|ref|YP_658269.1| - 3.7 7.1 8.6 0.71 9.4 3.3 1.9 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 FAD-oxidase_C PF02913.14 gi|110668459|ref|YP_658270.1| - 2.2e-64 217.1 0.1 3.7e-64 216.4 0.1 1.4 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|110668459|ref|YP_658270.1| - 1.4e-40 137.9 0.4 3.3e-40 136.7 0.3 1.7 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.1 gi|110668459|ref|YP_658270.1| - 3e-08 33.9 4.1 6.2e-08 32.8 2.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|110668459|ref|YP_658270.1| - 4e-08 33.1 4.8 7.5e-08 32.2 3.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|110668459|ref|YP_658270.1| - 4.2e-08 33.0 0.0 1.7e-06 27.9 0.0 2.6 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_18 PF13746.1 gi|110668459|ref|YP_658270.1| - 2.8e-05 24.4 1.7 9.6e-05 22.7 0.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|110668459|ref|YP_658270.1| - 0.0004 20.5 2.0 0.013 15.7 0.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|110668459|ref|YP_658270.1| - 0.00045 19.9 3.4 0.013 15.2 0.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|110668459|ref|YP_658270.1| - 0.0016 19.1 1.2 0.11 13.2 0.1 2.7 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|110668459|ref|YP_658270.1| - 0.002 18.4 4.1 0.097 13.0 3.1 2.5 1 1 1 2 2 2 1 4Fe-4S dicluster domain Cytokin-bind PF09265.5 gi|110668459|ref|YP_658270.1| - 0.0075 15.4 0.0 0.015 14.4 0.0 1.4 1 0 0 1 1 1 1 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_21 PF14697.1 gi|110668459|ref|YP_658270.1| - 0.067 13.0 4.1 0.099 12.5 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|110668459|ref|YP_658270.1| - 0.18 11.4 14.6 0.048 13.2 2.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|110668459|ref|YP_658270.1| - 0.81 10.3 6.8 0.16 12.5 0.2 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|110668459|ref|YP_658270.1| - 4.2 7.3 10.8 0.53 10.2 1.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|110668459|ref|YP_658270.1| - 7.7 6.6 11.7 0.4 10.6 1.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Lactate_perm PF02652.9 gi|110668460|ref|YP_658271.1| - 9.2e-99 331.2 52.5 1.8e-52 178.5 17.8 2.6 2 1 0 2 2 2 2 L-lactate permease DUF3267 PF11667.3 gi|110668462|ref|YP_658273.1| - 1e-05 25.6 2.3 1e-05 25.6 1.6 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF3267) Peptidase_M50B PF13398.1 gi|110668462|ref|YP_658273.1| - 0.021 14.1 0.1 0.021 14.1 0.1 2.4 1 1 1 2 2 2 0 Peptidase M50B-like Ret_tiss PF10044.4 gi|110668463|ref|YP_658274.1| - 0.023 15.2 0.0 0.039 14.4 0.0 1.6 1 1 0 1 1 1 0 Retinal tissue protein Gly-zipper_OmpA PF13436.1 gi|110668464|ref|YP_658275.1| - 0.0014 18.2 3.8 0.0014 18.2 2.6 1.5 2 0 0 2 2 2 1 Glycine-zipper containing OmpA-like membrane domain VIT1 PF01988.14 gi|110668464|ref|YP_658275.1| - 0.093 12.2 0.1 0.15 11.5 0.1 1.2 1 0 0 1 1 1 0 VIT family Gly-zipper_Omp PF13488.1 gi|110668464|ref|YP_658275.1| - 0.22 11.2 15.0 0.39 10.4 10.4 1.3 1 0 0 1 1 1 0 Glycine zipper Bacteriocin_IIc PF10439.4 gi|110668464|ref|YP_658275.1| - 1 9.5 10.4 1.7 8.7 7.2 1.4 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide Gly-zipper_YMGG PF13441.1 gi|110668464|ref|YP_658275.1| - 1.1 8.8 14.2 1.8 8.1 9.8 1.3 1 0 0 1 1 1 0 YMGG-like Gly-zipper Rick_17kDa_Anti PF05433.10 gi|110668464|ref|YP_658275.1| - 1.3 8.7 15.7 1.9 8.1 10.9 1.3 1 0 0 1 1 1 0 Glycine zipper 2TM domain DUF1183 PF06682.7 gi|110668464|ref|YP_658275.1| - 2.4 7.6 5.2 0.19 11.2 0.4 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1183) TraT PF05818.7 gi|110668464|ref|YP_658275.1| - 9.3 5.5 9.8 18 4.6 6.8 1.6 1 1 0 1 1 1 0 Enterobacterial TraT complement resistance protein PALP PF00291.20 gi|110668465|ref|YP_658276.1| - 1.9e-56 191.5 0.3 2.7e-56 191.0 0.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.21 gi|110668465|ref|YP_658276.1| - 0.017 14.6 0.2 0.055 13.0 0.1 1.9 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Thioredoxin PF00085.15 gi|110668466|ref|YP_658277.1| - 5.9e-06 25.8 0.0 8.1e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin AhpC-TSA PF00578.16 gi|110668466|ref|YP_658277.1| - 0.00031 20.4 0.0 0.00047 19.8 0.0 1.5 1 1 0 1 1 1 1 AhpC/TSA family Thioredoxin_9 PF14595.1 gi|110668466|ref|YP_658277.1| - 0.0038 16.7 0.1 0.017 14.6 0.0 1.9 1 1 1 2 2 2 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|110668466|ref|YP_658277.1| - 0.01 15.9 0.0 0.071 13.2 0.0 2.1 1 1 0 1 1 1 0 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|110668466|ref|YP_658277.1| - 0.025 14.3 0.1 0.046 13.5 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin domain Redoxin PF08534.5 gi|110668466|ref|YP_658277.1| - 0.026 14.0 0.0 0.07 12.6 0.0 1.7 1 1 0 1 1 1 0 Redoxin Thioredoxin_2 PF13098.1 gi|110668466|ref|YP_658277.1| - 0.06 13.5 0.1 0.3 11.2 0.1 2.0 1 1 0 1 1 1 0 Thioredoxin-like domain DUF1923 PF09083.5 gi|110668466|ref|YP_658277.1| - 0.092 12.2 0.5 10 5.6 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1923) Prok-RING_1 PF14446.1 gi|110668467|ref|YP_658278.1| - 0.71 9.6 6.0 1 9.1 4.1 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Thioredox_DsbH PF03190.10 gi|110668468|ref|YP_658279.1| - 2e-72 242.2 0.0 3.2e-72 241.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|110668468|ref|YP_658279.1| - 1.7e-10 40.7 0.0 4.2e-10 39.5 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.6 gi|110668468|ref|YP_658279.1| - 0.00019 20.6 0.2 0.0084 15.1 0.1 2.4 2 0 0 2 2 2 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) C5-epim_C PF06662.8 gi|110668468|ref|YP_658279.1| - 0.0079 15.4 0.1 0.67 9.2 0.0 3.0 2 1 1 3 3 3 1 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_88 PF07470.8 gi|110668468|ref|YP_658279.1| - 0.019 14.0 0.2 0.19 10.7 0.0 2.3 1 1 0 2 2 2 0 Glycosyl Hydrolase Family 88 Thioredoxin_2 PF13098.1 gi|110668468|ref|YP_658279.1| - 0.022 14.9 0.0 0.056 13.6 0.0 1.6 1 0 0 1 1 1 0 Thioredoxin-like domain GARS_A PF01071.14 gi|110668469|ref|YP_658280.1| - 3.4e-52 176.8 0.0 4.7e-52 176.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|110668469|ref|YP_658280.1| - 5.3e-24 84.5 0.1 1.1e-23 83.5 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|110668469|ref|YP_658280.1| - 3.4e-20 72.0 1.4 1e-19 70.4 0.4 2.3 3 0 0 3 3 3 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|110668469|ref|YP_658280.1| - 5e-20 72.0 0.0 1.1e-19 70.8 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|110668469|ref|YP_658280.1| - 1.9e-11 43.3 0.0 1.2e-10 40.6 0.0 2.2 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|110668469|ref|YP_658280.1| - 1e-06 28.7 0.0 2.7e-06 27.3 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain Hexapep PF00132.19 gi|110668470|ref|YP_658281.1| - 5.6e-10 38.2 4.5 1.1e-07 31.0 0.1 3.1 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|110668470|ref|YP_658281.1| - 2.4e-09 36.6 1.1 7.8e-07 28.5 0.0 2.7 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase MS_channel PF00924.13 gi|110668471|ref|YP_658282.1| - 2.9e-15 56.1 2.4 2.9e-15 56.1 1.7 2.1 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|110668471|ref|YP_658282.1| - 3.1e-05 23.5 0.0 3.1e-05 23.5 0.0 3.3 4 0 0 4 4 4 2 Conserved TM helix DUF373 PF04123.8 gi|110668471|ref|YP_658282.1| - 3.9 6.3 16.7 5.5 5.8 11.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DisA_N PF02457.11 gi|110668472|ref|YP_658283.1| - 6.2e-25 86.7 0.0 9.7e-25 86.0 0.0 1.3 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding TFIIB PF00382.14 gi|110668473|ref|YP_658284.1| - 4.4e-05 23.2 0.3 6.8e-05 22.5 0.2 1.4 1 1 0 1 1 1 1 Transcription factor TFIIB repeat DUF4608 PF15381.1 gi|110668473|ref|YP_658284.1| - 0.017 15.2 0.1 0.024 14.7 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4608) CTP_transf_2 PF01467.21 gi|110668474|ref|YP_658285.1| - 6.2e-12 45.8 0.1 4.5e-10 39.8 0.1 2.1 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|110668474|ref|YP_658285.1| - 0.00021 20.9 0.0 0.011 15.3 0.0 2.2 2 0 0 2 2 2 2 FAD synthetase GCS2 PF04107.8 gi|110668475|ref|YP_658286.1| - 1.1e-72 244.6 0.4 1.2e-72 244.4 0.3 1.0 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Amidoligase_2 PF12224.3 gi|110668475|ref|YP_658286.1| - 0.018 14.6 0.7 0.32 10.5 0.2 2.7 2 1 0 2 2 2 0 Putative amidoligase enzyme Fibrillarin PF01269.12 gi|110668476|ref|YP_658287.1| - 2.4e-50 170.6 0.0 2.8e-50 170.3 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin Nop PF01798.13 gi|110668477|ref|YP_658288.1| - 1.2e-42 144.7 0.1 1.7e-42 144.2 0.1 1.2 1 0 0 1 1 1 1 Putative snoRNA binding domain MutS_III PF05192.13 gi|110668477|ref|YP_658288.1| - 0.013 15.2 0.1 0.016 14.9 0.0 1.3 1 1 0 1 1 1 0 MutS domain III Nnf1 PF03980.9 gi|110668477|ref|YP_658288.1| - 0.2 11.6 1.0 9.3 6.2 0.1 2.7 2 1 0 2 2 2 0 Nnf1 TFIIB PF00382.14 gi|110668479|ref|YP_658290.1| - 3.5e-42 142.0 0.6 1.5e-20 72.7 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|110668479|ref|YP_658290.1| - 8.9e-18 63.3 1.4 2e-17 62.2 1.0 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|110668479|ref|YP_658290.1| - 0.0089 15.3 1.8 0.063 12.6 0.0 2.9 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|110668479|ref|YP_658290.1| - 0.013 14.8 0.1 0.026 13.8 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|110668479|ref|YP_658290.1| - 0.026 14.1 0.1 0.06 13.0 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_AsnC-type PF13404.1 gi|110668479|ref|YP_658290.1| - 0.045 13.2 0.0 0.29 10.7 0.0 2.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|110668479|ref|YP_658290.1| - 0.057 13.1 1.3 0.12 12.0 0.2 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB zf-TFIIB PF13453.1 gi|110668479|ref|YP_658290.1| - 0.085 12.0 0.0 0.26 10.4 0.0 1.8 1 0 0 1 1 1 0 Transcription factor zinc-finger Rubredoxin PF00301.15 gi|110668479|ref|YP_658290.1| - 0.089 12.6 0.1 7.5 6.5 0.0 2.6 2 0 0 2 2 2 0 Rubredoxin DZR PF12773.2 gi|110668479|ref|YP_658290.1| - 0.092 12.5 0.7 0.17 11.7 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_L37ae PF01780.14 gi|110668479|ref|YP_658290.1| - 0.11 12.3 0.2 0.28 11.0 0.1 1.6 1 0 0 1 1 1 0 Ribosomal L37ae protein family Cyclin_C PF02984.14 gi|110668479|ref|YP_658290.1| - 0.11 12.3 0.0 1.8 8.5 0.0 2.3 2 0 0 2 2 2 0 Cyclin, C-terminal domain UreF PF01730.11 gi|110668479|ref|YP_658290.1| - 0.15 12.1 4.0 10 6.2 0.1 2.9 2 1 1 3 3 3 0 UreF A2L_zn_ribbon PF08792.5 gi|110668479|ref|YP_658290.1| - 0.2 11.1 0.6 0.37 10.3 0.4 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain eIF-5_eIF-2B PF01873.12 gi|110668480|ref|YP_658291.1| - 3.4e-06 26.7 0.3 3.5e-06 26.6 0.2 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 zf-ribbon_3 PF13248.1 gi|110668480|ref|YP_658291.1| - 0.11 11.6 0.5 0.22 10.7 0.1 1.6 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|110668480|ref|YP_658291.1| - 0.2 11.3 0.6 0.2 11.3 0.4 1.6 2 0 0 2 2 2 0 Nudix N-terminal Lar_restr_allev PF14354.1 gi|110668480|ref|YP_658291.1| - 0.29 11.4 1.5 0.36 11.1 1.0 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar eIF-5_eIF-2B PF01873.12 gi|110668481|ref|YP_658292.1| - 5.4e-15 55.1 0.0 6.2e-15 54.9 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 UPF0058 PF01893.11 gi|110668482|ref|YP_658293.1| - 5.2e-20 71.3 0.0 5.9e-20 71.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 DUF555 PF04475.7 gi|110668483|ref|YP_658294.1| - 8.9e-39 131.6 0.1 1.1e-38 131.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) OGG_N PF07934.7 gi|110668484|ref|YP_658295.1| - 7.1e-20 71.1 0.0 1.2e-19 70.3 0.0 1.4 1 0 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.20 gi|110668484|ref|YP_658295.1| - 1.2e-10 41.6 0.0 1.7e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein Glyco_hydro_77 PF02446.12 gi|110668485|ref|YP_658296.1| - 1.4e-118 396.6 0.2 2.8e-97 326.3 1.3 2.0 2 0 0 2 2 2 2 4-alpha-glucanotransferase tRNA-synt_2b PF00587.20 gi|110668486|ref|YP_658297.1| - 6.5e-40 136.5 0.0 1.2e-39 135.6 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|110668486|ref|YP_658297.1| - 1.8e-19 69.4 0.8 4.9e-19 68.0 0.1 2.1 3 0 0 3 3 3 1 Anticodon binding domain TGS PF02824.16 gi|110668486|ref|YP_658297.1| - 1.2e-12 47.4 0.2 2.8e-12 46.2 0.1 1.7 1 0 0 1 1 1 1 TGS domain tRNA_SAD PF07973.9 gi|110668486|ref|YP_658297.1| - 1.9e-11 43.6 0.0 3.6e-11 42.7 0.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain NAD_synthase PF02540.12 gi|110668487|ref|YP_658298.1| - 2.1e-64 216.7 0.0 3e-64 216.2 0.0 1.1 1 0 0 1 1 1 1 NAD synthase CN_hydrolase PF00795.17 gi|110668487|ref|YP_658298.1| - 1.3e-13 50.7 0.0 2.6e-13 49.7 0.0 1.5 2 0 0 2 2 2 1 Carbon-nitrogen hydrolase tRNA_Me_trans PF03054.11 gi|110668487|ref|YP_658298.1| - 4.5e-08 32.0 0.0 5e-06 25.3 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|110668487|ref|YP_658298.1| - 1.5e-06 27.9 0.0 2.4e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|110668487|ref|YP_658298.1| - 0.007 15.6 0.0 0.025 13.8 0.0 1.8 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC TrkA_N PF02254.13 gi|110668488|ref|YP_658299.1| - 1.4e-21 76.6 2.6 1.4e-21 76.6 1.8 2.2 2 0 0 2 2 2 1 TrkA-N domain DHH PF01368.15 gi|110668488|ref|YP_658299.1| - 1.3e-12 47.5 0.8 4.2e-12 45.9 0.2 2.0 2 0 0 2 2 2 1 DHH family NAD_binding_10 PF13460.1 gi|110668488|ref|YP_658299.1| - 1.5e-07 31.5 2.6 2.8e-07 30.7 1.2 1.8 1 1 0 1 1 1 1 NADH(P)-binding F420_oxidored PF03807.12 gi|110668488|ref|YP_658299.1| - 2.7e-07 30.9 2.7 3.7e-07 30.4 0.4 2.3 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|110668488|ref|YP_658299.1| - 2.1e-06 27.2 0.0 4.9e-06 26.0 0.0 1.7 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Saccharop_dh PF03435.13 gi|110668488|ref|YP_658299.1| - 5.5e-06 25.6 0.6 8.8e-06 24.9 0.4 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase DHHA1 PF02272.14 gi|110668488|ref|YP_658299.1| - 5.5e-06 25.9 0.0 3e-05 23.6 0.0 2.1 2 0 0 2 2 2 1 DHHA1 domain UDPG_MGDP_dh_N PF03721.9 gi|110668488|ref|YP_658299.1| - 3e-05 23.4 0.1 7.8e-05 22.1 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.1 gi|110668488|ref|YP_658299.1| - 5.8e-05 23.2 0.7 0.00019 21.6 0.5 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_2 PF03446.10 gi|110668488|ref|YP_658299.1| - 0.00011 22.1 0.0 0.0002 21.2 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|110668488|ref|YP_658299.1| - 0.0002 20.7 0.4 0.00039 19.8 0.3 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_Gly3P_dh_N PF01210.18 gi|110668488|ref|YP_658299.1| - 0.00038 20.2 0.0 0.00097 18.8 0.0 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ADH_zinc_N PF00107.21 gi|110668488|ref|YP_658299.1| - 0.0012 18.3 0.2 0.096 12.2 0.1 2.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase adh_short PF00106.20 gi|110668488|ref|YP_658299.1| - 0.0027 17.6 7.5 0.069 13.0 0.1 3.1 2 1 1 3 3 3 2 short chain dehydrogenase 3HCDH_N PF02737.13 gi|110668488|ref|YP_658299.1| - 0.0035 17.0 1.9 0.0035 17.0 0.2 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.19 gi|110668488|ref|YP_658299.1| - 0.0055 15.6 0.0 0.01 14.7 0.0 1.6 1 0 0 1 1 1 1 FAD dependent oxidoreductase ThiF PF00899.16 gi|110668488|ref|YP_658299.1| - 0.0064 16.3 4.5 0.0097 15.7 1.5 2.6 2 1 0 2 2 2 1 ThiF family XdhC_C PF13478.1 gi|110668488|ref|YP_658299.1| - 0.022 15.0 1.0 0.12 12.7 0.7 2.2 1 1 0 1 1 1 0 XdhC Rossmann domain 2-Hacid_dh_C PF02826.14 gi|110668488|ref|YP_658299.1| - 0.024 13.7 0.1 0.18 10.9 0.0 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|110668488|ref|YP_658299.1| - 0.057 13.4 0.0 0.14 12.2 0.0 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_C PF03720.10 gi|110668488|ref|YP_658299.1| - 0.1 12.7 5.0 1.1 9.4 0.7 2.7 1 1 2 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KR PF08659.5 gi|110668488|ref|YP_658299.1| - 0.14 11.8 2.7 0.28 10.8 0.7 2.2 1 1 2 3 3 3 0 KR domain PRC PF05239.11 gi|110668489|ref|YP_658300.1| - 2.5e-09 36.8 1.8 3.8e-09 36.2 1.2 1.3 1 0 0 1 1 1 1 PRC-barrel domain DUF3315 PF11776.3 gi|110668489|ref|YP_658300.1| - 0.059 12.8 0.5 0.11 11.9 0.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3315) AdoMet_Synthase PF01941.14 gi|110668491|ref|YP_658302.1| - 2.8e-177 589.1 8.1 3.2e-177 588.9 5.6 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.15 gi|110668491|ref|YP_658302.1| - 0.076 13.2 0.2 0.31 11.2 0.0 2.1 2 0 0 2 2 2 0 S-adenosylmethionine synthetase, N-terminal domain CYTH PF01928.16 gi|110668492|ref|YP_658303.1| - 4.3e-38 130.8 1.9 4.9e-38 130.6 1.3 1.0 1 0 0 1 1 1 1 CYTH domain CAP_assoc_N PF14504.1 gi|110668492|ref|YP_658303.1| - 0.048 13.3 0.1 0.097 12.4 0.0 1.7 2 0 0 2 2 2 0 CAP-associated N-terminal FKBP_C PF00254.23 gi|110668493|ref|YP_658304.1| - 2.1e-08 34.0 0.0 5.6e-08 32.6 0.0 1.7 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase CbiA PF01656.18 gi|110668494|ref|YP_658305.1| - 1.4e-19 70.3 0.0 2.1e-19 69.7 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.4 gi|110668494|ref|YP_658305.1| - 5.7e-05 22.9 0.3 0.0001 22.0 0.2 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_26 PF13500.1 gi|110668494|ref|YP_658305.1| - 0.00013 21.5 0.1 0.21 11.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_31 PF13614.1 gi|110668494|ref|YP_658305.1| - 0.0075 16.2 0.0 0.05 13.5 0.0 2.1 1 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|110668494|ref|YP_658305.1| - 0.07 12.2 0.0 0.15 11.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_25 PF13481.1 gi|110668494|ref|YP_658305.1| - 0.11 11.8 0.2 0.61 9.4 0.1 2.1 2 0 0 2 2 2 0 AAA domain Fer4_NifH PF00142.13 gi|110668494|ref|YP_658305.1| - 0.32 10.1 1.2 12 5.0 0.2 2.4 3 0 0 3 3 3 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|110668494|ref|YP_658305.1| - 2.8 6.9 4.1 2 7.3 1.4 1.7 2 0 0 2 2 2 0 Anion-transporting ATPase DUF964 PF06133.6 gi|110668495|ref|YP_658306.1| - 5.5e-22 77.8 6.8 6.3e-22 77.6 4.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF964) Hanta_nucleocap PF00846.13 gi|110668495|ref|YP_658306.1| - 0.0034 16.1 0.1 0.004 15.9 0.1 1.2 1 0 0 1 1 1 1 Hantavirus nucleocapsid protein DUF3080 PF11279.3 gi|110668495|ref|YP_658306.1| - 0.013 14.6 2.4 0.015 14.4 1.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3080) SH3BP5 PF05276.9 gi|110668495|ref|YP_658306.1| - 0.014 14.7 3.3 0.018 14.3 0.9 1.8 1 1 1 2 2 2 0 SH3 domain-binding protein 5 (SH3BP5) NPV_P10 PF05531.7 gi|110668495|ref|YP_658306.1| - 0.045 13.9 2.0 0.08 13.2 0.3 2.1 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF641 PF04859.7 gi|110668495|ref|YP_658306.1| - 0.061 13.0 2.8 0.084 12.6 2.0 1.1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) Mu-like_Pro PF10123.4 gi|110668495|ref|YP_658306.1| - 0.097 12.1 7.6 0.12 11.8 5.3 1.0 1 0 0 1 1 1 0 Mu-like prophage I protein MRP-S27 PF10037.4 gi|110668495|ref|YP_658306.1| - 0.099 11.5 2.0 0.11 11.3 1.4 1.1 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S27 Syntaxin_2 PF14523.1 gi|110668495|ref|YP_658306.1| - 0.14 12.2 1.0 0.28 11.2 0.7 1.7 1 1 0 1 1 1 0 Syntaxin-like protein Syntaxin-6_N PF09177.6 gi|110668495|ref|YP_658306.1| - 0.22 11.9 3.2 1.4 9.3 1.5 2.3 1 1 1 2 2 2 0 Syntaxin 6, N-terminal OmpH PF03938.9 gi|110668495|ref|YP_658306.1| - 0.63 9.9 8.1 0.85 9.5 5.6 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Nif11 PF07862.6 gi|110668495|ref|YP_658306.1| - 0.67 9.9 3.4 0.5 10.3 0.2 2.3 2 1 0 2 2 2 0 Nitrogen fixation protein of unknown function Diphthamide_syn PF01866.12 gi|110668497|ref|YP_658308.1| - 3.8e-93 312.0 0.0 4.5e-93 311.8 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Lactamase_B_2 PF12706.2 gi|110668498|ref|YP_658309.1| - 5e-19 68.5 3.0 6.3e-19 68.2 2.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|110668498|ref|YP_658309.1| - 6.1e-13 48.8 0.4 9.3e-13 48.1 0.3 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|110668498|ref|YP_658309.1| - 4.6e-05 23.1 12.9 0.0002 21.0 8.9 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily HisG PF01634.13 gi|110668499|ref|YP_658310.1| - 0.005 16.4 0.1 0.011 15.3 0.1 1.7 1 1 0 1 1 1 1 ATP phosphoribosyltransferase PhoU PF01895.14 gi|110668500|ref|YP_658311.1| - 2.2e-19 69.6 9.6 8.2e-15 55.0 3.1 2.5 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|110668500|ref|YP_658311.1| - 1.6e-07 30.9 0.0 3.4e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PhoU_div PF01865.11 gi|110668500|ref|YP_658311.1| - 0.014 14.6 1.6 0.023 13.8 1.1 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF47 Amidase PF01425.16 gi|110668500|ref|YP_658311.1| - 0.037 12.8 0.2 0.047 12.5 0.2 1.1 1 0 0 1 1 1 0 Amidase Phage_rep_org_N PF09681.5 gi|110668500|ref|YP_658311.1| - 0.042 13.4 0.0 0.1 12.1 0.0 1.6 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) PhoU PF01895.14 gi|110668501|ref|YP_658312.1| - 3.1e-06 27.5 0.1 0.0012 19.2 0.0 2.9 3 0 0 3 3 3 1 PhoU domain HTH_24 PF13412.1 gi|110668501|ref|YP_658312.1| - 0.00022 20.5 0.0 0.00044 19.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|110668501|ref|YP_658312.1| - 0.00026 20.6 0.0 0.00076 19.2 0.0 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|110668501|ref|YP_658312.1| - 0.0031 17.1 0.0 0.0096 15.5 0.0 1.8 1 0 0 1 1 1 1 MarR family Mnd1 PF03962.10 gi|110668501|ref|YP_658312.1| - 0.014 15.0 0.8 2.1 8.0 0.6 2.6 2 1 0 2 2 2 0 Mnd1 family CBM_X PF06204.6 gi|110668501|ref|YP_658312.1| - 0.016 14.6 0.0 0.043 13.2 0.0 1.7 1 0 0 1 1 1 0 Putative carbohydrate binding domain Rrf2 PF02082.15 gi|110668501|ref|YP_658312.1| - 0.022 14.8 0.0 0.065 13.3 0.0 1.9 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.5 gi|110668501|ref|YP_658312.1| - 0.048 13.2 0.0 1.4 8.5 0.0 2.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain KorB PF08535.5 gi|110668501|ref|YP_658312.1| - 0.061 13.4 0.4 0.21 11.7 0.1 2.1 2 0 0 2 2 2 0 KorB domain GntR PF00392.16 gi|110668501|ref|YP_658312.1| - 0.067 12.6 0.0 0.22 11.0 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_11 PF08279.7 gi|110668501|ref|YP_658312.1| - 0.09 12.4 0.0 3.2 7.4 0.0 2.9 2 0 0 2 2 2 0 HTH domain DMAP_binding PF06464.6 gi|110668501|ref|YP_658312.1| - 0.097 13.2 1.4 0.2 12.2 1.0 1.5 1 0 0 1 1 1 0 DMAP1-binding Domain DUF515 PF04415.7 gi|110668501|ref|YP_658312.1| - 0.37 8.9 5.3 0.54 8.4 3.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF515) Hexapep PF00132.19 gi|110668502|ref|YP_658313.1| - 5.7e-14 50.8 3.2 2.3e-11 42.6 3.5 2.8 2 1 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|110668502|ref|YP_658313.1| - 7e-10 38.2 1.8 1.2e-09 37.5 1.2 1.4 1 0 0 1 1 1 1 Hexapeptide repeat of succinyl-transferase ABC_tran PF00005.22 gi|110668504|ref|YP_658315.1| - 1.5e-31 109.5 0.3 2.2e-31 108.9 0.2 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110668504|ref|YP_658315.1| - 1.3e-08 35.1 0.0 4.2e-06 26.9 0.0 2.2 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|110668504|ref|YP_658315.1| - 9.5e-06 24.8 0.2 2.3e-05 23.6 0.2 1.7 1 1 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|110668504|ref|YP_658315.1| - 6.5e-05 22.1 0.0 0.19 10.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|110668504|ref|YP_658315.1| - 9.2e-05 21.7 0.5 0.0035 16.6 0.3 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|110668504|ref|YP_658315.1| - 0.00033 20.1 0.0 0.00072 19.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|110668504|ref|YP_658315.1| - 0.00039 20.8 0.3 0.01 16.1 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|110668504|ref|YP_658315.1| - 0.0019 18.2 1.6 0.0061 16.5 1.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|110668504|ref|YP_658315.1| - 0.0031 17.6 0.2 0.0067 16.5 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|110668504|ref|YP_658315.1| - 0.0045 16.5 0.5 0.018 14.6 0.3 1.9 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|110668504|ref|YP_658315.1| - 0.0057 16.5 1.1 0.097 12.5 0.8 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit G-alpha PF00503.15 gi|110668504|ref|YP_658315.1| - 0.017 13.8 0.0 0.019 13.6 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit Oxidored_FMN PF00724.15 gi|110668504|ref|YP_658315.1| - 0.018 14.0 0.0 0.027 13.4 0.0 1.2 1 0 0 1 1 1 0 NADH:flavin oxidoreductase / NADH oxidase family MMR_HSR1 PF01926.18 gi|110668504|ref|YP_658315.1| - 0.02 14.8 0.1 3.9 7.4 0.0 2.4 2 0 0 2 2 2 0 50S ribosome-binding GTPase Zeta_toxin PF06414.7 gi|110668504|ref|YP_658315.1| - 0.1 11.6 0.0 0.16 11.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Miro PF08477.8 gi|110668504|ref|YP_658315.1| - 0.13 12.7 0.4 0.71 10.3 0.0 2.2 2 1 0 2 2 2 0 Miro-like protein Phosphonate-bd PF12974.2 gi|110668505|ref|YP_658316.1| - 6.4e-37 127.2 0.0 9e-37 126.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.6 gi|110668505|ref|YP_658316.1| - 0.0028 17.2 0.0 0.0052 16.4 0.0 1.5 1 0 0 1 1 1 1 NMT1/THI5 like PhnG PF06754.7 gi|110668506|ref|YP_658317.1| - 1.7e-15 56.9 0.2 2e-15 56.6 0.1 1.0 1 0 0 1 1 1 1 Phosphonate metabolism protein PhnG PhnI PF05861.7 gi|110668506|ref|YP_658317.1| - 0.027 13.0 0.1 0.041 12.3 0.1 1.5 1 1 0 1 1 1 0 Bacterial phosphonate metabolism protein (PhnI) PhnH PF05845.7 gi|110668507|ref|YP_658318.1| - 1e-23 83.8 0.1 1.4e-23 83.4 0.1 1.1 1 0 0 1 1 1 1 Bacterial phosphonate metabolism protein (PhnH) PhnI PF05861.7 gi|110668508|ref|YP_658319.1| - 1.4e-136 454.7 0.0 1.7e-136 454.4 0.0 1.0 1 0 0 1 1 1 1 Bacterial phosphonate metabolism protein (PhnI) PhnJ PF06007.6 gi|110668509|ref|YP_658320.1| - 3.5e-134 445.8 0.0 4.4e-134 445.5 0.0 1.1 1 0 0 1 1 1 1 Phosphonate metabolism protein PhnJ ABC_tran PF00005.22 gi|110668510|ref|YP_658321.1| - 9.2e-27 94.0 0.0 1.3e-26 93.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110668510|ref|YP_658321.1| - 1.8e-13 51.0 0.0 9.1e-12 45.5 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|110668510|ref|YP_658321.1| - 1.2e-06 28.6 0.3 1.6e-05 25.0 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|110668510|ref|YP_658321.1| - 3.6e-06 26.5 0.6 1e-05 25.0 0.4 1.7 1 1 0 1 1 1 1 AAA domain oligo_HPY PF08352.7 gi|110668510|ref|YP_658321.1| - 9.4e-05 22.6 0.0 0.00029 21.1 0.0 1.8 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.14 gi|110668510|ref|YP_658321.1| - 0.0009 18.5 0.8 0.6 9.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|110668510|ref|YP_658321.1| - 0.0023 17.9 0.1 0.0046 16.9 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|110668510|ref|YP_658321.1| - 0.0037 16.7 0.1 0.088 12.2 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_15 PF13175.1 gi|110668510|ref|YP_658321.1| - 0.006 15.6 0.0 0.31 10.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|110668510|ref|YP_658321.1| - 0.0063 17.3 1.4 0.019 15.7 1.0 2.0 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|110668510|ref|YP_658321.1| - 0.0065 16.3 0.0 0.026 14.4 0.0 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Chitin_bind_4 PF00379.18 gi|110668510|ref|YP_658321.1| - 0.016 15.4 0.1 0.032 14.5 0.1 1.5 1 0 0 1 1 1 0 Insect cuticle protein AAA_18 PF13238.1 gi|110668510|ref|YP_658321.1| - 0.018 15.3 0.3 0.042 14.1 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|110668510|ref|YP_658321.1| - 0.021 14.3 0.1 0.049 13.1 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.24 gi|110668510|ref|YP_658321.1| - 0.026 14.7 0.0 6.3 7.0 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|110668510|ref|YP_658321.1| - 0.03 13.5 0.0 0.046 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|110668510|ref|YP_658321.1| - 0.033 13.2 0.2 0.59 9.1 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin Miro PF08477.8 gi|110668510|ref|YP_658321.1| - 0.034 14.6 0.0 0.092 13.2 0.0 1.7 2 0 0 2 2 1 0 Miro-like protein IstB_IS21 PF01695.12 gi|110668510|ref|YP_658321.1| - 0.035 13.5 0.2 2.8 7.3 0.0 2.3 2 1 0 2 2 2 0 IstB-like ATP binding protein AAA_33 PF13671.1 gi|110668510|ref|YP_658321.1| - 0.046 13.6 1.1 0.82 9.5 0.8 2.3 1 1 0 1 1 1 0 AAA domain Propep_M14 PF02244.11 gi|110668510|ref|YP_658321.1| - 0.05 13.2 0.1 0.087 12.5 0.1 1.3 1 0 0 1 1 1 0 Carboxypeptidase activation peptide MMR_HSR1 PF01926.18 gi|110668510|ref|YP_658321.1| - 0.063 13.2 0.1 0.27 11.1 0.1 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF87 PF01935.12 gi|110668510|ref|YP_658321.1| - 0.077 12.7 0.9 0.33 10.7 0.1 2.2 2 1 0 2 2 2 0 Domain of unknown function DUF87 ABC_tran PF00005.22 gi|110668511|ref|YP_658322.1| - 2.7e-28 98.9 0.0 9.1e-28 97.2 0.0 1.9 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|110668511|ref|YP_658322.1| - 6.7e-10 39.3 0.0 0.00054 20.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|110668511|ref|YP_658322.1| - 2.1e-06 27.1 0.0 0.0014 17.9 0.0 3.0 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|110668511|ref|YP_658322.1| - 1.8e-05 24.8 0.5 6.2e-05 23.0 0.4 1.9 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.1 gi|110668511|ref|YP_658322.1| - 5.9e-05 22.8 0.4 0.0022 17.8 0.1 3.5 3 1 0 3 3 3 1 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|110668511|ref|YP_658322.1| - 0.00016 21.2 0.0 0.00034 20.1 0.0 1.4 1 1 0 1 1 1 1 AAA-like domain DUF258 PF03193.11 gi|110668511|ref|YP_658322.1| - 0.00024 20.3 0.1 0.00041 19.5 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|110668511|ref|YP_658322.1| - 0.00083 19.2 0.0 0.0065 16.3 0.0 2.4 3 1 0 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|110668511|ref|YP_658322.1| - 0.0039 17.3 0.8 0.053 13.6 0.6 2.6 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|110668511|ref|YP_658322.1| - 0.0075 15.3 0.0 0.38 9.7 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain Gtr1_RagA PF04670.7 gi|110668511|ref|YP_658322.1| - 0.0076 15.4 0.0 0.013 14.6 0.0 1.4 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region AAA_30 PF13604.1 gi|110668511|ref|YP_658322.1| - 0.0078 15.8 0.1 0.53 9.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|110668511|ref|YP_658322.1| - 0.011 15.2 0.1 0.024 14.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|110668511|ref|YP_658322.1| - 0.014 15.2 0.0 0.067 13.0 0.0 2.0 1 1 1 2 2 2 0 AAA domain Miro PF08477.8 gi|110668511|ref|YP_658322.1| - 0.022 15.2 0.0 0.064 13.7 0.0 1.8 1 0 0 1 1 1 0 Miro-like protein AAA_23 PF13476.1 gi|110668511|ref|YP_658322.1| - 0.07 13.4 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|110668511|ref|YP_658322.1| - 0.093 12.6 0.0 0.27 11.2 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase Amidohydro_4 PF13147.1 gi|110668512|ref|YP_658323.1| - 1.8e-22 80.6 8.5 8.5e-22 78.4 5.9 1.9 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|110668512|ref|YP_658323.1| - 8.9e-12 44.6 0.2 8.9e-12 44.6 0.2 2.8 2 1 1 3 3 3 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|110668512|ref|YP_658323.1| - 3.6e-08 33.4 1.4 8.6e-07 28.9 1.0 2.5 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.6 gi|110668512|ref|YP_658323.1| - 2.7e-06 26.8 6.8 4.6e-06 26.1 0.8 2.6 1 1 0 2 2 2 1 Amidohydrolase family Urease_alpha PF00449.15 gi|110668512|ref|YP_658323.1| - 0.0098 16.0 2.1 0.2 11.7 0.5 2.3 2 0 0 2 2 2 1 Urease alpha-subunit, N-terminal domain ArdA PF07275.6 gi|110668512|ref|YP_658323.1| - 0.075 13.2 0.1 0.14 12.4 0.1 1.4 1 0 0 1 1 1 0 Antirestriction protein (ArdA) AP_endonuc_2 PF01261.19 gi|110668513|ref|YP_658324.1| - 7.6e-27 93.9 0.5 9.3e-27 93.6 0.3 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel HTH_20 PF12840.2 gi|110668514|ref|YP_658325.1| - 2.4e-11 43.2 0.1 1.9e-10 40.3 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|110668514|ref|YP_658325.1| - 6.3e-11 41.7 0.1 1.3e-10 40.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|110668514|ref|YP_658325.1| - 2.4e-05 23.9 0.0 4.2e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|110668514|ref|YP_658325.1| - 0.0019 17.8 0.0 0.0046 16.6 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|110668514|ref|YP_658325.1| - 0.0039 17.1 0.0 0.0077 16.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.16 gi|110668514|ref|YP_658325.1| - 0.0044 16.4 0.0 0.0066 15.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|110668514|ref|YP_658325.1| - 0.0057 16.9 0.0 0.018 15.3 0.0 1.8 2 1 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|110668514|ref|YP_658325.1| - 0.022 14.3 0.1 0.052 13.2 0.0 1.8 1 1 0 1 1 1 0 MarR family HTH_11 PF08279.7 gi|110668514|ref|YP_658325.1| - 0.032 13.8 0.0 0.057 13.0 0.0 1.5 1 0 0 1 1 1 0 HTH domain PaaX PF07848.7 gi|110668514|ref|YP_658325.1| - 0.037 14.0 0.0 0.061 13.3 0.0 1.4 1 0 0 1 1 1 0 PaaX-like protein DUF4423 PF14394.1 gi|110668514|ref|YP_658325.1| - 0.065 12.7 0.0 0.11 12.0 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) RP-C PF03428.8 gi|110668514|ref|YP_658325.1| - 0.073 12.5 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain DUF2513 PF10711.4 gi|110668514|ref|YP_658325.1| - 0.11 12.5 0.0 0.24 11.5 0.0 1.6 1 1 1 2 2 2 0 Hypothetical protein (DUF2513) DUF2250 PF10007.4 gi|110668514|ref|YP_658325.1| - 0.13 12.2 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) PAX PF00292.13 gi|110668514|ref|YP_658325.1| - 0.14 11.8 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 'Paired box' domain ArsD PF06953.6 gi|110668515|ref|YP_658326.1| - 4.2e-28 97.9 0.1 4.5e-28 97.8 0.1 1.0 1 0 0 1 1 1 1 Arsenical resistance operon trans-acting repressor ArsD ArsA_ATPase PF02374.10 gi|110668516|ref|YP_658327.1| - 2.1e-169 562.3 0.0 3.2e-93 312.1 0.0 3.9 2 2 0 2 2 2 2 Anion-transporting ATPase CbiA PF01656.18 gi|110668516|ref|YP_658327.1| - 8.7e-30 103.5 0.0 6.7e-14 51.7 0.0 2.3 2 0 0 2 2 2 2 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|110668516|ref|YP_658327.1| - 1.6e-14 54.1 0.2 7e-06 26.0 0.0 2.7 2 2 0 2 2 2 2 AAA domain Fer4_NifH PF00142.13 gi|110668516|ref|YP_658327.1| - 4.2e-09 35.9 0.0 0.002 17.3 0.0 2.7 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_10 PF12846.2 gi|110668516|ref|YP_658327.1| - 9.1e-08 31.8 0.2 0.011 15.1 0.1 2.7 2 1 0 2 2 2 2 AAA-like domain SRP54 PF00448.17 gi|110668516|ref|YP_658327.1| - 1.3e-07 31.2 6.7 0.46 9.8 0.7 4.3 3 1 0 4 4 4 3 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|110668516|ref|YP_658327.1| - 1.7e-07 30.8 2.6 0.014 14.7 0.3 3.4 2 2 0 2 2 2 2 AAA domain NB-ARC PF00931.17 gi|110668516|ref|YP_658327.1| - 1e-06 27.8 0.0 0.0096 14.8 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain APS_kinase PF01583.15 gi|110668516|ref|YP_658327.1| - 2.3e-06 27.3 0.2 0.011 15.3 0.0 2.7 3 0 0 3 3 2 2 Adenylylsulphate kinase ArgK PF03308.11 gi|110668516|ref|YP_658327.1| - 2.6e-06 26.4 0.2 0.00076 18.3 0.0 3.1 3 0 0 3 3 3 1 ArgK protein MobB PF03205.9 gi|110668516|ref|YP_658327.1| - 9.8e-06 25.3 0.5 0.055 13.1 0.3 2.8 2 1 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|110668516|ref|YP_658327.1| - 1.1e-05 25.4 0.0 0.018 15.0 0.0 2.6 2 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|110668516|ref|YP_658327.1| - 2.3e-05 23.8 0.1 0.23 11.0 0.0 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain PhoH PF02562.11 gi|110668516|ref|YP_658327.1| - 2.6e-05 23.5 0.2 0.065 12.4 0.0 2.7 2 1 0 2 2 2 2 PhoH-like protein IstB_IS21 PF01695.12 gi|110668516|ref|YP_658327.1| - 3.1e-05 23.4 0.0 0.099 12.0 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein NTPase_1 PF03266.10 gi|110668516|ref|YP_658327.1| - 0.00027 20.7 0.7 0.12 12.0 0.2 3.0 3 1 0 3 3 3 1 NTPase Helicase_RecD PF05127.9 gi|110668516|ref|YP_658327.1| - 0.00027 20.6 0.0 0.18 11.3 0.1 2.3 2 0 0 2 2 2 1 Helicase AAA_17 PF13207.1 gi|110668516|ref|YP_658327.1| - 0.00029 21.6 0.4 0.5 11.1 0.0 3.3 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|110668516|ref|YP_658327.1| - 0.00044 20.3 0.1 0.75 9.9 0.0 2.8 2 1 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|110668516|ref|YP_658327.1| - 0.00045 19.4 0.0 0.23 10.6 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|110668516|ref|YP_658327.1| - 0.00061 20.0 0.2 0.65 10.3 0.1 3.3 3 1 0 3 3 2 1 AAA domain RNA_helicase PF00910.17 gi|110668516|ref|YP_658327.1| - 0.00061 19.9 0.1 1.5 9.0 0.1 2.8 2 1 0 2 2 2 2 RNA helicase MipZ PF09140.6 gi|110668516|ref|YP_658327.1| - 0.0012 18.0 8.2 0.66 9.0 0.2 3.8 2 2 1 3 3 3 2 ATPase MipZ ATP_bind_1 PF03029.12 gi|110668516|ref|YP_658327.1| - 0.0014 18.2 2.1 0.22 11.0 0.1 2.6 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_5 PF07728.9 gi|110668516|ref|YP_658327.1| - 0.002 17.8 0.3 1.3 8.7 0.0 2.8 3 1 0 3 3 2 1 AAA domain (dynein-related subfamily) ABC_tran PF00005.22 gi|110668516|ref|YP_658327.1| - 0.0028 17.9 0.0 0.54 10.5 0.0 2.5 2 0 0 2 2 2 1 ABC transporter AAA_30 PF13604.1 gi|110668516|ref|YP_658327.1| - 0.0032 17.0 3.6 1.6 8.3 1.2 3.5 3 1 0 3 3 3 1 AAA domain Thymidylate_kin PF02223.12 gi|110668516|ref|YP_658327.1| - 0.0032 16.8 0.7 0.6 9.4 0.1 2.7 2 1 1 3 3 3 1 Thymidylate kinase PIF1 PF05970.9 gi|110668516|ref|YP_658327.1| - 0.0036 16.3 0.0 0.81 8.5 0.0 2.2 2 0 0 2 2 2 1 PIF1-like helicase AAA_33 PF13671.1 gi|110668516|ref|YP_658327.1| - 0.01 15.6 0.0 1.5 8.7 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|110668516|ref|YP_658327.1| - 0.015 15.5 0.1 2.2 8.4 0.0 2.7 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.5 gi|110668516|ref|YP_658327.1| - 0.019 14.1 0.5 0.74 8.9 0.0 2.9 2 1 1 3 3 3 0 Chromatin associated protein KTI12 T2SE PF00437.15 gi|110668516|ref|YP_658327.1| - 0.025 13.4 0.4 2.1 7.1 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein adh_short_C2 PF13561.1 gi|110668516|ref|YP_658327.1| - 0.048 13.4 0.4 0.23 11.2 0.2 2.1 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase VirC1 PF07015.6 gi|110668516|ref|YP_658327.1| - 0.11 11.6 1.9 9.6 5.2 0.0 2.9 3 0 0 3 3 3 0 VirC1 protein YhjQ PF06564.7 gi|110668516|ref|YP_658327.1| - 0.11 11.8 0.0 2.5 7.4 0.0 2.3 2 0 0 2 2 2 0 YhjQ protein DUF3535 PF12054.3 gi|110668516|ref|YP_658327.1| - 0.14 10.7 0.2 0.22 10.1 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3535) NACHT PF05729.7 gi|110668516|ref|YP_658327.1| - 0.15 11.6 0.1 5.3 6.6 0.0 2.4 2 0 0 2 2 2 0 NACHT domain DUF2075 PF09848.4 gi|110668516|ref|YP_658327.1| - 3.7 6.4 4.9 3.3 6.5 0.5 2.8 2 2 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) DUF964 PF06133.6 gi|110668517|ref|YP_658328.1| - 2.5e-13 49.9 13.4 3.8e-13 49.3 9.3 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF964) KTI12 PF08433.5 gi|110668517|ref|YP_658328.1| - 0.00078 18.7 3.3 0.00088 18.5 2.3 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 CsgE PF10627.4 gi|110668517|ref|YP_658328.1| - 0.021 14.6 2.8 0.27 11.0 0.1 2.1 1 1 1 2 2 2 0 Curli assembly protein CsgE DUF469 PF04320.9 gi|110668517|ref|YP_658328.1| - 0.042 14.6 1.8 6.3 7.6 0.1 2.2 2 0 0 2 2 2 0 Protein with unknown function (DUF469) DUF3196 PF11428.3 gi|110668517|ref|YP_658328.1| - 0.053 12.8 5.1 0.063 12.5 3.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3196) Toxin_43 PF15604.1 gi|110668517|ref|YP_658328.1| - 0.11 12.5 5.8 0.43 10.6 0.2 2.1 1 1 1 2 2 2 0 Putative toxin 43 DUF4062 PF13271.1 gi|110668517|ref|YP_658328.1| - 0.19 11.7 1.0 0.36 10.8 0.2 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4062) DUF2115 PF09888.4 gi|110668517|ref|YP_658328.1| - 0.57 10.2 3.5 0.86 9.6 2.4 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2115) EMP24_GP25L PF01105.19 gi|110668517|ref|YP_658328.1| - 0.63 9.7 6.3 3.9 7.1 1.6 2.0 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD RGS PF00615.14 gi|110668517|ref|YP_658328.1| - 0.9 9.6 6.2 2.9 8.0 4.3 1.8 1 1 0 1 1 1 0 Regulator of G protein signaling domain OmpH PF03938.9 gi|110668517|ref|YP_658328.1| - 2.5 8.0 11.6 3.2 7.6 8.1 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DnaI_N PF07319.6 gi|110668517|ref|YP_658328.1| - 3.2 8.0 7.5 1.1 9.5 1.6 2.1 1 1 1 2 2 2 0 Primosomal protein DnaI N-terminus RNA_polI_A14 PF08203.6 gi|110668517|ref|YP_658328.1| - 3.7 7.8 6.0 3.4 7.9 0.8 2.4 1 1 1 2 2 2 0 Yeast RNA polymerase I subunit RPA14 DUF318 PF03773.8 gi|110668518|ref|YP_658329.1| - 5e-61 206.3 14.1 5.9e-61 206.1 9.7 1.0 1 0 0 1 1 1 1 Predicted permease DUF3678 PF12435.3 gi|110668518|ref|YP_658329.1| - 9.4 5.8 8.2 12 5.5 1.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3678) HTH_20 PF12840.2 gi|110668519|ref|YP_658330.1| - 7.7e-15 54.4 0.4 1.3e-14 53.6 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|110668519|ref|YP_658330.1| - 7.6e-12 44.7 0.1 1.4e-11 43.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|110668519|ref|YP_658330.1| - 0.00034 20.2 0.0 0.00069 19.2 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|110668519|ref|YP_658330.1| - 0.0046 17.2 0.2 0.13 12.5 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain DUF4123 PF13503.1 gi|110668519|ref|YP_658330.1| - 0.0056 16.6 0.0 0.0083 16.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4123) HTH_24 PF13412.1 gi|110668519|ref|YP_658330.1| - 0.051 12.9 0.1 0.21 10.9 0.0 2.2 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.11 gi|110668519|ref|YP_658330.1| - 0.067 13.2 0.1 0.19 11.8 0.0 1.7 1 1 0 2 2 2 0 Penicillinase repressor DUF742 PF05331.6 gi|110668519|ref|YP_658330.1| - 0.07 12.7 0.1 0.085 12.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF742) TFIIE_alpha PF02002.12 gi|110668519|ref|YP_658330.1| - 0.074 12.5 0.2 0.54 9.7 0.0 2.0 1 1 1 2 2 2 0 TFIIE alpha subunit NOC3p PF07540.6 gi|110668519|ref|YP_658330.1| - 0.1 12.8 0.0 0.25 11.6 0.0 1.6 1 1 0 1 1 1 0 Nucleolar complex-associated protein Gluconate_2-dh3 PF13618.1 gi|110668519|ref|YP_658330.1| - 0.12 12.5 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 Gluconate 2-dehydrogenase subunit 3 MgtE_N PF03448.12 gi|110668519|ref|YP_658330.1| - 0.18 12.1 0.9 1.7 8.9 0.4 2.4 1 1 0 1 1 1 0 MgtE intracellular N domain DDE_Tnp_1 PF01609.16 gi|110668520|ref|YP_658331.1| - 6.7e-06 25.8 1.3 8.1e-06 25.5 0.9 1.1 1 0 0 1 1 1 1 Transposase DDE domain Phage_integrase PF00589.17 gi|110668521|ref|YP_658332.1| - 2e-14 53.6 0.0 4.3e-14 52.5 0.0 1.6 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|110668521|ref|YP_658332.1| - 9.8e-07 29.0 1.0 4.7e-06 26.8 0.7 2.0 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|110668521|ref|YP_658332.1| - 2.6e-06 27.4 4.5 0.00079 19.5 2.6 3.3 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Rrf2 PF02082.15 gi|110668522|ref|YP_658333.1| - 0.0044 17.1 0.0 0.012 15.6 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator ELL PF10390.4 gi|110668522|ref|YP_658333.1| - 0.029 13.5 0.2 0.035 13.3 0.1 1.1 1 0 0 1 1 1 0 RNA polymerase II elongation factor ELL FtsH_ext PF06480.10 gi|110668522|ref|YP_658333.1| - 0.032 14.3 1.4 0.048 13.8 1.0 1.5 1 1 0 1 1 1 0 FtsH Extracellular PhageMin_Tail PF10145.4 gi|110668522|ref|YP_658333.1| - 0.04 13.5 0.9 0.047 13.3 0.6 1.3 1 1 0 1 1 1 0 Phage-related minor tail protein Prismane PF03063.15 gi|110668522|ref|YP_658333.1| - 0.063 11.6 1.4 0.23 9.8 0.9 1.7 1 1 0 1 1 1 0 Prismane/CO dehydrogenase family DUF2422 PF10337.4 gi|110668522|ref|YP_658333.1| - 0.2 10.3 1.4 0.25 10.0 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2422) DUF4131 PF13567.1 gi|110668523|ref|YP_658334.1| - 0.31 10.4 10.1 0.27 10.6 2.7 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) TAT_signal PF10518.4 gi|110668524|ref|YP_658335.1| - 0.0075 16.1 0.3 0.026 14.5 0.2 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Orbi_VP6 PF01516.11 gi|110668524|ref|YP_658335.1| - 0.058 12.4 0.3 0.11 11.5 0.2 1.3 1 0 0 1 1 1 0 Orbivirus helicase VP6 UB2H PF14814.1 gi|110668524|ref|YP_658335.1| - 0.13 12.0 0.1 0.3 10.8 0.1 1.5 1 0 0 1 1 1 0 Bifunctional transglycosylase second domain HTH_24 PF13412.1 gi|110668525|ref|YP_658336.1| - 4.6e-15 54.7 0.3 6.6e-15 54.2 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|110668525|ref|YP_658336.1| - 1.1e-12 47.2 2.5 2.1e-12 46.3 1.8 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|110668525|ref|YP_658336.1| - 2e-08 33.9 0.0 3.5e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|110668525|ref|YP_658336.1| - 3.5e-07 29.7 0.0 7.1e-07 28.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|110668525|ref|YP_658336.1| - 4.9e-06 26.0 0.0 9e-06 25.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|110668525|ref|YP_658336.1| - 6.9e-06 25.6 0.1 1.1e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.15 gi|110668525|ref|YP_658336.1| - 0.00011 22.2 0.0 0.00023 21.2 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator Sigma70_r4_2 PF08281.7 gi|110668525|ref|YP_658336.1| - 0.00014 21.2 0.1 0.00025 20.4 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_27 PF13463.1 gi|110668525|ref|YP_658336.1| - 0.00015 22.0 0.1 0.00038 20.7 0.0 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|110668525|ref|YP_658336.1| - 0.00024 20.5 0.2 0.0052 16.2 0.0 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.15 gi|110668525|ref|YP_658336.1| - 0.00077 19.0 0.0 0.0013 18.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|110668525|ref|YP_658336.1| - 0.0013 18.6 0.0 0.0022 17.8 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.1 gi|110668525|ref|YP_658336.1| - 0.0013 18.8 0.0 0.0019 18.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_CodY PF08222.6 gi|110668525|ref|YP_658336.1| - 0.0016 17.6 0.3 0.0031 16.7 0.2 1.4 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|110668525|ref|YP_658336.1| - 0.0022 17.1 0.3 0.0046 16.0 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 MarR PF01047.17 gi|110668525|ref|YP_658336.1| - 0.0032 17.1 0.0 0.0052 16.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.1 gi|110668525|ref|YP_658336.1| - 0.0045 16.5 0.3 0.0083 15.6 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|110668525|ref|YP_658336.1| - 0.0055 16.3 0.0 0.01 15.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|110668525|ref|YP_658336.1| - 0.0083 15.7 0.1 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|110668525|ref|YP_658336.1| - 0.014 15.3 0.0 0.027 14.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|110668525|ref|YP_658336.1| - 0.024 14.0 0.0 0.043 13.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_34 PF13601.1 gi|110668525|ref|YP_658336.1| - 0.024 14.6 0.0 0.042 13.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|110668525|ref|YP_658336.1| - 0.048 13.4 0.1 0.092 12.5 0.1 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain GntR PF00392.16 gi|110668525|ref|YP_658336.1| - 0.1 12.0 0.0 0.25 10.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family RepL PF05732.6 gi|110668525|ref|YP_658336.1| - 0.1 11.7 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_Mga PF08280.6 gi|110668525|ref|YP_658336.1| - 0.11 12.3 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain RP-C PF03428.8 gi|110668525|ref|YP_658336.1| - 0.11 11.9 0.1 0.27 10.6 0.0 1.6 1 1 1 2 2 2 0 Replication protein C N-terminal domain HTH_1 PF00126.22 gi|110668525|ref|YP_658336.1| - 0.11 12.2 0.2 0.2 11.3 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF4423 PF14394.1 gi|110668525|ref|YP_658336.1| - 0.12 11.9 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_10 PF04967.7 gi|110668525|ref|YP_658336.1| - 0.12 11.9 0.1 0.22 11.1 0.1 1.3 1 0 0 1 1 1 0 HTH DNA binding domain HTH_29 PF13551.1 gi|110668525|ref|YP_658336.1| - 0.13 12.4 0.0 0.19 11.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix Phage_pRha PF09669.5 gi|110668525|ref|YP_658336.1| - 0.15 12.4 0.0 0.21 11.9 0.0 1.2 1 0 0 1 1 1 0 Phage regulatory protein Rha (Phage_pRha) Amidohydro_1 PF01979.15 gi|110668526|ref|YP_658337.1| - 1.2e-22 81.0 3.1 5.1e-21 75.6 2.1 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|110668526|ref|YP_658337.1| - 1.3e-07 31.9 10.5 8.5e-07 29.2 7.3 1.9 1 1 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|110668526|ref|YP_658337.1| - 2.7e-07 29.8 0.1 3.9e-07 29.3 0.1 1.1 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_5 PF13594.1 gi|110668526|ref|YP_658337.1| - 3.6e-05 23.4 0.0 8.2e-05 22.3 0.0 1.7 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|110668526|ref|YP_658337.1| - 0.081 12.1 9.6 0.17 11.0 2.7 2.7 1 1 1 2 2 2 0 Amidohydrolase family Oxidored_q1 PF00361.15 gi|110668527|ref|YP_658338.1| - 6.2e-33 114.2 18.9 6.2e-33 114.2 13.1 2.9 2 1 1 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|110668527|ref|YP_658338.1| - 2.1e-06 27.2 0.0 2.1e-06 27.2 0.0 3.1 2 1 1 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF2309 PF10070.4 gi|110668528|ref|YP_658339.1| - 1.7e-258 859.8 0.0 2e-258 859.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2309) Zip PF02535.17 gi|110668528|ref|YP_658339.1| - 0.37 9.7 1.4 0.64 8.9 0.0 1.9 2 0 0 2 2 2 0 ZIP Zinc transporter DUF159 PF02586.9 gi|110668529|ref|YP_658340.1| - 1.3e-58 198.0 0.0 1.4e-58 197.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ACR, COG2135 RNase_H_2 PF13482.1 gi|110668530|ref|YP_658341.1| - 1.2e-35 122.7 0.0 1.6e-35 122.3 0.0 1.1 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_A_exo1 PF01612.15 gi|110668530|ref|YP_658341.1| - 0.00066 19.2 0.0 0.0014 18.1 0.0 1.6 1 1 0 1 1 1 1 3'-5' exonuclease DNA_pol_B_exo2 PF10108.4 gi|110668530|ref|YP_658341.1| - 0.037 13.5 0.0 0.47 9.9 0.0 2.1 2 0 0 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Glycos_transf_2 PF00535.21 gi|110668531|ref|YP_658342.1| - 3.3e-20 72.4 0.0 4.1e-20 72.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|110668531|ref|YP_658342.1| - 4e-10 39.8 0.2 5e-10 39.5 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Bactofilin PF04519.8 gi|110668533|ref|YP_658344.1| - 1.4e-10 41.0 5.5 9.8e-08 31.9 0.1 3.9 2 2 1 3 3 3 2 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|110668533|ref|YP_658344.1| - 1.6e-06 27.3 8.3 0.036 13.5 0.0 6.0 4 2 2 6 6 6 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|110668533|ref|YP_658344.1| - 0.00091 18.7 7.9 0.19 11.3 0.1 4.2 3 1 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase DUF3494 PF11999.3 gi|110668533|ref|YP_658344.1| - 0.0018 17.9 0.1 0.013 15.1 0.1 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF3494) MMR_HSR1_C PF08438.5 gi|110668534|ref|YP_658345.1| - 5.5e-31 107.0 0.1 9e-31 106.3 0.1 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|110668534|ref|YP_658345.1| - 3.4e-16 59.2 0.0 1e-15 57.6 0.0 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|110668534|ref|YP_658345.1| - 1.9e-12 46.8 0.0 5.2e-12 45.4 0.0 1.7 2 0 0 2 2 2 1 TGS domain FeoB_N PF02421.13 gi|110668534|ref|YP_658345.1| - 4.4e-10 39.0 0.1 6.3e-08 32.0 0.0 2.7 3 0 0 3 3 3 1 Ferrous iron transport protein B Miro PF08477.8 gi|110668534|ref|YP_658345.1| - 0.031 14.7 0.0 1 9.8 0.0 2.6 2 1 0 2 2 2 0 Miro-like protein NOG1 PF06858.9 gi|110668534|ref|YP_658345.1| - 0.15 11.9 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 Nucleolar GTP-binding protein 1 (NOG1) Aminotran_1_2 PF00155.16 gi|110668535|ref|YP_658346.1| - 1.3e-61 208.6 0.0 1.4e-61 208.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|110668535|ref|YP_658346.1| - 2.7e-13 49.7 0.2 4.1e-13 49.1 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|110668535|ref|YP_658346.1| - 2.6e-10 39.9 0.0 4.2e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|110668535|ref|YP_658346.1| - 2.2e-08 33.2 0.0 2.9e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|110668535|ref|YP_658346.1| - 5.2e-07 28.2 0.0 7.1e-07 27.8 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme NMT1_2 PF13379.1 gi|110668536|ref|YP_658347.1| - 2e-29 102.7 0.0 2.7e-29 102.3 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.6 gi|110668536|ref|YP_658347.1| - 1.2e-05 25.0 0.0 6.2e-05 22.6 0.0 1.9 1 1 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|110668536|ref|YP_658347.1| - 0.001 18.4 0.0 0.0015 17.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein DUF4621 PF15414.1 gi|110668536|ref|YP_658347.1| - 0.03 13.0 0.1 0.051 12.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4621) TAT_signal PF10518.4 gi|110668536|ref|YP_658347.1| - 0.039 13.9 1.9 0.13 12.3 1.3 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|110668537|ref|YP_658348.1| - 1.4e-20 73.6 9.7 1.4e-20 73.6 6.7 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|110668538|ref|YP_658349.1| - 2.4e-34 118.5 0.0 3.4e-34 118.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110668538|ref|YP_658349.1| - 6.6e-07 29.5 0.0 0.0063 16.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|110668538|ref|YP_658349.1| - 3.5e-06 27.1 0.0 5.1e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|110668538|ref|YP_658349.1| - 0.00015 20.9 0.0 0.00023 20.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|110668538|ref|YP_658349.1| - 0.00032 20.7 0.0 0.024 14.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|110668538|ref|YP_658349.1| - 0.00035 20.7 0.2 0.0013 18.9 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|110668538|ref|YP_658349.1| - 0.0023 17.3 0.0 0.0043 16.5 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_29 PF13555.1 gi|110668538|ref|YP_658349.1| - 0.0028 17.1 0.0 0.0067 15.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain PduV-EutP PF10662.4 gi|110668538|ref|YP_658349.1| - 0.0035 16.8 0.0 0.0081 15.6 0.0 1.6 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AAA_5 PF07728.9 gi|110668538|ref|YP_658349.1| - 0.0045 16.7 0.0 0.0098 15.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) DEAD PF00270.24 gi|110668538|ref|YP_658349.1| - 0.0072 15.8 0.0 0.37 10.2 0.0 2.1 1 1 0 1 1 1 1 DEAD/DEAH box helicase ATP-synt_ab PF00006.20 gi|110668538|ref|YP_658349.1| - 0.0076 15.7 0.1 0.0076 15.7 0.1 1.3 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_22 PF13401.1 gi|110668538|ref|YP_658349.1| - 0.01 16.0 0.1 0.026 14.6 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_23 PF13476.1 gi|110668538|ref|YP_658349.1| - 0.012 15.9 0.0 0.018 15.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|110668538|ref|YP_658349.1| - 0.012 15.0 0.0 0.034 13.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|110668538|ref|YP_658349.1| - 0.012 15.2 0.0 0.045 13.4 0.0 1.8 2 0 0 2 2 2 0 Archaeal ATPase AAA_19 PF13245.1 gi|110668538|ref|YP_658349.1| - 0.013 15.2 0.5 0.15 11.8 0.1 2.6 2 0 0 2 2 2 0 Part of AAA domain NB-ARC PF00931.17 gi|110668538|ref|YP_658349.1| - 0.013 14.3 0.0 0.028 13.2 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain AAA_30 PF13604.1 gi|110668538|ref|YP_658349.1| - 0.014 15.0 0.0 0.078 12.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|110668538|ref|YP_658349.1| - 0.014 16.1 0.1 0.032 15.0 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|110668538|ref|YP_658349.1| - 0.015 15.2 0.3 0.02 14.7 0.2 1.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|110668538|ref|YP_658349.1| - 0.018 14.7 0.0 0.033 13.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain UPF0079 PF02367.12 gi|110668538|ref|YP_658349.1| - 0.024 14.2 0.0 0.045 13.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_18 PF13238.1 gi|110668538|ref|YP_658349.1| - 0.069 13.4 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|110668538|ref|YP_658349.1| - 0.077 12.8 0.0 0.27 11.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.7 gi|110668538|ref|YP_658349.1| - 0.096 11.7 0.0 0.2 10.6 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|110668538|ref|YP_658349.1| - 0.11 11.6 0.0 0.37 9.9 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Rad17 PF03215.10 gi|110668538|ref|YP_658349.1| - 0.11 11.1 0.0 0.15 10.7 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein PhoH PF02562.11 gi|110668538|ref|YP_658349.1| - 0.12 11.5 0.0 0.39 9.9 0.0 1.7 2 0 0 2 2 2 0 PhoH-like protein AAA_24 PF13479.1 gi|110668538|ref|YP_658349.1| - 0.12 11.9 0.1 1.3 8.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|110668538|ref|YP_658349.1| - 0.12 11.3 0.0 1.9 7.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Miro PF08477.8 gi|110668538|ref|YP_658349.1| - 0.12 12.8 0.0 0.44 11.0 0.0 1.8 2 0 0 2 2 2 0 Miro-like protein RNA_helicase PF00910.17 gi|110668538|ref|YP_658349.1| - 0.13 12.4 0.0 0.24 11.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase SRPRB PF09439.5 gi|110668538|ref|YP_658349.1| - 0.14 11.3 0.0 0.48 9.6 0.0 1.8 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit MMR_HSR1 PF01926.18 gi|110668538|ref|YP_658349.1| - 0.14 12.0 0.0 0.22 11.4 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase ResIII PF04851.10 gi|110668540|ref|YP_658351.1| - 9.2e-29 100.5 0.2 1.4e-26 93.4 0.0 3.1 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|110668540|ref|YP_658351.1| - 9.8e-18 63.7 0.8 2.4e-17 62.5 0.2 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|110668540|ref|YP_658351.1| - 4.1e-11 42.6 0.0 1.2e-10 41.1 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF2075 PF09848.4 gi|110668540|ref|YP_658351.1| - 0.00045 19.2 0.2 0.0022 17.0 0.1 2.0 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Helicase_C_2 PF13307.1 gi|110668540|ref|YP_658351.1| - 0.0052 16.7 0.1 0.075 12.9 0.0 2.7 3 0 0 3 3 3 1 Helicase C-terminal domain AAA_30 PF13604.1 gi|110668540|ref|YP_658351.1| - 0.0067 16.0 0.0 0.013 15.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|110668540|ref|YP_658351.1| - 0.047 13.8 0.1 0.4 10.8 0.0 2.4 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|110668540|ref|YP_658351.1| - 0.056 12.8 0.0 0.39 10.1 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein PT-HINT PF07591.6 gi|110668540|ref|YP_658351.1| - 0.093 12.6 0.1 0.38 10.6 0.0 2.0 2 0 0 2 2 2 0 Pretoxin HINT domain DUF790 PF05626.6 gi|110668541|ref|YP_658352.1| - 5.5e-118 393.7 0.3 6.8e-118 393.4 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF790) Nol1_Nop2_Fmu_2 PF13636.1 gi|110668542|ref|YP_658353.1| - 8.1e-17 61.1 0.0 1e-16 60.8 0.0 1.1 1 0 0 1 1 1 1 pre-rRNA processing and ribosome biogenesis Nol1_Nop2_Fmu PF01189.12 gi|110668543|ref|YP_658354.1| - 1.8e-47 162.1 0.0 2.2e-47 161.8 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|110668543|ref|YP_658354.1| - 6.4e-06 25.8 0.0 1e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|110668543|ref|YP_658354.1| - 1.2e-05 25.8 0.0 1.9e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|110668543|ref|YP_658354.1| - 4.6e-05 23.4 0.1 0.00016 21.6 0.1 1.8 2 0 0 2 2 2 1 Methyltransferase domain FtsJ PF01728.14 gi|110668543|ref|YP_658354.1| - 0.022 14.7 0.0 0.037 14.0 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_15 PF09445.5 gi|110668543|ref|YP_658354.1| - 0.064 12.8 0.0 0.12 11.9 0.0 1.5 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase PAC2 PF09754.4 gi|110668544|ref|YP_658355.1| - 7.3e-43 146.9 0.1 8.3e-43 146.7 0.1 1.0 1 0 0 1 1 1 1 PAC2 family GrpE PF01025.14 gi|110668545|ref|YP_658356.1| - 3.8e-33 114.3 13.8 3.8e-33 114.3 9.6 2.6 2 1 0 2 2 2 1 GrpE CENP-Q PF13094.1 gi|110668545|ref|YP_658356.1| - 0.001 19.0 5.4 0.001 19.0 3.8 3.0 2 1 1 3 3 3 1 CENP-Q, a CENPA-CAD centromere complex subunit KH_1 PF00013.24 gi|110668545|ref|YP_658356.1| - 0.058 13.0 0.0 0.16 11.6 0.0 1.8 1 0 0 1 1 1 0 KH domain DUF1423 PF07227.6 gi|110668545|ref|YP_658356.1| - 0.25 9.9 7.5 0.43 9.1 5.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1423) ApoO PF09769.4 gi|110668545|ref|YP_658356.1| - 0.55 9.9 3.3 1.2 8.8 2.3 1.6 1 0 0 1 1 1 0 Apolipoprotein O Sugarporin_N PF11471.3 gi|110668545|ref|YP_658356.1| - 7.2 6.3 6.8 17 5.1 4.7 1.6 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension HSP70 PF00012.15 gi|110668546|ref|YP_658357.1| - 5.6e-238 790.7 15.2 2e-209 696.4 8.0 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.8 gi|110668546|ref|YP_658357.1| - 3.2e-18 65.4 0.3 3.2e-18 65.4 0.2 2.5 2 1 0 2 2 2 1 MreB/Mbl protein FGGY_C PF02782.11 gi|110668546|ref|YP_658357.1| - 0.0004 20.0 0.0 0.001 18.7 0.0 1.7 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain FIVAR PF07554.8 gi|110668546|ref|YP_658357.1| - 0.0024 18.0 2.3 0.012 15.8 1.0 2.7 1 1 1 2 2 2 1 Uncharacterised Sugar-binding Domain Hydantoinase_A PF01968.13 gi|110668546|ref|YP_658357.1| - 0.01 14.9 3.4 0.14 11.2 0.0 3.3 3 0 0 3 3 3 0 Hydantoinase/oxoprolinase DUF4446 PF14584.1 gi|110668546|ref|YP_658357.1| - 0.011 15.5 1.1 0.011 15.5 0.8 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) StbA PF06406.6 gi|110668546|ref|YP_658357.1| - 0.033 13.1 0.0 0.1 11.5 0.0 1.8 1 0 0 1 1 1 0 StbA protein FtsA PF14450.1 gi|110668546|ref|YP_658357.1| - 0.061 13.1 3.0 13 5.7 0.0 4.0 3 1 0 3 3 3 0 Cell division protein FtsA PhyH PF05721.8 gi|110668546|ref|YP_658357.1| - 0.12 12.3 1.0 0.34 10.9 0.7 1.7 1 0 0 1 1 1 0 Phytanoyl-CoA dioxygenase (PhyH) CorA PF01544.13 gi|110668546|ref|YP_658357.1| - 2.1 7.3 5.6 4.9 6.1 3.9 1.6 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF1664 PF07889.7 gi|110668546|ref|YP_658357.1| - 8.1 6.2 7.4 0.97 9.2 1.9 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) CTDII PF01556.13 gi|110668547|ref|YP_658358.1| - 8.7e-32 108.8 0.0 8.2e-23 80.1 0.0 3.0 3 0 0 3 3 3 2 DnaJ C terminal domain DnaJ PF00226.26 gi|110668547|ref|YP_658358.1| - 7.3e-25 86.4 2.3 1.6e-24 85.3 1.6 1.6 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|110668547|ref|YP_658358.1| - 9.5e-16 57.6 16.8 2.3e-15 56.4 11.7 1.7 1 0 0 1 1 1 1 DnaJ central domain DZR PF12773.2 gi|110668547|ref|YP_658358.1| - 0.0073 16.1 12.4 0.017 14.9 8.6 1.6 1 1 0 1 1 1 1 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|110668547|ref|YP_658358.1| - 0.8 9.2 8.6 2.5 7.6 0.2 3.1 2 1 1 3 3 3 0 A2L zinc ribbon domain Opy2 PF09463.5 gi|110668547|ref|YP_658358.1| - 1.7 8.7 17.8 3.5 7.8 3.8 3.2 3 0 0 3 3 3 0 Opy2 protein zf-RING_3 PF14369.1 gi|110668547|ref|YP_658358.1| - 1.9 8.5 20.9 0.77 9.8 0.5 4.2 2 2 2 4 4 4 0 zinc-finger Mut7-C PF01927.11 gi|110668547|ref|YP_658358.1| - 2.2 8.2 4.9 46 3.9 4.1 2.4 1 1 1 2 2 2 0 Mut7-C RNAse domain AMP-binding PF00501.23 gi|110668548|ref|YP_658359.1| - 1.1e-05 24.0 0.0 0.0017 16.7 0.0 2.2 2 0 0 2 2 2 2 AMP-binding enzyme Acetyltransf_1 PF00583.19 gi|110668549|ref|YP_658360.1| - 3.7e-05 23.6 0.0 5.9e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|110668549|ref|YP_658360.1| - 0.006 16.7 0.0 0.0095 16.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|110668549|ref|YP_658360.1| - 0.014 15.4 0.0 0.024 14.7 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|110668549|ref|YP_658360.1| - 0.026 14.3 0.0 0.037 13.8 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF1656 PF07869.7 gi|110668551|ref|YP_658362.1| - 0.089 12.5 2.1 0.17 11.6 1.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1656) FtsX PF02687.16 gi|110668551|ref|YP_658362.1| - 0.16 11.7 8.0 0.21 11.3 5.5 1.1 1 0 0 1 1 1 0 FtsX-like permease family dCMP_cyt_deam_1 PF00383.17 gi|110668552|ref|YP_658363.1| - 5.8e-18 64.4 0.4 7.1e-18 64.1 0.3 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|110668552|ref|YP_658363.1| - 6.5e-13 48.7 0.6 9.4e-13 48.2 0.4 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region YwqJ-deaminase PF14431.1 gi|110668552|ref|YP_658363.1| - 0.03 14.1 0.3 0.21 11.4 0.1 1.9 1 1 1 2 2 2 0 YwqJ-like deaminase MafB19-deam PF14437.1 gi|110668552|ref|YP_658363.1| - 0.092 12.3 0.5 0.18 11.4 0.4 1.5 1 1 0 1 1 1 0 MafB19-like deaminase PNP_UDP_1 PF01048.15 gi|110668553|ref|YP_658364.1| - 2e-43 148.0 0.6 2.4e-43 147.8 0.4 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Pyr_redox_2 PF07992.9 gi|110668554|ref|YP_658365.1| - 5.7e-18 65.5 0.1 2.1e-17 63.6 0.0 2.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|110668554|ref|YP_658365.1| - 1.3e-09 38.3 0.6 3.5e-07 30.5 0.1 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|110668554|ref|YP_658365.1| - 2.3e-07 31.0 0.3 0.0011 19.0 0.0 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|110668554|ref|YP_658365.1| - 9.4e-05 22.2 0.9 2.6 7.7 0.0 3.4 3 0 0 3 3 3 3 FAD-NAD(P)-binding K_oxygenase PF13434.1 gi|110668554|ref|YP_658365.1| - 0.0048 15.8 0.0 0.92 8.3 0.0 2.4 2 0 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.16 gi|110668554|ref|YP_658365.1| - 0.051 13.1 0.4 4.6 6.7 0.1 2.4 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.1 gi|110668554|ref|YP_658365.1| - 0.059 13.3 0.1 17 5.5 0.0 2.7 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain HrcA_DNA-bdg PF03444.10 gi|110668555|ref|YP_658366.1| - 1.1e-36 124.1 0.1 1.5e-36 123.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|110668555|ref|YP_658366.1| - 1.1e-08 35.0 0.0 1.9e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|110668555|ref|YP_658366.1| - 2.6e-06 26.9 0.0 3.9e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|110668555|ref|YP_658366.1| - 0.032 13.9 0.0 0.055 13.1 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Epimerase PF01370.16 gi|110668556|ref|YP_658367.1| - 2.2e-42 145.1 0.5 2.8e-42 144.7 0.3 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|110668556|ref|YP_658367.1| - 7e-19 67.7 0.4 8.7e-19 67.4 0.3 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|110668556|ref|YP_658367.1| - 4.2e-15 55.2 0.1 6.3e-15 54.6 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|110668556|ref|YP_658367.1| - 2.7e-11 42.9 0.5 4.9e-08 32.2 0.1 2.6 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|110668556|ref|YP_658367.1| - 5.4e-11 41.9 0.1 5.6e-08 32.0 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|110668556|ref|YP_658367.1| - 1.1e-06 28.6 0.6 0.0077 16.1 0.1 2.4 1 1 1 2 2 2 2 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|110668556|ref|YP_658367.1| - 2.5e-05 24.3 0.0 3.1e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding KR PF08659.5 gi|110668556|ref|YP_658367.1| - 0.0043 16.7 0.3 0.33 10.5 0.1 2.3 1 1 1 2 2 2 1 KR domain 2OG-FeII_Oxy_4 PF13661.1 gi|110668556|ref|YP_658367.1| - 0.024 14.2 0.0 0.052 13.1 0.0 1.5 1 0 0 1 1 1 0 2OG-Fe(II) oxygenase superfamily DNA_topoisoIV PF00521.15 gi|110668557|ref|YP_658368.1| - 6.6e-149 496.3 0.0 8.8e-149 495.9 0.0 1.2 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|110668557|ref|YP_658368.1| - 1e-67 223.1 8.5 8.1e-12 44.2 0.2 6.4 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller DUF2262 PF10020.4 gi|110668557|ref|YP_658368.1| - 0.0085 16.2 0.7 0.019 15.1 0.2 1.8 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2262) DNA_gyraseB PF00204.20 gi|110668558|ref|YP_658369.1| - 4.1e-59 198.6 0.3 9.1e-59 197.5 0.2 1.6 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|110668558|ref|YP_658369.1| - 1.9e-30 104.3 0.0 4e-30 103.3 0.0 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.21 gi|110668558|ref|YP_658369.1| - 2.1e-20 72.5 0.0 5.7e-20 71.1 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.17 gi|110668558|ref|YP_658369.1| - 2.6e-18 65.8 0.6 5.4e-17 61.6 0.0 2.8 4 0 0 4 4 4 1 Toprim domain HATPase_c_3 PF13589.1 gi|110668558|ref|YP_658369.1| - 0.00047 19.8 2.0 0.0005 19.7 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Intein_splicing PF14890.1 gi|110668558|ref|YP_658369.1| - 0.004 16.0 2.0 0.0096 14.8 1.4 1.6 1 1 0 1 1 1 1 Intein splicing domain PT-HINT PF07591.6 gi|110668558|ref|YP_658369.1| - 0.005 16.7 0.4 1.1 9.1 0.0 2.5 1 1 1 2 2 2 1 Pretoxin HINT domain Topo-VIb_trans PF09239.6 gi|110668559|ref|YP_658370.1| - 1.2e-62 210.2 0.0 2.5e-62 209.1 0.0 1.6 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|110668559|ref|YP_658370.1| - 2.9e-13 49.5 0.1 1.6e-11 43.8 0.0 3.2 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|110668559|ref|YP_658370.1| - 1.1e-08 34.8 0.0 3.2e-06 26.8 0.0 3.1 2 0 0 2 2 2 2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|110668559|ref|YP_658370.1| - 0.00016 21.4 0.1 0.0016 18.2 0.0 2.7 3 0 0 3 3 3 1 Histidine kinase-like ATPase domain Intein_splicing PF14890.1 gi|110668559|ref|YP_658370.1| - 0.0058 15.5 0.0 0.037 12.9 0.0 2.1 2 0 0 2 2 2 1 Intein splicing domain TP6A_N PF04406.9 gi|110668560|ref|YP_658371.1| - 3.1e-20 71.5 0.2 5.5e-20 70.8 0.2 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase TMP-TENI PF02581.12 gi|110668561|ref|YP_658372.1| - 1.2e-59 200.4 4.3 1.4e-59 200.2 3.0 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI ThiG PF05690.9 gi|110668561|ref|YP_658372.1| - 2e-07 30.3 2.1 2.6e-07 30.0 1.5 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|110668561|ref|YP_658372.1| - 9.3e-05 21.7 7.6 0.00013 21.2 5.3 1.1 1 0 0 1 1 1 1 Nitronate monooxygenase DHO_dh PF01180.16 gi|110668561|ref|YP_658372.1| - 0.0006 18.8 0.7 0.00092 18.2 0.5 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase DUF561 PF04481.7 gi|110668561|ref|YP_658372.1| - 0.0023 16.9 0.8 0.0093 14.9 0.3 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF561) Dus PF01207.12 gi|110668561|ref|YP_658372.1| - 0.014 14.2 0.2 0.026 13.3 0.0 1.4 1 1 0 1 1 1 0 Dihydrouridine synthase (Dus) PRAI PF00697.17 gi|110668561|ref|YP_658372.1| - 0.044 13.3 0.2 3.6 7.0 0.1 2.2 2 0 0 2 2 2 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase IMPDH PF00478.20 gi|110668561|ref|YP_658372.1| - 0.064 12.1 7.7 0.077 11.8 5.3 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain OMPdecase PF00215.19 gi|110668561|ref|YP_658372.1| - 0.1 11.9 2.8 0.14 11.5 1.4 1.8 1 1 1 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.9 gi|110668561|ref|YP_658372.1| - 0.13 11.1 9.8 5.3 5.9 0.0 3.5 1 1 3 4 4 4 0 Putative N-acetylmannosamine-6-phosphate epimerase HK PF02110.10 gi|110668562|ref|YP_658373.1| - 1.6e-62 210.8 6.8 2e-62 210.5 4.7 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.12 gi|110668562|ref|YP_658373.1| - 1.9e-05 24.1 3.8 2.4e-05 23.7 2.6 1.2 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.7 gi|110668563|ref|YP_658374.1| - 1.1e-81 273.6 4.7 1.3e-81 273.3 3.2 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.19 gi|110668563|ref|YP_658374.1| - 5.1e-10 38.9 2.7 5.1e-10 38.9 1.9 1.4 2 0 0 2 2 2 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|110668563|ref|YP_658374.1| - 0.0044 16.3 4.3 0.011 14.9 3.0 1.7 1 1 0 1 1 1 1 Carbohydrate kinase HK PF02110.10 gi|110668563|ref|YP_658374.1| - 0.038 13.1 4.7 0.46 9.6 3.2 2.3 1 1 0 1 1 1 0 Hydroxyethylthiazole kinase family EIF_2_alpha PF07541.7 gi|110668563|ref|YP_658374.1| - 0.073 12.7 0.1 0.49 10.1 0.0 2.1 2 0 0 2 2 2 0 Eukaryotic translation initiation factor 2 alpha subunit Lactamase_B_3 PF13483.1 gi|110668564|ref|YP_658375.1| - 1e-27 96.8 0.1 1.4e-27 96.4 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain XdhC_C PF13478.1 gi|110668564|ref|YP_658375.1| - 0.012 15.9 0.0 0.021 15.1 0.0 1.4 1 0 0 1 1 1 0 XdhC Rossmann domain Pox_polyA_pol PF03296.8 gi|110668564|ref|YP_658375.1| - 0.025 14.1 0.0 0.12 11.9 0.0 1.9 2 0 0 2 2 2 0 Poxvirus poly(A) polymerase nucleotidyltransferase domain DNA_ligase_A_M PF01068.16 gi|110668565|ref|YP_658376.1| - 2.9e-47 160.6 0.0 4.1e-47 160.1 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|110668565|ref|YP_658376.1| - 4e-38 130.9 0.0 8.7e-38 129.8 0.0 1.6 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|110668565|ref|YP_658376.1| - 7.7e-18 64.7 0.0 3.4e-17 62.6 0.0 2.2 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region DUF3839 PF12943.2 gi|110668565|ref|YP_658376.1| - 0.092 11.8 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3839) Proteasome PF00227.21 gi|110668567|ref|YP_658378.1| - 5.3e-51 172.6 0.2 6.1e-51 172.4 0.2 1.0 1 0 0 1 1 1 1 Proteasome subunit VP7 PF00434.13 gi|110668568|ref|YP_658379.1| - 0.0039 16.1 0.0 0.0044 15.9 0.0 1.0 1 0 0 1 1 1 1 Glycoprotein VP7 DUF555 PF04475.7 gi|110668569|ref|YP_658380.1| - 1.5e-45 153.3 0.0 1.8e-45 153.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zinc_ribbon_2 PF13240.1 gi|110668569|ref|YP_658380.1| - 0.019 14.4 0.2 0.032 13.7 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain CBS PF00571.23 gi|110668570|ref|YP_658381.1| - 5.7e-20 70.8 4.7 6.4e-14 51.4 0.0 2.7 2 1 0 2 2 2 2 CBS domain HTH_3 PF01381.17 gi|110668570|ref|YP_658381.1| - 5.9e-11 42.0 0.1 1.1e-10 41.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|110668570|ref|YP_658381.1| - 1.8e-10 40.8 0.7 3.7e-10 39.8 0.5 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|110668570|ref|YP_658381.1| - 4.4e-08 33.0 0.0 7.4e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|110668570|ref|YP_658381.1| - 0.0002 21.0 0.1 0.00037 20.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|110668570|ref|YP_658381.1| - 0.0045 17.1 0.0 0.0084 16.2 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain ILVD_EDD PF00920.16 gi|110668570|ref|YP_658381.1| - 0.0055 15.1 0.1 0.0075 14.7 0.1 1.2 1 0 0 1 1 1 1 Dehydratase family HTH_25 PF13413.1 gi|110668570|ref|YP_658381.1| - 0.02 14.5 0.1 0.033 13.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain AIRS_C PF02769.17 gi|110668571|ref|YP_658382.1| - 5e-17 62.3 0.0 9.1e-17 61.4 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|110668571|ref|YP_658382.1| - 1.4e-13 50.8 1.5 1.4e-13 50.8 1.0 1.8 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain PsaD PF02531.11 gi|110668571|ref|YP_658382.1| - 0.034 13.3 0.0 0.094 11.9 0.0 1.7 2 0 0 2 2 2 0 PsaD Peptidase_M50 PF02163.17 gi|110668573|ref|YP_658384.1| - 7.1e-08 31.6 14.7 7.1e-08 31.6 10.2 2.4 2 1 0 2 2 2 1 Peptidase family M50 Tmemb_185A PF10269.4 gi|110668573|ref|YP_658384.1| - 0.23 11.0 6.7 0.74 9.3 4.6 1.9 1 1 0 1 1 1 0 Transmembrane Fragile-X-F protein TraB PF01963.12 gi|110668574|ref|YP_658385.1| - 3.9e-38 131.3 0.1 1.5e-19 70.4 0.0 2.3 2 0 0 2 2 2 2 TraB family DUF399 PF04187.8 gi|110668574|ref|YP_658385.1| - 0.082 12.3 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF399 DNase-RNase PF02577.9 gi|110668575|ref|YP_658386.1| - 4.7e-36 122.9 0.0 5.3e-36 122.8 0.0 1.1 1 0 0 1 1 1 1 Bifunctional nuclease tRNA-synt_1 PF00133.17 gi|110668577|ref|YP_658388.1| - 3e-183 610.1 1.4 4.1e-183 609.6 1.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|110668577|ref|YP_658388.1| - 3.2e-32 111.3 0.2 6.9e-32 110.3 0.1 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|110668577|ref|YP_658388.1| - 7.7e-30 103.8 1.2 4.4e-11 42.0 0.0 4.5 4 1 0 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|110668577|ref|YP_658388.1| - 0.00021 20.6 0.0 0.00052 19.3 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.13 gi|110668577|ref|YP_658388.1| - 0.00055 18.7 0.0 0.0087 14.7 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.14 gi|110668577|ref|YP_658388.1| - 0.023 13.8 0.0 0.088 11.9 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain zf-FPG_IleRS PF06827.9 gi|110668577|ref|YP_658388.1| - 0.12 12.0 0.2 0.32 10.6 0.1 1.7 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS Dak1 PF02733.12 gi|110668578|ref|YP_658389.1| - 1.6e-99 332.5 5.5 2e-99 332.2 3.8 1.0 1 0 0 1 1 1 1 Dak1 domain Dak2 PF02734.12 gi|110668579|ref|YP_658390.1| - 5.8e-48 162.8 0.5 5.8e-48 162.8 0.4 1.5 2 0 0 2 2 2 1 DAK2 domain EIIA-man PF03610.11 gi|110668580|ref|YP_658391.1| - 7.5e-16 58.2 5.4 1.2e-08 34.9 1.5 2.1 1 1 1 2 2 2 2 PTS system fructose IIA component CoatB PF10389.4 gi|110668580|ref|YP_658391.1| - 3 7.7 8.3 1.2 9.1 0.7 2.6 2 0 0 2 2 2 0 Bacteriophage coat protein B DAO PF01266.19 gi|110668581|ref|YP_658392.1| - 2.3e-61 207.6 2.0 2.9e-61 207.3 1.4 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|110668581|ref|YP_658392.1| - 5.8e-07 28.8 3.6 1.8e-06 27.2 2.5 1.7 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|110668581|ref|YP_658392.1| - 2.2e-06 27.7 2.1 0.00013 21.9 1.4 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|110668581|ref|YP_658392.1| - 0.00022 21.3 0.2 0.34 10.9 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|110668581|ref|YP_658392.1| - 0.00031 19.9 4.0 0.00061 18.9 2.8 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|110668581|ref|YP_658392.1| - 0.0013 17.2 4.2 0.36 9.2 1.5 2.1 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|110668581|ref|YP_658392.1| - 0.0023 17.9 5.5 0.0076 16.2 3.8 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.13 gi|110668581|ref|YP_658392.1| - 0.006 16.2 1.3 0.012 15.2 0.9 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|110668581|ref|YP_658392.1| - 0.019 15.3 2.6 0.11 12.8 0.7 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|110668581|ref|YP_658392.1| - 0.02 14.0 1.7 0.02 14.0 1.1 2.2 2 1 0 2 2 2 0 Thi4 family FAD_binding_2 PF00890.19 gi|110668581|ref|YP_658392.1| - 0.032 13.0 10.8 0.35 9.6 7.5 2.0 1 1 0 1 1 1 0 FAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|110668581|ref|YP_658392.1| - 0.11 12.1 0.3 0.21 11.3 0.2 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|110668581|ref|YP_658392.1| - 0.13 12.6 0.2 0.76 10.2 0.4 2.1 2 0 0 2 2 1 0 NADP oxidoreductase coenzyme F420-dependent Lycopene_cycl PF05834.7 gi|110668581|ref|YP_658392.1| - 0.77 8.5 4.1 5.9 5.7 0.8 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|110668581|ref|YP_658392.1| - 5.8 6.6 6.7 0.61 9.8 1.2 1.9 2 0 0 2 2 2 0 FAD-NAD(P)-binding Hydrolase_3 PF08282.7 gi|110668582|ref|YP_658393.1| - 1.1e-26 94.0 0.0 1.3e-17 64.2 0.0 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|110668582|ref|YP_658393.1| - 5.5e-06 25.8 0.0 4.5e-05 22.8 0.0 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.21 gi|110668582|ref|YP_658393.1| - 0.0014 19.1 0.5 0.13 12.6 0.4 2.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|110668582|ref|YP_658393.1| - 0.049 12.5 0.1 0.22 10.4 0.0 1.9 2 0 0 2 2 2 0 Trehalose-phosphatase HAD_2 PF13419.1 gi|110668582|ref|YP_658393.1| - 0.05 13.8 0.2 4.6 7.4 0.0 2.6 1 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|110668582|ref|YP_658393.1| - 0.057 13.5 4.5 0.2 11.8 0.4 2.6 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase DUF2608 PF11019.3 gi|110668582|ref|YP_658393.1| - 0.13 11.2 0.0 0.24 10.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2608) zf-CCHC_5 PF14787.1 gi|110668583|ref|YP_658394.1| - 0.0036 16.7 0.1 0.057 12.9 0.1 2.2 2 1 0 2 2 2 1 GAG-polyprotein viral zinc-finger Methyltransf_11 PF08241.7 gi|110668584|ref|YP_658395.1| - 2.5e-17 63.1 0.0 4e-17 62.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|110668584|ref|YP_658395.1| - 7e-10 39.1 0.0 1.2e-09 38.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|110668584|ref|YP_658395.1| - 1.3e-09 37.8 0.0 2.1e-09 37.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|110668584|ref|YP_658395.1| - 3.8e-07 29.4 0.0 5.5e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|110668584|ref|YP_658395.1| - 5.6e-06 26.1 0.0 9.7e-06 25.3 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|110668584|ref|YP_658395.1| - 6.4e-06 26.7 0.0 1.2e-05 25.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|110668584|ref|YP_658395.1| - 0.0004 20.8 0.0 0.0007 20.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.7 gi|110668584|ref|YP_658395.1| - 0.0013 17.6 0.0 0.0017 17.2 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_26 PF13659.1 gi|110668584|ref|YP_658395.1| - 0.0018 18.2 0.0 0.0039 17.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|110668584|ref|YP_658395.1| - 0.047 12.6 0.0 0.064 12.2 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DUF368 PF04018.8 gi|110668585|ref|YP_658396.1| - 3.1e-67 226.4 18.2 3.1e-67 226.4 12.6 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF368) UDPG_MGDP_dh_N PF03721.9 gi|110668586|ref|YP_658397.1| - 2e-48 164.2 0.1 5.4e-47 159.5 0.0 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|110668586|ref|YP_658397.1| - 1.2e-32 111.9 0.1 2.3e-32 111.0 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|110668586|ref|YP_658397.1| - 1.9e-26 92.2 0.1 4.9e-26 90.9 0.1 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Pyr_redox PF00070.22 gi|110668586|ref|YP_658397.1| - 3.3e-05 24.2 0.1 0.0002 21.7 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|110668586|ref|YP_658397.1| - 5.7e-05 22.8 0.1 0.00021 20.9 0.0 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|110668586|ref|YP_658397.1| - 0.00017 21.3 0.0 0.00063 19.5 0.0 2.0 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|110668586|ref|YP_658397.1| - 0.0013 18.2 0.0 0.003 16.9 0.0 1.7 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_8 PF13450.1 gi|110668586|ref|YP_658397.1| - 0.0091 15.9 0.3 0.038 14.0 0.1 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain 2-Hacid_dh_C PF02826.14 gi|110668586|ref|YP_658397.1| - 0.02 14.0 0.1 0.9 8.6 0.0 2.4 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|110668586|ref|YP_658397.1| - 0.025 14.5 1.2 0.85 9.6 0.0 3.3 4 0 0 4 4 4 0 TrkA-N domain AlaDh_PNT_C PF01262.16 gi|110668586|ref|YP_658397.1| - 0.028 13.9 0.0 0.052 13.1 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain CHASE2 PF05226.6 gi|110668586|ref|YP_658397.1| - 0.033 13.4 0.3 0.18 11.0 0.1 2.2 2 0 0 2 2 2 0 CHASE2 domain NAD_binding_2 PF03446.10 gi|110668586|ref|YP_658397.1| - 0.07 12.9 0.0 3.4 7.4 0.0 2.6 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase DAO PF01266.19 gi|110668586|ref|YP_658397.1| - 0.3 9.9 2.3 0.45 9.3 0.7 1.9 2 0 0 2 2 2 0 FAD dependent oxidoreductase STT3 PF02516.9 gi|110668587|ref|YP_658398.1| - 3.8e-20 72.3 26.8 4e-20 72.2 15.1 2.7 2 1 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit NTP_transferase PF00483.18 gi|110668588|ref|YP_658399.1| - 9.8e-42 142.9 0.0 1.1e-41 142.7 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|110668588|ref|YP_658399.1| - 8e-15 55.2 0.0 9.5e-15 55.0 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|110668588|ref|YP_658399.1| - 5.1e-05 22.8 0.0 0.00025 20.6 0.0 1.9 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Epimerase PF01370.16 gi|110668589|ref|YP_658400.1| - 4.1e-63 212.9 0.2 5e-63 212.6 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|110668589|ref|YP_658400.1| - 9.2e-23 80.3 0.0 1.2e-22 79.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|110668589|ref|YP_658400.1| - 6.3e-17 61.3 0.2 1.1e-16 60.6 0.2 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|110668589|ref|YP_658400.1| - 2.4e-14 52.9 0.2 1.1e-13 50.7 0.2 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|110668589|ref|YP_658400.1| - 3.7e-13 48.9 1.0 4.7e-12 45.3 0.7 2.0 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|110668589|ref|YP_658400.1| - 8.4e-10 38.9 0.1 3.1e-06 27.2 0.0 2.1 2 0 0 2 2 2 2 NADH(P)-binding adh_short PF00106.20 gi|110668589|ref|YP_658400.1| - 5.1e-07 29.7 0.7 1.8e-06 27.9 0.5 2.0 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|110668589|ref|YP_658400.1| - 6.8e-05 22.2 0.2 0.00013 21.3 0.1 1.5 1 1 0 1 1 1 1 NmrA-like family Epimerase_Csub PF13950.1 gi|110668589|ref|YP_658400.1| - 0.00048 20.0 0.0 0.00097 19.0 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit 3HCDH_N PF02737.13 gi|110668589|ref|YP_658400.1| - 0.0016 18.1 0.1 0.0025 17.4 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KR PF08659.5 gi|110668589|ref|YP_658400.1| - 0.043 13.4 0.6 0.51 9.9 0.4 2.2 1 1 0 1 1 1 0 KR domain UDPG_MGDP_dh_N PF03721.9 gi|110668589|ref|YP_658400.1| - 0.064 12.6 0.5 0.31 10.4 0.1 2.2 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Glycos_transf_1 PF00534.15 gi|110668591|ref|YP_658402.1| - 2.9e-26 91.9 0.0 6.2e-26 90.8 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|110668591|ref|YP_658402.1| - 8.1e-18 64.8 0.0 7.4e-17 61.7 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|110668591|ref|YP_658402.1| - 2e-11 43.9 0.0 4.7e-11 42.8 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|110668591|ref|YP_658402.1| - 0.0053 16.9 11.0 0.038 14.1 2.6 3.0 2 2 0 2 2 2 2 Glycosyl transferase 4-like domain Glyco_trans_1_3 PF13528.1 gi|110668591|ref|YP_658402.1| - 0.035 13.3 0.0 0.077 12.1 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 1 Polysacc_synt PF01943.12 gi|110668592|ref|YP_658403.1| - 6.9e-35 120.6 17.5 6.9e-35 120.6 12.1 3.1 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|110668592|ref|YP_658403.1| - 1.5e-24 86.8 16.0 1.5e-24 86.8 11.1 2.7 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|110668592|ref|YP_658403.1| - 2.5e-14 53.2 28.8 2.5e-14 53.2 20.0 3.6 2 1 1 3 3 3 1 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|110668592|ref|YP_658403.1| - 0.00019 19.9 28.7 0.001 17.5 19.6 2.2 1 1 0 1 1 1 1 MviN-like protein Phosphodiest PF01663.17 gi|110668593|ref|YP_658404.1| - 1.4e-09 37.7 7.4 4.5e-08 32.8 5.1 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|110668593|ref|YP_658404.1| - 0.00044 19.7 0.1 0.00067 19.1 0.1 1.2 1 0 0 1 1 1 1 Metalloenzyme superfamily Sulfatase PF00884.18 gi|110668594|ref|YP_658405.1| - 1.1e-33 116.7 0.0 2.7e-33 115.4 0.0 1.5 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|110668594|ref|YP_658405.1| - 2.6e-10 40.2 1.4 7.8e-09 35.3 1.0 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|110668594|ref|YP_658405.1| - 1.1e-05 24.0 0.1 3.2e-05 22.5 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF229) DUF1501 PF07394.7 gi|110668594|ref|YP_658405.1| - 0.011 14.6 0.1 0.017 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1501) Glycos_transf_1 PF00534.15 gi|110668595|ref|YP_658406.1| - 6.4e-34 116.8 0.0 9.1e-34 116.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|110668595|ref|YP_658406.1| - 1.4e-20 73.7 0.0 4.1e-20 72.3 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|110668595|ref|YP_658406.1| - 8.6e-08 32.3 0.0 2.1e-07 31.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.21 gi|110668596|ref|YP_658407.1| - 3.8e-25 88.5 0.1 5.6e-25 87.9 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|110668596|ref|YP_658407.1| - 6.6e-17 62.0 0.1 8.8e-17 61.6 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|110668596|ref|YP_658407.1| - 5.2e-06 25.7 1.0 3.8e-05 22.9 0.1 2.0 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|110668596|ref|YP_658407.1| - 1.8e-05 24.5 0.2 3e-05 23.8 0.1 1.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|110668596|ref|YP_658407.1| - 0.0011 18.3 0.0 0.0019 17.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.21 gi|110668597|ref|YP_658408.1| - 1.5e-18 67.0 0.0 2.4e-18 66.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|110668597|ref|YP_658408.1| - 2.1e-10 40.7 1.1 3.2e-10 40.2 0.8 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|110668597|ref|YP_658408.1| - 5.1e-06 26.7 0.0 8.6e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.2 gi|110668597|ref|YP_658408.1| - 0.00011 22.2 0.0 0.00017 21.6 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain RHH_1 PF01402.16 gi|110668599|ref|YP_658410.1| - 4.9e-05 23.0 0.1 0.00011 21.9 0.0 1.6 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family GvpK PF05121.7 gi|110668599|ref|YP_658410.1| - 0.01 15.6 0.1 0.015 15.0 0.1 1.2 1 0 0 1 1 1 0 Gas vesicle protein K RHH_2 PF03693.9 gi|110668599|ref|YP_658410.1| - 0.012 15.7 0.3 0.076 13.1 0.1 1.8 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0156) DUF4336 PF14234.1 gi|110668601|ref|YP_658412.1| - 0.09 11.9 0.0 0.79 8.8 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4336) DUF2742 PF10888.3 gi|110668602|ref|YP_658413.1| - 0.13 12.1 0.0 0.15 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2742) TPP_enzyme_C PF02775.16 gi|110668604|ref|YP_658415.1| - 5.1e-50 169.0 0.8 1.2e-49 167.8 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.13 gi|110668604|ref|YP_658415.1| - 8e-50 168.6 0.4 2.4e-49 167.1 0.2 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|110668604|ref|YP_658415.1| - 1e-39 135.3 0.3 3.3e-39 133.7 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.11 gi|110668604|ref|YP_658415.1| - 0.049 13.1 0.0 0.083 12.4 0.0 1.4 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit ALS_ss_C PF10369.4 gi|110668605|ref|YP_658416.1| - 1.4e-20 72.8 0.2 2.9e-20 71.7 0.0 1.6 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|110668605|ref|YP_658416.1| - 2.2e-18 65.8 0.4 8.5e-18 63.9 0.1 2.0 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|110668605|ref|YP_658416.1| - 6.2e-10 38.3 0.5 2e-09 36.7 0.1 2.0 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.1 gi|110668605|ref|YP_658416.1| - 1.3e-05 24.7 0.1 3.1e-05 23.5 0.0 1.6 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|110668605|ref|YP_658416.1| - 0.0011 19.2 0.1 0.0023 18.2 0.0 1.5 1 0 0 1 1 1 1 ACT domain Phage_rep_org_N PF09681.5 gi|110668605|ref|YP_658416.1| - 0.016 14.7 0.0 0.032 13.8 0.0 1.4 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) IlvN PF07991.7 gi|110668606|ref|YP_658417.1| - 1.6e-68 229.2 0.5 2.2e-68 228.7 0.4 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|110668606|ref|YP_658417.1| - 4.7e-53 179.0 0.0 8.4e-53 178.1 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|110668606|ref|YP_658417.1| - 8.6e-08 32.5 0.2 2.4e-07 31.1 0.0 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|110668606|ref|YP_658417.1| - 9.7e-07 28.0 0.0 1.9e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|110668606|ref|YP_658417.1| - 0.00013 21.8 0.0 0.00027 20.7 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Oxidored_nitro PF00148.14 gi|110668606|ref|YP_658417.1| - 0.0034 16.0 0.4 0.0084 14.7 0.0 1.8 2 1 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase AdoHcyase_NAD PF00670.16 gi|110668606|ref|YP_658417.1| - 0.0062 16.3 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.11 gi|110668606|ref|YP_658417.1| - 0.023 14.1 0.1 0.049 13.0 0.1 1.6 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|110668606|ref|YP_658417.1| - 0.049 13.3 0.4 0.7 9.6 0.1 2.3 1 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|110668606|ref|YP_658417.1| - 0.053 13.1 0.4 0.13 11.8 0.0 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Aconitase PF00330.15 gi|110668607|ref|YP_658418.1| - 7.3e-142 473.1 0.1 8.3e-142 472.9 0.0 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|110668608|ref|YP_658419.1| - 4.1e-21 75.4 0.0 6e-21 74.9 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain GSHPx PF00255.14 gi|110668608|ref|YP_658419.1| - 0.078 12.3 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Glutathione peroxidase Iso_dh PF00180.15 gi|110668609|ref|YP_658420.1| - 5.6e-89 298.4 0.1 6.4e-89 298.3 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PTS-HPr PF00381.14 gi|110668610|ref|YP_658421.1| - 6.3e-29 99.7 0.0 7e-29 99.5 0.0 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site PEP-utilizers_C PF02896.13 gi|110668611|ref|YP_658422.1| - 2.9e-96 321.8 0.0 4.5e-96 321.2 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilisers_N PF05524.8 gi|110668611|ref|YP_658422.1| - 2.7e-27 94.9 0.6 5.3e-27 94.0 0.0 1.8 2 0 0 2 2 2 1 PEP-utilising enzyme, N-terminal PEP-utilizers PF00391.18 gi|110668611|ref|YP_658422.1| - 3.6e-23 80.9 0.5 8.9e-23 79.6 0.3 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain F_bP_aldolase PF01116.15 gi|110668612|ref|YP_658423.1| - 3.1e-85 285.7 0.0 3.5e-85 285.6 0.0 1.0 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-II TIM-br_sig_trns PF09370.5 gi|110668612|ref|YP_658423.1| - 0.1 11.6 0.0 0.31 10.0 0.0 1.7 1 1 1 2 2 2 0 TIM-barrel signal transduction protein Acetyltransf_1 PF00583.19 gi|110668613|ref|YP_658424.1| - 1.1e-11 44.5 0.0 2.6e-11 43.3 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|110668613|ref|YP_658424.1| - 3.1e-11 43.2 0.0 5.3e-11 42.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|110668613|ref|YP_658424.1| - 5.5e-11 42.6 0.0 7.4e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|110668613|ref|YP_658424.1| - 5.5e-07 29.2 0.0 1e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|110668613|ref|YP_658424.1| - 0.00019 21.3 0.0 0.0062 16.3 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|110668613|ref|YP_658424.1| - 0.0014 18.5 0.0 0.0027 17.6 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|110668613|ref|YP_658424.1| - 0.007 16.3 0.0 0.016 15.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|110668613|ref|YP_658424.1| - 0.016 15.1 0.0 0.028 14.3 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|110668613|ref|YP_658424.1| - 0.068 13.0 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase NTS_2 PF15448.1 gi|110668613|ref|YP_658424.1| - 0.36 11.1 1.9 0.72 10.1 1.3 1.5 1 0 0 1 1 1 0 N-terminal segments of P. falciparum erythrocyte membrane protein TrmB PF01978.14 gi|110668614|ref|YP_658425.1| - 0.0053 16.4 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|110668614|ref|YP_658425.1| - 0.011 15.5 0.2 0.019 14.7 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain IF-2B PF01008.12 gi|110668615|ref|YP_658426.1| - 6.8e-43 146.6 2.5 8.2e-43 146.4 1.7 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF3584 PF12128.3 gi|110668615|ref|YP_658426.1| - 0.028 11.7 2.1 0.031 11.6 1.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Adaptin_N PF01602.15 gi|110668615|ref|YP_658426.1| - 0.07 11.4 0.8 0.24 9.6 0.2 1.8 1 1 0 2 2 2 0 Adaptin N terminal region Seryl_tRNA_N PF02403.17 gi|110668615|ref|YP_658426.1| - 0.12 12.4 0.7 0.23 11.4 0.5 1.6 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain CHDCT2 PF08074.6 gi|110668616|ref|YP_658427.1| - 0.021 14.5 0.1 0.048 13.3 0.0 1.6 1 1 0 1 1 1 0 CHDCT2 (NUC038) domain Trypan_PARP PF05887.6 gi|110668616|ref|YP_658427.1| - 1.9 8.2 4.5 3.7 7.3 3.1 1.5 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) Neisseria_TspB PF05616.8 gi|110668616|ref|YP_658427.1| - 7.8 4.7 11.7 10 4.3 8.1 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein AAA PF00004.24 gi|110668618|ref|YP_658429.1| - 5e-99 327.6 0.0 3.4e-48 163.1 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|110668618|ref|YP_658429.1| - 1e-22 79.8 0.1 5e-22 77.6 0.1 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|110668618|ref|YP_658429.1| - 1.1e-18 67.7 0.1 2e-08 34.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|110668618|ref|YP_658429.1| - 1.4e-16 60.2 0.0 2.9e-08 33.0 0.0 2.7 3 0 0 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|110668618|ref|YP_658429.1| - 2.1e-15 57.2 0.2 9.2e-09 35.5 0.0 3.6 3 1 0 3 3 3 2 AAA ATPase domain CDC48_2 PF02933.12 gi|110668618|ref|YP_658429.1| - 2.9e-15 55.6 0.1 6.6e-15 54.5 0.1 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.1 gi|110668618|ref|YP_658429.1| - 2.7e-12 46.9 0.1 0.00042 20.4 0.0 3.8 2 2 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|110668618|ref|YP_658429.1| - 3.8e-11 42.9 0.0 0.00018 21.3 0.0 2.7 3 0 0 3 3 2 2 AAA domain AAA_5 PF07728.9 gi|110668618|ref|YP_658429.1| - 5.7e-11 42.3 0.4 0.00054 19.7 0.0 4.5 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|110668618|ref|YP_658429.1| - 5.7e-11 43.2 0.3 0.00016 22.4 0.1 2.9 2 1 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|110668618|ref|YP_658429.1| - 1.4e-10 41.2 0.0 0.00051 19.9 0.0 2.7 2 1 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|110668618|ref|YP_658429.1| - 3.5e-10 39.1 0.0 0.00014 20.7 0.0 2.4 2 0 0 2 2 2 2 TIP49 C-terminus Zeta_toxin PF06414.7 gi|110668618|ref|YP_658429.1| - 1.5e-09 37.2 0.0 0.0017 17.4 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin AAA_19 PF13245.1 gi|110668618|ref|YP_658429.1| - 3.5e-09 36.2 0.0 0.00072 19.2 0.0 2.9 2 0 0 2 2 2 2 Part of AAA domain IstB_IS21 PF01695.12 gi|110668618|ref|YP_658429.1| - 2.6e-08 33.4 0.0 0.0031 16.9 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|110668618|ref|YP_658429.1| - 5.4e-08 32.9 0.0 0.012 15.8 0.0 2.7 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.16 gi|110668618|ref|YP_658429.1| - 6.5e-08 31.9 0.2 0.0022 17.1 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|110668618|ref|YP_658429.1| - 4.2e-07 30.0 0.0 0.024 14.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.6 gi|110668618|ref|YP_658429.1| - 9.3e-07 28.5 0.0 0.009 15.6 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|110668618|ref|YP_658429.1| - 9.6e-07 29.1 0.1 0.01 16.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|110668618|ref|YP_658429.1| - 3e-06 26.7 0.0 0.062 12.7 0.0 3.1 3 0 0 3 3 3 2 Sigma-54 interaction domain ABC_tran PF00005.22 gi|110668618|ref|YP_658429.1| - 4.2e-06 27.1 0.0 0.077 13.2 0.0 2.7 2 0 0 2 2 2 2 ABC transporter AAA_11 PF13086.1 gi|110668618|ref|YP_658429.1| - 4.4e-06 26.4 0.0 0.035 13.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.1 gi|110668618|ref|YP_658429.1| - 5.3e-06 26.5 0.0 0.087 12.8 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain DUF815 PF05673.8 gi|110668618|ref|YP_658429.1| - 6.6e-06 25.2 0.0 0.016 14.1 0.0 2.7 2 1 0 2 2 2 2 Protein of unknown function (DUF815) NACHT PF05729.7 gi|110668618|ref|YP_658429.1| - 6.9e-06 25.8 0.1 0.18 11.4 0.0 3.7 4 0 0 4 4 4 2 NACHT domain NB-ARC PF00931.17 gi|110668618|ref|YP_658429.1| - 7.4e-06 25.0 0.0 0.091 11.5 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain PhoH PF02562.11 gi|110668618|ref|YP_658429.1| - 1e-05 24.8 0.2 0.1 11.8 0.0 2.8 3 0 0 3 3 2 2 PhoH-like protein AAA_25 PF13481.1 gi|110668618|ref|YP_658429.1| - 1.4e-05 24.6 6.9 1.1 8.5 0.1 4.5 3 2 1 5 5 4 3 AAA domain DUF2075 PF09848.4 gi|110668618|ref|YP_658429.1| - 3.1e-05 23.1 0.0 0.054 12.4 0.0 2.5 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Arch_ATPase PF01637.13 gi|110668618|ref|YP_658429.1| - 3.1e-05 23.7 0.0 0.45 10.1 0.0 3.2 2 1 1 3 3 3 2 Archaeal ATPase KaiC PF06745.8 gi|110668618|ref|YP_658429.1| - 5.6e-05 22.3 0.1 1.1 8.2 0.0 3.4 2 1 1 3 3 3 2 KaiC AAA_24 PF13479.1 gi|110668618|ref|YP_658429.1| - 5.7e-05 22.7 0.0 0.035 13.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain Parvo_NS1 PF01057.12 gi|110668618|ref|YP_658429.1| - 6.5e-05 21.9 0.0 0.18 10.6 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_30 PF13604.1 gi|110668618|ref|YP_658429.1| - 0.00014 21.5 0.0 0.51 9.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain NTPase_1 PF03266.10 gi|110668618|ref|YP_658429.1| - 0.00019 21.1 1.1 0.83 9.3 0.0 3.6 2 2 1 3 3 3 2 NTPase UPF0079 PF02367.12 gi|110668618|ref|YP_658429.1| - 0.00058 19.4 0.0 0.85 9.2 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 SKI PF01202.17 gi|110668618|ref|YP_658429.1| - 0.001 18.9 0.0 1.4 8.7 0.0 2.5 2 0 0 2 2 2 1 Shikimate kinase ATP-synt_ab PF00006.20 gi|110668618|ref|YP_658429.1| - 0.0011 18.5 0.0 0.41 10.0 0.0 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain T2SE PF00437.15 gi|110668618|ref|YP_658429.1| - 0.0013 17.6 0.0 1.1 8.0 0.0 2.5 2 0 0 2 2 2 2 Type II/IV secretion system protein Bac_DnaA PF00308.13 gi|110668618|ref|YP_658429.1| - 0.0014 18.3 0.0 0.39 10.3 0.0 2.5 2 1 0 2 2 2 1 Bacterial dnaA protein ResIII PF04851.10 gi|110668618|ref|YP_658429.1| - 0.0023 17.8 0.0 2.5 7.8 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Guanylate_kin PF00625.16 gi|110668618|ref|YP_658429.1| - 0.0046 16.4 0.4 7.7 5.9 0.0 3.9 2 2 2 4 4 3 0 Guanylate kinase Cytidylate_kin2 PF13189.1 gi|110668618|ref|YP_658429.1| - 0.011 15.6 0.1 0.54 10.1 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase-like family AFG1_ATPase PF03969.11 gi|110668618|ref|YP_658429.1| - 0.012 14.4 0.0 3.2 6.4 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase KTI12 PF08433.5 gi|110668618|ref|YP_658429.1| - 0.04 13.1 0.2 8.6 5.4 0.0 2.6 3 0 0 3 3 2 0 Chromatin associated protein KTI12 CPT PF07931.7 gi|110668618|ref|YP_658429.1| - 0.043 13.4 0.0 3.4 7.2 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Torsin PF06309.6 gi|110668618|ref|YP_658429.1| - 0.046 13.6 0.0 2.8 7.8 0.0 2.5 2 0 0 2 2 2 0 Torsin DEAD PF00270.24 gi|110668618|ref|YP_658429.1| - 0.075 12.5 0.9 20 4.5 0.1 3.3 2 2 1 4 4 3 0 DEAD/DEAH box helicase Vps4_C PF09336.5 gi|110668618|ref|YP_658429.1| - 0.081 12.8 0.0 6.8 6.6 0.0 2.9 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain MobB PF03205.9 gi|110668618|ref|YP_658429.1| - 0.091 12.4 0.3 26 4.4 0.0 3.4 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B Viral_helicase1 PF01443.13 gi|110668618|ref|YP_658429.1| - 0.099 12.1 0.0 7.7 5.9 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_23 PF13476.1 gi|110668618|ref|YP_658429.1| - 0.1 12.9 0.1 23 5.2 0.0 3.0 3 0 0 3 3 2 0 AAA domain AhpC-TSA PF00578.16 gi|110668619|ref|YP_658430.1| - 1.6e-34 118.2 0.0 1.9e-34 118.0 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|110668619|ref|YP_658430.1| - 4.7e-21 74.8 0.0 5.6e-21 74.6 0.0 1.0 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.7 gi|110668619|ref|YP_658430.1| - 0.0036 16.7 0.0 0.004 16.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) DNA_primase_S PF01896.14 gi|110668621|ref|YP_658432.1| - 5.5e-25 87.8 0.0 9.2e-25 87.1 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit Histidinol_dh PF00815.15 gi|110668622|ref|YP_658433.1| - 3.7e-144 480.3 5.2 4.4e-144 480.1 3.6 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase SIP PF04954.8 gi|110668622|ref|YP_658433.1| - 0.47 10.8 3.8 0.52 10.6 1.4 2.1 2 0 0 2 2 2 0 Siderophore-interacting protein Fe-S_biosyn PF01521.15 gi|110668623|ref|YP_658434.1| - 3.1e-18 65.7 0.0 3.5e-18 65.5 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis 5_nucleotid_C PF02872.13 gi|110668625|ref|YP_658436.1| - 2.4e-29 102.3 0.0 4.5e-29 101.4 0.0 1.5 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.23 gi|110668625|ref|YP_658436.1| - 1.6e-06 27.6 0.0 2.9e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|110668625|ref|YP_658436.1| - 1.8e-05 24.6 2.1 0.00077 19.3 0.6 2.8 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain Usp PF00582.21 gi|110668626|ref|YP_658437.1| - 1e-09 38.7 2.0 1.9e-09 37.8 1.4 1.6 1 1 0 1 1 1 1 Universal stress protein family MS_channel PF00924.13 gi|110668627|ref|YP_658438.1| - 9.4e-37 126.3 0.1 1.4e-36 125.8 0.1 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel Colicin_V PF02674.11 gi|110668627|ref|YP_658438.1| - 0.1 12.4 8.7 0.17 11.7 6.0 1.3 1 0 0 1 1 1 0 Colicin V production protein EI24 PF07264.6 gi|110668627|ref|YP_658438.1| - 0.55 9.6 7.5 0.91 8.9 5.2 1.2 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) TrbC PF04956.8 gi|110668627|ref|YP_658438.1| - 5.6 7.0 11.5 1.8 8.6 0.2 2.2 2 0 0 2 2 2 0 TrbC/VIRB2 family Regulator_TrmB PF11495.3 gi|110668628|ref|YP_658439.1| - 6.4e-74 247.8 1.1 1.2e-73 246.9 0.5 1.6 2 0 0 2 2 2 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|110668628|ref|YP_658439.1| - 1.2e-20 72.9 0.0 2.6e-20 71.8 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|110668628|ref|YP_658439.1| - 8e-06 25.5 0.1 2.1e-05 24.2 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|110668628|ref|YP_658439.1| - 8.8e-06 25.3 0.1 2.3e-05 23.9 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|110668628|ref|YP_658439.1| - 0.00011 21.6 0.1 0.00024 20.6 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|110668628|ref|YP_658439.1| - 0.0013 18.0 0.0 0.0042 16.4 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|110668628|ref|YP_658439.1| - 0.0042 17.1 0.0 0.011 15.8 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_5 PF01022.15 gi|110668628|ref|YP_658439.1| - 0.0055 16.3 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF2250 PF10007.4 gi|110668628|ref|YP_658439.1| - 0.007 16.2 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_CodY PF08222.6 gi|110668628|ref|YP_658439.1| - 0.061 12.6 0.0 0.2 11.0 0.0 1.9 1 0 0 1 1 1 0 CodY helix-turn-helix domain Sigma70_r4 PF04545.11 gi|110668628|ref|YP_658439.1| - 0.083 12.2 0.1 5.4 6.4 0.0 2.9 2 1 0 2 2 2 0 Sigma-70, region 4 Phage_rep_org_N PF09681.5 gi|110668628|ref|YP_658439.1| - 0.14 11.6 0.0 0.33 10.5 0.0 1.6 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) RHH_1 PF01402.16 gi|110668629|ref|YP_658440.1| - 0.017 14.9 0.0 0.037 13.9 0.0 1.5 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family Baculo_LEF-11 PF06385.7 gi|110668629|ref|YP_658440.1| - 0.14 12.3 0.3 0.31 11.1 0.2 1.6 1 1 0 1 1 1 0 Baculovirus LEF-11 protein OrfB_IS605 PF01385.14 gi|110668630|ref|YP_658441.1| - 1.1e-47 162.3 0.0 1.4e-47 161.9 0.0 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|110668630|ref|YP_658441.1| - 8.9e-18 63.7 2.4 8.9e-18 63.7 1.6 2.4 2 0 0 2 2 2 1 Putative transposase DNA-binding domain C1_2 PF03107.11 gi|110668630|ref|YP_658441.1| - 0.024 14.7 3.8 0.06 13.4 2.6 1.7 1 0 0 1 1 1 0 C1 domain DUF3791 PF12668.2 gi|110668630|ref|YP_658441.1| - 0.12 11.9 0.0 0.31 10.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3791) RRN7 PF11781.3 gi|110668630|ref|YP_658441.1| - 3.8 7.0 8.6 0.71 9.4 3.3 1.9 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 C1_3 PF07649.7 gi|110668630|ref|YP_658441.1| - 5.5 7.1 7.6 0.61 10.1 1.8 2.0 2 0 0 2 2 2 0 C1-like domain AAA PF00004.24 gi|110668631|ref|YP_658442.1| - 1.6e-11 44.5 0.0 5.4e-11 42.8 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|110668631|ref|YP_658442.1| - 1.6e-06 28.2 0.3 7.3e-06 26.1 0.1 2.2 2 1 0 2 2 1 1 AAA domain IstB_IS21 PF01695.12 gi|110668631|ref|YP_658442.1| - 1.2e-05 24.7 0.1 0.00012 21.5 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_17 PF13207.1 gi|110668631|ref|YP_658442.1| - 2e-05 25.4 0.7 0.00018 22.3 0.5 2.6 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|110668631|ref|YP_658442.1| - 2.3e-05 23.5 0.0 5e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|110668631|ref|YP_658442.1| - 0.00021 21.0 0.1 0.0058 16.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|110668631|ref|YP_658442.1| - 0.0006 19.7 0.1 0.0021 17.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|110668631|ref|YP_658442.1| - 0.00069 19.6 0.0 0.0021 18.0 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|110668631|ref|YP_658442.1| - 0.00069 19.6 0.7 0.034 14.1 0.0 2.9 1 1 2 3 3 3 1 AAA ATPase domain AAA_14 PF13173.1 gi|110668631|ref|YP_658442.1| - 0.0023 17.8 0.0 0.0067 16.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|110668631|ref|YP_658442.1| - 0.0024 18.1 0.1 0.023 15.0 0.0 2.4 1 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|110668631|ref|YP_658442.1| - 0.0032 16.5 0.0 0.0077 15.3 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin NACHT PF05729.7 gi|110668631|ref|YP_658442.1| - 0.0044 16.6 0.0 0.18 11.4 0.0 2.3 1 1 0 1 1 1 1 NACHT domain Rad17 PF03215.10 gi|110668631|ref|YP_658442.1| - 0.0047 15.6 0.0 0.25 9.9 0.0 2.8 1 1 0 1 1 1 1 Rad17 cell cycle checkpoint protein Viral_helicase1 PF01443.13 gi|110668631|ref|YP_658442.1| - 0.0097 15.4 0.0 0.019 14.4 0.0 1.5 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.1 gi|110668631|ref|YP_658442.1| - 0.024 14.3 0.3 0.17 11.6 0.0 2.5 2 0 0 2 2 2 0 Part of AAA domain RNA_helicase PF00910.17 gi|110668631|ref|YP_658442.1| - 0.025 14.7 0.0 0.059 13.5 0.0 1.7 1 0 0 1 1 1 0 RNA helicase DUF258 PF03193.11 gi|110668631|ref|YP_658442.1| - 0.053 12.7 0.0 0.09 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Bac_DnaA PF00308.13 gi|110668631|ref|YP_658442.1| - 0.061 12.9 0.1 1.2 8.7 0.0 2.4 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_3 PF07726.6 gi|110668631|ref|YP_658442.1| - 0.12 11.9 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|110668632|ref|YP_658443.1| - 1.1e-36 126.1 0.1 1.4e-36 125.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110668632|ref|YP_658443.1| - 6.5e-12 46.0 0.0 1.8e-05 24.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|110668632|ref|YP_658443.1| - 2.1e-10 40.1 0.2 1.5e-09 37.4 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|110668632|ref|YP_658443.1| - 1.7e-06 27.6 0.0 0.0031 16.9 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_16 PF13191.1 gi|110668632|ref|YP_658443.1| - 9.5e-06 25.7 0.3 1.9e-05 24.7 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|110668632|ref|YP_658443.1| - 3.6e-05 23.2 0.0 7.2e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|110668632|ref|YP_658443.1| - 6.6e-05 23.0 0.0 0.00026 21.1 0.0 2.0 2 1 0 2 2 1 1 AAA domain DUF258 PF03193.11 gi|110668632|ref|YP_658443.1| - 0.00017 20.8 0.0 0.00028 20.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 ABC_ATPase PF09818.4 gi|110668632|ref|YP_658443.1| - 0.00026 19.7 0.1 0.92 8.0 0.0 2.9 3 0 0 3 3 3 2 Predicted ATPase of the ABC class Arch_ATPase PF01637.13 gi|110668632|ref|YP_658443.1| - 0.00046 19.9 0.0 0.0038 16.9 0.0 2.1 1 1 0 1 1 1 1 Archaeal ATPase AAA_23 PF13476.1 gi|110668632|ref|YP_658443.1| - 0.00061 20.1 0.3 0.0013 19.0 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|110668632|ref|YP_658443.1| - 0.00067 19.3 0.0 0.002 17.8 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|110668632|ref|YP_658443.1| - 0.0021 17.6 0.0 0.0052 16.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain DUF3987 PF13148.1 gi|110668632|ref|YP_658443.1| - 0.0046 15.5 0.0 0.0067 15.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3987) NB-ARC PF00931.17 gi|110668632|ref|YP_658443.1| - 0.0056 15.5 0.0 0.067 12.0 0.0 2.4 1 1 1 3 3 3 1 NB-ARC domain AAA_14 PF13173.1 gi|110668632|ref|YP_658443.1| - 0.0067 16.3 0.0 0.045 13.6 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|110668632|ref|YP_658443.1| - 0.0094 15.8 0.1 0.016 15.0 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|110668632|ref|YP_658443.1| - 0.011 16.5 0.6 0.02 15.7 0.4 1.7 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|110668632|ref|YP_658443.1| - 0.011 15.6 0.0 0.029 14.3 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_5 PF07728.9 gi|110668632|ref|YP_658443.1| - 0.012 15.3 0.0 1.9 8.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MutS_V PF00488.16 gi|110668632|ref|YP_658443.1| - 0.012 15.0 0.0 0.023 14.1 0.0 1.5 1 0 0 1 1 1 0 MutS domain V AAA_25 PF13481.1 gi|110668632|ref|YP_658443.1| - 0.012 14.9 0.2 0.04 13.3 0.0 1.9 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|110668632|ref|YP_658443.1| - 0.016 15.0 0.2 0.18 11.7 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|110668632|ref|YP_658443.1| - 0.019 15.1 0.3 0.74 10.0 0.0 2.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|110668632|ref|YP_658443.1| - 0.032 13.9 0.0 0.066 12.9 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.7 gi|110668632|ref|YP_658443.1| - 0.032 13.3 0.0 0.051 12.6 0.0 1.4 1 1 0 1 1 1 0 Zeta toxin NACHT PF05729.7 gi|110668632|ref|YP_658443.1| - 0.038 13.6 0.0 0.084 12.5 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_13 PF13166.1 gi|110668632|ref|YP_658443.1| - 0.041 12.3 0.0 0.27 9.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|110668632|ref|YP_658443.1| - 0.053 13.8 0.0 0.083 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|110668632|ref|YP_658443.1| - 0.057 13.1 0.0 0.34 10.6 0.0 2.2 1 1 0 1 1 1 0 NTPase T2SE PF00437.15 gi|110668632|ref|YP_658443.1| - 0.07 12.0 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein cobW PF02492.14 gi|110668632|ref|YP_658443.1| - 0.095 12.1 0.0 0.17 11.3 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain IstB_IS21 PF01695.12 gi|110668632|ref|YP_658443.1| - 0.11 11.8 0.0 0.29 10.5 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein BPD_transp_1 PF00528.17 gi|110668633|ref|YP_658444.1| - 1.5e-17 63.7 7.1 1.5e-17 63.7 4.9 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component MS_channel PF00924.13 gi|110668633|ref|YP_658444.1| - 0.55 9.5 8.7 0.88 8.8 6.0 1.3 1 0 0 1 1 1 0 Mechanosensitive ion channel SBP_bac_3 PF00497.15 gi|110668634|ref|YP_658445.1| - 2.7e-64 216.4 0.8 3.3e-64 216.2 0.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|110668634|ref|YP_658445.1| - 0.0026 17.3 0.0 0.004 16.7 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|110668634|ref|YP_658445.1| - 0.0089 15.4 0.1 0.047 13.0 0.1 2.3 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein TAT_signal PF10518.4 gi|110668634|ref|YP_658445.1| - 0.014 15.3 0.1 0.028 14.4 0.0 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence COX15-CtaA PF02628.10 gi|110668635|ref|YP_658446.1| - 2.8e-29 101.9 33.7 1.9e-27 95.9 23.4 2.2 1 1 0 1 1 1 1 Cytochrome oxidase assembly protein VKOR PF07884.9 gi|110668635|ref|YP_658446.1| - 0.01 15.7 1.9 0.01 15.7 1.3 3.6 2 1 2 4 4 4 0 Vitamin K epoxide reductase family Hum_adeno_E3A PF05393.6 gi|110668635|ref|YP_658446.1| - 1 9.0 3.8 1 9.0 0.2 2.6 2 1 1 3 3 3 0 Human adenovirus early E3A glycoprotein Peptidase_M24 PF00557.19 gi|110668636|ref|YP_658447.1| - 4.7e-13 49.2 2.2 7.5e-13 48.5 1.5 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|110668636|ref|YP_658447.1| - 4.9e-05 23.8 0.1 0.00013 22.4 0.0 1.9 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain PTA_PTB PF01515.14 gi|110668637|ref|YP_658448.1| - 6.9e-95 317.7 0.0 9.6e-95 317.2 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase Malic_M PF03949.10 gi|110668637|ref|YP_658448.1| - 4.6e-69 232.8 0.8 4.6e-69 232.8 0.5 1.6 2 0 0 2 2 2 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|110668637|ref|YP_658448.1| - 1e-28 100.1 0.0 3.4e-26 91.9 0.0 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain RNase_H PF00075.19 gi|110668638|ref|YP_658449.1| - 0.0088 16.3 0.0 0.014 15.7 0.0 1.3 1 0 0 1 1 1 1 RNase H EamA PF00892.15 gi|110668639|ref|YP_658450.1| - 6e-31 107.1 35.4 4e-17 62.4 11.4 2.5 2 1 1 3 3 3 2 EamA-like transporter family DUF914 PF06027.7 gi|110668639|ref|YP_658450.1| - 0.0016 17.3 7.3 0.0028 16.5 5.1 1.4 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF914) TPT PF03151.11 gi|110668639|ref|YP_658450.1| - 0.0062 16.1 9.2 0.0062 16.1 6.3 2.7 3 0 0 3 3 3 2 Triose-phosphate Transporter family DUF3021 PF11457.3 gi|110668639|ref|YP_658450.1| - 4.3 7.2 9.2 6.9 6.5 5.3 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3021) Cytidylate_kin2 PF13189.1 gi|110668641|ref|YP_658452.1| - 5.6e-20 71.9 0.1 4.4e-19 69.0 0.1 1.9 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|110668641|ref|YP_658452.1| - 4.4e-18 65.8 0.0 5.9e-18 65.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|110668641|ref|YP_658452.1| - 2.7e-09 37.8 0.2 4.8e-09 37.0 0.1 1.3 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|110668641|ref|YP_658452.1| - 0.00011 22.2 0.2 0.00035 20.5 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|110668641|ref|YP_658452.1| - 0.00023 21.0 0.0 0.0006 19.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|110668641|ref|YP_658452.1| - 0.00034 20.5 0.0 0.0011 18.8 0.0 1.8 2 0 0 2 2 2 1 Adenylate kinase AAA PF00004.24 gi|110668641|ref|YP_658452.1| - 0.00057 20.0 0.0 0.0016 18.6 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SKI PF01202.17 gi|110668641|ref|YP_658452.1| - 0.0019 18.0 0.4 0.016 15.0 0.3 2.0 1 1 0 1 1 1 1 Shikimate kinase AAA_19 PF13245.1 gi|110668641|ref|YP_658452.1| - 0.0058 16.3 0.0 0.01 15.5 0.0 1.5 1 1 0 1 1 1 1 Part of AAA domain RHH_4 PF13467.1 gi|110668641|ref|YP_658452.1| - 0.025 14.4 0.1 0.071 12.9 0.1 1.8 1 1 0 1 1 1 0 Ribbon-helix-helix domain Cytidylate_kin PF02224.13 gi|110668641|ref|YP_658452.1| - 0.036 13.5 0.1 0.057 12.8 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase DUF1684 PF07920.6 gi|110668642|ref|YP_658453.1| - 7.8e-57 191.1 0.2 2.6e-56 189.4 0.1 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF1684) Ribosomal_S10 PF00338.17 gi|110668644|ref|YP_658455.1| - 4e-12 45.8 0.0 4.7e-12 45.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e Peptidase_M20 PF01546.23 gi|110668645|ref|YP_658456.1| - 1.2e-14 54.2 12.2 3.9e-07 29.7 5.5 3.1 2 1 0 2 2 2 2 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|110668645|ref|YP_658456.1| - 7.6e-13 48.1 0.9 7.6e-13 48.1 0.6 2.2 2 0 0 2 2 2 1 Peptidase dimerisation domain PhoU PF01895.14 gi|110668647|ref|YP_658458.1| - 2.8e-10 40.5 7.0 6.6e-10 39.2 0.1 2.8 2 1 0 2 2 2 1 PhoU domain Antitoxin-MazE PF04014.13 gi|110668647|ref|YP_658458.1| - 1.5e-06 27.7 0.0 2.9e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE NAD_kinase PF01513.16 gi|110668648|ref|YP_658459.1| - 1.5e-42 145.3 0.3 1.7e-42 145.1 0.2 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|110668648|ref|YP_658459.1| - 2.8e-05 23.5 1.7 0.00013 21.3 0.0 2.6 3 0 0 3 3 3 1 Diacylglycerol kinase catalytic domain DeoRC PF00455.17 gi|110668648|ref|YP_658459.1| - 0.15 11.7 1.0 14 5.2 0.1 2.2 2 0 0 2 2 2 0 DeoR C terminal sensor domain SMP PF04927.7 gi|110668648|ref|YP_658459.1| - 6.8 6.7 10.9 0.61 10.0 1.0 3.1 3 0 0 3 3 3 0 Seed maturation protein zf-ribbon_3 PF13248.1 gi|110668649|ref|YP_658460.1| - 0.00033 19.7 0.3 0.00055 19.0 0.2 1.4 1 1 0 1 1 1 1 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|110668649|ref|YP_658460.1| - 0.0062 16.1 1.1 0.04 13.6 0.8 2.0 1 1 0 1 1 1 1 Nudix N-terminal DZR PF12773.2 gi|110668649|ref|YP_658460.1| - 0.0063 16.3 0.8 0.012 15.3 0.5 1.5 1 1 0 1 1 1 1 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|110668649|ref|YP_658460.1| - 0.013 15.0 2.2 0.13 11.8 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.4 gi|110668649|ref|YP_658460.1| - 0.015 15.0 1.5 0.51 10.0 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|110668649|ref|YP_658460.1| - 0.024 14.2 0.4 1 9.0 0.0 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|110668649|ref|YP_658460.1| - 0.032 13.7 1.7 3.5 7.2 0.1 2.3 2 1 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|110668649|ref|YP_658460.1| - 4 7.3 5.2 4.4 7.2 0.4 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain PAS_9 PF13426.1 gi|110668650|ref|YP_658461.1| - 3.3e-06 27.3 0.0 1.4e-05 25.3 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|110668650|ref|YP_658461.1| - 0.00019 21.4 0.0 0.00047 20.1 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|110668650|ref|YP_658461.1| - 0.00084 19.0 0.0 0.0034 17.1 0.0 2.0 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|110668650|ref|YP_658461.1| - 0.0016 18.2 0.0 0.0045 16.7 0.0 1.7 1 0 0 1 1 1 1 PAS domain DHHW PF14286.1 gi|110668650|ref|YP_658461.1| - 0.0084 15.4 1.3 0.0084 15.4 0.9 1.7 2 0 0 2 2 2 1 DHHW protein HATPase_c PF02518.21 gi|110668650|ref|YP_658461.1| - 0.032 13.9 0.2 0.13 12.0 0.1 2.2 1 1 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HTH_10 PF04967.7 gi|110668651|ref|YP_658462.1| - 2.3e-19 68.7 0.0 4.9e-19 67.6 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Response_reg PF00072.19 gi|110668651|ref|YP_658462.1| - 4.5e-15 55.6 2.5 6.8e-15 55.0 1.1 1.9 2 0 0 2 2 2 1 Response regulator receiver domain GAF_2 PF13185.1 gi|110668651|ref|YP_658462.1| - 0.0073 16.8 0.0 0.018 15.5 0.0 1.7 1 0 0 1 1 1 1 GAF domain Borrelia_lipo_2 PF06238.6 gi|110668651|ref|YP_658462.1| - 0.011 15.7 0.1 0.092 12.8 0.0 2.5 2 1 0 2 2 2 0 Borrelia burgdorferi BBR25 lipoprotein HalX PF08663.5 gi|110668651|ref|YP_658462.1| - 0.03 14.2 1.0 0.14 12.2 0.7 2.2 1 0 0 1 1 1 0 HalX domain Baculo_PEP_C PF04513.7 gi|110668651|ref|YP_658462.1| - 1.5 8.6 7.0 18 5.1 0.2 2.8 2 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Response_reg PF00072.19 gi|110668652|ref|YP_658463.1| - 1.8e-12 47.2 0.3 8e-12 45.1 0.2 1.9 1 1 0 1 1 1 1 Response regulator receiver domain DEAD_assoc PF08494.6 gi|110668653|ref|YP_658464.1| - 6.9e-40 136.7 0.4 1.9e-39 135.3 0.1 1.9 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.24 gi|110668653|ref|YP_658464.1| - 2.2e-30 105.3 0.0 5e-28 97.6 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|110668653|ref|YP_658464.1| - 5.9e-18 64.4 0.1 3.2e-17 62.1 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|110668653|ref|YP_658464.1| - 5.6e-08 32.8 0.0 1e-07 31.9 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|110668653|ref|YP_658464.1| - 0.016 14.9 0.0 0.099 12.4 0.0 2.5 1 0 0 1 1 1 0 Part of AAA domain AAA_11 PF13086.1 gi|110668653|ref|YP_658464.1| - 0.09 12.3 0.0 1.4 8.4 0.0 2.3 1 1 1 2 2 2 0 AAA domain AAA PF00004.24 gi|110668654|ref|YP_658465.1| - 5.4e-94 311.3 0.0 3.3e-46 156.7 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|110668654|ref|YP_658465.1| - 2.3e-21 75.5 0.9 5.4e-21 74.3 0.1 2.0 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_16 PF13191.1 gi|110668654|ref|YP_658465.1| - 3.4e-13 49.9 0.0 2.1e-05 24.5 0.0 3.4 2 1 0 2 2 2 2 AAA ATPase domain RuvB_N PF05496.7 gi|110668654|ref|YP_658465.1| - 5e-13 48.6 0.1 1.1e-05 24.6 0.0 3.2 4 0 0 4 4 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|110668654|ref|YP_658465.1| - 1.5e-12 47.7 0.0 1.6e-06 28.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|110668654|ref|YP_658465.1| - 6.6e-11 43.0 0.0 8.6e-05 23.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|110668654|ref|YP_658465.1| - 7.4e-11 42.3 0.1 0.002 18.2 0.0 4.1 2 2 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|110668654|ref|YP_658465.1| - 2.9e-10 40.1 0.0 0.00048 20.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|110668654|ref|YP_658465.1| - 3.9e-10 39.7 0.0 0.00016 21.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|110668654|ref|YP_658465.1| - 4.4e-10 39.1 1.3 0.00074 19.2 0.1 3.5 2 0 0 2 2 2 2 Part of AAA domain AAA_5 PF07728.9 gi|110668654|ref|YP_658465.1| - 8.1e-10 38.5 0.2 0.0016 18.2 0.0 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|110668654|ref|YP_658465.1| - 4e-09 35.6 0.0 0.00022 20.0 0.0 2.2 2 0 0 2 2 2 2 TIP49 C-terminus Zeta_toxin PF06414.7 gi|110668654|ref|YP_658465.1| - 1.5e-08 33.9 0.0 0.00065 18.8 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin AAA_28 PF13521.1 gi|110668654|ref|YP_658465.1| - 1.1e-07 31.9 0.0 0.0091 15.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|110668654|ref|YP_658465.1| - 1.1e-07 31.4 0.3 0.012 15.0 0.0 2.6 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|110668654|ref|YP_658465.1| - 2e-06 28.1 0.0 0.04 14.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|110668654|ref|YP_658465.1| - 3e-06 26.5 0.2 0.072 12.2 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI CDC48_2 PF02933.12 gi|110668654|ref|YP_658465.1| - 3.4e-06 26.6 0.1 1.3e-05 24.7 0.1 2.0 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 RNA_helicase PF00910.17 gi|110668654|ref|YP_658465.1| - 4.4e-06 26.8 0.0 0.063 13.4 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_3 PF07726.6 gi|110668654|ref|YP_658465.1| - 5.1e-06 26.1 0.0 0.046 13.3 0.0 2.7 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|110668654|ref|YP_658465.1| - 9.6e-06 25.9 0.0 0.12 12.6 0.0 2.7 2 0 0 2 2 2 2 ABC transporter AAA_25 PF13481.1 gi|110668654|ref|YP_658465.1| - 2.5e-05 23.7 8.3 0.25 10.7 0.1 4.4 2 2 1 4 4 4 2 AAA domain Sigma54_activat PF00158.21 gi|110668654|ref|YP_658465.1| - 3.2e-05 23.4 0.0 0.31 10.4 0.0 3.6 3 2 0 3 3 3 2 Sigma-54 interaction domain PhoH PF02562.11 gi|110668654|ref|YP_658465.1| - 0.0001 21.6 0.2 0.43 9.7 0.0 2.7 2 0 0 2 2 2 2 PhoH-like protein Parvo_NS1 PF01057.12 gi|110668654|ref|YP_658465.1| - 0.00013 20.9 0.0 0.35 9.7 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NACHT PF05729.7 gi|110668654|ref|YP_658465.1| - 0.00014 21.5 0.1 1.9 8.1 0.0 3.4 3 0 0 3 3 3 2 NACHT domain DUF2075 PF09848.4 gi|110668654|ref|YP_658465.1| - 0.00019 20.5 0.0 0.16 10.8 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.1 gi|110668654|ref|YP_658465.1| - 0.0002 21.0 0.0 0.45 10.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.1 gi|110668654|ref|YP_658465.1| - 0.00047 19.8 0.5 0.19 11.3 0.1 2.4 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|110668654|ref|YP_658465.1| - 0.00054 18.9 0.0 1.2 7.9 0.0 3.0 2 2 0 2 2 2 2 Protein of unknown function (DUF815) AAA_30 PF13604.1 gi|110668654|ref|YP_658465.1| - 0.00055 19.5 0.0 0.51 9.8 0.0 2.8 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|110668654|ref|YP_658465.1| - 0.00062 18.7 0.0 0.18 10.6 0.0 2.2 2 0 0 2 2 2 1 NB-ARC domain Sigma54_activ_2 PF14532.1 gi|110668654|ref|YP_658465.1| - 0.00089 19.3 0.0 1.1 9.3 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain UPF0079 PF02367.12 gi|110668654|ref|YP_658465.1| - 0.0016 18.0 0.0 1.2 8.7 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Cytidylate_kin2 PF13189.1 gi|110668654|ref|YP_658465.1| - 0.0026 17.6 0.0 0.18 11.6 0.0 2.4 2 0 0 2 2 2 1 Cytidylate kinase-like family KaiC PF06745.8 gi|110668654|ref|YP_658465.1| - 0.0028 16.8 0.1 1.7 7.6 0.0 3.0 3 0 0 3 3 3 1 KaiC SKI PF01202.17 gi|110668654|ref|YP_658465.1| - 0.0029 17.4 0.0 1.4 8.7 0.0 2.6 2 0 0 2 2 2 1 Shikimate kinase Arch_ATPase PF01637.13 gi|110668654|ref|YP_658465.1| - 0.0033 17.1 0.0 5.6 6.5 0.0 3.2 2 2 2 4 4 4 0 Archaeal ATPase NTPase_1 PF03266.10 gi|110668654|ref|YP_658465.1| - 0.0065 16.1 0.1 1.3 8.7 0.0 3.0 2 1 0 3 3 2 1 NTPase CPT PF07931.7 gi|110668654|ref|YP_658465.1| - 0.007 15.9 0.0 0.27 10.8 0.0 2.5 2 0 0 2 2 2 1 Chloramphenicol phosphotransferase-like protein ResIII PF04851.10 gi|110668654|ref|YP_658465.1| - 0.0075 16.1 0.0 2.6 7.8 0.0 2.7 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Viral_helicase1 PF01443.13 gi|110668654|ref|YP_658465.1| - 0.02 14.4 0.0 0.81 9.1 0.0 2.7 3 0 0 3 3 3 0 Viral (Superfamily 1) RNA helicase Torsin PF06309.6 gi|110668654|ref|YP_658465.1| - 0.082 12.7 0.0 2 8.3 0.0 2.4 2 0 0 2 2 2 0 Torsin Bac_DnaA PF00308.13 gi|110668654|ref|YP_658465.1| - 0.15 11.6 0.0 25 4.4 0.0 2.4 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_23 PF13476.1 gi|110668654|ref|YP_658465.1| - 0.16 12.3 0.1 20 5.4 0.0 2.6 2 0 0 2 2 2 0 AAA domain Peripla_BP_6 PF13458.1 gi|110668655|ref|YP_658466.1| - 1.6e-45 155.9 5.5 2.6e-45 155.2 3.8 1.3 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|110668655|ref|YP_658466.1| - 8.3e-29 100.4 1.2 9.7e-29 100.2 0.8 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|110668655|ref|YP_658466.1| - 2.9e-15 55.9 1.4 3.3e-11 42.5 0.0 2.0 2 0 0 2 2 2 2 Periplasmic binding protein domain TAT_signal PF10518.4 gi|110668655|ref|YP_658466.1| - 0.053 13.5 2.4 0.15 12.1 1.7 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_2 PF02653.11 gi|110668656|ref|YP_658467.1| - 1.5e-34 119.1 42.7 1.9e-34 118.8 29.6 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF106 PF01956.11 gi|110668656|ref|YP_658467.1| - 0.7 9.4 3.2 1.1 8.8 0.6 2.4 1 1 1 2 2 2 0 Integral membrane protein DUF106 BPD_transp_2 PF02653.11 gi|110668657|ref|YP_658468.1| - 2.1e-46 158.0 31.5 2.5e-46 157.7 21.9 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component HCV_NS4a PF01006.15 gi|110668657|ref|YP_658468.1| - 0.015 14.8 2.5 0.046 13.2 1.7 1.8 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a Coa1 PF08695.5 gi|110668657|ref|YP_658468.1| - 0.11 11.9 0.0 0.25 10.8 0.0 1.6 1 0 0 1 1 1 0 Cytochrome oxidase complex assembly protein 1 ABC_tran PF00005.22 gi|110668658|ref|YP_658469.1| - 1.7e-34 119.0 0.0 2.3e-34 118.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110668658|ref|YP_658469.1| - 7.8e-14 52.3 2.0 1.3e-11 45.0 1.4 2.1 1 1 0 1 1 1 1 AAA domain BCA_ABC_TP_C PF12399.3 gi|110668658|ref|YP_658469.1| - 1.5e-07 30.9 0.0 2.6e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.1 gi|110668658|ref|YP_658469.1| - 1.8e-06 28.4 1.8 2.1e-06 28.2 0.7 1.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|110668658|ref|YP_658469.1| - 1.5e-05 24.4 0.2 2.9e-05 23.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|110668658|ref|YP_658469.1| - 0.00032 20.7 0.9 0.42 10.5 0.1 2.2 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|110668658|ref|YP_658469.1| - 0.00065 18.9 1.6 0.023 13.9 1.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|110668658|ref|YP_658469.1| - 0.0016 17.6 0.1 0.0026 16.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|110668658|ref|YP_658469.1| - 0.0055 15.7 0.2 0.6 9.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain MMR_HSR1 PF01926.18 gi|110668658|ref|YP_658469.1| - 0.0082 16.0 0.1 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase Mg_chelatase PF01078.16 gi|110668658|ref|YP_658469.1| - 0.093 11.8 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.1 gi|110668658|ref|YP_658469.1| - 0.13 11.8 0.0 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|110668658|ref|YP_658469.1| - 0.37 10.9 2.5 3.6 7.7 0.1 2.3 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|110668659|ref|YP_658470.1| - 3.5e-30 105.0 0.0 5.2e-30 104.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110668659|ref|YP_658470.1| - 5.7e-12 46.2 0.4 7.7e-05 22.8 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|110668659|ref|YP_658470.1| - 8.2e-07 29.2 0.0 1.7e-06 28.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|110668659|ref|YP_658470.1| - 1.3e-06 28.9 0.0 1.7e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|110668659|ref|YP_658470.1| - 1.8e-06 27.6 0.1 0.013 14.9 0.0 2.1 1 1 0 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|110668659|ref|YP_658470.1| - 8.5e-06 25.2 0.0 2.1e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|110668659|ref|YP_658470.1| - 3.5e-05 23.1 0.0 0.021 14.0 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|110668659|ref|YP_658470.1| - 0.00014 21.9 0.0 0.0027 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_15 PF13175.1 gi|110668659|ref|YP_658470.1| - 0.00019 20.6 0.1 0.17 10.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA PF00004.24 gi|110668659|ref|YP_658470.1| - 0.00022 21.4 0.0 0.0012 19.0 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|110668659|ref|YP_658470.1| - 0.00028 21.6 0.0 0.00048 20.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|110668659|ref|YP_658470.1| - 0.0004 20.1 0.0 0.00058 19.6 0.0 1.4 1 1 0 1 1 1 1 Archaeal ATPase AAA_33 PF13671.1 gi|110668659|ref|YP_658470.1| - 0.00049 19.9 0.0 0.00098 19.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|110668659|ref|YP_658470.1| - 0.0019 17.4 0.0 0.0031 16.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|110668659|ref|YP_658470.1| - 0.002 17.9 0.1 0.033 14.0 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.16 gi|110668659|ref|YP_658470.1| - 0.002 17.2 0.0 0.15 11.1 0.0 2.1 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_14 PF13173.1 gi|110668659|ref|YP_658470.1| - 0.0036 17.2 0.0 0.041 13.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|110668659|ref|YP_658470.1| - 0.009 15.1 0.0 0.016 14.3 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_25 PF13481.1 gi|110668659|ref|YP_658470.1| - 0.011 15.2 0.0 0.038 13.3 0.0 2.0 1 1 1 2 2 2 0 AAA domain DUF815 PF05673.8 gi|110668659|ref|YP_658470.1| - 0.011 14.6 0.0 0.018 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_13 PF13166.1 gi|110668659|ref|YP_658470.1| - 0.011 14.2 0.0 0.024 13.1 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|110668659|ref|YP_658470.1| - 0.012 15.9 0.0 0.022 15.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|110668659|ref|YP_658470.1| - 0.012 15.1 0.0 0.033 13.6 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family UPF0079 PF02367.12 gi|110668659|ref|YP_658470.1| - 0.022 14.3 0.0 0.041 13.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Guanylate_kin PF00625.16 gi|110668659|ref|YP_658470.1| - 0.023 14.1 0.0 0.16 11.3 0.0 2.2 2 0 0 2 2 2 0 Guanylate kinase AAA_28 PF13521.1 gi|110668659|ref|YP_658470.1| - 0.031 14.2 0.0 0.16 11.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|110668659|ref|YP_658470.1| - 0.033 13.0 0.0 0.056 12.3 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein ATP_bind_1 PF03029.12 gi|110668659|ref|YP_658470.1| - 0.037 13.5 0.0 0.073 12.5 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_24 PF13479.1 gi|110668659|ref|YP_658470.1| - 0.04 13.4 0.0 0.077 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain Dynamin_N PF00350.18 gi|110668659|ref|YP_658470.1| - 0.05 13.4 0.0 0.11 12.2 0.0 1.5 2 0 0 2 2 1 0 Dynamin family MMR_HSR1 PF01926.18 gi|110668659|ref|YP_658470.1| - 0.051 13.5 0.0 0.068 13.1 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase Rad17 PF03215.10 gi|110668659|ref|YP_658470.1| - 0.052 12.2 0.0 0.059 12.0 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein MobB PF03205.9 gi|110668659|ref|YP_658470.1| - 0.057 13.1 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B MutS_V PF00488.16 gi|110668659|ref|YP_658470.1| - 0.061 12.7 0.0 0.098 12.0 0.0 1.2 1 0 0 1 1 1 0 MutS domain V RNA_helicase PF00910.17 gi|110668659|ref|YP_658470.1| - 0.076 13.1 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Miro PF08477.8 gi|110668659|ref|YP_658470.1| - 0.089 13.2 0.0 0.25 11.8 0.0 1.8 2 0 0 2 2 1 0 Miro-like protein ABC_ATPase PF09818.4 gi|110668659|ref|YP_658470.1| - 0.11 11.1 0.0 0.47 8.9 0.0 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class DBI_PRT PF02277.12 gi|110668659|ref|YP_658470.1| - 0.11 11.5 0.0 0.31 10.1 0.0 1.6 2 0 0 2 2 2 0 Phosphoribosyltransferase IstB_IS21 PF01695.12 gi|110668659|ref|YP_658470.1| - 0.12 11.8 0.0 0.3 10.4 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein NTPase_1 PF03266.10 gi|110668659|ref|YP_658470.1| - 0.13 11.9 0.0 0.46 10.1 0.0 1.8 2 0 0 2 2 2 0 NTPase AAA_30 PF13604.1 gi|110668659|ref|YP_658470.1| - 0.13 11.8 0.0 0.62 9.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|110668659|ref|YP_658470.1| - 0.14 11.0 0.0 0.5 9.1 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain zf-C2H2_3 PF13878.1 gi|110668660|ref|YP_658471.1| - 0.0019 17.7 3.2 0.0028 17.1 2.2 1.3 1 0 0 1 1 1 1 zinc-finger of acetyl-transferase ESCO zf-C2H2_4 PF13894.1 gi|110668660|ref|YP_658471.1| - 0.069 13.5 0.5 0.1 13.0 0.4 1.3 1 0 0 1 1 1 0 C2H2-type zinc finger C1_4 PF07975.7 gi|110668660|ref|YP_658471.1| - 0.077 13.0 1.1 0.093 12.7 0.7 1.1 1 0 0 1 1 1 0 TFIIH C1-like domain GHMP_kinases_N PF00288.21 gi|110668663|ref|YP_658474.1| - 7.4e-10 38.7 2.5 1.3e-09 37.9 0.9 2.1 2 0 0 2 2 2 1 GHMP kinases N terminal domain CM_2 PF01817.16 gi|110668664|ref|YP_658475.1| - 2.5e-18 65.9 2.4 3.1e-18 65.6 1.7 1.1 1 0 0 1 1 1 1 Chorismate mutase type II DUF2461 PF09365.5 gi|110668664|ref|YP_658475.1| - 0.11 11.9 0.0 0.12 11.8 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein (DUF2461) TruB_N PF01509.13 gi|110668665|ref|YP_658476.1| - 9.4e-23 81.0 0.1 7.1e-18 65.1 0.1 3.2 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|110668665|ref|YP_658476.1| - 1.1e-07 31.7 0.0 2.4e-07 30.5 0.0 1.6 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.15 gi|110668665|ref|YP_658476.1| - 0.0028 17.3 0.0 0.0065 16.1 0.0 1.6 1 0 0 1 1 1 1 PUA domain Cytidylate_kin2 PF13189.1 gi|110668666|ref|YP_658477.1| - 2.1e-16 60.3 0.9 7.9e-15 55.2 0.7 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|110668666|ref|YP_658477.1| - 2.3e-14 53.7 0.1 2.9e-14 53.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|110668666|ref|YP_658477.1| - 5.5e-13 49.8 0.5 8.8e-13 49.1 0.3 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|110668666|ref|YP_658477.1| - 1.6e-08 34.5 0.3 9e-07 28.8 0.2 2.2 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|110668666|ref|YP_658477.1| - 2e-08 34.2 0.3 1e-07 31.9 0.1 1.7 1 1 1 2 2 2 1 Adenylate kinase SKI PF01202.17 gi|110668666|ref|YP_658477.1| - 8.3e-06 25.7 1.6 3.4e-05 23.7 1.1 1.9 1 1 0 1 1 1 1 Shikimate kinase AAA_28 PF13521.1 gi|110668666|ref|YP_658477.1| - 0.00011 22.1 0.5 0.00021 21.3 0.3 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|110668666|ref|YP_658477.1| - 0.0039 17.3 0.0 0.0062 16.7 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|110668666|ref|YP_658477.1| - 0.0069 16.1 0.1 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain CPT PF07931.7 gi|110668666|ref|YP_658477.1| - 0.0088 15.6 0.0 0.12 11.9 0.0 2.1 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein AAA_22 PF13401.1 gi|110668666|ref|YP_658477.1| - 0.011 15.9 0.1 0.018 15.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|110668666|ref|YP_658477.1| - 0.013 14.5 0.2 0.036 13.1 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin KTI12 PF08433.5 gi|110668666|ref|YP_658477.1| - 0.024 13.8 0.0 0.037 13.2 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_29 PF13555.1 gi|110668666|ref|YP_658477.1| - 0.03 13.8 0.2 0.06 12.8 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain PRK PF00485.13 gi|110668666|ref|YP_658477.1| - 0.037 13.5 0.0 0.089 12.3 0.0 1.7 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.1 gi|110668666|ref|YP_658477.1| - 0.052 13.5 2.3 0.12 12.3 1.6 1.7 1 1 0 1 1 1 0 AAA ATPase domain RNA_helicase PF00910.17 gi|110668666|ref|YP_658477.1| - 0.052 13.7 0.0 0.086 13.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.9 gi|110668666|ref|YP_658477.1| - 0.059 13.0 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) PIG-L PF02585.12 gi|110668666|ref|YP_658477.1| - 0.088 13.3 0.0 0.15 12.5 0.0 1.4 1 0 0 1 1 1 0 GlcNAc-PI de-N-acetylase AAA_25 PF13481.1 gi|110668666|ref|YP_658477.1| - 0.097 12.0 0.7 0.16 11.3 0.5 1.6 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|110668666|ref|YP_658477.1| - 0.12 12.7 0.0 0.17 12.1 0.0 1.6 1 1 0 1 1 1 0 ABC transporter AAA_30 PF13604.1 gi|110668666|ref|YP_658477.1| - 0.38 10.3 4.6 1.3 8.5 0.2 2.5 1 1 1 3 3 3 0 AAA domain DUF106 PF01956.11 gi|110668667|ref|YP_658478.1| - 2.2e-45 154.2 0.8 2.9e-45 153.7 0.6 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF106 60KD_IMP PF02096.15 gi|110668667|ref|YP_658478.1| - 7.1e-06 25.8 0.4 1.1e-05 25.2 0.3 1.3 1 0 0 1 1 1 1 60Kd inner membrane protein YgaB PF14182.1 gi|110668667|ref|YP_658478.1| - 0.075 13.2 2.2 0.12 12.5 1.6 1.3 1 0 0 1 1 1 0 YgaB-like protein FA_desaturase PF00487.19 gi|110668667|ref|YP_658478.1| - 0.12 11.7 0.5 0.3 10.5 0.1 1.7 2 0 0 2 2 2 0 Fatty acid desaturase ADK PF00406.17 gi|110668668|ref|YP_658479.1| - 2.5e-41 141.0 0.0 3e-41 140.7 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|110668668|ref|YP_658479.1| - 3.3e-18 65.0 0.8 5.5e-18 64.3 0.5 1.4 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_33 PF13671.1 gi|110668668|ref|YP_658479.1| - 9.8e-09 35.2 0.0 1.9e-08 34.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|110668668|ref|YP_658479.1| - 1e-08 35.9 0.0 1.6e-08 35.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|110668668|ref|YP_658479.1| - 1.4e-07 31.9 0.0 2.6e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain TF_Zn_Ribbon PF08271.7 gi|110668668|ref|YP_658479.1| - 2.6e-05 23.4 2.7 5.8e-05 22.3 1.9 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding RuvB_N PF05496.7 gi|110668668|ref|YP_658479.1| - 0.0002 20.4 0.0 0.0003 19.9 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Prok-RING_1 PF14446.1 gi|110668668|ref|YP_658479.1| - 0.00037 20.1 3.0 0.054 13.2 0.2 2.2 2 0 0 2 2 2 2 Prokaryotic RING finger family 1 DZR PF12773.2 gi|110668668|ref|YP_658479.1| - 0.0004 20.1 0.5 0.00067 19.4 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon SKI PF01202.17 gi|110668668|ref|YP_658479.1| - 0.0012 18.7 0.3 0.0048 16.7 0.1 2.0 2 1 0 2 2 2 1 Shikimate kinase zf-IS66 PF13005.2 gi|110668668|ref|YP_658479.1| - 0.0014 18.5 4.2 0.12 12.4 0.7 2.4 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 A2L_zn_ribbon PF08792.5 gi|110668668|ref|YP_658479.1| - 0.0019 17.6 0.4 0.12 11.8 0.0 2.4 2 0 0 2 2 2 1 A2L zinc ribbon domain AAA_5 PF07728.9 gi|110668668|ref|YP_658479.1| - 0.0077 15.9 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) PduV-EutP PF10662.4 gi|110668668|ref|YP_658479.1| - 0.008 15.6 0.0 0.013 14.9 0.0 1.4 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Zn_ribbon_recom PF13408.1 gi|110668668|ref|YP_658479.1| - 0.011 15.9 0.0 4.3 7.6 0.0 2.7 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain MMR_HSR1 PF01926.18 gi|110668668|ref|YP_658479.1| - 0.014 15.3 0.0 0.026 14.4 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase Zeta_toxin PF06414.7 gi|110668668|ref|YP_658479.1| - 0.016 14.2 0.0 0.035 13.2 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.24 gi|110668668|ref|YP_658479.1| - 0.025 14.7 0.1 0.051 13.7 0.0 1.7 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) zf-C4_Topoisom PF01396.14 gi|110668668|ref|YP_658479.1| - 0.041 13.3 0.4 8.1 6.0 0.0 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger GFA PF04828.9 gi|110668668|ref|YP_658479.1| - 0.05 13.5 0.5 1.1 9.2 0.0 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Mg_chelatase PF01078.16 gi|110668668|ref|YP_658479.1| - 0.055 12.6 0.0 0.081 12.0 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI zf-ribbon_3 PF13248.1 gi|110668668|ref|YP_658479.1| - 0.067 12.4 3.2 0.39 9.9 2.4 2.0 1 1 1 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|110668668|ref|YP_658479.1| - 0.067 12.8 0.4 0.14 11.8 0.3 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2H2_3 PF13878.1 gi|110668668|ref|YP_658479.1| - 0.079 12.5 0.2 1.4 8.5 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO AAA_22 PF13401.1 gi|110668668|ref|YP_658479.1| - 0.087 12.9 0.0 0.16 12.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain Nudix_N_2 PF14803.1 gi|110668668|ref|YP_658479.1| - 0.095 12.4 3.0 7.6 6.3 0.2 2.4 2 0 0 2 2 2 0 Nudix N-terminal Ogr_Delta PF04606.7 gi|110668668|ref|YP_658479.1| - 0.15 11.7 0.3 3.4 7.3 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DUF2387 PF09526.5 gi|110668668|ref|YP_658479.1| - 0.23 11.3 2.0 0.58 10.1 1.4 1.6 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) zinc_ribbon_2 PF13240.1 gi|110668668|ref|YP_658479.1| - 0.37 10.3 2.6 4.3 6.9 1.8 2.2 1 1 0 1 1 1 0 zinc-ribbon domain RRN7 PF11781.3 gi|110668668|ref|YP_658479.1| - 0.73 9.3 3.8 3 7.4 0.3 2.3 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 UPF0547 PF10571.4 gi|110668668|ref|YP_658479.1| - 0.79 9.4 4.5 4.4 7.0 3.1 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF35_N PF12172.3 gi|110668668|ref|YP_658479.1| - 1.9 8.5 4.4 23 5.0 3.0 2.2 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Abhydrolase_6 PF12697.2 gi|110668670|ref|YP_658481.1| - 2.9e-36 125.4 4.7 3.7e-36 125.1 3.2 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|110668670|ref|YP_658481.1| - 3e-24 85.8 0.4 4.6e-24 85.2 0.3 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|110668670|ref|YP_658481.1| - 3.3e-18 65.8 0.0 1.4e-17 63.8 0.0 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|110668670|ref|YP_658481.1| - 9.4e-06 25.0 0.0 0.0023 17.2 0.0 2.6 2 1 0 2 2 2 2 Dienelactone hydrolase family Hydrolase_4 PF12146.3 gi|110668670|ref|YP_658481.1| - 8.6e-05 22.3 0.1 0.00015 21.5 0.0 1.4 1 0 0 1 1 1 1 Putative lysophospholipase Peptidase_S9 PF00326.16 gi|110668670|ref|YP_658481.1| - 0.0014 17.8 0.7 0.04 13.1 0.1 2.3 2 1 0 2 2 2 1 Prolyl oligopeptidase family Abhydrolase_4 PF08386.5 gi|110668670|ref|YP_658481.1| - 0.005 16.7 0.1 0.0094 15.8 0.1 1.4 1 0 0 1 1 1 1 TAP-like protein FSH1 PF03959.8 gi|110668670|ref|YP_658481.1| - 0.016 14.6 0.0 0.027 13.9 0.0 1.5 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Ndr PF03096.9 gi|110668670|ref|YP_658481.1| - 0.03 12.7 0.0 0.064 11.7 0.0 1.5 2 0 0 2 2 2 0 Ndr family HopW1-1 PF15457.1 gi|110668670|ref|YP_658481.1| - 0.092 11.7 0.1 0.13 11.2 0.1 1.2 1 0 0 1 1 1 0 Type III T3SS secreted effector HopW1-1/HopPmaA adh_short PF00106.20 gi|110668672|ref|YP_658483.1| - 7.7e-22 77.9 0.2 1.6e-21 76.9 0.2 1.5 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|110668672|ref|YP_658483.1| - 2.1e-08 34.2 0.0 3.1e-08 33.7 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|110668672|ref|YP_658483.1| - 0.00042 19.8 0.0 0.00049 19.6 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.5 gi|110668672|ref|YP_658483.1| - 0.0078 15.8 0.1 0.086 12.4 0.0 2.0 1 1 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|110668672|ref|YP_658483.1| - 0.0079 16.2 0.5 0.017 15.1 0.4 1.5 1 1 0 1 1 1 1 NADH(P)-binding THF_DHG_CYH_C PF02882.14 gi|110668672|ref|YP_658483.1| - 0.15 11.1 0.1 0.23 10.5 0.1 1.4 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NUDIX PF00293.23 gi|110668673|ref|YP_658484.1| - 1.5e-08 34.3 0.5 1.9e-08 34.0 0.4 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|110668673|ref|YP_658484.1| - 0.0083 15.5 0.3 0.018 14.4 0.2 1.7 1 1 0 1 1 1 1 NUDIX domain Sigma70_r3 PF04539.11 gi|110668673|ref|YP_658484.1| - 0.1 12.5 0.9 1.6 8.6 0.1 2.5 3 0 0 3 3 3 0 Sigma-70 region 3 HTH_AsnC-type PF13404.1 gi|110668674|ref|YP_658485.1| - 1.3e-17 63.0 1.3 2.9e-17 61.9 0.9 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|110668674|ref|YP_658485.1| - 1.3e-16 59.7 0.5 2.4e-16 58.8 0.1 1.7 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|110668674|ref|YP_658485.1| - 1.5e-10 40.6 0.8 2.6e-10 39.8 0.5 1.4 1 0 0 1 1 1 1 AsnC family HTH_20 PF12840.2 gi|110668674|ref|YP_658485.1| - 2.8e-06 27.0 0.0 4.8e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|110668674|ref|YP_658485.1| - 1.4e-05 24.5 0.0 2.6e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|110668674|ref|YP_658485.1| - 3.2e-05 23.3 0.1 0.00065 19.1 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 MarR PF01047.17 gi|110668674|ref|YP_658485.1| - 3.8e-05 23.3 0.6 0.00017 21.2 0.0 2.2 3 0 0 3 3 2 1 MarR family MarR_2 PF12802.2 gi|110668674|ref|YP_658485.1| - 4.4e-05 23.0 0.5 8e-05 22.2 0.1 1.6 2 0 0 2 2 1 1 MarR family HTH_11 PF08279.7 gi|110668674|ref|YP_658485.1| - 0.00014 21.4 0.1 0.00032 20.2 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|110668674|ref|YP_658485.1| - 0.00023 20.6 0.1 0.00058 19.4 0.0 1.7 2 0 0 2 2 1 1 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.1 gi|110668674|ref|YP_658485.1| - 0.00037 19.6 0.4 0.0008 18.5 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_DeoR PF08220.7 gi|110668674|ref|YP_658485.1| - 0.0007 19.0 0.3 0.0017 17.8 0.2 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain GntR PF00392.16 gi|110668674|ref|YP_658485.1| - 0.0011 18.3 0.2 0.0025 17.2 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_29 PF13551.1 gi|110668674|ref|YP_658485.1| - 0.0035 17.4 0.0 0.0063 16.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_27 PF13463.1 gi|110668674|ref|YP_658485.1| - 0.0049 17.1 0.0 0.011 16.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain RPA_C PF08784.6 gi|110668674|ref|YP_658485.1| - 0.0049 17.2 0.0 0.01 16.2 0.0 1.5 1 0 0 1 1 1 1 Replication protein A C terminal TrmB PF01978.14 gi|110668674|ref|YP_658485.1| - 0.0051 16.4 0.1 0.11 12.1 0.0 2.1 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB GYD PF08734.6 gi|110668674|ref|YP_658485.1| - 0.006 16.2 0.5 0.034 13.8 0.2 2.2 1 1 0 1 1 1 1 GYD domain Sigma70_r4 PF04545.11 gi|110668674|ref|YP_658485.1| - 0.0079 15.4 1.0 0.016 14.4 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 PaaX PF07848.7 gi|110668674|ref|YP_658485.1| - 0.009 15.9 0.1 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 PaaX-like protein HTH_28 PF13518.1 gi|110668674|ref|YP_658485.1| - 0.0092 15.9 0.0 0.018 15.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|110668674|ref|YP_658485.1| - 0.012 15.0 0.1 0.045 13.2 0.0 1.9 1 1 1 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|110668674|ref|YP_658485.1| - 0.013 15.6 0.0 0.24 11.5 0.0 2.1 1 1 1 2 2 2 0 Transcriptional regulator HTH_Mga PF08280.6 gi|110668674|ref|YP_658485.1| - 0.026 14.2 0.0 0.043 13.5 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain DUF4191 PF13829.1 gi|110668674|ref|YP_658485.1| - 0.028 13.5 0.6 0.084 11.9 0.2 1.8 1 1 0 2 2 2 0 Domain of unknown function (DUF4191) DUF746 PF05344.6 gi|110668674|ref|YP_658485.1| - 0.035 13.6 0.1 0.15 11.5 0.0 2.0 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_Crp_2 PF13545.1 gi|110668674|ref|YP_658485.1| - 0.046 13.5 0.1 0.14 11.9 0.1 1.9 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.15 gi|110668674|ref|YP_658485.1| - 0.046 13.3 0.0 0.087 12.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Stk19 PF10494.4 gi|110668674|ref|YP_658485.1| - 0.056 12.8 0.3 0.06 12.7 0.2 1.2 1 1 0 1 1 1 0 Serine-threonine protein kinase 19 GerE PF00196.14 gi|110668674|ref|YP_658485.1| - 0.059 12.6 0.2 0.23 10.7 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_38 PF13936.1 gi|110668674|ref|YP_658485.1| - 0.12 12.0 0.3 0.29 10.7 0.1 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain CPSase_sm_chain PF00988.17 gi|110668675|ref|YP_658486.1| - 2.6e-38 130.4 0.0 2.3e-37 127.4 0.0 2.2 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|110668675|ref|YP_658486.1| - 3.1e-35 121.3 0.0 1.8e-34 118.8 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|110668675|ref|YP_658486.1| - 3.6e-08 33.1 0.1 1.3e-05 24.7 0.0 2.3 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|110668675|ref|YP_658486.1| - 0.047 13.1 0.0 0.092 12.1 0.0 1.5 1 0 0 1 1 1 0 DJ-1/PfpI family Acetyltransf_1 PF00583.19 gi|110668676|ref|YP_658487.1| - 8.5e-10 38.5 0.0 1.7e-09 37.5 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|110668676|ref|YP_658487.1| - 7.1e-06 26.2 0.0 1.6e-05 25.0 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|110668676|ref|YP_658487.1| - 0.00017 21.3 0.0 0.00036 20.2 0.0 1.6 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|110668676|ref|YP_658487.1| - 0.00059 19.9 0.2 0.0026 17.8 0.1 2.2 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain KR PF08659.5 gi|110668676|ref|YP_658487.1| - 0.001 18.7 0.4 1.6 8.3 0.0 2.6 3 0 0 3 3 3 2 KR domain Acetyltransf_7 PF13508.1 gi|110668676|ref|YP_658487.1| - 0.0013 18.8 0.0 0.0026 17.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain adh_short PF00106.20 gi|110668676|ref|YP_658487.1| - 0.016 15.1 1.1 1.5 8.7 0.1 2.3 2 0 0 2 2 2 0 short chain dehydrogenase Acetyltransf_CG PF14542.1 gi|110668676|ref|YP_658487.1| - 0.031 14.1 0.0 0.074 12.9 0.0 1.6 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|110668676|ref|YP_658487.1| - 0.037 13.8 0.0 0.1 12.4 0.0 1.8 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Asparaginase PF00710.15 gi|110668677|ref|YP_658488.1| - 1.8e-85 286.5 2.5 2.3e-85 286.2 1.7 1.1 1 0 0 1 1 1 1 Asparaginase HTH_5 PF01022.15 gi|110668679|ref|YP_658490.1| - 6.5e-15 54.5 0.1 1.6e-14 53.3 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|110668679|ref|YP_658490.1| - 1.6e-13 50.1 1.2 4.6e-13 48.7 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|110668679|ref|YP_658490.1| - 3.6e-10 39.3 0.0 3.8e-06 26.5 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|110668679|ref|YP_658490.1| - 7.7e-09 35.0 0.2 8.2e-07 28.6 0.1 2.7 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|110668679|ref|YP_658490.1| - 4.5e-08 32.6 0.1 2e-05 24.2 0.0 2.6 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|110668679|ref|YP_658490.1| - 1.7e-07 30.5 0.3 4.6e-07 29.1 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|110668679|ref|YP_658490.1| - 2.1e-06 27.9 0.2 6.4e-05 23.1 0.0 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|110668679|ref|YP_658490.1| - 4e-05 23.4 0.0 0.00069 19.4 0.0 2.4 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|110668679|ref|YP_658490.1| - 8.8e-05 22.0 0.0 0.00025 20.5 0.0 1.8 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.15 gi|110668679|ref|YP_658490.1| - 0.00014 21.9 0.0 0.0082 16.2 0.0 2.4 2 0 0 2 2 2 1 Transcriptional regulator DUF4423 PF14394.1 gi|110668679|ref|YP_658490.1| - 0.00047 19.7 0.1 0.38 10.2 0.0 2.8 3 1 1 4 4 4 2 Domain of unknown function (DUF4423) PadR PF03551.9 gi|110668679|ref|YP_658490.1| - 0.00057 19.5 0.5 0.007 16.1 0.1 2.8 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|110668679|ref|YP_658490.1| - 0.00074 19.2 0.0 1 9.2 0.0 2.8 3 0 0 3 3 3 2 Winged helix-turn-helix HTH_Crp_2 PF13545.1 gi|110668679|ref|YP_658490.1| - 0.0023 17.6 0.0 0.02 14.6 0.0 2.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain DDRGK PF09756.4 gi|110668679|ref|YP_658490.1| - 0.0087 15.4 1.4 0.17 11.2 0.0 2.3 2 0 0 2 2 2 1 DDRGK domain DUF2513 PF10711.4 gi|110668679|ref|YP_658490.1| - 0.014 15.4 0.0 0.044 13.8 0.0 1.8 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_CodY PF08222.6 gi|110668679|ref|YP_658490.1| - 0.018 14.3 0.0 0.21 10.9 0.0 2.2 2 0 0 2 2 2 0 CodY helix-turn-helix domain HTH_10 PF04967.7 gi|110668679|ref|YP_658490.1| - 0.022 14.3 0.0 0.055 13.0 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain HTH_23 PF13384.1 gi|110668679|ref|YP_658490.1| - 0.022 14.3 0.0 0.07 12.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain Cucumo_2B PF03263.8 gi|110668679|ref|YP_658490.1| - 0.023 14.9 3.9 0.93 9.8 0.1 2.6 2 1 1 3 3 3 0 Cucumovirus protein 2B Cas_Cas1 PF01867.11 gi|110668679|ref|YP_658490.1| - 0.04 12.9 0.3 0.069 12.2 0.2 1.4 1 0 0 1 1 1 0 CRISPR associated protein Cas1 ArsR PF09824.4 gi|110668679|ref|YP_658490.1| - 0.043 13.1 0.0 0.17 11.2 0.0 1.8 2 0 0 2 2 2 0 ArsR transcriptional regulator HTH_IclR PF09339.5 gi|110668679|ref|YP_658490.1| - 0.1 12.1 0.3 1.9 8.1 0.0 3.2 4 0 0 4 4 4 0 IclR helix-turn-helix domain DUF1405 PF07187.6 gi|110668680|ref|YP_658491.1| - 8.5e-41 139.4 11.3 1.1e-40 139.0 7.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) Metalloenzyme PF01676.13 gi|110668681|ref|YP_658492.1| - 1.3e-79 267.1 1.7 1.5e-79 266.9 1.2 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily iPGM_N PF06415.8 gi|110668681|ref|YP_658492.1| - 3.4e-75 252.2 0.1 4.8e-75 251.7 0.1 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Phosphodiest PF01663.17 gi|110668681|ref|YP_658492.1| - 1.2e-08 34.6 0.1 6.2e-08 32.3 0.0 2.1 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|110668681|ref|YP_658492.1| - 0.00021 20.9 0.1 0.00045 19.9 0.0 1.5 1 0 0 1 1 1 1 PglZ domain MAP1B_neuraxin PF00414.12 gi|110668681|ref|YP_658492.1| - 0.44 9.9 2.2 0.74 9.2 0.0 2.6 3 0 0 3 3 3 0 Neuraxin and MAP1B repeat SNARE_assoc PF09335.6 gi|110668682|ref|YP_658493.1| - 1.2e-10 41.6 4.6 1.2e-10 41.6 3.2 2.3 2 1 0 2 2 2 1 SNARE associated Golgi protein Peptidase_C3 PF00548.15 gi|110668684|ref|YP_658495.1| - 0.021 14.6 0.2 0.023 14.5 0.2 1.1 1 0 0 1 1 1 0 3C cysteine protease (picornain 3C) Atg14 PF10186.4 gi|110668684|ref|YP_658495.1| - 0.028 13.3 3.6 0.029 13.3 2.5 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Wx5_PLAF3D7 PF09688.5 gi|110668684|ref|YP_658495.1| - 0.068 13.1 1.9 0.082 12.8 1.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (Wx5_PLAF3D7) CCDC92 PF14916.1 gi|110668684|ref|YP_658495.1| - 0.24 11.0 7.5 0.14 11.7 3.4 2.0 1 1 2 3 3 3 0 Coiled-coil domain of unknown function ABC_transp_aux PF09822.4 gi|110668685|ref|YP_658496.1| - 2.5e-07 30.4 0.0 3.3e-07 30.0 0.0 1.3 1 1 0 1 1 1 1 ABC-type uncharacterized transport system DUF4350 PF14258.1 gi|110668685|ref|YP_658496.1| - 2.1e-05 24.6 0.6 7.6e-05 22.8 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) Peptidase_S49 PF01343.13 gi|110668686|ref|YP_658497.1| - 1.5e-18 67.0 1.4 3.2e-17 62.7 0.9 2.3 1 1 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.18 gi|110668686|ref|YP_658497.1| - 0.00098 18.8 0.1 0.004 16.8 0.0 1.9 2 0 0 2 2 2 1 Clp protease SDH_sah PF01972.11 gi|110668686|ref|YP_658497.1| - 0.014 14.2 0.0 0.019 13.7 0.0 1.1 1 0 0 1 1 1 0 Serine dehydrogenase proteinase OKR_DC_1_N PF03709.10 gi|110668686|ref|YP_658497.1| - 0.015 15.3 0.0 0.029 14.4 0.0 1.4 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain Peptidase_S49_N PF08496.5 gi|110668686|ref|YP_658497.1| - 0.4 10.4 0.0 0.4 10.4 0.0 1.7 2 0 0 2 2 2 0 Peptidase family S49 N-terminal HAD_2 PF13419.1 gi|110668687|ref|YP_658498.1| - 2.2e-12 47.5 0.2 3.8e-07 30.5 0.0 2.1 1 1 1 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|110668687|ref|YP_658498.1| - 6e-06 26.8 0.2 0.0011 19.4 0.1 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|110668687|ref|YP_658498.1| - 0.0033 17.0 0.0 0.0067 16.1 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|110668687|ref|YP_658498.1| - 0.018 15.2 0.3 0.11 12.6 0.2 1.9 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF373 PF04123.8 gi|110668687|ref|YP_658498.1| - 0.05 12.6 0.1 0.11 11.4 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF373) zf-ribbon_3 PF13248.1 gi|110668688|ref|YP_658499.1| - 0.013 14.7 0.1 0.013 14.7 0.0 1.9 3 0 0 3 3 3 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|110668688|ref|YP_658499.1| - 0.017 14.9 0.1 0.71 9.7 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_2 PF13240.1 gi|110668688|ref|YP_658499.1| - 0.028 13.9 1.6 0.059 12.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Acetone_carb_G PF08882.6 gi|110668688|ref|YP_658499.1| - 0.055 13.4 0.6 0.12 12.3 0.4 1.5 1 0 0 1 1 1 0 Acetone carboxylase gamma subunit DUF2296 PF10058.4 gi|110668688|ref|YP_658499.1| - 0.063 13.0 0.5 0.16 11.7 0.2 1.8 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Desulfoferrod_N PF06397.7 gi|110668688|ref|YP_658499.1| - 0.13 11.6 3.4 0.1 12.0 0.9 1.8 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain TF_Zn_Ribbon PF08271.7 gi|110668688|ref|YP_658499.1| - 0.15 11.4 0.8 0.36 10.1 0.2 1.9 2 0 0 2 2 2 0 TFIIB zinc-binding THF_DHG_CYH_C PF02882.14 gi|110668689|ref|YP_658500.1| - 1.3e-66 222.6 3.5 1.3e-66 222.6 2.4 1.4 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|110668689|ref|YP_658500.1| - 1e-38 131.9 0.1 1.6e-38 131.3 0.1 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SHMT PF00464.14 gi|110668690|ref|YP_658501.1| - 4.4e-150 499.5 0.1 5.3e-150 499.2 0.1 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|110668690|ref|YP_658501.1| - 6.2e-11 41.8 0.0 1.1e-10 41.0 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|110668690|ref|YP_658501.1| - 2.2e-06 27.0 0.0 6e-06 25.6 0.0 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|110668690|ref|YP_658501.1| - 0.00059 18.9 1.0 0.001 18.2 0.5 1.4 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family YcaO PF02624.11 gi|110668692|ref|YP_658503.1| - 1.7e-63 215.1 0.9 2.3e-63 214.7 0.6 1.2 1 0 0 1 1 1 1 YcaO-like family DUF4318 PF14201.1 gi|110668692|ref|YP_658503.1| - 0.077 12.8 0.0 27 4.6 0.0 3.2 4 0 0 4 4 4 0 Domain of unknown function (DUF4318) DUF63 PF01889.12 gi|110668693|ref|YP_658504.1| - 1.2e-37 130.5 13.4 5.9e-37 128.2 8.2 2.4 2 1 0 2 2 2 1 Membrane protein of unknown function DUF63 DUF4345 PF14248.1 gi|110668693|ref|YP_658504.1| - 0.019 14.4 16.9 0.02 14.3 0.2 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4345) Inositol_P PF00459.20 gi|110668694|ref|YP_658505.1| - 5.9e-57 193.0 4.3 6.6e-57 192.8 3.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|110668694|ref|YP_658505.1| - 0.015 14.1 0.1 0.022 13.6 0.1 1.2 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase Usp PF00582.21 gi|110668695|ref|YP_658506.1| - 9.8e-29 100.3 0.2 1.1e-28 100.1 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family IPT PF01745.11 gi|110668695|ref|YP_658506.1| - 0.099 11.7 0.0 0.12 11.5 0.0 1.1 1 0 0 1 1 1 0 Isopentenyl transferase DUF77 PF01910.12 gi|110668696|ref|YP_658507.1| - 3.2e-22 77.9 0.6 4e-22 77.7 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF77 MCH PF02289.11 gi|110668697|ref|YP_658508.1| - 3.1e-94 315.5 0.2 3.5e-94 315.3 0.1 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Peptidase_M48 PF01435.13 gi|110668698|ref|YP_658509.1| - 3.9e-40 137.8 0.0 5.3e-40 137.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|110668698|ref|YP_658509.1| - 0.0041 16.1 1.6 0.0043 16.0 0.0 1.8 2 0 0 2 2 2 1 BlaR1 peptidase M56 DUF2268 PF10026.4 gi|110668698|ref|YP_658509.1| - 0.014 14.7 0.0 0.026 13.8 0.0 1.3 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) DUF45 PF01863.12 gi|110668698|ref|YP_658509.1| - 0.15 11.8 0.0 0.3 10.8 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function DUF45 GTP_EFTU PF00009.22 gi|110668699|ref|YP_658510.1| - 5.2e-35 120.5 0.1 7.6e-35 120.0 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|110668699|ref|YP_658510.1| - 1.1e-16 60.7 0.0 2.5e-16 59.6 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|110668699|ref|YP_658510.1| - 1.5e-10 41.0 0.4 1.5e-10 41.0 0.3 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|110668699|ref|YP_658510.1| - 0.0049 16.8 0.0 0.01 15.8 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|110668699|ref|YP_658510.1| - 0.0065 16.0 0.8 0.06 12.8 0.0 2.2 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein DnaJ PF00226.26 gi|110668700|ref|YP_658511.1| - 4.7e-16 58.2 0.0 6.6e-16 57.7 0.0 1.2 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.1 gi|110668700|ref|YP_658511.1| - 3.6e-05 23.0 0.0 0.00016 20.9 0.0 1.9 2 0 0 2 2 2 1 A repeated domain in UCH-protein IncA PF04156.9 gi|110668700|ref|YP_658511.1| - 3 7.3 4.8 6.7 6.2 3.4 1.4 1 1 0 1 1 1 0 IncA protein Zn_Tnp_IS1595 PF12760.2 gi|110668703|ref|YP_658514.1| - 0.00022 20.9 0.6 0.00027 20.6 0.4 1.1 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|110668703|ref|YP_658514.1| - 0.0004 20.5 1.1 0.52 10.7 0.0 2.1 1 1 1 2 2 2 2 Zinc-finger double domain RNA_POL_M_15KD PF02150.11 gi|110668703|ref|YP_658514.1| - 0.00081 19.0 0.1 0.0027 17.3 0.1 1.8 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit Rubredoxin PF00301.15 gi|110668703|ref|YP_658514.1| - 0.00088 19.0 0.3 0.89 9.4 0.0 2.2 2 0 0 2 2 2 2 Rubredoxin Zn-ribbon_8 PF09723.5 gi|110668703|ref|YP_658514.1| - 0.0013 18.5 0.2 0.52 10.3 0.0 2.1 2 0 0 2 2 2 2 Zinc ribbon domain zf-C2H2 PF00096.21 gi|110668703|ref|YP_658514.1| - 0.0049 17.1 0.5 0.69 10.3 0.1 2.2 2 0 0 2 2 2 1 Zinc finger, C2H2 type Lar_restr_allev PF14354.1 gi|110668703|ref|YP_658514.1| - 0.029 14.6 0.3 0.037 14.3 0.2 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar DnaJ_CXXCXGXG PF00684.14 gi|110668703|ref|YP_658514.1| - 0.06 13.4 0.1 0.073 13.1 0.1 1.1 1 0 0 1 1 1 0 DnaJ central domain DUF2082 PF09855.4 gi|110668703|ref|YP_658514.1| - 0.064 13.1 0.1 3.3 7.6 0.0 2.1 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-IS66 PF13005.2 gi|110668703|ref|YP_658514.1| - 0.065 13.2 0.7 2.4 8.2 0.1 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Prok-RING_1 PF14446.1 gi|110668703|ref|YP_658514.1| - 0.079 12.7 1.3 3 7.6 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-RING_3 PF14369.1 gi|110668703|ref|YP_658514.1| - 0.082 12.9 0.4 10 6.2 0.1 2.2 2 0 0 2 2 2 0 zinc-finger OrfB_Zn_ribbon PF07282.6 gi|110668703|ref|YP_658514.1| - 0.13 11.8 0.3 11 5.7 0.1 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain HypA PF01155.14 gi|110668703|ref|YP_658514.1| - 0.16 11.6 0.2 4.7 6.9 0.0 1.9 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-trcl PF13451.1 gi|110668703|ref|YP_658514.1| - 0.17 11.5 1.0 12 5.6 0.0 2.1 2 0 0 2 2 2 0 Probable zinc-binding domain zf-Mss51 PF13824.1 gi|110668703|ref|YP_658514.1| - 0.22 11.4 4.1 0.26 11.1 0.5 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 A2L_zn_ribbon PF08792.5 gi|110668703|ref|YP_658514.1| - 0.36 10.3 3.6 6.8 6.2 0.1 2.4 2 1 0 2 2 2 0 A2L zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|110668703|ref|YP_658514.1| - 0.36 10.6 2.2 4.7 7.0 0.1 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon ADK_lid PF05191.9 gi|110668703|ref|YP_658514.1| - 0.39 10.4 2.0 2.2 8.0 1.4 1.9 1 1 0 1 1 1 0 Adenylate kinase, active site lid UPF0547 PF10571.4 gi|110668703|ref|YP_658514.1| - 0.82 9.4 6.9 3.5 7.3 0.5 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF4379 PF14311.1 gi|110668703|ref|YP_658514.1| - 1.1 9.1 5.3 0.64 9.8 0.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4379) DUF3797 PF12677.2 gi|110668703|ref|YP_658514.1| - 1.3 8.6 3.5 15 5.2 0.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-TFIIB PF13453.1 gi|110668703|ref|YP_658514.1| - 7.4 5.8 6.7 1.5 8.0 0.7 2.4 2 1 1 3 3 3 0 Transcription factor zinc-finger ABC_tran PF00005.22 gi|110668704|ref|YP_658515.1| - 9.2e-31 106.9 0.0 1.2e-30 106.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110668704|ref|YP_658515.1| - 2e-12 47.6 0.0 2.7e-06 27.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|110668704|ref|YP_658515.1| - 7.2e-06 25.4 0.0 1.4e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|110668704|ref|YP_658515.1| - 4e-05 22.9 0.2 0.0022 17.2 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|110668704|ref|YP_658515.1| - 0.00024 21.2 0.2 0.16 12.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|110668704|ref|YP_658515.1| - 0.0003 21.1 0.1 0.0005 20.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|110668704|ref|YP_658515.1| - 0.0045 16.5 0.1 0.018 14.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|110668704|ref|YP_658515.1| - 0.0082 15.5 0.0 0.037 13.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|110668704|ref|YP_658515.1| - 0.014 14.8 0.1 0.4 10.0 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain MutS_V PF00488.16 gi|110668704|ref|YP_658515.1| - 0.027 13.9 0.0 0.042 13.2 0.0 1.2 1 0 0 1 1 1 0 MutS domain V AAA_17 PF13207.1 gi|110668704|ref|YP_658515.1| - 0.051 14.3 0.0 0.099 13.4 0.0 1.7 2 0 0 2 2 1 0 AAA domain DUF258 PF03193.11 gi|110668704|ref|YP_658515.1| - 0.067 12.3 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|110668704|ref|YP_658515.1| - 0.073 12.0 0.0 1.2 8.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_14 PF13173.1 gi|110668704|ref|YP_658515.1| - 0.076 12.9 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|110668704|ref|YP_658515.1| - 0.088 11.8 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_16 PF13191.1 gi|110668704|ref|YP_658515.1| - 0.09 12.7 0.0 0.51 10.2 0.0 2.0 1 1 0 1 1 1 0 AAA ATPase domain ABC_ATPase PF09818.4 gi|110668704|ref|YP_658515.1| - 0.099 11.2 0.6 6.3 5.2 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class SbcCD_C PF13558.1 gi|110668704|ref|YP_658515.1| - 0.12 12.2 1.0 0.74 9.7 0.7 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Dynamin_N PF00350.18 gi|110668704|ref|YP_658515.1| - 0.14 11.9 0.0 0.34 10.6 0.0 1.6 1 1 0 1 1 1 0 Dynamin family T2SE PF00437.15 gi|110668704|ref|YP_658515.1| - 0.14 11.0 0.1 1.1 8.1 0.0 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein ABC_tran PF00005.22 gi|110668705|ref|YP_658516.1| - 2.9e-25 89.1 0.2 2.2e-12 47.4 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|110668705|ref|YP_658516.1| - 9.5e-12 45.4 0.3 1.8e-05 24.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|110668705|ref|YP_658516.1| - 7.7e-09 35.0 0.0 1.3e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.14 gi|110668705|ref|YP_658516.1| - 9.6e-05 21.7 0.1 0.14 11.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|110668705|ref|YP_658516.1| - 0.0007 19.9 1.7 0.0012 19.2 1.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|110668705|ref|YP_658516.1| - 0.0012 18.3 0.5 0.0033 16.9 0.1 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain MukB PF04310.7 gi|110668705|ref|YP_658516.1| - 0.017 14.4 0.2 0.027 13.7 0.1 1.3 1 0 0 1 1 1 0 MukB N-terminal BPD_transp_2 PF02653.11 gi|110668706|ref|YP_658517.1| - 1.3e-38 132.5 73.9 1.3e-20 73.4 32.2 3.2 2 1 1 3 3 3 2 Branched-chain amino acid transport system / permease component SP_C-Propep PF08999.5 gi|110668706|ref|YP_658517.1| - 2.4 7.7 5.4 40 3.7 0.6 3.8 4 0 0 4 4 4 0 Surfactant protein C, N terminal propeptide BPD_transp_2 PF02653.11 gi|110668707|ref|YP_658518.1| - 1.4e-25 89.8 63.3 1.3e-21 76.7 43.9 3.1 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.1 gi|110668708|ref|YP_658519.1| - 1.4e-40 139.7 11.0 1.7e-40 139.4 7.6 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|110668708|ref|YP_658519.1| - 3e-34 118.3 0.1 4.4e-34 117.8 0.1 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|110668708|ref|YP_658519.1| - 5.1e-14 51.8 0.1 1.2e-10 40.7 0.0 2.4 2 0 0 2 2 2 2 Periplasmic binding protein domain TAT_signal PF10518.4 gi|110668708|ref|YP_658519.1| - 0.0073 16.2 1.5 0.027 14.4 1.0 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence 2TM PF13239.1 gi|110668710|ref|YP_658521.1| - 0.034 14.2 0.2 0.039 14.0 0.1 1.1 1 0 0 1 1 1 0 2TM domain Claudin_2 PF13903.1 gi|110668711|ref|YP_658522.1| - 0.039 13.6 1.2 0.044 13.4 0.8 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF3262 PF11660.3 gi|110668711|ref|YP_658522.1| - 0.13 12.3 3.1 0.28 11.3 2.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3262) HATPase_c PF02518.21 gi|110668713|ref|YP_658524.1| - 1.5e-18 66.5 0.1 3.5e-18 65.3 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|110668713|ref|YP_658524.1| - 4.4e-11 42.7 0.0 8.5e-11 41.8 0.0 1.5 1 0 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|110668713|ref|YP_658524.1| - 1.4e-10 40.9 3.3 6.2e-10 38.9 0.7 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|110668713|ref|YP_658524.1| - 1.6e-10 41.2 0.1 1e-09 38.6 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|110668713|ref|YP_658524.1| - 3.8e-06 26.6 0.0 1.6e-05 24.6 0.0 2.1 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|110668713|ref|YP_658524.1| - 8.1e-06 25.5 0.4 0.00035 20.3 0.0 3.1 3 0 0 3 3 3 1 PAS domain HATPase_c_3 PF13589.1 gi|110668713|ref|YP_658524.1| - 3.6e-05 23.4 0.3 0.00024 20.7 0.0 2.3 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|110668713|ref|YP_658524.1| - 0.013 15.5 0.1 0.16 11.9 0.0 2.7 2 1 1 3 3 3 0 PAS fold DUF726 PF05277.7 gi|110668716|ref|YP_658527.1| - 0.57 9.0 8.0 0.7 8.7 5.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF726) Snf7 PF03357.16 gi|110668717|ref|YP_658528.1| - 0.043 13.2 1.7 2.8 7.2 0.1 2.0 1 1 1 2 2 2 0 Snf7 SecY PF00344.15 gi|110668718|ref|YP_658529.1| - 5.1e-93 311.7 21.0 6.2e-93 311.4 14.6 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|110668718|ref|YP_658529.1| - 2.3e-09 36.5 2.3 7.8e-09 34.8 1.6 2.0 1 0 0 1 1 1 1 Plug domain of Sec61p Ribosomal_L18e PF00828.14 gi|110668719|ref|YP_658530.1| - 1.7e-25 89.9 0.3 2.6e-25 89.2 0.0 1.4 1 1 1 2 2 2 1 Ribosomal protein L18e/L15 Ribosomal_L30 PF00327.15 gi|110668720|ref|YP_658531.1| - 7.5e-14 51.0 0.0 1.3e-13 50.2 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e OHCU_decarbox PF09349.5 gi|110668720|ref|YP_658531.1| - 0.12 12.6 0.1 0.18 12.1 0.0 1.3 1 0 0 1 1 1 0 OHCU decarboxylase Ribosomal_S5 PF00333.15 gi|110668721|ref|YP_658532.1| - 9.9e-27 92.4 0.2 2.3e-26 91.3 0.2 1.7 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|110668721|ref|YP_658532.1| - 1.1e-20 72.6 0.3 1.7e-20 72.0 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L18p PF00861.17 gi|110668722|ref|YP_658533.1| - 1.2e-30 106.1 0.0 1.7e-30 105.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L19e PF01280.15 gi|110668723|ref|YP_658534.1| - 1.9e-54 183.4 4.2 2.1e-54 183.3 2.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e HTH_17 PF12728.2 gi|110668723|ref|YP_658534.1| - 0.045 14.0 0.1 9.2 6.6 0.0 3.3 3 0 0 3 3 3 0 Helix-turn-helix domain Ribosomal_L32e PF01655.13 gi|110668724|ref|YP_658535.1| - 3.7e-36 123.5 0.1 1.3e-35 121.7 0.2 1.8 2 0 0 2 2 2 1 Ribosomal protein L32 HHH_5 PF14520.1 gi|110668724|ref|YP_658535.1| - 3.6e-10 39.8 3.9 1.7e-09 37.7 0.6 2.7 2 1 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|110668724|ref|YP_658535.1| - 4.8e-06 26.0 0.0 1.1e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.2 gi|110668724|ref|YP_658535.1| - 2.6e-05 24.0 0.1 5.8e-05 22.8 0.1 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.18 gi|110668724|ref|YP_658535.1| - 0.00035 20.1 0.1 0.66 9.7 0.0 3.3 3 0 0 3 3 3 2 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|110668724|ref|YP_658535.1| - 0.019 14.8 0.0 0.096 12.6 0.0 2.2 2 1 1 3 3 3 0 Pathogenicity locus Ribosomal_L6 PF00347.18 gi|110668725|ref|YP_658536.1| - 3.3e-25 88.3 0.1 3e-13 50.0 0.0 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 OspE PF02471.12 gi|110668725|ref|YP_658536.1| - 0.014 15.2 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 Borrelia outer surface protein E Ribosomal_S8 PF00410.14 gi|110668726|ref|YP_658537.1| - 3.7e-23 81.7 0.0 5.2e-23 81.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.16 gi|110668727|ref|YP_658538.1| - 1.1e-16 59.9 3.7 1.2e-16 59.7 2.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.1 gi|110668727|ref|YP_658538.1| - 0.0052 16.5 0.3 0.0066 16.1 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) Ribosomal_L37ae PF01780.14 gi|110668727|ref|YP_658538.1| - 0.016 15.0 0.7 0.02 14.7 0.5 1.2 1 0 0 1 1 1 0 Ribosomal L37ae protein family zf-P11 PF03854.9 gi|110668727|ref|YP_658538.1| - 0.019 14.4 0.6 0.026 13.9 0.4 1.2 1 0 0 1 1 1 0 P-11 zinc finger DUF2616 PF11077.3 gi|110668727|ref|YP_658538.1| - 0.068 12.6 0.4 0.066 12.7 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2616) Ribosomal_S26e PF01283.14 gi|110668727|ref|YP_658538.1| - 0.11 12.7 0.7 0.13 12.5 0.5 1.2 1 0 0 1 1 1 0 Ribosomal protein S26e FYVE PF01363.16 gi|110668727|ref|YP_658538.1| - 0.16 11.9 4.6 0.23 11.3 3.2 1.3 1 1 0 1 1 1 0 FYVE zinc finger zf-C2HC_2 PF13913.1 gi|110668727|ref|YP_658538.1| - 3 7.6 6.4 3.8 7.2 1.3 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Ribosomal_L5_C PF00673.16 gi|110668728|ref|YP_658539.1| - 8.4e-23 79.9 0.0 1.4e-22 79.2 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|110668728|ref|YP_658539.1| - 6.4e-14 51.4 0.0 1.2e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.15 gi|110668729|ref|YP_658540.1| - 1.4e-24 85.4 0.0 2.5e-24 84.7 0.0 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|110668729|ref|YP_658540.1| - 4.3e-12 45.6 0.1 8.4e-12 44.7 0.1 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|110668729|ref|YP_658540.1| - 8.3e-07 28.3 0.1 1.5e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 S4 domain KOW PF00467.24 gi|110668729|ref|YP_658540.1| - 0.05 13.3 0.1 0.15 11.8 0.0 1.9 1 0 0 1 1 1 0 KOW motif KOW PF00467.24 gi|110668730|ref|YP_658541.1| - 7.3e-05 22.3 0.7 0.00014 21.4 0.5 1.5 1 0 0 1 1 1 1 KOW motif Ribosomal_L14 PF00238.14 gi|110668731|ref|YP_658542.1| - 2.7e-37 127.2 0.1 3e-37 127.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.15 gi|110668732|ref|YP_658543.1| - 5.7e-28 96.7 0.5 6.9e-28 96.4 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 UPF0086 PF01868.11 gi|110668733|ref|YP_658544.1| - 4.2e-22 77.6 0.2 5.1e-14 51.6 0.0 3.1 2 1 0 2 2 2 2 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.18 gi|110668734|ref|YP_658545.1| - 1e-18 66.7 0.1 1.2e-18 66.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein FUSC-like PF12805.2 gi|110668734|ref|YP_658545.1| - 0.028 13.3 0.0 0.032 13.1 0.0 1.0 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS KH_2 PF07650.12 gi|110668735|ref|YP_658546.1| - 2.9e-15 55.5 0.0 6.4e-15 54.4 0.0 1.6 1 0 0 1 1 1 1 KH domain Ribosomal_S3_C PF00189.15 gi|110668735|ref|YP_658546.1| - 6.8e-15 55.0 0.3 1.1e-14 54.4 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_1 PF00013.24 gi|110668735|ref|YP_658546.1| - 0.0018 17.8 0.1 0.0018 17.8 0.1 2.3 2 0 0 2 2 2 1 KH domain NEAT PF05031.7 gi|110668735|ref|YP_658546.1| - 0.01 15.8 0.7 0.024 14.6 0.5 1.6 1 0 0 1 1 1 0 Iron Transport-associated domain KH_3 PF13014.1 gi|110668735|ref|YP_658546.1| - 0.01 15.4 0.9 0.055 13.1 0.6 2.3 1 0 0 1 1 1 0 KH domain KH_5 PF13184.1 gi|110668735|ref|YP_658546.1| - 0.022 14.5 0.0 0.091 12.5 0.0 2.0 2 0 0 2 2 2 0 NusA-like KH domain KH_4 PF13083.1 gi|110668735|ref|YP_658546.1| - 0.27 10.9 0.1 0.27 10.9 0.1 2.3 2 1 0 2 2 2 0 KH domain Ribosomal_L22 PF00237.14 gi|110668736|ref|YP_658547.1| - 6.4e-24 83.9 0.0 7.5e-24 83.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.16 gi|110668737|ref|YP_658548.1| - 1.8e-27 94.7 0.0 2.5e-27 94.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L2_C PF03947.13 gi|110668738|ref|YP_658549.1| - 2.4e-46 156.7 0.9 3.3e-46 156.3 0.6 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|110668738|ref|YP_658549.1| - 7.4e-15 54.6 0.0 2.4e-14 53.0 0.0 1.9 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|110668739|ref|YP_658550.1| - 5.2e-17 61.5 0.6 9.9e-17 60.6 0.4 1.4 1 1 0 1 1 1 1 Ribosomal protein L23 P2 PF07194.6 gi|110668739|ref|YP_658550.1| - 0.0028 17.4 2.1 0.0042 16.9 1.3 1.4 1 1 0 1 1 1 1 P2 response regulator binding domain Ribosomal_L4 PF00573.17 gi|110668740|ref|YP_658551.1| - 1.4e-44 151.8 0.3 1.6e-44 151.6 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.17 gi|110668741|ref|YP_658552.1| - 5.6e-84 281.6 0.0 8.7e-84 280.9 0.0 1.3 2 0 0 2 2 2 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.12 gi|110668742|ref|YP_658553.1| - 6.6e-46 156.9 0.0 9.7e-46 156.4 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methyltransferase eIF-1a PF01176.14 gi|110668742|ref|YP_658553.1| - 0.002 17.5 0.2 0.037 13.4 0.1 2.4 2 0 0 2 2 2 1 Translation initiation factor 1A / IF-1 DNA_ligase_ZBD PF03119.11 gi|110668743|ref|YP_658554.1| - 0.38 10.4 2.4 1.3 8.7 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DisA_N PF02457.11 gi|110668744|ref|YP_658555.1| - 1e-08 34.3 0.4 2.3e-08 33.2 0.3 1.6 1 1 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding DisA_N PF02457.11 gi|110668745|ref|YP_658556.1| - 0.00074 18.6 0.0 0.0019 17.3 0.0 1.6 1 1 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding FMN_dh PF01070.13 gi|110668746|ref|YP_658557.1| - 5.4e-127 423.5 0.0 6.3e-127 423.3 0.0 1.0 1 0 0 1 1 1 1 FMN-dependent dehydrogenase ThiG PF05690.9 gi|110668746|ref|YP_658557.1| - 3.5e-07 29.5 0.1 0.0069 15.4 0.0 2.2 1 1 1 2 2 2 2 Thiazole biosynthesis protein ThiG IMPDH PF00478.20 gi|110668746|ref|YP_658557.1| - 1.5e-05 24.1 2.5 1.5e-05 24.0 0.4 2.0 2 1 1 3 3 3 1 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.16 gi|110668746|ref|YP_658557.1| - 0.00078 18.7 0.1 0.45 9.7 0.0 3.1 2 1 2 4 4 4 2 Histidine biosynthesis protein PcrB PF01884.12 gi|110668746|ref|YP_658557.1| - 0.034 13.3 0.4 2.1 7.5 0.0 2.3 1 1 1 2 2 2 0 PcrB family Glu_synthase PF01645.12 gi|110668746|ref|YP_658557.1| - 0.082 11.8 0.6 0.14 11.0 0.4 1.4 1 1 0 1 1 1 0 Conserved region in glutamate synthase NMO PF03060.10 gi|110668746|ref|YP_658557.1| - 0.098 11.7 2.3 0.18 10.9 1.6 1.4 1 0 0 1 1 1 0 Nitronate monooxygenase PGA_cap PF09587.5 gi|110668747|ref|YP_658558.1| - 6.8e-66 222.1 0.1 9e-66 221.7 0.1 1.2 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap CarboxypepD_reg PF13620.1 gi|110668747|ref|YP_658558.1| - 1.9e-07 31.0 0.2 6.5e-07 29.3 0.1 1.9 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain AP_endonuc_2 PF01261.19 gi|110668747|ref|YP_658558.1| - 0.0014 17.9 0.2 0.025 13.8 0.1 2.2 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel UCR_Fe-S_N PF10399.4 gi|110668747|ref|YP_658558.1| - 0.022 13.8 0.2 0.022 13.8 0.1 2.0 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TMP-TENI PF02581.12 gi|110668747|ref|YP_658558.1| - 0.07 12.2 0.1 0.8 8.7 0.0 2.4 3 0 0 3 3 3 0 Thiamine monophosphate synthase/TENI eIF-5_eIF-2B PF01873.12 gi|110668748|ref|YP_658559.1| - 6.6e-27 93.6 0.0 9.1e-27 93.1 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|110668748|ref|YP_658559.1| - 2.2e-09 36.9 2.1 3.9e-09 36.1 1.4 1.4 1 0 0 1 1 1 1 TRAM domain DUF2387 PF09526.5 gi|110668748|ref|YP_658559.1| - 0.041 13.8 2.8 0.29 11.1 1.8 2.2 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) DUF35_N PF12172.3 gi|110668748|ref|YP_658559.1| - 0.065 13.1 0.3 9.5 6.2 0.0 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DNA_RNApol_7kD PF03604.8 gi|110668748|ref|YP_658559.1| - 0.085 12.3 0.5 13 5.4 0.0 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Lar_restr_allev PF14354.1 gi|110668748|ref|YP_658559.1| - 0.31 11.3 2.4 2.5 8.4 1.7 2.1 1 1 0 1 1 1 0 Restriction alleviation protein Lar DS PF01916.12 gi|110668750|ref|YP_658561.1| - 4.8e-73 245.9 0.0 1.7e-51 175.1 0.0 2.0 1 1 0 2 2 2 2 Deoxyhypusine synthase Peptidase_M22 PF00814.20 gi|110668750|ref|YP_658561.1| - 0.0085 15.6 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 Glycoprotease family Med8 PF10232.4 gi|110668750|ref|YP_658561.1| - 0.01 15.3 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 0 Mediator of RNA polymerase II transcription complex subunit 8 NIF3 PF01784.13 gi|110668751|ref|YP_658562.1| - 3.8e-48 164.1 0.0 4.5e-48 163.9 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) PhoQ_Sensor PF08918.5 gi|110668752|ref|YP_658563.1| - 0.086 12.3 1.1 11 5.4 0.0 2.7 3 0 0 3 3 3 0 PhoQ Sensor zf-C2H2 PF00096.21 gi|110668753|ref|YP_658564.1| - 0.057 13.7 3.4 0.1 13.0 2.3 1.5 1 1 0 1 1 1 0 Zinc finger, C2H2 type zf-H2C2_2 PF13465.1 gi|110668753|ref|YP_658564.1| - 0.11 12.7 0.1 0.11 12.7 0.1 1.6 2 0 0 2 2 2 0 Zinc-finger double domain zf-C2H2_4 PF13894.1 gi|110668753|ref|YP_658564.1| - 0.82 10.1 3.2 1.3 9.5 2.2 1.4 1 0 0 1 1 1 0 C2H2-type zinc finger Iron_transport PF10634.4 gi|110668754|ref|YP_658565.1| - 1.4e-06 28.2 0.1 0.0016 18.3 0.0 2.5 2 2 0 2 2 2 2 Fe2+ transport protein CoA_binding PF02629.14 gi|110668755|ref|YP_658566.1| - 6.8e-24 84.2 2.1 1.4e-23 83.2 0.5 2.2 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|110668755|ref|YP_658566.1| - 2.1e-13 50.1 0.9 4.2e-13 49.1 0.6 1.5 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|110668755|ref|YP_658566.1| - 4.6e-08 32.7 0.0 7.4e-08 32.0 0.0 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|110668755|ref|YP_658566.1| - 5.9e-07 29.6 0.0 3.6e-05 23.8 0.0 2.2 2 0 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|110668755|ref|YP_658566.1| - 0.09 13.3 0.1 0.28 11.6 0.0 1.9 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold ATP-grasp_2 PF08442.5 gi|110668756|ref|YP_658567.1| - 1.3e-63 214.0 0.2 2e-63 213.4 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|110668756|ref|YP_658567.1| - 3.7e-19 68.8 1.5 4.2e-19 68.6 0.4 1.6 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|110668756|ref|YP_658567.1| - 6.9e-13 48.4 1.6 1.6e-12 47.3 1.1 1.5 1 0 0 1 1 1 1 CoA-ligase CPSase_L_D2 PF02786.12 gi|110668756|ref|YP_658567.1| - 2.1e-10 40.2 1.6 3.2e-09 36.3 0.2 2.2 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.1 gi|110668756|ref|YP_658567.1| - 1.8e-08 34.3 0.8 8.7e-08 32.1 0.0 2.3 3 0 0 3 3 3 1 ATP-grasp domain GARS_A PF01071.14 gi|110668756|ref|YP_658567.1| - 8.3e-07 28.7 2.3 1.1e-06 28.3 0.1 2.0 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.17 gi|110668756|ref|YP_658567.1| - 1.4e-06 27.8 0.0 2.6e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Ribonuc_red_lgC PF02867.10 gi|110668757|ref|YP_658568.1| - 1.5e-134 449.5 0.3 1.7e-102 343.7 0.0 3.2 3 0 0 3 3 3 3 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|110668757|ref|YP_658568.1| - 5.6e-27 93.3 0.0 2.9e-26 91.0 0.0 2.3 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain TSCPD PF12637.2 gi|110668757|ref|YP_658568.1| - 2.3e-26 91.5 0.0 7.4e-26 89.9 0.0 2.0 1 0 0 1 1 1 1 TSCPD domain Intein_splicing PF14890.1 gi|110668757|ref|YP_658568.1| - 2.7e-22 79.1 0.0 4e-16 58.8 0.0 2.4 2 0 0 2 2 2 2 Intein splicing domain LAGLIDADG_3 PF14528.1 gi|110668757|ref|YP_658568.1| - 1e-08 35.3 0.0 0.0045 17.2 0.0 4.6 5 0 0 5 5 5 2 LAGLIDADG-like domain PT-HINT PF07591.6 gi|110668757|ref|YP_658568.1| - 3.6e-06 26.9 0.1 0.29 11.0 0.0 3.5 3 0 0 3 3 3 2 Pretoxin HINT domain Hint PF01079.15 gi|110668757|ref|YP_658568.1| - 9.6e-06 24.9 0.1 0.00018 20.7 0.1 2.5 2 0 0 2 2 2 1 Hint module LAGLIDADG_WhiA PF14527.1 gi|110668757|ref|YP_658568.1| - 0.017 14.9 0.1 4.1 7.3 0.0 3.5 3 0 0 3 3 3 0 WhiA LAGLIDADG-like domain SQS_PSY PF00494.14 gi|110668758|ref|YP_658569.1| - 4.9e-64 216.2 8.6 6.5e-64 215.7 6.0 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase DUF422 PF04240.7 gi|110668759|ref|YP_658570.1| - 1.4e-78 263.1 14.9 1.7e-78 262.8 10.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF422) DUF2512 PF10710.4 gi|110668759|ref|YP_658570.1| - 1.9 7.9 8.6 0.094 12.1 0.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2512) UbiA PF01040.13 gi|110668760|ref|YP_658571.1| - 1.5e-24 86.5 23.3 2.1e-24 86.1 16.2 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Amino_oxidase PF01593.19 gi|110668761|ref|YP_658572.1| - 1.2e-21 77.3 0.1 3.3e-21 75.8 0.1 1.7 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|110668761|ref|YP_658572.1| - 1.4e-17 63.4 0.0 3.7e-17 62.0 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|110668761|ref|YP_658572.1| - 7.9e-14 51.3 3.4 1.5e-08 33.9 0.6 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|110668761|ref|YP_658572.1| - 6.9e-10 39.1 0.9 1.2e-06 28.8 0.2 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|110668761|ref|YP_658572.1| - 8.8e-07 27.7 0.0 0.00042 18.9 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|110668761|ref|YP_658572.1| - 2.5e-06 26.6 2.1 3.3e-06 26.2 0.4 1.8 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|110668761|ref|YP_658572.1| - 3.3e-06 27.2 0.0 0.0018 18.3 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|110668761|ref|YP_658572.1| - 7e-06 26.0 0.0 5.7e-05 23.0 0.1 2.2 2 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|110668761|ref|YP_658572.1| - 8.4e-05 21.7 0.6 0.00013 21.1 0.4 1.3 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|110668761|ref|YP_658572.1| - 0.00012 21.2 0.4 0.00023 20.3 0.3 1.4 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|110668761|ref|YP_658572.1| - 0.0003 19.9 0.0 0.00042 19.5 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|110668761|ref|YP_658572.1| - 0.0032 17.6 0.0 0.0055 16.9 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Strep_67kDa_ant PF06100.6 gi|110668761|ref|YP_658572.1| - 0.0053 15.1 0.0 0.0077 14.6 0.0 1.2 1 0 0 1 1 1 1 Streptococcal 67 kDa myosin-cross-reactive antigen like family GDI PF00996.13 gi|110668761|ref|YP_658572.1| - 0.0058 15.0 0.2 2.2 6.5 0.0 2.2 2 0 0 2 2 2 2 GDP dissociation inhibitor GIDA PF01134.17 gi|110668761|ref|YP_658572.1| - 0.025 13.4 0.3 0.039 12.7 0.2 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A AlaDh_PNT_C PF01262.16 gi|110668761|ref|YP_658572.1| - 0.049 13.2 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|110668761|ref|YP_658572.1| - 0.063 12.6 0.3 0.11 11.8 0.2 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.9 gi|110668761|ref|YP_658572.1| - 0.13 10.8 0.2 0.22 10.1 0.2 1.3 1 0 0 1 1 1 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|110668761|ref|YP_658572.1| - 0.19 11.5 0.8 1.4 8.6 0.1 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding Usp PF00582.21 gi|110668762|ref|YP_658573.1| - 7.9e-13 48.8 0.6 9.4e-13 48.5 0.4 1.1 1 0 0 1 1 1 1 Universal stress protein family NYN PF01936.13 gi|110668763|ref|YP_658574.1| - 2e-20 73.5 0.1 3.3e-20 72.8 0.1 1.3 1 0 0 1 1 1 1 NYN domain TatD_DNase PF01026.16 gi|110668764|ref|YP_658575.1| - 5.2e-23 81.5 0.0 1.2e-21 77.1 0.0 2.0 1 1 0 1 1 1 1 TatD related DNase DUF2150 PF09920.4 gi|110668765|ref|YP_658576.1| - 1.8e-72 242.9 7.9 2e-72 242.7 5.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) HrpJ PF07201.6 gi|110668765|ref|YP_658576.1| - 0.024 14.6 1.1 0.23 11.4 0.6 2.0 2 0 0 2 2 2 0 HrpJ-like domain HMG_CoA_synt_N PF01154.12 gi|110668766|ref|YP_658577.1| - 5e-25 88.0 0.0 8.1e-25 87.3 0.0 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.5 gi|110668766|ref|YP_658577.1| - 1.1e-19 71.0 0.0 2.3e-19 69.9 0.0 1.5 2 0 0 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HTH_31 PF13560.1 gi|110668767|ref|YP_658578.1| - 4.4e-09 36.4 0.0 1.6e-08 34.6 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|110668767|ref|YP_658578.1| - 3.5e-08 33.3 0.0 8.4e-08 32.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|110668767|ref|YP_658578.1| - 5.9e-08 32.4 0.0 1.6e-07 31.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_11 PF08279.7 gi|110668767|ref|YP_658578.1| - 0.032 13.8 0.1 0.34 10.6 0.0 2.5 3 0 0 3 3 3 0 HTH domain DUF457 PF04307.9 gi|110668768|ref|YP_658579.1| - 6.8e-10 38.5 1.6 7.5e-10 38.3 1.1 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Acetyltransf_1 PF00583.19 gi|110668769|ref|YP_658580.1| - 2.4e-13 49.9 0.0 4.4e-13 49.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|110668769|ref|YP_658580.1| - 9.2e-09 35.4 0.0 2.1e-08 34.2 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|110668769|ref|YP_658580.1| - 8.5e-08 32.2 0.0 1.4e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|110668769|ref|YP_658580.1| - 6.4e-06 26.2 0.0 9.8e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|110668769|ref|YP_658580.1| - 4.3e-05 23.3 0.0 0.00012 21.8 0.0 1.7 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|110668769|ref|YP_658580.1| - 6.5e-05 23.1 0.0 7.3e-05 22.9 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|110668769|ref|YP_658580.1| - 0.0049 16.7 0.0 0.0093 15.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|110668769|ref|YP_658580.1| - 0.02 14.8 0.0 0.053 13.4 0.0 1.5 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|110668769|ref|YP_658580.1| - 0.028 14.1 0.0 0.05 13.3 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein TauE PF01925.14 gi|110668770|ref|YP_658581.1| - 0.058 12.8 23.0 0.081 12.3 15.9 1.1 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE RseC_MucC PF04246.7 gi|110668770|ref|YP_658581.1| - 5.3 6.6 11.9 0.31 10.5 1.7 2.5 2 1 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC tRNA_SAD PF07973.9 gi|110668771|ref|YP_658582.1| - 1.4e-11 44.0 0.0 2.5e-11 43.2 0.0 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|110668771|ref|YP_658582.1| - 1.9e-10 39.6 0.1 2.9e-10 39.0 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.14 gi|110668771|ref|YP_658582.1| - 0.013 15.2 2.6 0.027 14.1 1.0 2.1 2 0 0 2 2 2 0 DHHA1 domain HTH_31 PF13560.1 gi|110668772|ref|YP_658583.1| - 0.0099 16.0 2.5 0.035 14.3 0.1 2.6 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|110668772|ref|YP_658583.1| - 0.014 14.9 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PhnA_Zn_Ribbon PF08274.7 gi|110668772|ref|YP_658583.1| - 0.015 15.0 1.4 0.034 13.9 1.0 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon MRI PF15325.1 gi|110668772|ref|YP_658583.1| - 0.044 14.7 0.9 0.065 14.2 0.6 1.3 1 0 0 1 1 1 0 Modulator of retrovirus infection FLO_LFY PF01698.11 gi|110668772|ref|YP_658583.1| - 0.073 11.9 0.1 0.082 11.7 0.1 1.1 1 0 0 1 1 1 0 Floricaula / Leafy protein Helicase_C_4 PF13871.1 gi|110668773|ref|YP_658584.1| - 0.01 15.2 0.1 0.014 14.8 0.1 1.2 1 0 0 1 1 1 0 Helicase_C-like DUF883 PF05957.8 gi|110668773|ref|YP_658584.1| - 0.15 12.4 0.4 0.15 12.4 0.3 1.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF420 PF04238.7 gi|110668774|ref|YP_658585.1| - 2.2e-37 127.9 14.3 2.2e-37 127.9 9.9 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.4 gi|110668774|ref|YP_658585.1| - 0.011 15.8 17.6 0.04 14.0 7.7 3.1 1 1 3 4 4 4 0 Predicted membrane protein (DUF2306) DUF1240 PF06836.7 gi|110668774|ref|YP_658585.1| - 0.016 15.3 3.8 0.016 15.3 2.6 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF1240) RrnaAD PF00398.15 gi|110668775|ref|YP_658586.1| - 9.6e-50 169.0 0.0 1.1e-49 168.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|110668775|ref|YP_658586.1| - 5.8e-09 36.0 0.1 1.4e-08 34.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|110668775|ref|YP_658586.1| - 0.0005 20.6 0.0 0.001 19.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|110668775|ref|YP_658586.1| - 0.015 14.7 0.0 0.055 12.8 0.0 1.8 2 0 0 2 2 2 0 Nodulation protein S (NodS) MTS PF05175.9 gi|110668775|ref|YP_658586.1| - 0.023 14.0 0.0 0.047 13.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|110668775|ref|YP_658586.1| - 0.041 14.3 0.2 0.15 12.5 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|110668775|ref|YP_658586.1| - 0.17 11.4 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_26 PF13659.1 gi|110668776|ref|YP_658587.1| - 1.5e-16 60.4 0.1 2.2e-16 59.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|110668776|ref|YP_658587.1| - 9.1e-13 47.9 0.0 1.2e-12 47.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|110668776|ref|YP_658587.1| - 3.6e-06 27.5 0.0 5.8e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|110668776|ref|YP_658587.1| - 5.4e-05 23.6 0.0 0.00054 20.3 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|110668776|ref|YP_658587.1| - 0.0001 22.7 0.0 0.00095 19.5 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|110668776|ref|YP_658587.1| - 0.00055 19.5 0.0 0.00073 19.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|110668776|ref|YP_658587.1| - 0.001 18.7 0.0 0.0013 18.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|110668776|ref|YP_658587.1| - 0.0012 18.5 0.0 0.0055 16.4 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|110668776|ref|YP_658587.1| - 0.0048 17.2 0.0 0.0068 16.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|110668776|ref|YP_658587.1| - 0.013 14.6 0.4 0.025 13.7 0.1 1.5 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) DUF938 PF06080.7 gi|110668776|ref|YP_658587.1| - 0.013 15.0 0.1 0.02 14.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_3 PF01596.12 gi|110668776|ref|YP_658587.1| - 0.023 13.7 0.0 0.057 12.4 0.0 1.6 2 0 0 2 2 2 0 O-methyltransferase UPF0146 PF03686.8 gi|110668776|ref|YP_658587.1| - 0.061 13.1 0.0 0.095 12.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) Ubie_methyltran PF01209.13 gi|110668776|ref|YP_658587.1| - 0.17 11.0 0.0 0.3 10.1 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Meth_synt_1 PF08267.7 gi|110668777|ref|YP_658588.1| - 1.5e-21 76.9 0.0 5.5e-20 71.8 0.0 2.0 1 1 1 2 2 2 2 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.13 gi|110668777|ref|YP_658588.1| - 2.2e-05 23.6 0.0 6.5e-05 22.0 0.0 1.7 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain PIG-L PF02585.12 gi|110668777|ref|YP_658588.1| - 0.047 14.2 0.0 0.084 13.3 0.0 1.4 1 0 0 1 1 1 0 GlcNAc-PI de-N-acetylase Meth_synt_2 PF01717.13 gi|110668778|ref|YP_658589.1| - 8e-77 258.3 0.0 9.7e-77 258.0 0.0 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|110668778|ref|YP_658589.1| - 2.8e-20 72.8 0.0 5.6e-20 71.8 0.0 1.5 1 1 1 2 2 2 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|110668778|ref|YP_658589.1| - 9.8e-05 21.4 0.0 0.00014 20.9 0.0 1.2 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) NDK PF00334.14 gi|110668779|ref|YP_658590.1| - 4.2e-54 182.0 0.0 4.7e-54 181.8 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.15 gi|110668780|ref|YP_658591.1| - 6e-23 80.4 0.0 6.5e-23 80.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e Ribosomal_S28e PF01200.13 gi|110668781|ref|YP_658592.1| - 7.8e-28 96.0 0.9 8.1e-28 95.9 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.21 gi|110668782|ref|YP_658593.1| - 9.2e-24 82.7 0.0 1.1e-23 82.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|110668782|ref|YP_658593.1| - 0.0001 22.0 0.0 0.00014 21.5 0.0 1.2 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.10 gi|110668782|ref|YP_658593.1| - 0.0017 18.5 0.1 0.0035 17.5 0.1 1.5 1 1 0 1 1 1 1 eRF1 domain 3 DUF1269 PF06897.7 gi|110668782|ref|YP_658593.1| - 0.24 11.4 2.7 1.9 8.5 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1269) DUF456 PF04306.8 gi|110668783|ref|YP_658594.1| - 1e-24 87.1 26.6 1e-24 87.1 18.4 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF456) PsbM PF05151.7 gi|110668783|ref|YP_658594.1| - 0.14 11.7 9.6 1.7 8.3 0.5 3.2 3 0 0 3 3 3 0 Photosystem II reaction centre M protein (PsbM) Cyclase PF04199.8 gi|110668784|ref|YP_658595.1| - 1.7e-22 79.8 1.0 2.3e-22 79.4 0.7 1.2 1 0 0 1 1 1 1 Putative cyclase tRNA-synt_1c PF00749.16 gi|110668785|ref|YP_658596.1| - 4.4e-56 189.8 0.0 5.6e-56 189.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|110668785|ref|YP_658596.1| - 5.3e-20 71.7 0.0 1.1e-19 70.7 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain polyprenyl_synt PF00348.12 gi|110668786|ref|YP_658597.1| - 2.2e-58 197.1 1.6 3e-58 196.7 1.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase NTPase_1 PF03266.10 gi|110668786|ref|YP_658597.1| - 0.11 12.1 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 NTPase Lactamase_B PF00753.22 gi|110668787|ref|YP_658598.1| - 4.9e-11 42.6 5.5 2.3e-10 40.4 3.8 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|110668787|ref|YP_658598.1| - 3.1e-06 26.8 2.1 5.9e-06 25.9 0.3 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|110668787|ref|YP_658598.1| - 0.0014 18.3 3.3 0.0016 18.1 0.4 2.4 3 0 0 3 3 3 1 RNA-metabolising metallo-beta-lactamase PDEase_II PF02112.10 gi|110668787|ref|YP_658598.1| - 0.087 11.7 0.1 0.14 11.0 0.1 1.2 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II LSM PF01423.17 gi|110668788|ref|YP_658599.1| - 4e-14 51.9 0.0 5.4e-14 51.4 0.0 1.2 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|110668788|ref|YP_658599.1| - 1.3e-05 25.0 0.1 1.7e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain DUF4440 PF14534.1 gi|110668788|ref|YP_658599.1| - 0.0086 16.2 0.0 0.0097 16.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) Ribosomal_L37e PF01907.14 gi|110668789|ref|YP_658600.1| - 7.8e-25 86.4 12.7 8.4e-25 86.3 8.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|110668789|ref|YP_658600.1| - 0.00051 19.7 2.6 0.00059 19.5 1.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|110668789|ref|YP_658600.1| - 0.029 13.5 4.8 0.13 11.5 3.3 1.9 1 1 2 3 3 3 0 zinc-ribbon domain Ribosomal_L32p PF01783.18 gi|110668789|ref|YP_658600.1| - 0.04 14.1 3.2 0.055 13.6 2.2 1.3 1 0 0 1 1 1 0 Ribosomal L32p protein family DUF2616 PF11077.3 gi|110668789|ref|YP_658600.1| - 0.043 13.3 0.2 0.045 13.2 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2616) HypA PF01155.14 gi|110668789|ref|YP_658600.1| - 0.057 13.0 2.0 0.065 12.9 1.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family FYVE_2 PF02318.11 gi|110668789|ref|YP_658600.1| - 0.081 12.8 2.6 0.088 12.7 1.8 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger zinc_ribbon_6 PF14599.1 gi|110668789|ref|YP_658600.1| - 0.13 12.1 1.8 0.16 11.7 1.2 1.2 1 0 0 1 1 1 0 Zinc-ribbon Zn_Tnp_IS91 PF14319.1 gi|110668789|ref|YP_658600.1| - 0.17 11.3 3.0 0.19 11.2 2.1 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain Baculo_ME53 PF06061.6 gi|110668789|ref|YP_658600.1| - 0.19 10.6 3.2 0.21 10.5 2.2 1.0 1 0 0 1 1 1 0 Baculoviridae ME53 zf-piccolo PF05715.8 gi|110668789|ref|YP_658600.1| - 0.43 10.6 5.1 5.5 7.0 3.5 2.0 1 1 0 1 1 1 0 Piccolo Zn-finger zinc_ribbon_2 PF13240.1 gi|110668789|ref|YP_658600.1| - 0.66 9.5 6.1 3.5 7.2 4.3 1.9 1 1 1 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|110668789|ref|YP_658600.1| - 1 9.0 8.0 0.82 9.3 5.0 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2H2_3 PF13878.1 gi|110668789|ref|YP_658600.1| - 1.2 8.7 8.7 5 6.7 0.9 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO RNA_POL_M_15KD PF02150.11 gi|110668789|ref|YP_658600.1| - 1.2 8.8 5.7 3.8 7.2 0.3 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit GATase_7 PF13537.1 gi|110668790|ref|YP_658601.1| - 5.2e-23 81.1 0.0 1.1e-22 80.0 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|110668790|ref|YP_658601.1| - 8.3e-23 80.8 0.2 2.1e-22 79.5 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|110668790|ref|YP_658601.1| - 1.7e-20 73.0 0.0 3.6e-15 55.5 0.0 3.2 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|110668790|ref|YP_658601.1| - 4.4e-12 45.8 0.1 1.4e-11 44.2 0.1 1.8 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|110668790|ref|YP_658601.1| - 0.0049 15.6 0.0 0.0081 14.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DUF655 PF04919.7 gi|110668791|ref|YP_658602.1| - 7.1e-62 208.3 0.1 8.6e-62 208.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.2 gi|110668791|ref|YP_658602.1| - 1.5e-05 24.8 0.0 3.1e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|110668791|ref|YP_658602.1| - 0.0067 16.4 0.0 0.02 14.9 0.0 1.8 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|110668791|ref|YP_658602.1| - 0.057 13.5 0.0 0.15 12.2 0.0 1.7 1 1 0 1 1 1 0 Helix-hairpin-helix domain RNA_pol_Rpb4 PF03874.11 gi|110668792|ref|YP_658603.1| - 7.3e-15 55.0 0.6 8.3e-15 54.8 0.4 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb4 VIT1 PF01988.14 gi|110668792|ref|YP_658603.1| - 0.19 11.2 0.2 0.21 11.0 0.1 1.2 1 0 0 1 1 1 0 VIT family Ribosomal_L21e PF01157.13 gi|110668793|ref|YP_658604.1| - 6e-31 106.1 0.1 6.6e-31 106.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e YiaAB PF05360.9 gi|110668794|ref|YP_658605.1| - 1.3 8.6 7.2 1.8 8.1 5.0 1.2 1 0 0 1 1 1 0 yiaA/B two helix domain EF1_GNE PF00736.14 gi|110668795|ref|YP_658606.1| - 1.4e-21 75.9 0.1 1.5e-21 75.8 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF3073 PF11273.3 gi|110668795|ref|YP_658606.1| - 0.061 13.8 0.0 0.079 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3073) DUF1610 PF07754.6 gi|110668796|ref|YP_658607.1| - 2e-08 34.1 18.5 7.6e-05 22.7 3.7 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) DZR PF12773.2 gi|110668796|ref|YP_658607.1| - 0.025 14.3 14.7 7.7 6.4 10.2 2.3 1 1 0 1 1 1 0 Double zinc ribbon zf-UBP PF02148.14 gi|110668796|ref|YP_658607.1| - 0.09 12.8 1.3 0.09 12.8 0.9 2.4 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein OrfB_Zn_ribbon PF07282.6 gi|110668796|ref|YP_658607.1| - 0.092 12.4 12.5 0.31 10.7 1.8 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-Mss51 PF13824.1 gi|110668796|ref|YP_658607.1| - 0.14 12.0 15.6 1.9 8.3 3.0 3.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2039 PF10217.4 gi|110668796|ref|YP_658607.1| - 0.22 11.5 8.0 0.35 10.9 5.5 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) NMDAR2_C PF10565.4 gi|110668796|ref|YP_658607.1| - 0.37 9.4 9.0 0.4 9.3 6.2 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus DUF2387 PF09526.5 gi|110668796|ref|YP_658607.1| - 0.69 9.8 0.2 0.69 9.8 0.1 2.4 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) PolC_DP2 PF03833.8 gi|110668796|ref|YP_658607.1| - 0.87 7.1 7.8 0.89 7.1 5.4 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 C1_3 PF07649.7 gi|110668796|ref|YP_658607.1| - 0.94 9.5 14.2 0.24 11.4 1.9 2.4 2 1 0 2 2 2 0 C1-like domain zf-tcix PF14952.1 gi|110668796|ref|YP_658607.1| - 0.96 8.8 0.0 0.96 8.8 0.0 3.7 2 1 1 3 3 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-RING_5 PF14634.1 gi|110668796|ref|YP_658607.1| - 1.3 8.8 12.9 3.6 7.3 1.4 2.3 1 1 1 2 2 2 0 zinc-RING finger domain zinc_ribbon_2 PF13240.1 gi|110668796|ref|YP_658607.1| - 1.4 8.5 17.9 13 5.4 0.3 3.9 3 1 1 4 4 4 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|110668796|ref|YP_658607.1| - 1.4 8.7 20.3 1.2 9.0 9.4 2.9 1 1 0 2 2 2 0 Transposase zinc-ribbon domain FYVE_2 PF02318.11 gi|110668796|ref|YP_658607.1| - 3 7.7 9.2 3.3 7.6 6.4 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger C1_1 PF00130.17 gi|110668796|ref|YP_658607.1| - 3 7.6 12.1 1.8 8.3 1.3 2.2 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-H2C2_2 PF13465.1 gi|110668796|ref|YP_658607.1| - 3.2 8.2 14.1 12 6.4 2.7 3.8 3 1 1 4 4 4 0 Zinc-finger double domain DNA_RNApol_7kD PF03604.8 gi|110668796|ref|YP_658607.1| - 3.5 7.1 17.6 7.8 6.0 3.9 3.5 2 2 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS91 PF14319.1 gi|110668796|ref|YP_658607.1| - 3.5 7.1 11.9 4.7 6.7 8.2 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain IBR PF01485.16 gi|110668796|ref|YP_658607.1| - 5.9 6.8 14.3 1e+02 2.8 10.5 2.1 1 1 1 2 2 2 0 IBR domain RNHCP PF12647.2 gi|110668796|ref|YP_658607.1| - 9 6.2 12.7 7.5 6.4 1.4 2.2 1 1 1 2 2 2 0 RNHCP domain TctA PF01970.11 gi|110668797|ref|YP_658608.1| - 1.8e-60 204.5 43.3 2.8e-60 203.9 30.0 1.3 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Ribosomal_60s PF00428.14 gi|110668798|ref|YP_658609.1| - 2.8e-11 43.6 34.3 1.2e-10 41.5 23.8 1.8 1 1 0 1 1 1 1 60s Acidic ribosomal protein TFIID_30kDa PF03540.8 gi|110668798|ref|YP_658609.1| - 0.085 12.7 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Transcription initiation factor TFIID 23-30kDa subunit RRN3 PF05327.6 gi|110668798|ref|YP_658609.1| - 0.18 9.8 4.8 0.24 9.4 3.3 1.2 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 Penicil_amidase PF01804.13 gi|110668798|ref|YP_658609.1| - 0.42 9.6 2.6 0.45 9.4 1.8 1.0 1 0 0 1 1 1 0 Penicillin amidase NOA36 PF06524.7 gi|110668798|ref|YP_658609.1| - 0.45 9.7 6.9 0.49 9.5 4.8 1.1 1 0 0 1 1 1 0 NOA36 protein DUF1510 PF07423.6 gi|110668798|ref|YP_658609.1| - 0.66 9.3 5.5 0.67 9.2 3.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) RR_TM4-6 PF06459.7 gi|110668798|ref|YP_658609.1| - 1.1 9.0 6.5 1.3 8.8 4.5 1.0 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 BSP_II PF05432.6 gi|110668798|ref|YP_658609.1| - 1.2 8.3 14.7 1.4 8.1 10.2 1.2 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) Cwf_Cwc_15 PF04889.7 gi|110668798|ref|YP_658609.1| - 1.7 8.2 8.8 1.9 8.1 6.1 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein CDC45 PF02724.9 gi|110668798|ref|YP_658609.1| - 2.7 5.8 6.4 2.9 5.8 4.4 1.1 1 0 0 1 1 1 0 CDC45-like protein RNA_pol_3_Rpc31 PF11705.3 gi|110668798|ref|YP_658609.1| - 3.3 7.5 12.1 3.4 7.5 8.4 1.2 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 Daxx PF03344.10 gi|110668798|ref|YP_658609.1| - 3.6 5.9 12.7 4.1 5.7 8.8 1.1 1 0 0 1 1 1 0 Daxx Family CENP-T PF15511.1 gi|110668798|ref|YP_658609.1| - 3.9 6.6 11.1 4.5 6.4 7.7 1.0 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T Myc_N PF01056.13 gi|110668798|ref|YP_658609.1| - 4.9 6.2 8.6 5.1 6.1 5.9 1.2 1 0 0 1 1 1 0 Myc amino-terminal region Sigma70_ner PF04546.8 gi|110668798|ref|YP_658609.1| - 5.6 6.5 15.6 7.7 6.0 10.8 1.2 1 0 0 1 1 1 0 Sigma-70, non-essential region Exonuc_VIII PF06630.6 gi|110668798|ref|YP_658609.1| - 6.7 5.9 9.2 3.8 6.8 5.0 1.5 1 1 1 2 2 2 0 Enterobacterial exodeoxyribonuclease VIII VID27 PF08553.5 gi|110668798|ref|YP_658609.1| - 6.8 4.7 6.6 7.1 4.7 4.6 1.1 1 0 0 1 1 1 0 VID27 cytoplasmic protein DUF2457 PF10446.4 gi|110668798|ref|YP_658609.1| - 9 4.8 16.3 11 4.6 11.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) Ribosomal_L10 PF00466.15 gi|110668799|ref|YP_658610.1| - 8.3e-21 73.7 0.0 1.3e-20 73.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L10 CobT PF06213.7 gi|110668799|ref|YP_658610.1| - 0.33 10.0 14.0 0.56 9.2 9.7 1.3 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT Ribosomal_L1 PF00687.16 gi|110668800|ref|YP_658611.1| - 8.8e-44 149.4 0.0 1e-43 149.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family UvrB PF12344.3 gi|110668800|ref|YP_658611.1| - 0.059 12.9 0.3 0.13 11.8 0.2 1.5 1 0 0 1 1 1 0 Ultra-violet resistance protein B RPAP3_C PF13877.1 gi|110668801|ref|YP_658612.1| - 0.036 14.0 0.0 0.044 13.7 0.0 1.1 1 0 0 1 1 1 0 Potential Monad-binding region of RPAP3 BPL_LplA_LipB PF03099.14 gi|110668802|ref|YP_658613.1| - 3e-22 78.9 0.0 4.9e-22 78.2 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.7 gi|110668802|ref|YP_658613.1| - 1.3e-13 50.3 0.0 2.9e-13 49.2 0.0 1.6 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.12 gi|110668802|ref|YP_658613.1| - 4.7e-12 45.4 0.0 8.2e-12 44.6 0.0 1.4 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_24 PF13412.1 gi|110668802|ref|YP_658613.1| - 8.5e-05 21.8 0.0 0.00021 20.5 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|110668802|ref|YP_658613.1| - 0.00043 20.0 0.1 0.0012 18.5 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|110668802|ref|YP_658613.1| - 0.0079 15.8 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_36 PF13730.1 gi|110668802|ref|YP_658613.1| - 0.11 12.6 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain CPSase_L_D2 PF02786.12 gi|110668803|ref|YP_658614.1| - 3.9e-74 248.4 0.1 6.6e-74 247.7 0.1 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|110668803|ref|YP_658614.1| - 2.7e-41 140.1 1.8 7.5e-41 138.6 0.2 2.5 3 0 0 3 3 3 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|110668803|ref|YP_658614.1| - 4.7e-36 123.0 0.0 1.2e-35 121.7 0.0 1.7 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.17 gi|110668803|ref|YP_658614.1| - 1.6e-17 62.8 4.6 2.2e-17 62.4 1.8 2.3 2 0 0 2 2 2 1 Biotin-requiring enzyme ATP-grasp_4 PF13535.1 gi|110668803|ref|YP_658614.1| - 2.5e-17 63.2 0.2 6.2e-17 61.9 0.1 1.6 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|110668803|ref|YP_658614.1| - 3.1e-13 49.1 0.0 1.3e-12 47.0 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|110668803|ref|YP_658614.1| - 7.4e-09 35.2 0.0 1.5e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|110668803|ref|YP_658614.1| - 3.2e-08 33.1 0.3 1.1e-07 31.3 0.1 1.9 3 0 0 3 3 3 1 ATP-grasp domain Biotin_lipoyl_2 PF13533.1 gi|110668803|ref|YP_658614.1| - 3.6e-06 26.5 3.1 0.072 12.7 0.0 3.6 3 1 1 4 4 4 2 Biotin-lipoyl like RimK PF08443.6 gi|110668803|ref|YP_658614.1| - 0.00023 20.7 0.0 0.0035 16.8 0.0 2.2 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|110668803|ref|YP_658614.1| - 0.0013 18.6 0.0 0.003 17.4 0.0 1.7 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|110668803|ref|YP_658614.1| - 0.011 14.9 0.0 0.022 13.9 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain Peptidase_M23 PF01551.17 gi|110668803|ref|YP_658614.1| - 0.016 15.2 0.1 1.9 8.5 0.0 2.8 2 0 0 2 2 2 0 Peptidase family M23 GARS_A PF01071.14 gi|110668803|ref|YP_658614.1| - 0.02 14.4 0.0 0.041 13.4 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GCV_H PF01597.14 gi|110668803|ref|YP_658614.1| - 0.097 12.3 0.3 0.24 11.1 0.2 1.6 1 0 0 1 1 1 0 Glycine cleavage H-protein Semialdhyde_dh PF01118.19 gi|110668804|ref|YP_658615.1| - 2e-31 108.7 0.0 4.9e-31 107.5 0.0 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|110668804|ref|YP_658615.1| - 7.2e-30 104.1 0.0 1e-29 103.7 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|110668804|ref|YP_658615.1| - 3e-05 23.9 0.0 8.8e-05 22.4 0.0 1.9 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.11 gi|110668804|ref|YP_658615.1| - 0.0003 21.3 0.0 0.00066 20.2 0.0 1.6 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase GFO_IDH_MocA PF01408.17 gi|110668804|ref|YP_658615.1| - 0.004 17.6 0.0 0.0078 16.7 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_10 PF13460.1 gi|110668804|ref|YP_658615.1| - 0.09 12.7 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 NADH(P)-binding 2-Hacid_dh_C PF02826.14 gi|110668805|ref|YP_658616.1| - 9e-50 168.2 0.0 1.4e-49 167.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|110668805|ref|YP_658616.1| - 2e-07 30.5 0.0 2.5e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.12 gi|110668805|ref|YP_658616.1| - 0.013 15.9 0.0 0.028 14.8 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DAO PF01266.19 gi|110668806|ref|YP_658617.1| - 3.8e-10 39.2 8.1 5e-05 22.3 0.5 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|110668806|ref|YP_658617.1| - 8.8e-05 21.1 0.5 0.00062 18.3 0.4 2.2 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|110668806|ref|YP_658617.1| - 0.00012 22.0 1.2 0.00049 20.0 0.5 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|110668806|ref|YP_658617.1| - 0.00025 20.2 9.6 0.0013 17.9 6.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|110668806|ref|YP_658617.1| - 0.0017 17.5 3.4 0.0099 14.9 2.3 2.0 1 1 0 1 1 1 1 FAD binding domain GIDA PF01134.17 gi|110668806|ref|YP_658617.1| - 0.0044 15.9 2.9 0.0076 15.1 1.1 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|110668806|ref|YP_658617.1| - 0.008 15.0 5.2 0.008 15.0 3.6 1.8 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|110668806|ref|YP_658617.1| - 0.0093 15.0 0.3 0.031 13.3 0.1 1.8 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.1 gi|110668806|ref|YP_658617.1| - 0.018 15.0 0.4 0.018 15.0 0.3 2.5 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|110668806|ref|YP_658617.1| - 0.063 13.0 6.1 0.31 10.7 0.2 2.8 2 1 0 2 2 2 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|110668806|ref|YP_658617.1| - 0.064 12.1 4.2 1.3 7.8 0.8 2.4 2 1 0 2 2 2 0 Lycopene cyclase protein Pyr_redox PF00070.22 gi|110668806|ref|YP_658617.1| - 0.14 12.5 1.5 8.3 6.9 0.8 2.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|110668806|ref|YP_658617.1| - 0.18 10.3 6.2 0.32 9.5 0.1 2.4 2 1 0 2 2 2 0 Tryptophan halogenase TSC22 PF01166.13 gi|110668807|ref|YP_658618.1| - 0.008 16.1 0.6 0.013 15.4 0.4 1.3 1 0 0 1 1 1 1 TSC-22/dip/bun family bZIP_1 PF00170.16 gi|110668807|ref|YP_658618.1| - 0.073 13.0 0.3 0.13 12.2 0.2 1.3 1 0 0 1 1 1 0 bZIP transcription factor DivIC PF04977.10 gi|110668807|ref|YP_658618.1| - 0.12 11.8 0.1 0.14 11.6 0.1 1.3 1 0 0 1 1 1 0 Septum formation initiator Med9 PF07544.8 gi|110668807|ref|YP_658618.1| - 0.14 11.8 1.0 0.23 11.2 0.7 1.3 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 NUDE_C PF04880.8 gi|110668807|ref|YP_658618.1| - 0.47 10.7 2.4 0.47 10.7 1.2 1.3 1 1 0 1 1 1 0 NUDE protein, C-terminal conserved region Phage_integrase PF00589.17 gi|110668808|ref|YP_658619.1| - 3.1e-05 23.6 0.0 4.4e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family PriCT_1 PF08708.6 gi|110668808|ref|YP_658619.1| - 0.021 14.6 0.0 0.033 13.9 0.0 1.3 1 0 0 1 1 1 0 Primase C terminal 1 (PriCT-1) Mut7-C PF01927.11 gi|110668809|ref|YP_658620.1| - 0.0013 18.7 0.0 0.0016 18.4 0.0 1.2 1 1 0 1 1 1 1 Mut7-C RNAse domain XPG_I_2 PF12813.2 gi|110668809|ref|YP_658620.1| - 0.13 11.7 0.1 0.15 11.5 0.1 1.2 1 0 0 1 1 1 0 XPG domain containing DUF433 PF04255.9 gi|110668810|ref|YP_658621.1| - 4.2e-21 74.1 0.1 6.2e-21 73.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF433) DUF4296 PF14129.1 gi|110668810|ref|YP_658621.1| - 0.08 13.1 0.1 0.091 12.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4296) DUF3380 PF11860.3 gi|110668810|ref|YP_658621.1| - 0.081 12.9 0.0 0.095 12.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3380) TipAS PF07739.8 gi|110668812|ref|YP_658623.1| - 0.15 12.3 2.6 1.6 9.0 1.4 2.7 1 1 1 2 2 2 0 TipAS antibiotic-recognition domain TrmB PF01978.14 gi|110668813|ref|YP_658624.1| - 0.0043 16.7 0.1 0.0063 16.1 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|110668813|ref|YP_658624.1| - 0.014 15.6 0.0 0.028 14.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Gam PF06064.6 gi|110668813|ref|YP_658624.1| - 0.081 13.0 0.0 0.26 11.4 0.0 1.8 1 1 1 2 2 2 0 Host-nuclease inhibitor protein Gam 4HB_MCP_1 PF12729.2 gi|110668813|ref|YP_658624.1| - 0.13 11.5 0.3 0.23 10.8 0.2 1.3 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction DinB PF05163.7 gi|110668813|ref|YP_658624.1| - 0.21 11.2 2.1 10 5.8 0.0 2.1 1 1 1 2 2 2 0 DinB family Aminotran_5 PF00266.14 gi|110668814|ref|YP_658625.1| - 4.3e-28 98.1 0.0 5.4e-28 97.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DUF1623 PF07785.6 gi|110668814|ref|YP_658625.1| - 0.14 12.1 1.2 1.3 8.9 0.1 3.0 4 1 0 4 4 4 0 Protein of unknown function (DUF1623) SelR PF01641.13 gi|110668815|ref|YP_658626.1| - 9.9e-45 151.2 0.0 1.2e-44 151.0 0.0 1.1 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.9 gi|110668815|ref|YP_658626.1| - 0.0054 16.7 0.0 0.018 15.0 0.0 1.8 1 1 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly DUF2296 PF10058.4 gi|110668815|ref|YP_658626.1| - 0.029 14.0 0.1 1.2 8.9 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Zn_Tnp_IS1595 PF12760.2 gi|110668815|ref|YP_658626.1| - 0.13 12.1 1.2 14 5.6 0.0 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|110668815|ref|YP_658626.1| - 0.76 9.1 5.5 22 4.4 0.2 3.6 3 0 0 3 3 3 0 TFIIB zinc-binding Ribosomal_L11 PF00298.14 gi|110668816|ref|YP_658627.1| - 1.7e-19 69.7 0.0 2.3e-19 69.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.9 gi|110668816|ref|YP_658627.1| - 2.2e-18 65.4 0.1 3.4e-18 64.8 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Peptidase_M42 PF05343.9 gi|110668817|ref|YP_658628.1| - 2.1e-76 256.4 1.8 2.4e-76 256.2 1.2 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|110668817|ref|YP_658628.1| - 7.1e-12 45.2 0.1 1.2e-11 44.5 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.10 gi|110668817|ref|YP_658628.1| - 3.5e-09 35.6 0.0 0.00064 18.3 0.1 3.0 3 0 0 3 3 3 3 Aminopeptidase I zinc metalloprotease (M18) Peptidase_M28 PF04389.12 gi|110668817|ref|YP_658628.1| - 5.5e-05 22.9 0.2 0.00013 21.7 0.1 1.6 1 0 0 1 1 1 1 Peptidase family M28 GHMP_kinases_N PF00288.21 gi|110668819|ref|YP_658630.1| - 1.3e-15 57.1 0.1 2.8e-15 56.1 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|110668819|ref|YP_658630.1| - 6.3e-13 48.7 0.3 5.8e-12 45.6 0.1 2.4 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|110668819|ref|YP_658630.1| - 0.00013 21.2 0.0 0.00026 20.1 0.0 1.6 1 0 0 1 1 1 1 Galactokinase galactose-binding signature AA_kinase PF00696.23 gi|110668820|ref|YP_658631.1| - 3.5e-34 118.4 1.7 4.3e-34 118.1 1.1 1.1 1 0 0 1 1 1 1 Amino acid kinase family Lactamase_B_2 PF12706.2 gi|110668821|ref|YP_658632.1| - 2.6e-21 76.0 0.1 3.2e-21 75.7 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|110668821|ref|YP_658632.1| - 2.4e-11 43.6 2.6 1.7e-10 40.8 1.6 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|110668821|ref|YP_658632.1| - 0.071 12.8 0.2 0.12 12.0 0.1 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain DEAD_assoc PF08494.6 gi|110668822|ref|YP_658633.1| - 2.4e-51 174.1 0.7 4.7e-51 173.1 0.5 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|110668822|ref|YP_658633.1| - 9.3e-29 100.0 0.0 4.7e-25 88.0 0.0 3.3 2 1 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|110668822|ref|YP_658633.1| - 9.9e-16 57.3 0.1 2.1e-14 53.1 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|110668822|ref|YP_658633.1| - 5.7e-10 39.3 0.0 1.7e-09 37.7 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|110668822|ref|YP_658633.1| - 0.0027 17.8 1.0 0.049 13.7 0.1 3.3 2 2 1 3 3 3 1 AAA domain LcrG PF07216.7 gi|110668822|ref|YP_658633.1| - 0.06 13.3 0.0 0.22 11.5 0.0 1.9 1 0 0 1 1 1 0 LcrG protein AAA_11 PF13086.1 gi|110668823|ref|YP_658634.1| - 6.9e-43 146.9 2.1 4e-22 78.9 0.8 2.8 2 1 1 3 3 3 2 AAA domain AAA_12 PF13087.1 gi|110668823|ref|YP_658634.1| - 1.1e-41 142.3 0.0 1.8e-41 141.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain Dna2 PF08696.6 gi|110668823|ref|YP_658634.1| - 4.4e-36 124.1 0.0 1.3e-35 122.5 0.0 1.7 1 1 0 1 1 1 1 DNA replication factor Dna2 AAA_30 PF13604.1 gi|110668823|ref|YP_658634.1| - 4.7e-19 68.7 5.9 2.1e-18 66.6 0.5 3.8 3 2 0 3 3 3 1 AAA domain AAA_19 PF13245.1 gi|110668823|ref|YP_658634.1| - 1.2e-13 50.6 1.7 3.8e-11 42.5 0.4 2.8 2 0 0 2 2 2 1 Part of AAA domain PDDEXK_1 PF12705.2 gi|110668823|ref|YP_658634.1| - 2.3e-11 43.5 0.0 5.5e-11 42.3 0.0 1.6 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Viral_helicase1 PF01443.13 gi|110668823|ref|YP_658634.1| - 3.2e-10 39.9 0.6 0.00056 19.5 0.1 3.3 2 1 1 3 3 3 3 Viral (Superfamily 1) RNA helicase DUF2075 PF09848.4 gi|110668823|ref|YP_658634.1| - 1.3e-06 27.6 0.0 2.9e-05 23.1 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Cas_Cas4 PF01930.12 gi|110668823|ref|YP_658634.1| - 5.2e-05 23.2 0.0 0.001 19.0 0.0 2.4 1 1 1 2 2 2 1 Domain of unknown function DUF83 UvrD-helicase PF00580.16 gi|110668823|ref|YP_658634.1| - 5.9e-05 22.5 0.0 0.0001 21.7 0.0 1.4 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain AAA_22 PF13401.1 gi|110668823|ref|YP_658634.1| - 0.00012 22.1 0.1 0.0057 16.7 0.0 3.1 2 1 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.1 gi|110668823|ref|YP_658634.1| - 0.00016 21.7 0.1 0.00054 20.0 0.0 2.0 2 0 0 2 2 1 1 UvrD-like helicase C-terminal domain ResIII PF04851.10 gi|110668823|ref|YP_658634.1| - 0.00095 19.0 0.0 0.0021 17.9 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit CbiA PF01656.18 gi|110668823|ref|YP_658634.1| - 0.00098 18.5 1.6 0.003 16.9 1.1 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain PIF1 PF05970.9 gi|110668823|ref|YP_658634.1| - 0.0015 17.5 0.0 0.17 10.7 0.0 2.2 2 0 0 2 2 2 1 PIF1-like helicase AAA_25 PF13481.1 gi|110668823|ref|YP_658634.1| - 0.0022 17.3 0.0 0.0061 15.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|110668823|ref|YP_658634.1| - 0.0028 17.6 0.7 0.012 15.5 0.2 2.4 1 1 1 2 2 2 1 AAA ATPase domain PhoH PF02562.11 gi|110668823|ref|YP_658634.1| - 0.0047 16.1 0.0 0.025 13.8 0.0 2.0 2 0 0 2 2 2 1 PhoH-like protein T2SE PF00437.15 gi|110668823|ref|YP_658634.1| - 0.0079 15.1 0.0 0.017 14.0 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_10 PF12846.2 gi|110668823|ref|YP_658634.1| - 0.01 15.2 0.0 2.1 7.6 0.0 2.5 1 1 0 2 2 2 0 AAA-like domain TrwB_AAD_bind PF10412.4 gi|110668823|ref|YP_658634.1| - 0.01 14.4 0.0 0.017 13.7 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Helicase_RecD PF05127.9 gi|110668823|ref|YP_658634.1| - 0.011 15.3 0.2 0.05 13.2 0.1 2.1 1 1 0 1 1 1 0 Helicase AAA PF00004.24 gi|110668823|ref|YP_658634.1| - 0.014 15.6 0.0 0.036 14.2 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|110668823|ref|YP_658634.1| - 0.026 14.2 0.0 0.12 12.1 0.0 2.1 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|110668823|ref|YP_658634.1| - 0.027 13.4 0.0 0.054 12.5 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_24 PF13479.1 gi|110668823|ref|YP_658634.1| - 0.028 14.0 0.2 0.13 11.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|110668823|ref|YP_658634.1| - 0.037 13.1 0.0 0.066 12.3 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SRP54 PF00448.17 gi|110668823|ref|YP_658634.1| - 0.047 13.1 0.0 0.13 11.6 0.0 1.7 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain IstB_IS21 PF01695.12 gi|110668823|ref|YP_658634.1| - 0.1 12.0 0.0 0.29 10.5 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein Peptidase_M50B PF13398.1 gi|110668825|ref|YP_658636.1| - 0.13 11.6 2.8 0.15 11.4 2.0 1.1 1 0 0 1 1 1 0 Peptidase M50B-like IncA PF04156.9 gi|110668825|ref|YP_658636.1| - 0.52 9.8 3.8 0.59 9.6 2.6 1.1 1 0 0 1 1 1 0 IncA protein DUF2342 PF10103.4 gi|110668826|ref|YP_658637.1| - 5.4e-91 305.0 1.9 6.9e-53 179.7 0.2 2.0 1 1 1 2 2 2 2 Uncharacterised conserved protein (DUF2342) Peptidase_MA_2 PF13485.1 gi|110668826|ref|YP_658637.1| - 0.79 9.7 5.4 0.27 11.2 0.8 2.3 2 1 0 2 2 2 0 Peptidase MA superfamily Ribosomal_S2 PF00318.15 gi|110668827|ref|YP_658638.1| - 7.2e-37 126.6 0.0 2.7e-18 65.9 0.1 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Enolase_C PF00113.17 gi|110668828|ref|YP_658639.1| - 3.5e-74 249.4 0.4 5.1e-74 248.8 0.3 1.2 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|110668828|ref|YP_658639.1| - 1.4e-38 131.7 0.8 1.4e-38 131.7 0.5 2.1 3 0 0 3 3 3 1 Enolase, N-terminal domain MAAL_C PF07476.6 gi|110668828|ref|YP_658639.1| - 1.3e-05 24.3 1.5 2.1e-05 23.6 0.1 1.9 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus MR_MLE PF01188.16 gi|110668828|ref|YP_658639.1| - 5.3e-05 23.6 0.1 0.00015 22.2 0.0 1.8 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|110668828|ref|YP_658639.1| - 0.00011 22.1 0.4 0.00043 20.2 0.0 2.2 2 0 0 2 2 2 1 Enolase C-terminal domain-like RNA_pol_Rpb6 PF01192.17 gi|110668829|ref|YP_658640.1| - 8.5e-20 70.2 0.0 9.1e-20 70.1 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.12 gi|110668830|ref|YP_658641.1| - 2.2e-29 101.2 0.4 2.4e-29 101.1 0.3 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit DUF2655 PF10848.3 gi|110668830|ref|YP_658641.1| - 0.11 12.3 0.1 0.14 12.0 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2655) Ribosomal_S9 PF00380.14 gi|110668831|ref|YP_658642.1| - 4.1e-36 123.8 0.1 4.6e-36 123.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.13 gi|110668832|ref|YP_658643.1| - 1.7e-18 66.9 0.0 2.3e-18 66.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18e PF00828.14 gi|110668833|ref|YP_658644.1| - 3.3e-13 50.1 0.1 4.3e-13 49.7 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 RNA_pol_A_bac PF01000.21 gi|110668834|ref|YP_658645.1| - 1.6e-18 66.8 0.0 9.8e-18 64.3 0.0 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|110668834|ref|YP_658645.1| - 4.2e-11 41.8 0.0 5.8e-11 41.3 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_S11 PF00411.14 gi|110668835|ref|YP_658646.1| - 7.1e-44 148.4 0.3 8.2e-44 148.2 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.20 gi|110668836|ref|YP_658647.1| - 4.9e-16 57.8 0.5 1.3e-14 53.3 0.0 2.3 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.14 gi|110668836|ref|YP_658647.1| - 0.00067 19.9 0.8 0.01 16.2 0.6 2.2 1 1 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain S4_2 PF13275.1 gi|110668836|ref|YP_658647.1| - 0.038 13.6 0.0 0.064 12.8 0.0 1.4 1 0 0 1 1 1 0 S4 domain ATP-synt_D PF01813.12 gi|110668836|ref|YP_658647.1| - 0.048 13.2 0.0 0.067 12.7 0.0 1.1 1 0 0 1 1 1 0 ATP synthase subunit D Ribosomal_S13 PF00416.17 gi|110668837|ref|YP_658648.1| - 4.9e-34 117.0 1.8 6.2e-34 116.6 1.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH_5 PF14520.1 gi|110668837|ref|YP_658648.1| - 0.25 11.5 1.5 0.32 11.2 0.4 2.0 1 1 1 2 2 1 0 Helix-hairpin-helix domain STT3 PF02516.9 gi|110668838|ref|YP_658649.1| - 1.2e-09 37.6 23.5 9.3e-09 34.7 15.6 2.5 2 1 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit PEGA PF08308.6 gi|110668839|ref|YP_658650.1| - 0.022 14.5 0.6 0.028 14.2 0.4 1.2 1 0 0 1 1 1 0 PEGA domain CarboxypepD_reg PF13620.1 gi|110668839|ref|YP_658650.1| - 0.067 13.2 0.8 0.11 12.5 0.5 1.6 1 1 0 1 1 1 0 Carboxypeptidase regulatory-like domain GATase PF00117.23 gi|110668840|ref|YP_658651.1| - 4.6e-20 71.8 0.0 6.3e-20 71.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|110668840|ref|YP_658651.1| - 0.00025 20.5 0.1 0.011 15.2 0.1 2.3 1 1 0 1 1 1 1 Peptidase C26 HTS PF04204.11 gi|110668840|ref|YP_658651.1| - 0.00055 18.7 0.0 0.0023 16.7 0.0 1.8 1 1 0 1 1 1 1 Homoserine O-succinyltransferase GATase_3 PF07685.9 gi|110668840|ref|YP_658651.1| - 0.0026 17.3 0.0 0.0047 16.5 0.0 1.6 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Mob_synth_C PF06463.8 gi|110668841|ref|YP_658652.1| - 9.2e-34 115.8 0.0 1.4e-33 115.2 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.16 gi|110668841|ref|YP_658652.1| - 7e-25 88.1 0.1 2.9e-24 86.1 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|110668841|ref|YP_658652.1| - 8.3e-08 32.4 0.0 2.3e-07 30.9 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|110668841|ref|YP_658652.1| - 9.9e-08 32.0 0.0 2.3e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Imm49 PF15660.1 gi|110668841|ref|YP_658652.1| - 0.0077 16.2 0.0 0.019 15.0 0.0 1.6 1 0 0 1 1 1 1 Immunity protein 49 Cytochrome_C7 PF14522.1 gi|110668841|ref|YP_658652.1| - 0.061 12.9 0.4 10 5.8 0.0 2.3 2 0 0 2 2 2 0 Cytochrome c7 Cytochrom_C PF00034.16 gi|110668841|ref|YP_658652.1| - 0.13 13.1 0.0 13 6.7 0.0 2.7 2 0 0 2 2 2 0 Cytochrome c ParA PF10609.4 gi|110668842|ref|YP_658653.1| - 5e-34 116.0 0.0 8.2e-34 115.3 0.0 1.3 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|110668842|ref|YP_658653.1| - 1.2e-19 70.4 0.0 1.9e-19 69.8 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF59 PF01883.14 gi|110668842|ref|YP_658653.1| - 1.2e-10 41.1 0.3 3.4e-10 39.7 0.2 1.8 1 0 0 1 1 1 1 Domain of unknown function DUF59 MipZ PF09140.6 gi|110668842|ref|YP_658653.1| - 1.1e-08 34.4 0.0 2e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 ATPase MipZ AAA_31 PF13614.1 gi|110668842|ref|YP_658653.1| - 1.9e-08 34.3 0.0 4.8e-07 29.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|110668842|ref|YP_658653.1| - 1.4e-05 24.2 0.4 0.00025 20.1 0.0 2.3 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.6 gi|110668842|ref|YP_658653.1| - 0.00024 20.2 0.0 0.00041 19.5 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein AAA_26 PF13500.1 gi|110668842|ref|YP_658653.1| - 0.0071 15.9 0.1 1 8.9 0.0 2.5 3 0 0 3 3 3 1 AAA domain Fer4_NifH PF00142.13 gi|110668842|ref|YP_658653.1| - 0.019 14.1 0.1 0.036 13.2 0.1 1.4 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|110668842|ref|YP_658653.1| - 0.02 14.2 0.0 0.033 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|110668842|ref|YP_658653.1| - 0.074 12.2 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 TrmB PF01978.14 gi|110668843|ref|YP_658654.1| - 0.00012 21.6 0.1 0.0003 20.4 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|110668843|ref|YP_658654.1| - 0.00047 19.7 0.1 0.0011 18.6 0.1 1.6 1 0 0 1 1 1 1 MarR family RP-C PF03428.8 gi|110668843|ref|YP_658654.1| - 0.00089 18.7 0.2 0.0018 17.7 0.2 1.5 1 1 0 1 1 1 1 Replication protein C N-terminal domain HTH_27 PF13463.1 gi|110668843|ref|YP_658654.1| - 0.0016 18.6 0.1 0.004 17.4 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|110668843|ref|YP_658654.1| - 0.0019 17.9 0.1 0.0042 16.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|110668843|ref|YP_658654.1| - 0.029 13.9 0.1 0.23 11.0 0.0 2.1 2 0 0 2 2 2 0 LexA DNA binding domain HTH_IclR PF09339.5 gi|110668843|ref|YP_658654.1| - 0.033 13.7 0.3 0.091 12.3 0.2 1.8 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF3368 PF11848.3 gi|110668844|ref|YP_658655.1| - 0.00011 21.6 0.0 0.00018 20.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) AAA_16 PF13191.1 gi|110668845|ref|YP_658656.1| - 3.3e-10 40.2 0.0 4.7e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|110668845|ref|YP_658656.1| - 5.5e-07 29.8 0.0 8.9e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|110668845|ref|YP_658656.1| - 4.2e-05 22.6 0.0 5.1e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_22 PF13401.1 gi|110668845|ref|YP_658656.1| - 0.00023 21.3 0.0 0.00037 20.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|110668845|ref|YP_658656.1| - 0.0017 17.5 0.0 0.0024 17.0 0.0 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|110668845|ref|YP_658656.1| - 0.0023 17.4 0.0 0.0029 17.1 0.0 1.2 1 0 0 1 1 1 1 Sigma-54 interaction domain Kinesin PF00225.18 gi|110668845|ref|YP_658656.1| - 0.0027 16.4 0.0 0.006 15.3 0.0 1.6 1 1 0 1 1 1 1 Kinesin motor domain AAA_19 PF13245.1 gi|110668845|ref|YP_658656.1| - 0.0029 17.3 0.0 0.0045 16.7 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_5 PF07728.9 gi|110668845|ref|YP_658656.1| - 0.008 15.9 0.0 0.015 15.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|110668845|ref|YP_658656.1| - 0.0083 15.8 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 NACHT domain Bac_DnaA PF00308.13 gi|110668845|ref|YP_658656.1| - 0.01 15.5 0.0 0.015 14.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial dnaA protein RNA_helicase PF00910.17 gi|110668845|ref|YP_658656.1| - 0.012 15.7 0.0 0.027 14.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_17 PF13207.1 gi|110668845|ref|YP_658656.1| - 0.022 15.5 0.2 0.21 12.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|110668845|ref|YP_658656.1| - 0.029 13.9 0.1 0.053 13.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|110668845|ref|YP_658656.1| - 0.041 13.4 0.0 0.074 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|110668845|ref|YP_658656.1| - 0.055 12.3 0.0 0.058 12.2 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein ABC_tran PF00005.22 gi|110668845|ref|YP_658656.1| - 0.068 13.4 0.1 0.21 11.8 0.0 1.8 1 1 1 2 2 2 0 ABC transporter Arch_ATPase PF01637.13 gi|110668845|ref|YP_658656.1| - 0.11 12.1 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA PF00004.24 gi|110668846|ref|YP_658657.1| - 0.0025 18.0 0.0 0.0041 17.3 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SOG2 PF10428.4 gi|110668846|ref|YP_658657.1| - 0.079 11.6 0.0 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 RAM signalling pathway protein NACHT PF05729.7 gi|110668846|ref|YP_658657.1| - 0.095 12.3 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 NACHT domain OrfB_IS605 PF01385.14 gi|110668847|ref|YP_658658.1| - 3.6e-25 88.7 1.7 3.6e-25 88.7 1.2 2.1 1 1 1 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|110668847|ref|YP_658658.1| - 1.2e-20 72.8 1.2 3.5e-20 71.4 0.1 2.1 2 0 0 2 2 2 1 Putative transposase DNA-binding domain RepB-RCR_reg PF10723.4 gi|110668847|ref|YP_658658.1| - 0.14 11.8 1.4 0.31 10.8 0.9 1.6 1 0 0 1 1 1 0 Replication regulatory protein RepB DUF4249 PF14054.1 gi|110668847|ref|YP_658658.1| - 0.36 10.1 3.7 2.3 7.5 0.0 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4249) Cdc6_C PF09079.6 gi|110668848|ref|YP_658659.1| - 2.4e-10 39.9 0.0 2.9e-10 39.7 0.0 1.1 1 0 0 1 1 1 1 CDC6, C terminal HTH_20 PF12840.2 gi|110668849|ref|YP_658660.1| - 0.0092 15.7 0.0 0.019 14.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|110668849|ref|YP_658660.1| - 0.012 15.3 0.1 0.27 10.9 0.0 2.6 3 0 0 3 3 3 0 MarR family HTH_5 PF01022.15 gi|110668849|ref|YP_658660.1| - 0.083 12.5 0.0 0.18 11.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|110668849|ref|YP_658660.1| - 0.095 12.4 0.0 0.25 11.0 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF555 PF04475.7 gi|110668851|ref|YP_658662.1| - 9.9e-12 44.7 0.6 1.2e-11 44.5 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) DpnD-PcfM PF14207.1 gi|110668851|ref|YP_658662.1| - 0.093 12.5 2.9 5.9 6.7 0.2 2.4 2 0 0 2 2 2 0 DpnD/PcfM-like protein Jag_N PF14804.1 gi|110668851|ref|YP_658662.1| - 0.15 12.0 1.1 1.2 9.2 0.1 2.1 2 0 0 2 2 2 0 Jag N-terminus Cdc6_C PF09079.6 gi|110668852|ref|YP_658663.1| - 8.1e-15 54.3 0.0 1.8e-14 53.1 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|110668852|ref|YP_658663.1| - 6.4e-11 42.5 0.0 3.9e-10 40.0 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|110668852|ref|YP_658663.1| - 9e-11 42.0 0.0 2.4e-10 40.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|110668852|ref|YP_658663.1| - 6e-06 26.4 0.2 4.3e-05 23.7 0.1 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|110668852|ref|YP_658663.1| - 0.00016 20.7 0.0 0.00027 19.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|110668852|ref|YP_658663.1| - 0.00045 19.7 0.0 0.00092 18.7 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_5 PF07728.9 gi|110668852|ref|YP_658663.1| - 0.0012 18.5 0.1 0.018 14.7 0.1 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|110668852|ref|YP_658663.1| - 0.003 17.7 0.0 0.017 15.2 0.0 2.3 2 0 0 2 2 2 1 RNA helicase ResIII PF04851.10 gi|110668852|ref|YP_658663.1| - 0.0035 17.1 0.0 0.012 15.5 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit RuvB_N PF05496.7 gi|110668852|ref|YP_658663.1| - 0.0045 16.0 0.1 0.14 11.1 0.0 2.8 3 0 0 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus DUF2075 PF09848.4 gi|110668852|ref|YP_658663.1| - 0.0057 15.6 0.0 0.011 14.7 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.17 gi|110668852|ref|YP_658663.1| - 0.0075 15.1 0.0 0.016 14.1 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain Sigma54_activ_2 PF14532.1 gi|110668852|ref|YP_658663.1| - 0.01 15.8 0.0 0.021 14.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_2 PF07724.9 gi|110668852|ref|YP_658663.1| - 0.018 14.9 0.0 0.051 13.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|110668852|ref|YP_658663.1| - 0.022 15.5 0.2 0.11 13.3 0.0 2.4 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|110668852|ref|YP_658663.1| - 0.034 13.8 0.0 0.068 12.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Terminase_2 PF03592.11 gi|110668852|ref|YP_658663.1| - 0.046 14.0 0.1 0.14 12.4 0.0 1.9 1 1 0 1 1 1 0 Terminase small subunit Zeta_toxin PF06414.7 gi|110668852|ref|YP_658663.1| - 0.056 12.5 0.0 0.095 11.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Myosin_head PF00063.16 gi|110668852|ref|YP_658663.1| - 0.071 11.1 0.0 0.11 10.4 0.0 1.2 1 0 0 1 1 1 0 Myosin head (motor domain) Mg_chelatase_2 PF13335.1 gi|110668852|ref|YP_658663.1| - 0.076 13.4 0.3 0.23 11.8 0.1 1.9 2 0 0 2 2 1 0 Magnesium chelatase, subunit ChlI AAA_32 PF13654.1 gi|110668852|ref|YP_658663.1| - 0.084 11.5 0.5 8 4.9 0.2 2.1 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|110668852|ref|YP_658663.1| - 0.093 12.6 0.0 0.3 10.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|110668852|ref|YP_658663.1| - 0.11 11.5 0.0 1 8.4 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DEAD PF00270.24 gi|110668852|ref|YP_658663.1| - 0.12 11.8 0.4 0.98 8.8 0.0 2.2 1 1 0 2 2 2 0 DEAD/DEAH box helicase Acetyltransf_1 PF00583.19 gi|110668854|ref|YP_658665.1| - 7.6e-15 54.7 0.1 1.2e-14 54.0 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|110668854|ref|YP_658665.1| - 1.8e-11 44.2 0.2 2.2e-11 43.8 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|110668854|ref|YP_658665.1| - 8.7e-10 38.6 0.1 1.6e-09 37.8 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|110668854|ref|YP_658665.1| - 1.4e-08 34.8 0.1 1.9e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|110668854|ref|YP_658665.1| - 6e-07 29.1 0.2 2.4e-06 27.2 0.0 1.9 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_CG PF14542.1 gi|110668854|ref|YP_658665.1| - 3.5e-05 23.5 0.0 9.6e-05 22.2 0.0 1.7 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|110668854|ref|YP_658665.1| - 7.1e-05 22.9 0.1 8.8e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|110668854|ref|YP_658665.1| - 0.0005 19.9 0.2 0.00064 19.6 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|110668854|ref|YP_658665.1| - 0.002 17.9 0.0 0.0071 16.2 0.0 1.7 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|110668854|ref|YP_658665.1| - 0.016 14.7 0.0 0.03 13.9 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF488 PF04343.8 gi|110668854|ref|YP_658665.1| - 0.054 13.8 0.9 2.1 8.7 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function, DUF488 BPD_transp_2 PF02653.11 gi|110668855|ref|YP_658666.1| - 1.4e-33 115.9 42.9 1.4e-33 115.9 29.7 1.6 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|110668856|ref|YP_658667.1| - 2.9e-41 141.2 29.7 2.9e-41 141.2 20.6 1.6 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component E1-E2_ATPase PF00122.15 gi|110668856|ref|YP_658667.1| - 10 5.1 6.5 0.61 9.0 0.0 2.2 2 1 0 2 2 2 0 E1-E2 ATPase ABC_tran PF00005.22 gi|110668857|ref|YP_658668.1| - 6.9e-32 110.6 0.0 9.3e-32 110.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110668857|ref|YP_658668.1| - 4.2e-13 49.9 4.9 6.7e-09 36.1 0.1 2.1 1 1 0 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|110668857|ref|YP_658668.1| - 2.1e-10 40.0 0.2 4.9e-10 38.8 0.1 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_29 PF13555.1 gi|110668857|ref|YP_658668.1| - 1.5e-06 27.5 0.3 2.9e-06 26.7 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|110668857|ref|YP_658668.1| - 6.9e-06 26.5 0.0 8.8e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|110668857|ref|YP_658668.1| - 0.00032 20.0 0.1 0.013 14.7 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain MukB PF04310.7 gi|110668857|ref|YP_658668.1| - 0.00047 19.5 0.2 0.00075 18.9 0.2 1.3 1 0 0 1 1 1 1 MukB N-terminal AAA_10 PF12846.2 gi|110668857|ref|YP_658668.1| - 0.0072 15.7 0.5 1.6 8.0 0.2 2.5 1 1 1 2 2 2 2 AAA-like domain AAA PF00004.24 gi|110668857|ref|YP_658668.1| - 0.014 15.5 0.0 1 9.5 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|110668857|ref|YP_658668.1| - 0.037 13.1 0.0 0.066 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|110668857|ref|YP_658668.1| - 0.042 12.9 0.0 0.072 12.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin MMR_HSR1 PF01926.18 gi|110668857|ref|YP_658668.1| - 0.054 13.4 0.0 0.094 12.6 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_15 PF13175.1 gi|110668857|ref|YP_658668.1| - 0.15 11.1 0.2 11 4.9 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.1 gi|110668857|ref|YP_658668.1| - 0.15 11.8 0.1 0.63 9.9 0.1 1.9 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|110668858|ref|YP_658669.1| - 1.2e-31 109.8 0.0 2e-31 109.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110668858|ref|YP_658669.1| - 2.8e-10 40.6 0.0 0.00031 20.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|110668858|ref|YP_658669.1| - 0.0002 20.6 1.5 0.0031 16.7 1.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain MutS_V PF00488.16 gi|110668858|ref|YP_658669.1| - 0.00027 20.4 0.0 0.00039 19.9 0.0 1.2 1 0 0 1 1 1 1 MutS domain V AAA_29 PF13555.1 gi|110668858|ref|YP_658669.1| - 0.001 18.5 0.2 0.002 17.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|110668858|ref|YP_658669.1| - 0.0016 18.7 0.0 0.0022 18.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|110668858|ref|YP_658669.1| - 0.002 18.1 0.0 0.004 17.1 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|110668858|ref|YP_658669.1| - 0.0094 15.4 1.5 0.044 13.2 0.5 2.0 1 1 0 2 2 2 1 AAA-like domain AAA_30 PF13604.1 gi|110668858|ref|YP_658669.1| - 0.018 14.6 0.1 0.039 13.5 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|110668858|ref|YP_658669.1| - 0.023 14.8 0.1 0.19 11.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|110668858|ref|YP_658669.1| - 0.026 13.2 0.1 0.04 12.6 0.0 1.2 1 0 0 1 1 1 0 ArgK protein NB-ARC PF00931.17 gi|110668858|ref|YP_658669.1| - 0.045 12.6 0.2 0.065 12.0 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.1 gi|110668858|ref|YP_658669.1| - 0.062 13.1 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|110668858|ref|YP_658669.1| - 0.069 12.8 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_15 PF13175.1 gi|110668858|ref|YP_658669.1| - 0.073 12.1 0.0 0.26 10.3 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|110668858|ref|YP_658669.1| - 0.08 12.3 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|110668858|ref|YP_658669.1| - 0.16 12.8 0.7 0.27 12.0 0.2 1.7 2 1 0 2 2 1 0 AAA domain SbcCD_C PF13558.1 gi|110668858|ref|YP_658669.1| - 5 7.1 7.4 3.4 7.6 1.5 2.5 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit DUF2064 PF09837.4 gi|110668859|ref|YP_658670.1| - 2.1e-06 27.3 0.0 3.2e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) UDG PF03167.14 gi|110668860|ref|YP_658671.1| - 3.2e-21 75.3 0.0 3.8e-21 75.1 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF539 PF04400.8 gi|110668860|ref|YP_658671.1| - 0.024 14.0 0.3 0.045 13.2 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF539) DnaJ PF00226.26 gi|110668860|ref|YP_658671.1| - 0.14 11.8 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 DnaJ domain Corona_RPol_N PF06478.8 gi|110668861|ref|YP_658672.1| - 0.045 12.4 0.0 0.048 12.3 0.0 1.0 1 0 0 1 1 1 0 Coronavirus RPol N-terminus Peripla_BP_6 PF13458.1 gi|110668862|ref|YP_658673.1| - 3.8e-28 98.8 7.8 1.1e-20 74.3 0.8 2.2 2 0 0 2 2 2 2 Periplasmic binding protein ANF_receptor PF01094.23 gi|110668862|ref|YP_658673.1| - 3e-16 59.1 1.2 7.9e-13 47.9 0.3 2.1 2 0 0 2 2 2 2 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|110668862|ref|YP_658673.1| - 0.00012 20.9 0.3 0.013 14.3 0.1 2.2 2 0 0 2 2 2 2 Periplasmic binding protein domain HTH_18 PF12833.2 gi|110668862|ref|YP_658673.1| - 0.11 12.5 0.1 1.3 9.1 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain DUF433 PF04255.9 gi|110668863|ref|YP_658674.1| - 1.1e-07 31.1 0.1 2e-07 30.3 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF433) DUF4296 PF14129.1 gi|110668863|ref|YP_658674.1| - 0.032 14.3 0.0 0.036 14.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4296) Amidohydro_2 PF04909.9 gi|110668865|ref|YP_658676.1| - 3.3e-34 118.6 1.2 4.2e-34 118.3 0.8 1.1 1 0 0 1 1 1 1 Amidohydrolase DUF59 PF01883.14 gi|110668866|ref|YP_658677.1| - 2.1e-12 46.8 0.0 4.7e-12 45.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF59 GSP_synth PF03738.9 gi|110668868|ref|YP_658679.1| - 0.057 13.6 0.0 0.06 13.6 0.0 1.1 1 0 0 1 1 1 0 Glutathionylspermidine synthase preATP-grasp FAD_binding_2 PF00890.19 gi|110668869|ref|YP_658680.1| - 0.067 12.0 0.1 0.076 11.8 0.1 1.0 1 0 0 1 1 1 0 FAD binding domain YcfA PF07927.7 gi|110668871|ref|YP_658682.1| - 1.4e-09 37.7 0.0 2.2e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 YcfA-like protein HTH_20 PF12840.2 gi|110668872|ref|YP_658683.1| - 0.00015 21.5 0.0 0.00019 21.1 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|110668872|ref|YP_658683.1| - 0.00022 21.1 0.0 0.00031 20.6 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|110668872|ref|YP_658683.1| - 0.00032 20.2 0.0 0.00043 19.8 0.0 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|110668872|ref|YP_658683.1| - 0.00036 19.8 0.0 0.00048 19.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|110668872|ref|YP_658683.1| - 0.00067 19.3 0.0 0.00084 18.9 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FaeA PF04703.7 gi|110668872|ref|YP_658683.1| - 0.00075 19.6 0.0 0.00089 19.3 0.0 1.1 1 0 0 1 1 1 1 FaeA-like protein HTH_30 PF13556.1 gi|110668872|ref|YP_658683.1| - 0.0012 18.4 0.0 0.0015 18.0 0.0 1.2 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.2 gi|110668872|ref|YP_658683.1| - 0.0021 17.6 0.0 0.0028 17.2 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_10 PF04967.7 gi|110668872|ref|YP_658683.1| - 0.0022 17.5 0.0 0.004 16.7 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_AsnC-type PF13404.1 gi|110668872|ref|YP_658683.1| - 0.0039 16.6 0.0 0.0056 16.1 0.0 1.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_1 PF00126.22 gi|110668872|ref|YP_658683.1| - 0.004 16.8 0.0 0.0056 16.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR PF01047.17 gi|110668872|ref|YP_658683.1| - 0.0044 16.6 0.0 0.0056 16.3 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|110668872|ref|YP_658683.1| - 0.026 14.2 0.0 0.03 13.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.11 gi|110668872|ref|YP_658683.1| - 0.029 14.4 0.0 0.044 13.8 0.0 1.3 1 1 0 1 1 1 0 Penicillinase repressor HTH_8 PF02954.14 gi|110668872|ref|YP_658683.1| - 0.057 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_12 PF08461.5 gi|110668872|ref|YP_658683.1| - 0.16 11.7 0.3 0.47 10.2 0.1 1.9 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain Epimerase PF01370.16 gi|110668873|ref|YP_658684.1| - 7.4e-21 74.6 0.1 1.9e-20 73.2 0.0 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|110668873|ref|YP_658684.1| - 0.00013 21.0 0.1 0.0029 16.5 0.0 2.3 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|110668873|ref|YP_658684.1| - 0.00022 21.1 0.0 0.0004 20.3 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase RmlD_sub_bind PF04321.12 gi|110668873|ref|YP_658684.1| - 0.00035 19.5 0.2 0.03 13.2 0.1 3.2 2 2 1 3 3 3 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|110668873|ref|YP_658684.1| - 0.0096 14.6 0.1 0.021 13.5 0.1 1.7 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family KR PF08659.5 gi|110668873|ref|YP_658684.1| - 0.12 11.9 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 KR domain Epimerase PF01370.16 gi|110668874|ref|YP_658685.1| - 9.8e-51 172.4 0.1 1.2e-50 172.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|110668874|ref|YP_658685.1| - 2.9e-31 108.2 0.0 3.8e-31 107.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|110668874|ref|YP_658685.1| - 1.8e-18 66.4 0.1 2.2e-18 66.1 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|110668874|ref|YP_658685.1| - 6.8e-16 58.8 0.0 9.7e-16 58.2 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|110668874|ref|YP_658685.1| - 2.9e-14 52.6 0.0 1.6e-13 50.2 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|110668874|ref|YP_658685.1| - 6.8e-14 51.3 0.1 2.6e-13 49.4 0.0 1.8 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|110668874|ref|YP_658685.1| - 7.4e-08 32.4 0.2 1.3e-07 31.6 0.1 1.4 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|110668874|ref|YP_658685.1| - 0.00025 20.7 0.0 0.00039 20.1 0.0 1.4 1 0 0 1 1 1 1 KR domain NmrA PF05368.8 gi|110668874|ref|YP_658685.1| - 0.0004 19.6 0.0 0.0009 18.5 0.0 1.6 1 1 0 1 1 1 1 NmrA-like family Saccharop_dh PF03435.13 gi|110668874|ref|YP_658685.1| - 0.004 16.1 0.0 0.0062 15.5 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase AP_endonuc_2 PF01261.19 gi|110668874|ref|YP_658685.1| - 0.13 11.5 0.5 1.1 8.5 0.4 2.3 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Ldh_1_N PF00056.18 gi|110668874|ref|YP_658685.1| - 0.14 11.9 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Epimerase PF01370.16 gi|110668875|ref|YP_658686.1| - 2.2e-36 125.4 0.0 2.7e-36 125.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|110668875|ref|YP_658686.1| - 9.1e-25 87.1 0.1 1.1e-24 86.8 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|110668875|ref|YP_658686.1| - 3.1e-18 65.4 0.0 1.2e-17 63.5 0.0 1.8 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|110668875|ref|YP_658686.1| - 7.3e-16 57.9 0.0 3.9e-15 55.5 0.0 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|110668875|ref|YP_658686.1| - 1.7e-10 40.2 0.0 5.9e-08 31.9 0.0 2.3 2 0 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|110668875|ref|YP_658686.1| - 5e-08 33.1 0.3 2.5e-07 30.8 0.2 2.2 1 1 0 1 1 1 1 NADH(P)-binding Semialdhyde_dh PF01118.19 gi|110668875|ref|YP_658686.1| - 6.1e-05 23.3 0.1 0.00014 22.1 0.0 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NmrA PF05368.8 gi|110668875|ref|YP_658686.1| - 0.00047 19.4 0.5 0.0019 17.4 0.2 2.0 2 0 0 2 2 2 1 NmrA-like family DapB_N PF01113.15 gi|110668875|ref|YP_658686.1| - 0.00051 19.9 0.8 0.00082 19.2 0.1 1.6 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Ldh_1_N PF00056.18 gi|110668875|ref|YP_658686.1| - 0.0046 16.7 0.4 0.008 16.0 0.3 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|110668875|ref|YP_658686.1| - 0.005 15.8 0.4 0.0076 15.2 0.2 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase adh_short PF00106.20 gi|110668875|ref|YP_658686.1| - 0.011 15.6 2.3 0.046 13.6 1.7 1.9 2 1 0 2 2 2 0 short chain dehydrogenase Epimerase_Csub PF13950.1 gi|110668875|ref|YP_658686.1| - 0.067 13.1 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit TrkA_N PF02254.13 gi|110668875|ref|YP_658686.1| - 0.19 11.7 1.9 0.36 10.8 0.2 2.0 2 0 0 2 2 2 0 TrkA-N domain TrmB PF01978.14 gi|110668876|ref|YP_658687.1| - 1.8e-17 62.7 0.0 5.3e-17 61.2 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|110668876|ref|YP_658687.1| - 0.0031 17.0 0.0 0.0079 15.7 0.0 1.6 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|110668876|ref|YP_658687.1| - 0.007 15.7 0.0 0.02 14.2 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|110668876|ref|YP_658687.1| - 0.043 13.9 0.0 0.091 12.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator RHH_3 PF12651.2 gi|110668876|ref|YP_658687.1| - 0.05 13.3 0.5 8.6 6.1 0.0 3.2 3 0 0 3 3 3 0 Ribbon-helix-helix domain YaeQ PF07152.7 gi|110668876|ref|YP_658687.1| - 0.05 12.9 0.0 0.22 10.8 0.0 1.9 2 1 1 3 3 3 0 YaeQ protein NTP_transferase PF00483.18 gi|110668877|ref|YP_658688.1| - 1.3e-37 129.4 0.0 1.6e-37 129.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|110668877|ref|YP_658688.1| - 2.9e-14 53.4 0.0 5.9e-14 52.4 0.0 1.6 2 0 0 2 2 2 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|110668877|ref|YP_658688.1| - 7.7e-14 50.4 15.7 2.1e-07 30.1 1.2 4.9 2 2 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|110668877|ref|YP_658688.1| - 2.4e-07 30.1 15.5 0.0008 18.9 0.9 4.3 3 1 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|110668877|ref|YP_658688.1| - 0.018 14.5 0.0 0.038 13.5 0.0 1.4 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SIS PF01380.17 gi|110668878|ref|YP_658689.1| - 4.8e-51 171.7 0.2 2.2e-28 98.4 0.1 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|110668878|ref|YP_658689.1| - 2.9e-25 88.7 0.1 6e-25 87.7 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|110668878|ref|YP_658689.1| - 1e-21 76.9 0.0 2.1e-21 75.9 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|110668878|ref|YP_658689.1| - 4.8e-19 68.2 0.1 5.7e-14 51.5 0.0 2.5 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_4 PF13230.1 gi|110668878|ref|YP_658689.1| - 0.00038 19.2 0.0 0.00063 18.5 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|110668878|ref|YP_658689.1| - 0.005 16.5 0.0 0.067 12.9 0.0 2.3 2 0 0 2 2 2 1 SIS domain DUF4154 PF13689.1 gi|110668878|ref|YP_658689.1| - 0.0056 16.3 0.0 0.062 12.9 0.0 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF4154) NTP_transferase PF00483.18 gi|110668880|ref|YP_658691.1| - 1.2e-39 136.0 0.0 1.8e-39 135.5 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|110668880|ref|YP_658691.1| - 2.7e-13 50.2 0.0 4.5e-13 49.5 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|110668880|ref|YP_658691.1| - 1e-10 40.6 15.7 4.6e-07 29.0 0.9 4.4 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|110668880|ref|YP_658691.1| - 0.012 15.1 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TrmB PF01978.14 gi|110668881|ref|YP_658692.1| - 3.7e-05 23.3 0.2 4.5e-05 23.0 0.1 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|110668881|ref|YP_658692.1| - 0.0023 17.4 0.3 0.0029 17.1 0.2 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|110668881|ref|YP_658692.1| - 0.0075 16.2 0.1 0.0098 15.8 0.0 1.1 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein HTH_20 PF12840.2 gi|110668881|ref|YP_658692.1| - 0.009 15.7 0.2 0.011 15.5 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|110668881|ref|YP_658692.1| - 0.0091 15.4 0.0 0.011 15.2 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_Mga PF08280.6 gi|110668881|ref|YP_658692.1| - 0.026 14.2 0.7 0.035 13.8 0.5 1.2 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain MarR PF01047.17 gi|110668881|ref|YP_658692.1| - 0.033 13.8 0.2 0.038 13.6 0.1 1.2 1 0 0 1 1 1 0 MarR family PadR PF03551.9 gi|110668881|ref|YP_658692.1| - 0.037 13.7 0.1 0.052 13.3 0.1 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|110668881|ref|YP_658692.1| - 0.086 13.1 0.1 0.1 12.9 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|110668881|ref|YP_658692.1| - 0.12 12.0 0.2 0.17 11.5 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family FAD_binding_2 PF00890.19 gi|110668882|ref|YP_658693.1| - 2.8e-124 415.1 6.9 2.8e-124 415.1 4.8 1.8 2 0 0 2 2 2 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|110668882|ref|YP_658693.1| - 2.1e-39 134.3 0.3 3.2e-39 133.7 0.2 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.19 gi|110668882|ref|YP_658693.1| - 7.4e-09 34.9 2.6 7.1e-07 28.4 1.7 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|110668882|ref|YP_658693.1| - 4.5e-07 29.9 12.5 3.2e-06 27.1 6.4 3.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|110668882|ref|YP_658693.1| - 0.00015 20.3 2.6 0.00017 20.1 0.7 1.9 3 0 0 3 3 3 1 HI0933-like protein Thi4 PF01946.12 gi|110668882|ref|YP_658693.1| - 0.00054 19.1 2.0 0.0033 16.5 0.3 2.5 3 0 0 3 3 3 1 Thi4 family GIDA PF01134.17 gi|110668882|ref|YP_658693.1| - 0.0019 17.1 3.6 0.0019 17.1 2.5 1.9 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|110668882|ref|YP_658693.1| - 0.0036 16.4 7.1 0.0036 16.4 4.9 2.0 2 1 0 2 2 2 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.16 gi|110668882|ref|YP_658693.1| - 0.0037 16.8 0.1 0.0086 15.6 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.14 gi|110668882|ref|YP_658693.1| - 0.0071 15.4 1.0 0.013 14.5 0.7 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_7 PF13241.1 gi|110668882|ref|YP_658693.1| - 0.022 15.0 0.0 0.052 13.8 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox_3 PF13738.1 gi|110668882|ref|YP_658693.1| - 0.036 14.1 0.7 0.098 12.6 0.5 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|110668882|ref|YP_658693.1| - 0.045 13.7 0.5 0.18 11.8 0.3 2.1 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|110668882|ref|YP_658693.1| - 0.096 13.1 2.0 0.22 11.9 0.7 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Fer2_3 PF13085.1 gi|110668883|ref|YP_658694.1| - 1.1e-33 115.3 1.1 3.2e-33 113.8 0.0 2.1 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|110668883|ref|YP_658694.1| - 2.3e-11 43.5 4.2 4.7e-11 42.5 2.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|110668883|ref|YP_658694.1| - 2.8e-06 27.5 3.9 7e-06 26.2 2.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|110668883|ref|YP_658694.1| - 1.3e-05 25.3 5.6 1.3e-05 25.3 3.9 2.0 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|110668883|ref|YP_658694.1| - 1.7e-05 25.0 5.5 7.7e-05 22.9 3.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|110668883|ref|YP_658694.1| - 5.8e-05 23.4 6.8 0.051 14.0 0.1 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|110668883|ref|YP_658694.1| - 0.00011 21.9 7.4 0.00026 20.7 5.1 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain YtkA PF13115.1 gi|110668883|ref|YP_658694.1| - 0.005 17.1 1.1 0.012 15.9 0.0 2.2 3 0 0 3 3 3 1 YtkA-like Fer4_2 PF12797.2 gi|110668883|ref|YP_658694.1| - 0.0065 16.3 8.3 0.011 15.6 0.8 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_20 PF14691.1 gi|110668883|ref|YP_658694.1| - 0.033 13.7 6.0 0.93 9.1 0.2 2.4 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.1 gi|110668883|ref|YP_658694.1| - 0.11 13.2 9.5 1.1 10.0 1.8 2.6 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|110668883|ref|YP_658694.1| - 0.17 11.7 9.6 0.25 11.2 1.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|110668883|ref|YP_658694.1| - 0.93 9.2 8.8 2.6 7.7 1.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|110668883|ref|YP_658694.1| - 1.5 9.3 14.1 1.3 9.5 1.6 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|110668883|ref|YP_658694.1| - 8.8 6.2 10.0 1.2e+02 2.5 7.0 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|110668883|ref|YP_658694.1| - 9.6 6.8 9.1 27 5.4 2.0 2.9 1 1 1 2 2 2 0 4Fe-4S single cluster domain Sdh_cyt PF01127.17 gi|110668884|ref|YP_658695.1| - 2.3e-11 43.5 7.6 2.7e-11 43.3 5.3 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FA_hydroxylase PF04116.8 gi|110668884|ref|YP_658695.1| - 0.076 13.4 5.8 0.1 13.0 4.0 1.4 1 1 0 1 1 1 0 Fatty acid hydroxylase superfamily Colicin_V PF02674.11 gi|110668884|ref|YP_658695.1| - 0.33 10.8 5.8 0.4 10.5 4.0 1.1 1 0 0 1 1 1 0 Colicin V production protein DUF3040 PF11239.3 gi|110668884|ref|YP_658695.1| - 5.9 7.0 6.9 4.8 7.2 0.9 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) Sdh_cyt PF01127.17 gi|110668885|ref|YP_658696.1| - 2.7e-22 78.8 4.9 3.1e-22 78.6 3.4 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Ferric_reduct PF01794.14 gi|110668885|ref|YP_658696.1| - 0.081 13.0 5.6 0.13 12.3 3.9 1.5 1 1 0 1 1 1 0 Ferric reductase like transmembrane component BH4 PF02180.12 gi|110668885|ref|YP_658696.1| - 0.1 12.1 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Bcl-2 homology region 4 PgaD PF13994.1 gi|110668885|ref|YP_658696.1| - 0.17 11.3 4.0 0.28 10.6 2.8 1.3 1 0 0 1 1 1 0 PgaD-like protein Tox-ODYAM1 PF15642.1 gi|110668885|ref|YP_658696.1| - 0.17 10.4 0.1 0.24 10.0 0.1 1.3 1 1 0 1 1 1 0 Toxin in Odyssella and Amoebophilus DUF457 PF04307.9 gi|110668886|ref|YP_658697.1| - 1.8e-05 24.1 4.3 2.3e-05 23.7 3.0 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) CytB6-F_Fe-S PF08802.5 gi|110668886|ref|YP_658697.1| - 0.14 12.1 0.9 0.3 11.1 0.0 2.0 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit EamA PF00892.15 gi|110668886|ref|YP_658697.1| - 2 8.4 8.1 0.57 10.2 1.8 2.1 1 1 1 2 2 2 0 EamA-like transporter family SdpI PF13630.1 gi|110668886|ref|YP_658697.1| - 5 6.9 6.0 0.82 9.4 0.7 2.1 2 0 0 2 2 2 0 SdpI/YhfL protein family SpoVR PF04293.8 gi|110668888|ref|YP_658699.1| - 1.5e-85 287.1 7.1 4.5e-71 239.4 0.2 2.2 2 0 0 2 2 2 2 SpoVR like protein DUF444 PF04285.7 gi|110668889|ref|YP_658700.1| - 7.7e-93 311.4 0.1 1.1e-92 310.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF444) AAA_PrkA PF08298.6 gi|110668890|ref|YP_658701.1| - 1.4e-13 50.3 0.0 1.2e-08 34.1 0.0 3.8 2 1 0 2 2 2 2 PrkA AAA domain PrkA PF06798.7 gi|110668890|ref|YP_658701.1| - 2.1e-09 37.0 1.2 4.7e-09 35.8 0.1 2.1 2 1 0 2 2 2 1 PrkA serine protein kinase C-terminal domain PrkA PF06798.7 gi|110668891|ref|YP_658702.1| - 4.5e-79 265.3 5.2 8.8e-79 264.3 3.6 1.5 1 0 0 1 1 1 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.6 gi|110668891|ref|YP_658702.1| - 6.5e-66 222.4 0.0 1.1e-65 221.6 0.0 1.3 1 0 0 1 1 1 1 PrkA AAA domain AAA_5 PF07728.9 gi|110668891|ref|YP_658702.1| - 0.028 14.1 0.4 3.1 7.5 0.3 2.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RecX PF02631.11 gi|110668891|ref|YP_658702.1| - 0.076 13.2 1.2 4.5 7.5 0.8 2.5 1 1 0 1 1 1 0 RecX family UPF0179 PF03684.8 gi|110668892|ref|YP_658703.1| - 1.3e-49 167.4 0.2 1.5e-49 167.2 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.1 gi|110668892|ref|YP_658703.1| - 0.0019 18.1 0.3 0.014 15.3 0.0 2.1 2 0 0 2 2 2 1 Transposase DDE domain AstE_AspA PF04952.9 gi|110668893|ref|YP_658704.1| - 1e-14 54.1 0.0 2e-14 53.2 0.0 1.5 1 1 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family DUF309 PF03745.9 gi|110668894|ref|YP_658705.1| - 6.7e-14 51.0 0.2 9.2e-14 50.6 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF309) RPE65 PF03055.10 gi|110668895|ref|YP_658706.1| - 1.7e-108 363.3 0.0 1.9e-108 363.1 0.0 1.0 1 0 0 1 1 1 1 Retinal pigment epithelial membrane protein DUF3735 PF12537.3 gi|110668897|ref|YP_658708.1| - 0.12 12.4 0.3 0.2 11.7 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3735) Amidohydro_1 PF01979.15 gi|110668898|ref|YP_658709.1| - 4e-22 79.2 0.5 3.1e-20 73.1 0.3 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|110668898|ref|YP_658709.1| - 3.1e-08 33.9 7.9 9.6e-08 32.3 5.5 2.0 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|110668898|ref|YP_658709.1| - 4.2e-07 29.6 0.1 9.2e-07 28.6 0.1 1.7 1 0 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|110668898|ref|YP_658709.1| - 1.9e-05 23.7 0.0 3e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.6 gi|110668898|ref|YP_658709.1| - 0.0098 15.1 7.7 0.27 10.3 1.6 2.9 1 1 1 2 2 2 2 Amidohydrolase family HD PF01966.17 gi|110668899|ref|YP_658710.1| - 8.4e-11 41.9 0.6 1.9e-10 40.8 0.4 1.6 1 0 0 1 1 1 1 HD domain UPF0052 PF01933.13 gi|110668900|ref|YP_658711.1| - 4.3e-40 137.9 0.2 5.4e-40 137.5 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 Dus PF01207.12 gi|110668901|ref|YP_658712.1| - 3.6e-05 22.7 1.9 0.00019 20.3 1.3 1.9 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) CitG PF01874.11 gi|110668902|ref|YP_658713.1| - 3.4e-59 200.3 3.4 4.1e-59 200.0 2.3 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.7 gi|110668903|ref|YP_658714.1| - 2.1e-35 121.8 0.0 2e-30 105.6 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF447) Ribosomal_S17e PF00833.13 gi|110668904|ref|YP_658715.1| - 1.5e-13 50.5 0.0 1.8e-13 50.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S17 DUF4019 PF13211.1 gi|110668904|ref|YP_658715.1| - 0.026 14.7 0.0 0.028 14.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4019) PemK PF02452.12 gi|110668905|ref|YP_658716.1| - 0.01 16.0 0.0 0.012 15.7 0.0 1.1 1 0 0 1 1 1 0 PemK-like protein Carboxyl_trans PF01039.17 gi|110668906|ref|YP_658717.1| - 3.7e-199 662.1 0.0 4.2e-199 661.9 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|110668906|ref|YP_658717.1| - 0.0095 15.1 0.0 0.03 13.5 0.0 1.7 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) Zn-ribbon_8 PF09723.5 gi|110668907|ref|YP_658718.1| - 0.0053 16.6 0.7 1.5 8.8 0.0 2.1 1 1 1 2 2 2 2 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|110668907|ref|YP_658718.1| - 0.019 15.2 0.2 0.027 14.7 0.1 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar DUF951 PF06107.6 gi|110668907|ref|YP_658718.1| - 0.029 13.8 0.2 0.037 13.5 0.1 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF951) zf-Di19 PF05605.7 gi|110668907|ref|YP_658718.1| - 0.043 13.9 0.7 0.081 13.0 0.5 1.4 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_2 PF13240.1 gi|110668907|ref|YP_658718.1| - 0.081 12.4 0.3 6 6.4 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-C4pol PF14260.1 gi|110668907|ref|YP_658718.1| - 0.093 12.7 1.0 2.6 8.1 0.6 2.0 1 1 1 2 2 2 0 C4-type zinc-finger of DNA polymerase delta DZR PF12773.2 gi|110668907|ref|YP_658718.1| - 0.095 12.5 1.2 0.21 11.4 0.8 1.6 1 1 0 1 1 1 0 Double zinc ribbon Rubredoxin PF00301.15 gi|110668907|ref|YP_658718.1| - 0.1 12.5 1.2 0.21 11.5 0.8 1.6 1 1 0 1 1 1 0 Rubredoxin zf-ribbon_3 PF13248.1 gi|110668907|ref|YP_658718.1| - 0.18 11.0 2.3 2 7.7 1.6 2.1 1 1 0 1 1 1 0 zinc-ribbon domain AhpC-TSA PF00578.16 gi|110668908|ref|YP_658719.1| - 2.7e-31 107.8 0.0 3.1e-31 107.6 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|110668908|ref|YP_658719.1| - 4.9e-21 74.8 0.0 5.6e-21 74.6 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|110668908|ref|YP_658719.1| - 0.0045 16.8 0.0 0.15 12.0 0.0 2.1 2 0 0 2 2 2 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.7 gi|110668908|ref|YP_658719.1| - 0.013 14.9 0.0 0.017 14.5 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) AdoMet_dc PF02675.10 gi|110668908|ref|YP_658719.1| - 0.15 11.9 0.0 0.23 11.3 0.0 1.2 1 0 0 1 1 1 0 S-adenosylmethionine decarboxylase ILVD_EDD PF00920.16 gi|110668909|ref|YP_658720.1| - 8.4e-209 694.2 3.1 9.6e-209 694.1 2.1 1.0 1 0 0 1 1 1 1 Dehydratase family MoCF_biosynth PF00994.19 gi|110668910|ref|YP_658721.1| - 2.2e-27 95.2 0.9 3.1e-27 94.7 0.6 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain TIM-br_sig_trns PF09370.5 gi|110668910|ref|YP_658721.1| - 0.034 13.2 0.5 0.048 12.7 0.3 1.2 1 0 0 1 1 1 0 TIM-barrel signal transduction protein Kinase-PPPase PF03618.9 gi|110668910|ref|YP_658721.1| - 0.053 13.0 0.4 0.073 12.5 0.3 1.2 1 0 0 1 1 1 0 Kinase/pyrophosphorylase Zip PF02535.17 gi|110668910|ref|YP_658721.1| - 1.6 7.6 6.2 2 7.3 4.3 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter HTH_5 PF01022.15 gi|110668911|ref|YP_658722.1| - 6.6e-05 22.4 0.0 0.00012 21.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|110668911|ref|YP_658722.1| - 0.00014 21.5 0.1 0.00026 20.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.2 gi|110668911|ref|YP_658722.1| - 0.0084 15.8 0.0 0.019 14.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|110668911|ref|YP_658722.1| - 0.011 15.4 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|110668911|ref|YP_658722.1| - 0.02 14.5 0.0 0.043 13.4 0.0 1.5 1 0 0 1 1 1 0 HTH domain MarR_2 PF12802.2 gi|110668911|ref|YP_658722.1| - 0.031 13.9 0.0 0.063 12.9 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.1 gi|110668911|ref|YP_658722.1| - 0.067 12.9 0.1 0.43 10.4 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain GntR PF00392.16 gi|110668911|ref|YP_658722.1| - 0.073 12.5 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.14 gi|110668911|ref|YP_658722.1| - 0.14 12.1 0.0 0.58 10.1 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.1 gi|110668911|ref|YP_658722.1| - 0.16 12.1 0.0 0.34 11.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain ADH_zinc_N PF00107.21 gi|110668912|ref|YP_658723.1| - 1.5e-38 131.2 0.1 2.6e-38 130.5 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|110668912|ref|YP_658723.1| - 1.7e-21 77.4 0.0 3.8e-21 76.3 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|110668912|ref|YP_658723.1| - 6.3e-20 70.9 0.0 1.4e-19 69.8 0.0 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain DapB_N PF01113.15 gi|110668912|ref|YP_658723.1| - 0.0016 18.3 0.1 0.0033 17.3 0.1 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus AlaDh_PNT_C PF01262.16 gi|110668912|ref|YP_658723.1| - 0.0061 16.1 0.3 0.013 15.0 0.1 1.6 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.1 gi|110668912|ref|YP_658723.1| - 0.0066 16.4 0.1 0.011 15.8 0.1 1.4 1 0 0 1 1 1 1 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|110668912|ref|YP_658723.1| - 0.013 15.3 0.2 0.027 14.2 0.1 1.5 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DUF2493 PF10686.4 gi|110668912|ref|YP_658723.1| - 0.068 12.7 0.4 0.17 11.4 0.3 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2493) Semialdhyde_dh PF01118.19 gi|110668912|ref|YP_658723.1| - 0.11 12.8 0.2 0.19 12.0 0.2 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Presenilin PF01080.12 gi|110668913|ref|YP_658724.1| - 0.11 11.2 1.2 0.13 11.0 0.9 1.0 1 0 0 1 1 1 0 Presenilin eRF1_2 PF03464.10 gi|110668915|ref|YP_658726.1| - 0.00016 22.0 0.0 0.00038 20.8 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 2 Tropomyosin_1 PF12718.2 gi|110668915|ref|YP_658726.1| - 0.0036 17.1 12.5 0.0047 16.7 5.4 2.2 2 0 0 2 2 2 1 Tropomyosin like Laminin_II PF06009.7 gi|110668915|ref|YP_658726.1| - 0.0052 16.5 3.2 0.016 14.9 2.2 1.7 1 0 0 1 1 1 1 Laminin Domain II DivIC PF04977.10 gi|110668915|ref|YP_658726.1| - 0.092 12.2 12.0 0.27 10.7 2.4 2.5 1 1 1 2 2 2 0 Septum formation initiator Mnd1 PF03962.10 gi|110668915|ref|YP_658726.1| - 0.15 11.7 13.8 0.02 14.5 6.6 1.7 2 0 0 2 2 2 0 Mnd1 family Fmp27_WPPW PF10359.4 gi|110668915|ref|YP_658726.1| - 0.23 9.8 9.0 0.06 11.7 3.6 1.7 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain GAS PF13851.1 gi|110668915|ref|YP_658726.1| - 0.53 9.4 10.6 0.16 11.1 4.9 1.8 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding Herpes_UL36 PF03586.8 gi|110668915|ref|YP_658726.1| - 0.65 9.0 0.0 0.65 9.0 0.0 2.2 2 1 0 2 2 2 0 Herpesvirus UL36 tegument protein TMF_DNA_bd PF12329.3 gi|110668915|ref|YP_658726.1| - 0.86 9.4 12.0 2.4 8.0 8.3 1.7 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Tropomyosin PF00261.15 gi|110668915|ref|YP_658726.1| - 1.2 8.1 19.1 0.1 11.6 7.7 2.1 2 0 0 2 2 2 0 Tropomyosin CALCOCO1 PF07888.6 gi|110668915|ref|YP_658726.1| - 1.3 7.2 12.0 0.65 8.2 5.5 1.9 2 0 0 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like CENP-F_leu_zip PF10473.4 gi|110668915|ref|YP_658726.1| - 1.9 8.3 18.4 1.4 8.7 4.3 2.9 2 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 IncA PF04156.9 gi|110668915|ref|YP_658726.1| - 2.9 7.4 18.3 0.22 11.1 8.7 1.9 2 0 0 2 2 2 0 IncA protein Mei5 PF10376.4 gi|110668915|ref|YP_658726.1| - 2.9 7.3 12.2 1.3 8.5 6.5 1.7 2 0 0 2 2 2 0 Double-strand recombination repair protein DUF1192 PF06698.6 gi|110668915|ref|YP_658726.1| - 2.9 7.7 12.9 10 5.9 1.2 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) Ax_dynein_light PF10211.4 gi|110668915|ref|YP_658726.1| - 3.2 7.5 15.0 6.4 6.5 3.4 2.9 2 1 1 3 3 3 0 Axonemal dynein light chain FadA PF09403.5 gi|110668915|ref|YP_658726.1| - 7.3 6.6 12.3 7.8 6.5 6.7 2.1 2 0 0 2 2 2 0 Adhesion protein FadA APG6 PF04111.7 gi|110668915|ref|YP_658726.1| - 7.9 5.4 12.5 0.88 8.5 5.6 1.6 2 0 0 2 2 2 0 Autophagy protein Apg6 DUF4407 PF14362.1 gi|110668915|ref|YP_658726.1| - 9.5 5.0 9.1 6.9 5.5 4.5 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) LTXXQ PF07813.7 gi|110668916|ref|YP_658727.1| - 0.11 12.9 0.2 0.24 11.8 0.2 1.5 1 0 0 1 1 1 0 LTXXQ motif family protein PspA_IM30 PF04012.7 gi|110668917|ref|YP_658728.1| - 3.2e-33 114.9 31.9 3.2e-33 114.9 22.1 1.4 2 0 0 2 2 2 1 PspA/IM30 family MAD PF05557.8 gi|110668917|ref|YP_658728.1| - 0.00074 17.7 26.0 0.0012 17.0 18.0 1.3 1 0 0 1 1 1 1 Mitotic checkpoint protein Snf7 PF03357.16 gi|110668917|ref|YP_658728.1| - 0.0023 17.3 16.8 0.0023 17.3 11.6 3.3 1 1 2 3 3 3 2 Snf7 Spc7 PF08317.6 gi|110668917|ref|YP_658728.1| - 0.0027 16.4 23.6 0.0027 16.4 16.3 2.2 1 1 1 2 2 2 1 Spc7 kinetochore protein ERM PF00769.14 gi|110668917|ref|YP_658728.1| - 0.003 17.1 38.7 0.003 17.1 26.8 1.6 1 1 1 2 2 2 1 Ezrin/radixin/moesin family DUF4200 PF13863.1 gi|110668917|ref|YP_658728.1| - 0.042 13.8 35.9 0.26 11.2 3.7 3.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4200) AAA_13 PF13166.1 gi|110668917|ref|YP_658728.1| - 0.044 12.2 24.1 0.021 13.3 15.0 1.6 1 1 0 1 1 1 0 AAA domain WXG100 PF06013.7 gi|110668917|ref|YP_658728.1| - 0.055 13.4 18.6 0.3 11.1 3.5 3.0 2 1 1 3 3 3 0 Proteins of 100 residues with WXG DUF972 PF06156.8 gi|110668917|ref|YP_658728.1| - 0.11 12.9 29.3 0.41 11.0 6.7 3.6 1 1 2 3 3 3 0 Protein of unknown function (DUF972) STAT_alpha PF01017.15 gi|110668917|ref|YP_658728.1| - 0.12 12.1 19.2 0.72 9.5 2.2 3.1 1 1 1 3 3 3 0 STAT protein, all-alpha domain DUF3584 PF12128.3 gi|110668917|ref|YP_658728.1| - 0.18 9.0 33.4 0.09 10.1 21.9 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) IncA PF04156.9 gi|110668917|ref|YP_658728.1| - 0.24 10.9 33.9 1.4 8.5 4.9 3.1 1 1 2 3 3 3 0 IncA protein DUF3810 PF12725.2 gi|110668917|ref|YP_658728.1| - 0.37 9.6 14.0 0.022 13.6 2.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3810) TBPIP PF07106.8 gi|110668917|ref|YP_658728.1| - 0.48 9.9 28.7 0.96 8.9 4.7 3.3 1 1 2 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Baculo_PEP_C PF04513.7 gi|110668917|ref|YP_658728.1| - 0.56 10.0 9.1 13 5.6 0.1 3.3 1 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF3450 PF11932.3 gi|110668917|ref|YP_658728.1| - 0.72 9.0 26.2 2.1 7.5 7.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) DUF948 PF06103.6 gi|110668917|ref|YP_658728.1| - 0.9 9.4 14.7 11 5.9 1.8 4.2 2 1 1 4 4 4 0 Bacterial protein of unknown function (DUF948) Snapin_Pallidin PF14712.1 gi|110668917|ref|YP_658728.1| - 1.4 9.2 17.8 0.16 12.3 3.3 2.9 1 1 1 2 2 2 0 Snapin/Pallidin Dor1 PF04124.7 gi|110668917|ref|YP_658728.1| - 1.6 7.1 16.6 2.4 6.5 9.8 2.0 1 1 1 2 2 2 0 Dor1-like family ATG_C PF09333.6 gi|110668917|ref|YP_658728.1| - 2.7 8.2 8.9 2.6 8.2 0.2 3.1 1 1 2 3 3 3 0 ATG C terminal domain DUF342 PF03961.8 gi|110668917|ref|YP_658728.1| - 2.7 6.2 22.8 2.4 6.4 10.9 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF342) FlaC_arch PF05377.6 gi|110668917|ref|YP_658728.1| - 3.1 7.7 21.3 4.4 7.2 1.6 5.3 5 1 1 6 6 6 0 Flagella accessory protein C (FlaC) TPR_MLP1_2 PF07926.7 gi|110668917|ref|YP_658728.1| - 4.5 7.0 39.2 3.4 7.4 18.0 3.5 1 1 3 4 4 4 0 TPR/MLP1/MLP2-like protein YlqD PF11068.3 gi|110668917|ref|YP_658728.1| - 5.1 7.1 29.7 1.2 9.1 11.1 3.1 2 1 1 3 3 3 0 YlqD protein Bacillus_HBL PF05791.6 gi|110668917|ref|YP_658728.1| - 6.9 5.9 15.7 5.4 6.3 1.4 2.5 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) V_ATPase_I PF01496.14 gi|110668917|ref|YP_658728.1| - 7.4 4.2 24.7 14 3.3 15.5 2.2 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Abhydrolase_5 PF12695.2 gi|110668918|ref|YP_658729.1| - 4.8e-09 36.1 0.0 6.9e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|110668918|ref|YP_658729.1| - 5.8e-07 29.6 0.1 0.026 14.4 0.0 2.2 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|110668918|ref|YP_658729.1| - 1.2e-06 27.9 0.0 1.7e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family BAAT_C PF08840.6 gi|110668918|ref|YP_658729.1| - 0.0054 16.4 0.0 0.012 15.3 0.0 1.4 1 1 1 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal Thioesterase PF00975.15 gi|110668918|ref|YP_658729.1| - 0.015 15.5 0.2 0.12 12.5 0.1 2.0 2 0 0 2 2 2 0 Thioesterase domain Abhydrolase_2 PF02230.11 gi|110668918|ref|YP_658729.1| - 0.021 14.2 0.0 0.036 13.4 0.0 1.4 1 0 0 1 1 1 0 Phospholipase/Carboxylesterase Peptidase_S15 PF02129.13 gi|110668918|ref|YP_658729.1| - 0.032 13.6 0.1 0.047 13.1 0.0 1.2 1 0 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) FSH1 PF03959.8 gi|110668918|ref|YP_658729.1| - 0.037 13.4 0.2 0.23 10.8 0.1 1.9 1 1 0 1 1 1 0 Serine hydrolase (FSH1) DUF3209 PF11483.3 gi|110668919|ref|YP_658730.1| - 9.6e-63 209.9 4.1 1.1e-62 209.8 2.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3209) HWE_HK PF07536.9 gi|110668919|ref|YP_658730.1| - 0.012 16.0 0.7 0.45 10.9 0.1 2.5 1 1 1 2 2 2 0 HWE histidine kinase Syntaxin-6_N PF09177.6 gi|110668919|ref|YP_658730.1| - 0.12 12.8 0.1 0.19 12.1 0.1 1.5 1 1 0 1 1 1 0 Syntaxin 6, N-terminal CbiX PF01903.12 gi|110668920|ref|YP_658731.1| - 1e-42 144.5 0.0 1e-21 77.0 0.1 2.4 2 0 0 2 2 2 2 CbiX 2Fe-2S_thioredx PF01257.14 gi|110668920|ref|YP_658731.1| - 1e-08 34.8 0.2 1.9e-08 34.0 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin CbiK PF06180.6 gi|110668920|ref|YP_658731.1| - 5.5e-05 22.3 0.0 0.23 10.5 0.0 2.1 1 1 1 2 2 2 2 Cobalt chelatase (CbiK) Suc_Fer-like PF06999.7 gi|110668920|ref|YP_658731.1| - 0.051 13.5 0.0 0.21 11.5 0.0 2.0 2 0 0 2 2 2 0 Sucrase/ferredoxin-like DUF1636 PF07845.6 gi|110668920|ref|YP_658731.1| - 0.081 13.1 0.6 0.37 11.0 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1636) LAGLIDADG_3 PF14528.1 gi|110668921|ref|YP_658732.1| - 0.04 14.1 0.0 1.2 9.4 0.0 2.7 3 0 0 3 3 3 0 LAGLIDADG-like domain TP_methylase PF00590.15 gi|110668922|ref|YP_658733.1| - 2.7e-36 125.2 0.3 3.4e-36 124.9 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF236 PF03057.9 gi|110668922|ref|YP_658733.1| - 0.097 12.6 0.0 0.097 12.6 0.0 2.0 2 1 0 2 2 2 0 Protein of unknown function MSP1_C PF07462.6 gi|110668922|ref|YP_658733.1| - 9.5 4.4 7.7 16 3.7 5.3 1.3 1 0 0 1 1 1 0 Merozoite surface protein 1 (MSP1) C-terminus TP_methylase PF00590.15 gi|110668923|ref|YP_658734.1| - 1.8e-41 142.1 0.1 2.4e-41 141.7 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.3 gi|110668924|ref|YP_658735.1| - 2.3e-21 75.2 0.1 3.7e-20 71.4 0.0 2.7 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal GMP_synt_C PF00958.17 gi|110668924|ref|YP_658735.1| - 0.6 9.8 0.0 0.6 9.8 0.0 2.8 4 0 0 4 4 4 0 GMP synthase C terminal domain Asparaginase_2 PF01112.13 gi|110668925|ref|YP_658736.1| - 3.8e-39 134.2 11.2 8.2e-39 133.1 7.8 1.5 1 1 0 1 1 1 1 Asparaginase Usp PF00582.21 gi|110668928|ref|YP_658739.1| - 8e-16 58.4 0.0 1.2e-15 57.9 0.0 1.2 1 0 0 1 1 1 1 Universal stress protein family UPF0118 PF01594.11 gi|110668929|ref|YP_658740.1| - 7.4e-24 84.3 29.8 9.5e-24 83.9 20.7 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF20 RNA_pol_Rpb2_4 PF04566.8 gi|110668930|ref|YP_658741.1| - 0.15 11.8 0.2 0.32 10.8 0.1 1.6 1 1 0 1 1 1 0 RNA polymerase Rpb2, domain 4 MobB PF03205.9 gi|110668931|ref|YP_658742.1| - 4.7e-20 71.7 0.0 5.9e-20 71.4 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|110668931|ref|YP_658742.1| - 0.00067 19.7 0.0 0.0013 18.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|110668931|ref|YP_658742.1| - 0.0016 19.2 0.0 0.0053 17.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|110668931|ref|YP_658742.1| - 0.0057 16.5 0.0 0.0082 16.0 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FtsK_SpoIIIE PF01580.13 gi|110668931|ref|YP_658742.1| - 0.0061 16.0 0.0 0.06 12.8 0.0 2.1 2 0 0 2 2 2 1 FtsK/SpoIIIE family ABC_tran PF00005.22 gi|110668931|ref|YP_658742.1| - 0.01 16.1 0.0 0.012 15.9 0.0 1.2 1 0 0 1 1 1 0 ABC transporter AAA_33 PF13671.1 gi|110668931|ref|YP_658742.1| - 0.011 15.6 0.1 0.033 14.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|110668931|ref|YP_658742.1| - 0.011 15.7 0.0 0.016 15.1 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain PPV_E1_C PF00519.12 gi|110668931|ref|YP_658742.1| - 0.011 14.3 0.0 0.015 13.9 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus helicase ATP_bind_1 PF03029.12 gi|110668931|ref|YP_658742.1| - 0.014 14.9 0.1 0.021 14.3 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_14 PF13173.1 gi|110668931|ref|YP_658742.1| - 0.021 14.7 0.0 0.033 14.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|110668931|ref|YP_658742.1| - 0.021 14.5 0.0 0.03 14.0 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_21 PF13304.1 gi|110668931|ref|YP_658742.1| - 0.025 14.5 0.0 0.031 14.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain GTP_EFTU PF00009.22 gi|110668931|ref|YP_658742.1| - 0.026 13.9 0.1 0.046 13.1 0.0 1.4 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain Pox_A32 PF04665.7 gi|110668931|ref|YP_658742.1| - 0.038 13.2 0.0 0.18 11.0 0.0 1.8 2 0 0 2 2 2 0 Poxvirus A32 protein AAA_26 PF13500.1 gi|110668931|ref|YP_658742.1| - 0.038 13.5 0.0 0.052 13.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|110668931|ref|YP_658742.1| - 0.042 14.0 0.0 0.064 13.4 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_29 PF13555.1 gi|110668931|ref|YP_658742.1| - 0.048 13.2 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Dynamin_N PF00350.18 gi|110668931|ref|YP_658742.1| - 0.051 13.3 0.1 0.11 12.3 0.0 1.5 1 1 0 1 1 1 0 Dynamin family DUF463 PF04317.7 gi|110668931|ref|YP_658742.1| - 0.054 12.0 0.0 0.079 11.5 0.0 1.2 1 0 0 1 1 1 0 YcjX-like family, DUF463 SRPRB PF09439.5 gi|110668931|ref|YP_658742.1| - 0.058 12.6 0.0 0.1 11.8 0.0 1.4 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit T2SE PF00437.15 gi|110668931|ref|YP_658742.1| - 0.068 12.0 0.0 0.1 11.5 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Miro PF08477.8 gi|110668931|ref|YP_658742.1| - 0.08 13.4 0.0 0.12 12.9 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein NACHT PF05729.7 gi|110668931|ref|YP_658742.1| - 0.081 12.5 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_23 PF13476.1 gi|110668931|ref|YP_658742.1| - 0.083 13.2 0.0 0.1 12.9 0.0 1.3 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|110668931|ref|YP_658742.1| - 0.098 12.0 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain MarR_2 PF12802.2 gi|110668932|ref|YP_658743.1| - 0.003 17.1 0.1 0.0089 15.6 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|110668932|ref|YP_658743.1| - 0.023 14.2 0.2 0.096 12.2 0.0 2.1 2 0 0 2 2 2 0 IclR helix-turn-helix domain HemN_C PF06969.11 gi|110668932|ref|YP_658743.1| - 0.029 14.4 0.1 1.7 8.7 0.0 2.5 2 0 0 2 2 2 0 HemN C-terminal domain DUF1724 PF08350.5 gi|110668932|ref|YP_658743.1| - 0.11 12.0 0.0 0.23 11.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1724) HTH_24 PF13412.1 gi|110668932|ref|YP_658743.1| - 0.12 11.7 0.0 0.32 10.3 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding EamA PF00892.15 gi|110668933|ref|YP_658744.1| - 8.6e-36 122.7 34.3 3.1e-19 69.2 5.1 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|110668933|ref|YP_658744.1| - 2.8e-07 30.7 5.7 2.8e-07 30.7 4.0 3.8 1 1 3 4 4 4 3 Multidrug resistance efflux transporter TPT PF03151.11 gi|110668933|ref|YP_658744.1| - 0.081 12.5 21.2 0.18 11.4 1.5 2.7 2 1 0 2 2 2 0 Triose-phosphate Transporter family Gate PF07670.9 gi|110668934|ref|YP_658745.1| - 1e-08 35.0 17.3 1.6e-05 24.7 2.1 2.7 2 1 0 2 2 2 2 Nucleoside recognition RNA_binding PF01877.12 gi|110668935|ref|YP_658746.1| - 7e-26 90.5 0.6 9.8e-26 90.1 0.4 1.2 1 0 0 1 1 1 1 RNA binding Auxin_BP PF02041.11 gi|110668935|ref|YP_658746.1| - 0.045 13.1 0.1 0.053 12.9 0.1 1.2 1 0 0 1 1 1 0 Auxin binding protein AAA_18 PF13238.1 gi|110668936|ref|YP_658747.1| - 2.9e-11 43.7 0.1 4.4e-11 43.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|110668936|ref|YP_658747.1| - 4e-10 40.5 0.2 6e-10 39.9 0.1 1.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|110668936|ref|YP_658747.1| - 1.1e-07 31.8 0.0 1.7e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain SKI PF01202.17 gi|110668936|ref|YP_658747.1| - 0.0025 17.6 0.1 0.013 15.3 0.0 1.9 1 1 0 1 1 1 1 Shikimate kinase CoaE PF01121.15 gi|110668936|ref|YP_658747.1| - 0.0029 17.0 0.2 1.5 8.2 0.0 2.2 2 0 0 2 2 2 2 Dephospho-CoA kinase Cytidylate_kin2 PF13189.1 gi|110668936|ref|YP_658747.1| - 0.0037 17.1 0.2 0.26 11.1 0.1 2.2 1 1 0 1 1 1 1 Cytidylate kinase-like family ADK PF00406.17 gi|110668936|ref|YP_658747.1| - 0.047 13.5 0.1 0.097 12.5 0.1 1.8 1 1 0 1 1 1 0 Adenylate kinase PEP-utilizers PF00391.18 gi|110668936|ref|YP_658747.1| - 0.11 12.0 0.2 0.2 11.2 0.1 1.6 1 1 0 1 1 1 0 PEP-utilising enzyme, mobile domain Cpn60_TCP1 PF00118.19 gi|110668937|ref|YP_658748.1| - 2.4e-166 554.1 4.4 2.7e-166 553.9 3.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DICT PF10069.4 gi|110668938|ref|YP_658749.1| - 2.6e-20 72.2 0.0 4.2e-20 71.5 0.0 1.3 1 0 0 1 1 1 1 Sensory domain found in DIguanylate Cyclases & Two-component systems KH_1 PF00013.24 gi|110668939|ref|YP_658750.1| - 1.2e-16 60.1 4.6 8.7e-09 34.9 0.2 2.2 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|110668939|ref|YP_658750.1| - 1.3e-08 34.2 1.2 0.00016 21.2 0.1 2.5 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|110668939|ref|YP_658750.1| - 1e-05 25.0 2.3 0.0023 17.4 0.0 2.4 2 1 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|110668939|ref|YP_658750.1| - 0.0053 16.3 0.7 2.7 7.6 0.3 2.8 2 1 0 2 2 2 2 KH domain CRCB PF02537.10 gi|110668940|ref|YP_658751.1| - 4e-23 81.5 6.0 6e-23 80.9 4.2 1.3 1 0 0 1 1 1 1 CrcB-like protein Dimeth_Pyl PF09505.5 gi|110668940|ref|YP_658751.1| - 0.23 9.6 2.3 0.25 9.5 1.6 1.2 1 0 0 1 1 1 0 Dimethylamine methyltransferase (Dimeth_PyL) DUF389 PF04087.9 gi|110668940|ref|YP_658751.1| - 2.4 8.0 9.4 3.3 7.6 0.5 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF389) CRCB PF02537.10 gi|110668941|ref|YP_658752.1| - 8.4e-18 64.3 19.0 9.9e-18 64.1 13.2 1.0 1 0 0 1 1 1 1 CrcB-like protein AAA_10 PF12846.2 gi|110668942|ref|YP_658753.1| - 2e-17 63.6 0.1 3.6e-11 43.0 0.0 2.1 1 1 0 2 2 2 2 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|110668942|ref|YP_658753.1| - 1.1e-07 31.5 0.0 5.3e-05 22.7 0.0 2.3 2 0 0 2 2 2 2 FtsK/SpoIIIE family DUF87 PF01935.12 gi|110668942|ref|YP_658753.1| - 1.1e-06 28.6 0.0 2.5e-06 27.4 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|110668942|ref|YP_658753.1| - 1.2e-05 23.8 0.1 0.00018 19.9 0.0 2.1 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.4 gi|110668942|ref|YP_658753.1| - 0.00017 20.3 0.0 0.28 9.7 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain Zot PF05707.7 gi|110668942|ref|YP_658753.1| - 0.042 13.3 0.1 0.17 11.2 0.0 1.9 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Helicase_RecD PF05127.9 gi|110668942|ref|YP_658753.1| - 0.057 13.0 0.0 0.25 10.9 0.0 2.0 2 0 0 2 2 2 0 Helicase AAA_16 PF13191.1 gi|110668942|ref|YP_658753.1| - 0.068 13.1 0.2 0.36 10.7 0.0 2.1 2 1 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|110668942|ref|YP_658753.1| - 0.092 12.8 0.0 8.1 6.5 0.0 2.5 2 1 0 2 2 2 0 AAA domain CTP_synth_N PF06418.9 gi|110668942|ref|YP_658753.1| - 0.1 11.6 0.0 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 CTP synthase N-terminus CarboxypepD_reg PF13620.1 gi|110668943|ref|YP_658754.1| - 0.00016 21.6 0.2 0.00027 20.9 0.1 1.5 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.11 gi|110668943|ref|YP_658754.1| - 0.024 14.5 0.0 0.035 14.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) DUF2964 PF11177.3 gi|110668943|ref|YP_658754.1| - 0.031 14.1 0.1 0.06 13.2 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2964) DUF1743 PF08489.6 gi|110668944|ref|YP_658755.1| - 9.5e-35 118.9 0.0 1.6e-34 118.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.20 gi|110668944|ref|YP_658755.1| - 0.002 17.9 0.1 0.034 13.9 0.0 2.4 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.6 gi|110668944|ref|YP_658755.1| - 0.052 13.2 1.7 0.12 12.0 1.2 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2H2 PF00096.21 gi|110668944|ref|YP_658755.1| - 0.29 11.5 4.2 2 8.9 0.6 2.7 2 0 0 2 2 2 0 Zinc finger, C2H2 type HTH_3 PF01381.17 gi|110668945|ref|YP_658756.1| - 1.5e-10 40.7 0.0 2.8e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|110668945|ref|YP_658756.1| - 1.1e-06 28.7 0.2 2.7e-06 27.4 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|110668945|ref|YP_658756.1| - 1.2e-06 28.4 0.0 2.2e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|110668945|ref|YP_658756.1| - 0.00014 21.3 0.2 0.00045 19.7 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_11 PF08279.7 gi|110668945|ref|YP_658756.1| - 0.00049 19.6 0.0 0.0011 18.5 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_25 PF13413.1 gi|110668945|ref|YP_658756.1| - 0.00076 19.0 0.1 0.0014 18.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|110668945|ref|YP_658756.1| - 0.012 15.5 0.0 0.028 14.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|110668945|ref|YP_658756.1| - 0.072 12.4 0.1 0.14 11.5 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_20 PF12840.2 gi|110668945|ref|YP_658756.1| - 0.1 12.4 0.0 3.7 7.4 0.0 3.2 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_37 PF13744.1 gi|110668945|ref|YP_658756.1| - 0.11 12.3 0.0 1.7 8.5 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|110668945|ref|YP_658756.1| - 0.11 12.0 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_8 PF02954.14 gi|110668945|ref|YP_658756.1| - 0.12 11.9 0.1 0.26 10.8 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family Glutaredoxin PF00462.19 gi|110668946|ref|YP_658757.1| - 3.8e-12 46.0 0.0 5.2e-12 45.5 0.0 1.3 1 1 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.1 gi|110668946|ref|YP_658757.1| - 3.7e-11 43.0 0.0 4.1e-11 42.9 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|110668946|ref|YP_658757.1| - 5.1e-08 32.8 0.0 5.9e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|110668946|ref|YP_658757.1| - 0.0036 17.5 0.1 0.005 17.0 0.1 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_3 PF13192.1 gi|110668946|ref|YP_658757.1| - 0.063 13.1 0.1 0.12 12.1 0.1 1.5 1 1 0 1 1 1 0 Thioredoxin domain PQQ_2 PF13360.1 gi|110668947|ref|YP_658758.1| - 2.9e-32 112.0 8.4 4.8e-17 62.2 0.1 3.1 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|110668947|ref|YP_658758.1| - 2.8e-12 46.4 23.2 0.0073 16.5 0.2 7.7 8 0 0 8 8 8 4 PQQ-like domain PQQ PF01011.16 gi|110668947|ref|YP_658758.1| - 2.2e-10 39.5 1.3 0.29 10.7 0.1 5.8 5 1 0 5 5 5 5 PQQ enzyme repeat TRAM PF01938.15 gi|110668948|ref|YP_658759.1| - 1.1e-10 41.0 1.5 2e-10 40.2 1.0 1.4 1 0 0 1 1 1 1 TRAM domain Macoilin PF09726.4 gi|110668948|ref|YP_658759.1| - 0.85 7.8 3.9 0.91 7.7 2.7 1.0 1 0 0 1 1 1 0 Transmembrane protein OrfB_IS605 PF01385.14 gi|110668949|ref|YP_658760.1| - 4.9e-45 153.6 0.0 6.4e-45 153.3 0.0 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|110668949|ref|YP_658760.1| - 2e-20 72.2 1.9 2.9e-20 71.6 0.7 1.8 2 0 0 2 2 2 1 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.5 gi|110668949|ref|YP_658760.1| - 0.036 13.5 2.3 0.084 12.3 1.6 1.7 1 0 0 1 1 1 0 A2L zinc ribbon domain RRN7 PF11781.3 gi|110668949|ref|YP_658760.1| - 0.036 13.5 2.0 0.082 12.4 1.4 1.7 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 Prim_Zn_Ribbon PF08273.7 gi|110668949|ref|YP_658760.1| - 0.04 14.0 0.7 0.095 12.7 0.5 1.6 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase Zn_Tnp_IS1595 PF12760.2 gi|110668949|ref|YP_658760.1| - 0.092 12.5 1.5 0.28 11.0 1.0 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF4298 PF14131.1 gi|110668949|ref|YP_658760.1| - 0.096 12.5 0.1 0.28 11.0 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4298) zf-FPG_IleRS PF06827.9 gi|110668949|ref|YP_658760.1| - 0.11 12.1 1.8 0.28 10.8 1.2 1.7 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS C1_3 PF07649.7 gi|110668949|ref|YP_658760.1| - 0.11 12.5 2.8 0.11 12.5 0.6 2.1 2 0 0 2 2 2 0 C1-like domain HTH_24 PF13412.1 gi|110668950|ref|YP_658761.1| - 2.1e-15 55.7 0.1 3.3e-15 55.2 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|110668950|ref|YP_658761.1| - 5.4e-12 45.0 0.2 5.4e-12 45.0 0.1 1.7 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|110668950|ref|YP_658761.1| - 6.8e-07 28.8 0.0 1.3e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|110668950|ref|YP_658761.1| - 1e-06 28.2 0.0 1.9e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|110668950|ref|YP_658761.1| - 1.7e-06 27.7 0.0 3e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|110668950|ref|YP_658761.1| - 3.7e-05 23.2 0.0 6.8e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|110668950|ref|YP_658761.1| - 4e-05 23.2 0.0 7e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|110668950|ref|YP_658761.1| - 5.3e-05 22.7 0.0 9.2e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|110668950|ref|YP_658761.1| - 0.00022 21.1 0.0 0.00047 20.0 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.1 gi|110668950|ref|YP_658761.1| - 0.00033 20.5 0.1 0.00061 19.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|110668950|ref|YP_658761.1| - 0.0005 19.5 0.0 0.00085 18.8 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_38 PF13936.1 gi|110668950|ref|YP_658761.1| - 0.00081 18.8 0.0 0.0014 18.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|110668950|ref|YP_658761.1| - 0.0011 19.1 0.0 0.0023 18.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|110668950|ref|YP_658761.1| - 0.0015 18.0 0.0 0.004 16.7 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|110668950|ref|YP_658761.1| - 0.002 17.5 0.0 0.0034 16.8 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 LexA_DNA_bind PF01726.11 gi|110668950|ref|YP_658761.1| - 0.0029 17.1 0.0 0.0057 16.1 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain Rrf2 PF02082.15 gi|110668950|ref|YP_658761.1| - 0.0051 16.9 0.0 0.009 16.1 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator GerE PF00196.14 gi|110668950|ref|YP_658761.1| - 0.0075 15.5 0.0 0.017 14.4 0.0 1.5 2 0 0 2 2 1 1 Bacterial regulatory proteins, luxR family FaeA PF04703.7 gi|110668950|ref|YP_658761.1| - 0.0083 16.2 0.0 0.014 15.5 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein Sigma70_r4 PF04545.11 gi|110668950|ref|YP_658761.1| - 0.011 15.0 0.0 0.017 14.4 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 RPA_C PF08784.6 gi|110668950|ref|YP_658761.1| - 0.012 16.0 0.0 0.035 14.5 0.0 1.7 2 0 0 2 2 2 0 Replication protein A C terminal MarR PF01047.17 gi|110668950|ref|YP_658761.1| - 0.014 15.0 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_3 PF01381.17 gi|110668950|ref|YP_658761.1| - 0.018 14.9 0.0 0.12 12.1 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix HrcA_DNA-bdg PF03444.10 gi|110668950|ref|YP_658761.1| - 0.02 14.3 0.0 0.034 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding EAP30 PF04157.11 gi|110668950|ref|YP_658761.1| - 0.021 13.9 0.0 0.037 13.1 0.0 1.4 1 0 0 1 1 1 0 EAP30/Vps36 family GntR PF00392.16 gi|110668950|ref|YP_658761.1| - 0.029 13.8 0.0 0.052 12.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Put_DNA-bind_N PF06971.8 gi|110668950|ref|YP_658761.1| - 0.029 14.1 0.0 0.062 13.0 0.0 1.6 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus TrmB PF01978.14 gi|110668950|ref|YP_658761.1| - 0.031 13.9 0.0 0.055 13.1 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.1 gi|110668950|ref|YP_658761.1| - 0.038 14.1 0.0 0.076 13.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Tnp_ISL3 PF13542.1 gi|110668950|ref|YP_658761.1| - 0.047 12.8 0.0 0.081 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_Crp_2 PF13545.1 gi|110668950|ref|YP_658761.1| - 0.051 13.3 0.0 0.098 12.4 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_12 PF08461.5 gi|110668950|ref|YP_658761.1| - 0.058 13.1 0.4 0.16 11.7 0.0 1.9 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain Bac_rhodopsin PF01036.13 gi|110668951|ref|YP_658762.1| - 4.6e-52 176.5 21.7 5.4e-52 176.3 15.0 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein DEAD PF00270.24 gi|110668952|ref|YP_658763.1| - 1.1e-23 83.6 0.0 3e-23 82.1 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|110668952|ref|YP_658763.1| - 1.5e-12 47.2 0.0 2.8e-12 46.3 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|110668952|ref|YP_658763.1| - 5e-07 29.7 0.0 1.2e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|110668952|ref|YP_658763.1| - 0.21 10.3 0.0 0.27 10.0 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain CBS PF00571.23 gi|110668953|ref|YP_658764.1| - 2e-27 94.6 4.4 3.3e-17 61.9 0.1 2.5 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|110668953|ref|YP_658764.1| - 6e-20 71.0 13.1 6.5e-15 54.5 3.2 2.7 1 1 2 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|110668953|ref|YP_658764.1| - 0.00012 21.5 3.7 0.00012 21.5 2.6 2.5 1 1 2 3 3 3 1 Peptidase M50B-like Peptidase_MA_2 PF13485.1 gi|110668953|ref|YP_658764.1| - 0.051 13.6 0.0 0.094 12.7 0.0 1.4 1 0 0 1 1 1 0 Peptidase MA superfamily HAD_2 PF13419.1 gi|110668954|ref|YP_658765.1| - 8.6e-22 78.1 0.0 9.9e-22 77.9 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|110668954|ref|YP_658765.1| - 1.4e-12 48.4 1.5 8.2e-12 45.9 1.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|110668954|ref|YP_658765.1| - 2.5e-08 33.4 0.2 5.8e-08 32.3 0.2 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like NurA PF09376.5 gi|110668955|ref|YP_658766.1| - 2.1e-21 76.5 0.0 2.8e-21 76.1 0.0 1.1 1 0 0 1 1 1 1 NurA domain AMP-binding_C PF13193.1 gi|110668956|ref|YP_658767.1| - 0.081 13.8 0.0 0.11 13.4 0.0 1.2 1 0 0 1 1 1 0 AMP-binding enzyme C-terminal domain AAA_10 PF12846.2 gi|110668957|ref|YP_658768.1| - 5.5e-20 72.0 0.0 2.4e-19 69.9 0.0 2.0 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|110668957|ref|YP_658768.1| - 4.7e-11 42.9 0.0 2.2e-10 40.7 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|110668957|ref|YP_658768.1| - 6.3e-06 24.8 0.2 0.011 14.1 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|110668957|ref|YP_658768.1| - 1.4e-05 24.6 0.0 0.0063 16.0 0.0 2.5 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA_19 PF13245.1 gi|110668957|ref|YP_658768.1| - 0.0019 17.8 0.0 0.0058 16.3 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain TrwB_AAD_bind PF10412.4 gi|110668957|ref|YP_658768.1| - 0.0062 15.2 0.0 0.026 13.1 0.0 1.8 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|110668957|ref|YP_658768.1| - 0.016 15.3 0.0 0.094 12.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|110668957|ref|YP_658768.1| - 0.019 13.8 0.0 0.039 12.8 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_16 PF13191.1 gi|110668957|ref|YP_658768.1| - 0.024 14.6 0.0 0.26 11.2 0.0 2.4 1 1 0 1 1 1 0 AAA ATPase domain Zot PF05707.7 gi|110668957|ref|YP_658768.1| - 0.035 13.5 0.0 0.92 8.9 0.0 2.2 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) DEAD PF00270.24 gi|110668957|ref|YP_658768.1| - 0.06 12.8 0.0 0.52 9.7 0.0 2.2 1 1 1 2 2 2 0 DEAD/DEAH box helicase DUF552 PF04472.7 gi|110668958|ref|YP_658769.1| - 7.3e-17 61.0 1.9 9.6e-17 60.6 1.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF552) ABC_tran PF00005.22 gi|110668959|ref|YP_658770.1| - 5.3e-22 78.6 0.0 4.9e-12 46.3 0.0 4.2 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.14 gi|110668959|ref|YP_658770.1| - 1.7e-12 47.0 0.5 0.028 13.6 0.0 4.2 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|110668959|ref|YP_658770.1| - 4.5e-09 35.6 0.0 0.0012 18.3 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|110668959|ref|YP_658770.1| - 4.4e-08 33.4 6.3 0.074 12.9 0.0 4.4 4 0 0 4 4 4 3 AAA domain AAA_25 PF13481.1 gi|110668959|ref|YP_658770.1| - 1e-06 28.2 0.0 0.097 12.0 0.0 3.4 3 0 0 3 3 3 2 AAA domain AAA_22 PF13401.1 gi|110668959|ref|YP_658770.1| - 2.3e-06 27.7 0.3 0.24 11.5 0.0 3.7 4 0 0 4 4 3 2 AAA domain DnaJ_CXXCXGXG PF00684.14 gi|110668959|ref|YP_658770.1| - 6.3e-06 26.1 5.7 0.012 15.6 1.2 3.4 3 0 0 3 3 3 1 DnaJ central domain AAA_16 PF13191.1 gi|110668959|ref|YP_658770.1| - 1.7e-05 24.8 0.0 0.23 11.4 0.0 3.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|110668959|ref|YP_658770.1| - 2.1e-05 24.1 0.7 0.0099 15.3 0.0 2.7 2 1 0 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|110668959|ref|YP_658770.1| - 2.3e-05 23.6 0.0 0.15 11.2 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|110668959|ref|YP_658770.1| - 4.9e-05 24.1 1.2 0.64 10.8 0.0 4.0 4 0 0 4 4 3 2 AAA domain KaiC PF06745.8 gi|110668959|ref|YP_658770.1| - 7.3e-05 21.9 0.2 0.076 12.1 0.0 2.8 3 0 0 3 3 3 2 KaiC AAA_18 PF13238.1 gi|110668959|ref|YP_658770.1| - 0.00027 21.2 0.1 0.74 10.1 0.0 3.2 3 0 0 3 3 2 1 AAA domain AAA_14 PF13173.1 gi|110668959|ref|YP_658770.1| - 0.00032 20.5 0.0 0.39 10.6 0.0 3.2 3 0 0 3 3 3 1 AAA domain AAA_23 PF13476.1 gi|110668959|ref|YP_658770.1| - 0.00035 20.9 0.0 0.33 11.2 0.0 2.8 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|110668959|ref|YP_658770.1| - 0.0007 19.4 0.1 1.8 8.4 0.0 3.3 3 0 0 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|110668959|ref|YP_658770.1| - 0.0041 16.2 0.0 1.9 7.4 0.0 2.8 3 0 0 3 3 3 1 AAA ATPase domain APS_kinase PF01583.15 gi|110668959|ref|YP_658770.1| - 0.006 16.2 0.1 3.7 7.2 0.0 2.8 2 0 0 2 2 2 1 Adenylylsulphate kinase DUF2075 PF09848.4 gi|110668959|ref|YP_658770.1| - 0.0064 15.5 0.1 2.1 7.2 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.13 gi|110668959|ref|YP_658770.1| - 0.011 15.3 0.0 0.42 10.1 0.0 2.5 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase NACHT PF05729.7 gi|110668959|ref|YP_658770.1| - 0.011 15.4 0.0 0.41 10.2 0.0 2.3 2 0 0 2 2 2 0 NACHT domain Arch_ATPase PF01637.13 gi|110668959|ref|YP_658770.1| - 0.013 15.2 0.0 6.3 6.4 0.0 2.8 3 0 0 3 3 2 0 Archaeal ATPase MobB PF03205.9 gi|110668959|ref|YP_658770.1| - 0.017 14.8 0.1 0.78 9.4 0.0 2.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|110668959|ref|YP_658770.1| - 0.021 14.2 0.1 1.3 8.4 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.18 gi|110668959|ref|YP_658770.1| - 0.031 14.2 0.2 2.4 8.1 0.0 3.5 4 0 0 4 4 3 0 50S ribosome-binding GTPase DUF3006 PF11213.3 gi|110668959|ref|YP_658770.1| - 0.039 13.6 0.6 0.15 11.7 0.4 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3006) AAA_19 PF13245.1 gi|110668959|ref|YP_658770.1| - 0.041 13.6 0.1 12 5.7 0.0 2.7 2 0 0 2 2 2 0 Part of AAA domain Zn-ribbon_8 PF09723.5 gi|110668959|ref|YP_658770.1| - 0.051 13.5 5.5 6.2 6.8 0.1 3.4 3 0 0 3 3 3 0 Zinc ribbon domain FtsK_SpoIIIE PF01580.13 gi|110668959|ref|YP_658770.1| - 0.058 12.8 0.1 0.75 9.2 0.0 2.5 3 0 0 3 3 3 0 FtsK/SpoIIIE family RNA_helicase PF00910.17 gi|110668959|ref|YP_658770.1| - 0.11 12.7 0.0 3.6 7.8 0.0 2.4 2 0 0 2 2 2 0 RNA helicase Miro PF08477.8 gi|110668959|ref|YP_658770.1| - 0.16 12.4 0.6 27 5.2 0.0 3.1 3 0 0 3 3 2 0 Miro-like protein zf-RING_3 PF14369.1 gi|110668959|ref|YP_658770.1| - 0.17 11.9 0.4 12 5.9 0.0 2.7 2 0 0 2 2 2 0 zinc-finger GTP_EFTU PF00009.22 gi|110668961|ref|YP_658772.1| - 1.3e-30 106.1 0.0 6.6e-30 103.9 0.0 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|110668961|ref|YP_658772.1| - 8.8e-23 80.2 1.3 2.3e-22 78.9 0.9 1.7 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|110668961|ref|YP_658772.1| - 6.4e-13 48.6 5.6 3.7e-10 39.7 0.0 3.2 3 0 0 3 3 3 2 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|110668961|ref|YP_658772.1| - 7.9e-11 41.4 0.1 2.6e-10 39.7 0.0 2.0 2 0 0 2 2 2 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|110668961|ref|YP_658772.1| - 6.6e-06 26.0 0.0 1.8e-05 24.6 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|110668961|ref|YP_658772.1| - 0.0034 16.9 0.0 0.01 15.4 0.0 1.9 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.18 gi|110668961|ref|YP_658772.1| - 0.0097 15.7 0.1 0.68 9.7 0.0 2.4 1 1 0 2 2 2 1 Dynamin family Miro PF08477.8 gi|110668961|ref|YP_658772.1| - 0.045 14.2 0.0 0.1 13.1 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein MobB PF03205.9 gi|110668961|ref|YP_658772.1| - 0.068 12.8 0.3 0.21 11.2 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B PRC PF05239.11 gi|110668962|ref|YP_658773.1| - 2.9e-08 33.4 0.0 3.9e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 PRC-barrel domain MraZ PF02381.13 gi|110668962|ref|YP_658773.1| - 0.085 12.6 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 MraZ protein NOB1_Zn_bind PF08772.6 gi|110668963|ref|YP_658774.1| - 0.00017 21.3 0.5 0.0003 20.5 0.4 1.4 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like UPF0278 PF08745.6 gi|110668963|ref|YP_658774.1| - 0.00088 18.5 0.2 0.0011 18.2 0.1 1.3 1 0 0 1 1 1 1 UPF0278 family zf-C3HC4_3 PF13920.1 gi|110668963|ref|YP_658774.1| - 0.0057 16.3 0.7 0.0079 15.8 0.5 1.2 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) Zn-ribbon_8 PF09723.5 gi|110668963|ref|YP_658774.1| - 0.0074 16.2 5.6 0.15 12.0 3.9 2.2 1 1 0 1 1 1 1 Zinc ribbon domain Mut7-C PF01927.11 gi|110668963|ref|YP_658774.1| - 0.0077 16.2 0.1 0.0098 15.8 0.1 1.2 1 0 0 1 1 1 1 Mut7-C RNAse domain Rad50_zn_hook PF04423.9 gi|110668963|ref|YP_658774.1| - 0.0085 15.5 4.0 0.25 10.8 0.3 2.5 1 1 1 2 2 2 2 Rad50 zinc hook motif DZR PF12773.2 gi|110668963|ref|YP_658774.1| - 0.0087 15.8 1.1 0.014 15.1 0.8 1.3 1 0 0 1 1 1 1 Double zinc ribbon DUF4411 PF14367.1 gi|110668963|ref|YP_658774.1| - 0.016 14.8 0.5 0.21 11.2 0.2 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4411) DNA_ligase_ZBD PF03119.11 gi|110668963|ref|YP_658774.1| - 0.023 14.3 0.3 0.023 14.3 0.2 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain SprT-like PF10263.4 gi|110668963|ref|YP_658774.1| - 0.03 13.9 0.0 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 SprT-like family PIN PF01850.16 gi|110668963|ref|YP_658774.1| - 0.03 14.6 2.0 0.11 12.8 0.6 2.0 1 1 1 2 2 2 0 PIN domain zinc-ribbons_6 PF07191.7 gi|110668963|ref|YP_658774.1| - 0.065 13.0 0.4 0.12 12.2 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbons zf-C2H2 PF00096.21 gi|110668963|ref|YP_658774.1| - 0.087 13.2 1.5 1.7 9.1 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-ribbon_3 PF13248.1 gi|110668963|ref|YP_658774.1| - 0.14 11.4 1.7 0.24 10.6 1.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zf-C2HC_2 PF13913.1 gi|110668963|ref|YP_658774.1| - 0.21 11.2 8.8 0.16 11.6 0.8 2.3 1 1 1 2 2 2 0 zinc-finger of a C2HC-type HypA PF01155.14 gi|110668963|ref|YP_658774.1| - 0.25 11.0 2.9 0.41 10.3 1.9 1.7 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C2H2_4 PF13894.1 gi|110668963|ref|YP_658774.1| - 0.3 11.5 2.0 18 5.9 0.1 2.4 1 1 1 2 2 2 0 C2H2-type zinc finger DNA_RNApol_7kD PF03604.8 gi|110668963|ref|YP_658774.1| - 0.72 9.3 3.8 1.6 8.3 2.6 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|110668963|ref|YP_658774.1| - 1.7 8.2 6.1 0.92 9.0 2.4 1.9 2 1 0 2 2 2 0 zinc-ribbon domain OrfB_IS605 PF01385.14 gi|110668964|ref|YP_658775.1| - 2e-53 181.1 0.0 2.6e-53 180.7 0.0 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|110668964|ref|YP_658775.1| - 1.4e-19 69.4 2.1 3.5e-19 68.2 1.5 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Abi PF02517.11 gi|110668965|ref|YP_658776.1| - 2.1e-16 59.8 5.0 2.1e-16 59.8 3.4 2.5 2 1 0 2 2 2 2 CAAX protease self-immunity AzlD PF05437.7 gi|110668966|ref|YP_658777.1| - 2.9e-23 81.6 7.9 3.3e-23 81.4 5.5 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) DUF2516 PF10724.4 gi|110668966|ref|YP_658777.1| - 0.26 11.2 0.3 0.26 11.2 0.2 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF2516) AzlC PF03591.9 gi|110668967|ref|YP_658778.1| - 3.1e-42 143.9 5.6 3.1e-42 143.9 3.9 1.9 2 0 0 2 2 2 1 AzlC protein FixQ PF05545.6 gi|110668968|ref|YP_658779.1| - 0.031 13.9 0.8 0.046 13.3 0.6 1.3 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ UPF0552 PF10574.4 gi|110668968|ref|YP_658779.1| - 1.3 8.4 5.6 1.5 8.2 3.9 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0552 Abi PF02517.11 gi|110668969|ref|YP_658780.1| - 1.5e-15 57.1 2.9 1.5e-15 57.1 2.0 2.7 2 1 0 2 2 2 1 CAAX protease self-immunity NUDIX PF00293.23 gi|110668970|ref|YP_658781.1| - 2.3e-13 49.9 0.1 3.2e-13 49.4 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain Spore_YpjB PF09577.5 gi|110668970|ref|YP_658781.1| - 0.013 15.0 0.1 0.019 14.5 0.1 1.1 1 0 0 1 1 1 0 Sporulation protein YpjB (SpoYpjB) Arylsulfotran_2 PF14269.1 gi|110668971|ref|YP_658782.1| - 0.00035 19.8 1.2 0.014 14.6 0.7 2.5 1 1 0 1 1 1 1 Arylsulfotransferase (ASST) Arylsulfotrans PF05935.6 gi|110668971|ref|YP_658782.1| - 0.00058 18.4 2.9 0.0014 17.2 0.3 2.2 1 1 0 2 2 2 1 Arylsulfotransferase (ASST) NHL PF01436.16 gi|110668971|ref|YP_658782.1| - 0.3 11.1 6.8 0.41 10.6 0.1 4.2 4 0 0 4 4 4 0 NHL repeat PQQ_3 PF13570.1 gi|110668971|ref|YP_658782.1| - 0.58 10.5 3.5 2.9 8.2 0.6 3.3 3 0 0 3 3 3 0 PQQ-like domain Glyoxalase_2 PF12681.2 gi|110668972|ref|YP_658783.1| - 2.3e-06 28.1 0.0 2.9e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|110668972|ref|YP_658783.1| - 0.002 18.1 0.2 0.0047 16.9 0.1 1.6 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DUF457 PF04307.9 gi|110668973|ref|YP_658784.1| - 4.6e-12 45.5 27.8 8.4e-11 41.4 17.2 2.6 2 1 0 2 2 2 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) zf-CHY PF05495.7 gi|110668974|ref|YP_658785.1| - 3.9e-12 46.1 1.8 3e-05 24.0 0.3 2.4 1 1 1 2 2 2 2 CHY zinc finger zf-RING_3 PF14369.1 gi|110668974|ref|YP_658785.1| - 0.0023 17.8 4.7 0.047 13.6 0.1 3.1 2 2 0 2 2 2 2 zinc-finger Alpha_GJ PF03229.8 gi|110668974|ref|YP_658785.1| - 0.073 13.4 0.1 0.15 12.4 0.1 1.5 1 0 0 1 1 1 0 Alphavirus glycoprotein J DZR PF12773.2 gi|110668974|ref|YP_658785.1| - 2.6 7.9 8.2 1.9 8.3 3.1 2.7 2 1 0 2 2 2 0 Double zinc ribbon Methyltrn_RNA_2 PF04013.7 gi|110668975|ref|YP_658786.1| - 1.3e-51 174.9 0.0 1.5e-51 174.7 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase ABC_transp_aux PF09822.4 gi|110668976|ref|YP_658787.1| - 6.3e-07 29.1 0.0 8.6e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system Peptidase_S49 PF01343.13 gi|110668977|ref|YP_658788.1| - 5e-17 62.1 3.8 1.4e-07 31.4 0.0 2.3 2 0 0 2 2 2 2 Peptidase family S49 CLP_protease PF00574.18 gi|110668977|ref|YP_658788.1| - 0.0084 15.7 0.2 1.4 8.5 0.1 2.2 2 0 0 2 2 2 2 Clp protease DUF3068 PF11271.3 gi|110668977|ref|YP_658788.1| - 0.039 13.0 0.2 0.066 12.2 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3068) ABC2_membrane PF01061.19 gi|110668978|ref|YP_658789.1| - 5.2e-27 94.3 20.6 6.3e-27 94.1 14.3 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|110668978|ref|YP_658789.1| - 1.4e-07 30.9 22.6 1.4e-07 30.9 15.7 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|110668978|ref|YP_658789.1| - 1.3 8.2 18.7 2.6 7.2 12.9 1.7 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|110668979|ref|YP_658790.1| - 2.7e-30 105.4 0.0 4e-30 104.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110668979|ref|YP_658790.1| - 1.5e-16 61.2 0.2 1.5e-10 41.5 0.0 2.3 1 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|110668979|ref|YP_658790.1| - 0.0029 17.0 0.0 0.0062 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA-like domain AAA_15 PF13175.1 gi|110668979|ref|YP_658790.1| - 0.0041 16.2 0.0 0.18 10.8 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|110668979|ref|YP_658790.1| - 0.0093 16.3 0.0 0.013 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|110668979|ref|YP_658790.1| - 0.013 14.7 0.0 0.27 10.4 0.0 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.1 gi|110668979|ref|YP_658790.1| - 0.028 14.0 0.0 0.074 12.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|110668979|ref|YP_658790.1| - 0.039 13.1 0.1 0.19 10.9 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|110668979|ref|YP_658790.1| - 0.042 13.3 0.3 0.085 12.4 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|110668979|ref|YP_658790.1| - 0.051 12.9 0.1 0.19 11.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF4162 PF13732.1 gi|110668979|ref|YP_658790.1| - 0.066 13.7 0.0 0.13 12.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_19 PF13245.1 gi|110668979|ref|YP_658790.1| - 0.084 12.6 0.1 0.25 11.1 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|110668979|ref|YP_658790.1| - 0.2 11.3 1.1 6.6 6.4 0.1 3.0 3 1 0 3 3 3 0 NTPase PEP_mutase PF13714.1 gi|110668980|ref|YP_658791.1| - 3.7e-45 153.9 0.1 4.6e-45 153.6 0.1 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.16 gi|110668980|ref|YP_658791.1| - 1.7e-38 132.1 1.9 4.6e-19 68.0 0.0 2.1 1 1 1 2 2 2 2 Isocitrate lyase family THUMP PF02926.12 gi|110668981|ref|YP_658792.1| - 0.00043 20.1 0.0 0.0009 19.1 0.0 1.4 1 0 0 1 1 1 1 THUMP domain DnaJ_CXXCXGXG PF00684.14 gi|110668981|ref|YP_658792.1| - 0.0016 18.4 1.1 0.0016 18.4 0.8 2.9 3 0 0 3 3 3 1 DnaJ central domain DUF1356 PF07092.7 gi|110668981|ref|YP_658792.1| - 0.22 10.6 0.5 0.45 9.6 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1356) RNase_HII PF01351.13 gi|110668982|ref|YP_658793.1| - 2.1e-34 118.9 0.0 4.6e-34 117.8 0.0 1.5 1 1 0 1 1 1 1 Ribonuclease HII SecD_SecF PF02355.11 gi|110668983|ref|YP_658794.1| - 8.9e-17 60.8 5.7 1.9e-16 59.8 4.0 1.5 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.10 gi|110668983|ref|YP_658794.1| - 0.00045 19.0 13.1 0.0014 17.3 9.1 1.8 1 0 0 1 1 1 1 MMPL family Sterol-sensing PF12349.3 gi|110668983|ref|YP_658794.1| - 0.004 16.6 3.1 0.0089 15.4 1.8 1.8 2 0 0 2 2 2 1 Sterol-sensing domain of SREBP cleavage-activation Sec_GG PF07549.9 gi|110668983|ref|YP_658794.1| - 0.011 14.9 0.0 0.16 11.2 0.0 2.9 2 0 0 2 2 2 0 SecD/SecF GG Motif SecD_SecF PF02355.11 gi|110668984|ref|YP_658795.1| - 1.2e-31 109.4 14.9 1.2e-31 109.4 10.3 1.6 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.9 gi|110668984|ref|YP_658795.1| - 0.00056 18.9 0.1 0.0017 17.4 0.1 1.9 1 0 0 1 1 1 1 SecD/SecF GG Motif Patched PF02460.13 gi|110668984|ref|YP_658795.1| - 0.079 10.8 13.0 0.12 10.2 9.0 1.2 1 0 0 1 1 1 0 Patched family Peptidase_M50 PF02163.17 gi|110668986|ref|YP_658797.1| - 0.0095 14.9 1.5 0.015 14.2 1.1 1.2 1 0 0 1 1 1 1 Peptidase family M50 MARVEL PF01284.18 gi|110668986|ref|YP_658797.1| - 0.098 12.4 12.0 0.15 11.8 0.7 2.4 1 1 1 2 2 2 0 Membrane-associating domain DUF2781 PF10914.3 gi|110668986|ref|YP_658797.1| - 0.23 11.2 3.3 0.25 11.0 1.3 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2781) DUF898 PF05987.8 gi|110668986|ref|YP_658797.1| - 1.2 7.9 11.1 4.2 6.1 7.5 1.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF898) Competence PF03772.11 gi|110668986|ref|YP_658797.1| - 2.4 7.1 16.0 0.31 10.0 7.7 1.7 2 0 0 2 2 2 0 Competence protein PGI PF00342.14 gi|110668987|ref|YP_658798.1| - 5.4e-50 170.2 0.0 7.5e-50 169.7 0.0 1.1 1 0 0 1 1 1 1 Phosphoglucose isomerase Na_H_Exchanger PF00999.16 gi|110668988|ref|YP_658799.1| - 3.1e-32 111.5 46.6 4e-32 111.1 32.3 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|110668988|ref|YP_658799.1| - 9.3e-29 99.7 0.5 2.5e-28 98.4 0.3 1.8 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|110668988|ref|YP_658799.1| - 1.9e-10 40.1 0.8 1.9e-10 40.1 0.6 2.6 3 0 0 3 3 3 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|110668988|ref|YP_658799.1| - 1.3e-06 28.6 0.1 4.1e-06 27.0 0.0 1.9 2 0 0 2 2 1 1 Putative NAD(P)-binding F420_oxidored PF03807.12 gi|110668988|ref|YP_658799.1| - 5.6e-05 23.4 2.2 0.13 12.6 0.1 3.8 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|110668988|ref|YP_658799.1| - 0.00017 21.8 1.5 0.0038 17.5 0.6 2.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|110668988|ref|YP_658799.1| - 0.0014 17.7 0.6 0.002 17.2 0.4 1.2 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|110668988|ref|YP_658799.1| - 0.0028 16.6 1.9 0.0052 15.7 1.3 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|110668988|ref|YP_658799.1| - 0.0057 16.3 0.5 0.0057 16.3 0.3 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|110668988|ref|YP_658799.1| - 0.0066 15.9 0.6 0.02 14.3 0.4 1.8 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|110668988|ref|YP_658799.1| - 0.0066 16.4 1.0 0.016 15.2 0.7 1.7 1 0 0 1 1 1 1 NADH(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|110668988|ref|YP_658799.1| - 0.0093 15.7 0.8 0.037 13.7 0.1 2.3 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Epimerase PF01370.16 gi|110668988|ref|YP_658799.1| - 0.048 13.0 0.5 0.076 12.4 0.3 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family UDPG_MGDP_dh_N PF03721.9 gi|110668988|ref|YP_658799.1| - 0.052 12.9 0.2 0.098 12.0 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.7 gi|110668988|ref|YP_658799.1| - 0.063 12.1 0.1 0.091 11.6 0.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein 2-Hacid_dh_C PF02826.14 gi|110668988|ref|YP_658799.1| - 0.15 11.2 2.6 0.14 11.3 0.1 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.9 gi|110668988|ref|YP_658799.1| - 0.21 11.4 4.4 0.12 12.2 0.3 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AAA PF00004.24 gi|110668990|ref|YP_658801.1| - 2.9e-40 137.4 0.0 1.3e-39 135.3 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|110668990|ref|YP_658801.1| - 1.7e-09 38.5 5.0 3e-09 37.7 0.2 3.2 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|110668990|ref|YP_658801.1| - 1e-06 28.5 0.1 6.3e-06 25.9 0.0 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|110668990|ref|YP_658801.1| - 2.8e-06 27.6 0.8 1.9e-05 24.9 0.0 2.7 3 0 0 3 3 3 1 AAA domain AAA_33 PF13671.1 gi|110668990|ref|YP_658801.1| - 4.2e-06 26.6 1.0 1.1e-05 25.3 0.0 2.3 3 1 0 3 3 2 1 AAA domain AAA_16 PF13191.1 gi|110668990|ref|YP_658801.1| - 8.7e-06 25.8 4.5 0.0025 17.8 0.0 3.8 1 1 2 4 4 4 1 AAA ATPase domain AAA_28 PF13521.1 gi|110668990|ref|YP_658801.1| - 9.6e-06 25.6 1.0 3.5e-05 23.8 0.0 2.6 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|110668990|ref|YP_658801.1| - 1.6e-05 25.0 0.4 0.0026 17.9 0.4 3.1 2 1 0 2 2 1 1 AAA domain RuvB_N PF05496.7 gi|110668990|ref|YP_658801.1| - 6.3e-05 22.1 0.0 0.00013 21.0 0.0 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|110668990|ref|YP_658801.1| - 0.00013 21.6 0.3 0.0085 15.8 0.0 2.6 2 0 0 2 2 2 1 Part of AAA domain AAA_2 PF07724.9 gi|110668990|ref|YP_658801.1| - 0.00019 21.3 0.0 0.00047 20.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) T2SE PF00437.15 gi|110668990|ref|YP_658801.1| - 0.00029 19.8 0.0 0.00086 18.2 0.0 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein MMR_HSR1 PF01926.18 gi|110668990|ref|YP_658801.1| - 0.0014 18.5 0.0 0.0031 17.4 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase SKI PF01202.17 gi|110668990|ref|YP_658801.1| - 0.0017 18.2 0.0 0.005 16.7 0.0 1.8 1 0 0 1 1 1 1 Shikimate kinase TIP49 PF06068.8 gi|110668990|ref|YP_658801.1| - 0.0019 17.0 0.0 0.004 15.9 0.0 1.6 1 0 0 1 1 1 1 TIP49 C-terminus AAA_25 PF13481.1 gi|110668990|ref|YP_658801.1| - 0.002 17.5 0.5 0.055 12.8 0.0 3.3 2 1 2 5 5 5 1 AAA domain AAA_14 PF13173.1 gi|110668990|ref|YP_658801.1| - 0.0025 17.6 0.0 0.012 15.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain Cytidylate_kin2 PF13189.1 gi|110668990|ref|YP_658801.1| - 0.0048 16.8 0.0 0.014 15.2 0.0 1.8 1 0 0 1 1 1 1 Cytidylate kinase-like family Sigma54_activ_2 PF14532.1 gi|110668990|ref|YP_658801.1| - 0.011 15.8 0.0 0.021 14.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|110668990|ref|YP_658801.1| - 0.011 15.8 0.0 0.03 14.4 0.0 1.8 1 0 0 1 1 1 0 RNA helicase IstB_IS21 PF01695.12 gi|110668990|ref|YP_658801.1| - 0.014 14.8 0.0 0.026 13.9 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.7 gi|110668990|ref|YP_658801.1| - 0.017 14.7 0.0 4.7 6.8 0.0 2.5 1 1 0 2 2 2 0 NACHT domain Zeta_toxin PF06414.7 gi|110668990|ref|YP_658801.1| - 0.021 13.9 0.0 0.19 10.8 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin ABC_tran PF00005.22 gi|110668990|ref|YP_658801.1| - 0.022 15.0 0.0 0.088 13.1 0.0 2.0 2 0 0 2 2 1 0 ABC transporter AAA_3 PF07726.6 gi|110668990|ref|YP_658801.1| - 0.023 14.3 0.2 0.057 13.0 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.1 gi|110668990|ref|YP_658801.1| - 0.028 13.9 0.0 0.048 13.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|110668990|ref|YP_658801.1| - 0.034 13.8 0.0 0.14 11.8 0.0 2.0 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Mg_chelatase PF01078.16 gi|110668990|ref|YP_658801.1| - 0.036 13.2 0.0 0.077 12.1 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ResIII PF04851.10 gi|110668990|ref|YP_658801.1| - 0.056 13.2 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Rad17 PF03215.10 gi|110668990|ref|YP_658801.1| - 0.068 11.8 0.0 0.1 11.2 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein SRP54 PF00448.17 gi|110668990|ref|YP_658801.1| - 0.093 12.1 0.0 0.36 10.2 0.0 2.0 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain Lactamase_B_2 PF12706.2 gi|110668991|ref|YP_658802.1| - 1.2e-17 64.1 0.5 1.5e-17 63.7 0.3 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|110668991|ref|YP_658802.1| - 1.5e-06 28.0 2.1 2e-06 27.6 1.4 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily NifU PF01106.12 gi|110668993|ref|YP_658804.1| - 1.1e-07 31.4 0.1 1.6e-07 30.9 0.1 1.3 1 0 0 1 1 1 1 NifU-like domain ROK PF00480.15 gi|110668994|ref|YP_658805.1| - 3.9e-30 105.0 0.2 5.1e-30 104.6 0.2 1.2 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.15 gi|110668994|ref|YP_658805.1| - 3.9e-05 23.0 0.9 0.00014 21.3 0.3 1.9 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.16 gi|110668994|ref|YP_658805.1| - 0.026 13.8 0.1 0.053 12.8 0.1 1.6 1 1 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain zf-RING_3 PF14369.1 gi|110668996|ref|YP_658807.1| - 0.00078 19.3 5.1 0.069 13.1 0.0 3.2 3 0 0 3 3 3 2 zinc-finger zf-CHY PF05495.7 gi|110668996|ref|YP_658807.1| - 0.012 15.7 3.9 0.24 11.5 0.4 2.4 2 0 0 2 2 2 0 CHY zinc finger DZR PF12773.2 gi|110668996|ref|YP_658807.1| - 0.042 13.6 2.2 0.44 10.3 0.2 2.5 2 0 0 2 2 2 0 Double zinc ribbon Stc1 PF12898.2 gi|110668996|ref|YP_658807.1| - 0.071 13.1 1.9 9.5 6.3 0.2 2.8 2 1 0 2 2 2 0 Stc1 domain DUF4379 PF14311.1 gi|110668996|ref|YP_658807.1| - 0.65 9.8 5.0 0.12 12.2 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) zinc_ribbon_5 PF13719.1 gi|110668996|ref|YP_658807.1| - 1 8.9 4.5 2.9 7.5 0.0 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|110668996|ref|YP_658807.1| - 1.4 8.6 5.1 4.6 7.0 0.0 3.0 3 0 0 3 3 3 0 zinc-ribbon domain DUF164 PF02591.10 gi|110668996|ref|YP_658807.1| - 4.5 7.1 6.2 5.4 6.9 0.1 3.0 3 0 0 3 3 3 0 Putative zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|110668996|ref|YP_658807.1| - 7.5 6.4 8.0 13 5.7 2.8 2.8 2 1 0 2 2 2 0 Transposase zinc-ribbon domain HTH_20 PF12840.2 gi|110668997|ref|YP_658808.1| - 0.00068 19.3 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|110668997|ref|YP_658808.1| - 0.0028 17.2 0.2 0.004 16.7 0.2 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|110668997|ref|YP_658808.1| - 0.027 13.8 0.0 0.041 13.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|110668997|ref|YP_658808.1| - 0.041 13.5 0.0 0.053 13.2 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|110668997|ref|YP_658808.1| - 0.067 13.3 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.1 gi|110668997|ref|YP_658808.1| - 0.12 12.7 0.1 0.15 12.3 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain GCV_T PF01571.16 gi|110668998|ref|YP_658809.1| - 3.5e-33 114.7 0.0 5.3e-33 114.1 0.0 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|110668998|ref|YP_658809.1| - 1.6e-14 53.6 0.0 3.2e-14 52.7 0.0 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain FAD_binding_3 PF01494.14 gi|110668999|ref|YP_658810.1| - 3.3e-15 55.9 4.6 3.6e-12 46.0 0.9 3.0 2 1 0 2 2 2 1 FAD binding domain DAO PF01266.19 gi|110668999|ref|YP_658810.1| - 2.2e-09 36.7 3.6 9.5e-05 21.4 0.2 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|110668999|ref|YP_658810.1| - 3.9e-08 32.6 1.3 0.00073 18.5 0.0 2.6 2 1 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|110668999|ref|YP_658810.1| - 2.6e-07 30.7 0.0 9.1e-06 25.6 0.0 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|110668999|ref|YP_658810.1| - 0.00081 18.3 1.6 0.095 11.5 0.4 2.2 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.9 gi|110668999|ref|YP_658810.1| - 0.0016 17.0 0.2 0.02 13.3 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.2 gi|110668999|ref|YP_658810.1| - 0.0023 17.0 0.2 0.0032 16.5 0.1 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|110668999|ref|YP_658810.1| - 0.007 16.4 0.0 0.015 15.3 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.5 gi|110668999|ref|YP_658810.1| - 0.061 12.1 0.0 0.21 10.3 0.0 1.7 2 0 0 2 2 2 0 Squalene epoxidase FBPase_3 PF01950.11 gi|110668999|ref|YP_658810.1| - 0.16 10.8 0.0 0.24 10.3 0.0 1.1 1 0 0 1 1 1 0 Fructose-1,6-bisphosphatase PvlArgDC PF01862.11 gi|110669000|ref|YP_658811.1| - 6.5e-36 123.4 0.2 7.3e-36 123.2 0.1 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) AAA PF00004.24 gi|110669001|ref|YP_658812.1| - 3.6e-44 150.1 0.9 1.1e-43 148.5 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|110669001|ref|YP_658812.1| - 2.3e-08 34.1 0.4 8.4e-08 32.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|110669001|ref|YP_658812.1| - 7.3e-07 29.3 3.5 0.0011 19.0 0.0 3.2 2 2 2 4 4 4 2 AAA ATPase domain AAA_5 PF07728.9 gi|110669001|ref|YP_658812.1| - 7.7e-07 28.9 0.2 4.4e-06 26.4 0.1 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|110669001|ref|YP_658812.1| - 7.9e-07 28.3 0.0 2.2e-06 26.8 0.0 1.7 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|110669001|ref|YP_658812.1| - 1.7e-06 28.1 1.1 0.00011 22.3 0.1 2.9 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|110669001|ref|YP_658812.1| - 3.5e-05 24.6 0.7 8.9e-05 23.3 0.0 2.2 2 2 0 2 2 1 1 AAA domain AAA_18 PF13238.1 gi|110669001|ref|YP_658812.1| - 0.00016 21.9 0.1 0.0062 16.8 0.0 2.6 2 0 0 2 2 2 1 AAA domain DUF904 PF06005.7 gi|110669001|ref|YP_658812.1| - 0.00024 21.3 5.6 0.00028 21.0 3.0 1.8 2 0 0 2 2 1 1 Protein of unknown function (DUF904) AAA_19 PF13245.1 gi|110669001|ref|YP_658812.1| - 0.00029 20.5 0.1 0.00086 19.0 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_33 PF13671.1 gi|110669001|ref|YP_658812.1| - 0.00033 20.5 0.1 0.0012 18.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|110669001|ref|YP_658812.1| - 0.00037 19.3 0.1 0.00087 18.1 0.0 1.6 1 1 0 1 1 1 1 TIP49 C-terminus CASP_C PF08172.7 gi|110669001|ref|YP_658812.1| - 0.00044 19.3 0.8 0.00065 18.8 0.5 1.3 1 0 0 1 1 1 1 CASP C terminal AAA_14 PF13173.1 gi|110669001|ref|YP_658812.1| - 0.00044 20.1 0.0 0.0011 18.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|110669001|ref|YP_658812.1| - 0.00063 19.7 0.2 0.0054 16.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|110669001|ref|YP_658812.1| - 0.0012 17.8 0.0 0.0023 16.8 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NACHT PF05729.7 gi|110669001|ref|YP_658812.1| - 0.0014 18.3 0.2 0.021 14.4 0.0 2.3 2 0 0 2 2 2 1 NACHT domain IstB_IS21 PF01695.12 gi|110669001|ref|YP_658812.1| - 0.0016 17.8 0.0 0.0049 16.3 0.0 1.8 1 0 0 1 1 1 1 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|110669001|ref|YP_658812.1| - 0.0018 17.4 0.0 0.0047 16.0 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin Mg_chelatase PF01078.16 gi|110669001|ref|YP_658812.1| - 0.0026 16.9 0.0 0.0056 15.8 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI CENP-Q PF13094.1 gi|110669001|ref|YP_658812.1| - 0.004 17.1 4.8 0.012 15.6 2.6 2.1 2 0 0 2 2 2 1 CENP-Q, a CENPA-CAD centromere complex subunit NTPase_1 PF03266.10 gi|110669001|ref|YP_658812.1| - 0.005 16.5 0.0 0.014 15.1 0.0 1.8 1 0 0 1 1 1 1 NTPase Sigma54_activat PF00158.21 gi|110669001|ref|YP_658812.1| - 0.0051 16.2 0.2 0.068 12.6 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain NB-ARC PF00931.17 gi|110669001|ref|YP_658812.1| - 0.013 14.3 0.3 0.05 12.4 0.0 2.0 3 0 0 3 3 3 0 NB-ARC domain AAA_25 PF13481.1 gi|110669001|ref|YP_658812.1| - 0.016 14.6 8.3 0.26 10.6 0.1 3.8 2 2 1 3 3 3 0 AAA domain AAA_3 PF07726.6 gi|110669001|ref|YP_658812.1| - 0.017 14.6 0.0 0.031 13.8 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CPT PF07931.7 gi|110669001|ref|YP_658812.1| - 0.032 13.8 0.0 0.087 12.4 0.0 1.8 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein Torsin PF06309.6 gi|110669001|ref|YP_658812.1| - 0.033 14.0 0.0 0.064 13.1 0.0 1.4 1 0 0 1 1 1 0 Torsin RNA_helicase PF00910.17 gi|110669001|ref|YP_658812.1| - 0.036 14.2 0.0 0.075 13.2 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_11 PF13086.1 gi|110669001|ref|YP_658812.1| - 0.04 13.4 0.1 0.13 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.1 gi|110669001|ref|YP_658812.1| - 0.047 13.7 0.0 0.16 11.9 0.0 1.9 2 0 0 2 2 1 0 Sigma-54 interaction domain ABC_tran PF00005.22 gi|110669001|ref|YP_658812.1| - 0.062 13.6 0.2 0.23 11.7 0.0 2.2 2 1 0 2 2 1 0 ABC transporter Bac_DnaA PF00308.13 gi|110669001|ref|YP_658812.1| - 0.082 12.5 0.1 2.1 7.9 0.0 2.3 2 0 0 2 2 2 0 Bacterial dnaA protein KaiC PF06745.8 gi|110669001|ref|YP_658812.1| - 0.13 11.3 1.6 0.86 8.6 0.0 2.6 2 1 1 3 3 3 0 KaiC Nup54 PF13874.1 gi|110669001|ref|YP_658812.1| - 0.14 11.8 1.7 0.3 10.7 0.7 1.8 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 IncA PF04156.9 gi|110669001|ref|YP_658812.1| - 0.15 11.6 2.2 0.3 10.6 1.5 1.5 1 0 0 1 1 1 0 IncA protein Parvo_NS1 PF01057.12 gi|110669001|ref|YP_658812.1| - 0.17 10.7 0.0 0.29 9.9 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AATF-Che1 PF13339.1 gi|110669001|ref|YP_658812.1| - 0.21 11.7 3.1 0.25 11.5 1.3 1.9 2 0 0 2 2 1 0 Apoptosis antagonizing transcription factor Snapin_Pallidin PF14712.1 gi|110669001|ref|YP_658812.1| - 0.22 11.8 3.0 0.53 10.6 1.7 2.1 1 1 0 1 1 1 0 Snapin/Pallidin DUF972 PF06156.8 gi|110669001|ref|YP_658812.1| - 0.28 11.5 3.1 0.74 10.1 2.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF972) zf-HC2 PF13490.1 gi|110669001|ref|YP_658812.1| - 0.42 10.5 3.3 0.87 9.5 0.1 2.9 3 0 0 3 3 3 0 Putative zinc-finger BLOC1_2 PF10046.4 gi|110669001|ref|YP_658812.1| - 0.52 10.4 5.5 0.21 11.7 1.2 2.3 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 dUTPase PF00692.14 gi|110669002|ref|YP_658813.1| - 7.7e-10 38.3 0.0 1.2e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|110669002|ref|YP_658813.1| - 0.053 11.8 0.0 1.8 6.8 0.0 2.1 2 0 0 2 2 2 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Aconitase PF00330.15 gi|110669003|ref|YP_658814.1| - 3.8e-99 332.2 0.4 5.8e-70 236.0 0.0 2.2 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|110669003|ref|YP_658814.1| - 1.9e-21 76.5 0.0 3.4e-21 75.7 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain Barwin PF00967.12 gi|110669003|ref|YP_658814.1| - 0.095 12.3 0.2 0.36 10.5 0.0 2.0 2 0 0 2 2 2 0 Barwin family Acetyltransf_1 PF00583.19 gi|110669004|ref|YP_658815.1| - 1.5e-16 60.2 0.0 2e-16 59.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|110669004|ref|YP_658815.1| - 3.7e-09 36.2 0.0 5.9e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|110669004|ref|YP_658815.1| - 4.1e-08 33.3 0.0 5e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|110669004|ref|YP_658815.1| - 4.8e-05 23.2 0.0 5.5e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|110669004|ref|YP_658815.1| - 9.6e-05 22.4 0.0 0.00013 22.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|110669004|ref|YP_658815.1| - 0.0049 17.0 0.0 0.0056 16.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|110669004|ref|YP_658815.1| - 0.0088 15.6 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|110669004|ref|YP_658815.1| - 0.071 12.9 0.1 0.31 10.8 0.0 2.0 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|110669004|ref|YP_658815.1| - 0.15 11.8 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase NAD_binding_8 PF13450.1 gi|110669005|ref|YP_658816.1| - 1.5e-14 53.7 0.2 4.1e-14 52.3 0.1 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|110669005|ref|YP_658816.1| - 1.8e-09 37.2 1.1 1.6e-05 24.1 0.0 2.1 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase DAO PF01266.19 gi|110669005|ref|YP_658816.1| - 5.5e-08 32.1 0.0 2e-07 30.2 0.0 1.8 1 1 1 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|110669005|ref|YP_658816.1| - 1.5e-05 25.1 0.5 8.3e-05 22.7 0.3 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|110669005|ref|YP_658816.1| - 3.8e-05 23.4 0.2 0.051 13.3 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox_2 PF07992.9 gi|110669005|ref|YP_658816.1| - 3.8e-05 23.6 0.7 7.6e-05 22.6 0.5 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|110669005|ref|YP_658816.1| - 0.00017 20.7 0.2 0.00026 20.1 0.1 1.2 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|110669005|ref|YP_658816.1| - 0.00077 18.6 0.1 0.001 18.2 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|110669005|ref|YP_658816.1| - 0.0031 16.0 1.4 0.0093 14.4 1.0 1.7 2 0 0 2 2 2 1 HI0933-like protein 3HCDH_N PF02737.13 gi|110669005|ref|YP_658816.1| - 0.0061 16.2 0.0 0.01 15.4 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|110669005|ref|YP_658816.1| - 0.021 13.9 0.4 0.033 13.2 0.3 1.3 1 0 0 1 1 1 0 FAD binding domain ApbA PF02558.11 gi|110669005|ref|YP_658816.1| - 0.034 13.5 0.2 7.5 5.9 0.0 2.2 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA GIDA PF01134.17 gi|110669005|ref|YP_658816.1| - 0.044 12.6 1.4 0.073 11.9 1.0 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_binding_7 PF13241.1 gi|110669005|ref|YP_658816.1| - 0.057 13.6 0.1 0.15 12.3 0.1 1.9 1 1 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox PF00070.22 gi|110669005|ref|YP_658816.1| - 0.16 12.3 1.4 0.8 10.1 0.2 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|110669005|ref|YP_658816.1| - 0.23 10.2 5.2 0.11 11.2 2.0 1.6 2 0 0 2 2 2 0 FAD binding domain PHP_C PF13263.1 gi|110669006|ref|YP_658817.1| - 1.6e-21 75.5 0.3 8.5e-21 73.2 0.1 2.1 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|110669006|ref|YP_658817.1| - 8.4e-15 54.9 0.0 6.4e-14 52.1 0.0 2.0 1 1 0 1 1 1 1 PHP domain TfuA PF07812.7 gi|110669006|ref|YP_658817.1| - 0.046 13.1 0.5 0.3 10.5 0.2 2.1 2 0 0 2 2 2 0 TfuA-like protein HTH_AsnC-type PF13404.1 gi|110669007|ref|YP_658818.1| - 9.1e-05 21.9 0.1 0.00088 18.7 0.0 2.4 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Glycos_transf_3 PF00591.16 gi|110669008|ref|YP_658819.1| - 1.1e-30 106.9 0.0 2.6e-30 105.6 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|110669008|ref|YP_658819.1| - 7.3e-10 38.2 0.2 4.1e-09 35.8 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Pro_isomerase PF00160.16 gi|110669009|ref|YP_658820.1| - 1.6e-49 168.0 0.0 1.8e-49 167.9 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Fer4_15 PF13459.1 gi|110669010|ref|YP_658821.1| - 0.0035 17.8 0.5 0.0035 17.8 0.3 1.9 2 1 0 2 2 2 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|110669011|ref|YP_658822.1| - 2.9e-15 56.8 0.0 4.8e-15 56.1 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily DUF457 PF04307.9 gi|110669012|ref|YP_658823.1| - 1.5e-07 30.9 10.8 2.5e-07 30.1 7.5 1.4 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) ABC2_membrane_4 PF12730.2 gi|110669012|ref|YP_658823.1| - 0.0033 16.6 0.7 0.0059 15.7 0.5 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein PRA1 PF03208.14 gi|110669012|ref|YP_658823.1| - 0.14 11.4 0.1 0.27 10.5 0.1 1.5 1 0 0 1 1 1 0 PRA1 family protein Radical_SAM PF04055.16 gi|110669013|ref|YP_658824.1| - 3e-10 40.5 0.0 1.3e-09 38.3 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Spore-coat_CotZ PF10612.4 gi|110669013|ref|YP_658824.1| - 0.044 13.6 0.1 0.079 12.8 0.1 1.3 1 0 0 1 1 1 0 Spore coat protein Z GPAT_N PF14829.1 gi|110669013|ref|YP_658824.1| - 0.082 12.6 0.0 16 5.2 0.0 2.6 2 0 0 2 2 2 0 Glycerol-3-phosphate acyltransferase N-terminal KdpD PF02702.12 gi|110669013|ref|YP_658824.1| - 0.096 11.8 0.0 0.22 10.6 0.0 1.5 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain SAICAR_synt PF01259.13 gi|110669014|ref|YP_658825.1| - 3.2e-18 65.7 0.0 1.7e-17 63.3 0.0 1.8 1 1 0 1 1 1 1 SAICAR synthetase DUF4259 PF14078.1 gi|110669014|ref|YP_658825.1| - 0.018 15.5 1.3 0.08 13.4 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4259) Formyl_trans_N PF00551.14 gi|110669015|ref|YP_658826.1| - 2.1e-40 138.1 0.0 3.2e-40 137.6 0.0 1.3 1 0 0 1 1 1 1 Formyl transferase ACT_6 PF13740.1 gi|110669015|ref|YP_658826.1| - 1.7e-10 40.4 0.4 3.7e-10 39.3 0.3 1.5 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|110669015|ref|YP_658826.1| - 1.5e-07 30.7 1.5 4e-07 29.3 0.2 2.4 3 0 0 3 3 3 1 ACT domain ACT_4 PF13291.1 gi|110669015|ref|YP_658826.1| - 0.00021 21.5 0.3 0.00068 19.9 0.2 1.8 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.1 gi|110669015|ref|YP_658826.1| - 0.042 13.3 0.1 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 ACT domain MTS_N PF08468.6 gi|110669015|ref|YP_658826.1| - 0.072 12.9 0.0 0.69 9.7 0.0 2.0 1 1 1 2 2 2 0 Methyltransferase small domain N-terminal Glyco_transf_28 PF03033.15 gi|110669015|ref|YP_658826.1| - 0.095 12.4 0.0 0.25 11.1 0.0 1.7 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain PurS PF02700.9 gi|110669016|ref|YP_658827.1| - 1.5e-26 92.1 0.0 1.7e-26 91.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase AP_endonuc_2 PF01261.19 gi|110669016|ref|YP_658827.1| - 0.014 14.6 0.1 0.015 14.5 0.0 1.1 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel DUF1822 PF08852.6 gi|110669016|ref|YP_658827.1| - 0.082 11.7 0.0 0.086 11.6 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1822) AP2 PF00847.15 gi|110669016|ref|YP_658827.1| - 0.54 10.4 3.2 13 5.9 0.9 2.1 1 1 1 2 2 2 0 AP2 domain GATase_5 PF13507.1 gi|110669017|ref|YP_658828.1| - 7.9e-45 152.7 0.0 9.5e-45 152.5 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|110669017|ref|YP_658828.1| - 1.1e-08 34.7 0.0 1.4e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|110669017|ref|YP_658828.1| - 3.5e-06 26.6 0.0 5.9e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|110669017|ref|YP_658828.1| - 0.00031 20.2 0.2 0.00093 18.6 0.1 1.7 1 1 0 1 1 1 1 Peptidase C26 DUF4066 PF13278.1 gi|110669017|ref|YP_658828.1| - 0.0014 17.9 0.0 0.0023 17.2 0.0 1.3 1 1 0 1 1 1 1 Putative amidotransferase DJ-1_PfpI PF01965.19 gi|110669017|ref|YP_658828.1| - 0.0042 16.5 0.0 0.0065 15.9 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family AfsA PF03756.8 gi|110669020|ref|YP_658831.1| - 0.0026 17.4 1.1 0.049 13.3 0.0 3.0 3 0 0 3 3 3 1 A-factor biosynthesis hotdog domain CarboxypepD_reg PF13620.1 gi|110669020|ref|YP_658831.1| - 4.9 7.2 9.5 3.7 7.6 0.4 4.0 4 1 0 4 4 4 0 Carboxypeptidase regulatory-like domain Lactamase_B PF00753.22 gi|110669022|ref|YP_658833.1| - 3e-21 75.9 2.7 5e-21 75.2 1.9 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|110669022|ref|YP_658833.1| - 1.2e-05 24.9 0.2 1.9e-05 24.3 0.2 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain PDEase_II PF02112.10 gi|110669022|ref|YP_658833.1| - 0.14 11.0 0.5 0.43 9.4 0.2 1.7 2 0 0 2 2 2 0 cAMP phosphodiesterases class-II tRNA-synt_2b PF00587.20 gi|110669023|ref|YP_658834.1| - 1.9e-34 118.7 0.0 2.6e-34 118.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|110669023|ref|YP_658834.1| - 9.8e-28 96.3 6.7 1.4e-27 95.8 4.7 1.2 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain DUF342 PF03961.8 gi|110669023|ref|YP_658834.1| - 0.078 11.3 1.2 0.11 10.8 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) tRNA-synt_His PF13393.1 gi|110669023|ref|YP_658834.1| - 0.14 11.1 1.5 1.7 7.5 0.0 2.1 2 0 0 2 2 2 0 Histidyl-tRNA synthetase DUF4391 PF14335.1 gi|110669023|ref|YP_658834.1| - 0.19 11.0 1.5 0.29 10.5 1.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4391) Mnd1 PF03962.10 gi|110669023|ref|YP_658834.1| - 0.21 11.2 3.7 0.33 10.5 2.5 1.2 1 0 0 1 1 1 0 Mnd1 family LUC7 PF03194.10 gi|110669023|ref|YP_658834.1| - 0.28 10.7 2.0 0.41 10.1 1.4 1.1 1 0 0 1 1 1 0 LUC7 N_terminus DUF904 PF06005.7 gi|110669023|ref|YP_658834.1| - 0.96 9.7 8.5 81 3.6 5.9 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF904) DUF367 PF04034.8 gi|110669024|ref|YP_658835.1| - 1.7e-41 140.7 0.0 2.2e-41 140.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|110669024|ref|YP_658835.1| - 3.6e-09 36.0 0.0 5.4e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI MMR_HSR1 PF01926.18 gi|110669025|ref|YP_658836.1| - 3.2e-20 72.2 0.0 6.6e-20 71.2 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.9 gi|110669025|ref|YP_658836.1| - 1.2e-17 63.5 0.0 2.4e-17 62.5 0.0 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.13 gi|110669025|ref|YP_658836.1| - 1.7e-12 46.8 0.0 2.5e-12 46.3 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|110669025|ref|YP_658836.1| - 2.3e-08 34.0 0.3 0.0027 17.5 0.0 3.2 2 1 1 3 3 3 2 Dynamin family Miro PF08477.8 gi|110669025|ref|YP_658836.1| - 7e-06 26.5 0.0 1.7e-05 25.3 0.0 1.7 1 0 0 1 1 1 1 Miro-like protein AIG1 PF04548.11 gi|110669025|ref|YP_658836.1| - 0.0015 17.7 0.0 0.0024 16.9 0.0 1.5 1 0 0 1 1 1 1 AIG1 family AAA_16 PF13191.1 gi|110669025|ref|YP_658836.1| - 0.011 15.7 0.2 0.16 11.9 0.0 2.5 1 1 1 2 2 2 0 AAA ATPase domain GTP_EFTU PF00009.22 gi|110669025|ref|YP_658836.1| - 0.048 13.0 0.0 2.2 7.6 0.0 2.9 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain DUF258 PF03193.11 gi|110669025|ref|YP_658836.1| - 0.054 12.6 0.0 0.17 11.0 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function, DUF258 Ras PF00071.17 gi|110669025|ref|YP_658836.1| - 0.067 12.5 0.0 0.38 10.1 0.0 2.2 1 1 0 1 1 1 0 Ras family AAA_17 PF13207.1 gi|110669025|ref|YP_658836.1| - 0.15 12.9 0.4 0.87 10.4 0.0 2.3 2 2 0 2 2 2 0 AAA domain DUF389 PF04087.9 gi|110669026|ref|YP_658837.1| - 1.9e-35 121.8 22.6 1.9e-35 121.8 15.7 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF389) DuffyBP_N PF12377.3 gi|110669026|ref|YP_658837.1| - 0.13 12.5 0.0 22 5.3 0.0 2.3 2 0 0 2 2 2 0 Duffy binding protein N terminal TrkA_N PF02254.13 gi|110669028|ref|YP_658839.1| - 4.5e-25 87.9 1.0 7.5e-25 87.1 0.7 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|110669028|ref|YP_658839.1| - 1.6e-08 34.0 1.0 4e-08 32.7 0.1 2.0 2 0 0 2 2 2 1 TrkA-C domain DAO PF01266.19 gi|110669028|ref|YP_658839.1| - 1.5e-07 30.6 0.4 1.9e-07 30.3 0.3 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|110669028|ref|YP_658839.1| - 1.6e-06 28.3 0.3 3.1e-06 27.3 0.2 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|110669028|ref|YP_658839.1| - 2.2e-06 26.9 0.1 2.7e-06 26.6 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain AdoHcyase_NAD PF00670.16 gi|110669028|ref|YP_658839.1| - 2.1e-05 24.3 0.5 0.00011 22.0 0.2 2.0 1 1 1 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|110669028|ref|YP_658839.1| - 9.5e-05 21.8 0.2 0.00018 20.9 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.1 gi|110669028|ref|YP_658839.1| - 0.00013 21.9 2.3 0.00025 21.0 1.1 1.7 1 1 1 2 2 2 1 NADH(P)-binding Pyr_redox PF00070.22 gi|110669028|ref|YP_658839.1| - 0.00049 20.4 0.1 0.0013 19.1 0.1 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|110669028|ref|YP_658839.1| - 0.0006 19.7 0.4 0.0013 18.6 0.2 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|110669028|ref|YP_658839.1| - 0.00083 18.5 0.1 0.0011 18.1 0.1 1.2 1 0 0 1 1 1 1 Thi4 family AlaDh_PNT_C PF01262.16 gi|110669028|ref|YP_658839.1| - 0.0014 18.1 0.3 0.0031 17.0 0.1 1.7 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.1 gi|110669028|ref|YP_658839.1| - 0.0015 18.5 0.4 0.0015 18.5 0.3 1.7 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.13 gi|110669028|ref|YP_658839.1| - 0.0021 17.7 0.3 0.0044 16.6 0.2 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|110669028|ref|YP_658839.1| - 0.0028 17.4 0.7 0.096 12.5 0.1 2.3 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase FAD_binding_2 PF00890.19 gi|110669028|ref|YP_658839.1| - 0.0032 16.3 0.8 0.0043 15.9 0.6 1.2 1 0 0 1 1 1 1 FAD binding domain XdhC_C PF13478.1 gi|110669028|ref|YP_658839.1| - 0.0041 17.4 0.1 0.011 16.0 0.1 1.7 2 0 0 2 2 2 1 XdhC Rossmann domain Saccharop_dh PF03435.13 gi|110669028|ref|YP_658839.1| - 0.0043 16.0 0.9 0.016 14.2 0.3 1.8 1 1 1 2 2 2 1 Saccharopine dehydrogenase ApbA PF02558.11 gi|110669028|ref|YP_658839.1| - 0.0098 15.3 0.4 0.018 14.4 0.2 1.5 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA HI0933_like PF03486.9 gi|110669028|ref|YP_658839.1| - 0.016 13.6 0.1 0.029 12.8 0.1 1.4 1 0 0 1 1 1 0 HI0933-like protein IlvN PF07991.7 gi|110669028|ref|YP_658839.1| - 0.019 14.3 0.1 0.033 13.5 0.1 1.6 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Pyr_redox_3 PF13738.1 gi|110669028|ref|YP_658839.1| - 0.027 14.5 0.3 0.056 13.5 0.1 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|110669028|ref|YP_658839.1| - 0.058 13.1 0.6 0.11 12.2 0.0 1.8 3 0 0 3 3 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|110669028|ref|YP_658839.1| - 0.064 12.4 0.3 0.15 11.1 0.1 1.7 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|110669028|ref|YP_658839.1| - 0.075 13.4 0.8 0.21 12.0 0.4 2.1 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Lycopene_cycl PF05834.7 gi|110669028|ref|YP_658839.1| - 0.083 11.7 1.1 0.085 11.7 0.1 1.5 2 0 0 2 2 2 0 Lycopene cyclase protein CPSase_L_chain PF00289.17 gi|110669028|ref|YP_658839.1| - 0.094 12.8 0.1 0.21 11.6 0.1 1.6 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain UPF0146 PF03686.8 gi|110669028|ref|YP_658839.1| - 0.14 12.0 0.8 0.35 10.6 0.2 1.8 1 1 0 2 2 2 0 Uncharacterised protein family (UPF0146) ABC2_membrane_2 PF12679.2 gi|110669029|ref|YP_658840.1| - 0.036 12.9 9.2 0.044 12.6 6.4 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein Thymidylate_kin PF02223.12 gi|110669030|ref|YP_658841.1| - 9.5e-39 132.6 0.0 1.1e-38 132.4 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_33 PF13671.1 gi|110669030|ref|YP_658841.1| - 2e-05 24.4 0.0 3.3e-05 23.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|110669030|ref|YP_658841.1| - 0.00016 22.0 0.0 0.0004 20.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|110669030|ref|YP_658841.1| - 0.00067 19.6 0.1 0.00084 19.3 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|110669030|ref|YP_658841.1| - 0.0026 17.8 0.0 0.01 16.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain CPT PF07931.7 gi|110669030|ref|YP_658841.1| - 0.0095 15.5 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein AAA_17 PF13207.1 gi|110669030|ref|YP_658841.1| - 0.014 16.1 0.1 0.026 15.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|110669030|ref|YP_658841.1| - 0.048 13.1 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain APS_kinase PF01583.15 gi|110669030|ref|YP_658841.1| - 0.059 13.0 0.0 0.089 12.4 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase KTI12 PF08433.5 gi|110669030|ref|YP_658841.1| - 0.12 11.5 0.0 0.19 10.9 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NAD_binding_10 PF13460.1 gi|110669031|ref|YP_658842.1| - 2.2e-26 92.9 0.4 5.6e-26 91.6 0.0 1.7 2 0 0 2 2 2 1 NADH(P)-binding Epimerase PF01370.16 gi|110669031|ref|YP_658842.1| - 1.6e-17 63.7 0.0 7.8e-17 61.4 0.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|110669031|ref|YP_658842.1| - 2.2e-14 52.8 0.0 4.6e-12 45.2 0.0 2.1 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|110669031|ref|YP_658842.1| - 1.7e-13 50.1 0.0 1.7e-06 27.1 0.0 2.2 2 0 0 2 2 2 2 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|110669031|ref|YP_658842.1| - 3.9e-06 25.9 0.0 0.013 14.3 0.0 2.4 1 1 0 2 2 2 2 Male sterility protein NmrA PF05368.8 gi|110669031|ref|YP_658842.1| - 2.2e-05 23.8 0.0 4.9e-05 22.6 0.0 1.5 1 1 0 1 1 1 1 NmrA-like family Polysacc_synt_2 PF02719.10 gi|110669031|ref|YP_658842.1| - 9.9e-05 21.3 0.0 0.00066 18.6 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|110669031|ref|YP_658842.1| - 0.00048 20.0 0.0 0.0017 18.2 0.0 1.7 1 1 0 1 1 1 1 short chain dehydrogenase TrkA_N PF02254.13 gi|110669031|ref|YP_658842.1| - 0.018 15.0 0.0 0.035 14.1 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain Pyr_redox PF00070.22 gi|110669031|ref|YP_658842.1| - 0.065 13.6 0.0 0.16 12.3 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|110669031|ref|YP_658842.1| - 0.071 12.5 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DapB_N PF01113.15 gi|110669031|ref|YP_658842.1| - 0.072 13.0 0.0 0.14 12.1 0.0 1.6 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Nab6_mRNP_bdg PF10567.4 gi|110669031|ref|YP_658842.1| - 0.13 11.2 0.1 0.19 10.6 0.1 1.1 1 0 0 1 1 1 0 RNA-recognition motif Tubulin PF00091.20 gi|110669032|ref|YP_658843.1| - 6e-27 94.8 0.1 1.6e-26 93.4 0.0 1.7 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain DUF4398 PF14346.1 gi|110669033|ref|YP_658844.1| - 0.00048 20.1 3.4 0.00085 19.3 2.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4398) DUF1771 PF08590.5 gi|110669033|ref|YP_658844.1| - 0.017 15.1 1.2 0.027 14.4 0.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1771) DUF3708 PF12501.3 gi|110669033|ref|YP_658844.1| - 0.023 14.5 1.0 0.057 13.2 0.7 1.6 1 0 0 1 1 1 0 Phosphate ATP-binding cassette transporter Rsd_AlgQ PF04353.8 gi|110669033|ref|YP_658844.1| - 0.082 12.6 0.1 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ PTS_IIA PF02255.11 gi|110669033|ref|YP_658844.1| - 0.088 12.6 3.4 0.11 12.3 1.4 1.8 1 1 1 2 2 2 0 PTS system, Lactose/Cellobiose specific IIA subunit HemY_N PF07219.8 gi|110669033|ref|YP_658844.1| - 1.3 8.6 4.3 0.32 10.5 0.3 1.9 2 0 0 2 2 2 0 HemY protein N-terminus CofC PF01983.11 gi|110669034|ref|YP_658845.1| - 3.6e-37 127.4 0.0 1.4e-27 96.0 0.0 2.1 2 0 0 2 2 2 2 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|110669034|ref|YP_658845.1| - 0.0076 16.3 0.1 0.026 14.6 0.1 1.8 1 1 0 1 1 1 1 MobA-like NTP transferase domain DUF3236 PF11576.3 gi|110669034|ref|YP_658845.1| - 0.022 14.1 0.1 0.046 13.1 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3236) CDC48_N PF02359.13 gi|110669034|ref|YP_658845.1| - 0.057 13.3 0.1 0.32 10.9 0.0 2.2 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain MMR_HSR1 PF01926.18 gi|110669035|ref|YP_658846.1| - 6.4e-17 61.5 0.0 9.5e-17 61.0 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|110669035|ref|YP_658846.1| - 1.3e-12 47.3 0.0 1.7e-11 43.6 0.0 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|110669035|ref|YP_658846.1| - 1.3e-06 28.0 0.0 0.0008 18.8 0.0 2.3 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain AIG1 PF04548.11 gi|110669035|ref|YP_658846.1| - 5.1e-05 22.4 0.0 9e-05 21.6 0.0 1.4 1 0 0 1 1 1 1 AIG1 family DUF258 PF03193.11 gi|110669035|ref|YP_658846.1| - 0.0041 16.3 0.1 0.0072 15.5 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|110669035|ref|YP_658846.1| - 0.0056 16.9 0.0 0.0085 16.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|110669035|ref|YP_658846.1| - 0.022 15.0 0.1 0.032 14.5 0.0 1.6 1 1 0 1 1 1 0 ABC transporter ATP_bind_1 PF03029.12 gi|110669035|ref|YP_658846.1| - 0.026 14.0 0.7 0.55 9.7 0.0 2.2 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein Dynamin_N PF00350.18 gi|110669035|ref|YP_658846.1| - 0.059 13.1 0.2 0.34 10.6 0.1 1.9 1 1 1 2 2 2 0 Dynamin family AAA_29 PF13555.1 gi|110669035|ref|YP_658846.1| - 0.076 12.5 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|110669035|ref|YP_658846.1| - 0.096 13.5 0.1 0.24 12.2 0.1 2.0 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|110669035|ref|YP_658846.1| - 0.098 13.1 0.1 0.25 11.8 0.1 2.0 1 1 0 1 1 1 0 Miro-like protein Arch_ATPase PF01637.13 gi|110669035|ref|YP_658846.1| - 0.12 12.0 0.0 0.3 10.7 0.0 1.6 2 0 0 2 2 2 0 Archaeal ATPase Prok-JAB PF14464.1 gi|110669036|ref|YP_658847.1| - 3.3e-13 49.1 0.2 3.3e-13 49.1 0.1 1.6 2 0 0 2 2 2 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|110669036|ref|YP_658847.1| - 9.5e-08 31.7 0.3 1.7e-07 30.9 0.0 1.5 2 0 0 2 2 2 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Rhodanese PF00581.15 gi|110669037|ref|YP_658848.1| - 3.8e-15 56.2 0.0 4.7e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain F420_ligase PF01996.11 gi|110669038|ref|YP_658849.1| - 1.1e-64 217.5 0.0 1.3e-64 217.4 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Bac_luciferase PF00296.15 gi|110669039|ref|YP_658850.1| - 1.3e-54 185.4 2.4 1.8e-54 184.9 1.7 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase H_PPase PF03030.11 gi|110669040|ref|YP_658851.1| - 0.0096 14.2 1.1 0.011 14.0 0.8 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase YrhK PF14145.1 gi|110669040|ref|YP_658851.1| - 0.19 11.4 4.2 0.43 10.2 2.9 1.9 1 1 0 1 1 1 0 YrhK-like protein ABC2_membrane PF01061.19 gi|110669040|ref|YP_658851.1| - 1.6 7.8 9.9 1.8 7.6 6.9 1.1 1 0 0 1 1 1 0 ABC-2 type transporter Zn_Tnp_IS1595 PF12760.2 gi|110669041|ref|YP_658852.1| - 0.015 15.1 2.5 0.025 14.3 1.7 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Nudix_N_2 PF14803.1 gi|110669041|ref|YP_658852.1| - 0.044 13.4 0.7 0.13 11.9 0.5 1.8 1 1 0 1 1 1 0 Nudix N-terminal DZR PF12773.2 gi|110669041|ref|YP_658852.1| - 0.26 11.1 3.3 0.79 9.5 2.3 1.8 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS91 PF14319.1 gi|110669041|ref|YP_658852.1| - 0.36 10.3 2.5 0.2 11.1 0.5 1.5 1 1 0 1 1 1 0 Transposase zinc-binding domain PolC_DP2 PF03833.8 gi|110669041|ref|YP_658852.1| - 0.49 7.9 1.9 0.57 7.7 1.3 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 MutL_C PF08676.6 gi|110669042|ref|YP_658853.1| - 1.2e-27 96.2 0.0 2.9e-27 95.0 0.0 1.6 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.14 gi|110669042|ref|YP_658853.1| - 4.3e-27 93.9 0.1 7.9e-27 93.0 0.0 1.4 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.1 gi|110669042|ref|YP_658853.1| - 4.4e-13 49.0 0.5 2.4e-12 46.6 0.1 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|110669042|ref|YP_658853.1| - 6.7e-09 35.4 0.1 1.7e-08 34.1 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MutS_V PF00488.16 gi|110669043|ref|YP_658854.1| - 5.2e-91 304.2 0.4 9.5e-91 303.3 0.3 1.4 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|110669043|ref|YP_658854.1| - 1.4e-40 139.2 3.6 3.5e-40 137.9 2.5 1.7 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.15 gi|110669043|ref|YP_658854.1| - 7.2e-34 116.2 0.0 1.6e-33 115.1 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.13 gi|110669043|ref|YP_658854.1| - 3.8e-27 94.2 0.5 1.8e-26 92.1 0.1 2.3 2 0 0 2 2 2 1 MutS family domain IV MutS_II PF05188.12 gi|110669043|ref|YP_658854.1| - 3.6e-11 43.2 0.0 9e-11 41.9 0.0 1.7 1 0 0 1 1 1 1 MutS domain II AAA_29 PF13555.1 gi|110669043|ref|YP_658854.1| - 0.02 14.4 0.0 0.047 13.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|110669043|ref|YP_658854.1| - 0.027 14.7 0.1 0.12 12.6 0.0 2.2 1 1 0 1 1 1 0 ABC transporter AAA_14 PF13173.1 gi|110669043|ref|YP_658854.1| - 0.027 14.3 0.0 0.072 12.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|110669043|ref|YP_658854.1| - 0.043 14.1 0.3 0.54 10.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_3 PF07726.6 gi|110669044|ref|YP_658855.1| - 4.4e-59 197.7 0.3 7.9e-59 196.9 0.2 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|110669044|ref|YP_658855.1| - 1.7e-12 47.2 0.0 7e-12 45.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|110669044|ref|YP_658855.1| - 1.2e-07 32.0 0.0 1.1e-06 28.8 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|110669044|ref|YP_658855.1| - 3.1e-05 23.5 0.0 0.0031 16.9 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain MCM PF00493.18 gi|110669044|ref|YP_658855.1| - 0.00044 19.1 0.0 0.12 11.1 0.0 2.4 2 1 0 2 2 2 2 MCM2/3/5 family Mg_chelatase PF01078.16 gi|110669044|ref|YP_658855.1| - 0.00076 18.7 0.1 0.0027 16.8 0.0 1.9 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|110669044|ref|YP_658855.1| - 0.002 17.2 0.1 0.014 14.4 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|110669044|ref|YP_658855.1| - 0.023 14.8 0.1 0.34 11.0 0.0 2.5 2 1 1 3 3 3 0 AAA domain DUF58 PF01882.13 gi|110669045|ref|YP_658856.1| - 1.5e-18 66.7 0.1 2.8e-18 65.8 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 Transglut_core PF01841.14 gi|110669046|ref|YP_658857.1| - 1.8e-27 95.7 1.7 3.3e-27 94.9 0.0 2.4 3 1 1 4 4 4 1 Transglutaminase-like superfamily DUF4129 PF13559.1 gi|110669046|ref|YP_658857.1| - 3.8e-06 26.7 9.0 7.7e-06 25.7 5.0 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) Transglut_core3 PF13471.1 gi|110669046|ref|YP_658857.1| - 5e-06 26.2 0.0 2.6e-05 23.9 0.0 2.3 2 0 0 2 2 2 1 Transglutaminase-like superfamily DUF4218 PF13960.1 gi|110669046|ref|YP_658857.1| - 0.12 11.8 0.0 0.25 10.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4218) SUI1 PF01253.17 gi|110669047|ref|YP_658858.1| - 1.1e-24 86.0 0.0 1.3e-24 85.8 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|110669047|ref|YP_658858.1| - 0.066 13.4 0.0 0.094 12.9 0.0 1.5 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.10 gi|110669047|ref|YP_658858.1| - 0.073 12.2 0.3 0.087 12.0 0.2 1.1 1 0 0 1 1 1 0 DTW domain DUF2631 PF10939.3 gi|110669047|ref|YP_658858.1| - 0.12 12.2 0.1 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2631) NUDIX PF00293.23 gi|110669048|ref|YP_658859.1| - 1.6e-14 53.6 0.1 2.3e-14 53.1 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain GATase PF00117.23 gi|110669051|ref|YP_658862.1| - 8.6e-43 146.0 0.0 4.8e-31 107.6 0.0 2.0 1 1 1 2 2 2 2 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|110669051|ref|YP_658862.1| - 0.00013 21.4 0.0 0.052 12.9 0.0 2.5 2 1 0 2 2 2 2 Peptidase C26 Chorismate_bind PF00425.13 gi|110669052|ref|YP_658863.1| - 5.8e-87 291.2 0.1 1e-85 287.1 0.0 2.2 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|110669052|ref|YP_658863.1| - 1.8e-22 79.8 1.0 1.6e-21 76.7 0.0 2.9 3 2 1 4 4 4 1 Anthranilate synthase component I, N terminal region PRAI PF00697.17 gi|110669053|ref|YP_658864.1| - 1.2e-37 129.4 0.6 1.4e-37 129.1 0.4 1.1 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase His_biosynth PF00977.16 gi|110669053|ref|YP_658864.1| - 0.02 14.1 2.5 0.14 11.3 1.7 2.4 1 1 0 1 1 1 0 Histidine biosynthesis protein TMP-TENI PF02581.12 gi|110669053|ref|YP_658864.1| - 0.047 12.8 3.2 0.039 13.0 0.7 1.8 1 1 0 2 2 2 0 Thiamine monophosphate synthase/TENI Tim44 PF04280.10 gi|110669053|ref|YP_658864.1| - 0.049 13.6 0.0 0.094 12.7 0.0 1.4 1 0 0 1 1 1 0 Tim44-like domain GFO_IDH_MocA PF01408.17 gi|110669053|ref|YP_658864.1| - 0.058 13.9 1.3 0.74 10.3 0.0 2.7 2 1 1 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold Glycos_transf_3 PF00591.16 gi|110669054|ref|YP_658865.1| - 9.8e-93 310.1 3.1 1.2e-92 309.8 2.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|110669054|ref|YP_658865.1| - 3.4e-16 58.5 1.2 1e-15 57.0 0.8 1.9 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.3 gi|110669054|ref|YP_658865.1| - 0.054 12.9 0.0 0.14 11.6 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2717) LMWPc PF01451.16 gi|110669055|ref|YP_658866.1| - 3.7e-28 98.5 0.1 4.4e-28 98.3 0.1 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase Fer2 PF00111.22 gi|110669056|ref|YP_658867.1| - 8.9e-12 44.5 0.1 2.7e-11 43.0 0.0 1.8 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain DnaJ PF00226.26 gi|110669056|ref|YP_658867.1| - 4.6e-09 35.8 0.0 8.1e-09 35.0 0.0 1.4 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.1 gi|110669056|ref|YP_658867.1| - 0.0076 15.6 0.0 0.013 14.8 0.0 1.4 1 0 0 1 1 1 1 A repeated domain in UCH-protein Fer2_3 PF13085.1 gi|110669056|ref|YP_658867.1| - 0.015 15.1 0.1 0.039 13.7 0.0 1.7 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain CBS PF00571.23 gi|110669057|ref|YP_658868.1| - 8.9e-36 121.4 8.4 4.5e-11 42.3 0.1 4.4 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.14 gi|110669057|ref|YP_658868.1| - 0.0036 17.7 0.1 0.082 13.3 0.0 2.7 3 1 0 3 3 3 1 Sigma 54 modulation protein / S30EA ribosomal protein Surf_Ag_VNR PF07244.10 gi|110669057|ref|YP_658868.1| - 0.019 15.4 0.0 0.097 13.1 0.0 2.1 2 0 0 2 2 2 0 Surface antigen variable number repeat Rad51 PF08423.6 gi|110669058|ref|YP_658869.1| - 8.6e-28 96.9 0.2 1.8e-15 56.5 0.1 2.0 2 0 0 2 2 2 2 Rad51 AAA_25 PF13481.1 gi|110669058|ref|YP_658869.1| - 3.3e-12 46.2 0.2 9.6e-12 44.7 0.1 1.8 1 1 0 1 1 1 1 AAA domain RecA PF00154.16 gi|110669058|ref|YP_658869.1| - 2.5e-08 33.3 0.9 3.6e-08 32.8 0.3 1.5 2 1 0 2 2 2 1 recA bacterial DNA recombination protein KaiC PF06745.8 gi|110669058|ref|YP_658869.1| - 6.6e-08 31.9 0.0 1.1e-06 27.8 0.0 2.2 1 1 0 1 1 1 1 KaiC Zot PF05707.7 gi|110669058|ref|YP_658869.1| - 5.4e-06 26.0 0.0 6.3e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) DnaB_C PF03796.10 gi|110669058|ref|YP_658869.1| - 6.3e-05 21.9 0.1 0.00029 19.7 0.0 2.0 3 0 0 3 3 3 1 DnaB-like helicase C terminal domain PAXNEB PF05625.6 gi|110669058|ref|YP_658869.1| - 0.0069 15.2 0.1 0.018 13.8 0.1 1.6 2 0 0 2 2 2 1 PAXNEB protein AAA_10 PF12846.2 gi|110669058|ref|YP_658869.1| - 0.0077 15.6 0.1 0.49 9.7 0.0 2.3 2 1 0 2 2 2 1 AAA-like domain AAA_19 PF13245.1 gi|110669058|ref|YP_658869.1| - 0.013 15.2 0.1 0.058 13.1 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain ATP-synt_ab PF00006.20 gi|110669058|ref|YP_658869.1| - 0.014 14.9 0.1 0.021 14.3 0.1 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_16 PF13191.1 gi|110669058|ref|YP_658869.1| - 0.029 14.3 0.1 0.044 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|110669058|ref|YP_658869.1| - 0.11 12.1 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase cobW PF02492.14 gi|110669058|ref|YP_658869.1| - 0.12 11.7 0.1 14 5.0 0.0 2.8 2 1 1 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain Big_3_3 PF13750.1 gi|110669059|ref|YP_658870.1| - 0.036 13.4 0.0 0.062 12.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) DUF460 PF04312.8 gi|110669059|ref|YP_658870.1| - 0.067 12.7 0.3 0.14 11.6 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF460) DUF111 PF01969.12 gi|110669060|ref|YP_658871.1| - 1.9e-131 438.4 7.0 7.5e-131 436.4 4.9 1.7 1 1 0 1 1 1 1 Protein of unknown function DUF111 DUF1510 PF07423.6 gi|110669060|ref|YP_658871.1| - 2.6 7.3 12.8 4.2 6.6 8.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) Hid1 PF12722.2 gi|110669060|ref|YP_658871.1| - 7.5 4.0 8.0 10 3.6 5.6 1.0 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein AAA PF00004.24 gi|110669061|ref|YP_658872.1| - 4.3e-101 334.3 0.0 1.8e-49 167.2 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|110669061|ref|YP_658872.1| - 5.8e-29 99.8 0.1 2.9e-28 97.6 0.1 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.12 gi|110669061|ref|YP_658872.1| - 1.7e-15 56.3 0.0 8.1e-15 54.2 0.0 2.2 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.7 gi|110669061|ref|YP_658872.1| - 3.6e-15 55.6 0.0 5.4e-07 28.9 0.0 2.8 3 0 0 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|110669061|ref|YP_658872.1| - 7.2e-15 55.2 0.2 9.6e-05 22.5 0.1 4.4 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|110669061|ref|YP_658872.1| - 9.7e-15 55.0 0.0 4e-07 30.1 0.0 3.4 2 1 0 2 2 2 2 AAA ATPase domain AAA_5 PF07728.9 gi|110669061|ref|YP_658872.1| - 2.3e-14 53.2 0.5 5.8e-06 26.0 0.0 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|110669061|ref|YP_658872.1| - 8.9e-13 48.4 0.0 1.4e-05 25.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|110669061|ref|YP_658872.1| - 1.9e-12 48.0 0.1 0.00016 22.4 0.0 3.1 3 1 0 3 3 2 2 AAA domain TIP49 PF06068.8 gi|110669061|ref|YP_658872.1| - 1.1e-11 44.1 0.0 2.8e-05 23.0 0.0 3.0 3 0 0 3 3 3 2 TIP49 C-terminus AAA_33 PF13671.1 gi|110669061|ref|YP_658872.1| - 2.9e-11 43.4 0.0 8e-05 22.5 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_14 PF13173.1 gi|110669061|ref|YP_658872.1| - 3.8e-10 39.7 0.0 0.00026 20.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|110669061|ref|YP_658872.1| - 2.9e-09 36.5 4.3 0.0012 18.5 0.1 3.6 3 0 0 3 3 3 2 Part of AAA domain IstB_IS21 PF01695.12 gi|110669061|ref|YP_658872.1| - 6.9e-09 35.3 0.0 0.0041 16.5 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_25 PF13481.1 gi|110669061|ref|YP_658872.1| - 5.5e-08 32.4 5.6 0.94 8.8 0.1 4.4 2 2 1 4 4 4 3 AAA domain Zeta_toxin PF06414.7 gi|110669061|ref|YP_658872.1| - 5.6e-08 32.1 0.5 0.0045 16.0 0.0 2.9 3 0 0 3 3 2 2 Zeta toxin AAA_18 PF13238.1 gi|110669061|ref|YP_658872.1| - 6.4e-08 32.9 0.0 0.0073 16.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|110669061|ref|YP_658872.1| - 6.9e-07 28.6 0.1 0.038 13.1 0.0 2.7 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|110669061|ref|YP_658872.1| - 9.2e-07 28.9 0.2 0.014 15.3 0.0 2.7 3 0 0 3 3 2 2 AAA domain RNA_helicase PF00910.17 gi|110669061|ref|YP_658872.1| - 1.2e-06 28.6 0.0 0.057 13.5 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Sigma54_activat PF00158.21 gi|110669061|ref|YP_658872.1| - 2.9e-06 26.8 0.1 0.094 12.1 0.0 3.3 3 1 0 3 3 2 2 Sigma-54 interaction domain NB-ARC PF00931.17 gi|110669061|ref|YP_658872.1| - 4.4e-06 25.7 0.0 0.036 12.9 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain PhoH PF02562.11 gi|110669061|ref|YP_658872.1| - 6.9e-06 25.4 0.4 0.16 11.1 0.0 3.2 3 0 0 3 3 3 2 PhoH-like protein AAA_3 PF07726.6 gi|110669061|ref|YP_658872.1| - 1.1e-05 24.9 0.0 0.15 11.6 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) KaiC PF06745.8 gi|110669061|ref|YP_658872.1| - 1.3e-05 24.3 1.0 0.43 9.6 0.0 3.6 2 1 1 3 3 3 2 KaiC Arch_ATPase PF01637.13 gi|110669061|ref|YP_658872.1| - 1.4e-05 24.9 0.0 0.12 12.0 0.0 3.6 2 2 1 3 3 3 1 Archaeal ATPase ABC_tran PF00005.22 gi|110669061|ref|YP_658872.1| - 1.7e-05 25.1 0.0 0.39 11.0 0.0 2.9 2 0 0 2 2 2 2 ABC transporter Sigma54_activ_2 PF14532.1 gi|110669061|ref|YP_658872.1| - 1.7e-05 24.9 0.0 0.3 11.1 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain DUF815 PF05673.8 gi|110669061|ref|YP_658872.1| - 3.4e-05 22.8 0.0 0.3 9.9 0.0 2.6 2 1 0 2 2 2 2 Protein of unknown function (DUF815) DUF2075 PF09848.4 gi|110669061|ref|YP_658872.1| - 3.9e-05 22.8 0.0 0.25 10.2 0.0 2.6 3 0 0 3 3 2 2 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.1 gi|110669061|ref|YP_658872.1| - 4.6e-05 23.1 0.2 0.13 11.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain SKI PF01202.17 gi|110669061|ref|YP_658872.1| - 5.4e-05 23.1 0.0 0.28 11.0 0.0 2.5 2 0 0 2 2 2 2 Shikimate kinase NACHT PF05729.7 gi|110669061|ref|YP_658872.1| - 8.6e-05 22.2 0.1 0.26 10.9 0.0 3.5 4 0 0 4 4 4 1 NACHT domain AAA_11 PF13086.1 gi|110669061|ref|YP_658872.1| - 0.0001 22.0 0.0 0.51 9.8 0.0 2.4 2 1 0 2 2 2 2 AAA domain Parvo_NS1 PF01057.12 gi|110669061|ref|YP_658872.1| - 0.00016 20.6 0.1 0.2 10.4 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NTPase_1 PF03266.10 gi|110669061|ref|YP_658872.1| - 0.00027 20.7 0.6 1.8 8.2 0.0 3.7 3 1 1 4 4 3 2 NTPase AAA_30 PF13604.1 gi|110669061|ref|YP_658872.1| - 0.00037 20.1 0.8 0.89 9.0 0.0 3.1 3 0 0 3 3 2 2 AAA domain Bac_DnaA PF00308.13 gi|110669061|ref|YP_658872.1| - 0.0016 18.1 0.0 2.3 7.8 0.0 3.1 3 0 0 3 3 3 1 Bacterial dnaA protein ResIII PF04851.10 gi|110669061|ref|YP_658872.1| - 0.0016 18.2 0.0 2 8.2 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit IPT PF01745.11 gi|110669061|ref|YP_658872.1| - 0.003 16.7 0.8 0.97 8.5 0.0 2.8 3 0 0 3 3 3 1 Isopentenyl transferase UPF0079 PF02367.12 gi|110669061|ref|YP_658872.1| - 0.0031 17.1 0.1 1.6 8.3 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 ATP-synt_ab PF00006.20 gi|110669061|ref|YP_658872.1| - 0.0044 16.5 0.0 1.5 8.3 0.0 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain Cytidylate_kin2 PF13189.1 gi|110669061|ref|YP_658872.1| - 0.0052 16.6 0.0 1.3 8.8 0.0 2.3 2 0 0 2 2 2 1 Cytidylate kinase-like family KAP_NTPase PF07693.9 gi|110669061|ref|YP_658872.1| - 0.0068 15.4 0.1 2.8 6.8 0.0 3.3 2 2 0 3 3 3 1 KAP family P-loop domain T2SE PF00437.15 gi|110669061|ref|YP_658872.1| - 0.015 14.2 0.0 4.6 6.0 0.0 2.5 2 0 0 2 2 2 0 Type II/IV secretion system protein Torsin PF06309.6 gi|110669061|ref|YP_658872.1| - 0.016 15.1 0.0 3.8 7.4 0.0 2.7 3 0 0 3 3 2 0 Torsin CPT PF07931.7 gi|110669061|ref|YP_658872.1| - 0.019 14.5 0.0 3.1 7.3 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein KTI12 PF08433.5 gi|110669061|ref|YP_658872.1| - 0.021 14.0 0.0 11 5.1 0.0 3.0 3 0 0 3 3 3 0 Chromatin associated protein KTI12 Viral_helicase1 PF01443.13 gi|110669061|ref|YP_658872.1| - 0.04 13.4 0.0 3.5 7.0 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AFG1_ATPase PF03969.11 gi|110669061|ref|YP_658872.1| - 0.041 12.6 0.1 1.8 7.2 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase Guanylate_kin PF00625.16 gi|110669061|ref|YP_658872.1| - 0.058 12.8 0.2 36 3.7 0.0 3.5 2 1 1 3 3 3 0 Guanylate kinase PUA PF01472.15 gi|110669062|ref|YP_658873.1| - 5.9e-17 61.1 2.6 9.7e-17 60.4 1.8 1.4 1 0 0 1 1 1 1 PUA domain UL11 PF11094.3 gi|110669062|ref|YP_658873.1| - 0.86 9.4 3.4 0.9 9.4 0.1 2.6 3 0 0 3 3 3 0 Membrane-associated tegument protein DUF4638 PF15472.1 gi|110669063|ref|YP_658874.1| - 0.017 14.7 0.0 0.019 14.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4638) DUF2387 PF09526.5 gi|110669063|ref|YP_658874.1| - 0.062 13.2 0.2 0.12 12.2 0.1 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-B_box PF00643.19 gi|110669063|ref|YP_658874.1| - 0.26 11.2 2.2 1.1 9.2 0.5 2.2 2 0 0 2 2 2 0 B-box zinc finger DZR PF12773.2 gi|110669063|ref|YP_658874.1| - 1.3 8.8 4.5 6.5 6.6 3.1 2.2 1 1 0 1 1 1 0 Double zinc ribbon Tnp_zf-ribbon_2 PF13842.1 gi|110669063|ref|YP_658874.1| - 2.9 8.3 5.7 3.9 7.9 0.6 2.5 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon RNB PF00773.14 gi|110669064|ref|YP_658875.1| - 8.2e-81 271.7 0.4 1.4e-50 172.4 0.2 2.4 1 1 1 2 2 2 2 RNB domain DUF982 PF06169.7 gi|110669064|ref|YP_658875.1| - 0.023 14.4 0.0 0.051 13.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF982) FF PF01846.14 gi|110669064|ref|YP_658875.1| - 0.31 11.0 2.1 12 5.9 0.0 3.8 4 0 0 4 4 4 0 FF domain Prok-RING_1 PF14446.1 gi|110669065|ref|YP_658876.1| - 0.0067 16.1 0.6 0.012 15.3 0.4 1.4 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-P11 PF03854.9 gi|110669065|ref|YP_658876.1| - 0.14 11.6 0.2 0.2 11.1 0.2 1.4 1 0 0 1 1 1 0 P-11 zinc finger Peripla_BP_6 PF13458.1 gi|110669066|ref|YP_658877.1| - 1.4e-50 172.5 2.3 1.8e-50 172.2 1.6 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|110669066|ref|YP_658877.1| - 7.8e-19 67.6 0.5 3.4e-18 65.5 0.3 1.8 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|110669066|ref|YP_658877.1| - 6.4e-17 61.3 0.2 1.1e-16 60.5 0.1 1.3 1 1 0 1 1 1 1 Periplasmic binding protein domain UCR_Fe-S_N PF10399.4 gi|110669066|ref|YP_658877.1| - 0.053 12.7 0.2 0.18 11.0 0.2 2.0 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.4 gi|110669066|ref|YP_658877.1| - 0.22 11.6 9.0 1.6 8.8 6.2 2.4 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_2 PF02653.11 gi|110669067|ref|YP_658878.1| - 1.6e-40 138.7 42.6 1.9e-40 138.4 29.5 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|110669068|ref|YP_658879.1| - 1.4e-35 122.5 36.7 2e-35 122.0 25.5 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|110669069|ref|YP_658880.1| - 1.2e-28 100.1 0.0 1.7e-28 99.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110669069|ref|YP_658880.1| - 3.7e-12 46.8 1.8 5.4e-06 26.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|110669069|ref|YP_658880.1| - 2.5e-11 42.9 0.1 5.5e-11 41.8 0.1 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.1 gi|110669069|ref|YP_658880.1| - 7.2e-06 26.4 0.3 9.6e-06 26.0 0.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|110669069|ref|YP_658880.1| - 7.2e-05 22.2 0.0 0.00014 21.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|110669069|ref|YP_658880.1| - 8.9e-05 22.4 0.0 0.00018 21.4 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase SMC_N PF02463.14 gi|110669069|ref|YP_658880.1| - 0.00014 21.1 0.4 0.0022 17.2 0.3 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|110669069|ref|YP_658880.1| - 0.0008 18.5 0.2 0.3 10.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|110669069|ref|YP_658880.1| - 0.0015 17.7 0.0 0.0023 17.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 FeoB_N PF02421.13 gi|110669069|ref|YP_658880.1| - 0.0054 16.0 0.9 0.3 10.3 0.1 3.0 3 0 0 3 3 3 1 Ferrous iron transport protein B AAA_10 PF12846.2 gi|110669069|ref|YP_658880.1| - 0.0078 15.6 0.3 0.023 14.1 0.2 1.7 1 1 0 1 1 1 1 AAA-like domain AAA_16 PF13191.1 gi|110669069|ref|YP_658880.1| - 0.011 15.7 0.0 0.018 15.0 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain RNA_helicase PF00910.17 gi|110669069|ref|YP_658880.1| - 0.023 14.8 0.0 0.049 13.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase T2SE PF00437.15 gi|110669069|ref|YP_658880.1| - 0.024 13.5 0.1 0.091 11.6 0.0 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein Miff PF05644.6 gi|110669069|ref|YP_658880.1| - 0.042 13.4 0.0 0.071 12.7 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial and peroxisomal fission factor Mff Mg_chelatase PF01078.16 gi|110669069|ref|YP_658880.1| - 0.05 12.7 0.0 0.12 11.4 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_13 PF13166.1 gi|110669069|ref|YP_658880.1| - 0.069 11.6 0.0 0.41 9.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|110669069|ref|YP_658880.1| - 0.089 11.5 0.0 0.17 10.6 0.0 1.4 1 0 0 1 1 1 0 ArgK protein Arch_ATPase PF01637.13 gi|110669069|ref|YP_658880.1| - 0.11 12.1 0.0 0.47 10.1 0.0 1.9 2 1 1 3 3 3 0 Archaeal ATPase AAA_30 PF13604.1 gi|110669069|ref|YP_658880.1| - 0.13 11.8 0.0 0.51 9.8 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|110669069|ref|YP_658880.1| - 0.24 12.2 0.8 0.79 10.5 0.1 2.1 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|110669070|ref|YP_658881.1| - 1.1e-33 116.4 0.0 1.5e-33 115.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110669070|ref|YP_658881.1| - 1.1e-16 61.6 0.5 1e-07 32.2 0.1 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|110669070|ref|YP_658881.1| - 4.6e-06 26.0 0.4 5.6e-05 22.4 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|110669070|ref|YP_658881.1| - 3.8e-05 22.9 0.1 0.0041 16.2 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|110669070|ref|YP_658881.1| - 8.3e-05 22.0 0.0 0.00019 20.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|110669070|ref|YP_658881.1| - 0.0002 21.7 0.3 0.00035 20.9 0.2 1.3 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|110669070|ref|YP_658881.1| - 0.0004 19.6 0.0 0.00073 18.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|110669070|ref|YP_658881.1| - 0.0026 17.8 0.1 0.011 15.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|110669070|ref|YP_658881.1| - 0.003 17.7 0.0 0.08 13.1 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|110669070|ref|YP_658881.1| - 0.0034 16.8 0.6 0.0064 15.9 0.2 1.5 1 1 0 1 1 1 1 AAA-like domain AAA_16 PF13191.1 gi|110669070|ref|YP_658881.1| - 0.0055 16.7 0.0 0.0084 16.1 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|110669070|ref|YP_658881.1| - 0.0069 15.8 0.0 0.015 14.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|110669070|ref|YP_658881.1| - 0.017 15.0 0.0 0.036 13.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|110669070|ref|YP_658881.1| - 0.017 14.9 0.0 0.052 13.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|110669070|ref|YP_658881.1| - 0.018 15.8 0.1 0.031 15.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain MutS_V PF00488.16 gi|110669070|ref|YP_658881.1| - 0.019 14.3 0.0 0.034 13.5 0.0 1.3 1 0 0 1 1 1 0 MutS domain V AAA_5 PF07728.9 gi|110669070|ref|YP_658881.1| - 0.02 14.5 0.0 0.041 13.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|110669070|ref|YP_658881.1| - 0.021 14.4 0.1 0.061 12.9 0.0 1.8 2 0 0 2 2 2 0 NACHT domain ATP-synt_ab PF00006.20 gi|110669070|ref|YP_658881.1| - 0.022 14.2 0.0 0.026 14.0 0.0 1.1 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain MMR_HSR1 PF01926.18 gi|110669070|ref|YP_658881.1| - 0.048 13.6 0.0 0.067 13.1 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase NB-ARC PF00931.17 gi|110669070|ref|YP_658881.1| - 0.054 12.3 0.0 0.069 11.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain ATP_bind_1 PF03029.12 gi|110669070|ref|YP_658881.1| - 0.062 12.8 0.1 0.099 12.1 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein MobB PF03205.9 gi|110669070|ref|YP_658881.1| - 0.065 12.9 0.1 0.17 11.6 0.1 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.17 gi|110669070|ref|YP_658881.1| - 0.073 13.2 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_30 PF13604.1 gi|110669070|ref|YP_658881.1| - 0.086 12.4 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|110669070|ref|YP_658881.1| - 0.11 11.0 0.0 0.14 10.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|110669070|ref|YP_658881.1| - 0.11 11.9 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Adeno_IVa2 PF02456.10 gi|110669070|ref|YP_658881.1| - 0.16 10.6 0.0 0.22 10.1 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein ADH_N PF08240.7 gi|110669071|ref|YP_658882.1| - 8.7e-27 93.0 1.6 1.4e-26 92.3 0.7 1.6 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|110669071|ref|YP_658882.1| - 9.1e-11 41.4 0.2 1.7e-10 40.5 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_assoc PF13823.1 gi|110669071|ref|YP_658882.1| - 2.4e-08 33.4 0.5 6.2e-08 32.1 0.4 1.8 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated Methyltransf_18 PF12847.2 gi|110669071|ref|YP_658882.1| - 0.00045 20.7 0.0 0.0014 19.1 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Shikimate_DH PF01488.15 gi|110669071|ref|YP_658882.1| - 0.019 15.0 0.1 0.37 10.8 0.0 2.2 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase HI0933_like PF03486.9 gi|110669071|ref|YP_658882.1| - 0.052 12.0 0.1 0.2 10.0 0.1 1.8 2 0 0 2 2 2 0 HI0933-like protein zf-DBF PF07535.7 gi|110669071|ref|YP_658882.1| - 0.76 9.5 4.2 1.4 8.6 2.9 1.4 1 0 0 1 1 1 0 DBF zinc finger cobW PF02492.14 gi|110669073|ref|YP_658884.1| - 6.1e-49 165.8 0.0 8.2e-49 165.4 0.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.9 gi|110669073|ref|YP_658884.1| - 8.6e-24 83.0 0.0 1.8e-23 82.0 0.0 1.6 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain T2SE PF00437.15 gi|110669073|ref|YP_658884.1| - 0.00049 19.0 0.1 0.00076 18.4 0.1 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein GTP_EFTU PF00009.22 gi|110669073|ref|YP_658884.1| - 0.00095 18.6 0.0 0.49 9.7 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_22 PF13401.1 gi|110669073|ref|YP_658884.1| - 0.0017 18.5 0.0 0.0033 17.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|110669073|ref|YP_658884.1| - 0.0038 16.9 0.0 0.055 13.1 0.0 2.3 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|110669073|ref|YP_658884.1| - 0.0065 16.1 0.0 0.01 15.5 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase DUF258 PF03193.11 gi|110669073|ref|YP_658884.1| - 0.0075 15.4 0.0 0.014 14.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|110669073|ref|YP_658884.1| - 0.0084 15.5 0.0 0.014 14.8 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain UPF0079 PF02367.12 gi|110669073|ref|YP_658884.1| - 0.0087 15.6 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|110669073|ref|YP_658884.1| - 0.013 15.4 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|110669073|ref|YP_658884.1| - 0.014 15.1 0.1 0.034 13.8 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_16 PF13191.1 gi|110669073|ref|YP_658884.1| - 0.015 15.3 0.0 0.04 13.8 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain TrwB_AAD_bind PF10412.4 gi|110669073|ref|YP_658884.1| - 0.017 13.7 0.1 0.026 13.1 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain MMR_HSR1 PF01926.18 gi|110669073|ref|YP_658884.1| - 0.025 14.5 0.0 0.085 12.8 0.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC_tran PF00005.22 gi|110669073|ref|YP_658884.1| - 0.025 14.8 0.0 0.047 13.9 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_14 PF13173.1 gi|110669073|ref|YP_658884.1| - 0.03 14.2 0.0 0.063 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|110669073|ref|YP_658884.1| - 0.033 14.1 0.0 0.07 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|110669073|ref|YP_658884.1| - 0.034 14.9 0.1 0.088 13.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|110669073|ref|YP_658884.1| - 0.034 14.4 0.0 0.096 12.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|110669073|ref|YP_658884.1| - 0.042 12.9 0.0 0.074 12.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_29 PF13555.1 gi|110669073|ref|YP_658884.1| - 0.055 13.0 0.1 0.13 11.7 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Guanylate_kin PF00625.16 gi|110669073|ref|YP_658884.1| - 0.077 12.4 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Guanylate kinase AAA_23 PF13476.1 gi|110669073|ref|YP_658884.1| - 0.077 13.3 0.1 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain TFIIS_C PF01096.13 gi|110669074|ref|YP_658885.1| - 1e-15 57.0 3.2 1e-15 57.0 2.2 3.1 4 0 0 4 4 3 1 Transcription factor S-II (TFIIS) DZR PF12773.2 gi|110669074|ref|YP_658885.1| - 5.8e-08 32.4 9.9 1.1e-05 25.1 1.1 2.5 2 1 0 2 2 2 2 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|110669074|ref|YP_658885.1| - 1.5e-06 27.8 3.5 1.5e-06 27.8 2.4 3.0 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit UPF0547 PF10571.4 gi|110669074|ref|YP_658885.1| - 1.7e-06 27.5 2.7 0.0021 17.6 0.0 3.3 3 1 0 3 3 3 1 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|110669074|ref|YP_658885.1| - 9.2e-06 25.2 10.7 0.0011 18.5 1.2 2.9 2 1 0 2 2 2 2 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.8 gi|110669074|ref|YP_658885.1| - 0.00019 20.8 12.2 0.3 10.6 0.2 3.8 3 1 0 3 3 3 3 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.2 gi|110669074|ref|YP_658885.1| - 0.00067 19.4 0.6 0.00067 19.4 0.4 2.8 2 1 0 2 2 2 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|110669074|ref|YP_658885.1| - 0.0027 16.9 9.9 0.22 10.8 1.6 4.1 3 1 0 3 3 3 1 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|110669074|ref|YP_658885.1| - 0.0032 17.1 10.2 1.2 8.9 0.0 4.1 4 0 0 4 4 4 1 PhnA Zinc-Ribbon Prok-RING_1 PF14446.1 gi|110669074|ref|YP_658885.1| - 0.0073 16.0 10.0 0.16 11.6 1.1 3.1 3 0 0 3 3 3 2 Prokaryotic RING finger family 1 HypA PF01155.14 gi|110669074|ref|YP_658885.1| - 0.011 15.3 10.0 0.44 10.2 0.6 2.4 1 1 0 2 2 2 0 Hydrogenase expression/synthesis hypA family PHD PF00628.24 gi|110669074|ref|YP_658885.1| - 0.017 14.7 9.5 0.054 13.2 0.3 2.4 2 0 0 2 2 2 0 PHD-finger DUF2318 PF10080.4 gi|110669074|ref|YP_658885.1| - 0.022 14.5 10.3 0.77 9.5 0.0 2.9 1 1 2 3 3 3 0 Predicted membrane protein (DUF2318) C1_1 PF00130.17 gi|110669074|ref|YP_658885.1| - 0.027 14.1 8.6 0.65 9.7 1.9 2.6 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Auto_anti-p27 PF06677.7 gi|110669074|ref|YP_658885.1| - 0.033 13.9 3.2 0.033 13.9 2.2 2.8 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Nudix_N_2 PF14803.1 gi|110669074|ref|YP_658885.1| - 0.14 11.8 10.9 1.2 8.8 2.4 3.9 3 1 0 3 3 3 0 Nudix N-terminal zinc-ribbons_6 PF07191.7 gi|110669074|ref|YP_658885.1| - 0.24 11.2 8.8 0.26 11.1 0.7 2.6 2 1 0 2 2 2 0 zinc-ribbons zf-ribbon_3 PF13248.1 gi|110669074|ref|YP_658885.1| - 0.29 10.3 11.5 0.67 9.2 2.3 3.7 3 1 1 4 4 4 0 zinc-ribbon domain DCR PF14047.1 gi|110669074|ref|YP_658885.1| - 1 9.6 0.2 1 9.6 0.1 2.5 2 1 0 3 3 2 0 Dppa2/4 conserved region PHF5 PF03660.9 gi|110669074|ref|YP_658885.1| - 1.1 9.2 6.6 0.89 9.6 0.6 2.2 1 1 0 2 2 2 0 PHF5-like protein zf-C3HC4_3 PF13920.1 gi|110669074|ref|YP_658885.1| - 1.4 8.6 6.0 9.9 5.9 1.1 3.0 3 0 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) DUF2039 PF10217.4 gi|110669074|ref|YP_658885.1| - 1.5 8.9 6.8 0.79 9.7 0.2 2.2 1 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2039) RRN7 PF11781.3 gi|110669074|ref|YP_658885.1| - 2.4 7.7 13.8 4 7.0 0.0 4.1 3 1 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 GFA PF04828.9 gi|110669074|ref|YP_658885.1| - 2.4 8.1 11.5 5.4 7.0 0.5 3.5 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme DUF2197 PF09963.4 gi|110669074|ref|YP_658885.1| - 2.5 8.1 8.5 22 5.0 0.0 3.3 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2197) ADK_lid PF05191.9 gi|110669074|ref|YP_658885.1| - 3.3 7.4 13.2 5.3 6.7 0.1 4.0 3 1 0 4 4 4 0 Adenylate kinase, active site lid FYVE PF01363.16 gi|110669074|ref|YP_658885.1| - 3.6 7.5 8.1 18 5.2 5.6 2.1 1 1 0 1 1 1 0 FYVE zinc finger IBR PF01485.16 gi|110669074|ref|YP_658885.1| - 4.2 7.3 12.7 21 5.0 1.3 3.2 2 1 0 2 2 2 0 IBR domain DUF2387 PF09526.5 gi|110669074|ref|YP_658885.1| - 4.8 7.1 10.7 0.55 10.1 1.2 2.8 1 1 2 3 3 3 0 Probable metal-binding protein (DUF2387) Cytochrom_CIII PF02085.11 gi|110669074|ref|YP_658885.1| - 5.6 7.1 7.1 7 6.8 0.5 2.3 1 1 0 1 1 1 0 Class III cytochrome C family Lar_restr_allev PF14354.1 gi|110669074|ref|YP_658885.1| - 9.7 6.5 13.5 1.4e+04 -3.6 9.3 3.4 1 1 0 1 1 0 0 Restriction alleviation protein Lar GHMP_kinases_N PF00288.21 gi|110669075|ref|YP_658886.1| - 9.4e-07 28.8 0.2 1.8e-06 27.9 0.1 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|110669075|ref|YP_658886.1| - 0.0084 16.2 0.0 0.019 15.1 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal Keratin PF02422.11 gi|110669075|ref|YP_658886.1| - 0.17 11.8 3.8 0.53 10.2 2.6 1.9 1 1 0 1 1 1 0 Keratin Cupin_2 PF07883.6 gi|110669076|ref|YP_658887.1| - 1.3e-11 43.7 0.3 1.9e-11 43.2 0.2 1.2 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.13 gi|110669076|ref|YP_658887.1| - 0.0024 17.4 0.0 0.0029 17.2 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase DUF1637 PF07847.7 gi|110669076|ref|YP_658887.1| - 0.025 13.9 0.0 0.034 13.5 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1637) Cupin_3 PF05899.7 gi|110669076|ref|YP_658887.1| - 0.14 11.5 0.1 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) TrkA_N PF02254.13 gi|110669077|ref|YP_658888.1| - 1.9e-05 24.6 0.2 2.3e-05 24.3 0.1 1.2 1 0 0 1 1 1 1 TrkA-N domain GMP_synt_C PF00958.17 gi|110669078|ref|YP_658889.1| - 1.2e-29 101.8 0.1 2.8e-29 100.6 0.0 1.6 2 0 0 2 2 2 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|110669078|ref|YP_658889.1| - 9.6e-09 34.4 0.1 7.4e-08 31.5 0.1 2.0 1 1 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|110669078|ref|YP_658889.1| - 1.5e-05 23.7 0.0 0.0006 18.4 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|110669078|ref|YP_658889.1| - 0.00097 18.6 0.0 0.0043 16.5 0.0 1.9 2 0 0 2 2 2 1 Asparagine synthase PAPS_reduct PF01507.14 gi|110669078|ref|YP_658889.1| - 0.0054 16.5 0.0 0.0092 15.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.8 gi|110669078|ref|YP_658889.1| - 0.021 14.1 0.0 0.06 12.6 0.0 1.7 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|110669078|ref|YP_658889.1| - 0.024 14.0 0.0 0.057 12.8 0.0 1.7 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) CTP_synth_N PF06418.9 gi|110669079|ref|YP_658890.1| - 1.7e-126 420.9 0.2 2.5e-126 420.3 0.1 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|110669079|ref|YP_658890.1| - 5.5e-47 159.7 0.0 9.9e-47 158.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|110669079|ref|YP_658890.1| - 1.2e-08 34.6 0.0 3.4e-08 33.1 0.0 1.8 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|110669079|ref|YP_658890.1| - 1.3e-07 31.2 0.0 2.8e-07 30.1 0.0 1.6 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF3186 PF11382.3 gi|110669079|ref|YP_658890.1| - 0.095 11.8 0.3 0.18 10.9 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3186) Glyco_hydro_3_C PF01915.17 gi|110669079|ref|YP_658890.1| - 0.12 11.8 0.1 1.9 7.9 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolase family 3 C-terminal domain DUF2892 PF11127.3 gi|110669080|ref|YP_658891.1| - 8.4e-10 38.3 1.5 1.2e-09 37.8 1.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) SpoVAB PF13782.1 gi|110669080|ref|YP_658891.1| - 0.023 14.6 0.4 0.026 14.4 0.3 1.2 1 0 0 1 1 1 0 Stage V sporulation protein AB PEPcase PF00311.12 gi|110669081|ref|YP_658892.1| - 1.1e-241 804.1 0.0 1.4e-241 803.6 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.1 gi|110669081|ref|YP_658892.1| - 0.00053 18.4 0.0 0.00096 17.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase AlkA_N PF06029.6 gi|110669081|ref|YP_658892.1| - 0.00065 19.7 1.0 0.21 11.6 0.1 2.7 2 0 0 2 2 2 2 AlkA N-terminal domain Rieske PF00355.21 gi|110669082|ref|YP_658893.1| - 6.1e-08 32.1 0.1 1.1e-07 31.2 0.1 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain ThiS PF02597.15 gi|110669083|ref|YP_658894.1| - 5.1e-15 55.6 0.1 7.1e-15 55.2 0.0 1.2 1 0 0 1 1 1 1 ThiS family STN PF07660.9 gi|110669083|ref|YP_658894.1| - 0.046 13.2 0.0 0.074 12.6 0.0 1.4 1 0 0 1 1 1 0 Secretin and TonB N terminus short domain Ub-Mut7C PF14451.1 gi|110669083|ref|YP_658894.1| - 0.097 12.1 0.1 0.72 9.4 0.0 2.2 2 1 0 2 2 2 0 Mut7-C ubiquitin Usp PF00582.21 gi|110669084|ref|YP_658895.1| - 5.3e-07 29.9 1.1 0.05 13.7 0.0 3.7 2 2 0 2 2 2 2 Universal stress protein family HPP PF04982.8 gi|110669084|ref|YP_658895.1| - 2.6e-06 27.2 3.5 4.7e-06 26.4 2.4 1.4 1 0 0 1 1 1 1 HPP family GnHR_trans PF12369.3 gi|110669084|ref|YP_658895.1| - 2.1 8.8 4.9 1.3 9.5 1.9 1.8 2 0 0 2 2 2 0 Gonadotropin hormone receptor transmembrane region Invasin_D3 PF09134.5 gi|110669084|ref|YP_658895.1| - 3.3 7.6 6.8 9.1 6.2 0.1 3.6 3 1 1 4 4 4 0 Invasin, domain 3 PNP_UDP_1 PF01048.15 gi|110669085|ref|YP_658896.1| - 7.8e-46 155.9 5.2 8.6e-46 155.7 3.6 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily GFO_IDH_MocA PF01408.17 gi|110669086|ref|YP_658897.1| - 5.3e-13 49.5 0.5 1.8e-12 47.8 0.3 1.9 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|110669086|ref|YP_658897.1| - 2.2e-08 33.8 0.0 4.9e-08 32.7 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Sulfatase PF00884.18 gi|110669087|ref|YP_658898.1| - 1.1e-35 123.3 0.3 1.5e-35 122.8 0.2 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|110669087|ref|YP_658898.1| - 1.2e-12 47.8 1.5 3.2e-11 43.1 1.0 2.3 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|110669087|ref|YP_658898.1| - 1.1e-05 24.0 0.0 2.7e-05 22.8 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF229) DUF1501 PF07394.7 gi|110669087|ref|YP_658898.1| - 0.024 13.5 0.0 0.041 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1501) HTH_1 PF00126.22 gi|110669087|ref|YP_658898.1| - 0.078 12.7 0.5 0.22 11.2 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF63 PF01889.12 gi|110669088|ref|YP_658899.1| - 1.7e-17 64.4 13.3 2.2e-17 64.0 9.2 1.1 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DeoC PF01791.4 gi|110669089|ref|YP_658900.1| - 1.2e-34 119.7 3.3 1.3e-34 119.5 2.3 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase His_biosynth PF00977.16 gi|110669089|ref|YP_658900.1| - 0.0078 15.4 0.3 0.028 13.6 0.0 1.9 2 0 0 2 2 2 1 Histidine biosynthesis protein Cation_efflux PF01545.16 gi|110669090|ref|YP_658901.1| - 1.7e-56 191.3 1.8 2e-56 191.2 1.3 1.0 1 0 0 1 1 1 1 Cation efflux family HIT PF01230.18 gi|110669091|ref|YP_658902.1| - 2.9e-10 40.5 0.0 7.6e-10 39.2 0.0 1.7 2 0 0 2 2 2 1 HIT domain CwfJ_C_1 PF04677.10 gi|110669091|ref|YP_658902.1| - 0.00088 18.9 0.0 0.0014 18.2 0.0 1.4 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.3 gi|110669091|ref|YP_658902.1| - 0.0047 17.1 0.0 0.013 15.7 0.0 1.7 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding Peptidase_M24 PF00557.19 gi|110669092|ref|YP_658903.1| - 1.4e-45 155.3 0.7 1.8e-45 155.0 0.5 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Metallophos PF00149.23 gi|110669093|ref|YP_658904.1| - 1.8e-13 50.3 0.8 1e-12 47.9 0.6 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|110669093|ref|YP_658904.1| - 9.4e-10 38.5 0.0 1.3e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|110669093|ref|YP_658904.1| - 0.003 16.7 0.0 0.0042 16.2 0.0 1.2 1 0 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily Shisa PF13908.1 gi|110669094|ref|YP_658905.1| - 7.7e-05 22.9 1.4 7.7e-05 22.9 0.9 1.4 2 0 0 2 2 2 1 Wnt and FGF inhibitory regulator Gag_spuma PF03276.9 gi|110669094|ref|YP_658905.1| - 0.00011 20.6 1.2 0.00011 20.6 0.8 1.1 1 0 0 1 1 1 1 Spumavirus gag protein DUF1183 PF06682.7 gi|110669094|ref|YP_658905.1| - 0.00097 18.8 0.8 0.0013 18.4 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1183) Zip PF02535.17 gi|110669094|ref|YP_658905.1| - 0.015 14.3 0.5 0.039 12.9 0.0 1.7 1 1 1 2 2 2 0 ZIP Zinc transporter Peroxin-13_N PF04088.8 gi|110669094|ref|YP_658905.1| - 0.085 12.8 0.1 0.17 11.8 0.0 1.5 1 1 0 1 1 1 0 Peroxin 13, N-terminal region Ndc1_Nup PF09531.5 gi|110669094|ref|YP_658905.1| - 0.22 9.9 4.2 0.26 9.6 2.9 1.3 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup Herpes_DNAp_acc PF04929.7 gi|110669094|ref|YP_658905.1| - 0.32 9.9 4.3 0.35 9.7 3.0 1.1 1 0 0 1 1 1 0 Herpes DNA replication accessory factor DUF3592 PF12158.3 gi|110669094|ref|YP_658905.1| - 0.74 9.6 4.7 0.43 10.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3592) PepSY_TM PF03929.11 gi|110669094|ref|YP_658905.1| - 5.2 7.6 8.0 1.7 9.2 1.5 2.4 2 0 0 2 2 2 0 PepSY-associated TM helix DSBA PF01323.15 gi|110669095|ref|YP_658906.1| - 7e-25 87.7 0.1 9.1e-25 87.3 0.1 1.2 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_2 PF13098.1 gi|110669095|ref|YP_658906.1| - 7.6e-07 29.3 0.4 0.0001 22.4 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like domain Thioredoxin_4 PF13462.1 gi|110669095|ref|YP_658906.1| - 0.00016 21.7 2.2 0.0057 16.6 1.5 2.1 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_5 PF13743.1 gi|110669095|ref|YP_658906.1| - 0.062 12.8 0.8 1.2 8.7 0.0 2.5 2 1 1 3 3 3 0 Thioredoxin Iso_dh PF00180.15 gi|110669096|ref|YP_658907.1| - 9e-107 357.0 0.0 4.2e-106 354.8 0.0 1.8 1 1 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DUF2314 PF10077.4 gi|110669096|ref|YP_658907.1| - 0.079 13.0 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2314) DUF2088 PF09861.4 gi|110669097|ref|YP_658908.1| - 1e-08 34.4 0.2 1.8e-08 33.6 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) DUF362 PF04015.7 gi|110669097|ref|YP_658908.1| - 0.11 11.9 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF362) zf-Di19 PF05605.7 gi|110669098|ref|YP_658909.1| - 0.034 14.2 0.0 0.064 13.3 0.0 1.5 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Zn-ribbon_8 PF09723.5 gi|110669098|ref|YP_658909.1| - 0.053 13.4 0.8 0.11 12.4 0.5 1.5 1 0 0 1 1 1 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|110669098|ref|YP_658909.1| - 0.12 11.7 0.2 0.25 10.6 0.1 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|110669098|ref|YP_658909.1| - 0.13 11.4 2.1 0.82 8.9 1.6 2.0 1 1 1 2 2 2 0 zinc-ribbon domain DUF2072 PF09845.4 gi|110669098|ref|YP_658909.1| - 0.15 11.9 0.3 0.24 11.3 0.2 1.5 1 1 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) HypA PF01155.14 gi|110669098|ref|YP_658909.1| - 0.15 11.7 0.5 0.25 11.0 0.3 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family OrfB_Zn_ribbon PF07282.6 gi|110669098|ref|YP_658909.1| - 0.18 11.4 1.4 0.28 10.8 0.1 2.0 3 0 0 3 3 3 0 Putative transposase DNA-binding domain zinc_ribbon_5 PF13719.1 gi|110669098|ref|YP_658909.1| - 0.23 11.0 2.2 0.88 9.2 1.5 1.9 1 1 0 1 1 1 0 zinc-ribbon domain FYDLN_acid PF09538.5 gi|110669098|ref|YP_658909.1| - 0.32 11.6 3.5 0.67 10.5 2.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zinc_ribbon_4 PF13717.1 gi|110669098|ref|YP_658909.1| - 1.1 9.0 3.7 10 5.9 2.6 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-RING_3 PF14369.1 gi|110669098|ref|YP_658909.1| - 5.6 7.0 7.3 0.3 11.1 1.2 1.7 2 0 0 2 2 2 0 zinc-finger HMG-CoA_red PF00368.13 gi|110669099|ref|YP_658910.1| - 6.7e-137 456.0 8.9 7.8e-137 455.8 6.2 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DUF1522 PF07482.6 gi|110669099|ref|YP_658910.1| - 5.8 7.1 11.8 2.9 8.0 1.6 3.3 2 2 1 3 3 3 0 Domain of Unknown Function (DUF1522) NadA PF02445.11 gi|110669100|ref|YP_658911.1| - 1.3e-100 336.0 0.0 1.5e-100 335.8 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein FAD_binding_2 PF00890.19 gi|110669101|ref|YP_658912.1| - 9.6e-77 258.5 4.7 1.2e-76 258.2 3.3 1.1 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|110669101|ref|YP_658912.1| - 1.3e-09 37.4 0.4 1.3e-09 37.4 0.3 2.4 2 1 1 3 3 3 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|110669101|ref|YP_658912.1| - 4.3e-09 36.5 3.9 9.5e-08 32.1 2.7 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|110669101|ref|YP_658912.1| - 6.4e-08 31.8 0.8 2.3e-06 26.7 0.6 2.3 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|110669101|ref|YP_658912.1| - 9.9e-07 28.1 7.6 1.4e-06 27.6 4.7 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|110669101|ref|YP_658912.1| - 1.7e-06 26.7 0.2 0.0012 17.3 0.1 2.3 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|110669101|ref|YP_658912.1| - 0.00011 22.1 0.2 0.00035 20.5 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|110669101|ref|YP_658912.1| - 0.00019 20.6 0.0 0.00027 20.1 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|110669101|ref|YP_658912.1| - 0.00046 20.5 0.1 0.0021 18.4 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Succ_DH_flav_C PF02910.15 gi|110669101|ref|YP_658912.1| - 0.00052 19.8 0.2 0.00094 19.0 0.1 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term AlaDh_PNT_C PF01262.16 gi|110669101|ref|YP_658912.1| - 0.00085 18.9 0.1 0.0015 18.1 0.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|110669101|ref|YP_658912.1| - 0.0025 18.0 0.1 0.005 17.0 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Lycopene_cycl PF05834.7 gi|110669101|ref|YP_658912.1| - 0.045 12.6 0.6 0.075 11.9 0.4 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein 3HCDH_N PF02737.13 gi|110669101|ref|YP_658912.1| - 0.064 12.9 0.2 0.12 11.9 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|110669101|ref|YP_658912.1| - 0.091 12.2 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Thi4 PF01946.12 gi|110669101|ref|YP_658912.1| - 0.32 10.0 2.5 0.75 8.8 0.5 2.3 2 1 1 3 3 3 0 Thi4 family OMPdecase PF00215.19 gi|110669102|ref|YP_658913.1| - 4.4e-33 114.5 0.0 5.3e-33 114.2 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF2859 PF11072.3 gi|110669102|ref|YP_658913.1| - 0.069 12.6 0.0 0.16 11.3 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2859) zf-C2HC5 PF06221.8 gi|110669103|ref|YP_658914.1| - 0.0089 15.7 1.7 0.013 15.2 1.2 1.2 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type DUF1889 PF08986.5 gi|110669103|ref|YP_658914.1| - 0.049 13.8 0.0 0.05 13.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1889) zf-AN1 PF01428.11 gi|110669103|ref|YP_658914.1| - 0.12 12.3 4.2 0.22 11.4 2.9 1.6 1 1 0 1 1 1 0 AN1-like Zinc finger DUF2180 PF09947.4 gi|110669103|ref|YP_658914.1| - 0.13 11.9 8.5 1.5 8.6 5.9 2.1 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2180) FYVE PF01363.16 gi|110669103|ref|YP_658914.1| - 2.4 8.1 7.7 11 6.0 5.3 1.9 1 1 0 1 1 1 0 FYVE zinc finger Glutaredoxin PF00462.19 gi|110669104|ref|YP_658915.1| - 4.9e-14 52.0 0.0 6.2e-14 51.7 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.1 gi|110669104|ref|YP_658915.1| - 5.2e-12 45.8 0.0 5.5e-12 45.7 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|110669104|ref|YP_658915.1| - 1.5e-08 34.5 0.0 1.6e-08 34.3 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.15 gi|110669104|ref|YP_658915.1| - 0.0003 20.9 0.0 0.00036 20.6 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|110669104|ref|YP_658915.1| - 0.0017 18.6 0.0 0.0018 18.4 0.0 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_3 PF13192.1 gi|110669104|ref|YP_658915.1| - 0.12 12.2 0.0 0.17 11.7 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin domain Thioredoxin_2 PF13098.1 gi|110669104|ref|YP_658915.1| - 0.13 12.4 0.0 0.18 12.0 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin-like domain PLDc_2 PF13091.1 gi|110669105|ref|YP_658916.1| - 7.3e-07 28.9 0.0 1.5e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 PLD-like domain Tyr-DNA_phospho PF06087.7 gi|110669105|ref|YP_658916.1| - 0.00075 18.2 0.0 0.0011 17.6 0.0 1.2 1 0 0 1 1 1 1 Tyrosyl-DNA phosphodiesterase RE_NgoFVII PF09565.5 gi|110669105|ref|YP_658916.1| - 0.0048 15.8 0.0 0.011 14.7 0.0 1.5 1 0 0 1 1 1 1 NgoFVII restriction endonuclease DDE_5 PF13546.1 gi|110669106|ref|YP_658917.1| - 8.1e-08 31.4 0.0 9.7e-08 31.1 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease Sod_Fe_N PF00081.17 gi|110669106|ref|YP_658917.1| - 0.12 12.6 0.0 0.48 10.7 0.0 1.8 2 0 0 2 2 2 0 Iron/manganese superoxide dismutases, alpha-hairpin domain DUF457 PF04307.9 gi|110669107|ref|YP_658918.1| - 1.5e-09 37.3 7.7 1.9e-09 37.0 5.4 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Arylsulfotrans PF05935.6 gi|110669108|ref|YP_658919.1| - 1.5e-12 46.7 4.8 4.6e-12 45.1 1.5 2.1 1 1 0 2 2 2 1 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.1 gi|110669108|ref|YP_658919.1| - 1.2e-06 27.9 0.6 0.00014 21.1 0.3 3.2 3 1 0 3 3 3 1 Arylsulfotransferase (ASST) DUF1236 PF06823.7 gi|110669108|ref|YP_658919.1| - 0.46 10.2 2.2 28 4.5 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1236) NHL PF01436.16 gi|110669108|ref|YP_658919.1| - 6.7 6.8 6.4 8.3 6.5 0.0 3.9 5 0 0 5 5 5 0 NHL repeat Xan_ur_permease PF00860.15 gi|110669109|ref|YP_658920.1| - 1.4e-30 106.1 43.2 2e-30 105.5 30.0 1.2 1 0 0 1 1 1 1 Permease family Pribosyltran PF00156.22 gi|110669110|ref|YP_658921.1| - 4.5e-11 42.5 0.1 7.4e-11 41.8 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.17 gi|110669110|ref|YP_658921.1| - 0.041 13.7 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix DUF2017 PF09438.5 gi|110669110|ref|YP_658921.1| - 0.061 12.9 0.1 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2017) Pribosyltran PF00156.22 gi|110669111|ref|YP_658922.1| - 2e-10 40.4 3.9 7.6e-10 38.5 2.7 2.0 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|110669111|ref|YP_658922.1| - 1.9e-05 23.9 0.3 2.8e-05 23.4 0.2 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|110669111|ref|YP_658922.1| - 0.013 14.8 0.6 0.024 13.9 0.4 1.5 1 0 0 1 1 1 0 Phosphoribosyl transferase DUF46 PF01864.12 gi|110669112|ref|YP_658923.1| - 5.9e-44 150.0 3.7 7.4e-44 149.6 2.5 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|110669112|ref|YP_658923.1| - 6.8e-05 22.6 0.8 6.8e-05 22.6 0.6 2.0 2 0 0 2 2 2 1 Cytidylyltransferase family Gly-zipper_YMGG PF13441.1 gi|110669112|ref|YP_658923.1| - 9 5.9 11.4 0.8 9.2 0.1 2.8 3 0 0 3 3 3 0 YMGG-like Gly-zipper DUF502 PF04367.8 gi|110669113|ref|YP_658924.1| - 2.8e-20 72.1 0.4 5.8e-20 71.0 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF502) Colicin_V PF02674.11 gi|110669113|ref|YP_658924.1| - 0.0024 17.7 3.0 0.0036 17.1 2.1 1.2 1 0 0 1 1 1 1 Colicin V production protein OrfB_Zn_ribbon PF07282.6 gi|110669115|ref|YP_658926.1| - 1e-18 66.7 0.2 1.9e-18 65.8 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Aminotran_4 PF01063.14 gi|110669116|ref|YP_658927.1| - 3.8e-47 160.7 0.0 4.4e-47 160.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV RNA_pol_Rpb5_N PF03871.9 gi|110669116|ref|YP_658927.1| - 0.027 14.8 0.1 0.049 14.0 0.1 1.4 1 0 0 1 1 1 0 RNA polymerase Rpb5, N-terminal domain DHBP_synthase PF00926.14 gi|110669117|ref|YP_658928.1| - 2.2e-55 186.9 0.4 2.5e-55 186.7 0.3 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CTP-dep_RFKase PF01982.11 gi|110669118|ref|YP_658929.1| - 4.7e-45 152.1 0.0 6.8e-45 151.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_24 PF13412.1 gi|110669118|ref|YP_658929.1| - 1.6e-06 27.3 0.0 2.8e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|110669118|ref|YP_658929.1| - 4.2e-06 26.3 0.1 8e-06 25.4 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|110669118|ref|YP_658929.1| - 5.3e-06 26.3 0.0 0.00012 21.9 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|110669118|ref|YP_658929.1| - 6.6e-06 25.8 0.1 1.5e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|110669118|ref|YP_658929.1| - 1.7e-05 25.0 0.1 3.4e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|110669118|ref|YP_658929.1| - 8.8e-05 22.1 0.0 0.00018 21.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|110669118|ref|YP_658929.1| - 0.00021 20.8 0.0 0.00042 19.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.1 gi|110669118|ref|YP_658929.1| - 0.00039 19.8 0.3 0.00078 18.9 0.2 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.14 gi|110669118|ref|YP_658929.1| - 0.0017 18.2 0.0 0.0031 17.4 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|110669118|ref|YP_658929.1| - 0.0044 16.5 0.1 0.0082 15.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.7 gi|110669118|ref|YP_658929.1| - 0.021 14.3 0.0 0.039 13.5 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_1 PF00126.22 gi|110669118|ref|YP_658929.1| - 0.076 12.7 0.0 0.36 10.6 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family OrfB_IS605 PF01385.14 gi|110669119|ref|YP_658930.1| - 2.5e-24 85.9 1.2 2.5e-24 85.9 0.8 2.3 1 1 1 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|110669119|ref|YP_658930.1| - 2.6e-20 71.8 0.9 5.5e-20 70.7 0.1 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain Zn_Tnp_IS91 PF14319.1 gi|110669119|ref|YP_658930.1| - 0.12 11.9 0.5 0.3 10.5 0.3 1.6 1 0 0 1 1 1 0 Transposase zinc-binding domain BNIP2 PF12496.3 gi|110669119|ref|YP_658930.1| - 0.18 11.9 3.8 2.1 8.5 0.2 2.7 2 1 0 2 2 2 0 Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2 Antitoxin-MazE PF04014.13 gi|110669120|ref|YP_658931.1| - 7.9e-08 31.8 0.2 8.7e-08 31.7 0.1 1.1 1 0 0 1 1 1 1 Antidote-toxin recognition MazE tRNA-synt_1d PF00750.14 gi|110669121|ref|YP_658932.1| - 2.5e-58 197.5 0.1 1.4e-57 195.1 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|110669121|ref|YP_658932.1| - 1.7e-30 105.4 0.2 1.2e-29 102.7 0.0 2.2 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|110669121|ref|YP_658932.1| - 1.3e-09 38.4 0.0 3.9e-09 36.9 0.0 1.8 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|110669121|ref|YP_658932.1| - 0.0089 14.7 0.0 0.16 10.5 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) eRF1_2 PF03464.10 gi|110669122|ref|YP_658933.1| - 6.2e-37 126.8 0.0 1.5e-36 125.6 0.0 1.7 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|110669122|ref|YP_658933.1| - 1.5e-27 96.1 0.1 4e-27 94.7 0.0 1.8 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|110669122|ref|YP_658933.1| - 2.7e-25 88.4 0.0 4.4e-25 87.7 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 Zn-ribbon_8 PF09723.5 gi|110669122|ref|YP_658933.1| - 0.00014 21.7 1.9 0.00035 20.4 1.3 1.7 1 0 0 1 1 1 1 Zinc ribbon domain ATP-synt_D PF01813.12 gi|110669123|ref|YP_658934.1| - 1e-60 204.6 10.9 1.2e-60 204.4 7.5 1.0 1 0 0 1 1 1 1 ATP synthase subunit D DUF948 PF06103.6 gi|110669123|ref|YP_658934.1| - 0.14 12.0 1.4 3.7 7.4 0.1 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Ribosomal_S13 PF00416.17 gi|110669123|ref|YP_658934.1| - 1.1 9.7 4.9 1.3 9.5 0.8 2.4 2 0 0 2 2 2 0 Ribosomal protein S13/S18 ATP-synt_ab PF00006.20 gi|110669124|ref|YP_658935.1| - 1.1e-58 198.2 0.0 1.5e-58 197.8 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|110669124|ref|YP_658935.1| - 5.6e-18 65.4 0.1 1.1e-17 64.4 0.1 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|110669124|ref|YP_658935.1| - 1.7e-12 47.3 0.6 3.9e-12 46.2 0.4 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|110669124|ref|YP_658935.1| - 0.00057 19.7 0.9 0.002 17.9 0.7 2.0 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_ab PF00006.20 gi|110669125|ref|YP_658936.1| - 1.9e-93 311.9 0.0 2.9e-93 311.2 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|110669125|ref|YP_658936.1| - 9e-19 68.0 0.5 2e-18 66.9 0.3 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|110669125|ref|YP_658936.1| - 3.6e-12 46.3 3.4 3.6e-12 46.3 2.3 2.1 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain DUF1932 PF09130.6 gi|110669125|ref|YP_658936.1| - 0.18 11.5 1.7 1.7 8.4 0.4 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1932) ATP-synt_F PF01990.12 gi|110669126|ref|YP_658937.1| - 7.6e-19 67.8 0.1 9.1e-19 67.6 0.0 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit vATP-synt_AC39 PF01992.11 gi|110669127|ref|YP_658938.1| - 6.9e-95 317.9 6.7 7.8e-95 317.8 4.6 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit DUF2981 PF11200.3 gi|110669127|ref|YP_658938.1| - 0.1 11.6 0.0 0.27 10.2 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2981) vATP-synt_E PF01991.13 gi|110669128|ref|YP_658939.1| - 1.8e-42 144.8 13.0 2.4e-42 144.4 9.0 1.1 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit HrpE PF06188.7 gi|110669128|ref|YP_658939.1| - 0.00021 21.1 8.6 0.00032 20.5 6.0 1.2 1 0 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E ATP-synt_B PF00430.13 gi|110669128|ref|YP_658939.1| - 0.0031 17.3 20.8 0.013 15.3 14.5 1.9 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) Fmp27_WPPW PF10359.4 gi|110669128|ref|YP_658939.1| - 0.0071 14.8 4.6 0.0079 14.6 3.2 1.2 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain DUF3552 PF12072.3 gi|110669128|ref|YP_658939.1| - 0.084 12.0 23.7 0.18 11.0 16.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) AAA_13 PF13166.1 gi|110669128|ref|YP_658939.1| - 0.16 10.4 9.9 0.19 10.1 6.9 1.1 1 0 0 1 1 1 0 AAA domain DUF2317 PF10079.4 gi|110669128|ref|YP_658939.1| - 0.19 10.3 6.8 0.27 9.8 4.7 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2317) HlyD PF00529.15 gi|110669128|ref|YP_658939.1| - 0.75 9.0 12.3 1 8.5 8.5 1.2 1 0 0 1 1 1 0 HlyD family secretion protein DivIVA PF05103.8 gi|110669128|ref|YP_658939.1| - 0.79 9.7 17.0 15 5.6 11.5 2.4 1 1 1 2 2 2 0 DivIVA protein Peptidase_M41 PF01434.13 gi|110669128|ref|YP_658939.1| - 0.94 8.9 5.8 0.77 9.1 2.4 1.9 1 1 1 2 2 2 0 Peptidase family M41 HXXSHH PF07586.6 gi|110669128|ref|YP_658939.1| - 0.97 8.2 3.7 0.71 8.7 1.1 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1552) Rgp1 PF08737.5 gi|110669128|ref|YP_658939.1| - 1.5 7.8 3.9 1.9 7.4 2.7 1.1 1 0 0 1 1 1 0 Rgp1 zf-C4H2 PF10146.4 gi|110669128|ref|YP_658939.1| - 2.2 8.2 11.7 2.7 7.9 8.1 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein Aldedh PF00171.17 gi|110669128|ref|YP_658939.1| - 3.4 5.9 5.3 4 5.6 3.4 1.4 1 1 0 1 1 1 0 Aldehyde dehydrogenase family FUSC PF04632.7 gi|110669128|ref|YP_658939.1| - 6.2 5.1 6.1 6.9 4.9 4.2 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family Terminase_2 PF03592.11 gi|110669128|ref|YP_658939.1| - 7.6 6.8 13.9 8.4 6.6 7.8 2.1 1 1 1 2 2 2 0 Terminase small subunit ATP-synt_C PF00137.16 gi|110669129|ref|YP_658940.1| - 1.3e-13 50.5 12.5 1.6e-13 50.3 8.7 1.1 1 0 0 1 1 1 1 ATP synthase subunit C V_ATPase_I PF01496.14 gi|110669130|ref|YP_658941.1| - 5.5e-64 216.3 38.5 9e-32 109.8 13.7 5.4 3 2 0 3 3 3 3 V-type ATPase 116kDa subunit family BBS2_C PF14782.1 gi|110669130|ref|YP_658941.1| - 0.0011 17.5 0.7 0.04 12.4 0.1 2.2 2 0 0 2 2 2 1 Ciliary BBSome complex subunit 2, C-terminal DUF4140 PF13600.1 gi|110669130|ref|YP_658941.1| - 0.038 14.4 5.9 1.8 9.0 0.4 2.4 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DASH_Dad3 PF08656.5 gi|110669130|ref|YP_658941.1| - 0.064 12.9 0.3 0.18 11.5 0.2 1.7 1 0 0 1 1 1 0 DASH complex subunit Dad3 DUF4600 PF15372.1 gi|110669130|ref|YP_658941.1| - 0.19 11.9 3.7 1 9.5 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4600) DegS PF05384.6 gi|110669130|ref|YP_658941.1| - 0.47 9.6 3.8 1.3 8.2 0.3 2.2 2 0 0 2 2 2 0 Sensor protein DegS ALIX_LYPXL_bnd PF13949.1 gi|110669130|ref|YP_658941.1| - 0.6 9.0 7.8 3.3 6.5 0.5 2.1 2 0 0 2 2 2 0 ALIX V-shaped domain binding to HIV TBPIP PF07106.8 gi|110669130|ref|YP_658941.1| - 0.83 9.1 2.9 5.6 6.4 0.3 2.1 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Prefoldin_2 PF01920.15 gi|110669130|ref|YP_658941.1| - 0.99 9.1 8.7 2.5 7.9 0.7 3.0 3 0 0 3 3 3 0 Prefoldin subunit Seryl_tRNA_N PF02403.17 gi|110669130|ref|YP_658941.1| - 2.4 8.2 6.1 9.2 6.3 0.5 2.3 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Enkurin PF13864.1 gi|110669130|ref|YP_658941.1| - 5.6 7.2 6.5 25 5.1 0.6 2.3 2 0 0 2 2 2 0 Calmodulin-binding DUF1192 PF06698.6 gi|110669130|ref|YP_658941.1| - 6.6 6.6 9.8 3.2 7.6 1.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) TPD52 PF04201.10 gi|110669130|ref|YP_658941.1| - 9 5.9 9.5 2.1 8.0 1.1 2.3 2 0 0 2 2 2 0 Tumour protein D52 family KfrA_N PF11740.3 gi|110669130|ref|YP_658941.1| - 9.5 6.6 11.3 3.7 8.0 0.5 2.5 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term DivIC PF04977.10 gi|110669130|ref|YP_658941.1| - 9.8 5.7 7.4 4.2 6.9 0.4 2.5 2 0 0 2 2 2 0 Septum formation initiator ATP-synt_B PF00430.13 gi|110669131|ref|YP_658942.1| - 2.9e-06 27.1 27.3 0.0017 18.1 4.1 2.5 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) DUF3552 PF12072.3 gi|110669131|ref|YP_658942.1| - 0.00016 20.9 26.7 0.00039 19.6 13.3 2.0 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) HrpE PF06188.7 gi|110669131|ref|YP_658942.1| - 0.021 14.5 13.1 0.039 13.7 9.1 1.5 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E DUF883 PF05957.8 gi|110669131|ref|YP_658942.1| - 0.078 13.3 15.2 1.2 9.5 4.8 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) V-ATPase_G PF03179.10 gi|110669131|ref|YP_658942.1| - 0.29 11.4 27.3 7.7 6.8 18.9 2.4 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit PP_kinase_N PF13089.1 gi|110669131|ref|YP_658942.1| - 0.55 10.3 5.9 0.23 11.5 1.3 1.9 1 1 1 2 2 2 0 Polyphosphate kinase N-terminal domain DUF445 PF04286.7 gi|110669131|ref|YP_658942.1| - 0.97 8.8 8.6 1.2 8.6 5.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF445) Phage_GPO PF05929.6 gi|110669131|ref|YP_658942.1| - 1 8.5 8.2 1.1 8.4 5.7 1.1 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF4102 PF13356.1 gi|110669131|ref|YP_658942.1| - 1.3 8.9 11.9 1.2 9.0 2.3 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4102) DivIVA PF05103.8 gi|110669131|ref|YP_658942.1| - 1.4 9.0 18.2 3.9 7.5 7.2 2.1 1 1 1 2 2 2 0 DivIVA protein Caudo_TAP PF02413.12 gi|110669131|ref|YP_658942.1| - 1.4 9.0 15.9 4.6 7.4 6.5 2.6 1 1 2 3 3 3 0 Caudovirales tail fibre assembly protein Muted PF14942.1 gi|110669131|ref|YP_658942.1| - 1.6 8.6 13.2 2.7 7.8 9.1 1.4 1 1 0 1 1 1 0 Organelle biogenesis, Muted-like protein Mnd1 PF03962.10 gi|110669131|ref|YP_658942.1| - 3.6 7.2 12.0 4.6 6.8 8.3 1.2 1 0 0 1 1 1 0 Mnd1 family Med8 PF10232.4 gi|110669131|ref|YP_658942.1| - 4 6.8 11.4 4.4 6.7 7.9 1.1 1 0 0 1 1 1 0 Mediator of RNA polymerase II transcription complex subunit 8 DUF2252 PF10009.4 gi|110669131|ref|YP_658942.1| - 4.1 6.1 7.9 4.7 5.9 5.5 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2252) LUC7 PF03194.10 gi|110669131|ref|YP_658942.1| - 4.2 6.8 12.0 5 6.5 8.3 1.1 1 0 0 1 1 1 0 LUC7 N_terminus KfrA_N PF11740.3 gi|110669131|ref|YP_658942.1| - 4.7 7.6 25.0 1.1 9.7 9.1 2.3 1 1 1 2 2 2 0 Plasmid replication region DNA-binding N-term DUF3135 PF11333.3 gi|110669131|ref|YP_658942.1| - 5.2 7.3 6.1 3.2 7.9 0.9 2.4 1 1 1 3 3 3 0 Protein of unknown function (DUF3135) Atg14 PF10186.4 gi|110669131|ref|YP_658942.1| - 7.6 5.3 9.1 11 4.9 6.3 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 HAUS6_N PF14661.1 gi|110669131|ref|YP_658942.1| - 8.2 5.6 11.0 11 5.3 7.6 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus Sds3 PF08598.6 gi|110669131|ref|YP_658942.1| - 8.5 5.8 13.3 11 5.4 9.2 1.3 1 0 0 1 1 1 0 Sds3-like ISG65-75 PF11727.3 gi|110669131|ref|YP_658942.1| - 8.6 5.3 13.9 11 4.9 8.7 1.7 1 1 0 1 1 1 0 Invariant surface glycoprotein Methyltransf_11 PF08241.7 gi|110669132|ref|YP_658943.1| - 2.9e-22 78.9 0.0 5.3e-22 78.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|110669132|ref|YP_658943.1| - 1e-16 61.1 0.0 1.3e-16 60.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|110669132|ref|YP_658943.1| - 6.1e-16 58.3 0.0 7.8e-16 58.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|110669132|ref|YP_658943.1| - 2.9e-14 52.7 0.0 4.1e-11 42.4 0.0 2.1 1 1 1 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|110669132|ref|YP_658943.1| - 2.4e-13 50.3 0.0 4.1e-13 49.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|110669132|ref|YP_658943.1| - 3.3e-12 46.7 0.0 5.1e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|110669132|ref|YP_658943.1| - 7.5e-11 42.5 0.0 1.2e-10 41.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|110669132|ref|YP_658943.1| - 1.1e-08 35.0 0.0 2e-08 34.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|110669132|ref|YP_658943.1| - 6.5e-06 25.3 0.0 8.3e-06 25.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MetW PF07021.7 gi|110669132|ref|YP_658943.1| - 3.8e-05 23.1 0.0 5.3e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.14 gi|110669132|ref|YP_658943.1| - 0.00012 21.6 0.0 0.00051 19.6 0.0 2.0 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|110669132|ref|YP_658943.1| - 0.00021 20.4 0.0 0.00035 19.7 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|110669132|ref|YP_658943.1| - 0.00066 19.0 0.0 0.001 18.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_9 PF08003.6 gi|110669132|ref|YP_658943.1| - 0.0022 16.7 0.0 0.0025 16.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) NodS PF05401.6 gi|110669132|ref|YP_658943.1| - 0.0033 16.8 0.0 0.0043 16.4 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_29 PF03141.11 gi|110669132|ref|YP_658943.1| - 0.014 13.8 0.0 0.016 13.5 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase ADPrib_exo_Tox PF03496.9 gi|110669132|ref|YP_658943.1| - 0.02 14.1 0.0 0.058 12.5 0.0 1.7 2 0 0 2 2 2 0 ADP-ribosyltransferase exoenzyme Methyltransf_2 PF00891.13 gi|110669132|ref|YP_658943.1| - 0.039 13.1 0.0 0.062 12.4 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_32 PF13679.1 gi|110669132|ref|YP_658943.1| - 0.13 11.9 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF1628 PF07790.6 gi|110669133|ref|YP_658944.1| - 0.8 10.5 3.8 3.4 8.4 2.6 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1628) polyprenyl_synt PF00348.12 gi|110669136|ref|YP_658947.1| - 1.8e-53 181.0 0.2 2.3e-53 180.7 0.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase DUF373 PF04123.8 gi|110669137|ref|YP_658948.1| - 1.5e-117 392.4 8.9 1.8e-117 392.2 6.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) MARVEL PF01284.18 gi|110669137|ref|YP_658948.1| - 0.24 11.1 10.3 5.8 6.7 0.4 2.3 1 1 1 2 2 2 0 Membrane-associating domain Radical_SAM PF04055.16 gi|110669138|ref|YP_658949.1| - 5.7e-05 23.3 0.0 0.0077 16.4 0.0 2.2 2 0 0 2 2 2 2 Radical SAM superfamily Fer4_14 PF13394.1 gi|110669138|ref|YP_658949.1| - 0.001 19.0 0.0 0.0019 18.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|110669138|ref|YP_658949.1| - 0.0018 18.4 0.0 0.0037 17.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF4134 PF13572.1 gi|110669139|ref|YP_658950.1| - 0.0074 16.3 0.1 0.0074 16.3 0.1 2.5 2 1 0 2 2 2 1 Domain of unknown function (DUF4134) DUF3955 PF13127.1 gi|110669139|ref|YP_658950.1| - 0.1 12.1 0.3 0.1 12.1 0.2 4.0 4 0 0 4 4 4 0 Protein of unknown function (DUF3955) DUF1705 PF08019.7 gi|110669139|ref|YP_658950.1| - 0.27 10.7 2.3 0.53 9.7 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1705) TRAM PF01938.15 gi|110669140|ref|YP_658951.1| - 2.4e-08 33.6 0.2 3.4e-08 33.1 0.1 1.3 1 0 0 1 1 1 1 TRAM domain TRAP_alpha PF03896.11 gi|110669140|ref|YP_658951.1| - 0.044 12.7 0.9 0.061 12.3 0.6 1.2 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit Metaviral_G PF09595.5 gi|110669140|ref|YP_658951.1| - 0.13 11.9 2.4 0.17 11.4 1.7 1.1 1 0 0 1 1 1 0 Metaviral_G glycoprotein TFX_C PF14601.1 gi|110669141|ref|YP_658952.1| - 2.6e-32 110.4 0.0 3.9e-32 109.8 0.0 1.3 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.11 gi|110669141|ref|YP_658952.1| - 4.7e-05 22.6 0.5 7.7e-05 21.9 0.4 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.14 gi|110669141|ref|YP_658952.1| - 5.2e-05 22.4 0.5 0.00013 21.2 0.1 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family RepB PF07506.6 gi|110669141|ref|YP_658952.1| - 0.00072 19.4 0.1 0.0012 18.7 0.1 1.4 1 0 0 1 1 1 1 RepB plasmid partitioning protein Sigma70_r4_2 PF08281.7 gi|110669141|ref|YP_658952.1| - 0.0023 17.3 0.2 0.0061 16.0 0.1 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 KorB PF08535.5 gi|110669141|ref|YP_658952.1| - 0.0045 17.1 0.2 4 7.6 0.0 2.4 1 1 1 2 2 2 2 KorB domain HTH_7 PF02796.10 gi|110669141|ref|YP_658952.1| - 0.0052 16.6 0.1 0.014 15.2 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|110669141|ref|YP_658952.1| - 0.0058 16.2 0.2 0.014 15.0 0.2 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_3 PF01381.17 gi|110669141|ref|YP_658952.1| - 0.027 14.3 0.1 0.06 13.2 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_37 PF13744.1 gi|110669141|ref|YP_658952.1| - 0.029 14.1 0.0 0.058 13.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_31 PF13560.1 gi|110669141|ref|YP_658952.1| - 0.038 14.1 1.8 0.092 12.9 1.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_19 PF12844.2 gi|110669141|ref|YP_658952.1| - 0.092 12.8 0.0 0.27 11.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain TPP_enzyme_C PF02775.16 gi|110669141|ref|YP_658952.1| - 0.35 10.4 2.3 2.5 7.6 0.1 2.6 1 1 2 3 3 3 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NTP_transferase PF00483.18 gi|110669142|ref|YP_658953.1| - 3.5e-39 134.6 0.0 1.9e-38 132.1 0.0 1.9 2 0 0 2 2 2 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|110669142|ref|YP_658953.1| - 1.8e-10 41.0 0.6 2.6e-09 37.3 0.0 2.3 2 0 0 2 2 2 1 MobA-like NTP transferase domain MannoseP_isomer PF01050.13 gi|110669142|ref|YP_658953.1| - 1.1e-05 25.1 0.2 0.0017 17.9 0.0 2.4 2 0 0 2 2 2 2 Mannose-6-phosphate isomerase CRA PF06589.6 gi|110669142|ref|YP_658953.1| - 0.087 12.1 1.0 0.16 11.2 0.0 1.9 2 0 0 2 2 2 0 Circumsporozoite-related antigen (CRA) NYAP_C PF15452.1 gi|110669143|ref|YP_658954.1| - 0.0052 15.8 0.8 0.006 15.6 0.6 1.0 1 0 0 1 1 1 1 Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter tRNA_anti-codon PF01336.20 gi|110669144|ref|YP_658955.1| - 0.00086 19.1 0.2 0.009 15.8 0.0 2.4 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain PqqD PF05402.7 gi|110669144|ref|YP_658955.1| - 0.048 13.6 3.6 0.057 13.4 0.8 2.5 2 1 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) RHH_1 PF01402.16 gi|110669146|ref|YP_658957.1| - 1.6e-06 27.7 0.3 7.2e-06 25.6 0.1 2.3 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF3562 PF12085.3 gi|110669146|ref|YP_658957.1| - 0.0063 16.3 0.3 0.024 14.4 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3562) RHH_3 PF12651.2 gi|110669146|ref|YP_658957.1| - 0.0099 15.5 0.1 0.018 14.7 0.1 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix domain HicB PF05534.7 gi|110669146|ref|YP_658957.1| - 0.062 12.8 0.5 0.34 10.5 0.0 2.0 2 0 0 2 2 2 0 HicB family Glutaredoxin2_C PF04399.8 gi|110669146|ref|YP_658957.1| - 0.086 12.4 1.5 0.46 10.0 0.5 1.9 2 0 0 2 2 2 0 Glutaredoxin 2, C terminal domain Topoisom_I PF01028.15 gi|110669146|ref|YP_658957.1| - 0.09 11.8 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Eukaryotic DNA topoisomerase I, catalytic core Sec2p PF06428.6 gi|110669146|ref|YP_658957.1| - 0.15 11.9 6.7 0.32 10.8 4.7 1.7 1 1 0 1 1 1 0 GDP/GTP exchange factor Sec2p Spc24 PF08286.6 gi|110669146|ref|YP_658957.1| - 0.18 11.4 3.2 0.31 10.7 2.2 1.4 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 Condensation PF00668.15 gi|110669146|ref|YP_658957.1| - 0.25 10.1 3.0 0.74 8.6 0.0 2.0 2 0 0 2 2 2 0 Condensation domain IncA PF04156.9 gi|110669146|ref|YP_658957.1| - 3.7 7.1 8.3 4.5 6.8 5.7 1.5 1 1 0 1 1 1 0 IncA protein Phage_integrase PF00589.17 gi|110669148|ref|YP_658959.1| - 1.7e-16 60.4 0.3 3.5e-16 59.3 0.2 1.5 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|110669148|ref|YP_658959.1| - 0.0028 17.9 2.4 0.0073 16.6 0.5 2.5 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain DUF2454 PF10521.4 gi|110669148|ref|YP_658959.1| - 0.078 11.9 0.5 0.12 11.4 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2454) GerPC PF10737.4 gi|110669148|ref|YP_658959.1| - 0.092 12.5 2.3 0.42 10.3 1.1 2.2 2 0 0 2 2 2 0 Spore germination protein GerPC AAA_22 PF13401.1 gi|110669149|ref|YP_658960.1| - 2.8e-15 56.6 0.0 6.6e-15 55.4 0.0 1.5 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|110669149|ref|YP_658960.1| - 3.9e-14 53.0 0.0 5.9e-13 49.2 0.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain Bac_DnaA PF00308.13 gi|110669149|ref|YP_658960.1| - 1.4e-06 28.0 0.0 0.0001 22.0 0.0 2.1 2 0 0 2 2 2 1 Bacterial dnaA protein Arch_ATPase PF01637.13 gi|110669149|ref|YP_658960.1| - 1.8e-06 27.8 0.0 6.6e-06 25.9 0.0 1.8 1 1 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|110669149|ref|YP_658960.1| - 5.5e-05 23.3 0.0 0.00011 22.3 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|110669149|ref|YP_658960.1| - 6e-05 22.7 0.0 8.2e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 NACHT domain AAA_14 PF13173.1 gi|110669149|ref|YP_658960.1| - 0.00024 21.0 0.0 0.00041 20.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|110669149|ref|YP_658960.1| - 0.00037 20.2 0.0 0.00078 19.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|110669149|ref|YP_658960.1| - 0.00073 19.0 0.0 0.0016 17.9 0.0 1.5 2 0 0 2 2 2 1 Sigma-54 interaction domain NB-ARC PF00931.17 gi|110669149|ref|YP_658960.1| - 0.0053 15.6 0.0 0.0073 15.1 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AFG1_ATPase PF03969.11 gi|110669149|ref|YP_658960.1| - 0.0062 15.3 0.0 0.012 14.4 0.0 1.4 1 1 0 1 1 1 1 AFG1-like ATPase Viral_helicase1 PF01443.13 gi|110669149|ref|YP_658960.1| - 0.0078 15.7 0.0 0.011 15.3 0.0 1.2 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_17 PF13207.1 gi|110669149|ref|YP_658960.1| - 0.01 16.6 0.1 0.018 15.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|110669149|ref|YP_658960.1| - 0.01 15.5 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 0 NTPase AAA_19 PF13245.1 gi|110669149|ref|YP_658960.1| - 0.013 15.2 0.0 0.033 13.9 0.0 1.7 2 0 0 2 2 1 0 Part of AAA domain DUF815 PF05673.8 gi|110669149|ref|YP_658960.1| - 0.016 14.1 0.0 0.045 12.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF815) RNA_helicase PF00910.17 gi|110669149|ref|YP_658960.1| - 0.021 15.0 0.0 0.05 13.7 0.0 1.7 1 0 0 1 1 1 0 RNA helicase ATP_bind_1 PF03029.12 gi|110669149|ref|YP_658960.1| - 0.021 14.3 0.0 0.039 13.5 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein TrwB_AAD_bind PF10412.4 gi|110669149|ref|YP_658960.1| - 0.024 13.2 0.0 0.036 12.7 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Zeta_toxin PF06414.7 gi|110669149|ref|YP_658960.1| - 0.051 12.6 0.0 0.1 11.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin FtsK_SpoIIIE PF01580.13 gi|110669149|ref|YP_658960.1| - 0.063 12.7 0.0 0.28 10.6 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family RuvB_N PF05496.7 gi|110669149|ref|YP_658960.1| - 0.08 11.9 0.0 0.24 10.3 0.0 1.8 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_33 PF13671.1 gi|110669149|ref|YP_658960.1| - 0.084 12.7 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|110669149|ref|YP_658960.1| - 0.09 12.2 0.0 2.9 7.3 0.0 2.1 2 0 0 2 2 2 0 DEAD/DEAH box helicase T2SE PF00437.15 gi|110669149|ref|YP_658960.1| - 0.099 11.5 0.0 0.17 10.7 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.1 gi|110669149|ref|YP_658960.1| - 0.1 12.1 0.0 0.2 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|110669149|ref|YP_658960.1| - 0.12 12.0 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF2075 PF09848.4 gi|110669149|ref|YP_658960.1| - 0.12 11.3 0.0 0.12 11.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ABC_tran PF00005.22 gi|110669149|ref|YP_658960.1| - 0.15 12.3 0.0 0.25 11.6 0.0 1.4 1 1 0 1 1 1 0 ABC transporter IstB_IS21 PF01695.12 gi|110669149|ref|YP_658960.1| - 0.17 11.3 0.0 0.3 10.4 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein Cdc6_C PF09079.6 gi|110669150|ref|YP_658961.1| - 8.2e-16 57.5 1.5 4.4e-14 51.9 0.1 2.4 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|110669150|ref|YP_658961.1| - 6e-13 49.0 2.7 8.7e-13 48.5 0.2 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|110669150|ref|YP_658961.1| - 7.9e-12 45.5 2.2 4.3e-11 43.1 1.5 2.5 1 1 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|110669150|ref|YP_658961.1| - 6.3e-09 35.8 0.0 1.8e-08 34.3 0.0 1.9 1 1 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|110669150|ref|YP_658961.1| - 9.7e-08 32.2 0.0 2.4e-07 31.0 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|110669150|ref|YP_658961.1| - 7.3e-07 29.1 0.0 2.1e-06 27.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|110669150|ref|YP_658961.1| - 2.6e-06 26.5 0.1 4.5e-06 25.7 0.1 1.4 1 0 0 1 1 1 1 NB-ARC domain DEAD PF00270.24 gi|110669150|ref|YP_658961.1| - 4.2e-05 23.0 0.1 0.0033 16.9 0.0 2.5 1 1 1 2 2 2 1 DEAD/DEAH box helicase DUF2075 PF09848.4 gi|110669150|ref|YP_658961.1| - 0.00016 20.8 0.6 0.00022 20.3 0.0 1.5 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) NACHT PF05729.7 gi|110669150|ref|YP_658961.1| - 0.00017 21.3 0.1 0.00032 20.3 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_33 PF13671.1 gi|110669150|ref|YP_658961.1| - 0.00021 21.1 2.6 0.0005 19.9 0.1 2.4 1 1 1 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|110669150|ref|YP_658961.1| - 0.00035 19.7 0.0 0.00074 18.7 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|110669150|ref|YP_658961.1| - 0.0004 20.5 0.0 0.00096 19.3 0.0 1.7 1 0 0 1 1 1 1 RNA helicase AAA_5 PF07728.9 gi|110669150|ref|YP_658961.1| - 0.0008 19.1 0.1 0.0029 17.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|110669150|ref|YP_658961.1| - 0.0017 17.8 0.0 0.47 9.8 0.0 3.0 2 1 0 3 3 3 1 AAA-like domain AAA_30 PF13604.1 gi|110669150|ref|YP_658961.1| - 0.0038 16.8 0.0 0.011 15.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|110669150|ref|YP_658961.1| - 0.004 16.0 0.1 0.012 14.5 0.1 1.6 1 1 0 1 1 1 1 Type II/IV secretion system protein RFX_DNA_binding PF02257.10 gi|110669150|ref|YP_658961.1| - 0.0047 17.0 0.3 0.04 14.0 0.1 2.5 2 1 0 2 2 2 1 RFX DNA-binding domain TIP49 PF06068.8 gi|110669150|ref|YP_658961.1| - 0.0054 15.5 0.0 0.99 8.0 0.0 2.2 2 0 0 2 2 2 1 TIP49 C-terminus IstB_IS21 PF01695.12 gi|110669150|ref|YP_658961.1| - 0.0063 15.9 0.3 0.091 12.1 0.2 2.4 1 1 0 1 1 1 1 IstB-like ATP binding protein DUF258 PF03193.11 gi|110669150|ref|YP_658961.1| - 0.0067 15.6 0.1 0.014 14.5 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 RNA12 PF10443.4 gi|110669150|ref|YP_658961.1| - 0.0072 14.8 0.0 0.014 13.8 0.0 1.5 1 0 0 1 1 1 1 RNA12 protein AAA_11 PF13086.1 gi|110669150|ref|YP_658961.1| - 0.0079 15.7 5.6 0.023 14.2 3.8 1.8 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|110669150|ref|YP_658961.1| - 0.012 15.9 1.9 0.52 10.6 1.3 2.6 1 1 0 1 1 1 0 ABC transporter AAA_19 PF13245.1 gi|110669150|ref|YP_658961.1| - 0.017 14.8 0.2 0.25 11.1 0.0 2.8 3 0 0 3 3 3 0 Part of AAA domain AAA_17 PF13207.1 gi|110669150|ref|YP_658961.1| - 0.028 15.2 0.0 0.08 13.7 0.0 1.9 2 0 0 2 2 1 0 AAA domain Sigma54_activat PF00158.21 gi|110669150|ref|YP_658961.1| - 0.029 13.8 0.0 0.069 12.6 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain DUF815 PF05673.8 gi|110669150|ref|YP_658961.1| - 0.035 13.0 0.0 0.079 11.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) UPF0079 PF02367.12 gi|110669150|ref|YP_658961.1| - 0.046 13.3 0.0 0.097 12.3 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ResIII PF04851.10 gi|110669150|ref|YP_658961.1| - 0.05 13.4 2.3 0.08 12.7 0.0 2.4 2 2 1 3 3 3 0 Type III restriction enzyme, res subunit Sigma54_activ_2 PF14532.1 gi|110669150|ref|YP_658961.1| - 0.05 13.6 0.8 0.36 10.8 0.1 2.6 2 1 0 2 2 2 0 Sigma-54 interaction domain AAA_18 PF13238.1 gi|110669150|ref|YP_658961.1| - 0.058 13.7 0.0 0.1 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|110669150|ref|YP_658961.1| - 0.1 11.7 0.0 0.31 10.2 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein FlxA PF14282.1 gi|110669151|ref|YP_658962.1| - 0.12 12.3 0.5 0.27 11.2 0.0 1.7 2 0 0 2 2 2 0 FlxA-like protein IncA PF04156.9 gi|110669151|ref|YP_658962.1| - 0.2 11.2 17.4 0.32 10.5 12.0 1.4 1 0 0 1 1 1 0 IncA protein AAA_32 PF13654.1 gi|110669151|ref|YP_658962.1| - 0.22 10.1 5.9 0.25 9.9 4.1 1.1 1 0 0 1 1 1 0 AAA domain ING PF12998.2 gi|110669151|ref|YP_658962.1| - 0.84 9.9 7.9 6.9 6.9 5.4 2.4 1 1 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding Herpes_UL25 PF01499.11 gi|110669151|ref|YP_658962.1| - 5.9 5.0 7.8 0.93 7.7 2.7 1.6 1 1 1 2 2 2 0 Herpesvirus UL25 family IFP_35_N PF07334.8 gi|110669151|ref|YP_658962.1| - 7.8 6.5 16.6 4.3 7.3 2.5 3.3 1 1 1 3 3 3 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus Phage_integrase PF00589.17 gi|110669152|ref|YP_658963.1| - 1.6e-10 40.8 0.0 3.2e-10 39.9 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family DZR PF12773.2 gi|110669152|ref|YP_658963.1| - 0.0015 18.3 4.7 0.016 14.9 0.8 2.4 2 0 0 2 2 2 1 Double zinc ribbon Phage_int_SAM_4 PF13495.1 gi|110669152|ref|YP_658963.1| - 0.0017 18.6 0.6 1.2 9.5 0.0 3.3 4 0 0 4 4 4 1 Phage integrase, N-terminal SAM-like domain zf-ribbon_3 PF13248.1 gi|110669152|ref|YP_658963.1| - 0.014 14.6 1.6 0.014 14.6 1.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain Phage_int_SAM_1 PF02899.12 gi|110669152|ref|YP_658963.1| - 0.015 15.4 1.1 0.49 10.5 0.1 3.0 2 2 2 4 4 4 0 Phage integrase, N-terminal SAM-like domain zinc_ribbon_2 PF13240.1 gi|110669152|ref|YP_658963.1| - 0.028 13.8 2.6 0.028 13.8 1.8 2.5 2 0 0 2 2 2 0 zinc-ribbon domain FdhE PF04216.7 gi|110669152|ref|YP_658963.1| - 0.096 12.3 2.8 0.28 10.8 0.8 2.1 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation AAA_10 PF12846.2 gi|110669153|ref|YP_658964.1| - 2.9e-15 56.5 0.0 6.8e-15 55.2 0.0 1.7 2 0 0 2 2 2 1 AAA-like domain TrwB_AAD_bind PF10412.4 gi|110669153|ref|YP_658964.1| - 2.7e-05 22.9 0.0 0.0076 14.9 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_17 PF13207.1 gi|110669153|ref|YP_658964.1| - 6.3e-05 23.7 0.2 0.00077 20.2 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|110669153|ref|YP_658964.1| - 6.8e-05 22.7 0.1 0.0065 16.3 0.0 2.9 3 0 0 3 3 3 1 AAA domain DUF87 PF01935.12 gi|110669153|ref|YP_658964.1| - 0.00017 21.5 0.0 0.00048 20.0 0.0 1.9 2 1 0 2 2 1 1 Domain of unknown function DUF87 AAA_16 PF13191.1 gi|110669153|ref|YP_658964.1| - 0.00018 21.5 0.0 0.00042 20.3 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain FtsK_SpoIIIE PF01580.13 gi|110669153|ref|YP_658964.1| - 0.00028 20.4 0.0 0.00057 19.4 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|110669153|ref|YP_658964.1| - 0.00063 19.8 0.0 0.0027 17.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|110669153|ref|YP_658964.1| - 0.0013 18.4 0.0 0.0035 17.0 0.0 1.7 2 0 0 2 2 1 1 NACHT domain ABC_tran PF00005.22 gi|110669153|ref|YP_658964.1| - 0.0015 18.7 0.0 0.004 17.4 0.0 1.6 1 0 0 1 1 1 1 ABC transporter Zeta_toxin PF06414.7 gi|110669153|ref|YP_658964.1| - 0.0051 15.9 0.0 0.048 12.7 0.0 2.3 2 0 0 2 2 2 1 Zeta toxin Miro PF08477.8 gi|110669153|ref|YP_658964.1| - 0.0086 16.5 0.0 0.022 15.2 0.0 1.7 1 0 0 1 1 1 1 Miro-like protein AAA_25 PF13481.1 gi|110669153|ref|YP_658964.1| - 0.011 15.2 0.0 0.072 12.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|110669153|ref|YP_658964.1| - 0.012 15.3 0.0 0.023 14.3 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.1 gi|110669153|ref|YP_658964.1| - 0.012 15.1 0.1 0.026 14.0 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|110669153|ref|YP_658964.1| - 0.014 14.5 0.0 0.027 13.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_32 PF13654.1 gi|110669153|ref|YP_658964.1| - 0.018 13.7 0.0 4.1 5.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|110669153|ref|YP_658964.1| - 0.018 15.3 0.0 0.051 13.8 0.0 1.9 1 0 0 1 1 1 0 AAA domain Pox_A32 PF04665.7 gi|110669153|ref|YP_658964.1| - 0.03 13.5 0.0 0.057 12.7 0.0 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein AAA PF00004.24 gi|110669153|ref|YP_658964.1| - 0.031 14.4 0.0 0.23 11.6 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) T2SE PF00437.15 gi|110669153|ref|YP_658964.1| - 0.032 13.1 0.0 0.053 12.4 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Septin PF00735.13 gi|110669153|ref|YP_658964.1| - 0.054 12.5 0.1 0.16 10.9 0.0 1.7 2 0 0 2 2 2 0 Septin cobW PF02492.14 gi|110669153|ref|YP_658964.1| - 0.058 12.8 0.0 0.097 12.1 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_5 PF07728.9 gi|110669153|ref|YP_658964.1| - 0.061 13.0 0.0 0.15 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) PduV-EutP PF10662.4 gi|110669153|ref|YP_658964.1| - 0.073 12.5 0.1 0.12 11.8 0.1 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_14 PF13173.1 gi|110669153|ref|YP_658964.1| - 0.076 12.9 0.0 0.36 10.7 0.0 2.1 2 0 0 2 2 1 0 AAA domain AAA_24 PF13479.1 gi|110669153|ref|YP_658964.1| - 0.15 11.6 0.0 0.35 10.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain Dynamin_N PF00350.18 gi|110669153|ref|YP_658964.1| - 0.15 11.8 0.5 0.33 10.7 0.0 1.8 2 0 0 2 2 2 0 Dynamin family SeqA PF03925.8 gi|110669154|ref|YP_658965.1| - 3e-05 23.7 0.0 5.9e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 SeqA protein T5orf172 PF10544.4 gi|110669154|ref|YP_658965.1| - 0.021 15.2 0.1 0.1 12.9 0.0 2.0 2 0 0 2 2 2 0 T5orf172 domain MUG113 PF13455.1 gi|110669154|ref|YP_658965.1| - 0.025 15.0 0.2 0.24 11.8 0.1 2.2 2 0 0 2 2 2 0 Meiotically up-regulated gene 113 DUF2800 PF10926.3 gi|110669154|ref|YP_658965.1| - 0.044 12.9 0.1 0.14 11.2 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2800) DEAD PF00270.24 gi|110669155|ref|YP_658966.1| - 1.5e-20 73.3 0.0 5.6e-20 71.5 0.0 1.9 1 1 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|110669155|ref|YP_658966.1| - 1.2e-15 57.8 0.0 6.4e-15 55.4 0.0 2.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.26 gi|110669155|ref|YP_658966.1| - 1.4e-12 47.2 0.0 8.4e-12 44.7 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain zf-C2H2_jaz PF12171.3 gi|110669155|ref|YP_658966.1| - 0.02 15.0 0.5 0.13 12.4 0.0 2.6 2 0 0 2 2 2 0 Zinc-finger double-stranded RNA-binding zf-met PF12874.2 gi|110669155|ref|YP_658966.1| - 0.058 13.6 0.2 0.36 11.1 0.0 2.4 2 0 0 2 2 2 0 Zinc-finger of C2H2 type DZR PF12773.2 gi|110669155|ref|YP_658966.1| - 0.2 11.4 16.5 0.48 10.2 0.3 4.8 5 0 0 5 5 5 0 Double zinc ribbon Methyltransf_26 PF13659.1 gi|110669156|ref|YP_658967.1| - 3.6e-07 30.2 0.0 1.1e-06 28.5 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|110669156|ref|YP_658967.1| - 5.5e-06 25.6 0.0 0.00018 20.6 0.0 2.8 2 1 1 3 3 3 1 N-6 DNA Methylase Eco57I PF07669.6 gi|110669156|ref|YP_658967.1| - 2.6e-05 24.5 0.0 0.0023 18.2 0.0 2.8 1 1 0 1 1 1 1 Eco57I restriction-modification methylase UPF0020 PF01170.13 gi|110669156|ref|YP_658967.1| - 0.12 11.8 0.0 0.64 9.5 0.0 2.0 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 SNF2_N PF00176.18 gi|110669157|ref|YP_658968.1| - 6.9e-18 64.4 0.0 1.7e-17 63.2 0.0 1.6 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|110669157|ref|YP_658968.1| - 9.5e-15 54.2 0.2 3.3e-14 52.5 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|110669157|ref|YP_658968.1| - 2.1e-09 37.5 0.0 2.1e-09 37.5 0.0 2.6 3 2 0 3 3 3 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|110669157|ref|YP_658968.1| - 1.6e-05 24.4 0.0 3.6e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Phage_30_8 PF06019.6 gi|110669157|ref|YP_658968.1| - 0.084 12.5 0.0 0.95 9.1 0.0 2.4 2 0 0 2 2 2 0 Phage GP30.8 protein Methyltransf_26 PF13659.1 gi|110669158|ref|YP_658969.1| - 9.1e-16 57.9 0.0 2.6e-15 56.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Eco57I PF07669.6 gi|110669158|ref|YP_658969.1| - 7e-10 39.2 0.0 1.2e-09 38.4 0.0 1.4 1 0 0 1 1 1 1 Eco57I restriction-modification methylase MTS PF05175.9 gi|110669158|ref|YP_658969.1| - 2.4e-06 27.0 0.0 3.7e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TaqI_C PF12950.2 gi|110669158|ref|YP_658969.1| - 3.8e-06 26.6 0.0 5.9e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain Methyltransf_18 PF12847.2 gi|110669158|ref|YP_658969.1| - 5.2e-06 27.0 0.0 9.8e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|110669158|ref|YP_658969.1| - 0.00061 19.4 0.0 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|110669158|ref|YP_658969.1| - 0.0038 17.5 0.0 0.02 15.2 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|110669158|ref|YP_658969.1| - 0.0062 15.6 0.0 0.053 12.5 0.0 1.9 1 1 0 1 1 1 1 N-6 DNA Methylase ETF PF01012.16 gi|110669158|ref|YP_658969.1| - 0.0073 16.0 0.0 0.059 13.0 0.0 2.0 2 0 0 2 2 2 1 Electron transfer flavoprotein domain Methyltransf_11 PF08241.7 gi|110669158|ref|YP_658969.1| - 0.063 13.7 0.0 0.22 12.0 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain RrnaAD PF00398.15 gi|110669158|ref|YP_658969.1| - 0.21 10.5 0.0 0.32 9.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase HATPase_c_3 PF13589.1 gi|110669161|ref|YP_658972.1| - 7.3e-08 32.1 0.0 3.6e-07 29.8 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|110669161|ref|YP_658972.1| - 1.1e-05 25.0 0.0 3.3e-05 23.5 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3883 PF13020.1 gi|110669161|ref|YP_658972.1| - 3.6e-05 23.4 0.0 8.9e-05 22.1 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) HATPase_c_2 PF13581.1 gi|110669161|ref|YP_658972.1| - 0.092 12.5 0.0 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain DUF932 PF06067.6 gi|110669163|ref|YP_658974.1| - 4e-07 29.5 0.0 6.6e-07 28.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF932) SMP PF04927.7 gi|110669163|ref|YP_658974.1| - 0.14 12.1 0.0 0.33 10.9 0.0 1.6 1 0 0 1 1 1 0 Seed maturation protein Peptidase_M48 PF01435.13 gi|110669165|ref|YP_658976.1| - 3.7e-06 26.6 0.2 5.4e-05 22.8 0.0 2.1 1 1 1 2 2 2 2 Peptidase family M48 TrbC PF04956.8 gi|110669168|ref|YP_658979.1| - 0.0037 17.2 0.6 0.0042 17.0 0.4 1.1 1 0 0 1 1 1 1 TrbC/VIRB2 family TatC PF00902.13 gi|110669168|ref|YP_658979.1| - 0.015 14.6 0.1 0.018 14.4 0.1 1.0 1 0 0 1 1 1 0 Sec-independent protein translocase protein (TatC) TctB PF07331.6 gi|110669168|ref|YP_658979.1| - 0.018 14.6 1.4 0.021 14.4 0.9 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family SPW PF03779.9 gi|110669168|ref|YP_658979.1| - 0.15 11.4 3.2 0.3 10.5 0.3 2.1 2 0 0 2 2 2 0 SPW repeat TrbL PF04610.9 gi|110669169|ref|YP_658980.1| - 5 6.7 25.4 1.5 8.4 14.6 2.3 1 1 2 3 3 3 0 TrbL/VirB6 plasmid conjugal transfer protein AAA_10 PF12846.2 gi|110669170|ref|YP_658981.1| - 6.8e-25 88.1 0.0 1.1e-12 48.0 0.0 2.6 1 1 1 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|110669170|ref|YP_658981.1| - 1.6e-08 34.6 5.7 1.9e-08 34.4 0.0 2.8 2 1 0 2 2 2 1 Domain of unknown function DUF87 CagE_TrbE_VirB PF03135.9 gi|110669170|ref|YP_658981.1| - 0.004 16.9 0.8 0.06 13.1 0.0 3.0 1 1 1 2 2 2 1 CagE, TrbE, VirB family, component of type IV transporter system TraC_F_IV PF11130.3 gi|110669170|ref|YP_658981.1| - 0.005 16.3 4.0 0.005 16.3 2.8 2.5 2 1 0 2 2 2 1 F pilus assembly Type-IV secretion system for plasmid transfer AAA_22 PF13401.1 gi|110669170|ref|YP_658981.1| - 0.01 15.9 3.7 0.018 15.2 0.1 3.0 2 2 1 3 3 3 0 AAA domain AAA_25 PF13481.1 gi|110669170|ref|YP_658981.1| - 0.026 13.9 0.4 0.071 12.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain DEAD PF00270.24 gi|110669170|ref|YP_658981.1| - 0.026 14.0 1.2 0.057 12.9 0.1 2.1 3 0 0 3 3 3 0 DEAD/DEAH box helicase DUF4164 PF13747.1 gi|110669170|ref|YP_658981.1| - 0.027 14.5 5.5 0.64 10.1 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4164) AAA_10 PF12846.2 gi|110669172|ref|YP_658983.1| - 3.6e-20 72.6 0.2 3.6e-20 72.6 0.1 1.5 2 0 0 2 2 2 1 AAA-like domain TraG-D_C PF12696.2 gi|110669172|ref|YP_658983.1| - 8.3e-09 35.3 2.1 9e-08 32.0 0.2 2.9 2 1 0 2 2 2 1 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.4 gi|110669172|ref|YP_658983.1| - 9.5e-07 27.7 0.1 0.002 16.8 0.0 2.3 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|110669172|ref|YP_658983.1| - 0.00012 22.1 2.0 0.61 10.2 0.1 3.7 3 1 0 3 3 3 1 AAA domain GGDEF PF00990.16 gi|110669172|ref|YP_658983.1| - 0.0043 16.6 1.7 0.98 8.9 0.0 2.9 2 0 0 2 2 2 2 GGDEF domain AAA_19 PF13245.1 gi|110669172|ref|YP_658983.1| - 0.0045 16.7 0.0 0.012 15.2 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain DEAD PF00270.24 gi|110669172|ref|YP_658983.1| - 0.0062 16.0 0.0 0.024 14.1 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Ovate PF04844.8 gi|110669172|ref|YP_658983.1| - 0.13 12.1 0.1 0.29 10.9 0.0 1.6 1 0 0 1 1 1 0 Transcriptional repressor, ovate MscS_porin PF12795.2 gi|110669174|ref|YP_658985.1| - 0.0026 17.1 1.2 0.0026 17.1 0.8 1.7 2 0 0 2 2 2 1 Mechanosensitive ion channel porin domain HTH_45 PF14947.1 gi|110669174|ref|YP_658985.1| - 0.0034 17.1 0.3 0.054 13.3 0.2 2.3 1 1 0 1 1 1 1 Winged helix-turn-helix PspA_IM30 PF04012.7 gi|110669174|ref|YP_658985.1| - 0.004 16.5 0.6 0.005 16.2 0.2 1.4 1 1 0 1 1 1 1 PspA/IM30 family DUF2513 PF10711.4 gi|110669174|ref|YP_658985.1| - 0.0045 17.0 0.2 0.0085 16.1 0.1 1.6 1 1 0 1 1 1 1 Hypothetical protein (DUF2513) DUF4423 PF14394.1 gi|110669174|ref|YP_658985.1| - 0.025 14.1 0.6 0.73 9.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) RNA_pol_Rpc34 PF05158.7 gi|110669174|ref|YP_658985.1| - 0.03 13.5 1.3 0.075 12.2 0.1 1.9 1 1 1 2 2 2 0 RNA polymerase Rpc34 subunit Replic_Relax PF13814.1 gi|110669174|ref|YP_658985.1| - 0.036 13.9 0.1 0.048 13.5 0.1 1.2 1 0 0 1 1 1 0 Replication-relaxation Shugoshin_N PF07558.6 gi|110669174|ref|YP_658985.1| - 0.049 13.3 0.4 0.1 12.3 0.3 1.5 1 0 0 1 1 1 0 Shugoshin N-terminal coiled-coil region HTH_27 PF13463.1 gi|110669174|ref|YP_658985.1| - 0.056 13.7 0.1 0.12 12.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Mga PF08280.6 gi|110669174|ref|YP_658985.1| - 0.063 13.0 0.3 0.45 10.3 0.0 2.1 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain FlaC_arch PF05377.6 gi|110669174|ref|YP_658985.1| - 0.066 13.1 0.5 0.14 12.0 0.4 1.6 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) YjcQ PF09639.5 gi|110669174|ref|YP_658985.1| - 0.077 13.1 0.5 0.17 11.9 0.2 1.7 1 1 0 1 1 1 0 YjcQ protein Syntaxin-6_N PF09177.6 gi|110669174|ref|YP_658985.1| - 0.086 13.2 0.8 0.086 13.2 0.5 2.1 1 1 0 2 2 2 0 Syntaxin 6, N-terminal z-alpha PF02295.12 gi|110669174|ref|YP_658985.1| - 0.097 12.4 0.1 0.21 11.3 0.1 1.5 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain DUF2250 PF10007.4 gi|110669174|ref|YP_658985.1| - 0.12 12.2 2.2 0.086 12.7 0.4 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) TPR_MLP1_2 PF07926.7 gi|110669174|ref|YP_658985.1| - 0.15 11.8 7.1 0.034 13.8 1.6 2.0 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein HEXIM PF15313.1 gi|110669174|ref|YP_658985.1| - 0.18 11.9 2.5 0.26 11.4 1.8 1.7 1 1 0 1 1 1 0 Hexamethylene bis-acetamide-inducible protein Hydrolase_3 PF08282.7 gi|110669174|ref|YP_658985.1| - 0.25 10.8 2.4 0.28 10.7 1.6 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Bap31 PF05529.7 gi|110669174|ref|YP_658985.1| - 1.5 8.1 5.1 0.24 10.8 1.1 1.4 2 0 0 2 2 2 0 B-cell receptor-associated protein 31-like TBPIP PF07106.8 gi|110669174|ref|YP_658985.1| - 1.9 8.0 7.8 0.52 9.8 1.7 2.0 1 1 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) FlaG PF03646.10 gi|110669174|ref|YP_658985.1| - 4 7.6 7.9 5.5 7.1 1.8 2.1 2 0 0 2 2 2 0 FlaG protein DUF16 PF01519.11 gi|110669176|ref|YP_658987.1| - 0.072 13.3 0.4 0.25 11.5 0.3 1.9 1 0 0 1 1 1 0 Protein of unknown function DUF16 Syntaxin PF00804.20 gi|110669176|ref|YP_658987.1| - 0.17 12.0 2.5 0.22 11.6 0.7 2.0 2 0 0 2 2 2 0 Syntaxin DUF883 PF05957.8 gi|110669176|ref|YP_658987.1| - 0.46 10.9 4.8 0.55 10.6 0.3 2.7 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF883) AAA PF00004.24 gi|110669177|ref|YP_658988.1| - 1.4e-42 144.9 0.0 2.6e-42 144.1 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|110669177|ref|YP_658988.1| - 3.8e-07 30.1 0.0 8.2e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|110669177|ref|YP_658988.1| - 4.4e-06 26.7 0.3 0.00056 19.9 0.0 3.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|110669177|ref|YP_658988.1| - 1.1e-05 25.5 0.3 0.00071 19.7 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|110669177|ref|YP_658988.1| - 5.4e-05 22.6 1.0 0.074 12.4 0.1 2.3 1 1 1 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|110669177|ref|YP_658988.1| - 0.00013 22.2 0.2 0.0014 18.9 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|110669177|ref|YP_658988.1| - 0.00015 22.5 3.0 0.0003 21.6 0.6 2.7 2 1 0 2 2 1 1 AAA domain RuvB_N PF05496.7 gi|110669177|ref|YP_658988.1| - 0.00019 20.5 0.0 0.0018 17.3 0.0 2.4 3 0 0 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus TIP49 PF06068.8 gi|110669177|ref|YP_658988.1| - 0.00019 20.2 0.3 0.00064 18.5 0.0 2.0 2 0 0 2 2 2 1 TIP49 C-terminus AAA_33 PF13671.1 gi|110669177|ref|YP_658988.1| - 0.00064 19.6 0.0 0.0024 17.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|110669177|ref|YP_658988.1| - 0.00068 19.0 0.4 0.035 13.5 0.0 2.6 3 0 0 3 3 2 1 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|110669177|ref|YP_658988.1| - 0.00079 18.6 0.0 0.0016 17.6 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|110669177|ref|YP_658988.1| - 0.002 17.8 0.4 0.018 14.7 0.3 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|110669177|ref|YP_658988.1| - 0.0023 17.8 0.0 0.005 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|110669177|ref|YP_658988.1| - 0.0044 16.7 0.1 0.015 15.0 0.1 2.0 1 1 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|110669177|ref|YP_658988.1| - 0.012 15.2 0.0 0.044 13.4 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA_24 PF13479.1 gi|110669177|ref|YP_658988.1| - 0.014 14.9 0.1 0.035 13.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|110669177|ref|YP_658988.1| - 0.018 14.7 0.0 0.045 13.5 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain RNA_helicase PF00910.17 gi|110669177|ref|YP_658988.1| - 0.019 15.1 0.0 0.036 14.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF2075 PF09848.4 gi|110669177|ref|YP_658988.1| - 0.022 13.7 0.0 0.035 13.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF927 PF06048.6 gi|110669177|ref|YP_658988.1| - 0.024 13.8 0.0 0.055 12.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF927) AAA_28 PF13521.1 gi|110669177|ref|YP_658988.1| - 0.04 13.8 0.0 0.088 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|110669177|ref|YP_658988.1| - 0.049 12.7 1.4 0.075 12.1 0.0 2.0 3 0 0 3 3 3 0 Zeta toxin PhoH PF02562.11 gi|110669177|ref|YP_658988.1| - 0.067 12.4 0.1 0.38 9.9 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein Parvo_NS1 PF01057.12 gi|110669177|ref|YP_658988.1| - 0.092 11.6 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 tRNA-synt_1 PF00133.17 gi|110669178|ref|YP_658989.1| - 0.028 12.4 0.6 0.038 11.9 0.4 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) Hemerythrin PF01814.18 gi|110669178|ref|YP_658989.1| - 0.12 12.5 2.8 0.29 11.2 0.6 2.3 2 0 0 2 2 2 0 Hemerythrin HHE cation binding domain YlqD PF11068.3 gi|110669178|ref|YP_658989.1| - 0.13 12.2 3.6 0.35 10.9 2.5 1.7 1 0 0 1 1 1 0 YlqD protein ABC_tran PF00005.22 gi|110669179|ref|YP_658990.1| - 2.6e-33 115.2 0.0 3.7e-33 114.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110669179|ref|YP_658990.1| - 3.7e-12 46.8 0.1 7.1e-06 26.1 0.1 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|110669179|ref|YP_658990.1| - 3.3e-06 26.5 0.5 0.0048 16.1 0.1 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|110669179|ref|YP_658990.1| - 2.4e-05 23.7 0.0 4.8e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|110669179|ref|YP_658990.1| - 2.7e-05 23.4 0.4 0.0013 17.8 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|110669179|ref|YP_658990.1| - 3.5e-05 24.2 0.4 7.1e-05 23.2 0.1 1.6 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|110669179|ref|YP_658990.1| - 6.3e-05 23.1 0.2 0.00069 19.7 0.1 2.4 1 1 1 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|110669179|ref|YP_658990.1| - 0.00011 21.7 0.1 0.0065 15.9 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|110669179|ref|YP_658990.1| - 0.00015 20.9 0.0 0.00027 20.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|110669179|ref|YP_658990.1| - 0.0028 18.4 0.0 0.0045 17.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain MutS_V PF00488.16 gi|110669179|ref|YP_658990.1| - 0.0038 16.6 0.0 0.0067 15.8 0.0 1.3 1 0 0 1 1 1 1 MutS domain V AAA_16 PF13191.1 gi|110669179|ref|YP_658990.1| - 0.0081 16.1 0.1 0.16 11.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain Miro PF08477.8 gi|110669179|ref|YP_658990.1| - 0.011 16.1 0.0 0.029 14.8 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein MMR_HSR1 PF01926.18 gi|110669179|ref|YP_658990.1| - 0.013 15.4 0.9 0.058 13.3 0.6 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.7 gi|110669179|ref|YP_658990.1| - 0.013 15.1 0.5 0.033 13.8 0.1 1.7 2 0 0 2 2 2 0 NACHT domain Arch_ATPase PF01637.13 gi|110669179|ref|YP_658990.1| - 0.014 15.1 0.0 0.033 13.8 0.0 1.6 2 0 0 2 2 2 0 Archaeal ATPase AAA_25 PF13481.1 gi|110669179|ref|YP_658990.1| - 0.014 14.7 0.0 0.087 12.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|110669179|ref|YP_658990.1| - 0.016 14.6 0.2 0.035 13.5 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|110669179|ref|YP_658990.1| - 0.018 14.6 0.1 0.073 12.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|110669179|ref|YP_658990.1| - 0.031 14.1 0.0 0.085 12.7 0.0 1.8 2 1 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|110669179|ref|YP_658990.1| - 0.031 14.5 0.3 0.062 13.6 0.2 1.9 1 1 0 1 1 1 0 AAA domain Dynamin_N PF00350.18 gi|110669179|ref|YP_658990.1| - 0.039 13.7 0.2 0.35 10.6 0.1 2.0 2 0 0 2 2 2 0 Dynamin family AAA_33 PF13671.1 gi|110669179|ref|YP_658990.1| - 0.042 13.7 0.2 0.074 12.9 0.1 1.7 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|110669179|ref|YP_658990.1| - 0.059 12.2 0.4 0.11 11.3 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain MobB PF03205.9 gi|110669179|ref|YP_658990.1| - 0.073 12.7 0.1 0.13 11.9 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B GTP_EFTU PF00009.22 gi|110669179|ref|YP_658990.1| - 0.078 12.3 0.2 0.39 10.1 0.0 2.1 2 1 1 3 3 3 0 Elongation factor Tu GTP binding domain T2SE PF00437.15 gi|110669179|ref|YP_658990.1| - 0.091 11.6 0.1 0.17 10.7 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Guanylate_kin PF00625.16 gi|110669179|ref|YP_658990.1| - 0.14 11.6 0.4 3.7 6.9 0.0 2.2 2 0 0 2 2 2 0 Guanylate kinase AAA_24 PF13479.1 gi|110669179|ref|YP_658990.1| - 0.14 11.6 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|110669180|ref|YP_658991.1| - 1.1e-31 110.0 0.0 1.5e-31 109.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110669180|ref|YP_658991.1| - 1.2e-14 54.9 0.6 2.1e-06 27.9 0.1 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|110669180|ref|YP_658991.1| - 0.00023 20.6 0.1 0.00048 19.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|110669180|ref|YP_658991.1| - 0.00074 19.9 0.2 0.0014 19.0 0.2 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|110669180|ref|YP_658991.1| - 0.0034 16.6 1.2 0.12 11.6 0.9 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|110669180|ref|YP_658991.1| - 0.0038 16.4 0.0 0.0062 15.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 FlbD PF06289.6 gi|110669180|ref|YP_658991.1| - 0.0076 15.6 0.3 0.014 14.7 0.2 1.5 1 0 0 1 1 1 1 Flagellar protein (FlbD) ABC_ATPase PF09818.4 gi|110669180|ref|YP_658991.1| - 0.0089 14.6 0.1 0.68 8.4 0.0 2.2 2 0 0 2 2 2 1 Predicted ATPase of the ABC class BCA_ABC_TP_C PF12399.3 gi|110669180|ref|YP_658991.1| - 0.016 14.8 0.5 0.042 13.5 0.4 1.7 1 1 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter AAA_16 PF13191.1 gi|110669180|ref|YP_658991.1| - 0.016 15.1 1.4 0.72 9.8 1.0 2.1 1 1 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|110669180|ref|YP_658991.1| - 0.025 14.5 0.0 0.044 13.7 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase Zeta_toxin PF06414.7 gi|110669180|ref|YP_658991.1| - 0.053 12.6 0.0 0.082 11.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin DUF2813 PF11398.3 gi|110669180|ref|YP_658991.1| - 0.055 12.5 0.0 0.08 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) AAA_15 PF13175.1 gi|110669180|ref|YP_658991.1| - 0.093 11.7 0.1 5.9 5.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.1 gi|110669180|ref|YP_658991.1| - 0.14 11.6 0.0 0.22 11.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|110669180|ref|YP_658991.1| - 0.32 11.1 2.8 5 7.2 1.9 2.4 1 1 0 1 1 1 0 AAA domain BPD_transp_2 PF02653.11 gi|110669181|ref|YP_658992.1| - 1.8e-36 125.4 39.4 2.1e-36 125.2 27.3 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|110669182|ref|YP_658993.1| - 1.9e-47 161.4 26.6 2.2e-47 161.2 18.4 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Dexa_ind PF15198.1 gi|110669182|ref|YP_658993.1| - 0.22 11.4 1.9 4.4 7.2 0.1 2.5 2 0 0 2 2 2 0 Dexamethasone-induced Peripla_BP_6 PF13458.1 gi|110669183|ref|YP_658994.1| - 7e-44 150.5 7.5 8.7e-44 150.2 5.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|110669183|ref|YP_658994.1| - 7.1e-26 90.8 0.0 8.2e-26 90.6 0.0 1.0 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|110669183|ref|YP_658994.1| - 7.3e-14 51.2 0.0 1.4e-08 33.9 0.0 2.1 2 0 0 2 2 2 2 Periplasmic binding protein domain PhoU PF01895.14 gi|110669185|ref|YP_658996.1| - 8.8e-37 125.4 8.8 5.2e-21 74.8 2.2 2.1 2 0 0 2 2 2 2 PhoU domain ATP-synt_D PF01813.12 gi|110669185|ref|YP_658996.1| - 0.011 15.3 0.1 0.037 13.5 0.0 1.8 2 0 0 2 2 2 0 ATP synthase subunit D Herp-Cyclin PF09241.5 gi|110669185|ref|YP_658996.1| - 0.098 12.9 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 Herpesviridae viral cyclin DUF3349 PF11829.3 gi|110669185|ref|YP_658996.1| - 0.12 12.7 0.7 2.3 8.6 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3349) PhoU PF01895.14 gi|110669186|ref|YP_658997.1| - 1.3e-24 86.4 9.2 1.1e-16 60.9 1.1 2.4 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|110669186|ref|YP_658997.1| - 8.2e-11 41.3 0.0 1.9e-10 40.2 0.0 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PhoU_div PF01865.11 gi|110669186|ref|YP_658997.1| - 0.0034 16.5 1.4 0.0034 16.5 1.0 1.6 2 0 0 2 2 2 1 Protein of unknown function DUF47 Ribosomal_S8e PF01201.17 gi|110669187|ref|YP_658998.1| - 1.2e-31 109.6 1.2 1.3e-31 109.4 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e DUF2240 PF09999.4 gi|110669188|ref|YP_658999.1| - 3.5e-52 175.6 0.1 4.2e-52 175.4 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) CPSase_L_D2 PF02786.12 gi|110669189|ref|YP_659000.1| - 5.2e-95 316.6 0.1 1.6e-57 194.2 0.0 2.9 2 1 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|110669189|ref|YP_659000.1| - 1.9e-45 153.5 0.5 1.8e-21 76.2 0.1 2.7 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP-grasp_4 PF13535.1 gi|110669189|ref|YP_659000.1| - 1.3e-26 93.4 0.0 2.2e-14 53.6 0.0 2.7 2 0 0 2 2 2 2 ATP-grasp domain CPSase_L_D3 PF02787.14 gi|110669189|ref|YP_659000.1| - 2.8e-23 82.0 0.2 5.9e-23 80.9 0.1 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATPgrasp_Ter PF15632.1 gi|110669189|ref|YP_659000.1| - 6e-19 67.9 0.0 9.5e-10 37.7 0.0 4.0 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|110669189|ref|YP_659000.1| - 2.8e-12 46.4 0.0 3.2e-08 33.2 0.0 2.6 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|110669189|ref|YP_659000.1| - 6.7e-12 45.0 0.0 2.9e-06 26.7 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|110669189|ref|YP_659000.1| - 2e-09 37.5 0.1 0.00012 21.9 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp domain FxsA PF04186.8 gi|110669193|ref|YP_659004.1| - 2.6e-29 101.2 7.8 3.2e-29 100.9 5.4 1.0 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein Thioredox_DsbH PF03190.10 gi|110669194|ref|YP_659005.1| - 1.3e-27 96.4 0.0 2.2e-27 95.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|110669194|ref|YP_659005.1| - 1.2e-12 47.6 0.0 2.7e-12 46.5 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.15 gi|110669194|ref|YP_659005.1| - 2.3e-07 30.4 0.0 4.3e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|110669194|ref|YP_659005.1| - 0.00018 21.6 0.0 0.00076 19.6 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain GCHY-1 PF02649.9 gi|110669195|ref|YP_659006.1| - 2.6e-85 286.0 2.3 2.9e-85 285.8 1.6 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 DNA_pol_B_palm PF14792.1 gi|110669195|ref|YP_659006.1| - 0.04 13.9 0.1 0.11 12.5 0.0 1.8 2 0 0 2 2 2 0 DNA polymerase beta palm Pyr_redox_2 PF07992.9 gi|110669197|ref|YP_659008.1| - 4.5e-30 105.0 0.2 5.8e-30 104.6 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|110669197|ref|YP_659008.1| - 1.1e-07 32.1 0.5 6.2e-05 23.3 0.0 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|110669197|ref|YP_659008.1| - 0.00052 20.1 2.1 0.021 14.8 0.2 3.3 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|110669197|ref|YP_659008.1| - 0.0088 14.9 2.9 6.2 5.6 0.0 3.5 4 0 0 4 4 4 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|110669197|ref|YP_659008.1| - 0.047 13.7 2.2 0.92 9.5 0.0 3.0 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|110669197|ref|YP_659008.1| - 0.057 11.8 0.0 5.4 5.3 0.0 2.9 3 1 0 3 3 3 0 HI0933-like protein NAD_binding_9 PF13454.1 gi|110669197|ref|YP_659008.1| - 0.11 12.2 3.8 11 5.7 0.0 3.7 4 0 0 4 4 4 0 FAD-NAD(P)-binding Amino_oxidase PF01593.19 gi|110669199|ref|YP_659010.1| - 6e-21 75.0 0.2 9.3e-17 61.2 0.0 2.1 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|110669199|ref|YP_659010.1| - 6.4e-13 48.5 3.1 8.5e-13 48.1 0.3 2.6 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|110669199|ref|YP_659010.1| - 1.1e-06 28.7 0.5 7.2e-05 22.7 0.1 2.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|110669199|ref|YP_659010.1| - 1.9e-06 27.0 1.6 3.5e-06 26.1 0.4 1.9 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|110669199|ref|YP_659010.1| - 7.9e-06 24.9 3.4 1.6e-05 23.9 2.4 1.5 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|110669199|ref|YP_659010.1| - 0.00018 20.6 0.7 0.00034 19.8 0.5 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|110669199|ref|YP_659010.1| - 0.00061 18.7 0.5 0.00061 18.7 0.4 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|110669199|ref|YP_659010.1| - 0.00088 19.3 0.9 0.0018 18.3 0.2 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|110669199|ref|YP_659010.1| - 0.0017 16.9 1.7 0.0026 16.2 1.2 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox PF00070.22 gi|110669199|ref|YP_659010.1| - 0.0047 17.2 3.4 0.016 15.5 0.5 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|110669199|ref|YP_659010.1| - 0.016 13.8 0.9 0.038 12.6 0.3 1.8 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|110669199|ref|YP_659010.1| - 0.028 14.2 0.6 0.06 13.1 0.1 1.8 2 0 0 2 2 2 0 FAD-NAD(P)-binding 3HCDH_N PF02737.13 gi|110669199|ref|YP_659010.1| - 0.04 13.5 0.4 0.076 12.6 0.3 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|110669199|ref|YP_659010.1| - 0.049 13.4 0.1 0.1 12.4 0.1 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase FMO-like PF00743.14 gi|110669199|ref|YP_659010.1| - 0.073 11.2 0.0 0.1 10.7 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like Thi4 PF01946.12 gi|110669199|ref|YP_659010.1| - 0.083 11.9 6.0 0.023 13.7 1.0 2.3 3 0 0 3 3 3 0 Thi4 family Lycopene_cycl PF05834.7 gi|110669199|ref|YP_659010.1| - 0.085 11.7 0.1 0.17 10.7 0.1 1.5 1 0 0 1 1 1 0 Lycopene cyclase protein ApbA PF02558.11 gi|110669199|ref|YP_659010.1| - 0.11 11.8 1.6 0.23 10.8 1.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.14 gi|110669199|ref|YP_659010.1| - 0.19 10.7 1.7 0.38 9.7 1.1 1.5 1 0 0 1 1 1 0 FAD binding domain GHMP_kinases_N PF00288.21 gi|110669200|ref|YP_659011.1| - 5.3e-15 55.2 2.3 2e-14 53.4 1.6 2.0 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|110669200|ref|YP_659011.1| - 1.1e-06 28.6 0.2 2.4e-06 27.6 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal Tubulin PF00091.20 gi|110669200|ref|YP_659011.1| - 0.033 13.9 0.1 0.049 13.4 0.1 1.2 1 0 0 1 1 1 0 Tubulin/FtsZ family, GTPase domain SOR_SNZ PF01680.12 gi|110669201|ref|YP_659012.1| - 7.2e-98 326.2 3.8 9.4e-98 325.9 2.7 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|110669201|ref|YP_659012.1| - 1.2e-09 37.5 2.6 1.8e-06 27.2 0.4 2.3 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|110669201|ref|YP_659012.1| - 0.01 14.7 0.2 0.074 11.8 0.1 2.1 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) IGPS PF00218.16 gi|110669201|ref|YP_659012.1| - 0.011 14.7 0.0 0.062 12.3 0.0 2.0 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase OMPdecase PF00215.19 gi|110669201|ref|YP_659012.1| - 0.058 12.7 0.1 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family Acyl-CoA_dh_N PF02771.11 gi|110669201|ref|YP_659012.1| - 0.064 13.8 0.2 0.13 12.8 0.1 1.5 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, N-terminal domain NanE PF04131.9 gi|110669201|ref|YP_659012.1| - 0.097 11.6 0.7 0.23 10.3 0.0 1.9 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase DUF1405 PF07187.6 gi|110669202|ref|YP_659013.1| - 5.4e-51 172.5 16.2 6.9e-51 172.2 11.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) Ins_allergen_rp PF06757.8 gi|110669203|ref|YP_659014.1| - 0.002 17.6 1.6 0.0032 16.9 1.1 1.3 1 0 0 1 1 1 1 Insect allergen related repeat, nitrile-specifier detoxification ADC PF06314.6 gi|110669203|ref|YP_659014.1| - 0.13 11.5 0.2 0.19 11.0 0.1 1.2 1 0 0 1 1 1 0 Acetoacetate decarboxylase (ADC) SSF PF00474.12 gi|110669204|ref|YP_659015.1| - 1.4e-45 155.6 28.7 2e-45 155.1 19.9 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF3311 PF11755.3 gi|110669205|ref|YP_659016.1| - 1.2e-15 56.7 7.4 1.2e-15 56.7 5.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) UbiA PF01040.13 gi|110669205|ref|YP_659016.1| - 0.24 10.6 7.1 0.28 10.3 4.9 1.0 1 0 0 1 1 1 0 UbiA prenyltransferase family Toprim_4 PF13662.1 gi|110669206|ref|YP_659017.1| - 2.8e-09 36.8 0.1 9.6e-09 35.1 0.1 2.0 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.1 gi|110669206|ref|YP_659017.1| - 0.016 15.5 0.0 0.042 14.1 0.0 1.7 1 0 0 1 1 1 0 Toprim-like Acetyltransf_1 PF00583.19 gi|110669207|ref|YP_659018.1| - 1.1e-10 41.3 0.0 1.5e-10 40.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|110669207|ref|YP_659018.1| - 7.2e-07 29.3 0.1 2.1e-06 27.8 0.1 1.8 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|110669207|ref|YP_659018.1| - 0.00023 20.8 0.0 0.00042 20.0 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|110669207|ref|YP_659018.1| - 0.0032 17.3 0.0 0.0042 16.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|110669207|ref|YP_659018.1| - 0.0038 17.0 0.0 0.067 13.0 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|110669207|ref|YP_659018.1| - 0.01 15.9 0.0 0.019 15.1 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF92 PF01940.11 gi|110669208|ref|YP_659019.1| - 6.2e-65 218.5 14.3 6.2e-65 218.5 9.9 2.7 3 1 0 3 3 3 1 Integral membrane protein DUF92 DUF46 PF01864.12 gi|110669208|ref|YP_659019.1| - 0.0051 16.7 2.9 0.0051 16.7 2.0 3.1 2 1 1 3 3 3 1 Putative integral membrane protein DUF46 Prenyltransf PF01255.14 gi|110669209|ref|YP_659020.1| - 2.5e-27 95.4 0.0 1e-26 93.4 0.0 1.7 2 0 0 2 2 2 1 Putative undecaprenyl diphosphate synthase Prenyltransf PF01255.14 gi|110669210|ref|YP_659021.1| - 2.6e-71 239.3 0.0 3.6e-71 238.8 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase NAD_binding_7 PF13241.1 gi|110669213|ref|YP_659024.1| - 8.8e-23 80.5 0.0 2e-22 79.3 0.0 1.6 1 1 1 2 2 2 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.1 gi|110669213|ref|YP_659024.1| - 9.1e-08 30.9 0.0 2.5e-07 29.5 0.0 1.8 1 0 0 1 1 1 1 Sirohaem biosynthesis protein central TrkA_N PF02254.13 gi|110669213|ref|YP_659024.1| - 0.0035 17.3 0.1 0.017 15.1 0.1 2.1 1 1 0 1 1 1 1 TrkA-N domain PALP PF00291.20 gi|110669213|ref|YP_659024.1| - 0.0036 16.5 0.1 0.0063 15.7 0.0 1.5 1 1 1 2 2 2 1 Pyridoxal-phosphate dependent enzyme GlutR_N PF05201.10 gi|110669214|ref|YP_659025.1| - 7.1e-33 113.3 2.4 8.1e-33 113.1 0.1 2.3 3 0 0 3 3 3 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|110669214|ref|YP_659025.1| - 3.5e-30 104.8 0.4 6.8e-30 103.9 0.3 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|110669214|ref|YP_659025.1| - 7.8e-21 73.9 3.6 1.6e-20 72.9 2.5 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.12 gi|110669214|ref|YP_659025.1| - 2.8e-06 27.6 1.4 1e-05 25.8 0.2 2.6 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|110669214|ref|YP_659025.1| - 5.4e-05 22.3 0.1 0.00011 21.3 0.0 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_2 PF03446.10 gi|110669214|ref|YP_659025.1| - 8.5e-05 22.4 0.1 0.00023 21.0 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|110669214|ref|YP_659025.1| - 0.00018 20.7 0.1 0.00037 19.6 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|110669214|ref|YP_659025.1| - 0.00043 20.5 0.2 0.0045 17.2 0.0 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|110669214|ref|YP_659025.1| - 0.0057 16.4 0.1 0.011 15.4 0.1 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.13 gi|110669214|ref|YP_659025.1| - 0.0069 16.3 0.8 0.017 15.0 0.3 1.9 1 1 0 1 1 1 1 TrkA-N domain zf-C4H2 PF10146.4 gi|110669214|ref|YP_659025.1| - 0.012 15.6 1.2 0.012 15.6 0.8 1.6 2 0 0 2 2 1 0 Zinc finger-containing protein ThiF PF00899.16 gi|110669214|ref|YP_659025.1| - 0.015 15.1 2.4 0.065 13.0 0.1 2.8 2 2 0 2 2 2 0 ThiF family 3HCDH_N PF02737.13 gi|110669214|ref|YP_659025.1| - 0.017 14.8 0.1 0.017 14.8 0.1 2.5 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|110669214|ref|YP_659025.1| - 0.017 14.5 0.1 0.18 11.2 0.0 2.3 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA AdoHcyase_NAD PF00670.16 gi|110669214|ref|YP_659025.1| - 0.031 14.1 0.4 0.062 13.1 0.3 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CPSase_L_chain PF00289.17 gi|110669214|ref|YP_659025.1| - 0.031 14.3 0.3 0.1 12.6 0.2 1.9 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain DapB_N PF01113.15 gi|110669214|ref|YP_659025.1| - 0.041 13.7 0.8 0.26 11.1 0.0 2.6 3 1 1 4 4 4 0 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|110669214|ref|YP_659025.1| - 0.053 14.0 0.7 0.17 12.4 0.0 2.1 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold End3 PF12761.2 gi|110669214|ref|YP_659025.1| - 0.068 12.8 2.9 0.12 12.0 2.0 1.3 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 RHH_1 PF01402.16 gi|110669215|ref|YP_659026.1| - 2.1e-06 27.3 0.0 2.3e-06 27.2 0.0 1.0 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family ParG PF09274.5 gi|110669215|ref|YP_659026.1| - 0.00021 21.1 0.1 0.00022 21.0 0.1 1.0 1 0 0 1 1 1 1 ParG Y1_Tnp PF01797.11 gi|110669216|ref|YP_659027.1| - 0.06 13.2 0.4 0.23 11.3 0.3 1.8 1 1 0 1 1 1 0 Transposase IS200 like Pterin_4a PF01329.14 gi|110669217|ref|YP_659028.1| - 1.2e-24 85.8 0.0 1.2e-24 85.8 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase HAD_2 PF13419.1 gi|110669218|ref|YP_659029.1| - 4e-23 82.5 0.0 5e-23 82.2 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|110669218|ref|YP_659029.1| - 1.5e-07 32.0 0.0 9.5e-06 26.1 0.0 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|110669218|ref|YP_659029.1| - 5.6e-07 29.9 0.0 9.4e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|110669218|ref|YP_659029.1| - 0.0082 15.8 0.0 0.016 14.8 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like MoeA_N PF03453.12 gi|110669219|ref|YP_659030.1| - 3.7e-45 153.1 2.4 5.8e-45 152.5 1.6 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|110669219|ref|YP_659030.1| - 4e-27 94.3 0.1 6.4e-27 93.7 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.2 gi|110669219|ref|YP_659030.1| - 4.2e-18 65.0 0.4 2.3e-17 62.5 0.0 2.4 2 1 0 2 2 2 1 PBP superfamily domain MoeA_C PF03454.10 gi|110669219|ref|YP_659030.1| - 1.9e-13 50.1 0.6 9.8e-13 47.8 0.1 2.4 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) MoeA_N PF03453.12 gi|110669220|ref|YP_659031.1| - 1.7e-40 138.0 0.6 2.8e-40 137.3 0.4 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|110669220|ref|YP_659031.1| - 6.5e-27 93.7 0.2 1.2e-26 92.8 0.2 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|110669220|ref|YP_659031.1| - 8.8e-14 51.2 5.1 2.1e-12 46.8 0.4 3.7 3 1 0 3 3 3 1 MoeA C-terminal region (domain IV) HSP20 PF00011.16 gi|110669221|ref|YP_659032.1| - 5.6e-11 42.2 0.0 6.6e-11 41.9 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family PIH1 PF08190.7 gi|110669221|ref|YP_659032.1| - 0.017 14.5 0.0 0.023 14.1 0.0 1.1 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 ABC1 PF03109.11 gi|110669222|ref|YP_659033.1| - 2.3e-27 95.3 0.0 7.8e-27 93.6 0.0 1.8 2 0 0 2 2 2 1 ABC1 family APH PF01636.18 gi|110669222|ref|YP_659033.1| - 8.7e-05 22.3 0.2 0.046 13.4 0.0 3.0 1 1 0 2 2 2 2 Phosphotransferase enzyme family DUF1469 PF07332.6 gi|110669222|ref|YP_659033.1| - 0.0044 16.7 0.2 0.018 14.7 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1469) RIO1 PF01163.17 gi|110669222|ref|YP_659033.1| - 0.016 14.5 0.0 0.047 13.0 0.0 1.7 2 0 0 2 2 2 0 RIO1 family Pkinase PF00069.20 gi|110669222|ref|YP_659033.1| - 0.025 13.7 0.0 0.11 11.5 0.0 1.9 2 0 0 2 2 2 0 Protein kinase domain eIF-5a PF01287.15 gi|110669223|ref|YP_659034.1| - 5.6e-06 26.2 0.5 1.5e-05 24.8 0.4 1.8 1 1 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|110669223|ref|YP_659034.1| - 0.032 14.0 0.0 0.066 13.0 0.0 1.5 1 0 0 1 1 1 0 Elongation factor P (EF-P) KOW-like domain Arginase PF00491.16 gi|110669224|ref|YP_659035.1| - 1.7e-57 194.8 1.9 1.9e-57 194.6 1.3 1.0 1 0 0 1 1 1 1 Arginase family SurE PF01975.12 gi|110669225|ref|YP_659036.1| - 4.6e-44 150.0 0.3 5.8e-44 149.7 0.2 1.1 1 0 0 1 1 1 1 Survival protein SurE Methyltransf_23 PF13489.1 gi|110669226|ref|YP_659037.1| - 0.0001 22.0 0.0 0.0002 21.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|110669226|ref|YP_659037.1| - 0.00011 22.5 0.0 0.00029 21.2 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|110669226|ref|YP_659037.1| - 0.00044 20.5 0.0 0.00088 19.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|110669226|ref|YP_659037.1| - 0.0043 17.6 0.0 0.011 16.2 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain PALP PF00291.20 gi|110669226|ref|YP_659037.1| - 0.022 14.0 0.0 0.037 13.2 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme Rsm22 PF09243.5 gi|110669226|ref|YP_659037.1| - 0.061 12.3 0.0 0.11 11.5 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial small ribosomal subunit Rsm22 PCMT PF01135.14 gi|110669226|ref|YP_659037.1| - 0.072 12.6 0.0 0.16 11.4 0.0 1.6 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PDH PF02153.12 gi|110669227|ref|YP_659038.1| - 2.2e-09 36.5 4.7 3.1e-08 32.8 3.2 2.0 1 1 0 1 1 1 1 Prephenate dehydrogenase Gp_dh_N PF00044.19 gi|110669227|ref|YP_659038.1| - 2.6e-05 24.2 0.3 0.00071 19.5 0.0 2.1 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|110669227|ref|YP_659038.1| - 0.00017 21.2 0.3 0.00017 21.2 0.2 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|110669227|ref|YP_659038.1| - 0.00027 20.4 0.0 0.00046 19.6 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.15 gi|110669227|ref|YP_659038.1| - 0.00047 20.2 0.3 0.0009 19.3 0.2 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.13 gi|110669227|ref|YP_659038.1| - 0.0016 18.4 0.7 0.0079 16.1 0.2 2.5 2 1 0 2 2 2 1 TrkA-N domain F420_oxidored PF03807.12 gi|110669227|ref|YP_659038.1| - 0.0022 18.3 2.2 0.0046 17.3 0.2 2.3 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|110669227|ref|YP_659038.1| - 0.0047 17.1 1.4 0.0072 16.5 0.2 1.8 2 0 0 2 2 2 1 Putative NAD(P)-binding Saccharop_dh PF03435.13 gi|110669227|ref|YP_659038.1| - 0.013 14.4 0.1 0.022 13.7 0.1 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase alpha-hel2 PF14456.1 gi|110669227|ref|YP_659038.1| - 0.016 13.9 0.9 0.03 13.1 0.6 1.4 1 0 0 1 1 1 0 Alpha-helical domain 2 ThiF PF00899.16 gi|110669227|ref|YP_659038.1| - 0.055 13.3 0.7 0.2 11.4 0.5 2.1 1 1 0 1 1 1 0 ThiF family DapB_N PF01113.15 gi|110669227|ref|YP_659038.1| - 0.075 12.9 0.7 0.13 12.1 0.1 1.9 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus NAD_binding_2 PF03446.10 gi|110669227|ref|YP_659038.1| - 0.096 12.5 1.4 0.21 11.3 0.1 2.1 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.17 gi|110669227|ref|YP_659038.1| - 0.22 12.0 2.0 0.56 10.7 0.2 2.5 1 1 1 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold Peptidase_M24 PF00557.19 gi|110669228|ref|YP_659039.1| - 1.3e-38 132.6 0.6 1.7e-38 132.2 0.4 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|110669228|ref|YP_659039.1| - 2.6e-06 27.9 0.9 6.6e-06 26.6 0.1 2.0 1 1 1 2 2 2 1 Creatinase/Prolidase N-terminal domain HTH_24 PF13412.1 gi|110669229|ref|YP_659040.1| - 1.4e-13 50.0 0.1 2.6e-13 49.1 0.0 1.5 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|110669229|ref|YP_659040.1| - 3.1e-09 36.3 0.0 5.8e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|110669229|ref|YP_659040.1| - 1.5e-08 34.0 0.0 3.2e-08 32.9 0.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|110669229|ref|YP_659040.1| - 4.2e-07 29.5 0.1 8.5e-06 25.3 0.0 2.5 3 0 0 3 3 3 1 MarR family HTH_20 PF12840.2 gi|110669229|ref|YP_659040.1| - 6e-07 29.1 0.0 1.5e-06 27.8 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain MarR PF01047.17 gi|110669229|ref|YP_659040.1| - 6.1e-07 29.0 0.0 3.5e-06 26.6 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|110669229|ref|YP_659040.1| - 1.4e-06 27.7 0.0 2.6e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|110669229|ref|YP_659040.1| - 2.8e-06 27.1 0.0 8.7e-06 25.5 0.0 1.9 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|110669229|ref|YP_659040.1| - 3.8e-06 26.4 0.0 8.5e-06 25.3 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|110669229|ref|YP_659040.1| - 1.7e-05 24.3 0.0 2.9e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.15 gi|110669229|ref|YP_659040.1| - 3.1e-05 23.5 0.0 5.7e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|110669229|ref|YP_659040.1| - 3.9e-05 23.5 0.0 6.9e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|110669229|ref|YP_659040.1| - 5.1e-05 22.7 0.0 9.8e-05 21.8 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_36 PF13730.1 gi|110669229|ref|YP_659040.1| - 0.00017 21.6 0.0 0.0003 20.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|110669229|ref|YP_659040.1| - 0.0003 20.4 0.3 0.00058 19.5 0.0 1.6 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|110669229|ref|YP_659040.1| - 0.00049 20.1 0.0 0.0018 18.3 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator HTH_6 PF01418.12 gi|110669229|ref|YP_659040.1| - 0.00055 19.6 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family HTH_10 PF04967.7 gi|110669229|ref|YP_659040.1| - 0.00073 19.0 0.1 0.0014 18.1 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_29 PF13551.1 gi|110669229|ref|YP_659040.1| - 0.0009 19.3 0.0 0.0011 19.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_27 PF13463.1 gi|110669229|ref|YP_659040.1| - 0.001 19.3 0.0 0.0017 18.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MerR PF00376.18 gi|110669229|ref|YP_659040.1| - 0.003 17.0 0.4 0.098 12.2 0.0 2.5 2 0 0 2 2 2 1 MerR family regulatory protein LacI PF00356.16 gi|110669229|ref|YP_659040.1| - 0.0038 16.8 0.0 0.0094 15.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family Sigma70_r4_2 PF08281.7 gi|110669229|ref|YP_659040.1| - 0.0041 16.5 0.1 0.0078 15.6 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 TetR_N PF00440.18 gi|110669229|ref|YP_659040.1| - 0.011 15.2 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_45 PF14947.1 gi|110669229|ref|YP_659040.1| - 0.016 15.0 0.0 0.026 14.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix TFIIE_alpha PF02002.12 gi|110669229|ref|YP_659040.1| - 0.021 14.3 0.1 0.028 13.8 0.1 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit EAP30 PF04157.11 gi|110669229|ref|YP_659040.1| - 0.029 13.5 0.0 0.041 13.0 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family FeoC PF09012.5 gi|110669229|ref|YP_659040.1| - 0.031 13.9 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator GntR PF00392.16 gi|110669229|ref|YP_659040.1| - 0.031 13.6 0.0 0.086 12.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_38 PF13936.1 gi|110669229|ref|YP_659040.1| - 0.034 13.7 0.0 0.061 12.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.7 gi|110669229|ref|YP_659040.1| - 0.049 13.7 0.0 0.084 13.0 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein DUF2250 PF10007.4 gi|110669229|ref|YP_659040.1| - 0.053 13.4 0.0 0.09 12.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_3 PF01381.17 gi|110669229|ref|YP_659040.1| - 0.062 13.1 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_1 PF00126.22 gi|110669229|ref|YP_659040.1| - 0.066 12.9 0.1 0.27 11.0 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.1 gi|110669229|ref|YP_659040.1| - 0.068 12.7 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|110669229|ref|YP_659040.1| - 0.071 13.0 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Transposase HTH_34 PF13601.1 gi|110669229|ref|YP_659040.1| - 0.071 13.1 0.0 0.13 12.3 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_17 PF12728.2 gi|110669229|ref|YP_659040.1| - 0.072 13.3 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|110669229|ref|YP_659040.1| - 0.089 12.5 0.0 0.42 10.4 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Methyltransf_14 PF08484.6 gi|110669229|ref|YP_659040.1| - 0.091 12.3 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 C-methyltransferase C-terminal domain DUF2913 PF11140.3 gi|110669229|ref|YP_659040.1| - 0.11 11.7 0.0 0.18 11.0 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2913) Phage_NinH PF06322.6 gi|110669229|ref|YP_659040.1| - 0.13 11.8 0.2 0.28 10.8 0.0 1.6 2 0 0 2 2 1 0 Phage NinH protein TPP_enzyme_C PF02775.16 gi|110669230|ref|YP_659041.1| - 4.8e-31 107.4 0.2 6.8e-31 106.9 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR PF01558.13 gi|110669231|ref|YP_659042.1| - 2.8e-53 180.3 0.0 5.1e-53 179.5 0.0 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase POR_N PF01855.14 gi|110669231|ref|YP_659042.1| - 1.5e-49 168.6 0.1 3.6e-49 167.3 0.1 1.6 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.13 gi|110669231|ref|YP_659042.1| - 3e-06 26.8 0.1 6.2e-06 25.8 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Chorismate_synt PF01264.16 gi|110669232|ref|YP_659043.1| - 4.9e-127 423.1 0.0 5.6e-127 422.9 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase EPSP_synthase PF00275.15 gi|110669233|ref|YP_659044.1| - 1.3e-101 340.0 0.5 1.5e-101 339.8 0.3 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SLA_LP_auto_ag PF05889.8 gi|110669233|ref|YP_659044.1| - 0.054 11.9 0.0 0.081 11.3 0.0 1.2 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) IMS PF00817.15 gi|110669234|ref|YP_659045.1| - 3.3e-36 124.3 0.0 6.4e-36 123.3 0.0 1.5 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.3 gi|110669234|ref|YP_659045.1| - 1.5e-14 54.0 0.0 3.5e-14 52.8 0.0 1.6 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.3 gi|110669234|ref|YP_659045.1| - 4.2e-07 29.6 0.0 8.4e-07 28.6 0.0 1.5 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.1 gi|110669234|ref|YP_659045.1| - 7.7e-05 22.7 0.0 0.00021 21.3 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|110669234|ref|YP_659045.1| - 0.00025 20.5 0.0 0.00051 19.5 0.0 1.5 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda TIM PF00121.13 gi|110669235|ref|YP_659046.1| - 5.2e-22 78.1 0.3 2.3e-15 56.3 0.0 2.0 1 1 1 2 2 2 2 Triosephosphate isomerase ThiG PF05690.9 gi|110669235|ref|YP_659046.1| - 0.0021 17.1 0.8 0.0021 17.1 0.6 2.0 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Hydrolase_like PF13242.1 gi|110669235|ref|YP_659046.1| - 0.015 14.9 0.8 0.03 14.0 0.1 1.9 2 0 0 2 2 2 0 HAD-hyrolase-like FMN_dh PF01070.13 gi|110669235|ref|YP_659046.1| - 0.033 13.0 2.6 0.047 12.5 1.6 1.5 1 1 0 1 1 1 0 FMN-dependent dehydrogenase HTH_3 PF01381.17 gi|110669236|ref|YP_659047.1| - 8.7e-09 35.1 0.8 1.4e-08 34.4 0.6 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|110669236|ref|YP_659047.1| - 7e-08 32.5 0.5 1.1e-07 31.8 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|110669236|ref|YP_659047.1| - 1.2e-06 28.4 0.4 2.7e-06 27.3 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|110669236|ref|YP_659047.1| - 5.2e-05 22.7 1.9 8e-05 22.2 1.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain RAP1 PF07218.6 gi|110669236|ref|YP_659047.1| - 0.35 8.9 5.0 0.34 8.9 3.5 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) SSP160 PF06933.6 gi|110669236|ref|YP_659047.1| - 2.4 6.0 10.8 3.1 5.6 7.5 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 CDP-OH_P_transf PF01066.16 gi|110669237|ref|YP_659048.1| - 6.5e-12 45.6 9.6 2.3e-11 43.8 6.7 2.0 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase AAA_18 PF13238.1 gi|110669238|ref|YP_659049.1| - 5.4e-17 62.3 0.0 8.3e-17 61.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|110669238|ref|YP_659049.1| - 5.7e-09 36.8 0.1 9.5e-09 36.1 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|110669238|ref|YP_659049.1| - 0.0009 18.9 0.1 0.002 17.8 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|110669238|ref|YP_659049.1| - 0.011 15.8 0.2 0.016 15.3 0.2 1.6 1 1 0 1 1 1 0 AAA domain SKI PF01202.17 gi|110669238|ref|YP_659049.1| - 0.019 14.8 0.1 0.061 13.1 0.0 1.8 2 0 0 2 2 2 0 Shikimate kinase CPT PF07931.7 gi|110669238|ref|YP_659049.1| - 0.026 14.1 0.3 0.042 13.4 0.2 1.5 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein NTPase_1 PF03266.10 gi|110669238|ref|YP_659049.1| - 0.03 14.0 0.2 0.088 12.5 0.0 1.9 2 0 0 2 2 2 0 NTPase AAA_33 PF13671.1 gi|110669238|ref|YP_659049.1| - 0.037 13.8 1.0 0.31 10.8 0.7 2.5 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|110669238|ref|YP_659049.1| - 0.098 12.2 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|110669238|ref|YP_659049.1| - 0.14 11.2 0.0 3.9 6.5 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin AAA_28 PF13521.1 gi|110669238|ref|YP_659049.1| - 0.19 11.6 5.8 0.16 11.9 2.5 1.9 2 1 0 2 2 2 0 AAA domain AAA PF00004.24 gi|110669238|ref|YP_659049.1| - 0.29 11.3 1.9 1.2 9.3 0.9 2.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Aminotran_1_2 PF00155.16 gi|110669239|ref|YP_659050.1| - 8e-61 205.9 0.0 9.1e-61 205.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DUF3798 PF12683.2 gi|110669239|ref|YP_659050.1| - 0.0065 15.5 0.0 0.0097 15.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3798) Alliinase_C PF04864.8 gi|110669239|ref|YP_659050.1| - 0.01 14.5 0.0 0.019 13.6 0.0 1.4 1 0 0 1 1 1 0 Allinase Cys_Met_Meta_PP PF01053.15 gi|110669239|ref|YP_659050.1| - 0.018 13.3 0.0 0.041 12.1 0.0 1.5 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme FTR PF01913.13 gi|110669239|ref|YP_659050.1| - 0.041 13.6 0.1 0.098 12.3 0.1 1.6 1 0 0 1 1 1 0 Formylmethanofuran-tetrahydromethanopterin formyltransferase Vif PF00559.12 gi|110669239|ref|YP_659050.1| - 0.063 13.1 0.3 0.36 10.6 0.0 2.0 2 0 0 2 2 2 0 Retroviral Vif (Viral infectivity) protein GMC_oxred_C PF05199.8 gi|110669240|ref|YP_659051.1| - 3.3e-25 89.0 0.6 1e-24 87.4 0.4 1.9 1 1 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.14 gi|110669240|ref|YP_659051.1| - 3.5e-14 52.6 0.0 6.3e-14 51.8 0.0 1.4 1 0 0 1 1 1 1 GMC oxidoreductase DAO PF01266.19 gi|110669240|ref|YP_659051.1| - 2.4e-10 39.8 0.6 1.1e-06 27.8 0.0 2.7 3 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|110669240|ref|YP_659051.1| - 3.8e-09 35.9 0.2 0.00064 18.6 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.1 gi|110669240|ref|YP_659051.1| - 1.1e-06 28.6 0.0 3.7e-06 26.8 0.0 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|110669240|ref|YP_659051.1| - 5.9e-06 25.4 0.1 9.5e-06 24.7 0.0 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein Thi4 PF01946.12 gi|110669240|ref|YP_659051.1| - 8.3e-06 25.0 0.0 1.8e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.9 gi|110669240|ref|YP_659051.1| - 3.1e-05 23.9 0.0 0.0028 17.5 0.0 2.8 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|110669240|ref|YP_659051.1| - 0.00017 20.7 0.2 0.00072 18.7 0.0 1.9 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|110669240|ref|YP_659051.1| - 0.0007 18.1 0.2 0.0017 16.8 0.0 1.6 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|110669240|ref|YP_659051.1| - 0.007 16.4 0.0 0.021 14.8 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_7 PF12838.2 gi|110669240|ref|YP_659051.1| - 0.011 16.0 0.7 0.031 14.6 0.5 1.8 1 0 0 1 1 1 0 4Fe-4S dicluster domain 3HCDH_N PF02737.13 gi|110669240|ref|YP_659051.1| - 0.021 14.4 0.0 0.041 13.5 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|110669240|ref|YP_659051.1| - 0.024 14.0 0.0 0.068 12.6 0.0 1.8 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_9 PF13454.1 gi|110669240|ref|YP_659051.1| - 0.028 14.1 0.0 0.072 12.8 0.0 1.7 1 0 0 1 1 1 0 FAD-NAD(P)-binding GIDA PF01134.17 gi|110669240|ref|YP_659051.1| - 0.03 13.1 0.1 0.38 9.5 0.0 2.0 2 0 0 2 2 2 0 Glucose inhibited division protein A Shikimate_DH PF01488.15 gi|110669240|ref|YP_659051.1| - 0.037 14.1 0.0 0.063 13.3 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Gluconate_2-dh3 PF13618.1 gi|110669241|ref|YP_659052.1| - 8.3e-12 45.3 0.0 1.1e-11 44.9 0.0 1.2 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 TAT_signal PF10518.4 gi|110669241|ref|YP_659052.1| - 0.0052 16.6 0.5 0.015 15.2 0.3 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|110669241|ref|YP_659052.1| - 0.076 12.2 0.3 0.076 12.2 0.2 2.1 3 0 0 3 3 3 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal FAA_hydrolase PF01557.13 gi|110669242|ref|YP_659053.1| - 3.2e-64 216.3 0.1 4e-64 216.0 0.1 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Lactamase_B_3 PF13483.1 gi|110669243|ref|YP_659054.1| - 3.6e-23 82.0 1.3 4.7e-23 81.6 0.9 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|110669243|ref|YP_659054.1| - 9.2e-18 64.4 1.2 1.2e-17 64.1 0.8 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|110669243|ref|YP_659054.1| - 8.9e-12 45.0 9.0 2.1e-11 43.8 6.1 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily HTH_29 PF13551.1 gi|110669245|ref|YP_659056.1| - 6.3e-12 45.6 0.0 2.3e-11 43.8 0.0 1.9 1 1 1 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.1 gi|110669245|ref|YP_659056.1| - 2.3e-08 33.3 0.1 5.7e-07 28.9 0.0 2.4 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|110669245|ref|YP_659056.1| - 1.6e-07 30.7 0.0 3.3e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|110669245|ref|YP_659056.1| - 2.3e-07 31.4 0.2 6.7e-06 26.8 0.0 2.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|110669245|ref|YP_659056.1| - 0.00011 22.0 0.0 0.00023 21.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|110669245|ref|YP_659056.1| - 0.0085 15.6 0.3 4.7 6.8 0.0 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain LZ_Tnp_IS481 PF13011.1 gi|110669245|ref|YP_659056.1| - 0.034 14.4 0.1 0.078 13.3 0.0 1.5 2 0 0 2 2 2 0 leucine-zipper of insertion element IS481 HTH_7 PF02796.10 gi|110669245|ref|YP_659056.1| - 0.082 12.7 0.1 1.5 8.7 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_31 PF13560.1 gi|110669245|ref|YP_659056.1| - 0.1 12.7 0.1 0.25 11.5 0.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain DUF3665 PF12427.3 gi|110669245|ref|YP_659056.1| - 0.35 10.2 0.1 0.35 10.2 0.1 2.8 3 1 0 2 2 2 0 Branched-chain amino acid aminotransferase Hydrolase_6 PF13344.1 gi|110669246|ref|YP_659057.1| - 1.1e-21 76.6 0.0 2.1e-21 75.6 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|110669246|ref|YP_659057.1| - 4.5e-19 67.9 0.0 9.3e-19 66.9 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD_2 PF13419.1 gi|110669246|ref|YP_659057.1| - 1.1e-06 29.0 0.2 0.00018 21.7 0.0 2.7 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|110669246|ref|YP_659057.1| - 3.8e-06 27.4 1.2 3.4e-05 24.3 0.8 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.5 gi|110669246|ref|YP_659057.1| - 0.00032 20.0 0.1 0.001 18.4 0.1 1.9 1 0 0 1 1 1 1 Mitochondrial PGP phosphatase zf-TFIIB PF13453.1 gi|110669247|ref|YP_659058.1| - 0.0002 20.5 9.0 0.0098 15.0 1.4 3.1 2 1 1 3 3 3 1 Transcription factor zinc-finger zf-CHY PF05495.7 gi|110669247|ref|YP_659058.1| - 0.11 12.7 4.0 0.54 10.4 0.8 2.2 1 1 2 3 3 3 0 CHY zinc finger HypA PF01155.14 gi|110669247|ref|YP_659058.1| - 0.15 11.7 7.0 0.8 9.4 1.5 2.9 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|110669247|ref|YP_659058.1| - 0.16 11.7 7.4 3.8 7.4 5.1 2.7 1 1 0 1 1 1 0 Double zinc ribbon Stc1 PF12898.2 gi|110669247|ref|YP_659058.1| - 0.18 11.8 2.2 0.2 11.7 0.2 1.8 1 1 1 2 2 2 0 Stc1 domain zf-C4_Topoisom PF01396.14 gi|110669247|ref|YP_659058.1| - 0.23 10.9 7.3 7 6.2 0.0 3.6 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_5 PF13719.1 gi|110669247|ref|YP_659058.1| - 0.39 10.3 12.4 2.9 7.5 1.9 3.8 3 1 0 3 3 3 0 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|110669247|ref|YP_659058.1| - 0.65 9.8 8.3 3.7 7.4 3.1 2.6 1 1 1 2 2 2 0 zinc-ribbons RPA_interact_C PF14768.1 gi|110669247|ref|YP_659058.1| - 0.71 10.3 7.0 1.2 9.5 0.1 2.8 2 1 1 3 3 3 0 Replication protein A interacting C-terminal Zn_Tnp_IS1 PF03811.8 gi|110669247|ref|YP_659058.1| - 0.86 9.1 14.5 1.7 8.1 0.2 3.8 4 0 0 4 4 4 0 InsA N-terminal domain Opy2 PF09463.5 gi|110669247|ref|YP_659058.1| - 1 9.5 10.3 15 5.8 0.2 3.9 4 0 0 4 4 4 0 Opy2 protein OrfB_Zn_ribbon PF07282.6 gi|110669247|ref|YP_659058.1| - 1 9.0 9.5 0.29 10.8 0.8 2.6 1 1 2 3 3 3 0 Putative transposase DNA-binding domain zf-Di19 PF05605.7 gi|110669247|ref|YP_659058.1| - 1.2 9.3 6.8 30 4.8 1.6 3.3 2 1 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_4 PF13717.1 gi|110669247|ref|YP_659058.1| - 1.3 8.7 13.6 3.3 7.4 2.1 3.8 3 1 0 3 3 3 0 zinc-ribbon domain Mu-like_Com PF10122.4 gi|110669247|ref|YP_659058.1| - 1.4 8.0 6.4 17 4.5 0.2 3.1 2 1 1 3 3 3 0 Mu-like prophage protein Com zf-C3HC4_3 PF13920.1 gi|110669247|ref|YP_659058.1| - 1.6 8.4 9.7 40 3.9 4.0 3.0 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) IBR PF01485.16 gi|110669247|ref|YP_659058.1| - 1.8 8.4 8.7 2.7e+02 1.5 6.0 2.6 1 1 0 1 1 1 0 IBR domain DUF2387 PF09526.5 gi|110669247|ref|YP_659058.1| - 1.8 8.5 9.0 7.3 6.5 0.2 2.6 2 1 0 2 2 2 0 Probable metal-binding protein (DUF2387) zf-RING_3 PF14369.1 gi|110669247|ref|YP_659058.1| - 2.6 8.1 16.1 0.6 10.1 0.2 4.0 2 2 2 4 4 4 0 zinc-finger zf-RING_4 PF14570.1 gi|110669247|ref|YP_659058.1| - 3.2 7.4 7.3 27 4.4 1.7 3.1 3 1 0 3 3 3 0 RING/Ubox like zinc-binding domain zf-ribbon_3 PF13248.1 gi|110669247|ref|YP_659058.1| - 9.7 5.5 7.6 15 4.9 0.1 3.6 4 0 0 4 4 4 0 zinc-ribbon domain dCMP_cyt_deam_1 PF00383.17 gi|110669248|ref|YP_659059.1| - 1.3e-14 53.6 0.0 1.7e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.1 gi|110669248|ref|YP_659059.1| - 0.0086 15.7 0.0 0.011 15.3 0.0 1.2 1 0 0 1 1 1 1 MafB19-like deaminase XOO_2897-deam PF14440.1 gi|110669248|ref|YP_659059.1| - 0.073 12.7 0.1 0.097 12.3 0.1 1.2 1 0 0 1 1 1 0 Xanthomonas XOO_2897-like deaminase Bd3614-deam PF14439.1 gi|110669248|ref|YP_659059.1| - 0.15 11.9 0.3 0.3 10.9 0.2 1.5 1 1 0 1 1 1 0 Bd3614-like deaminase LTD PF00932.14 gi|110669249|ref|YP_659060.1| - 6.3e-21 74.6 4.0 6.3e-21 74.6 2.8 2.4 2 1 1 3 3 3 1 Lamin Tail Domain SNase PF00565.12 gi|110669249|ref|YP_659060.1| - 2.3e-18 66.4 0.0 3.7e-18 65.7 0.0 1.3 1 0 0 1 1 1 1 Staphylococcal nuclease homologue DUF4249 PF14054.1 gi|110669249|ref|YP_659060.1| - 0.0037 16.6 0.5 0.0037 16.6 0.3 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4249) BPD_transp_1 PF00528.17 gi|110669254|ref|YP_659065.1| - 1.1e-14 54.3 21.0 1.1e-14 54.3 14.6 2.4 1 1 2 3 3 3 2 Binding-protein-dependent transport system inner membrane component DUF1418 PF07214.7 gi|110669254|ref|YP_659065.1| - 3.4 7.3 6.6 1.1 8.8 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1418) BPD_transp_1 PF00528.17 gi|110669255|ref|YP_659066.1| - 1.6e-10 40.7 15.0 1.6e-10 40.7 10.4 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component FliP PF00813.15 gi|110669255|ref|YP_659066.1| - 1 8.9 10.0 0.12 12.0 0.8 2.5 2 1 1 3 3 3 0 FliP family ABC_tran PF00005.22 gi|110669256|ref|YP_659067.1| - 2.5e-35 121.7 0.0 4.5e-35 120.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110669256|ref|YP_659067.1| - 7.5e-12 45.7 0.0 6e-07 29.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|110669256|ref|YP_659067.1| - 5.8e-06 26.2 0.2 0.00028 20.8 0.0 3.2 2 1 1 3 3 3 1 TOBE domain AAA_17 PF13207.1 gi|110669256|ref|YP_659067.1| - 0.00034 21.4 0.0 0.00068 20.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|110669256|ref|YP_659067.1| - 0.00037 19.8 0.0 0.025 13.7 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|110669256|ref|YP_659067.1| - 0.00039 20.4 0.3 0.001 19.0 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|110669256|ref|YP_659067.1| - 0.001 19.1 0.2 0.0044 17.1 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|110669256|ref|YP_659067.1| - 0.0042 17.4 0.1 0.0093 16.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|110669256|ref|YP_659067.1| - 0.0055 16.9 0.4 0.033 14.3 0.3 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|110669256|ref|YP_659067.1| - 0.0066 16.4 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|110669256|ref|YP_659067.1| - 0.023 13.3 0.0 0.032 12.9 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DUF258 PF03193.11 gi|110669256|ref|YP_659067.1| - 0.024 13.8 0.0 0.048 12.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|110669256|ref|YP_659067.1| - 0.024 14.9 0.0 0.056 13.7 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_33 PF13671.1 gi|110669256|ref|YP_659067.1| - 0.031 14.1 0.0 0.07 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|110669256|ref|YP_659067.1| - 0.036 13.2 0.0 0.12 11.5 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|110669256|ref|YP_659067.1| - 0.042 13.5 0.0 0.096 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|110669256|ref|YP_659067.1| - 0.053 13.0 0.0 0.15 11.6 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain DAP10 PF07213.6 gi|110669256|ref|YP_659067.1| - 0.062 13.0 0.0 1.9 8.3 0.0 2.3 2 0 0 2 2 2 0 DAP10 membrane protein SBP_bac_8 PF13416.1 gi|110669257|ref|YP_659068.1| - 1.6e-16 60.9 0.0 2.1e-16 60.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|110669257|ref|YP_659068.1| - 5.9e-11 42.1 0.1 6.9e-10 38.6 0.1 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|110669257|ref|YP_659068.1| - 7.5e-10 39.0 0.1 1.4e-09 38.1 0.1 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Ribosomal_S10 PF00338.17 gi|110669258|ref|YP_659069.1| - 1.9e-28 98.1 0.0 2.1e-28 98.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|110669259|ref|YP_659070.1| - 1.4e-57 194.1 0.0 1.9e-57 193.7 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|110669259|ref|YP_659070.1| - 9e-31 105.9 0.1 3.5e-30 104.1 0.0 2.0 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|110669259|ref|YP_659070.1| - 8.6e-18 64.2 4.2 4.5e-17 61.9 1.4 2.6 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|110669259|ref|YP_659070.1| - 2e-07 30.9 0.0 3.9e-07 30.0 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.1 gi|110669259|ref|YP_659070.1| - 1.6e-06 27.6 0.1 5.9e-06 25.8 0.1 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Miro PF08477.8 gi|110669259|ref|YP_659070.1| - 4.3e-05 23.9 0.0 0.0012 19.2 0.0 2.9 2 1 0 2 2 2 1 Miro-like protein Gtr1_RagA PF04670.7 gi|110669259|ref|YP_659070.1| - 0.00073 18.7 0.0 0.074 12.1 0.0 2.2 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region SRPRB PF09439.5 gi|110669259|ref|YP_659070.1| - 0.018 14.2 0.0 0.5 9.5 0.0 2.2 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Dynamin_N PF00350.18 gi|110669259|ref|YP_659070.1| - 0.026 14.3 0.1 6.3 6.5 0.0 2.4 1 1 1 2 2 2 0 Dynamin family FeoB_N PF02421.13 gi|110669259|ref|YP_659070.1| - 0.029 13.6 0.2 0.48 9.6 0.1 2.5 2 1 0 2 2 2 0 Ferrous iron transport protein B Septin PF00735.13 gi|110669259|ref|YP_659070.1| - 0.086 11.8 0.0 0.2 10.6 0.0 1.5 1 0 0 1 1 1 0 Septin Hemolysin_N PF12563.3 gi|110669259|ref|YP_659070.1| - 0.15 11.5 0.1 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 Hemolytic toxin N terminal Homoserine_dh PF00742.14 gi|110669260|ref|YP_659071.1| - 1.7e-48 164.6 0.3 2.5e-48 164.0 0.2 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase ELFV_dehydrog PF00208.16 gi|110669260|ref|YP_659071.1| - 1.2e-09 38.0 0.1 3.5e-09 36.6 0.1 1.7 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_3 PF03447.11 gi|110669260|ref|YP_659071.1| - 0.0012 19.1 0.1 0.0027 18.0 0.1 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|110669260|ref|YP_659071.1| - 0.0031 16.6 0.0 0.0057 15.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|110669260|ref|YP_659071.1| - 0.013 15.4 1.0 0.026 14.5 0.7 1.6 1 0 0 1 1 1 0 NADH(P)-binding ApbA PF02558.11 gi|110669260|ref|YP_659071.1| - 0.02 14.3 0.0 0.033 13.6 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ACT PF01842.20 gi|110669261|ref|YP_659072.1| - 0.00045 19.6 0.1 0.0022 17.4 0.0 2.3 1 1 1 2 2 2 1 ACT domain GTP_EFTU PF00009.22 gi|110669262|ref|YP_659073.1| - 2.4e-60 203.2 0.5 3.9e-60 202.5 0.4 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|110669262|ref|YP_659073.1| - 6.1e-23 80.6 0.0 2.2e-22 78.8 0.0 2.0 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|110669262|ref|YP_659073.1| - 2.9e-22 78.2 0.4 2.9e-22 78.2 0.3 1.9 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|110669262|ref|YP_659073.1| - 3.4e-22 78.0 0.3 5.7e-21 74.1 0.0 2.9 3 0 0 3 3 3 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|110669262|ref|YP_659073.1| - 3.7e-14 52.5 1.2 2.8e-13 49.7 0.8 2.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|110669262|ref|YP_659073.1| - 2.5e-05 24.2 0.2 0.00014 21.8 0.0 2.3 2 0 0 2 2 2 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|110669262|ref|YP_659073.1| - 0.1 11.8 0.1 0.29 10.3 0.1 1.7 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Rnk_N PF14760.1 gi|110669263|ref|YP_659074.1| - 0.074 13.1 0.2 3.1 7.9 0.0 2.5 2 0 0 2 2 2 0 Rnk N-terminus DUF4157 PF13699.1 gi|110669263|ref|YP_659074.1| - 0.3 11.2 5.6 0.14 12.3 0.6 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4157) Ribosomal_S7 PF00177.16 gi|110669264|ref|YP_659075.1| - 6.7e-35 119.8 1.2 8.3e-35 119.5 0.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosom_S12_S23 PF00164.20 gi|110669265|ref|YP_659076.1| - 9.7e-41 138.0 0.1 1.1e-40 137.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.12 gi|110669266|ref|YP_659077.1| - 2.1e-13 49.6 0.0 4.9e-08 32.4 0.0 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|110669266|ref|YP_659077.1| - 1.7e-11 43.7 0.1 4.2e-11 42.4 0.0 1.7 2 0 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.24 gi|110669266|ref|YP_659077.1| - 3.2e-06 26.6 0.2 0.00046 19.7 0.0 2.3 1 1 1 2 2 2 2 KH domain KH_4 PF13083.1 gi|110669266|ref|YP_659077.1| - 0.00029 20.4 0.0 0.049 13.2 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|110669266|ref|YP_659077.1| - 0.0044 16.6 0.1 0.23 11.1 0.0 2.9 2 2 1 3 3 3 1 KH domain RNA_pol_Rpb1_5 PF04998.12 gi|110669267|ref|YP_659078.1| - 1e-41 143.0 0.9 7.8e-33 113.9 0.1 2.2 2 0 0 2 2 2 2 RNA polymerase Rpb1, domain 5 Spo0A_C PF08769.6 gi|110669267|ref|YP_659078.1| - 0.093 12.6 0.1 0.4 10.5 0.0 2.0 2 0 0 2 2 2 0 Sporulation initiation factor Spo0A C terminal DUF4355 PF14265.1 gi|110669267|ref|YP_659078.1| - 0.11 12.5 0.2 1.5 8.8 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4355) RNA_pol_Rpb1_1 PF04997.7 gi|110669268|ref|YP_659079.1| - 1.4e-87 294.1 0.0 2e-87 293.6 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|110669268|ref|YP_659079.1| - 3.4e-65 219.0 0.1 5.5e-65 218.3 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.12 gi|110669268|ref|YP_659079.1| - 1.2e-32 111.8 0.0 2.5e-32 110.8 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|110669268|ref|YP_659079.1| - 3.6e-29 101.9 0.0 6.2e-29 101.1 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_3 PF04983.13 gi|110669268|ref|YP_659079.1| - 1.4e-27 96.3 0.0 2.5e-27 95.5 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 HTH_3 PF01381.17 gi|110669268|ref|YP_659079.1| - 0.0092 15.8 0.0 0.023 14.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix Lar_restr_allev PF14354.1 gi|110669268|ref|YP_659079.1| - 0.13 12.5 0.7 0.84 9.9 0.1 2.3 2 0 0 2 2 2 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|110669268|ref|YP_659079.1| - 5 6.4 9.3 0.57 9.4 1.9 2.6 2 1 0 2 2 2 0 zinc-ribbon domain RNA_pol_Rpb2_6 PF00562.23 gi|110669269|ref|YP_659080.1| - 1.1e-122 409.4 0.0 2.1e-122 408.5 0.0 1.4 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_4 PF04566.8 gi|110669269|ref|YP_659080.1| - 2.2e-26 91.4 1.6 1.4e-25 88.8 0.9 2.4 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_7 PF04560.15 gi|110669269|ref|YP_659080.1| - 5.9e-26 90.5 0.1 2e-25 88.8 0.0 1.9 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_5 PF04567.12 gi|110669269|ref|YP_659080.1| - 4.3e-12 45.8 4.1 1.1e-11 44.4 2.8 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb2_1 PF04563.10 gi|110669270|ref|YP_659081.1| - 1.2e-53 181.1 0.0 1.5e-53 180.7 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|110669270|ref|YP_659081.1| - 4e-27 94.8 0.1 6e-27 94.2 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|110669270|ref|YP_659081.1| - 4.5e-23 80.7 0.0 8.7e-23 79.8 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb5_C PF01191.14 gi|110669271|ref|YP_659082.1| - 9e-26 89.2 0.4 9.9e-26 89.1 0.3 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF3006 PF11213.3 gi|110669271|ref|YP_659082.1| - 0.017 14.8 0.1 0.12 12.1 0.1 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3006) RIO1 PF01163.17 gi|110669272|ref|YP_659083.1| - 3.9e-61 205.6 0.0 7.4e-61 204.7 0.0 1.4 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|110669272|ref|YP_659083.1| - 8.2e-08 32.2 0.2 2.8e-05 23.9 0.0 2.6 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|110669272|ref|YP_659083.1| - 5.1e-06 25.8 0.0 1.7e-05 24.1 0.0 1.7 1 1 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|110669272|ref|YP_659083.1| - 1e-05 24.6 0.1 2.9e-05 23.2 0.1 1.6 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family WaaY PF06176.6 gi|110669272|ref|YP_659083.1| - 0.022 13.9 0.0 0.033 13.4 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Apolipo_F PF15148.1 gi|110669272|ref|YP_659083.1| - 0.12 11.6 0.0 0.19 11.0 0.0 1.2 1 0 0 1 1 1 0 Apolipoprotein F eIF-1a PF01176.14 gi|110669273|ref|YP_659084.1| - 1.9e-28 97.6 0.4 2.6e-28 97.2 0.3 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 tRNA-synt_1b PF00579.20 gi|110669274|ref|YP_659085.1| - 4.5e-44 150.7 0.0 5.6e-44 150.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|110669274|ref|YP_659085.1| - 0.017 13.8 0.0 3.4 6.2 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) tRNA-synt_1c PF00749.16 gi|110669274|ref|YP_659085.1| - 0.11 11.1 0.3 11 4.6 0.1 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (E and Q), catalytic domain PLDc_N PF13396.1 gi|110669275|ref|YP_659086.1| - 1.9e-06 27.4 3.8 1.9e-06 27.4 2.7 2.0 2 1 0 2 2 2 1 Phospholipase_D-nuclease N-terminal 7TMR-DISM_7TM PF07695.6 gi|110669275|ref|YP_659086.1| - 0.042 13.5 6.8 0.059 13.0 4.7 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling Herpes_LMP1 PF05297.6 gi|110669275|ref|YP_659086.1| - 0.33 9.8 5.9 0.42 9.4 4.1 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DUF460 PF04312.8 gi|110669276|ref|YP_659087.1| - 2.5e-48 163.0 1.1 2.2e-47 160.0 0.1 2.8 3 0 0 3 3 3 1 Protein of unknown function (DUF460) CENP-F_leu_zip PF10473.4 gi|110669276|ref|YP_659087.1| - 0.00076 19.3 17.2 0.00076 19.3 11.9 2.5 2 0 0 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 BLOC1_2 PF10046.4 gi|110669276|ref|YP_659087.1| - 0.0064 16.5 7.2 0.22 11.7 1.4 2.6 2 0 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 APG6 PF04111.7 gi|110669276|ref|YP_659087.1| - 0.0074 15.3 15.2 0.024 13.6 10.5 1.8 1 0 0 1 1 1 1 Autophagy protein Apg6 GAS PF13851.1 gi|110669276|ref|YP_659087.1| - 0.011 14.9 19.1 0.025 13.7 12.2 2.1 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding AAA_13 PF13166.1 gi|110669276|ref|YP_659087.1| - 0.015 13.7 9.4 0.025 13.0 6.5 1.2 1 0 0 1 1 1 0 AAA domain Nsp1_C PF05064.8 gi|110669276|ref|YP_659087.1| - 0.068 12.8 9.8 0.11 12.1 0.6 2.8 1 1 1 2 2 2 0 Nsp1-like C-terminal region V_ATPase_I PF01496.14 gi|110669276|ref|YP_659087.1| - 0.091 10.6 9.1 0.18 9.6 6.3 1.4 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Spc7 PF08317.6 gi|110669276|ref|YP_659087.1| - 0.098 11.3 16.2 0.069 11.8 9.3 1.9 1 1 1 2 2 2 0 Spc7 kinetochore protein Reo_sigmaC PF04582.7 gi|110669276|ref|YP_659087.1| - 0.13 11.3 0.6 0.32 10.1 0.4 1.5 1 1 0 1 1 1 0 Reovirus sigma C capsid protein SlyX PF04102.7 gi|110669276|ref|YP_659087.1| - 0.25 11.7 7.9 1.1 9.7 1.2 3.1 1 1 2 3 3 3 0 SlyX Laminin_II PF06009.7 gi|110669276|ref|YP_659087.1| - 0.28 10.9 8.5 1 9.1 5.7 2.1 1 1 0 1 1 1 0 Laminin Domain II TMF_DNA_bd PF12329.3 gi|110669276|ref|YP_659087.1| - 0.29 10.9 23.7 0.12 12.1 2.7 3.0 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding DivIC PF04977.10 gi|110669276|ref|YP_659087.1| - 0.44 10.0 14.7 0.93 9.0 0.9 3.2 1 1 0 2 2 2 0 Septum formation initiator HAUS-augmin3 PF14932.1 gi|110669276|ref|YP_659087.1| - 0.7 9.0 11.5 1.5 7.9 8.0 1.5 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 DUF342 PF03961.8 gi|110669276|ref|YP_659087.1| - 0.95 7.8 7.9 1.8 6.8 5.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF342) PspB PF06667.7 gi|110669276|ref|YP_659087.1| - 0.96 9.4 16.2 0.86 9.5 2.2 2.7 2 0 0 2 2 2 0 Phage shock protein B Prefoldin PF02996.12 gi|110669276|ref|YP_659087.1| - 1.3 8.6 8.2 0.59 9.7 0.7 2.9 3 0 0 3 3 3 0 Prefoldin subunit FlaC_arch PF05377.6 gi|110669276|ref|YP_659087.1| - 1.4 8.8 8.3 1.7 8.5 0.7 2.7 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF641 PF04859.7 gi|110669276|ref|YP_659087.1| - 2.5 7.8 18.0 0.032 14.0 2.6 3.0 2 1 1 3 3 3 0 Plant protein of unknown function (DUF641) DUF812 PF05667.6 gi|110669276|ref|YP_659087.1| - 3 6.2 23.4 0.86 8.0 12.7 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF812) Bacillus_HBL PF05791.6 gi|110669276|ref|YP_659087.1| - 5.9 6.2 8.5 5.1 6.4 1.2 2.3 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) TBPIP PF07106.8 gi|110669276|ref|YP_659087.1| - 6 6.3 15.2 11 5.5 1.4 2.4 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) IncA PF04156.9 gi|110669276|ref|YP_659087.1| - 8.4 5.9 24.9 0.094 12.2 11.3 2.2 2 0 0 2 2 2 0 IncA protein Spc24 PF08286.6 gi|110669276|ref|YP_659087.1| - 9.5 5.9 14.6 5.7 6.6 3.7 2.8 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Vac_Fusion PF02346.11 gi|110669276|ref|YP_659087.1| - 9.9 5.6 11.6 1.4 8.3 1.3 2.7 2 0 0 2 2 2 0 Chordopoxvirus fusion protein DUF1664 PF07889.7 gi|110669276|ref|YP_659087.1| - 10 5.9 7.4 13 5.6 3.6 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Lactamase_B_2 PF12706.2 gi|110669277|ref|YP_659088.1| - 1.2e-30 106.4 0.1 1.8e-30 105.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|110669277|ref|YP_659088.1| - 1.6e-17 63.8 1.3 6.1e-17 61.9 0.9 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|110669277|ref|YP_659088.1| - 0.0012 18.2 0.0 0.0022 17.3 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease DUF218 PF02698.12 gi|110669277|ref|YP_659088.1| - 0.071 12.6 0.3 0.11 11.9 0.2 1.2 1 0 0 1 1 1 0 DUF218 domain AAA PF00004.24 gi|110669279|ref|YP_659090.1| - 1.1e-10 41.7 0.0 5.6e-10 39.5 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|110669279|ref|YP_659090.1| - 1.9e-10 40.6 0.0 3.6e-10 39.7 0.0 1.5 1 1 0 1 1 1 1 DNA polymerase III, delta subunit AAA_16 PF13191.1 gi|110669279|ref|YP_659090.1| - 3.6e-08 33.6 0.4 6.4e-06 26.2 0.0 3.0 1 1 1 2 2 2 1 AAA ATPase domain Rep_fac_C PF08542.6 gi|110669279|ref|YP_659090.1| - 4.7e-08 32.9 0.0 1.7e-07 31.0 0.0 2.0 2 0 0 2 2 2 1 Replication factor C C-terminal domain AAA_22 PF13401.1 gi|110669279|ref|YP_659090.1| - 1.5e-06 28.3 0.0 8.1e-06 26.0 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|110669279|ref|YP_659090.1| - 2e-06 27.7 0.0 0.0001 22.2 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|110669279|ref|YP_659090.1| - 6.5e-05 22.6 0.0 0.00012 21.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|110669279|ref|YP_659090.1| - 0.00031 20.2 0.0 0.0021 17.5 0.0 2.0 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_11 PF13086.1 gi|110669279|ref|YP_659090.1| - 0.0016 18.1 0.1 0.0037 16.8 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|110669279|ref|YP_659090.1| - 0.0048 16.6 0.0 0.012 15.3 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|110669279|ref|YP_659090.1| - 0.0054 16.3 0.5 0.075 12.6 0.0 2.5 2 1 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.1 gi|110669279|ref|YP_659090.1| - 0.0064 16.5 0.0 0.54 10.2 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|110669279|ref|YP_659090.1| - 0.0095 15.0 0.3 2.3 7.1 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus DUF2075 PF09848.4 gi|110669279|ref|YP_659090.1| - 0.011 14.6 0.0 0.015 14.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) IstB_IS21 PF01695.12 gi|110669279|ref|YP_659090.1| - 0.015 14.7 0.0 0.035 13.5 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein DNA_pol3_delta PF06144.8 gi|110669279|ref|YP_659090.1| - 0.028 13.9 0.0 0.067 12.6 0.0 1.6 1 0 0 1 1 1 0 DNA polymerase III, delta subunit NACHT PF05729.7 gi|110669279|ref|YP_659090.1| - 0.028 14.0 0.0 0.11 12.1 0.0 2.0 2 1 0 2 2 1 0 NACHT domain Rad17 PF03215.10 gi|110669279|ref|YP_659090.1| - 0.029 13.0 0.0 3.4 6.2 0.0 2.2 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein AAA_5 PF07728.9 gi|110669279|ref|YP_659090.1| - 0.042 13.5 0.0 0.21 11.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|110669279|ref|YP_659090.1| - 0.05 12.3 0.0 4.9 5.7 0.0 2.1 2 0 0 2 2 2 0 TIP49 C-terminus AAA_18 PF13238.1 gi|110669279|ref|YP_659090.1| - 0.058 13.7 0.0 0.16 12.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|110669279|ref|YP_659090.1| - 0.069 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase NTPase_1 PF03266.10 gi|110669279|ref|YP_659090.1| - 0.075 12.7 0.0 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 NTPase ABC_tran PF00005.22 gi|110669279|ref|YP_659090.1| - 0.085 13.1 0.0 0.17 12.2 0.0 1.9 1 1 0 1 1 1 0 ABC transporter AAA_3 PF07726.6 gi|110669279|ref|YP_659090.1| - 0.1 12.2 0.0 1.7 8.2 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PS_Dcarbxylase PF02666.10 gi|110669280|ref|YP_659091.1| - 5e-27 94.5 0.0 2.8e-24 85.5 0.0 2.1 1 1 0 1 1 1 1 Phosphatidylserine decarboxylase UPF0020 PF01170.13 gi|110669281|ref|YP_659092.1| - 6.9e-26 90.9 0.0 1.1e-25 90.2 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|110669281|ref|YP_659092.1| - 2.7e-11 43.5 0.1 9e-11 41.8 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|110669281|ref|YP_659092.1| - 0.0013 18.1 0.0 0.0047 16.3 0.0 1.8 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.1 gi|110669281|ref|YP_659092.1| - 0.0052 17.1 0.0 0.015 15.6 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|110669281|ref|YP_659092.1| - 0.011 16.2 0.0 0.023 15.1 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|110669281|ref|YP_659092.1| - 0.018 15.6 0.1 0.043 14.3 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain THUMP PF02926.12 gi|110669281|ref|YP_659092.1| - 0.023 14.5 0.0 0.044 13.6 0.0 1.4 1 0 0 1 1 1 0 THUMP domain AviRa PF11599.3 gi|110669281|ref|YP_659092.1| - 0.036 13.0 0.1 1.9 7.4 0.0 2.2 1 1 1 2 2 2 0 RRNA methyltransferase AviRa TFIIB PF00382.14 gi|110669282|ref|YP_659093.1| - 3.8e-32 109.9 3.3 1.1e-15 57.1 0.0 2.6 3 0 0 3 3 3 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|110669282|ref|YP_659093.1| - 2e-11 43.0 2.0 5.2e-11 41.6 1.4 1.8 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|110669282|ref|YP_659093.1| - 0.00016 20.9 0.1 0.034 13.4 0.0 2.7 2 0 0 2 2 2 2 Sigma-70, region 4 DZR PF12773.2 gi|110669283|ref|YP_659094.1| - 0.041 13.6 2.5 0.067 13.0 1.7 1.3 1 0 0 1 1 1 0 Double zinc ribbon FYVE PF01363.16 gi|110669283|ref|YP_659094.1| - 0.058 13.3 1.5 0.11 12.4 1.2 1.3 1 1 0 1 1 1 0 FYVE zinc finger DUF2505 PF10698.4 gi|110669283|ref|YP_659094.1| - 0.077 12.4 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2505) HypA PF01155.14 gi|110669283|ref|YP_659094.1| - 0.1 12.3 2.7 0.16 11.7 1.8 1.5 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|110669283|ref|YP_659094.1| - 0.41 10.6 4.2 0.93 9.5 2.9 1.6 1 1 0 1 1 1 0 Zinc ribbon domain TBP PF00352.16 gi|110669284|ref|YP_659095.1| - 6.6e-64 211.2 0.0 1e-30 104.9 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|110669284|ref|YP_659095.1| - 0.0059 16.6 0.0 0.49 10.4 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF3378) CENP-F_C_Rb_bdg PF10490.4 gi|110669284|ref|YP_659095.1| - 0.039 13.2 0.6 8.8 5.7 0.0 2.2 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 DUF3773 PF12608.3 gi|110669284|ref|YP_659095.1| - 0.12 12.4 0.0 0.85 9.7 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3773) Chitin_synth_2 PF03142.10 gi|110669285|ref|YP_659096.1| - 1.2 7.4 6.9 1.2 7.3 4.8 1.0 1 0 0 1 1 1 0 Chitin synthase DAD PF02109.11 gi|110669285|ref|YP_659096.1| - 1.3 9.0 5.0 5.3 7.1 3.2 2.2 1 1 1 2 2 2 0 DAD family FixQ PF05545.6 gi|110669285|ref|YP_659096.1| - 2.6 7.7 6.9 1.1 8.9 0.1 2.5 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ DUF3753 PF12575.3 gi|110669285|ref|YP_659096.1| - 6.1 6.7 7.3 6.9 6.5 4.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3753) HisG PF01634.13 gi|110669286|ref|YP_659097.1| - 9.2e-48 161.8 0.1 1.4e-47 161.2 0.1 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|110669286|ref|YP_659097.1| - 1.1e-27 95.7 0.1 2e-27 94.9 0.1 1.5 1 0 0 1 1 1 1 HisG, C-terminal domain Amidohydro_1 PF01979.15 gi|110669287|ref|YP_659098.1| - 1.7e-45 156.1 5.6 2.1e-45 155.8 3.9 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|110669287|ref|YP_659098.1| - 1.1e-14 55.2 16.2 1.7e-14 54.5 11.2 1.3 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|110669287|ref|YP_659098.1| - 1.4e-10 40.8 0.4 7.4e-10 38.5 0.3 2.4 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|110669287|ref|YP_659098.1| - 6.6e-10 38.7 15.9 9.5e-09 34.9 6.7 2.2 1 1 1 2 2 2 2 Amidohydrolase family A_deaminase PF00962.17 gi|110669287|ref|YP_659098.1| - 0.00033 19.7 0.1 0.00063 18.7 0.0 1.5 1 0 0 1 1 1 1 Adenosine/AMP deaminase SHS2_FTSA PF02491.15 gi|110669287|ref|YP_659098.1| - 0.05 13.4 1.5 0.27 11.1 0.2 2.5 2 1 0 2 2 2 0 SHS2 domain inserted in FTSA AdoHcyase PF05221.12 gi|110669288|ref|YP_659099.1| - 1.1e-49 168.8 0.1 1.4e-49 168.4 0.1 1.1 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|110669288|ref|YP_659099.1| - 1e-48 165.2 0.8 1.8e-48 164.4 0.4 1.5 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|110669288|ref|YP_659099.1| - 7.1e-10 38.3 0.3 1.4e-09 37.3 0.2 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|110669288|ref|YP_659099.1| - 1.6e-06 27.5 0.5 5.5e-06 25.8 0.2 2.0 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|110669288|ref|YP_659099.1| - 0.0054 16.7 0.1 0.017 15.1 0.1 1.9 1 0 0 1 1 1 1 TrkA-N domain DUF3921 PF13060.1 gi|110669288|ref|YP_659099.1| - 0.04 13.7 0.1 0.095 12.5 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3921) 3HCDH_N PF02737.13 gi|110669288|ref|YP_659099.1| - 0.04 13.5 0.2 0.089 12.4 0.2 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sulfatase PF00884.18 gi|110669289|ref|YP_659100.1| - 3.1e-33 115.2 0.1 4.8e-33 114.6 0.1 1.3 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|110669289|ref|YP_659100.1| - 2e-07 30.6 0.1 0.0036 16.6 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase HAT PF02184.11 gi|110669289|ref|YP_659100.1| - 0.076 12.7 0.1 0.28 10.9 0.0 1.9 2 0 0 2 2 2 0 HAT (Half-A-TPR) repeat MgtE PF01769.11 gi|110669290|ref|YP_659101.1| - 1e-19 71.1 12.1 1e-19 71.1 8.4 1.3 2 0 0 2 2 2 1 Divalent cation transporter DUF697 PF05128.7 gi|110669290|ref|YP_659101.1| - 1.4 8.3 6.1 3.6 7.0 0.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF697) DUF4118 PF13493.1 gi|110669290|ref|YP_659101.1| - 3.1 8.0 15.6 3.9 7.7 3.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4118) MgtE PF01769.11 gi|110669291|ref|YP_659102.1| - 4e-17 62.7 11.6 4.4e-17 62.6 7.5 1.4 2 0 0 2 2 2 1 Divalent cation transporter TMEM141 PF15110.1 gi|110669291|ref|YP_659102.1| - 0.19 12.0 0.8 0.4 11.0 0.5 1.6 1 1 0 1 1 1 0 TMEM141 protein family DUF3816 PF12822.2 gi|110669291|ref|YP_659102.1| - 0.58 10.0 14.8 1 9.2 10.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3816) SRP54 PF00448.17 gi|110669292|ref|YP_659103.1| - 2.8e-62 209.6 0.1 5.5e-62 208.7 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|110669292|ref|YP_659103.1| - 7.9e-30 103.1 3.6 7.9e-30 103.1 2.5 2.9 2 1 1 3 3 3 1 Signal peptide binding domain SRP54_N PF02881.14 gi|110669292|ref|YP_659103.1| - 4.5e-16 58.7 0.6 1.2e-15 57.3 0.2 2.0 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|110669292|ref|YP_659103.1| - 0.0039 16.6 0.2 0.03 13.7 0.2 2.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.7 gi|110669292|ref|YP_659103.1| - 0.0041 16.2 0.0 0.0096 15.0 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_10 PF12846.2 gi|110669292|ref|YP_659103.1| - 0.0066 15.9 0.2 0.0099 15.3 0.1 1.4 1 1 0 1 1 1 1 AAA-like domain MobB PF03205.9 gi|110669292|ref|YP_659103.1| - 0.0094 15.6 0.0 0.024 14.3 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|110669292|ref|YP_659103.1| - 0.011 15.2 0.1 0.041 13.3 0.1 1.9 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain APS_kinase PF01583.15 gi|110669292|ref|YP_659103.1| - 0.013 15.1 0.1 0.039 13.6 0.0 1.9 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_25 PF13481.1 gi|110669292|ref|YP_659103.1| - 0.019 14.3 0.2 0.019 14.3 0.2 2.5 3 1 0 3 3 3 0 AAA domain ArsA_ATPase PF02374.10 gi|110669292|ref|YP_659103.1| - 0.021 13.8 3.0 0.099 11.6 0.1 2.4 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_33 PF13671.1 gi|110669292|ref|YP_659103.1| - 0.041 13.7 0.0 0.096 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|110669292|ref|YP_659103.1| - 0.045 13.8 0.2 0.23 11.6 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|110669292|ref|YP_659103.1| - 0.06 13.1 0.0 2.6 7.8 0.0 2.7 2 0 0 2 2 2 0 Part of AAA domain DUF4618 PF15397.1 gi|110669292|ref|YP_659103.1| - 0.068 12.4 1.9 0.41 9.9 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) SRPRB PF09439.5 gi|110669292|ref|YP_659103.1| - 0.092 11.9 0.1 5.1 6.2 0.0 2.4 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Thymidylate_kin PF02223.12 gi|110669292|ref|YP_659103.1| - 0.13 11.5 0.1 0.47 9.8 0.0 1.9 2 0 0 2 2 2 0 Thymidylate kinase KTI12 PF08433.5 gi|110669292|ref|YP_659103.1| - 0.14 11.3 0.0 0.27 10.3 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 SMC_N PF02463.14 gi|110669292|ref|YP_659103.1| - 0.15 11.2 0.0 0.27 10.4 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain SRP54 PF00448.17 gi|110669293|ref|YP_659104.1| - 2.5e-68 229.4 0.8 3.6e-68 228.8 0.5 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|110669293|ref|YP_659104.1| - 9.8e-13 48.0 0.2 2.7e-12 46.6 0.1 1.7 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|110669293|ref|YP_659104.1| - 2.6e-05 23.7 4.3 2.7e-05 23.6 1.1 2.2 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.14 gi|110669293|ref|YP_659104.1| - 2.8e-05 23.6 0.6 7.4e-05 22.2 0.4 1.6 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|110669293|ref|YP_659104.1| - 3.8e-05 22.8 0.1 8.9e-05 21.6 0.1 1.6 1 0 0 1 1 1 1 Zeta toxin APS_kinase PF01583.15 gi|110669293|ref|YP_659104.1| - 5.3e-05 22.9 0.0 9.6e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_16 PF13191.1 gi|110669293|ref|YP_659104.1| - 8.7e-05 22.5 1.0 0.00021 21.3 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain Thymidylate_kin PF02223.12 gi|110669293|ref|YP_659104.1| - 9.7e-05 21.8 0.1 0.0046 16.3 0.0 2.4 2 0 0 2 2 2 1 Thymidylate kinase MobB PF03205.9 gi|110669293|ref|YP_659104.1| - 0.00023 20.9 0.2 0.00083 19.0 0.2 2.0 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|110669293|ref|YP_659104.1| - 0.00045 20.3 0.0 0.0012 18.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|110669293|ref|YP_659104.1| - 0.00082 19.0 1.7 0.00082 19.0 1.2 2.0 2 1 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|110669293|ref|YP_659104.1| - 0.0019 17.9 0.1 0.0042 16.8 0.1 1.6 1 0 0 1 1 1 1 NTPase AAA_28 PF13521.1 gi|110669293|ref|YP_659104.1| - 0.0022 17.9 0.9 0.01 15.8 0.2 2.4 2 1 0 2 2 2 1 AAA domain KTI12 PF08433.5 gi|110669293|ref|YP_659104.1| - 0.0025 17.0 1.1 0.0036 16.5 0.0 1.8 2 0 0 2 2 2 1 Chromatin associated protein KTI12 ArgK PF03308.11 gi|110669293|ref|YP_659104.1| - 0.0095 14.7 0.6 0.021 13.6 0.3 1.7 1 1 0 1 1 1 1 ArgK protein AAA_19 PF13245.1 gi|110669293|ref|YP_659104.1| - 0.011 15.4 0.1 0.031 14.0 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain ATP_bind_1 PF03029.12 gi|110669293|ref|YP_659104.1| - 0.011 15.2 0.0 0.023 14.2 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein VirC1 PF07015.6 gi|110669293|ref|YP_659104.1| - 0.012 14.7 0.1 0.02 13.9 0.1 1.3 1 0 0 1 1 1 0 VirC1 protein AAA PF00004.24 gi|110669293|ref|YP_659104.1| - 0.015 15.4 0.4 0.11 12.7 0.1 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|110669293|ref|YP_659104.1| - 0.019 14.8 0.0 0.042 13.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain 6PF2K PF01591.13 gi|110669293|ref|YP_659104.1| - 0.025 13.6 0.0 0.04 12.9 0.0 1.3 1 0 0 1 1 1 0 6-phosphofructo-2-kinase AAA_17 PF13207.1 gi|110669293|ref|YP_659104.1| - 0.027 15.2 0.1 0.085 13.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|110669293|ref|YP_659104.1| - 0.05 13.5 0.0 0.15 11.9 0.0 1.8 1 1 1 2 2 2 0 AAA domain PPK2 PF03976.9 gi|110669293|ref|YP_659104.1| - 0.093 12.0 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) Viral_helicase1 PF01443.13 gi|110669293|ref|YP_659104.1| - 0.12 11.8 0.6 0.24 10.8 0.0 1.8 2 1 0 2 2 2 0 Viral (Superfamily 1) RNA helicase NACHT PF05729.7 gi|110669293|ref|YP_659104.1| - 0.13 11.9 0.1 0.27 10.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Podoplanin PF05808.6 gi|110669293|ref|YP_659104.1| - 1.6 8.3 10.7 3.6 7.1 7.4 1.6 1 0 0 1 1 1 0 Podoplanin DUF966 PF06136.8 gi|110669293|ref|YP_659104.1| - 8.2 5.7 10.0 13 5.1 6.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF966) Prefoldin PF02996.12 gi|110669294|ref|YP_659105.1| - 1.2e-24 86.2 7.2 1.2e-24 86.2 5.0 2.2 1 1 2 3 3 3 1 Prefoldin subunit TBPIP PF07106.8 gi|110669294|ref|YP_659105.1| - 2.2e-05 24.0 16.2 0.0033 16.9 0.4 2.1 2 0 0 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) IncA PF04156.9 gi|110669294|ref|YP_659105.1| - 2.3e-05 24.0 24.6 0.0028 17.2 4.6 2.1 2 0 0 2 2 2 2 IncA protein DUF641 PF04859.7 gi|110669294|ref|YP_659105.1| - 4.2e-05 23.3 13.2 0.0042 16.8 3.2 2.2 2 0 0 2 2 2 2 Plant protein of unknown function (DUF641) TSC22 PF01166.13 gi|110669294|ref|YP_659105.1| - 0.00012 21.9 18.6 0.00073 19.4 4.5 2.8 2 1 1 3 3 2 1 TSC-22/dip/bun family Fib_alpha PF08702.5 gi|110669294|ref|YP_659105.1| - 0.00013 22.1 14.2 0.087 12.9 5.9 2.3 2 0 0 2 2 2 2 Fibrinogen alpha/beta chain family CENP-F_leu_zip PF10473.4 gi|110669294|ref|YP_659105.1| - 0.00023 21.0 16.5 0.042 13.6 4.8 2.3 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Prefoldin_2 PF01920.15 gi|110669294|ref|YP_659105.1| - 0.00024 20.8 27.1 0.099 12.4 3.4 3.1 1 1 1 2 2 2 2 Prefoldin subunit DivIC PF04977.10 gi|110669294|ref|YP_659105.1| - 0.00031 20.1 3.0 0.00031 20.1 2.1 3.3 2 1 1 3 3 2 1 Septum formation initiator TMF_DNA_bd PF12329.3 gi|110669294|ref|YP_659105.1| - 0.00032 20.4 23.9 0.0053 16.5 6.3 2.7 2 1 0 2 2 2 1 TATA element modulatory factor 1 DNA binding GAS PF13851.1 gi|110669294|ref|YP_659105.1| - 0.00037 19.7 13.3 0.052 12.7 3.4 2.1 2 0 0 2 2 2 2 Growth-arrest specific micro-tubule binding BLOC1_2 PF10046.4 gi|110669294|ref|YP_659105.1| - 0.00046 20.2 16.9 0.021 14.9 1.7 2.6 2 1 1 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4618 PF15397.1 gi|110669294|ref|YP_659105.1| - 0.00056 19.3 13.1 0.009 15.3 3.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4618) DUF972 PF06156.8 gi|110669294|ref|YP_659105.1| - 0.00058 20.1 15.8 0.023 15.0 0.3 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF972) DUF812 PF05667.6 gi|110669294|ref|YP_659105.1| - 0.00074 18.1 17.9 0.025 13.0 1.4 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF812) Golgin_A5 PF09787.4 gi|110669294|ref|YP_659105.1| - 0.00076 18.1 3.0 0.00076 18.1 2.1 2.0 1 1 1 2 2 2 1 Golgin subfamily A member 5 MAD PF05557.8 gi|110669294|ref|YP_659105.1| - 0.00081 17.6 13.6 0.0013 16.9 9.5 1.3 1 1 0 1 1 1 1 Mitotic checkpoint protein ORF6C PF10552.4 gi|110669294|ref|YP_659105.1| - 0.00088 18.9 12.0 0.024 14.3 0.3 2.2 2 0 0 2 2 2 1 ORF6C domain AAA_13 PF13166.1 gi|110669294|ref|YP_659105.1| - 0.0011 17.5 15.3 0.0057 15.1 8.4 1.9 1 1 1 2 2 2 2 AAA domain bZIP_1 PF00170.16 gi|110669294|ref|YP_659105.1| - 0.0011 18.8 12.4 0.12 12.3 1.2 2.7 2 1 0 2 2 2 2 bZIP transcription factor Filament PF00038.16 gi|110669294|ref|YP_659105.1| - 0.0013 18.3 14.8 0.07 12.5 4.0 2.1 2 0 0 2 2 2 2 Intermediate filament protein LPP PF04728.8 gi|110669294|ref|YP_659105.1| - 0.0018 18.0 11.9 0.072 12.8 1.3 2.8 2 1 0 2 2 2 2 Lipoprotein leucine-zipper DUF342 PF03961.8 gi|110669294|ref|YP_659105.1| - 0.002 16.6 11.0 0.036 12.5 2.4 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF342) APG6 PF04111.7 gi|110669294|ref|YP_659105.1| - 0.002 17.2 21.1 0.046 12.7 6.4 2.0 2 0 0 2 2 2 2 Autophagy protein Apg6 PspA_IM30 PF04012.7 gi|110669294|ref|YP_659105.1| - 0.0021 17.4 20.7 0.015 14.6 7.7 2.1 2 0 0 2 2 2 1 PspA/IM30 family NPV_P10 PF05531.7 gi|110669294|ref|YP_659105.1| - 0.0022 18.1 21.3 0.13 12.5 3.4 2.7 2 2 0 2 2 2 2 Nucleopolyhedrovirus P10 protein Spc24 PF08286.6 gi|110669294|ref|YP_659105.1| - 0.0024 17.5 20.0 0.049 13.3 0.7 2.2 2 0 0 2 2 2 2 Spc24 subunit of Ndc80 FlxA PF14282.1 gi|110669294|ref|YP_659105.1| - 0.003 17.4 38.5 0.027 14.4 16.7 2.3 2 0 0 2 2 2 1 FlxA-like protein FliD_C PF07195.7 gi|110669294|ref|YP_659105.1| - 0.0032 16.8 13.0 0.0085 15.4 4.1 2.1 2 0 0 2 2 2 1 Flagellar hook-associated protein 2 C-terminus ketoacyl-synt PF00109.21 gi|110669294|ref|YP_659105.1| - 0.0045 16.4 0.2 0.015 14.8 0.0 1.7 2 0 0 2 2 1 1 Beta-ketoacyl synthase, N-terminal domain ADIP PF11559.3 gi|110669294|ref|YP_659105.1| - 0.0049 16.7 9.2 0.0049 16.7 6.4 2.1 2 0 0 2 2 2 1 Afadin- and alpha -actinin-Binding DUF4515 PF14988.1 gi|110669294|ref|YP_659105.1| - 0.0058 16.3 20.2 0.016 14.9 13.5 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4515) Lzipper-MIP1 PF14389.1 gi|110669294|ref|YP_659105.1| - 0.0061 16.6 13.9 0.013 15.5 3.1 2.3 2 0 0 2 2 2 1 Leucine-zipper of ternary complex factor MIP1 EzrA PF06160.7 gi|110669294|ref|YP_659105.1| - 0.0069 14.6 16.7 0.013 13.6 0.8 2.1 2 0 0 2 2 2 1 Septation ring formation regulator, EzrA Spectrin PF00435.16 gi|110669294|ref|YP_659105.1| - 0.007 16.6 18.2 0.18 12.0 2.0 2.3 2 0 0 2 2 2 2 Spectrin repeat DUF904 PF06005.7 gi|110669294|ref|YP_659105.1| - 0.0073 16.5 24.9 0.2 11.9 7.6 2.6 2 1 0 2 2 2 1 Protein of unknown function (DUF904) DUF4201 PF13870.1 gi|110669294|ref|YP_659105.1| - 0.0074 15.7 11.8 0.14 11.6 0.2 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4201) Allexi_40kDa PF05549.6 gi|110669294|ref|YP_659105.1| - 0.0076 15.5 5.5 0.51 9.5 1.3 2.1 2 0 0 2 2 2 1 Allexivirus 40kDa protein Spc7 PF08317.6 gi|110669294|ref|YP_659105.1| - 0.0077 14.9 16.3 0.063 11.9 1.4 2.1 2 0 0 2 2 2 2 Spc7 kinetochore protein TPR_MLP1_2 PF07926.7 gi|110669294|ref|YP_659105.1| - 0.0091 15.7 22.6 0.033 13.9 3.9 2.2 1 1 1 2 2 2 1 TPR/MLP1/MLP2-like protein TMF_TATA_bd PF12325.3 gi|110669294|ref|YP_659105.1| - 0.0092 15.7 18.6 0.1 12.3 2.6 2.2 2 0 0 2 2 2 2 TATA element modulatory factor 1 TATA binding AKNA PF12443.3 gi|110669294|ref|YP_659105.1| - 0.0092 15.9 17.1 0.083 12.9 0.7 2.2 2 0 0 2 2 2 1 AT-hook-containing transcription factor Cep57_MT_bd PF06657.8 gi|110669294|ref|YP_659105.1| - 0.0097 15.8 20.1 0.18 11.7 6.9 2.3 2 0 0 2 2 2 2 Centrosome microtubule-binding domain of Cep57 Laminin_II PF06009.7 gi|110669294|ref|YP_659105.1| - 0.01 15.5 12.3 0.12 12.0 0.9 2.2 2 0 0 2 2 2 0 Laminin Domain II DUF3450 PF11932.3 gi|110669294|ref|YP_659105.1| - 0.011 15.0 26.6 0.085 12.1 9.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Synaptobrevin PF00957.16 gi|110669294|ref|YP_659105.1| - 0.013 15.0 4.1 0.013 15.0 2.8 2.3 2 0 0 2 2 2 0 Synaptobrevin DUF4200 PF13863.1 gi|110669294|ref|YP_659105.1| - 0.014 15.3 4.9 0.014 15.3 3.4 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4200) Seryl_tRNA_N PF02403.17 gi|110669294|ref|YP_659105.1| - 0.015 15.2 14.1 0.36 10.8 1.7 2.5 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain CorA PF01544.13 gi|110669294|ref|YP_659105.1| - 0.015 14.3 16.2 0.037 13.0 0.4 2.1 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein Hemerythrin PF01814.18 gi|110669294|ref|YP_659105.1| - 0.015 15.4 2.5 1.4 9.0 0.1 2.2 2 0 0 2 2 2 0 Hemerythrin HHE cation binding domain Nnf1 PF03980.9 gi|110669294|ref|YP_659105.1| - 0.016 15.2 12.1 0.27 11.2 0.6 2.4 2 0 0 2 2 2 0 Nnf1 Uds1 PF15456.1 gi|110669294|ref|YP_659105.1| - 0.024 14.6 14.7 0.48 10.4 0.8 2.4 2 1 0 2 2 2 0 Up-regulated During Septation ATP-synt_D PF01813.12 gi|110669294|ref|YP_659105.1| - 0.026 14.1 8.2 0.12 11.9 2.0 2.1 2 0 0 2 2 2 0 ATP synthase subunit D DUF603 PF04645.7 gi|110669294|ref|YP_659105.1| - 0.026 14.4 2.4 2.7 7.9 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function, DUF603 COG2 PF06148.6 gi|110669294|ref|YP_659105.1| - 0.026 14.3 9.8 0.26 11.1 0.4 2.2 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Reo_sigmaC PF04582.7 gi|110669294|ref|YP_659105.1| - 0.027 13.6 9.5 0.1 11.7 0.4 2.0 1 1 1 2 2 2 0 Reovirus sigma C capsid protein HalX PF08663.5 gi|110669294|ref|YP_659105.1| - 0.032 14.2 16.5 0.22 11.4 2.8 2.9 2 1 0 2 2 2 0 HalX domain Cluap1 PF10234.4 gi|110669294|ref|YP_659105.1| - 0.04 13.1 14.8 0.038 13.2 3.4 2.1 2 0 0 2 2 2 0 Clusterin-associated protein-1 DUF4446 PF14584.1 gi|110669294|ref|YP_659105.1| - 0.043 13.6 10.9 0.69 9.7 2.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) DUF4337 PF14235.1 gi|110669294|ref|YP_659105.1| - 0.044 13.6 17.1 0.11 12.3 6.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) Tropomyosin_1 PF12718.2 gi|110669294|ref|YP_659105.1| - 0.052 13.3 25.0 0.61 9.9 3.0 2.3 2 0 0 2 2 2 0 Tropomyosin like Mnd1 PF03962.10 gi|110669294|ref|YP_659105.1| - 0.053 13.1 20.8 0.096 12.3 1.2 2.1 2 0 0 2 2 2 0 Mnd1 family DUF1664 PF07889.7 gi|110669294|ref|YP_659105.1| - 0.062 13.1 16.1 0.54 10.0 2.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Effector_1 PF04518.7 gi|110669294|ref|YP_659105.1| - 0.062 12.2 11.9 1.3 7.9 0.2 2.1 2 0 0 2 2 2 0 Effector from type III secretion system YlqD PF11068.3 gi|110669294|ref|YP_659105.1| - 0.063 13.3 26.5 0.17 11.9 8.8 2.6 2 1 0 2 2 2 0 YlqD protein Ax_dynein_light PF10211.4 gi|110669294|ref|YP_659105.1| - 0.074 12.8 20.8 0.49 10.2 7.4 2.1 2 0 0 2 2 2 0 Axonemal dynein light chain Phage_GP20 PF06810.6 gi|110669294|ref|YP_659105.1| - 0.074 12.4 20.7 0.53 9.7 2.5 2.3 2 0 0 2 2 2 0 Phage minor structural protein GP20 DUF2730 PF10805.3 gi|110669294|ref|YP_659105.1| - 0.076 12.7 8.8 1.1 9.0 0.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) CK2S PF15011.1 gi|110669294|ref|YP_659105.1| - 0.086 12.6 10.1 0.92 9.2 0.3 2.1 2 0 0 2 2 2 0 Casein Kinase 2 substrate IFT57 PF10498.4 gi|110669294|ref|YP_659105.1| - 0.098 11.3 16.5 0.36 9.5 5.1 2.1 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 DegS PF05384.6 gi|110669294|ref|YP_659105.1| - 0.1 11.7 9.6 0.5 9.5 0.5 2.2 2 0 0 2 2 2 0 Sensor protein DegS Vps51 PF08700.6 gi|110669294|ref|YP_659105.1| - 0.11 12.3 14.4 1.4 8.8 0.9 3.2 2 1 1 3 3 3 0 Vps51/Vps67 Syntaxin-6_N PF09177.6 gi|110669294|ref|YP_659105.1| - 0.11 12.8 14.5 1.3 9.4 4.2 2.5 2 1 0 2 2 2 0 Syntaxin 6, N-terminal HCMV_UL139 PF12507.3 gi|110669294|ref|YP_659105.1| - 0.12 12.5 6.9 4.6 7.4 0.1 2.1 2 0 0 2 2 2 0 Human Cytomegalovirus UL139 protein DUF4140 PF13600.1 gi|110669294|ref|YP_659105.1| - 0.13 12.7 20.9 0.59 10.6 3.4 2.7 1 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) EMP24_GP25L PF01105.19 gi|110669294|ref|YP_659105.1| - 0.15 11.8 13.4 0.73 9.5 2.7 2.2 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD DUF948 PF06103.6 gi|110669294|ref|YP_659105.1| - 0.15 11.9 13.1 1.5 8.7 0.7 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) COG5 PF10392.4 gi|110669294|ref|YP_659105.1| - 0.2 11.6 7.0 3.6 7.5 0.2 2.3 2 0 0 2 2 2 0 Golgi transport complex subunit 5 DUF607 PF04678.8 gi|110669294|ref|YP_659105.1| - 0.2 11.5 10.2 0.98 9.3 2.2 2.2 1 1 0 2 2 2 0 Protein of unknown function, DUF607 DUF2353 PF09789.4 gi|110669294|ref|YP_659105.1| - 0.22 10.7 13.4 0.4 9.8 9.3 1.4 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) DUF2130 PF09903.4 gi|110669294|ref|YP_659105.1| - 0.23 10.1 8.7 1.1 7.9 2.2 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2130) Baculo_PEP_C PF04513.7 gi|110669294|ref|YP_659105.1| - 0.23 11.2 17.1 0.52 10.1 1.4 2.1 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus STAT_alpha PF01017.15 gi|110669294|ref|YP_659105.1| - 0.24 11.1 20.7 1.2 8.8 0.8 2.1 2 0 0 2 2 2 0 STAT protein, all-alpha domain DUF2746 PF10874.3 gi|110669294|ref|YP_659105.1| - 0.24 11.6 9.9 0.33 11.1 0.7 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF2746) OmpH PF03938.9 gi|110669294|ref|YP_659105.1| - 0.24 11.3 28.6 0.82 9.5 2.8 2.1 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Prefoldin_3 PF13758.1 gi|110669294|ref|YP_659105.1| - 0.25 11.1 8.4 4.9 6.9 4.8 2.8 1 1 0 1 1 1 0 Prefoldin subunit PhoU PF01895.14 gi|110669294|ref|YP_659105.1| - 0.25 11.7 13.6 0.64 10.4 2.2 2.4 2 1 0 2 2 2 0 PhoU domain GrpE PF01025.14 gi|110669294|ref|YP_659105.1| - 0.26 10.8 17.9 0.93 9.0 1.1 2.2 2 0 0 2 2 2 0 GrpE Hemagglutinin PF00509.13 gi|110669294|ref|YP_659105.1| - 0.26 9.3 10.5 0.29 9.2 0.2 2.0 2 0 0 2 2 2 0 Haemagglutinin Mod_r PF07200.8 gi|110669294|ref|YP_659105.1| - 0.3 11.0 19.3 1.3 8.8 1.5 2.1 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein DivIVA PF05103.8 gi|110669294|ref|YP_659105.1| - 0.31 11.1 22.1 0.31 11.0 2.0 2.2 2 0 0 2 2 2 0 DivIVA protein DUF3375 PF11855.3 gi|110669294|ref|YP_659105.1| - 0.31 9.7 15.1 0.73 8.5 2.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3375) Sec34 PF04136.10 gi|110669294|ref|YP_659105.1| - 0.31 10.7 11.1 1.9 8.1 0.8 2.1 2 0 0 2 2 2 0 Sec34-like family FliJ PF02050.11 gi|110669294|ref|YP_659105.1| - 0.32 11.0 25.1 0.067 13.2 1.4 2.5 2 1 0 2 2 2 0 Flagellar FliJ protein Tektin PF03148.9 gi|110669294|ref|YP_659105.1| - 0.33 9.4 17.5 1 7.8 1.3 2.1 2 0 0 2 2 2 0 Tektin family Rootletin PF15035.1 gi|110669294|ref|YP_659105.1| - 0.34 10.8 17.3 1.4 8.8 5.0 2.1 2 0 0 2 2 2 0 Ciliary rootlet component, centrosome cohesion FlaC_arch PF05377.6 gi|110669294|ref|YP_659105.1| - 0.34 10.8 15.2 1.5 8.8 2.3 3.6 2 2 0 2 2 2 0 Flagella accessory protein C (FlaC) ATG16 PF08614.6 gi|110669294|ref|YP_659105.1| - 0.35 10.6 24.4 2.9 7.6 3.3 2.1 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) Occludin_ELL PF07303.8 gi|110669294|ref|YP_659105.1| - 0.36 11.5 11.9 1.5 9.6 0.7 2.3 2 0 0 2 2 2 0 Occludin homology domain SYCE1 PF15233.1 gi|110669294|ref|YP_659105.1| - 0.42 10.5 17.7 0.68 9.8 2.6 2.3 2 0 0 2 2 2 0 Synaptonemal complex central element protein 1 NTR2 PF15458.1 gi|110669294|ref|YP_659105.1| - 0.45 9.6 22.3 0.58 9.3 4.5 2.4 2 0 0 2 2 2 0 Nineteen complex-related protein 2 Nsp1_C PF05064.8 gi|110669294|ref|YP_659105.1| - 0.47 10.1 20.8 0.99 9.0 6.7 2.4 2 0 0 2 2 2 0 Nsp1-like C-terminal region Not3 PF04065.10 gi|110669294|ref|YP_659105.1| - 0.47 9.6 17.1 0.43 9.8 5.6 2.1 2 0 0 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component DUF3552 PF12072.3 gi|110669294|ref|YP_659105.1| - 0.5 9.5 23.9 0.42 9.7 8.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) Bap31 PF05529.7 gi|110669294|ref|YP_659105.1| - 0.5 9.7 13.7 1.8 7.9 3.6 2.2 2 0 0 2 2 2 0 B-cell receptor-associated protein 31-like HemX PF04375.9 gi|110669294|ref|YP_659105.1| - 0.51 8.8 23.6 0.96 7.9 2.5 2.2 1 1 0 2 2 2 0 HemX Fzo_mitofusin PF04799.8 gi|110669294|ref|YP_659105.1| - 0.52 9.6 13.3 2 7.7 3.3 2.1 2 0 0 2 2 2 0 fzo-like conserved region Sas10_Utp3 PF04000.10 gi|110669294|ref|YP_659105.1| - 0.56 10.4 11.2 0.56 10.4 0.7 2.6 2 1 0 2 2 2 0 Sas10/Utp3/C1D family AAA_27 PF13514.1 gi|110669294|ref|YP_659105.1| - 0.6 7.7 20.5 1.6 6.3 14.2 1.6 1 1 0 1 1 1 0 AAA domain Dor1 PF04124.7 gi|110669294|ref|YP_659105.1| - 0.65 8.3 14.6 0.82 8.0 0.9 2.1 2 0 0 2 2 2 0 Dor1-like family DUF1515 PF07439.6 gi|110669294|ref|YP_659105.1| - 0.67 9.7 11.9 0.17 11.6 0.8 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF1515) Rop-like PF05082.8 gi|110669294|ref|YP_659105.1| - 0.67 9.4 5.8 1.4 8.4 0.6 2.9 2 1 0 2 2 2 0 Rop-like Med9 PF07544.8 gi|110669294|ref|YP_659105.1| - 0.7 9.6 17.6 0.057 13.1 3.3 2.5 2 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Tup_N PF08581.5 gi|110669294|ref|YP_659105.1| - 0.83 9.8 18.7 2.5 8.3 5.7 2.5 2 0 0 2 2 2 0 Tup N-terminal FliD_N PF02465.13 gi|110669294|ref|YP_659105.1| - 0.85 10.0 0.1 0.85 10.0 0.0 3.1 2 1 1 3 3 2 0 Flagellar hook-associated protein 2 N-terminus Macoilin PF09726.4 gi|110669294|ref|YP_659105.1| - 0.86 7.8 19.3 0.087 11.1 6.8 1.7 1 1 1 2 2 2 0 Transmembrane protein DUF2935 PF11155.3 gi|110669294|ref|YP_659105.1| - 0.89 9.6 4.4 23 5.0 1.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF2935) Tmemb_cc2 PF10267.4 gi|110669294|ref|YP_659105.1| - 0.95 7.9 14.0 0.68 8.4 1.1 2.1 2 0 0 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein LUC7 PF03194.10 gi|110669294|ref|YP_659105.1| - 1 8.8 19.9 5.2e+02 -0.1 13.8 2.1 1 1 0 1 1 1 0 LUC7 N_terminus HALZ PF02183.13 gi|110669294|ref|YP_659105.1| - 1.1 9.0 13.0 4.3 7.1 2.3 2.9 2 1 0 2 2 2 0 Homeobox associated leucine zipper Lectin_N PF03954.9 gi|110669294|ref|YP_659105.1| - 1.1 8.6 11.1 1.8 7.9 3.6 2.1 2 0 0 2 2 2 0 Hepatic lectin, N-terminal domain Potyvirid-P3 PF13608.1 gi|110669294|ref|YP_659105.1| - 1.1 8.2 11.1 0.089 11.9 0.2 2.0 2 0 0 2 2 2 0 Protein P3 of Potyviral polyprotein Hormone_1 PF00103.15 gi|110669294|ref|YP_659105.1| - 1.3 8.3 7.7 1.9 7.8 2.5 2.0 2 0 0 2 2 2 0 Somatotropin hormone family DUF3373 PF11853.3 gi|110669294|ref|YP_659105.1| - 1.3 7.4 17.5 0.8 8.1 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3373) TMCO5 PF14992.1 gi|110669294|ref|YP_659105.1| - 1.3 8.0 18.9 0.23 10.5 4.8 2.0 2 0 0 2 2 2 0 TMCO5 family DUF2232 PF09991.4 gi|110669294|ref|YP_659105.1| - 1.3 7.9 3.2 2.1 7.2 2.3 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2232) DASH_Dam1 PF08653.5 gi|110669294|ref|YP_659105.1| - 1.3 8.8 10.5 2.3 8.0 0.6 3.2 2 2 0 2 2 2 0 DASH complex subunit Dam1 DUF2205 PF10224.4 gi|110669294|ref|YP_659105.1| - 1.4 8.5 15.6 0.26 10.8 0.6 2.5 2 1 0 2 2 2 0 Predicted coiled-coil protein (DUF2205) Snapin_Pallidin PF14712.1 gi|110669294|ref|YP_659105.1| - 1.4 9.2 23.0 3.6 7.9 1.7 3.0 2 2 1 3 3 3 0 Snapin/Pallidin Cob_adeno_trans PF01923.13 gi|110669294|ref|YP_659105.1| - 1.5 8.5 10.9 2.3 7.9 2.9 2.6 1 1 1 2 2 2 0 Cobalamin adenosyltransferase MIS13 PF08202.6 gi|110669294|ref|YP_659105.1| - 1.5 7.7 16.4 4.5 6.2 11.4 1.6 1 1 0 1 1 1 0 Mis12-Mtw1 protein family Atg14 PF10186.4 gi|110669294|ref|YP_659105.1| - 1.5 7.6 21.0 0.66 8.8 1.8 2.0 1 1 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 P4Ha_N PF08336.6 gi|110669294|ref|YP_659105.1| - 1.6 8.5 11.8 6 6.6 3.0 2.5 2 0 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Transposase_22 PF02994.9 gi|110669294|ref|YP_659105.1| - 1.6 7.1 14.2 1.8 6.9 0.7 2.0 1 1 1 2 2 2 0 L1 transposable element DUF2514 PF10721.4 gi|110669294|ref|YP_659105.1| - 1.6 8.3 11.7 0.69 9.5 0.1 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2514) CCDC155 PF14662.1 gi|110669294|ref|YP_659105.1| - 1.8 8.0 28.6 2.7 7.5 4.6 2.1 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 ERM PF00769.14 gi|110669294|ref|YP_659105.1| - 1.8 8.0 24.0 4.9 6.6 8.6 2.1 1 1 1 2 2 2 0 Ezrin/radixin/moesin family DUF4164 PF13747.1 gi|110669294|ref|YP_659105.1| - 2.1 8.5 20.1 5 7.3 2.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) Adeno_PIX PF03955.9 gi|110669294|ref|YP_659105.1| - 2.2 8.8 9.7 4.5 7.8 2.5 2.4 2 0 0 2 2 2 0 Adenovirus hexon-associated protein (IX) Herpes_UL6 PF01763.11 gi|110669294|ref|YP_659105.1| - 2.2 6.3 14.2 0.37 8.9 5.5 1.9 1 1 1 2 2 2 0 Herpesvirus UL6 like HrpB7 PF09486.5 gi|110669294|ref|YP_659105.1| - 2.4 8.0 19.5 0.33 10.8 4.1 2.5 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) Pox_A_type_inc PF04508.7 gi|110669294|ref|YP_659105.1| - 2.5 8.1 8.5 2.7 8.0 2.0 2.8 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat V_ATPase_I PF01496.14 gi|110669294|ref|YP_659105.1| - 2.5 5.8 18.4 0.68 7.7 1.6 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family KLRAQ PF10205.4 gi|110669294|ref|YP_659105.1| - 2.7 8.0 16.9 2.5 8.1 5.8 2.2 2 0 0 2 2 2 0 Predicted coiled-coil domain-containing protein DUF1759 PF03564.10 gi|110669294|ref|YP_659105.1| - 2.7 7.8 6.3 5.1 6.8 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1759) DUF745 PF05335.8 gi|110669294|ref|YP_659105.1| - 2.7 7.4 15.9 2 7.8 0.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF745) IL2 PF00715.12 gi|110669294|ref|YP_659105.1| - 2.8 7.6 5.2 0.62 9.7 0.1 2.1 1 1 1 2 2 1 0 Interleukin 2 Cauli_AT PF03233.8 gi|110669294|ref|YP_659105.1| - 2.9 7.5 7.4 4.9 6.8 0.3 2.2 2 0 0 2 2 2 0 Aphid transmission protein DUF2120 PF09893.4 gi|110669294|ref|YP_659105.1| - 2.9 7.8 7.5 5.5 6.9 0.3 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2120) Nup54 PF13874.1 gi|110669294|ref|YP_659105.1| - 3 7.5 18.2 2 8.0 1.3 2.2 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 Syntaxin PF00804.20 gi|110669294|ref|YP_659105.1| - 3.2 7.9 24.6 72 3.6 17.0 2.2 1 1 0 1 1 1 0 Syntaxin Viral_P18 PF04521.8 gi|110669294|ref|YP_659105.1| - 3.3 7.1 13.2 9.6 5.6 4.8 2.5 2 1 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein Med4 PF10018.4 gi|110669294|ref|YP_659105.1| - 3.4 7.0 18.0 2.5 7.4 1.3 2.2 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Lge1 PF11488.3 gi|110669294|ref|YP_659105.1| - 3.4 7.9 13.6 4.8 7.4 2.1 2.5 2 1 0 2 2 2 0 Transcriptional regulatory protein LGE1 DASH_Spc34 PF08657.5 gi|110669294|ref|YP_659105.1| - 3.5 7.2 20.6 1.1 8.8 1.8 2.1 2 0 0 2 2 2 0 DASH complex subunit Spc34 DUF883 PF05957.8 gi|110669294|ref|YP_659105.1| - 3.5 8.0 11.1 3.9 7.9 2.7 2.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) CENP-H PF05837.7 gi|110669294|ref|YP_659105.1| - 3.9 7.7 21.7 6.5 6.9 7.6 2.7 2 1 0 2 2 2 0 Centromere protein H (CENP-H) CCDC-167 PF15188.1 gi|110669294|ref|YP_659105.1| - 4.4 7.3 12.1 4.5 7.2 2.4 2.8 2 1 0 2 2 2 0 Coiled-coil domain-containing protein 167 SlyX PF04102.7 gi|110669294|ref|YP_659105.1| - 4.8 7.6 30.2 3.6 8.0 4.0 2.4 2 0 0 2 2 2 0 SlyX Rho_Binding PF08912.6 gi|110669294|ref|YP_659105.1| - 5 7.4 17.3 0.69 10.2 4.6 2.7 2 1 0 2 2 2 0 Rho Binding HAUS6_N PF14661.1 gi|110669294|ref|YP_659105.1| - 5.2 6.3 17.5 3.2 7.0 0.4 2.1 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus DUF4391 PF14335.1 gi|110669294|ref|YP_659105.1| - 5.4 6.3 10.9 1.1 8.5 2.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4391) MscS_porin PF12795.2 gi|110669294|ref|YP_659105.1| - 5.4 6.2 38.7 6.8e+02 -0.7 26.8 2.1 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain PCRF PF03462.13 gi|110669294|ref|YP_659105.1| - 5.8 6.6 14.2 0.67 9.6 0.7 2.5 2 1 0 2 2 2 0 PCRF domain COG6 PF06419.6 gi|110669294|ref|YP_659105.1| - 5.8 4.9 17.9 3.1 5.8 1.6 2.0 2 0 0 2 2 2 0 Conserved oligomeric complex COG6 CENP-Q PF13094.1 gi|110669294|ref|YP_659105.1| - 5.9 6.8 23.1 1.9 8.4 7.0 2.2 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Tnp_P_element PF12017.3 gi|110669294|ref|YP_659105.1| - 6.5 5.9 11.9 6.7 5.8 3.0 2.2 2 0 0 2 2 2 0 Transposase protein DUF1192 PF06698.6 gi|110669294|ref|YP_659105.1| - 6.7 6.5 12.2 3.8 7.3 1.0 2.9 2 2 0 2 2 2 0 Protein of unknown function (DUF1192) DUF4407 PF14362.1 gi|110669294|ref|YP_659105.1| - 7.6 5.3 21.9 50 2.7 15.1 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) TMPIT PF07851.8 gi|110669294|ref|YP_659105.1| - 7.6 5.4 10.5 6.9 5.6 0.1 2.0 2 0 0 2 2 2 0 TMPIT-like protein SPT16 PF08644.6 gi|110669294|ref|YP_659105.1| - 7.8 6.3 12.0 23 4.7 0.1 2.1 1 1 1 2 2 2 0 FACT complex subunit (SPT16/CDC68) Phasin PF05597.6 gi|110669294|ref|YP_659105.1| - 8.2 6.2 12.6 6.3 6.5 0.7 2.8 2 1 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) PRKCSH_1 PF13015.1 gi|110669294|ref|YP_659105.1| - 8.8 5.7 7.7 5.6 6.4 0.3 2.3 2 0 0 2 2 2 0 Glucosidase II beta subunit-like protein Peptidase_M16 PF00675.15 gi|110669294|ref|YP_659105.1| - 9 6.0 10.2 3.1 7.5 2.2 2.1 2 0 0 2 2 2 0 Insulinase (Peptidase family M16) DUF16 PF01519.11 gi|110669294|ref|YP_659105.1| - 9.4 6.5 18.1 7.5 6.8 2.8 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF16 Exonuc_VII_S PF02609.11 gi|110669294|ref|YP_659105.1| - 9.7 6.0 15.7 0.13 12.0 1.8 3.1 2 2 0 2 2 2 0 Exonuclease VII small subunit HR1 PF02185.11 gi|110669294|ref|YP_659105.1| - 9.9 5.9 22.4 0.23 11.2 1.8 3.1 2 1 0 2 2 1 0 Hr1 repeat Ribosomal_L18ae PF01775.12 gi|110669295|ref|YP_659106.1| - 1e-11 44.7 0.0 1.2e-11 44.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain eIF-6 PF01912.13 gi|110669296|ref|YP_659107.1| - 9.7e-70 233.7 0.2 1.3e-69 233.3 0.2 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.14 gi|110669297|ref|YP_659108.1| - 4.9e-27 93.4 0.0 6.1e-27 93.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.15 gi|110669298|ref|YP_659109.1| - 3.4e-21 74.4 7.3 4e-21 74.1 5.0 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein TPR_11 PF13414.1 gi|110669299|ref|YP_659110.1| - 7.2e-35 118.4 19.1 5.6e-12 45.1 1.1 3.2 1 1 3 4 4 4 4 TPR repeat TPR_1 PF00515.23 gi|110669299|ref|YP_659110.1| - 4.1e-25 86.2 0.4 2.5e-06 26.8 0.0 5.0 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|110669299|ref|YP_659110.1| - 4.4e-23 79.3 6.7 0.00027 20.6 0.1 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|110669299|ref|YP_659110.1| - 4.3e-17 61.8 10.8 2.1e-07 30.7 2.0 3.2 1 1 1 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|110669299|ref|YP_659110.1| - 3.7e-16 59.2 11.4 4.2e-10 40.0 0.7 3.3 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|110669299|ref|YP_659110.1| - 4.7e-16 57.2 0.0 0.0065 16.1 0.0 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|110669299|ref|YP_659110.1| - 1.1e-12 47.3 14.2 1.7e-05 25.0 0.3 4.9 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_9 PF13371.1 gi|110669299|ref|YP_659110.1| - 3.3e-12 46.0 3.3 9.1e-06 25.4 0.2 3.4 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|110669299|ref|YP_659110.1| - 4.4e-11 42.0 1.0 0.0018 18.2 0.0 4.7 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|110669299|ref|YP_659110.1| - 3.6e-10 38.8 7.5 0.0006 19.4 0.1 5.2 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|110669299|ref|YP_659110.1| - 1.1e-07 31.7 2.6 2.2 8.9 0.0 5.1 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|110669299|ref|YP_659110.1| - 1.1e-06 28.8 8.6 0.0079 16.5 0.1 3.3 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|110669299|ref|YP_659110.1| - 3.6e-05 23.5 15.5 0.031 14.2 0.3 4.7 5 0 0 5 5 5 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|110669299|ref|YP_659110.1| - 0.00014 21.9 0.0 0.56 10.3 0.0 2.4 1 1 1 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 DUF3856 PF12968.2 gi|110669299|ref|YP_659110.1| - 0.0004 20.2 11.0 0.023 14.4 0.5 4.1 1 1 2 3 3 3 1 Domain of Unknown Function (DUF3856) TPR_4 PF07721.9 gi|110669299|ref|YP_659110.1| - 0.00049 20.2 13.1 0.018 15.3 1.0 4.7 5 0 0 5 5 5 1 Tetratricopeptide repeat YfiO PF13525.1 gi|110669299|ref|YP_659110.1| - 0.00062 19.2 0.5 0.0021 17.5 0.1 1.9 1 1 1 2 2 2 1 Outer membrane lipoprotein Apc5 PF12862.2 gi|110669299|ref|YP_659110.1| - 0.0014 18.4 1.4 0.55 10.1 0.1 3.4 1 1 1 2 2 2 1 Anaphase-promoting complex subunit 5 TPR_20 PF14561.1 gi|110669299|ref|YP_659110.1| - 0.0029 17.6 3.4 0.36 10.9 0.1 3.1 1 1 2 3 3 3 1 Tetratricopeptide repeat TPR_18 PF13512.1 gi|110669299|ref|YP_659110.1| - 0.013 15.5 0.0 0.051 13.5 0.0 1.9 1 1 1 2 2 2 0 Tetratricopeptide repeat FAT PF02259.18 gi|110669299|ref|YP_659110.1| - 0.051 12.5 1.4 1.2 8.0 1.0 2.2 1 1 0 1 1 1 0 FAT domain TPR_5 PF12688.2 gi|110669299|ref|YP_659110.1| - 0.52 10.3 5.4 3.5 7.6 0.2 2.7 1 1 2 3 3 3 0 Tetratrico peptide repeat MIT PF04212.13 gi|110669299|ref|YP_659110.1| - 0.74 9.7 8.1 5.3 6.9 0.2 3.3 3 0 0 3 3 3 0 MIT (microtubule interacting and transport) domain DUF424 PF04242.8 gi|110669300|ref|YP_659111.1| - 9.4e-32 108.9 0.1 1.2e-31 108.5 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF424) Merozoite_SPAM PF07133.6 gi|110669300|ref|YP_659111.1| - 2 8.3 6.7 3 7.7 4.6 1.2 1 0 0 1 1 1 0 Merozoite surface protein (SPAM) Cwf_Cwc_15 PF04889.7 gi|110669300|ref|YP_659111.1| - 9.9 5.7 8.6 13 5.3 6.0 1.2 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein Aminotran_5 PF00266.14 gi|110669301|ref|YP_659112.1| - 1.1e-148 494.9 0.0 1.2e-148 494.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|110669301|ref|YP_659112.1| - 2e-11 43.4 0.0 1.4e-09 37.3 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|110669301|ref|YP_659112.1| - 4.1e-09 36.0 0.0 5.3e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|110669301|ref|YP_659112.1| - 2.1e-08 33.6 0.4 3.4e-08 32.9 0.3 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|110669301|ref|YP_659112.1| - 0.00056 18.3 0.0 0.00086 17.6 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.14 gi|110669301|ref|YP_659112.1| - 0.03 12.7 0.0 0.057 11.8 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain SelA PF03841.8 gi|110669301|ref|YP_659112.1| - 0.039 12.6 0.0 0.081 11.6 0.0 1.5 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase NifU_N PF01592.11 gi|110669302|ref|YP_659113.1| - 1.8e-27 95.7 0.1 2.2e-27 95.4 0.0 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain SufE PF02657.10 gi|110669302|ref|YP_659113.1| - 0.0071 15.9 0.0 0.0083 15.7 0.0 1.1 1 0 0 1 1 1 1 Fe-S metabolism associated domain Lip_prot_lig_C PF10437.4 gi|110669302|ref|YP_659113.1| - 0.092 12.4 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial lipoate protein ligase C-terminus TSCPD PF12637.2 gi|110669302|ref|YP_659113.1| - 0.14 12.1 0.1 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 TSCPD domain Rad51 PF08423.6 gi|110669303|ref|YP_659114.1| - 2.1e-75 252.9 0.0 5e-45 153.4 0.0 2.1 2 0 0 2 2 2 2 Rad51 HHH_5 PF14520.1 gi|110669303|ref|YP_659114.1| - 3.3e-11 43.2 0.0 9.2e-11 41.7 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain AAA_25 PF13481.1 gi|110669303|ref|YP_659114.1| - 5.5e-10 38.9 0.1 8.5e-10 38.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|110669303|ref|YP_659114.1| - 6e-07 28.8 0.0 0.0047 16.0 0.0 2.2 2 0 0 2 2 2 2 recA bacterial DNA recombination protein HHH PF00633.18 gi|110669303|ref|YP_659114.1| - 1.5e-05 24.3 0.1 0.011 15.3 0.0 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif KaiC PF06745.8 gi|110669303|ref|YP_659114.1| - 6.8e-05 22.0 0.0 0.00055 19.1 0.0 2.1 2 0 0 2 2 2 1 KaiC HHH_2 PF12826.2 gi|110669303|ref|YP_659114.1| - 0.0001 22.1 0.0 0.00031 20.5 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|110669303|ref|YP_659114.1| - 0.00011 22.0 0.0 0.00036 20.3 0.0 1.9 2 0 0 2 2 2 1 Pathogenicity locus AAA_22 PF13401.1 gi|110669303|ref|YP_659114.1| - 0.011 15.8 0.0 0.056 13.5 0.0 2.1 2 1 0 2 2 2 0 AAA domain IMS_HHH PF11798.3 gi|110669303|ref|YP_659114.1| - 0.032 14.2 0.0 0.14 12.2 0.0 2.2 2 0 0 2 2 2 0 IMS family HHH motif DNA_pol_lambd_f PF10391.4 gi|110669303|ref|YP_659114.1| - 0.052 13.0 0.0 0.24 10.9 0.0 2.2 1 1 1 2 2 2 0 Fingers domain of DNA polymerase lambda Peptidase_M48 PF01435.13 gi|110669305|ref|YP_659116.1| - 7.8e-41 140.0 0.0 1e-40 139.7 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|110669305|ref|YP_659116.1| - 5.8e-07 28.7 0.7 8.8e-06 24.8 0.0 2.2 2 0 0 2 2 2 1 BlaR1 peptidase M56 SprT-like PF10263.4 gi|110669305|ref|YP_659116.1| - 0.0022 17.6 0.0 0.0032 17.1 0.0 1.2 1 0 0 1 1 1 1 SprT-like family Tic20 PF09685.5 gi|110669305|ref|YP_659116.1| - 0.016 15.1 4.9 1.1 9.3 0.3 2.2 2 0 0 2 2 2 0 Tic20-like protein DUF420 PF04238.7 gi|110669305|ref|YP_659116.1| - 0.027 14.4 0.3 0.027 14.4 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF420) DUF3007 PF11460.3 gi|110669305|ref|YP_659116.1| - 0.071 13.1 0.1 0.17 11.9 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) Peptidase_MA_2 PF13485.1 gi|110669305|ref|YP_659116.1| - 0.12 12.4 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 Peptidase MA superfamily DUF2201_N PF13203.1 gi|110669305|ref|YP_659116.1| - 0.12 11.5 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 Putative metallopeptidase domain MENTAL PF10457.4 gi|110669305|ref|YP_659116.1| - 0.13 11.8 0.0 0.13 11.8 0.0 1.8 2 0 0 2 2 2 0 Cholesterol-capturing domain DUF1469 PF07332.6 gi|110669305|ref|YP_659116.1| - 0.36 10.5 4.0 1.4 8.6 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) OrfB_IS605 PF01385.14 gi|110669306|ref|YP_659117.1| - 1.7e-28 99.5 1.1 2.3e-28 99.1 0.7 1.1 1 0 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.3 gi|110669306|ref|YP_659117.1| - 5.6e-05 22.3 0.1 0.00012 21.3 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain IncFII_repA PF02387.10 gi|110669306|ref|YP_659117.1| - 0.02 14.0 1.3 0.034 13.3 0.2 1.7 2 0 0 2 2 2 0 IncFII RepA protein family NMD3 PF04981.8 gi|110669307|ref|YP_659118.1| - 9.3e-68 227.8 0.2 1.1e-67 227.5 0.1 1.1 1 0 0 1 1 1 1 NMD3 family Thioredoxin_2 PF13098.1 gi|110669307|ref|YP_659118.1| - 0.088 13.0 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin-like domain DZR PF12773.2 gi|110669307|ref|YP_659118.1| - 0.099 12.4 6.0 3.9 7.3 2.8 3.1 2 1 0 2 2 2 0 Double zinc ribbon zf-FPG_IleRS PF06827.9 gi|110669307|ref|YP_659118.1| - 0.14 11.7 11.8 0.61 9.7 1.2 4.1 3 1 0 3 3 3 0 Zinc finger found in FPG and IleRS FYVE PF01363.16 gi|110669307|ref|YP_659118.1| - 0.31 10.9 4.9 2.2 8.2 0.7 2.6 2 0 0 2 2 2 0 FYVE zinc finger zinc_ribbon_2 PF13240.1 gi|110669307|ref|YP_659118.1| - 0.4 10.2 5.3 4.6 6.8 0.1 3.4 3 0 0 3 3 3 0 zinc-ribbon domain DUF35_N PF12172.3 gi|110669307|ref|YP_659118.1| - 0.47 10.4 0.1 0.47 10.4 0.1 3.0 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.7 gi|110669307|ref|YP_659118.1| - 0.68 9.2 6.4 7.3 6.0 0.5 3.5 3 1 0 3 3 3 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|110669307|ref|YP_659118.1| - 0.8 8.9 9.5 3.3 7.0 0.1 3.5 4 0 0 4 4 4 0 zinc-ribbon domain DUF4193 PF13834.1 gi|110669307|ref|YP_659118.1| - 1.3 9.2 4.5 2.4 8.4 0.1 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4193) Rpr2 PF04032.11 gi|110669307|ref|YP_659118.1| - 1.3 8.9 4.7 1.6 8.6 0.0 2.9 2 1 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain GFA PF04828.9 gi|110669307|ref|YP_659118.1| - 1.7 8.6 5.1 17 5.4 0.0 3.1 2 1 0 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-NADH-PPase PF09297.6 gi|110669307|ref|YP_659118.1| - 7.8 6.1 9.4 3.2 7.3 0.1 3.2 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Helicase_C_2 PF13307.1 gi|110669308|ref|YP_659119.1| - 1.3e-20 73.9 0.0 2e-20 73.4 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|110669308|ref|YP_659119.1| - 6.3e-07 28.9 0.0 1.1e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|110669308|ref|YP_659119.1| - 0.00016 21.1 0.1 0.098 12.1 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|110669308|ref|YP_659119.1| - 0.0002 21.0 0.1 0.00059 19.5 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain ResIII PF04851.10 gi|110669308|ref|YP_659119.1| - 0.00021 21.1 0.0 0.042 13.6 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|110669308|ref|YP_659119.1| - 0.00089 19.4 0.0 0.008 16.3 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|110669308|ref|YP_659119.1| - 0.0022 17.6 0.4 1.3 8.5 0.1 2.3 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|110669308|ref|YP_659119.1| - 0.0062 16.0 0.1 2.4 7.4 0.0 2.4 2 0 0 2 2 2 2 AAA-like domain AAA_16 PF13191.1 gi|110669308|ref|YP_659119.1| - 0.012 15.5 0.8 0.14 12.1 0.0 2.9 3 1 1 4 4 4 0 AAA ATPase domain DXP_redisom_C PF08436.7 gi|110669308|ref|YP_659119.1| - 0.028 14.2 0.0 0.091 12.6 0.0 1.8 2 0 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal PhoH PF02562.11 gi|110669308|ref|YP_659119.1| - 0.18 10.9 0.0 0.38 9.9 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein Sigma54_activat PF00158.21 gi|110669308|ref|YP_659119.1| - 0.21 11.0 0.0 0.39 10.1 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain DUF4428 PF14471.1 gi|110669309|ref|YP_659120.1| - 0.055 13.2 0.3 0.093 12.4 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) PHP PF02811.14 gi|110669313|ref|YP_659124.1| - 3.3e-13 49.8 0.0 8.3e-13 48.4 0.0 1.6 1 1 0 1 1 1 1 PHP domain Rota_NSP3 PF01665.11 gi|110669313|ref|YP_659124.1| - 0.15 10.9 0.0 0.22 10.4 0.0 1.1 1 0 0 1 1 1 0 Rotavirus non-structural protein NSP3 SNARE_assoc PF09335.6 gi|110669314|ref|YP_659125.1| - 1.2e-10 41.7 1.5 1.7e-10 41.1 1.0 1.3 1 1 0 1 1 1 1 SNARE associated Golgi protein ALAD PF00490.16 gi|110669315|ref|YP_659126.1| - 1.3e-137 458.0 0.9 1.4e-137 457.9 0.6 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Ammonium_transp PF00909.16 gi|110669316|ref|YP_659127.1| - 2e-96 322.8 41.8 2.3e-96 322.6 29.0 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family PsbY PF06298.6 gi|110669316|ref|YP_659127.1| - 0.033 13.7 1.1 1.4 8.5 0.0 2.9 2 0 0 2 2 2 0 Photosystem II protein Y (PsbY) P-II PF00543.17 gi|110669317|ref|YP_659128.1| - 2.6e-32 111.3 0.0 3.1e-32 111.0 0.0 1.1 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Aminotran_3 PF00202.16 gi|110669319|ref|YP_659130.1| - 1e-64 218.5 0.0 1.3e-64 218.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|110669319|ref|YP_659130.1| - 0.0036 16.2 0.0 0.0086 15.0 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class I and II DDE_3 PF13358.1 gi|110669320|ref|YP_659131.1| - 4.7e-12 45.8 0.1 1.8e-11 43.9 0.0 1.9 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_33 PF13592.1 gi|110669320|ref|YP_659131.1| - 1.5e-07 30.8 0.0 3.8e-07 29.5 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix rve PF00665.21 gi|110669320|ref|YP_659131.1| - 5.2e-06 26.5 0.0 9.8e-06 25.6 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|110669320|ref|YP_659131.1| - 0.0002 20.5 0.0 0.00033 19.8 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_32 PF13565.1 gi|110669320|ref|YP_659131.1| - 0.00023 21.8 0.9 0.0083 16.9 0.0 2.7 3 0 0 3 3 3 1 Homeodomain-like domain HTH_29 PF13551.1 gi|110669320|ref|YP_659131.1| - 0.069 13.3 0.1 0.38 10.9 0.0 2.2 1 1 1 2 2 2 0 Winged helix-turn helix DUF3665 PF12427.3 gi|110669320|ref|YP_659131.1| - 2.7 7.4 5.6 0.4 10.1 0.1 2.5 2 1 0 2 2 2 0 Branched-chain amino acid aminotransferase Porphobil_deam PF01379.15 gi|110669321|ref|YP_659132.1| - 5.4e-60 201.9 0.7 3.2e-48 163.5 0.1 2.1 2 0 0 2 2 2 2 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|110669321|ref|YP_659132.1| - 2.7e-10 40.1 0.0 6.8e-10 38.9 0.0 1.7 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Uds1 PF15456.1 gi|110669321|ref|YP_659132.1| - 0.0048 16.8 1.7 0.0048 16.8 1.2 1.8 2 0 0 2 2 2 1 Up-regulated During Septation TP_methylase PF00590.15 gi|110669322|ref|YP_659133.1| - 3.3e-47 160.8 0.7 3.9e-47 160.6 0.5 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases HEM4 PF02602.10 gi|110669323|ref|YP_659134.1| - 1.4e-43 148.7 0.6 1.7e-43 148.4 0.4 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD DUF4538 PF15061.1 gi|110669324|ref|YP_659135.1| - 0.27 10.5 0.1 0.27 10.5 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4538) Tmemb_170 PF10190.4 gi|110669324|ref|YP_659135.1| - 2.2 8.4 6.1 4.9 7.2 4.2 1.6 1 0 0 1 1 1 0 Putative transmembrane protein 170 Cys_Met_Meta_PP PF01053.15 gi|110669325|ref|YP_659136.1| - 6.1e-136 452.7 0.0 6.9e-136 452.5 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|110669325|ref|YP_659136.1| - 3.9e-06 26.0 0.0 5.6e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|110669325|ref|YP_659136.1| - 1.9e-05 23.8 0.8 3.7e-05 22.9 0.5 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|110669325|ref|YP_659136.1| - 0.00011 21.0 1.1 0.00018 20.3 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|110669325|ref|YP_659136.1| - 0.0016 17.6 0.1 0.0029 16.8 0.1 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase SLA_LP_auto_ag PF05889.8 gi|110669325|ref|YP_659136.1| - 0.081 11.3 0.0 0.12 10.8 0.0 1.3 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) PHO4 PF01384.15 gi|110669326|ref|YP_659137.1| - 2.3e-72 243.3 28.2 3.1e-72 242.9 19.5 1.1 1 0 0 1 1 1 1 Phosphate transporter family Fer2 PF00111.22 gi|110669327|ref|YP_659138.1| - 7.2e-15 54.5 0.4 1.5e-14 53.4 0.2 1.5 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|110669327|ref|YP_659138.1| - 0.062 13.1 0.1 0.14 11.9 0.1 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Auto_anti-p27 PF06677.7 gi|110669328|ref|YP_659139.1| - 2.9e-18 65.3 0.7 4e-18 64.8 0.5 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) GFA PF04828.9 gi|110669328|ref|YP_659139.1| - 0.0039 17.1 2.0 0.086 12.7 0.0 2.6 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme DZR PF12773.2 gi|110669328|ref|YP_659139.1| - 0.0084 15.9 2.1 0.018 14.8 1.4 1.5 1 0 0 1 1 1 1 Double zinc ribbon DUF3279 PF11682.3 gi|110669328|ref|YP_659139.1| - 0.03 13.8 0.8 0.058 12.9 0.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3279) HypA PF01155.14 gi|110669328|ref|YP_659139.1| - 0.05 13.2 0.6 0.094 12.4 0.4 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS91 PF14319.1 gi|110669328|ref|YP_659139.1| - 0.051 13.0 1.1 0.11 11.9 0.7 1.6 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF605 PF04652.11 gi|110669328|ref|YP_659139.1| - 0.084 12.2 21.9 0.095 12.0 15.2 1.1 1 0 0 1 1 1 0 Vta1 like zf-FPG_IleRS PF06827.9 gi|110669328|ref|YP_659139.1| - 0.097 12.3 3.6 0.23 11.1 2.5 1.6 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS zf-dskA_traR PF01258.12 gi|110669328|ref|YP_659139.1| - 0.2 11.4 1.5 0.37 10.5 1.0 1.4 1 0 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger zf-ribbon_3 PF13248.1 gi|110669328|ref|YP_659139.1| - 0.6 9.4 2.9 1.2 8.4 2.0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain TFIIA PF03153.8 gi|110669328|ref|YP_659139.1| - 1.2 8.9 23.2 1.5 8.6 16.1 1.2 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit Macoilin PF09726.4 gi|110669328|ref|YP_659139.1| - 1.4 7.1 28.2 1.8 6.7 19.5 1.1 1 0 0 1 1 1 0 Transmembrane protein DUF2116 PF09889.4 gi|110669328|ref|YP_659139.1| - 2.1 8.2 4.6 4.1 7.2 0.7 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Ldh_1_N PF00056.18 gi|110669329|ref|YP_659140.1| - 8.6e-37 126.0 0.2 1.2e-36 125.6 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|110669329|ref|YP_659140.1| - 2e-33 115.5 0.0 3.1e-33 114.9 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Semialdhyde_dh PF01118.19 gi|110669329|ref|YP_659140.1| - 0.094 13.0 0.1 0.17 12.1 0.1 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DUF296 PF03479.10 gi|110669330|ref|YP_659141.1| - 7.3e-28 96.6 0.0 8.1e-28 96.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) PolC_DP2 PF03833.8 gi|110669331|ref|YP_659142.1| - 0 1272.2 0.2 0 1270.5 0.2 1.8 1 1 0 1 1 1 1 DNA polymerase II large subunit DP2 Hom_end PF05204.9 gi|110669331|ref|YP_659142.1| - 1.3e-05 25.0 0.6 1.1 9.2 0.0 4.0 3 0 0 3 3 3 2 Homing endonuclease LAGLIDADG_3 PF14528.1 gi|110669331|ref|YP_659142.1| - 0.0007 19.7 0.0 0.0066 16.6 0.0 2.7 3 0 0 3 3 3 1 LAGLIDADG-like domain Hint PF01079.15 gi|110669331|ref|YP_659142.1| - 0.0014 17.8 0.1 1.3 8.2 0.0 2.5 2 0 0 2 2 2 2 Hint module TerY-C PF15616.1 gi|110669331|ref|YP_659142.1| - 2.2 8.2 6.8 34 4.3 4.7 2.5 1 1 0 1 1 1 0 TerY-C metal binding domain HAD_2 PF13419.1 gi|110669333|ref|YP_659144.1| - 1.3e-14 54.8 0.4 1.6e-14 54.5 0.3 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|110669333|ref|YP_659144.1| - 1.4e-09 37.5 0.0 2.8e-09 36.5 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|110669333|ref|YP_659144.1| - 1.3e-05 25.6 0.0 0.00045 20.7 0.0 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Sulfatase PF00884.18 gi|110669334|ref|YP_659145.1| - 4.2e-45 154.2 0.7 5.7e-45 153.8 0.5 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|110669334|ref|YP_659145.1| - 4.3e-13 49.3 1.0 1.1e-05 24.9 0.1 2.4 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.7 gi|110669334|ref|YP_659145.1| - 0.11 11.3 1.4 0.17 10.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1501) DUF229 PF02995.12 gi|110669334|ref|YP_659145.1| - 0.22 9.9 0.0 0.27 9.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF229) NifU PF01106.12 gi|110669335|ref|YP_659146.1| - 3.7e-10 39.4 0.1 5.4e-10 38.8 0.1 1.3 1 1 0 1 1 1 1 NifU-like domain FliT PF05400.8 gi|110669336|ref|YP_659147.1| - 0.07 13.5 1.0 0.57 10.6 0.7 2.0 1 1 0 1 1 1 0 Flagellar protein FliT Inhibitor_I42 PF09394.5 gi|110669336|ref|YP_659147.1| - 0.1 12.9 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 Chagasin family peptidase inhibitor I42 EST1 PF10374.4 gi|110669336|ref|YP_659147.1| - 0.15 12.0 0.7 0.22 11.5 0.5 1.3 1 1 0 1 1 1 0 Telomerase activating protein Est1 Transglut_C PF00927.17 gi|110669337|ref|YP_659148.1| - 2.4e-15 56.4 6.4 0.043 13.8 0.0 7.3 7 1 1 8 8 8 5 Transglutaminase family, C-terminal ig like domain DUF1573 PF07610.6 gi|110669337|ref|YP_659148.1| - 2.9e-14 52.3 7.9 0.027 14.0 0.0 8.7 8 0 0 8 8 8 3 Protein of unknown function (DUF1573) PapD-like PF14874.1 gi|110669337|ref|YP_659148.1| - 5.9e-09 35.7 3.2 0.34 10.8 0.0 8.3 8 1 0 8 8 8 2 Flagellar-associated PapD-like Fn3-like PF14310.1 gi|110669337|ref|YP_659148.1| - 2.7e-05 24.0 2.0 2.1 8.3 0.0 5.6 4 0 0 4 4 4 2 Fibronectin type III-like domain EF-hand_7 PF13499.1 gi|110669337|ref|YP_659148.1| - 0.0036 17.4 11.0 0.1 12.7 0.5 2.9 2 0 0 2 2 2 2 EF-hand domain pair EF-hand_1 PF00036.27 gi|110669337|ref|YP_659148.1| - 0.02 14.1 26.4 0.33 10.3 0.3 5.5 4 1 1 5 5 5 0 EF hand YbaB_DNA_bd PF02575.11 gi|110669337|ref|YP_659148.1| - 0.09 12.6 0.3 4.4 7.2 0.0 3.6 3 0 0 3 3 3 0 YbaB/EbfC DNA-binding family MYCBPAP PF14646.1 gi|110669337|ref|YP_659148.1| - 1.2 7.8 0.0 51 2.3 0.0 3.0 3 0 0 3 3 3 0 MYCBP-associated protein family TRAP_beta PF05753.9 gi|110669337|ref|YP_659148.1| - 1.4 8.0 9.5 2 7.5 0.2 4.4 4 0 0 4 4 4 0 Translocon-associated protein beta (TRAPB) YmzC PF14157.1 gi|110669339|ref|YP_659150.1| - 0.044 13.6 2.1 0.16 11.7 0.3 2.9 2 0 0 2 2 2 0 YmzC-like protein Med15 PF09606.5 gi|110669339|ref|YP_659150.1| - 0.27 9.4 4.4 0.34 9.0 3.0 1.1 1 0 0 1 1 1 0 ARC105 or Med15 subunit of Mediator complex non-fungal DUF3244 PF11589.3 gi|110669339|ref|YP_659150.1| - 0.47 10.1 4.5 0.39 10.4 0.5 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3244) DDE_Tnp_1 PF01609.16 gi|110669340|ref|YP_659151.1| - 7.7e-12 45.2 0.0 1.1e-11 44.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|110669340|ref|YP_659151.1| - 0.00022 21.2 0.0 0.0013 18.7 0.0 2.1 3 0 0 3 3 3 1 Transposase DDE domain DUF4350 PF14258.1 gi|110669341|ref|YP_659152.1| - 0.00015 21.9 0.2 0.0028 17.8 0.0 2.8 3 1 0 3 3 3 1 Domain of unknown function (DUF4350) FGase PF05013.7 gi|110669341|ref|YP_659152.1| - 0.035 13.9 0.0 0.062 13.1 0.0 1.3 1 0 0 1 1 1 0 N-formylglutamate amidohydrolase AAA_3 PF07726.6 gi|110669342|ref|YP_659153.1| - 9.7e-62 206.3 0.3 2.4e-61 205.1 0.1 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|110669342|ref|YP_659153.1| - 9.8e-15 54.5 0.0 2.3e-14 53.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|110669342|ref|YP_659153.1| - 1e-06 27.7 0.1 3e-05 22.9 0.0 2.2 2 0 0 2 2 2 1 MCM2/3/5 family AAA PF00004.24 gi|110669342|ref|YP_659153.1| - 2.6e-06 27.6 0.0 6.8e-06 26.3 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|110669342|ref|YP_659153.1| - 8.2e-06 25.3 0.6 0.00023 20.7 0.1 2.6 2 1 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|110669342|ref|YP_659153.1| - 5.7e-05 22.3 0.6 0.0023 17.1 0.1 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|110669342|ref|YP_659153.1| - 0.001 19.1 0.1 0.0099 16.0 0.0 2.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|110669342|ref|YP_659153.1| - 0.002 18.1 0.8 0.0086 16.0 0.5 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|110669342|ref|YP_659153.1| - 0.0048 17.7 0.0 0.0095 16.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain DEAD PF00270.24 gi|110669342|ref|YP_659153.1| - 0.0061 16.0 0.0 0.023 14.1 0.0 2.0 2 1 0 2 2 2 1 DEAD/DEAH box helicase RuvB_N PF05496.7 gi|110669342|ref|YP_659153.1| - 0.016 14.2 0.0 0.098 11.6 0.0 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_18 PF13238.1 gi|110669342|ref|YP_659153.1| - 0.036 14.3 0.0 0.079 13.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|110669342|ref|YP_659153.1| - 0.052 12.6 0.6 0.19 10.8 0.1 1.9 2 0 0 2 2 2 0 KaiC AAA_19 PF13245.1 gi|110669342|ref|YP_659153.1| - 0.14 11.8 3.2 0.094 12.4 0.5 2.0 2 1 0 2 2 2 0 Part of AAA domain Acyl_transf_3 PF01757.17 gi|110669343|ref|YP_659154.1| - 0.02 13.7 3.8 0.021 13.6 2.6 1.1 1 0 0 1 1 1 0 Acyltransferase family Borrelia_P13 PF05628.7 gi|110669343|ref|YP_659154.1| - 0.093 12.5 0.0 0.21 11.3 0.0 1.6 1 1 1 2 2 2 0 Borrelia membrane protein P13 DUF4131 PF13567.1 gi|110669343|ref|YP_659154.1| - 0.73 9.2 3.5 0.88 8.9 2.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) YbgT_YccB PF08173.6 gi|110669343|ref|YP_659154.1| - 0.81 9.5 4.9 4.4 7.1 0.6 2.3 2 0 0 2 2 2 0 Membrane bound YbgT-like protein TrbC PF04956.8 gi|110669343|ref|YP_659154.1| - 0.84 9.6 3.2 1 9.3 2.2 1.3 1 0 0 1 1 1 0 TrbC/VIRB2 family MacB_PCD PF12704.2 gi|110669344|ref|YP_659155.1| - 1.6e-22 80.2 2.8 1.6e-22 80.2 1.9 2.0 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|110669344|ref|YP_659155.1| - 8.9e-13 48.0 19.6 1.7e-12 47.1 10.8 2.2 2 0 0 2 2 2 1 FtsX-like permease family FtsX PF02687.16 gi|110669345|ref|YP_659156.1| - 2.4e-14 53.1 14.6 5.1e-14 52.0 7.6 2.2 2 0 0 2 2 2 1 FtsX-like permease family MacB_PCD PF12704.2 gi|110669345|ref|YP_659156.1| - 6.9e-06 25.8 4.3 6.9e-06 25.8 3.0 1.8 2 0 0 2 2 2 1 MacB-like periplasmic core domain DUF4072 PF13284.1 gi|110669345|ref|YP_659156.1| - 0.13 12.4 2.3 1.2 9.3 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4072) NDUF_C2 PF06374.6 gi|110669345|ref|YP_659156.1| - 0.41 10.6 1.1 42 4.1 0.1 2.8 3 0 0 3 3 3 0 NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2) ABC_tran PF00005.22 gi|110669346|ref|YP_659157.1| - 1.3e-34 119.4 0.0 1.9e-34 118.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110669346|ref|YP_659157.1| - 1.2e-07 31.9 0.0 0.0063 16.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|110669346|ref|YP_659157.1| - 4.4e-05 23.7 0.0 0.0092 16.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|110669346|ref|YP_659157.1| - 0.00011 21.5 0.0 0.0008 18.6 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|110669346|ref|YP_659157.1| - 0.00028 20.3 0.1 0.00057 19.3 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|110669346|ref|YP_659157.1| - 0.0008 18.8 0.0 0.0014 18.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|110669346|ref|YP_659157.1| - 0.00087 19.3 1.7 0.0018 18.2 1.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|110669346|ref|YP_659157.1| - 0.00093 20.0 1.2 0.0019 19.0 0.9 1.9 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|110669346|ref|YP_659157.1| - 0.0019 17.4 0.0 0.0031 16.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|110669346|ref|YP_659157.1| - 0.0056 16.4 1.7 0.04 13.6 0.1 2.5 2 0 0 2 2 2 1 Part of AAA domain AAA_33 PF13671.1 gi|110669346|ref|YP_659157.1| - 0.0074 16.1 0.9 0.017 15.0 0.6 1.9 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|110669346|ref|YP_659157.1| - 0.0087 14.8 0.1 0.015 14.1 0.1 1.3 1 0 0 1 1 1 1 ArgK protein AAA_28 PF13521.1 gi|110669346|ref|YP_659157.1| - 0.0087 16.0 0.2 0.048 13.6 0.0 2.3 3 0 0 3 3 3 1 AAA domain NTPase_1 PF03266.10 gi|110669346|ref|YP_659157.1| - 0.0099 15.6 0.0 0.11 12.2 0.0 2.2 2 0 0 2 2 2 1 NTPase AAA_22 PF13401.1 gi|110669346|ref|YP_659157.1| - 0.01 16.0 0.1 0.023 14.8 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|110669346|ref|YP_659157.1| - 0.012 15.2 1.0 0.063 12.8 0.7 2.0 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|110669346|ref|YP_659157.1| - 0.023 14.1 0.1 0.032 13.6 0.0 1.4 1 1 0 1 1 1 0 AAA-like domain ParA PF10609.4 gi|110669346|ref|YP_659157.1| - 0.037 13.9 0.1 0.08 12.8 0.1 1.6 1 0 0 1 1 1 0 ParA/MinD ATPase like SRP54 PF00448.17 gi|110669346|ref|YP_659157.1| - 0.05 13.0 0.1 0.1 12.0 0.0 1.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Miro PF08477.8 gi|110669346|ref|YP_659157.1| - 0.058 13.8 0.0 0.2 12.1 0.0 1.8 2 0 0 2 2 2 0 Miro-like protein SbcCD_C PF13558.1 gi|110669346|ref|YP_659157.1| - 0.065 13.1 0.3 1.2 9.1 0.2 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit FtsK_SpoIIIE PF01580.13 gi|110669346|ref|YP_659157.1| - 0.067 12.6 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family MobB PF03205.9 gi|110669346|ref|YP_659157.1| - 0.09 12.4 0.1 0.25 11.0 0.0 1.8 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.12 gi|110669346|ref|YP_659157.1| - 0.1 12.0 0.2 4.7 6.5 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein MMR_HSR1 PF01926.18 gi|110669346|ref|YP_659157.1| - 0.1 12.5 0.1 0.16 11.9 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase Rad17 PF03215.10 gi|110669346|ref|YP_659157.1| - 0.12 11.0 0.0 0.16 10.6 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein TRCF PF03461.10 gi|110669347|ref|YP_659158.1| - 0.0016 18.3 1.4 0.0039 17.1 1.0 1.6 1 0 0 1 1 1 1 TRCF domain DASH_Dam1 PF08653.5 gi|110669347|ref|YP_659158.1| - 0.016 14.9 0.1 0.034 13.9 0.0 1.5 1 0 0 1 1 1 0 DASH complex subunit Dam1 Spc7 PF08317.6 gi|110669347|ref|YP_659158.1| - 0.018 13.7 3.3 0.033 12.8 2.3 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein Fe-S_assembly PF04384.8 gi|110669347|ref|YP_659158.1| - 0.054 13.8 0.1 0.18 12.1 0.1 1.9 1 0 0 1 1 1 0 Iron-sulphur cluster assembly Cir_Bir_Yir PF06022.6 gi|110669347|ref|YP_659158.1| - 0.085 12.0 1.9 0.17 11.0 1.3 1.4 1 0 0 1 1 1 0 Plasmodium variant antigen protein Cir/Yir/Bir Mnd1 PF03962.10 gi|110669347|ref|YP_659158.1| - 1.1 8.9 8.5 2.1 7.9 5.9 1.4 1 0 0 1 1 1 0 Mnd1 family Spore_III_AB PF09548.5 gi|110669347|ref|YP_659158.1| - 1.7 8.3 4.8 3.3 7.4 3.3 1.4 1 0 0 1 1 1 0 Stage III sporulation protein AB (spore_III_AB) DUF58 PF01882.13 gi|110669348|ref|YP_659159.1| - 3e-29 100.9 0.3 6.5e-29 99.9 0.2 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF1449 PF07290.6 gi|110669349|ref|YP_659160.1| - 0.012 14.9 2.1 0.012 14.9 1.5 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1449) DUF4564 PF15169.1 gi|110669349|ref|YP_659160.1| - 0.64 9.7 2.0 1.2 8.8 1.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4564) DUF2583 PF10762.4 gi|110669349|ref|YP_659160.1| - 6.6 6.9 7.6 0.6 10.2 0.7 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2583) Borrelia_P13 PF05628.7 gi|110669349|ref|YP_659160.1| - 8.2 6.2 6.9 1.1 9.0 0.2 2.2 1 1 1 2 2 2 0 Borrelia membrane protein P13 NUDIX PF00293.23 gi|110669351|ref|YP_659162.1| - 8e-18 64.3 0.1 1e-17 64.0 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_2 PF13869.1 gi|110669351|ref|YP_659162.1| - 0.0027 17.0 0.0 0.0034 16.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotide hydrolase OrfB_Zn_ribbon PF07282.6 gi|110669352|ref|YP_659163.1| - 2.3e-23 81.6 0.3 5.3e-23 80.4 0.2 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|110669352|ref|YP_659163.1| - 2.3e-14 53.3 0.0 3.3e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 Probable transposase DZR PF12773.2 gi|110669352|ref|YP_659163.1| - 0.028 14.2 2.2 0.028 14.2 1.5 2.1 3 0 0 3 3 3 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|110669352|ref|YP_659163.1| - 0.92 8.8 3.8 14 5.0 2.6 2.6 1 1 1 2 2 2 0 zinc-ribbon domain DUF457 PF04307.9 gi|110669353|ref|YP_659164.1| - 1.1e-13 50.8 10.3 1.3e-13 50.5 7.1 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF2798 PF11391.3 gi|110669353|ref|YP_659164.1| - 1.1 9.0 5.3 0.83 9.4 0.3 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2798) Resolvase PF00239.16 gi|110669354|ref|YP_659165.1| - 0.0022 17.8 0.0 0.0027 17.5 0.0 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain Antitoxin-MazE PF04014.13 gi|110669357|ref|YP_659168.1| - 3.3e-09 36.2 0.0 4.9e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE TMEM52 PF14979.1 gi|110669357|ref|YP_659168.1| - 0.14 12.0 0.0 0.15 11.9 0.0 1.0 1 0 0 1 1 1 0 Transmembrane 52 NTP_transf_2 PF01909.18 gi|110669359|ref|YP_659170.1| - 1.3e-12 47.8 0.1 2e-12 47.2 0.1 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain MarR_2 PF12802.2 gi|110669359|ref|YP_659170.1| - 0.0046 16.5 0.0 0.01 15.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|110669359|ref|YP_659170.1| - 0.0053 16.3 0.0 0.0097 15.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|110669359|ref|YP_659170.1| - 0.013 15.2 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|110669359|ref|YP_659170.1| - 0.015 14.6 0.0 0.028 13.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Antitoxin-MazE PF04014.13 gi|110669360|ref|YP_659171.1| - 8.9e-09 34.8 0.1 1.5e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PIN PF01850.16 gi|110669361|ref|YP_659172.1| - 1.7e-14 54.2 0.2 1.9e-14 54.0 0.2 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|110669361|ref|YP_659172.1| - 0.06 14.0 0.0 0.066 13.8 0.0 1.2 1 0 0 1 1 1 0 PIN domain HTH_40 PF14493.1 gi|110669362|ref|YP_659173.1| - 0.0022 18.1 0.1 0.0046 17.1 0.1 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain Bacillus_HBL PF05791.6 gi|110669362|ref|YP_659173.1| - 0.0024 17.2 0.8 0.0078 15.6 0.0 1.8 1 1 1 2 2 2 1 Bacillus haemolytic enterotoxin (HBL) HTH_20 PF12840.2 gi|110669362|ref|YP_659173.1| - 0.0026 17.5 0.1 0.0055 16.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|110669362|ref|YP_659173.1| - 0.004 16.8 0.0 0.0064 16.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Reovirus_cap PF00979.12 gi|110669362|ref|YP_659173.1| - 0.012 14.5 1.3 0.18 10.6 0.2 2.2 2 0 0 2 2 2 0 Reovirus outer capsid protein, Sigma 3 FaeA PF04703.7 gi|110669362|ref|YP_659173.1| - 0.016 15.3 0.2 0.028 14.5 0.1 1.4 1 0 0 1 1 1 0 FaeA-like protein HTH_IclR PF09339.5 gi|110669362|ref|YP_659173.1| - 0.02 14.4 0.0 0.038 13.5 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain MutS_I PF01624.15 gi|110669362|ref|YP_659173.1| - 0.023 14.7 0.1 0.048 13.7 0.0 1.6 2 0 0 2 2 2 0 MutS domain I DUF3071 PF11268.3 gi|110669362|ref|YP_659173.1| - 0.028 14.1 2.4 0.036 13.7 0.7 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3071) HTH_36 PF13730.1 gi|110669362|ref|YP_659173.1| - 0.084 13.0 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.16 gi|110669362|ref|YP_659173.1| - 0.17 11.3 0.6 1.1 8.7 0.1 2.4 1 1 1 2 2 2 0 Bacterial regulatory proteins, gntR family DUF2531 PF10748.4 gi|110669363|ref|YP_659174.1| - 0.11 11.6 0.5 0.17 11.0 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2531) DUF217 PF02697.9 gi|110669364|ref|YP_659175.1| - 1.4e-06 28.4 2.8 2e-06 27.9 1.9 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 EF-1_beta_acid PF10587.4 gi|110669364|ref|YP_659175.1| - 0.42 10.7 4.2 1.2 9.3 2.9 1.8 1 0 0 1 1 1 0 Eukaryotic elongation factor 1 beta central acidic region RNA_pol_Rpb2_4 PF04566.8 gi|110669364|ref|YP_659175.1| - 8.8 6.2 8.3 6 6.7 0.2 3.1 2 1 1 3 3 3 0 RNA polymerase Rpb2, domain 4 Glycos_transf_2 PF00535.21 gi|110669366|ref|YP_659177.1| - 1.6e-17 63.7 0.0 2.3e-17 63.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|110669366|ref|YP_659177.1| - 1.4e-10 41.3 0.0 1.8e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|110669366|ref|YP_659177.1| - 0.17 11.1 0.0 0.3 10.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 21 Neurensin PF14927.1 gi|110669366|ref|YP_659177.1| - 5.5 6.3 6.8 9.2 5.6 0.6 2.5 2 0 0 2 2 2 0 Neurensin DNA_pol3_beta_2 PF02767.11 gi|110669367|ref|YP_659178.1| - 0.078 13.0 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase III beta subunit, central domain DUF457 PF04307.9 gi|110669368|ref|YP_659179.1| - 6e-08 32.1 10.2 7.6e-08 31.8 7.1 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|110669368|ref|YP_659179.1| - 0.086 12.4 0.0 0.17 11.5 0.0 1.4 1 1 0 1 1 1 0 Zinc dependent phospholipase C NTP_transferase PF00483.18 gi|110669369|ref|YP_659180.1| - 3.5e-43 147.7 0.0 3.9e-43 147.5 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|110669369|ref|YP_659180.1| - 2e-15 57.2 0.0 2.3e-15 57.0 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|110669369|ref|YP_659180.1| - 4.1e-05 23.1 0.0 0.0012 18.4 0.0 2.2 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|110669369|ref|YP_659180.1| - 0.029 14.0 0.0 0.039 13.6 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 NUDIX PF00293.23 gi|110669370|ref|YP_659181.1| - 2.5e-15 56.3 0.0 2.8e-15 56.1 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain Nudix_N_2 PF14803.1 gi|110669370|ref|YP_659181.1| - 0.00016 21.2 4.3 0.00031 20.3 3.0 1.5 1 0 0 1 1 1 1 Nudix N-terminal DZR PF12773.2 gi|110669370|ref|YP_659181.1| - 0.0062 16.3 2.4 0.0091 15.7 1.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon GFA PF04828.9 gi|110669370|ref|YP_659181.1| - 0.035 14.0 4.9 0.11 12.4 0.2 2.8 2 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme RNA_POL_M_15KD PF02150.11 gi|110669370|ref|YP_659181.1| - 0.13 12.0 0.5 0.24 11.0 0.3 1.5 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.2 gi|110669370|ref|YP_659181.1| - 0.48 10.2 7.1 0.4 10.5 3.9 1.6 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|110669370|ref|YP_659181.1| - 2.5 7.8 8.6 4.7 6.9 6.0 1.4 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS zf-RING_3 PF14369.1 gi|110669370|ref|YP_659181.1| - 3.8 7.6 8.9 61 3.7 5.9 2.4 1 1 1 2 2 2 0 zinc-finger Epimerase PF01370.16 gi|110669371|ref|YP_659182.1| - 1.1e-45 155.9 0.2 1.4e-45 155.5 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|110669371|ref|YP_659182.1| - 3.2e-17 62.1 0.1 4.1e-17 61.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|110669371|ref|YP_659182.1| - 2.9e-08 33.9 0.1 4.3e-08 33.3 0.0 1.4 1 1 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|110669371|ref|YP_659182.1| - 1e-07 31.1 0.1 6.4e-06 25.2 0.1 2.4 2 1 0 2 2 2 1 Male sterility protein RmlD_sub_bind PF04321.12 gi|110669371|ref|YP_659182.1| - 2.9e-07 29.6 0.9 1.3e-06 27.5 0.6 1.9 1 1 0 1 1 1 1 RmlD substrate binding domain adh_short PF00106.20 gi|110669371|ref|YP_659182.1| - 1.3e-06 28.4 0.4 2.9e-06 27.2 0.2 1.7 1 1 0 1 1 1 1 short chain dehydrogenase Polysacc_synt_2 PF02719.10 gi|110669371|ref|YP_659182.1| - 3.7e-06 26.0 0.0 0.00061 18.7 0.0 2.3 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Epimerase_Csub PF13950.1 gi|110669371|ref|YP_659182.1| - 9.6e-05 22.2 0.2 0.00024 20.9 0.2 1.7 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit KR PF08659.5 gi|110669371|ref|YP_659182.1| - 0.011 15.3 0.0 0.025 14.2 0.0 1.6 1 0 0 1 1 1 0 KR domain Epimerase PF01370.16 gi|110669372|ref|YP_659183.1| - 5.1e-53 179.9 0.0 6.1e-53 179.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|110669372|ref|YP_659183.1| - 1.7e-14 53.1 0.0 2.2e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|110669372|ref|YP_659183.1| - 4.5e-12 46.3 0.0 7.3e-12 45.6 0.0 1.4 1 1 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|110669372|ref|YP_659183.1| - 1.3e-11 43.9 0.0 4.9e-10 38.7 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|110669372|ref|YP_659183.1| - 2e-11 43.2 0.7 4.1e-06 25.9 0.0 2.2 1 1 1 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.12 gi|110669372|ref|YP_659183.1| - 1.2e-05 24.3 0.0 3.6e-05 22.8 0.0 1.8 1 1 0 1 1 1 1 RmlD substrate binding domain adh_short PF00106.20 gi|110669372|ref|YP_659183.1| - 1.5e-05 25.0 0.2 4.8e-05 23.3 0.1 1.8 1 1 0 1 1 1 1 short chain dehydrogenase Epimerase_Csub PF13950.1 gi|110669372|ref|YP_659183.1| - 0.001 18.9 0.0 0.0022 17.8 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit KR PF08659.5 gi|110669372|ref|YP_659183.1| - 0.0041 16.7 0.2 0.013 15.1 0.1 1.8 1 1 0 1 1 1 1 KR domain NmrA PF05368.8 gi|110669372|ref|YP_659183.1| - 0.12 11.5 0.3 1.4 8.1 0.1 2.3 2 1 0 2 2 2 0 NmrA-like family DUF1163 PF06651.6 gi|110669372|ref|YP_659183.1| - 0.14 11.7 0.0 0.31 10.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1163) Methyltransf_21 PF05050.7 gi|110669374|ref|YP_659185.1| - 2.2e-18 66.7 0.1 3e-18 66.3 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_23 PF13489.1 gi|110669374|ref|YP_659185.1| - 0.088 12.5 0.0 0.17 11.5 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain RGP PF03214.8 gi|110669375|ref|YP_659186.1| - 1.4e-11 43.7 0.0 1.6e-11 43.5 0.0 1.0 1 0 0 1 1 1 1 Reversibly glycosylated polypeptide DUF288 PF03385.12 gi|110669375|ref|YP_659186.1| - 0.00098 17.6 0.0 0.0012 17.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF288 RdRP_1 PF00680.15 gi|110669375|ref|YP_659186.1| - 0.086 11.0 0.0 0.14 10.3 0.0 1.3 1 1 0 1 1 1 0 RNA dependent RNA polymerase His_Phos_1 PF00300.17 gi|110669379|ref|YP_659190.1| - 1.6e-34 119.2 0.2 2.3e-34 118.7 0.1 1.2 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) CTP_transf_3 PF02348.14 gi|110669380|ref|YP_659191.1| - 1.5e-28 99.9 0.0 1.9e-28 99.6 0.0 1.2 1 1 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.2 gi|110669380|ref|YP_659191.1| - 0.00024 21.2 0.0 0.00035 20.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|110669380|ref|YP_659191.1| - 0.0054 16.2 0.0 0.0081 15.6 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NeuB PF03102.9 gi|110669381|ref|YP_659192.1| - 9.8e-52 175.4 0.0 1.4e-51 174.9 0.0 1.2 1 0 0 1 1 1 1 NeuB family MAF_flag10 PF01973.13 gi|110669384|ref|YP_659195.1| - 3.7e-12 46.0 0.0 2e-05 24.2 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function DUF115 RGP PF03214.8 gi|110669385|ref|YP_659196.1| - 1.8e-18 66.4 0.0 3.8e-18 65.3 0.0 1.4 1 1 0 1 1 1 1 Reversibly glycosylated polypeptide DUF288 PF03385.12 gi|110669385|ref|YP_659196.1| - 0.0033 15.9 0.0 0.0048 15.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF288 DDE_Tnp_1 PF01609.16 gi|110669388|ref|YP_659199.1| - 2.4e-23 82.8 3.9 5.4e-23 81.6 2.7 1.5 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|110669388|ref|YP_659199.1| - 3.8e-05 23.6 1.3 4.5e-05 23.4 0.1 1.7 2 1 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|110669388|ref|YP_659199.1| - 0.00074 19.2 0.0 0.001 18.8 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF1989 PF09347.5 gi|110669388|ref|YP_659199.1| - 0.0035 16.8 0.2 0.0052 16.2 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1989) DDE_Tnp_1_2 PF13586.1 gi|110669388|ref|YP_659199.1| - 0.018 15.1 0.3 0.04 14.1 0.2 1.7 1 1 0 1 1 1 0 Transposase DDE domain rve PF00665.21 gi|110669388|ref|YP_659199.1| - 0.082 13.0 1.3 0.49 10.5 0.9 2.0 1 1 0 1 1 1 0 Integrase core domain DUF772 PF05598.6 gi|110669389|ref|YP_659200.1| - 0.031 14.1 0.1 0.054 13.4 0.0 1.4 2 0 0 2 2 2 0 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|110669390|ref|YP_659201.1| - 1.6e-18 67.0 0.0 2.2e-18 66.6 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF2015 PF09435.5 gi|110669390|ref|YP_659201.1| - 0.06 13.1 0.2 0.14 11.9 0.1 1.7 1 0 0 1 1 1 0 Fungal protein of unknown function (DUF2015) Sulfatase PF00884.18 gi|110669391|ref|YP_659202.1| - 2e-06 27.2 0.1 2.8e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Sulfatase PglZ PF08665.7 gi|110669392|ref|YP_659203.1| - 0.031 13.9 0.0 0.33 10.6 0.0 2.3 2 0 0 2 2 2 0 PglZ domain Phosphodiest PF01663.17 gi|110669392|ref|YP_659203.1| - 0.11 11.8 0.1 0.93 8.7 0.0 2.0 1 1 0 2 2 2 0 Type I phosphodiesterase / nucleotide pyrophosphatase Glycos_transf_2 PF00535.21 gi|110669393|ref|YP_659204.1| - 1.9e-09 37.4 1.4 2.3e-09 37.1 0.2 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 2 Chitin_synth_2 PF03142.10 gi|110669393|ref|YP_659204.1| - 0.14 10.5 0.0 0.19 10.0 0.0 1.1 1 0 0 1 1 1 0 Chitin synthase Glycos_transf_1 PF00534.15 gi|110669394|ref|YP_659205.1| - 8.7e-36 122.9 0.0 3.8e-35 120.8 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|110669394|ref|YP_659205.1| - 6.4e-14 52.2 0.0 1.8e-13 50.7 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|110669394|ref|YP_659205.1| - 1.7e-11 44.2 0.0 9.2e-11 41.8 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|110669394|ref|YP_659205.1| - 4e-08 33.5 0.0 7.7e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|110669394|ref|YP_659205.1| - 6.5e-07 29.2 2.1 0.00046 20.0 0.1 2.7 3 0 0 3 3 3 2 Glycosyl transferase 4-like Glyco_transf_4 PF13439.1 gi|110669394|ref|YP_659205.1| - 0.00014 21.6 0.6 0.021 14.5 0.4 2.3 1 1 0 1 1 1 1 Glycosyltransferase Family 4 ABC_tran PF00005.22 gi|110669395|ref|YP_659206.1| - 3.4e-33 114.8 0.0 5.7e-33 114.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|110669395|ref|YP_659206.1| - 2.5e-07 30.1 3.3 2.6e-06 26.8 0.4 2.2 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|110669395|ref|YP_659206.1| - 1.2e-05 26.0 0.0 4.3e-05 24.3 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_21 PF13304.1 gi|110669395|ref|YP_659206.1| - 2.8e-05 24.2 0.0 0.14 12.0 0.0 2.3 1 1 1 2 2 2 2 AAA domain DUF258 PF03193.11 gi|110669395|ref|YP_659206.1| - 0.00012 21.2 0.0 0.00022 20.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|110669395|ref|YP_659206.1| - 0.00076 19.5 0.3 0.0018 18.3 0.2 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|110669395|ref|YP_659206.1| - 0.0009 19.3 0.1 0.0054 16.8 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|110669395|ref|YP_659206.1| - 0.0017 17.8 0.0 0.0043 16.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.4 gi|110669395|ref|YP_659206.1| - 0.0032 16.1 0.1 0.015 13.9 0.1 1.9 2 0 0 2 2 2 1 Predicted ATPase of the ABC class ABC_membrane PF00664.18 gi|110669395|ref|YP_659206.1| - 0.0056 16.1 8.5 0.0087 15.5 5.9 1.3 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_18 PF13238.1 gi|110669395|ref|YP_659206.1| - 0.012 15.9 0.0 0.042 14.1 0.0 1.9 1 1 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|110669395|ref|YP_659206.1| - 0.013 15.0 0.1 0.36 10.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|110669395|ref|YP_659206.1| - 0.013 15.1 0.0 0.039 13.6 0.0 1.9 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|110669395|ref|YP_659206.1| - 0.035 13.2 0.0 0.1 11.7 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA PF00004.24 gi|110669395|ref|YP_659206.1| - 0.039 14.1 0.2 0.37 10.9 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|110669395|ref|YP_659206.1| - 0.04 13.3 0.3 1.3 8.3 0.0 2.8 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_23 PF13476.1 gi|110669395|ref|YP_659206.1| - 0.042 14.1 0.2 0.076 13.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|110669395|ref|YP_659206.1| - 0.066 13.1 0.0 0.29 11.0 0.0 2.1 3 0 0 3 3 3 0 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|110669395|ref|YP_659206.1| - 0.069 12.5 0.0 0.21 10.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|110669395|ref|YP_659206.1| - 0.1 12.5 1.2 0.65 9.9 0.8 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.17 gi|110669395|ref|YP_659206.1| - 0.11 11.2 0.0 0.2 10.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Glycos_transf_1 PF00534.15 gi|110669396|ref|YP_659207.1| - 4.9e-09 35.8 0.0 5.4e-09 35.7 0.0 1.0 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|110669396|ref|YP_659207.1| - 0.0016 18.5 0.0 0.0018 18.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|110669400|ref|YP_659211.1| - 1.4e-26 92.9 0.0 2.2e-26 92.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|110669400|ref|YP_659211.1| - 2.3e-16 60.3 1.5 2.3e-16 60.3 0.2 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|110669400|ref|YP_659211.1| - 3e-15 56.5 0.2 1.1e-14 54.7 0.0 2.0 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|110669400|ref|YP_659211.1| - 1.2e-12 47.8 0.0 1.1e-11 44.7 0.0 2.3 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|110669400|ref|YP_659211.1| - 0.0047 17.1 0.0 0.01 16.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Sulfatase PF00884.18 gi|110669401|ref|YP_659212.1| - 2.8e-46 158.1 0.2 3.4e-46 157.8 0.1 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|110669401|ref|YP_659212.1| - 8.1e-10 38.5 1.8 3.3e-05 23.3 0.6 2.3 2 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|110669401|ref|YP_659212.1| - 0.00011 20.7 0.0 0.0002 19.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF229) Metalloenzyme PF01676.13 gi|110669401|ref|YP_659212.1| - 0.00065 19.1 0.0 0.3 10.4 0.0 2.3 2 0 0 2 2 2 2 Metalloenzyme superfamily CheR_N PF03705.10 gi|110669403|ref|YP_659214.1| - 0.12 11.7 0.0 0.28 10.5 0.0 1.5 2 0 0 2 2 2 0 CheR methyltransferase, all-alpha domain Sulfatase PF00884.18 gi|110669404|ref|YP_659215.1| - 1.8e-31 109.4 0.1 2.9e-31 108.7 0.1 1.3 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|110669404|ref|YP_659215.1| - 0.0016 17.8 0.1 0.2 10.9 0.0 2.4 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Hydrolase_4 PF12146.3 gi|110669404|ref|YP_659215.1| - 0.024 14.4 0.0 0.071 12.9 0.0 1.8 1 0 0 1 1 1 0 Putative lysophospholipase Metalloenzyme PF01676.13 gi|110669404|ref|YP_659215.1| - 0.13 11.6 0.0 0.24 10.7 0.0 1.4 1 0 0 1 1 1 0 Metalloenzyme superfamily Glycos_transf_1 PF00534.15 gi|110669405|ref|YP_659216.1| - 1.5e-48 164.4 0.0 2e-48 164.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|110669405|ref|YP_659216.1| - 1.1e-21 77.3 0.0 1.6e-21 76.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|110669405|ref|YP_659216.1| - 2.6e-21 76.1 0.0 4.3e-21 75.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|110669405|ref|YP_659216.1| - 1.5e-18 67.4 0.1 3.8e-18 66.1 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|110669405|ref|YP_659216.1| - 2.2e-14 53.5 0.0 5.2e-14 52.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|110669405|ref|YP_659216.1| - 3.8e-05 23.5 0.0 6.1e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|110669405|ref|YP_659216.1| - 0.00014 21.4 0.0 0.52 9.7 0.0 2.2 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_transf_20 PF00982.16 gi|110669405|ref|YP_659216.1| - 0.088 11.2 0.0 0.56 8.6 0.0 1.9 2 0 0 2 2 2 0 Glycosyltransferase family 20 Phosphodiest PF01663.17 gi|110669406|ref|YP_659217.1| - 1.6e-13 50.6 0.1 2.1e-13 50.3 0.0 1.2 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Glyco_trans_1_4 PF13692.1 gi|110669408|ref|YP_659219.1| - 1.5e-16 60.7 0.0 2.7e-16 59.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|110669408|ref|YP_659219.1| - 5.7e-15 55.1 0.0 1.5e-14 53.7 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Sulfatase PF00884.18 gi|110669409|ref|YP_659220.1| - 0.00028 20.1 0.1 0.0006 19.0 0.1 1.5 1 1 1 2 2 2 1 Sulfatase Glycos_transf_1 PF00534.15 gi|110669410|ref|YP_659221.1| - 2.5e-35 121.4 0.0 3.7e-35 120.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|110669410|ref|YP_659221.1| - 5.9e-19 68.5 0.0 1.3e-18 67.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|110669410|ref|YP_659221.1| - 2.1e-07 31.2 0.0 3.4e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|110669410|ref|YP_659221.1| - 3.4e-07 30.1 0.0 1.1e-06 28.4 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|110669410|ref|YP_659221.1| - 0.041 14.1 0.0 0.076 13.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferases group 1 Sulfatase PF00884.18 gi|110669411|ref|YP_659222.1| - 4.5e-07 29.3 0.0 5.3e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 Sulfatase HTH_29 PF13551.1 gi|110669412|ref|YP_659223.1| - 4.4e-11 42.9 1.7 2.9e-10 40.2 0.0 2.6 3 0 0 3 3 3 1 Winged helix-turn helix HTH_32 PF13565.1 gi|110669412|ref|YP_659223.1| - 4.7e-09 36.9 5.3 3.8e-07 30.7 0.1 3.0 3 0 0 3 3 3 2 Homeodomain-like domain HTH_23 PF13384.1 gi|110669412|ref|YP_659223.1| - 2.3e-07 30.2 0.0 7e-07 28.6 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|110669412|ref|YP_659223.1| - 1.5e-05 24.8 0.0 2.8e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|110669412|ref|YP_659223.1| - 0.0069 16.2 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase DDE_Tnp_IS1595 PF12762.2 gi|110669413|ref|YP_659224.1| - 4.1e-14 52.6 0.0 5.4e-14 52.2 0.0 1.1 1 0 0 1 1 1 1 ISXO2-like transposase domain DDE_Tnp_1 PF01609.16 gi|110669414|ref|YP_659225.1| - 7.9e-06 25.5 0.4 8.3e-06 25.4 0.3 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|110669414|ref|YP_659225.1| - 0.0022 17.0 0.1 0.0022 17.0 0.1 1.1 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1 PF01609.16 gi|110669416|ref|YP_659227.1| - 8.6e-20 71.1 0.0 1.1e-19 70.7 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.1 gi|110669416|ref|YP_659227.1| - 0.0091 14.2 0.0 0.013 13.6 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain group 1 DUF2015 PF09435.5 gi|110669416|ref|YP_659227.1| - 0.039 13.7 0.2 0.097 12.4 0.1 1.7 1 0 0 1 1 1 0 Fungal protein of unknown function (DUF2015) Sulfatase PF00884.18 gi|110669417|ref|YP_659228.1| - 3e-45 154.7 0.1 4e-45 154.3 0.1 1.2 1 0 0 1 1 1 1 Sulfatase Metalloenzyme PF01676.13 gi|110669417|ref|YP_659228.1| - 3.5e-07 29.8 0.0 8e-07 28.6 0.0 1.6 2 0 0 2 2 2 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|110669417|ref|YP_659228.1| - 3.7e-07 29.8 0.1 0.001 18.4 0.0 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DDE_5 PF13546.1 gi|110669418|ref|YP_659229.1| - 6.6e-26 90.7 0.1 9.2e-26 90.3 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.16 gi|110669419|ref|YP_659230.1| - 2.5e-15 56.6 0.1 3.4e-15 56.1 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|110669419|ref|YP_659230.1| - 0.093 12.6 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Transposase domain (DUF772) Nha1_C PF08619.5 gi|110669420|ref|YP_659231.1| - 0.044 13.0 3.3 0.044 13.0 2.3 1.0 1 0 0 1 1 1 0 Alkali metal cation/H+ antiporter Nha1 C terminus DUF217 PF02697.9 gi|110669421|ref|YP_659232.1| - 0.0058 16.8 0.9 0.008 16.4 0.6 1.3 1 1 0 1 1 1 1 Uncharacterized ACR, COG1753 Antitoxin-MazE PF04014.13 gi|110669422|ref|YP_659233.1| - 0.00018 21.1 0.1 0.00029 20.4 0.0 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE HTH_20 PF12840.2 gi|110669423|ref|YP_659234.1| - 2.9e-05 23.7 0.7 4.9e-05 23.0 0.3 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|110669423|ref|YP_659234.1| - 0.00018 21.7 0.1 0.0004 20.6 0.1 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|110669423|ref|YP_659234.1| - 0.06 13.0 0.3 0.13 11.9 0.2 1.6 1 0 0 1 1 1 0 HTH domain TrmB PF01978.14 gi|110669423|ref|YP_659234.1| - 0.076 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB 4HB_MCP_1 PF12729.2 gi|110669423|ref|YP_659234.1| - 0.11 11.7 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction MarR_2 PF12802.2 gi|110669424|ref|YP_659235.1| - 2.7e-06 26.9 1.3 5.7e-06 25.9 0.0 2.2 3 1 0 3 3 2 1 MarR family TrmB PF01978.14 gi|110669424|ref|YP_659235.1| - 0.0005 19.7 0.0 0.0018 17.9 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|110669424|ref|YP_659235.1| - 0.00061 20.0 0.4 0.0023 18.2 0.0 2.1 2 1 0 2 2 2 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|110669424|ref|YP_659235.1| - 0.0008 19.4 0.0 0.0018 18.3 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator GvpK PF05121.7 gi|110669424|ref|YP_659235.1| - 0.00089 19.0 0.1 0.0016 18.2 0.1 1.4 1 0 0 1 1 1 1 Gas vesicle protein K HTH_24 PF13412.1 gi|110669424|ref|YP_659235.1| - 0.001 18.3 0.1 0.0081 15.5 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.11 gi|110669424|ref|YP_659235.1| - 0.0029 17.1 0.1 0.59 9.7 0.0 2.3 2 0 0 2 2 2 1 LexA DNA binding domain MarR PF01047.17 gi|110669424|ref|YP_659235.1| - 0.003 17.2 0.0 0.008 15.8 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|110669424|ref|YP_659235.1| - 0.0057 16.4 0.0 0.034 13.9 0.0 2.1 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|110669424|ref|YP_659235.1| - 0.0067 16.3 0.0 0.026 14.4 0.0 1.9 3 0 0 3 3 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.1 gi|110669424|ref|YP_659235.1| - 0.0067 16.5 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain NHR2 PF08788.6 gi|110669424|ref|YP_659235.1| - 0.01 15.3 0.0 0.023 14.1 0.0 1.6 1 0 0 1 1 1 0 NHR2 domain like HTH_IclR PF09339.5 gi|110669424|ref|YP_659235.1| - 0.01 15.3 0.0 0.026 14.1 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|110669424|ref|YP_659235.1| - 0.017 14.7 0.0 0.069 12.8 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain FeoC PF09012.5 gi|110669424|ref|YP_659235.1| - 0.021 14.4 0.0 0.058 13.1 0.0 1.7 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF86 PF01934.12 gi|110669424|ref|YP_659235.1| - 0.035 13.7 0.6 0.056 13.0 0.4 1.5 1 1 0 1 1 1 0 Protein of unknown function DUF86 EAP30 PF04157.11 gi|110669424|ref|YP_659235.1| - 0.043 12.9 0.3 0.75 8.9 0.0 2.0 1 1 1 2 2 2 0 EAP30/Vps36 family HTH_11 PF08279.7 gi|110669424|ref|YP_659235.1| - 0.052 13.2 0.0 0.13 11.9 0.0 1.7 1 0 0 1 1 1 0 HTH domain DUF2250 PF10007.4 gi|110669424|ref|YP_659235.1| - 0.057 13.3 0.0 0.13 12.2 0.0 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) TFIIE_alpha PF02002.12 gi|110669424|ref|YP_659235.1| - 0.066 12.7 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_20 PF12840.2 gi|110669424|ref|YP_659235.1| - 0.068 12.9 0.1 0.22 11.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain PaaX PF07848.7 gi|110669424|ref|YP_659235.1| - 0.1 12.6 0.0 0.4 10.7 0.0 1.9 2 0 0 2 2 2 0 PaaX-like protein z-alpha PF02295.12 gi|110669424|ref|YP_659235.1| - 0.12 12.2 0.0 0.4 10.4 0.0 1.8 2 0 0 2 2 2 0 Adenosine deaminase z-alpha domain DUF3437 PF11919.3 gi|110669425|ref|YP_659236.1| - 0.04 13.6 0.6 0.048 13.3 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3437) DUF4256 PF14066.1 gi|110669425|ref|YP_659236.1| - 0.077 12.4 0.1 0.094 12.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4256) TMF_TATA_bd PF12325.3 gi|110669426|ref|YP_659237.1| - 0.81 9.4 4.0 0.77 9.4 0.6 2.0 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding PqqD PF05402.7 gi|110669426|ref|YP_659237.1| - 1.2 9.2 4.2 0.48 10.4 0.2 2.1 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) Lipase_chap PF03280.9 gi|110669427|ref|YP_659238.1| - 0.013 14.9 1.5 0.016 14.7 0.8 1.3 1 1 0 1 1 1 0 Proteobacterial lipase chaperone protein PSK_trans_fac PF07704.6 gi|110669427|ref|YP_659238.1| - 0.016 15.8 1.9 0.04 14.5 1.4 1.8 1 1 0 1 1 1 0 Rv0623-like transcription factor DUF935 PF06074.7 gi|110669427|ref|YP_659238.1| - 0.039 12.6 1.3 0.044 12.4 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF935) MarR_2 PF12802.2 gi|110669430|ref|YP_659241.1| - 9.1e-11 41.2 0.2 0.0006 19.4 0.0 2.7 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.2 gi|110669430|ref|YP_659241.1| - 1e-09 38.0 0.2 0.00092 18.9 0.0 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.14 gi|110669430|ref|YP_659241.1| - 1.5e-07 31.0 0.0 0.0045 16.6 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|110669430|ref|YP_659241.1| - 7.3e-07 29.4 0.0 0.00041 20.6 0.0 2.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|110669430|ref|YP_659241.1| - 6.3e-06 25.6 0.5 0.026 14.0 0.2 2.5 2 0 0 2 2 2 2 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|110669430|ref|YP_659241.1| - 3.8e-05 23.7 0.0 0.11 12.5 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator MarR PF01047.17 gi|110669430|ref|YP_659241.1| - 4.4e-05 23.0 0.0 0.011 15.4 0.0 3.0 3 0 0 3 3 3 1 MarR family HTH_24 PF13412.1 gi|110669430|ref|YP_659241.1| - 4.5e-05 22.7 0.0 0.092 12.1 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|110669430|ref|YP_659241.1| - 9.8e-05 21.9 0.0 0.085 12.5 0.0 2.7 3 0 0 3 3 3 2 Bacterial regulatory protein, arsR family GntR PF00392.16 gi|110669430|ref|YP_659241.1| - 0.00026 20.3 0.1 0.061 12.7 0.0 2.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.7 gi|110669430|ref|YP_659241.1| - 0.00059 19.4 0.0 0.015 14.9 0.0 2.3 2 0 0 2 2 2 1 HTH domain Sigma70_r3 PF04539.11 gi|110669430|ref|YP_659241.1| - 0.001 18.8 0.0 0.52 10.2 0.0 2.5 2 0 0 2 2 2 1 Sigma-70 region 3 HTH_10 PF04967.7 gi|110669430|ref|YP_659241.1| - 0.0051 16.3 0.0 0.11 12.1 0.0 2.5 2 0 0 2 2 2 1 HTH DNA binding domain HTH_Crp_2 PF13545.1 gi|110669430|ref|YP_659241.1| - 0.0084 15.8 0.0 0.52 10.1 0.0 2.6 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain HTH_29 PF13551.1 gi|110669430|ref|YP_659241.1| - 0.013 15.6 0.0 2.3 8.3 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn helix RP-C PF03428.8 gi|110669430|ref|YP_659241.1| - 0.013 14.9 0.0 0.038 13.4 0.0 1.7 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_28 PF13518.1 gi|110669430|ref|YP_659241.1| - 0.014 15.3 0.0 3.9 7.5 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|110669430|ref|YP_659241.1| - 0.017 14.7 0.0 0.21 11.2 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|110669430|ref|YP_659241.1| - 0.094 12.0 0.0 0.27 10.5 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_7 PF02796.10 gi|110669430|ref|YP_659241.1| - 0.13 12.1 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase OrfB_Zn_ribbon PF07282.6 gi|110669431|ref|YP_659242.1| - 3.3e-20 71.5 0.9 7.9e-20 70.2 0.6 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|110669431|ref|YP_659242.1| - 1.1e-11 44.6 0.0 2.1e-11 43.6 0.0 1.5 1 0 0 1 1 1 1 Probable transposase IBR PF01485.16 gi|110669431|ref|YP_659242.1| - 0.0015 18.3 1.2 0.0015 18.3 0.8 2.1 2 0 0 2 2 2 1 IBR domain DUF349 PF03993.7 gi|110669431|ref|YP_659242.1| - 0.062 13.4 2.4 0.089 12.9 0.3 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF349) DUF2283 PF10049.4 gi|110669431|ref|YP_659242.1| - 0.15 11.9 1.3 0.56 10.1 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2283) TrmB PF01978.14 gi|110669432|ref|YP_659243.1| - 6.2e-07 29.0 0.0 1.2e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|110669432|ref|YP_659243.1| - 0.00067 19.4 0.0 0.0016 18.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|110669432|ref|YP_659243.1| - 0.0059 16.1 0.0 0.023 14.2 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|110669432|ref|YP_659243.1| - 0.015 14.6 0.0 0.044 13.1 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|110669432|ref|YP_659243.1| - 0.02 15.2 0.0 0.041 14.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain PadR PF03551.9 gi|110669432|ref|YP_659243.1| - 0.052 13.3 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family FeoC PF09012.5 gi|110669432|ref|YP_659243.1| - 0.17 11.6 0.0 0.27 10.9 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF3368 PF11848.3 gi|110669434|ref|YP_659245.1| - 1.1e-13 50.4 0.0 4.3e-13 48.6 0.0 2.0 3 0 0 3 3 3 1 Domain of unknown function (DUF3368) UPF0175 PF03683.8 gi|110669435|ref|YP_659246.1| - 5.5e-14 51.3 0.5 5.5e-14 51.3 0.4 1.5 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.16 gi|110669435|ref|YP_659246.1| - 5.2e-05 22.9 2.0 0.00022 20.9 0.5 2.5 3 1 0 3 3 3 1 Ribbon-helix-helix protein, copG family UPF0081 PF03652.10 gi|110669435|ref|YP_659246.1| - 0.034 14.2 0.1 0.047 13.8 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0081) OrfB_Zn_ribbon PF07282.6 gi|110669436|ref|YP_659247.1| - 0.15 11.7 0.2 0.15 11.7 0.1 1.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain NYD-SP28 PF14772.1 gi|110669437|ref|YP_659248.1| - 0.1 12.6 2.7 0.26 11.3 1.6 1.8 1 1 1 2 2 2 0 Sperm tail TBPIP PF07106.8 gi|110669437|ref|YP_659248.1| - 0.17 11.4 2.3 0.26 10.8 1.3 1.4 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF1843 PF08898.5 gi|110669437|ref|YP_659248.1| - 1.3 9.0 6.6 0.87 9.6 0.9 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF1843) PIN_3 PF13470.1 gi|110669438|ref|YP_659249.1| - 0.0029 18.2 1.0 0.0038 17.8 0.7 1.2 1 0 0 1 1 1 1 PIN domain Rnk_N PF14760.1 gi|110669438|ref|YP_659249.1| - 0.089 12.8 1.5 9 6.4 0.2 2.9 2 1 0 2 2 2 0 Rnk N-terminus zf-ribbon_3 PF13248.1 gi|110669439|ref|YP_659250.1| - 0.049 12.8 1.1 1.6 8.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|110669439|ref|YP_659250.1| - 0.55 9.9 4.8 0.44 10.2 0.3 2.6 2 1 0 2 2 2 0 Nudix N-terminal DUF2387 PF09526.5 gi|110669439|ref|YP_659250.1| - 0.97 9.3 4.0 0.6 10.0 0.1 2.3 1 1 0 2 2 2 0 Probable metal-binding protein (DUF2387) Mso1_Sec1_bdg PF14475.1 gi|110669440|ref|YP_659251.1| - 0.07 12.5 0.1 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Sec1-binding region of Mso1 Se-cys_synth_N PF12390.3 gi|110669440|ref|YP_659251.1| - 0.59 10.2 2.5 5.2 7.2 0.2 2.3 2 0 0 2 2 2 0 Selenocysteine synthase N terminal tRNA_anti-codon PF01336.20 gi|110669441|ref|YP_659252.1| - 0.0053 16.5 0.1 0.011 15.5 0.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain PIN PF01850.16 gi|110669443|ref|YP_659254.1| - 4.1e-15 56.1 3.4 4.6e-15 56.0 2.4 1.0 1 0 0 1 1 1 1 PIN domain Antitoxin-MazE PF04014.13 gi|110669444|ref|YP_659255.1| - 7e-09 35.2 0.8 1.1e-08 34.6 0.6 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE HTH_IclR PF09339.5 gi|110669446|ref|YP_659257.1| - 0.029 13.9 0.0 0.31 10.6 0.0 2.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain TrmB PF01978.14 gi|110669446|ref|YP_659257.1| - 0.15 11.7 0.0 2.4 7.9 0.0 2.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF457 PF04307.9 gi|110669448|ref|YP_659259.1| - 6.8e-09 35.2 7.7 8.8e-09 34.8 5.3 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|110669448|ref|YP_659259.1| - 0.00073 19.2 0.1 0.0012 18.5 0.1 1.3 1 0 0 1 1 1 1 Zinc dependent phospholipase C CoatB PF10389.4 gi|110669448|ref|YP_659259.1| - 0.0052 16.6 1.3 0.0099 15.7 0.9 1.5 1 0 0 1 1 1 1 Bacteriophage coat protein B DUF1616 PF07760.6 gi|110669449|ref|YP_659260.1| - 7.3e-104 346.9 0.6 8.7e-104 346.6 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF4131 PF13567.1 gi|110669449|ref|YP_659260.1| - 0.018 14.4 4.8 0.034 13.5 0.9 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) Fe_bilin_red PF05996.7 gi|110669450|ref|YP_659261.1| - 0.025 14.0 0.2 0.05 13.0 0.1 1.4 1 0 0 1 1 1 0 Ferredoxin-dependent bilin reductase ATG16 PF08614.6 gi|110669450|ref|YP_659261.1| - 0.092 12.5 0.1 0.18 11.5 0.1 1.5 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) HTH_11 PF08279.7 gi|110669452|ref|YP_659263.1| - 4.6e-05 22.9 0.0 0.0001 21.8 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.7 gi|110669452|ref|YP_659263.1| - 0.00016 21.1 0.3 0.0005 19.5 0.0 2.0 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.2 gi|110669452|ref|YP_659263.1| - 0.00029 20.4 0.1 0.00067 19.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|110669452|ref|YP_659263.1| - 0.00068 19.1 0.1 0.0016 17.9 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|110669452|ref|YP_659263.1| - 0.001 18.7 0.0 0.0021 17.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|110669452|ref|YP_659263.1| - 0.0013 18.8 0.4 0.59 10.3 0.0 2.7 2 0 0 2 2 2 1 Winged helix-turn helix GntR PF00392.16 gi|110669452|ref|YP_659263.1| - 0.0015 17.9 0.8 0.0081 15.5 0.0 2.5 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|110669452|ref|YP_659263.1| - 0.0016 18.1 0.0 0.0036 16.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB SgrR_N PF12793.2 gi|110669452|ref|YP_659263.1| - 0.0017 18.3 0.0 0.0063 16.5 0.0 1.9 2 0 0 2 2 2 1 Sugar transport-related sRNA regulator N-term HTH_36 PF13730.1 gi|110669452|ref|YP_659263.1| - 0.0067 16.5 0.0 0.014 15.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|110669452|ref|YP_659263.1| - 0.012 15.8 0.0 0.036 14.3 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|110669452|ref|YP_659263.1| - 0.029 14.4 0.0 0.085 12.9 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator Ehrlichia_rpt PF09528.5 gi|110669452|ref|YP_659263.1| - 0.057 11.5 0.1 0.17 9.9 0.0 1.6 2 0 0 2 2 2 0 Ehrlichia tandem repeat (Ehrlichia_rpt) HTH_23 PF13384.1 gi|110669452|ref|YP_659263.1| - 0.062 12.9 0.0 0.15 11.7 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_24 PF13412.1 gi|110669452|ref|YP_659263.1| - 0.075 12.4 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|110669452|ref|YP_659263.1| - 0.12 12.1 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family SMC_Nse1 PF07574.8 gi|110669452|ref|YP_659263.1| - 0.14 11.7 0.0 0.82 9.2 0.0 2.0 2 0 0 2 2 2 0 Nse1 non-SMC component of SMC5-6 complex Bac_rhodopsin PF01036.13 gi|110669453|ref|YP_659264.1| - 0.099 11.9 0.8 0.11 11.8 0.1 1.4 2 0 0 2 2 2 0 Bacteriorhodopsin-like protein DUF2306 PF10067.4 gi|110669453|ref|YP_659264.1| - 0.2 11.8 2.3 6.2 7.0 0.0 2.7 3 0 0 3 3 3 0 Predicted membrane protein (DUF2306) DUF457 PF04307.9 gi|110669454|ref|YP_659265.1| - 4.3e-11 42.3 4.1 6.3e-11 41.8 2.8 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|110669454|ref|YP_659265.1| - 0.0052 16.4 0.0 0.018 14.7 0.0 1.7 1 1 0 1 1 1 1 Zinc dependent phospholipase C Trypan_PARP PF05887.6 gi|110669456|ref|YP_659267.1| - 0.0014 18.5 16.9 0.0014 18.5 11.7 2.3 2 1 0 3 3 3 1 Procyclic acidic repetitive protein (PARP) Shisa PF13908.1 gi|110669456|ref|YP_659267.1| - 0.17 12.0 6.9 0.25 11.5 4.4 1.6 1 1 0 1 1 1 0 Wnt and FGF inhibitory regulator CENP-Q PF13094.1 gi|110669456|ref|YP_659267.1| - 0.39 10.7 7.6 1.9 8.4 5.3 2.0 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit Neisseria_TspB PF05616.8 gi|110669456|ref|YP_659267.1| - 2.6 6.3 13.7 3.9 5.7 9.5 1.2 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein DUF2360 PF10152.4 gi|110669456|ref|YP_659267.1| - 8.5 6.6 13.2 1.3 9.3 1.5 2.4 2 0 0 2 2 2 0 Predicted coiled-coil domain-containing protein (DUF2360) stn_TNFRSF12A PF12191.3 gi|110669457|ref|YP_659268.1| - 0.12 12.3 0.1 0.3 11.1 0.1 1.6 1 0 0 1 1 1 0 Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain AhpC-TSA PF00578.16 gi|110669458|ref|YP_659269.1| - 2.7e-11 43.2 0.0 3.3e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|110669458|ref|YP_659269.1| - 7.3e-07 28.8 0.0 8.3e-07 28.6 0.0 1.0 1 0 0 1 1 1 1 Redoxin DUF1814 PF08843.6 gi|110669459|ref|YP_659270.1| - 2.4e-05 24.2 0.0 2.6e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF1814) NTP_transf_5 PF14907.1 gi|110669459|ref|YP_659270.1| - 3.7e-05 23.1 0.0 4.8e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase NTP_transf_2 PF01909.18 gi|110669459|ref|YP_659270.1| - 0.0014 18.8 0.0 0.0019 18.4 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Propep_M14 PF02244.11 gi|110669459|ref|YP_659270.1| - 0.022 14.4 0.0 0.043 13.4 0.0 1.5 1 1 0 1 1 1 0 Carboxypeptidase activation peptide DUF99 PF01949.11 gi|110669459|ref|YP_659270.1| - 0.1 11.7 0.0 0.2 10.7 0.0 1.7 2 1 0 2 2 2 0 Protein of unknown function DUF99 HTH_23 PF13384.1 gi|110669460|ref|YP_659271.1| - 0.00036 20.0 0.2 0.0021 17.6 0.0 2.2 1 1 1 2 2 2 1 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|110669460|ref|YP_659271.1| - 0.0017 18.2 0.0 0.0041 17.0 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|110669460|ref|YP_659271.1| - 0.0022 17.5 0.2 0.0073 15.9 0.1 1.8 1 1 1 2 2 2 1 MarR family HTH_1 PF00126.22 gi|110669460|ref|YP_659271.1| - 0.0029 17.3 0.4 0.022 14.4 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family GntR PF00392.16 gi|110669460|ref|YP_659271.1| - 0.0045 16.3 0.1 0.079 12.4 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|110669460|ref|YP_659271.1| - 0.0049 16.5 0.1 0.012 15.2 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|110669460|ref|YP_659271.1| - 0.0091 16.0 0.0 0.093 12.8 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator HTH_28 PF13518.1 gi|110669460|ref|YP_659271.1| - 0.01 15.8 0.1 0.032 14.2 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|110669460|ref|YP_659271.1| - 0.026 14.6 0.2 0.049 13.7 0.0 1.5 2 0 0 2 2 2 0 Winged helix-turn helix HTH_24 PF13412.1 gi|110669460|ref|YP_659271.1| - 0.029 13.7 0.0 0.044 13.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_30 PF13556.1 gi|110669460|ref|YP_659271.1| - 0.05 13.1 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain RPA_C PF08784.6 gi|110669460|ref|YP_659271.1| - 0.076 13.4 0.0 0.17 12.2 0.0 1.5 2 0 0 2 2 2 0 Replication protein A C terminal CbiA PF01656.18 gi|110669461|ref|YP_659272.1| - 1.1e-29 103.2 0.3 2.9e-29 101.8 0.1 1.8 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF4095 PF13338.1 gi|110669461|ref|YP_659272.1| - 1.4e-25 89.8 0.2 2.6e-25 88.9 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4095) AAA_31 PF13614.1 gi|110669461|ref|YP_659272.1| - 1.2e-11 44.7 0.1 3.4e-11 43.3 0.1 1.8 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|110669461|ref|YP_659272.1| - 1.5e-11 43.8 2.6 4.6e-09 35.7 1.8 2.3 1 1 0 1 1 1 1 ATPase MipZ VirC1 PF07015.6 gi|110669461|ref|YP_659272.1| - 2.6e-05 23.4 0.3 0.00055 19.0 0.0 2.3 2 0 0 2 2 2 1 VirC1 protein ArsA_ATPase PF02374.10 gi|110669461|ref|YP_659272.1| - 0.00025 20.1 2.4 0.0019 17.3 1.7 2.2 1 1 0 1 1 1 1 Anion-transporting ATPase YhjQ PF06564.7 gi|110669461|ref|YP_659272.1| - 0.0027 17.0 0.0 0.0047 16.3 0.0 1.4 1 0 0 1 1 1 1 YhjQ protein MBT PF02820.13 gi|110669461|ref|YP_659272.1| - 0.044 13.7 0.1 0.37 10.7 0.0 2.4 1 1 1 2 2 2 0 mbt repeat Fer4_NifH PF00142.13 gi|110669461|ref|YP_659272.1| - 0.07 12.3 0.0 1.7 7.7 0.0 2.4 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_19 PF13245.1 gi|110669461|ref|YP_659272.1| - 0.091 12.5 1.1 11 5.8 0.0 2.7 2 0 0 2 2 2 0 Part of AAA domain NTP_transf_2 PF01909.18 gi|110669462|ref|YP_659273.1| - 6.2e-09 36.0 0.1 6.2e-09 36.0 0.1 1.6 2 0 0 2 2 2 1 Nucleotidyltransferase domain HTH_11 PF08279.7 gi|110669462|ref|YP_659273.1| - 1e-06 28.3 0.8 1.5e-06 27.7 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.5 gi|110669462|ref|YP_659273.1| - 0.001 18.5 0.0 0.0024 17.4 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|110669462|ref|YP_659273.1| - 0.0091 15.6 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|110669462|ref|YP_659273.1| - 0.033 13.6 0.0 0.075 12.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|110669462|ref|YP_659273.1| - 0.037 13.6 0.1 0.087 12.5 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_41 PF14502.1 gi|110669462|ref|YP_659273.1| - 0.066 12.8 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF294 PF03445.8 gi|110669462|ref|YP_659273.1| - 0.089 12.4 0.1 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HTH_23 PF13384.1 gi|110669462|ref|YP_659273.1| - 0.12 12.0 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|110669462|ref|YP_659273.1| - 0.15 11.8 0.2 0.46 10.3 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DUF3640 PF12342.3 gi|110669464|ref|YP_659275.1| - 0.051 13.0 0.2 0.11 12.0 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3640) ABC_tran PF00005.22 gi|110669466|ref|YP_659277.1| - 5.6e-35 120.6 0.0 8.3e-35 120.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110669466|ref|YP_659277.1| - 1.3e-10 41.7 0.1 4.8e-05 23.4 0.1 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|110669466|ref|YP_659277.1| - 0.00015 21.1 0.0 0.0004 19.8 0.0 1.7 2 0 0 2 2 1 1 P-loop containing region of AAA domain MobB PF03205.9 gi|110669466|ref|YP_659277.1| - 0.00023 20.8 0.1 0.00041 20.0 0.1 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|110669466|ref|YP_659277.1| - 0.00054 19.7 0.0 0.00081 19.1 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_23 PF13476.1 gi|110669466|ref|YP_659277.1| - 0.00062 20.1 0.6 0.0015 18.9 0.1 1.6 1 1 1 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|110669466|ref|YP_659277.1| - 0.0017 17.3 0.6 0.003 16.4 0.1 1.6 2 0 0 2 2 2 1 NB-ARC domain DUF258 PF03193.11 gi|110669466|ref|YP_659277.1| - 0.0022 17.2 0.1 0.004 16.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|110669466|ref|YP_659277.1| - 0.0024 17.3 0.1 0.047 13.1 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain NACHT PF05729.7 gi|110669466|ref|YP_659277.1| - 0.0024 17.5 0.4 0.0042 16.7 0.3 1.4 1 0 0 1 1 1 1 NACHT domain MMR_HSR1 PF01926.18 gi|110669466|ref|YP_659277.1| - 0.0026 17.7 0.2 0.0064 16.4 0.1 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase NTPase_1 PF03266.10 gi|110669466|ref|YP_659277.1| - 0.0026 17.4 0.3 0.0082 15.8 0.1 1.8 2 0 0 2 2 2 1 NTPase AAA_22 PF13401.1 gi|110669466|ref|YP_659277.1| - 0.003 17.7 0.5 0.026 14.6 0.3 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|110669466|ref|YP_659277.1| - 0.0039 16.4 0.8 0.015 14.5 0.5 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|110669466|ref|YP_659277.1| - 0.0074 15.7 0.1 0.016 14.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|110669466|ref|YP_659277.1| - 0.0079 15.7 0.2 0.021 14.3 0.1 1.7 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|110669466|ref|YP_659277.1| - 0.01 15.9 0.1 0.034 14.3 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|110669466|ref|YP_659277.1| - 0.011 14.7 0.0 0.016 14.2 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain Miro PF08477.8 gi|110669466|ref|YP_659277.1| - 0.013 15.9 0.0 0.026 14.9 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein ATP-synt_ab PF00006.20 gi|110669466|ref|YP_659277.1| - 0.014 14.8 0.0 0.014 14.8 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_16 PF13191.1 gi|110669466|ref|YP_659277.1| - 0.015 15.3 0.0 0.026 14.4 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.1 gi|110669466|ref|YP_659277.1| - 0.015 15.2 0.0 0.028 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|110669466|ref|YP_659277.1| - 0.019 13.7 0.2 0.031 13.0 0.1 1.2 1 0 0 1 1 1 0 ArgK protein cobW PF02492.14 gi|110669466|ref|YP_659277.1| - 0.023 14.1 0.5 0.043 13.2 0.1 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain T2SE PF00437.15 gi|110669466|ref|YP_659277.1| - 0.027 13.3 0.1 0.041 12.7 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_18 PF13238.1 gi|110669466|ref|YP_659277.1| - 0.03 14.6 0.8 0.081 13.2 0.5 1.9 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|110669466|ref|YP_659277.1| - 0.037 14.8 0.0 0.069 13.9 0.0 1.7 2 0 0 2 2 1 0 AAA domain Mg_chelatase PF01078.16 gi|110669466|ref|YP_659277.1| - 0.04 13.0 0.1 6.8 5.7 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|110669466|ref|YP_659277.1| - 0.072 12.8 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) UPF0079 PF02367.12 gi|110669466|ref|YP_659277.1| - 0.095 12.3 0.2 0.17 11.4 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_24 PF13479.1 gi|110669466|ref|YP_659277.1| - 0.1 12.1 0.5 0.23 10.9 0.1 1.7 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|110669466|ref|YP_659277.1| - 0.11 11.1 0.5 1.6 7.2 0.2 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class DUF3584 PF12128.3 gi|110669466|ref|YP_659277.1| - 0.15 9.3 0.3 0.23 8.7 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC_tran PF00005.22 gi|110669467|ref|YP_659278.1| - 1.9e-31 109.2 0.0 2.9e-31 108.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110669467|ref|YP_659278.1| - 9.3e-09 35.6 0.3 0.00013 22.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|110669467|ref|YP_659278.1| - 8.8e-06 25.1 0.6 5.5e-05 22.4 0.4 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|110669467|ref|YP_659278.1| - 0.00025 20.5 0.0 0.00051 19.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|110669467|ref|YP_659278.1| - 0.00057 20.2 0.1 0.00083 19.7 0.1 1.4 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|110669467|ref|YP_659278.1| - 0.0021 17.2 0.0 0.0033 16.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|110669467|ref|YP_659278.1| - 0.0065 16.4 0.3 0.017 15.1 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|110669467|ref|YP_659278.1| - 0.033 14.0 0.0 0.13 12.1 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|110669467|ref|YP_659278.1| - 0.039 14.1 0.2 0.1 12.7 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|110669467|ref|YP_659278.1| - 0.079 12.3 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain AAA_30 PF13604.1 gi|110669467|ref|YP_659278.1| - 0.088 12.3 0.1 0.2 11.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|110669467|ref|YP_659278.1| - 0.094 11.7 0.0 0.31 10.0 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_13 PF13166.1 gi|110669467|ref|YP_659278.1| - 0.13 10.7 0.0 0.68 8.3 0.0 2.0 1 1 1 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|110669467|ref|YP_659278.1| - 0.14 11.8 0.3 0.68 9.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|110669467|ref|YP_659278.1| - 0.15 12.9 0.1 0.37 11.6 0.1 1.8 1 1 0 1 1 1 0 AAA domain BPD_transp_2 PF02653.11 gi|110669468|ref|YP_659279.1| - 7e-34 117.0 40.5 9.8e-34 116.5 28.1 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|110669469|ref|YP_659280.1| - 7.5e-39 133.2 39.7 8.9e-39 133.0 27.5 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.1 gi|110669470|ref|YP_659281.1| - 1.4e-83 281.1 0.1 1.6e-83 280.8 0.1 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|110669470|ref|YP_659281.1| - 2.8e-70 236.8 0.1 3.4e-70 236.6 0.1 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.4 gi|110669470|ref|YP_659281.1| - 0.68 10.0 6.1 1.3 9.1 4.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence NikR_C PF08753.6 gi|110669471|ref|YP_659282.1| - 4.7e-23 80.8 2.1 6.6e-23 80.4 1.5 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|110669471|ref|YP_659282.1| - 2.5e-05 23.9 0.0 4.3e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|110669471|ref|YP_659282.1| - 0.014 15.5 0.0 0.033 14.3 0.0 1.6 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0156) Bromo_coat PF01318.13 gi|110669471|ref|YP_659282.1| - 0.077 12.6 0.1 0.44 10.2 0.0 1.9 2 0 0 2 2 2 0 Bromovirus coat protein CbiM PF01891.11 gi|110669472|ref|YP_659283.1| - 2.3e-60 203.7 21.9 2.6e-60 203.5 15.2 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF3816 PF12822.2 gi|110669472|ref|YP_659283.1| - 0.59 10.0 24.0 1.4 8.7 16.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3816) PMP22_Claudin PF00822.15 gi|110669472|ref|YP_659283.1| - 7.8 6.1 8.9 62 3.1 6.2 2.2 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin family PDGLE PF13190.1 gi|110669473|ref|YP_659284.1| - 1.2e-12 47.2 2.4 1.6e-12 46.9 1.7 1.1 1 0 0 1 1 1 1 PDGLE domain CbiQ PF02361.11 gi|110669474|ref|YP_659285.1| - 4.4e-27 95.1 12.2 6e-27 94.6 8.5 1.1 1 0 0 1 1 1 1 Cobalt transport protein Cytochrom_B_N PF00033.14 gi|110669474|ref|YP_659285.1| - 0.00045 19.6 2.9 0.0014 18.0 2.0 1.8 1 1 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|110669474|ref|YP_659285.1| - 0.017 14.4 5.7 0.22 10.9 3.9 2.3 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 ABC_tran PF00005.22 gi|110669475|ref|YP_659286.1| - 5.2e-28 98.0 0.0 7e-28 97.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110669475|ref|YP_659286.1| - 2.1e-08 34.4 0.5 0.0013 18.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|110669475|ref|YP_659286.1| - 1.1e-05 24.7 0.1 0.1 11.8 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|110669475|ref|YP_659286.1| - 0.00021 21.1 0.1 0.0014 18.5 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|110669475|ref|YP_659286.1| - 0.00044 19.7 0.0 0.0011 18.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|110669475|ref|YP_659286.1| - 0.02 15.7 0.4 1 10.1 0.2 2.3 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|110669475|ref|YP_659286.1| - 0.041 12.7 0.4 0.28 10.0 0.1 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.13 gi|110669475|ref|YP_659286.1| - 0.083 12.3 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family Urease_beta PF00699.15 gi|110669476|ref|YP_659287.1| - 5.7e-44 148.0 0.0 6.9e-44 147.7 0.0 1.1 1 0 0 1 1 1 1 Urease beta subunit ROKNT PF08067.6 gi|110669476|ref|YP_659287.1| - 0.025 14.4 2.0 0.031 14.1 0.2 1.9 2 0 0 2 2 2 0 ROKNT (NUC014) domain Amidohydro_1 PF01979.15 gi|110669477|ref|YP_659288.1| - 6.7e-62 210.0 2.8 1.1e-61 209.3 1.9 1.3 1 0 0 1 1 1 1 Amidohydrolase family Urease_alpha PF00449.15 gi|110669477|ref|YP_659288.1| - 2.7e-48 163.0 2.2 5.6e-48 162.0 1.5 1.6 1 0 0 1 1 1 1 Urease alpha-subunit, N-terminal domain Amidohydro_5 PF13594.1 gi|110669477|ref|YP_659288.1| - 4.5e-07 29.5 2.0 1.2e-06 28.2 1.4 1.7 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|110669477|ref|YP_659288.1| - 4.7e-07 30.1 0.6 0.0034 17.4 0.6 2.4 2 1 0 2 2 2 2 Amidohydrolase Amidohydro_3 PF07969.6 gi|110669477|ref|YP_659288.1| - 1.9e-06 27.3 1.6 1.9e-06 27.3 1.1 2.5 1 1 1 2 2 2 1 Amidohydrolase family Pyocin_S PF06958.7 gi|110669477|ref|YP_659288.1| - 0.061 13.6 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 S-type Pyocin Urease_gamma PF00547.13 gi|110669478|ref|YP_659289.1| - 3.5e-43 145.6 0.1 4e-43 145.4 0.0 1.0 1 0 0 1 1 1 1 Urease, gamma subunit DUF732 PF05305.9 gi|110669478|ref|YP_659289.1| - 0.05 13.6 0.0 0.064 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF732) cobW PF02492.14 gi|110669479|ref|YP_659290.1| - 2.3e-36 124.8 0.0 2.7e-36 124.6 0.0 1.0 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|110669479|ref|YP_659290.1| - 1.9e-11 43.2 0.2 7.2e-06 24.9 0.0 2.1 2 0 0 2 2 2 2 ArgK protein MobB PF03205.9 gi|110669479|ref|YP_659290.1| - 0.0054 16.4 0.0 0.013 15.2 0.0 1.7 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|110669479|ref|YP_659290.1| - 0.018 14.7 0.0 0.026 14.2 0.0 1.3 1 0 0 1 1 1 0 NTPase AAA_18 PF13238.1 gi|110669479|ref|YP_659290.1| - 0.018 15.3 0.0 0.036 14.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|110669479|ref|YP_659290.1| - 0.022 15.5 0.0 0.044 14.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|110669479|ref|YP_659290.1| - 0.024 14.6 0.0 0.031 14.2 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain GTP_EFTU PF00009.22 gi|110669479|ref|YP_659290.1| - 0.029 13.8 0.0 7.2 6.0 0.0 2.5 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain SRP54 PF00448.17 gi|110669479|ref|YP_659290.1| - 0.037 13.4 0.0 0.059 12.8 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain LpxK PF02606.9 gi|110669479|ref|YP_659290.1| - 0.038 12.9 0.0 0.11 11.3 0.0 1.6 1 1 1 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase NACHT PF05729.7 gi|110669479|ref|YP_659290.1| - 0.04 13.5 0.0 0.21 11.2 0.0 1.9 2 0 0 2 2 2 0 NACHT domain ATP_bind_1 PF03029.12 gi|110669479|ref|YP_659290.1| - 0.066 12.7 0.0 0.24 10.9 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Miro PF08477.8 gi|110669479|ref|YP_659290.1| - 0.067 13.6 0.0 0.38 11.2 0.0 2.0 2 0 0 2 2 2 0 Miro-like protein UPF0079 PF02367.12 gi|110669479|ref|YP_659290.1| - 0.069 12.7 0.1 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Arch_ATPase PF01637.13 gi|110669479|ref|YP_659290.1| - 0.069 12.8 0.0 0.086 12.5 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_10 PF12846.2 gi|110669479|ref|YP_659290.1| - 0.079 12.3 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_PrkA PF08298.6 gi|110669479|ref|YP_659290.1| - 0.15 10.6 0.0 0.26 9.9 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain UreD PF01774.12 gi|110669480|ref|YP_659291.1| - 1.3e-44 152.2 0.3 1.6e-44 151.9 0.2 1.1 1 0 0 1 1 1 1 UreD urease accessory protein UreE_N PF02814.10 gi|110669481|ref|YP_659292.1| - 2.5e-11 42.9 1.7 5.4e-11 41.8 1.2 1.5 1 0 0 1 1 1 1 UreE urease accessory protein, N-terminal domain UreE_C PF05194.7 gi|110669481|ref|YP_659292.1| - 0.1 12.7 35.3 80 3.4 24.5 3.3 1 1 0 1 1 1 0 UreE urease accessory protein, C-terminal domain DUF2796 PF10986.3 gi|110669481|ref|YP_659292.1| - 0.11 12.4 28.0 0.22 11.4 19.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2796) YfhO PF09586.5 gi|110669481|ref|YP_659292.1| - 7 4.5 5.3 8 4.3 3.7 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO UreF PF01730.11 gi|110669482|ref|YP_659293.1| - 3.1e-33 114.9 0.0 3.9e-33 114.6 0.0 1.1 1 0 0 1 1 1 1 UreF AA_permease_2 PF13520.1 gi|110669485|ref|YP_659296.1| - 8.1e-43 146.5 48.4 1e-42 146.2 33.6 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|110669485|ref|YP_659296.1| - 5e-40 137.2 48.0 6.3e-40 136.9 33.3 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|110669485|ref|YP_659296.1| - 2.4e-07 31.0 0.5 6.7e-07 29.5 0.3 1.9 2 0 0 2 2 2 1 Universal stress protein family Phage_HK97_TLTM PF06120.6 gi|110669485|ref|YP_659296.1| - 0.55 9.5 1.3 5.6 6.2 0.0 2.2 2 0 0 2 2 2 0 Tail length tape measure protein TrkA_N PF02254.13 gi|110669486|ref|YP_659297.1| - 8.9e-14 51.4 0.2 1.2e-13 51.0 0.1 1.1 1 0 0 1 1 1 1 TrkA-N domain LMWPc PF01451.16 gi|110669487|ref|YP_659298.1| - 1.1e-26 93.8 0.0 1.2e-26 93.6 0.0 1.0 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase Cons_hypoth698 PF03601.9 gi|110669489|ref|YP_659300.1| - 4.4e-65 219.3 17.8 5.2e-65 219.0 12.3 1.0 1 0 0 1 1 1 1 Conserved hypothetical protein 698 Metallophos_2 PF12850.2 gi|110669490|ref|YP_659301.1| - 6.7e-22 77.9 0.5 8.9e-22 77.5 0.4 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|110669490|ref|YP_659301.1| - 5.8e-05 22.5 0.1 0.0099 15.2 0.0 2.4 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase tRNA_lig_kinase PF08303.6 gi|110669490|ref|YP_659301.1| - 0.026 14.3 0.0 0.036 13.9 0.0 1.1 1 0 0 1 1 1 0 tRNA ligase kinase domain Peptidase_M29 PF02073.10 gi|110669491|ref|YP_659302.1| - 5.1e-110 367.9 0.7 5.7e-110 367.7 0.5 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) AsnC_trans_reg PF01037.16 gi|110669492|ref|YP_659303.1| - 2.7e-11 43.0 0.0 4.9e-11 42.1 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|110669492|ref|YP_659303.1| - 8.3e-10 37.9 0.1 2.3e-09 36.5 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|110669492|ref|YP_659303.1| - 1.4e-08 34.1 0.3 2.5e-08 33.2 0.2 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.15 gi|110669492|ref|YP_659303.1| - 4.9e-07 29.3 0.3 9.3e-07 28.4 0.1 1.6 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|110669492|ref|YP_659303.1| - 6.7e-06 25.8 0.2 1.3e-05 24.9 0.1 1.5 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|110669492|ref|YP_659303.1| - 1.3e-05 24.6 0.1 2.8e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|110669492|ref|YP_659303.1| - 6.3e-05 22.5 0.2 0.00019 21.1 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.7 gi|110669492|ref|YP_659303.1| - 0.00011 21.7 0.0 0.00025 20.5 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GntR PF00392.16 gi|110669492|ref|YP_659303.1| - 0.00018 20.8 0.2 0.0005 19.4 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.7 gi|110669492|ref|YP_659303.1| - 0.00036 20.0 0.2 0.0011 18.4 0.0 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.1 gi|110669492|ref|YP_659303.1| - 0.00075 19.4 0.0 0.0019 18.1 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|110669492|ref|YP_659303.1| - 0.0019 17.7 0.1 0.0037 16.8 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|110669492|ref|YP_659303.1| - 0.0035 16.9 0.1 0.013 15.1 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_Tnp_ISL3 PF13542.1 gi|110669492|ref|YP_659303.1| - 0.0039 16.3 0.3 0.034 13.3 0.0 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_38 PF13936.1 gi|110669492|ref|YP_659303.1| - 0.0043 16.5 0.0 0.0087 15.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|110669492|ref|YP_659303.1| - 0.006 16.2 0.0 0.048 13.3 0.0 2.1 2 0 0 2 2 2 1 MarR family Mga PF05043.8 gi|110669492|ref|YP_659303.1| - 0.0078 16.4 0.0 0.023 14.9 0.0 1.7 2 0 0 2 2 2 1 Mga helix-turn-helix domain HTH_23 PF13384.1 gi|110669492|ref|YP_659303.1| - 0.015 14.9 0.0 0.025 14.2 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|110669492|ref|YP_659303.1| - 0.025 14.5 0.2 0.08 12.9 0.0 1.9 2 1 1 3 3 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_41 PF14502.1 gi|110669492|ref|YP_659303.1| - 0.037 13.6 0.0 0.1 12.2 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_1 PF00126.22 gi|110669492|ref|YP_659303.1| - 0.047 13.4 0.0 0.097 12.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_34 PF13601.1 gi|110669492|ref|YP_659303.1| - 0.1 12.6 0.2 0.29 11.1 0.0 1.8 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_7 PF02796.10 gi|110669492|ref|YP_659303.1| - 0.11 12.3 0.0 0.37 10.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Gln-synt_C PF00120.19 gi|110669493|ref|YP_659304.1| - 3.2e-101 337.8 0.1 4.1e-101 337.4 0.1 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|110669493|ref|YP_659304.1| - 1.3e-30 104.7 0.0 2.7e-30 103.7 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain PAP2 PF01569.16 gi|110669494|ref|YP_659305.1| - 5.1e-17 61.7 12.5 5.1e-17 61.7 8.7 2.7 2 2 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.1 gi|110669494|ref|YP_659305.1| - 0.00032 20.8 2.2 0.00032 20.8 1.5 3.0 3 1 1 4 4 4 1 PAP2 superfamily C-terminal PAP2_3 PF14378.1 gi|110669494|ref|YP_659305.1| - 0.00094 18.7 10.2 0.00094 18.7 7.1 2.4 2 1 0 2 2 2 1 PAP2 superfamily DUF641 PF04859.7 gi|110669495|ref|YP_659306.1| - 0.066 12.9 0.2 0.099 12.3 0.1 1.3 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) DUF4220 PF13968.1 gi|110669495|ref|YP_659306.1| - 0.26 10.3 2.9 0.11 11.5 0.2 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4220) DUF812 PF05667.6 gi|110669495|ref|YP_659306.1| - 0.61 8.5 4.3 0.74 8.2 3.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF812) IncA PF04156.9 gi|110669495|ref|YP_659306.1| - 1 8.9 7.6 4 6.9 0.1 2.2 2 0 0 2 2 2 0 IncA protein Macoilin PF09726.4 gi|110669495|ref|YP_659306.1| - 1.3 7.2 5.0 1.4 7.1 3.0 1.3 2 0 0 2 2 2 0 Transmembrane protein Pex14_N PF04695.8 gi|110669495|ref|YP_659306.1| - 1.6 8.7 4.2 3.6 7.6 2.9 1.6 1 1 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region TRM PF02005.11 gi|110669496|ref|YP_659307.1| - 2.2e-90 303.3 0.0 2.8e-90 302.9 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase PrmA PF06325.8 gi|110669496|ref|YP_659307.1| - 6e-05 22.3 0.0 8.1e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_26 PF13659.1 gi|110669496|ref|YP_659307.1| - 9.3e-05 22.4 0.6 0.00021 21.2 0.4 2.0 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|110669496|ref|YP_659307.1| - 0.00013 21.4 0.1 0.00022 20.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Zn-ribbon_8 PF09723.5 gi|110669496|ref|YP_659307.1| - 0.0013 18.5 1.5 0.0027 17.6 1.0 1.5 1 0 0 1 1 1 1 Zinc ribbon domain Methyltransf_31 PF13847.1 gi|110669496|ref|YP_659307.1| - 0.0028 17.2 0.0 0.0045 16.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|110669496|ref|YP_659307.1| - 0.038 13.3 0.0 0.059 12.7 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_18 PF12847.2 gi|110669496|ref|YP_659307.1| - 0.045 14.3 0.0 0.087 13.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain SWIM PF04434.12 gi|110669497|ref|YP_659308.1| - 0.86 9.1 4.2 11 5.6 2.9 2.4 1 1 0 1 1 1 0 SWIM zinc finger ADH_N PF08240.7 gi|110669498|ref|YP_659309.1| - 6.5e-29 99.8 0.5 6.5e-29 99.8 0.4 1.9 3 0 0 3 3 3 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|110669498|ref|YP_659309.1| - 2.9e-20 72.1 0.5 4.7e-20 71.4 0.1 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|110669498|ref|YP_659309.1| - 1.1e-07 32.8 0.8 2.3e-07 31.7 0.6 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Pribosyltran_N PF13793.1 gi|110669500|ref|YP_659311.1| - 3e-22 78.5 0.0 4.8e-20 71.4 0.0 2.3 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|110669500|ref|YP_659311.1| - 3.4e-11 42.9 0.9 2.7e-09 36.8 0.1 2.8 2 1 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|110669500|ref|YP_659311.1| - 8.2e-07 28.9 2.1 8.2e-07 28.9 1.4 1.6 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|110669500|ref|YP_659311.1| - 0.00016 20.9 0.1 0.00028 20.1 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|110669500|ref|YP_659311.1| - 0.005 16.1 0.4 1.4 8.1 0.3 2.4 1 1 1 2 2 2 2 Phosphoribosyl transferase HIT PF01230.18 gi|110669501|ref|YP_659312.1| - 2.3e-25 88.9 0.0 2.7e-25 88.7 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|110669501|ref|YP_659312.1| - 2.1e-14 53.7 0.0 2.6e-14 53.4 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|110669501|ref|YP_659312.1| - 0.014 15.0 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 AAA_31 PF13614.1 gi|110669502|ref|YP_659313.1| - 6.2e-09 35.9 0.0 9.2e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|110669502|ref|YP_659313.1| - 1.3e-08 34.4 0.1 2.1e-08 33.7 0.1 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|110669502|ref|YP_659313.1| - 1.9e-05 23.8 1.2 0.012 14.6 0.1 2.2 2 0 0 2 2 2 2 ATPase MipZ YhjQ PF06564.7 gi|110669502|ref|YP_659313.1| - 0.0025 17.2 2.1 0.06 12.7 0.0 2.1 2 0 0 2 2 2 1 YhjQ protein Glyco_transf_4 PF13439.1 gi|110669502|ref|YP_659313.1| - 0.047 13.4 0.1 0.3 10.7 0.0 2.0 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Hydrolase_4 PF12146.3 gi|110669502|ref|YP_659313.1| - 0.082 12.7 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Putative lysophospholipase TFIIB PF00382.14 gi|110669504|ref|YP_659315.1| - 3.7e-36 122.7 0.6 5.1e-19 67.8 0.3 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|110669504|ref|YP_659315.1| - 2.4e-11 42.7 2.9 3.9e-11 42.0 2.0 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.14 gi|110669504|ref|YP_659315.1| - 0.015 15.1 0.5 0.48 10.3 0.0 2.2 2 0 0 2 2 2 0 Cyclin, C-terminal domain DZR PF12773.2 gi|110669504|ref|YP_659315.1| - 0.02 14.7 1.3 0.042 13.6 0.9 1.5 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|110669504|ref|YP_659315.1| - 0.11 11.7 2.9 0.18 11.0 2.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|110669504|ref|YP_659315.1| - 0.11 11.9 0.6 2.5 7.6 0.0 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.6 gi|110669504|ref|YP_659315.1| - 0.29 10.8 1.9 0.32 10.6 0.5 1.7 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|110669504|ref|YP_659315.1| - 1.8 8.6 4.0 0.87 9.5 0.3 2.2 1 1 1 2 2 2 0 Zinc ribbon domain His_Phos_1 PF00300.17 gi|110669505|ref|YP_659316.1| - 2.6e-08 34.0 0.0 3.3e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) CbiA PF01656.18 gi|110669506|ref|YP_659317.1| - 3.1e-15 56.0 0.1 4.4e-15 55.6 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|110669506|ref|YP_659317.1| - 2.5e-07 30.7 0.0 3.7e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|110669506|ref|YP_659317.1| - 0.00011 22.9 0.1 0.0004 21.1 0.1 1.9 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|110669506|ref|YP_659317.1| - 0.00012 21.2 0.2 0.00047 19.3 0.2 1.8 1 1 0 1 1 1 1 ATPase MipZ AAA_33 PF13671.1 gi|110669506|ref|YP_659317.1| - 0.0016 18.2 0.0 0.0026 17.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain ParA PF10609.4 gi|110669506|ref|YP_659317.1| - 0.0024 17.7 1.2 0.0039 17.0 0.0 1.9 2 0 0 2 2 2 1 ParA/MinD ATPase like Fer4_NifH PF00142.13 gi|110669506|ref|YP_659317.1| - 0.0051 16.0 0.1 0.37 9.9 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|110669506|ref|YP_659317.1| - 0.0061 15.9 0.1 0.013 14.8 0.1 1.6 1 1 0 1 1 1 1 YhjQ protein AAA_25 PF13481.1 gi|110669506|ref|YP_659317.1| - 0.022 14.1 2.2 0.067 12.5 1.5 1.9 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|110669506|ref|YP_659317.1| - 0.13 11.8 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.10 gi|110669506|ref|YP_659317.1| - 0.15 11.0 0.7 0.29 10.1 0.5 1.4 1 0 0 1 1 1 0 Anion-transporting ATPase Ferritin PF00210.19 gi|110669508|ref|YP_659319.1| - 0.065 12.9 0.3 0.12 12.1 0.2 1.3 1 0 0 1 1 1 0 Ferritin-like domain DNA_pol3_alpha PF07733.7 gi|110669508|ref|YP_659319.1| - 0.068 11.5 0.5 0.092 11.1 0.3 1.1 1 0 0 1 1 1 0 Bacterial DNA polymerase III alpha subunit LURAP PF14854.1 gi|110669508|ref|YP_659319.1| - 0.1 12.3 0.1 0.21 11.3 0.1 1.5 1 0 0 1 1 1 0 Leucine rich adaptor protein HTH_25 PF13413.1 gi|110669510|ref|YP_659321.1| - 0.1 12.2 0.1 0.38 10.4 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain MCM PF00493.18 gi|110669512|ref|YP_659323.1| - 4.6e-100 334.6 5.6 3.6e-58 196.9 0.0 5.3 5 0 0 5 5 5 4 MCM2/3/5 family Intein_splicing PF14890.1 gi|110669512|ref|YP_659323.1| - 8.8e-21 74.1 2.0 4.3e-06 25.8 0.1 7.3 8 0 0 8 8 8 4 Intein splicing domain MCM_N PF14551.1 gi|110669512|ref|YP_659323.1| - 1.7e-14 54.3 0.2 6.5e-14 52.4 0.2 2.1 1 0 0 1 1 1 1 MCM N-terminal domain LAGLIDADG_3 PF14528.1 gi|110669512|ref|YP_659323.1| - 2.5e-11 43.6 0.0 5.7e-08 32.8 0.0 2.9 2 0 0 2 2 2 2 LAGLIDADG-like domain Hint PF01079.15 gi|110669512|ref|YP_659323.1| - 1.2e-07 31.2 0.0 0.0025 17.0 0.0 4.1 4 0 0 4 4 4 2 Hint module Hom_end PF05204.9 gi|110669512|ref|YP_659323.1| - 0.00031 20.6 2.9 0.28 11.1 0.0 3.6 3 0 0 3 3 3 2 Homing endonuclease BioY PF02632.9 gi|110669514|ref|YP_659325.1| - 7.7e-38 129.4 18.2 1.4e-37 128.6 12.6 1.3 1 0 0 1 1 1 1 BioY family ABC_tran PF00005.22 gi|110669515|ref|YP_659326.1| - 6.4e-29 100.9 0.0 1.4e-28 99.8 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|110669515|ref|YP_659326.1| - 1.3e-08 35.1 0.1 0.0015 18.5 0.1 2.2 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|110669515|ref|YP_659326.1| - 2.3e-07 30.2 0.0 1.5e-06 27.6 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|110669515|ref|YP_659326.1| - 4.4e-05 23.5 0.1 7.4e-05 22.8 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|110669515|ref|YP_659326.1| - 0.00039 19.5 0.0 0.32 9.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|110669515|ref|YP_659326.1| - 0.00042 19.7 0.1 0.00087 18.7 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|110669515|ref|YP_659326.1| - 0.00094 18.8 0.1 0.0022 17.6 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_10 PF12846.2 gi|110669515|ref|YP_659326.1| - 0.0015 18.0 0.3 1 8.7 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_28 PF13521.1 gi|110669515|ref|YP_659326.1| - 0.0016 18.4 0.1 0.0031 17.5 0.1 1.5 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|110669515|ref|YP_659326.1| - 0.003 17.4 0.3 0.026 14.4 0.2 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|110669515|ref|YP_659326.1| - 0.0035 17.6 0.2 0.0049 17.2 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|110669515|ref|YP_659326.1| - 0.0042 15.6 0.0 0.013 13.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|110669515|ref|YP_659326.1| - 0.0091 15.6 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_22 PF13401.1 gi|110669515|ref|YP_659326.1| - 0.012 15.6 0.1 0.044 13.9 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|110669515|ref|YP_659326.1| - 0.015 14.8 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain Etmic-2 PF06670.6 gi|110669515|ref|YP_659326.1| - 0.017 13.8 0.2 0.032 12.9 0.1 1.5 1 1 0 1 1 1 0 Microneme protein Etmic-2 Miro PF08477.8 gi|110669515|ref|YP_659326.1| - 0.026 15.0 0.0 0.043 14.3 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein MobB PF03205.9 gi|110669515|ref|YP_659326.1| - 0.026 14.2 0.1 0.092 12.4 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|110669515|ref|YP_659326.1| - 0.031 13.6 0.2 0.062 12.7 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|110669515|ref|YP_659326.1| - 0.051 13.4 0.0 0.092 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|110669515|ref|YP_659326.1| - 0.053 12.4 0.2 0.63 8.8 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_5 PF07728.9 gi|110669515|ref|YP_659326.1| - 0.054 13.2 0.0 0.15 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|110669515|ref|YP_659326.1| - 0.056 14.2 0.2 0.2 12.4 0.1 1.9 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|110669515|ref|YP_659326.1| - 0.056 12.8 0.2 0.22 10.8 0.0 1.9 2 1 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|110669515|ref|YP_659326.1| - 0.058 12.5 0.0 0.09 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|110669515|ref|YP_659326.1| - 0.061 13.1 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|110669515|ref|YP_659326.1| - 0.11 11.3 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain FtsK_SpoIIIE PF01580.13 gi|110669515|ref|YP_659326.1| - 0.11 11.8 0.0 0.24 10.8 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family PduV-EutP PF10662.4 gi|110669515|ref|YP_659326.1| - 0.14 11.6 0.0 0.34 10.3 0.0 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation G-alpha PF00503.15 gi|110669515|ref|YP_659326.1| - 0.15 10.7 0.0 0.21 10.2 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit DUF3584 PF12128.3 gi|110669515|ref|YP_659326.1| - 0.2 8.9 0.0 0.27 8.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) CbiQ PF02361.11 gi|110669516|ref|YP_659327.1| - 1.2e-12 47.8 11.6 1.2e-12 47.8 8.1 1.7 2 1 0 2 2 2 1 Cobalt transport protein Fer4_7 PF12838.2 gi|110669517|ref|YP_659328.1| - 2.5e-13 50.1 21.0 1.1e-08 35.3 4.0 1.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|110669517|ref|YP_659328.1| - 1.1e-12 46.9 12.5 7.3e-07 28.5 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|110669517|ref|YP_659328.1| - 2e-10 40.7 4.8 2.9e-10 40.2 3.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|110669517|ref|YP_659328.1| - 4.1e-09 35.9 15.5 3.2e-05 23.5 3.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|110669517|ref|YP_659328.1| - 3.4e-08 33.1 18.3 2e-06 27.5 5.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|110669517|ref|YP_659328.1| - 8.9e-08 31.8 7.0 1.4e-07 31.2 4.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|110669517|ref|YP_659328.1| - 9.1e-08 31.8 7.5 0.00023 21.2 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|110669517|ref|YP_659328.1| - 1.9e-07 30.6 10.1 0.0016 18.2 0.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|110669517|ref|YP_659328.1| - 9.8e-07 28.7 9.8 6.4e-06 26.1 3.5 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|110669517|ref|YP_659328.1| - 6.1e-06 26.8 5.9 0.00029 21.5 0.8 2.5 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|110669517|ref|YP_659328.1| - 9.1e-06 26.0 4.0 0.0016 18.7 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|110669517|ref|YP_659328.1| - 2.3e-05 24.6 1.0 0.1 12.9 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|110669517|ref|YP_659328.1| - 3.3e-05 24.1 11.9 0.0047 17.3 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|110669517|ref|YP_659328.1| - 0.0024 18.2 14.6 0.038 14.3 10.1 2.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|110669517|ref|YP_659328.1| - 0.0072 16.8 14.0 0.4 11.2 9.7 2.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain GATase PF00117.23 gi|110669518|ref|YP_659329.1| - 9.9e-25 87.1 0.0 1.3e-24 86.7 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|110669518|ref|YP_659329.1| - 4.7e-10 39.2 0.1 2.7e-09 36.7 0.0 2.1 1 1 0 1 1 1 1 Peptidase C26 HTS PF04204.11 gi|110669518|ref|YP_659329.1| - 0.00046 19.0 0.0 0.001 17.8 0.0 1.5 1 1 0 1 1 1 1 Homoserine O-succinyltransferase Abhydrolase_6 PF12697.2 gi|110669519|ref|YP_659330.1| - 5.6e-33 114.7 5.3 6.4e-33 114.5 3.7 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|110669519|ref|YP_659330.1| - 1.7e-18 67.0 0.0 4.1e-18 65.7 0.0 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|110669519|ref|YP_659330.1| - 4.2e-14 52.5 0.2 1.3e-13 50.9 0.1 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.5 gi|110669519|ref|YP_659330.1| - 0.00058 19.7 0.0 0.001 18.9 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein Peptidase_S15 PF02129.13 gi|110669519|ref|YP_659330.1| - 0.0016 17.8 0.2 0.48 9.7 0.0 2.1 2 0 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.3 gi|110669519|ref|YP_659330.1| - 0.048 13.5 0.0 0.14 12.0 0.0 1.8 2 0 0 2 2 2 0 Putative lysophospholipase tRNA-synt_2c PF01411.14 gi|110669520|ref|YP_659331.1| - 1.1e-108 363.9 0.0 1.5e-108 363.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|110669520|ref|YP_659331.1| - 3.9e-13 49.0 1.7 8.1e-13 48.0 1.2 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|110669520|ref|YP_659331.1| - 1.3e-10 40.8 3.6 2.9e-10 39.6 2.5 1.6 1 0 0 1 1 1 1 DHHA1 domain ActA PF05058.7 gi|110669520|ref|YP_659331.1| - 0.2 9.6 0.5 0.31 8.9 0.3 1.2 1 0 0 1 1 1 0 ActA Protein Rep_fac_C PF08542.6 gi|110669521|ref|YP_659332.1| - 4.5e-21 74.6 0.0 1e-20 73.4 0.0 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.1 gi|110669521|ref|YP_659332.1| - 9.4e-16 57.8 0.0 5.1e-14 52.2 0.0 2.5 3 0 0 3 3 3 1 DNA polymerase III, delta subunit AAA PF00004.24 gi|110669521|ref|YP_659332.1| - 1.4e-09 38.2 3.4 1.7e-08 34.7 0.0 3.2 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta PF06144.8 gi|110669521|ref|YP_659332.1| - 1.9e-06 27.5 0.0 4.6e-06 26.2 0.0 1.6 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Rad17 PF03215.10 gi|110669521|ref|YP_659332.1| - 6.4e-06 25.1 0.0 0.068 11.8 0.0 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|110669521|ref|YP_659332.1| - 0.00066 18.7 0.1 0.024 13.6 0.0 2.8 3 0 0 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|110669521|ref|YP_659332.1| - 0.002 18.1 0.0 3 7.7 0.0 2.6 2 0 0 2 2 2 2 AAA ATPase domain Intein_splicing PF14890.1 gi|110669521|ref|YP_659332.1| - 0.0045 15.9 0.0 0.34 9.7 0.0 2.5 2 0 0 2 2 2 1 Intein splicing domain AAA_22 PF13401.1 gi|110669521|ref|YP_659332.1| - 0.0076 16.3 0.1 0.14 12.2 0.0 2.7 2 0 0 2 2 2 1 AAA domain Acetyltransf_7 PF13508.1 gi|110669522|ref|YP_659333.1| - 4.2e-08 33.2 0.0 7.1e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|110669522|ref|YP_659333.1| - 0.00034 20.5 0.0 0.00072 19.5 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|110669522|ref|YP_659333.1| - 0.018 15.1 0.0 0.038 14.1 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain PGM_PMM_I PF02878.11 gi|110669523|ref|YP_659334.1| - 3.2e-37 127.0 0.0 5.7e-37 126.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|110669523|ref|YP_659334.1| - 2.6e-25 88.7 0.1 7.1e-25 87.3 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|110669523|ref|YP_659334.1| - 1.5e-23 82.9 0.0 3.1e-23 81.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|110669523|ref|YP_659334.1| - 6.5e-14 51.6 0.2 1.9e-13 50.1 0.0 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain GIY-YIG PF01541.19 gi|110669525|ref|YP_659336.1| - 1.7e-13 50.7 0.7 2e-13 50.5 0.5 1.1 1 0 0 1 1 1 1 GIY-YIG catalytic domain T5orf172 PF10544.4 gi|110669525|ref|YP_659336.1| - 0.0013 19.0 0.4 0.0017 18.7 0.3 1.1 1 0 0 1 1 1 1 T5orf172 domain MUG113 PF13455.1 gi|110669525|ref|YP_659336.1| - 0.023 15.1 0.3 0.039 14.4 0.2 1.6 1 1 0 1 1 1 0 Meiotically up-regulated gene 113 SurE PF01975.12 gi|110669526|ref|YP_659337.1| - 7.2e-45 152.7 0.0 9.2e-45 152.3 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE DZR PF12773.2 gi|110669527|ref|YP_659338.1| - 0.0011 18.7 0.5 0.0013 18.5 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon PhnA_Zn_Ribbon PF08274.7 gi|110669527|ref|YP_659338.1| - 0.002 17.8 0.2 0.0056 16.4 0.2 1.6 1 1 0 1 1 1 1 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.1 gi|110669527|ref|YP_659338.1| - 0.0056 15.8 1.6 0.28 10.4 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain ATPase-cat_bd PF12156.3 gi|110669527|ref|YP_659338.1| - 0.013 15.9 0.5 0.014 15.9 0.3 1.1 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase OrfB_Zn_ribbon PF07282.6 gi|110669527|ref|YP_659338.1| - 0.014 14.9 0.6 0.019 14.5 0.4 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|110669527|ref|YP_659338.1| - 0.017 14.8 0.3 0.022 14.4 0.2 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) TerY-C PF15616.1 gi|110669527|ref|YP_659338.1| - 0.032 14.1 0.3 0.035 14.0 0.2 1.1 1 0 0 1 1 1 0 TerY-C metal binding domain zinc_ribbon_2 PF13240.1 gi|110669527|ref|YP_659338.1| - 0.035 13.5 3.9 0.21 11.1 2.7 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Ogr_Delta PF04606.7 gi|110669527|ref|YP_659338.1| - 0.057 13.0 2.5 1.3 8.6 0.4 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Zn_Tnp_IS1595 PF12760.2 gi|110669527|ref|YP_659338.1| - 0.075 12.8 3.2 0.97 9.2 2.1 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|110669527|ref|YP_659338.1| - 0.091 12.4 1.9 0.31 10.7 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Arc_trans_TRASH PF08394.5 gi|110669527|ref|YP_659338.1| - 0.11 12.6 0.6 0.39 10.9 0.4 1.8 1 1 0 1 1 1 0 Archaeal TRASH domain zf-ISL3 PF14690.1 gi|110669527|ref|YP_659338.1| - 0.14 12.2 0.5 15 5.6 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Lar_restr_allev PF14354.1 gi|110669527|ref|YP_659338.1| - 0.18 12.1 1.9 0.29 11.4 1.3 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_5 PF13719.1 gi|110669527|ref|YP_659338.1| - 0.2 11.2 2.9 0.37 10.4 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|110669527|ref|YP_659338.1| - 0.21 11.3 1.1 0.96 9.1 0.7 1.9 1 1 0 1 1 1 0 Nudix N-terminal zf-HYPF PF07503.7 gi|110669527|ref|YP_659338.1| - 0.28 10.6 4.1 4.6 6.7 0.2 2.2 2 0 0 2 2 2 0 HypF finger Zn-ribbon_8 PF09723.5 gi|110669527|ref|YP_659338.1| - 0.31 11.0 3.3 4.2 7.3 2.2 2.1 1 1 0 1 1 1 0 Zinc ribbon domain UPF0547 PF10571.4 gi|110669527|ref|YP_659338.1| - 0.46 10.2 5.1 2 8.1 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF1610 PF07754.6 gi|110669527|ref|YP_659338.1| - 0.5 10.5 4.1 1.1 9.3 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) DUF164 PF02591.10 gi|110669527|ref|YP_659338.1| - 0.51 10.1 2.6 1.4 8.8 1.2 2.0 1 1 0 1 1 1 0 Putative zinc ribbon domain Sgf11 PF08209.6 gi|110669527|ref|YP_659338.1| - 0.67 9.3 3.5 0.86 8.9 0.1 2.3 2 1 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Prim_Zn_Ribbon PF08273.7 gi|110669527|ref|YP_659338.1| - 1.1 9.3 6.6 1.5 8.9 0.2 2.2 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase zf-RING_3 PF14369.1 gi|110669527|ref|YP_659338.1| - 1.2 9.1 3.7 13 5.8 2.5 2.1 1 1 1 2 2 2 0 zinc-finger DUF35_N PF12172.3 gi|110669527|ref|YP_659338.1| - 3.7 7.5 4.9 10 6.1 0.4 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF1931 PF09123.6 gi|110669528|ref|YP_659339.1| - 0.00028 20.8 0.5 0.00031 20.6 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) Histone PF00125.19 gi|110669528|ref|YP_659339.1| - 0.00054 20.0 0.1 0.00073 19.6 0.0 1.5 1 1 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CBFD_NFYB_HMF PF00808.18 gi|110669528|ref|YP_659339.1| - 0.0041 17.1 0.1 0.007 16.3 0.1 1.6 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Rib_5-P_isom_A PF06026.9 gi|110669529|ref|YP_659340.1| - 4.9e-58 195.2 0.2 6e-58 194.9 0.1 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|110669529|ref|YP_659340.1| - 1.4e-07 31.3 0.6 2.8e-05 23.7 0.0 2.4 1 1 1 2 2 2 2 DeoR C terminal sensor domain Sugar-bind PF04198.8 gi|110669529|ref|YP_659340.1| - 0.053 12.4 0.1 0.15 10.9 0.1 1.7 1 1 1 2 2 2 0 Putative sugar-binding domain AAA_16 PF13191.1 gi|110669530|ref|YP_659341.1| - 5e-15 55.9 0.2 1e-13 51.7 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|110669530|ref|YP_659341.1| - 3e-10 40.3 0.0 6.5e-10 39.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.6 gi|110669530|ref|YP_659341.1| - 1.4e-06 27.9 0.1 8.3e-06 25.4 0.0 2.4 2 0 0 2 2 2 1 CDC6, C terminal AAA PF00004.24 gi|110669530|ref|YP_659341.1| - 4.8e-06 26.8 0.0 1.2e-05 25.5 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|110669530|ref|YP_659341.1| - 3.5e-05 23.6 0.0 6.8e-05 22.6 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase AAA_19 PF13245.1 gi|110669530|ref|YP_659341.1| - 9.8e-05 22.0 0.2 0.00025 20.7 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_35 PF14516.1 gi|110669530|ref|YP_659341.1| - 0.00012 20.7 0.0 0.02 13.5 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain NACHT PF05729.7 gi|110669530|ref|YP_659341.1| - 0.00026 20.6 0.0 0.00045 19.9 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_17 PF13207.1 gi|110669530|ref|YP_659341.1| - 0.00032 21.4 0.1 0.0013 19.5 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|110669530|ref|YP_659341.1| - 0.0004 20.2 0.1 0.002 18.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|110669530|ref|YP_659341.1| - 0.00068 19.5 0.0 0.0013 18.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|110669530|ref|YP_659341.1| - 0.00078 19.0 0.0 0.001 18.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|110669530|ref|YP_659341.1| - 0.0049 17.1 0.0 0.023 14.9 0.0 2.3 2 1 0 2 2 1 1 AAA domain IstB_IS21 PF01695.12 gi|110669530|ref|YP_659341.1| - 0.0073 15.7 1.3 0.13 11.6 0.9 2.2 1 1 0 1 1 1 1 IstB-like ATP binding protein NTPase_1 PF03266.10 gi|110669530|ref|YP_659341.1| - 0.0085 15.8 0.2 0.017 14.7 0.1 1.5 1 0 0 1 1 1 1 NTPase RNA_helicase PF00910.17 gi|110669530|ref|YP_659341.1| - 0.01 16.0 0.0 0.019 15.1 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA_28 PF13521.1 gi|110669530|ref|YP_659341.1| - 0.014 15.3 0.2 0.028 14.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|110669530|ref|YP_659341.1| - 0.017 14.0 0.0 0.029 13.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein RuvB_N PF05496.7 gi|110669530|ref|YP_659341.1| - 0.019 13.9 0.0 0.039 12.9 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus Rad17 PF03215.10 gi|110669530|ref|YP_659341.1| - 0.02 13.5 0.0 0.03 13.0 0.0 1.4 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_30 PF13604.1 gi|110669530|ref|YP_659341.1| - 0.024 14.2 0.2 0.072 12.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|110669530|ref|YP_659341.1| - 0.031 13.1 0.0 0.043 12.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.9 gi|110669530|ref|YP_659341.1| - 0.036 13.7 0.2 0.14 11.9 0.0 2.2 2 1 0 2 2 1 0 AAA domain (dynein-related subfamily) DUF2075 PF09848.4 gi|110669530|ref|YP_659341.1| - 0.038 12.9 0.0 0.064 12.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.13 gi|110669530|ref|YP_659341.1| - 0.04 13.4 0.0 0.064 12.7 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Sigma54_activat PF00158.21 gi|110669530|ref|YP_659341.1| - 0.047 13.1 0.0 0.085 12.3 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_25 PF13481.1 gi|110669530|ref|YP_659341.1| - 0.056 12.8 0.1 0.38 10.1 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|110669530|ref|YP_659341.1| - 0.072 12.6 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_32 PF13654.1 gi|110669530|ref|YP_659341.1| - 0.073 11.7 0.1 12 4.4 0.0 2.7 3 0 0 3 3 3 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|110669530|ref|YP_659341.1| - 0.081 12.3 0.0 0.2 11.1 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family cobW PF02492.14 gi|110669530|ref|YP_659341.1| - 0.089 12.2 0.1 0.18 11.2 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF835 PF05763.7 gi|110669530|ref|YP_659341.1| - 0.11 12.0 0.3 0.2 11.1 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF835) DUF815 PF05673.8 gi|110669530|ref|YP_659341.1| - 0.12 11.3 0.0 0.52 9.1 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) Phage-MuB_C PF09077.6 gi|110669530|ref|YP_659341.1| - 0.13 11.9 0.0 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 Mu B transposition protein, C terminal MutS_V PF00488.16 gi|110669531|ref|YP_659342.1| - 3.4e-09 36.4 0.0 6.4e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 MutS domain V HHH PF00633.18 gi|110669531|ref|YP_659342.1| - 0.0065 16.1 0.0 0.022 14.4 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif IMS_HHH PF11798.3 gi|110669531|ref|YP_659342.1| - 0.0078 16.2 0.0 0.035 14.1 0.0 2.1 2 0 0 2 2 2 1 IMS family HHH motif AAA PF00004.24 gi|110669531|ref|YP_659342.1| - 0.02 15.0 0.9 0.2 11.8 0.0 2.9 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) HHH_5 PF14520.1 gi|110669531|ref|YP_659342.1| - 0.077 13.1 0.3 0.077 13.1 0.2 2.9 3 0 0 3 3 3 0 Helix-hairpin-helix domain AAA_29 PF13555.1 gi|110669531|ref|YP_659342.1| - 0.099 12.1 0.1 0.21 11.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|110669531|ref|YP_659342.1| - 0.12 12.3 0.0 6.4 6.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain NAD_synthase PF02540.12 gi|110669532|ref|YP_659343.1| - 5.8e-08 31.9 0.0 1.1e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.16 gi|110669532|ref|YP_659343.1| - 1.4e-07 31.3 0.1 2.2e-07 30.6 0.1 1.4 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|110669532|ref|YP_659343.1| - 7.1e-07 28.1 0.0 2.3e-05 23.1 0.0 2.2 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.8 gi|110669532|ref|YP_659343.1| - 0.00012 21.4 0.0 0.00062 19.1 0.0 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|110669532|ref|YP_659343.1| - 0.0008 18.9 0.0 0.0016 17.9 0.0 1.5 1 0 0 1 1 1 1 PP-loop family DUF208 PF02677.9 gi|110669532|ref|YP_659343.1| - 0.0056 16.4 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized BCR, COG1636 TatC PF00902.13 gi|110669533|ref|YP_659344.1| - 2.7e-34 118.4 14.0 3.4e-34 118.1 9.7 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) TatC PF00902.13 gi|110669534|ref|YP_659345.1| - 2.4e-69 232.9 41.2 9.5e-38 129.7 13.2 2.2 2 0 0 2 2 2 2 Sec-independent protein translocase protein (TatC) CDC45 PF02724.9 gi|110669534|ref|YP_659345.1| - 0.32 8.9 0.5 0.45 8.4 0.4 1.1 1 0 0 1 1 1 0 CDC45-like protein HCV_env PF01539.12 gi|110669534|ref|YP_659345.1| - 1.2 8.5 5.3 11 5.3 1.3 2.9 2 1 0 2 2 2 0 Hepatitis C virus envelope glycoprotein E1 FtsJ PF01728.14 gi|110669535|ref|YP_659346.1| - 1.3e-51 175.1 0.0 1.8e-51 174.7 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.15 gi|110669535|ref|YP_659346.1| - 1.3e-09 37.6 0.5 2.5e-09 36.7 0.4 1.5 1 0 0 1 1 1 1 TRAM domain Methyltransf_31 PF13847.1 gi|110669535|ref|YP_659346.1| - 0.00069 19.2 0.0 0.0019 17.8 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|110669535|ref|YP_659346.1| - 0.00069 19.3 0.0 0.0035 17.0 0.0 2.1 1 1 1 2 2 2 1 Methyltransferase domain NSP13 PF06460.7 gi|110669535|ref|YP_659346.1| - 0.002 17.0 0.0 0.0025 16.7 0.0 1.1 1 0 0 1 1 1 1 Coronavirus NSP13 CDC48_N PF02359.13 gi|110669535|ref|YP_659346.1| - 0.047 13.6 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Methyltransf_26 PF13659.1 gi|110669535|ref|YP_659346.1| - 0.061 13.3 0.1 0.18 11.8 0.1 1.7 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|110669535|ref|YP_659346.1| - 0.11 13.1 0.1 0.21 12.1 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain CmcI PF04989.7 gi|110669535|ref|YP_659346.1| - 0.14 11.4 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Cephalosporin hydroxylase PCNA_N PF00705.13 gi|110669536|ref|YP_659347.1| - 3.6e-09 36.2 1.5 1.5e-08 34.2 0.3 2.1 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|110669536|ref|YP_659347.1| - 4.9e-09 36.1 0.0 2.4e-08 33.9 0.0 2.1 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain DNA_pol3_beta_3 PF02768.10 gi|110669536|ref|YP_659347.1| - 0.003 17.1 0.4 0.013 15.0 0.1 2.0 2 1 0 2 2 2 1 DNA polymerase III beta subunit, C-terminal domain GST_C_2 PF13410.1 gi|110669537|ref|YP_659348.1| - 0.057 13.3 0.1 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain DNA_primase_lrg PF04104.9 gi|110669538|ref|YP_659349.1| - 1.3e-18 67.2 0.0 2.5e-18 66.2 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit ABC2_membrane PF01061.19 gi|110669539|ref|YP_659350.1| - 0.22 10.6 3.9 0.26 10.3 2.7 1.0 1 0 0 1 1 1 0 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|110669539|ref|YP_659350.1| - 0.26 10.0 3.1 0.26 10.0 2.1 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF3481 PF11980.3 gi|110669539|ref|YP_659350.1| - 2.7 7.8 4.5 1.2 8.9 0.2 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3481) PepSY_TM PF03929.11 gi|110669539|ref|YP_659350.1| - 9.9 6.7 7.4 6.4 7.3 1.4 2.2 2 0 0 2 2 2 0 PepSY-associated TM helix Hjc PF01870.13 gi|110669540|ref|YP_659351.1| - 1.4e-27 95.1 0.0 1.7e-27 94.7 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) DoxX PF07681.7 gi|110669541|ref|YP_659352.1| - 1.1e-06 28.9 2.2 1.1e-06 28.9 1.5 1.4 2 0 0 2 2 2 1 DoxX HR_lesion PF05514.6 gi|110669541|ref|YP_659352.1| - 2.1e-05 24.3 0.0 2.5e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 HR-like lesion-inducing SURF4 PF02077.10 gi|110669541|ref|YP_659352.1| - 0.0008 18.8 0.0 0.00092 18.6 0.0 1.2 1 0 0 1 1 1 1 SURF4 family Consortin_C PF15281.1 gi|110669541|ref|YP_659352.1| - 0.11 11.9 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Consortin C-terminus DUF2975 PF11188.3 gi|110669541|ref|YP_659352.1| - 0.12 12.0 0.3 3.9 7.1 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2975) FKBP_C PF00254.23 gi|110669542|ref|YP_659353.1| - 3.7e-20 71.7 0.0 5.7e-20 71.1 0.0 1.3 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase YajC PF02699.10 gi|110669542|ref|YP_659353.1| - 0.018 14.6 0.0 0.038 13.6 0.0 1.5 1 0 0 1 1 1 0 Preprotein translocase subunit UvrC_HhH_N PF08459.6 gi|110669544|ref|YP_659355.1| - 7.4e-40 136.0 0.0 1.5e-39 134.9 0.0 1.6 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH PF00633.18 gi|110669544|ref|YP_659355.1| - 3.4e-10 39.0 0.0 1.6e-06 27.4 0.0 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|110669544|ref|YP_659355.1| - 1.7e-09 37.7 0.0 5.2e-09 36.1 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|110669544|ref|YP_659355.1| - 2.1e-09 37.1 0.0 6e-09 35.6 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif UVR PF02151.14 gi|110669544|ref|YP_659355.1| - 6.1e-09 35.0 4.9 3.8e-08 32.5 1.1 2.9 2 0 0 2 2 2 1 UvrB/uvrC motif GIY-YIG PF01541.19 gi|110669544|ref|YP_659355.1| - 1.8e-06 28.2 0.0 4.1e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 GIY-YIG catalytic domain 5_3_exonuc PF01367.15 gi|110669544|ref|YP_659355.1| - 0.00099 19.3 0.0 0.0086 16.2 0.0 2.3 1 1 1 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold IMS_HHH PF11798.3 gi|110669544|ref|YP_659355.1| - 0.0067 16.4 0.0 1.9 8.6 0.0 2.7 2 0 0 2 2 2 1 IMS family HHH motif HHH_8 PF14716.1 gi|110669544|ref|YP_659355.1| - 0.066 13.4 0.0 7.7 6.7 0.0 3.2 3 0 0 3 3 3 0 Helix-hairpin-helix domain Transposase_20 PF02371.11 gi|110669544|ref|YP_659355.1| - 0.091 12.8 0.0 9 6.4 0.0 2.6 1 1 1 2 2 2 0 Transposase IS116/IS110/IS902 family ABC_tran PF00005.22 gi|110669545|ref|YP_659356.1| - 2.8e-26 92.4 0.0 5.1e-26 91.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|110669545|ref|YP_659356.1| - 5e-12 46.3 0.0 8.6e-08 32.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|110669545|ref|YP_659356.1| - 0.0016 18.9 0.0 0.003 18.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) DUF258 PF03193.11 gi|110669545|ref|YP_659356.1| - 0.0034 16.6 0.0 0.0099 15.0 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|110669545|ref|YP_659356.1| - 0.0064 16.0 0.1 0.014 14.9 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|110669545|ref|YP_659356.1| - 0.015 15.2 1.0 0.16 11.9 0.2 2.7 1 1 1 2 2 2 0 50S ribosome-binding GTPase AAA_23 PF13476.1 gi|110669545|ref|YP_659356.1| - 0.027 14.8 0.1 0.054 13.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|110669545|ref|YP_659356.1| - 0.04 13.1 0.0 9.3 5.4 0.0 2.7 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|110669545|ref|YP_659356.1| - 0.048 13.6 0.0 0.14 12.0 0.0 1.8 1 1 1 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|110669545|ref|YP_659356.1| - 0.049 13.0 0.0 0.29 10.5 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain ArgK PF03308.11 gi|110669545|ref|YP_659356.1| - 0.055 12.2 0.2 0.055 12.2 0.1 2.4 2 1 0 2 2 2 0 ArgK protein AAA_22 PF13401.1 gi|110669545|ref|YP_659356.1| - 0.14 12.2 0.3 3.9 7.6 0.0 2.8 3 1 0 3 3 3 0 AAA domain ABC2_membrane_2 PF12679.2 gi|110669546|ref|YP_659357.1| - 4.8e-44 150.2 22.1 5.5e-44 150.0 15.3 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|110669546|ref|YP_659357.1| - 3.2e-09 36.2 17.1 3.2e-09 36.2 11.8 2.1 2 1 1 3 3 3 1 ABC-2 type transporter ABC2_membrane_4 PF12730.2 gi|110669546|ref|YP_659357.1| - 2.8e-07 29.9 34.2 1.7e-06 27.4 23.2 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|110669546|ref|YP_659357.1| - 6.5e-07 28.8 14.1 6.5e-07 28.8 9.8 2.4 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|110669546|ref|YP_659357.1| - 4.1e-06 26.0 17.7 4.1e-06 26.0 12.3 2.9 1 1 2 3 3 3 2 ABC-2 family transporter protein DNA_ligase_aden PF01653.13 gi|110669547|ref|YP_659358.1| - 4.5e-100 334.6 0.0 6.8e-100 334.0 0.0 1.2 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.11 gi|110669547|ref|YP_659358.1| - 3.2e-28 97.2 1.8 9.4e-28 95.7 1.3 1.8 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.2 gi|110669547|ref|YP_659358.1| - 4e-21 74.6 0.1 2.8e-18 65.5 0.0 3.0 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|110669547|ref|YP_659358.1| - 8.3e-17 61.1 1.7 1e-09 38.4 0.1 3.7 4 0 0 4 4 4 2 Helix-hairpin-helix domain BRCT PF00533.21 gi|110669547|ref|YP_659358.1| - 2.1e-09 37.3 0.0 4.7e-09 36.2 0.0 1.6 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain DNA_ligase_ZBD PF03119.11 gi|110669547|ref|YP_659358.1| - 3.1e-05 23.5 1.5 7.4e-05 22.3 1.0 1.7 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain HHH PF00633.18 gi|110669547|ref|YP_659358.1| - 0.011 15.4 0.1 20 5.1 0.0 3.9 4 0 0 4 4 4 0 Helix-hairpin-helix motif Cys_Met_Meta_PP PF01053.15 gi|110669548|ref|YP_659359.1| - 2e-126 421.3 0.0 2.4e-126 421.1 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|110669548|ref|YP_659359.1| - 1.5e-07 30.7 0.1 3.9e-07 29.3 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|110669548|ref|YP_659359.1| - 1.2e-05 24.2 0.1 2.1e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|110669548|ref|YP_659359.1| - 7.6e-05 21.9 0.2 0.00013 21.1 0.1 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|110669548|ref|YP_659359.1| - 0.00067 18.7 1.7 0.0012 17.9 1.2 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Abhydrolase_1 PF00561.15 gi|110669549|ref|YP_659360.1| - 4.4e-22 78.7 0.2 5.7e-22 78.4 0.1 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|110669549|ref|YP_659360.1| - 2e-17 63.8 4.3 3e-17 63.2 3.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|110669549|ref|YP_659360.1| - 0.00065 19.4 0.0 0.0027 17.4 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Esterase PF00756.15 gi|110669549|ref|YP_659360.1| - 0.0012 18.3 0.0 0.0019 17.6 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Peptidase_S9 PF00326.16 gi|110669549|ref|YP_659360.1| - 0.004 16.3 0.4 0.029 13.6 0.0 2.2 2 1 0 2 2 2 1 Prolyl oligopeptidase family Tannase PF07519.6 gi|110669549|ref|YP_659360.1| - 0.0046 15.7 0.1 0.01 14.5 0.0 1.5 1 0 0 1 1 1 1 Tannase and feruloyl esterase Abhydrolase_4 PF08386.5 gi|110669549|ref|YP_659360.1| - 0.027 14.3 0.0 0.078 12.8 0.0 1.7 1 0 0 1 1 1 0 TAP-like protein MFS_1 PF07690.11 gi|110669550|ref|YP_659361.1| - 1.7e-31 109.2 57.6 1e-24 86.9 31.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|110669550|ref|YP_659361.1| - 3.6e-05 22.5 16.5 3.6e-05 22.5 11.4 2.3 2 0 0 2 2 2 1 Sugar (and other) transporter DUF2852 PF11014.3 gi|110669550|ref|YP_659361.1| - 0.2 11.5 0.2 0.48 10.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2852) DHH PF01368.15 gi|110669551|ref|YP_659362.1| - 1.7e-14 53.7 0.1 2.6e-14 53.0 0.1 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|110669551|ref|YP_659362.1| - 1.4e-13 50.3 0.1 3.3e-13 49.1 0.1 1.7 1 0 0 1 1 1 1 DHHA1 domain Diphtheria_T PF02764.9 gi|110669551|ref|YP_659362.1| - 0.13 12.0 0.3 0.25 11.1 0.2 1.4 1 0 0 1 1 1 0 Diphtheria toxin, T domain HAMP PF00672.20 gi|110669552|ref|YP_659363.1| - 0.019 15.1 0.3 0.025 14.7 0.2 1.2 1 0 0 1 1 1 0 HAMP domain PRRSV_2b PF07069.6 gi|110669552|ref|YP_659363.1| - 0.044 14.0 1.2 0.056 13.7 0.8 1.2 1 0 0 1 1 1 0 Porcine reproductive and respiratory syndrome virus 2b PHO4 PF01384.15 gi|110669553|ref|YP_659364.1| - 4.1e-45 153.8 34.6 4.1e-45 153.8 24.0 1.4 1 1 0 1 1 1 1 Phosphate transporter family MASE2 PF05230.6 gi|110669553|ref|YP_659364.1| - 0.12 12.3 2.7 1.8 8.5 0.3 3.4 2 1 0 2 2 2 0 MASE2 domain DUF21 PF01595.15 gi|110669554|ref|YP_659365.1| - 2.7e-54 183.2 0.2 3.7e-54 182.7 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|110669554|ref|YP_659365.1| - 2.4e-19 68.8 1.1 2.4e-19 68.8 0.7 1.9 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.23 gi|110669554|ref|YP_659365.1| - 1.3e-17 63.3 8.9 1.3e-09 37.6 0.4 3.2 4 0 0 4 4 4 2 CBS domain GST_N_3 PF13417.1 gi|110669555|ref|YP_659366.1| - 5.8e-16 58.4 0.0 7.2e-16 58.1 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|110669555|ref|YP_659366.1| - 5.8e-13 48.6 0.0 7e-13 48.3 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|110669555|ref|YP_659366.1| - 8.5e-13 48.0 0.0 1.1e-12 47.6 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N PF02798.15 gi|110669555|ref|YP_659366.1| - 0.00017 21.6 0.0 0.00021 21.4 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|110669555|ref|YP_659366.1| - 0.014 15.6 0.0 0.016 15.4 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) AhpC-TSA PF00578.16 gi|110669556|ref|YP_659367.1| - 5.6e-15 55.1 0.0 7.1e-15 54.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|110669556|ref|YP_659367.1| - 0.002 17.7 0.0 0.0036 16.8 0.0 1.4 1 1 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|110669556|ref|YP_659367.1| - 0.0087 15.9 0.0 0.5 10.3 0.0 2.1 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme Sua5_yciO_yrdC PF01300.13 gi|110669557|ref|YP_659368.1| - 4.1e-48 162.9 0.2 4.9e-48 162.7 0.1 1.1 1 0 0 1 1 1 1 Telomere recombination tRNA-synt_2b PF00587.20 gi|110669558|ref|YP_659369.1| - 4.5e-52 176.1 0.0 7.4e-52 175.4 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|110669558|ref|YP_659369.1| - 6.6e-19 67.6 0.1 1.5e-18 66.4 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain zinc_ribbon_4 PF13717.1 gi|110669558|ref|YP_659369.1| - 0.044 13.4 0.6 2.3 7.9 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|110669558|ref|YP_659369.1| - 0.048 13.2 0.6 2.2 7.9 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|110669558|ref|YP_659369.1| - 0.093 11.9 2.5 0.61 9.3 1.6 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|110669558|ref|YP_659369.1| - 0.18 11.8 0.1 5.7 6.9 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain DUF3732 PF12532.3 gi|110669559|ref|YP_659370.1| - 0.13 11.8 0.0 0.19 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3732) Arginosuc_synth PF00764.14 gi|110669560|ref|YP_659371.1| - 2.1e-144 481.3 0.0 2.4e-144 481.1 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Asn_synthase PF00733.16 gi|110669560|ref|YP_659371.1| - 3.1e-05 23.6 0.2 7.1e-05 22.4 0.0 1.6 2 0 0 2 2 2 1 Asparagine synthase QueC PF06508.8 gi|110669560|ref|YP_659371.1| - 5.1e-05 22.6 0.0 9.8e-05 21.7 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|110669560|ref|YP_659371.1| - 0.001 17.6 0.0 0.0016 17.0 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|110669560|ref|YP_659371.1| - 0.0072 15.2 0.0 0.0095 14.8 0.0 1.2 1 0 0 1 1 1 1 NAD synthase Acyl-CoA_dh_2 PF08028.6 gi|110669560|ref|YP_659371.1| - 0.62 10.3 4.8 1.2 9.4 0.0 3.0 3 1 0 3 3 3 0 Acyl-CoA dehydrogenase, C-terminal domain Lyase_1 PF00206.15 gi|110669561|ref|YP_659372.1| - 5.5e-55 186.7 0.0 9.8e-55 185.9 0.0 1.4 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|110669561|ref|YP_659372.1| - 4.1e-09 36.3 0.1 1.4e-08 34.6 0.1 2.0 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal RimK PF08443.6 gi|110669563|ref|YP_659374.1| - 1e-36 126.1 0.0 2.9e-36 124.7 0.0 1.6 2 0 0 2 2 2 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|110669563|ref|YP_659374.1| - 2.3e-17 63.3 0.0 3.8e-17 62.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|110669563|ref|YP_659374.1| - 1.5e-09 37.0 0.0 2.4e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon GSH-S_ATP PF02955.11 gi|110669563|ref|YP_659374.1| - 2.2e-09 36.6 0.0 5.7e-09 35.3 0.0 1.7 2 0 0 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|110669563|ref|YP_659374.1| - 1.8e-08 34.4 0.0 2.6e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|110669563|ref|YP_659374.1| - 3.9e-06 26.3 0.0 8.6e-06 25.1 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.17 gi|110669563|ref|YP_659374.1| - 0.00058 19.2 0.0 0.002 17.4 0.0 1.9 2 1 0 2 2 2 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|110669563|ref|YP_659374.1| - 0.0033 16.6 0.0 0.052 12.7 0.0 2.2 1 1 1 2 2 2 1 ATP-grasp domain ThiF PF00899.16 gi|110669563|ref|YP_659374.1| - 0.054 13.3 1.1 0.68 9.7 0.0 2.3 2 0 0 2 2 2 0 ThiF family Semialdhyde_dh PF01118.19 gi|110669564|ref|YP_659375.1| - 1e-27 96.8 0.0 1.8e-27 96.0 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|110669564|ref|YP_659375.1| - 3.7e-07 30.1 0.0 1.4e-06 28.2 0.0 2.0 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|110669564|ref|YP_659375.1| - 0.0031 17.4 0.0 0.013 15.4 0.0 1.9 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Epimerase PF01370.16 gi|110669564|ref|YP_659375.1| - 0.0073 15.7 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|110669564|ref|YP_659375.1| - 0.012 15.5 0.0 0.041 13.8 0.0 1.9 2 0 0 2 2 2 0 NADH(P)-binding Endotoxin_C PF03944.9 gi|110669564|ref|YP_659375.1| - 0.13 12.3 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 delta endotoxin AA_kinase PF00696.23 gi|110669565|ref|YP_659376.1| - 1.8e-29 102.9 2.8 2.2e-29 102.7 2.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family Aminotran_3 PF00202.16 gi|110669566|ref|YP_659377.1| - 2.8e-98 328.8 0.3 3.3e-98 328.6 0.2 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Cys_Met_Meta_PP PF01053.15 gi|110669566|ref|YP_659377.1| - 0.00032 19.1 0.0 0.0034 15.7 0.0 2.0 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Peptidase_M20 PF01546.23 gi|110669567|ref|YP_659378.1| - 1.3e-24 86.7 0.0 2e-24 86.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|110669567|ref|YP_659378.1| - 0.00024 20.7 0.0 0.00056 19.6 0.0 1.7 1 0 0 1 1 1 1 Peptidase dimerisation domain OTCace_N PF02729.16 gi|110669568|ref|YP_659379.1| - 2.5e-48 163.3 0.0 4.6e-48 162.4 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|110669568|ref|YP_659379.1| - 4.6e-44 150.0 0.0 9e-44 149.1 0.0 1.5 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Helicase_C_2 PF13307.1 gi|110669569|ref|YP_659380.1| - 2.9e-32 111.9 0.0 8.8e-32 110.3 0.0 1.8 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|110669569|ref|YP_659380.1| - 5e-23 81.3 0.0 9.1e-23 80.5 0.0 1.4 1 0 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|110669569|ref|YP_659380.1| - 3.7e-08 33.0 0.6 7.8e-06 25.4 0.0 3.1 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|110669569|ref|YP_659380.1| - 9.2e-06 25.6 0.8 0.00046 20.0 0.5 2.8 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit Zot PF05707.7 gi|110669569|ref|YP_659380.1| - 0.00065 19.2 0.1 0.057 12.8 0.0 2.4 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_19 PF13245.1 gi|110669569|ref|YP_659380.1| - 0.00077 19.1 0.2 0.0019 17.9 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain PhoH PF02562.11 gi|110669569|ref|YP_659380.1| - 0.0026 17.0 0.1 0.017 14.3 0.0 2.0 2 0 0 2 2 2 1 PhoH-like protein KaiC PF06745.8 gi|110669569|ref|YP_659380.1| - 0.0033 16.5 0.0 0.006 15.7 0.0 1.4 1 0 0 1 1 1 1 KaiC AAA PF00004.24 gi|110669569|ref|YP_659380.1| - 0.011 15.8 1.1 0.41 10.8 0.1 2.9 2 2 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|110669569|ref|YP_659380.1| - 0.014 14.9 0.1 0.033 13.7 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|110669569|ref|YP_659380.1| - 0.015 15.3 1.2 0.66 9.9 0.8 3.1 1 1 0 1 1 1 0 AAA ATPase domain DUF2075 PF09848.4 gi|110669569|ref|YP_659380.1| - 0.018 14.0 0.0 0.91 8.4 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_34 PF13872.1 gi|110669569|ref|YP_659380.1| - 0.023 13.4 0.0 0.04 12.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 TPR_MLP1_2 PF07926.7 gi|110669569|ref|YP_659380.1| - 0.031 14.0 0.3 0.088 12.5 0.2 1.8 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein AAA_11 PF13086.1 gi|110669569|ref|YP_659380.1| - 0.041 13.4 0.1 0.091 12.3 0.1 1.6 1 0 0 1 1 1 0 AAA domain HAUS-augmin3 PF14932.1 gi|110669569|ref|YP_659380.1| - 0.051 12.7 2.6 1.9 7.6 0.0 3.1 3 0 0 3 3 3 0 HAUS augmin-like complex subunit 3 Myosin_tail_1 PF01576.14 gi|110669569|ref|YP_659380.1| - 0.054 11.2 0.8 0.086 10.5 0.6 1.2 1 0 0 1 1 1 0 Myosin tail AAA_22 PF13401.1 gi|110669569|ref|YP_659380.1| - 0.055 13.6 2.2 5.4 7.1 0.1 3.3 1 1 2 3 3 3 0 AAA domain Gluconate_2-dh3 PF13618.1 gi|110669569|ref|YP_659380.1| - 0.53 10.4 5.1 16 5.6 0.0 3.4 3 0 0 3 3 3 0 Gluconate 2-dehydrogenase subunit 3 RsbRD_N PF14361.1 gi|110669569|ref|YP_659380.1| - 2.5 8.5 6.1 6.9 7.1 0.7 3.5 2 1 0 3 3 3 0 RsbT co-antagonist protein rsbRD N-terminal domain p450 PF00067.17 gi|110669570|ref|YP_659381.1| - 6.6e-90 301.8 0.0 8e-90 301.5 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 2_5_RNA_ligase2 PF13563.1 gi|110669571|ref|YP_659382.1| - 2.3e-13 50.1 0.0 2.6e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.11 gi|110669571|ref|YP_659382.1| - 4.1e-05 23.4 0.0 0.00098 19.0 0.0 2.5 3 0 0 3 3 3 1 LigT like Phosphoesterase AKAP7_NLS PF10469.4 gi|110669571|ref|YP_659382.1| - 4.9e-05 23.1 0.0 0.00012 21.8 0.0 1.6 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain Usp PF00582.21 gi|110669572|ref|YP_659383.1| - 3.1e-30 105.2 0.5 4e-30 104.8 0.3 1.1 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.11 gi|110669572|ref|YP_659383.1| - 0.046 14.2 0.1 0.064 13.7 0.0 1.4 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase TauE PF01925.14 gi|110669573|ref|YP_659384.1| - 4.2e-32 111.5 18.8 4.2e-32 111.5 13.0 1.6 1 1 0 1 1 1 1 Sulfite exporter TauE/SafE IncA PF04156.9 gi|110669573|ref|YP_659384.1| - 0.34 10.4 0.0 0.34 10.4 0.0 2.9 4 0 0 4 4 4 0 IncA protein UvrB PF12344.3 gi|110669574|ref|YP_659385.1| - 4.5e-22 77.2 3.6 7.1e-22 76.6 1.2 2.2 2 0 0 2 2 2 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|110669574|ref|YP_659385.1| - 1.9e-14 53.2 0.0 4.7e-14 52.0 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain UVR PF02151.14 gi|110669574|ref|YP_659385.1| - 8.3e-10 37.8 4.1 3.2e-09 36.0 2.8 2.1 1 0 0 1 1 1 1 UvrB/uvrC motif ResIII PF04851.10 gi|110669574|ref|YP_659385.1| - 1.5e-08 34.6 0.1 1e-07 31.9 0.0 2.3 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|110669574|ref|YP_659385.1| - 9.3e-05 21.9 0.1 0.003 17.0 0.0 2.9 2 1 0 3 3 3 1 DEAD/DEAH box helicase UB2H PF14814.1 gi|110669574|ref|YP_659385.1| - 0.0057 16.3 0.0 0.02 14.5 0.0 2.0 1 1 0 1 1 1 1 Bifunctional transglycosylase second domain AAA_19 PF13245.1 gi|110669574|ref|YP_659385.1| - 0.0067 16.1 0.1 6.6 6.5 0.0 3.2 4 0 0 4 4 4 2 Part of AAA domain DUF87 PF01935.12 gi|110669574|ref|YP_659385.1| - 0.036 13.8 3.5 0.067 12.9 0.1 2.8 3 0 0 3 3 3 0 Domain of unknown function DUF87 AAA PF00004.24 gi|110669574|ref|YP_659385.1| - 0.038 14.2 0.5 2.2 8.4 0.0 3.5 4 0 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) Cpl-7 PF08230.6 gi|110669574|ref|YP_659385.1| - 0.086 12.5 0.1 18 5.1 0.0 2.7 2 0 0 2 2 2 0 Cpl-7 lysozyme C-terminal domain NACHT PF05729.7 gi|110669574|ref|YP_659385.1| - 0.11 12.1 0.2 4.4 6.9 0.0 2.4 2 0 0 2 2 2 0 NACHT domain Med9 PF07544.8 gi|110669575|ref|YP_659386.1| - 0.0016 18.1 0.9 0.068 12.9 0.1 2.2 1 1 1 2 2 2 1 RNA polymerase II transcription mediator complex subunit 9 Latarcin PF10279.4 gi|110669575|ref|YP_659386.1| - 0.0038 17.3 0.3 0.0077 16.4 0.2 1.5 1 1 0 1 1 1 1 Latarcin precursor DUF619 PF04768.8 gi|110669575|ref|YP_659386.1| - 0.0052 16.2 0.2 0.0059 16.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF619) Nucleo_P87 PF07267.6 gi|110669575|ref|YP_659386.1| - 0.0059 15.3 0.4 0.0067 15.1 0.3 1.1 1 0 0 1 1 1 1 Nucleopolyhedrovirus capsid protein P87 HrpJ PF07201.6 gi|110669575|ref|YP_659386.1| - 0.014 15.4 4.9 0.021 14.8 3.4 1.4 1 1 0 1 1 1 0 HrpJ-like domain DUF3509 PF12021.3 gi|110669575|ref|YP_659386.1| - 0.025 14.3 0.8 0.038 13.7 0.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3509) HEPN PF05168.9 gi|110669575|ref|YP_659386.1| - 0.035 13.9 0.5 0.056 13.3 0.3 1.4 1 1 0 1 1 1 0 HEPN domain CCDC155 PF14662.1 gi|110669575|ref|YP_659386.1| - 0.037 13.6 5.9 0.042 13.4 4.1 1.1 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 KorB PF08535.5 gi|110669575|ref|YP_659386.1| - 0.048 13.8 0.4 0.1 12.7 0.2 1.6 1 1 0 1 1 1 0 KorB domain TPR_MLP1_2 PF07926.7 gi|110669575|ref|YP_659386.1| - 0.052 13.3 7.2 0.079 12.7 5.0 1.3 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF4398 PF14346.1 gi|110669575|ref|YP_659386.1| - 0.11 12.5 5.8 2.7 8.1 0.4 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4398) SCO1-SenC PF02630.9 gi|110669575|ref|YP_659386.1| - 0.12 12.0 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 SCO1/SenC Tropomyosin PF00261.15 gi|110669575|ref|YP_659386.1| - 0.14 11.1 6.8 0.23 10.5 4.7 1.3 1 1 0 1 1 1 0 Tropomyosin DUF2205 PF10224.4 gi|110669575|ref|YP_659386.1| - 0.15 11.6 1.7 0.23 11.0 0.7 1.7 1 1 1 2 2 2 0 Predicted coiled-coil protein (DUF2205) AAA_32 PF13654.1 gi|110669575|ref|YP_659386.1| - 0.2 10.2 2.5 0.21 10.1 1.8 1.0 1 0 0 1 1 1 0 AAA domain Phage_GP20 PF06810.6 gi|110669575|ref|YP_659386.1| - 0.28 10.6 4.6 0.42 10.0 3.2 1.4 1 1 0 1 1 1 0 Phage minor structural protein GP20 ATP-synt_B PF00430.13 gi|110669575|ref|YP_659386.1| - 0.45 10.3 8.0 7.3 6.4 0.0 2.0 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) FUSC PF04632.7 gi|110669575|ref|YP_659386.1| - 1.1 7.6 3.5 1.3 7.4 2.4 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF4404 PF14357.1 gi|110669575|ref|YP_659386.1| - 1.6 9.2 7.6 7.1 7.1 1.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) DUF95 PF01944.12 gi|110669577|ref|YP_659388.1| - 2.3e-25 89.1 17.9 2.3e-25 89.1 12.4 3.6 2 1 1 3 3 3 1 Integral membrane protein DUF95 Rhodanese PF00581.15 gi|110669578|ref|YP_659389.1| - 7.6e-36 122.8 0.9 1.4e-19 70.4 0.0 2.5 3 0 0 3 3 3 2 Rhodanese-like domain Rhodanese PF00581.15 gi|110669579|ref|YP_659390.1| - 3.8e-36 123.8 0.0 2e-18 66.8 0.0 2.4 2 1 1 3 3 3 2 Rhodanese-like domain DUF2080 PF09853.4 gi|110669580|ref|YP_659391.1| - 0.1 12.3 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Putative transposon-encoded protein (DUF2080) Methyltransf_11 PF08241.7 gi|110669581|ref|YP_659392.1| - 3.8e-23 81.7 0.0 5.9e-23 81.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|110669581|ref|YP_659392.1| - 3.8e-17 62.2 0.0 4.6e-17 62.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|110669581|ref|YP_659392.1| - 1.2e-12 47.8 0.0 1.6e-12 47.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|110669581|ref|YP_659392.1| - 9.2e-12 45.2 0.0 1.5e-11 44.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|110669581|ref|YP_659392.1| - 4.3e-10 40.1 0.0 6.9e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|110669581|ref|YP_659392.1| - 2.6e-09 36.5 0.0 5.1e-09 35.5 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|110669581|ref|YP_659392.1| - 2.9e-09 37.2 0.0 4.5e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|110669581|ref|YP_659392.1| - 5.3e-06 25.3 0.0 8.2e-06 24.7 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_26 PF13659.1 gi|110669581|ref|YP_659392.1| - 1.8e-05 24.7 0.0 4.5e-05 23.4 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|110669581|ref|YP_659392.1| - 6.5e-05 22.3 0.0 9.3e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.14 gi|110669581|ref|YP_659392.1| - 0.0022 17.5 0.0 0.0032 17.0 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_2 PF00891.13 gi|110669581|ref|YP_659392.1| - 0.0024 17.0 0.0 0.003 16.7 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase CMAS PF02353.15 gi|110669581|ref|YP_659392.1| - 0.005 15.9 0.0 0.0062 15.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_29 PF03141.11 gi|110669581|ref|YP_659392.1| - 0.029 12.7 0.0 0.036 12.4 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase RrnaAD PF00398.15 gi|110669581|ref|YP_659392.1| - 0.042 12.8 0.0 0.05 12.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_8 PF05148.10 gi|110669581|ref|YP_659392.1| - 0.05 13.2 0.0 0.11 12.1 0.0 1.5 2 0 0 2 2 2 0 Hypothetical methyltransferase MTS PF05175.9 gi|110669581|ref|YP_659392.1| - 0.053 12.8 0.0 0.099 12.0 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_32 PF13679.1 gi|110669581|ref|YP_659392.1| - 0.099 12.3 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF2934 PF11154.3 gi|110669581|ref|YP_659392.1| - 0.26 10.6 3.1 0.2 11.0 0.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2934) KaiC PF06745.8 gi|110669582|ref|YP_659393.1| - 0.0032 16.6 0.1 0.0041 16.2 0.0 1.1 1 0 0 1 1 1 1 KaiC DUF2072 PF09845.4 gi|110669584|ref|YP_659395.1| - 1e-28 99.8 4.8 2.8e-14 53.1 0.2 2.5 2 1 0 2 2 2 2 Zn-ribbon containing protein (DUF2072) zinc_ribbon_2 PF13240.1 gi|110669584|ref|YP_659395.1| - 0.085 12.3 4.2 0.2 11.2 2.9 1.7 1 0 0 1 1 1 0 zinc-ribbon domain DUF1451 PF07295.6 gi|110669584|ref|YP_659395.1| - 0.12 12.1 0.5 0.27 10.9 0.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) zf-C2H2_6 PF13912.1 gi|110669584|ref|YP_659395.1| - 0.14 12.0 0.1 0.14 12.0 0.0 2.0 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2HC5 PF06221.8 gi|110669584|ref|YP_659395.1| - 0.18 11.6 0.5 0.34 10.7 0.4 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type Zn-ribbon_8 PF09723.5 gi|110669584|ref|YP_659395.1| - 0.2 11.6 1.2 0.52 10.2 0.8 1.7 1 0 0 1 1 1 0 Zinc ribbon domain DUF1272 PF06906.6 gi|110669584|ref|YP_659395.1| - 0.32 10.8 1.6 0.63 9.9 1.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) TF_Zn_Ribbon PF08271.7 gi|110669584|ref|YP_659395.1| - 0.7 9.2 2.8 16 4.8 0.1 2.7 2 0 0 2 2 2 0 TFIIB zinc-binding zf-C2H2 PF00096.21 gi|110669584|ref|YP_659395.1| - 1 9.8 3.9 2.9 8.4 0.2 2.6 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-ribbon_3 PF13248.1 gi|110669584|ref|YP_659395.1| - 3.6 6.9 5.6 42 3.5 3.9 2.3 1 1 0 1 1 1 0 zinc-ribbon domain DUF2073 PF09846.4 gi|110669585|ref|YP_659396.1| - 3.1e-46 155.3 0.3 4e-46 154.9 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.18 gi|110669586|ref|YP_659397.1| - 5.4e-15 55.3 0.0 7.9e-15 54.8 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|110669586|ref|YP_659397.1| - 8.3e-11 41.6 0.1 5.8e-05 22.6 0.0 2.6 2 2 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|110669586|ref|YP_659397.1| - 6.1e-07 28.8 0.0 0.00038 19.7 0.0 2.5 2 1 1 3 3 3 2 ADP-ribosylation factor family AAA_17 PF13207.1 gi|110669586|ref|YP_659397.1| - 6.6e-06 26.9 0.1 1.2e-05 26.0 0.1 1.4 1 1 0 1 1 1 1 AAA domain SRPRB PF09439.5 gi|110669586|ref|YP_659397.1| - 1.5e-05 24.2 0.0 0.058 12.6 0.0 2.3 2 0 0 2 2 2 2 Signal recognition particle receptor beta subunit AAA_18 PF13238.1 gi|110669586|ref|YP_659397.1| - 2.7e-05 24.4 0.0 3.9e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain FeoB_N PF02421.13 gi|110669586|ref|YP_659397.1| - 4.7e-05 22.7 0.5 0.00068 18.9 0.4 2.5 1 1 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|110669586|ref|YP_659397.1| - 9.9e-05 22.8 0.0 0.00041 20.8 0.0 1.9 1 1 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|110669586|ref|YP_659397.1| - 0.00052 19.8 0.0 0.085 12.6 0.2 2.7 1 1 1 2 2 2 1 Dynamin family NB-ARC PF00931.17 gi|110669586|ref|YP_659397.1| - 0.00053 18.9 0.0 0.0018 17.2 0.0 1.7 2 0 0 2 2 2 1 NB-ARC domain Septin PF00735.13 gi|110669586|ref|YP_659397.1| - 0.00066 18.7 0.0 0.001 18.1 0.0 1.5 1 1 0 1 1 1 1 Septin AAA_22 PF13401.1 gi|110669586|ref|YP_659397.1| - 0.0038 17.3 0.0 0.0065 16.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|110669586|ref|YP_659397.1| - 0.0044 16.7 0.2 0.028 14.1 0.0 2.1 2 0 0 2 2 2 1 Part of AAA domain AAA PF00004.24 gi|110669586|ref|YP_659397.1| - 0.0065 16.6 0.0 0.02 15.0 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|110669586|ref|YP_659397.1| - 0.0071 16.3 0.1 0.085 12.8 0.0 2.1 1 1 1 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|110669586|ref|YP_659397.1| - 0.0074 16.4 0.0 0.017 15.2 0.0 1.7 2 0 0 2 2 1 1 RNA helicase cobW PF02492.14 gi|110669586|ref|YP_659397.1| - 0.0082 15.5 0.0 3.7 6.9 0.0 2.3 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.1 gi|110669586|ref|YP_659397.1| - 0.013 15.4 0.0 0.029 14.3 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain ArgK PF03308.11 gi|110669586|ref|YP_659397.1| - 0.024 13.3 0.1 0.23 10.1 0.0 2.3 2 1 0 2 2 2 0 ArgK protein ABC_tran PF00005.22 gi|110669586|ref|YP_659397.1| - 0.024 14.9 0.0 0.035 14.4 0.0 1.4 1 0 0 1 1 1 0 ABC transporter ATP-synt_ab PF00006.20 gi|110669586|ref|YP_659397.1| - 0.029 13.8 0.0 0.059 12.8 0.0 1.5 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Zeta_toxin PF06414.7 gi|110669586|ref|YP_659397.1| - 0.031 13.3 0.0 0.082 12.0 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin AAA_14 PF13173.1 gi|110669586|ref|YP_659397.1| - 0.034 14.0 0.0 0.062 13.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|110669586|ref|YP_659397.1| - 0.048 13.3 0.0 0.082 12.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Arch_ATPase PF01637.13 gi|110669586|ref|YP_659397.1| - 0.067 12.8 0.0 0.092 12.4 0.0 1.5 1 1 0 1 1 1 0 Archaeal ATPase MMR_HSR1_C PF08438.5 gi|110669586|ref|YP_659397.1| - 0.071 13.3 0.1 0.18 12.0 0.0 1.6 2 0 0 2 2 1 0 GTPase of unknown function C-terminal MobB PF03205.9 gi|110669586|ref|YP_659397.1| - 0.081 12.6 0.0 0.27 10.9 0.0 1.9 1 1 1 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B RuvB_N PF05496.7 gi|110669586|ref|YP_659397.1| - 0.084 11.9 0.0 0.15 11.0 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus FMN_bind PF04205.9 gi|110669586|ref|YP_659397.1| - 0.086 13.0 0.1 0.17 12.0 0.1 1.5 1 0 0 1 1 1 0 FMN-binding domain AAA_25 PF13481.1 gi|110669586|ref|YP_659397.1| - 0.089 12.1 0.0 0.17 11.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain Phage_integrase PF00589.17 gi|109644368|ref|YP_659398.1| - 1e-23 83.8 1.7 1.6e-23 83.2 1.2 1.3 1 1 0 1 1 1 1 Phage integrase family HTH_8 PF02954.14 gi|109644368|ref|YP_659398.1| - 0.021 14.3 0.1 5.1 6.7 0.0 3.3 3 0 0 3 3 3 0 Bacterial regulatory protein, Fis family DUF3435 PF11917.3 gi|109644368|ref|YP_659398.1| - 0.03 13.0 0.6 0.04 12.6 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) RST PF12174.3 gi|109644368|ref|YP_659398.1| - 0.07 12.9 0.2 0.2 11.4 0.0 1.8 2 0 0 2 2 2 0 RCD1-SRO-TAF4 (RST) plant domain DUF4636 PF15468.1 gi|109644370|ref|YP_659400.1| - 0.081 12.3 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4636) Yip1 PF04893.12 gi|109644371|ref|YP_659401.1| - 3.3 7.1 24.4 3 7.3 12.3 2.9 1 1 1 2 2 2 0 Yip1 domain bPH_2 PF03703.9 gi|109644372|ref|YP_659402.1| - 0.0018 18.2 0.0 0.0029 17.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial PH domain DUF912 PF06024.7 gi|109644372|ref|YP_659402.1| - 1.4 9.0 4.2 9.2 6.3 0.6 2.1 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) A2M_N PF01835.14 gi|109644373|ref|YP_659403.1| - 0.00037 20.6 0.2 0.0016 18.6 0.0 2.1 3 0 0 3 3 3 1 MG2 domain Herpes_UL16 PF03044.9 gi|109644373|ref|YP_659403.1| - 0.012 14.6 0.1 0.022 13.7 0.1 1.3 1 0 0 1 1 1 0 Herpesvirus UL16/UL94 family RHH_1 PF01402.16 gi|109644376|ref|YP_659406.1| - 0.0047 16.7 0.0 0.0076 16.0 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Arc PF03869.9 gi|109644376|ref|YP_659406.1| - 0.043 13.4 0.0 0.076 12.6 0.0 1.5 1 0 0 1 1 1 0 Arc-like DNA binding domain Antistasin PF02822.9 gi|109644377|ref|YP_659407.1| - 1.6 9.1 14.8 0.68 10.2 4.7 2.6 2 0 0 2 2 2 0 Antistasin family DUF3377 PF11857.3 gi|109644378|ref|YP_659408.1| - 4 7.1 5.4 6.4 6.4 0.8 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF3377) Methyltransf_26 PF13659.1 gi|109644379|ref|YP_659409.1| - 4.8e-10 39.5 0.0 1.4e-09 37.9 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|109644379|ref|YP_659409.1| - 3.3e-06 26.4 0.2 0.13 11.2 0.0 3.5 3 0 0 3 3 3 2 N-6 DNA Methylase Eco57I PF07669.6 gi|109644379|ref|YP_659409.1| - 9.1e-06 25.9 0.1 0.078 13.3 0.0 2.9 2 0 0 2 2 2 2 Eco57I restriction-modification methylase UPF0020 PF01170.13 gi|109644379|ref|YP_659409.1| - 0.14 11.6 0.0 1.2 8.6 0.0 2.3 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 PLDc_2 PF13091.1 gi|109644380|ref|YP_659410.1| - 7.5e-23 80.6 0.2 1.3e-21 76.6 0.0 3.1 2 0 0 2 2 2 1 PLD-like domain Helicase_C PF00271.26 gi|109644380|ref|YP_659410.1| - 7.3e-15 54.6 0.3 2.7e-14 52.7 0.1 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain SNF2_N PF00176.18 gi|109644380|ref|YP_659410.1| - 1.5e-13 50.1 0.0 1.3e-12 47.1 0.0 2.1 1 1 0 1 1 1 1 SNF2 family N-terminal domain ResIII PF04851.10 gi|109644380|ref|YP_659410.1| - 6.8e-10 39.0 1.4 4e-09 36.5 0.0 3.1 3 1 0 3 3 3 1 Type III restriction enzyme, res subunit DUF2075 PF09848.4 gi|109644380|ref|YP_659410.1| - 0.00056 18.9 0.1 0.0025 16.8 0.0 2.1 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|109644380|ref|YP_659410.1| - 0.012 15.7 0.0 0.052 13.6 0.0 2.2 1 0 0 1 1 1 0 AAA domain Lumazine_bd PF12870.2 gi|109644382|ref|YP_659412.1| - 0.051 13.6 0.3 0.06 13.4 0.2 1.1 1 0 0 1 1 1 0 Lumazine-binding domain OmpH PF03938.9 gi|109644382|ref|YP_659412.1| - 0.051 13.5 1.5 0.057 13.3 1.1 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Surfac_D-trimer PF09006.6 gi|109644382|ref|YP_659412.1| - 0.33 10.7 2.1 4.5 7.0 1.4 2.2 1 1 0 1 1 1 0 Lung surfactant protein D coiled-coil trimerisation FlxA PF14282.1 gi|109644382|ref|YP_659412.1| - 0.37 10.7 3.1 0.61 10.0 2.1 1.6 1 1 0 1 1 1 0 FlxA-like protein DUF536 PF04394.9 gi|109644382|ref|YP_659412.1| - 3.5 7.4 9.1 0.35 10.6 3.2 1.6 2 0 0 2 2 2 0 Protein of unknown function, DUF536 CheZ PF04344.8 gi|109644383|ref|YP_659413.1| - 0.041 13.5 0.0 0.053 13.1 0.0 1.1 1 0 0 1 1 1 0 Chemotaxis phosphatase, CheZ LytR_C PF13399.1 gi|109644383|ref|YP_659413.1| - 0.05 13.9 1.1 1 9.7 0.1 2.2 1 1 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator zf-His_Me_endon PF05551.6 gi|109644383|ref|YP_659413.1| - 0.11 12.4 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 Zinc-binding loop region of homing endonuclease RNase_H PF00075.19 gi|109644384|ref|YP_659414.1| - 5.1e-11 43.0 0.2 5.8e-11 42.8 0.2 1.1 1 0 0 1 1 1 1 RNase H RVT_3 PF13456.1 gi|109644384|ref|YP_659414.1| - 5.7e-10 38.8 0.1 9.4e-10 38.1 0.1 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like PLC-beta_C PF08703.5 gi|109644384|ref|YP_659414.1| - 0.019 14.6 0.1 0.029 14.0 0.0 1.2 1 0 0 1 1 1 0 PLC-beta C terminal HNH PF01844.18 gi|109644385|ref|YP_659415.1| - 2.5e-07 30.4 2.6 4.3e-07 29.6 1.8 1.4 1 0 0 1 1 1 1 HNH endonuclease ADH_N PF08240.7 gi|109644385|ref|YP_659415.1| - 0.05 13.3 0.2 0.12 12.1 0.0 1.6 2 0 0 2 2 2 0 Alcohol dehydrogenase GroES-like domain Endonuclease_7 PF02945.10 gi|109644385|ref|YP_659415.1| - 0.2 11.4 5.6 0.38 10.4 0.2 2.2 1 1 1 2 2 2 0 Recombination endonuclease VII zf-C2H2_6 PF13912.1 gi|109644385|ref|YP_659415.1| - 0.24 11.3 0.4 0.24 11.3 0.3 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Cytochrome_C7 PF14522.1 gi|109644385|ref|YP_659415.1| - 0.58 9.8 7.4 1.5 8.4 5.1 1.7 1 1 0 1 1 1 0 Cytochrome c7 Cytochrom_NNT PF03264.9 gi|109644385|ref|YP_659415.1| - 3 7.2 9.4 0.45 9.9 1.4 2.1 1 1 1 2 2 2 0 NapC/NirT cytochrome c family, N-terminal region D5_N PF08706.6 gi|109644386|ref|YP_659416.1| - 4.1e-10 39.9 0.0 1e-08 35.3 0.0 2.5 1 1 1 2 2 2 2 D5 N terminal like CbiA PF01656.18 gi|109644390|ref|YP_659420.1| - 5.6e-21 74.8 0.0 7.3e-21 74.4 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|109644390|ref|YP_659420.1| - 1e-10 41.1 0.1 1.8e-06 27.2 0.0 2.2 1 1 1 2 2 2 2 ATPase MipZ AAA_31 PF13614.1 gi|109644390|ref|YP_659420.1| - 6.7e-09 35.8 0.0 6.4e-08 32.6 0.0 2.5 2 1 0 2 2 2 1 AAA domain YhjQ PF06564.7 gi|109644390|ref|YP_659420.1| - 4.1e-06 26.3 0.4 0.00048 19.5 0.1 2.2 2 0 0 2 2 2 2 YhjQ protein ArsA_ATPase PF02374.10 gi|109644390|ref|YP_659420.1| - 0.00051 19.1 0.8 0.00091 18.3 0.5 1.6 1 1 0 1 1 1 1 Anion-transporting ATPase AAA_19 PF13245.1 gi|109644390|ref|YP_659420.1| - 0.041 13.6 0.0 0.12 12.1 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain Hydrolase_4 PF12146.3 gi|109644390|ref|YP_659420.1| - 0.063 13.1 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Putative lysophospholipase DUF853 PF05872.7 gi|109644390|ref|YP_659420.1| - 0.088 11.1 0.2 0.13 10.6 0.1 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) SRP54 PF00448.17 gi|109644390|ref|YP_659420.1| - 0.29 10.5 2.4 0.61 9.4 0.1 2.5 3 1 0 3 3 3 0 SRP54-type protein, GTPase domain T2SF PF00482.18 gi|109644391|ref|YP_659421.1| - 0.011 15.6 0.2 0.015 15.1 0.1 1.4 1 1 0 1 1 1 0 Type II secretion system (T2SS), protein F Nterm_IS4 PF13006.2 gi|109644391|ref|YP_659421.1| - 0.011 15.7 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 Insertion element 4 transposase N-terminal Pex19 PF04614.7 gi|109644391|ref|YP_659421.1| - 0.029 14.0 1.2 0.037 13.6 0.9 1.2 1 0 0 1 1 1 0 Pex19 protein family Phage_int_SAM_1 PF02899.12 gi|109644391|ref|YP_659421.1| - 0.08 13.1 0.0 0.18 11.9 0.0 1.7 1 1 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain DUF935 PF06074.7 gi|109644391|ref|YP_659421.1| - 0.099 11.3 1.5 0.13 10.9 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF935) RHH_1 PF01402.16 gi|109644391|ref|YP_659421.1| - 1 9.3 0.1 1 9.3 0.0 3.5 5 0 0 5 5 5 0 Ribbon-helix-helix protein, copG family DUF4404 PF14357.1 gi|109644391|ref|YP_659421.1| - 1.9 8.9 4.6 4.1 7.8 1.5 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) AAA_assoc PF14363.1 gi|109644394|ref|YP_659424.1| - 0.088 12.8 0.0 0.15 12.0 0.0 1.5 1 1 0 1 1 1 0 Domain associated at C-terminal with AAA TAT_signal PF10518.4 gi|109644394|ref|YP_659424.1| - 0.12 12.3 2.7 0.25 11.4 1.9 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Mrr_cat PF04471.7 gi|109644396|ref|YP_659426.1| - 2.9e-24 85.1 0.1 5.3e-24 84.2 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease WYL PF13280.1 gi|109644396|ref|YP_659426.1| - 3.7e-21 75.7 2.2 6.9e-20 71.6 0.2 2.5 2 1 0 2 2 2 1 WYL domain Mrr_cat_2 PF13156.1 gi|109644396|ref|YP_659426.1| - 0.0076 16.1 0.2 0.019 14.8 0.1 1.7 2 0 0 2 2 2 1 Restriction endonuclease Mrr_cat PF04471.7 gi|109644397|ref|YP_659427.1| - 1.3e-24 86.2 0.0 1.8e-24 85.7 0.0 1.2 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat_2 PF13156.1 gi|109644397|ref|YP_659427.1| - 2.9e-06 27.1 0.3 4.8e-06 26.4 0.2 1.3 1 0 0 1 1 1 1 Restriction endonuclease DUF4352 PF11611.3 gi|109644398|ref|YP_659428.1| - 5.5e-10 39.4 0.1 1.5e-08 34.8 0.2 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4352) CARDB PF07705.6 gi|109644398|ref|YP_659428.1| - 0.016 15.2 0.0 0.095 12.7 0.0 2.2 2 1 0 2 2 2 0 CARDB DUF1883 PF08980.5 gi|109644398|ref|YP_659428.1| - 0.057 12.9 0.1 15 5.1 0.0 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF1883) DUF4131 PF13567.1 gi|109644399|ref|YP_659429.1| - 0.11 11.9 0.1 0.11 11.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) PIRT PF15099.1 gi|109644399|ref|YP_659429.1| - 6.5 5.9 5.5 10 5.3 3.8 1.3 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family DUF4352 PF11611.3 gi|109644400|ref|YP_659430.1| - 6.3e-06 26.3 0.0 0.055 13.6 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4352) Resolvase PF00239.16 gi|109644401|ref|YP_659431.1| - 5e-34 117.1 2.4 5e-34 117.1 1.7 1.7 2 0 0 2 2 2 1 Resolvase, N terminal domain HTH_28 PF13518.1 gi|109644401|ref|YP_659431.1| - 0.0011 18.9 0.1 0.0027 17.6 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|109644401|ref|YP_659431.1| - 0.012 15.1 0.1 0.04 13.5 0.1 1.9 1 0 0 1 1 1 0 Homeodomain-like domain HTH_24 PF13412.1 gi|109644401|ref|YP_659431.1| - 0.031 13.6 0.2 0.061 12.7 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.17 gi|109644401|ref|YP_659431.1| - 0.082 12.7 0.1 0.19 11.5 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix GntR PF00392.16 gi|109644401|ref|YP_659431.1| - 0.12 11.8 0.5 0.48 9.8 0.2 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Mg_chelatase_2 PF13335.1 gi|109644401|ref|YP_659431.1| - 0.2 12.0 6.1 0.21 11.9 0.3 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI CAP PF00188.21 gi|109644402|ref|YP_659432.1| - 5.8e-15 55.8 0.4 8.4e-15 55.3 0.3 1.2 1 0 0 1 1 1 1 Cysteine-rich secretory protein family DUF217 PF02697.9 gi|109644403|ref|YP_659433.1| - 0.00051 20.2 0.1 0.013 15.6 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized ACR, COG1753