#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
HTH_29	PF13551.1	gi|385802306|ref|YP_005838708.1|	-	0.0043	17.1	0.0	0.0054	16.8	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.1	gi|385802306|ref|YP_005838708.1|	-	0.019	14.6	0.0	0.022	14.4	0.0	1.2	1	0	0	1	1	1	0	Homeodomain-like	domain
Ldl_recept_b	PF00058.12	gi|385802307|ref|YP_005838709.1|	-	0.022	15.0	0.0	0.052	13.8	0.0	1.6	1	0	0	1	1	1	0	Low-density	lipoprotein	receptor	repeat	class	B
DUF4178	PF13785.1	gi|385802307|ref|YP_005838709.1|	-	0.079	12.9	0.2	0.11	12.5	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4178)
DUF3244	PF11589.3	gi|385802307|ref|YP_005838709.1|	-	0.18	11.5	1.5	2	8.1	0.1	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3244)
DUF746	PF05344.6	gi|385802308|ref|YP_005838710.1|	-	0.022	14.2	0.0	0.06	12.8	0.0	1.7	2	0	0	2	2	2	0	Domain	of	Unknown	Function	(DUF746)
DUF3657	PF12394.3	gi|385802308|ref|YP_005838710.1|	-	0.025	14.6	0.0	0.055	13.5	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3657)
Mrr_N	PF14338.1	gi|385802308|ref|YP_005838710.1|	-	0.08	13.0	0.1	0.17	11.9	0.1	1.6	2	0	0	2	2	2	0	Mrr	N-terminal	domain
DUF3235	PF11574.3	gi|385802308|ref|YP_005838710.1|	-	0.1	12.8	0.0	0.2	11.8	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3235)
HTH_28	PF13518.1	gi|385802308|ref|YP_005838710.1|	-	0.11	12.5	0.0	1.1	9.3	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
EAP30	PF04157.11	gi|385802308|ref|YP_005838710.1|	-	0.11	11.6	0.2	0.15	11.1	0.1	1.2	1	0	0	1	1	1	0	EAP30/Vps36	family
HTH_29	PF13551.1	gi|385802308|ref|YP_005838710.1|	-	0.11	12.6	0.0	4.9	7.3	0.0	2.4	2	0	0	2	2	2	0	Winged	helix-turn	helix
DUF294_C	PF10335.4	gi|385802311|ref|YP_005838713.1|	-	0.072	12.7	0.0	0.072	12.7	0.0	1.1	1	0	0	1	1	1	0	Putative	nucleotidyltransferase	substrate	binding	domain
PAS_4	PF08448.5	gi|385802313|ref|YP_005838715.1|	-	3.3e-33	113.9	10.0	6.3e-14	51.9	0.1	4.4	4	0	0	4	4	4	4	PAS	fold
PAS_9	PF13426.1	gi|385802313|ref|YP_005838715.1|	-	9.1e-32	109.5	9.0	2.9e-10	40.4	0.2	5.1	5	0	0	5	5	5	4	PAS	domain
PAS_3	PF08447.6	gi|385802313|ref|YP_005838715.1|	-	1.5e-23	82.7	3.2	3.1e-12	46.4	0.0	4.3	4	0	0	4	4	4	3	PAS	fold
HATPase_c	PF02518.21	gi|385802313|ref|YP_005838715.1|	-	1.2e-20	73.2	0.1	3e-20	72.0	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Response_reg	PF00072.19	gi|385802313|ref|YP_005838715.1|	-	6e-19	68.1	0.0	1.7e-18	66.6	0.0	1.8	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS	PF00989.19	gi|385802313|ref|YP_005838715.1|	-	3.9e-18	65.2	3.4	1.3e-06	28.1	0.0	4.9	4	0	0	4	4	4	3	PAS	fold
HisKA	PF00512.20	gi|385802313|ref|YP_005838715.1|	-	1.2e-13	50.8	0.5	1.2e-13	50.8	0.3	3.6	5	0	0	5	5	5	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_8	PF13188.1	gi|385802313|ref|YP_005838715.1|	-	1.5e-10	40.4	0.0	4.3e-06	26.3	0.0	3.6	4	0	0	4	4	4	2	PAS	domain
HATPase_c_3	PF13589.1	gi|385802313|ref|YP_005838715.1|	-	0.0011	18.6	0.5	0.0041	16.7	0.4	2.0	1	1	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
TUG-UBL1	PF11470.3	gi|385802313|ref|YP_005838715.1|	-	0.18	11.7	0.7	8.2	6.4	0.0	3.4	4	0	0	4	4	4	0	GLUT4	regulating	protein	TUG
BIV_Env	PF05858.7	gi|385802314|ref|YP_005838716.1|	-	0.095	10.6	0.5	0.12	10.3	0.3	1.2	1	0	0	1	1	1	0	Bovine	immunodeficiency	virus	surface	protein	(SU)
Synaphin	PF05835.7	gi|385802315|ref|YP_005838717.1|	-	4.8	7.3	10.7	0.62	10.2	4.3	1.7	1	1	0	2	2	2	0	Synaphin	protein
CbiA	PF01656.18	gi|385802316|ref|YP_005838718.1|	-	2e-19	69.7	0.0	2.8e-19	69.2	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|385802316|ref|YP_005838718.1|	-	2e-07	31.0	0.0	9.8e-07	28.8	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
ArsA_ATPase	PF02374.10	gi|385802316|ref|YP_005838718.1|	-	3.4e-07	29.5	0.0	6.2e-07	28.7	0.0	1.3	1	0	0	1	1	1	1	Anion-transporting	ATPase
MipZ	PF09140.6	gi|385802316|ref|YP_005838718.1|	-	0.0017	17.5	0.0	0.03	13.4	0.0	2.2	1	1	0	2	2	2	1	ATPase	MipZ
SRP54	PF00448.17	gi|385802316|ref|YP_005838718.1|	-	0.0091	15.4	0.0	0.02	14.3	0.0	1.5	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
Fer4_NifH	PF00142.13	gi|385802316|ref|YP_005838718.1|	-	0.0098	15.1	0.0	0.016	14.3	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
YhjQ	PF06564.7	gi|385802316|ref|YP_005838718.1|	-	0.011	15.1	0.0	0.019	14.3	0.0	1.3	1	0	0	1	1	1	0	YhjQ	protein
AAA_10	PF12846.2	gi|385802316|ref|YP_005838718.1|	-	0.019	14.3	0.0	0.47	9.8	0.0	2.2	1	1	1	2	2	2	0	AAA-like	domain
AAA_19	PF13245.1	gi|385802316|ref|YP_005838718.1|	-	0.071	12.8	1.4	0.19	11.5	0.5	2.1	2	1	0	2	2	2	0	Part	of	AAA	domain
NB-ARC	PF00931.17	gi|385802317|ref|YP_005838719.1|	-	1.5e-06	27.3	0.0	0.053	12.3	0.0	2.5	2	0	0	2	2	2	2	NB-ARC	domain
AAA_22	PF13401.1	gi|385802317|ref|YP_005838719.1|	-	0.00011	22.3	0.0	0.00042	20.4	0.0	2.0	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|385802317|ref|YP_005838719.1|	-	0.0026	17.7	0.4	0.046	13.6	0.3	2.6	1	1	0	1	1	1	1	AAA	ATPase	domain
NACHT	PF05729.7	gi|385802317|ref|YP_005838719.1|	-	0.037	13.7	0.0	0.098	12.3	0.0	1.8	1	0	0	1	1	1	0	NACHT	domain
Phage_integrase	PF00589.17	gi|385802318|ref|YP_005838720.1|	-	1.2e-12	47.8	0.0	1.2e-11	44.5	0.0	2.3	1	1	0	1	1	1	1	Phage	integrase	family
Hormone_3	PF00159.13	gi|385802319|ref|YP_005838721.1|	-	0.039	13.9	4.0	0.041	13.8	0.8	2.3	2	0	0	2	2	2	0	Pancreatic	hormone	peptide
Pentapeptide	PF00805.17	gi|385802320|ref|YP_005838722.1|	-	3.9e-122	396.2	143.6	8e-14	50.5	5.7	14.3	5	4	8	15	15	15	15	Pentapeptide	repeats	(8	copies)
Pentapeptide_4	PF13599.1	gi|385802320|ref|YP_005838722.1|	-	1.5e-82	271.3	39.4	5.6e-14	51.7	1.2	8.7	1	1	9	10	10	10	10	Pentapeptide	repeats	(9	copies)
Pentapeptide_3	PF13576.1	gi|385802320|ref|YP_005838722.1|	-	3.4e-58	193.2	26.8	1.4e-06	28.0	0.9	13.2	3	3	6	10	10	10	10	Pentapeptide	repeats	(9	copies)
AAA_22	PF13401.1	gi|385802322|ref|YP_005838724.1|	-	0.00069	19.7	0.7	0.032	14.3	0.3	2.9	2	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|385802322|ref|YP_005838724.1|	-	0.0062	16.5	0.0	0.023	14.6	0.0	2.0	2	1	0	2	2	2	1	AAA	ATPase	domain
Glyco_hydro_38	PF01074.17	gi|385802322|ref|YP_005838724.1|	-	0.0065	15.7	0.3	0.43	9.7	0.2	2.6	2	1	0	2	2	2	1	Glycosyl	hydrolases	family	38	N-terminal	domain
AAA_19	PF13245.1	gi|385802322|ref|YP_005838724.1|	-	0.052	13.3	0.0	0.14	11.9	0.0	1.6	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_14	PF13173.1	gi|385802322|ref|YP_005838724.1|	-	0.13	12.1	0.5	2.8	7.8	0.4	2.7	1	1	0	1	1	1	0	AAA	domain
CK2S	PF15011.1	gi|385802323|ref|YP_005838725.1|	-	0.0025	17.5	4.6	0.07	12.9	0.3	3.3	4	0	0	4	4	4	2	Casein	Kinase	2	substrate
Nsp1_C	PF05064.8	gi|385802323|ref|YP_005838725.1|	-	3.9	7.1	25.4	0.13	11.8	0.2	4.7	5	0	0	5	5	5	0	Nsp1-like	C-terminal	region
DUF948	PF06103.6	gi|385802324|ref|YP_005838726.1|	-	0.021	14.7	0.2	0.021	14.7	0.1	6.3	7	3	3	10	10	10	0	Bacterial	protein	of	unknown	function	(DUF948)
Homeobox_KN	PF05920.6	gi|385802324|ref|YP_005838726.1|	-	0.021	14.5	1.9	6.9	6.4	0.0	4.6	4	0	0	4	4	4	0	Homeobox	KN	domain
DUF2443	PF10398.4	gi|385802324|ref|YP_005838726.1|	-	0.71	9.7	12.8	4.1	7.2	0.0	5.3	4	1	0	4	4	4	0	Protein	of	unknown	function	(DUF2443)
DUF2959	PF11172.3	gi|385802324|ref|YP_005838726.1|	-	2.4	7.8	27.4	0.017	14.8	2.0	5.1	5	1	1	6	6	6	0	Protein	of	unknown	function	(DUF2959)
TctB	PF07331.6	gi|385802326|ref|YP_005838728.1|	-	0.013	15.2	0.4	0.015	14.9	0.3	1.0	1	0	0	1	1	1	0	Tripartite	tricarboxylate	transporter	TctB	family
NrfD	PF03916.9	gi|385802326|ref|YP_005838728.1|	-	0.027	13.9	1.1	0.029	13.7	0.7	1.1	1	0	0	1	1	1	0	Polysulphide	reductase,	NrfD
ATPase_gene1	PF09527.5	gi|385802326|ref|YP_005838728.1|	-	0.073	12.8	0.5	0.073	12.8	0.3	1.9	2	0	0	2	2	2	0	Putative	F0F1-ATPase	subunit	(ATPase_gene1)
Claudin_2	PF13903.1	gi|385802326|ref|YP_005838728.1|	-	0.11	12.1	2.1	0.11	12.1	1.5	1.0	1	0	0	1	1	1	0	PMP-22/EMP/MP20/Claudin	tight	junction
PepSY_TM_1	PF13172.1	gi|385802326|ref|YP_005838728.1|	-	1.5	8.6	4.9	1.4	8.7	0.1	2.6	2	1	1	3	3	3	0	PepSY-associated	TM	helix
AAA_16	PF13191.1	gi|385802328|ref|YP_005838730.1|	-	6.3e-15	55.6	0.1	1.9e-14	54.0	0.0	1.8	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.24	gi|385802328|ref|YP_005838730.1|	-	4.4e-13	49.5	0.0	1e-12	48.3	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Cdc6_C	PF09079.6	gi|385802328|ref|YP_005838730.1|	-	3.7e-09	36.1	0.1	8.7e-09	34.9	0.1	1.7	1	0	0	1	1	1	1	CDC6,	C	terminal
AAA_22	PF13401.1	gi|385802328|ref|YP_005838730.1|	-	1.1e-08	35.2	0.0	2.9e-08	33.9	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
DUF815	PF05673.8	gi|385802328|ref|YP_005838730.1|	-	2e-06	26.9	0.0	4.7e-06	25.7	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
Arch_ATPase	PF01637.13	gi|385802328|ref|YP_005838730.1|	-	1.5e-05	24.8	0.0	3e-05	23.8	0.0	1.5	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_17	PF13207.1	gi|385802328|ref|YP_005838730.1|	-	0.00016	22.5	1.2	0.015	16.0	0.9	2.8	1	1	0	1	1	1	1	AAA	domain
Sigma54_activat	PF00158.21	gi|385802328|ref|YP_005838730.1|	-	0.0019	17.7	0.0	0.0045	16.4	0.0	1.6	2	0	0	2	2	1	1	Sigma-54	interaction	domain
AAA_10	PF12846.2	gi|385802328|ref|YP_005838730.1|	-	0.0071	15.8	0.4	0.061	12.7	0.0	2.4	1	1	2	3	3	3	1	AAA-like	domain
RNA_helicase	PF00910.17	gi|385802328|ref|YP_005838730.1|	-	0.0076	16.4	0.0	0.028	14.6	0.0	2.0	2	0	0	2	2	2	1	RNA	helicase
AAA_19	PF13245.1	gi|385802328|ref|YP_005838730.1|	-	0.011	15.4	0.0	0.028	14.1	0.0	1.7	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_29	PF13555.1	gi|385802328|ref|YP_005838730.1|	-	0.012	15.0	0.0	0.026	14.0	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.1	gi|385802328|ref|YP_005838730.1|	-	0.013	14.9	0.0	0.046	13.1	0.0	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_PrkA	PF08298.6	gi|385802328|ref|YP_005838730.1|	-	0.017	13.8	0.0	0.027	13.1	0.0	1.3	1	0	0	1	1	1	0	PrkA	AAA	domain
NACHT	PF05729.7	gi|385802328|ref|YP_005838730.1|	-	0.022	14.3	0.0	0.052	13.2	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
IstB_IS21	PF01695.12	gi|385802328|ref|YP_005838730.1|	-	0.033	13.5	0.1	0.22	10.9	0.0	2.3	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_14	PF13173.1	gi|385802328|ref|YP_005838730.1|	-	0.044	13.6	0.3	0.33	10.8	0.0	2.5	2	1	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.22	gi|385802328|ref|YP_005838730.1|	-	0.046	14.0	0.2	0.19	12.0	0.0	2.1	2	1	0	2	2	2	0	ABC	transporter
DUF258	PF03193.11	gi|385802328|ref|YP_005838730.1|	-	0.051	12.7	0.0	0.11	11.7	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
MMR_HSR1	PF01926.18	gi|385802328|ref|YP_005838730.1|	-	0.052	13.5	0.3	0.16	11.8	0.0	2.0	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_5	PF07728.9	gi|385802328|ref|YP_005838730.1|	-	0.055	13.1	0.1	0.28	10.9	0.0	2.2	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.1	gi|385802328|ref|YP_005838730.1|	-	0.06	13.2	0.3	0.74	9.6	0.0	2.7	2	1	0	2	2	2	0	AAA	domain
Mg_chelatase	PF01078.16	gi|385802328|ref|YP_005838730.1|	-	0.088	11.9	0.0	0.16	11.1	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
cobW	PF02492.14	gi|385802328|ref|YP_005838730.1|	-	0.11	11.9	0.0	0.25	10.7	0.0	1.7	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_23	PF13476.1	gi|385802328|ref|YP_005838730.1|	-	0.11	12.7	1.4	0.32	11.2	0.9	2.2	1	1	0	1	1	1	0	AAA	domain
zf-ribbon_3	PF13248.1	gi|385802330|ref|YP_005838732.1|	-	4.6e-06	25.6	1.9	6.9e-06	25.1	1.3	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|385802330|ref|YP_005838732.1|	-	7.9e-05	22.3	1.2	0.00012	21.8	0.8	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|385802330|ref|YP_005838732.1|	-	8.5e-05	21.9	4.1	0.00015	21.1	2.8	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
Nudix_N_2	PF14803.1	gi|385802330|ref|YP_005838732.1|	-	0.021	14.4	2.3	3.9	7.2	0.0	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
zf-C3HC4_3	PF13920.1	gi|385802330|ref|YP_005838732.1|	-	0.13	11.9	0.2	0.18	11.5	0.1	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
NOB1_Zn_bind	PF08772.6	gi|385802330|ref|YP_005838732.1|	-	0.14	11.9	0.4	0.21	11.4	0.2	1.3	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
UPF0547	PF10571.4	gi|385802330|ref|YP_005838732.1|	-	0.18	11.5	1.2	0.37	10.5	0.8	1.5	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
zf-IS66	PF13005.2	gi|385802330|ref|YP_005838732.1|	-	0.48	10.4	2.8	3.9	7.5	0.1	2.3	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
TF_Zn_Ribbon	PF08271.7	gi|385802330|ref|YP_005838732.1|	-	3.3	7.0	7.1	42	3.5	5.0	2.2	1	1	0	1	1	1	0	TFIIB	zinc-binding
zf-NADH-PPase	PF09297.6	gi|385802330|ref|YP_005838732.1|	-	4	7.0	6.7	1.7e+02	1.8	4.9	2.2	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-ribbon_3	PF13248.1	gi|385802331|ref|YP_005838733.1|	-	5.8e-08	31.6	4.4	1e-07	30.8	3.1	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|385802331|ref|YP_005838733.1|	-	1.5e-07	30.6	5.7	2.5e-07	29.9	4.0	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|385802331|ref|YP_005838733.1|	-	2.3e-05	24.1	1.2	4.3e-05	23.2	0.8	1.4	1	0	0	1	1	1	1	Double	zinc	ribbon
Nudix_N_2	PF14803.1	gi|385802331|ref|YP_005838733.1|	-	0.0025	17.4	2.1	0.47	10.1	0.0	2.4	2	0	0	2	2	2	2	Nudix	N-terminal
RNHCP	PF12647.2	gi|385802331|ref|YP_005838733.1|	-	0.11	12.2	0.5	0.25	11.1	0.2	1.7	2	0	0	2	2	2	0	RNHCP	domain
UPF0547	PF10571.4	gi|385802331|ref|YP_005838733.1|	-	0.14	11.8	1.9	0.65	9.7	1.5	2.0	1	1	1	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-NADH-PPase	PF09297.6	gi|385802331|ref|YP_005838733.1|	-	0.2	11.1	1.1	5.3	6.6	0.0	2.4	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
RNA_POL_M_15KD	PF02150.11	gi|385802331|ref|YP_005838733.1|	-	0.47	10.1	2.2	12	5.6	0.0	2.4	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
GFA	PF04828.9	gi|385802331|ref|YP_005838733.1|	-	0.58	10.1	3.0	12	5.9	0.1	2.6	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
TF_Zn_Ribbon	PF08271.7	gi|385802331|ref|YP_005838733.1|	-	2.4	7.5	7.1	22	4.4	4.9	2.4	1	1	0	1	1	1	0	TFIIB	zinc-binding
DUF1610	PF07754.6	gi|385802331|ref|YP_005838733.1|	-	4	7.6	8.2	15	5.7	4.5	2.8	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF1610)
RPEL	PF02755.10	gi|385802335|ref|YP_005838737.1|	-	0.0045	16.2	2.3	0.17	11.2	0.1	2.7	2	0	0	2	2	2	2	RPEL	repeat
Complex1_LYR	PF05347.10	gi|385802335|ref|YP_005838737.1|	-	0.017	14.9	0.0	2.2	8.1	0.0	2.4	2	0	0	2	2	2	0	Complex	1	protein	(LYR	family)
Peptidase_S49	PF01343.13	gi|385802335|ref|YP_005838737.1|	-	0.14	11.9	0.0	0.18	11.5	0.0	1.2	1	0	0	1	1	1	0	Peptidase	family	S49
DUF91	PF01939.11	gi|385802336|ref|YP_005838738.1|	-	6.2e-07	28.8	0.0	1e-06	28.0	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF91
DUF3089	PF11288.3	gi|385802336|ref|YP_005838738.1|	-	0.09	11.9	0.0	0.16	11.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3089)
HTH_24	PF13412.1	gi|385802339|ref|YP_005838741.1|	-	0.0018	17.6	0.4	0.003	16.9	0.3	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|385802339|ref|YP_005838741.1|	-	0.0031	17.2	0.0	0.039	13.7	0.0	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
Replic_Relax	PF13814.1	gi|385802339|ref|YP_005838741.1|	-	0.0047	16.7	0.1	0.0095	15.8	0.0	1.5	1	1	0	1	1	1	1	Replication-relaxation
TPX2	PF06886.6	gi|385802339|ref|YP_005838741.1|	-	0.051	13.6	0.6	0.41	10.7	0.0	2.5	2	1	0	2	2	2	0	Targeting	protein	for	Xklp2	(TPX2)
HTH_34	PF13601.1	gi|385802339|ref|YP_005838741.1|	-	0.052	13.5	0.7	0.094	12.7	0.2	1.7	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_45	PF14947.1	gi|385802339|ref|YP_005838741.1|	-	0.061	13.1	0.6	0.15	11.9	0.4	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix
B-block_TFIIIC	PF04182.7	gi|385802339|ref|YP_005838741.1|	-	0.14	11.9	0.8	0.23	11.3	0.1	1.7	2	0	0	2	2	2	0	B-block	binding	subunit	of	TFIIIC
Mlo	PF03094.10	gi|385802340|ref|YP_005838742.1|	-	0.051	11.6	1.8	0.059	11.4	1.3	1.0	1	0	0	1	1	1	0	Mlo	family
VKOR	PF07884.9	gi|385802340|ref|YP_005838742.1|	-	0.17	11.7	5.4	0.2	11.5	3.8	1.1	1	0	0	1	1	1	0	Vitamin	K	epoxide	reductase	family
NS3_envE	PF02723.9	gi|385802340|ref|YP_005838742.1|	-	0.45	10.4	3.0	0.63	9.9	2.1	1.3	1	0	0	1	1	1	0	Non-structural	protein	NS3/Small	envelope	protein	E
L_biotic_typeA	PF04604.8	gi|385802341|ref|YP_005838743.1|	-	0.11	12.1	0.1	0.16	11.6	0.1	1.3	1	0	0	1	1	1	0	Type-A	lantibiotic
DUF2555	PF10742.4	gi|385802341|ref|YP_005838743.1|	-	0.12	12.0	0.3	0.31	10.6	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2555)
Lipoprotein_19	PF13617.1	gi|385802344|ref|YP_005838746.1|	-	0.038	13.6	0.0	0.075	12.6	0.0	1.5	1	0	0	1	1	1	0	YnbE-like	lipoprotein
CBS	PF00571.23	gi|385802344|ref|YP_005838746.1|	-	0.059	13.1	0.0	0.13	12.1	0.0	1.5	1	0	0	1	1	1	0	CBS	domain
Mrr_cat	PF04471.7	gi|385802345|ref|YP_005838747.1|	-	1.3e-26	92.6	0.0	1.8e-26	92.2	0.0	1.2	1	0	0	1	1	1	1	Restriction	endonuclease
Mrr_cat_2	PF13156.1	gi|385802345|ref|YP_005838747.1|	-	1.4e-06	28.2	0.0	1.9e-06	27.8	0.0	1.2	1	0	0	1	1	1	1	Restriction	endonuclease
DUF262	PF03235.9	gi|385802346|ref|YP_005838748.1|	-	1.6e-27	96.9	0.2	1.6e-27	96.9	0.1	2.7	3	0	0	3	3	3	1	Protein	of	unknown	function	DUF262
AAA_4	PF04326.9	gi|385802346|ref|YP_005838748.1|	-	4.5e-20	72.0	0.2	1.2e-19	70.6	0.1	1.8	1	0	0	1	1	1	1	Divergent	AAA	domain
DUF1524	PF07510.6	gi|385802346|ref|YP_005838748.1|	-	2.6e-09	37.0	0.1	8.2e-09	35.4	0.1	1.9	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1524)
DUF2968	PF11180.3	gi|385802346|ref|YP_005838748.1|	-	0.013	14.8	0.1	0.031	13.6	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2968)
Peripla_BP_3	PF13377.1	gi|385802347|ref|YP_005838749.1|	-	0.052	13.5	0.1	4.8	7.1	0.0	2.7	2	1	1	3	3	3	0	Periplasmic	binding	protein-like	domain
DUF3080	PF11279.3	gi|385802347|ref|YP_005838749.1|	-	0.072	12.2	5.3	0.098	11.7	3.7	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3080)
Tho2	PF11262.3	gi|385802347|ref|YP_005838749.1|	-	0.095	11.7	4.0	0.15	11.0	2.8	1.4	1	0	0	1	1	1	0	Transcription	factor/nuclear	export	subunit	protein	2
DUF1515	PF07439.6	gi|385802347|ref|YP_005838749.1|	-	0.095	12.5	3.2	0.31	10.8	2.2	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1515)
PFEMP	PF03011.10	gi|385802347|ref|YP_005838749.1|	-	0.12	12.7	6.3	0.23	11.7	4.4	1.5	1	0	0	1	1	1	0	PFEMP	DBL	domain
Macoilin	PF09726.4	gi|385802347|ref|YP_005838749.1|	-	0.2	9.9	11.2	0.25	9.5	7.7	1.2	1	0	0	1	1	1	0	Transmembrane	protein
Utp11	PF03998.8	gi|385802347|ref|YP_005838749.1|	-	0.36	10.6	12.8	0.51	10.1	8.9	1.3	1	0	0	1	1	1	0	Utp11	protein
BTV_NS2	PF04514.7	gi|385802347|ref|YP_005838749.1|	-	0.45	9.3	10.8	0.53	9.1	7.5	1.2	1	0	0	1	1	1	0	Bluetongue	virus	non-structural	protein	NS2
YscO	PF07321.7	gi|385802347|ref|YP_005838749.1|	-	0.54	10.0	13.9	0.091	12.5	6.6	2.0	2	0	0	2	2	2	0	Type	III	secretion	protein	YscO
CENP-Q	PF13094.1	gi|385802347|ref|YP_005838749.1|	-	0.57	10.2	16.7	0.82	9.6	10.9	1.6	1	1	1	2	2	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
CorA	PF01544.13	gi|385802347|ref|YP_005838749.1|	-	0.58	9.1	4.7	1.1	8.2	2.9	1.6	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
Spc7	PF08317.6	gi|385802347|ref|YP_005838749.1|	-	0.69	8.5	14.1	1.1	7.8	9.5	1.4	1	1	0	1	1	1	0	Spc7	kinetochore	protein
APG6	PF04111.7	gi|385802347|ref|YP_005838749.1|	-	2	7.4	11.8	2.4	7.0	8.2	1.2	1	0	0	1	1	1	0	Autophagy	protein	Apg6
SlyX	PF04102.7	gi|385802347|ref|YP_005838749.1|	-	2.4	8.5	9.8	4	7.8	0.5	3.2	2	1	1	3	3	3	0	SlyX
DHHW	PF14286.1	gi|385802347|ref|YP_005838749.1|	-	3.2	6.9	7.8	4.2	6.5	5.4	1.2	1	0	0	1	1	1	0	DHHW	protein
EAP30	PF04157.11	gi|385802347|ref|YP_005838749.1|	-	5	6.2	10.4	12	4.9	0.4	2.6	1	1	1	2	2	2	0	EAP30/Vps36	family
DUF507	PF04368.8	gi|385802347|ref|YP_005838749.1|	-	5.9	6.4	12.9	0.92	9.1	5.4	2.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF507)
V_ATPase_I	PF01496.14	gi|385802347|ref|YP_005838749.1|	-	6.7	4.4	7.5	7.4	4.2	5.2	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
AAA_13	PF13166.1	gi|385802347|ref|YP_005838749.1|	-	7.3	4.9	17.4	5.3	5.3	8.2	2.0	1	1	1	2	2	2	0	AAA	domain
Exonuc_VII_S	PF02609.11	gi|385802348|ref|YP_005838750.1|	-	0.084	12.6	1.2	0.22	11.2	0.8	2.0	1	1	0	1	1	1	0	Exonuclease	VII	small	subunit
DUF2365	PF10157.4	gi|385802348|ref|YP_005838750.1|	-	0.091	12.6	0.4	0.21	11.4	0.3	1.6	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2365)
Peptidase_M41	PF01434.13	gi|385802348|ref|YP_005838750.1|	-	0.11	12.0	0.1	0.13	11.7	0.1	1.1	1	0	0	1	1	1	0	Peptidase	family	M41
ParBc	PF02195.13	gi|385802350|ref|YP_005838752.1|	-	2e-16	59.8	0.3	9.6e-16	57.6	0.1	2.2	3	0	0	3	3	3	1	ParB-like	nuclease	domain
DUF488	PF04343.8	gi|385802350|ref|YP_005838752.1|	-	8.7e-14	51.9	0.0	3.2e-13	50.1	0.0	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function,	DUF488
Sigma70_r4_2	PF08281.7	gi|385802350|ref|YP_005838752.1|	-	0.0083	15.5	0.0	1.7	8.1	0.0	2.9	3	0	0	3	3	3	1	Sigma-70,	region	4
DUF262	PF03235.9	gi|385802350|ref|YP_005838752.1|	-	0.085	12.8	0.8	0.21	11.5	0.6	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF262
PucR	PF07905.6	gi|385802350|ref|YP_005838752.1|	-	0.15	11.6	0.0	2.6	7.6	0.0	2.3	2	0	0	2	2	2	0	Purine	catabolism	regulatory	protein-like	family
ASCH	PF04266.9	gi|385802351|ref|YP_005838753.1|	-	0.029	14.7	0.4	0.059	13.7	0.3	1.4	1	0	0	1	1	1	0	ASCH	domain
PadR	PF03551.9	gi|385802352|ref|YP_005838754.1|	-	7.1e-12	44.9	1.5	1.2e-11	44.2	1.1	1.4	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_5	PF01022.15	gi|385802352|ref|YP_005838754.1|	-	2.7e-08	33.3	0.0	8.9e-08	31.6	0.0	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|385802352|ref|YP_005838754.1|	-	3.2e-07	30.0	0.0	5.4e-07	29.3	0.0	1.4	1	1	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|385802352|ref|YP_005838754.1|	-	7.2e-07	28.8	0.1	9.7e-07	28.4	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|385802352|ref|YP_005838754.1|	-	1.1e-05	24.7	0.0	0.0012	18.1	0.0	2.1	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.7	gi|385802352|ref|YP_005838754.1|	-	0.00034	20.2	0.0	0.00057	19.4	0.0	1.5	1	1	0	1	1	1	1	HTH	domain
PaaX	PF07848.7	gi|385802352|ref|YP_005838754.1|	-	0.00056	19.8	0.1	0.0013	18.6	0.1	1.6	1	1	1	2	2	2	1	PaaX-like	protein
HTH_27	PF13463.1	gi|385802352|ref|YP_005838754.1|	-	0.00063	20.0	0.0	0.0009	19.5	0.0	1.3	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_34	PF13601.1	gi|385802352|ref|YP_005838754.1|	-	0.0007	19.5	0.0	0.00084	19.3	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF3116	PF11313.3	gi|385802352|ref|YP_005838754.1|	-	0.0012	18.4	0.1	0.0019	17.7	0.1	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3116)
DUF2513	PF10711.4	gi|385802352|ref|YP_005838754.1|	-	0.0015	18.5	0.0	0.0019	18.2	0.0	1.1	1	0	0	1	1	1	1	Hypothetical	protein	(DUF2513)
HTH_45	PF14947.1	gi|385802352|ref|YP_005838754.1|	-	0.0054	16.5	0.5	0.011	15.5	0.1	1.6	2	0	0	2	2	2	1	Winged	helix-turn-helix
Fe_dep_repress	PF01325.14	gi|385802352|ref|YP_005838754.1|	-	0.018	14.9	0.1	0.048	13.6	0.0	1.8	2	1	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DUF4364	PF14277.1	gi|385802352|ref|YP_005838754.1|	-	0.024	14.2	0.1	0.035	13.7	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
HTH_IclR	PF09339.5	gi|385802352|ref|YP_005838754.1|	-	0.028	14.0	0.0	0.07	12.7	0.0	1.6	2	0	0	2	2	1	0	IclR	helix-turn-helix	domain
Penicillinase_R	PF03965.11	gi|385802352|ref|YP_005838754.1|	-	0.037	14.1	0.0	0.046	13.8	0.0	1.3	1	1	0	1	1	1	0	Penicillinase	repressor
YjcQ	PF09639.5	gi|385802352|ref|YP_005838754.1|	-	0.037	14.1	0.0	0.039	14.0	0.0	1.2	1	0	0	1	1	1	0	YjcQ	protein
FUR	PF01475.14	gi|385802352|ref|YP_005838754.1|	-	0.039	13.8	0.1	0.17	11.7	0.1	1.8	1	1	0	1	1	1	0	Ferric	uptake	regulator	family
TBPIP	PF07106.8	gi|385802352|ref|YP_005838754.1|	-	0.041	13.4	0.1	0.051	13.1	0.1	1.4	1	1	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
Ribosomal_S19e	PF01090.14	gi|385802352|ref|YP_005838754.1|	-	0.063	12.6	0.1	0.068	12.6	0.1	1.2	1	0	0	1	1	1	0	Ribosomal	protein	S19e
HTH_12	PF08461.5	gi|385802352|ref|YP_005838754.1|	-	0.063	13.0	0.8	0.13	12.0	0.5	1.6	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
HTH_38	PF13936.1	gi|385802352|ref|YP_005838754.1|	-	0.066	12.7	0.3	0.19	11.3	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|385802352|ref|YP_005838754.1|	-	0.089	12.4	0.0	0.12	12.1	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HTH_36	PF13730.1	gi|385802352|ref|YP_005838754.1|	-	0.092	12.8	0.0	0.15	12.2	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
AARP2CN	PF08142.7	gi|385802352|ref|YP_005838754.1|	-	0.1	12.1	0.0	0.11	12.0	0.0	1.1	1	0	0	1	1	1	0	AARP2CN	(NUC121)	domain
Mrr_N	PF14338.1	gi|385802352|ref|YP_005838754.1|	-	0.12	12.4	0.2	0.33	11.0	0.0	1.7	2	0	0	2	2	2	0	Mrr	N-terminal	domain
MarR	PF01047.17	gi|385802352|ref|YP_005838754.1|	-	0.14	11.9	0.0	0.21	11.2	0.0	1.4	1	0	0	1	1	1	0	MarR	family
N6_N4_Mtase	PF01555.13	gi|385802354|ref|YP_005838756.1|	-	5.6e-48	163.4	0.2	6.7e-48	163.1	0.1	1.0	1	0	0	1	1	1	1	DNA	methylase
Methyltransf_26	PF13659.1	gi|385802354|ref|YP_005838756.1|	-	1.8e-08	34.4	0.0	0.00054	19.9	0.0	2.2	2	0	0	2	2	2	2	Methyltransferase	domain
UPF0020	PF01170.13	gi|385802354|ref|YP_005838756.1|	-	1.1e-05	25.1	0.0	0.0023	17.5	0.0	2.3	2	0	0	2	2	2	2	Putative	RNA	methylase	family	UPF0020
7kD_coat	PF02495.12	gi|385802356|ref|YP_005838758.1|	-	0.059	12.8	0.0	0.092	12.2	0.0	1.3	1	0	0	1	1	1	0	7kD	viral	coat	protein
TBP	PF00352.16	gi|385802357|ref|YP_005838759.1|	-	9.3e-30	101.8	0.0	5.5e-16	57.7	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.3	gi|385802357|ref|YP_005838759.1|	-	5.5e-05	23.1	0.0	0.012	15.7	0.0	2.3	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
N6_Mtase	PF02384.11	gi|385802358|ref|YP_005838760.1|	-	2.8e-79	266.4	0.0	4e-79	265.9	0.0	1.1	1	0	0	1	1	1	1	N-6	DNA	Methylase
HsdM_N	PF12161.3	gi|385802358|ref|YP_005838760.1|	-	2.4e-21	76.6	0.1	2.4e-21	76.6	0.0	2.5	2	1	1	3	3	3	1	HsdM	N-terminal	domain
Methyltransf_26	PF13659.1	gi|385802358|ref|YP_005838760.1|	-	1.2e-09	38.1	0.0	2.5e-09	37.2	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|385802358|ref|YP_005838760.1|	-	4.9e-09	36.0	0.0	9.1e-09	35.1	0.0	1.4	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methylase_S	PF01420.14	gi|385802359|ref|YP_005838761.1|	-	3.9e-40	137.5	0.0	4.9e-21	75.4	0.0	2.1	2	0	0	2	2	2	2	Type	I	restriction	modification	DNA	specificity	domain
Methylase_S	PF01420.14	gi|385802360|ref|YP_005838762.1|	-	2e-24	86.4	0.0	3.9e-11	43.2	0.0	2.2	2	0	0	2	2	2	2	Type	I	restriction	modification	DNA	specificity	domain
HSDR_N	PF04313.9	gi|385802361|ref|YP_005838763.1|	-	7.7e-36	123.6	0.1	7.7e-36	123.6	0.0	2.7	3	1	1	4	4	4	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
ResIII	PF04851.10	gi|385802361|ref|YP_005838763.1|	-	2.3e-18	66.6	0.0	5.9e-18	65.3	0.0	1.7	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DUF3387	PF11867.3	gi|385802361|ref|YP_005838763.1|	-	1.6e-13	50.3	5.4	1.6e-13	50.3	3.8	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF3387)
Helicase_C	PF00271.26	gi|385802361|ref|YP_005838763.1|	-	0.012	15.4	0.0	0.046	13.5	0.0	2.0	2	0	0	2	2	2	0	Helicase	conserved	C-terminal	domain
UvrD-helicase	PF00580.16	gi|385802361|ref|YP_005838763.1|	-	0.014	14.7	0.6	0.72	9.0	0.0	3.1	2	1	0	2	2	2	0	UvrD/REP	helicase	N-terminal	domain
WGG	PF10273.4	gi|385802361|ref|YP_005838763.1|	-	0.032	14.3	3.7	0.55	10.3	0.3	3.8	3	0	0	3	3	3	0	Pre-rRNA-processing	protein	TSR2
AAA_22	PF13401.1	gi|385802361|ref|YP_005838763.1|	-	0.067	13.3	0.0	0.38	10.9	0.0	2.3	1	0	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|385802361|ref|YP_005838763.1|	-	0.39	10.1	8.7	0.97	8.8	0.0	3.9	2	2	1	3	3	3	0	AAA-like	domain
DUF45	PF01863.12	gi|385802362|ref|YP_005838764.1|	-	2e-57	194.2	1.8	2.7e-57	193.8	1.3	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF45
WLM	PF08325.5	gi|385802362|ref|YP_005838764.1|	-	6.9e-05	22.8	0.1	0.00014	21.7	0.1	1.5	1	0	0	1	1	1	1	WLM	domain
Peptidase_M64	PF09471.5	gi|385802362|ref|YP_005838764.1|	-	0.053	13.1	0.1	0.082	12.5	0.1	1.3	1	0	0	1	1	1	0	IgA	Peptidase	M64
SprT-like	PF10263.4	gi|385802362|ref|YP_005838764.1|	-	0.086	12.4	0.0	0.14	11.8	0.0	1.3	1	0	0	1	1	1	0	SprT-like	family
TBP	PF00352.16	gi|385802363|ref|YP_005838765.1|	-	6e-35	118.4	0.0	1.1e-22	79.1	0.0	2.1	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
Moulting_cycle	PF04870.11	gi|385802365|ref|YP_005838767.1|	-	0.057	12.4	0.1	0.067	12.2	0.1	1.1	1	0	0	1	1	1	0	Moulting	cycle
TMCO5	PF14992.1	gi|385802366|ref|YP_005838768.1|	-	0.002	17.2	9.2	0.0028	16.8	6.4	1.2	1	0	0	1	1	1	1	TMCO5	family
RasGAP	PF00616.14	gi|385802366|ref|YP_005838768.1|	-	0.022	14.4	1.3	0.033	13.8	0.9	1.3	1	0	0	1	1	1	0	GTPase-activator	protein	for	Ras-like	GTPase
HSBP1	PF06825.7	gi|385802366|ref|YP_005838768.1|	-	0.054	13.0	0.5	0.054	13.0	0.4	3.3	3	0	0	3	3	3	0	Heat	shock	factor	binding	protein	1
GOLGA2L5	PF15070.1	gi|385802366|ref|YP_005838768.1|	-	0.06	11.8	7.2	0.091	11.2	5.0	1.2	1	0	0	1	1	1	0	Putative	golgin	subfamily	A	member	2-like	protein	5
NPV_P10	PF05531.7	gi|385802366|ref|YP_005838768.1|	-	0.091	13.0	7.6	9.6	6.5	2.6	3.5	2	2	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
SlyX	PF04102.7	gi|385802366|ref|YP_005838768.1|	-	0.099	13.0	8.6	0.32	11.4	0.9	3.2	3	1	1	4	4	3	0	SlyX
Synaptobrevin	PF00957.16	gi|385802366|ref|YP_005838768.1|	-	0.16	11.6	6.0	1.8	8.2	1.8	2.6	1	1	1	2	2	2	0	Synaptobrevin
RRN3	PF05327.6	gi|385802366|ref|YP_005838768.1|	-	0.28	9.2	6.5	0.35	8.9	4.5	1.1	1	0	0	1	1	1	0	RNA	polymerase	I	specific	transcription	initiation	factor	RRN3
AAA_13	PF13166.1	gi|385802366|ref|YP_005838768.1|	-	0.37	9.1	11.3	1.4	7.2	4.0	2.0	1	1	1	2	2	2	0	AAA	domain
DUF768	PF05589.6	gi|385802366|ref|YP_005838768.1|	-	0.4	10.6	4.1	0.26	11.2	0.5	2.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF768)
Sigma70_ner	PF04546.8	gi|385802366|ref|YP_005838768.1|	-	0.43	10.1	12.4	0.47	10.0	7.4	1.8	2	0	0	2	2	2	0	Sigma-70,	non-essential	region
Herpes_UL6	PF01763.11	gi|385802366|ref|YP_005838768.1|	-	0.49	8.4	5.0	0.83	7.7	3.5	1.4	1	0	0	1	1	1	0	Herpesvirus	UL6	like
RNase_H2-Ydr279	PF09468.5	gi|385802366|ref|YP_005838768.1|	-	0.69	9.0	6.5	1	8.4	4.5	1.2	1	0	0	1	1	1	0	Ydr279p	protein	family	(RNase	H2	complex	component)
DUF972	PF06156.8	gi|385802366|ref|YP_005838768.1|	-	0.94	9.8	5.9	1.4	9.2	3.9	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF972)
Presenilin	PF01080.12	gi|385802366|ref|YP_005838768.1|	-	0.98	8.1	8.2	1.2	7.9	5.7	1.1	1	0	0	1	1	1	0	Presenilin
DUF2407_C	PF13373.1	gi|385802366|ref|YP_005838768.1|	-	1.1	9.1	4.7	1.9	8.4	3.3	1.4	1	0	0	1	1	1	0	DUF2407	C-terminal	domain
DUF2203	PF09969.4	gi|385802366|ref|YP_005838768.1|	-	1.2	9.4	4.6	17	5.6	3.2	2.3	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2203)
Hid1	PF12722.2	gi|385802366|ref|YP_005838768.1|	-	1.2	6.7	6.7	1.4	6.5	4.6	1.0	1	0	0	1	1	1	0	High-temperature-induced	dauer-formation	protein
HAUS6_N	PF14661.1	gi|385802366|ref|YP_005838768.1|	-	1.3	8.3	3.9	1.8	7.8	2.7	1.3	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	6	N-terminus
Atg14	PF10186.4	gi|385802366|ref|YP_005838768.1|	-	1.3	7.8	11.0	1.2	8.0	6.9	1.4	1	1	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
V_ATPase_I	PF01496.14	gi|385802366|ref|YP_005838768.1|	-	1.3	6.7	8.1	1.5	6.6	5.6	1.4	1	1	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
XhlA	PF10779.4	gi|385802366|ref|YP_005838768.1|	-	1.5	8.8	8.1	4.9	7.1	5.6	2.0	1	0	0	1	1	1	0	Haemolysin	XhlA
TMF_DNA_bd	PF12329.3	gi|385802366|ref|YP_005838768.1|	-	1.5	8.6	11.4	9.2	6.1	7.6	2.3	1	1	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
APG6	PF04111.7	gi|385802366|ref|YP_005838768.1|	-	1.6	7.6	7.4	2.2	7.2	5.1	1.1	1	0	0	1	1	1	0	Autophagy	protein	Apg6
DUF1664	PF07889.7	gi|385802366|ref|YP_005838768.1|	-	2.3	8.0	6.1	4	7.2	1.9	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Vfa1	PF08432.5	gi|385802366|ref|YP_005838768.1|	-	2.3	8.1	10.6	3.3	7.6	7.4	1.2	1	0	0	1	1	1	0	AAA-ATPase	Vps4-associated	protein	1
DivIC	PF04977.10	gi|385802366|ref|YP_005838768.1|	-	4.7	6.7	12.8	0.23	10.9	0.5	2.7	2	1	1	3	3	3	0	Septum	formation	initiator
Tom22	PF04281.8	gi|385802366|ref|YP_005838768.1|	-	7.7	6.0	14.0	27	4.2	9.7	2.0	1	1	0	1	1	1	0	Mitochondrial	import	receptor	subunit	Tom22
CCDC-167	PF15188.1	gi|385802366|ref|YP_005838768.1|	-	8	6.4	7.2	10	6.1	2.3	2.4	2	0	0	2	2	2	0	Coiled-coil	domain-containing	protein	167
TAT_signal	PF10518.4	gi|385802367|ref|YP_005838769.1|	-	0.033	14.2	0.1	0.033	14.2	0.0	1.6	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF3093	PF11292.3	gi|385802368|ref|YP_005838770.1|	-	0.12	12.1	0.1	0.18	11.5	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3093)
Pentapeptide	PF00805.17	gi|385802369|ref|YP_005838771.1|	-	2e-40	135.4	31.4	1.2e-11	43.6	1.6	3.7	1	1	3	4	4	4	4	Pentapeptide	repeats	(8	copies)
Pentapeptide_4	PF13599.1	gi|385802369|ref|YP_005838771.1|	-	4.4e-25	87.2	0.5	2.8e-12	46.2	0.1	2.1	1	1	1	2	2	2	2	Pentapeptide	repeats	(9	copies)
Pentapeptide_3	PF13576.1	gi|385802369|ref|YP_005838771.1|	-	7.4e-14	51.3	0.2	1.7e-06	27.8	0.6	3.4	1	1	1	2	2	2	2	Pentapeptide	repeats	(9	copies)
Methyltransf_12	PF08242.7	gi|385802369|ref|YP_005838771.1|	-	0.09	13.2	0.4	2.3	8.7	0.3	2.2	1	1	0	1	1	1	0	Methyltransferase	domain
Cdc6_C	PF09079.6	gi|385802370|ref|YP_005838772.1|	-	1e-18	66.8	0.3	3.4e-18	65.1	0.1	2.0	2	0	0	2	2	2	1	CDC6,	C	terminal
AAA_16	PF13191.1	gi|385802370|ref|YP_005838772.1|	-	1.5e-09	38.1	0.6	5.8e-09	36.2	0.0	2.2	2	2	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|385802370|ref|YP_005838772.1|	-	2.6e-09	37.3	0.1	1.4e-07	31.7	0.0	2.4	2	1	0	2	2	2	1	AAA	domain
NACHT	PF05729.7	gi|385802370|ref|YP_005838772.1|	-	5.6e-06	26.1	0.0	1.6e-05	24.6	0.0	1.8	2	0	0	2	2	2	1	NACHT	domain
AAA	PF00004.24	gi|385802370|ref|YP_005838772.1|	-	0.00013	22.1	0.0	0.00038	20.6	0.0	1.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RNA_helicase	PF00910.17	gi|385802370|ref|YP_005838772.1|	-	0.00064	19.8	0.0	0.0028	17.7	0.0	2.1	2	1	1	3	3	2	1	RNA	helicase
NB-ARC	PF00931.17	gi|385802370|ref|YP_005838772.1|	-	0.0014	17.5	0.0	0.002	17.0	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
DEAD	PF00270.24	gi|385802370|ref|YP_005838772.1|	-	0.0015	18.0	0.1	0.01	15.3	0.1	2.2	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
Sigma54_activat	PF00158.21	gi|385802370|ref|YP_005838772.1|	-	0.0016	17.9	0.1	0.0063	16.0	0.0	2.0	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_32	PF13654.1	gi|385802370|ref|YP_005838772.1|	-	0.0019	16.9	0.2	1.2	7.7	0.1	2.2	2	0	0	2	2	2	2	AAA	domain
DUF2036	PF09724.4	gi|385802370|ref|YP_005838772.1|	-	0.0099	15.0	0.3	0.11	11.5	0.1	2.1	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2036)
Bac_DnaA	PF00308.13	gi|385802370|ref|YP_005838772.1|	-	0.013	15.1	0.0	1.8	8.1	0.0	2.4	2	0	0	2	2	2	0	Bacterial	dnaA	protein
AAA_10	PF12846.2	gi|385802370|ref|YP_005838772.1|	-	0.014	14.8	0.1	0.13	11.6	0.0	2.4	1	1	0	1	1	1	0	AAA-like	domain
T2SE	PF00437.15	gi|385802370|ref|YP_005838772.1|	-	0.032	13.1	0.0	0.064	12.1	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
LexA_DNA_bind	PF01726.11	gi|385802370|ref|YP_005838772.1|	-	0.036	13.6	0.2	0.81	9.2	0.0	2.8	3	1	0	3	3	3	0	LexA	DNA	binding	domain
PIF1	PF05970.9	gi|385802370|ref|YP_005838772.1|	-	0.061	12.2	0.0	0.1	11.5	0.0	1.3	1	0	0	1	1	1	0	PIF1-like	helicase
HTH_24	PF13412.1	gi|385802370|ref|YP_005838772.1|	-	0.11	11.9	0.1	0.61	9.5	0.0	2.4	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Arch_ATPase	PF01637.13	gi|385802370|ref|YP_005838772.1|	-	0.11	12.1	0.0	0.24	11.0	0.0	1.6	1	1	0	1	1	1	0	Archaeal	ATPase
HTH_IclR	PF09339.5	gi|385802370|ref|YP_005838772.1|	-	0.3	10.6	1.6	1.8	8.2	0.0	2.7	3	0	0	3	3	3	0	IclR	helix-turn-helix	domain
DUF389	PF04087.9	gi|385802371|ref|YP_005838773.1|	-	0.024	14.5	3.3	0.024	14.5	2.3	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF389)
EamA	PF00892.15	gi|385802371|ref|YP_005838773.1|	-	0.065	13.2	1.7	0.073	13.1	1.2	1.1	1	0	0	1	1	1	0	EamA-like	transporter	family
Adeno_E3_CR2	PF02439.10	gi|385802371|ref|YP_005838773.1|	-	1.1	8.9	4.1	2.1	7.9	2.8	1.5	1	0	0	1	1	1	0	Adenovirus	E3	region	protein	CR2
Col_cuticle_N	PF01484.12	gi|385802371|ref|YP_005838773.1|	-	1.4	8.6	6.5	3.4	7.4	0.0	2.2	2	0	0	2	2	2	0	Nematode	cuticle	collagen	N-terminal	domain
SNF2_N	PF00176.18	gi|385802372|ref|YP_005838774.1|	-	1.5e-17	63.3	0.0	4.6e-17	61.7	0.0	1.7	1	1	0	1	1	1	1	SNF2	family	N-terminal	domain
Helicase_C	PF00271.26	gi|385802372|ref|YP_005838774.1|	-	2.2e-15	56.2	0.0	7.4e-15	54.5	0.0	1.9	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|385802372|ref|YP_005838774.1|	-	4.2e-09	36.4	0.2	3.1e-08	33.6	0.0	2.5	2	1	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|385802372|ref|YP_005838774.1|	-	3.6e-05	23.3	0.0	9.4e-05	21.9	0.0	1.7	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
RapA_C	PF12137.3	gi|385802372|ref|YP_005838774.1|	-	0.0006	18.7	0.1	0.0006	18.7	0.1	2.4	4	0	0	4	4	4	1	RNA	polymerase	recycling	family	C-terminal
PTRF_SDPR	PF15237.1	gi|385802372|ref|YP_005838774.1|	-	0.0066	15.8	0.0	0.0066	15.8	0.0	3.0	3	1	1	4	4	4	1	PTRF/SDPR	family
Phage_30_8	PF06019.6	gi|385802372|ref|YP_005838774.1|	-	0.02	14.6	0.0	0.56	9.9	0.0	2.6	2	0	0	2	2	2	0	Phage	GP30.8	protein
N6_Mtase	PF02384.11	gi|385802373|ref|YP_005838775.1|	-	5.9e-11	42.0	0.0	9.9e-05	21.5	0.0	3.6	3	0	0	3	3	3	2	N-6	DNA	Methylase
Methyltransf_26	PF13659.1	gi|385802373|ref|YP_005838775.1|	-	3e-09	36.9	0.0	1.2e-08	34.9	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
Eco57I	PF07669.6	gi|385802373|ref|YP_005838775.1|	-	4.3e-07	30.2	0.0	0.0074	16.6	0.0	2.8	2	0	0	2	2	2	2	Eco57I	restriction-modification	methylase
UPF0020	PF01170.13	gi|385802373|ref|YP_005838775.1|	-	0.026	14.0	0.0	0.31	10.6	0.0	2.2	2	0	0	2	2	2	0	Putative	RNA	methylase	family	UPF0020
DEAD	PF00270.24	gi|385802374|ref|YP_005838776.1|	-	1.2e-21	76.9	0.0	4.6e-21	75.0	0.0	2.0	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
DUF1998	PF09369.5	gi|385802374|ref|YP_005838776.1|	-	9.2e-14	51.7	1.7	2.4e-12	47.2	0.0	3.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1998)
Helicase_C	PF00271.26	gi|385802374|ref|YP_005838776.1|	-	1.8e-12	46.9	0.0	6.2e-12	45.2	0.0	1.9	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
zf-ribbon_3	PF13248.1	gi|385802374|ref|YP_005838776.1|	-	0.00018	20.6	17.6	0.052	12.7	0.3	4.7	4	1	0	4	4	4	3	zinc-ribbon	domain
DZR	PF12773.2	gi|385802374|ref|YP_005838776.1|	-	0.0062	16.3	30.3	0.029	14.1	0.6	5.3	4	1	0	4	4	4	2	Double	zinc	ribbon
RecO_N_2	PF13114.1	gi|385802374|ref|YP_005838776.1|	-	0.039	13.6	0.1	0.082	12.6	0.1	1.6	1	0	0	1	1	1	0	RecO	N	terminal
zf-tcix	PF14952.1	gi|385802374|ref|YP_005838776.1|	-	0.68	9.3	10.0	0.58	9.5	0.2	3.5	3	1	0	3	3	3	0	Putative	treble-clef,	zinc-finger,	Zn-binding
UPF0547	PF10571.4	gi|385802374|ref|YP_005838776.1|	-	0.84	9.3	16.1	0.2	11.3	0.3	4.4	4	0	0	4	4	4	0	Uncharacterised	protein	family	UPF0547
zinc_ribbon_2	PF13240.1	gi|385802374|ref|YP_005838776.1|	-	2.4	7.7	20.0	0.38	10.3	0.1	5.0	5	0	0	5	5	5	0	zinc-ribbon	domain
Auto_anti-p27	PF06677.7	gi|385802374|ref|YP_005838776.1|	-	2.9	7.7	15.7	0.18	11.6	0.4	3.7	4	0	0	4	4	4	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
HTH_23	PF13384.1	gi|385802376|ref|YP_005838777.1|	-	0.0015	18.1	0.5	0.043	13.4	0.0	2.4	2	0	0	2	2	2	1	Homeodomain-like	domain
DUF1899	PF08953.6	gi|385802376|ref|YP_005838777.1|	-	0.15	11.6	0.0	0.29	10.8	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1899)
TrmB	PF01978.14	gi|385802377|ref|YP_005838778.1|	-	0.027	14.1	0.0	0.088	12.5	0.0	1.8	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_15	PF12324.3	gi|385802377|ref|YP_005838778.1|	-	0.11	12.1	0.1	0.42	10.2	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	alkylmercury	lyase
HTH_11	PF08279.7	gi|385802377|ref|YP_005838778.1|	-	0.14	11.8	0.0	0.47	10.1	0.0	1.8	2	0	0	2	2	2	0	HTH	domain
AAA_17	PF13207.1	gi|385802379|ref|YP_005838780.1|	-	0.002	18.9	0.3	0.019	15.7	0.0	2.2	1	1	0	2	2	2	1	AAA	domain
AAA	PF00004.24	gi|385802379|ref|YP_005838780.1|	-	0.0025	18.0	0.0	0.0048	17.0	0.0	1.5	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_25	PF13481.1	gi|385802379|ref|YP_005838780.1|	-	0.0069	15.8	0.3	0.63	9.4	0.1	2.4	1	1	0	1	1	1	1	AAA	domain
HTH_23	PF13384.1	gi|385802379|ref|YP_005838780.1|	-	0.0094	15.5	0.1	0.022	14.4	0.0	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
CbiA	PF01656.18	gi|385802379|ref|YP_005838780.1|	-	0.026	13.9	0.0	0.037	13.4	0.0	1.3	1	0	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
HTH_31	PF13560.1	gi|385802379|ref|YP_005838780.1|	-	0.033	14.3	0.0	0.1	12.8	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
IstB_IS21	PF01695.12	gi|385802379|ref|YP_005838780.1|	-	0.1	11.9	0.1	0.24	10.8	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
ArsA_ATPase	PF02374.10	gi|385802379|ref|YP_005838780.1|	-	0.31	10.0	1.9	0.34	9.8	0.2	1.7	2	0	0	2	2	2	0	Anion-transporting	ATPase
RHH_1	PF01402.16	gi|385802381|ref|YP_005838782.1|	-	0.043	13.7	0.7	0.043	13.7	0.5	2.1	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
Cdc6_C	PF09079.6	gi|385802383|ref|YP_005838783.1|	-	9.2e-28	95.8	0.3	2.9e-27	94.1	0.2	1.9	1	0	0	1	1	1	1	CDC6,	C	terminal
AAA_16	PF13191.1	gi|385802383|ref|YP_005838783.1|	-	1.3e-09	38.3	0.6	2.7e-08	33.9	0.0	2.4	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|385802383|ref|YP_005838783.1|	-	2e-09	37.6	0.4	5.8e-07	29.7	0.3	2.6	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|385802383|ref|YP_005838783.1|	-	7.2e-09	35.9	0.1	0.00072	19.7	0.0	2.6	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Arch_ATPase	PF01637.13	gi|385802383|ref|YP_005838783.1|	-	0.00059	19.6	0.1	0.0026	17.5	0.1	2.0	1	1	0	1	1	1	1	Archaeal	ATPase
NB-ARC	PF00931.17	gi|385802383|ref|YP_005838783.1|	-	0.00063	18.6	0.1	0.0012	17.7	0.0	1.4	1	0	0	1	1	1	1	NB-ARC	domain
T2SE	PF00437.15	gi|385802383|ref|YP_005838783.1|	-	0.00069	18.6	0.0	0.0012	17.8	0.0	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
Sigma54_activat	PF00158.21	gi|385802383|ref|YP_005838783.1|	-	0.002	17.6	0.0	0.0045	16.4	0.0	1.6	1	0	0	1	1	1	1	Sigma-54	interaction	domain
AAA_18	PF13238.1	gi|385802383|ref|YP_005838783.1|	-	0.0029	17.9	0.3	0.019	15.2	0.1	2.5	1	1	1	2	2	2	1	AAA	domain
DUF815	PF05673.8	gi|385802383|ref|YP_005838783.1|	-	0.0033	16.4	0.0	0.0077	15.1	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_17	PF13207.1	gi|385802383|ref|YP_005838783.1|	-	0.0036	18.1	0.1	0.018	15.8	0.1	2.3	1	1	0	1	1	1	1	AAA	domain
DEAD	PF00270.24	gi|385802383|ref|YP_005838783.1|	-	0.0039	16.6	1.2	1.4	8.4	0.0	2.7	3	0	0	3	3	3	2	DEAD/DEAH	box	helicase
AAA_2	PF07724.9	gi|385802383|ref|YP_005838783.1|	-	0.007	16.2	0.1	0.21	11.4	0.0	2.4	1	1	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.7	gi|385802383|ref|YP_005838783.1|	-	0.011	14.8	0.0	0.024	13.6	0.0	1.5	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
ABC_tran	PF00005.22	gi|385802383|ref|YP_005838783.1|	-	0.013	15.7	0.3	0.049	13.9	0.0	2.1	2	0	0	2	2	1	0	ABC	transporter
GHL13	PF14883.1	gi|385802383|ref|YP_005838783.1|	-	0.022	13.9	0.0	0.049	12.7	0.0	1.6	1	0	0	1	1	1	0	Hypothetical	glycosyl	hydrolase	family	13
ToxN_toxin	PF13958.1	gi|385802383|ref|YP_005838783.1|	-	0.035	13.7	0.4	0.084	12.5	0.3	1.5	1	0	0	1	1	1	0	Toxin	ToxN,	type	III	toxin-antitoxin	system
AAA_24	PF13479.1	gi|385802383|ref|YP_005838783.1|	-	0.077	12.5	0.9	0.14	11.7	0.3	1.6	1	1	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.17	gi|385802383|ref|YP_005838783.1|	-	0.09	12.9	0.0	0.25	11.5	0.0	1.9	1	0	0	1	1	1	0	RNA	helicase
RCSD	PF05177.7	gi|385802383|ref|YP_005838783.1|	-	2	8.9	8.2	0.27	11.7	0.2	2.5	2	0	0	2	2	2	0	RCSD	region
Peptidase_S24	PF00717.18	gi|385802384|ref|YP_005838784.1|	-	0.0012	18.3	0.0	0.0023	17.5	0.0	1.4	1	0	0	1	1	1	1	Peptidase	S24-like
DNA_pol_E_B	PF04042.11	gi|385802385|ref|YP_005838785.1|	-	4.9e-13	48.8	0.0	8e-13	48.1	0.0	1.3	1	0	0	1	1	1	1	DNA	polymerase	alpha/epsilon	subunit	B
Metallophos_2	PF12850.2	gi|385802385|ref|YP_005838785.1|	-	1e-11	44.8	0.1	1.9e-11	44.0	0.1	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|385802385|ref|YP_005838785.1|	-	1.3e-05	24.7	2.1	2.9e-05	23.5	1.4	1.6	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Colicin_M	PF14859.1	gi|385802385|ref|YP_005838785.1|	-	0.019	13.8	0.2	0.031	13.1	0.1	1.2	1	0	0	1	1	1	0	Colicin	M
tRNA_anti-codon	PF01336.20	gi|385802385|ref|YP_005838785.1|	-	0.024	14.4	0.0	0.057	13.2	0.0	1.6	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
AA_kinase	PF00696.23	gi|385802387|ref|YP_005838787.1|	-	6e-48	163.4	5.4	2.1e-47	161.7	1.5	2.1	2	0	0	2	2	2	1	Amino	acid	kinase	family
ACT_7	PF13840.1	gi|385802387|ref|YP_005838787.1|	-	3.6e-15	55.2	1.1	1.5e-07	30.8	0.1	2.7	2	0	0	2	2	2	2	ACT	domain
ACT	PF01842.20	gi|385802387|ref|YP_005838787.1|	-	4.1e-10	38.9	1.4	1.8e-06	27.3	0.1	2.7	2	0	0	2	2	2	2	ACT	domain
ACT_4	PF13291.1	gi|385802387|ref|YP_005838787.1|	-	6.5e-05	23.1	0.8	0.27	11.5	0.0	2.7	1	1	2	3	3	3	2	ACT	domain
ACT_6	PF13740.1	gi|385802387|ref|YP_005838787.1|	-	0.055	13.1	0.5	0.94	9.2	0.1	2.6	2	1	0	2	2	2	0	ACT	domain
IMP_cyclohyd	PF07826.6	gi|385802388|ref|YP_005838788.1|	-	1.7e-60	203.8	0.2	2e-60	203.6	0.1	1.0	1	0	0	1	1	1	1	IMP	cyclohydrolase-like	protein
CGI-121	PF08617.5	gi|385802389|ref|YP_005838789.1|	-	1e-19	70.8	0.0	1.1e-19	70.6	0.0	1.0	1	0	0	1	1	1	1	Kinase	binding	protein	CGI-121
NodS	PF05401.6	gi|385802389|ref|YP_005838789.1|	-	0.0039	16.5	0.0	0.0059	16.0	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
DEAD	PF00270.24	gi|385802390|ref|YP_005838790.1|	-	3.1e-24	85.3	0.0	6.2e-24	84.3	0.0	1.5	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
HHH_5	PF14520.1	gi|385802390|ref|YP_005838790.1|	-	2.5e-06	27.5	1.9	6.6e-06	26.1	0.6	2.3	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
Helicase_C	PF00271.26	gi|385802390|ref|YP_005838790.1|	-	1.5e-05	24.7	0.0	3.8e-05	23.4	0.0	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DNA_pol_lambd_f	PF10391.4	gi|385802390|ref|YP_005838790.1|	-	0.00087	18.7	0.0	0.0021	17.5	0.0	1.6	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
HHH	PF00633.18	gi|385802390|ref|YP_005838790.1|	-	0.014	15.0	0.0	0.33	10.7	0.0	2.8	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
IMS_HHH	PF11798.3	gi|385802390|ref|YP_005838790.1|	-	0.051	13.6	0.1	0.21	11.6	0.0	2.1	2	0	0	2	2	2	0	IMS	family	HHH	motif
DUF897	PF05982.7	gi|385802392|ref|YP_005838792.1|	-	0.27	9.9	2.8	0.3	9.8	2.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF897)
CytB6-F_Fe-S	PF08802.5	gi|385802392|ref|YP_005838792.1|	-	7.7	6.6	6.1	2.2	8.3	1.6	1.9	1	1	1	2	2	2	0	Cytochrome	B6-F	complex	Fe-S	subunit
AAA	PF00004.24	gi|385802393|ref|YP_005838793.1|	-	8.3e-61	203.9	0.0	2.6e-46	157.0	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|385802393|ref|YP_005838793.1|	-	4.2e-12	45.9	0.0	1.2e-07	31.5	0.0	2.9	2	1	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.1	gi|385802393|ref|YP_005838793.1|	-	1.9e-10	41.0	0.2	0.001	19.1	0.0	3.7	2	2	1	3	3	3	2	AAA	domain
AAA_2	PF07724.9	gi|385802393|ref|YP_005838793.1|	-	3.5e-10	40.0	0.0	9.5e-05	22.3	0.0	2.5	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
CDC48_2	PF02933.12	gi|385802393|ref|YP_005838793.1|	-	2.1e-08	33.6	0.0	5.2e-08	32.4	0.0	1.7	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_16	PF13191.1	gi|385802393|ref|YP_005838793.1|	-	3.2e-08	33.7	4.2	0.0017	18.3	0.3	3.7	2	2	0	2	2	2	2	AAA	ATPase	domain
NACHT	PF05729.7	gi|385802393|ref|YP_005838793.1|	-	1e-07	31.7	2.5	0.05	13.2	0.6	3.9	3	1	0	3	3	3	2	NACHT	domain
AAA_17	PF13207.1	gi|385802393|ref|YP_005838793.1|	-	7.5e-07	29.9	0.0	0.0016	19.2	0.0	2.8	2	1	0	2	2	2	1	AAA	domain
RuvB_N	PF05496.7	gi|385802393|ref|YP_005838793.1|	-	8.8e-07	28.2	0.0	0.00014	20.9	0.0	2.8	3	0	0	3	3	3	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_14	PF13173.1	gi|385802393|ref|YP_005838793.1|	-	1.2e-06	28.4	0.0	0.0033	17.3	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.12	gi|385802393|ref|YP_005838793.1|	-	2.3e-06	27.1	0.0	0.0095	15.3	0.0	2.3	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_19	PF13245.1	gi|385802393|ref|YP_005838793.1|	-	2.9e-06	26.9	0.8	0.0059	16.3	0.0	3.1	3	0	0	3	3	2	2	Part	of	AAA	domain
Zeta_toxin	PF06414.7	gi|385802393|ref|YP_005838793.1|	-	4e-06	26.0	0.0	0.0022	17.1	0.0	2.5	2	0	0	2	2	2	1	Zeta	toxin
AAA_3	PF07726.6	gi|385802393|ref|YP_005838793.1|	-	9.7e-06	25.2	0.0	0.096	12.2	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF815	PF05673.8	gi|385802393|ref|YP_005838793.1|	-	1.3e-05	24.3	0.0	0.012	14.5	0.0	2.2	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
AAA_33	PF13671.1	gi|385802393|ref|YP_005838793.1|	-	1.4e-05	25.0	2.5	0.0015	18.4	0.0	2.9	2	2	0	2	2	2	1	AAA	domain
Bac_DnaA	PF00308.13	gi|385802393|ref|YP_005838793.1|	-	5.2e-05	23.0	0.0	0.015	14.9	0.0	2.6	3	0	0	3	3	2	1	Bacterial	dnaA	protein
Sigma54_activat	PF00158.21	gi|385802393|ref|YP_005838793.1|	-	5.2e-05	22.7	0.0	0.11	11.9	0.0	2.4	2	0	0	2	2	2	2	Sigma-54	interaction	domain
AAA_30	PF13604.1	gi|385802393|ref|YP_005838793.1|	-	0.00013	21.6	0.5	0.42	10.1	0.1	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_25	PF13481.1	gi|385802393|ref|YP_005838793.1|	-	0.0002	20.8	3.0	0.099	12.0	0.1	3.5	2	2	1	3	3	3	1	AAA	domain
AAA_24	PF13479.1	gi|385802393|ref|YP_005838793.1|	-	0.00021	20.9	0.2	0.022	14.3	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
Mg_chelatase	PF01078.16	gi|385802393|ref|YP_005838793.1|	-	0.00071	18.8	0.1	0.0067	15.6	0.0	2.1	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
RNA_helicase	PF00910.17	gi|385802393|ref|YP_005838793.1|	-	0.00091	19.3	0.0	0.3	11.2	0.0	2.9	3	0	0	3	3	2	1	RNA	helicase
AAA_28	PF13521.1	gi|385802393|ref|YP_005838793.1|	-	0.0012	18.8	0.0	0.015	15.2	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
UPF0079	PF02367.12	gi|385802393|ref|YP_005838793.1|	-	0.0017	17.9	0.0	1.2	8.7	0.0	2.8	3	0	0	3	3	2	1	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_18	PF13238.1	gi|385802393|ref|YP_005838793.1|	-	0.0018	18.5	0.0	0.39	11.0	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
ABC_tran	PF00005.22	gi|385802393|ref|YP_005838793.1|	-	0.0044	17.3	0.1	2.2	8.5	0.0	2.9	2	1	0	2	2	2	1	ABC	transporter
DAP3	PF10236.4	gi|385802393|ref|YP_005838793.1|	-	0.0056	15.6	0.0	1.6	7.5	0.0	2.3	2	0	0	2	2	2	1	Mitochondrial	ribosomal	death-associated	protein	3
TIP49	PF06068.8	gi|385802393|ref|YP_005838793.1|	-	0.01	14.5	0.0	0.11	11.2	0.0	2.1	2	0	0	2	2	2	0	TIP49	C-terminus
KaiC	PF06745.8	gi|385802393|ref|YP_005838793.1|	-	0.017	14.2	1.3	2.9	6.9	0.0	3.4	2	1	1	3	3	3	0	KaiC
Sigma54_activ_2	PF14532.1	gi|385802393|ref|YP_005838793.1|	-	0.022	14.8	0.0	0.31	11.0	0.0	2.2	2	0	0	2	2	2	0	Sigma-54	interaction	domain
Arch_ATPase	PF01637.13	gi|385802393|ref|YP_005838793.1|	-	0.029	14.0	0.0	4.2	6.9	0.0	2.7	2	2	0	2	2	2	0	Archaeal	ATPase
DUF258	PF03193.11	gi|385802393|ref|YP_005838793.1|	-	0.038	13.1	0.0	0.8	8.8	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
KAP_NTPase	PF07693.9	gi|385802393|ref|YP_005838793.1|	-	0.039	12.9	0.0	5.5	5.8	0.0	2.9	2	1	0	3	3	3	0	KAP	family	P-loop	domain
AAA_29	PF13555.1	gi|385802393|ref|YP_005838793.1|	-	0.043	13.3	0.1	6.9	6.2	0.0	2.5	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
PhoH	PF02562.11	gi|385802393|ref|YP_005838793.1|	-	0.051	12.8	0.2	0.62	9.2	0.1	2.4	2	0	0	2	2	2	0	PhoH-like	protein
Hpr_kinase_C	PF07475.7	gi|385802393|ref|YP_005838793.1|	-	0.053	12.8	0.0	1.4	8.2	0.0	2.3	2	0	0	2	2	2	0	HPr	Serine	kinase	C-terminal	domain
NTPase_1	PF03266.10	gi|385802393|ref|YP_005838793.1|	-	0.061	13.0	0.0	2.1	8.0	0.0	2.4	2	0	0	2	2	2	0	NTPase
Elong_Iki1	PF10483.4	gi|385802393|ref|YP_005838793.1|	-	0.063	12.6	0.3	0.34	10.2	0.2	1.9	1	1	0	1	1	1	0	Elongator	subunit	Iki1
AFG1_ATPase	PF03969.11	gi|385802393|ref|YP_005838793.1|	-	0.12	11.1	0.0	7.6	5.2	0.0	2.4	2	0	0	2	2	2	0	AFG1-like	ATPase
Parvo_NS1	PF01057.12	gi|385802393|ref|YP_005838793.1|	-	0.13	11.0	0.0	0.22	10.3	0.0	1.2	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
NB-ARC	PF00931.17	gi|385802393|ref|YP_005838793.1|	-	0.15	10.8	0.0	1.4	7.6	0.0	2.0	2	0	0	2	2	2	0	NB-ARC	domain
OrfB_IS605	PF01385.14	gi|385802394|ref|YP_005838794.1|	-	2.4e-47	161.2	0.0	3.2e-47	160.8	0.0	1.2	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|385802394|ref|YP_005838794.1|	-	2.1e-21	75.3	1.5	2.1e-21	75.3	1.0	2.3	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.7	gi|385802394|ref|YP_005838794.1|	-	0.017	14.4	3.9	0.022	14.0	1.6	2.1	2	0	0	2	2	2	0	TFIIB	zinc-binding
DUF3791	PF12668.2	gi|385802394|ref|YP_005838794.1|	-	0.11	12.1	0.1	0.32	10.6	0.0	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3791)
C1_2	PF03107.11	gi|385802394|ref|YP_005838794.1|	-	0.22	11.6	3.7	0.65	10.1	2.6	1.8	1	0	0	1	1	1	0	C1	domain
A2L_zn_ribbon	PF08792.5	gi|385802394|ref|YP_005838794.1|	-	1.2	8.6	7.1	0.28	10.6	2.4	1.8	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
RRN7	PF11781.3	gi|385802394|ref|YP_005838794.1|	-	1.4	8.5	5.8	1.5	8.3	2.9	1.9	2	0	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
DUF897	PF05982.7	gi|385802395|ref|YP_005838795.1|	-	0.011	14.5	0.5	0.012	14.4	0.4	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF897)
Bac_rhodopsin	PF01036.13	gi|385802396|ref|YP_005838796.1|	-	2.6e-66	223.1	20.4	3e-66	222.9	14.1	1.0	1	0	0	1	1	1	1	Bacteriorhodopsin-like	protein
DUF4260	PF14079.1	gi|385802396|ref|YP_005838796.1|	-	0.87	9.4	7.0	0.2	11.4	1.3	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4260)
TF_Zn_Ribbon	PF08271.7	gi|385802397|ref|YP_005838797.1|	-	0.00054	19.2	0.4	0.028	13.7	0.3	2.5	1	1	1	2	2	2	2	TFIIB	zinc-binding
Fib_alpha	PF08702.5	gi|385802397|ref|YP_005838797.1|	-	0.0023	18.0	0.6	0.003	17.6	0.4	1.1	1	0	0	1	1	1	1	Fibrinogen	alpha/beta	chain	family
SlyX	PF04102.7	gi|385802397|ref|YP_005838797.1|	-	0.0063	16.8	0.1	0.011	16.0	0.1	1.3	1	0	0	1	1	1	1	SlyX
Zn-ribbon_8	PF09723.5	gi|385802397|ref|YP_005838797.1|	-	0.015	15.2	1.6	1.8	8.5	0.1	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
ADK_lid	PF05191.9	gi|385802397|ref|YP_005838797.1|	-	0.019	14.6	3.2	0.74	9.5	0.2	2.3	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
C1_1	PF00130.17	gi|385802397|ref|YP_005838797.1|	-	0.02	14.6	0.2	0.027	14.2	0.1	1.2	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DivIC	PF04977.10	gi|385802397|ref|YP_005838797.1|	-	0.046	13.2	0.6	0.071	12.6	0.4	1.2	1	0	0	1	1	1	0	Septum	formation	initiator
Med9	PF07544.8	gi|385802397|ref|YP_005838797.1|	-	0.047	13.4	0.6	0.092	12.4	0.4	1.5	1	0	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
zinc_ribbon_5	PF13719.1	gi|385802397|ref|YP_005838797.1|	-	0.21	11.2	0.3	0.21	11.2	0.2	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C2H2	PF00096.21	gi|385802397|ref|YP_005838797.1|	-	0.25	11.7	2.5	2.7	8.5	0.2	2.2	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
UPF0547	PF10571.4	gi|385802397|ref|YP_005838797.1|	-	0.27	10.9	2.5	0.56	9.9	1.8	1.5	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
zinc_ribbon_4	PF13717.1	gi|385802397|ref|YP_005838797.1|	-	0.28	10.8	0.4	0.28	10.8	0.3	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
Transposase_22	PF02994.9	gi|385802397|ref|YP_005838797.1|	-	0.35	9.3	4.3	0.41	9.0	3.0	1.0	1	0	0	1	1	1	0	L1	transposable	element
DUF16	PF01519.11	gi|385802397|ref|YP_005838797.1|	-	0.36	11.0	2.9	0.56	10.4	2.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF16
Mucin	PF01456.12	gi|385802397|ref|YP_005838797.1|	-	0.36	10.5	5.7	0.44	10.3	3.9	1.1	1	0	0	1	1	1	0	Mucin-like	glycoprotein
Adaptin_binding	PF10199.4	gi|385802397|ref|YP_005838797.1|	-	0.58	10.4	5.6	0.75	10.0	3.9	1.1	1	0	0	1	1	1	0	Alpha	and	gamma	adaptin	binding	protein	p34
zf-dskA_traR	PF01258.12	gi|385802397|ref|YP_005838797.1|	-	0.63	9.8	2.6	13	5.6	0.1	2.3	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
DUF35_N	PF12172.3	gi|385802397|ref|YP_005838797.1|	-	0.86	9.5	4.7	3.2	7.7	0.2	2.3	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Pox_RNA_Pol_19	PF05320.7	gi|385802397|ref|YP_005838797.1|	-	1.3	8.7	5.5	1.7	8.3	3.8	1.1	1	0	0	1	1	1	0	Poxvirus	DNA-directed	RNA	polymerase	19	kDa	subunit
NESP55	PF06390.7	gi|385802397|ref|YP_005838797.1|	-	2.1	7.6	11.1	2.5	7.4	7.7	1.1	1	0	0	1	1	1	0	Neuroendocrine-specific	golgi	protein	P55	(NESP55)
Fer4_15	PF13459.1	gi|385802398|ref|YP_005838798.1|	-	9.1e-15	54.9	2.5	1.1e-14	54.7	1.7	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.1	gi|385802398|ref|YP_005838798.1|	-	0.00047	20.4	1.9	0.0012	19.1	1.3	1.7	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4	PF00037.22	gi|385802398|ref|YP_005838798.1|	-	0.025	14.1	1.1	0.38	10.4	0.2	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_19	PF06902.6	gi|385802398|ref|YP_005838798.1|	-	0.044	13.5	0.2	0.24	11.2	0.2	2.0	1	1	0	1	1	1	0	Divergent	4Fe-4S	mono-cluster
Fer4_10	PF13237.1	gi|385802398|ref|YP_005838798.1|	-	0.086	12.6	0.0	0.46	10.3	0.0	1.9	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Bac_rhodopsin	PF01036.13	gi|385802399|ref|YP_005838799.1|	-	4.9e-62	209.1	19.7	5.5e-62	208.9	13.7	1.0	1	0	0	1	1	1	1	Bacteriorhodopsin-like	protein
BCD	PF15461.1	gi|385802401|ref|YP_005838801.1|	-	7.7e-78	261.4	23.4	1.1e-77	260.9	16.3	1.2	1	0	0	1	1	1	1	Beta-carotene	15,15'-dioxygenase
KASH	PF10541.4	gi|385802401|ref|YP_005838801.1|	-	0.021	14.6	2.0	0.44	10.4	0.1	2.8	3	0	0	3	3	3	0	Nuclear	envelope	localisation	domain
ERCC4	PF02732.10	gi|385802402|ref|YP_005838802.1|	-	1.9e-23	82.8	0.1	7.9e-23	80.7	0.0	2.2	2	0	0	2	2	2	1	ERCC4	domain
Helicase_C	PF00271.26	gi|385802402|ref|YP_005838802.1|	-	1.7e-18	66.2	0.0	5.7e-18	64.5	0.0	2.0	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.24	gi|385802402|ref|YP_005838802.1|	-	1.9e-17	63.2	0.1	9.4e-17	61.0	0.0	2.2	3	0	0	3	3	3	1	DEAD/DEAH	box	helicase
ResIII	PF04851.10	gi|385802402|ref|YP_005838802.1|	-	2.4e-11	43.7	0.6	7.7e-11	42.1	0.0	2.1	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
HHH_5	PF14520.1	gi|385802402|ref|YP_005838802.1|	-	5.4e-10	39.3	0.1	2.1e-09	37.4	0.0	2.1	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
HHH_2	PF12826.2	gi|385802402|ref|YP_005838802.1|	-	7.8e-10	38.4	0.3	5e-09	35.9	0.1	2.4	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH	PF00633.18	gi|385802402|ref|YP_005838802.1|	-	1.6e-06	27.4	0.1	0.00059	19.3	0.1	2.8	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
5_3_exonuc	PF01367.15	gi|385802402|ref|YP_005838802.1|	-	0.012	15.7	0.0	0.089	13.0	0.0	2.6	2	0	0	2	2	2	0	5'-3'	exonuclease,	C-terminal	SAM	fold
Arc_PepC_II	PF06847.6	gi|385802403|ref|YP_005838803.1|	-	1.8e-19	69.9	0.0	1.5e-18	67.0	0.0	2.2	2	0	0	2	2	2	1	Archaeal	Peptidase	A24	C-terminus	Type	II
Peptidase_A24	PF01478.13	gi|385802403|ref|YP_005838803.1|	-	1.4e-08	34.7	10.3	1.4e-08	34.7	7.1	1.9	2	0	0	2	2	2	1	Type	IV	leader	peptidase	family
PRA-CH	PF01502.13	gi|385802404|ref|YP_005838804.1|	-	4.9e-37	125.4	0.3	7.1e-37	124.8	0.2	1.2	1	0	0	1	1	1	1	Phosphoribosyl-AMP	cyclohydrolase
Halogen_Hydrol	PF10112.4	gi|385802405|ref|YP_005838805.1|	-	0.079	12.3	0.1	0.18	11.1	0.1	1.5	1	0	0	1	1	1	0	5-bromo-4-chloroindolyl	phosphate	hydrolysis	protein
PGM_PMM_I	PF02878.11	gi|385802406|ref|YP_005838806.1|	-	1.6e-35	121.5	0.0	3.2e-35	120.6	0.0	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.11	gi|385802406|ref|YP_005838806.1|	-	5.4e-26	90.9	0.0	1.1e-25	89.9	0.0	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_IV	PF00408.15	gi|385802406|ref|YP_005838806.1|	-	1.9e-14	53.3	0.1	5.8e-14	51.8	0.0	1.8	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
PGM_PMM_III	PF02880.11	gi|385802406|ref|YP_005838806.1|	-	7.7e-11	42.0	0.0	1.7e-10	40.9	0.0	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
His_biosynth	PF00977.16	gi|385802407|ref|YP_005838807.1|	-	9.1e-75	250.8	4.6	1e-74	250.6	3.2	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Dus	PF01207.12	gi|385802407|ref|YP_005838807.1|	-	5.8e-12	45.0	0.6	3.2e-06	26.1	0.0	2.3	2	1	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
NMO	PF03060.10	gi|385802407|ref|YP_005838807.1|	-	1.1e-09	37.9	7.1	4.7e-07	29.2	0.6	2.1	2	0	0	2	2	2	2	Nitronate	monooxygenase
ThiG	PF05690.9	gi|385802407|ref|YP_005838807.1|	-	6.5e-08	31.9	10.2	9.8e-06	24.8	0.9	2.1	1	1	1	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
DHO_dh	PF01180.16	gi|385802407|ref|YP_005838807.1|	-	9.4e-08	31.3	1.5	9.8e-05	21.4	0.3	2.1	2	0	0	2	2	2	2	Dihydroorotate	dehydrogenase
PcrB	PF01884.12	gi|385802407|ref|YP_005838807.1|	-	4.9e-07	29.2	2.1	0.011	14.9	0.1	2.3	2	0	0	2	2	2	2	PcrB	family
IGPS	PF00218.16	gi|385802407|ref|YP_005838807.1|	-	2.7e-05	23.3	0.3	0.021	13.9	0.0	2.5	2	1	1	3	3	3	2	Indole-3-glycerol	phosphate	synthase
TMP-TENI	PF02581.12	gi|385802407|ref|YP_005838807.1|	-	0.0011	18.1	4.0	0.17	10.9	0.4	2.2	2	0	0	2	2	2	2	Thiamine	monophosphate	synthase/TENI
NanE	PF04131.9	gi|385802407|ref|YP_005838807.1|	-	0.021	13.7	0.9	5	6.0	0.1	2.4	2	1	0	2	2	2	0	Putative	N-acetylmannosamine-6-phosphate	epimerase
IMPDH	PF00478.20	gi|385802407|ref|YP_005838807.1|	-	0.057	12.3	3.5	1.4	7.6	0.3	2.2	2	0	0	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
G3P_antiterm	PF04309.7	gi|385802407|ref|YP_005838807.1|	-	0.07	12.1	1.1	0.42	9.6	0.1	2.1	2	0	0	2	2	2	0	Glycerol-3-phosphate	responsive	antiterminator
Ribul_P_3_epim	PF00834.14	gi|385802407|ref|YP_005838807.1|	-	0.11	11.6	3.1	2.3	7.2	0.2	2.4	2	1	0	2	2	2	0	Ribulose-phosphate	3	epimerase	family
FMN_dh	PF01070.13	gi|385802407|ref|YP_005838807.1|	-	0.12	11.2	10.8	0.87	8.3	1.3	2.1	2	0	0	2	2	2	0	FMN-dependent	dehydrogenase
TPT	PF03151.11	gi|385802407|ref|YP_005838807.1|	-	0.17	11.5	0.1	0.25	11.0	0.0	1.2	1	0	0	1	1	1	0	Triose-phosphate	Transporter	family
IGPD	PF00475.13	gi|385802408|ref|YP_005838808.1|	-	8.1e-59	197.6	1.0	1.1e-58	197.2	0.7	1.1	1	0	0	1	1	1	1	Imidazoleglycerol-phosphate	dehydratase
ACT	PF01842.20	gi|385802409|ref|YP_005838809.1|	-	1.6e-06	27.4	1.3	3.5e-06	26.3	0.2	2.2	2	1	0	2	2	2	1	ACT	domain
ACT_7	PF13840.1	gi|385802409|ref|YP_005838809.1|	-	0.00045	19.6	0.1	0.0013	18.2	0.0	1.7	2	0	0	2	2	2	1	ACT	domain
ACT_4	PF13291.1	gi|385802409|ref|YP_005838809.1|	-	0.039	14.3	0.4	0.75	10.1	0.0	2.3	2	0	0	2	2	2	0	ACT	domain
ACT_6	PF13740.1	gi|385802409|ref|YP_005838809.1|	-	0.12	12.1	0.0	0.25	11.0	0.0	1.5	1	0	0	1	1	1	0	ACT	domain
UPF0029	PF01205.14	gi|385802410|ref|YP_005838810.1|	-	5.8e-33	112.8	0.0	1.2e-32	111.9	0.0	1.5	2	0	0	2	2	2	1	Uncharacterized	protein	family	UPF0029
DUF1949	PF09186.6	gi|385802410|ref|YP_005838810.1|	-	8.5e-11	41.2	0.4	3.6e-10	39.3	0.0	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1949)
EFG_C	PF00679.19	gi|385802410|ref|YP_005838810.1|	-	0.0015	18.3	0.1	0.0053	16.5	0.0	1.9	2	0	0	2	2	2	1	Elongation	factor	G	C-terminus
YscJ_FliF	PF01514.12	gi|385802410|ref|YP_005838810.1|	-	0.041	13.0	0.0	1.3	8.1	0.0	2.1	2	0	0	2	2	2	0	Secretory	protein	of	YscJ/FliF	family
UPRTase	PF14681.1	gi|385802411|ref|YP_005838811.1|	-	1.2e-54	184.6	0.0	1.4e-54	184.4	0.0	1.0	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Pribosyltran	PF00156.22	gi|385802411|ref|YP_005838811.1|	-	1.2e-06	28.2	0.1	2e-06	27.5	0.1	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
CbtB	PF09489.5	gi|385802412|ref|YP_005838812.1|	-	0.29	11.0	1.9	0.3	11.0	0.5	1.6	1	1	1	2	2	2	0	Probable	cobalt	transporter	subunit	(CbtB)
DUF4342	PF14242.1	gi|385802413|ref|YP_005838813.1|	-	1	9.2	3.8	3.7	7.3	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4342)
TcpE	PF12648.2	gi|385802413|ref|YP_005838813.1|	-	2.3	8.3	4.3	5.6	7.1	0.3	2.1	2	0	0	2	2	2	0	TcpE	family
DUF2062	PF09835.4	gi|385802413|ref|YP_005838813.1|	-	2.9	7.4	7.1	9.6	5.8	0.2	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2062)
zf-RING_3	PF14369.1	gi|385802414|ref|YP_005838814.1|	-	8.6e-06	25.6	4.3	8.6e-06	25.6	3.0	1.5	1	1	0	1	1	1	1	zinc-finger
NOB1_Zn_bind	PF08772.6	gi|385802414|ref|YP_005838814.1|	-	0.0018	18.0	0.3	0.0024	17.6	0.2	1.2	1	0	0	1	1	1	1	Nin	one	binding	(NOB1)	Zn-ribbon	like
HypA	PF01155.14	gi|385802414|ref|YP_005838814.1|	-	0.0084	15.7	0.5	0.011	15.3	0.4	1.2	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
DZR	PF12773.2	gi|385802414|ref|YP_005838814.1|	-	0.024	14.4	2.2	0.032	14.0	1.5	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-C3HC4_3	PF13920.1	gi|385802414|ref|YP_005838814.1|	-	0.052	13.2	0.6	0.081	12.6	0.4	1.3	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
Zn_Tnp_IS1595	PF12760.2	gi|385802414|ref|YP_005838814.1|	-	0.055	13.2	0.7	8.2	6.3	0.0	2.2	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|385802414|ref|YP_005838814.1|	-	0.056	13.3	2.6	0.1	12.5	1.8	1.5	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-CHY	PF05495.7	gi|385802414|ref|YP_005838814.1|	-	0.06	13.5	1.6	0.063	13.4	1.1	1.2	1	0	0	1	1	1	0	CHY	zinc	finger
PhnA_Zn_Ribbon	PF08274.7	gi|385802414|ref|YP_005838814.1|	-	0.13	12.1	0.6	0.13	12.1	0.4	1.9	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
DUF2197	PF09963.4	gi|385802414|ref|YP_005838814.1|	-	0.15	12.0	1.4	0.3	11.0	0.1	1.9	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2197)
RNHCP	PF12647.2	gi|385802414|ref|YP_005838814.1|	-	0.15	11.8	3.5	0.18	11.6	2.4	1.2	1	0	0	1	1	1	0	RNHCP	domain
zinc-ribbons_6	PF07191.7	gi|385802414|ref|YP_005838814.1|	-	0.19	11.5	5.2	3.1	7.6	0.1	2.1	1	1	1	2	2	2	0	zinc-ribbons
TFIIS_C	PF01096.13	gi|385802414|ref|YP_005838814.1|	-	0.21	11.2	1.8	7.8	6.2	0.1	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
TF_Zn_Ribbon	PF08271.7	gi|385802414|ref|YP_005838814.1|	-	0.61	9.4	6.1	6.1	6.2	0.0	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-C4_Topoisom	PF01396.14	gi|385802414|ref|YP_005838814.1|	-	2	7.9	5.4	0.35	10.4	1.0	1.8	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
cobW	PF02492.14	gi|385802415|ref|YP_005838815.1|	-	7.5e-51	172.0	0.7	1e-50	171.6	0.5	1.2	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
CobW_C	PF07683.9	gi|385802415|ref|YP_005838815.1|	-	1.2e-23	82.6	0.0	2.7e-23	81.4	0.0	1.6	1	0	0	1	1	1	1	Cobalamin	synthesis	protein	cobW	C-terminal	domain
GTP_EFTU	PF00009.22	gi|385802415|ref|YP_005838815.1|	-	0.0001	21.8	0.7	0.25	10.7	0.1	2.6	2	1	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
T2SE	PF00437.15	gi|385802415|ref|YP_005838815.1|	-	0.0016	17.3	0.3	0.0037	16.1	0.2	1.5	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
TrwB_AAD_bind	PF10412.4	gi|385802415|ref|YP_005838815.1|	-	0.0017	17.0	0.0	0.004	15.8	0.0	1.5	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
ArgK	PF03308.11	gi|385802415|ref|YP_005838815.1|	-	0.0017	17.1	0.5	1.7	7.3	0.0	2.6	3	0	0	3	3	3	2	ArgK	protein
DUF258	PF03193.11	gi|385802415|ref|YP_005838815.1|	-	0.0038	16.4	0.0	0.0082	15.3	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
Zeta_toxin	PF06414.7	gi|385802415|ref|YP_005838815.1|	-	0.0046	16.0	0.0	0.011	14.7	0.0	1.6	1	0	0	1	1	1	1	Zeta	toxin
AAA_16	PF13191.1	gi|385802415|ref|YP_005838815.1|	-	0.006	16.5	1.0	0.025	14.5	0.7	2.1	1	1	0	1	1	1	1	AAA	ATPase	domain
MMR_HSR1	PF01926.18	gi|385802415|ref|YP_005838815.1|	-	0.0066	16.4	0.5	0.07	13.0	0.3	2.5	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_19	PF13245.1	gi|385802415|ref|YP_005838815.1|	-	0.0088	15.7	0.1	0.024	14.3	0.1	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_29	PF13555.1	gi|385802415|ref|YP_005838815.1|	-	0.013	14.9	0.4	0.059	12.9	0.2	2.1	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.1	gi|385802415|ref|YP_005838815.1|	-	0.015	15.4	0.0	0.034	14.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
UPF0079	PF02367.12	gi|385802415|ref|YP_005838815.1|	-	0.019	14.6	0.0	0.049	13.2	0.0	1.7	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_18	PF13238.1	gi|385802415|ref|YP_005838815.1|	-	0.019	15.2	1.0	0.12	12.6	0.0	2.4	2	1	0	2	2	2	0	AAA	domain
AAA_33	PF13671.1	gi|385802415|ref|YP_005838815.1|	-	0.025	14.4	0.0	0.078	12.8	0.0	2.0	1	0	0	1	1	1	0	AAA	domain
AAA_14	PF13173.1	gi|385802415|ref|YP_005838815.1|	-	0.03	14.2	0.0	0.083	12.7	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
MobB	PF03205.9	gi|385802415|ref|YP_005838815.1|	-	0.033	13.8	0.0	0.11	12.1	0.0	2.0	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
SRPRB	PF09439.5	gi|385802415|ref|YP_005838815.1|	-	0.037	13.2	0.2	0.11	11.7	0.0	1.8	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
Arch_ATPase	PF01637.13	gi|385802415|ref|YP_005838815.1|	-	0.038	13.6	0.0	0.064	12.9	0.0	1.3	1	0	0	1	1	1	0	Archaeal	ATPase
AAA_28	PF13521.1	gi|385802415|ref|YP_005838815.1|	-	0.045	13.7	0.2	0.16	11.9	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
Miro	PF08477.8	gi|385802415|ref|YP_005838815.1|	-	0.046	14.2	0.0	0.17	12.3	0.0	2.0	1	0	0	1	1	1	0	Miro-like	protein
ABC_tran	PF00005.22	gi|385802415|ref|YP_005838815.1|	-	0.056	13.7	1.8	0.076	13.3	0.0	2.0	2	1	0	2	2	2	0	ABC	transporter
AAA_10	PF12846.2	gi|385802415|ref|YP_005838815.1|	-	0.07	12.5	0.1	0.099	12.0	0.1	1.5	1	1	0	1	1	1	0	AAA-like	domain
NTPase_1	PF03266.10	gi|385802415|ref|YP_005838815.1|	-	0.071	12.8	0.7	0.27	10.9	0.1	2.0	2	0	0	2	2	2	0	NTPase
NACHT	PF05729.7	gi|385802415|ref|YP_005838815.1|	-	0.11	12.1	0.0	0.34	10.5	0.0	1.8	1	0	0	1	1	1	0	NACHT	domain
AAA_23	PF13476.1	gi|385802415|ref|YP_005838815.1|	-	0.32	11.3	2.0	0.46	10.7	0.2	2.0	2	0	0	2	2	2	0	AAA	domain
SelP_N	PF04592.9	gi|385802415|ref|YP_005838815.1|	-	0.91	8.8	6.1	1.6	8.0	4.2	1.3	1	0	0	1	1	1	0	Selenoprotein	P,	N	terminal	region
Arf	PF00025.16	gi|385802415|ref|YP_005838815.1|	-	1.2	8.3	4.9	7	5.8	0.0	2.9	2	1	0	2	2	2	0	ADP-ribosylation	factor	family
RhoGAP	PF00620.22	gi|385802416|ref|YP_005838816.1|	-	0.11	12.1	0.0	0.11	12.0	0.0	1.2	1	0	0	1	1	1	0	RhoGAP	domain
ArsA_ATPase	PF02374.10	gi|385802417|ref|YP_005838817.1|	-	3.9e-74	249.4	0.0	4.8e-74	249.1	0.0	1.0	1	0	0	1	1	1	1	Anion-transporting	ATPase
CbiA	PF01656.18	gi|385802417|ref|YP_005838817.1|	-	1.4e-11	44.1	0.0	4.2e-11	42.6	0.0	1.7	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|385802417|ref|YP_005838817.1|	-	2.7e-06	27.4	0.0	1.8e-05	24.7	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|385802417|ref|YP_005838817.1|	-	8.7e-05	22.0	0.0	0.0001	21.8	0.0	1.2	1	0	0	1	1	1	1	AAA-like	domain
AAA_25	PF13481.1	gi|385802417|ref|YP_005838817.1|	-	0.034	13.5	3.9	0.046	13.1	1.0	2.4	2	1	0	2	2	2	0	AAA	domain
Fer4_NifH	PF00142.13	gi|385802417|ref|YP_005838817.1|	-	0.055	12.6	0.0	0.12	11.5	0.0	1.6	2	0	0	2	2	2	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_18	PF13238.1	gi|385802417|ref|YP_005838817.1|	-	0.058	13.6	0.7	0.87	9.8	0.0	2.7	3	1	0	3	3	3	0	AAA	domain
AAA_17	PF13207.1	gi|385802417|ref|YP_005838817.1|	-	0.059	14.2	2.2	0.95	10.2	1.2	2.6	1	1	0	1	1	1	0	AAA	domain
AAA_26	PF13500.1	gi|385802417|ref|YP_005838817.1|	-	0.071	12.7	0.2	0.71	9.4	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
KaiC	PF06745.8	gi|385802417|ref|YP_005838817.1|	-	0.096	11.7	0.1	0.14	11.2	0.1	1.5	1	1	0	1	1	1	0	KaiC
SRP54	PF00448.17	gi|385802417|ref|YP_005838817.1|	-	0.11	11.9	0.3	0.47	9.8	0.1	1.9	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
CstA	PF02554.9	gi|385802418|ref|YP_005838818.1|	-	3.3e-127	424.2	23.6	3.3e-127	424.2	16.4	2.0	2	0	0	2	2	2	1	Carbon	starvation	protein	CstA
DUF4161	PF13722.1	gi|385802418|ref|YP_005838818.1|	-	4.6e-31	107.7	1.9	4.6e-31	107.7	1.3	4.0	4	0	0	4	4	4	1	C-terminal	domain	on	CstA	(DUF4161)
Cupin_2	PF07883.6	gi|385802420|ref|YP_005838820.1|	-	4.5e-07	29.2	0.3	1.2e-06	27.8	0.1	1.8	2	0	0	2	2	2	1	Cupin	domain
MannoseP_isomer	PF01050.13	gi|385802420|ref|YP_005838820.1|	-	0.021	14.4	0.0	0.024	14.2	0.0	1.1	1	0	0	1	1	1	0	Mannose-6-phosphate	isomerase
TrmB	PF01978.14	gi|385802423|ref|YP_005838823.1|	-	1.7e-14	53.2	0.0	2.3e-14	52.8	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|385802423|ref|YP_005838823.1|	-	1e-06	28.2	0.2	1.6e-06	27.6	0.1	1.3	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.17	gi|385802423|ref|YP_005838823.1|	-	2.8e-05	23.7	0.0	5.1e-05	22.8	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|385802423|ref|YP_005838823.1|	-	4.2e-05	23.7	0.1	6.7e-05	23.1	0.1	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.5	gi|385802423|ref|YP_005838823.1|	-	0.0014	18.2	0.2	0.0025	17.3	0.1	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TFIIE_alpha	PF02002.12	gi|385802423|ref|YP_005838823.1|	-	0.008	15.6	0.0	0.0095	15.4	0.0	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
Phage_rep_org_N	PF09681.5	gi|385802423|ref|YP_005838823.1|	-	0.013	15.0	0.0	0.024	14.1	0.0	1.5	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
HTH_5	PF01022.15	gi|385802423|ref|YP_005838823.1|	-	0.015	14.9	0.1	0.024	14.2	0.1	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.1	gi|385802423|ref|YP_005838823.1|	-	0.032	13.6	0.0	0.049	13.0	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|385802423|ref|YP_005838823.1|	-	0.058	13.2	0.5	0.1	12.4	0.3	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
GntR	PF00392.16	gi|385802423|ref|YP_005838823.1|	-	0.15	11.5	0.4	0.26	10.7	0.3	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
PALP	PF00291.20	gi|385802424|ref|YP_005838824.1|	-	4.1e-62	210.1	0.4	4.8e-62	209.9	0.3	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
2-Hacid_dh_C	PF02826.14	gi|385802425|ref|YP_005838825.1|	-	2.8e-57	192.7	0.0	4.9e-57	191.9	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.25	gi|385802425|ref|YP_005838825.1|	-	5.2e-34	116.5	0.5	2.4e-33	114.4	0.8	1.7	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
ACT	PF01842.20	gi|385802425|ref|YP_005838825.1|	-	9.2e-05	21.8	0.1	0.00049	19.5	0.1	2.4	1	0	0	1	1	1	1	ACT	domain
NAD_binding_2	PF03446.10	gi|385802425|ref|YP_005838825.1|	-	0.00033	20.5	0.8	0.0055	16.5	0.0	2.8	3	0	0	3	3	3	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
ELFV_dehydrog	PF00208.16	gi|385802425|ref|YP_005838825.1|	-	0.0014	18.2	0.0	0.0041	16.7	0.0	1.7	2	0	0	2	2	2	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
TrkA_N	PF02254.13	gi|385802425|ref|YP_005838825.1|	-	0.0091	15.9	0.0	0.029	14.3	0.0	1.9	1	0	0	1	1	1	1	TrkA-N	domain
UDPG_MGDP_dh_C	PF03720.10	gi|385802425|ref|YP_005838825.1|	-	0.012	15.7	0.0	0.035	14.2	0.0	1.8	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
HAD	PF12710.2	gi|385802426|ref|YP_005838826.1|	-	2.1e-17	63.8	0.4	2.6e-17	63.5	0.3	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|385802426|ref|YP_005838826.1|	-	1.2e-12	47.9	0.5	3.3e-08	33.4	0.0	3.0	2	1	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|385802426|ref|YP_005838826.1|	-	1.3e-12	48.5	0.2	7.2e-08	33.1	0.0	2.1	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.1	gi|385802426|ref|YP_005838826.1|	-	7.9e-06	26.2	0.4	0.00017	21.8	0.1	2.4	2	1	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Put_Phosphatase	PF06888.7	gi|385802426|ref|YP_005838826.1|	-	0.043	12.9	0.0	1.2	8.2	0.0	2.1	2	0	0	2	2	2	0	Putative	Phosphatase
DUF91	PF01939.11	gi|385802427|ref|YP_005838827.1|	-	1.9e-07	30.4	0.0	2.9e-07	29.8	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF91
Auto_anti-p27	PF06677.7	gi|385802427|ref|YP_005838827.1|	-	2.4e-06	27.1	7.5	0.00047	19.8	0.2	3.5	3	0	0	3	3	3	2	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-C4_Topoisom	PF01396.14	gi|385802427|ref|YP_005838827.1|	-	2.6e-06	26.7	5.2	4.8e-06	25.9	0.0	2.4	2	0	0	2	2	2	1	Topoisomerase	DNA	binding	C4	zinc	finger
GFA	PF04828.9	gi|385802427|ref|YP_005838827.1|	-	0.051	13.5	5.1	1.3	9.0	0.1	2.9	3	1	1	4	4	4	0	Glutathione-dependent	formaldehyde-activating	enzyme
zf-ribbon_3	PF13248.1	gi|385802427|ref|YP_005838827.1|	-	0.071	12.3	4.9	0.51	9.6	0.1	2.8	3	0	0	3	3	3	0	zinc-ribbon	domain
Rubredoxin	PF00301.15	gi|385802427|ref|YP_005838827.1|	-	0.13	12.1	5.8	0.93	9.4	4.0	2.2	1	1	0	1	1	1	0	Rubredoxin
zf-Mss51	PF13824.1	gi|385802427|ref|YP_005838827.1|	-	0.46	10.3	4.9	2.6	7.9	0.0	3.3	4	0	0	4	4	4	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
A2L_zn_ribbon	PF08792.5	gi|385802427|ref|YP_005838827.1|	-	0.74	9.3	6.3	4.7	6.7	0.0	3.2	3	0	0	3	3	3	0	A2L	zinc	ribbon	domain
zf-IS66	PF13005.2	gi|385802427|ref|YP_005838827.1|	-	0.93	9.5	7.0	1.4	8.9	0.1	3.3	3	0	0	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
Zn_ribbon_recom	PF13408.1	gi|385802427|ref|YP_005838827.1|	-	2.9	8.2	5.4	0.62	10.3	0.4	2.2	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
Sec63	PF02889.11	gi|385802428|ref|YP_005838828.1|	-	5.2e-29	101.4	0.0	7e-29	101.0	0.0	1.2	1	0	0	1	1	1	1	Sec63	Brl	domain
DEAD	PF00270.24	gi|385802428|ref|YP_005838828.1|	-	1.2e-26	93.2	0.0	5.4e-26	91.0	0.0	2.0	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|385802428|ref|YP_005838828.1|	-	1.6e-09	37.5	0.0	6.7e-09	35.4	0.0	2.0	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|385802428|ref|YP_005838828.1|	-	2.5e-07	30.6	0.0	4.3e-07	29.9	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
HHH_5	PF14520.1	gi|385802428|ref|YP_005838828.1|	-	5e-06	26.5	0.4	2.1e-05	24.5	0.3	2.2	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
DNA_pol_lambd_f	PF10391.4	gi|385802428|ref|YP_005838828.1|	-	0.0081	15.6	0.0	0.025	14.1	0.0	1.9	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
INCENP_N	PF12178.3	gi|385802428|ref|YP_005838828.1|	-	0.019	14.4	0.1	0.2	11.2	0.0	2.4	2	0	0	2	2	2	0	Chromosome	passenger	complex	(CPC)	protein	INCENP	N	terminal
tRNA_int_endo	PF01974.12	gi|385802429|ref|YP_005838829.1|	-	2.1e-30	104.3	0.0	3.9e-22	77.8	0.0	2.8	2	1	0	2	2	2	2	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
tRNA_int_endo_N	PF02778.9	gi|385802429|ref|YP_005838829.1|	-	7.7e-28	95.8	0.0	8.5e-13	47.6	0.0	2.5	2	0	0	2	2	2	2	tRNA	intron	endonuclease,	N-terminal	domain
Peptidase_S32	PF05579.8	gi|385802429|ref|YP_005838829.1|	-	0.0025	16.8	0.1	0.0037	16.2	0.0	1.2	1	0	0	1	1	1	1	Equine	arteritis	virus	serine	endopeptidase	S32
tRNA-synt_1b	PF00579.20	gi|385802430|ref|YP_005838830.1|	-	1e-41	142.9	0.0	1.8e-24	86.3	0.0	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(W	and	Y)
tRNA-synt_2d	PF01409.15	gi|385802431|ref|YP_005838831.1|	-	6.1e-80	267.9	0.0	7.8e-80	267.6	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
HTH_27	PF13463.1	gi|385802431|ref|YP_005838831.1|	-	1.1e-05	25.5	2.5	0.005	17.1	0.2	2.8	2	0	0	2	2	2	2	Winged	helix	DNA-binding	domain
tRNA-synt_2	PF00152.15	gi|385802431|ref|YP_005838831.1|	-	2.9e-05	23.0	0.7	0.012	14.4	0.1	2.6	3	0	0	3	3	3	2	tRNA	synthetases	class	II	(D,	K	and	N)
HTH_45	PF14947.1	gi|385802431|ref|YP_005838831.1|	-	0.0031	17.3	0.1	0.047	13.5	0.0	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix
Rrf2	PF02082.15	gi|385802431|ref|YP_005838831.1|	-	0.015	15.3	0.0	0.041	14.0	0.0	1.7	1	0	0	1	1	1	0	Transcriptional	regulator
MarR	PF01047.17	gi|385802431|ref|YP_005838831.1|	-	0.019	14.6	0.0	0.059	13.0	0.0	1.9	1	0	0	1	1	1	0	MarR	family
DUF4364	PF14277.1	gi|385802431|ref|YP_005838831.1|	-	0.031	13.9	0.3	0.36	10.4	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4364)
B5	PF03484.10	gi|385802432|ref|YP_005838832.1|	-	1e-14	54.0	0.1	5.9e-13	48.4	0.0	2.7	2	0	0	2	2	2	1	tRNA	synthetase	B5	domain
B3_4	PF03483.12	gi|385802432|ref|YP_005838832.1|	-	9.7e-11	41.4	0.0	1.2e-09	37.8	0.0	2.1	1	1	0	1	1	1	1	B3/4	domain
tRNA-synt_2d	PF01409.15	gi|385802432|ref|YP_005838832.1|	-	0.016	14.4	0.0	0.028	13.6	0.0	1.3	1	0	0	1	1	1	0	tRNA	synthetases	class	II	core	domain	(F)
tRNA-synt_1	PF00133.17	gi|385802433|ref|YP_005838833.1|	-	4.4e-122	408.1	0.0	4.1e-121	404.8	0.0	1.9	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.8	gi|385802433|ref|YP_005838833.1|	-	5.3e-28	97.6	0.0	1.3e-27	96.4	0.0	1.6	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.6	gi|385802433|ref|YP_005838833.1|	-	1.3e-25	89.9	1.1	5.4e-13	48.3	0.1	3.5	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1_2	PF13603.1	gi|385802433|ref|YP_005838833.1|	-	4e-05	22.9	0.0	0.00013	21.3	0.0	1.8	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1e	PF01406.14	gi|385802433|ref|YP_005838833.1|	-	4.3e-05	22.8	0.0	0.021	13.9	0.0	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.13	gi|385802433|ref|YP_005838833.1|	-	0.00023	19.9	0.1	0.0023	16.6	0.0	2.3	2	1	0	2	2	2	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1d	PF00750.14	gi|385802433|ref|YP_005838833.1|	-	0.053	12.3	0.0	8	5.1	0.0	2.3	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(R)
DNA_ligase_ZBD	PF03119.11	gi|385802433|ref|YP_005838833.1|	-	0.14	11.9	1.8	6.3	6.5	0.0	2.6	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
DHO_dh	PF01180.16	gi|385802434|ref|YP_005838834.1|	-	3.9e-82	275.5	0.0	4.5e-82	275.3	0.0	1.0	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
NMO	PF03060.10	gi|385802434|ref|YP_005838834.1|	-	1.2e-07	31.2	1.3	1.5e-06	27.5	0.9	2.1	1	1	0	1	1	1	1	Nitronate	monooxygenase
HisG_C	PF08029.6	gi|385802434|ref|YP_005838834.1|	-	0.11	12.4	0.1	0.55	10.1	0.1	2.1	1	1	0	1	1	1	0	HisG,	C-terminal	domain
Pantoate_transf	PF02548.10	gi|385802434|ref|YP_005838834.1|	-	0.16	11.0	0.4	0.66	9.0	0.1	1.9	2	0	0	2	2	2	0	Ketopantoate	hydroxymethyltransferase
SymE_toxin	PF08845.5	gi|385802435|ref|YP_005838835.1|	-	0.0016	18.2	0.0	0.0017	18.1	0.0	1.1	1	0	0	1	1	1	1	Toxin	SymE,	type	I	toxin-antitoxin	system
Antitoxin-MazE	PF04014.13	gi|385802435|ref|YP_005838835.1|	-	0.024	14.3	0.1	0.037	13.7	0.1	1.4	1	0	0	1	1	1	0	Antidote-toxin	recognition	MazE
MC1	PF05854.6	gi|385802436|ref|YP_005838836.1|	-	1e-30	105.5	0.2	1.2e-30	105.2	0.1	1.1	1	0	0	1	1	1	1	Non-histone	chromosomal	protein	MC1
SQS_PSY	PF00494.14	gi|385802437|ref|YP_005838837.1|	-	0.012	14.8	0.1	3.4	6.8	0.0	2.0	1	1	1	2	2	2	0	Squalene/phytoene	synthase
AMMECR1	PF01871.12	gi|385802438|ref|YP_005838838.1|	-	7.5e-48	161.8	0.0	8.6e-48	161.6	0.0	1.0	1	0	0	1	1	1	1	AMMECR1
QRPTase_C	PF01729.14	gi|385802439|ref|YP_005838839.1|	-	7.5e-19	67.8	0.0	1.1e-18	67.3	0.0	1.3	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.11	gi|385802439|ref|YP_005838839.1|	-	0.0016	18.2	0.0	0.0039	16.9	0.0	1.7	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
Peptidase_MA_2	PF13485.1	gi|385802440|ref|YP_005838840.1|	-	3.8e-05	23.7	0.0	0.00014	21.8	0.0	2.1	1	0	0	1	1	1	1	Peptidase	MA	superfamily
Peptidase_M76	PF09768.4	gi|385802440|ref|YP_005838840.1|	-	0.0082	15.6	0.0	0.014	14.9	0.0	1.3	1	0	0	1	1	1	1	Peptidase	M76	family
Peptidase_M91	PF14891.1	gi|385802440|ref|YP_005838840.1|	-	0.038	14.0	0.3	0.16	12.0	0.2	1.9	1	1	0	1	1	1	0	Effector	protein
Myco_19_kDa	PF05481.7	gi|385802440|ref|YP_005838840.1|	-	0.066	13.0	3.6	1	9.1	0.4	2.3	2	0	0	2	2	2	0	Mycobacterium	19	kDa	lipoprotein	antigen
Zn_peptidase_2	PF04298.7	gi|385802440|ref|YP_005838840.1|	-	0.12	11.7	0.0	0.2	11.0	0.0	1.3	1	0	0	1	1	1	0	Putative	neutral	zinc	metallopeptidase
DUF2981	PF11200.3	gi|385802440|ref|YP_005838840.1|	-	0.26	10.3	3.6	0.076	12.0	0.3	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2981)
LPAM_1	PF08139.7	gi|385802440|ref|YP_005838840.1|	-	0.29	11.4	0.9	0.47	10.7	0.6	1.3	1	0	0	1	1	1	0	Prokaryotic	membrane	lipoprotein	lipid	attachment	site
Isochorismatase	PF00857.15	gi|385802441|ref|YP_005838841.1|	-	1e-50	172.1	0.1	1.1e-50	171.9	0.0	1.0	1	0	0	1	1	1	1	Isochorismatase	family
Amidohydro_4	PF13147.1	gi|385802442|ref|YP_005838842.1|	-	6.8e-30	105.0	7.2	6.9e-29	101.7	5.0	2.0	1	1	0	1	1	1	1	Amidohydrolase
Amidohydro_1	PF01979.15	gi|385802442|ref|YP_005838842.1|	-	4.1e-20	72.7	0.9	1.2e-19	71.1	0.6	1.9	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_5	PF13594.1	gi|385802442|ref|YP_005838842.1|	-	4.2e-14	52.1	0.3	1.4e-13	50.4	0.2	2.0	1	0	0	1	1	1	1	Amidohydrolase
Amidohydro_3	PF07969.6	gi|385802442|ref|YP_005838842.1|	-	1.7e-07	30.8	5.4	1.5e-06	27.7	1.5	2.2	2	0	0	2	2	2	1	Amidohydrolase	family
TatD_DNase	PF01026.16	gi|385802442|ref|YP_005838842.1|	-	0.0011	18.2	0.0	0.0069	15.6	0.0	2.3	1	1	0	1	1	1	1	TatD	related	DNase
DHOase	PF12890.2	gi|385802442|ref|YP_005838842.1|	-	0.0079	15.8	0.0	0.021	14.4	0.0	1.8	2	0	0	2	2	2	1	Dihydro-orotase-like
AP_endonuc_2	PF01261.19	gi|385802442|ref|YP_005838842.1|	-	0.017	14.4	0.1	0.027	13.7	0.0	1.3	1	0	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
Usp	PF00582.21	gi|385802442|ref|YP_005838842.1|	-	0.025	14.7	0.1	0.072	13.2	0.0	1.8	1	0	0	1	1	1	0	Universal	stress	protein	family
DUF605	PF04652.11	gi|385802443|ref|YP_005838843.1|	-	0.16	11.3	8.3	0.036	13.4	3.9	1.5	2	0	0	2	2	2	0	Vta1	like
Lin-8	PF03353.10	gi|385802443|ref|YP_005838843.1|	-	5.9	6.0	11.8	0.35	10.1	4.8	1.5	2	0	0	2	2	2	0	Ras-mediated	vulval-induction	antagonist
Usp	PF00582.21	gi|385802444|ref|YP_005838844.1|	-	6e-16	58.9	0.5	1.3e-15	57.8	0.3	1.5	1	1	0	1	1	1	1	Universal	stress	protein	family
Alk_phosphatase	PF00245.15	gi|385802444|ref|YP_005838844.1|	-	0.018	13.7	0.2	0.02	13.5	0.1	1.0	1	0	0	1	1	1	0	Alkaline	phosphatase
Acetyltransf_1	PF00583.19	gi|385802445|ref|YP_005838845.1|	-	2.4e-12	46.7	0.0	3.6e-12	46.1	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_3	PF13302.1	gi|385802445|ref|YP_005838845.1|	-	4.5e-06	26.8	0.0	5.3e-06	26.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|385802445|ref|YP_005838845.1|	-	8.2e-06	25.4	0.0	1.2e-05	24.9	0.0	1.2	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_10	PF13673.1	gi|385802445|ref|YP_005838845.1|	-	1.1e-05	25.5	0.0	1.4e-05	25.1	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|385802445|ref|YP_005838845.1|	-	0.00022	21.3	0.0	0.00033	20.7	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|385802445|ref|YP_005838845.1|	-	0.0084	16.0	0.0	0.011	15.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Usp	PF00582.21	gi|385802446|ref|YP_005838846.1|	-	4e-15	56.2	2.1	5.6e-15	55.7	1.4	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
Usp	PF00582.21	gi|385802447|ref|YP_005838847.1|	-	4e-32	111.3	0.1	4.6e-32	111.1	0.1	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
Glyco_hydro_3_C	PF01915.17	gi|385802447|ref|YP_005838847.1|	-	0.013	15.0	0.1	0.016	14.7	0.1	1.1	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	3	C-terminal	domain
DHHA1	PF02272.14	gi|385802448|ref|YP_005838848.1|	-	0.0018	17.9	0.1	0.0046	16.6	0.0	1.6	1	0	0	1	1	1	1	DHHA1	domain
DHH	PF01368.15	gi|385802448|ref|YP_005838848.1|	-	0.0052	16.4	0.1	0.024	14.2	0.1	2.0	1	1	0	1	1	1	1	DHH	family
SURF2	PF05477.6	gi|385802448|ref|YP_005838848.1|	-	10	5.1	7.2	4	6.5	2.8	1.8	2	0	0	2	2	2	0	Surfeit	locus	protein	2	(SURF2)
HSP20	PF00011.16	gi|385802450|ref|YP_005838850.1|	-	3.7e-14	52.4	0.0	4.7e-14	52.0	0.0	1.1	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
Ribosomal_S6e	PF01092.14	gi|385802451|ref|YP_005838851.1|	-	1.1e-35	121.9	0.4	1.5e-35	121.6	0.3	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S6e
Daxx	PF03344.10	gi|385802451|ref|YP_005838851.1|	-	0.33	9.3	9.1	0.37	9.2	6.3	1.1	1	0	0	1	1	1	0	Daxx	Family
Nop14	PF04147.7	gi|385802451|ref|YP_005838851.1|	-	4.9	4.9	12.7	3.8	5.3	8.8	1.1	1	0	0	1	1	1	0	Nop14-like	family
Cwf_Cwc_15	PF04889.7	gi|385802451|ref|YP_005838851.1|	-	5.3	6.6	8.5	7.9	6.1	5.9	1.3	1	0	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
Response_reg	PF00072.19	gi|385802454|ref|YP_005838854.1|	-	1.6e-20	73.2	0.0	6.1e-20	71.3	0.0	2.0	2	0	0	2	2	2	1	Response	regulator	receiver	domain
HATPase_c	PF02518.21	gi|385802454|ref|YP_005838854.1|	-	2e-17	62.9	0.1	5.9e-17	61.3	0.0	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.1	gi|385802454|ref|YP_005838854.1|	-	4.6e-15	55.8	0.4	2.1e-11	44.1	0.0	3.2	3	0	0	3	3	3	2	PAS	domain
PAS_3	PF08447.6	gi|385802454|ref|YP_005838854.1|	-	2.3e-13	50.0	0.0	1.7e-06	28.0	0.0	2.8	2	0	0	2	2	2	2	PAS	fold
PAS_4	PF08448.5	gi|385802454|ref|YP_005838854.1|	-	2.7e-11	43.4	0.1	1.5e-07	31.4	0.0	3.2	2	0	0	2	2	2	2	PAS	fold
HisKA	PF00512.20	gi|385802454|ref|YP_005838854.1|	-	1.7e-10	40.6	0.2	1.7e-10	40.6	0.2	3.8	4	0	0	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
GAF_2	PF13185.1	gi|385802454|ref|YP_005838854.1|	-	8.2e-09	36.1	0.9	2e-08	34.8	0.7	1.7	1	0	0	1	1	1	1	GAF	domain
PAS	PF00989.19	gi|385802454|ref|YP_005838854.1|	-	1.4e-07	31.2	0.1	0.00032	20.4	0.0	3.0	2	0	0	2	2	2	2	PAS	fold
GAF_3	PF13492.1	gi|385802454|ref|YP_005838854.1|	-	1.6e-07	31.4	0.1	3.2e-07	30.4	0.1	1.5	1	0	0	1	1	1	1	GAF	domain
PAS_8	PF13188.1	gi|385802454|ref|YP_005838854.1|	-	9.9e-06	25.2	0.0	6.4e-05	22.6	0.0	2.4	2	0	0	2	2	2	1	PAS	domain
HATPase_c_2	PF13581.1	gi|385802454|ref|YP_005838854.1|	-	0.0033	17.1	0.1	0.025	14.3	0.0	2.4	2	1	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
Peptidase_M29	PF02073.10	gi|385802455|ref|YP_005838855.1|	-	4.8e-110	368.0	1.1	5.4e-110	367.8	0.8	1.0	1	0	0	1	1	1	1	Thermophilic	metalloprotease	(M29)
X	PF00739.14	gi|385802455|ref|YP_005838855.1|	-	0.11	12.4	0.0	0.24	11.2	0.0	1.6	1	0	0	1	1	1	0	Trans-activation	protein	X
NAD_binding_2	PF03446.10	gi|385802456|ref|YP_005838856.1|	-	1.2e-33	116.2	0.1	1.7e-33	115.7	0.1	1.2	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
6PGD	PF00393.14	gi|385802456|ref|YP_005838856.1|	-	1.9e-22	79.8	0.0	2.5e-22	79.4	0.0	1.2	1	0	0	1	1	1	1	6-phosphogluconate	dehydrogenase,	C-terminal	domain
NAD_binding_11	PF14833.1	gi|385802456|ref|YP_005838856.1|	-	1.9e-05	24.6	0.2	0.032	14.2	0.0	3.1	2	1	1	3	3	3	2	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
F420_oxidored	PF03807.12	gi|385802456|ref|YP_005838856.1|	-	8e-05	23.0	0.1	0.00014	22.1	0.0	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
TrkA_N	PF02254.13	gi|385802456|ref|YP_005838856.1|	-	0.00018	21.4	0.1	0.00042	20.2	0.0	1.7	2	0	0	2	2	2	1	TrkA-N	domain
2-Hacid_dh_C	PF02826.14	gi|385802456|ref|YP_005838856.1|	-	0.0002	20.5	0.0	0.0003	20.0	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.13	gi|385802456|ref|YP_005838856.1|	-	0.0012	18.5	0.2	0.0018	17.9	0.1	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.9	gi|385802456|ref|YP_005838856.1|	-	0.048	13.0	0.0	0.069	12.5	0.0	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
DapB_N	PF01113.15	gi|385802456|ref|YP_005838856.1|	-	0.094	12.6	1.1	0.28	11.0	0.8	1.8	1	1	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
Fer2	PF00111.22	gi|385802457|ref|YP_005838857.1|	-	4.3e-12	45.6	0.5	7.7e-12	44.8	0.4	1.4	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
DUF3784	PF12650.2	gi|385802458|ref|YP_005838858.1|	-	0.00071	19.4	1.3	0.0015	18.4	0.4	1.8	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF3784)
YtpI	PF14007.1	gi|385802458|ref|YP_005838858.1|	-	0.017	15.0	0.2	0.017	15.0	0.2	2.6	3	0	0	3	3	3	0	YtpI-like	protein
DUF2231	PF09990.4	gi|385802458|ref|YP_005838858.1|	-	0.5	10.7	3.9	11	6.4	0.1	2.1	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2231)
PepSY_TM_2	PF13703.1	gi|385802458|ref|YP_005838858.1|	-	4.9	7.4	8.3	8	6.7	1.6	2.4	1	1	1	2	2	2	0	PepSY-associated	TM	helix
DUF3040	PF11239.3	gi|385802458|ref|YP_005838858.1|	-	9.4	6.3	9.0	3.6	7.6	1.2	2.3	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3040)
HTH_3	PF01381.17	gi|385802459|ref|YP_005838859.1|	-	4e-13	49.0	0.0	5.2e-13	48.6	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.2	gi|385802459|ref|YP_005838859.1|	-	1.1e-08	35.0	0.0	1.8e-08	34.3	0.0	1.3	1	1	1	2	2	2	1	Helix-turn-helix	domain
HTH_26	PF13443.1	gi|385802459|ref|YP_005838859.1|	-	3.4e-06	27.1	0.0	4.1e-06	26.8	0.0	1.1	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_31	PF13560.1	gi|385802459|ref|YP_005838859.1|	-	8.9e-05	22.6	0.0	0.0001	22.4	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|385802459|ref|YP_005838859.1|	-	0.00044	19.9	0.0	0.0006	19.5	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_11	PF08279.7	gi|385802459|ref|YP_005838859.1|	-	0.0042	16.7	0.0	0.0066	16.0	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_25	PF13413.1	gi|385802459|ref|YP_005838859.1|	-	0.006	16.1	0.0	0.0075	15.8	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF4322	PF14210.1	gi|385802459|ref|YP_005838859.1|	-	0.15	11.5	0.1	0.24	10.8	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4322)
DUF2178	PF09946.4	gi|385802460|ref|YP_005838860.1|	-	0.00012	21.7	0.4	0.0013	18.4	0.1	2.1	1	1	1	2	2	2	1	Predicted	membrane	protein	(DUF2178)
DUF2919	PF11143.3	gi|385802460|ref|YP_005838860.1|	-	0.038	13.8	1.2	0.16	11.8	0.1	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2919)
DUF3040	PF11239.3	gi|385802460|ref|YP_005838860.1|	-	0.5	10.4	13.5	0.88	9.6	1.7	2.6	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3040)
DoxX	PF07681.7	gi|385802460|ref|YP_005838860.1|	-	0.57	10.6	8.4	0.48	10.8	2.3	2.4	2	0	0	2	2	2	0	DoxX
HTH_23	PF13384.1	gi|385802461|ref|YP_005838861.1|	-	1.3e-05	24.6	0.1	4.5e-05	22.9	0.0	2.0	2	1	0	2	2	2	1	Homeodomain-like	domain
HTH_29	PF13551.1	gi|385802461|ref|YP_005838861.1|	-	0.00017	21.6	0.1	0.00036	20.6	0.1	1.6	1	1	1	2	2	2	1	Winged	helix-turn	helix
HTH_28	PF13518.1	gi|385802461|ref|YP_005838861.1|	-	0.00032	20.6	0.0	0.00087	19.2	0.0	1.8	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_7	PF02796.10	gi|385802461|ref|YP_005838861.1|	-	0.0026	17.5	0.0	0.0065	16.3	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
Ribosomal_L21e	PF01157.13	gi|385802461|ref|YP_005838861.1|	-	0.01	15.6	0.0	0.016	15.0	0.0	1.4	1	0	0	1	1	1	0	Ribosomal	protein	L21e
HTH_3	PF01381.17	gi|385802461|ref|YP_005838861.1|	-	0.02	14.7	0.0	0.18	11.6	0.0	2.2	1	1	1	2	2	2	0	Helix-turn-helix
Phage_NinH	PF06322.6	gi|385802461|ref|YP_005838861.1|	-	0.025	14.2	0.2	0.044	13.4	0.1	1.4	1	0	0	1	1	1	0	Phage	NinH	protein
HTH_11	PF08279.7	gi|385802461|ref|YP_005838861.1|	-	0.032	13.8	0.2	0.66	9.6	0.0	2.2	1	1	1	2	2	2	0	HTH	domain
HTH_8	PF02954.14	gi|385802461|ref|YP_005838861.1|	-	0.055	13.0	0.0	0.11	12.0	0.0	1.5	1	1	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
HTH_36	PF13730.1	gi|385802461|ref|YP_005838861.1|	-	0.082	13.0	0.0	1.2	9.3	0.0	2.5	2	1	1	3	3	3	0	Helix-turn-helix	domain
Sigma70_r4	PF04545.11	gi|385802461|ref|YP_005838861.1|	-	0.12	11.6	0.1	0.5	9.7	0.0	2.1	1	1	2	3	3	3	0	Sigma-70,	region	4
GerE	PF00196.14	gi|385802461|ref|YP_005838861.1|	-	0.13	11.5	0.0	0.26	10.6	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_28	PF13518.1	gi|385802462|ref|YP_005838862.1|	-	0.0034	17.3	0.1	0.0094	15.9	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_29	PF13551.1	gi|385802462|ref|YP_005838862.1|	-	0.0064	16.6	0.0	0.041	14.0	0.0	2.2	3	0	0	3	3	3	1	Winged	helix-turn	helix
TrmB	PF01978.14	gi|385802462|ref|YP_005838862.1|	-	0.026	14.2	0.0	0.12	12.1	0.0	2.0	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_23	PF13384.1	gi|385802462|ref|YP_005838862.1|	-	0.049	13.2	0.0	0.11	12.1	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
NTP_transf_5	PF14907.1	gi|385802463|ref|YP_005838863.1|	-	1.2e-05	24.8	0.1	2.3e-05	23.8	0.0	1.4	1	1	0	1	1	1	1	Uncharacterised	nucleotidyltransferase
DUF1814	PF08843.6	gi|385802463|ref|YP_005838863.1|	-	0.0003	20.6	1.1	0.0005	19.9	0.7	1.3	1	1	0	1	1	1	1	Nucleotidyl	transferase	of	unknown	function	(DUF1814)
DUF2202	PF09968.4	gi|385802463|ref|YP_005838863.1|	-	0.071	12.7	0.2	0.12	12.0	0.1	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	domain	(DUF2202)
RHH_1	PF01402.16	gi|385802465|ref|YP_005838865.1|	-	0.0011	18.7	0.0	0.0036	17.1	0.0	1.8	2	1	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
DUF3960	PF13142.1	gi|385802465|ref|YP_005838865.1|	-	0.033	13.9	0.0	0.045	13.5	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3960)
CsgG	PF03783.9	gi|385802465|ref|YP_005838865.1|	-	0.058	12.4	0.1	0.061	12.3	0.1	1.0	1	0	0	1	1	1	0	Curli	production	assembly/transport	component	CsgG
Plasmid_stabil	PF05016.9	gi|385802466|ref|YP_005838866.1|	-	0.00039	20.7	0.0	0.0005	20.4	0.0	1.1	1	0	0	1	1	1	1	Plasmid	stabilisation	system	protein
Ion_trans	PF00520.26	gi|385802469|ref|YP_005838869.1|	-	6.5e-20	71.2	7.0	1e-19	70.5	4.9	1.3	1	0	0	1	1	1	1	Ion	transport	protein
Ion_trans_2	PF07885.11	gi|385802469|ref|YP_005838869.1|	-	1.2e-12	47.3	1.3	1.2e-12	47.3	0.9	2.0	3	0	0	3	3	3	1	Ion	channel
zf-ribbon_3	PF13248.1	gi|385802469|ref|YP_005838869.1|	-	0.011	14.9	0.1	0.017	14.3	0.0	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|385802469|ref|YP_005838869.1|	-	0.054	13.0	0.3	0.089	12.3	0.2	1.2	1	0	0	1	1	1	0	zinc-ribbon	domain
HXXEE	PF13787.1	gi|385802469|ref|YP_005838869.1|	-	0.36	11.2	3.9	0.85	9.9	0.4	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	with	HXXEE	motif
Glug	PF07581.7	gi|385802470|ref|YP_005838870.1|	-	3.6e-111	356.2	944.9	0.00071	19.6	0.8	112.3	110	2	2	112	112	112	74	The	GLUG	motif
HHH_5	PF14520.1	gi|385802470|ref|YP_005838870.1|	-	4.7e-10	39.4	0.7	0.034	14.3	0.0	3.7	3	0	0	3	3	3	3	Helix-hairpin-helix	domain
Peptidase_M26_N	PF05342.9	gi|385802470|ref|YP_005838870.1|	-	6.2e-08	31.9	20.8	0.39	9.6	0.3	7.0	6	0	0	6	6	6	6	M26	IgA1-specific	Metallo-endopeptidase	N-terminal	region
DUF4332	PF14229.1	gi|385802470|ref|YP_005838870.1|	-	3.1e-07	30.3	0.2	0.7	9.8	0.0	3.5	3	0	0	3	3	3	3	Domain	of	unknown	function	(DUF4332)
Cdd1	PF11731.3	gi|385802470|ref|YP_005838870.1|	-	0.0027	17.6	0.0	0.94	9.4	0.0	2.9	3	0	0	3	3	3	1	Pathogenicity	locus
Sec63	PF02889.11	gi|385802470|ref|YP_005838870.1|	-	2.3	7.3	0.0	6.1	5.9	0.0	1.7	1	0	0	1	1	1	0	Sec63	Brl	domain
Fer4_12	PF13353.1	gi|385802470|ref|YP_005838870.1|	-	4.2	7.4	0.0	10	6.2	0.0	1.5	1	0	0	1	1	1	0	4Fe-4S	single	cluster	domain
Ephrin_lbd	PF01404.14	gi|385802470|ref|YP_005838870.1|	-	6.7	6.4	0.6	82	2.9	0.0	2.4	2	0	0	2	2	2	0	Ephrin	receptor	ligand	binding	domain
Mur_ligase_M	PF08245.7	gi|385802471|ref|YP_005838871.1|	-	0.00048	20.2	0.0	0.001	19.1	0.0	1.5	1	1	0	1	1	1	1	Mur	ligase	middle	domain
Caps_synth_CapC	PF14102.1	gi|385802472|ref|YP_005838872.1|	-	3.8e-09	36.7	35.6	4.5e-08	33.2	5.5	3.2	4	0	0	4	4	4	2	Capsule	biosynthesis	CapC
HTH_10	PF04967.7	gi|385802474|ref|YP_005838874.1|	-	4.1e-10	39.0	0.0	9.8e-10	37.8	0.0	1.7	1	0	0	1	1	1	1	HTH	DNA	binding	domain
PAS_8	PF13188.1	gi|385802474|ref|YP_005838874.1|	-	1.1e-06	28.2	0.0	0.0018	18.0	0.0	2.7	2	0	0	2	2	2	2	PAS	domain
PAS	PF00989.19	gi|385802474|ref|YP_005838874.1|	-	1.6e-05	24.6	0.0	0.055	13.2	0.0	2.6	2	0	0	2	2	2	2	PAS	fold
PAS_4	PF08448.5	gi|385802474|ref|YP_005838874.1|	-	0.0039	17.1	0.0	0.083	12.9	0.0	2.6	2	0	0	2	2	2	1	PAS	fold
PAS_9	PF13426.1	gi|385802474|ref|YP_005838874.1|	-	0.012	15.9	0.0	1.2	9.5	0.0	2.7	2	0	0	2	2	2	0	PAS	domain
Pox_A14	PF05767.7	gi|385802474|ref|YP_005838874.1|	-	8.5	6.4	6.4	0.77	9.7	0.2	2.3	3	0	0	3	3	3	0	Poxvirus	virion	envelope	protein	A14
Pyr_redox_2	PF07992.9	gi|385802475|ref|YP_005838875.1|	-	2.2e-20	73.3	0.0	3.4e-20	72.7	0.0	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|385802475|ref|YP_005838875.1|	-	9e-10	38.8	0.6	5.1e-08	33.2	0.0	3.2	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|385802475|ref|YP_005838875.1|	-	1.1e-08	35.0	0.0	4.5e-08	33.0	0.0	2.0	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox_3	PF13738.1	gi|385802475|ref|YP_005838875.1|	-	3.2e-07	30.6	0.2	3.3e-06	27.3	0.1	2.5	1	1	1	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
TrkA_N	PF02254.13	gi|385802475|ref|YP_005838875.1|	-	1e-05	25.4	0.0	0.00086	19.2	0.0	2.6	2	0	0	2	2	2	1	TrkA-N	domain
Semialdhyde_dh	PF01118.19	gi|385802475|ref|YP_005838875.1|	-	6.6e-05	23.1	0.1	0.044	14.0	0.0	3.0	3	0	0	3	3	3	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
GIDA	PF01134.17	gi|385802475|ref|YP_005838875.1|	-	0.00019	20.4	2.5	0.22	10.3	0.0	3.0	2	1	0	2	2	2	2	Glucose	inhibited	division	protein	A
ThiF	PF00899.16	gi|385802475|ref|YP_005838875.1|	-	0.025	14.4	0.1	2.7	7.8	0.0	2.5	2	0	0	2	2	2	0	ThiF	family
Saccharop_dh	PF03435.13	gi|385802475|ref|YP_005838875.1|	-	0.027	13.4	0.0	1.4	7.8	0.0	2.2	2	0	0	2	2	2	0	Saccharopine	dehydrogenase
DUF457	PF04307.9	gi|385802476|ref|YP_005838876.1|	-	2.5e-07	30.1	8.8	4.5e-07	29.3	6.1	1.4	1	1	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
DUF4131	PF13567.1	gi|385802477|ref|YP_005838877.1|	-	0.016	14.6	0.2	0.27	10.6	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
MarR_2	PF12802.2	gi|385802478|ref|YP_005838878.1|	-	4.6e-08	32.6	0.0	9e-08	31.6	0.0	1.5	1	1	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.5	gi|385802478|ref|YP_005838878.1|	-	1.1e-07	31.2	0.0	2.9e-07	29.9	0.0	1.7	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
TrmB	PF01978.14	gi|385802478|ref|YP_005838878.1|	-	3.1e-07	29.9	0.0	5.2e-07	29.2	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|385802478|ref|YP_005838878.1|	-	3.2e-06	26.7	0.0	6.3e-06	25.8	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.2	gi|385802478|ref|YP_005838878.1|	-	1e-05	25.2	0.0	2e-05	24.3	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|385802478|ref|YP_005838878.1|	-	2.3e-05	23.6	0.0	0.00011	21.4	0.0	2.1	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|385802478|ref|YP_005838878.1|	-	0.0001	21.8	0.0	0.00017	21.1	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TFIIE_alpha	PF02002.12	gi|385802478|ref|YP_005838878.1|	-	0.0039	16.6	0.0	0.006	16.0	0.0	1.3	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_36	PF13730.1	gi|385802478|ref|YP_005838878.1|	-	0.0065	16.5	0.0	0.011	15.7	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|385802478|ref|YP_005838878.1|	-	0.0071	16.6	0.0	0.021	15.1	0.0	1.8	2	0	0	2	2	1	1	Winged	helix	DNA-binding	domain
HTH_11	PF08279.7	gi|385802478|ref|YP_005838878.1|	-	0.025	14.2	0.0	0.048	13.3	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
GntR	PF00392.16	gi|385802478|ref|YP_005838878.1|	-	0.03	13.7	0.0	0.054	12.9	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
FeoC	PF09012.5	gi|385802478|ref|YP_005838878.1|	-	0.05	13.3	0.0	0.14	11.8	0.0	1.7	2	0	0	2	2	2	0	FeoC	like	transcriptional	regulator
HTH_23	PF13384.1	gi|385802478|ref|YP_005838878.1|	-	0.057	13.0	0.0	0.1	12.3	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_Crp_2	PF13545.1	gi|385802478|ref|YP_005838878.1|	-	0.062	13.1	0.0	0.11	12.3	0.0	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|385802478|ref|YP_005838878.1|	-	0.084	12.4	0.0	0.15	11.6	0.0	1.4	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
DUF2576	PF10845.3	gi|385802478|ref|YP_005838878.1|	-	0.091	11.9	1.5	0.16	11.1	0.0	2.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2576)
HTH_38	PF13936.1	gi|385802478|ref|YP_005838878.1|	-	0.16	11.5	0.0	0.31	10.6	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
NAD_synthase	PF02540.12	gi|385802480|ref|YP_005838880.1|	-	2.4e-82	275.4	0.0	2.9e-82	275.2	0.0	1.0	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.11	gi|385802480|ref|YP_005838880.1|	-	4e-07	28.9	0.0	0.00022	19.8	0.0	2.2	2	0	0	2	2	2	2	tRNA	methyl	transferase
Asn_synthase	PF00733.16	gi|385802480|ref|YP_005838880.1|	-	2.9e-06	26.9	0.0	3.3e-06	26.8	0.0	1.2	1	0	0	1	1	1	1	Asparagine	synthase
QueC	PF06508.8	gi|385802480|ref|YP_005838880.1|	-	4.2e-05	22.9	0.0	0.00013	21.2	0.0	1.8	1	1	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
Aldo_ket_red	PF00248.16	gi|385802482|ref|YP_005838882.1|	-	7.3e-46	156.2	0.0	8.5e-46	156.0	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Chlor_dismutase	PF06778.7	gi|385802483|ref|YP_005838883.1|	-	1.2e-57	194.7	0.0	2.4e-57	193.7	0.0	1.5	1	0	0	1	1	1	1	Chlorite	dismutase
ABM	PF03992.11	gi|385802483|ref|YP_005838883.1|	-	9.3e-07	28.7	5.8	2.1e-06	27.6	0.0	3.3	3	0	0	3	3	3	1	Antibiotic	biosynthesis	monooxygenase
Peptidase_M50	PF02163.17	gi|385802484|ref|YP_005838884.1|	-	1.4e-26	92.6	0.0	5.2e-26	90.8	0.0	2.0	2	1	0	2	2	2	1	Peptidase	family	M50
PDZ_2	PF13180.1	gi|385802484|ref|YP_005838884.1|	-	7.7e-18	64.1	0.3	2.9e-08	33.4	0.1	2.4	2	0	0	2	2	2	2	PDZ	domain
Tricorn_PDZ	PF14685.1	gi|385802484|ref|YP_005838884.1|	-	2e-12	46.7	1.2	1.3e-05	24.9	0.1	2.6	2	0	0	2	2	2	2	Tricorn	protease	PDZ	domain
PDZ	PF00595.19	gi|385802484|ref|YP_005838884.1|	-	5.6e-09	36.0	0.2	0.00038	20.5	0.1	2.6	2	0	0	2	2	2	2	PDZ	domain	(Also	known	as	DHR	or	GLGF)
tRNA-synt_1f	PF01921.13	gi|385802486|ref|YP_005838886.1|	-	8.1e-99	330.6	0.0	1.1e-98	330.1	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1g	PF09334.6	gi|385802486|ref|YP_005838886.1|	-	4e-06	25.7	0.0	0.00015	20.5	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1e	PF01406.14	gi|385802486|ref|YP_005838886.1|	-	0.0056	15.8	0.0	0.019	14.1	0.0	1.8	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(C)	catalytic	domain
AA_kinase	PF00696.23	gi|385802487|ref|YP_005838887.1|	-	6.5e-25	88.0	5.0	8.3e-25	87.7	3.5	1.1	1	0	0	1	1	1	1	Amino	acid	kinase	family
Phosphonate-bd	PF12974.2	gi|385802487|ref|YP_005838887.1|	-	0.062	12.6	1.5	0.23	10.8	0.0	2.3	2	1	0	2	2	2	0	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
MoaE	PF02391.12	gi|385802488|ref|YP_005838888.1|	-	2.2e-23	82.2	0.1	3.4e-23	81.6	0.1	1.3	1	0	0	1	1	1	1	MoaE	protein
Peptidase_M50	PF02163.17	gi|385802490|ref|YP_005838890.1|	-	5.6e-17	61.3	5.8	2.8e-16	59.0	2.3	2.6	2	1	0	2	2	2	1	Peptidase	family	M50
AIRS	PF00586.19	gi|385802491|ref|YP_005838891.1|	-	2.3e-17	63.0	2.6	2.3e-17	63.0	1.8	2.1	3	0	0	3	3	3	1	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.17	gi|385802491|ref|YP_005838891.1|	-	1.8e-08	34.5	0.1	2.8e-08	33.9	0.0	1.3	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
Septum_form	PF13845.1	gi|385802491|ref|YP_005838891.1|	-	0.071	12.6	0.0	0.16	11.4	0.0	1.5	2	0	0	2	2	2	0	Septum	formation
UPF0104	PF03706.8	gi|385802492|ref|YP_005838892.1|	-	8.1e-38	130.3	33.6	1.3e-37	129.7	23.3	1.2	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0104)
Per1	PF04080.8	gi|385802492|ref|YP_005838892.1|	-	0.0016	17.9	2.9	0.0097	15.3	0.3	2.1	2	0	0	2	2	2	2	Per1-like
Ribosomal_S19e	PF01090.14	gi|385802493|ref|YP_005838893.1|	-	1.8e-48	163.5	0.0	2.1e-48	163.3	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S19e
GntR	PF00392.16	gi|385802493|ref|YP_005838893.1|	-	3.2e-05	23.2	0.1	0.00091	18.6	0.1	2.5	3	0	0	3	3	3	1	Bacterial	regulatory	proteins,	gntR	family
Mrr_N	PF14338.1	gi|385802493|ref|YP_005838893.1|	-	0.017	15.2	0.0	0.28	11.2	0.0	2.1	2	0	0	2	2	2	0	Mrr	N-terminal	domain
Ftsk_gamma	PF09397.5	gi|385802493|ref|YP_005838893.1|	-	0.03	14.0	0.1	1.1	9.0	0.0	2.8	3	0	0	3	3	3	0	Ftsk	gamma	domain
Palm_thioest	PF02089.10	gi|385802493|ref|YP_005838893.1|	-	0.051	12.4	0.0	0.064	12.1	0.0	1.1	1	0	0	1	1	1	0	Palmitoyl	protein	thioesterase
Rrf2	PF02082.15	gi|385802493|ref|YP_005838893.1|	-	0.062	13.4	0.1	0.19	11.8	0.0	1.8	1	1	1	2	2	2	0	Transcriptional	regulator
dsDNA_bind	PF01984.15	gi|385802494|ref|YP_005838894.1|	-	7.1e-27	93.4	15.3	8.5e-27	93.2	10.6	1.0	1	0	0	1	1	1	1	Double-stranded	DNA-binding	domain
FliG_C	PF01706.11	gi|385802494|ref|YP_005838894.1|	-	0.11	12.4	0.2	0.11	12.4	0.1	2.2	2	1	0	2	2	2	0	FliG	C-terminal	domain
PA26	PF04636.8	gi|385802494|ref|YP_005838894.1|	-	0.14	10.7	2.0	0.16	10.6	1.4	1.0	1	0	0	1	1	1	0	PA26	p53-induced	protein	(sestrin)
Caps_synth_GfcC	PF06251.6	gi|385802494|ref|YP_005838894.1|	-	0.52	9.4	7.9	0.66	9.1	5.5	1.1	1	0	0	1	1	1	0	Capsule	biosynthesis	GfcC
DUF2188	PF09954.4	gi|385802494|ref|YP_005838894.1|	-	0.74	9.7	5.6	0.73	9.7	2.2	2.0	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2188)
Hid1	PF12722.2	gi|385802494|ref|YP_005838894.1|	-	1.1	6.8	7.6	1.2	6.7	5.3	1.0	1	0	0	1	1	1	0	High-temperature-induced	dauer-formation	protein
Rotamase_2	PF13145.1	gi|385802494|ref|YP_005838894.1|	-	1.7	9.2	8.4	2.1	8.9	5.8	1.3	1	1	0	1	1	1	0	PPIC-type	PPIASE	domain
APC_CDC26	PF10471.4	gi|385802494|ref|YP_005838894.1|	-	3.3	8.5	16.1	32	5.3	11.1	2.1	1	1	0	1	1	1	0	Anaphase-promoting	complex	APC	subunit	1
DUF4404	PF14357.1	gi|385802494|ref|YP_005838894.1|	-	8.5	6.8	10.7	5.1	7.5	5.2	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4404)
Syntaxin_2	PF14523.1	gi|385802494|ref|YP_005838894.1|	-	9	6.3	9.4	6.1	6.9	3.6	2.0	1	1	1	2	2	2	0	Syntaxin-like	protein
Mnd1	PF03962.10	gi|385802494|ref|YP_005838894.1|	-	9.1	5.8	11.1	7.7	6.1	6.8	1.4	1	1	0	1	1	1	0	Mnd1	family
Asn_synthase	PF00733.16	gi|385802495|ref|YP_005838895.1|	-	2.1e-05	24.1	0.5	7.5e-05	22.3	0.1	1.8	1	1	1	2	2	2	1	Asparagine	synthase
tRNA_Me_trans	PF03054.11	gi|385802495|ref|YP_005838895.1|	-	0.0069	14.9	0.1	0.027	13.0	0.1	1.8	1	1	0	1	1	1	1	tRNA	methyl	transferase
ATP_bind_4	PF01902.12	gi|385802495|ref|YP_005838895.1|	-	0.01	15.2	0.1	0.019	14.3	0.1	1.4	1	1	0	1	1	1	0	ATP-binding	region
NAD_synthase	PF02540.12	gi|385802495|ref|YP_005838895.1|	-	0.031	13.1	0.0	0.046	12.6	0.0	1.3	1	0	0	1	1	1	0	NAD	synthase
PAPS_reduct	PF01507.14	gi|385802495|ref|YP_005838895.1|	-	0.04	13.7	0.0	0.24	11.2	0.0	1.9	1	1	0	1	1	1	0	Phosphoadenosine	phosphosulfate	reductase	family
QueC	PF06508.8	gi|385802495|ref|YP_005838895.1|	-	0.1	11.8	0.0	0.2	10.8	0.0	1.4	1	1	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
tRNA-synt_His	PF13393.1	gi|385802496|ref|YP_005838896.1|	-	1.4e-47	162.2	0.0	1.7e-47	161.9	0.0	1.1	1	0	0	1	1	1	1	Histidyl-tRNA	synthetase
tRNA-synt_2b	PF00587.20	gi|385802496|ref|YP_005838896.1|	-	1.8e-20	73.2	0.0	2.6e-20	72.7	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.15	gi|385802496|ref|YP_005838896.1|	-	2.8e-12	46.4	0.5	6.2e-12	45.3	0.1	1.8	2	0	0	2	2	2	1	Anticodon	binding	domain
tRNA-synt_2d	PF01409.15	gi|385802496|ref|YP_005838896.1|	-	0.077	12.1	0.0	0.16	11.1	0.0	1.5	1	1	0	1	1	1	0	tRNA	synthetases	class	II	core	domain	(F)
PseudoU_synth_1	PF01416.15	gi|385802497|ref|YP_005838897.1|	-	2.2e-23	82.7	0.0	6.2e-11	42.6	0.0	2.3	2	0	0	2	2	2	2	tRNA	pseudouridine	synthase
zf-ribbon_3	PF13248.1	gi|385802498|ref|YP_005838898.1|	-	0.00071	18.7	1.3	0.58	9.4	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
UPF0547	PF10571.4	gi|385802498|ref|YP_005838898.1|	-	0.0008	19.0	1.4	0.093	12.4	0.1	2.2	2	0	0	2	2	2	1	Uncharacterised	protein	family	UPF0547
DZR	PF12773.2	gi|385802498|ref|YP_005838898.1|	-	0.00088	19.0	0.2	0.0012	18.6	0.2	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
PhnA_Zn_Ribbon	PF08274.7	gi|385802498|ref|YP_005838898.1|	-	0.0069	16.1	1.6	0.26	11.0	0.0	2.1	2	0	0	2	2	2	1	PhnA	Zinc-Ribbon
FYVE	PF01363.16	gi|385802498|ref|YP_005838898.1|	-	0.014	15.3	0.7	0.022	14.6	0.5	1.4	1	1	0	1	1	1	0	FYVE	zinc	finger
TF_Zn_Ribbon	PF08271.7	gi|385802498|ref|YP_005838898.1|	-	0.02	14.1	1.1	1.6	8.1	0.1	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-NADH-PPase	PF09297.6	gi|385802498|ref|YP_005838898.1|	-	0.045	13.2	2.7	0.96	9.0	0.1	2.5	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-ISL3	PF14690.1	gi|385802498|ref|YP_005838898.1|	-	0.058	13.4	0.9	4.9	7.2	0.1	2.1	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Prok-RING_1	PF14446.1	gi|385802498|ref|YP_005838898.1|	-	0.14	11.9	1.6	1.2	8.9	0.2	2.0	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
zinc_ribbon_2	PF13240.1	gi|385802498|ref|YP_005838898.1|	-	0.2	11.1	5.2	2.7	7.5	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Nudix_N_2	PF14803.1	gi|385802498|ref|YP_005838898.1|	-	0.24	11.1	5.7	0.83	9.3	4.0	1.8	1	1	0	1	1	1	0	Nudix	N-terminal
zf-HYPF	PF07503.7	gi|385802498|ref|YP_005838898.1|	-	0.27	10.6	2.2	2.6	7.5	0.2	2.2	2	0	0	2	2	2	0	HypF	finger
Sgf11	PF08209.6	gi|385802498|ref|YP_005838898.1|	-	0.29	10.4	2.6	9.2	5.6	0.1	2.3	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
Zn-ribbon_8	PF09723.5	gi|385802498|ref|YP_005838898.1|	-	0.53	10.2	5.6	4.3	7.3	3.6	2.1	1	1	0	1	1	1	0	Zinc	ribbon	domain
DUF35_N	PF12172.3	gi|385802498|ref|YP_005838898.1|	-	1.1	9.2	5.0	10	6.2	0.0	2.4	2	1	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DUF1610	PF07754.6	gi|385802498|ref|YP_005838898.1|	-	1.2	9.3	5.9	6.1	7.0	0.4	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
zf-IS66	PF13005.2	gi|385802498|ref|YP_005838898.1|	-	3.5	7.6	5.8	2.9	7.9	0.2	2.4	2	2	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Zn_Tnp_IS1595	PF12760.2	gi|385802498|ref|YP_005838898.1|	-	4	7.3	5.7	4.5	7.1	0.4	2.2	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
RecR	PF02132.10	gi|385802498|ref|YP_005838898.1|	-	4.2	6.8	7.4	15	5.1	5.1	1.8	1	1	0	1	1	1	0	RecR	protein
zf-RING_3	PF14369.1	gi|385802498|ref|YP_005838898.1|	-	4.5	7.3	6.6	38	4.3	4.3	2.2	1	1	0	1	1	1	0	zinc-finger
Peptidase_M3	PF01432.15	gi|385802499|ref|YP_005838899.1|	-	5.1e-70	236.7	4.1	5.6e-70	236.6	0.5	2.0	2	0	0	2	2	2	1	Peptidase	family	M3
Peptidase_M3_N	PF08439.5	gi|385802499|ref|YP_005838899.1|	-	7.9e-24	83.4	0.1	8.2e-23	80.2	0.1	2.9	3	0	0	3	3	3	1	Oligopeptidase	F
MCR_beta_N	PF02783.10	gi|385802499|ref|YP_005838899.1|	-	0.087	12.2	0.1	0.19	11.1	0.1	1.6	1	0	0	1	1	1	0	Methyl-coenzyme	M	reductase	beta	subunit,	N-terminal	domain
IncA	PF04156.9	gi|385802499|ref|YP_005838899.1|	-	6.4	6.3	7.5	4.9	6.7	3.5	2.0	2	0	0	2	2	2	0	IncA	protein
DUF3020	PF11223.3	gi|385802503|ref|YP_005838903.1|	-	0.008	16.5	2.2	0.012	16.0	1.5	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3020)
NIR_SIR	PF01077.17	gi|385802505|ref|YP_005838905.1|	-	4.4e-38	130.1	0.0	1.5e-26	92.5	0.0	2.5	3	0	0	3	3	3	2	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.12	gi|385802505|ref|YP_005838905.1|	-	6.2e-35	118.6	0.0	1.5e-16	59.7	0.0	3.2	2	1	0	2	2	2	2	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
DUF2993	PF11209.3	gi|385802506|ref|YP_005838906.1|	-	0.037	13.9	0.8	0.05	13.5	0.5	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2993)
HTH_AsnC-type	PF13404.1	gi|385802507|ref|YP_005838907.1|	-	2.5e-16	58.9	0.7	5.7e-16	57.7	0.5	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|385802507|ref|YP_005838907.1|	-	9.8e-16	56.8	0.1	1.4e-15	56.3	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|385802507|ref|YP_005838907.1|	-	6.7e-05	22.4	0.0	0.00011	21.8	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.17	gi|385802507|ref|YP_005838907.1|	-	0.00012	21.7	0.0	0.00018	21.1	0.0	1.3	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.2	gi|385802507|ref|YP_005838907.1|	-	0.0002	20.9	0.1	0.00034	20.2	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_Tnp_ISL3	PF13542.1	gi|385802507|ref|YP_005838907.1|	-	0.00081	18.5	0.0	0.0018	17.4	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_27	PF13463.1	gi|385802507|ref|YP_005838907.1|	-	0.0017	18.6	0.3	0.0036	17.6	0.1	1.7	2	0	0	2	2	1	1	Winged	helix	DNA-binding	domain
HTH_28	PF13518.1	gi|385802507|ref|YP_005838907.1|	-	0.0021	17.9	0.0	0.028	14.4	0.0	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_20	PF12840.2	gi|385802507|ref|YP_005838907.1|	-	0.0042	16.8	0.0	0.0079	15.9	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|385802507|ref|YP_005838907.1|	-	0.0057	16.3	0.0	0.01	15.5	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
zf-FCS	PF06467.9	gi|385802507|ref|YP_005838907.1|	-	0.0089	15.6	2.5	0.014	14.9	1.7	1.3	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
HTH_23	PF13384.1	gi|385802507|ref|YP_005838907.1|	-	0.009	15.6	0.1	0.15	11.7	0.0	2.2	2	0	0	2	2	2	1	Homeodomain-like	domain
ATPase-cat_bd	PF12156.3	gi|385802507|ref|YP_005838907.1|	-	0.016	15.7	2.6	0.033	14.7	1.8	1.5	1	0	0	1	1	1	0	Putative	metal-binding	domain	of	cation	transport	ATPase
Fe_dep_repress	PF01325.14	gi|385802507|ref|YP_005838907.1|	-	0.027	14.3	0.0	0.044	13.7	0.0	1.3	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
RNHCP	PF12647.2	gi|385802507|ref|YP_005838907.1|	-	0.034	13.9	0.5	0.06	13.1	0.4	1.3	1	0	0	1	1	1	0	RNHCP	domain
HTH_1	PF00126.22	gi|385802507|ref|YP_005838907.1|	-	0.035	13.8	0.0	0.074	12.8	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_Mga	PF08280.6	gi|385802507|ref|YP_005838907.1|	-	0.04	13.6	0.0	0.064	13.0	0.0	1.3	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
Arc_trans_TRASH	PF08394.5	gi|385802507|ref|YP_005838907.1|	-	0.044	13.9	2.7	0.088	12.9	1.8	1.6	1	0	0	1	1	1	0	Archaeal	TRASH	domain
HTH_IclR	PF09339.5	gi|385802507|ref|YP_005838907.1|	-	0.049	13.2	0.0	0.082	12.5	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_11	PF08279.7	gi|385802507|ref|YP_005838907.1|	-	0.11	12.1	0.1	0.17	11.5	0.1	1.4	1	0	0	1	1	1	0	HTH	domain
zf-H2C2_2	PF13465.1	gi|385802507|ref|YP_005838907.1|	-	0.32	11.3	2.0	0.67	10.3	0.5	2.0	2	0	0	2	2	2	0	Zinc-finger	double	domain
E1-E2_ATPase	PF00122.15	gi|385802508|ref|YP_005838908.1|	-	3e-53	180.2	3.4	7.1e-53	178.9	2.4	1.7	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.21	gi|385802508|ref|YP_005838908.1|	-	1.4e-52	179.2	6.9	3.3e-52	178.0	4.8	1.6	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.21	gi|385802508|ref|YP_005838908.1|	-	1.2e-20	73.3	0.1	8.5e-12	45.0	0.0	2.8	2	0	0	2	2	2	2	Heavy-metal-associated	domain
HAD	PF12710.2	gi|385802508|ref|YP_005838908.1|	-	1.5e-17	64.4	0.9	4.4e-17	62.8	0.6	1.9	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|385802508|ref|YP_005838908.1|	-	1.1e-05	25.1	1.2	0.0033	17.0	0.3	2.6	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.1	gi|385802508|ref|YP_005838908.1|	-	0.003	17.4	0.0	0.025	14.4	0.0	2.5	2	0	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
zf-LITAF-like	PF10601.4	gi|385802508|ref|YP_005838908.1|	-	0.38	10.6	1.0	11	6.0	0.0	2.7	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
Pyr_redox_2	PF07992.9	gi|385802509|ref|YP_005838909.1|	-	3.7e-32	111.8	0.0	9.7e-32	110.4	0.0	2.4	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|385802509|ref|YP_005838909.1|	-	3.4e-21	75.4	2.0	3.1e-16	59.5	0.0	3.7	4	0	0	4	4	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|385802509|ref|YP_005838909.1|	-	9.2e-10	38.5	0.0	5.3e-09	36.0	0.0	2.0	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
HI0933_like	PF03486.9	gi|385802509|ref|YP_005838909.1|	-	2.2e-07	29.7	0.0	0.37	9.1	0.0	4.0	3	1	1	4	4	4	3	HI0933-like	protein
FAD_binding_2	PF00890.19	gi|385802509|ref|YP_005838909.1|	-	6.9e-06	25.1	0.7	1.3	7.7	0.1	4.0	3	1	1	4	4	4	2	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|385802509|ref|YP_005838909.1|	-	2.2e-05	24.3	0.2	0.0038	17.2	0.0	3.3	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.1	gi|385802509|ref|YP_005838909.1|	-	7.8e-05	22.8	0.0	0.0078	16.2	0.0	3.0	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|385802509|ref|YP_005838909.1|	-	0.00066	18.6	6.9	3.4	6.4	0.0	4.1	3	1	1	4	4	4	2	FAD	dependent	oxidoreductase
3HCDH_N	PF02737.13	gi|385802509|ref|YP_005838909.1|	-	0.0064	16.1	0.0	0.011	15.3	0.0	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Amino_oxidase	PF01593.19	gi|385802509|ref|YP_005838909.1|	-	0.019	14.0	0.1	1.5	7.7	0.0	2.3	2	0	0	2	2	2	0	Flavin	containing	amine	oxidoreductase
UDPG_MGDP_dh_N	PF03721.9	gi|385802509|ref|YP_005838909.1|	-	0.073	12.4	0.0	0.58	9.5	0.0	2.2	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Beta-Casp	PF10996.3	gi|385802510|ref|YP_005838910.1|	-	5.9e-20	71.4	0.0	1.9e-19	69.8	0.0	1.8	2	0	0	2	2	2	1	Beta-Casp	domain
RMMBL	PF07521.7	gi|385802510|ref|YP_005838910.1|	-	4.4e-13	48.8	0.0	1e-12	47.6	0.0	1.7	1	0	0	1	1	1	1	RNA-metabolising	metallo-beta-lactamase
Lactamase_B_2	PF12706.2	gi|385802510|ref|YP_005838910.1|	-	2.1e-12	46.9	0.4	5.7e-12	45.5	0.4	1.6	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|385802510|ref|YP_005838910.1|	-	6.6e-12	45.4	1.8	9.7e-12	44.9	1.2	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.1	gi|385802510|ref|YP_005838910.1|	-	0.0065	16.1	0.4	0.05	13.3	0.1	2.2	1	1	1	2	2	2	1	Beta-lactamase	superfamily	domain
Rhodanese	PF00581.15	gi|385802510|ref|YP_005838910.1|	-	0.03	14.6	0.1	0.25	11.7	0.0	2.3	3	0	0	3	3	3	0	Rhodanese-like	domain
DUF4307	PF14155.1	gi|385802511|ref|YP_005838911.1|	-	0.027	14.2	0.7	0.55	10.0	0.0	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4307)
DUF916	PF06030.7	gi|385802511|ref|YP_005838911.1|	-	0.028	14.1	1.2	0.06	13.1	0.1	1.9	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF916)
zinc-ribbons_6	PF07191.7	gi|385802512|ref|YP_005838912.1|	-	0.0019	17.9	0.7	0.0022	17.7	0.5	1.1	1	0	0	1	1	1	1	zinc-ribbons
OrfB_Zn_ribbon	PF07282.6	gi|385802512|ref|YP_005838912.1|	-	0.0094	15.5	0.2	0.012	15.2	0.1	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
DZR	PF12773.2	gi|385802512|ref|YP_005838912.1|	-	0.011	15.4	0.3	0.015	15.0	0.2	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|385802512|ref|YP_005838912.1|	-	0.015	14.7	4.5	0.084	12.3	3.2	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
IBR	PF01485.16	gi|385802512|ref|YP_005838912.1|	-	0.034	14.0	0.5	0.038	13.8	0.4	1.1	1	0	0	1	1	1	0	IBR	domain
Rubredoxin	PF00301.15	gi|385802512|ref|YP_005838912.1|	-	0.046	13.5	1.3	0.66	9.9	0.1	2.1	2	0	0	2	2	2	0	Rubredoxin
TF_Zn_Ribbon	PF08271.7	gi|385802512|ref|YP_005838912.1|	-	0.053	12.8	0.9	0.077	12.3	0.6	1.2	1	0	0	1	1	1	0	TFIIB	zinc-binding
PhnA_Zn_Ribbon	PF08274.7	gi|385802512|ref|YP_005838912.1|	-	0.062	13.0	2.9	0.14	11.9	1.3	1.8	1	1	1	2	2	2	0	PhnA	Zinc-Ribbon
Zn_Tnp_IS1	PF03811.8	gi|385802512|ref|YP_005838912.1|	-	0.081	12.4	0.6	0.13	11.7	0.4	1.4	1	0	0	1	1	1	0	InsA	N-terminal	domain
Zn_Tnp_IS1595	PF12760.2	gi|385802512|ref|YP_005838912.1|	-	0.1	12.4	0.9	0.15	11.8	0.6	1.3	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|385802512|ref|YP_005838912.1|	-	0.17	11.8	1.6	4.1	7.4	0.0	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
NOB1_Zn_bind	PF08772.6	gi|385802512|ref|YP_005838912.1|	-	0.18	11.6	1.8	0.21	11.4	0.0	1.8	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-ribbon_3	PF13248.1	gi|385802512|ref|YP_005838912.1|	-	1.7	7.9	7.0	1.1	8.6	0.3	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
Glyoxalase	PF00903.20	gi|385802513|ref|YP_005838913.1|	-	2.1e-07	30.9	0.0	2.9e-07	30.4	0.0	1.2	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.1	gi|385802513|ref|YP_005838913.1|	-	1.1e-06	28.5	0.0	2.1e-06	27.7	0.0	1.4	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_2	PF12681.2	gi|385802513|ref|YP_005838913.1|	-	1.6e-06	28.6	0.2	3.4e-06	27.6	0.0	1.6	2	0	0	2	2	2	1	Glyoxalase-like	domain
ADH_zinc_N	PF00107.21	gi|385802514|ref|YP_005838914.1|	-	2.2e-26	91.9	1.0	4e-26	91.0	0.7	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.7	gi|385802514|ref|YP_005838914.1|	-	1.5e-24	85.8	1.8	1.5e-24	85.8	1.2	2.0	2	1	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_N_assoc	PF13823.1	gi|385802514|ref|YP_005838914.1|	-	3.1e-06	26.7	0.1	1.1e-05	25.0	0.1	2.0	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-associated
ADH_zinc_N_2	PF13602.1	gi|385802514|ref|YP_005838914.1|	-	0.002	18.9	0.3	0.0046	17.8	0.1	1.7	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
AA_permease_2	PF13520.1	gi|385802515|ref|YP_005838915.1|	-	9.4e-52	175.9	45.9	1.1e-51	175.6	31.8	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|385802515|ref|YP_005838915.1|	-	1.1e-46	159.1	43.0	1.4e-46	158.8	29.8	1.0	1	0	0	1	1	1	1	Amino	acid	permease
TrkA_N	PF02254.13	gi|385802516|ref|YP_005838916.1|	-	1.7e-22	79.5	2.2	2.6e-22	78.9	0.4	1.9	2	0	0	2	2	2	1	TrkA-N	domain
TrkA_C	PF02080.16	gi|385802516|ref|YP_005838916.1|	-	1.4e-07	31.0	0.1	3e-07	29.9	0.1	1.6	1	0	0	1	1	1	1	TrkA-C	domain
NAD_binding_7	PF13241.1	gi|385802516|ref|YP_005838916.1|	-	3.1e-06	27.3	0.1	5.4e-06	26.6	0.0	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
NAD_binding_10	PF13460.1	gi|385802516|ref|YP_005838916.1|	-	2.4e-05	24.4	0.7	4.3e-05	23.5	0.5	1.4	1	0	0	1	1	1	1	NADH(P)-binding
XdhC_C	PF13478.1	gi|385802516|ref|YP_005838916.1|	-	0.00099	19.4	0.1	0.0028	17.9	0.0	1.7	1	1	1	2	2	2	1	XdhC	Rossmann	domain
DAO	PF01266.19	gi|385802516|ref|YP_005838916.1|	-	0.0016	17.4	0.1	0.002	17.1	0.1	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
F420_oxidored	PF03807.12	gi|385802516|ref|YP_005838916.1|	-	0.0022	18.3	0.0	0.0053	17.1	0.0	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Saccharop_dh	PF03435.13	gi|385802516|ref|YP_005838916.1|	-	0.0043	16.0	0.1	0.0053	15.7	0.1	1.2	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
Shikimate_DH	PF01488.15	gi|385802516|ref|YP_005838916.1|	-	0.0045	17.0	0.1	0.0056	16.7	0.1	1.3	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
NmrA	PF05368.8	gi|385802516|ref|YP_005838916.1|	-	0.0068	15.6	0.1	0.0099	15.1	0.0	1.2	1	0	0	1	1	1	1	NmrA-like	family
GFO_IDH_MocA	PF01408.17	gi|385802516|ref|YP_005838916.1|	-	0.0096	16.4	0.0	0.019	15.4	0.0	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
CPSase_L_chain	PF00289.17	gi|385802516|ref|YP_005838916.1|	-	0.013	15.6	0.4	0.036	14.1	0.1	1.8	1	1	1	2	2	2	0	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
FAD_binding_3	PF01494.14	gi|385802516|ref|YP_005838916.1|	-	0.014	14.5	0.0	0.023	13.7	0.0	1.4	1	0	0	1	1	1	0	FAD	binding	domain
Pyr_redox	PF00070.22	gi|385802516|ref|YP_005838916.1|	-	0.019	15.3	0.1	0.04	14.3	0.0	1.6	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Epimerase	PF01370.16	gi|385802516|ref|YP_005838916.1|	-	0.022	14.1	0.5	0.039	13.4	0.1	1.5	2	0	0	2	2	2	0	NAD	dependent	epimerase/dehydratase	family
3HCDH_N	PF02737.13	gi|385802516|ref|YP_005838916.1|	-	0.022	14.4	0.2	0.047	13.3	0.1	1.6	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|385802516|ref|YP_005838916.1|	-	0.034	13.3	0.0	0.049	12.7	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.9	gi|385802516|ref|YP_005838916.1|	-	0.034	13.5	0.0	0.055	12.8	0.0	1.4	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
DUF1623	PF07785.6	gi|385802516|ref|YP_005838916.1|	-	0.042	13.7	0.0	0.075	12.9	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1623)
ACT	PF01842.20	gi|385802516|ref|YP_005838916.1|	-	0.2	11.1	1.2	0.88	9.1	0.1	2.4	2	0	0	2	2	2	0	ACT	domain
MFS_1	PF07690.11	gi|385802517|ref|YP_005838917.1|	-	2.8e-48	164.4	82.4	1.2e-40	139.3	35.4	1.9	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
NADH_4Fe-4S	PF10589.4	gi|385802518|ref|YP_005838918.1|	-	1.7e-13	49.4	1.0	3.2e-13	48.5	0.2	1.9	2	0	0	2	2	2	1	NADH-ubiquinone	oxidoreductase-F	iron-sulfur	binding	region
Complex1_51K	PF01512.12	gi|385802518|ref|YP_005838918.1|	-	5.1e-10	39.2	0.0	8.1e-10	38.6	0.0	1.3	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase	51	Kd	subunit
AcetDehyd-dimer	PF09290.6	gi|385802518|ref|YP_005838918.1|	-	0.014	15.3	0.3	0.03	14.2	0.2	1.5	1	0	0	1	1	1	0	Prokaryotic	acetaldehyde	dehydrogenase,	dimerisation
Fer2_4	PF13510.1	gi|385802519|ref|YP_005838919.1|	-	1.6e-22	79.0	0.9	4.8e-22	77.5	0.6	1.8	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
NADH-G_4Fe-4S_3	PF10588.4	gi|385802519|ref|YP_005838919.1|	-	3e-14	51.9	0.5	3e-14	51.9	0.4	2.5	2	0	0	2	2	2	1	NADH-ubiquinone	oxidoreductase-G	iron-sulfur	binding	region
Fer4_7	PF12838.2	gi|385802519|ref|YP_005838919.1|	-	5.3e-09	36.3	9.6	5.3e-09	36.3	6.6	2.9	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|385802519|ref|YP_005838919.1|	-	7.4e-09	35.3	8.6	7.4e-09	35.3	5.9	2.5	2	1	0	2	2	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|385802519|ref|YP_005838919.1|	-	3.1e-08	33.1	12.0	1.2e-05	24.9	2.4	3.9	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|385802519|ref|YP_005838919.1|	-	5.3e-08	32.5	23.1	1.2e-06	28.2	9.3	3.6	2	2	2	4	4	4	2	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|385802519|ref|YP_005838919.1|	-	4.2e-07	29.2	25.1	0.00016	21.1	1.3	3.7	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|385802519|ref|YP_005838919.1|	-	5.1e-07	29.6	18.6	1.1e-06	28.6	6.1	2.7	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|385802519|ref|YP_005838919.1|	-	2.6e-06	27.9	8.0	0.0027	18.2	0.4	3.5	3	0	0	3	3	3	2	4Fe-4S	single	cluster	domain
Fer4_2	PF12797.2	gi|385802519|ref|YP_005838919.1|	-	4.5e-06	26.2	26.3	0.00012	21.8	1.6	4.2	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|385802519|ref|YP_005838919.1|	-	2.9e-05	24.2	22.1	4.3e-05	23.6	9.2	3.1	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|385802519|ref|YP_005838919.1|	-	0.00011	22.4	13.8	0.025	14.9	0.0	3.2	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|385802519|ref|YP_005838919.1|	-	0.0021	18.7	2.4	0.0021	18.7	1.7	3.7	3	2	2	5	5	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_18	PF13746.1	gi|385802519|ref|YP_005838919.1|	-	0.0065	16.8	0.8	0.0065	16.8	0.5	3.5	3	1	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|385802519|ref|YP_005838919.1|	-	0.061	13.6	1.5	0.061	13.6	1.0	4.0	4	0	0	4	4	4	0	4Fe-4S	binding	domain
RunxI	PF08504.6	gi|385802519|ref|YP_005838919.1|	-	0.23	11.9	2.9	0.61	10.5	2.0	1.6	1	0	0	1	1	1	0	Runx	inhibition	domain
Fer4_13	PF13370.1	gi|385802519|ref|YP_005838919.1|	-	1.8	9.0	23.3	0.19	12.1	2.1	3.8	4	0	0	4	4	4	0	4Fe-4S	single	cluster	domain
DiS_P_DiS	PF06750.8	gi|385802519|ref|YP_005838919.1|	-	6.2	6.7	7.1	7	6.5	0.0	2.7	2	2	0	2	2	2	0	Bacterial	Peptidase	A24	N-terminal	domain
Molybdopterin	PF00384.17	gi|385802520|ref|YP_005838920.1|	-	4.7e-78	262.8	0.0	5.7e-78	262.5	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.16	gi|385802520|ref|YP_005838920.1|	-	8.8e-32	109.2	0.1	2.3e-31	107.8	0.0	1.8	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.11	gi|385802520|ref|YP_005838920.1|	-	3.9e-12	45.7	0.0	7.6e-12	44.8	0.0	1.5	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
DUF1641	PF07849.6	gi|385802521|ref|YP_005838921.1|	-	0.00099	18.6	0.1	0.0071	15.9	0.0	2.4	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF1641)
ABC_transp_aux	PF09822.4	gi|385802521|ref|YP_005838921.1|	-	0.034	13.6	1.0	0.041	13.3	0.7	1.2	1	0	0	1	1	1	0	ABC-type	uncharacterized	transport	system
GrpE	PF01025.14	gi|385802521|ref|YP_005838921.1|	-	0.045	13.3	2.5	0.058	12.9	1.5	1.4	1	1	0	1	1	1	0	GrpE
DED	PF01335.16	gi|385802521|ref|YP_005838921.1|	-	0.046	13.8	3.6	0.15	12.1	1.8	2.4	1	1	1	2	2	2	0	Death	effector	domain
PMC2NT	PF08066.7	gi|385802521|ref|YP_005838921.1|	-	0.12	12.6	1.1	0.59	10.4	0.2	2.4	3	0	0	3	3	3	0	PMC2NT	(NUC016)	domain
CofC	PF01983.11	gi|385802521|ref|YP_005838921.1|	-	0.26	10.2	3.6	0.22	10.4	0.9	1.9	2	0	0	2	2	2	0	Guanylyl	transferase	CofC	like
DUF4350	PF14258.1	gi|385802521|ref|YP_005838921.1|	-	0.72	10.1	4.5	15	5.8	0.3	2.9	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4350)
DUF3383	PF11863.3	gi|385802521|ref|YP_005838921.1|	-	1	7.9	9.9	1.3	7.5	6.9	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3383)
Molybdopterin	PF00384.17	gi|385802522|ref|YP_005838922.1|	-	2.2e-58	198.0	0.0	6.1e-58	196.5	0.0	1.6	2	0	0	2	2	2	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.16	gi|385802522|ref|YP_005838922.1|	-	3.4e-10	39.6	0.3	8.4e-10	38.4	0.2	1.6	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.11	gi|385802522|ref|YP_005838922.1|	-	6.1e-07	29.1	0.4	1.3e-06	28.0	0.3	1.6	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
GreA_GreB	PF01272.14	gi|385802522|ref|YP_005838922.1|	-	0.07	12.8	0.2	0.34	10.6	0.3	1.9	2	0	0	2	2	2	0	Transcription	elongation	factor,	GreA/GreB,	C-term
zf-RING_3	PF14369.1	gi|532164361|ref|YP_005838923.3|	-	0.014	15.3	1.3	2.1	8.4	0.1	2.4	2	0	0	2	2	2	0	zinc-finger
zf-ribbon_3	PF13248.1	gi|532164361|ref|YP_005838923.3|	-	0.019	14.1	6.8	0.038	13.2	4.7	1.6	1	1	0	1	1	1	0	zinc-ribbon	domain
RNHCP	PF12647.2	gi|532164361|ref|YP_005838923.3|	-	0.022	14.6	1.6	0.021	14.6	1.1	1.3	1	1	0	1	1	1	0	RNHCP	domain
zf-C3HC4_3	PF13920.1	gi|532164361|ref|YP_005838923.3|	-	0.046	13.3	0.6	0.066	12.8	0.4	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
DZR	PF12773.2	gi|532164361|ref|YP_005838923.3|	-	0.071	12.9	2.4	0.8	9.5	2.0	2.0	1	1	0	1	1	1	0	Double	zinc	ribbon
HypA	PF01155.14	gi|532164361|ref|YP_005838923.3|	-	0.09	12.4	0.6	0.11	12.1	0.4	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
C1_1	PF00130.17	gi|532164361|ref|YP_005838923.3|	-	0.11	12.1	1.0	0.15	11.8	0.7	1.2	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-C3HC4_2	PF13923.1	gi|532164361|ref|YP_005838923.3|	-	0.14	12.2	1.9	0.38	10.8	1.0	1.8	1	1	1	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
DUF1272	PF06906.6	gi|532164361|ref|YP_005838923.3|	-	0.16	11.8	1.8	4.2	7.3	1.3	2.2	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
zf-dskA_traR	PF01258.12	gi|532164361|ref|YP_005838923.3|	-	0.31	10.8	3.5	8.6	6.2	0.3	2.2	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
FYDLN_acid	PF09538.5	gi|532164361|ref|YP_005838923.3|	-	0.36	11.4	3.3	1.7	9.2	2.3	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(FYDLN_acid)
zinc_ribbon_5	PF13719.1	gi|532164361|ref|YP_005838923.3|	-	1.1	8.9	3.5	4	7.0	0.2	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
TFIIS_C	PF01096.13	gi|532164361|ref|YP_005838923.3|	-	1.2	8.8	4.2	2.6	7.7	0.2	2.4	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zinc_ribbon_2	PF13240.1	gi|532164361|ref|YP_005838923.3|	-	1.3	8.6	7.2	5.9	6.5	5.0	2.0	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|532164361|ref|YP_005838923.3|	-	1.4	8.7	3.4	4.9	6.9	0.2	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF2321	PF10083.4	gi|385802524|ref|YP_005838924.1|	-	0.0047	16.4	0.1	0.025	14.0	0.0	1.9	1	1	1	2	2	2	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2321)
Epimerase	PF01370.16	gi|385802525|ref|YP_005838925.1|	-	7.3e-19	68.1	0.0	1.2e-18	67.4	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|385802525|ref|YP_005838925.1|	-	7.5e-17	60.9	0.0	9.7e-17	60.5	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.10	gi|385802525|ref|YP_005838925.1|	-	4.3e-12	45.5	0.2	6.1e-09	35.1	0.1	2.7	2	1	0	2	2	2	2	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.7	gi|385802525|ref|YP_005838925.1|	-	2.6e-11	42.9	0.0	2.3e-10	39.8	0.0	1.9	2	0	0	2	2	2	1	Male	sterility	protein
NAD_binding_10	PF13460.1	gi|385802525|ref|YP_005838925.1|	-	3.7e-11	43.3	0.0	6.4e-11	42.5	0.0	1.5	1	1	0	1	1	1	1	NADH(P)-binding
adh_short	PF00106.20	gi|385802525|ref|YP_005838925.1|	-	1.9e-06	27.9	0.7	6.6e-06	26.1	0.5	1.8	1	1	0	1	1	1	1	short	chain	dehydrogenase
RmlD_sub_bind	PF04321.12	gi|385802525|ref|YP_005838925.1|	-	0.00099	18.0	0.0	0.0029	16.5	0.0	1.7	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
NmrA	PF05368.8	gi|385802525|ref|YP_005838925.1|	-	0.0025	17.1	0.0	0.0054	16.0	0.0	1.5	2	0	0	2	2	2	1	NmrA-like	family
KR	PF08659.5	gi|385802525|ref|YP_005838925.1|	-	0.012	15.2	0.3	0.095	12.3	0.2	2.2	1	1	0	1	1	1	0	KR	domain
Saccharop_dh	PF03435.13	gi|385802525|ref|YP_005838925.1|	-	0.081	11.8	0.0	0.098	11.6	0.0	1.1	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
DUF372	PF04036.7	gi|385802526|ref|YP_005838926.1|	-	5.1e-22	77.0	0.9	6.4e-22	76.7	0.2	1.5	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF372)
DUF381	PF04038.7	gi|385802526|ref|YP_005838926.1|	-	1.1e-21	76.6	0.2	1.4e-21	76.2	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF381)
GPW_gp25	PF04965.9	gi|385802526|ref|YP_005838926.1|	-	0.0042	16.5	0.0	0.0055	16.2	0.0	1.3	1	1	0	1	1	1	1	Gene	25-like	lysozyme
Adeno_PIX	PF03955.9	gi|385802526|ref|YP_005838926.1|	-	0.12	12.8	0.1	0.17	12.4	0.1	1.3	1	0	0	1	1	1	0	Adenovirus	hexon-associated	protein	(IX)
DUF883	PF05957.8	gi|385802527|ref|YP_005838927.1|	-	0.044	14.1	4.0	0.28	11.6	0.1	2.6	1	1	2	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF883)
Apolipoprotein	PF01442.13	gi|385802527|ref|YP_005838927.1|	-	0.045	13.2	5.3	0.17	11.4	3.7	1.8	1	1	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
ZapA	PF05164.8	gi|385802527|ref|YP_005838927.1|	-	0.37	10.7	1.8	1.7	8.6	1.2	1.9	1	1	0	1	1	1	0	Cell	division	protein	ZapA
DUF4398	PF14346.1	gi|385802527|ref|YP_005838927.1|	-	1.1	9.4	5.1	6.3	6.9	3.2	2.1	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4398)
ABC_tran	PF00005.22	gi|385802528|ref|YP_005838928.1|	-	2.2e-37	128.4	0.0	4.1e-37	127.5	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
ABC_membrane	PF00664.18	gi|385802528|ref|YP_005838928.1|	-	3e-34	118.6	6.0	4.3e-34	118.1	4.1	1.2	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
AAA_21	PF13304.1	gi|385802528|ref|YP_005838928.1|	-	2.7e-06	27.5	0.0	6.8e-05	22.9	0.0	2.5	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|385802528|ref|YP_005838928.1|	-	9.1e-05	22.6	0.1	0.00057	20.0	0.1	2.2	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.7	gi|385802528|ref|YP_005838928.1|	-	0.00018	20.6	0.0	0.00032	19.8	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
DUF258	PF03193.11	gi|385802528|ref|YP_005838928.1|	-	0.00036	19.7	0.0	0.00064	18.9	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_17	PF13207.1	gi|385802528|ref|YP_005838928.1|	-	0.00041	21.1	0.0	0.0009	20.0	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|385802528|ref|YP_005838928.1|	-	0.0026	17.7	0.0	0.0066	16.4	0.0	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|385802528|ref|YP_005838928.1|	-	0.003	17.0	0.1	0.0087	15.5	0.1	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.1	gi|385802528|ref|YP_005838928.1|	-	0.0044	17.3	0.1	0.017	15.4	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
SMC_N	PF02463.14	gi|385802528|ref|YP_005838928.1|	-	0.0099	15.1	0.4	0.42	9.8	0.0	2.1	1	1	1	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA	PF00004.24	gi|385802528|ref|YP_005838928.1|	-	0.028	14.6	0.0	0.18	12.0	0.0	2.3	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.1	gi|385802528|ref|YP_005838928.1|	-	0.031	14.1	0.0	0.11	12.3	0.0	2.0	2	0	0	2	2	1	0	AAA	domain
AAA_30	PF13604.1	gi|385802528|ref|YP_005838928.1|	-	0.048	13.2	0.2	0.25	10.9	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|385802528|ref|YP_005838928.1|	-	0.063	12.6	0.1	0.14	11.6	0.1	1.7	1	1	0	1	1	1	0	AAA-like	domain
AAA_5	PF07728.9	gi|385802528|ref|YP_005838928.1|	-	0.071	12.8	0.1	0.56	9.9	0.0	2.3	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
DUF903	PF06004.7	gi|385802528|ref|YP_005838928.1|	-	0.074	12.5	0.1	0.27	10.7	0.1	2.0	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF903)
Guanylate_kin	PF00625.16	gi|385802528|ref|YP_005838928.1|	-	0.13	11.6	0.1	0.41	10.0	0.1	1.8	1	1	0	1	1	1	0	Guanylate	kinase
AAA_23	PF13476.1	gi|385802528|ref|YP_005838928.1|	-	0.15	12.3	0.2	0.36	11.1	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
DUF192	PF02643.10	gi|385802530|ref|YP_005838930.1|	-	9.4e-30	102.4	0.0	1.2e-29	102.1	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1430
GvpG	PF05120.7	gi|385802532|ref|YP_005838932.1|	-	0.00014	21.5	0.1	0.00027	20.6	0.0	1.5	1	0	0	1	1	1	1	Gas	vesicle	protein	G
SHOCT	PF09851.4	gi|385802532|ref|YP_005838932.1|	-	0.001	18.4	0.5	0.0017	17.7	0.0	1.6	2	0	0	2	2	2	1	Short	C-terminal	domain
ABC2_membrane_2	PF12679.2	gi|385802533|ref|YP_005838933.1|	-	2.2e-20	72.6	21.7	3.4e-20	72.0	15.0	1.3	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|385802533|ref|YP_005838933.1|	-	1.2e-06	27.9	29.4	1.8e-06	27.2	20.4	1.3	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.2	gi|385802534|ref|YP_005838934.1|	-	7.4e-28	97.1	15.9	1.3e-27	96.3	11.0	1.4	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|385802534|ref|YP_005838934.1|	-	9.8e-12	44.5	19.7	1.2e-11	44.2	13.4	1.3	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.2	gi|385802534|ref|YP_005838934.1|	-	1.2e-05	24.5	19.0	1.2e-05	24.5	13.2	1.4	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.1	gi|385802534|ref|YP_005838934.1|	-	0.0016	17.7	12.6	0.0039	16.5	8.6	2.0	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.19	gi|385802534|ref|YP_005838934.1|	-	0.32	10.1	21.4	0.012	14.8	10.0	1.8	2	0	0	2	2	2	0	ABC-2	type	transporter
Vma12	PF11712.3	gi|385802534|ref|YP_005838934.1|	-	6.1	6.5	8.9	3	7.5	4.4	1.8	2	0	0	2	2	2	0	Endoplasmic	reticulum-based	factor	for	assembly	of	V-ATPase
ABC_tran	PF00005.22	gi|385802535|ref|YP_005838935.1|	-	4.5e-29	101.5	0.0	1.3e-28	100.0	0.0	1.7	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.1	gi|385802535|ref|YP_005838935.1|	-	1.3e-13	51.5	0.0	2e-07	31.2	0.0	2.3	1	1	1	2	2	2	2	AAA	domain
DUF4162	PF13732.1	gi|385802535|ref|YP_005838935.1|	-	2.6e-05	24.6	0.0	5.8e-05	23.5	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_10	PF12846.2	gi|385802535|ref|YP_005838935.1|	-	3.5e-05	23.3	0.0	0.00051	19.5	0.0	2.0	1	1	1	2	2	2	1	AAA-like	domain
DUF258	PF03193.11	gi|385802535|ref|YP_005838935.1|	-	0.0032	16.6	0.0	0.0073	15.5	0.0	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function,	DUF258
SMC_N	PF02463.14	gi|385802535|ref|YP_005838935.1|	-	0.0065	15.7	0.0	3.5	6.7	0.0	2.4	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|385802535|ref|YP_005838935.1|	-	0.0088	16.3	1.4	0.012	15.9	0.1	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_29	PF13555.1	gi|385802535|ref|YP_005838935.1|	-	0.013	15.0	0.1	0.03	13.8	0.1	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Lum_binding	PF00677.12	gi|385802535|ref|YP_005838935.1|	-	0.24	11.3	2.8	6.5	6.7	0.0	2.8	3	0	0	3	3	3	0	Lumazine	binding	domain
NAD_binding_10	PF13460.1	gi|385802536|ref|YP_005838936.1|	-	2e-25	89.8	3.1	2.6e-25	89.5	2.1	1.1	1	0	0	1	1	1	1	NADH(P)-binding
NmrA	PF05368.8	gi|385802536|ref|YP_005838936.1|	-	2e-08	33.7	0.1	1e-07	31.4	0.0	2.0	1	1	0	1	1	1	1	NmrA-like	family
3Beta_HSD	PF01073.14	gi|385802536|ref|YP_005838936.1|	-	0.00012	20.8	0.0	0.00016	20.4	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Epimerase	PF01370.16	gi|385802536|ref|YP_005838936.1|	-	0.00057	19.3	0.1	0.0016	17.9	0.1	1.8	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
ADH_zinc_N	PF00107.21	gi|385802536|ref|YP_005838936.1|	-	0.0028	17.1	0.2	0.0051	16.3	0.1	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
TrkA_N	PF02254.13	gi|385802536|ref|YP_005838936.1|	-	0.075	13.0	0.2	0.21	11.5	0.1	1.8	1	0	0	1	1	1	0	TrkA-N	domain
Ion_trans_2	PF07885.11	gi|385802537|ref|YP_005838937.1|	-	3.9e-15	55.3	7.0	3.9e-15	55.3	4.8	2.4	2	1	1	3	3	3	1	Ion	channel
Ion_trans	PF00520.26	gi|385802537|ref|YP_005838937.1|	-	6.5e-10	38.5	11.0	1.5e-09	37.3	6.1	2.4	2	1	0	2	2	2	1	Ion	transport	protein
UPF0547	PF10571.4	gi|385802537|ref|YP_005838937.1|	-	0.00016	21.3	2.8	0.00031	20.3	2.0	1.5	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
zf-ribbon_3	PF13248.1	gi|385802537|ref|YP_005838937.1|	-	0.00018	20.6	0.5	0.00027	20.0	0.4	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DUF979	PF06166.7	gi|385802537|ref|YP_005838937.1|	-	0.0023	16.9	0.5	0.027	13.4	0.0	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF979)
DZR	PF12773.2	gi|385802537|ref|YP_005838937.1|	-	0.0029	17.3	0.3	0.0048	16.6	0.2	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|385802537|ref|YP_005838937.1|	-	0.0034	16.8	1.0	0.0055	16.1	0.7	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
DnaJ_CXXCXGXG	PF00684.14	gi|385802537|ref|YP_005838937.1|	-	0.088	12.8	0.3	0.13	12.3	0.2	1.2	1	0	0	1	1	1	0	DnaJ	central	domain
DUF4352	PF11611.3	gi|385802538|ref|YP_005838938.1|	-	0.12	12.4	0.0	0.2	11.8	0.0	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4352)
DUF2688	PF10892.3	gi|385802539|ref|YP_005838939.1|	-	0.027	14.1	0.0	0.061	12.9	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2688)
Marek_SORF3	PF07153.6	gi|385802539|ref|YP_005838939.1|	-	0.11	11.1	0.0	0.15	10.6	0.0	1.2	1	0	0	1	1	1	0	Marek's	disease-like	virus	SORF3	protein
zf-TFIIB	PF13453.1	gi|385802539|ref|YP_005838939.1|	-	0.12	11.5	2.1	3.3	6.9	0.2	2.4	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
APCDDC	PF14921.1	gi|385802540|ref|YP_005838940.1|	-	0.12	11.7	0.0	0.12	11.6	0.0	1.1	1	0	0	1	1	1	0	Adenomatosis	polyposis	coli	down-regulated	1
HhH-GPD	PF00730.20	gi|385802541|ref|YP_005838941.1|	-	3.5e-16	59.4	0.0	4.9e-16	58.9	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.18	gi|385802541|ref|YP_005838941.1|	-	2e-05	24.0	0.0	5.6e-05	22.6	0.0	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.1	gi|385802541|ref|YP_005838941.1|	-	0.00026	21.1	0.2	0.0012	18.9	0.1	2.0	1	1	1	2	2	2	1	Helix-hairpin-helix	domain
HHH_2	PF12826.2	gi|385802541|ref|YP_005838941.1|	-	0.00045	20.0	0.2	0.73	9.7	0.0	3.1	3	0	0	3	3	3	2	Helix-hairpin-helix	motif
HHH_8	PF14716.1	gi|385802541|ref|YP_005838941.1|	-	0.024	14.8	0.2	0.11	12.6	0.1	2.0	1	1	0	1	1	1	0	Helix-hairpin-helix	domain
DUF3701	PF12482.3	gi|385802541|ref|YP_005838941.1|	-	0.042	13.5	0.1	0.28	10.9	0.0	2.1	1	1	0	1	1	1	0	Phage	integrase	protein
Peripla_BP_2	PF01497.13	gi|385802542|ref|YP_005838942.1|	-	5.4e-17	61.7	0.0	1.2e-16	60.5	0.0	1.5	1	1	0	1	1	1	1	Periplasmic	binding	protein
Raptor_N	PF14538.1	gi|385802542|ref|YP_005838942.1|	-	0.12	12.2	0.1	0.39	10.5	0.0	1.7	2	0	0	2	2	2	0	Raptor	N-terminal	CASPase	like	domain
TFIIB	PF00382.14	gi|385802543|ref|YP_005838943.1|	-	7.8e-40	134.5	0.3	1.2e-20	73.1	0.0	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|385802543|ref|YP_005838943.1|	-	1.5e-14	53.0	4.5	1.6e-14	52.9	2.0	1.9	2	0	0	2	2	2	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.11	gi|385802543|ref|YP_005838943.1|	-	0.0014	17.9	1.1	0.83	9.0	0.0	3.9	4	0	0	4	4	4	1	Sigma-70,	region	4
TrmB	PF01978.14	gi|385802543|ref|YP_005838943.1|	-	0.037	13.7	1.5	5.5	6.7	0.1	2.6	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_AsnC-type	PF13404.1	gi|385802543|ref|YP_005838943.1|	-	0.073	12.6	2.3	0.69	9.5	0.0	3.5	3	0	0	3	3	3	0	AsnC-type	helix-turn-helix	domain
DZR	PF12773.2	gi|385802543|ref|YP_005838943.1|	-	0.37	10.6	1.9	0.94	9.3	1.4	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.6	gi|385802543|ref|YP_005838943.1|	-	1.8	8.3	5.3	0.4	10.3	1.0	1.9	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
DHquinase_I	PF01487.10	gi|385802544|ref|YP_005838944.1|	-	3.1e-49	167.6	0.0	3.6e-49	167.4	0.0	1.0	1	0	0	1	1	1	1	Type	I	3-dehydroquinase
DDE_Tnp_1	PF01609.16	gi|385802545|ref|YP_005838945.1|	-	1.5e-08	34.4	0.1	2.3e-08	33.8	0.1	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DHQS	PF01959.11	gi|385802546|ref|YP_005838946.1|	-	3.3e-147	489.8	6.9	3.7e-147	489.6	4.8	1.0	1	0	0	1	1	1	1	3-dehydroquinate	synthase	(EC	4.6.1.3)
Hint_2	PF13403.1	gi|385802546|ref|YP_005838946.1|	-	0.012	15.6	0.2	1.4	8.8	0.0	2.7	2	0	0	2	2	2	0	Hint	domain
QRPTase_C	PF01729.14	gi|385802546|ref|YP_005838946.1|	-	0.024	14.1	1.7	0.057	12.9	0.2	2.3	2	1	0	2	2	2	0	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
UPF0086	PF01868.11	gi|385802546|ref|YP_005838946.1|	-	0.035	13.7	0.1	0.1	12.2	0.1	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	UPF0086
Response_reg	PF00072.19	gi|385802546|ref|YP_005838946.1|	-	0.05	13.6	0.2	0.25	11.3	0.0	2.2	2	1	0	2	2	2	0	Response	regulator	receiver	domain
Hint	PF01079.15	gi|385802546|ref|YP_005838946.1|	-	0.08	12.1	0.0	0.69	9.0	0.0	2.2	2	0	0	2	2	2	0	Hint	module
DeoC	PF01791.4	gi|385802547|ref|YP_005838947.1|	-	7.9e-39	133.3	0.0	9.8e-39	133.0	0.0	1.1	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
AP_endonuc_2	PF01261.19	gi|385802547|ref|YP_005838947.1|	-	0.00014	21.2	0.0	0.00021	20.6	0.0	1.3	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
PEP_mutase	PF13714.1	gi|385802547|ref|YP_005838947.1|	-	0.036	13.2	0.3	0.27	10.4	0.2	2.4	1	1	1	2	2	2	0	Phosphoenolpyruvate	phosphomutase
HgmA	PF04209.8	gi|385802547|ref|YP_005838947.1|	-	0.045	12.1	0.0	0.072	11.4	0.0	1.2	1	0	0	1	1	1	0	homogentisate	1,2-dioxygenase
TMP-TENI	PF02581.12	gi|385802547|ref|YP_005838947.1|	-	0.048	12.7	1.1	1.1	8.3	0.3	2.6	3	1	0	3	3	3	0	Thiamine	monophosphate	synthase/TENI
DUF561	PF04481.7	gi|385802547|ref|YP_005838947.1|	-	0.097	11.5	0.1	0.15	10.9	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF561)
Trp_syntA	PF00290.15	gi|385802548|ref|YP_005838948.1|	-	1.2e-90	302.5	0.0	1.4e-90	302.3	0.0	1.0	1	0	0	1	1	1	1	Tryptophan	synthase	alpha	chain
PcrB	PF01884.12	gi|385802548|ref|YP_005838948.1|	-	0.00025	20.3	0.6	0.00067	18.9	0.4	1.7	2	0	0	2	2	2	1	PcrB	family
His_biosynth	PF00977.16	gi|385802548|ref|YP_005838948.1|	-	0.0027	17.0	0.2	0.0043	16.3	0.1	1.3	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
PALP	PF00291.20	gi|385802549|ref|YP_005838949.1|	-	1.7e-33	116.1	0.1	2.7e-33	115.5	0.1	1.2	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
IGPS	PF00218.16	gi|385802550|ref|YP_005838950.1|	-	2.2e-71	239.9	0.1	2.7e-71	239.6	0.0	1.0	1	0	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
FMN_dh	PF01070.13	gi|385802550|ref|YP_005838950.1|	-	2.7e-07	29.7	0.7	4.1e-07	29.1	0.5	1.4	1	1	0	1	1	1	1	FMN-dependent	dehydrogenase
NanE	PF04131.9	gi|385802550|ref|YP_005838950.1|	-	3.3e-06	26.2	0.8	4.9e-05	22.3	0.5	2.4	1	1	0	1	1	1	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
QRPTase_C	PF01729.14	gi|385802550|ref|YP_005838950.1|	-	6.9e-06	25.6	0.4	4.2e-05	23.1	0.0	2.1	2	1	0	2	2	2	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
His_biosynth	PF00977.16	gi|385802550|ref|YP_005838950.1|	-	0.00022	20.5	0.0	0.0013	18.0	0.0	2.1	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
PcrB	PF01884.12	gi|385802550|ref|YP_005838950.1|	-	0.00036	19.8	0.1	0.00094	18.4	0.0	1.6	2	0	0	2	2	2	1	PcrB	family
DeoC	PF01791.4	gi|385802550|ref|YP_005838950.1|	-	0.0013	18.0	0.5	0.41	9.9	0.0	2.5	2	1	0	2	2	2	2	DeoC/LacD	family	aldolase
DHO_dh	PF01180.16	gi|385802550|ref|YP_005838950.1|	-	0.0038	16.2	0.0	0.0075	15.2	0.0	1.5	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
Dus	PF01207.12	gi|385802550|ref|YP_005838950.1|	-	0.014	14.2	0.2	0.041	12.7	0.1	1.8	2	0	0	2	2	2	0	Dihydrouridine	synthase	(Dus)
ThiG	PF05690.9	gi|385802550|ref|YP_005838950.1|	-	0.043	12.8	0.1	0.13	11.3	0.0	1.9	2	0	0	2	2	2	0	Thiazole	biosynthesis	protein	ThiG
Trp_syntA	PF00290.15	gi|385802550|ref|YP_005838950.1|	-	0.084	11.3	0.1	0.17	10.3	0.0	1.6	2	0	0	2	2	2	0	Tryptophan	synthase	alpha	chain
DNA_binding_1	PF01035.15	gi|385802551|ref|YP_005838951.1|	-	2.4e-11	43.2	0.0	4.1e-11	42.4	0.0	1.4	1	0	0	1	1	1	1	6-O-methylguanine	DNA	methyltransferase,	DNA	binding	domain
Nuc_rec_co-act	PF08815.5	gi|385802551|ref|YP_005838951.1|	-	0.1	12.1	1.4	0.15	11.5	0.2	1.9	2	0	0	2	2	2	0	Nuclear	receptor	coactivator
Polyketide_cyc2	PF10604.4	gi|385802552|ref|YP_005838952.1|	-	2.4e-21	76.3	0.1	2.7e-21	76.2	0.1	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc	PF03364.15	gi|385802552|ref|YP_005838952.1|	-	2.7e-07	30.6	0.0	4.3e-07	29.9	0.0	1.3	1	1	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
AHSA1	PF08327.6	gi|385802552|ref|YP_005838952.1|	-	0.0068	16.5	0.1	0.0074	16.3	0.0	1.1	1	0	0	1	1	1	1	Activator	of	Hsp90	ATPase	homolog	1-like	protein
COXG	PF06240.8	gi|385802552|ref|YP_005838952.1|	-	0.071	12.7	0.1	0.42	10.2	0.0	2.4	1	1	0	1	1	1	0	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
Abi	PF02517.11	gi|385802553|ref|YP_005838953.1|	-	6.4e-13	48.6	16.1	6.2e-12	45.5	7.9	2.5	2	1	0	2	2	2	2	CAAX	protease	self-immunity
SART-1	PF03343.8	gi|385802553|ref|YP_005838953.1|	-	0.016	13.5	1.5	0.02	13.2	1.0	1.0	1	0	0	1	1	1	0	SART-1	family
CPSF100_C	PF13299.1	gi|385802553|ref|YP_005838953.1|	-	0.89	9.7	2.8	1.3	9.1	1.9	1.1	1	0	0	1	1	1	0	Cleavage	and	polyadenylation	factor	2	C-terminal
Lon_C	PF05362.8	gi|385802554|ref|YP_005838954.1|	-	2.6e-32	111.7	2.7	4.1e-32	111.1	1.9	1.3	1	0	0	1	1	1	1	Lon	protease	(S16)	C-terminal	proteolytic	domain
AAA_32	PF13654.1	gi|385802554|ref|YP_005838954.1|	-	1.8e-27	96.2	0.0	3.7e-19	68.7	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
Mg_chelatase	PF01078.16	gi|385802554|ref|YP_005838954.1|	-	3.5e-17	62.2	0.1	1e-10	41.1	0.0	2.3	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.21	gi|385802554|ref|YP_005838954.1|	-	4.5e-14	52.2	0.0	6.9e-08	32.1	0.0	2.5	2	0	0	2	2	2	2	Sigma-54	interaction	domain
MCM	PF00493.18	gi|385802554|ref|YP_005838954.1|	-	3.9e-11	42.3	0.4	0.027	13.2	0.0	3.2	3	0	0	3	3	3	3	MCM2/3/5	family
AAA_5	PF07728.9	gi|385802554|ref|YP_005838954.1|	-	1.9e-10	40.5	0.0	0.00061	19.5	0.0	2.8	3	0	0	3	3	3	2	AAA	domain	(dynein-related	subfamily)
ChlI	PF13541.1	gi|385802554|ref|YP_005838954.1|	-	6.4e-09	35.3	0.4	1.6e-08	34.0	0.3	1.7	1	0	0	1	1	1	1	Subunit	ChlI	of	Mg-chelatase
AAA	PF00004.24	gi|385802554|ref|YP_005838954.1|	-	1.9e-06	28.0	0.0	0.065	13.4	0.0	2.8	3	0	0	3	3	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activ_2	PF14532.1	gi|385802554|ref|YP_005838954.1|	-	2.4e-05	24.3	0.0	0.16	12.0	0.0	2.5	2	0	0	2	2	2	2	Sigma-54	interaction	domain
RuvB_N	PF05496.7	gi|385802554|ref|YP_005838954.1|	-	2.6e-05	23.4	0.1	0.0027	16.8	0.0	2.3	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
TIP49	PF06068.8	gi|385802554|ref|YP_005838954.1|	-	4e-05	22.5	0.0	0.068	11.8	0.0	2.4	2	0	0	2	2	2	2	TIP49	C-terminus
AAA_22	PF13401.1	gi|385802554|ref|YP_005838954.1|	-	0.00018	21.6	0.0	0.0087	16.2	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
AAA_PrkA	PF08298.6	gi|385802554|ref|YP_005838954.1|	-	0.001	17.8	0.0	0.071	11.7	0.0	2.2	2	0	0	2	2	2	1	PrkA	AAA	domain
AAA_3	PF07726.6	gi|385802554|ref|YP_005838954.1|	-	0.0012	18.4	0.1	1.2	8.7	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.1	gi|385802554|ref|YP_005838954.1|	-	0.0016	18.7	0.0	0.0062	16.8	0.0	2.1	1	0	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|385802554|ref|YP_005838954.1|	-	0.0051	16.5	0.0	0.015	15.0	0.0	1.8	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_30	PF13604.1	gi|385802554|ref|YP_005838954.1|	-	0.0059	16.2	0.0	0.022	14.3	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
T2SE	PF00437.15	gi|385802554|ref|YP_005838954.1|	-	0.006	15.5	0.3	0.099	11.5	0.0	2.7	3	0	0	3	3	3	1	Type	II/IV	secretion	system	protein
PhoH	PF02562.11	gi|385802554|ref|YP_005838954.1|	-	0.0065	15.7	0.0	0.012	14.7	0.0	1.4	1	0	0	1	1	1	1	PhoH-like	protein
AAA_2	PF07724.9	gi|385802554|ref|YP_005838954.1|	-	0.0077	16.1	0.1	1.5	8.6	0.0	2.5	2	0	0	2	2	2	1	AAA	domain	(Cdc48	subfamily)
AAA_33	PF13671.1	gi|385802554|ref|YP_005838954.1|	-	0.012	15.4	0.0	0.045	13.6	0.0	2.0	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.7	gi|385802554|ref|YP_005838954.1|	-	0.017	14.2	0.0	0.037	13.1	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
TrwB_AAD_bind	PF10412.4	gi|385802554|ref|YP_005838954.1|	-	0.021	13.4	0.0	0.031	12.9	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
DUF815	PF05673.8	gi|385802554|ref|YP_005838954.1|	-	0.023	13.6	0.0	0.043	12.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
NACHT	PF05729.7	gi|385802554|ref|YP_005838954.1|	-	0.031	13.9	0.0	0.054	13.1	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
ABC_tran	PF00005.22	gi|385802554|ref|YP_005838954.1|	-	0.034	14.4	0.0	0.084	13.1	0.0	1.6	1	0	0	1	1	1	0	ABC	transporter
IstB_IS21	PF01695.12	gi|385802554|ref|YP_005838954.1|	-	0.06	12.7	0.0	0.12	11.7	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_17	PF13207.1	gi|385802554|ref|YP_005838954.1|	-	0.084	13.6	1.4	0.59	10.9	0.0	2.7	2	1	1	3	3	2	0	AAA	domain
Parvo_NS1	PF01057.12	gi|385802554|ref|YP_005838954.1|	-	0.11	11.2	0.0	0.19	10.5	0.0	1.2	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
CTP_transf_2	PF01467.21	gi|385802555|ref|YP_005838955.1|	-	2.1e-14	53.8	0.2	4.9e-14	52.6	0.0	1.6	1	1	1	2	2	2	1	Cytidylyltransferase
YdfZ	PF14001.1	gi|385802555|ref|YP_005838955.1|	-	0.12	12.6	0.2	0.82	9.9	0.0	2.4	3	0	0	3	3	3	0	YdfZ	protein
SAM_adeno_trans	PF01887.11	gi|385802556|ref|YP_005838956.1|	-	1.7e-80	269.7	0.6	1.9e-80	269.6	0.4	1.0	1	0	0	1	1	1	1	S-adenosyl-l-methionine	hydroxide	adenosyltransferase
Cpn60_TCP1	PF00118.19	gi|385802557|ref|YP_005838957.1|	-	1.8e-135	452.2	3.2	2.1e-135	452.1	2.2	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Glycos_transf_2	PF00535.21	gi|385802558|ref|YP_005838958.1|	-	7.8e-12	45.2	0.0	1.1e-11	44.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|385802558|ref|YP_005838958.1|	-	1.1e-06	28.5	2.3	1.2e-06	28.4	0.2	2.0	2	1	0	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.4	gi|385802558|ref|YP_005838958.1|	-	0.003	16.6	0.0	0.0052	15.9	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Methyltransf_11	PF08241.7	gi|385802559|ref|YP_005838959.1|	-	2.4e-22	79.2	0.0	7.5e-22	77.6	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|385802559|ref|YP_005838959.1|	-	1.3e-15	57.2	0.0	1.9e-15	56.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|385802559|ref|YP_005838959.1|	-	4.2e-15	56.2	0.0	7.7e-15	55.4	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|385802559|ref|YP_005838959.1|	-	6e-15	55.4	0.0	2.3e-14	53.5	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|385802559|ref|YP_005838959.1|	-	1.8e-14	53.7	0.0	2.5e-14	53.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|385802559|ref|YP_005838959.1|	-	5.5e-14	51.8	0.0	8.8e-14	51.1	0.0	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.7	gi|385802559|ref|YP_005838959.1|	-	1.8e-13	50.8	0.0	3.2e-13	49.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|385802559|ref|YP_005838959.1|	-	6.2e-13	48.8	0.4	1e-12	48.0	0.2	1.6	2	1	0	2	2	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|385802559|ref|YP_005838959.1|	-	5.8e-07	29.0	0.1	1.4e-06	27.7	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	small	domain
UPF0020	PF01170.13	gi|385802559|ref|YP_005838959.1|	-	3.9e-06	26.5	0.0	4.4e-05	23.1	0.0	2.1	2	1	0	2	2	2	1	Putative	RNA	methylase	family	UPF0020
MetW	PF07021.7	gi|385802559|ref|YP_005838959.1|	-	7.4e-06	25.4	0.0	1.1e-05	24.9	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
RrnaAD	PF00398.15	gi|385802559|ref|YP_005838959.1|	-	9.9e-06	24.7	0.0	1.2e-05	24.5	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
CMAS	PF02353.15	gi|385802559|ref|YP_005838959.1|	-	1.3e-05	24.4	0.0	2.3e-05	23.6	0.0	1.3	1	1	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_9	PF08003.6	gi|385802559|ref|YP_005838959.1|	-	2.4e-05	23.1	0.0	3.7e-05	22.5	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
Methyltransf_4	PF02390.12	gi|385802559|ref|YP_005838959.1|	-	0.00034	19.7	0.0	0.00064	18.8	0.0	1.5	1	0	0	1	1	1	1	Putative	methyltransferase
Methyltransf_29	PF03141.11	gi|385802559|ref|YP_005838959.1|	-	0.0011	17.4	0.0	0.0014	17.0	0.0	1.1	1	0	0	1	1	1	1	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
PCMT	PF01135.14	gi|385802559|ref|YP_005838959.1|	-	0.0014	18.2	0.0	0.002	17.7	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_15	PF09445.5	gi|385802559|ref|YP_005838959.1|	-	0.0014	18.1	0.0	0.0021	17.6	0.0	1.3	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
tRNA_U5-meth_tr	PF05958.6	gi|385802559|ref|YP_005838959.1|	-	0.0015	17.3	0.0	0.0022	16.7	0.0	1.2	1	0	0	1	1	1	1	tRNA	(Uracil-5-)-methyltransferase
TPMT	PF05724.6	gi|385802559|ref|YP_005838959.1|	-	0.0025	17.3	0.0	0.004	16.6	0.0	1.3	1	0	0	1	1	1	1	Thiopurine	S-methyltransferase	(TPMT)
NodS	PF05401.6	gi|385802559|ref|YP_005838959.1|	-	0.0062	15.9	0.0	0.0085	15.5	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
Methyltransf_20	PF12147.3	gi|385802559|ref|YP_005838959.1|	-	0.013	14.3	0.0	0.019	13.8	0.0	1.2	1	0	0	1	1	1	0	Putative	methyltransferase
DUF938	PF06080.7	gi|385802559|ref|YP_005838959.1|	-	0.018	14.5	0.0	0.28	10.7	0.0	2.3	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF938)
FtsJ	PF01728.14	gi|385802559|ref|YP_005838959.1|	-	0.029	14.3	0.0	0.076	12.9	0.0	1.6	1	1	1	2	2	2	0	FtsJ-like	methyltransferase
Methyltransf_32	PF13679.1	gi|385802559|ref|YP_005838959.1|	-	0.076	12.7	0.0	0.14	11.8	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
TehB	PF03848.9	gi|385802559|ref|YP_005838959.1|	-	0.1	11.7	0.0	0.16	11.1	0.0	1.3	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
ACT	PF01842.20	gi|385802559|ref|YP_005838959.1|	-	0.12	11.8	0.1	0.35	10.4	0.0	1.8	2	0	0	2	2	2	0	ACT	domain
HTH_24	PF13412.1	gi|385802560|ref|YP_005838960.1|	-	2.9e-06	26.5	0.3	1.6e-05	24.1	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|385802560|ref|YP_005838960.1|	-	0.00077	19.0	0.1	0.0012	18.4	0.1	1.4	1	1	0	1	1	1	1	MarR	family
TFIIE_alpha	PF02002.12	gi|385802560|ref|YP_005838960.1|	-	0.0023	17.4	0.0	0.0036	16.7	0.0	1.3	1	1	0	1	1	1	1	TFIIE	alpha	subunit
MarR	PF01047.17	gi|385802560|ref|YP_005838960.1|	-	0.0046	16.6	0.0	0.0068	16.0	0.0	1.3	1	0	0	1	1	1	1	MarR	family
GntR	PF00392.16	gi|385802560|ref|YP_005838960.1|	-	0.0054	16.1	0.1	0.0083	15.5	0.1	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_20	PF12840.2	gi|385802560|ref|YP_005838960.1|	-	0.0063	16.3	0.3	0.024	14.4	0.1	1.8	1	1	1	2	2	2	1	Helix-turn-helix	domain
HTH_12	PF08461.5	gi|385802560|ref|YP_005838960.1|	-	0.0082	15.8	0.5	0.028	14.1	0.1	2.0	2	1	0	2	2	2	1	Ribonuclease	R	winged-helix	domain
HTH_27	PF13463.1	gi|385802560|ref|YP_005838960.1|	-	0.028	14.7	0.0	0.042	14.1	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
RNA_pol_Rpc34	PF05158.7	gi|385802560|ref|YP_005838960.1|	-	0.028	13.6	0.0	0.031	13.4	0.0	1.1	1	0	0	1	1	1	0	RNA	polymerase	Rpc34	subunit
HTH_36	PF13730.1	gi|385802560|ref|YP_005838960.1|	-	0.031	14.3	0.0	0.055	13.6	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
TrmB	PF01978.14	gi|385802560|ref|YP_005838960.1|	-	0.083	12.6	0.1	0.13	12.0	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.15	gi|385802560|ref|YP_005838960.1|	-	0.09	12.9	0.0	0.12	12.4	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
Lactamase_B	PF00753.22	gi|385802561|ref|YP_005838961.1|	-	6.7e-11	42.1	3.4	1.3e-10	41.2	2.4	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|385802561|ref|YP_005838961.1|	-	0.00022	20.8	0.1	0.00029	20.4	0.1	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
CxxCxxCC	PF03692.10	gi|385802562|ref|YP_005838962.1|	-	1.8e-12	47.5	2.5	3e-07	30.8	0.0	2.6	2	0	0	2	2	2	2	Putative	zinc-	or	iron-chelating	domain
HIPIP	PF01355.12	gi|385802562|ref|YP_005838962.1|	-	0.042	13.9	0.1	0.042	13.9	0.1	1.9	2	0	0	2	2	2	0	High	potential	iron-sulfur	protein
Lin-8	PF03353.10	gi|385802562|ref|YP_005838962.1|	-	2.9	7.1	8.4	3.8	6.6	5.8	1.2	1	0	0	1	1	1	0	Ras-mediated	vulval-induction	antagonist
TRAM	PF01938.15	gi|385802563|ref|YP_005838963.1|	-	1.9e-13	49.9	1.4	3.3e-13	49.1	1.0	1.3	1	0	0	1	1	1	1	TRAM	domain
Hexapep	PF00132.19	gi|385802563|ref|YP_005838963.1|	-	0.13	11.7	0.1	0.21	11.1	0.1	1.4	1	0	0	1	1	1	0	Bacterial	transferase	hexapeptide	(six	repeats)
Radical_SAM	PF04055.16	gi|385802564|ref|YP_005838964.1|	-	2.4e-14	53.8	0.0	6.6e-14	52.4	0.0	1.7	1	0	0	1	1	1	1	Radical	SAM	superfamily
HHH	PF00633.18	gi|385802564|ref|YP_005838964.1|	-	2.1e-05	23.9	0.0	7.1e-05	22.2	0.0	1.9	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_3	PF12836.2	gi|385802564|ref|YP_005838964.1|	-	0.00069	19.5	0.0	0.0016	18.3	0.0	1.5	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.1	gi|385802564|ref|YP_005838964.1|	-	0.0061	16.7	0.0	0.049	13.8	0.0	2.5	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
HHH_2	PF12826.2	gi|385802564|ref|YP_005838964.1|	-	0.12	12.2	0.1	0.32	10.8	0.0	1.7	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
PsbU	PF06514.6	gi|385802564|ref|YP_005838964.1|	-	0.14	12.0	0.0	0.39	10.5	0.0	1.7	1	0	0	1	1	1	0	Photosystem	II	12	kDa	extrinsic	protein	(PsbU)
DUF429	PF04250.8	gi|385802565|ref|YP_005838965.1|	-	2e-05	23.9	0.1	4.1e-05	22.9	0.0	1.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF429)
EamA	PF00892.15	gi|385802566|ref|YP_005838966.1|	-	2.6e-27	95.3	34.4	5.5e-17	61.9	6.5	2.4	2	1	0	2	2	2	2	EamA-like	transporter	family
EmrE	PF13536.1	gi|385802566|ref|YP_005838966.1|	-	2e-05	24.7	11.3	2e-05	24.7	7.8	3.4	3	1	0	3	3	3	2	Multidrug	resistance	efflux	transporter
Nuc_sug_transp	PF04142.10	gi|385802566|ref|YP_005838966.1|	-	0.00014	21.0	1.9	0.14	11.2	0.9	2.4	2	0	0	2	2	2	2	Nucleotide-sugar	transporter
TPT	PF03151.11	gi|385802566|ref|YP_005838966.1|	-	0.5	9.9	31.0	4.3	6.9	4.4	3.9	2	2	1	3	3	3	0	Triose-phosphate	Transporter	family
UPF0546	PF10639.4	gi|385802566|ref|YP_005838966.1|	-	3.3	7.5	13.2	0.22	11.3	0.9	2.8	2	1	0	2	2	2	0	Uncharacterised	protein	family	UPF0546
zf-Di19	PF05605.7	gi|385802567|ref|YP_005838967.1|	-	0.0055	16.8	0.2	0.0093	16.0	0.1	1.5	1	0	0	1	1	1	1	Drought	induced	19	protein	(Di19),	zinc-binding
DUF4468	PF14730.1	gi|385802567|ref|YP_005838967.1|	-	0.031	13.9	0.0	0.037	13.7	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4468)	with	TBP-like	fold
Cys_rich_CPXG	PF14255.1	gi|385802567|ref|YP_005838967.1|	-	0.044	13.6	0.2	0.091	12.5	0.2	1.5	1	0	0	1	1	1	0	Cysteine-rich	CPXCG
zf-ribbon_3	PF13248.1	gi|385802567|ref|YP_005838967.1|	-	0.06	12.5	0.7	0.094	11.9	0.1	1.6	2	0	0	2	2	2	0	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|385802567|ref|YP_005838967.1|	-	0.17	12.1	1.2	1.7	8.9	0.1	2.0	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
TFIIS_C	PF01096.13	gi|385802567|ref|YP_005838967.1|	-	0.2	11.3	1.2	2.5	7.8	0.1	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-CHCC	PF10276.4	gi|385802567|ref|YP_005838967.1|	-	0.39	10.6	2.4	0.62	9.9	0.3	2.0	2	0	0	2	2	2	0	Zinc-finger	domain
HSP20	PF00011.16	gi|385802568|ref|YP_005838968.1|	-	1.8e-07	30.9	0.0	3.2e-07	30.1	0.0	1.4	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
DDE_Tnp_IS66	PF03050.9	gi|385802569|ref|YP_005838969.1|	-	1.1e-53	182.1	0.1	1.1e-53	182.1	0.0	1.9	2	0	0	2	2	2	1	Transposase	IS66	family
DUF904	PF06005.7	gi|385802569|ref|YP_005838969.1|	-	8.2e-10	38.8	6.0	2.7e-09	37.1	4.2	1.8	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF904)
CASP_C	PF08172.7	gi|385802569|ref|YP_005838969.1|	-	9.3e-05	21.5	1.3	0.00019	20.5	0.9	1.4	1	0	0	1	1	1	1	CASP	C	terminal
bZIP_1	PF00170.16	gi|385802569|ref|YP_005838969.1|	-	0.00025	20.9	7.9	0.00051	19.9	5.5	1.5	1	0	0	1	1	1	1	bZIP	transcription	factor
zf-IS66	PF13005.2	gi|385802569|ref|YP_005838969.1|	-	0.00031	20.6	7.3	0.0009	19.1	5.1	1.9	1	0	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
DUF972	PF06156.8	gi|385802569|ref|YP_005838969.1|	-	0.00061	20.0	5.1	0.0011	19.2	3.1	1.7	2	0	0	2	2	1	1	Protein	of	unknown	function	(DUF972)
Striatin	PF08232.7	gi|385802569|ref|YP_005838969.1|	-	0.0019	18.5	3.0	0.004	17.4	2.1	1.5	1	0	0	1	1	1	1	Striatin	family
IncA	PF04156.9	gi|385802569|ref|YP_005838969.1|	-	0.0078	15.8	5.6	0.016	14.8	3.9	1.4	1	0	0	1	1	1	1	IncA	protein
GAS	PF13851.1	gi|385802569|ref|YP_005838969.1|	-	0.0099	15.0	4.6	0.018	14.2	3.2	1.3	1	0	0	1	1	1	1	Growth-arrest	specific	micro-tubule	binding
DivIC	PF04977.10	gi|385802569|ref|YP_005838969.1|	-	0.014	14.8	4.3	0.014	14.8	3.0	2.1	2	0	0	2	2	1	0	Septum	formation	initiator
DUF4201	PF13870.1	gi|385802569|ref|YP_005838969.1|	-	0.024	14.0	5.1	0.042	13.2	3.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
CENP-H	PF05837.7	gi|385802569|ref|YP_005838969.1|	-	0.026	14.7	2.8	0.057	13.5	1.9	1.5	1	0	0	1	1	1	0	Centromere	protein	H	(CENP-H)
Atg14	PF10186.4	gi|385802569|ref|YP_005838969.1|	-	0.033	13.1	3.7	0.066	12.1	2.6	1.4	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Transposase_mut	PF00872.13	gi|385802569|ref|YP_005838969.1|	-	0.035	12.6	0.0	0.07	11.6	0.0	1.4	1	0	0	1	1	1	0	Transposase,	Mutator	family
DUF1875	PF08961.5	gi|385802569|ref|YP_005838969.1|	-	0.049	12.9	2.7	0.093	12.0	1.8	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1875)
TMF_DNA_bd	PF12329.3	gi|385802569|ref|YP_005838969.1|	-	0.049	13.4	9.4	0.12	12.2	6.5	1.5	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
eIF-3c_N	PF05470.7	gi|385802569|ref|YP_005838969.1|	-	0.052	11.6	0.2	0.054	11.5	0.2	1.1	1	0	0	1	1	1	0	Eukaryotic	translation	initiation	factor	3	subunit	8	N-terminus
Fmp27_WPPW	PF10359.4	gi|385802569|ref|YP_005838969.1|	-	0.053	11.9	2.4	0.07	11.5	1.6	1.1	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
ADIP	PF11559.3	gi|385802569|ref|YP_005838969.1|	-	0.053	13.4	6.8	0.099	12.5	4.7	1.4	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
DDE_Tnp_IS240	PF13610.1	gi|385802569|ref|YP_005838969.1|	-	0.088	12.7	2.0	0.2	11.6	0.0	2.3	2	1	0	2	2	2	0	DDE	domain
Synaptobrevin	PF00957.16	gi|385802569|ref|YP_005838969.1|	-	0.11	12.1	2.5	0.2	11.2	1.7	1.3	1	0	0	1	1	1	0	Synaptobrevin
Sipho_Gp157	PF05565.6	gi|385802569|ref|YP_005838969.1|	-	0.15	11.6	3.9	0.25	10.9	2.7	1.3	1	0	0	1	1	1	0	Siphovirus	Gp157
TSC22	PF01166.13	gi|385802569|ref|YP_005838969.1|	-	0.2	11.6	13.9	0.087	12.7	3.7	3.2	2	1	1	3	3	3	0	TSC-22/dip/bun	family
Herpes_BLRF2	PF05812.7	gi|385802569|ref|YP_005838969.1|	-	0.22	11.3	6.6	3	7.6	0.1	2.6	1	1	1	2	2	2	0	Herpesvirus	BLRF2	protein
bZIP_2	PF07716.10	gi|385802569|ref|YP_005838969.1|	-	0.25	11.2	12.5	0.25	11.1	6.0	2.4	1	1	1	2	2	2	0	Basic	region	leucine	zipper
V_ATPase_I	PF01496.14	gi|385802569|ref|YP_005838969.1|	-	0.25	9.1	1.7	0.33	8.7	1.2	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
NYD-SP28_assoc	PF14775.1	gi|385802569|ref|YP_005838969.1|	-	0.54	9.9	11.2	3	7.6	2.5	2.8	1	1	1	2	2	2	0	Sperm	tail	C-terminal	domain
Spc24	PF08286.6	gi|385802569|ref|YP_005838969.1|	-	0.56	9.9	4.8	1.1	9.0	3.4	1.5	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
APG6	PF04111.7	gi|385802569|ref|YP_005838969.1|	-	1.1	8.1	5.2	2	7.4	3.6	1.3	1	0	0	1	1	1	0	Autophagy	protein	Apg6
SpoVR	PF04293.8	gi|385802569|ref|YP_005838969.1|	-	1.8	6.8	4.4	2.8	6.1	3.1	1.2	1	0	0	1	1	1	0	SpoVR	like	protein
EMP24_GP25L	PF01105.19	gi|385802569|ref|YP_005838969.1|	-	2	8.1	4.3	3.8	7.2	3.0	1.4	1	0	0	1	1	1	0	emp24/gp25L/p24	family/GOLD
HALZ	PF02183.13	gi|385802569|ref|YP_005838969.1|	-	3.6	7.3	10.9	0.79	9.4	4.6	2.1	2	0	0	2	2	2	0	Homeobox	associated	leucine	zipper
SlyX	PF04102.7	gi|385802569|ref|YP_005838969.1|	-	4.1	7.8	7.7	14	6.1	5.3	2.0	1	1	0	1	1	1	0	SlyX
KfrA_N	PF11740.3	gi|385802569|ref|YP_005838969.1|	-	6.4	7.2	10.7	9.5	6.6	2.2	3.2	2	1	0	2	2	2	0	Plasmid	replication	region	DNA-binding	N-term
OrfB_IS605	PF01385.14	gi|385802570|ref|YP_005838970.1|	-	3.8e-53	180.2	0.0	4.9e-53	179.8	0.0	1.1	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|385802570|ref|YP_005838970.1|	-	5.9e-20	70.6	1.2	1.4e-19	69.4	0.8	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Ribosomal_L37ae	PF01780.14	gi|385802570|ref|YP_005838970.1|	-	0.19	11.5	1.4	0.37	10.6	0.3	1.9	2	0	0	2	2	2	0	Ribosomal	L37ae	protein	family
NUDIX	PF00293.23	gi|385802571|ref|YP_005838971.1|	-	2.4e-17	62.8	0.1	3.2e-17	62.4	0.1	1.2	1	0	0	1	1	1	1	NUDIX	domain
Glyco_transf_21	PF13506.1	gi|385802573|ref|YP_005838973.1|	-	0.0071	15.6	0.0	0.022	14.0	0.0	1.7	1	1	1	2	2	2	1	Glycosyl	transferase	family	21
Aldo_ket_red	PF00248.16	gi|385802574|ref|YP_005838974.1|	-	6.6e-36	123.5	0.0	6e-25	87.6	0.0	2.1	2	0	0	2	2	2	2	Aldo/keto	reductase	family
NAD_binding_10	PF13460.1	gi|385802575|ref|YP_005838975.1|	-	2.8e-19	69.8	0.1	5.4e-19	68.9	0.1	1.4	2	0	0	2	2	2	1	NADH(P)-binding
Epimerase	PF01370.16	gi|385802575|ref|YP_005838975.1|	-	4.3e-11	42.6	0.1	6.3e-11	42.1	0.0	1.4	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|385802575|ref|YP_005838975.1|	-	1.4e-08	33.7	0.0	2.2e-08	33.1	0.0	1.3	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
TrkA_N	PF02254.13	gi|385802575|ref|YP_005838975.1|	-	1.7e-08	34.4	0.0	4e-08	33.2	0.0	1.7	1	0	0	1	1	1	1	TrkA-N	domain
ApbA	PF02558.11	gi|385802575|ref|YP_005838975.1|	-	1.8e-05	24.2	0.1	3.2e-05	23.4	0.1	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
UDPG_MGDP_dh_N	PF03721.9	gi|385802575|ref|YP_005838975.1|	-	6.6e-05	22.3	0.2	0.0003	20.2	0.1	1.9	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Pyr_redox	PF00070.22	gi|385802575|ref|YP_005838975.1|	-	0.00046	20.5	0.3	0.0009	19.5	0.2	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
RmlD_sub_bind	PF04321.12	gi|385802575|ref|YP_005838975.1|	-	0.0023	16.8	0.1	0.0046	15.8	0.1	1.5	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
DAO	PF01266.19	gi|385802575|ref|YP_005838975.1|	-	0.0058	15.5	2.3	0.0066	15.4	1.5	1.4	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
F420_oxidored	PF03807.12	gi|385802575|ref|YP_005838975.1|	-	0.0058	17.0	0.1	0.013	15.8	0.1	1.7	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Rossmann-like	PF10727.4	gi|385802575|ref|YP_005838975.1|	-	0.022	14.4	0.1	0.058	13.1	0.1	1.7	1	0	0	1	1	1	0	Rossmann-like	domain
NAD_binding_2	PF03446.10	gi|385802575|ref|YP_005838975.1|	-	0.036	13.9	0.2	0.087	12.6	0.0	1.7	1	1	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
DUF3834	PF12916.2	gi|385802576|ref|YP_005838976.1|	-	0.088	11.8	0.1	0.098	11.6	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3834)
URO-D	PF01208.12	gi|385802580|ref|YP_005838980.1|	-	0.13	11.1	0.0	0.22	10.4	0.0	1.3	1	0	0	1	1	1	0	Uroporphyrinogen	decarboxylase	(URO-D)
T2SF	PF00482.18	gi|385802581|ref|YP_005838981.1|	-	0.012	15.5	0.0	0.088	12.7	0.0	2.7	2	1	0	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	F
T2SE	PF00437.15	gi|385802582|ref|YP_005838982.1|	-	5.3e-31	107.5	0.2	8.4e-31	106.8	0.1	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_29	PF13555.1	gi|385802582|ref|YP_005838982.1|	-	0.013	15.0	0.1	0.036	13.6	0.1	1.7	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|385802582|ref|YP_005838982.1|	-	0.025	14.5	1.8	0.1	12.5	0.0	2.8	4	0	0	4	4	4	0	AAA	ATPase	domain
AAA_30	PF13604.1	gi|385802582|ref|YP_005838982.1|	-	0.036	13.6	0.1	0.095	12.2	0.1	1.7	1	0	0	1	1	1	0	AAA	domain
zf-RING_6	PF14835.1	gi|385802582|ref|YP_005838982.1|	-	0.043	13.6	0.0	0.11	12.3	0.0	1.6	1	0	0	1	1	1	0	zf-RING	of	BARD1-type	protein
ABC_tran	PF00005.22	gi|385802582|ref|YP_005838982.1|	-	0.099	12.9	0.0	0.21	11.8	0.0	1.5	1	0	0	1	1	1	0	ABC	transporter
cobW	PF02492.14	gi|385802582|ref|YP_005838982.1|	-	0.12	11.7	0.0	0.22	10.9	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
DUF4407	PF14362.1	gi|385802584|ref|YP_005838984.1|	-	4.3	6.2	14.6	1.1	8.1	8.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
A2M_N	PF01835.14	gi|385802586|ref|YP_005838986.1|	-	1.6e-07	31.4	6.5	0.0019	18.3	0.1	4.4	4	1	0	4	4	4	2	MG2	domain
FlgD_ig	PF13860.1	gi|385802586|ref|YP_005838986.1|	-	4.1e-06	26.4	1.3	4.1e-06	26.4	0.9	4.6	4	1	1	5	5	5	1	FlgD	Ig-like	domain
Trypan_PARP	PF05887.6	gi|385802586|ref|YP_005838986.1|	-	0.00098	18.9	19.5	0.0019	18.0	10.8	2.5	2	0	0	2	2	2	1	Procyclic	acidic	repetitive	protein	(PARP)
Y_Y_Y	PF07495.8	gi|385802586|ref|YP_005838986.1|	-	0.011	15.5	0.2	9.1	6.1	0.0	3.0	2	0	0	2	2	2	0	Y_Y_Y	domain
DUF3244	PF11589.3	gi|385802586|ref|YP_005838986.1|	-	0.24	11.1	12.7	4.1	7.1	0.3	5.3	4	2	1	5	5	5	0	Domain	of	unknown	function	(DUF3244)
LrgA	PF03788.9	gi|385802587|ref|YP_005838987.1|	-	0.024	14.3	2.1	0.039	13.6	1.5	1.4	1	0	0	1	1	1	0	LrgA	family
Pox_A9	PF04835.7	gi|385802587|ref|YP_005838987.1|	-	0.1	12.4	0.4	0.1	12.4	0.3	2.3	3	0	0	3	3	3	0	A9	protein	conserved	region
DUF4225	PF13988.1	gi|385802587|ref|YP_005838987.1|	-	6.5	6.1	6.1	10	5.5	4.0	1.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4225)
TetR_N	PF00440.18	gi|385802588|ref|YP_005838988.1|	-	4.8e-12	45.3	0.3	1.4e-11	43.8	0.0	2.0	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_6	PF13977.1	gi|385802588|ref|YP_005838988.1|	-	9.1e-11	41.8	1.0	2.6e-10	40.3	0.3	1.9	2	0	0	2	2	2	1	Bacterial	transcriptional	repressor
TetR_C_5	PF08360.6	gi|385802588|ref|YP_005838988.1|	-	0.0036	17.2	0.0	0.0062	16.5	0.0	1.3	1	0	0	1	1	1	1	QacR-like	protein,	C-terminal	region
CARDB	PF07705.6	gi|385802589|ref|YP_005838989.1|	-	9.7e-14	51.2	10.8	2.9e-05	24.0	0.2	5.0	4	1	0	4	4	4	4	CARDB
NPCBM_assoc	PF10633.4	gi|385802589|ref|YP_005838989.1|	-	7.1e-12	45.2	22.3	0.0076	16.2	0.9	6.1	5	2	0	5	5	5	4	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
HIG_1_N	PF04588.8	gi|385802589|ref|YP_005838989.1|	-	0.15	11.7	1.4	0.31	10.8	1.0	1.5	1	0	0	1	1	1	0	Hypoxia	induced	protein	conserved	region
DUF756	PF05506.7	gi|385802589|ref|YP_005838989.1|	-	0.26	11.8	1.8	84	3.7	0.0	4.7	4	2	1	5	5	5	0	Domain	of	unknown	function	(DUF756)
MMPL	PF03176.10	gi|385802590|ref|YP_005838990.1|	-	6.5e-40	136.8	16.5	2.6e-21	75.6	5.0	2.5	2	0	0	2	2	2	2	MMPL	family
Sterol-sensing	PF12349.3	gi|385802590|ref|YP_005838990.1|	-	1.1e-07	31.4	0.1	1.1e-07	31.4	0.1	3.0	3	1	0	3	3	3	1	Sterol-sensing	domain	of	SREBP	cleavage-activation
ACR_tran	PF00873.14	gi|385802590|ref|YP_005838990.1|	-	0.00014	19.4	14.2	0.0043	14.5	1.9	2.2	2	0	0	2	2	2	2	AcrB/AcrD/AcrF	family
Patched	PF02460.13	gi|385802590|ref|YP_005838990.1|	-	0.0025	15.8	5.2	0.0088	14.0	1.2	2.7	3	0	0	3	3	3	1	Patched	family
Usp	PF00582.21	gi|385802591|ref|YP_005838991.1|	-	6.1e-27	94.5	0.3	9.8e-27	93.8	0.2	1.3	1	0	0	1	1	1	1	Universal	stress	protein	family
Phosphodiest	PF01663.17	gi|385802592|ref|YP_005838992.1|	-	4.6e-56	190.7	0.1	5.2e-56	190.5	0.0	1.0	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Sulfatase	PF00884.18	gi|385802592|ref|YP_005838992.1|	-	0.00075	18.7	1.7	0.0034	16.6	0.5	2.4	2	1	0	2	2	2	1	Sulfatase
Metalloenzyme	PF01676.13	gi|385802592|ref|YP_005838992.1|	-	0.021	14.1	0.3	0.34	10.2	0.0	2.3	2	0	0	2	2	2	0	Metalloenzyme	superfamily
SHOCT	PF09851.4	gi|385802593|ref|YP_005838993.1|	-	8.9e-08	31.3	0.0	1.3e-07	30.8	0.0	1.3	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.6	gi|385802593|ref|YP_005838993.1|	-	0.0012	18.5	0.0	0.0018	17.9	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
Herpes_UL45	PF05473.7	gi|385802593|ref|YP_005838993.1|	-	2	7.8	6.9	8.9	5.6	0.4	2.4	2	1	0	2	2	2	0	UL45	protein
DNA_pol_B_thumb	PF14791.1	gi|385802595|ref|YP_005838995.1|	-	1.4e-24	85.5	0.0	3.5e-24	84.2	0.0	1.7	1	0	0	1	1	1	1	DNA	polymerase	beta	thumb
HHH_8	PF14716.1	gi|385802595|ref|YP_005838995.1|	-	1.9e-16	59.9	5.2	3.5e-14	52.7	0.6	4.1	3	1	1	4	4	4	1	Helix-hairpin-helix	domain
HHH_5	PF14520.1	gi|385802595|ref|YP_005838995.1|	-	1.5e-14	53.9	4.8	1.8e-10	40.8	0.4	3.2	2	0	0	2	2	2	2	Helix-hairpin-helix	domain
PHP	PF02811.14	gi|385802595|ref|YP_005838995.1|	-	1.2e-11	44.7	0.0	4.2e-11	42.9	0.0	2.0	1	1	0	1	1	1	1	PHP	domain
HHH_2	PF12826.2	gi|385802595|ref|YP_005838995.1|	-	8.3e-05	22.3	3.7	0.19	11.6	0.1	4.2	2	1	2	4	4	4	2	Helix-hairpin-helix	motif
DNA_pol_lambd_f	PF10391.4	gi|385802595|ref|YP_005838995.1|	-	0.0015	17.9	0.0	0.0085	15.6	0.0	2.4	1	1	1	2	2	2	1	Fingers	domain	of	DNA	polymerase	lambda
DNA_pol_B_palm	PF14792.1	gi|385802595|ref|YP_005838995.1|	-	0.0064	16.5	0.2	0.033	14.2	0.0	2.3	2	0	0	2	2	2	1	DNA	polymerase	beta	palm
Amidohydro_2	PF04909.9	gi|385802595|ref|YP_005838995.1|	-	0.02	14.4	1.2	0.078	12.5	0.2	2.4	2	0	0	2	2	2	0	Amidohydrolase
HHH	PF00633.18	gi|385802595|ref|YP_005838995.1|	-	0.034	13.8	2.5	0.1	12.3	0.0	3.2	3	1	1	4	4	4	0	Helix-hairpin-helix	motif
Mut7-C	PF01927.11	gi|385802596|ref|YP_005838996.1|	-	1.7e-48	164.3	0.0	2.3e-48	163.9	0.0	1.2	1	0	0	1	1	1	1	Mut7-C	RNAse	domain
Trypan_PARP	PF05887.6	gi|385802597|ref|YP_005838997.1|	-	0.016	15.0	1.6	0.03	14.1	1.1	1.5	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
DUF605	PF04652.11	gi|385802597|ref|YP_005838997.1|	-	1.2	8.4	16.2	1.6	8.0	11.2	1.1	1	0	0	1	1	1	0	Vta1	like
Virul_fac_BrkB	PF03631.10	gi|385802597|ref|YP_005838997.1|	-	6.4	6.0	13.1	0.32	10.3	4.8	1.8	1	1	1	2	2	2	0	Virulence	factor	BrkB
Abi	PF02517.11	gi|529167402|ref|YP_005838999.2|	-	8.6e-07	29.0	5.7	2.2e-05	24.4	3.9	2.3	1	1	0	1	1	1	1	CAAX	protease	self-immunity
SBF	PF01758.11	gi|385802600|ref|YP_005839000.1|	-	3.6e-29	101.4	14.6	3.6e-29	101.4	10.1	1.7	2	0	0	2	2	2	1	Sodium	Bile	acid	symporter	family
DUF3329	PF11808.3	gi|385802600|ref|YP_005839000.1|	-	0.7	10.0	2.9	50	4.0	0.1	3.6	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF3329)
DDE_Tnp_1	PF01609.16	gi|385802601|ref|YP_005839001.1|	-	1.9e-14	53.7	0.0	3.3e-14	52.9	0.0	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_4	PF13701.1	gi|385802601|ref|YP_005839001.1|	-	0.0024	16.1	0.0	0.0035	15.5	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain	group	1
DUF2015	PF09435.5	gi|385802601|ref|YP_005839001.1|	-	0.097	12.4	0.2	0.21	11.3	0.1	1.6	1	0	0	1	1	1	0	Fungal	protein	of	unknown	function	(DUF2015)
DUF650	PF04894.7	gi|385802602|ref|YP_005839002.1|	-	1.4e-97	326.4	0.0	1.7e-97	326.1	0.0	1.1	1	0	0	1	1	1	1	Archaeal	protein	of	unknown	function	(DUF650)
DUF651	PF04895.7	gi|385802602|ref|YP_005839002.1|	-	4.3e-35	119.6	0.0	6.7e-35	119.0	0.0	1.3	1	0	0	1	1	1	1	Archaeal	protein	of	unknown	function	(DUF651)
Pept_tRNA_hydro	PF01195.14	gi|385802602|ref|YP_005839002.1|	-	0.12	11.7	0.0	0.19	11.1	0.0	1.2	1	0	0	1	1	1	0	Peptidyl-tRNA	hydrolase
TFIIB	PF00382.14	gi|385802603|ref|YP_005839003.1|	-	4e-47	157.9	2.1	2.6e-25	88.0	0.1	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|385802603|ref|YP_005839003.1|	-	0.0004	19.6	0.1	0.0009	18.5	0.1	1.6	1	0	0	1	1	1	1	TFIIB	zinc-binding
HTH_23	PF13384.1	gi|385802603|ref|YP_005839003.1|	-	0.0081	15.7	0.4	0.62	9.7	0.0	3.4	3	0	0	3	3	3	1	Homeodomain-like	domain
Sigma70_r4	PF04545.11	gi|385802603|ref|YP_005839003.1|	-	0.025	13.8	1.0	0.31	10.3	0.0	3.1	2	1	1	3	3	3	0	Sigma-70,	region	4
HTH_17	PF12728.2	gi|385802603|ref|YP_005839003.1|	-	0.059	13.6	0.7	0.89	9.8	0.0	2.9	3	0	0	3	3	3	0	Helix-turn-helix	domain
Cyclin_N	PF00134.18	gi|385802603|ref|YP_005839003.1|	-	0.13	11.8	0.0	0.37	10.3	0.0	1.8	2	0	0	2	2	2	0	Cyclin,	N-terminal	domain
RVT_3	PF13456.1	gi|385802604|ref|YP_005839004.1|	-	4.1e-22	77.7	0.0	5.8e-22	77.2	0.0	1.2	1	0	0	1	1	1	1	Reverse	transcriptase-like
RNase_H	PF00075.19	gi|385802604|ref|YP_005839004.1|	-	5.8e-15	55.8	0.0	9.4e-15	55.1	0.0	1.3	1	0	0	1	1	1	1	RNase	H
Phage_int_SAM_4	PF13495.1	gi|385802605|ref|YP_005839005.1|	-	0.007	16.6	0.1	0.013	15.8	0.0	1.4	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
PadR	PF03551.9	gi|385802606|ref|YP_005839006.1|	-	1.9e-17	62.8	0.3	2.7e-17	62.2	0.2	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.1	gi|385802606|ref|YP_005839006.1|	-	5.6e-07	29.7	0.1	1.3e-06	28.5	0.0	1.6	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.1	gi|385802606|ref|YP_005839006.1|	-	0.0037	17.0	0.1	0.0065	16.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF1495	PF07381.6	gi|385802606|ref|YP_005839006.1|	-	0.0059	16.2	0.1	0.0089	15.6	0.0	1.3	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
DUF4364	PF14277.1	gi|385802606|ref|YP_005839006.1|	-	0.039	13.5	0.0	0.052	13.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
Rio2_N	PF09202.6	gi|385802606|ref|YP_005839006.1|	-	0.058	13.4	0.1	0.1	12.6	0.1	1.4	1	0	0	1	1	1	0	Rio2,	N-terminal
FUR	PF01475.14	gi|385802606|ref|YP_005839006.1|	-	0.079	12.8	0.0	0.089	12.7	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
Pyrophosphatase	PF00719.14	gi|385802607|ref|YP_005839007.1|	-	5.2e-54	181.9	0.8	6e-54	181.7	0.6	1.0	1	0	0	1	1	1	1	Inorganic	pyrophosphatase
Rhomboid	PF01694.17	gi|385802609|ref|YP_005839009.1|	-	5.2e-27	94.6	17.7	5.2e-27	94.6	12.3	1.6	2	0	0	2	2	2	1	Rhomboid	family
zf-AN1	PF01428.11	gi|385802609|ref|YP_005839009.1|	-	1.3e-13	50.5	6.9	1.8e-13	50.1	4.8	1.2	1	0	0	1	1	1	1	AN1-like	Zinc	finger
DUF1751	PF08551.5	gi|385802609|ref|YP_005839009.1|	-	0.00043	20.5	1.3	0.00074	19.7	0.4	1.8	1	1	0	1	1	1	1	Eukaryotic	integral	membrane	protein	(DUF1751)
zf-C2H2_6	PF13912.1	gi|385802609|ref|YP_005839009.1|	-	3.6	7.6	6.7	5.2	7.1	1.4	2.4	2	0	0	2	2	2	0	C2H2-type	zinc	finger
Zn-ribbon_8	PF09723.5	gi|385802609|ref|YP_005839009.1|	-	8.2	6.4	7.3	7.8	6.5	1.7	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
Endonuclease_5	PF04493.9	gi|385802610|ref|YP_005839010.1|	-	2.7e-50	170.5	0.0	3.6e-50	170.1	0.0	1.1	1	0	0	1	1	1	1	Endonuclease	V
DUF99	PF01949.11	gi|385802610|ref|YP_005839010.1|	-	0.047	12.7	0.3	4.3	6.3	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF99
adh_short	PF00106.20	gi|385802611|ref|YP_005839011.1|	-	3.3e-32	111.7	0.9	6.1e-32	110.8	0.1	1.7	2	0	0	2	2	2	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|385802611|ref|YP_005839011.1|	-	1.1e-19	71.1	0.0	1.5e-19	70.7	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|385802611|ref|YP_005839011.1|	-	7e-14	51.8	0.0	1.2e-13	51.1	0.0	1.4	1	0	0	1	1	1	1	KR	domain
DUF1776	PF08643.5	gi|385802611|ref|YP_005839011.1|	-	4.2e-09	35.9	0.0	6.1e-09	35.4	0.0	1.1	1	0	0	1	1	1	1	Fungal	family	of	unknown	function	(DUF1776)
NAD_binding_10	PF13460.1	gi|385802611|ref|YP_005839011.1|	-	1.2e-07	31.9	0.4	4.7e-07	29.9	0.3	2.0	1	1	0	1	1	1	1	NADH(P)-binding
Epimerase	PF01370.16	gi|385802611|ref|YP_005839011.1|	-	0.00013	21.4	0.0	0.00068	19.1	0.0	2.2	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Eno-Rase_NADH_b	PF12242.3	gi|385802611|ref|YP_005839011.1|	-	0.0055	16.4	0.0	0.016	14.9	0.0	1.7	1	0	0	1	1	1	1	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
RmlD_sub_bind	PF04321.12	gi|385802611|ref|YP_005839011.1|	-	0.011	14.7	0.1	0.025	13.4	0.0	1.7	2	0	0	2	2	2	0	RmlD	substrate	binding	domain
NmrA	PF05368.8	gi|385802611|ref|YP_005839011.1|	-	0.038	13.2	0.0	0.084	12.1	0.0	1.6	2	0	0	2	2	2	0	NmrA-like	family
TrkA_N	PF02254.13	gi|385802611|ref|YP_005839011.1|	-	0.059	13.3	0.0	0.15	12.0	0.0	1.7	1	0	0	1	1	1	0	TrkA-N	domain
ApbA	PF02558.11	gi|385802611|ref|YP_005839011.1|	-	0.13	11.7	0.0	0.22	10.9	0.0	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
ArsA_ATPase	PF02374.10	gi|385802612|ref|YP_005839012.1|	-	8.8e-81	271.2	0.0	4.7e-53	180.2	0.0	2.8	2	1	0	2	2	2	2	Anion-transporting	ATPase
CbiA	PF01656.18	gi|385802612|ref|YP_005839012.1|	-	1.8e-11	43.7	0.0	6.4e-11	42.0	0.0	2.0	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|385802612|ref|YP_005839012.1|	-	2.3e-06	27.6	0.2	0.0032	17.4	0.0	2.7	3	0	0	3	3	3	2	AAA	domain
AAA_25	PF13481.1	gi|385802612|ref|YP_005839012.1|	-	0.00032	20.1	0.4	0.016	14.6	0.0	3.0	3	0	0	3	3	3	1	AAA	domain
SRP54	PF00448.17	gi|385802612|ref|YP_005839012.1|	-	0.00069	19.1	0.2	0.26	10.6	0.3	2.5	2	0	0	2	2	2	2	SRP54-type	protein,	GTPase	domain
Zeta_toxin	PF06414.7	gi|385802612|ref|YP_005839012.1|	-	0.0015	17.7	0.2	0.021	13.9	0.0	2.2	2	0	0	2	2	2	1	Zeta	toxin
YhjQ	PF06564.7	gi|385802612|ref|YP_005839012.1|	-	0.0057	16.0	0.0	0.011	15.1	0.0	1.4	1	0	0	1	1	1	1	YhjQ	protein
IstB_IS21	PF01695.12	gi|385802612|ref|YP_005839012.1|	-	0.02	14.2	0.3	0.042	13.2	0.2	1.5	1	1	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_10	PF12846.2	gi|385802612|ref|YP_005839012.1|	-	0.021	14.2	0.3	0.059	12.8	0.2	1.8	1	1	0	1	1	1	0	AAA-like	domain
Fer4_NifH	PF00142.13	gi|385802612|ref|YP_005839012.1|	-	0.021	13.9	0.1	0.035	13.3	0.0	1.3	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
Aminotran_1_2	PF00155.16	gi|385802613|ref|YP_005839013.1|	-	5.6e-51	173.5	0.0	6.7e-51	173.3	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.14	gi|385802613|ref|YP_005839013.1|	-	2.5e-05	23.2	3.7	0.00018	20.4	1.2	2.7	2	1	0	2	2	2	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.16	gi|385802613|ref|YP_005839013.1|	-	0.0011	18.1	0.1	0.0016	17.6	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
Cys_Met_Meta_PP	PF01053.15	gi|385802613|ref|YP_005839013.1|	-	0.046	12.0	0.1	0.064	11.5	0.1	1.1	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
CinA	PF02464.12	gi|385802614|ref|YP_005839014.1|	-	1.4e-54	183.7	0.4	1.6e-54	183.5	0.2	1.0	1	0	0	1	1	1	1	Competence-damaged	protein
DUF457	PF04307.9	gi|385802615|ref|YP_005839015.1|	-	3.2e-17	62.3	12.2	5.7e-17	61.4	8.5	1.5	1	1	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
Zn_dep_PLPC	PF00882.13	gi|385802615|ref|YP_005839015.1|	-	0.0018	17.9	0.1	0.0033	17.0	0.1	1.4	1	1	0	1	1	1	1	Zinc	dependent	phospholipase	C
PHP_C	PF13263.1	gi|385802616|ref|YP_005839016.1|	-	5.2e-13	48.2	0.0	1.1e-12	47.2	0.0	1.6	1	0	0	1	1	1	1	PHP-associated
Spt5-NGN	PF03439.8	gi|385802617|ref|YP_005839017.1|	-	2.1e-23	81.8	0.0	3.5e-23	81.1	0.0	1.4	1	0	0	1	1	1	1	Early	transcription	elongation	factor	of	RNA	pol	II,	NGN	section
KOW	PF00467.24	gi|385802617|ref|YP_005839017.1|	-	1.3e-07	30.9	1.8	2e-07	30.4	0.1	2.2	3	0	0	3	3	3	1	KOW	motif
NusG	PF02357.14	gi|385802617|ref|YP_005839017.1|	-	0.0014	18.8	0.0	0.035	14.3	0.0	2.4	1	1	0	1	1	1	1	Transcription	termination	factor	nusG
DUF1469	PF07332.6	gi|385802618|ref|YP_005839018.1|	-	0.067	12.9	3.0	0.081	12.6	2.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
Tubulin	PF00091.20	gi|385802619|ref|YP_005839019.1|	-	1.1e-35	123.4	1.0	2.9e-35	122.0	0.7	1.7	1	1	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
FtsZ_C	PF12327.3	gi|385802619|ref|YP_005839019.1|	-	1.1e-35	121.5	3.2	1.7e-35	120.9	0.9	2.4	2	0	0	2	2	2	1	FtsZ	family,	C-terminal	domain
EF-hand_1	PF00036.27	gi|385802619|ref|YP_005839019.1|	-	0.04	13.2	0.1	3	7.3	0.0	2.9	2	0	0	2	2	2	0	EF	hand
EF-hand_6	PF13405.1	gi|385802619|ref|YP_005839019.1|	-	0.16	11.9	0.2	40	4.4	0.0	3.0	3	0	0	3	3	3	0	EF-hand	domain
tRNA_deacylase	PF04414.7	gi|385802620|ref|YP_005839020.1|	-	8.7e-65	217.8	0.0	1.4e-64	217.1	0.0	1.3	1	0	0	1	1	1	1	D-aminoacyl-tRNA	deacylase
Shikimate_dh_N	PF08501.6	gi|385802621|ref|YP_005839021.1|	-	2.1e-26	91.8	0.0	4.7e-26	90.6	0.0	1.6	1	0	0	1	1	1	1	Shikimate	dehydrogenase	substrate	binding	domain
Shikimate_DH	PF01488.15	gi|385802621|ref|YP_005839021.1|	-	1.1e-12	48.1	0.2	3.1e-12	46.7	0.0	1.7	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
FAD_binding_2	PF00890.19	gi|385802621|ref|YP_005839021.1|	-	5.1e-06	25.6	2.6	6.9e-06	25.1	1.8	1.2	1	0	0	1	1	1	1	FAD	binding	domain
F420_oxidored	PF03807.12	gi|385802621|ref|YP_005839021.1|	-	0.001	19.4	1.0	0.0021	18.4	0.7	1.4	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
IlvN	PF07991.7	gi|385802621|ref|YP_005839021.1|	-	0.0011	18.3	0.4	0.0036	16.6	0.1	1.9	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
Thi4	PF01946.12	gi|385802621|ref|YP_005839021.1|	-	0.0013	17.8	0.1	0.002	17.2	0.1	1.3	1	0	0	1	1	1	1	Thi4	family
THF_DHG_CYH_C	PF02882.14	gi|385802621|ref|YP_005839021.1|	-	0.0022	17.1	0.0	0.012	14.6	0.0	2.0	2	0	0	2	2	2	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
Pyr_redox_2	PF07992.9	gi|385802621|ref|YP_005839021.1|	-	0.003	17.4	0.1	0.0047	16.8	0.1	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.11	gi|385802621|ref|YP_005839021.1|	-	0.0039	16.6	0.4	0.0065	15.9	0.3	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
NAD_Gly3P_dh_N	PF01210.18	gi|385802621|ref|YP_005839021.1|	-	0.012	15.3	0.2	0.025	14.3	0.2	1.6	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
NAD_binding_7	PF13241.1	gi|385802621|ref|YP_005839021.1|	-	0.014	15.6	0.0	0.023	14.9	0.0	1.4	1	0	0	1	1	1	0	Putative	NAD(P)-binding
GIDA	PF01134.17	gi|385802621|ref|YP_005839021.1|	-	0.015	14.2	6.2	0.021	13.7	4.3	1.2	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
3HCDH_N	PF02737.13	gi|385802621|ref|YP_005839021.1|	-	0.016	14.8	0.8	0.023	14.3	0.5	1.2	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
FAD_binding_3	PF01494.14	gi|385802621|ref|YP_005839021.1|	-	0.019	14.0	1.1	0.028	13.4	0.7	1.2	1	0	0	1	1	1	0	FAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|385802621|ref|YP_005839021.1|	-	0.028	13.5	0.1	0.042	12.9	0.1	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
AdoHcyase_NAD	PF00670.16	gi|385802621|ref|YP_005839021.1|	-	0.045	13.5	0.4	0.075	12.8	0.3	1.3	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
HI0933_like	PF03486.9	gi|385802621|ref|YP_005839021.1|	-	0.08	11.4	1.8	0.11	10.9	1.3	1.2	1	0	0	1	1	1	0	HI0933-like	protein
ThiF	PF00899.16	gi|385802621|ref|YP_005839021.1|	-	0.083	12.7	0.5	0.32	10.8	0.4	1.9	2	0	0	2	2	2	0	ThiF	family
NAD_binding_10	PF13460.1	gi|385802621|ref|YP_005839021.1|	-	0.13	12.2	2.7	0.17	11.8	1.1	1.7	2	0	0	2	2	2	0	NADH(P)-binding
Pyr_redox	PF00070.22	gi|385802621|ref|YP_005839021.1|	-	0.18	12.2	2.0	0.63	10.4	0.8	2.2	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|385802621|ref|YP_005839021.1|	-	0.2	11.7	4.3	0.43	10.6	3.0	1.6	1	1	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.19	gi|385802621|ref|YP_005839021.1|	-	0.24	10.2	5.6	0.34	9.7	3.5	1.5	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.2	gi|385802621|ref|YP_005839021.1|	-	0.25	10.3	5.9	0.39	9.7	4.1	1.3	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
HHH_5	PF14520.1	gi|385802622|ref|YP_005839022.1|	-	3.5e-05	23.8	0.2	6.2e-05	23.0	0.1	1.4	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
DUF4332	PF14229.1	gi|385802622|ref|YP_005839022.1|	-	0.0024	17.8	0.1	0.0062	16.4	0.0	1.7	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4332)
Cdd1	PF11731.3	gi|385802622|ref|YP_005839022.1|	-	0.0058	16.5	0.0	0.01	15.7	0.0	1.4	1	0	0	1	1	1	1	Pathogenicity	locus
Aminotran_4	PF01063.14	gi|385802623|ref|YP_005839023.1|	-	2e-49	168.1	0.0	2.5e-49	167.8	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class	IV
Rieske	PF00355.21	gi|385802624|ref|YP_005839024.1|	-	1.8e-08	33.8	0.0	2.5e-08	33.3	0.0	1.2	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.1	gi|385802624|ref|YP_005839024.1|	-	0.01	15.5	0.0	0.013	15.2	0.0	1.2	1	0	0	1	1	1	0	Rieske-like	[2Fe-2S]	domain
GtrA	PF04138.9	gi|385802625|ref|YP_005839025.1|	-	1.1e-14	54.3	4.0	1.6e-14	53.8	2.8	1.3	1	0	0	1	1	1	1	GtrA-like	protein
Glycos_transf_2	PF00535.21	gi|385802626|ref|YP_005839026.1|	-	0.0026	17.4	0.0	0.061	12.9	0.0	2.2	2	0	0	2	2	2	2	Glycosyl	transferase	family	2
DUF2298	PF10060.4	gi|385802627|ref|YP_005839027.1|	-	3.3e-141	471.3	19.2	4.3e-141	470.9	13.3	1.1	1	0	0	1	1	1	1	Uncharacterized	membrane	protein	(DUF2298)
Ibs_toxin	PF13956.1	gi|385802627|ref|YP_005839027.1|	-	0.019	14.7	0.4	0.099	12.4	0.3	2.3	1	0	0	1	1	1	0	Toxin	Ibs,	type	I	toxin-antitoxin	system
ATP_synth_reg	PF14960.1	gi|385802627|ref|YP_005839027.1|	-	0.16	11.1	1.7	0.45	9.7	0.1	2.4	2	0	0	2	2	2	0	ATP	synthase	regulation
COX14	PF14880.1	gi|385802627|ref|YP_005839027.1|	-	1.1	8.8	6.6	1.3	8.7	0.5	3.0	3	0	0	3	3	3	0	Cytochrome	oxidase	c	assembly
Ribosomal_L44	PF00935.14	gi|385802629|ref|YP_005839029.1|	-	1.3e-25	89.1	3.9	1.6e-25	88.8	2.7	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L44
Terminase_GpA	PF05876.7	gi|385802629|ref|YP_005839029.1|	-	0.002	16.5	0.4	0.0025	16.2	0.3	1.1	1	0	0	1	1	1	1	Phage	terminase	large	subunit	(GpA)
zf-ribbon_3	PF13248.1	gi|385802629|ref|YP_005839029.1|	-	0.016	14.3	0.5	3.3	7.0	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.2	gi|385802629|ref|YP_005839029.1|	-	0.019	14.7	2.0	0.055	13.2	1.4	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
DUF2296	PF10058.4	gi|385802629|ref|YP_005839029.1|	-	0.026	14.2	1.0	2.1	8.1	0.0	2.2	2	0	0	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
zf-Mss51	PF13824.1	gi|385802629|ref|YP_005839029.1|	-	0.036	13.9	0.4	0.067	13.0	0.2	1.5	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Lar_restr_allev	PF14354.1	gi|385802629|ref|YP_005839029.1|	-	0.045	14.0	2.7	1	9.6	1.8	2.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
Zn_Tnp_IS1595	PF12760.2	gi|385802629|ref|YP_005839029.1|	-	0.091	12.5	1.4	4.6	7.1	0.1	2.3	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|385802629|ref|YP_005839029.1|	-	0.17	11.4	4.5	2.2	7.8	0.8	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Acetone_carb_G	PF08882.6	gi|385802629|ref|YP_005839029.1|	-	0.18	11.8	0.6	6.1	6.9	0.2	2.1	1	1	1	2	2	2	0	Acetone	carboxylase	gamma	subunit
Tnp_zf-ribbon_2	PF13842.1	gi|385802629|ref|YP_005839029.1|	-	0.21	12.0	2.1	5.4	7.5	0.1	2.4	2	0	0	2	2	2	0	DDE_Tnp_1-like	zinc-ribbon
Nudix_N_2	PF14803.1	gi|385802629|ref|YP_005839029.1|	-	0.26	11.0	3.1	7.9	6.2	0.2	2.5	2	1	0	2	2	2	0	Nudix	N-terminal
zf-B_box	PF00643.19	gi|385802629|ref|YP_005839029.1|	-	3.3	7.6	9.1	8.9	6.3	0.1	2.1	2	0	0	2	2	2	0	B-box	zinc	finger
Ribosomal_S27e	PF01667.12	gi|385802630|ref|YP_005839030.1|	-	6.8e-20	70.3	0.7	7.9e-20	70.1	0.5	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S27
Zn-ribbon_8	PF09723.5	gi|385802630|ref|YP_005839030.1|	-	0.011	15.6	0.3	0.023	14.6	0.2	1.5	1	0	0	1	1	1	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.1	gi|385802630|ref|YP_005839030.1|	-	0.046	12.9	2.6	0.089	12.0	1.8	1.5	1	1	0	1	1	1	0	zinc-ribbon	domain
RNA_POL_M_15KD	PF02150.11	gi|385802630|ref|YP_005839030.1|	-	0.07	12.8	0.9	0.17	11.6	0.6	1.6	1	1	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
Herpes_UL49_1	PF03117.9	gi|385802630|ref|YP_005839030.1|	-	0.091	11.8	0.0	0.091	11.8	0.0	1.1	1	0	0	1	1	1	0	UL49	family
Baculo_ME53	PF06061.6	gi|385802630|ref|YP_005839030.1|	-	0.12	11.3	0.2	0.12	11.3	0.1	1.1	1	0	0	1	1	1	0	Baculoviridae	ME53
Ribosomal_L37ae	PF01780.14	gi|385802630|ref|YP_005839030.1|	-	0.13	12.0	0.4	0.18	11.6	0.3	1.3	1	1	0	1	1	1	0	Ribosomal	L37ae	protein	family
Elf1	PF05129.8	gi|385802630|ref|YP_005839030.1|	-	0.2	11.3	1.9	0.42	10.3	1.3	1.5	1	1	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
TF_Zn_Ribbon	PF08271.7	gi|385802630|ref|YP_005839030.1|	-	0.33	10.2	3.7	0.1	11.9	0.6	1.7	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-IS66	PF13005.2	gi|385802630|ref|YP_005839030.1|	-	0.54	10.2	2.1	13	5.8	0.2	2.3	2	1	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Prok-RING_1	PF14446.1	gi|385802630|ref|YP_005839030.1|	-	0.66	9.7	2.9	1.2	8.9	2.0	1.4	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
TFIIS_C	PF01096.13	gi|385802630|ref|YP_005839030.1|	-	0.67	9.6	4.1	17	5.1	2.8	2.2	1	1	0	1	1	1	0	Transcription	factor	S-II	(TFIIS)
zf-NADH-PPase	PF09297.6	gi|385802630|ref|YP_005839030.1|	-	1.4	8.5	4.1	4.3	6.9	0.2	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
DUF3797	PF12677.2	gi|385802630|ref|YP_005839030.1|	-	1.6	8.4	5.1	2.2	7.9	1.9	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
zinc_ribbon_4	PF13717.1	gi|385802630|ref|YP_005839030.1|	-	1.9	8.2	4.7	46	3.8	3.3	2.3	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|385802630|ref|YP_005839030.1|	-	2.2	7.9	4.6	40	3.8	3.2	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
EIF_2_alpha	PF07541.7	gi|385802631|ref|YP_005839031.1|	-	7.7e-28	96.5	0.0	1.4e-27	95.6	0.0	1.4	1	0	0	1	1	1	1	Eukaryotic	translation	initiation	factor	2	alpha	subunit
S1	PF00575.18	gi|385802631|ref|YP_005839031.1|	-	1.8e-15	56.7	1.3	1.1e-14	54.2	0.2	2.2	2	0	0	2	2	2	1	S1	RNA	binding	domain
Collagen_bind	PF05737.7	gi|385802631|ref|YP_005839031.1|	-	0.016	15.3	0.3	0.028	14.5	0.2	1.3	1	0	0	1	1	1	0	Collagen	binding	domain
DUF1804	PF08822.6	gi|385802631|ref|YP_005839031.1|	-	0.079	12.6	0.6	1	9.0	0.6	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1804)
CsrA	PF02599.11	gi|385802631|ref|YP_005839031.1|	-	0.11	12.2	0.2	0.5	10.1	0.0	2.1	2	0	0	2	2	2	0	Global	regulator	protein	family
IFT46_B_C	PF12317.3	gi|385802631|ref|YP_005839031.1|	-	0.34	10.2	2.0	0.8	9.0	1.1	1.8	1	1	1	2	2	2	0	Intraflagellar	transport	complex	B	protein	46	C	terminal
Nop10p	PF04135.7	gi|385802632|ref|YP_005839032.1|	-	2.4e-24	84.8	0.3	2.7e-24	84.6	0.2	1.0	1	0	0	1	1	1	1	Nucleolar	RNA-binding	protein,	Nop10p	family
Foamy_BEL	PF03274.9	gi|385802632|ref|YP_005839032.1|	-	0.11	11.7	0.1	0.11	11.7	0.0	1.0	1	0	0	1	1	1	0	Foamy	virus	BEL	1/2	protein
PAC2	PF09754.4	gi|385802633|ref|YP_005839033.1|	-	7.5e-50	169.8	0.2	9.5e-50	169.4	0.1	1.0	1	0	0	1	1	1	1	PAC2	family
PhzC-PhzF	PF02567.11	gi|385802635|ref|YP_005839035.1|	-	3.3e-58	197.1	0.0	3.9e-58	196.8	0.0	1.1	1	0	0	1	1	1	1	Phenazine	biosynthesis-like	protein
DAP_epimerase	PF01678.14	gi|385802635|ref|YP_005839035.1|	-	0.00026	20.8	0.2	0.0011	18.8	0.0	2.1	2	1	1	3	3	3	1	Diaminopimelate	epimerase
Pro_racemase	PF05544.6	gi|385802635|ref|YP_005839035.1|	-	0.0024	16.7	0.0	0.0032	16.3	0.0	1.2	1	0	0	1	1	1	1	Proline	racemase
Pribosyltran	PF00156.22	gi|385802636|ref|YP_005839036.1|	-	1.2e-21	76.6	0.0	2e-21	76.0	0.0	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.1	gi|385802636|ref|YP_005839036.1|	-	0.038	13.2	0.0	0.056	12.6	0.0	1.2	1	0	0	1	1	1	0	Uracil	phosphoribosyltransferase
Mem_trans	PF03547.13	gi|385802637|ref|YP_005839037.1|	-	1.1e-27	96.3	28.5	2.2e-14	52.6	4.6	2.0	1	1	1	2	2	2	2	Membrane	transport	protein
PNP_UDP_1	PF01048.15	gi|385802638|ref|YP_005839038.1|	-	8.7e-41	139.4	0.1	1e-40	139.1	0.1	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
ScpA_ScpB	PF02616.9	gi|385802639|ref|YP_005839039.1|	-	3.6e-22	79.1	0.5	3.8e-14	52.8	0.0	2.7	2	1	0	2	2	2	2	ScpA/B	protein
Rnk_N	PF14760.1	gi|385802639|ref|YP_005839039.1|	-	0.11	12.5	2.7	3.2	7.8	0.0	2.9	2	0	0	2	2	2	0	Rnk	N-terminus
SMC_N	PF02463.14	gi|385802640|ref|YP_005839040.1|	-	9.2e-59	198.3	15.7	1.7e-58	197.4	10.9	1.6	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
SMC_hinge	PF06470.8	gi|385802640|ref|YP_005839040.1|	-	8.6e-31	106.4	0.0	5.8e-30	103.7	0.0	2.6	2	0	0	2	2	1	1	SMC	proteins	Flexible	Hinge	Domain
AAA_23	PF13476.1	gi|385802640|ref|YP_005839040.1|	-	7.5e-16	59.0	1.3	7.5e-16	59.0	0.9	7.4	2	2	1	3	3	1	1	AAA	domain
AAA_21	PF13304.1	gi|385802640|ref|YP_005839040.1|	-	2.5e-14	53.9	13.1	5.7e-09	36.3	0.6	4.0	3	1	0	3	3	3	2	AAA	domain
Reo_sigmaC	PF04582.7	gi|385802640|ref|YP_005839040.1|	-	4.3e-11	42.5	44.4	0.0021	17.2	2.9	6.2	2	2	4	6	6	6	6	Reovirus	sigma	C	capsid	protein
DUF3584	PF12128.3	gi|385802640|ref|YP_005839040.1|	-	1.4e-10	39.2	109.3	1.5e-05	22.6	6.2	5.3	2	2	3	5	5	5	4	Protein	of	unknown	function	(DUF3584)
IncA	PF04156.9	gi|385802640|ref|YP_005839040.1|	-	6.9e-10	38.8	126.9	0.0011	18.5	9.3	8.4	3	2	5	8	8	8	5	IncA	protein
AAA_13	PF13166.1	gi|385802640|ref|YP_005839040.1|	-	9.6e-10	37.5	99.7	0.0042	15.6	9.7	6.6	3	2	2	6	6	6	5	AAA	domain
Filament	PF00038.16	gi|385802640|ref|YP_005839040.1|	-	3.3e-07	30.0	110.0	5.9e-06	25.9	27.8	5.6	2	2	3	5	5	4	3	Intermediate	filament	protein
DUF4200	PF13863.1	gi|385802640|ref|YP_005839040.1|	-	8.8e-07	28.9	121.9	0.00071	19.5	8.2	9.4	4	3	5	9	9	9	6	Domain	of	unknown	function	(DUF4200)
AAA_15	PF13175.1	gi|385802640|ref|YP_005839040.1|	-	3.6e-06	26.3	0.0	8.7e-05	21.7	0.0	4.6	4	1	1	5	5	3	2	AAA	ATPase	domain
APG6	PF04111.7	gi|385802640|ref|YP_005839040.1|	-	8.5e-06	25.0	119.3	0.009	15.0	11.8	7.1	2	2	5	7	7	7	4	Autophagy	protein	Apg6
Laminin_II	PF06009.7	gi|385802640|ref|YP_005839040.1|	-	2.5e-05	24.0	75.4	0.083	12.6	2.2	8.5	5	2	3	9	9	8	3	Laminin	Domain	II
Seryl_tRNA_N	PF02403.17	gi|385802640|ref|YP_005839040.1|	-	2.5e-05	24.2	102.8	0.022	14.7	8.9	9.7	3	2	6	10	10	10	5	Seryl-tRNA	synthetase	N-terminal	domain
AAA_29	PF13555.1	gi|385802640|ref|YP_005839040.1|	-	2.5e-05	23.6	0.0	7.9e-05	22.1	0.0	1.8	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
CENP-F_leu_zip	PF10473.4	gi|385802640|ref|YP_005839040.1|	-	3.7e-05	23.6	117.8	0.0077	16.0	12.9	8.9	2	2	5	8	8	7	6	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Myosin_tail_1	PF01576.14	gi|385802640|ref|YP_005839040.1|	-	4.7e-05	21.3	59.9	4.7e-05	21.3	41.5	3.6	2	2	0	2	2	2	1	Myosin	tail
TPR_MLP1_2	PF07926.7	gi|385802640|ref|YP_005839040.1|	-	6e-05	22.7	107.3	0.011	15.4	13.1	7.5	3	3	2	5	5	4	4	TPR/MLP1/MLP2-like	protein
GAS	PF13851.1	gi|385802640|ref|YP_005839040.1|	-	0.00018	20.7	93.7	0.00098	18.3	11.6	6.7	2	2	3	6	6	5	3	Growth-arrest	specific	micro-tubule	binding
Cast	PF10174.4	gi|385802640|ref|YP_005839040.1|	-	0.001	17.2	111.3	0.045	11.8	26.1	3.1	2	1	0	2	2	2	2	RIM-binding	protein	of	the	cytomatrix	active	zone
EzrA	PF06160.7	gi|385802640|ref|YP_005839040.1|	-	0.0014	16.9	90.5	0.071	11.2	7.4	4.0	2	1	1	3	3	3	2	Septation	ring	formation	regulator,	EzrA
DUF4201	PF13870.1	gi|385802640|ref|YP_005839040.1|	-	0.0015	17.9	72.6	0.0073	15.7	0.8	7.9	2	2	6	8	8	7	3	Domain	of	unknown	function	(DUF4201)
Fib_alpha	PF08702.5	gi|385802640|ref|YP_005839040.1|	-	0.0029	17.7	3.9	0.0029	17.7	2.7	7.0	3	2	3	6	6	6	1	Fibrinogen	alpha/beta	chain	family
Tropomyosin	PF00261.15	gi|385802640|ref|YP_005839040.1|	-	0.0039	16.2	23.7	0.0039	16.2	16.4	5.8	3	2	2	5	5	3	2	Tropomyosin
Tropomyosin_1	PF12718.2	gi|385802640|ref|YP_005839040.1|	-	0.005	16.7	8.7	0.005	16.7	6.0	8.9	2	2	6	8	8	7	4	Tropomyosin	like
MscS_porin	PF12795.2	gi|385802640|ref|YP_005839040.1|	-	0.0059	15.9	17.7	0.0059	15.9	12.3	5.9	3	2	3	6	6	5	2	Mechanosensitive	ion	channel	porin	domain
Spc7	PF08317.6	gi|385802640|ref|YP_005839040.1|	-	0.022	13.4	104.2	0.1	11.2	7.7	7.4	2	2	7	9	9	9	0	Spc7	kinetochore	protein
ATG16	PF08614.6	gi|385802640|ref|YP_005839040.1|	-	0.03	14.1	108.4	0.029	14.1	11.6	8.0	2	2	4	6	6	5	0	Autophagy	protein	16	(ATG16)
BLOC1_2	PF10046.4	gi|385802640|ref|YP_005839040.1|	-	0.054	13.6	0.2	0.054	13.6	0.1	10.3	3	2	8	11	11	10	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
ERM	PF00769.14	gi|385802640|ref|YP_005839040.1|	-	0.13	11.7	112.7	0.024	14.1	25.5	5.6	3	2	1	5	5	4	0	Ezrin/radixin/moesin	family
DUF869	PF05911.6	gi|385802640|ref|YP_005839040.1|	-	0.18	9.9	95.6	0.045	11.9	10.1	5.1	2	2	2	5	5	5	0	Plant	protein	of	unknown	function	(DUF869)
TMF_DNA_bd	PF12329.3	gi|385802640|ref|YP_005839040.1|	-	0.2	11.4	0.1	0.015	15.0	7.7	11.3	3	2	8	12	12	12	0	TATA	element	modulatory	factor	1	DNA	binding
WEMBL	PF05701.6	gi|385802640|ref|YP_005839040.1|	-	0.22	9.9	118.9	0.13	10.6	13.6	4.8	2	2	2	4	4	4	0	Weak	chloroplast	movement	under	blue	light
ADIP	PF11559.3	gi|385802640|ref|YP_005839040.1|	-	0.24	11.2	98.4	0.084	12.7	4.4	9.4	3	3	6	10	10	10	0	Afadin-	and	alpha	-actinin-Binding
Mnd1	PF03962.10	gi|385802640|ref|YP_005839040.1|	-	0.43	10.2	106.0	0.035	13.7	0.8	8.5	2	2	6	8	8	8	0	Mnd1	family
FliJ	PF02050.11	gi|385802640|ref|YP_005839040.1|	-	1	9.4	83.2	0.93	9.5	7.5	9.6	3	3	8	11	11	10	0	Flagellar	FliJ	protein
AAA_27	PF13514.1	gi|385802640|ref|YP_005839040.1|	-	1.1	6.7	119.3	0.57	7.8	4.2	4.7	3	2	2	5	5	5	0	AAA	domain
M_domain	PF12938.2	gi|385802640|ref|YP_005839040.1|	-	2.8	7.6	7.7	13	5.4	0.2	4.6	2	2	1	3	3	3	0	M	domain	of	GW182
Syntaxin-6_N	PF09177.6	gi|385802640|ref|YP_005839040.1|	-	3.8	7.9	87.1	0.13	12.7	1.2	9.9	2	2	8	10	10	9	0	Syntaxin	6,	N-terminal
Tropomyosin	PF00261.15	gi|385802641|ref|YP_005839041.1|	-	0.005	15.9	1.0	0.005	15.9	0.7	1.8	2	0	0	2	2	2	1	Tropomyosin
DUF4482	PF14818.1	gi|385802641|ref|YP_005839041.1|	-	0.014	16.0	4.0	0.018	15.6	2.8	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4482)
FlaC_arch	PF05377.6	gi|385802641|ref|YP_005839041.1|	-	0.024	14.5	1.8	0.035	13.9	1.2	1.2	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
IncA	PF04156.9	gi|385802641|ref|YP_005839041.1|	-	0.071	12.6	5.2	0.089	12.3	3.6	1.1	1	0	0	1	1	1	0	IncA	protein
TBPIP	PF07106.8	gi|385802641|ref|YP_005839041.1|	-	0.08	12.4	1.4	0.098	12.2	0.7	1.4	1	1	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
HSBP1	PF06825.7	gi|385802641|ref|YP_005839041.1|	-	0.093	12.3	0.4	0.21	11.1	0.0	1.8	2	0	0	2	2	2	0	Heat	shock	factor	binding	protein	1
BUD22	PF09073.5	gi|385802641|ref|YP_005839041.1|	-	0.11	11.4	8.6	0.14	11.1	6.0	1.0	1	0	0	1	1	1	0	BUD22
HOOK	PF05622.7	gi|385802641|ref|YP_005839041.1|	-	0.14	9.9	5.4	0.15	9.8	3.7	1.0	1	0	0	1	1	1	0	HOOK	protein
DUF3294	PF07957.6	gi|385802641|ref|YP_005839041.1|	-	0.18	11.2	3.0	0.11	11.9	0.9	1.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3294)
DUF972	PF06156.8	gi|385802641|ref|YP_005839041.1|	-	0.23	11.8	2.7	0.29	11.4	1.8	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF972)
Striatin	PF08232.7	gi|385802641|ref|YP_005839041.1|	-	0.33	11.2	3.8	0.48	10.7	2.6	1.3	1	0	0	1	1	1	0	Striatin	family
Herpes_UL6	PF01763.11	gi|385802641|ref|YP_005839041.1|	-	0.37	8.8	3.5	0.44	8.6	2.4	1.0	1	0	0	1	1	1	0	Herpesvirus	UL6	like
SlyX	PF04102.7	gi|385802641|ref|YP_005839041.1|	-	0.47	10.8	6.2	0.24	11.7	2.8	1.7	1	1	1	2	2	2	0	SlyX
Mod_r	PF07200.8	gi|385802641|ref|YP_005839041.1|	-	0.53	10.1	5.0	0.6	10.0	3.5	1.1	1	0	0	1	1	1	0	Modifier	of	rudimentary	(Mod(r))	protein
DUF4407	PF14362.1	gi|385802641|ref|YP_005839041.1|	-	0.62	8.9	4.7	0.7	8.7	3.3	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
AATF-Che1	PF13339.1	gi|385802641|ref|YP_005839041.1|	-	0.69	10.0	4.9	0.83	9.8	3.4	1.1	1	0	0	1	1	1	0	Apoptosis	antagonizing	transcription	factor
V_ATPase_I	PF01496.14	gi|385802641|ref|YP_005839041.1|	-	1	7.1	3.4	1.1	7.0	2.4	1.0	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
TMF_DNA_bd	PF12329.3	gi|385802641|ref|YP_005839041.1|	-	1	9.2	6.9	0.088	12.6	1.0	1.9	2	1	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
Fmp27_WPPW	PF10359.4	gi|385802641|ref|YP_005839041.1|	-	1	7.6	7.3	1.2	7.4	5.1	1.1	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
IFT57	PF10498.4	gi|385802641|ref|YP_005839041.1|	-	1.1	7.9	6.2	1.5	7.4	4.3	1.3	1	1	0	1	1	1	0	Intra-flagellar	transport	protein	57
SPX	PF03105.14	gi|385802641|ref|YP_005839041.1|	-	1.6	8.4	6.3	1.8	8.2	4.4	1.1	1	0	0	1	1	1	0	SPX	domain
Cwf_Cwc_15	PF04889.7	gi|385802641|ref|YP_005839041.1|	-	2.3	7.8	11.8	2.7	7.6	8.2	1.1	1	0	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
Spc24	PF08286.6	gi|385802641|ref|YP_005839041.1|	-	4.6	6.9	11.0	0.51	10.0	2.3	2.0	1	1	1	2	2	2	0	Spc24	subunit	of	Ndc80
CENP-Q	PF13094.1	gi|385802641|ref|YP_005839041.1|	-	5.7	6.9	8.6	9.6	6.2	6.0	1.5	1	1	0	1	1	1	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
DUF3367	PF11847.3	gi|385802641|ref|YP_005839041.1|	-	7.4	4.3	6.1	8	4.2	4.2	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3367)
GatB_N	PF02934.10	gi|385802642|ref|YP_005839042.1|	-	7.6e-113	376.1	0.0	1.1e-112	375.6	0.0	1.2	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.13	gi|385802642|ref|YP_005839042.1|	-	1.1e-37	129.0	0.0	1.8e-37	128.3	0.0	1.3	1	0	0	1	1	1	1	GatB	domain
DUF3018	PF11455.3	gi|385802642|ref|YP_005839042.1|	-	0.033	14.1	0.1	0.12	12.2	0.1	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3018)
DDE_Tnp_1_2	PF13586.1	gi|385802642|ref|YP_005839042.1|	-	0.1	12.7	0.3	3.5	7.8	0.1	2.4	1	1	1	2	2	2	0	Transposase	DDE	domain
Topoisom_bac	PF01131.15	gi|385802643|ref|YP_005839043.1|	-	5.3e-111	371.2	0.0	7.9e-111	370.7	0.0	1.3	1	0	0	1	1	1	1	DNA	topoisomerase
Toprim	PF01751.17	gi|385802643|ref|YP_005839043.1|	-	2e-20	72.5	0.0	7.5e-20	70.7	0.0	2.0	2	0	0	2	2	2	1	Toprim	domain
zf-C4_Topoisom	PF01396.14	gi|385802643|ref|YP_005839043.1|	-	5.9e-20	70.4	3.5	6.8e-13	47.8	0.3	3.0	4	0	0	4	4	3	2	Topoisomerase	DNA	binding	C4	zinc	finger
HHH_5	PF14520.1	gi|385802643|ref|YP_005839043.1|	-	2.7e-07	30.6	0.1	9.8e-07	28.8	0.1	2.0	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
DNA_pol_lambd_f	PF10391.4	gi|385802643|ref|YP_005839043.1|	-	5.1e-05	22.7	0.0	0.00013	21.3	0.0	1.7	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
Cdd1	PF11731.3	gi|385802643|ref|YP_005839043.1|	-	0.00066	19.5	0.0	0.0049	16.7	0.0	2.2	2	0	0	2	2	2	1	Pathogenicity	locus
DUF4332	PF14229.1	gi|385802643|ref|YP_005839043.1|	-	0.00073	19.4	0.0	0.0023	17.9	0.0	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4332)
Toprim_4	PF13662.1	gi|385802643|ref|YP_005839043.1|	-	0.0095	15.9	0.3	0.062	13.3	0.0	2.4	2	0	0	2	2	2	1	Toprim	domain
IMS_HHH	PF11798.3	gi|385802643|ref|YP_005839043.1|	-	0.024	14.6	0.0	0.082	12.9	0.0	1.9	2	0	0	2	2	2	0	IMS	family	HHH	motif
HHH	PF00633.18	gi|385802643|ref|YP_005839043.1|	-	0.031	13.9	0.0	0.094	12.4	0.0	1.8	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
HEXIM	PF15313.1	gi|385802643|ref|YP_005839043.1|	-	0.096	12.8	0.1	0.28	11.3	0.0	1.8	1	0	0	1	1	1	0	Hexamethylene	bis-acetamide-inducible	protein
TfoX_C	PF04994.8	gi|385802643|ref|YP_005839043.1|	-	0.16	11.8	0.0	0.35	10.8	0.0	1.5	1	0	0	1	1	1	0	TfoX	C-terminal	domain
DZR	PF12773.2	gi|385802643|ref|YP_005839043.1|	-	1.2	8.9	4.6	3.2	7.6	0.4	2.8	3	0	0	3	3	3	0	Double	zinc	ribbon
CSD	PF00313.17	gi|385802644|ref|YP_005839044.1|	-	5.1e-20	71.0	0.1	5.5e-20	70.9	0.1	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
S1-like	PF14444.1	gi|385802644|ref|YP_005839044.1|	-	0.0012	18.4	0.2	0.0017	18.0	0.1	1.3	1	1	0	1	1	1	1	S1-like
OB_RNB	PF08206.6	gi|385802644|ref|YP_005839044.1|	-	0.022	14.2	2.9	0.033	13.7	2.0	1.3	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
CusF_Ec	PF11604.3	gi|385802644|ref|YP_005839044.1|	-	0.12	12.2	0.0	0.17	11.7	0.0	1.4	1	1	0	1	1	1	0	Copper	binding	periplasmic	protein	CusF
PcrB	PF01884.12	gi|385802645|ref|YP_005839045.1|	-	3.7e-47	160.5	0.2	4.3e-47	160.2	0.1	1.0	1	0	0	1	1	1	1	PcrB	family
CRF-BP	PF05428.6	gi|385802645|ref|YP_005839045.1|	-	0.06	12.1	0.0	0.094	11.5	0.0	1.2	1	0	0	1	1	1	0	Corticotropin-releasing	factor	binding	protein	(CRF-BP)
tRNA-synt_2	PF00152.15	gi|385802646|ref|YP_005839046.1|	-	4.7e-90	301.7	0.0	6.1e-90	301.3	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.20	gi|385802646|ref|YP_005839046.1|	-	6.4e-13	48.3	0.1	1.1e-12	47.6	0.1	1.4	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA-synt_2d	PF01409.15	gi|385802646|ref|YP_005839046.1|	-	0.0054	15.9	0.3	0.053	12.7	0.1	2.4	3	0	0	3	3	3	1	tRNA	synthetases	class	II	core	domain	(F)
GHMP_kinases_N	PF00288.21	gi|385802647|ref|YP_005839047.1|	-	0.013	15.5	2.2	0.013	15.5	1.6	1.8	2	0	0	2	2	2	0	GHMP	kinases	N	terminal	domain
DUF137	PF02006.11	gi|385802648|ref|YP_005839048.1|	-	1.1e-72	243.2	4.5	1.4e-72	242.8	3.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF137
Phage_GPD	PF05954.6	gi|385802648|ref|YP_005839048.1|	-	0.0025	17.0	0.1	0.0043	16.2	0.1	1.3	1	0	0	1	1	1	1	Phage	late	control	gene	D	protein	(GPD)
Trypan_PARP	PF05887.6	gi|385802648|ref|YP_005839048.1|	-	2.3	8.0	6.6	4.4	7.1	4.5	1.5	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
QueC	PF06508.8	gi|385802649|ref|YP_005839049.1|	-	0.15	11.3	0.0	0.25	10.5	0.0	1.3	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
GST_N_2	PF13409.1	gi|385802650|ref|YP_005839050.1|	-	3e-24	84.7	0.2	1.2e-23	82.9	0.0	2.0	2	0	0	2	2	2	1	Glutathione	S-transferase,	N-terminal	domain
GST_C_2	PF13410.1	gi|385802650|ref|YP_005839050.1|	-	7.9e-14	51.2	0.4	1.6e-13	50.3	0.3	1.5	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
GST_C	PF00043.20	gi|385802650|ref|YP_005839050.1|	-	9e-09	35.2	0.1	2.3e-08	33.9	0.1	1.7	2	0	0	2	2	2	1	Glutathione	S-transferase,	C-terminal	domain
GST_C_3	PF14497.1	gi|385802650|ref|YP_005839050.1|	-	3.8e-08	33.7	0.0	7.4e-08	32.7	0.0	1.6	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
GST_N_3	PF13417.1	gi|385802650|ref|YP_005839050.1|	-	4.1e-07	30.1	0.0	5e-06	26.6	0.0	2.6	2	1	0	2	2	2	1	Glutathione	S-transferase,	N-terminal	domain
HPD	PF05044.7	gi|385802650|ref|YP_005839050.1|	-	0.059	13.0	0.0	0.098	12.3	0.0	1.3	1	0	0	1	1	1	0	Homeo-prospero	domain
Rhabdo_M2	PF04785.7	gi|385802650|ref|YP_005839050.1|	-	0.08	11.9	0.1	0.17	10.8	0.0	1.5	1	0	0	1	1	1	0	Rhabdovirus	matrix	protein	M2
Thi4	PF01946.12	gi|385802651|ref|YP_005839051.1|	-	5.3e-60	202.3	0.9	6.5e-57	192.2	0.6	2.0	1	1	0	1	1	1	1	Thi4	family
DAO	PF01266.19	gi|385802651|ref|YP_005839051.1|	-	1.5e-10	40.5	1.0	5.7e-08	32.0	0.2	2.3	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|385802651|ref|YP_005839051.1|	-	5.5e-10	39.1	0.1	1.3e-09	37.9	0.1	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.14	gi|385802651|ref|YP_005839051.1|	-	6.8e-10	38.5	0.4	1e-09	37.9	0.1	1.4	2	0	0	2	2	2	1	FAD	binding	domain
FAD_binding_2	PF00890.19	gi|385802651|ref|YP_005839051.1|	-	3e-09	36.2	2.6	4.7e-08	32.3	1.8	2.2	1	1	0	1	1	1	1	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|385802651|ref|YP_005839051.1|	-	1.1e-07	31.3	0.1	1.5e-07	30.8	0.1	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|385802651|ref|YP_005839051.1|	-	4.8e-07	28.5	0.1	6.9e-07	28.0	0.0	1.2	1	0	0	1	1	1	1	HI0933-like	protein
Pyr_redox_2	PF07992.9	gi|385802651|ref|YP_005839051.1|	-	2.4e-06	27.5	0.2	3.8e-06	26.9	0.1	1.6	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|385802651|ref|YP_005839051.1|	-	2.9e-06	27.5	0.4	9.2e-06	25.9	0.3	1.9	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|385802651|ref|YP_005839051.1|	-	1.7e-05	24.6	0.1	4e-05	23.4	0.1	1.6	1	0	0	1	1	1	1	FAD-NAD(P)-binding
Trp_halogenase	PF04820.9	gi|385802651|ref|YP_005839051.1|	-	7.4e-05	21.5	0.8	0.0072	14.9	0.1	2.5	2	1	0	2	2	2	1	Tryptophan	halogenase
Pyr_redox_3	PF13738.1	gi|385802651|ref|YP_005839051.1|	-	0.00015	21.8	0.3	0.00035	20.6	0.2	1.8	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Amino_oxidase	PF01593.19	gi|385802651|ref|YP_005839051.1|	-	0.0002	20.5	0.0	0.00032	19.9	0.0	1.3	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
Lycopene_cycl	PF05834.7	gi|385802651|ref|YP_005839051.1|	-	0.0012	17.8	0.4	0.021	13.7	0.1	2.1	2	0	0	2	2	2	1	Lycopene	cyclase	protein
NAD_binding_7	PF13241.1	gi|385802651|ref|YP_005839051.1|	-	0.0029	17.8	0.0	0.0054	16.9	0.0	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
GIDA	PF01134.17	gi|385802651|ref|YP_005839051.1|	-	0.014	14.2	0.2	0.021	13.6	0.1	1.2	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
TrkA_N	PF02254.13	gi|385802651|ref|YP_005839051.1|	-	0.016	15.2	0.5	0.036	14.0	0.1	1.8	2	0	0	2	2	2	0	TrkA-N	domain
UDPG_MGDP_dh_N	PF03721.9	gi|385802651|ref|YP_005839051.1|	-	0.032	13.5	0.1	0.055	12.8	0.1	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Aldolase_2	PF10120.4	gi|385802652|ref|YP_005839052.1|	-	2.6e-52	176.6	0.0	3.5e-52	176.1	0.0	1.2	1	0	0	1	1	1	1	Putative	aldolase
HTH_3	PF01381.17	gi|385802652|ref|YP_005839052.1|	-	6.2e-07	29.1	0.0	1.5e-06	27.9	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.1	gi|385802652|ref|YP_005839052.1|	-	8.3e-06	25.9	1.8	2e-05	24.6	0.0	2.3	3	0	0	3	3	2	1	Helix-turn-helix	domain
Sigma70_r4	PF04545.11	gi|385802652|ref|YP_005839052.1|	-	1.2e-05	24.4	2.2	0.00068	18.9	0.0	2.5	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_37	PF13744.1	gi|385802652|ref|YP_005839052.1|	-	2e-05	24.3	0.0	5.3e-05	22.9	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|385802652|ref|YP_005839052.1|	-	0.00023	20.6	0.1	0.0027	17.3	0.0	2.6	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_24	PF13412.1	gi|385802652|ref|YP_005839052.1|	-	0.00044	19.5	2.0	0.0016	17.7	0.0	2.6	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
HTH_26	PF13443.1	gi|385802652|ref|YP_005839052.1|	-	0.00076	19.6	0.0	0.0016	18.6	0.0	1.5	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_19	PF12844.2	gi|385802652|ref|YP_005839052.1|	-	0.0016	18.4	0.0	0.0035	17.3	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_38	PF13936.1	gi|385802652|ref|YP_005839052.1|	-	0.0042	16.6	0.2	0.011	15.3	0.0	1.7	2	0	0	2	2	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|385802652|ref|YP_005839052.1|	-	0.0049	16.5	0.0	0.0049	16.5	0.0	2.6	3	0	0	3	3	2	1	MarR	family
Sigma70_r4_2	PF08281.7	gi|385802652|ref|YP_005839052.1|	-	0.023	14.1	2.1	0.24	10.8	0.0	2.5	2	0	0	2	2	2	0	Sigma-70,	region	4
Cro	PF09048.5	gi|385802652|ref|YP_005839052.1|	-	0.028	14.0	0.0	0.06	12.9	0.0	1.5	1	0	0	1	1	1	0	Cro
HTH_5	PF01022.15	gi|385802652|ref|YP_005839052.1|	-	0.034	13.8	0.0	0.08	12.6	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
P22_Cro	PF14549.1	gi|385802652|ref|YP_005839052.1|	-	0.035	13.8	0.0	0.074	12.7	0.0	1.5	1	0	0	1	1	1	0	DNA-binding	transcriptional	regulator	Cro
KorB	PF08535.5	gi|385802652|ref|YP_005839052.1|	-	0.037	14.1	0.0	0.28	11.3	0.0	2.2	2	0	0	2	2	2	0	KorB	domain
DUF3326	PF11805.3	gi|385802652|ref|YP_005839052.1|	-	0.081	11.6	0.0	0.14	10.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3326)
HTH_10	PF04967.7	gi|385802652|ref|YP_005839052.1|	-	0.084	12.4	0.4	0.43	10.2	0.0	2.3	3	0	0	3	3	2	0	HTH	DNA	binding	domain
HTH_1	PF00126.22	gi|385802652|ref|YP_005839052.1|	-	0.091	12.5	0.1	0.31	10.7	0.0	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_Crp_2	PF13545.1	gi|385802652|ref|YP_005839052.1|	-	0.1	12.3	0.0	0.53	10.1	0.0	2.1	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
DUF2481	PF10654.4	gi|385802652|ref|YP_005839052.1|	-	0.12	12.1	0.0	0.2	11.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2481)
DUF3071	PF11268.3	gi|385802652|ref|YP_005839052.1|	-	0.14	11.8	0.0	0.26	11.0	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3071)
dUTPase	PF00692.14	gi|385802653|ref|YP_005839053.1|	-	6.6e-16	57.9	0.0	1.1e-15	57.2	0.0	1.3	1	0	0	1	1	1	1	dUTPase
DCD	PF06559.6	gi|385802653|ref|YP_005839053.1|	-	1.2e-15	56.8	0.1	5.4e-10	38.2	0.0	2.1	1	1	1	2	2	2	2	2'-deoxycytidine	5'-triphosphate	deaminase	(DCD)
PTH2	PF01981.11	gi|385802654|ref|YP_005839054.1|	-	2.6e-41	139.9	0.1	2.9e-41	139.7	0.1	1.0	1	0	0	1	1	1	1	Peptidyl-tRNA	hydrolase	PTH2
HATPase_c	PF02518.21	gi|385802655|ref|YP_005839055.1|	-	2.4e-20	72.2	0.1	5.6e-20	71.1	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.1	gi|385802655|ref|YP_005839055.1|	-	4.4e-12	46.2	0.0	9.5e-12	45.2	0.0	1.6	1	0	0	1	1	1	1	PAS	domain
HisKA	PF00512.20	gi|385802655|ref|YP_005839055.1|	-	2.2e-11	43.5	2.3	1.3e-09	37.9	0.7	3.1	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS	PF00989.19	gi|385802655|ref|YP_005839055.1|	-	3.8e-08	33.0	0.3	1.7e-07	31.0	0.0	2.2	3	0	0	3	3	3	1	PAS	fold
PAS_3	PF08447.6	gi|385802655|ref|YP_005839055.1|	-	0.00035	20.6	0.0	0.00083	19.4	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
HATPase_c_3	PF13589.1	gi|385802655|ref|YP_005839055.1|	-	0.0004	20.0	0.0	0.00096	18.8	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_8	PF13188.1	gi|385802655|ref|YP_005839055.1|	-	0.001	18.8	0.3	0.0068	16.2	0.0	2.4	2	1	0	2	2	2	1	PAS	domain
HATPase_c_2	PF13581.1	gi|385802655|ref|YP_005839055.1|	-	0.0085	15.8	0.6	0.023	14.5	0.0	2.0	3	0	0	3	3	3	1	Histidine	kinase-like	ATPase	domain
PMC2NT	PF08066.7	gi|385802655|ref|YP_005839055.1|	-	0.0093	16.2	0.9	1.2	9.5	0.1	3.4	2	1	1	3	3	3	1	PMC2NT	(NUC016)	domain
PAS_4	PF08448.5	gi|385802655|ref|YP_005839055.1|	-	0.02	14.9	0.1	0.039	13.9	0.1	1.5	1	0	0	1	1	1	0	PAS	fold
TruD	PF01142.13	gi|385802656|ref|YP_005839056.1|	-	8.6e-89	297.8	0.0	1.9e-85	286.8	0.0	2.1	1	1	0	1	1	1	1	tRNA	pseudouridine	synthase	D	(TruD)
DUF1770	PF08589.5	gi|385802656|ref|YP_005839056.1|	-	0.072	13.7	0.1	0.35	11.5	0.0	2.2	2	0	0	2	2	2	0	Fungal	protein	of	unknown	function	(DUF1770)
DUF2103	PF09876.4	gi|385802657|ref|YP_005839057.1|	-	5.5e-46	154.5	0.1	8.9e-46	153.8	0.1	1.3	1	0	0	1	1	1	1	Predicted	metal-binding	protein	(DUF2103)
zf-FPG_IleRS	PF06827.9	gi|385802657|ref|YP_005839057.1|	-	1.4	8.6	4.1	2.3	7.9	2.1	2.0	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
Ribosomal_L37ae	PF01780.14	gi|385802658|ref|YP_005839058.1|	-	2.6e-23	81.6	0.6	3.1e-23	81.4	0.4	1.0	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
DNA_RNApol_7kD	PF03604.8	gi|385802659|ref|YP_005839059.1|	-	2.8e-10	39.4	4.7	3.3e-10	39.2	3.3	1.1	1	0	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
A2L_zn_ribbon	PF08792.5	gi|385802659|ref|YP_005839059.1|	-	0.00021	20.6	1.4	0.0003	20.1	1.0	1.2	1	0	0	1	1	1	1	A2L	zinc	ribbon	domain
DUF329	PF03884.9	gi|385802659|ref|YP_005839059.1|	-	0.00066	19.1	3.9	0.013	15.0	1.0	1.9	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF329)
HypA	PF01155.14	gi|385802659|ref|YP_005839059.1|	-	0.00084	19.0	0.4	0.00084	19.0	0.3	1.1	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
TF_Zn_Ribbon	PF08271.7	gi|385802659|ref|YP_005839059.1|	-	0.0044	16.3	2.1	0.006	15.8	1.5	1.2	1	0	0	1	1	1	1	TFIIB	zinc-binding
Zn_Tnp_IS1595	PF12760.2	gi|385802659|ref|YP_005839059.1|	-	0.0048	16.6	4.4	0.16	11.7	0.1	2.1	2	0	0	2	2	2	1	Transposase	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|385802659|ref|YP_005839059.1|	-	0.0085	15.2	2.4	0.098	11.8	0.2	2.0	1	1	1	2	2	2	2	zinc-ribbon	domain
DZR	PF12773.2	gi|385802659|ref|YP_005839059.1|	-	0.017	14.9	0.6	0.033	13.9	0.4	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
DUF951	PF06107.6	gi|385802659|ref|YP_005839059.1|	-	0.026	14.0	1.6	2.4	7.7	0.1	2.1	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF951)
zinc-ribbons_6	PF07191.7	gi|385802659|ref|YP_005839059.1|	-	0.028	14.1	0.2	0.035	13.8	0.1	1.1	1	0	0	1	1	1	0	zinc-ribbons
Cys_rich_CPXG	PF14255.1	gi|385802659|ref|YP_005839059.1|	-	0.035	13.9	0.5	0.15	11.8	0.0	1.9	2	0	0	2	2	2	0	Cysteine-rich	CPXCG
Prok-RING_4	PF14447.1	gi|385802659|ref|YP_005839059.1|	-	0.036	13.6	0.4	0.043	13.3	0.3	1.3	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	4
OrfB_Zn_ribbon	PF07282.6	gi|385802659|ref|YP_005839059.1|	-	0.042	13.5	1.1	0.05	13.2	0.8	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Prok-RING_1	PF14446.1	gi|385802659|ref|YP_005839059.1|	-	0.042	13.5	1.5	0.29	10.8	1.2	1.8	1	1	1	2	2	2	0	Prokaryotic	RING	finger	family	1
C1_1	PF00130.17	gi|385802659|ref|YP_005839059.1|	-	0.053	13.2	0.6	0.066	12.9	0.4	1.1	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Lar_restr_allev	PF14354.1	gi|385802659|ref|YP_005839059.1|	-	0.057	13.7	1.9	0.063	13.5	0.1	1.8	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
zf-AN1	PF01428.11	gi|385802659|ref|YP_005839059.1|	-	0.068	13.0	1.4	0.16	11.8	1.0	1.6	1	1	1	2	2	2	0	AN1-like	Zinc	finger
zf-Di19	PF05605.7	gi|385802659|ref|YP_005839059.1|	-	0.078	13.1	0.4	1.1	9.3	0.0	2.0	2	0	0	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-HIT	PF04438.11	gi|385802659|ref|YP_005839059.1|	-	0.091	12.4	3.3	0.81	9.3	0.5	2.1	2	0	0	2	2	2	0	HIT	zinc	finger
zinc_ribbon_2	PF13240.1	gi|385802659|ref|YP_005839059.1|	-	0.14	11.6	4.4	1.6	8.2	3.1	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|385802659|ref|YP_005839059.1|	-	0.15	12.0	5.1	1.1	9.3	3.5	2.0	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-C2HC5	PF06221.8	gi|385802659|ref|YP_005839059.1|	-	0.15	11.8	0.7	0.73	9.6	0.5	1.9	1	1	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
zf-RING_3	PF14369.1	gi|385802659|ref|YP_005839059.1|	-	0.16	11.9	1.3	0.26	11.3	0.9	1.4	1	0	0	1	1	1	0	zinc-finger
UPF0547	PF10571.4	gi|385802659|ref|YP_005839059.1|	-	0.21	11.3	1.5	0.21	11.3	1.0	2.3	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
TFIIS_C	PF01096.13	gi|385802659|ref|YP_005839059.1|	-	0.22	11.1	1.1	16	5.2	0.0	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Desulfoferrod_N	PF06397.7	gi|385802659|ref|YP_005839059.1|	-	0.3	10.5	2.2	4.1	6.8	0.2	2.1	1	1	1	2	2	2	0	Desulfoferrodoxin,	N-terminal	domain
Sgf11	PF08209.6	gi|385802659|ref|YP_005839059.1|	-	0.38	10.1	3.7	1.2	8.5	0.3	2.1	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
zf-C2H2_4	PF13894.1	gi|385802659|ref|YP_005839059.1|	-	0.39	11.1	1.8	6.7	7.2	0.1	2.1	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-Sec23_Sec24	PF04810.10	gi|385802659|ref|YP_005839059.1|	-	0.45	10.1	0.1	0.45	10.1	0.1	2.0	1	1	0	2	2	2	0	Sec23/Sec24	zinc	finger
zinc_ribbon_4	PF13717.1	gi|385802659|ref|YP_005839059.1|	-	1.4	8.6	6.2	77	3.1	4.3	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|385802659|ref|YP_005839059.1|	-	1.6	8.3	6.3	90	2.7	4.4	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
Mu-like_Com	PF10122.4	gi|385802659|ref|YP_005839059.1|	-	3.4	6.7	6.6	5.2	6.1	0.9	2.1	1	1	1	2	2	2	0	Mu-like	prophage	protein	Com
Zn_Tnp_IS1	PF03811.8	gi|385802659|ref|YP_005839059.1|	-	6.6	6.3	6.7	6.3	6.3	0.2	2.1	2	0	0	2	2	2	0	InsA	N-terminal	domain
zf-C2HC_2	PF13913.1	gi|385802659|ref|YP_005839059.1|	-	7.6	6.3	6.6	11	5.8	0.5	2.2	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
Pcc1	PF09341.5	gi|385802660|ref|YP_005839060.1|	-	3.5e-15	55.7	0.2	5.5e-15	55.1	0.1	1.3	1	0	0	1	1	1	1	Transcription	factor	Pcc1
Prefoldin_2	PF01920.15	gi|385802661|ref|YP_005839061.1|	-	4.7e-23	80.9	18.1	5.3e-23	80.8	12.6	1.0	1	0	0	1	1	1	1	Prefoldin	subunit
ALIX_LYPXL_bnd	PF13949.1	gi|385802661|ref|YP_005839061.1|	-	0.00094	18.2	8.6	0.0012	17.9	6.0	1.1	1	0	0	1	1	1	1	ALIX	V-shaped	domain	binding	to	HIV
Prefoldin	PF02996.12	gi|385802661|ref|YP_005839061.1|	-	0.0039	16.8	13.6	0.29	10.8	9.4	2.3	1	1	0	1	1	1	1	Prefoldin	subunit
CobN-Mg_chel	PF02514.11	gi|385802661|ref|YP_005839061.1|	-	0.011	13.2	2.3	0.013	12.9	1.6	1.0	1	0	0	1	1	1	0	CobN/Magnesium	Chelatase
DUF3610	PF12272.3	gi|385802661|ref|YP_005839061.1|	-	0.017	14.8	1.2	0.037	13.6	0.3	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3610)
Laminin_I	PF06008.9	gi|385802661|ref|YP_005839061.1|	-	0.024	13.9	15.3	0.21	10.8	1.1	2.1	1	1	0	2	2	2	0	Laminin	Domain	I
CK2S	PF15011.1	gi|385802661|ref|YP_005839061.1|	-	0.027	14.2	5.1	0.09	12.5	3.5	1.8	1	1	0	1	1	1	0	Casein	Kinase	2	substrate
eIF3_subunit	PF08597.5	gi|385802661|ref|YP_005839061.1|	-	0.03	13.8	6.5	0.039	13.5	4.5	1.1	1	0	0	1	1	1	0	Translation	initiation	factor	eIF3	subunit
SseC	PF04888.7	gi|385802661|ref|YP_005839061.1|	-	0.033	13.5	0.2	0.033	13.5	0.2	2.1	2	0	0	2	2	2	0	Secretion	system	effector	C	(SseC)	like	family
DUF4164	PF13747.1	gi|385802661|ref|YP_005839061.1|	-	0.04	14.0	15.1	0.24	11.5	1.3	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4164)
bZIP_1	PF00170.16	gi|385802661|ref|YP_005839061.1|	-	0.046	13.6	1.3	0.046	13.6	0.9	2.2	2	0	0	2	2	2	0	bZIP	transcription	factor
NPV_P10	PF05531.7	gi|385802661|ref|YP_005839061.1|	-	0.057	13.6	9.8	0.12	12.5	2.0	2.3	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
Radical_SAM_N	PF08497.5	gi|385802661|ref|YP_005839061.1|	-	0.057	12.3	1.4	0.069	12.0	0.9	1.1	1	0	0	1	1	1	0	Radical	SAM	N-terminal
CDC37_N	PF03234.9	gi|385802661|ref|YP_005839061.1|	-	0.11	12.8	9.2	0.13	12.5	6.4	1.1	1	0	0	1	1	1	0	Cdc37	N	terminal	kinase	binding
PilJ	PF13675.1	gi|385802661|ref|YP_005839061.1|	-	0.14	12.4	9.4	2.4	8.4	6.6	2.3	1	1	0	1	1	1	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
DUF4407	PF14362.1	gi|385802661|ref|YP_005839061.1|	-	0.15	11.0	10.5	0.39	9.6	0.1	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4407)
FlgN	PF05130.7	gi|385802661|ref|YP_005839061.1|	-	0.15	12.3	10.2	0.23	11.6	7.0	1.3	1	0	0	1	1	1	0	FlgN	protein
Acyl-CoA_dh_C	PF12806.2	gi|385802661|ref|YP_005839061.1|	-	0.15	11.8	1.7	7.5	6.4	0.6	2.2	2	0	0	2	2	2	0	Acetyl-CoA	dehydrogenase	C-terminal	like
Sigma70_ner	PF04546.8	gi|385802661|ref|YP_005839061.1|	-	0.15	11.6	11.6	0.053	13.1	2.2	2.0	1	1	1	2	2	2	0	Sigma-70,	non-essential	region
Phage_GPO	PF05929.6	gi|385802661|ref|YP_005839061.1|	-	0.2	10.8	9.3	0.55	9.4	6.5	1.5	1	1	0	1	1	1	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
COG2	PF06148.6	gi|385802661|ref|YP_005839061.1|	-	0.21	11.4	12.5	0.15	11.9	1.5	2.0	1	1	1	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF4404	PF14357.1	gi|385802661|ref|YP_005839061.1|	-	0.22	11.9	9.2	0.56	10.6	0.4	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4404)
WXG100	PF06013.7	gi|385802661|ref|YP_005839061.1|	-	0.25	11.3	10.8	3.2	7.8	1.1	2.7	2	1	0	2	2	2	0	Proteins	of	100	residues	with	WXG
DUF3584	PF12128.3	gi|385802661|ref|YP_005839061.1|	-	0.3	8.3	11.0	0.4	7.9	7.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
DUF1664	PF07889.7	gi|385802661|ref|YP_005839061.1|	-	0.32	10.8	9.3	0.14	11.9	1.3	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
TraF_2	PF13729.1	gi|385802661|ref|YP_005839061.1|	-	0.4	9.4	9.3	0.078	11.7	0.4	2.0	1	1	1	2	2	2	0	F	plasmid	transfer	operon,	TraF,	protein
DUF4140	PF13600.1	gi|385802661|ref|YP_005839061.1|	-	0.46	10.9	15.6	0.14	12.6	1.8	2.3	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
DUF972	PF06156.8	gi|385802661|ref|YP_005839061.1|	-	0.47	10.8	8.5	0.55	10.5	0.8	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF972)
FH2	PF02181.18	gi|385802661|ref|YP_005839061.1|	-	0.47	9.2	8.4	0.58	8.9	5.8	1.0	1	0	0	1	1	1	0	Formin	Homology	2	Domain
Syntaxin	PF00804.20	gi|385802661|ref|YP_005839061.1|	-	0.47	10.6	5.9	1.4	9.0	0.5	2.2	2	0	0	2	2	2	0	Syntaxin
Hemerythrin	PF01814.18	gi|385802661|ref|YP_005839061.1|	-	0.62	10.2	8.7	3.9	7.6	6.0	1.9	1	1	0	1	1	1	0	Hemerythrin	HHE	cation	binding	domain
PP-binding_2	PF14573.1	gi|385802661|ref|YP_005839061.1|	-	0.64	10.0	4.6	10	6.2	0.1	2.3	2	0	0	2	2	2	0	Acyl-carrier
TRCF	PF03461.10	gi|385802661|ref|YP_005839061.1|	-	0.68	9.9	4.2	2.9	7.9	0.2	2.8	1	1	2	3	3	3	0	TRCF	domain
TPR_MLP1_2	PF07926.7	gi|385802661|ref|YP_005839061.1|	-	0.68	9.6	17.1	2.2	8.0	1.2	2.2	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
Sec8_exocyst	PF04048.9	gi|385802661|ref|YP_005839061.1|	-	0.72	9.4	6.4	0.29	10.7	0.8	2.0	1	1	1	2	2	2	0	Sec8	exocyst	complex	component	specific	domain
Tektin	PF03148.9	gi|385802661|ref|YP_005839061.1|	-	0.72	8.3	13.7	1	7.8	9.5	1.2	1	0	0	1	1	1	0	Tektin	family
CENP-F_leu_zip	PF10473.4	gi|385802661|ref|YP_005839061.1|	-	0.74	9.6	18.4	0.28	11.0	3.6	2.1	1	1	1	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Cortex-I_coil	PF09304.5	gi|385802661|ref|YP_005839061.1|	-	0.79	9.7	16.6	0.54	10.3	4.1	2.0	1	1	1	2	2	2	0	Cortexillin	I,	coiled	coil
Snapin_Pallidin	PF14712.1	gi|385802661|ref|YP_005839061.1|	-	0.79	10.0	12.7	0.3	11.3	1.7	2.2	2	0	0	2	2	2	0	Snapin/Pallidin
AAA_27	PF13514.1	gi|385802661|ref|YP_005839061.1|	-	0.84	7.2	12.8	1.1	6.8	8.8	1.1	1	0	0	1	1	1	0	AAA	domain
DASH_Dam1	PF08653.5	gi|385802661|ref|YP_005839061.1|	-	0.9	9.3	5.7	3	7.6	0.3	2.8	2	2	0	2	2	2	0	DASH	complex	subunit	Dam1
Fzo_mitofusin	PF04799.8	gi|385802661|ref|YP_005839061.1|	-	0.92	8.8	9.5	1.7	8.0	1.3	2.1	1	1	1	2	2	2	0	fzo-like	conserved	region
Fijivirus_P9-2	PF06837.6	gi|385802661|ref|YP_005839061.1|	-	0.97	8.5	3.7	2	7.5	0.7	2.0	1	1	1	2	2	2	0	Fijivirus	P9-2	protein
PspA_IM30	PF04012.7	gi|385802661|ref|YP_005839061.1|	-	1	8.6	17.7	5.4	6.3	5.9	1.9	1	1	0	1	1	1	0	PspA/IM30	family
Phasin	PF05597.6	gi|385802661|ref|YP_005839061.1|	-	1.1	9.0	10.1	1.3	8.7	5.8	1.9	1	1	0	1	1	1	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
OPA3	PF07047.7	gi|385802661|ref|YP_005839061.1|	-	1.3	8.8	6.8	0.93	9.2	3.6	1.4	1	1	1	2	2	2	0	Optic	atrophy	3	protein	(OPA3)
Spc24	PF08286.6	gi|385802661|ref|YP_005839061.1|	-	1.3	8.7	16.8	0.19	11.4	1.9	2.1	1	1	1	2	2	2	0	Spc24	subunit	of	Ndc80
DUF4200	PF13863.1	gi|385802661|ref|YP_005839061.1|	-	1.3	8.9	17.0	0.79	9.6	3.2	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4200)
FlaC_arch	PF05377.6	gi|385802661|ref|YP_005839061.1|	-	1.4	8.8	10.0	0.094	12.6	1.8	2.4	2	1	1	3	3	2	0	Flagella	accessory	protein	C	(FlaC)
DUF3450	PF11932.3	gi|385802661|ref|YP_005839061.1|	-	1.6	7.9	17.7	2.3	7.4	4.2	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3450)
PCEMA1	PF07418.6	gi|385802661|ref|YP_005839061.1|	-	1.7	7.9	7.6	2	7.7	5.3	1.0	1	0	0	1	1	1	0	Acidic	phosphoprotein	precursor	PCEMA1
Med10	PF09748.4	gi|385802661|ref|YP_005839061.1|	-	1.9	8.2	4.8	23	4.8	3.3	2.0	1	1	0	1	1	1	0	Transcription	factor	subunit	Med10	of	Mediator	complex
ERp29	PF07749.7	gi|385802661|ref|YP_005839061.1|	-	2.1	9.0	5.5	3.4	8.3	3.0	1.8	1	1	1	2	2	2	0	Endoplasmic	reticulum	protein	ERp29,	C-terminal	domain
IncA	PF04156.9	gi|385802661|ref|YP_005839061.1|	-	2.2	7.8	22.0	7.2	6.1	15.3	1.6	1	1	0	1	1	1	0	IncA	protein
Baculo_PEP_C	PF04513.7	gi|385802661|ref|YP_005839061.1|	-	2.3	8.0	8.2	8.3	6.2	5.7	1.8	1	1	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
V_ATPase_I	PF01496.14	gi|385802661|ref|YP_005839061.1|	-	2.4	5.9	12.5	10	3.8	8.8	1.7	1	1	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Syntaxin-6_N	PF09177.6	gi|385802661|ref|YP_005839061.1|	-	2.4	8.6	9.7	60	4.1	6.6	2.4	1	1	0	1	1	1	0	Syntaxin	6,	N-terminal
Mnd1	PF03962.10	gi|385802661|ref|YP_005839061.1|	-	2.5	7.7	14.1	1.3	8.6	1.2	2.0	1	1	1	2	2	2	0	Mnd1	family
DASH_Dad2	PF08654.5	gi|385802661|ref|YP_005839061.1|	-	2.7	8.0	11.7	0.82	9.7	0.8	2.6	1	1	1	3	3	3	0	DASH	complex	subunit	Dad2
Lebercilin	PF15619.1	gi|385802661|ref|YP_005839061.1|	-	2.8	7.2	14.9	6.3	6.1	10.3	1.5	1	1	0	1	1	1	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
CorA	PF01544.13	gi|385802661|ref|YP_005839061.1|	-	2.9	6.8	10.3	13	4.7	7.3	1.8	1	1	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
HSP70	PF00012.15	gi|385802661|ref|YP_005839061.1|	-	3.9	5.2	9.5	4.8	4.9	6.6	1.0	1	0	0	1	1	1	0	Hsp70	protein
Seryl_tRNA_N	PF02403.17	gi|385802661|ref|YP_005839061.1|	-	4	7.4	13.7	3.1	7.8	1.0	2.2	1	1	1	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
AMP-binding_C_2	PF14535.1	gi|385802661|ref|YP_005839061.1|	-	4.2	7.4	5.9	1.3	9.0	1.2	2.0	1	1	1	2	2	2	0	AMP-binding	enzyme	C-terminal	domain
APG6	PF04111.7	gi|385802661|ref|YP_005839061.1|	-	4.5	6.2	18.4	7.2	5.5	12.8	1.3	1	1	0	1	1	1	0	Autophagy	protein	Apg6
ERM	PF00769.14	gi|385802661|ref|YP_005839061.1|	-	4.8	6.6	16.9	7.5	6.0	11.7	1.2	1	0	0	1	1	1	0	Ezrin/radixin/moesin	family
Prominin	PF05478.6	gi|385802661|ref|YP_005839061.1|	-	5.1	4.4	6.8	12	3.2	4.8	1.4	1	1	0	1	1	1	0	Prominin
Fib_alpha	PF08702.5	gi|385802661|ref|YP_005839061.1|	-	5.3	7.1	8.6	2	8.5	0.8	2.0	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
DUF2408	PF10303.4	gi|385802661|ref|YP_005839061.1|	-	5.5	7.1	8.7	25	4.9	6.0	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2408)
DUF4559	PF15112.1	gi|385802661|ref|YP_005839061.1|	-	5.7	6.0	9.4	7.7	5.5	6.5	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4559)
DUF964	PF06133.6	gi|385802661|ref|YP_005839061.1|	-	5.8	6.9	17.6	0.99	9.4	4.3	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF964)
Laminin_II	PF06009.7	gi|385802661|ref|YP_005839061.1|	-	5.8	6.6	9.6	59	3.4	6.7	2.0	1	1	0	1	1	1	0	Laminin	Domain	II
BLOC1_2	PF10046.4	gi|385802661|ref|YP_005839061.1|	-	6.4	6.9	11.4	53	4.0	2.4	2.3	1	1	1	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Atg14	PF10186.4	gi|385802661|ref|YP_005839061.1|	-	7	5.5	11.2	22	3.8	7.7	1.6	1	1	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
bZIP_Maf	PF03131.12	gi|385802661|ref|YP_005839061.1|	-	7.7	6.8	11.4	3.8	7.8	1.7	2.2	2	0	0	2	2	2	0	bZIP	Maf	transcription	factor
DUF904	PF06005.7	gi|385802661|ref|YP_005839061.1|	-	7.8	6.8	16.3	0.51	10.6	2.8	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF904)
Bap31	PF05529.7	gi|385802661|ref|YP_005839061.1|	-	7.8	5.8	9.1	12	5.3	6.3	1.3	1	0	0	1	1	1	0	B-cell	receptor-associated	protein	31-like
DUF948	PF06103.6	gi|385802661|ref|YP_005839061.1|	-	7.9	6.4	7.5	4.4	7.2	0.6	2.3	1	1	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
Lectin_N	PF03954.9	gi|385802661|ref|YP_005839061.1|	-	8.1	5.8	6.9	31	3.9	4.8	1.8	1	1	0	1	1	1	0	Hepatic	lectin,	N-terminal	domain
Syntaxin_2	PF14523.1	gi|385802661|ref|YP_005839061.1|	-	8.8	6.4	8.5	3.2	7.8	1.3	2.1	1	1	0	1	1	1	0	Syntaxin-like	protein
GAS	PF13851.1	gi|385802661|ref|YP_005839061.1|	-	9.2	5.4	17.6	65	2.6	12.1	1.8	1	1	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
Sec34	PF04136.10	gi|385802661|ref|YP_005839061.1|	-	9.8	5.8	11.6	6.5	6.4	2.8	2.0	1	1	1	2	2	2	0	Sec34-like	family
DUF3194	PF11419.3	gi|385802662|ref|YP_005839062.1|	-	0.0014	18.8	1.5	0.002	18.2	0.9	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3194)
DUF2070	PF09843.4	gi|385802663|ref|YP_005839063.1|	-	9.3e-55	184.8	0.7	1.5e-54	184.1	0.1	1.6	2	0	0	2	2	2	1	Predicted	membrane	protein	(DUF2070)
GATase	PF00117.23	gi|385802664|ref|YP_005839064.1|	-	4.1e-36	124.2	0.0	4.6e-36	124.0	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|385802664|ref|YP_005839064.1|	-	9.6e-16	57.8	2.3	5.6e-12	45.5	0.2	2.9	2	1	0	2	2	2	2	Peptidase	C26
GATase_3	PF07685.9	gi|385802664|ref|YP_005839064.1|	-	0.034	13.7	0.2	0.065	12.8	0.0	1.6	2	0	0	2	2	2	0	CobB/CobQ-like	glutamine	amidotransferase	domain
DUF968	PF06147.6	gi|385802665|ref|YP_005839065.1|	-	0.0024	17.8	1.2	1.5	8.6	0.1	2.3	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF968)
An_peroxidase	PF03098.10	gi|385802665|ref|YP_005839065.1|	-	0.025	12.9	0.0	0.033	12.5	0.0	1.1	1	0	0	1	1	1	0	Animal	haem	peroxidase
DUF192	PF02643.10	gi|385802666|ref|YP_005839066.1|	-	4.3e-16	58.5	0.0	5e-16	58.3	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1430
HMGL-like	PF00682.14	gi|385802667|ref|YP_005839067.1|	-	1.2e-56	192.0	0.7	1.2e-56	192.0	0.5	1.7	2	0	0	2	2	2	1	HMGL-like
LeuA_dimer	PF08502.5	gi|385802667|ref|YP_005839067.1|	-	1.9e-30	105.3	0.7	4e-30	104.3	0.5	1.6	1	0	0	1	1	1	1	LeuA	allosteric	(dimerisation)	domain
AP_endonuc_2	PF01261.19	gi|385802667|ref|YP_005839067.1|	-	0.017	14.4	0.1	0.052	12.8	0.0	1.9	1	0	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
DUF3631	PF12307.3	gi|385802667|ref|YP_005839067.1|	-	0.13	12.1	0.1	0.23	11.3	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3631)
Integrase_AP2	PF14657.1	gi|385802668|ref|YP_005839068.1|	-	0.15	11.8	0.0	0.25	11.1	0.0	1.3	1	0	0	1	1	1	0	AP2-like	DNA-binding	integrase	domain
ABC_tran	PF00005.22	gi|385802670|ref|YP_005839070.1|	-	1.5e-29	103.0	0.0	5.3e-29	101.2	0.0	1.8	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.1	gi|385802670|ref|YP_005839070.1|	-	4.5e-12	46.5	0.3	4.7e-06	26.7	0.0	2.5	3	0	0	3	3	3	2	AAA	domain
AAA_15	PF13175.1	gi|385802670|ref|YP_005839070.1|	-	0.00024	20.2	0.0	0.16	11.0	0.0	2.3	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.1	gi|385802670|ref|YP_005839070.1|	-	0.00025	21.4	0.1	0.00065	20.0	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.1	gi|385802670|ref|YP_005839070.1|	-	0.00028	20.3	0.2	0.0016	17.9	0.1	2.1	1	1	1	2	2	2	1	AAA	domain
AAA_10	PF12846.2	gi|385802670|ref|YP_005839070.1|	-	0.0011	18.4	0.1	0.0035	16.8	0.0	1.7	1	1	0	1	1	1	1	AAA-like	domain
AAA_16	PF13191.1	gi|385802670|ref|YP_005839070.1|	-	0.0019	18.2	0.0	0.0045	16.9	0.0	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|385802670|ref|YP_005839070.1|	-	0.0022	17.5	0.2	0.0042	16.5	0.2	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
UPF0079	PF02367.12	gi|385802670|ref|YP_005839070.1|	-	0.0048	16.5	0.3	0.012	15.2	0.1	1.7	2	0	0	2	2	2	1	Uncharacterised	P-loop	hydrolase	UPF0079
SMC_N	PF02463.14	gi|385802670|ref|YP_005839070.1|	-	0.0062	15.7	0.0	0.024	13.8	0.0	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
DUF258	PF03193.11	gi|385802670|ref|YP_005839070.1|	-	0.0066	15.6	0.1	0.015	14.5	0.1	1.7	1	1	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_22	PF13401.1	gi|385802670|ref|YP_005839070.1|	-	0.0077	16.3	0.3	0.073	13.2	0.2	2.2	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.7	gi|385802670|ref|YP_005839070.1|	-	0.0097	15.0	0.0	0.029	13.4	0.0	1.8	2	0	0	2	2	2	1	Zeta	toxin
Arch_ATPase	PF01637.13	gi|385802670|ref|YP_005839070.1|	-	0.013	15.1	0.0	0.025	14.2	0.0	1.4	1	0	0	1	1	1	0	Archaeal	ATPase
AAA	PF00004.24	gi|385802670|ref|YP_005839070.1|	-	0.017	15.3	0.0	0.063	13.4	0.0	2.0	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
cobW	PF02492.14	gi|385802670|ref|YP_005839070.1|	-	0.034	13.6	0.2	0.087	12.2	0.2	1.7	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_14	PF13173.1	gi|385802670|ref|YP_005839070.1|	-	0.034	14.0	0.0	0.12	12.2	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.1	gi|385802670|ref|YP_005839070.1|	-	0.04	13.7	0.0	0.091	12.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_19	PF13245.1	gi|385802670|ref|YP_005839070.1|	-	0.056	13.1	0.5	0.22	11.2	0.1	2.2	2	0	0	2	2	2	0	Part	of	AAA	domain
Stimulus_sens_1	PF13756.1	gi|385802670|ref|YP_005839070.1|	-	0.072	13.4	0.0	13	6.1	0.0	2.6	2	0	0	2	2	2	0	Stimulus-sensing	domain
MobB	PF03205.9	gi|385802670|ref|YP_005839070.1|	-	0.076	12.7	0.3	0.23	11.1	0.2	1.8	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_17	PF13207.1	gi|385802670|ref|YP_005839070.1|	-	0.082	13.7	0.1	0.23	12.2	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
ABC_cobalt	PF09819.4	gi|385802672|ref|YP_005839072.1|	-	2.4	8.1	9.4	9.6	6.1	6.5	1.8	1	1	0	1	1	1	0	ABC-type	cobalt	transport	system,	permease	component
DUF3084	PF11283.3	gi|385802672|ref|YP_005839072.1|	-	8.6	6.3	8.2	2.6	7.9	0.3	3.0	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF3084)
FAD_binding_7	PF03441.9	gi|385802673|ref|YP_005839073.1|	-	1.2e-81	274.0	0.2	1.5e-81	273.7	0.2	1.1	1	0	0	1	1	1	1	FAD	binding	domain	of	DNA	photolyase
DNA_photolyase	PF00875.13	gi|385802673|ref|YP_005839073.1|	-	8.4e-36	123.2	0.1	1.3e-35	122.5	0.0	1.3	1	0	0	1	1	1	1	DNA	photolyase
Usp	PF00582.21	gi|385802673|ref|YP_005839073.1|	-	0.021	15.0	0.1	0.043	14.0	0.0	1.5	1	0	0	1	1	1	0	Universal	stress	protein	family
F420_oxidored	PF03807.12	gi|385802674|ref|YP_005839074.1|	-	2.3e-19	69.5	0.0	4e-19	68.8	0.0	1.4	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
adh_short	PF00106.20	gi|385802674|ref|YP_005839074.1|	-	0.0044	16.9	2.9	0.018	14.9	0.0	2.5	2	1	0	2	2	2	1	short	chain	dehydrogenase
NAD_Gly3P_dh_N	PF01210.18	gi|385802674|ref|YP_005839074.1|	-	0.0099	15.6	0.0	0.021	14.5	0.0	1.5	2	0	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
PDH	PF02153.12	gi|385802674|ref|YP_005839074.1|	-	0.011	14.6	0.1	0.017	14.0	0.0	1.3	1	0	0	1	1	1	0	Prephenate	dehydrogenase
KR	PF08659.5	gi|385802674|ref|YP_005839074.1|	-	0.029	14.0	0.3	0.072	12.7	0.0	1.7	2	1	0	2	2	2	0	KR	domain
Bac_luciferase	PF00296.15	gi|385802674|ref|YP_005839074.1|	-	0.032	13.3	0.3	0.058	12.5	0.2	1.5	1	1	0	1	1	1	0	Luciferase-like	monooxygenase
Semialdhyde_dh	PF01118.19	gi|385802674|ref|YP_005839074.1|	-	0.065	13.5	0.0	0.11	12.8	0.0	1.4	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.11	gi|385802674|ref|YP_005839074.1|	-	0.12	11.8	0.0	0.18	11.2	0.0	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
PRA-PH	PF01503.12	gi|385802675|ref|YP_005839075.1|	-	9.4e-10	38.6	0.4	1.1e-09	38.4	0.3	1.1	1	0	0	1	1	1	1	Phosphoribosyl-ATP	pyrophosphohydrolase
MazG	PF03819.12	gi|385802675|ref|YP_005839075.1|	-	0.006	16.5	0.4	0.0078	16.1	0.3	1.2	1	0	0	1	1	1	1	MazG	nucleotide	pyrophosphohydrolase	domain
Toxin_35	PF10530.4	gi|385802675|ref|YP_005839075.1|	-	0.1	12.7	4.7	0.15	12.1	3.2	1.2	1	0	0	1	1	1	0	Toxin	with	inhibitor	cystine	knot	ICK	or	Knottin	scaffold
SNO	PF01174.14	gi|385802676|ref|YP_005839076.1|	-	1.1e-50	171.8	0.0	1.3e-50	171.6	0.0	1.0	1	0	0	1	1	1	1	SNO	glutamine	amidotransferase	family
GATase_3	PF07685.9	gi|385802676|ref|YP_005839076.1|	-	1.3e-10	41.1	0.0	2.2e-10	40.3	0.0	1.5	1	1	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
Peptidase_S51	PF03575.12	gi|385802676|ref|YP_005839076.1|	-	7.9e-05	22.4	0.0	0.00011	21.9	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	S51
GATase	PF00117.23	gi|385802676|ref|YP_005839076.1|	-	0.00029	20.3	0.0	0.00053	19.4	0.0	1.4	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
DJ-1_PfpI	PF01965.19	gi|385802676|ref|YP_005839076.1|	-	0.00035	20.0	0.1	0.00052	19.5	0.1	1.5	1	1	0	1	1	1	1	DJ-1/PfpI	family
BPL_N	PF09825.4	gi|385802676|ref|YP_005839076.1|	-	0.015	14.0	0.0	0.15	10.8	0.0	2.0	2	0	0	2	2	2	0	Biotin-protein	ligase,	N	terminal
DUF4066	PF13278.1	gi|385802676|ref|YP_005839076.1|	-	0.02	14.1	0.1	0.036	13.3	0.1	1.4	1	0	0	1	1	1	0	Putative	amidotransferase
Aconitase	PF00330.15	gi|385802676|ref|YP_005839076.1|	-	0.068	11.6	0.0	0.091	11.2	0.0	1.1	1	0	0	1	1	1	0	Aconitase	family	(aconitate	hydratase)
Sec61_beta	PF03911.11	gi|385802677|ref|YP_005839077.1|	-	1.2e-08	34.5	0.0	1.6e-08	34.2	0.0	1.2	1	0	0	1	1	1	1	Sec61beta	family
SnoaL_2	PF12680.2	gi|385802678|ref|YP_005839078.1|	-	1.8e-09	37.9	3.2	2.2e-09	37.6	2.2	1.1	1	0	0	1	1	1	1	SnoaL-like	domain
SnoaL_3	PF13474.1	gi|385802678|ref|YP_005839078.1|	-	2e-06	27.8	1.7	2.3e-06	27.6	1.2	1.1	1	0	0	1	1	1	1	SnoaL-like	domain
DUF4440	PF14534.1	gi|385802678|ref|YP_005839078.1|	-	0.00017	21.7	1.5	0.00023	21.3	1.0	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4440)
LEH	PF07858.7	gi|385802678|ref|YP_005839078.1|	-	0.0041	17.1	0.5	0.012	15.6	0.3	1.7	1	1	0	1	1	1	1	Limonene-1,2-epoxide	hydrolase	catalytic	domain
FRD2	PF03197.8	gi|385802678|ref|YP_005839078.1|	-	0.087	13.3	0.7	0.14	12.7	0.3	1.3	1	1	0	1	1	1	0	Bacteriophage	FRD2	protein
NTF2	PF02136.15	gi|385802678|ref|YP_005839078.1|	-	0.089	13.1	0.1	0.12	12.8	0.1	1.3	1	1	0	1	1	1	0	Nuclear	transport	factor	2	(NTF2)	domain
HHH_5	PF14520.1	gi|385802679|ref|YP_005839079.1|	-	3.7e-07	30.2	0.4	9.9e-07	28.8	0.2	1.7	1	1	1	2	2	2	1	Helix-hairpin-helix	domain
HHH_2	PF12826.2	gi|385802679|ref|YP_005839079.1|	-	0.00065	19.5	0.9	0.0036	17.1	0.0	2.1	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
DUF896	PF05979.7	gi|385802679|ref|YP_005839079.1|	-	0.014	14.9	0.3	0.033	13.7	0.2	1.7	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF896)
HHH	PF00633.18	gi|385802679|ref|YP_005839079.1|	-	0.099	12.3	0.1	0.7	9.7	0.0	2.2	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
ABC_tran	PF00005.22	gi|385802681|ref|YP_005839081.1|	-	9.2e-33	113.4	0.0	2e-32	112.3	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|385802681|ref|YP_005839081.1|	-	5.8e-19	68.2	0.5	1.3e-18	67.0	0.3	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|385802681|ref|YP_005839081.1|	-	1.5e-07	31.7	0.2	4.1e-05	23.6	0.1	2.2	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|385802681|ref|YP_005839081.1|	-	0.0048	16.1	0.2	0.023	13.9	0.1	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|385802681|ref|YP_005839081.1|	-	0.0062	16.0	0.6	0.011	15.2	0.4	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.1	gi|385802681|ref|YP_005839081.1|	-	0.053	13.6	1.6	0.72	9.9	1.1	2.3	1	1	0	1	1	1	0	AAA	domain
AIG1	PF04548.11	gi|385802681|ref|YP_005839081.1|	-	0.058	12.4	0.4	0.097	11.7	0.3	1.3	1	0	0	1	1	1	0	AIG1	family
DUF258	PF03193.11	gi|385802681|ref|YP_005839081.1|	-	0.082	12.0	0.6	0.29	10.3	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
SbcCD_C	PF13558.1	gi|385802681|ref|YP_005839081.1|	-	0.11	12.3	0.1	0.77	9.7	0.1	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
ABC_tran	PF00005.22	gi|385802682|ref|YP_005839082.1|	-	1.5e-24	86.8	0.0	2.5e-24	86.1	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|385802682|ref|YP_005839082.1|	-	9.9e-17	61.0	0.0	2e-16	60.0	0.0	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|385802682|ref|YP_005839082.1|	-	1.3e-08	35.1	0.1	3.2e-07	30.6	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_10	PF12846.2	gi|385802682|ref|YP_005839082.1|	-	0.0001	21.8	0.0	0.0083	15.5	0.0	2.0	1	1	1	2	2	2	1	AAA-like	domain
AAA_22	PF13401.1	gi|385802682|ref|YP_005839082.1|	-	0.0022	18.1	0.5	2.3	8.3	0.1	2.5	2	1	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|385802682|ref|YP_005839082.1|	-	0.0054	16.7	0.2	0.023	14.6	0.1	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
ATP-synt_ab	PF00006.20	gi|385802682|ref|YP_005839082.1|	-	0.023	14.2	0.0	0.033	13.7	0.0	1.4	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_29	PF13555.1	gi|385802682|ref|YP_005839082.1|	-	0.061	12.8	0.1	0.12	11.8	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|385802682|ref|YP_005839082.1|	-	0.066	12.6	0.1	0.14	11.5	0.0	1.5	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_15	PF13175.1	gi|385802682|ref|YP_005839082.1|	-	0.16	10.9	0.0	0.16	10.9	0.0	2.2	3	0	0	3	3	3	0	AAA	ATPase	domain
DUF87	PF01935.12	gi|385802682|ref|YP_005839082.1|	-	0.37	10.5	2.4	0.34	10.6	0.3	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF87
BPD_transp_1	PF00528.17	gi|385802683|ref|YP_005839083.1|	-	3.1e-29	101.7	16.1	3.1e-29	101.7	11.2	2.2	2	1	1	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.2	gi|385802683|ref|YP_005839083.1|	-	4e-10	38.9	0.9	1.5e-09	37.0	0.1	2.4	2	0	0	2	2	2	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
BPD_transp_1	PF00528.17	gi|385802684|ref|YP_005839084.1|	-	2.6e-37	128.1	10.5	2.6e-37	128.1	7.3	1.7	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_5	PF00496.17	gi|385802685|ref|YP_005839085.1|	-	6.9e-50	169.9	0.3	9.8e-50	169.4	0.2	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.4	gi|385802685|ref|YP_005839085.1|	-	0.0019	18.0	0.6	0.0051	16.7	0.4	1.8	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
LPAM_2	PF13627.1	gi|385802685|ref|YP_005839085.1|	-	3.2	7.5	6.0	5.1	6.9	4.2	1.3	1	0	0	1	1	1	0	Prokaryotic	lipoprotein-attachment	site
AA_permease_2	PF13520.1	gi|385802688|ref|YP_005839088.1|	-	2.5e-57	194.3	48.8	3.1e-57	194.0	33.8	1.0	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|385802688|ref|YP_005839088.1|	-	1.1e-49	169.0	44.6	1.5e-49	168.6	30.9	1.2	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease_C	PF13906.1	gi|385802688|ref|YP_005839088.1|	-	9.3e-06	25.4	5.3	9.3e-06	25.4	3.7	4.0	5	0	0	5	5	5	1	C-terminus	of	AA_permease
TrkA_C	PF02080.16	gi|385802690|ref|YP_005839090.1|	-	2.6e-12	46.1	0.1	6.3e-12	44.9	0.0	1.6	1	0	0	1	1	1	1	TrkA-C	domain
HTH_24	PF13412.1	gi|385802690|ref|YP_005839090.1|	-	2.5e-11	42.7	0.0	4.2e-11	42.0	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|385802690|ref|YP_005839090.1|	-	4.8e-08	32.4	0.0	8.8e-08	31.5	0.0	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_20	PF12840.2	gi|385802690|ref|YP_005839090.1|	-	1.6e-06	27.7	0.0	3.7e-06	26.6	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|385802690|ref|YP_005839090.1|	-	2.1e-06	27.2	0.0	3.8e-06	26.4	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.2	gi|385802690|ref|YP_005839090.1|	-	3.4e-06	26.6	0.0	2.8e-05	23.6	0.0	2.3	2	0	0	2	2	2	1	MarR	family
HTH_DeoR	PF08220.7	gi|385802690|ref|YP_005839090.1|	-	0.0014	18.1	0.0	0.0034	16.8	0.0	1.7	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|385802690|ref|YP_005839090.1|	-	0.0025	17.3	0.0	0.013	15.0	0.0	2.0	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.15	gi|385802690|ref|YP_005839090.1|	-	0.0027	17.7	0.0	0.008	16.2	0.0	1.7	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_27	PF13463.1	gi|385802690|ref|YP_005839090.1|	-	0.0095	16.2	0.0	0.021	15.1	0.0	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.15	gi|385802690|ref|YP_005839090.1|	-	0.014	15.0	0.0	0.028	14.0	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_28	PF13518.1	gi|385802690|ref|YP_005839090.1|	-	0.014	15.3	0.0	0.028	14.4	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|385802690|ref|YP_005839090.1|	-	0.027	14.3	0.0	0.049	13.5	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_23	PF13384.1	gi|385802690|ref|YP_005839090.1|	-	0.065	12.9	0.0	0.13	11.9	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
MarR	PF01047.17	gi|385802690|ref|YP_005839090.1|	-	0.07	12.8	0.0	0.17	11.6	0.0	1.6	1	0	0	1	1	1	0	MarR	family
DUF2250	PF10007.4	gi|385802690|ref|YP_005839090.1|	-	0.077	12.9	0.0	0.23	11.3	0.0	1.7	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
DUF4423	PF14394.1	gi|385802690|ref|YP_005839090.1|	-	0.11	12.0	0.0	0.18	11.3	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HTH_13	PF11972.3	gi|385802690|ref|YP_005839090.1|	-	0.13	12.0	0.0	0.29	11.0	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
4HBT	PF03061.17	gi|385802693|ref|YP_005839093.1|	-	1.2e-14	54.1	0.2	1.6e-14	53.7	0.1	1.2	1	0	0	1	1	1	1	Thioesterase	superfamily
zf-C2H2_4	PF13894.1	gi|385802694|ref|YP_005839094.1|	-	0.0016	18.6	0.0	0.038	14.3	0.0	2.4	2	0	0	2	2	2	1	C2H2-type	zinc	finger
zf-Di19	PF05605.7	gi|385802694|ref|YP_005839094.1|	-	0.0021	18.1	0.2	0.0035	17.4	0.2	1.4	1	0	0	1	1	1	1	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2	PF00096.21	gi|385802694|ref|YP_005839094.1|	-	0.0028	17.9	0.8	0.042	14.2	0.0	2.4	2	0	0	2	2	2	1	Zinc	finger,	C2H2	type
zf-C2H2_2	PF12756.2	gi|385802694|ref|YP_005839094.1|	-	0.0084	16.2	0.3	0.017	15.2	0.2	1.6	1	0	0	1	1	1	1	C2H2	type	zinc-finger	(2	copies)
HypA	PF01155.14	gi|385802694|ref|YP_005839094.1|	-	0.021	14.4	0.2	0.044	13.4	0.1	1.5	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
DUF3797	PF12677.2	gi|385802694|ref|YP_005839094.1|	-	0.045	13.3	1.5	0.12	12.0	0.1	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3797)
Elf1	PF05129.8	gi|385802694|ref|YP_005839094.1|	-	0.054	13.1	1.1	3.1	7.5	0.1	2.3	1	1	1	2	2	2	0	Transcription	elongation	factor	Elf1	like
HNH	PF01844.18	gi|385802694|ref|YP_005839094.1|	-	0.19	11.6	1.4	10	6.1	0.1	2.6	2	0	0	2	2	2	0	HNH	endonuclease
NOB1_Zn_bind	PF08772.6	gi|385802694|ref|YP_005839094.1|	-	0.2	11.4	1.2	0.37	10.6	0.1	2.0	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Zn-ribbon_8	PF09723.5	gi|385802694|ref|YP_005839094.1|	-	0.73	9.8	3.8	38	4.3	2.6	2.4	1	1	0	1	1	1	0	Zinc	ribbon	domain
DUF4215	PF13948.1	gi|385802694|ref|YP_005839094.1|	-	0.97	9.6	4.4	6.3	7.0	0.3	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4215)
DUF1610	PF07754.6	gi|385802694|ref|YP_005839094.1|	-	8.5	6.5	6.8	23	5.1	1.7	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
DUF3891	PF13030.1	gi|385802695|ref|YP_005839095.1|	-	8.6e-68	228.1	0.0	1e-67	227.8	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3891)
Thioredoxin	PF00085.15	gi|385802696|ref|YP_005839096.1|	-	1.9e-22	78.9	0.0	2.2e-22	78.7	0.0	1.0	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_8	PF13905.1	gi|385802696|ref|YP_005839096.1|	-	1.4e-08	34.6	0.1	7.6e-05	22.7	0.0	2.1	1	1	1	2	2	2	2	Thioredoxin-like
Thioredoxin_2	PF13098.1	gi|385802696|ref|YP_005839096.1|	-	8.9e-07	29.0	0.1	1.2e-05	25.4	0.1	1.9	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_3	PF13192.1	gi|385802696|ref|YP_005839096.1|	-	1.4e-05	24.7	0.0	1.6e-05	24.6	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin	domain
Thioredoxin_9	PF14595.1	gi|385802696|ref|YP_005839096.1|	-	4.5e-05	23.0	0.0	4.9e-05	22.8	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Redoxin	PF08534.5	gi|385802696|ref|YP_005839096.1|	-	5.1e-05	22.8	0.2	0.0021	17.5	0.0	2.0	1	1	1	2	2	2	2	Redoxin
AhpC-TSA	PF00578.16	gi|385802696|ref|YP_005839096.1|	-	0.00037	20.1	0.3	0.2	11.3	0.0	2.0	1	1	1	2	2	2	2	AhpC/TSA	family
Glutaredoxin	PF00462.19	gi|385802696|ref|YP_005839096.1|	-	0.00045	20.1	0.1	0.00075	19.4	0.1	1.5	1	1	0	1	1	1	1	Glutaredoxin
Thioredoxin_7	PF13899.1	gi|385802696|ref|YP_005839096.1|	-	0.0029	17.6	0.7	0.0077	16.2	0.1	2.0	2	1	0	2	2	2	1	Thioredoxin-like
DUF836	PF05768.9	gi|385802696|ref|YP_005839096.1|	-	0.025	14.8	0.1	0.03	14.5	0.1	1.1	1	0	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
DSBA	PF01323.15	gi|385802696|ref|YP_005839096.1|	-	0.039	13.5	0.4	1.2	8.6	0.0	1.9	1	1	1	2	2	2	0	DSBA-like	thioredoxin	domain
Thioredoxin_5	PF13743.1	gi|385802696|ref|YP_005839096.1|	-	0.077	12.5	0.0	0.086	12.4	0.0	1.2	1	0	0	1	1	1	0	Thioredoxin
Phosducin	PF02114.11	gi|385802696|ref|YP_005839096.1|	-	0.093	11.4	0.0	0.1	11.3	0.0	1.0	1	0	0	1	1	1	0	Phosducin
TraF	PF13728.1	gi|385802696|ref|YP_005839096.1|	-	0.12	11.8	0.0	0.14	11.5	0.0	1.2	1	0	0	1	1	1	0	F	plasmid	transfer	operon	protein
Ribosomal_L40e	PF01020.12	gi|385802697|ref|YP_005839097.1|	-	4.5e-08	32.5	5.3	5.2e-08	32.3	3.7	1.1	1	0	0	1	1	1	1	Ribosomal	L40e	family
DZR	PF12773.2	gi|385802697|ref|YP_005839097.1|	-	0.00072	19.3	1.6	0.00078	19.2	1.1	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-DHHC	PF01529.15	gi|385802697|ref|YP_005839097.1|	-	0.0011	18.4	1.7	0.0011	18.4	1.2	1.0	1	0	0	1	1	1	1	DHHC	palmitoyltransferase
zinc_ribbon_2	PF13240.1	gi|385802697|ref|YP_005839097.1|	-	0.017	14.6	1.4	0.023	14.1	1.0	1.2	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|385802697|ref|YP_005839097.1|	-	0.03	13.5	1.3	0.037	13.2	0.9	1.2	1	0	0	1	1	1	0	zinc-ribbon	domain
SelP_N	PF04592.9	gi|385802697|ref|YP_005839097.1|	-	0.092	12.1	0.5	0.096	12.0	0.4	1.0	1	0	0	1	1	1	0	Selenoprotein	P,	N	terminal	region
zf-RanBP	PF00641.13	gi|385802697|ref|YP_005839097.1|	-	0.19	10.8	4.8	0.57	9.3	3.4	1.8	1	1	0	1	1	1	0	Zn-finger	in	Ran	binding	protein	and	others
Toxin_5	PF05294.8	gi|385802697|ref|YP_005839097.1|	-	0.2	11.8	2.5	0.28	11.4	1.7	1.2	1	0	0	1	1	1	0	Scorpion	short	toxin
HypA	PF01155.14	gi|385802697|ref|YP_005839097.1|	-	0.26	10.9	1.5	0.27	10.9	1.1	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
DNA_RNApol_7kD	PF03604.8	gi|385802697|ref|YP_005839097.1|	-	0.36	10.3	5.2	1	8.8	3.6	1.7	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
RNA_POL_M_15KD	PF02150.11	gi|385802697|ref|YP_005839097.1|	-	0.85	9.3	6.0	4.8	6.9	4.1	2.0	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
HTH_IclR	PF09339.5	gi|385802700|ref|YP_005839100.1|	-	6.5e-05	22.4	0.0	0.00017	21.0	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_34	PF13601.1	gi|385802700|ref|YP_005839100.1|	-	9.5e-05	22.3	0.0	0.00019	21.4	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_27	PF13463.1	gi|385802700|ref|YP_005839100.1|	-	0.00016	21.9	0.4	0.00038	20.7	0.1	1.8	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
MarR	PF01047.17	gi|385802700|ref|YP_005839100.1|	-	0.00028	20.5	0.1	0.0011	18.6	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_20	PF12840.2	gi|385802700|ref|YP_005839100.1|	-	0.00036	20.2	0.1	0.0013	18.4	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|385802700|ref|YP_005839100.1|	-	0.00036	20.1	0.0	0.00058	19.4	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.2	gi|385802700|ref|YP_005839100.1|	-	0.00086	18.9	0.0	0.0019	17.8	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|385802700|ref|YP_005839100.1|	-	0.012	14.9	0.0	0.022	14.1	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Fe_dep_repress	PF01325.14	gi|385802700|ref|YP_005839100.1|	-	0.02	14.7	0.1	0.045	13.7	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TrmB	PF01978.14	gi|385802700|ref|YP_005839100.1|	-	0.025	14.2	0.0	0.054	13.2	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.7	gi|385802700|ref|YP_005839100.1|	-	0.085	12.5	0.1	0.19	11.3	0.0	1.6	1	0	0	1	1	1	0	HTH	domain
Rrf2	PF02082.15	gi|385802700|ref|YP_005839100.1|	-	0.11	12.5	0.0	0.23	11.5	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
DUF2276	PF10040.4	gi|385802701|ref|YP_005839101.1|	-	1.1e-22	80.5	0.0	1.6e-22	79.9	0.0	1.3	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2276)
DUF187	PF02638.10	gi|385802701|ref|YP_005839101.1|	-	0.14	10.9	0.0	0.22	10.3	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	hydrolase	like	GH101
DEAD	PF00270.24	gi|385802705|ref|YP_005839105.1|	-	5.4e-10	39.0	0.0	1.6e-09	37.5	0.0	1.7	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
ResIII	PF04851.10	gi|385802705|ref|YP_005839105.1|	-	5.8e-06	26.2	0.0	5.2e-05	23.1	0.0	2.3	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.26	gi|385802705|ref|YP_005839105.1|	-	0.022	14.6	0.1	0.065	13.1	0.0	1.8	1	0	0	1	1	1	0	Helicase	conserved	C-terminal	domain
Ead_Ea22	PF13935.1	gi|385802705|ref|YP_005839105.1|	-	0.092	13.0	0.8	0.32	11.3	0.0	2.2	2	1	0	2	2	2	0	Ead/Ea22-like	protein
Cas_Cas4	PF01930.12	gi|385802706|ref|YP_005839106.1|	-	9e-25	87.4	0.1	1e-24	87.2	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.2	gi|385802706|ref|YP_005839106.1|	-	2e-12	47.0	4.0	8.2e-09	35.2	0.0	2.0	1	1	1	2	2	2	2	PD-(D/E)XK	nuclease	superfamily
DUF911	PF06023.7	gi|385802706|ref|YP_005839106.1|	-	0.023	13.9	0.0	0.029	13.5	0.0	1.2	1	0	0	1	1	1	0	Archaeal	protein	of	unknown	function	(DUF911)
FANCI_S1	PF14675.1	gi|385802706|ref|YP_005839106.1|	-	0.08	12.2	0.0	0.12	11.7	0.0	1.2	1	0	0	1	1	1	0	FANCI	solenoid	1
DUF3302	PF11742.3	gi|385802706|ref|YP_005839106.1|	-	0.12	12.1	0.0	6.4	6.7	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3302)
Cas_Cas1	PF01867.11	gi|385802707|ref|YP_005839107.1|	-	3.7e-72	242.7	0.0	4.6e-72	242.4	0.0	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
CRISPR_Cas2	PF09827.4	gi|385802708|ref|YP_005839108.1|	-	2e-22	79.1	0.2	2.2e-22	78.9	0.1	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas2
Ub-RnfH	PF03658.9	gi|385802708|ref|YP_005839108.1|	-	0.13	12.1	0.8	1.5	8.7	0.1	2.4	1	1	2	3	3	3	0	RnfH	family	Ubiquitin
Phage_integrase	PF00589.17	gi|385802709|ref|YP_005839109.1|	-	3.2e-15	56.2	0.3	8.1e-15	54.9	0.2	1.6	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.12	gi|385802709|ref|YP_005839109.1|	-	3.1e-05	24.0	2.0	0.00079	19.5	0.3	2.1	1	1	1	2	2	2	2	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.1	gi|385802709|ref|YP_005839109.1|	-	9.4e-05	22.6	0.7	0.00027	21.2	0.5	1.8	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_2	PF12834.2	gi|385802709|ref|YP_005839109.1|	-	0.014	15.7	0.1	6.8	7.1	0.0	3.1	2	2	1	3	3	3	0	Phage	integrase,	N-terminal
DDE_Tnp_1	PF01609.16	gi|385802711|ref|YP_005839111.1|	-	1.3e-15	57.5	1.7	2.6e-15	56.5	1.2	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.1	gi|385802711|ref|YP_005839111.1|	-	0.00012	22.1	1.1	0.0003	20.8	0.2	2.0	2	0	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_1_3	PF13612.1	gi|385802711|ref|YP_005839111.1|	-	0.00031	20.5	0.0	0.00051	19.8	0.0	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.1	gi|385802711|ref|YP_005839111.1|	-	0.012	15.6	0.2	0.024	14.6	0.2	1.5	1	0	0	1	1	1	0	Transposase	DDE	domain
Nif11	PF07862.6	gi|385802711|ref|YP_005839111.1|	-	0.12	12.3	0.3	0.57	10.1	0.1	2.1	2	0	0	2	2	2	0	Nitrogen	fixation	protein	of	unknown	function
N6_N4_Mtase	PF01555.13	gi|385802712|ref|YP_005839112.1|	-	2.8e-22	79.3	0.0	7.9e-14	51.7	0.0	2.3	2	0	0	2	2	2	2	DNA	methylase
Methyltransf_26	PF13659.1	gi|385802712|ref|YP_005839112.1|	-	3.3e-13	49.6	0.0	6.5e-12	45.5	0.0	2.4	1	1	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|385802712|ref|YP_005839112.1|	-	5.5e-08	32.5	0.0	0.0013	18.3	0.0	2.3	2	0	0	2	2	2	2	Putative	RNA	methylase	family	UPF0020
MethyltransfD12	PF02086.10	gi|385802712|ref|YP_005839112.1|	-	0.00017	21.1	0.0	0.00048	19.6	0.0	1.7	2	0	0	2	2	1	1	D12	class	N6	adenine-specific	DNA	methyltransferase
Cons_hypoth95	PF03602.10	gi|385802712|ref|YP_005839112.1|	-	0.0034	16.8	0.0	0.99	8.7	0.0	2.5	2	0	0	2	2	2	1	Conserved	hypothetical	protein	95
MTS	PF05175.9	gi|385802712|ref|YP_005839112.1|	-	0.0037	16.6	0.0	3.2	7.1	0.0	3.3	2	1	0	2	2	2	1	Methyltransferase	small	domain
Methyltransf_11	PF08241.7	gi|385802712|ref|YP_005839112.1|	-	0.0063	16.9	0.0	0.88	10.0	0.0	3.3	4	0	0	4	4	3	1	Methyltransferase	domain
zinc_ribbon_5	PF13719.1	gi|385802712|ref|YP_005839112.1|	-	0.0078	15.7	0.3	0.0078	15.7	0.2	3.1	3	0	0	3	3	3	1	zinc-ribbon	domain
zf-FPG_IleRS	PF06827.9	gi|385802712|ref|YP_005839112.1|	-	0.012	15.1	1.0	0.083	12.5	0.7	2.4	1	1	0	1	1	1	0	Zinc	finger	found	in	FPG	and	IleRS
zinc_ribbon_4	PF13717.1	gi|385802712|ref|YP_005839112.1|	-	0.02	14.5	0.2	0.02	14.5	0.2	3.1	3	0	0	3	3	3	0	zinc-ribbon	domain
Methyltransf_31	PF13847.1	gi|385802712|ref|YP_005839112.1|	-	0.035	13.6	0.0	9.8	5.7	0.0	2.5	2	0	0	2	2	2	0	Methyltransferase	domain
Elf1	PF05129.8	gi|385802712|ref|YP_005839112.1|	-	0.04	13.6	6.5	0.18	11.4	0.0	3.2	1	1	2	3	3	3	0	Transcription	elongation	factor	Elf1	like
C1_4	PF07975.7	gi|385802712|ref|YP_005839112.1|	-	0.11	12.5	5.5	0.42	10.6	0.1	2.6	2	0	0	2	2	2	0	TFIIH	C1-like	domain
Zn-ribbon_8	PF09723.5	gi|385802712|ref|YP_005839112.1|	-	0.26	11.2	13.1	8.1	6.4	0.1	3.8	3	1	0	3	3	3	0	Zinc	ribbon	domain
HypA	PF01155.14	gi|385802712|ref|YP_005839112.1|	-	0.75	9.4	9.8	5.4	6.7	2.6	2.7	1	1	1	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
Lar_restr_allev	PF14354.1	gi|385802712|ref|YP_005839112.1|	-	0.9	9.8	14.3	12	6.2	4.8	3.7	2	2	0	2	2	2	0	Restriction	alleviation	protein	Lar
TF_Zn_Ribbon	PF08271.7	gi|385802712|ref|YP_005839112.1|	-	0.93	8.8	6.1	3.8	6.8	1.3	3.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-H2C2_2	PF13465.1	gi|385802712|ref|YP_005839112.1|	-	1.6	9.1	5.6	13	6.3	0.0	3.4	2	1	1	3	3	3	0	Zinc-finger	double	domain
Zn_Tnp_IS1595	PF12760.2	gi|385802712|ref|YP_005839112.1|	-	1.9	8.3	16.6	0.11	12.3	0.7	3.1	2	1	0	2	2	2	0	Transposase	zinc-ribbon	domain
zinc_ribbon_6	PF14599.1	gi|385802712|ref|YP_005839112.1|	-	4.4	7.1	7.4	1.5	8.6	1.0	2.6	1	1	1	2	2	2	0	Zinc-ribbon
DnaJ_CXXCXGXG	PF00684.14	gi|385802712|ref|YP_005839112.1|	-	4.7	7.3	10.0	3.7	7.6	4.3	2.3	1	1	1	2	2	2	0	DnaJ	central	domain
zf-CHY	PF05495.7	gi|385802712|ref|YP_005839112.1|	-	6.5	7.0	8.3	84	3.4	0.8	2.2	1	1	1	2	2	2	0	CHY	zinc	finger
Methyltransf_26	PF13659.1	gi|385802713|ref|YP_005839113.1|	-	1e-14	54.5	0.0	2.2e-14	53.4	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
N6_Mtase	PF02384.11	gi|385802713|ref|YP_005839113.1|	-	2.1e-11	43.4	0.0	3.4e-11	42.8	0.0	1.3	1	0	0	1	1	1	1	N-6	DNA	Methylase
Eco57I	PF07669.6	gi|385802713|ref|YP_005839113.1|	-	3e-07	30.7	0.0	5.8e-07	29.8	0.0	1.5	1	0	0	1	1	1	1	Eco57I	restriction-modification	methylase
UPF0020	PF01170.13	gi|385802713|ref|YP_005839113.1|	-	4.3e-05	23.1	0.0	7.9e-05	22.3	0.0	1.3	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_25	PF13649.1	gi|385802713|ref|YP_005839113.1|	-	0.00018	21.8	0.0	0.00098	19.4	0.0	2.1	2	0	0	2	2	2	1	Methyltransferase	domain
MTS	PF05175.9	gi|385802713|ref|YP_005839113.1|	-	0.00054	19.3	0.0	0.0009	18.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
CusF_Ec	PF11604.3	gi|385802713|ref|YP_005839113.1|	-	0.015	15.1	0.0	0.036	13.9	0.0	1.6	1	0	0	1	1	1	0	Copper	binding	periplasmic	protein	CusF
Methyltransf_12	PF08242.7	gi|385802713|ref|YP_005839113.1|	-	0.016	15.6	0.0	0.034	14.6	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
AhpC-TSA	PF00578.16	gi|385802713|ref|YP_005839113.1|	-	0.054	13.1	0.0	0.12	12.0	0.0	1.5	1	0	0	1	1	1	0	AhpC/TSA	family
Methyltransf_15	PF09445.5	gi|385802713|ref|YP_005839113.1|	-	0.15	11.6	0.0	0.27	10.7	0.0	1.4	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
TBP	PF00352.16	gi|385802716|ref|YP_005839116.1|	-	9.7e-40	133.8	0.0	2.8e-21	74.6	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.3	gi|385802716|ref|YP_005839116.1|	-	0.0019	18.2	0.0	0.11	12.5	0.0	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF3378)
DUF2891	PF11199.3	gi|385802718|ref|YP_005839118.1|	-	0.044	12.3	0.2	0.06	11.9	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2891)
HEAT_2	PF13646.1	gi|385802719|ref|YP_005839119.1|	-	5e-24	84.3	15.3	1.5e-14	54.0	1.8	4.4	1	1	3	5	5	5	5	HEAT	repeats
Adaptin_N	PF01602.15	gi|385802719|ref|YP_005839119.1|	-	2.2e-17	62.5	0.1	2.9e-07	29.1	0.0	2.9	1	1	2	3	3	3	2	Adaptin	N	terminal	region
HEAT	PF02985.17	gi|385802719|ref|YP_005839119.1|	-	9.8e-15	53.2	6.8	0.012	15.6	0.0	7.3	6	1	0	7	7	7	3	HEAT	repeat
Cnd1	PF12717.2	gi|385802719|ref|YP_005839119.1|	-	2e-14	53.8	0.0	9.7e-06	25.5	0.0	3.8	2	2	1	3	3	3	3	non-SMC	mitotic	condensation	complex	subunit	1
HEAT_EZ	PF13513.1	gi|385802719|ref|YP_005839119.1|	-	1.2e-12	47.8	16.7	1.8e-05	25.0	0.0	6.1	2	1	5	7	7	7	4	HEAT-like	repeat
Arm	PF00514.18	gi|385802719|ref|YP_005839119.1|	-	5.4e-09	35.5	3.9	0.047	13.5	0.0	6.5	6	0	0	6	6	6	1	Armadillo/beta-catenin-like	repeat
HEAT_PBS	PF03130.11	gi|385802719|ref|YP_005839119.1|	-	2.5e-06	27.4	4.3	11	6.7	0.0	6.1	6	0	0	6	6	6	0	PBS	lyase	HEAT-like	repeat
Vac14_Fab1_bd	PF12755.2	gi|385802719|ref|YP_005839119.1|	-	9e-05	22.7	0.3	0.0062	16.9	0.0	3.4	3	1	1	4	4	4	1	Vacuolar	14	Fab1-binding	region
DUF2435	PF10363.4	gi|385802719|ref|YP_005839119.1|	-	0.00011	21.9	0.3	0.13	12.1	0.0	3.9	2	2	2	4	4	4	1	Protein	of	unknown	function	(DUF2435)
DUF1546	PF07571.8	gi|385802719|ref|YP_005839119.1|	-	0.00018	21.5	0.0	0.18	11.9	0.0	3.3	2	1	1	3	3	3	1	Protein	of	unknown	function	(DUF1546)
TPR_6	PF13174.1	gi|385802719|ref|YP_005839119.1|	-	0.00031	20.9	0.3	22	5.7	0.0	5.3	6	0	0	6	6	5	0	Tetratricopeptide	repeat
NUC130_3NT	PF08158.7	gi|385802719|ref|YP_005839119.1|	-	0.0018	18.5	0.0	13	6.1	0.0	4.2	4	0	0	4	4	4	0	NUC130/3NT	domain
Xpo1	PF08389.7	gi|385802719|ref|YP_005839119.1|	-	0.029	14.2	0.0	1.5	8.7	0.0	2.4	2	0	0	2	2	2	0	Exportin	1-like	protein
RasGEF_N_2	PF14663.1	gi|385802719|ref|YP_005839119.1|	-	0.16	11.9	0.1	6.2	6.7	0.0	3.2	2	2	1	4	4	4	0	Rapamycin-insensitive	companion	of	mTOR	RasGEF_N	domain
Nipped-B_C	PF12830.2	gi|385802719|ref|YP_005839119.1|	-	0.18	11.4	0.2	15	5.1	0.0	3.1	3	2	0	3	3	3	0	Sister	chromatid	cohesion	C-terminus
DUF91	PF01939.11	gi|385802720|ref|YP_005839120.1|	-	0.0004	19.6	0.1	0.0007	18.8	0.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF91
GTP_EFTU	PF00009.22	gi|385802721|ref|YP_005839121.1|	-	4.9e-42	143.5	0.2	7e-42	142.9	0.1	1.2	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
eIF2_C	PF09173.6	gi|385802721|ref|YP_005839121.1|	-	6.5e-27	93.4	0.0	1.5e-26	92.2	0.0	1.6	1	0	0	1	1	1	1	Initiation	factor	eIF2	gamma,	C	terminal
GTP_EFTU_D2	PF03144.20	gi|385802721|ref|YP_005839121.1|	-	5.8e-08	32.7	1.4	2.2e-07	30.8	1.0	2.0	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.18	gi|385802721|ref|YP_005839121.1|	-	0.00077	19.3	0.0	0.0014	18.5	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
PduV-EutP	PF10662.4	gi|385802721|ref|YP_005839121.1|	-	0.0019	17.7	1.0	0.098	12.1	0.0	2.3	2	0	0	2	2	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
Miro	PF08477.8	gi|385802721|ref|YP_005839121.1|	-	0.031	14.7	0.0	0.096	13.1	0.0	1.9	1	1	0	1	1	1	0	Miro-like	protein
FeoB_N	PF02421.13	gi|385802721|ref|YP_005839121.1|	-	0.031	13.5	1.3	4.5	6.5	0.0	2.5	2	1	0	2	2	2	0	Ferrous	iron	transport	protein	B
SRPRB	PF09439.5	gi|385802721|ref|YP_005839121.1|	-	0.13	11.4	0.0	9	5.4	0.0	2.2	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
DUF188	PF02639.9	gi|385802722|ref|YP_005839122.1|	-	0.0014	18.0	0.5	0.9	8.9	0.0	2.3	2	0	0	2	2	2	2	Uncharacterized	BCR,	YaiI/YqxD	family	COG1671
Fcf1	PF04900.7	gi|385802722|ref|YP_005839122.1|	-	0.002	18.1	0.0	2.3	8.3	0.0	2.2	2	0	0	2	2	2	2	Fcf1
CFIA_Pcf11	PF11526.3	gi|385802722|ref|YP_005839122.1|	-	1.8	8.7	4.2	19	5.4	2.9	2.1	1	1	0	1	1	1	0	Subunit	of	cleavage	factor	IA	Pcf11
SHS2_Rpb7-N	PF03876.12	gi|385802723|ref|YP_005839123.1|	-	2.7e-15	56.2	0.0	4.2e-15	55.6	0.0	1.3	1	0	0	1	1	1	1	SHS2	domain	found	in	N	terminus	of	Rpb7p/Rpc25p/MJ0397
S1	PF00575.18	gi|385802723|ref|YP_005839123.1|	-	1.5e-13	50.6	0.5	2.5e-13	49.8	0.3	1.4	1	0	0	1	1	1	1	S1	RNA	binding	domain
S1_2	PF13509.1	gi|385802723|ref|YP_005839123.1|	-	0.046	13.6	0.0	1.6	8.7	0.0	2.4	1	1	0	1	1	1	0	S1	domain
Spt4	PF06093.8	gi|385802724|ref|YP_005839124.1|	-	3.8e-14	52.3	0.2	4.4e-14	52.1	0.1	1.1	1	0	0	1	1	1	1	Spt4/RpoE2	zinc	finger
DZR	PF12773.2	gi|385802724|ref|YP_005839124.1|	-	0.00042	20.0	1.3	0.00052	19.7	0.9	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-RanBP	PF00641.13	gi|385802724|ref|YP_005839124.1|	-	0.0018	17.3	3.3	0.0025	16.8	2.3	1.3	1	0	0	1	1	1	1	Zn-finger	in	Ran	binding	protein	and	others
zf-ribbon_3	PF13248.1	gi|385802724|ref|YP_005839124.1|	-	0.029	13.5	2.1	0.075	12.2	1.6	1.5	1	1	1	2	2	2	0	zinc-ribbon	domain
HypA	PF01155.14	gi|385802724|ref|YP_005839124.1|	-	0.052	13.2	0.8	0.062	12.9	0.5	1.2	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
NOB1_Zn_bind	PF08772.6	gi|385802724|ref|YP_005839124.1|	-	0.092	12.5	0.1	0.097	12.5	0.1	1.2	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
ADH_N	PF08240.7	gi|385802724|ref|YP_005839124.1|	-	0.11	12.2	0.3	0.12	12.1	0.2	1.2	1	0	0	1	1	1	0	Alcohol	dehydrogenase	GroES-like	domain
TF_Zn_Ribbon	PF08271.7	gi|385802724|ref|YP_005839124.1|	-	0.12	11.7	0.4	0.36	10.1	0.0	1.9	2	0	0	2	2	2	0	TFIIB	zinc-binding
NCD3G	PF07562.9	gi|385802724|ref|YP_005839124.1|	-	0.13	11.9	2.8	0.19	11.4	1.9	1.2	1	0	0	1	1	1	0	Nine	Cysteines	Domain	of	family	3	GPCR
DUF2810	PF10928.3	gi|385802724|ref|YP_005839124.1|	-	0.14	11.9	0.0	0.17	11.6	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2810)
zinc_ribbon_2	PF13240.1	gi|385802724|ref|YP_005839124.1|	-	0.17	11.4	3.6	0.25	10.8	2.5	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-IS66	PF13005.2	gi|385802724|ref|YP_005839124.1|	-	0.22	11.5	2.2	6.1	6.9	0.1	2.2	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
DNA_RNApol_7kD	PF03604.8	gi|385802724|ref|YP_005839124.1|	-	0.4	10.1	3.6	5	6.6	2.7	2.1	1	1	1	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Nudix_N_2	PF14803.1	gi|385802724|ref|YP_005839124.1|	-	0.44	10.2	5.3	1.6	8.4	0.7	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
OrfB_Zn_ribbon	PF07282.6	gi|385802724|ref|YP_005839124.1|	-	0.96	9.1	5.9	4.4	7.0	0.6	2.1	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
RNA_POL_M_15KD	PF02150.11	gi|385802724|ref|YP_005839124.1|	-	1.3	8.7	4.9	1.1	8.9	0.2	2.1	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
DUF359	PF04019.7	gi|385802725|ref|YP_005839125.1|	-	7.4e-41	138.3	0.3	9.1e-41	138.0	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF359)
RHH_1	PF01402.16	gi|385802726|ref|YP_005839126.1|	-	0.0021	17.8	4.5	0.0036	17.1	0.8	2.5	2	1	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.2	gi|385802726|ref|YP_005839126.1|	-	0.0092	15.6	0.0	0.014	15.0	0.0	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	domain
Ribosomal_S24e	PF01282.14	gi|385802727|ref|YP_005839127.1|	-	3.3e-29	100.5	0.2	4e-29	100.2	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S24e
Phage_holin_T	PF11031.3	gi|385802727|ref|YP_005839127.1|	-	0.051	12.7	0.0	0.06	12.4	0.0	1.1	1	0	0	1	1	1	0	Bacteriophage	T	holin
DUF1762	PF08574.5	gi|385802727|ref|YP_005839127.1|	-	0.078	13.4	2.2	0.14	12.5	1.5	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1762)
hNIFK_binding	PF12196.3	gi|385802727|ref|YP_005839127.1|	-	0.27	10.6	2.0	0.51	9.7	0.1	2.1	2	0	0	2	2	2	0	FHA	Ki67	binding	domain	of	hNIFK
Peptidase_M22	PF00814.20	gi|385802728|ref|YP_005839128.1|	-	2.1e-72	243.8	0.0	3e-72	243.3	0.0	1.2	1	0	0	1	1	1	1	Glycoprotease	family
APH	PF01636.18	gi|385802728|ref|YP_005839128.1|	-	0.00028	20.7	7.1	0.027	14.1	0.4	2.3	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Kdo	PF06293.9	gi|385802728|ref|YP_005839128.1|	-	0.0029	16.6	0.1	0.017	14.2	0.0	1.9	2	0	0	2	2	2	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
RIO1	PF01163.17	gi|385802728|ref|YP_005839128.1|	-	0.036	13.4	0.0	0.08	12.2	0.0	1.5	1	1	0	1	1	1	0	RIO1	family
Ham1p_like	PF01725.11	gi|385802730|ref|YP_005839130.1|	-	7.8e-41	139.5	0.0	1.1e-40	139.1	0.0	1.2	1	0	0	1	1	1	1	Ham1	family
PIN_3	PF13470.1	gi|385802731|ref|YP_005839131.1|	-	0.0011	19.6	0.7	0.0046	17.6	0.5	2.0	1	1	0	1	1	1	1	PIN	domain
PEPCK_ATP	PF01293.15	gi|385802731|ref|YP_005839131.1|	-	0.0043	15.6	0.0	0.0063	15.0	0.0	1.2	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxykinase
Pex14_N	PF04695.8	gi|385802731|ref|YP_005839131.1|	-	0.082	12.9	0.2	0.12	12.3	0.1	1.2	1	0	0	1	1	1	0	Peroxisomal	membrane	anchor	protein	(Pex14p)	conserved	region
MCPVI	PF02993.9	gi|385802731|ref|YP_005839131.1|	-	0.097	12.8	0.2	0.15	12.2	0.1	1.2	1	0	0	1	1	1	0	Minor	capsid	protein	VI
TrkA_N	PF02254.13	gi|385802732|ref|YP_005839132.1|	-	4.5e-24	84.6	0.2	7e-24	84.0	0.2	1.3	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.16	gi|385802732|ref|YP_005839132.1|	-	4.8e-10	38.8	0.2	1.2e-09	37.6	0.1	1.6	1	0	0	1	1	1	1	TrkA-C	domain
UDPG_MGDP_dh_N	PF03721.9	gi|385802732|ref|YP_005839132.1|	-	1.4e-05	24.5	0.1	4.7e-05	22.8	0.1	1.7	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
XdhC_C	PF13478.1	gi|385802732|ref|YP_005839132.1|	-	0.00022	21.5	0.0	0.00038	20.7	0.0	1.6	1	1	0	1	1	1	1	XdhC	Rossmann	domain
3HCDH_N	PF02737.13	gi|385802732|ref|YP_005839132.1|	-	0.00034	20.2	0.1	0.00061	19.4	0.1	1.5	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|385802732|ref|YP_005839132.1|	-	0.00047	19.3	0.0	0.00075	18.7	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
AdoHcyase_NAD	PF00670.16	gi|385802732|ref|YP_005839132.1|	-	0.00096	19.0	0.3	0.0017	18.1	0.2	1.4	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
IlvN	PF07991.7	gi|385802732|ref|YP_005839132.1|	-	0.0019	17.6	0.1	0.003	16.9	0.1	1.4	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
NAD_binding_7	PF13241.1	gi|385802732|ref|YP_005839132.1|	-	0.002	18.3	0.1	0.003	17.7	0.0	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
NAD_binding_10	PF13460.1	gi|385802732|ref|YP_005839132.1|	-	0.0028	17.6	0.2	0.0033	17.4	0.1	1.2	1	0	0	1	1	1	1	NADH(P)-binding
Saccharop_dh	PF03435.13	gi|385802732|ref|YP_005839132.1|	-	0.0038	16.2	0.1	0.0046	15.9	0.1	1.1	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
AlaDh_PNT_C	PF01262.16	gi|385802732|ref|YP_005839132.1|	-	0.0047	16.4	0.1	0.0073	15.8	0.1	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
FAD_binding_3	PF01494.14	gi|385802732|ref|YP_005839132.1|	-	0.0059	15.6	0.0	0.0074	15.3	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_2	PF03446.10	gi|385802732|ref|YP_005839132.1|	-	0.0081	16.0	0.1	0.018	14.9	0.0	1.6	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
ApbA	PF02558.11	gi|385802732|ref|YP_005839132.1|	-	0.092	12.1	0.0	0.14	11.6	0.0	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Gmad2	PF10648.4	gi|385802733|ref|YP_005839133.1|	-	0.00047	20.2	0.3	0.00092	19.3	0.2	1.5	1	0	0	1	1	1	1	Immunoglobulin-like	domain	of	bacterial	spore	germination
DUF2201	PF09967.4	gi|385802733|ref|YP_005839133.1|	-	0.0038	17.2	0.5	0.0038	17.2	0.3	1.6	2	0	0	2	2	2	1	VWA-like	domain	(DUF2201)
DUF2077	PF09850.4	gi|385802733|ref|YP_005839133.1|	-	0.066	12.6	0.0	0.99	8.7	0.0	2.2	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2077)
ALS_ss_C	PF10369.4	gi|385802733|ref|YP_005839133.1|	-	0.15	11.8	1.1	5.1	6.8	0.2	2.4	2	0	0	2	2	2	0	Small	subunit	of	acetolactate	synthase
TALPID3	PF15324.1	gi|385802733|ref|YP_005839133.1|	-	4	4.6	11.3	5.2	4.2	7.9	1.1	1	0	0	1	1	1	0	Hedgehog	signalling	target
ABC2_membrane_5	PF13346.1	gi|385802734|ref|YP_005839134.1|	-	0.14	11.4	8.1	0.14	11.4	5.6	1.0	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
DUF2721	PF11026.3	gi|385802734|ref|YP_005839134.1|	-	0.17	11.5	5.0	0.19	11.3	3.4	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2721)
Halogen_Hydrol	PF10112.4	gi|385802734|ref|YP_005839134.1|	-	0.29	10.5	4.0	0.32	10.3	2.8	1.1	1	0	0	1	1	1	0	5-bromo-4-chloroindolyl	phosphate	hydrolysis	protein
IncA	PF04156.9	gi|385802734|ref|YP_005839134.1|	-	4.3	6.8	8.3	4.9	6.6	5.8	1.0	1	0	0	1	1	1	0	IncA	protein
PALP	PF00291.20	gi|385802735|ref|YP_005839135.1|	-	2.3e-78	263.5	9.3	2.8e-78	263.2	6.5	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ACT_4	PF13291.1	gi|385802735|ref|YP_005839135.1|	-	3.1e-05	24.2	0.2	0.00046	20.4	0.0	2.6	2	0	0	2	2	2	1	ACT	domain
ACT	PF01842.20	gi|385802735|ref|YP_005839135.1|	-	0.0008	18.8	0.1	0.0008	18.8	0.1	2.6	3	0	0	3	3	3	1	ACT	domain
Citrate_synt	PF00285.16	gi|385802736|ref|YP_005839136.1|	-	1.2e-128	428.7	0.1	1.4e-128	428.6	0.0	1.0	1	0	0	1	1	1	1	Citrate	synthase
SpoIIE	PF07228.7	gi|385802736|ref|YP_005839136.1|	-	0.0098	15.6	0.9	0.02	14.6	0.0	1.9	2	1	0	2	2	2	1	Stage	II	sporulation	protein	E	(SpoIIE)
TrkA_C	PF02080.16	gi|385802737|ref|YP_005839137.1|	-	2e-31	107.4	0.3	2.4e-17	62.2	0.0	2.6	2	0	0	2	2	2	2	TrkA-C	domain
PhoU	PF01895.14	gi|385802737|ref|YP_005839137.1|	-	7.9e-13	48.6	6.6	2.4e-06	27.9	1.7	2.5	2	0	0	2	2	2	2	PhoU	domain
bZIP_2	PF07716.10	gi|385802737|ref|YP_005839137.1|	-	0.095	12.5	0.4	5.6	6.8	0.0	2.4	2	0	0	2	2	2	0	Basic	region	leucine	zipper
Dicistro_VP4	PF11492.3	gi|385802737|ref|YP_005839137.1|	-	0.34	10.9	3.1	0.74	9.8	0.2	2.4	2	0	0	2	2	2	0	Cricket	paralysis	virus,	VP4
YrvL	PF14184.1	gi|385802738|ref|YP_005839138.1|	-	0.068	12.9	2.2	0.098	12.4	1.5	1.2	1	0	0	1	1	1	0	Regulatory	protein	YrvL
Cation_ATPase_C	PF00689.16	gi|385802738|ref|YP_005839138.1|	-	0.073	12.5	1.8	0.089	12.3	1.3	1.2	1	0	0	1	1	1	0	Cation	transporting	ATPase,	C-terminus
Claudin_3	PF06653.6	gi|385802738|ref|YP_005839138.1|	-	0.64	9.7	3.8	1.4	8.6	2.6	1.5	1	1	0	1	1	1	0	Tight	junction	protein,	Claudin-like
AstE_AspA	PF04952.9	gi|385802739|ref|YP_005839139.1|	-	4.9e-51	173.3	0.0	5.6e-51	173.1	0.0	1.0	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
TMP_2	PF06791.8	gi|385802739|ref|YP_005839139.1|	-	0.042	13.4	0.0	0.062	12.9	0.0	1.2	1	0	0	1	1	1	0	Prophage	tail	length	tape	measure	protein
PCMT	PF01135.14	gi|385802741|ref|YP_005839141.1|	-	7e-31	107.3	0.3	1.6e-25	89.9	0.1	2.1	2	0	0	2	2	2	2	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MTS	PF05175.9	gi|385802741|ref|YP_005839141.1|	-	3.4e-07	29.7	0.1	6.1e-07	28.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_18	PF12847.2	gi|385802741|ref|YP_005839141.1|	-	4.9e-07	30.3	0.0	8.1e-07	29.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|385802741|ref|YP_005839141.1|	-	3.6e-06	26.6	0.0	4.9e-06	26.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|385802741|ref|YP_005839141.1|	-	1.1e-05	25.4	0.1	1.7e-05	24.8	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Met_10	PF02475.11	gi|385802741|ref|YP_005839141.1|	-	0.0012	18.4	0.0	0.0017	17.9	0.0	1.2	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_11	PF08241.7	gi|385802741|ref|YP_005839141.1|	-	0.0018	18.7	0.0	0.0035	17.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|385802741|ref|YP_005839141.1|	-	0.0018	18.6	0.0	0.0043	17.4	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_32	PF13679.1	gi|385802741|ref|YP_005839141.1|	-	0.004	16.8	0.1	0.0068	16.0	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.8	gi|385802741|ref|YP_005839141.1|	-	0.048	12.7	0.2	0.079	12.0	0.2	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
DUF3897	PF13036.1	gi|385802741|ref|YP_005839141.1|	-	0.11	12.1	0.1	0.16	11.5	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3897)
VARLMGL	PF14383.1	gi|385802741|ref|YP_005839141.1|	-	0.11	11.6	0.0	0.22	10.7	0.0	1.5	1	0	0	1	1	1	0	DUF761-associated	sequence	motif
RrnaAD	PF00398.15	gi|385802741|ref|YP_005839141.1|	-	0.14	11.1	0.0	0.2	10.6	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
UPF0020	PF01170.13	gi|385802741|ref|YP_005839141.1|	-	0.15	11.6	0.0	0.23	10.9	0.0	1.4	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
DUF2387	PF09526.5	gi|385802742|ref|YP_005839142.1|	-	0.00031	20.6	0.6	0.00058	19.7	0.4	1.4	1	0	0	1	1	1	1	Probable	metal-binding	protein	(DUF2387)
Lar_restr_allev	PF14354.1	gi|385802742|ref|YP_005839142.1|	-	0.11	12.8	0.7	0.25	11.6	0.5	1.6	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
zinc_ribbon_5	PF13719.1	gi|385802742|ref|YP_005839142.1|	-	0.15	11.6	6.5	0.64	9.6	4.1	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|385802742|ref|YP_005839142.1|	-	0.35	10.5	6.8	2.4	7.9	4.3	2.3	1	1	1	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|385802742|ref|YP_005839142.1|	-	0.65	9.2	3.9	0.79	9.0	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Peptidase_M29	PF02073.10	gi|385802743|ref|YP_005839143.1|	-	3e-19	69.0	0.3	1.2e-16	60.5	0.0	2.3	2	1	0	2	2	2	2	Thermophilic	metalloprotease	(M29)
FAM24	PF15193.1	gi|385802743|ref|YP_005839143.1|	-	0.059	13.5	0.6	0.11	12.6	0.1	1.8	2	0	0	2	2	2	0	FAM24	family
Gp_dh_C	PF02800.15	gi|385802744|ref|YP_005839144.1|	-	1.8e-18	66.4	0.0	2.9e-18	65.8	0.0	1.3	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
Gp_dh_N	PF00044.19	gi|385802744|ref|YP_005839144.1|	-	6.7e-17	61.8	0.5	1.6e-15	57.3	0.4	2.4	1	1	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
DapB_N	PF01113.15	gi|385802744|ref|YP_005839144.1|	-	5.9e-10	39.1	0.4	2.8e-09	36.9	0.1	2.2	1	1	1	2	2	2	1	Dihydrodipicolinate	reductase,	N-terminus
NAD_binding_3	PF03447.11	gi|385802744|ref|YP_005839144.1|	-	0.00049	20.4	0.1	0.0013	19.1	0.0	1.7	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|385802744|ref|YP_005839144.1|	-	0.0025	16.9	0.3	0.0092	15.1	0.0	2.1	2	1	1	3	3	3	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
GFO_IDH_MocA	PF01408.17	gi|385802744|ref|YP_005839144.1|	-	0.0061	17.0	0.6	0.015	15.8	0.0	1.9	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Metallophos_2	PF12850.2	gi|385802745|ref|YP_005839145.1|	-	4.3e-15	55.8	0.2	5e-15	55.6	0.1	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|385802745|ref|YP_005839145.1|	-	8.7e-07	28.5	0.3	2.4e-06	27.0	0.2	1.8	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
OATP	PF03137.15	gi|385802746|ref|YP_005839146.1|	-	0.021	12.8	0.0	0.021	12.8	0.0	1.0	1	0	0	1	1	1	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
DUF4418	PF14387.1	gi|385802746|ref|YP_005839146.1|	-	0.16	11.6	1.7	0.21	11.3	1.2	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4418)
Peptidase_M24	PF00557.19	gi|385802747|ref|YP_005839147.1|	-	3.8e-16	59.2	2.4	6.9e-16	58.4	0.3	2.3	2	1	1	3	3	3	1	Metallopeptidase	family	M24
DZR	PF12773.2	gi|385802749|ref|YP_005839149.1|	-	0.0023	17.6	0.3	0.0024	17.6	0.2	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|385802749|ref|YP_005839149.1|	-	0.0054	16.1	0.5	0.0094	15.4	0.4	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|385802749|ref|YP_005839149.1|	-	0.0081	15.3	2.1	0.0081	15.3	1.4	1.5	2	0	0	2	2	2	1	zinc-ribbon	domain
zf-IS66	PF13005.2	gi|385802749|ref|YP_005839149.1|	-	0.042	13.8	0.8	0.065	13.2	0.6	1.3	1	0	0	1	1	1	0	zinc-finger	binding	domain	of	transposase	IS66
Rubredoxin	PF00301.15	gi|385802749|ref|YP_005839149.1|	-	0.05	13.4	0.7	2.4	8.1	0.0	2.2	2	0	0	2	2	2	0	Rubredoxin
UPF0547	PF10571.4	gi|385802749|ref|YP_005839149.1|	-	0.056	13.1	1.7	0.11	12.2	1.2	1.5	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
RecR	PF02132.10	gi|385802749|ref|YP_005839149.1|	-	0.069	12.6	0.8	0.1	12.0	0.6	1.2	1	0	0	1	1	1	0	RecR	protein
OrfB_Zn_ribbon	PF07282.6	gi|385802749|ref|YP_005839149.1|	-	0.15	11.7	2.2	0.28	10.8	1.5	1.5	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Cys_rich_CPCC	PF14206.1	gi|385802749|ref|YP_005839149.1|	-	0.15	11.6	2.1	0.25	10.9	1.5	1.4	1	0	0	1	1	1	0	Cysteine-rich	CPCC
zf-NADH-PPase	PF09297.6	gi|385802749|ref|YP_005839149.1|	-	0.18	11.3	0.4	0.18	11.3	0.3	2.2	2	1	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
A2L_zn_ribbon	PF08792.5	gi|385802749|ref|YP_005839149.1|	-	1.1	8.7	3.9	2.6	7.5	0.1	2.4	1	1	1	2	2	2	0	A2L	zinc	ribbon	domain
Trypan_PARP	PF05887.6	gi|385802750|ref|YP_005839150.1|	-	0.012	15.4	0.1	0.017	14.9	0.1	1.3	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
Peptidase_M32	PF02074.10	gi|385802751|ref|YP_005839151.1|	-	2.5e-150	501.3	0.1	2.9e-150	501.1	0.0	1.0	1	0	0	1	1	1	1	Carboxypeptidase	Taq	(M32)	metallopeptidase
DUF3291	PF11695.3	gi|385802751|ref|YP_005839151.1|	-	0.067	12.6	0.0	0.13	11.6	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3291)
Peptidase_M20	PF01546.23	gi|385802752|ref|YP_005839152.1|	-	6.5e-27	94.2	0.8	8.9e-27	93.8	0.6	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|385802752|ref|YP_005839152.1|	-	4.2e-15	55.4	0.2	9.9e-15	54.2	0.1	1.6	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
DUF1108	PF06531.6	gi|385802752|ref|YP_005839152.1|	-	0.096	12.8	0.0	0.25	11.5	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1108)
T2SE	PF00437.15	gi|385802753|ref|YP_005839153.1|	-	1.7e-13	50.1	0.0	3.5e-13	49.0	0.0	1.5	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
KH_1	PF00013.24	gi|385802753|ref|YP_005839153.1|	-	1.6e-06	27.6	0.5	6.4e-06	25.7	0.0	2.4	2	0	0	2	2	2	1	KH	domain
AAA_17	PF13207.1	gi|385802753|ref|YP_005839153.1|	-	0.00013	22.7	0.0	0.00051	20.8	0.0	2.1	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|385802753|ref|YP_005839153.1|	-	0.00081	18.8	0.0	0.0022	17.4	0.0	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.1	gi|385802753|ref|YP_005839153.1|	-	0.0011	18.6	0.3	0.0091	15.5	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_33	PF13671.1	gi|385802753|ref|YP_005839153.1|	-	0.0012	18.7	0.0	0.0055	16.5	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
KH_2	PF07650.12	gi|385802753|ref|YP_005839153.1|	-	0.0012	18.3	1.3	0.0031	17.0	0.9	1.7	1	0	0	1	1	1	1	KH	domain
Zeta_toxin	PF06414.7	gi|385802753|ref|YP_005839153.1|	-	0.0018	17.4	0.0	0.0035	16.4	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
NTPase_1	PF03266.10	gi|385802753|ref|YP_005839153.1|	-	0.0022	17.7	0.0	0.0055	16.4	0.0	1.7	1	0	0	1	1	1	1	NTPase
AAA_19	PF13245.1	gi|385802753|ref|YP_005839153.1|	-	0.0023	17.6	0.0	0.0056	16.3	0.0	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_16	PF13191.1	gi|385802753|ref|YP_005839153.1|	-	0.0039	17.1	0.0	0.0088	16.0	0.0	1.6	1	0	0	1	1	1	1	AAA	ATPase	domain
Thymidylate_kin	PF02223.12	gi|385802753|ref|YP_005839153.1|	-	0.0043	16.4	0.0	0.014	14.8	0.0	1.7	1	1	1	2	2	2	1	Thymidylate	kinase
KH_3	PF13014.1	gi|385802753|ref|YP_005839153.1|	-	0.0073	15.9	0.2	0.025	14.2	0.2	2.0	1	0	0	1	1	1	1	KH	domain
DUF2620	PF10941.3	gi|385802753|ref|YP_005839153.1|	-	0.008	16.2	0.1	0.023	14.7	0.1	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF2620
PIN_4	PF13638.1	gi|385802753|ref|YP_005839153.1|	-	0.0095	16.0	0.1	0.035	14.1	0.1	2.0	1	1	0	1	1	1	1	PIN	domain
AAA_18	PF13238.1	gi|385802753|ref|YP_005839153.1|	-	0.011	15.9	0.0	0.027	14.7	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
KTI12	PF08433.5	gi|385802753|ref|YP_005839153.1|	-	0.012	14.8	0.0	0.026	13.7	0.0	1.5	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA_22	PF13401.1	gi|385802753|ref|YP_005839153.1|	-	0.013	15.6	0.0	0.037	14.1	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|385802753|ref|YP_005839153.1|	-	0.025	14.3	0.0	0.051	13.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.24	gi|385802753|ref|YP_005839153.1|	-	0.032	14.4	0.0	0.068	13.3	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATP_bind_1	PF03029.12	gi|385802753|ref|YP_005839153.1|	-	0.049	13.1	0.0	0.084	12.4	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
Sigma54_activ_2	PF14532.1	gi|385802753|ref|YP_005839153.1|	-	0.052	13.6	0.0	0.14	12.1	0.0	1.7	2	0	0	2	2	1	0	Sigma-54	interaction	domain
AAA_14	PF13173.1	gi|385802753|ref|YP_005839153.1|	-	0.068	13.0	0.0	0.14	12.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.16	gi|385802753|ref|YP_005839153.1|	-	0.099	11.7	0.0	0.18	10.9	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
NACHT	PF05729.7	gi|385802753|ref|YP_005839153.1|	-	0.1	12.2	0.0	0.19	11.4	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
IstB_IS21	PF01695.12	gi|385802753|ref|YP_005839153.1|	-	0.13	11.6	0.0	0.22	10.9	0.0	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
RNA_helicase	PF00910.17	gi|385802753|ref|YP_005839153.1|	-	0.14	12.2	0.0	0.32	11.2	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
TrmB	PF01978.14	gi|385802754|ref|YP_005839154.1|	-	0.012	15.2	0.1	0.018	14.7	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF2540	PF10802.3	gi|385802754|ref|YP_005839154.1|	-	0.02	14.5	0.1	0.03	13.9	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2540)
HTH_27	PF13463.1	gi|385802754|ref|YP_005839154.1|	-	0.022	15.0	0.0	0.033	14.5	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
MarR	PF01047.17	gi|385802754|ref|YP_005839154.1|	-	0.031	13.9	0.0	0.048	13.3	0.0	1.2	1	0	0	1	1	1	0	MarR	family
TFIIE_alpha	PF02002.12	gi|385802754|ref|YP_005839154.1|	-	0.072	12.5	0.0	0.097	12.1	0.0	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
GntR	PF00392.16	gi|385802754|ref|YP_005839154.1|	-	0.081	12.3	0.0	0.12	11.8	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
AF-4	PF05110.8	gi|385802754|ref|YP_005839154.1|	-	0.096	10.5	3.4	0.097	10.5	2.3	1.0	1	0	0	1	1	1	0	AF-4	proto-oncoprotein
DUF1634	PF07843.6	gi|385802755|ref|YP_005839155.1|	-	0.00012	21.6	3.4	0.00016	21.2	2.3	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1634)
ATP-synt_C	PF00137.16	gi|385802755|ref|YP_005839155.1|	-	0.12	12.3	5.3	0.21	11.5	3.7	1.4	1	0	0	1	1	1	0	ATP	synthase	subunit	C
ABC_tran	PF00005.22	gi|385802756|ref|YP_005839156.1|	-	9e-37	126.4	0.0	9.3e-17	61.6	0.1	3.0	2	1	0	2	2	2	2	ABC	transporter
SMC_N	PF02463.14	gi|385802756|ref|YP_005839156.1|	-	5.8e-15	55.1	2.1	0.00013	21.2	0.0	4.2	3	1	0	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.1	gi|385802756|ref|YP_005839156.1|	-	8.2e-15	55.5	0.5	0.0055	16.7	0.0	4.3	2	2	1	4	4	4	3	AAA	domain
RLI	PF04068.10	gi|385802756|ref|YP_005839156.1|	-	1.7e-12	46.6	1.1	3.3e-12	45.7	0.8	1.5	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
AAA_17	PF13207.1	gi|385802756|ref|YP_005839156.1|	-	6e-08	33.5	0.1	0.019	15.7	0.0	3.0	2	2	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|385802756|ref|YP_005839156.1|	-	2.8e-07	30.6	1.7	0.016	15.1	0.1	2.8	2	2	0	2	2	2	2	AAA	ATPase	domain
AAA_22	PF13401.1	gi|385802756|ref|YP_005839156.1|	-	3.7e-07	30.3	0.4	0.0058	16.7	0.0	3.1	3	1	0	3	3	2	2	AAA	domain
AAA_23	PF13476.1	gi|385802756|ref|YP_005839156.1|	-	3.7e-07	30.6	0.0	0.021	15.1	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA	PF00004.24	gi|385802756|ref|YP_005839156.1|	-	7.3e-06	26.2	0.0	0.032	14.4	0.0	2.6	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.1	gi|385802756|ref|YP_005839156.1|	-	2e-05	24.0	0.7	0.033	13.6	0.0	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
RNA_helicase	PF00910.17	gi|385802756|ref|YP_005839156.1|	-	2.1e-05	24.6	0.0	0.2	11.8	0.0	2.5	2	0	0	2	2	2	2	RNA	helicase
AAA_25	PF13481.1	gi|385802756|ref|YP_005839156.1|	-	2.5e-05	23.7	4.5	0.13	11.6	0.0	3.7	4	0	0	4	4	4	2	AAA	domain
AAA_14	PF13173.1	gi|385802756|ref|YP_005839156.1|	-	7.3e-05	22.6	0.0	0.33	10.8	0.0	3.5	3	1	0	3	3	3	1	AAA	domain
NACHT	PF05729.7	gi|385802756|ref|YP_005839156.1|	-	9.2e-05	22.1	0.0	0.2	11.3	0.0	2.5	2	0	0	2	2	2	2	NACHT	domain
AAA_18	PF13238.1	gi|385802756|ref|YP_005839156.1|	-	0.00015	22.0	0.0	0.37	11.0	0.0	2.8	2	1	0	2	2	2	1	AAA	domain
Fer4	PF00037.22	gi|385802756|ref|YP_005839156.1|	-	0.00025	20.4	1.3	0.00025	20.4	0.9	3.0	3	0	0	3	3	3	1	4Fe-4S	binding	domain
AAA_33	PF13671.1	gi|385802756|ref|YP_005839156.1|	-	0.00084	19.2	0.1	1.6	8.6	0.0	3.0	2	0	0	2	2	2	1	AAA	domain
DUF258	PF03193.11	gi|385802756|ref|YP_005839156.1|	-	0.00097	18.3	0.0	0.91	8.6	0.0	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function,	DUF258
AAA_24	PF13479.1	gi|385802756|ref|YP_005839156.1|	-	0.0013	18.3	0.1	1.2	8.6	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
MobB	PF03205.9	gi|385802756|ref|YP_005839156.1|	-	0.0017	18.0	0.9	1.6	8.4	0.0	3.0	3	0	0	3	3	3	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_10	PF12846.2	gi|385802756|ref|YP_005839156.1|	-	0.0034	16.8	0.3	2.3	7.5	0.0	3.3	3	0	0	3	3	3	1	AAA-like	domain
SbcCD_C	PF13558.1	gi|385802756|ref|YP_005839156.1|	-	0.0039	17.0	0.1	1	9.3	0.0	2.9	2	1	0	2	2	2	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_5	PF07728.9	gi|385802756|ref|YP_005839156.1|	-	0.0053	16.4	0.0	1.4	8.6	0.0	2.6	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
Fer4_6	PF12837.2	gi|385802756|ref|YP_005839156.1|	-	0.0061	16.3	14.7	0.016	15.0	1.2	2.4	2	0	0	2	2	2	1	4Fe-4S	binding	domain
AAA_13	PF13166.1	gi|385802756|ref|YP_005839156.1|	-	0.0067	14.9	0.0	0.54	8.6	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_15	PF13175.1	gi|385802756|ref|YP_005839156.1|	-	0.0075	15.3	0.0	0.14	11.2	0.0	2.5	2	1	1	3	3	3	1	AAA	ATPase	domain
NTPase_1	PF03266.10	gi|385802756|ref|YP_005839156.1|	-	0.0089	15.7	1.5	3.1	7.4	0.1	2.8	3	0	0	3	3	2	0	NTPase
AAA_28	PF13521.1	gi|385802756|ref|YP_005839156.1|	-	0.011	15.7	2.7	0.17	11.8	0.0	3.1	3	0	0	3	3	2	0	AAA	domain
Rad17	PF03215.10	gi|385802756|ref|YP_005839156.1|	-	0.011	14.4	0.1	0.21	10.2	0.0	2.5	2	1	1	3	3	3	0	Rad17	cell	cycle	checkpoint	protein
NB-ARC	PF00931.17	gi|385802756|ref|YP_005839156.1|	-	0.015	14.1	1.5	0.3	9.8	0.1	2.3	2	0	0	2	2	2	0	NB-ARC	domain
Arch_ATPase	PF01637.13	gi|385802756|ref|YP_005839156.1|	-	0.026	14.2	0.0	5	6.7	0.0	2.3	2	0	0	2	2	2	0	Archaeal	ATPase
MMR_HSR1	PF01926.18	gi|385802756|ref|YP_005839156.1|	-	0.033	14.1	0.0	5.1	7.0	0.0	2.8	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
Miro	PF08477.8	gi|385802756|ref|YP_005839156.1|	-	0.041	14.3	0.0	8.4	6.9	0.0	2.5	2	0	0	2	2	2	0	Miro-like	protein
SRP54	PF00448.17	gi|385802756|ref|YP_005839156.1|	-	0.054	12.9	1.4	2.1	7.7	0.1	2.6	3	0	0	3	3	2	0	SRP54-type	protein,	GTPase	domain
AAA_30	PF13604.1	gi|385802756|ref|YP_005839156.1|	-	0.055	13.0	0.1	9.5	5.7	0.0	2.7	2	0	0	2	2	2	0	AAA	domain
Mg_chelatase	PF01078.16	gi|385802756|ref|YP_005839156.1|	-	0.073	12.2	0.0	12	5.0	0.0	2.3	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
ArgK	PF03308.11	gi|385802756|ref|YP_005839156.1|	-	0.076	11.7	1.1	3.4	6.3	0.0	2.2	2	0	0	2	2	2	0	ArgK	protein
Fer4_9	PF13187.1	gi|385802756|ref|YP_005839156.1|	-	0.12	12.6	11.2	0.22	11.8	7.8	1.5	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
UPF0079	PF02367.12	gi|385802756|ref|YP_005839156.1|	-	0.13	11.8	0.0	12	5.5	0.0	2.5	2	0	0	2	2	2	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_19	PF13245.1	gi|385802756|ref|YP_005839156.1|	-	0.14	11.9	4.9	4.1	7.2	0.2	3.4	3	0	0	3	3	3	0	Part	of	AAA	domain
IstB_IS21	PF01695.12	gi|385802756|ref|YP_005839156.1|	-	0.17	11.2	0.3	13	5.1	0.0	2.4	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
Fer4_2	PF12797.2	gi|385802756|ref|YP_005839156.1|	-	0.2	11.6	12.9	0.28	11.1	1.7	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|385802756|ref|YP_005839156.1|	-	0.22	11.9	10.9	0.63	10.4	7.6	1.8	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
DUF87	PF01935.12	gi|385802756|ref|YP_005839156.1|	-	0.31	10.8	1.4	16	5.2	0.1	3.0	3	1	0	3	3	3	0	Domain	of	unknown	function	DUF87
Fer4_10	PF13237.1	gi|385802756|ref|YP_005839156.1|	-	0.58	10.0	11.1	1.2	9.0	7.7	1.5	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|385802756|ref|YP_005839156.1|	-	1.2	9.0	7.9	2.6	7.9	5.5	1.6	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|385802756|ref|YP_005839156.1|	-	3.8	8.3	10.4	0.24	12.1	1.0	2.1	1	1	1	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_3	PF12798.2	gi|385802756|ref|YP_005839156.1|	-	9.6	7.0	13.3	0.12	12.9	2.1	2.4	2	0	0	2	2	1	0	4Fe-4S	binding	domain
Usp	PF00582.21	gi|385802757|ref|YP_005839157.1|	-	2.5e-20	73.0	5.4	6.6e-20	71.7	3.8	1.6	1	1	0	1	1	1	1	Universal	stress	protein	family
Peptidase_M54	PF07998.6	gi|385802758|ref|YP_005839158.1|	-	2.2e-22	79.8	0.0	2.8e-22	79.4	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	M54
Reprolysin_2	PF13574.1	gi|385802758|ref|YP_005839158.1|	-	1.2e-06	28.7	0.0	1.5e-06	28.3	0.0	1.1	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_4	PF13583.1	gi|385802758|ref|YP_005839158.1|	-	2.7e-06	27.0	0.0	3.2e-06	26.8	0.0	1.1	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_3	PF13582.1	gi|385802758|ref|YP_005839158.1|	-	0.00011	22.7	0.0	0.00015	22.3	0.0	1.3	1	1	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Peptidase_M10	PF00413.19	gi|385802758|ref|YP_005839158.1|	-	0.00016	21.4	0.0	0.0003	20.5	0.0	1.3	1	1	0	1	1	1	1	Matrixin
Reprolysin_5	PF13688.1	gi|385802758|ref|YP_005839158.1|	-	0.00042	20.2	0.0	0.00047	20.1	0.0	1.2	1	0	0	1	1	1	1	Metallo-peptidase	family	M12
DUF1025	PF06262.6	gi|385802758|ref|YP_005839158.1|	-	0.0019	17.9	0.0	0.006	16.3	0.0	1.8	2	0	0	2	2	2	1	Possibl	zinc	metallo-peptidase
Peptidase_M66	PF10462.4	gi|385802758|ref|YP_005839158.1|	-	0.0084	15.0	0.0	0.0094	14.8	0.0	1.2	1	0	0	1	1	1	1	Peptidase	M66
Metallopep	PF12044.3	gi|385802758|ref|YP_005839158.1|	-	0.0092	14.4	0.2	0.013	13.9	0.1	1.2	1	0	0	1	1	1	1	Putative	peptidase	family
DUF4374	PF14298.1	gi|385802758|ref|YP_005839158.1|	-	0.046	12.2	0.0	0.061	11.9	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4374)
Peptidase_M43	PF05572.8	gi|385802758|ref|YP_005839158.1|	-	0.062	12.8	0.0	0.1	12.2	0.0	1.3	1	0	0	1	1	1	0	Pregnancy-associated	plasma	protein-A
UPF0146	PF03686.8	gi|385802759|ref|YP_005839159.1|	-	1.2e-18	67.1	0.0	1.4e-18	66.9	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0146)
HAD_2	PF13419.1	gi|385802760|ref|YP_005839160.1|	-	1.4e-12	48.1	0.2	2.8e-11	43.9	0.1	2.2	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|385802760|ref|YP_005839160.1|	-	9.4e-07	28.4	1.4	1.2e-06	28.1	0.1	1.9	2	0	0	2	2	2	1	HAD-hyrolase-like
Hydrolase	PF00702.21	gi|385802760|ref|YP_005839160.1|	-	1.4e-06	28.8	0.1	0.0039	17.6	0.0	2.3	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Lactamase_B	PF00753.22	gi|385802761|ref|YP_005839161.1|	-	2e-18	66.7	2.5	3e-18	66.1	1.7	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|385802761|ref|YP_005839161.1|	-	0.00045	19.8	1.7	0.00077	19.0	1.2	1.5	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Tom22	PF04281.8	gi|385802762|ref|YP_005839162.1|	-	0.93	9.0	3.9	1.1	8.7	2.7	1.1	1	0	0	1	1	1	0	Mitochondrial	import	receptor	subunit	Tom22
TFIIA	PF03153.8	gi|385802762|ref|YP_005839162.1|	-	4.4	7.0	8.5	4.8	6.9	5.9	1.0	1	0	0	1	1	1	0	Transcription	factor	IIA,	alpha/beta	subunit
DUF99	PF01949.11	gi|385802763|ref|YP_005839163.1|	-	1.7e-62	209.8	0.0	1.9e-62	209.7	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF99
UDG	PF03167.14	gi|385802764|ref|YP_005839164.1|	-	2.5e-35	121.2	0.0	3.2e-35	120.8	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
ABC_tran	PF00005.22	gi|385802766|ref|YP_005839166.1|	-	6e-32	110.8	0.1	9.6e-32	110.1	0.1	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385802766|ref|YP_005839166.1|	-	8.9e-12	45.5	0.0	2.9e-05	24.1	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|385802766|ref|YP_005839166.1|	-	4.4e-06	26.8	0.1	6.9e-06	26.1	0.1	1.3	1	0	0	1	1	1	1	AAA	ATPase	domain
DUF258	PF03193.11	gi|385802766|ref|YP_005839166.1|	-	7.5e-05	21.9	0.1	0.00014	21.0	0.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
SMC_N	PF02463.14	gi|385802766|ref|YP_005839166.1|	-	0.00011	21.5	0.1	0.072	12.3	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|385802766|ref|YP_005839166.1|	-	0.00026	20.1	0.0	0.24	10.3	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_29	PF13555.1	gi|385802766|ref|YP_005839166.1|	-	0.00034	20.0	0.0	0.00069	19.0	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
MMR_HSR1	PF01926.18	gi|385802766|ref|YP_005839166.1|	-	0.00086	19.2	0.8	0.0052	16.7	0.5	2.0	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
SbcCD_C	PF13558.1	gi|385802766|ref|YP_005839166.1|	-	0.0012	18.6	0.3	0.027	14.3	0.2	2.6	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_13	PF13166.1	gi|385802766|ref|YP_005839166.1|	-	0.0014	17.2	0.0	0.33	9.3	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_23	PF13476.1	gi|385802766|ref|YP_005839166.1|	-	0.0018	18.6	0.3	0.0031	17.8	0.1	1.5	2	0	0	2	2	2	1	AAA	domain
AAA_18	PF13238.1	gi|385802766|ref|YP_005839166.1|	-	0.0055	17.0	0.1	0.033	14.5	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|385802766|ref|YP_005839166.1|	-	0.013	15.5	0.2	0.027	14.6	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.1	gi|385802766|ref|YP_005839166.1|	-	0.014	14.8	0.1	0.05	12.9	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.1	gi|385802766|ref|YP_005839166.1|	-	0.015	14.8	0.3	0.03	13.9	0.2	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|385802766|ref|YP_005839166.1|	-	0.019	14.4	0.6	0.035	13.5	0.4	1.7	1	1	0	1	1	1	0	AAA-like	domain
AAA_17	PF13207.1	gi|385802766|ref|YP_005839166.1|	-	0.026	15.3	0.0	0.053	14.3	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.1	gi|385802766|ref|YP_005839166.1|	-	0.028	14.3	0.3	0.065	13.1	0.2	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|385802766|ref|YP_005839166.1|	-	0.058	13.2	0.2	0.11	12.3	0.2	1.6	1	1	0	1	1	1	0	AAA	domain
MLIP	PF15274.1	gi|385802766|ref|YP_005839166.1|	-	0.095	12.1	0.4	7	6.0	0.1	2.1	2	0	0	2	2	2	0	Muscular	LMNA-interacting	protein
Miro	PF08477.8	gi|385802766|ref|YP_005839166.1|	-	0.11	12.9	0.1	0.28	11.6	0.1	1.6	1	0	0	1	1	1	0	Miro-like	protein
Arch_ATPase	PF01637.13	gi|385802766|ref|YP_005839166.1|	-	0.12	12.0	0.0	0.22	11.2	0.0	1.3	1	0	0	1	1	1	0	Archaeal	ATPase
Phosphonate-bd	PF12974.2	gi|385802767|ref|YP_005839167.1|	-	1.4e-53	181.7	0.7	1.7e-53	181.5	0.5	1.1	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
SBP_bac_3	PF00497.15	gi|385802767|ref|YP_005839167.1|	-	0.0022	17.2	0.0	0.0035	16.6	0.0	1.4	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	3
TAT_signal	PF10518.4	gi|385802767|ref|YP_005839167.1|	-	0.018	14.9	1.3	0.018	14.9	0.9	2.3	3	0	0	3	3	3	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF4223	PF13978.1	gi|385802767|ref|YP_005839167.1|	-	0.034	13.8	0.6	0.44	10.3	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4223)
GATase	PF00117.23	gi|385802768|ref|YP_005839168.1|	-	8.2e-34	116.7	0.0	1.1e-33	116.3	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.9	gi|385802768|ref|YP_005839168.1|	-	2.1e-08	33.8	0.1	5e-08	32.6	0.0	1.7	1	1	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
SNO	PF01174.14	gi|385802768|ref|YP_005839168.1|	-	3.5e-08	33.2	0.0	1e-07	31.7	0.0	1.7	1	1	0	1	1	1	1	SNO	glutamine	amidotransferase	family
Peptidase_C26	PF07722.8	gi|385802768|ref|YP_005839168.1|	-	4.1e-07	29.6	0.1	1.7e-06	27.6	0.1	2.0	1	1	0	1	1	1	1	Peptidase	C26
DJ-1_PfpI	PF01965.19	gi|385802768|ref|YP_005839168.1|	-	0.0019	17.6	0.0	0.0058	16.0	0.0	1.7	2	0	0	2	2	2	1	DJ-1/PfpI	family
GATase_5	PF13507.1	gi|385802768|ref|YP_005839168.1|	-	0.028	13.3	0.0	0.36	9.6	0.0	2.5	2	1	0	2	2	2	0	CobB/CobQ-like	glutamine	amidotransferase	domain
PDT	PF00800.13	gi|385802769|ref|YP_005839169.1|	-	9.1e-45	152.4	0.2	1.2e-44	152.0	0.2	1.1	1	0	0	1	1	1	1	Prephenate	dehydratase
ACT	PF01842.20	gi|385802769|ref|YP_005839169.1|	-	3.2e-07	29.7	0.0	1.2e-06	27.8	0.0	2.0	2	0	0	2	2	2	1	ACT	domain
DUF59	PF01883.14	gi|385802771|ref|YP_005839171.1|	-	2.2e-12	46.7	0.0	4.7e-12	45.7	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF59
Amidohydro_2	PF04909.9	gi|385802772|ref|YP_005839172.1|	-	3.3e-34	118.7	1.2	4.2e-34	118.3	0.8	1.1	1	0	0	1	1	1	1	Amidohydrolase
OCD_Mu_crystall	PF02423.10	gi|385802774|ref|YP_005839174.1|	-	5.9e-89	297.9	1.3	6.9e-89	297.7	0.9	1.0	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
Shikimate_DH	PF01488.15	gi|385802774|ref|YP_005839174.1|	-	2.5e-05	24.3	0.0	4.1e-05	23.6	0.0	1.3	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
GFO_IDH_MocA	PF01408.17	gi|385802774|ref|YP_005839174.1|	-	0.057	13.9	0.1	0.13	12.7	0.1	1.6	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Cpn60_TCP1	PF00118.19	gi|385802775|ref|YP_005839175.1|	-	2.2e-151	504.8	8.5	2.5e-151	504.6	5.9	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
CSD	PF00313.17	gi|385802776|ref|YP_005839176.1|	-	2e-20	72.3	0.2	2.2e-20	72.1	0.1	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
OB_RNB	PF08206.6	gi|385802776|ref|YP_005839176.1|	-	0.028	13.9	2.0	0.04	13.4	1.4	1.3	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
S1-like	PF14444.1	gi|385802776|ref|YP_005839176.1|	-	0.037	13.7	0.2	0.041	13.6	0.1	1.3	1	1	0	1	1	1	0	S1-like
VanZ	PF04892.7	gi|385802777|ref|YP_005839177.1|	-	2.9e-09	36.9	1.9	4.1e-09	36.4	1.3	1.3	1	1	0	1	1	1	1	VanZ	like	family
Nramp	PF01566.13	gi|385802777|ref|YP_005839177.1|	-	0.024	13.4	3.2	0.028	13.2	2.2	1.2	1	0	0	1	1	1	0	Natural	resistance-associated	macrophage	protein
TctB	PF07331.6	gi|385802777|ref|YP_005839177.1|	-	0.36	10.4	6.2	0.87	9.2	4.4	1.6	1	1	0	1	1	1	0	Tripartite	tricarboxylate	transporter	TctB	family
DUF91	PF01939.11	gi|385802778|ref|YP_005839178.1|	-	1.6e-64	217.1	0.0	1.8e-64	217.0	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF91
PDDEXK_4	PF14281.1	gi|385802778|ref|YP_005839178.1|	-	0.011	15.5	0.0	0.016	15.1	0.0	1.3	1	0	0	1	1	1	0	PD-(D/E)XK	nuclease	superfamily
Ribosomal_L16	PF00252.13	gi|385802779|ref|YP_005839179.1|	-	1.1e-28	99.6	0.0	1.2e-28	99.4	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L16p/L10e
RimK	PF08443.6	gi|385802780|ref|YP_005839180.1|	-	2.8e-30	105.2	0.0	3.6e-30	104.8	0.0	1.1	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|385802780|ref|YP_005839180.1|	-	3.9e-18	65.8	0.0	5.5e-18	65.3	0.0	1.1	1	0	0	1	1	1	1	ATP-grasp	domain
GSH-S_ATP	PF02955.11	gi|385802780|ref|YP_005839180.1|	-	2.3e-09	36.6	0.0	3.4e-09	36.0	0.0	1.2	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|385802780|ref|YP_005839180.1|	-	3.1e-08	33.6	0.0	6.6e-08	32.5	0.0	1.5	1	1	0	1	1	1	1	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.8	gi|385802780|ref|YP_005839180.1|	-	3.3e-08	33.1	0.0	5.5e-08	32.4	0.0	1.3	1	1	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
ATPgrasp_Ter	PF15632.1	gi|385802780|ref|YP_005839180.1|	-	1.2e-07	30.7	0.0	2.4e-07	29.7	0.0	1.3	1	1	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
CPSase_L_D2	PF02786.12	gi|385802780|ref|YP_005839180.1|	-	0.0015	17.8	0.0	0.0022	17.3	0.0	1.3	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATPgrasp_ST	PF14397.1	gi|385802780|ref|YP_005839180.1|	-	0.0022	17.1	0.0	0.97	8.4	0.0	2.2	2	0	0	2	2	2	2	Sugar-transfer	associated	ATP-grasp
TTL	PF03133.10	gi|385802780|ref|YP_005839180.1|	-	0.0031	16.4	0.0	1.5	7.6	0.0	2.3	2	0	0	2	2	2	2	Tubulin-tyrosine	ligase	family
ATP-grasp_5	PF13549.1	gi|385802780|ref|YP_005839180.1|	-	0.066	12.4	0.0	0.12	11.6	0.0	1.3	1	0	0	1	1	1	0	ATP-grasp	domain
HSP20	PF00011.16	gi|385802781|ref|YP_005839181.1|	-	5e-08	32.7	0.0	1.4e-06	28.0	0.0	2.1	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
GvpH	PF05455.6	gi|385802781|ref|YP_005839181.1|	-	4.6e-06	26.3	0.3	5.5e-06	26.1	0.2	1.2	1	0	0	1	1	1	1	GvpH
Gp_dh_C	PF02800.15	gi|385802782|ref|YP_005839182.1|	-	1.1e-57	193.8	0.0	1.5e-57	193.4	0.0	1.2	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
Gp_dh_N	PF00044.19	gi|385802782|ref|YP_005839182.1|	-	5.2e-49	166.0	0.0	7.4e-49	165.5	0.0	1.2	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
DapB_N	PF01113.15	gi|385802782|ref|YP_005839182.1|	-	0.00092	19.1	0.1	0.0022	17.9	0.0	1.7	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
NAD_binding_3	PF03447.11	gi|385802782|ref|YP_005839182.1|	-	0.015	15.7	0.0	0.044	14.1	0.0	1.8	1	1	0	1	1	1	0	Homoserine	dehydrogenase,	NAD	binding	domain
PGK	PF00162.14	gi|385802783|ref|YP_005839183.1|	-	1.7e-108	362.6	0.9	2e-108	362.4	0.6	1.0	1	0	0	1	1	1	1	Phosphoglycerate	kinase
Lum_binding	PF00677.12	gi|385802784|ref|YP_005839184.1|	-	3.4e-35	119.7	0.5	4.8e-19	68.0	0.0	2.1	2	0	0	2	2	2	2	Lumazine	binding	domain
PrsW-protease	PF13367.1	gi|385802785|ref|YP_005839185.1|	-	2.9e-44	150.5	12.8	2.9e-44	150.5	8.9	1.7	2	0	0	2	2	2	1	Protease	prsW	family
DUF402	PF04167.8	gi|385802786|ref|YP_005839186.1|	-	2.6e-22	78.4	0.3	5.5e-22	77.3	0.2	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF402)
4HBT	PF03061.17	gi|385802787|ref|YP_005839187.1|	-	3.9e-17	62.1	0.0	5.6e-17	61.6	0.0	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
4HBT_2	PF13279.1	gi|385802787|ref|YP_005839187.1|	-	0.096	13.1	0.0	0.12	12.8	0.0	1.1	1	0	0	1	1	1	0	Thioesterase-like	superfamily
Gly-zipper_OmpA	PF13436.1	gi|385802789|ref|YP_005839189.1|	-	4.1e-05	23.2	2.2	4.9e-05	22.9	1.5	1.1	1	0	0	1	1	1	1	Glycine-zipper	containing	OmpA-like	membrane	domain
Rick_17kDa_Anti	PF05433.10	gi|385802789|ref|YP_005839189.1|	-	0.002	17.7	5.9	0.26	10.9	0.3	2.2	2	0	0	2	2	2	2	Glycine	zipper	2TM	domain
TraT	PF05818.7	gi|385802789|ref|YP_005839189.1|	-	0.01	15.2	0.8	0.013	14.9	0.6	1.1	1	0	0	1	1	1	0	Enterobacterial	TraT	complement	resistance	protein
DUF1183	PF06682.7	gi|385802789|ref|YP_005839189.1|	-	0.021	14.4	0.1	0.024	14.2	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1183)
Gly-zipper_Omp	PF13488.1	gi|385802789|ref|YP_005839189.1|	-	0.043	13.4	11.0	0.095	12.3	7.6	1.6	1	1	0	1	1	1	0	Glycine	zipper
DUF3482	PF11981.3	gi|385802789|ref|YP_005839189.1|	-	0.082	12.1	2.4	0.095	11.9	1.7	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3482)
Gly-zipper_YMGG	PF13441.1	gi|385802789|ref|YP_005839189.1|	-	0.22	11.0	10.8	0.43	10.1	6.9	1.8	1	1	1	2	2	2	0	YMGG-like	Gly-zipper
Romo1	PF10247.4	gi|385802789|ref|YP_005839189.1|	-	0.36	11.0	4.7	0.81	9.9	1.0	2.0	1	1	1	2	2	2	0	Reactive	mitochondrial	oxygen	species	modulator	1
Bacteriocin_IIc	PF10439.4	gi|385802789|ref|YP_005839189.1|	-	6.1	7.0	8.9	34	4.6	6.2	1.9	1	1	0	1	1	1	0	Bacteriocin	class	II	with	double-glycine	leader	peptide
CbiA	PF01656.18	gi|385802791|ref|YP_005839191.1|	-	7.6e-23	80.9	0.6	9.2e-23	80.6	0.4	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Fer4_NifH	PF00142.13	gi|385802791|ref|YP_005839191.1|	-	5e-07	29.1	0.0	0.00019	20.7	0.0	2.1	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_31	PF13614.1	gi|385802791|ref|YP_005839191.1|	-	2.9e-06	27.2	0.1	4.5e-06	26.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
MipZ	PF09140.6	gi|385802791|ref|YP_005839191.1|	-	9e-05	21.6	0.6	0.00034	19.8	0.4	1.8	1	1	0	1	1	1	1	ATPase	MipZ
AAA_25	PF13481.1	gi|385802791|ref|YP_005839191.1|	-	0.0018	17.6	1.0	0.0026	17.1	0.2	1.6	2	0	0	2	2	2	1	AAA	domain
ArsA_ATPase	PF02374.10	gi|385802791|ref|YP_005839191.1|	-	0.0022	17.0	0.4	0.012	14.7	0.6	1.8	2	0	0	2	2	2	1	Anion-transporting	ATPase
VirC1	PF07015.6	gi|385802791|ref|YP_005839191.1|	-	0.015	14.3	0.5	0.026	13.6	0.4	1.3	1	0	0	1	1	1	0	VirC1	protein
AAA_30	PF13604.1	gi|385802791|ref|YP_005839191.1|	-	0.043	13.3	0.5	0.2	11.2	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
PIF1	PF05970.9	gi|385802791|ref|YP_005839191.1|	-	0.087	11.7	0.1	0.12	11.2	0.0	1.2	1	0	0	1	1	1	0	PIF1-like	helicase
AAA_26	PF13500.1	gi|385802791|ref|YP_005839191.1|	-	0.13	11.8	0.6	0.64	9.5	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
GATase_3	PF07685.9	gi|385802792|ref|YP_005839192.1|	-	3e-30	104.8	0.1	2.8e-29	101.7	0.0	2.2	1	1	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
CbiA	PF01656.18	gi|385802792|ref|YP_005839192.1|	-	3.3e-24	85.3	0.2	4.9e-24	84.8	0.1	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_26	PF13500.1	gi|385802792|ref|YP_005839192.1|	-	5.5e-18	65.3	1.1	1.9e-17	63.5	0.8	1.9	1	1	0	1	1	1	1	AAA	domain
MobB	PF03205.9	gi|385802792|ref|YP_005839192.1|	-	0.00051	19.7	0.0	0.44	10.2	0.0	3.2	3	0	0	3	3	3	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
GATase	PF00117.23	gi|385802792|ref|YP_005839192.1|	-	0.013	14.9	0.0	0.036	13.5	0.0	1.7	1	0	0	1	1	1	0	Glutamine	amidotransferase	class-I
CobA_CobO_BtuR	PF02572.10	gi|385802793|ref|YP_005839193.1|	-	1.7e-55	187.2	0.0	2.1e-55	187.0	0.0	1.1	1	0	0	1	1	1	1	ATP:corrinoid	adenosyltransferase	BtuR/CobO/CobP
CbiA	PF01656.18	gi|385802793|ref|YP_005839193.1|	-	0.062	12.6	0.2	0.11	11.8	0.1	1.3	1	0	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
IstB_IS21	PF01695.12	gi|385802793|ref|YP_005839193.1|	-	0.59	9.5	2.5	8	5.8	0.4	2.1	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
CbiZ	PF01955.13	gi|385802794|ref|YP_005839194.1|	-	2.8e-34	118.5	4.4	1.9e-29	102.8	2.7	2.4	1	1	0	2	2	2	2	Adenosylcobinamide	amidohydrolase
Aminotran_1_2	PF00155.16	gi|385802795|ref|YP_005839195.1|	-	8e-30	103.9	0.0	9.5e-30	103.7	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.12	gi|385802795|ref|YP_005839195.1|	-	0.0074	15.3	1.2	0.021	13.8	0.2	1.8	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
NeA_P2	PF12312.3	gi|385802795|ref|YP_005839195.1|	-	0.012	14.8	0.1	0.019	14.1	0.0	1.3	1	0	0	1	1	1	0	Nepovirus	subgroup	A	polyprotein
DBI_PRT	PF02277.12	gi|385802796|ref|YP_005839196.1|	-	2.9e-16	59.4	1.0	4.1e-16	59.0	0.7	1.3	1	0	0	1	1	1	1	Phosphoribosyltransferase
NTP_transf_3	PF12804.2	gi|385802797|ref|YP_005839197.1|	-	4.3e-11	43.1	0.1	4.3e-11	43.1	0.0	1.6	2	0	0	2	2	2	1	MobA-like	NTP	transferase	domain
CofC	PF01983.11	gi|385802797|ref|YP_005839197.1|	-	0.016	14.1	0.0	0.024	13.5	0.0	1.5	1	1	0	1	1	1	0	Guanylyl	transferase	CofC	like
CTP_transf_3	PF02348.14	gi|385802797|ref|YP_005839197.1|	-	0.022	14.3	0.0	0.034	13.7	0.0	1.3	1	0	0	1	1	1	0	Cytidylyltransferase
NTP_transferase	PF00483.18	gi|385802797|ref|YP_005839197.1|	-	0.038	13.3	1.0	0.17	11.1	0.0	1.9	2	0	0	2	2	2	0	Nucleotidyl	transferase
CobS	PF02654.10	gi|385802798|ref|YP_005839198.1|	-	5.7e-37	127.5	13.2	6.8e-37	127.2	9.1	1.0	1	0	0	1	1	1	1	Cobalamin-5-phosphate	synthase
DUF4400	PF14348.1	gi|385802798|ref|YP_005839198.1|	-	0.017	14.5	0.7	0.017	14.5	0.5	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4400)
CobD_Cbib	PF03186.8	gi|385802799|ref|YP_005839199.1|	-	3.2e-76	256.2	9.2	3.8e-76	255.9	6.3	1.1	1	0	0	1	1	1	1	CobD/Cbib	protein
DUF1049	PF06305.6	gi|385802799|ref|YP_005839199.1|	-	3.5	7.1	6.4	4.3	6.8	0.6	2.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1049)
HAD_2	PF13419.1	gi|385802800|ref|YP_005839200.1|	-	2.6e-19	70.0	0.0	3.1e-19	69.8	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|385802800|ref|YP_005839200.1|	-	3.5e-08	34.1	0.3	1.7e-07	31.8	0.2	1.8	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|385802800|ref|YP_005839200.1|	-	0.00015	21.4	0.0	0.00028	20.5	0.0	1.4	1	0	0	1	1	1	1	HAD-hyrolase-like
zf-ribbon_3	PF13248.1	gi|385802801|ref|YP_005839201.1|	-	1e-09	37.2	12.3	9.3e-05	21.5	2.8	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
DZR	PF12773.2	gi|385802801|ref|YP_005839201.1|	-	3.4e-08	33.1	9.6	9.5e-08	31.7	6.8	1.7	1	1	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|385802801|ref|YP_005839201.1|	-	3.4e-08	32.7	13.3	0.0003	20.1	3.6	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
RHH_1	PF01402.16	gi|385802801|ref|YP_005839201.1|	-	0.00041	20.1	0.4	0.032	14.1	0.1	2.4	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
UPF0547	PF10571.4	gi|385802801|ref|YP_005839201.1|	-	0.0026	17.4	5.3	0.6	9.8	0.2	3.2	3	0	0	3	3	3	1	Uncharacterised	protein	family	UPF0547
Cys_rich_KTR	PF14205.1	gi|385802801|ref|YP_005839201.1|	-	0.0038	16.6	2.8	1.4	8.4	0.0	2.6	2	1	0	2	2	2	2	Cysteine-rich	KTR
Zn-ribbon_8	PF09723.5	gi|385802801|ref|YP_005839201.1|	-	0.0038	17.1	8.8	1.8	8.5	0.1	3.5	2	1	1	3	3	3	2	Zinc	ribbon	domain
Nudix_N_2	PF14803.1	gi|385802801|ref|YP_005839201.1|	-	0.008	15.8	9.3	1.3	8.8	1.4	3.7	3	1	0	3	3	3	2	Nudix	N-terminal
Zn_Tnp_IS91	PF14319.1	gi|385802801|ref|YP_005839201.1|	-	0.0093	15.4	5.1	0.016	14.6	3.5	1.4	1	0	0	1	1	1	1	Transposase	zinc-binding	domain
PolC_DP2	PF03833.8	gi|385802801|ref|YP_005839201.1|	-	0.013	13.2	4.5	0.016	12.8	3.1	1.1	1	0	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
zf-C3HC4_3	PF13920.1	gi|385802801|ref|YP_005839201.1|	-	0.014	15.0	6.0	0.39	10.4	0.4	2.2	1	1	1	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
Auto_anti-p27	PF06677.7	gi|385802801|ref|YP_005839201.1|	-	0.033	13.9	7.0	0.062	13.0	1.6	2.4	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
DUF2191	PF09957.4	gi|385802801|ref|YP_005839201.1|	-	0.052	13.3	3.2	0.28	11.0	0.1	2.6	2	1	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2191)
DNA_ligase_ZBD	PF03119.11	gi|385802801|ref|YP_005839201.1|	-	0.12	12.1	2.9	6.7	6.4	0.1	2.8	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
NOB1_Zn_bind	PF08772.6	gi|385802801|ref|YP_005839201.1|	-	0.23	11.3	11.5	3.5	7.5	3.1	2.9	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
DUF164	PF02591.10	gi|385802801|ref|YP_005839201.1|	-	0.25	11.1	7.6	12	5.8	0.0	3.4	2	1	1	3	3	3	0	Putative	zinc	ribbon	domain
DUF2981	PF11200.3	gi|385802801|ref|YP_005839201.1|	-	0.36	9.8	5.1	0.6	9.1	3.6	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2981)
DUF2321	PF10083.4	gi|385802801|ref|YP_005839201.1|	-	0.52	9.7	3.8	0.55	9.7	1.9	1.6	2	0	0	2	2	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2321)
OrfB_Zn_ribbon	PF07282.6	gi|385802801|ref|YP_005839201.1|	-	0.57	9.8	11.2	0.084	12.5	1.9	2.8	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
zf-NADH-PPase	PF09297.6	gi|385802801|ref|YP_005839201.1|	-	0.7	9.4	12.4	0.86	9.1	0.6	2.9	3	0	0	3	3	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zinc-ribbons_6	PF07191.7	gi|385802801|ref|YP_005839201.1|	-	0.79	9.5	8.9	8	6.3	6.3	2.1	1	1	1	2	2	2	0	zinc-ribbons
zf-ISL3	PF14690.1	gi|385802801|ref|YP_005839201.1|	-	0.83	9.7	8.4	5.4	7.1	0.5	3.3	2	1	1	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Ribosomal_L32p	PF01783.18	gi|385802801|ref|YP_005839201.1|	-	0.91	9.7	7.2	9.3	6.5	5.0	2.6	1	1	0	1	1	1	0	Ribosomal	L32p	protein	family
Ogr_Delta	PF04606.7	gi|385802801|ref|YP_005839201.1|	-	1.6	8.4	7.9	1.7	8.3	0.3	3.2	3	0	0	3	3	3	0	Ogr/Delta-like	zinc	finger
zf-H2C2_2	PF13465.1	gi|385802801|ref|YP_005839201.1|	-	1.7	9.0	6.6	47	4.5	0.1	3.5	3	0	0	3	3	3	0	Zinc-finger	double	domain
NRDD	PF13597.1	gi|385802801|ref|YP_005839201.1|	-	2.4	6.1	7.3	1	7.3	3.1	1.7	1	1	1	2	2	2	0	Anaerobic	ribonucleoside-triphosphate	reductase
Cript	PF10235.4	gi|385802801|ref|YP_005839201.1|	-	3.2	8.1	9.7	3.4	8.0	4.2	2.6	1	1	1	2	2	2	0	Microtubule-associated	protein	CRIPT
DUF1610	PF07754.6	gi|385802801|ref|YP_005839201.1|	-	3.3	7.8	14.2	16	5.7	4.8	3.3	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
ADK_lid	PF05191.9	gi|385802801|ref|YP_005839201.1|	-	3.6	7.3	6.6	51	3.6	0.0	3.5	3	0	0	3	3	3	0	Adenylate	kinase,	active	site	lid
Sgf11	PF08209.6	gi|385802801|ref|YP_005839201.1|	-	4	6.8	9.9	17	4.7	0.0	3.3	3	0	0	3	3	3	0	Sgf11	(transcriptional	regulation	protein)
Prim_Zn_Ribbon	PF08273.7	gi|385802801|ref|YP_005839201.1|	-	4.3	7.4	14.1	1	9.4	5.6	2.6	1	1	1	2	2	2	0	Zinc-binding	domain	of	primase-helicase
DUF1272	PF06906.6	gi|385802801|ref|YP_005839201.1|	-	5.8	6.8	9.3	0.33	10.8	0.7	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1272)
Cys_rich_CPXG	PF14255.1	gi|385802801|ref|YP_005839201.1|	-	9.2	6.1	9.2	32	4.4	3.9	2.7	2	1	0	2	2	2	0	Cysteine-rich	CPXCG
Zn_ribbon_recom	PF13408.1	gi|385802801|ref|YP_005839201.1|	-	9.5	6.5	8.7	3.1	8.1	0.1	3.3	2	1	1	3	3	3	0	Recombinase	zinc	beta	ribbon	domain
zf-C4_Topoisom	PF01396.14	gi|385802801|ref|YP_005839201.1|	-	9.9	5.7	10.4	21	4.7	0.1	3.7	4	0	0	4	4	4	0	Topoisomerase	DNA	binding	C4	zinc	finger
RHH_1	PF01402.16	gi|385802802|ref|YP_005839202.1|	-	6.2e-08	32.2	0.1	7.9e-08	31.8	0.1	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
CHASE3	PF05227.8	gi|385802802|ref|YP_005839202.1|	-	0.16	11.6	1.0	0.16	11.6	0.7	1.1	1	0	0	1	1	1	0	CHASE3	domain
FtsZ_C	PF12327.3	gi|385802803|ref|YP_005839203.1|	-	5.4e-35	119.3	0.7	5.4e-35	119.3	0.5	2.7	2	1	1	3	3	3	1	FtsZ	family,	C-terminal	domain
Tubulin	PF00091.20	gi|385802803|ref|YP_005839203.1|	-	8.6e-33	113.9	2.6	4e-32	111.8	1.8	2.0	1	1	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
ThiF	PF00899.16	gi|385802803|ref|YP_005839203.1|	-	0.046	13.5	0.1	0.13	12.1	0.0	1.7	1	0	0	1	1	1	0	ThiF	family
Methyltransf_11	PF08241.7	gi|385802804|ref|YP_005839204.1|	-	2.8e-14	53.3	0.0	7.6e-14	51.9	0.0	1.7	1	1	1	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|385802804|ref|YP_005839204.1|	-	4.2e-13	49.1	0.0	5.4e-13	48.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|385802804|ref|YP_005839204.1|	-	2.9e-09	37.2	0.0	6.4e-09	36.0	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|385802804|ref|YP_005839204.1|	-	1e-08	35.0	0.0	1.6e-08	34.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|385802804|ref|YP_005839204.1|	-	3.8e-07	29.4	0.0	5.7e-07	28.8	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.7	gi|385802804|ref|YP_005839204.1|	-	4e-07	30.4	0.1	1.3e-06	28.8	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|385802804|ref|YP_005839204.1|	-	2.6e-06	28.0	0.9	1.5e-05	25.5	0.6	2.2	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|385802804|ref|YP_005839204.1|	-	1.3e-05	25.2	9.6	8.9e-05	22.5	0.0	2.6	2	1	0	2	2	2	1	Methyltransferase	domain
MTS	PF05175.9	gi|385802804|ref|YP_005839204.1|	-	0.0018	17.6	0.2	0.0051	16.2	0.0	1.8	2	1	0	2	2	2	1	Methyltransferase	small	domain
RrnaAD	PF00398.15	gi|385802804|ref|YP_005839204.1|	-	0.0044	16.0	0.0	0.0079	15.2	0.0	1.4	1	1	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
FtsJ	PF01728.14	gi|385802804|ref|YP_005839204.1|	-	0.0051	16.8	0.0	0.0073	16.3	0.0	1.3	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
PCMT	PF01135.14	gi|385802804|ref|YP_005839204.1|	-	0.0075	15.8	0.0	0.032	13.7	0.0	1.9	2	0	0	2	2	2	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MetW	PF07021.7	gi|385802804|ref|YP_005839204.1|	-	0.013	14.9	0.0	0.021	14.1	0.0	1.3	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Methyltransf_32	PF13679.1	gi|385802804|ref|YP_005839204.1|	-	0.057	13.1	0.0	0.16	11.6	0.0	1.6	1	1	0	1	1	1	0	Methyltransferase	domain
PrmA	PF06325.8	gi|385802804|ref|YP_005839204.1|	-	0.075	12.1	0.2	0.18	10.8	0.0	1.6	1	1	1	2	2	2	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
AP_endonuc_2	PF01261.19	gi|385802805|ref|YP_005839205.1|	-	3.8e-25	88.4	0.4	6.7e-25	87.6	0.1	1.5	2	0	0	2	2	2	1	Xylose	isomerase-like	TIM	barrel
Aldedh	PF00171.17	gi|385802806|ref|YP_005839206.1|	-	3.8e-140	467.3	0.0	4.2e-140	467.1	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
RIO1	PF01163.17	gi|385802807|ref|YP_005839207.1|	-	2.7e-45	154.0	0.4	3.9e-45	153.5	0.3	1.1	1	0	0	1	1	1	1	RIO1	family
Rio2_N	PF09202.6	gi|385802807|ref|YP_005839207.1|	-	6.4e-26	90.2	0.0	1.4e-25	89.1	0.0	1.6	1	0	0	1	1	1	1	Rio2,	N-terminal
APH	PF01636.18	gi|385802807|ref|YP_005839207.1|	-	0.0022	17.7	0.5	0.5	10.0	0.0	2.7	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
ABC_tran	PF00005.22	gi|385802808|ref|YP_005839208.1|	-	2.6e-29	102.2	0.0	2.6e-28	99.0	0.0	2.1	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.1	gi|385802808|ref|YP_005839208.1|	-	4.8e-09	36.5	0.1	0.00018	21.5	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
TOBE	PF03459.12	gi|385802808|ref|YP_005839208.1|	-	3.9e-07	30.0	2.9	3.7e-05	23.7	0.2	2.5	2	0	0	2	2	2	1	TOBE	domain
TOBE_2	PF08402.5	gi|385802808|ref|YP_005839208.1|	-	1.8e-06	27.8	0.3	1.1e-05	25.3	0.1	2.4	2	0	0	2	2	2	1	TOBE	domain
SMC_N	PF02463.14	gi|385802808|ref|YP_005839208.1|	-	0.00018	20.8	0.0	0.53	9.4	0.0	2.3	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|385802808|ref|YP_005839208.1|	-	0.00038	19.9	0.2	0.0014	18.0	0.0	2.0	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|385802808|ref|YP_005839208.1|	-	0.00063	19.7	0.6	0.002	18.1	0.4	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_19	PF13245.1	gi|385802808|ref|YP_005839208.1|	-	0.0018	18.0	0.1	0.0095	15.6	0.0	2.2	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_33	PF13671.1	gi|385802808|ref|YP_005839208.1|	-	0.006	16.4	0.6	0.047	13.5	0.4	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|385802808|ref|YP_005839208.1|	-	0.0097	16.0	0.2	0.053	13.6	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.1	gi|385802808|ref|YP_005839208.1|	-	0.01	15.4	0.0	0.063	12.8	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_25	PF13481.1	gi|385802808|ref|YP_005839208.1|	-	0.013	14.8	0.0	0.073	12.4	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
DUF258	PF03193.11	gi|385802808|ref|YP_005839208.1|	-	0.016	14.3	0.0	0.038	13.1	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_23	PF13476.1	gi|385802808|ref|YP_005839208.1|	-	0.025	14.9	0.0	0.039	14.2	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_17	PF13207.1	gi|385802808|ref|YP_005839208.1|	-	0.026	15.3	0.1	0.04	14.7	0.1	1.4	1	1	0	1	1	1	0	AAA	domain
AAA_15	PF13175.1	gi|385802808|ref|YP_005839208.1|	-	0.03	13.3	0.0	4.6	6.1	0.0	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
MobB	PF03205.9	gi|385802808|ref|YP_005839208.1|	-	0.065	12.9	0.1	0.18	11.5	0.1	1.7	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Arch_ATPase	PF01637.13	gi|385802808|ref|YP_005839208.1|	-	0.2	11.3	0.0	0.32	10.6	0.0	1.2	1	0	0	1	1	1	0	Archaeal	ATPase
BPD_transp_1	PF00528.17	gi|385802809|ref|YP_005839209.1|	-	3e-19	69.2	13.5	3e-19	69.2	9.4	1.9	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF4212	PF13937.1	gi|385802809|ref|YP_005839209.1|	-	0.097	12.6	2.5	0.25	11.3	0.6	2.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4212)
SBP_bac_11	PF13531.1	gi|385802810|ref|YP_005839210.1|	-	2.1e-19	70.1	0.1	3.1e-19	69.5	0.1	1.4	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
DUF4251	PF14059.1	gi|385802810|ref|YP_005839210.1|	-	0.015	15.1	0.1	0.036	13.8	0.0	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4251)
Ribosomal_L15e	PF00827.12	gi|385802811|ref|YP_005839211.1|	-	6.4e-82	273.7	4.8	7.3e-82	273.5	3.3	1.0	1	0	0	1	1	1	1	Ribosomal	L15
ThiF	PF00899.16	gi|385802812|ref|YP_005839212.1|	-	1.3e-43	148.0	0.1	1.8e-43	147.5	0.1	1.2	1	0	0	1	1	1	1	ThiF	family
MoeZ_MoeB	PF05237.8	gi|385802812|ref|YP_005839212.1|	-	3e-31	106.8	0.1	4.9e-31	106.1	0.1	1.4	1	0	0	1	1	1	1	MoeZ/MoeB	domain
Shikimate_DH	PF01488.15	gi|385802812|ref|YP_005839212.1|	-	0.00069	19.7	0.0	0.0012	18.9	0.0	1.4	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
ApbA	PF02558.11	gi|385802812|ref|YP_005839212.1|	-	0.013	14.9	0.0	0.019	14.4	0.0	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Saccharop_dh	PF03435.13	gi|385802812|ref|YP_005839212.1|	-	0.018	14.0	0.2	0.03	13.3	0.1	1.4	1	1	0	1	1	1	0	Saccharopine	dehydrogenase
XdhC_C	PF13478.1	gi|385802812|ref|YP_005839212.1|	-	0.026	14.8	0.0	0.039	14.2	0.0	1.2	1	0	0	1	1	1	0	XdhC	Rossmann	domain
NAD_binding_7	PF13241.1	gi|385802812|ref|YP_005839212.1|	-	0.031	14.5	0.0	0.058	13.6	0.0	1.4	1	0	0	1	1	1	0	Putative	NAD(P)-binding
UbiA	PF01040.13	gi|385802813|ref|YP_005839213.1|	-	2.7e-29	102.1	20.9	3.5e-29	101.8	14.5	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
DUF1643	PF07799.7	gi|385802814|ref|YP_005839214.1|	-	6.3e-42	142.4	0.0	7.7e-42	142.2	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1643)
DUF134	PF02001.11	gi|385802816|ref|YP_005839216.1|	-	1.2e-05	25.1	0.0	1.4e-05	24.9	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF134
Sigma70_r4_2	PF08281.7	gi|385802816|ref|YP_005839216.1|	-	0.00068	19.0	0.0	0.00093	18.6	0.0	1.1	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_40	PF14493.1	gi|385802816|ref|YP_005839216.1|	-	0.0018	18.4	0.1	0.0021	18.2	0.1	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_28	PF13518.1	gi|385802816|ref|YP_005839216.1|	-	0.025	14.6	0.0	0.035	14.0	0.0	1.4	1	1	0	1	1	1	0	Helix-turn-helix	domain
Sigma70_r4	PF04545.11	gi|385802816|ref|YP_005839216.1|	-	0.079	12.2	0.0	0.1	11.9	0.0	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_10	PF04967.7	gi|385802816|ref|YP_005839216.1|	-	0.14	11.8	0.0	0.26	10.8	0.0	1.5	2	0	0	2	2	2	0	HTH	DNA	binding	domain
SnoaL_2	PF12680.2	gi|385802817|ref|YP_005839217.1|	-	1.1e-08	35.3	0.2	1.4e-08	35.0	0.2	1.1	1	0	0	1	1	1	1	SnoaL-like	domain
DUF4440	PF14534.1	gi|385802817|ref|YP_005839217.1|	-	6.3e-05	23.1	0.2	7.4e-05	22.9	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4440)
SnoaL	PF07366.7	gi|385802817|ref|YP_005839217.1|	-	0.00069	19.2	0.1	0.0008	18.9	0.1	1.1	1	0	0	1	1	1	1	SnoaL-like	polyketide	cyclase
SnoaL_4	PF13577.1	gi|385802817|ref|YP_005839217.1|	-	0.004	17.0	0.1	0.0047	16.8	0.1	1.2	1	0	0	1	1	1	1	SnoaL-like	domain
SnoaL_3	PF13474.1	gi|385802817|ref|YP_005839217.1|	-	0.015	15.2	0.0	0.019	14.9	0.0	1.2	1	0	0	1	1	1	0	SnoaL-like	domain
NTF2	PF02136.15	gi|385802817|ref|YP_005839217.1|	-	0.04	14.2	0.2	0.05	13.9	0.1	1.2	1	0	0	1	1	1	0	Nuclear	transport	factor	2	(NTF2)	domain
CBS	PF00571.23	gi|385802818|ref|YP_005839218.1|	-	1.3e-26	92.1	0.8	1e-12	47.5	0.0	2.2	2	0	0	2	2	2	2	CBS	domain
ABC_tran	PF00005.22	gi|385802819|ref|YP_005839219.1|	-	3.4e-37	127.8	0.0	8.4e-37	126.5	0.0	1.7	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.5	gi|385802819|ref|YP_005839219.1|	-	2.4e-13	49.8	0.0	6.1e-13	48.5	0.0	1.7	1	0	0	1	1	1	1	TOBE	domain
AAA_21	PF13304.1	gi|385802819|ref|YP_005839219.1|	-	5.4e-07	29.8	0.6	0.0073	16.3	0.0	2.8	2	1	1	3	3	3	2	AAA	domain
TOBE	PF03459.12	gi|385802819|ref|YP_005839219.1|	-	0.00043	20.3	0.0	0.11	12.6	0.0	2.6	2	0	0	2	2	2	1	TOBE	domain
AAA_15	PF13175.1	gi|385802819|ref|YP_005839219.1|	-	0.00048	19.2	0.5	0.063	12.3	0.0	2.9	3	0	0	3	3	3	1	AAA	ATPase	domain
AAA_16	PF13191.1	gi|385802819|ref|YP_005839219.1|	-	0.0019	18.1	1.3	0.0035	17.3	0.0	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
SMC_N	PF02463.14	gi|385802819|ref|YP_005839219.1|	-	0.0024	17.1	2.7	0.16	11.2	0.1	2.5	2	1	1	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
DUF258	PF03193.11	gi|385802819|ref|YP_005839219.1|	-	0.015	14.4	0.0	0.03	13.4	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA	PF00004.24	gi|385802819|ref|YP_005839219.1|	-	0.017	15.3	0.2	0.093	12.9	0.1	2.2	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|385802819|ref|YP_005839219.1|	-	0.021	14.9	0.6	0.092	12.8	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_29	PF13555.1	gi|385802819|ref|YP_005839219.1|	-	0.024	14.1	0.0	0.066	12.7	0.0	1.7	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_14	PF13173.1	gi|385802819|ref|YP_005839219.1|	-	0.025	14.4	0.0	0.11	12.4	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
Rad17	PF03215.10	gi|385802819|ref|YP_005839219.1|	-	0.035	12.8	0.0	0.055	12.1	0.0	1.3	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
ATP-synt_ab	PF00006.20	gi|385802819|ref|YP_005839219.1|	-	0.05	13.0	0.0	0.14	11.6	0.0	1.3	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_25	PF13481.1	gi|385802819|ref|YP_005839219.1|	-	0.069	12.5	0.0	0.2	11.0	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
Miro	PF08477.8	gi|385802819|ref|YP_005839219.1|	-	0.14	12.6	0.3	0.5	10.8	0.0	2.1	3	0	0	3	3	1	0	Miro-like	protein
BPD_transp_1	PF00528.17	gi|385802820|ref|YP_005839220.1|	-	1.7e-18	66.8	24.0	1.7e-18	66.8	16.7	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|385802821|ref|YP_005839221.1|	-	6.4e-14	51.8	18.6	6.4e-14	51.8	12.9	2.1	2	0	0	2	2	2	2	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_8	PF13416.1	gi|385802822|ref|YP_005839222.1|	-	4.3e-29	102.1	0.0	6.9e-29	101.4	0.0	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.1	gi|385802822|ref|YP_005839222.1|	-	9.2e-19	67.7	0.1	1.3e-18	67.2	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|385802822|ref|YP_005839222.1|	-	6.3e-05	22.8	0.1	0.00076	19.2	0.0	2.1	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.4	gi|385802822|ref|YP_005839222.1|	-	0.0032	17.3	0.9	0.0062	16.4	0.7	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
SBP_bac_11	PF13531.1	gi|385802822|ref|YP_005839222.1|	-	0.024	14.2	0.0	0.081	12.5	0.0	1.9	1	1	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
UCR_Fe-S_N	PF10399.4	gi|385802822|ref|YP_005839222.1|	-	0.07	12.3	0.1	0.14	11.3	0.1	1.5	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
tRNA_anti-codon	PF01336.20	gi|385802823|ref|YP_005839223.1|	-	4.2e-29	100.2	8.3	1.5e-11	44.0	0.1	4.1	4	0	0	4	4	4	3	OB-fold	nucleic	acid	binding	domain
Rep_fac-A_C	PF08646.5	gi|385802823|ref|YP_005839223.1|	-	0.0026	17.4	0.2	1.2	8.8	0.0	3.3	3	0	0	3	3	3	1	Replication	factor-A	C	terminal	domain
CBFD_NFYB_HMF	PF00808.18	gi|385802824|ref|YP_005839224.1|	-	1.9e-24	85.5	0.5	1.8e-14	53.5	0.1	2.0	2	0	0	2	2	2	2	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
Histone	PF00125.19	gi|385802824|ref|YP_005839224.1|	-	9e-15	54.5	0.9	1.3e-10	41.2	0.3	2.1	2	0	0	2	2	2	2	Core	histone	H2A/H2B/H3/H4
CENP-S	PF15630.1	gi|385802824|ref|YP_005839224.1|	-	0.00041	20.4	0.1	0.00068	19.7	0.1	1.3	1	0	0	1	1	1	1	Kinetochore	component	CENP-S
TFIID_20kDa	PF03847.8	gi|385802824|ref|YP_005839224.1|	-	0.002	18.3	0.2	0.0033	17.6	0.1	1.3	1	0	0	1	1	1	1	Transcription	initiation	factor	TFIID	subunit	A
TFIID-31kDa	PF02291.10	gi|385802824|ref|YP_005839224.1|	-	0.051	13.3	0.3	0.089	12.5	0.2	1.4	1	0	0	1	1	1	0	Transcription	initiation	factor	IID,	31kD	subunit
Hist_deacetyl	PF00850.14	gi|385802825|ref|YP_005839225.1|	-	7.8e-83	278.3	0.0	9.5e-83	278.0	0.0	1.0	1	0	0	1	1	1	1	Histone	deacetylase	domain
tRNA_NucTransf2	PF09249.6	gi|385802826|ref|YP_005839226.1|	-	3.8e-43	145.9	0.0	6.3e-43	145.2	0.0	1.3	1	0	0	1	1	1	1	tRNA	nucleotidyltransferase,	second	domain
NTP_transf_2	PF01909.18	gi|385802826|ref|YP_005839226.1|	-	2.2e-13	50.3	0.0	5.2e-13	49.1	0.0	1.6	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
DUF457	PF04307.9	gi|385802827|ref|YP_005839227.1|	-	4.1e-14	52.1	8.8	5.2e-14	51.8	6.1	1.1	1	0	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
DUF2189	PF09955.4	gi|385802827|ref|YP_005839227.1|	-	0.56	10.1	9.4	0.66	9.9	0.2	2.8	2	1	1	3	3	3	0	Predicted	integral	membrane	protein	(DUF2189)
Yip1	PF04893.12	gi|385802827|ref|YP_005839227.1|	-	6.7	6.1	13.8	6.8	6.1	7.7	2.2	1	1	0	1	1	1	0	Yip1	domain
NMT1	PF09084.6	gi|385802830|ref|YP_005839230.1|	-	1.4e-10	41.1	1.9	4.6e-10	39.4	0.2	2.2	2	1	0	2	2	2	1	NMT1/THI5	like
Phosphonate-bd	PF12974.2	gi|385802830|ref|YP_005839230.1|	-	4e-08	32.9	1.8	7.7e-08	32.0	1.2	1.4	1	1	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
NMT1_2	PF13379.1	gi|385802830|ref|YP_005839230.1|	-	0.0032	16.8	0.7	0.038	13.3	0.4	2.1	1	1	1	2	2	2	2	NMT1-like	family
SBP_bac_3	PF00497.15	gi|385802830|ref|YP_005839230.1|	-	0.0044	16.3	0.3	0.01	15.1	0.1	1.6	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	3
DUF1850	PF08905.6	gi|385802831|ref|YP_005839231.1|	-	3.1e-23	81.4	0.0	4.6e-23	80.8	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1850)
DctM	PF06808.7	gi|385802832|ref|YP_005839232.1|	-	1.2e-78	264.5	46.0	4.3e-53	180.3	16.0	3.7	4	0	0	4	4	4	2	DctM-like	transporters
FAD_binding_7	PF03441.9	gi|385802833|ref|YP_005839233.1|	-	1.7e-73	247.2	1.2	1.7e-73	247.2	0.9	1.7	2	0	0	2	2	2	1	FAD	binding	domain	of	DNA	photolyase
DNA_photolyase	PF00875.13	gi|385802833|ref|YP_005839233.1|	-	2.4e-15	56.6	0.0	1.3e-11	44.5	0.1	2.7	3	0	0	3	3	3	2	DNA	photolyase
Cytochrom_CIII	PF02085.11	gi|385802834|ref|YP_005839234.1|	-	0.055	13.5	0.4	0.056	13.5	0.3	1.0	1	0	0	1	1	1	0	Class	III	cytochrome	C	family
HypA	PF01155.14	gi|385802834|ref|YP_005839234.1|	-	0.12	12.0	0.7	0.14	11.8	0.5	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
MARVEL	PF01284.18	gi|385802835|ref|YP_005839235.1|	-	2	8.2	9.9	2.5	7.9	0.5	2.2	1	1	1	2	2	2	0	Membrane-associating	domain
Herpes_LMP1	PF05297.6	gi|385802835|ref|YP_005839235.1|	-	4.6	6.0	9.4	5.1	5.9	6.5	1.1	1	0	0	1	1	1	0	Herpesvirus	latent	membrane	protein	1	(LMP1)
UPF0047	PF01894.12	gi|385802836|ref|YP_005839236.1|	-	1e-35	122.1	0.3	1.2e-35	121.8	0.2	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0047
AAA_18	PF13238.1	gi|385802837|ref|YP_005839237.1|	-	0.0031	17.8	0.0	0.0045	17.3	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|385802837|ref|YP_005839237.1|	-	0.0088	16.0	0.2	0.016	15.1	0.1	1.5	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_33	PF13671.1	gi|385802837|ref|YP_005839237.1|	-	0.0095	15.8	0.5	0.026	14.3	0.3	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|385802837|ref|YP_005839237.1|	-	0.043	14.6	0.0	0.053	14.3	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|385802837|ref|YP_005839237.1|	-	0.09	12.9	0.0	0.14	12.3	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Form_Nir_trans	PF01226.12	gi|385802839|ref|YP_005839239.1|	-	2e-53	180.8	13.2	2.5e-53	180.5	9.2	1.1	1	0	0	1	1	1	1	Formate/nitrite	transporter
Usp	PF00582.21	gi|385802839|ref|YP_005839239.1|	-	3.9e-17	62.7	4.8	6.7e-09	36.0	0.0	2.5	2	0	0	2	2	2	2	Universal	stress	protein	family
AAA_26	PF13500.1	gi|385802839|ref|YP_005839239.1|	-	0.18	11.3	1.2	0.49	9.9	0.1	2.1	3	0	0	3	3	3	0	AAA	domain
UPF0233	PF06781.7	gi|385802839|ref|YP_005839239.1|	-	0.42	10.2	0.0	0.42	10.2	0.0	2.8	2	2	1	3	3	3	0	Uncharacterised	protein	family	(UPF0233)
zf-ribbon_3	PF13248.1	gi|385802840|ref|YP_005839240.1|	-	4.8e-05	22.4	1.1	7.2e-05	21.8	0.8	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|385802840|ref|YP_005839240.1|	-	4.9e-05	23.0	0.9	7e-05	22.5	0.6	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
TM2	PF05154.11	gi|385802840|ref|YP_005839240.1|	-	0.00022	21.3	0.5	0.00031	20.8	0.4	1.2	1	0	0	1	1	1	1	TM2	domain
UPF0547	PF10571.4	gi|385802840|ref|YP_005839240.1|	-	0.0063	16.1	0.7	0.012	15.2	0.5	1.5	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
zinc_ribbon_2	PF13240.1	gi|385802840|ref|YP_005839240.1|	-	0.027	13.9	0.1	0.041	13.3	0.1	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
TerY-C	PF15616.1	gi|385802840|ref|YP_005839240.1|	-	0.12	12.2	2.2	2	8.3	0.1	2.1	1	1	1	2	2	2	0	TerY-C	metal	binding	domain
DUF1083	PF06452.6	gi|385802841|ref|YP_005839241.1|	-	0.0022	17.9	1.2	0.0029	17.5	0.8	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1083)
PsiE	PF06146.7	gi|385802842|ref|YP_005839242.1|	-	3.8e-14	52.6	3.9	7e-14	51.8	2.7	1.5	1	0	0	1	1	1	1	Phosphate-starvation-inducible	E
TspO_MBR	PF03073.10	gi|385802842|ref|YP_005839242.1|	-	0.0079	15.7	0.9	0.01	15.3	0.7	1.1	1	0	0	1	1	1	1	TspO/MBR	family
7tm_3	PF00003.17	gi|385802842|ref|YP_005839242.1|	-	0.043	13.1	0.6	0.053	12.8	0.1	1.4	2	0	0	2	2	2	0	7	transmembrane	sweet-taste	receptor	of	3	GCPR
DUF2537	PF10801.3	gi|385802842|ref|YP_005839242.1|	-	0.19	11.8	5.2	4.4	7.4	0.1	2.7	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF2537)
Rnf-Nqr	PF02508.9	gi|385802842|ref|YP_005839242.1|	-	0.42	10.1	4.4	1.1	8.8	3.1	1.6	1	1	0	1	1	1	0	Rnf-Nqr	subunit,	membrane	protein
YoqO	PF14037.1	gi|385802842|ref|YP_005839242.1|	-	0.6	10.2	5.2	0.79	9.8	3.6	1.2	1	0	0	1	1	1	0	YoqO-like	protein
Chromate_transp	PF02417.10	gi|385802842|ref|YP_005839242.1|	-	1.9	8.0	7.2	0.44	10.1	2.4	1.7	2	0	0	2	2	2	0	Chromate	transporter
PfkB	PF00294.19	gi|385802843|ref|YP_005839243.1|	-	7.1e-42	143.5	0.5	8e-42	143.4	0.4	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
DUF4434	PF14488.1	gi|385802843|ref|YP_005839243.1|	-	0.12	12.1	0.0	0.22	11.2	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4434)
DNA_mis_repair	PF01119.14	gi|385802844|ref|YP_005839244.1|	-	9.8e-38	128.2	0.0	2e-37	127.2	0.0	1.5	1	0	0	1	1	1	1	DNA	mismatch	repair	protein,	C-terminal	domain
MutL_C	PF08676.6	gi|385802844|ref|YP_005839244.1|	-	9.8e-36	122.5	0.0	1.6e-35	121.8	0.0	1.4	1	0	0	1	1	1	1	MutL	C	terminal	dimerisation	domain
HATPase_c_3	PF13589.1	gi|385802844|ref|YP_005839244.1|	-	4.6e-13	49.0	0.2	4.6e-13	49.0	0.2	2.8	2	1	1	3	3	3	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.21	gi|385802844|ref|YP_005839244.1|	-	6.7e-11	41.8	0.8	2.4e-10	40.1	0.3	2.2	2	1	1	3	3	3	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
NUDIX	PF00293.23	gi|385802845|ref|YP_005839245.1|	-	8.9e-17	60.9	0.1	1.1e-16	60.7	0.0	1.1	1	0	0	1	1	1	1	NUDIX	domain
Transglut_i_TM	PF14400.1	gi|385802845|ref|YP_005839245.1|	-	0.096	12.1	0.0	0.14	11.6	0.0	1.2	1	0	0	1	1	1	0	Inactive	transglutaminase	fused	to	7	transmembrane	helices
NUDIX_2	PF13869.1	gi|385802845|ref|YP_005839245.1|	-	0.1	11.9	0.0	0.13	11.5	0.0	1.2	1	0	0	1	1	1	0	Nucleotide	hydrolase
CARDB	PF07705.6	gi|385802846|ref|YP_005839246.1|	-	0.00069	19.6	0.0	0.0012	18.8	0.0	1.4	1	0	0	1	1	1	1	CARDB
IncA	PF04156.9	gi|385802846|ref|YP_005839246.1|	-	0.086	12.4	0.1	0.2	11.2	0.0	1.7	2	0	0	2	2	2	0	IncA	protein
DUF1469	PF07332.6	gi|385802846|ref|YP_005839246.1|	-	9.9	5.9	9.8	1.1	9.0	3.7	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1469)
SBBP	PF06739.6	gi|385802848|ref|YP_005839248.1|	-	0.00095	18.9	0.2	1.2	9.0	0.0	2.7	3	0	0	3	3	3	2	Beta-propeller	repeat
DNA_repr_REX1B	PF14966.1	gi|385802849|ref|YP_005839249.1|	-	0.01	16.1	2.2	0.026	14.8	0.1	2.4	2	1	0	2	2	2	0	DNA	repair	REX1-B
Snapin_Pallidin	PF14712.1	gi|385802849|ref|YP_005839249.1|	-	0.036	14.3	6.5	0.63	10.3	0.2	3.1	2	1	1	3	3	3	0	Snapin/Pallidin
Lipoprotein_7	PF01540.11	gi|385802849|ref|YP_005839249.1|	-	0.038	13.0	2.6	0.11	11.5	0.2	2.2	2	1	0	2	2	2	0	Adhesin	lipoprotein
DUF3080	PF11279.3	gi|385802849|ref|YP_005839249.1|	-	0.053	12.6	2.9	0.16	11.1	0.4	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3080)
DUF1886	PF09171.5	gi|385802849|ref|YP_005839249.1|	-	0.07	12.1	0.1	0.13	11.2	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1886)
Lge1	PF11488.3	gi|385802849|ref|YP_005839249.1|	-	0.1	12.8	5.7	2.6	8.3	0.5	3.6	2	1	0	3	3	3	0	Transcriptional	regulatory	protein	LGE1
Homeobox	PF00046.24	gi|385802849|ref|YP_005839249.1|	-	0.13	11.8	0.9	0.99	9.0	0.0	2.6	3	0	0	3	3	2	0	Homeobox	domain
Ubiquitin_3	PF14836.1	gi|385802849|ref|YP_005839249.1|	-	0.14	11.8	1.8	0.22	11.2	0.2	2.1	2	1	0	2	2	2	0	Ubiquitin-like	domain
CK2S	PF15011.1	gi|385802849|ref|YP_005839249.1|	-	0.24	11.1	4.1	2.4	7.8	0.3	2.4	2	0	0	2	2	2	0	Casein	Kinase	2	substrate
BRX_N	PF13713.1	gi|385802849|ref|YP_005839249.1|	-	0.28	10.6	5.9	3.3	7.2	0.2	3.4	3	0	0	3	3	3	0	Transcription	factor	BRX	N-terminal	domain
Nup54	PF13874.1	gi|385802849|ref|YP_005839249.1|	-	0.3	10.7	6.6	1.4	8.5	3.7	2.4	1	1	1	2	2	2	0	Nucleoporin	complex	subunit	54
DUF1090	PF06476.7	gi|385802849|ref|YP_005839249.1|	-	0.32	10.6	3.6	1.7	8.3	0.3	2.9	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1090)
COG2	PF06148.6	gi|385802849|ref|YP_005839249.1|	-	0.77	9.6	9.8	8.7	6.2	0.4	3.1	1	1	1	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Spore_YhcN_YlaJ	PF09580.5	gi|385802849|ref|YP_005839249.1|	-	0.78	9.8	9.8	20	5.2	5.9	3.2	2	1	0	2	2	2	0	Sporulation	lipoprotein	YhcN/YlaJ	(Spore_YhcN_YlaJ)
Spc7	PF08317.6	gi|385802849|ref|YP_005839249.1|	-	0.79	8.3	11.3	0.41	9.2	2.0	2.2	1	1	0	2	2	2	0	Spc7	kinetochore	protein
T2SF	PF00482.18	gi|385802849|ref|YP_005839249.1|	-	1	9.2	3.9	2.4	8.0	0.3	2.7	1	1	1	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	F
DUF1664	PF07889.7	gi|385802849|ref|YP_005839249.1|	-	2	8.1	8.1	2.6	7.8	0.7	2.4	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1664)
DUF972	PF06156.8	gi|385802849|ref|YP_005839249.1|	-	3.2	8.1	8.7	4.2	7.7	0.3	2.6	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF972)
HalX	PF08663.5	gi|385802849|ref|YP_005839249.1|	-	4.3	7.4	15.0	0.14	12.1	0.5	4.5	4	1	1	5	5	5	0	HalX	domain
Acetyltransf_9	PF13527.1	gi|385802850|ref|YP_005839250.1|	-	0.052	13.3	0.0	0.1	12.4	0.0	1.4	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
AAA	PF00004.24	gi|385802851|ref|YP_005839251.1|	-	3e-29	101.9	0.0	7.3e-29	100.6	0.0	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|385802851|ref|YP_005839251.1|	-	6.6e-05	23.0	0.1	0.00059	19.9	0.1	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_5	PF07728.9	gi|385802851|ref|YP_005839251.1|	-	0.00013	21.6	0.2	0.0007	19.3	0.0	2.3	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
IstB_IS21	PF01695.12	gi|385802851|ref|YP_005839251.1|	-	0.00018	20.9	0.0	0.0025	17.2	0.0	2.3	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_16	PF13191.1	gi|385802851|ref|YP_005839251.1|	-	0.00033	20.6	0.7	0.0098	15.8	0.0	2.5	1	1	0	2	2	2	1	AAA	ATPase	domain
AAA_25	PF13481.1	gi|385802851|ref|YP_005839251.1|	-	0.0021	17.4	0.5	0.083	12.2	0.0	2.6	2	1	1	3	3	3	1	AAA	domain
AAA_33	PF13671.1	gi|385802851|ref|YP_005839251.1|	-	0.003	17.4	0.0	0.0067	16.3	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
CDC48_2	PF02933.12	gi|385802851|ref|YP_005839251.1|	-	0.01	15.4	0.0	0.022	14.3	0.0	1.6	1	0	0	1	1	1	0	Cell	division	protein	48	(CDC48),	domain	2
AAA_28	PF13521.1	gi|385802851|ref|YP_005839251.1|	-	0.011	15.7	0.0	0.043	13.7	0.0	2.0	2	1	0	2	2	2	0	AAA	domain
RuvB_N	PF05496.7	gi|385802851|ref|YP_005839251.1|	-	0.012	14.7	0.0	0.027	13.4	0.0	1.5	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_19	PF13245.1	gi|385802851|ref|YP_005839251.1|	-	0.014	15.1	0.0	0.034	13.8	0.0	1.6	1	0	0	1	1	1	0	Part	of	AAA	domain
Mg_chelatase	PF01078.16	gi|385802851|ref|YP_005839251.1|	-	0.022	13.9	0.0	0.048	12.8	0.0	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
RNA_helicase	PF00910.17	gi|385802851|ref|YP_005839251.1|	-	0.03	14.4	0.0	0.067	13.3	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
AAA_17	PF13207.1	gi|385802851|ref|YP_005839251.1|	-	0.047	14.5	0.0	0.2	12.5	0.0	2.1	1	0	0	1	1	1	0	AAA	domain
ATP-synt_ab	PF00006.20	gi|385802851|ref|YP_005839251.1|	-	0.047	13.1	0.0	0.087	12.3	0.0	1.4	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
KaiC	PF06745.8	gi|385802851|ref|YP_005839251.1|	-	0.11	11.5	0.1	0.38	9.8	0.0	1.9	2	0	0	2	2	2	0	KaiC
DUF2075	PF09848.4	gi|385802851|ref|YP_005839251.1|	-	0.14	11.1	0.0	0.32	9.9	0.0	1.6	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
Arch_ATPase	PF01637.13	gi|385802851|ref|YP_005839251.1|	-	0.15	11.7	0.1	9.1	5.8	0.0	2.6	2	1	1	3	3	3	0	Archaeal	ATPase
PQQ_2	PF13360.1	gi|385802852|ref|YP_005839252.1|	-	5.1e-09	35.9	4.2	2.1e-05	24.1	0.1	3.4	3	1	1	4	4	4	2	PQQ-like	domain
PQQ	PF01011.16	gi|385802852|ref|YP_005839252.1|	-	0.013	14.9	0.0	0.091	12.3	0.0	2.6	2	1	1	3	3	3	0	PQQ	enzyme	repeat
PQQ_3	PF13570.1	gi|385802852|ref|YP_005839252.1|	-	0.29	11.4	5.4	1.3	9.3	0.1	3.9	3	1	0	3	3	3	0	PQQ-like	domain
NPCBM_assoc	PF10633.4	gi|385802853|ref|YP_005839253.1|	-	0.00041	20.3	7.8	0.22	11.5	0.1	4.5	2	1	1	3	3	3	2	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
DUF3366	PF11846.3	gi|385802853|ref|YP_005839253.1|	-	0.44	10.3	7.5	1.2	9.0	5.2	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3366)
Cadherin-like	PF12733.2	gi|385802853|ref|YP_005839253.1|	-	0.77	10.0	20.1	2.9	8.2	0.2	5.1	4	2	0	4	4	4	0	Cadherin-like	beta	sandwich	domain
DUF2530	PF10745.4	gi|385802854|ref|YP_005839254.1|	-	0.012	15.6	0.7	0.067	13.1	0.2	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2530)
CarboxypepD_reg	PF13620.1	gi|385802855|ref|YP_005839255.1|	-	1.3e-05	25.1	2.9	9.2e-05	22.4	0.3	6.5	8	0	0	8	8	8	3	Carboxypeptidase	regulatory-like	domain
Cu-oxidase	PF00394.17	gi|385802855|ref|YP_005839255.1|	-	0.001	19.0	2.1	0.021	14.7	0.2	3.0	2	0	0	2	2	2	1	Multicopper	oxidase
Wzy_C	PF04932.10	gi|385802855|ref|YP_005839255.1|	-	0.03	14.1	6.7	0.4	10.4	3.3	3.0	2	1	0	2	2	2	0	O-Antigen	ligase
zf-UDP	PF14569.1	gi|385802855|ref|YP_005839255.1|	-	0.092	12.5	0.1	0.29	10.8	0.1	1.9	1	0	0	1	1	1	0	Zinc-binding	RING-finger
Y_Y_Y	PF07495.8	gi|385802855|ref|YP_005839255.1|	-	0.13	11.9	4.2	6.4	6.6	0.0	3.4	4	0	0	4	4	4	0	Y_Y_Y	domain
Tubulin	PF00091.20	gi|385802856|ref|YP_005839256.1|	-	1.8e-08	34.4	0.0	2.8e-08	33.8	0.0	1.3	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
Methyltransf_10	PF05971.7	gi|385802857|ref|YP_005839257.1|	-	0.049	12.7	0.0	0.086	11.9	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF890)
DUF4191	PF13829.1	gi|385802857|ref|YP_005839257.1|	-	0.15	11.1	0.3	4.1	6.4	0.5	2.5	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4191)
NPV_P10	PF05531.7	gi|385802857|ref|YP_005839257.1|	-	0.56	10.4	9.7	0.98	9.7	0.9	4.4	2	1	2	4	4	4	0	Nucleopolyhedrovirus	P10	protein
APG6	PF04111.7	gi|385802858|ref|YP_005839258.1|	-	0.013	14.5	2.6	0.019	14.0	1.8	1.1	1	0	0	1	1	1	0	Autophagy	protein	Apg6
TMP_2	PF06791.8	gi|385802858|ref|YP_005839258.1|	-	0.26	10.8	7.8	0.81	9.2	5.4	1.8	1	1	0	1	1	1	0	Prophage	tail	length	tape	measure	protein
Spc7	PF08317.6	gi|385802858|ref|YP_005839258.1|	-	0.41	9.2	4.8	0.62	8.6	3.3	1.2	1	0	0	1	1	1	0	Spc7	kinetochore	protein
Prefoldin_2	PF01920.15	gi|385802858|ref|YP_005839258.1|	-	0.87	9.3	5.3	7.5	6.3	0.8	2.3	2	0	0	2	2	2	0	Prefoldin	subunit
SlyX	PF04102.7	gi|385802858|ref|YP_005839258.1|	-	6.1	7.2	6.1	29	5.1	0.3	2.5	2	0	0	2	2	2	0	SlyX
O-antigen_lig	PF13425.1	gi|385802859|ref|YP_005839259.1|	-	0.031	14.2	0.1	0.033	14.1	0.0	1.1	1	0	0	1	1	1	0	O-antigen	ligase	like	membrane	protein
DUF4064	PF13273.1	gi|385802859|ref|YP_005839259.1|	-	0.1	12.7	4.0	0.2	11.7	2.8	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4064)
Coa1	PF08695.5	gi|385802859|ref|YP_005839259.1|	-	0.12	11.9	0.9	0.22	11.0	0.6	1.6	1	1	0	1	1	1	0	Cytochrome	oxidase	complex	assembly	protein	1
Romo1	PF10247.4	gi|385802859|ref|YP_005839259.1|	-	0.26	11.4	4.5	1	9.5	0.4	2.2	2	0	0	2	2	2	0	Reactive	mitochondrial	oxygen	species	modulator	1
Tubulin	PF00091.20	gi|385802860|ref|YP_005839260.1|	-	1.7e-10	41.0	0.0	1.6e-08	34.6	0.0	2.7	2	1	0	2	2	2	2	Tubulin/FtsZ	family,	GTPase	domain
Tubulin_2	PF13809.1	gi|385802860|ref|YP_005839260.1|	-	0.017	14.0	0.0	0.027	13.4	0.0	1.4	1	0	0	1	1	1	0	Tubulin	like
DUF935	PF06074.7	gi|385802861|ref|YP_005839261.1|	-	0.2	10.3	10.0	0.01	14.5	2.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF935)
Tubulin	PF00091.20	gi|385802862|ref|YP_005839262.1|	-	3.6e-16	59.6	1.5	4.9e-15	55.9	0.0	2.8	2	1	0	2	2	2	1	Tubulin/FtsZ	family,	GTPase	domain
Baculo_PEP_C	PF04513.7	gi|385802863|ref|YP_005839263.1|	-	0.022	14.6	7.2	0.067	13.0	0.2	2.9	2	1	1	3	3	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
AAA_13	PF13166.1	gi|385802863|ref|YP_005839263.1|	-	0.048	12.1	2.4	0.071	11.5	1.7	1.2	1	0	0	1	1	1	0	AAA	domain
DUF4455	PF14643.1	gi|385802863|ref|YP_005839263.1|	-	0.58	8.7	8.2	0.25	9.9	0.2	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4455)
WXG100	PF06013.7	gi|385802863|ref|YP_005839263.1|	-	1.6	8.7	8.5	0.43	10.5	0.3	3.5	2	1	0	3	3	3	0	Proteins	of	100	residues	with	WXG
Prefoldin_2	PF01920.15	gi|385802863|ref|YP_005839263.1|	-	5.8	6.7	7.0	4	7.2	0.2	3.3	3	1	0	3	3	3	0	Prefoldin	subunit
MutS_V	PF00488.16	gi|385802864|ref|YP_005839264.1|	-	7.1e-95	316.8	0.0	1.2e-94	316.1	0.0	1.3	1	0	0	1	1	1	1	MutS	domain	V
MutS_III	PF05192.13	gi|385802864|ref|YP_005839264.1|	-	1.1e-40	139.5	3.4	7.4e-40	136.9	2.3	2.2	2	1	0	2	2	2	1	MutS	domain	III
MutS_I	PF01624.15	gi|385802864|ref|YP_005839264.1|	-	5.1e-26	90.9	0.0	1.1e-25	89.8	0.0	1.6	1	0	0	1	1	1	1	MutS	domain	I
MutS_IV	PF05190.13	gi|385802864|ref|YP_005839264.1|	-	1.8e-23	82.5	1.9	3.9e-23	81.4	1.3	1.6	1	0	0	1	1	1	1	MutS	family	domain	IV
MutS_II	PF05188.12	gi|385802864|ref|YP_005839264.1|	-	1.7e-18	66.9	0.5	7.4e-18	64.9	0.0	2.3	3	0	0	3	3	3	1	MutS	domain	II
AAA_29	PF13555.1	gi|385802864|ref|YP_005839264.1|	-	0.0055	16.1	0.0	0.012	15.1	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_14	PF13173.1	gi|385802864|ref|YP_005839264.1|	-	0.11	12.3	0.0	0.49	10.2	0.0	2.1	1	1	0	1	1	1	0	AAA	domain
adh_short	PF00106.20	gi|385802865|ref|YP_005839265.1|	-	9.8e-22	77.6	1.1	1.3e-21	77.2	0.8	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|385802865|ref|YP_005839265.1|	-	4.9e-15	55.9	0.0	1.4e-13	51.2	0.0	2.0	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|385802865|ref|YP_005839265.1|	-	1.3e-09	37.9	1.0	1.8e-09	37.5	0.7	1.2	1	0	0	1	1	1	1	KR	domain
NAD_binding_10	PF13460.1	gi|385802865|ref|YP_005839265.1|	-	0.0011	18.9	0.3	0.0022	18.0	0.2	1.4	1	1	0	1	1	1	1	NADH(P)-binding
Epimerase	PF01370.16	gi|385802865|ref|YP_005839265.1|	-	0.0028	17.1	0.0	0.0042	16.5	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
THF_DHG_CYH_C	PF02882.14	gi|385802865|ref|YP_005839265.1|	-	0.061	12.3	0.3	0.22	10.5	0.1	1.9	1	1	1	2	2	2	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
UPF0257	PF06788.8	gi|385802865|ref|YP_005839265.1|	-	0.1	11.7	0.1	0.31	10.2	0.0	1.7	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0257)
AstE_AspA	PF04952.9	gi|385802866|ref|YP_005839266.1|	-	2.5e-12	46.2	0.0	4e-12	45.6	0.0	1.3	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
EamA	PF00892.15	gi|385802867|ref|YP_005839267.1|	-	1.2e-17	64.1	17.1	2.9e-12	46.7	1.9	2.4	2	1	0	2	2	2	2	EamA-like	transporter	family
EmrE	PF13536.1	gi|385802867|ref|YP_005839267.1|	-	1.1e-08	35.2	18.9	4.9e-06	26.7	2.3	2.8	1	1	0	2	2	2	2	Multidrug	resistance	efflux	transporter
UPF0546	PF10639.4	gi|385802867|ref|YP_005839267.1|	-	0.00014	21.6	0.4	0.00014	21.6	0.3	2.8	3	0	0	3	3	3	1	Uncharacterised	protein	family	UPF0546
ATP-grasp	PF02222.17	gi|385802868|ref|YP_005839268.1|	-	1.6e-56	190.3	0.0	2.8e-56	189.5	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|385802868|ref|YP_005839268.1|	-	3.1e-19	69.4	0.0	5.1e-19	68.7	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.8	gi|385802868|ref|YP_005839268.1|	-	3.8e-10	39.5	0.1	5.8e-09	35.6	0.0	2.4	2	1	0	2	2	2	1	D-ala	D-ala	ligase	C-terminus
CPSase_L_D2	PF02786.12	gi|385802868|ref|YP_005839268.1|	-	3.6e-09	36.2	0.0	1.5e-08	34.2	0.0	1.9	1	1	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATPgrasp_Ter	PF15632.1	gi|385802868|ref|YP_005839268.1|	-	1.2e-07	30.7	0.0	5.4e-06	25.3	0.0	2.0	2	0	0	2	2	2	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
GARS_A	PF01071.14	gi|385802868|ref|YP_005839268.1|	-	3.5e-06	26.7	0.0	5.7e-06	26.0	0.0	1.4	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATP-grasp_3	PF02655.9	gi|385802868|ref|YP_005839268.1|	-	0.00015	21.6	0.0	0.00031	20.6	0.0	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
RimK	PF08443.6	gi|385802868|ref|YP_005839268.1|	-	0.00028	20.4	0.0	0.00092	18.7	0.0	1.8	1	1	0	1	1	1	1	RimK-like	ATP-grasp	domain
2-Hacid_dh_C	PF02826.14	gi|385802868|ref|YP_005839268.1|	-	0.0021	17.2	0.0	0.0042	16.2	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
CPSase_L_chain	PF00289.17	gi|385802868|ref|YP_005839268.1|	-	0.0024	17.9	0.1	0.0049	16.9	0.1	1.6	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
RmlD_sub_bind	PF04321.12	gi|385802868|ref|YP_005839268.1|	-	0.015	14.1	0.1	0.031	13.1	0.1	1.6	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
Epimerase	PF01370.16	gi|385802868|ref|YP_005839268.1|	-	0.022	14.1	0.1	0.051	12.9	0.0	1.5	1	1	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
DUF3182	PF11379.3	gi|385802868|ref|YP_005839268.1|	-	0.036	12.7	0.0	0.059	12.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3182)
Inositol_P	PF00459.20	gi|385802869|ref|YP_005839269.1|	-	6.1e-57	192.9	0.0	9.1e-57	192.4	0.0	1.2	1	0	0	1	1	1	1	Inositol	monophosphatase	family
NAD_kinase	PF01513.16	gi|385802869|ref|YP_005839269.1|	-	6.8e-34	116.9	0.2	1e-33	116.3	0.1	1.2	1	0	0	1	1	1	1	ATP-NAD	kinase
FBPase	PF00316.15	gi|385802869|ref|YP_005839269.1|	-	0.00017	20.5	0.0	0.001	18.0	0.0	1.9	2	0	0	2	2	2	1	Fructose-1-6-bisphosphatase
Ribonuc_L-PSP	PF01042.16	gi|385802870|ref|YP_005839270.1|	-	4.8e-26	90.9	0.1	5.3e-26	90.7	0.1	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
SBBP	PF06739.6	gi|385802870|ref|YP_005839270.1|	-	1.6	8.5	4.3	1.6	8.6	1.1	2.4	2	1	1	3	3	3	0	Beta-propeller	repeat
MFS_1	PF07690.11	gi|385802871|ref|YP_005839271.1|	-	2.7e-42	144.7	70.5	9.5e-40	136.3	32.1	1.7	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
OATP	PF03137.15	gi|385802871|ref|YP_005839271.1|	-	0.0024	16.0	2.6	0.0044	15.1	1.8	1.5	1	0	0	1	1	1	1	Organic	Anion	Transporter	Polypeptide	(OATP)	family
Sugar_tr	PF00083.19	gi|385802871|ref|YP_005839271.1|	-	0.0035	15.9	38.5	0.037	12.6	8.4	2.3	2	1	0	2	2	2	2	Sugar	(and	other)	transporter
MFS_1_like	PF12832.2	gi|385802871|ref|YP_005839271.1|	-	0.22	11.3	10.6	3.6	7.4	0.7	3.8	3	1	0	3	3	3	0	MFS_1	like	family
ASC	PF00858.19	gi|385802871|ref|YP_005839271.1|	-	0.24	10.0	2.1	0.45	9.0	1.4	1.3	1	0	0	1	1	1	0	Amiloride-sensitive	sodium	channel
ABC_tran	PF00005.22	gi|385802872|ref|YP_005839272.1|	-	6.8e-31	107.3	0.0	1.1e-30	106.7	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385802872|ref|YP_005839272.1|	-	4.1e-13	49.9	0.0	3.2e-06	27.3	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|385802872|ref|YP_005839272.1|	-	1.3e-08	34.3	0.2	4.2e-06	26.1	0.1	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.1	gi|385802872|ref|YP_005839272.1|	-	2.4e-05	24.4	0.0	8e-05	22.7	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.1	gi|385802872|ref|YP_005839272.1|	-	2.6e-05	23.4	0.0	0.028	13.4	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_16	PF13191.1	gi|385802872|ref|YP_005839272.1|	-	7.4e-05	22.8	0.7	0.0071	16.3	0.0	2.2	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|385802872|ref|YP_005839272.1|	-	0.00014	21.3	0.0	0.00041	19.8	0.0	1.7	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|385802872|ref|YP_005839272.1|	-	0.00066	18.8	0.0	0.0012	18.0	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_19	PF13245.1	gi|385802872|ref|YP_005839272.1|	-	0.0034	17.1	0.0	3.6	7.4	0.0	2.5	2	0	0	2	2	2	2	Part	of	AAA	domain
AAA_23	PF13476.1	gi|385802872|ref|YP_005839272.1|	-	0.0044	17.3	0.0	0.0099	16.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
Rad17	PF03215.10	gi|385802872|ref|YP_005839272.1|	-	0.0065	15.2	0.0	0.0092	14.7	0.0	1.2	1	0	0	1	1	1	1	Rad17	cell	cycle	checkpoint	protein
AAA_25	PF13481.1	gi|385802872|ref|YP_005839272.1|	-	0.0072	15.7	0.1	0.041	13.2	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_33	PF13671.1	gi|385802872|ref|YP_005839272.1|	-	0.0082	16.0	0.0	0.018	14.9	0.0	1.7	2	1	0	2	2	2	1	AAA	domain
AAA_10	PF12846.2	gi|385802872|ref|YP_005839272.1|	-	0.014	14.8	0.0	0.029	13.8	0.0	1.7	1	1	0	1	1	1	0	AAA-like	domain
DeoRC	PF00455.17	gi|385802872|ref|YP_005839272.1|	-	0.016	14.8	0.0	0.026	14.1	0.0	1.3	1	0	0	1	1	1	0	DeoR	C	terminal	sensor	domain
AAA_17	PF13207.1	gi|385802872|ref|YP_005839272.1|	-	0.018	15.8	0.2	0.077	13.8	0.2	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.1	gi|385802872|ref|YP_005839272.1|	-	0.023	15.0	0.0	0.048	13.9	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.18	gi|385802872|ref|YP_005839272.1|	-	0.12	12.3	0.0	0.33	10.9	0.0	1.9	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_13	PF13166.1	gi|385802872|ref|YP_005839272.1|	-	0.12	10.8	0.0	8	4.7	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
Adeno_IVa2	PF02456.10	gi|385802872|ref|YP_005839272.1|	-	0.15	10.6	0.0	0.8	8.2	0.0	1.9	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
BPD_transp_1	PF00528.17	gi|385802873|ref|YP_005839273.1|	-	9.3e-22	77.4	13.4	9.3e-22	77.4	9.3	5.0	1	1	4	6	6	6	2	Binding-protein-dependent	transport	system	inner	membrane	component
CRPA	PF05745.6	gi|385802873|ref|YP_005839273.1|	-	7.8	6.2	11.6	0.066	13.0	1.3	2.5	2	0	0	2	2	2	0	Chlamydia	15	kDa	cysteine-rich	outer	membrane	protein	(CRPA)
BPD_transp_1	PF00528.17	gi|385802874|ref|YP_005839274.1|	-	6.1e-16	58.4	16.1	6.1e-16	58.4	11.2	2.7	1	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF4022	PF13214.1	gi|385802874|ref|YP_005839274.1|	-	3.6	7.7	11.4	1	9.5	4.7	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4022)
PBP_like_2	PF12849.2	gi|385802875|ref|YP_005839275.1|	-	1.1e-34	120.2	4.2	2e-34	119.3	2.8	1.4	1	1	0	1	1	1	1	PBP	superfamily	domain
PBP_like	PF12727.2	gi|385802875|ref|YP_005839275.1|	-	4.1e-16	58.5	0.1	6.4e-16	57.8	0.1	1.2	1	0	0	1	1	1	1	PBP	superfamily	domain
TAT_signal	PF10518.4	gi|385802875|ref|YP_005839275.1|	-	0.0015	18.3	0.9	0.0033	17.2	0.6	1.6	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
LPAM_1	PF08139.7	gi|385802875|ref|YP_005839275.1|	-	0.37	11.0	1.7	0.82	9.9	1.2	1.6	1	0	0	1	1	1	0	Prokaryotic	membrane	lipoprotein	lipid	attachment	site
Snapin_Pallidin	PF14712.1	gi|385802876|ref|YP_005839276.1|	-	0.033	14.4	0.1	8.1	6.8	0.0	2.7	2	2	0	2	2	2	0	Snapin/Pallidin
Fib_alpha	PF08702.5	gi|385802876|ref|YP_005839276.1|	-	0.06	13.4	0.0	0.5	10.4	0.0	2.2	2	1	1	3	3	3	0	Fibrinogen	alpha/beta	chain	family
GCIP	PF13324.1	gi|385802876|ref|YP_005839276.1|	-	0.067	12.4	0.8	1.5	7.9	0.0	2.3	2	0	0	2	2	2	0	Grap2	and	cyclin-D-interacting
IncA	PF04156.9	gi|385802876|ref|YP_005839276.1|	-	0.13	11.8	0.1	4.2	6.9	0.1	2.5	1	1	0	1	1	1	0	IncA	protein
HTH_Tnp_ISL3	PF13542.1	gi|385802876|ref|YP_005839276.1|	-	0.15	11.2	1.1	1.7	7.9	0.0	3.2	4	0	0	4	4	4	0	Helix-turn-helix	domain	of	transposase	family	ISL3
PSK_trans_fac	PF07704.6	gi|385802876|ref|YP_005839276.1|	-	1.6	9.4	5.7	5.3	7.7	2.8	2.8	2	1	0	2	2	2	0	Rv0623-like	transcription	factor
Pribosyltran	PF00156.22	gi|385802878|ref|YP_005839278.1|	-	5.1e-23	81.1	0.4	7e-23	80.7	0.3	1.1	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.1	gi|385802878|ref|YP_005839278.1|	-	0.012	14.8	0.1	0.021	14.0	0.1	1.4	1	0	0	1	1	1	0	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.1	gi|385802878|ref|YP_005839278.1|	-	0.017	14.4	0.1	0.026	13.8	0.1	1.5	1	0	0	1	1	1	0	Phosphoribosyl	transferase
DUF2114	PF09887.4	gi|385802878|ref|YP_005839278.1|	-	0.035	12.4	0.0	0.041	12.2	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2114)
PfkB	PF00294.19	gi|385802879|ref|YP_005839279.1|	-	3.4e-30	105.2	0.1	2.1e-18	66.5	0.0	2.3	3	0	0	3	3	3	2	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.7	gi|385802879|ref|YP_005839279.1|	-	0.00019	20.7	0.1	0.00098	18.3	0.0	1.9	2	0	0	2	2	2	1	Phosphomethylpyrimidine	kinase
Carb_kinase	PF01256.12	gi|385802879|ref|YP_005839279.1|	-	0.045	13.0	0.1	0.11	11.8	0.0	1.6	2	0	0	2	2	2	0	Carbohydrate	kinase
CopD	PF05425.8	gi|385802881|ref|YP_005839281.1|	-	0.019	15.1	1.2	0.031	14.4	0.4	1.7	2	0	0	2	2	2	0	Copper	resistance	protein	D
DUF4191	PF13829.1	gi|385802881|ref|YP_005839281.1|	-	0.14	11.2	0.5	0.17	10.9	0.3	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
ABC_tran	PF00005.22	gi|385802882|ref|YP_005839282.1|	-	2.9e-33	115.0	0.0	4.8e-33	114.3	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|385802882|ref|YP_005839282.1|	-	1.9e-17	63.3	0.7	3.9e-17	62.3	0.5	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|385802882|ref|YP_005839282.1|	-	1.1e-07	32.1	0.1	0.00012	22.1	0.0	2.2	1	1	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|385802882|ref|YP_005839282.1|	-	0.00044	20.2	0.4	0.0044	17.0	0.1	2.2	2	0	0	2	2	2	1	AAA	ATPase	domain
SMC_N	PF02463.14	gi|385802882|ref|YP_005839282.1|	-	0.0018	17.5	0.0	0.0057	15.9	0.0	1.7	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
FtsK_SpoIIIE	PF01580.13	gi|385802882|ref|YP_005839282.1|	-	0.0021	17.5	0.0	0.0039	16.6	0.0	1.4	1	0	0	1	1	1	1	FtsK/SpoIIIE	family
AAA_22	PF13401.1	gi|385802882|ref|YP_005839282.1|	-	0.0022	18.1	0.2	0.01	15.9	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|385802882|ref|YP_005839282.1|	-	0.0094	15.4	0.5	0.021	14.3	0.3	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_10	PF12846.2	gi|385802882|ref|YP_005839282.1|	-	0.017	14.6	0.0	0.5	9.7	0.0	2.5	2	1	1	3	3	3	0	AAA-like	domain
AAA_18	PF13238.1	gi|385802882|ref|YP_005839282.1|	-	0.031	14.5	1.1	0.062	13.6	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
Sigma54_activat	PF00158.21	gi|385802882|ref|YP_005839282.1|	-	0.034	13.6	0.1	8.3	5.8	0.0	2.2	2	0	0	2	2	2	0	Sigma-54	interaction	domain
DUF258	PF03193.11	gi|385802882|ref|YP_005839282.1|	-	0.042	13.0	0.0	0.073	12.2	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_13	PF13166.1	gi|385802882|ref|YP_005839282.1|	-	0.043	12.3	0.2	6.5	5.0	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.1	gi|385802882|ref|YP_005839282.1|	-	0.097	12.5	0.0	0.2	11.5	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.1	gi|385802882|ref|YP_005839282.1|	-	0.13	11.6	0.5	0.51	9.7	0.3	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|385802882|ref|YP_005839282.1|	-	0.13	11.9	0.1	3.3	7.4	0.2	2.4	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
NACHT	PF05729.7	gi|385802882|ref|YP_005839282.1|	-	0.15	11.7	0.7	0.37	10.4	0.4	1.8	2	0	0	2	2	2	0	NACHT	domain
UPF0079	PF02367.12	gi|385802882|ref|YP_005839282.1|	-	0.16	11.5	0.3	0.34	10.5	0.2	1.5	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
ABC_tran	PF00005.22	gi|385802883|ref|YP_005839283.1|	-	1.3e-27	96.7	0.0	2e-27	96.1	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|385802883|ref|YP_005839283.1|	-	1.5e-20	73.2	0.3	5.3e-20	71.5	0.2	2.0	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|385802883|ref|YP_005839283.1|	-	2.6e-08	34.1	0.2	5.7e-06	26.5	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|385802883|ref|YP_005839283.1|	-	0.00014	21.1	0.0	0.00035	19.8	0.0	1.6	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_10	PF12846.2	gi|385802883|ref|YP_005839283.1|	-	0.00092	18.7	0.1	0.015	14.7	0.0	2.1	1	1	1	2	2	2	1	AAA-like	domain
AAA_16	PF13191.1	gi|385802883|ref|YP_005839283.1|	-	0.0024	17.8	0.0	0.0047	16.9	0.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|385802883|ref|YP_005839283.1|	-	0.0045	16.4	0.0	0.0096	15.4	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.1	gi|385802883|ref|YP_005839283.1|	-	0.016	15.3	0.1	0.73	9.9	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_15	PF13175.1	gi|385802883|ref|YP_005839283.1|	-	0.023	13.7	0.1	0.094	11.7	0.0	1.8	2	0	0	2	2	2	0	AAA	ATPase	domain
ATP-synt_ab	PF00006.20	gi|385802883|ref|YP_005839283.1|	-	0.036	13.5	0.0	0.063	12.7	0.0	1.4	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
DUF87	PF01935.12	gi|385802883|ref|YP_005839283.1|	-	0.058	13.1	0.0	0.1	12.3	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF87
Sigma54_activat	PF00158.21	gi|385802883|ref|YP_005839283.1|	-	0.13	11.7	0.1	0.5	9.8	0.0	1.8	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AIG1	PF04548.11	gi|385802883|ref|YP_005839283.1|	-	0.27	10.3	1.4	1.2	8.2	0.3	2.4	3	0	0	3	3	3	0	AIG1	family
BPD_transp_1	PF00528.17	gi|385802884|ref|YP_005839284.1|	-	1.2e-19	70.5	14.8	1.2e-19	70.5	10.3	2.7	3	0	0	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.2	gi|385802884|ref|YP_005839284.1|	-	4.5e-06	25.9	1.5	0.00014	21.1	0.0	3.5	2	1	1	3	3	3	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Exo_endo_phos_2	PF14529.1	gi|385802884|ref|YP_005839284.1|	-	0.06	12.9	0.0	0.1	12.1	0.0	1.3	1	0	0	1	1	1	0	Endonuclease-reverse	transcriptase
FliP	PF00813.15	gi|385802884|ref|YP_005839284.1|	-	0.28	10.8	3.5	2.3	7.8	0.3	2.9	3	0	0	3	3	3	0	FliP	family
BPD_transp_1	PF00528.17	gi|385802885|ref|YP_005839285.1|	-	1.8e-29	102.6	16.1	1.8e-29	102.6	11.1	2.6	2	2	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_5	PF00496.17	gi|385802886|ref|YP_005839286.1|	-	5.9e-60	203.0	7.2	1.1e-47	162.6	1.4	2.2	2	0	0	2	2	2	2	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.4	gi|385802886|ref|YP_005839286.1|	-	3.3e-05	23.5	1.1	6.1e-05	22.7	0.8	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.4	gi|385802886|ref|YP_005839286.1|	-	0.0081	15.3	2.0	0.015	14.4	1.4	1.4	1	0	0	1	1	1	1	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
MFS_1	PF07690.11	gi|385802887|ref|YP_005839287.1|	-	6e-42	143.6	60.7	1.3e-30	106.3	21.0	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
G_glu_transpept	PF01019.16	gi|385802888|ref|YP_005839288.1|	-	5.1e-149	497.0	0.0	5.8e-149	496.8	0.0	1.0	1	0	0	1	1	1	1	Gamma-glutamyltranspeptidase
UPF0104	PF03706.8	gi|385802889|ref|YP_005839289.1|	-	8.5e-35	120.4	27.5	1.3e-34	119.8	19.1	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0104)
Glycos_transf_2	PF00535.21	gi|385802889|ref|YP_005839289.1|	-	2.8e-26	92.1	0.0	4.3e-26	91.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|385802889|ref|YP_005839289.1|	-	2.5e-10	40.5	0.1	5.6e-10	39.3	0.1	1.5	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.4	gi|385802889|ref|YP_005839289.1|	-	1.7e-05	24.0	0.0	2.4e-05	23.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.1	gi|385802889|ref|YP_005839289.1|	-	0.012	15.9	0.0	0.023	14.9	0.0	1.5	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
Glyco_trans_2_3	PF13632.1	gi|385802889|ref|YP_005839289.1|	-	1	8.9	5.5	0.21	11.2	0.9	1.9	2	0	0	2	2	2	0	Glycosyl	transferase	family	group	2
NTR2	PF15458.1	gi|385802890|ref|YP_005839290.1|	-	0.033	13.4	0.4	0.044	13.0	0.3	1.2	1	0	0	1	1	1	0	Nineteen	complex-related	protein	2
RepL	PF05732.6	gi|385802890|ref|YP_005839290.1|	-	0.049	12.8	0.1	0.066	12.4	0.1	1.2	1	0	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
HTH_6	PF01418.12	gi|385802890|ref|YP_005839290.1|	-	0.061	13.0	0.1	0.099	12.3	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain,	rpiR	family
RseA_C	PF03873.8	gi|385802890|ref|YP_005839290.1|	-	0.084	12.7	0.8	0.14	12.0	0.6	1.4	1	0	0	1	1	1	0	Anti	sigma-E	protein	RseA,	C-terminal	domain
HTH_24	PF13412.1	gi|385802891|ref|YP_005839291.1|	-	1.3e-09	37.2	0.0	6e-06	25.5	0.0	2.5	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
HTH_34	PF13601.1	gi|385802891|ref|YP_005839291.1|	-	3.9e-08	33.2	0.0	0.012	15.6	0.0	2.2	2	0	0	2	2	2	2	Winged	helix	DNA-binding	domain
HTH_20	PF12840.2	gi|385802891|ref|YP_005839291.1|	-	5.4e-08	32.5	0.0	0.0051	16.5	0.0	2.3	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|385802891|ref|YP_005839291.1|	-	9e-08	31.6	0.0	0.0014	18.2	0.0	2.2	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.2	gi|385802891|ref|YP_005839291.1|	-	2.4e-06	27.0	0.1	8.2e-05	22.1	0.0	2.3	2	0	0	2	2	2	1	MarR	family
MarR	PF01047.17	gi|385802891|ref|YP_005839291.1|	-	1.7e-05	24.3	0.0	7.4e-05	22.3	0.0	2.0	2	0	0	2	2	2	1	MarR	family
TrmB	PF01978.14	gi|385802891|ref|YP_005839291.1|	-	4.6e-05	23.0	0.0	0.0032	17.1	0.0	2.2	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.7	gi|385802891|ref|YP_005839291.1|	-	0.00087	18.8	0.1	0.0018	17.9	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
Fe_dep_repress	PF01325.14	gi|385802891|ref|YP_005839291.1|	-	0.0022	17.8	0.0	0.0049	16.7	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
RPA_C	PF08784.6	gi|385802891|ref|YP_005839291.1|	-	0.0096	16.3	0.5	0.046	14.1	0.0	2.0	2	0	0	2	2	2	1	Replication	protein	A	C	terminal
HTH_AsnC-type	PF13404.1	gi|385802891|ref|YP_005839291.1|	-	0.01	15.3	0.1	0.029	13.9	0.1	1.7	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|385802891|ref|YP_005839291.1|	-	0.01	15.5	0.0	0.023	14.4	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
DUF2250	PF10007.4	gi|385802891|ref|YP_005839291.1|	-	0.015	15.1	0.0	0.13	12.2	0.0	2.3	2	1	1	3	3	3	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
EAP30	PF04157.11	gi|385802891|ref|YP_005839291.1|	-	0.021	13.9	0.0	0.064	12.4	0.0	1.7	2	0	0	2	2	2	0	EAP30/Vps36	family
RP-C	PF03428.8	gi|385802891|ref|YP_005839291.1|	-	0.12	11.8	0.2	6.7	6.1	0.1	2.2	2	0	0	2	2	2	0	Replication	protein	C	N-terminal	domain
Band_7	PF01145.20	gi|385802892|ref|YP_005839292.1|	-	8.9e-39	133.2	3.1	8.9e-39	133.2	2.1	2.4	2	1	1	3	3	3	1	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.1	gi|385802892|ref|YP_005839292.1|	-	3e-05	23.6	0.7	6.5e-05	22.5	0.2	1.8	2	0	0	2	2	2	1	SPFH	domain-Band	7	family
DEPP	PF15343.1	gi|385802892|ref|YP_005839292.1|	-	0.92	9.0	5.0	5.8	6.4	0.0	2.2	2	0	0	2	2	2	0	Decidual	protein	induced	by	progesterone	family
ABC_tran	PF00005.22	gi|385802893|ref|YP_005839293.1|	-	5.8e-27	94.6	0.0	9.9e-27	93.9	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385802893|ref|YP_005839293.1|	-	2e-16	60.8	0.0	4.5e-10	39.9	0.0	2.2	1	1	1	2	2	2	2	AAA	domain
AAA_23	PF13476.1	gi|385802893|ref|YP_005839293.1|	-	0.00046	20.5	0.0	0.00084	19.7	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|385802893|ref|YP_005839293.1|	-	0.00063	19.2	0.2	0.0015	18.0	0.1	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.14	gi|385802893|ref|YP_005839293.1|	-	0.0018	17.5	0.0	0.15	11.2	0.0	2.3	1	1	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_30	PF13604.1	gi|385802893|ref|YP_005839293.1|	-	0.0019	17.8	0.1	0.0089	15.6	0.0	2.1	1	1	1	2	2	2	1	AAA	domain
UPF0079	PF02367.12	gi|385802893|ref|YP_005839293.1|	-	0.004	16.7	0.2	0.0082	15.7	0.1	1.4	1	0	0	1	1	1	1	Uncharacterised	P-loop	hydrolase	UPF0079
MMR_HSR1	PF01926.18	gi|385802893|ref|YP_005839293.1|	-	0.0061	16.5	0.1	0.02	14.8	0.0	1.9	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA	PF00004.24	gi|385802893|ref|YP_005839293.1|	-	0.0082	16.3	0.1	0.026	14.7	0.1	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.1	gi|385802893|ref|YP_005839293.1|	-	0.0082	16.1	0.2	0.028	14.4	0.1	2.0	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_15	PF13175.1	gi|385802893|ref|YP_005839293.1|	-	0.014	14.4	0.0	3.1	6.7	0.0	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
SbcCD_C	PF13558.1	gi|385802893|ref|YP_005839293.1|	-	0.015	15.1	0.0	0.15	11.9	0.0	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
IstB_IS21	PF01695.12	gi|385802893|ref|YP_005839293.1|	-	0.02	14.3	0.0	0.43	9.9	0.0	2.4	2	1	1	3	3	3	0	IstB-like	ATP	binding	protein
AAA_33	PF13671.1	gi|385802893|ref|YP_005839293.1|	-	0.023	14.5	0.5	0.044	13.6	0.3	1.7	1	1	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|385802893|ref|YP_005839293.1|	-	0.035	13.3	0.1	0.06	12.5	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_28	PF13521.1	gi|385802893|ref|YP_005839293.1|	-	0.05	13.5	0.2	0.1	12.5	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
cobW	PF02492.14	gi|385802893|ref|YP_005839293.1|	-	0.083	12.3	0.4	0.17	11.3	0.3	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_22	PF13401.1	gi|385802893|ref|YP_005839293.1|	-	0.092	12.8	0.1	0.18	11.9	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
Miro	PF08477.8	gi|385802893|ref|YP_005839293.1|	-	0.11	13.0	0.1	0.25	11.8	0.0	1.6	1	0	0	1	1	1	0	Miro-like	protein
ABC2_membrane	PF01061.19	gi|385802894|ref|YP_005839294.1|	-	1.7e-20	73.0	17.8	2.6e-20	72.5	12.3	1.2	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.2	gi|385802894|ref|YP_005839294.1|	-	5.3e-08	32.2	15.4	5.3e-08	32.2	10.7	2.0	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|385802894|ref|YP_005839294.1|	-	0.00014	21.0	24.0	0.00021	20.5	16.6	1.3	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.2	gi|385802894|ref|YP_005839294.1|	-	0.0002	20.3	11.5	0.0002	20.3	8.0	1.9	2	0	0	2	2	2	1	ABC-2	family	transporter	protein
OppC_N	PF12911.2	gi|385802894|ref|YP_005839294.1|	-	0.12	11.7	0.4	0.12	11.7	0.3	3.2	4	0	0	4	4	4	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
ABC2_membrane_5	PF13346.1	gi|385802894|ref|YP_005839294.1|	-	0.26	10.5	16.0	1.3	8.2	11.1	2.2	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
Aldolase	PF01081.14	gi|385802895|ref|YP_005839295.1|	-	1.7e-41	141.5	1.2	2e-41	141.3	0.8	1.0	1	0	0	1	1	1	1	KDPG	and	KHG	aldolase
DHO_dh	PF01180.16	gi|385802895|ref|YP_005839295.1|	-	0.0025	16.8	6.2	0.9	8.4	0.5	3.1	2	1	1	3	3	3	3	Dihydroorotate	dehydrogenase
TMP-TENI	PF02581.12	gi|385802895|ref|YP_005839295.1|	-	0.0026	16.9	0.5	0.065	12.3	0.1	2.7	2	2	1	3	3	3	1	Thiamine	monophosphate	synthase/TENI
PcrB	PF01884.12	gi|385802895|ref|YP_005839295.1|	-	0.013	14.7	0.5	0.9	8.7	0.0	3.0	3	1	1	4	4	4	0	PcrB	family
FMN_dh	PF01070.13	gi|385802895|ref|YP_005839295.1|	-	0.019	13.8	0.3	0.28	9.9	0.2	2.1	1	1	0	1	1	1	0	FMN-dependent	dehydrogenase
NMO	PF03060.10	gi|385802895|ref|YP_005839295.1|	-	0.08	12.0	1.6	0.41	9.7	1.1	2.1	1	1	0	1	1	1	0	Nitronate	monooxygenase
bPH_2	PF03703.9	gi|385802896|ref|YP_005839296.1|	-	1.3e-47	159.6	12.9	4.6e-20	71.4	0.5	4.1	4	0	0	4	4	4	3	Bacterial	PH	domain
bPH_4	PF06713.6	gi|385802896|ref|YP_005839296.1|	-	0.0035	17.1	0.0	0.86	9.5	0.0	3.1	3	0	0	3	3	3	1	Bacterial	PH	domain
Coiled-coil_56	PF09813.4	gi|385802896|ref|YP_005839296.1|	-	0.1	12.6	0.1	0.98	9.4	0.0	2.4	2	0	0	2	2	2	0	Coiled-coil	domain-containing	protein	56
bPH_2	PF03703.9	gi|385802897|ref|YP_005839297.1|	-	1.8e-19	69.5	0.3	2.5e-19	69.0	0.2	1.2	1	0	0	1	1	1	1	Bacterial	PH	domain
DUF1469	PF07332.6	gi|385802897|ref|YP_005839297.1|	-	0.28	10.9	3.5	0.5	10.1	2.4	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
CopD	PF05425.8	gi|385802899|ref|YP_005839299.1|	-	1.3e-06	28.5	7.8	1.3e-06	28.5	5.4	1.5	2	0	0	2	2	2	1	Copper	resistance	protein	D
DUF2306	PF10067.4	gi|385802899|ref|YP_005839299.1|	-	7.3	6.7	7.5	1.9	8.6	1.5	2.2	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2306)
DUF2071	PF09844.4	gi|385802900|ref|YP_005839300.1|	-	8e-70	234.6	0.0	9e-70	234.4	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(COG2071)
ADC	PF06314.6	gi|385802900|ref|YP_005839300.1|	-	0.0007	19.0	0.1	0.0014	18.0	0.0	1.4	1	1	1	2	2	2	1	Acetoacetate	decarboxylase	(ADC)
CENP-F_leu_zip	PF10473.4	gi|385802901|ref|YP_005839301.1|	-	0.00013	21.8	2.2	0.00021	21.1	1.1	1.5	1	1	0	1	1	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Apolipoprotein	PF01442.13	gi|385802901|ref|YP_005839301.1|	-	0.0011	18.5	0.3	0.0012	18.3	0.2	1.3	1	0	0	1	1	1	1	Apolipoprotein	A1/A4/E	domain
TBPIP	PF07106.8	gi|385802901|ref|YP_005839301.1|	-	0.018	14.5	0.7	0.027	14.0	0.5	1.3	1	0	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
DASH_Dad2	PF08654.5	gi|385802901|ref|YP_005839301.1|	-	0.022	14.7	2.1	0.022	14.7	1.4	1.9	2	1	0	2	2	2	0	DASH	complex	subunit	Dad2
Spc7	PF08317.6	gi|385802901|ref|YP_005839301.1|	-	0.022	13.4	0.9	0.027	13.1	0.6	1.3	1	0	0	1	1	1	0	Spc7	kinetochore	protein
DUF4164	PF13747.1	gi|385802901|ref|YP_005839301.1|	-	0.024	14.7	2.2	0.024	14.7	1.5	2.0	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4164)
Paxillin	PF03535.8	gi|385802901|ref|YP_005839301.1|	-	0.024	14.4	1.0	0.04	13.7	0.4	1.6	1	1	0	1	1	1	0	Paxillin	family
Cep57_MT_bd	PF06657.8	gi|385802901|ref|YP_005839301.1|	-	0.035	14.0	0.1	0.068	13.1	0.1	1.6	1	0	0	1	1	1	0	Centrosome	microtubule-binding	domain	of	Cep57
GTPase_Cys_C	PF12631.2	gi|385802901|ref|YP_005839301.1|	-	0.047	14.1	1.0	0.098	13.0	0.3	1.9	2	0	0	2	2	2	0	Catalytic	cysteine-containing	C-terminus	of	GTPase,	MnmE
DUF641	PF04859.7	gi|385802901|ref|YP_005839301.1|	-	0.053	13.2	0.1	0.11	12.3	0.1	1.5	1	0	0	1	1	1	0	Plant	protein	of	unknown	function	(DUF641)
BLOC1_2	PF10046.4	gi|385802901|ref|YP_005839301.1|	-	0.061	13.4	1.7	0.15	12.1	1.1	1.7	1	1	0	1	1	1	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Med9	PF07544.8	gi|385802901|ref|YP_005839301.1|	-	0.063	13.0	2.1	0.14	11.9	1.0	1.9	2	0	0	2	2	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Baculo_PEP_C	PF04513.7	gi|385802901|ref|YP_005839301.1|	-	0.067	13.0	1.9	0.13	12.0	0.9	1.9	1	1	1	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
COG2	PF06148.6	gi|385802901|ref|YP_005839301.1|	-	0.074	12.9	1.2	0.18	11.6	0.5	1.8	1	1	0	1	1	1	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
ALIX_LYPXL_bnd	PF13949.1	gi|385802901|ref|YP_005839301.1|	-	0.083	11.8	10.7	0.032	13.1	3.6	2.0	1	1	1	2	2	2	0	ALIX	V-shaped	domain	binding	to	HIV
Fzo_mitofusin	PF04799.8	gi|385802901|ref|YP_005839301.1|	-	0.093	12.1	0.2	0.17	11.2	0.1	1.4	1	0	0	1	1	1	0	fzo-like	conserved	region
Rho_Binding	PF08912.6	gi|385802901|ref|YP_005839301.1|	-	0.096	12.9	0.5	0.19	12.0	0.3	1.5	1	0	0	1	1	1	0	Rho	Binding
NPV_P10	PF05531.7	gi|385802901|ref|YP_005839301.1|	-	0.13	12.5	3.2	0.45	10.8	2.2	2.1	1	1	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
Prefoldin_2	PF01920.15	gi|385802901|ref|YP_005839301.1|	-	0.22	11.2	5.3	0.97	9.2	1.5	2.4	1	1	1	2	2	2	0	Prefoldin	subunit
Reo_sigmaC	PF04582.7	gi|385802901|ref|YP_005839301.1|	-	0.24	10.5	7.7	0.19	10.8	4.4	1.5	1	1	0	1	1	1	0	Reovirus	sigma	C	capsid	protein
SlyX	PF04102.7	gi|385802901|ref|YP_005839301.1|	-	0.31	11.4	4.2	1	9.7	2.0	2.4	1	1	1	2	2	2	0	SlyX
DUF1664	PF07889.7	gi|385802901|ref|YP_005839301.1|	-	0.37	10.5	4.0	1.7	8.4	2.0	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
TMF_DNA_bd	PF12329.3	gi|385802901|ref|YP_005839301.1|	-	0.51	10.1	6.0	0.25	11.1	1.3	2.4	3	0	0	3	3	3	0	TATA	element	modulatory	factor	1	DNA	binding
DUF948	PF06103.6	gi|385802901|ref|YP_005839301.1|	-	0.69	9.8	4.9	1.4	8.7	1.4	2.6	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
FlaC_arch	PF05377.6	gi|385802901|ref|YP_005839301.1|	-	2.2	8.2	9.4	0.92	9.4	1.6	3.3	3	1	1	4	4	4	0	Flagella	accessory	protein	C	(FlaC)
FliD_N	PF02465.13	gi|385802901|ref|YP_005839301.1|	-	4.1	7.8	8.4	1.2	9.5	3.2	1.9	1	1	1	2	2	2	0	Flagellar	hook-associated	protein	2	N-terminus
WW	PF00397.21	gi|385802902|ref|YP_005839302.1|	-	0.075	12.9	0.2	0.13	12.1	0.1	1.4	1	0	0	1	1	1	0	WW	domain
DUF3797	PF12677.2	gi|385802902|ref|YP_005839302.1|	-	0.076	12.6	0.1	0.13	11.9	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3797)
DUF393	PF04134.7	gi|385802902|ref|YP_005839302.1|	-	0.08	14.0	0.1	0.14	13.3	0.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function,	DUF393
SRP19	PF01922.12	gi|385802903|ref|YP_005839303.1|	-	5.5e-26	90.9	0.0	6.1e-26	90.8	0.0	1.0	1	0	0	1	1	1	1	SRP19	protein
PurS	PF02700.9	gi|385802903|ref|YP_005839303.1|	-	0.072	13.0	0.1	0.12	12.3	0.0	1.3	1	0	0	1	1	1	0	Phosphoribosylformylglycinamidine	(FGAM)	synthase
Gar1	PF04410.9	gi|385802904|ref|YP_005839304.1|	-	1.1e-05	24.9	0.0	1.1e-05	24.9	0.0	1.0	1	0	0	1	1	1	1	Gar1/Naf1	RNA	binding	region
DUF1119	PF06550.6	gi|385802905|ref|YP_005839305.1|	-	1e-82	277.5	21.4	1.9e-82	276.5	14.8	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1119)
Peptidase_A22B	PF04258.8	gi|385802905|ref|YP_005839305.1|	-	9e-05	22.0	8.7	0.0029	17.0	0.5	3.0	2	1	0	3	3	3	2	Signal	peptide	peptidase
Presenilin	PF01080.12	gi|385802905|ref|YP_005839305.1|	-	0.023	13.5	6.6	0.11	11.2	1.2	2.5	2	2	0	2	2	2	0	Presenilin
SpoIIIAH	PF12685.2	gi|385802905|ref|YP_005839305.1|	-	0.081	12.4	0.0	0.13	11.6	0.0	1.3	1	0	0	1	1	1	0	SpoIIIAH-like	protein
NYN	PF01936.13	gi|385802906|ref|YP_005839306.1|	-	3.2e-37	128.0	0.1	3.9e-37	127.7	0.0	1.0	1	0	0	1	1	1	1	NYN	domain
DUF2529	PF10740.4	gi|385802906|ref|YP_005839306.1|	-	0.048	13.0	0.1	0.12	11.7	0.0	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2529)
FMO-like	PF00743.14	gi|385802906|ref|YP_005839306.1|	-	0.11	10.6	0.0	0.14	10.3	0.0	1.1	1	0	0	1	1	1	0	Flavin-binding	monooxygenase-like
DHDPS	PF00701.17	gi|385802907|ref|YP_005839307.1|	-	1.2e-89	299.7	0.0	1.5e-89	299.4	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
PEP_mutase	PF13714.1	gi|385802907|ref|YP_005839307.1|	-	0.00079	18.7	0.0	0.0011	18.2	0.0	1.2	1	0	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
ThiG	PF05690.9	gi|385802907|ref|YP_005839307.1|	-	0.0046	16.0	0.1	0.0079	15.3	0.0	1.3	1	0	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
Peripla_BP_1	PF00532.16	gi|385802907|ref|YP_005839307.1|	-	0.071	12.3	0.1	0.53	9.4	0.0	2.0	2	0	0	2	2	2	0	Periplasmic	binding	proteins	and	sugar	binding	domain	of	LacI	family
DapB_C	PF05173.9	gi|385802908|ref|YP_005839308.1|	-	1.3e-37	128.4	0.1	1.9e-37	127.9	0.1	1.2	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	C-terminus
DapB_N	PF01113.15	gi|385802908|ref|YP_005839308.1|	-	1.3e-20	73.5	0.0	2.8e-20	72.4	0.0	1.6	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Semialdhyde_dh	PF01118.19	gi|385802908|ref|YP_005839308.1|	-	0.036	14.3	0.2	0.14	12.4	0.1	1.9	1	1	1	2	2	2	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
Bromo_TP	PF07524.8	gi|385802908|ref|YP_005839308.1|	-	0.08	12.6	0.0	0.18	11.5	0.0	1.5	1	0	0	1	1	1	0	Bromodomain	associated
THDPS_N_2	PF14805.1	gi|385802909|ref|YP_005839309.1|	-	1.3e-17	63.4	0.0	1.9e-17	62.8	0.0	1.3	1	0	0	1	1	1	1	Tetrahydrodipicolinate	N-succinyltransferase	N-terminal
Hexapep	PF00132.19	gi|385802909|ref|YP_005839309.1|	-	4.3e-13	48.1	8.4	1.2e-05	24.6	1.7	3.3	3	0	0	3	3	3	3	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.1	gi|385802909|ref|YP_005839309.1|	-	0.057	12.9	13.1	0.18	11.4	1.1	3.8	1	1	2	4	4	4	0	Hexapeptide	repeat	of	succinyl-transferase
Orn_Arg_deC_N	PF02784.11	gi|385802910|ref|YP_005839310.1|	-	9.5e-40	136.3	0.0	1.4e-39	135.7	0.0	1.2	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	pyridoxal	binding	domain
Orn_DAP_Arg_deC	PF00278.17	gi|385802910|ref|YP_005839310.1|	-	3.3e-20	71.9	0.0	6.2e-20	71.0	0.0	1.5	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	C-terminal	sheet	domain
DAP_epimerase	PF01678.14	gi|385802911|ref|YP_005839311.1|	-	1.5e-42	144.3	2.6	5.9e-21	74.6	0.1	2.2	2	0	0	2	2	2	2	Diaminopimelate	epimerase
PhzC-PhzF	PF02567.11	gi|385802911|ref|YP_005839311.1|	-	1.7e-05	24.1	0.6	4.2e-05	22.9	0.2	1.5	1	1	1	2	2	2	1	Phenazine	biosynthesis-like	protein
Pro_racemase	PF05544.6	gi|385802911|ref|YP_005839311.1|	-	0.0017	17.2	2.8	0.16	10.7	0.1	2.2	2	0	0	2	2	2	2	Proline	racemase
Peptidase_M20	PF01546.23	gi|385802912|ref|YP_005839312.1|	-	3.2e-22	78.9	8.1	5.6e-22	78.1	5.6	1.4	1	1	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|385802912|ref|YP_005839312.1|	-	1.8e-18	66.3	0.1	3.3e-18	65.4	0.0	1.5	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
RNase_P_p30	PF01876.11	gi|385802913|ref|YP_005839313.1|	-	1e-31	109.1	0.0	1.9e-31	108.3	0.0	1.4	1	0	0	1	1	1	1	RNase	P	subunit	p30
Methyltransf_11	PF08241.7	gi|385802914|ref|YP_005839314.1|	-	2.4e-13	50.4	0.0	4.4e-13	49.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|385802914|ref|YP_005839314.1|	-	4e-13	49.2	0.1	5.4e-13	48.7	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|385802914|ref|YP_005839314.1|	-	2.3e-12	47.4	0.2	4.7e-12	46.4	0.1	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|385802914|ref|YP_005839314.1|	-	3.7e-10	40.0	0.1	9.2e-10	38.7	0.0	1.7	2	0	0	2	2	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|385802914|ref|YP_005839314.1|	-	3.5e-09	36.1	0.2	6.1e-09	35.3	0.1	1.4	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.7	gi|385802914|ref|YP_005839314.1|	-	1.4e-08	35.0	0.1	2.3e-08	34.4	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|385802914|ref|YP_005839314.1|	-	3.5e-05	23.8	0.1	4.7e-05	23.4	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|385802914|ref|YP_005839314.1|	-	6.1e-05	22.7	0.0	9.2e-05	22.2	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|385802914|ref|YP_005839314.1|	-	0.00033	20.0	0.2	0.00047	19.5	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
RrnaAD	PF00398.15	gi|385802914|ref|YP_005839314.1|	-	0.00037	19.6	0.0	0.00044	19.3	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
PrmA	PF06325.8	gi|385802914|ref|YP_005839314.1|	-	0.0022	17.1	0.2	0.0032	16.6	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_2	PF00891.13	gi|385802914|ref|YP_005839314.1|	-	0.0028	16.9	0.1	0.0033	16.6	0.0	1.1	1	0	0	1	1	1	1	O-methyltransferase
Methyltransf_32	PF13679.1	gi|385802914|ref|YP_005839314.1|	-	0.0076	15.9	0.0	0.01	15.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
DREV	PF05219.7	gi|385802914|ref|YP_005839314.1|	-	0.018	13.8	0.0	0.023	13.5	0.0	1.2	1	0	0	1	1	1	0	DREV	methyltransferase
UPF0020	PF01170.13	gi|385802914|ref|YP_005839314.1|	-	0.032	13.7	0.3	0.052	13.1	0.2	1.3	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Methyltransf_4	PF02390.12	gi|385802914|ref|YP_005839314.1|	-	0.052	12.6	0.0	0.068	12.2	0.0	1.2	1	0	0	1	1	1	0	Putative	methyltransferase
tRNA_U5-meth_tr	PF05958.6	gi|385802914|ref|YP_005839314.1|	-	0.054	12.1	0.0	0.073	11.7	0.0	1.1	1	0	0	1	1	1	0	tRNA	(Uracil-5-)-methyltransferase
PCMT	PF01135.14	gi|385802914|ref|YP_005839314.1|	-	0.067	12.7	0.0	0.094	12.2	0.0	1.2	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
FtsJ	PF01728.14	gi|385802914|ref|YP_005839314.1|	-	0.09	12.7	0.1	0.1	12.5	0.0	1.2	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
CMAS	PF02353.15	gi|385802914|ref|YP_005839314.1|	-	0.15	11.0	0.0	0.24	10.4	0.0	1.3	1	1	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
RNase_P_Rpp14	PF01900.14	gi|385802915|ref|YP_005839315.1|	-	3.6e-23	81.5	0.0	4.8e-23	81.1	0.0	1.2	1	0	0	1	1	1	1	Rpp14/Pop5	family
Proteasome	PF00227.21	gi|385802916|ref|YP_005839316.1|	-	3.9e-58	195.8	0.0	5.3e-58	195.4	0.0	1.2	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome_A_N	PF10584.4	gi|385802916|ref|YP_005839316.1|	-	2.6e-14	52.1	0.1	4.4e-14	51.4	0.1	1.4	1	0	0	1	1	1	1	Proteasome	subunit	A	N-terminal	signature
MarR	PF01047.17	gi|385802917|ref|YP_005839317.1|	-	1.2e-05	24.8	0.0	1.7e-05	24.4	0.0	1.2	1	0	0	1	1	1	1	MarR	family
B-block_TFIIIC	PF04182.7	gi|385802917|ref|YP_005839317.1|	-	0.0021	17.8	0.0	0.0029	17.4	0.0	1.2	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
MarR_2	PF12802.2	gi|385802917|ref|YP_005839317.1|	-	0.051	13.2	0.0	0.082	12.5	0.0	1.4	1	0	0	1	1	1	0	MarR	family
NRDE	PF05742.7	gi|385802918|ref|YP_005839318.1|	-	8.6e-25	87.5	0.0	1.2e-24	87.0	0.0	1.2	1	0	0	1	1	1	1	NRDE	protein
HTH_12	PF08461.5	gi|385802919|ref|YP_005839319.1|	-	0.0053	16.4	0.0	0.011	15.4	0.0	1.7	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
Phage_rep_org_N	PF09681.5	gi|385802919|ref|YP_005839319.1|	-	0.02	14.4	0.0	0.035	13.6	0.0	1.5	1	1	1	2	2	2	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
MotA_activ	PF09114.5	gi|385802919|ref|YP_005839319.1|	-	0.059	13.1	0.0	0.067	12.9	0.0	1.2	1	0	0	1	1	1	0	Transcription	factor	MotA,	activation	domain
Ribosomal_S19e	PF01090.14	gi|385802919|ref|YP_005839319.1|	-	0.071	12.5	0.0	0.27	10.6	0.0	1.8	1	1	0	1	1	1	0	Ribosomal	protein	S19e
HTH_15	PF12324.3	gi|385802919|ref|YP_005839319.1|	-	0.088	12.4	0.0	0.19	11.3	0.0	1.6	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	alkylmercury	lyase
HSBP1	PF06825.7	gi|385802919|ref|YP_005839319.1|	-	0.25	10.9	3.0	3.3	7.3	0.1	2.5	2	1	0	2	2	2	0	Heat	shock	factor	binding	protein	1
Trp_halogenase	PF04820.9	gi|385802920|ref|YP_005839320.1|	-	3.1e-11	42.5	3.4	7e-08	31.5	0.0	2.3	2	0	0	2	2	2	2	Tryptophan	halogenase
DAO	PF01266.19	gi|385802920|ref|YP_005839320.1|	-	5.4e-10	38.6	5.7	4.2e-06	25.9	0.3	2.5	2	1	0	3	3	3	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|385802920|ref|YP_005839320.1|	-	1.9e-09	36.9	4.2	1.5e-07	30.6	1.2	2.5	3	0	0	3	3	2	2	FAD	binding	domain
FAD_binding_3	PF01494.14	gi|385802920|ref|YP_005839320.1|	-	9.9e-09	34.6	0.9	0.003	16.6	0.0	2.2	2	0	0	2	2	2	2	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|385802920|ref|YP_005839320.1|	-	5.8e-08	32.2	7.8	0.0001	21.5	3.8	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
GIDA	PF01134.17	gi|385802920|ref|YP_005839320.1|	-	3.8e-07	29.3	0.3	3.8e-07	29.3	0.2	1.8	2	0	0	2	2	1	1	Glucose	inhibited	division	protein	A
Pyr_redox_2	PF07992.9	gi|385802920|ref|YP_005839320.1|	-	7.2e-07	29.2	3.9	7.8e-07	29.1	0.2	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|385802920|ref|YP_005839320.1|	-	9.3e-07	29.0	0.0	1.8e-06	28.1	0.0	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.12	gi|385802920|ref|YP_005839320.1|	-	1.6e-06	27.3	2.8	3.4e-06	26.3	0.1	2.6	2	1	1	3	3	3	1	Thi4	family
HI0933_like	PF03486.9	gi|385802920|ref|YP_005839320.1|	-	4.4e-05	22.1	1.4	4.4e-05	22.1	1.0	1.9	2	0	0	2	2	2	1	HI0933-like	protein
NAD_binding_8	PF13450.1	gi|385802920|ref|YP_005839320.1|	-	0.00018	21.4	0.9	0.00018	21.4	0.6	2.7	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.22	gi|385802920|ref|YP_005839320.1|	-	0.00032	21.0	10.6	0.0042	17.4	0.4	3.2	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.13	gi|385802920|ref|YP_005839320.1|	-	0.0025	17.5	0.1	0.0051	16.4	0.1	1.5	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.11	gi|385802920|ref|YP_005839320.1|	-	0.011	15.1	0.3	0.023	14.1	0.1	1.7	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
Mqo	PF06039.10	gi|385802920|ref|YP_005839320.1|	-	0.024	12.8	0.1	0.042	12.0	0.1	1.3	1	0	0	1	1	1	0	Malate:quinone	oxidoreductase	(Mqo)
AlaDh_PNT_C	PF01262.16	gi|385802920|ref|YP_005839320.1|	-	0.031	13.8	0.5	0.031	13.8	0.3	1.7	2	0	0	2	2	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Lycopene_cycl	PF05834.7	gi|385802920|ref|YP_005839320.1|	-	0.061	12.2	5.8	0.083	11.7	1.0	2.4	3	0	0	3	3	3	0	Lycopene	cyclase	protein
ThiF	PF00899.16	gi|385802920|ref|YP_005839320.1|	-	0.13	12.0	0.6	0.41	10.4	0.1	1.9	2	0	0	2	2	2	0	ThiF	family
GDI	PF00996.13	gi|385802920|ref|YP_005839320.1|	-	0.13	10.5	0.2	9.5	4.4	0.1	2.1	2	0	0	2	2	2	0	GDP	dissociation	inhibitor
PGM_PMM_I	PF02878.11	gi|385802921|ref|YP_005839321.1|	-	1e-36	125.4	0.8	2.6e-35	120.8	0.1	2.4	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.11	gi|385802921|ref|YP_005839321.1|	-	7.8e-23	80.7	0.0	1.7e-22	79.6	0.0	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_IV	PF00408.15	gi|385802921|ref|YP_005839321.1|	-	7.1e-10	38.7	0.0	2.4e-09	37.0	0.0	1.9	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
PGM_PMM_III	PF02880.11	gi|385802921|ref|YP_005839321.1|	-	0.035	14.1	0.0	0.071	13.1	0.0	1.5	1	0	0	1	1	1	0	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
Acylphosphatase	PF00708.13	gi|385802922|ref|YP_005839322.1|	-	9.2e-27	92.9	0.0	9.8e-27	92.8	0.0	1.0	1	0	0	1	1	1	1	Acylphosphatase
GHMP_kinases_N	PF00288.21	gi|385802924|ref|YP_005839324.1|	-	1.8e-05	24.7	5.2	7.7e-05	22.6	1.5	2.4	1	1	1	2	2	2	2	GHMP	kinases	N	terminal	domain
Pyr_redox	PF00070.22	gi|385802925|ref|YP_005839325.1|	-	2.3e-11	43.9	0.1	1.5e-07	31.7	0.0	2.7	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.9	gi|385802925|ref|YP_005839325.1|	-	5.1e-07	29.7	1.0	0.00016	21.6	0.0	2.3	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|385802925|ref|YP_005839325.1|	-	0.00025	21.0	0.1	1.1	9.3	0.0	3.3	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.1	gi|385802925|ref|YP_005839325.1|	-	0.00036	20.6	0.2	0.023	14.7	0.2	2.4	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|385802925|ref|YP_005839325.1|	-	0.00042	20.1	0.8	0.23	11.2	0.0	2.9	3	0	0	3	3	3	2	FAD-NAD(P)-binding
Lycopene_cycl	PF05834.7	gi|385802925|ref|YP_005839325.1|	-	0.0013	17.7	0.1	0.46	9.3	0.0	2.2	2	0	0	2	2	2	2	Lycopene	cyclase	protein
DAO	PF01266.19	gi|385802925|ref|YP_005839325.1|	-	0.0028	16.5	2.8	0.78	8.5	0.4	3.2	2	1	0	3	3	3	1	FAD	dependent	oxidoreductase
TrkA_N	PF02254.13	gi|385802925|ref|YP_005839325.1|	-	0.0043	17.0	0.2	1.5	8.8	0.0	2.7	2	0	0	2	2	2	1	TrkA-N	domain
UDPG_MGDP_dh_N	PF03721.9	gi|385802925|ref|YP_005839325.1|	-	0.039	13.3	0.0	0.12	11.7	0.0	1.9	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Thi4	PF01946.12	gi|385802925|ref|YP_005839325.1|	-	0.057	12.5	0.2	1.1	8.2	0.0	2.4	2	0	0	2	2	2	0	Thi4	family
MGS	PF02142.17	gi|385802926|ref|YP_005839326.1|	-	6.2e-16	58.1	0.0	8.2e-16	57.7	0.0	1.2	1	0	0	1	1	1	1	MGS-like	domain
DUF371	PF04027.8	gi|385802927|ref|YP_005839327.1|	-	3.2e-53	178.9	0.9	3.8e-53	178.6	0.6	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF371)
TPR_MLP1_2	PF07926.7	gi|385802928|ref|YP_005839328.1|	-	0.00048	19.8	13.7	0.00048	19.8	9.5	3.5	2	1	0	2	2	2	1	TPR/MLP1/MLP2-like	protein
AAA_27	PF13514.1	gi|385802928|ref|YP_005839328.1|	-	0.21	9.2	50.5	0.26	8.8	35.0	1.1	1	0	0	1	1	1	0	AAA	domain
COG2	PF06148.6	gi|385802928|ref|YP_005839328.1|	-	0.79	9.5	34.3	0.033	14.0	2.1	4.5	1	1	3	4	4	4	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF948	PF06103.6	gi|385802928|ref|YP_005839328.1|	-	1.2	9.0	20.3	3.5	7.5	1.8	4.2	1	1	3	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF373	PF04123.8	gi|385802929|ref|YP_005839329.1|	-	8.6e-113	376.8	8.5	9.8e-113	376.6	5.9	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
DUF3185	PF11381.3	gi|385802929|ref|YP_005839329.1|	-	0.022	14.4	4.6	2.2	8.1	0.0	3.3	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF3185)
DUF4077	PF13295.1	gi|385802930|ref|YP_005839330.1|	-	0.054	13.2	0.4	0.058	13.1	0.3	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4077)
DUF1469	PF07332.6	gi|385802930|ref|YP_005839330.1|	-	0.16	11.6	3.4	0.19	11.4	2.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
Aldo_ket_red	PF00248.16	gi|385802931|ref|YP_005839331.1|	-	8.6e-63	211.7	0.0	1e-62	211.5	0.0	1.1	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Trp_halogenase	PF04820.9	gi|385802932|ref|YP_005839332.1|	-	6.1e-14	51.5	4.1	3.1e-11	42.5	0.0	2.2	1	1	1	2	2	2	2	Tryptophan	halogenase
FAD_binding_3	PF01494.14	gi|385802932|ref|YP_005839332.1|	-	3e-12	46.2	3.3	5e-11	42.2	2.3	2.1	1	1	0	1	1	1	1	FAD	binding	domain
DAO	PF01266.19	gi|385802932|ref|YP_005839332.1|	-	5.4e-10	38.7	5.1	9.5e-05	21.4	0.0	2.3	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|385802932|ref|YP_005839332.1|	-	8.7e-10	38.0	6.8	7.1e-05	21.8	2.5	2.5	3	0	0	3	3	3	2	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|385802932|ref|YP_005839332.1|	-	1.1e-09	37.9	7.1	2.8e-09	36.5	5.0	1.6	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
GIDA	PF01134.17	gi|385802932|ref|YP_005839332.1|	-	2.2e-07	30.0	0.2	3.5e-07	29.4	0.1	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Pyr_redox_2	PF07992.9	gi|385802932|ref|YP_005839332.1|	-	1.1e-05	25.3	0.2	2.3e-05	24.3	0.1	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|385802932|ref|YP_005839332.1|	-	1.2e-05	24.0	2.6	0.00018	20.1	0.6	2.2	2	0	0	2	2	2	1	HI0933-like	protein
Thi4	PF01946.12	gi|385802932|ref|YP_005839332.1|	-	0.00052	19.1	0.7	0.0016	17.5	0.1	2.0	2	0	0	2	2	2	1	Thi4	family
Pyr_redox	PF00070.22	gi|385802932|ref|YP_005839332.1|	-	0.00086	19.6	1.4	0.53	10.7	0.3	2.4	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|385802932|ref|YP_005839332.1|	-	0.0024	17.9	0.5	0.0059	16.6	0.3	1.7	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.7	gi|385802932|ref|YP_005839332.1|	-	0.0066	15.4	2.9	0.7	8.7	0.1	2.3	2	1	0	2	2	2	2	Lycopene	cyclase	protein
NAD_binding_8	PF13450.1	gi|385802932|ref|YP_005839332.1|	-	0.018	15.0	0.5	0.053	13.5	0.3	1.8	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
AlaDh_PNT_C	PF01262.16	gi|385802932|ref|YP_005839332.1|	-	0.033	13.7	0.1	0.062	12.8	0.0	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
GMC_oxred_N	PF00732.14	gi|385802932|ref|YP_005839332.1|	-	0.047	12.8	0.1	5.4	6.0	0.0	2.2	2	0	0	2	2	2	0	GMC	oxidoreductase
TPP_enzyme_C	PF02775.16	gi|385802933|ref|YP_005839333.1|	-	4.1e-31	107.6	0.2	6.3e-31	107.0	0.1	1.4	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PFO_beta_C	PF12367.3	gi|385802933|ref|YP_005839333.1|	-	1.2e-13	50.7	0.2	3e-13	49.4	0.1	1.7	2	0	0	2	2	2	1	Pyruvate	ferredoxin	oxidoreductase	beta	subunit	C	terminal
POR_N	PF01855.14	gi|385802934|ref|YP_005839334.1|	-	3.2e-59	200.2	0.3	5.4e-59	199.4	0.2	1.3	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
POR	PF01558.13	gi|385802934|ref|YP_005839334.1|	-	1.6e-41	142.1	0.1	3.1e-41	141.1	0.1	1.5	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
TPP_enzyme_N	PF02776.13	gi|385802934|ref|YP_005839334.1|	-	6.5e-05	22.4	0.9	9.9e-05	21.8	0.2	1.6	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
MsyB	PF13984.1	gi|385802934|ref|YP_005839334.1|	-	0.026	14.5	0.1	0.064	13.2	0.1	1.6	1	0	0	1	1	1	0	MsyB	protein
FAD_binding_6	PF00970.19	gi|385802935|ref|YP_005839335.1|	-	3.3e-12	46.3	0.0	5.2e-12	45.7	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
FAD_binding_9	PF08021.6	gi|385802935|ref|YP_005839335.1|	-	0.0036	17.2	0.0	0.019	14.8	0.0	2.0	1	1	1	2	2	2	1	Siderophore-interacting	FAD-binding	domain
AMP-binding	PF00501.23	gi|385802936|ref|YP_005839336.1|	-	2e-90	303.1	0.2	2.6e-90	302.8	0.2	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|385802936|ref|YP_005839336.1|	-	2.5e-17	63.5	0.1	6.1e-17	62.3	0.1	1.7	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
DMRL_synthase	PF00885.14	gi|385802936|ref|YP_005839336.1|	-	0.072	12.7	0.0	0.13	11.9	0.0	1.3	1	0	0	1	1	1	0	6,7-dimethyl-8-ribityllumazine	synthase
MMPL	PF03176.10	gi|385802937|ref|YP_005839337.1|	-	4.1e-44	150.6	23.1	1.4e-22	79.8	6.3	2.5	2	0	0	2	2	2	2	MMPL	family
Sterol-sensing	PF12349.3	gi|385802937|ref|YP_005839337.1|	-	1.5e-13	50.4	19.5	2.7e-09	36.6	0.4	3.0	3	0	0	3	3	3	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
Patched	PF02460.13	gi|385802937|ref|YP_005839337.1|	-	1.7e-13	49.4	21.6	1.3e-07	29.9	5.6	2.2	2	0	0	2	2	2	2	Patched	family
ACR_tran	PF00873.14	gi|385802937|ref|YP_005839337.1|	-	5.9e-10	37.2	20.9	1.9e-05	22.3	2.8	2.4	2	0	0	2	2	2	2	AcrB/AcrD/AcrF	family
NPCBM_assoc	PF10633.4	gi|385802938|ref|YP_005839338.1|	-	1.4e-19	69.8	11.0	7.3e-06	25.9	0.3	5.3	4	2	0	4	4	4	4	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
CARDB	PF07705.6	gi|385802938|ref|YP_005839338.1|	-	6.9e-17	61.3	10.6	4.4e-07	29.8	1.0	4.1	4	1	0	4	4	4	3	CARDB
TRAP_alpha	PF03896.11	gi|385802938|ref|YP_005839338.1|	-	8.1e-06	25.0	0.4	0.036	13.0	0.0	2.5	2	0	0	2	2	2	2	Translocon-associated	protein	(TRAP),	alpha	subunit
Fn3-like	PF14310.1	gi|385802938|ref|YP_005839338.1|	-	6.4e-05	22.8	0.2	10	6.1	0.0	4.9	4	0	0	4	4	4	2	Fibronectin	type	III-like	domain
DUF11	PF01345.13	gi|385802938|ref|YP_005839338.1|	-	0.00015	21.7	10.6	0.31	11.1	0.1	4.9	4	0	0	4	4	4	3	Domain	of	unknown	function	DUF11
HTH_24	PF13412.1	gi|385802939|ref|YP_005839339.1|	-	3.1e-07	29.6	0.0	5.1e-07	28.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|385802939|ref|YP_005839339.1|	-	2.2e-05	24.0	0.1	2.7e-05	23.7	0.1	1.2	1	0	0	1	1	1	1	MarR	family
GntR	PF00392.16	gi|385802939|ref|YP_005839339.1|	-	0.00019	20.7	0.2	0.00031	20.1	0.1	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_20	PF12840.2	gi|385802939|ref|YP_005839339.1|	-	0.00042	20.0	0.0	0.00062	19.5	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
TFIIE_alpha	PF02002.12	gi|385802939|ref|YP_005839339.1|	-	0.00062	19.2	0.0	0.00072	19.0	0.0	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
MarR	PF01047.17	gi|385802939|ref|YP_005839339.1|	-	0.0019	17.8	0.0	0.0025	17.4	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|385802939|ref|YP_005839339.1|	-	0.002	18.4	0.1	0.0027	17.9	0.1	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|385802939|ref|YP_005839339.1|	-	0.0044	16.6	0.1	0.0053	16.4	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Sigma70_r4_2	PF08281.7	gi|385802939|ref|YP_005839339.1|	-	0.008	15.6	0.0	0.014	14.8	0.0	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_5	PF01022.15	gi|385802939|ref|YP_005839339.1|	-	0.01	15.4	0.0	0.014	15.0	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_28	PF13518.1	gi|385802939|ref|YP_005839339.1|	-	0.025	14.5	0.0	0.033	14.2	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
Rrf2	PF02082.15	gi|385802939|ref|YP_005839339.1|	-	0.026	14.6	0.0	0.035	14.2	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_Crp_2	PF13545.1	gi|385802939|ref|YP_005839339.1|	-	0.036	13.8	0.0	0.045	13.5	0.0	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.1	gi|385802939|ref|YP_005839339.1|	-	0.07	12.7	0.0	0.11	12.1	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
MMPL	PF03176.10	gi|385802940|ref|YP_005839340.1|	-	5.2e-34	117.4	21.1	5.3e-20	71.3	5.1	2.4	2	0	0	2	2	2	2	MMPL	family
Sterol-sensing	PF12349.3	gi|385802940|ref|YP_005839340.1|	-	2.5e-13	49.7	3.6	1.3e-08	34.4	0.3	2.8	2	0	0	2	2	2	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
Patched	PF02460.13	gi|385802940|ref|YP_005839340.1|	-	2.2e-09	35.8	21.4	2.1e-08	32.6	5.4	2.2	2	0	0	2	2	2	2	Patched	family
TMEM154	PF15102.1	gi|385802940|ref|YP_005839340.1|	-	8.6	6.0	7.4	60	3.3	0.0	3.4	2	1	0	2	2	2	0	TMEM154	protein	family
NPCBM_assoc	PF10633.4	gi|385802941|ref|YP_005839341.1|	-	1.6e-10	40.9	15.6	0.0044	17.0	0.1	6.7	6	1	0	6	6	6	3	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
CARDB	PF07705.6	gi|385802941|ref|YP_005839341.1|	-	2.3e-10	40.4	12.6	0.00016	21.6	0.0	5.2	3	1	1	4	4	4	4	CARDB
DUF11	PF01345.13	gi|385802941|ref|YP_005839341.1|	-	8.9e-09	35.2	9.9	0.0064	16.5	0.2	4.8	4	1	0	4	4	4	2	Domain	of	unknown	function	DUF11
Transglut_C	PF00927.17	gi|385802941|ref|YP_005839341.1|	-	0.0002	21.3	0.6	0.041	13.9	0.0	3.8	4	0	0	4	4	4	1	Transglutaminase	family,	C-terminal	ig	like	domain
DUF1081	PF06448.6	gi|385802941|ref|YP_005839341.1|	-	0.00079	19.3	3.3	0.02	14.7	0.1	3.2	2	1	1	3	3	3	1	Domain	of	Unknown	Function	(DUF1081)
Inhibitor_I42	PF09394.5	gi|385802941|ref|YP_005839341.1|	-	0.034	14.4	1.6	0.3	11.4	0.0	3.2	3	0	0	3	3	3	0	Chagasin	family	peptidase	inhibitor	I42
Alpha_adaptinC2	PF02883.15	gi|385802941|ref|YP_005839341.1|	-	0.047	14.0	2.9	2.6	8.3	0.7	2.7	1	1	2	3	3	3	0	Adaptin	C-terminal	domain
DUF4232	PF14016.1	gi|385802941|ref|YP_005839341.1|	-	0.32	10.6	9.6	11	5.6	0.1	4.5	3	1	0	4	4	4	0	Protein	of	unknown	function	(DUF4232)
AAA	PF00004.24	gi|385802942|ref|YP_005839342.1|	-	6.6e-46	155.7	2.5	1.8e-45	154.3	0.0	2.4	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_2	PF07724.9	gi|385802942|ref|YP_005839342.1|	-	2.8e-09	37.1	0.0	9e-09	35.4	0.0	1.9	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
AAA_5	PF07728.9	gi|385802942|ref|YP_005839342.1|	-	2.4e-07	30.5	0.2	3.1e-06	26.9	0.2	2.6	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
RuvB_N	PF05496.7	gi|385802942|ref|YP_005839342.1|	-	6.3e-07	28.6	0.0	1.5e-06	27.4	0.0	1.7	2	0	0	2	2	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_16	PF13191.1	gi|385802942|ref|YP_005839342.1|	-	6.6e-07	29.4	3.7	2.7e-05	24.2	0.0	3.7	2	2	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|385802942|ref|YP_005839342.1|	-	1.4e-06	28.4	2.7	4.1e-05	23.7	0.1	2.9	2	2	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|385802942|ref|YP_005839342.1|	-	4.9e-06	27.3	0.3	2.8e-05	24.9	0.0	2.3	2	1	0	2	2	2	1	AAA	domain
DUF815	PF05673.8	gi|385802942|ref|YP_005839342.1|	-	5.9e-05	22.1	0.0	0.00013	20.9	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_14	PF13173.1	gi|385802942|ref|YP_005839342.1|	-	0.00012	21.9	0.2	0.00086	19.2	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_24	PF13479.1	gi|385802942|ref|YP_005839342.1|	-	0.00023	20.7	1.0	0.008	15.7	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
Sigma54_activat	PF00158.21	gi|385802942|ref|YP_005839342.1|	-	0.00043	19.7	0.1	0.023	14.1	0.1	2.8	1	1	0	1	1	1	1	Sigma-54	interaction	domain
NACHT	PF05729.7	gi|385802942|ref|YP_005839342.1|	-	0.00064	19.4	0.1	0.043	13.4	0.0	2.6	1	1	0	2	2	2	1	NACHT	domain
IstB_IS21	PF01695.12	gi|385802942|ref|YP_005839342.1|	-	0.00081	18.8	0.1	0.0025	17.2	0.0	1.9	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
Mg_chelatase	PF01078.16	gi|385802942|ref|YP_005839342.1|	-	0.00094	18.4	0.2	0.0031	16.6	0.1	1.9	2	0	0	2	2	1	1	Magnesium	chelatase,	subunit	ChlI
TIP49	PF06068.8	gi|385802942|ref|YP_005839342.1|	-	0.001	17.8	0.7	0.0027	16.5	0.0	2.0	2	0	0	2	2	2	1	TIP49	C-terminus
AAA_18	PF13238.1	gi|385802942|ref|YP_005839342.1|	-	0.001	19.3	0.4	0.014	15.7	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
AAA_19	PF13245.1	gi|385802942|ref|YP_005839342.1|	-	0.0013	18.4	0.2	0.0035	17.0	0.1	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
DUF4201	PF13870.1	gi|385802942|ref|YP_005839342.1|	-	0.0027	17.1	5.4	0.0048	16.3	3.7	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4201)
AAA_33	PF13671.1	gi|385802942|ref|YP_005839342.1|	-	0.0028	17.5	0.0	0.0091	15.8	0.0	2.0	1	0	0	1	1	1	1	AAA	domain
GrpE	PF01025.14	gi|385802942|ref|YP_005839342.1|	-	0.003	17.1	6.9	0.003	17.1	4.8	1.7	2	0	0	2	2	1	1	GrpE
ATG16	PF08614.6	gi|385802942|ref|YP_005839342.1|	-	0.0037	17.1	10.0	0.0037	17.1	6.9	2.3	2	0	0	2	2	2	1	Autophagy	protein	16	(ATG16)
AAA_28	PF13521.1	gi|385802942|ref|YP_005839342.1|	-	0.0041	17.1	0.1	0.012	15.6	0.0	2.0	2	0	0	2	2	1	1	AAA	domain
Sigma54_activ_2	PF14532.1	gi|385802942|ref|YP_005839342.1|	-	0.0041	17.1	0.1	0.024	14.6	0.0	2.4	2	1	0	2	2	1	1	Sigma-54	interaction	domain
RNA_helicase	PF00910.17	gi|385802942|ref|YP_005839342.1|	-	0.0044	17.1	0.0	0.012	15.7	0.0	1.8	1	0	0	1	1	1	1	RNA	helicase
Zeta_toxin	PF06414.7	gi|385802942|ref|YP_005839342.1|	-	0.0047	16.0	0.4	0.014	14.5	0.0	1.9	2	0	0	2	2	2	1	Zeta	toxin
NTPase_1	PF03266.10	gi|385802942|ref|YP_005839342.1|	-	0.0051	16.5	5.2	0.3	10.7	0.2	3.6	2	2	1	3	3	3	1	NTPase
Arch_ATPase	PF01637.13	gi|385802942|ref|YP_005839342.1|	-	0.0059	16.3	2.0	0.068	12.8	0.0	2.8	2	1	0	2	2	2	1	Archaeal	ATPase
NB-ARC	PF00931.17	gi|385802942|ref|YP_005839342.1|	-	0.0089	14.9	0.1	0.11	11.2	0.0	2.4	2	0	0	2	2	2	1	NB-ARC	domain
AAA_11	PF13086.1	gi|385802942|ref|YP_005839342.1|	-	0.0095	15.5	1.5	0.31	10.5	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_3	PF07726.6	gi|385802942|ref|YP_005839342.1|	-	0.011	15.2	0.1	0.04	13.5	0.0	2.1	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Kinetocho_Slk19	PF12709.2	gi|385802942|ref|YP_005839342.1|	-	0.015	15.3	2.7	0.05	13.6	1.9	1.9	1	0	0	1	1	1	0	Central	kinetochore-associated
Parvo_NS1	PF01057.12	gi|385802942|ref|YP_005839342.1|	-	0.023	13.6	0.0	0.048	12.5	0.0	1.4	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
Creatininase	PF02633.9	gi|385802942|ref|YP_005839342.1|	-	0.023	13.7	0.0	0.04	12.9	0.0	1.3	1	0	0	1	1	1	0	Creatinine	amidohydrolase
KaiC	PF06745.8	gi|385802942|ref|YP_005839342.1|	-	0.029	13.4	6.2	0.27	10.3	0.0	3.3	2	2	0	3	3	3	0	KaiC
AAA_25	PF13481.1	gi|385802942|ref|YP_005839342.1|	-	0.033	13.5	10.5	0.038	13.3	0.1	3.4	3	1	1	4	4	4	0	AAA	domain
DUF2051	PF09738.4	gi|385802942|ref|YP_005839342.1|	-	0.036	13.3	12.0	0.013	14.7	6.4	1.6	2	0	0	2	2	2	0	Double	stranded	RNA	binding	protein	(DUF2051)
bZIP_1	PF00170.16	gi|385802942|ref|YP_005839342.1|	-	0.044	13.7	11.2	0.37	10.7	2.5	2.6	1	1	1	2	2	2	0	bZIP	transcription	factor
RapA_C	PF12137.3	gi|385802942|ref|YP_005839342.1|	-	0.06	12.1	8.8	0.63	8.8	3.9	2.9	2	1	0	3	3	3	0	RNA	polymerase	recycling	family	C-terminal
APG6	PF04111.7	gi|385802942|ref|YP_005839342.1|	-	0.076	12.0	7.5	0.13	11.2	5.2	1.4	1	0	0	1	1	1	0	Autophagy	protein	Apg6
AAA_23	PF13476.1	gi|385802942|ref|YP_005839342.1|	-	0.099	12.9	9.1	4.2	7.6	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
ATP-synt_ab	PF00006.20	gi|385802942|ref|YP_005839342.1|	-	0.12	11.8	0.2	1.9	7.9	0.0	2.2	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ABC_tran	PF00005.22	gi|385802942|ref|YP_005839342.1|	-	0.17	12.1	5.1	0.2	11.9	0.0	2.7	2	1	0	2	2	1	0	ABC	transporter
IncA	PF04156.9	gi|385802942|ref|YP_005839342.1|	-	0.25	10.8	14.3	1.1	8.7	8.8	2.1	1	1	1	2	2	2	0	IncA	protein
Fmp27_WPPW	PF10359.4	gi|385802942|ref|YP_005839342.1|	-	0.45	8.8	7.4	0.85	7.9	5.1	1.4	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
eIF-4B	PF06273.6	gi|385802942|ref|YP_005839342.1|	-	0.47	9.1	4.4	0.7	8.5	3.1	1.2	1	0	0	1	1	1	0	Plant	specific	eukaryotic	initiation	factor	4B
Macoilin	PF09726.4	gi|385802942|ref|YP_005839342.1|	-	0.47	8.6	6.4	0.68	8.1	4.5	1.2	1	0	0	1	1	1	0	Transmembrane	protein
Cep57_CLD_2	PF14197.1	gi|385802942|ref|YP_005839342.1|	-	2.1	8.3	13.8	0.63	10.0	7.3	1.8	2	0	0	2	2	1	0	Centrosome	localisation	domain	of	PPC89
Nup54	PF13874.1	gi|385802942|ref|YP_005839342.1|	-	2.8	7.6	10.0	5.4	6.6	6.0	2.2	2	1	0	2	2	1	0	Nucleoporin	complex	subunit	54
HhH-GPD	PF00730.20	gi|385802943|ref|YP_005839343.1|	-	1.8e-23	82.8	0.0	1.1e-22	80.3	0.0	1.9	2	0	0	2	2	2	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.18	gi|385802943|ref|YP_005839343.1|	-	3.1e-10	39.1	0.0	8.8e-10	37.7	0.0	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
EndIII_4Fe-2S	PF10576.4	gi|385802943|ref|YP_005839343.1|	-	0.0025	17.9	2.2	0.0049	17.0	1.5	1.5	1	0	0	1	1	1	1	Iron-sulfur	binding	domain	of	endonuclease	III
HHH_5	PF14520.1	gi|385802943|ref|YP_005839343.1|	-	0.0029	17.7	0.1	0.29	11.3	0.0	2.3	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
DUF3349	PF11829.3	gi|385802943|ref|YP_005839343.1|	-	0.02	15.3	0.1	0.06	13.7	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3349)
DUF4125	PF13526.1	gi|385802943|ref|YP_005839343.1|	-	0.11	11.9	0.2	0.29	10.6	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4125)
IncA	PF04156.9	gi|385802945|ref|YP_005839345.1|	-	0.014	15.0	0.3	0.032	13.8	0.0	1.7	2	0	0	2	2	2	0	IncA	protein
DUF3951	PF13131.1	gi|385802945|ref|YP_005839345.1|	-	0.15	11.8	1.7	0.28	10.9	1.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3951)
Copper-bind	PF00127.15	gi|385802946|ref|YP_005839346.1|	-	5.3e-13	49.0	0.1	1.3e-12	47.8	0.0	1.7	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Mucin	PF01456.12	gi|385802946|ref|YP_005839346.1|	-	4.7	6.9	24.6	10	5.8	17.0	1.5	1	0	0	1	1	1	0	Mucin-like	glycoprotein
ABC2_membrane_4	PF12730.2	gi|385802947|ref|YP_005839347.1|	-	2.8	7.0	8.6	3.5	6.7	5.9	1.1	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
Cytochrom_B_N_2	PF13631.1	gi|385802948|ref|YP_005839348.1|	-	1e-41	142.5	15.2	2.6e-41	141.2	8.3	2.1	2	0	0	2	2	2	1	Cytochrome	b(N-terminal)/b6/petB
Cytochrom_B_N	PF00033.14	gi|385802948|ref|YP_005839348.1|	-	9.6e-12	44.6	17.2	1.4e-11	44.1	11.9	1.2	1	0	0	1	1	1	1	Cytochrome	b(N-terminal)/b6/petB
PepSY_TM	PF03929.11	gi|385802948|ref|YP_005839348.1|	-	0.074	13.4	0.1	0.074	13.4	0.0	3.8	3	1	0	3	3	3	0	PepSY-associated	TM	helix
Cytochrom_B_C	PF00032.12	gi|385802949|ref|YP_005839349.1|	-	1.4e-08	34.8	0.1	3.2e-08	33.7	0.0	1.6	1	1	0	1	1	1	1	Cytochrome	b(C-terminal)/b6/petD
MARVEL	PF01284.18	gi|385802949|ref|YP_005839349.1|	-	0.17	11.7	4.8	0.47	10.2	3.3	1.8	1	1	0	1	1	1	0	Membrane-associating	domain
Tnp_DNA_bind	PF14706.1	gi|385802950|ref|YP_005839350.1|	-	1e-24	85.9	0.0	1.8e-24	85.2	0.0	1.4	1	0	0	1	1	1	1	Transposase	DNA-binding
DDE_Tnp_1	PF01609.16	gi|385802950|ref|YP_005839350.1|	-	8.8e-06	25.4	0.1	2.3e-05	24.0	0.1	1.7	2	1	0	2	2	2	1	Transposase	DDE	domain
Dimer_Tnp_Tn5	PF02281.11	gi|385802950|ref|YP_005839350.1|	-	0.063	13.4	0.1	0.17	12.0	0.0	1.7	2	0	0	2	2	2	0	Transposase	Tn5	dimerisation	domain
DUF1049	PF06305.6	gi|385802951|ref|YP_005839351.1|	-	0.15	11.5	1.8	0.22	11.0	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1049)
DUF2985	PF11204.3	gi|385802951|ref|YP_005839351.1|	-	0.34	10.6	1.9	0.75	9.5	1.3	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2985)
SPC12	PF06645.8	gi|385802951|ref|YP_005839351.1|	-	1	9.2	3.0	2	8.2	2.1	1.5	1	0	0	1	1	1	0	Microsomal	signal	peptidase	12	kDa	subunit	(SPC12)
EBP	PF05241.7	gi|385802952|ref|YP_005839352.1|	-	0.98	8.3	4.6	0.91	8.4	2.1	1.6	1	1	0	2	2	2	0	Emopamil	binding	protein
DUF3951	PF13131.1	gi|385802952|ref|YP_005839352.1|	-	3	7.6	5.7	5.1	6.9	3.9	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3951)
Voltage_CLC	PF00654.15	gi|385802953|ref|YP_005839353.1|	-	0.016	14.2	1.5	0.019	14.0	1.0	1.1	1	0	0	1	1	1	0	Voltage	gated	chloride	channel
Polysacc_synt_C	PF14667.1	gi|385802953|ref|YP_005839353.1|	-	0.64	9.8	5.7	2	8.2	0.4	2.3	2	0	0	2	2	2	0	Polysaccharide	biosynthesis	C-terminal	domain
PRA1	PF03208.14	gi|385802953|ref|YP_005839353.1|	-	0.94	8.8	3.9	0.28	10.5	1.0	1.4	2	0	0	2	2	2	0	PRA1	family	protein
DUF202	PF02656.10	gi|385802953|ref|YP_005839353.1|	-	1.5	9.0	5.8	57	4.0	0.2	2.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF202)
Abhydrolase_6	PF12697.2	gi|385802954|ref|YP_005839354.1|	-	6.5e-29	101.4	0.0	8e-29	101.1	0.0	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_5	PF12695.2	gi|385802954|ref|YP_005839354.1|	-	3.8e-12	46.1	0.0	3.2e-11	43.1	0.0	2.0	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.15	gi|385802954|ref|YP_005839354.1|	-	0.00013	21.5	0.0	0.00079	19.0	0.0	2.1	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.3	gi|385802954|ref|YP_005839354.1|	-	0.00059	19.6	0.0	0.0011	18.7	0.0	1.5	1	0	0	1	1	1	1	Putative	lysophospholipase
MTH865	PF07747.6	gi|385802955|ref|YP_005839355.1|	-	2.4e-21	75.1	0.1	2.8e-21	74.9	0.1	1.0	1	0	0	1	1	1	1	MTH865-like	family
Copper-bind	PF00127.15	gi|385802956|ref|YP_005839356.1|	-	1.5e-12	47.5	0.0	2.7e-12	46.7	0.0	1.4	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupin_3	PF05899.7	gi|385802956|ref|YP_005839356.1|	-	0.022	14.1	0.4	0.042	13.2	0.3	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF861)
TraT	PF05818.7	gi|385802956|ref|YP_005839356.1|	-	0.024	14.0	2.7	0.037	13.4	1.9	1.3	1	0	0	1	1	1	0	Enterobacterial	TraT	complement	resistance	protein
Shadoo	PF14999.1	gi|385802956|ref|YP_005839356.1|	-	0.038	13.8	1.1	0.066	13.0	0.8	1.4	1	0	0	1	1	1	0	Shadow	of	prion	protein,	neuroprotective
Glycos_transf_1	PF00534.15	gi|385802957|ref|YP_005839357.1|	-	1.1e-15	57.4	0.0	2.1e-15	56.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|385802957|ref|YP_005839357.1|	-	5.4e-13	49.3	2.1	5.4e-13	49.3	1.5	1.8	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.1	gi|385802957|ref|YP_005839357.1|	-	2e-07	30.9	0.0	3.9e-07	29.9	0.0	1.5	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_2	PF13477.1	gi|385802957|ref|YP_005839357.1|	-	0.00016	21.5	0.0	0.00034	20.4	0.0	1.5	1	1	0	1	1	1	1	Glycosyl	transferase	4-like
SMP	PF04927.7	gi|385802957|ref|YP_005839357.1|	-	0.027	14.4	0.1	0.16	11.9	0.0	2.1	2	0	0	2	2	2	0	Seed	maturation	protein
DUF506	PF04720.7	gi|385802957|ref|YP_005839357.1|	-	0.1	12.2	0.0	0.17	11.5	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF506)
DUF420	PF04238.7	gi|385802958|ref|YP_005839358.1|	-	4e-40	136.8	7.0	4e-40	136.8	4.9	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF420)
Orai-1	PF07856.7	gi|385802958|ref|YP_005839358.1|	-	0.021	14.3	0.8	0.021	14.3	0.6	2.4	2	1	0	2	2	2	0	Mediator	of	CRAC	channel	activity
DUF2306	PF10067.4	gi|385802958|ref|YP_005839358.1|	-	0.041	14.0	14.4	0.089	12.9	2.8	3.2	2	1	0	3	3	3	0	Predicted	membrane	protein	(DUF2306)
PGG	PF13962.1	gi|385802958|ref|YP_005839358.1|	-	0.13	11.8	4.0	1.1	8.8	0.2	2.6	3	0	0	3	3	3	0	Domain	of	unknown	function
CTP_transf_1	PF01148.15	gi|385802958|ref|YP_005839358.1|	-	0.9	9.1	11.4	2.9	7.4	7.9	2.0	1	1	0	1	1	1	0	Cytidylyltransferase	family
DUF1240	PF06836.7	gi|385802958|ref|YP_005839358.1|	-	0.91	9.7	3.9	0.96	9.7	0.1	2.5	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1240)
DUF2231	PF09990.4	gi|385802958|ref|YP_005839358.1|	-	1.1	9.6	14.4	0.15	12.4	3.3	2.7	2	2	0	2	2	2	0	Predicted	membrane	protein	(DUF2231)
DUF4029	PF13221.1	gi|385802958|ref|YP_005839358.1|	-	2.4	8.6	5.8	1.7	9.0	0.4	2.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF4029)
Fe-ADH_2	PF13685.1	gi|385802959|ref|YP_005839359.1|	-	1.9e-58	197.7	1.4	2.4e-58	197.4	0.9	1.1	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH	PF00465.14	gi|385802959|ref|YP_005839359.1|	-	3.9e-21	75.1	6.8	6.5e-21	74.3	4.7	1.3	1	1	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
DHQ_synthase	PF01761.15	gi|385802959|ref|YP_005839359.1|	-	9.7e-10	37.7	0.1	2.8e-09	36.2	0.1	1.6	1	1	0	1	1	1	1	3-dehydroquinate	synthase
LysE	PF01810.13	gi|385802960|ref|YP_005839360.1|	-	1.1e-28	99.8	12.0	4e-27	94.7	8.3	2.3	1	1	0	1	1	1	1	LysE	type	translocator
Wzy_C	PF04932.10	gi|385802960|ref|YP_005839360.1|	-	8.6	6.1	15.7	6.4	6.5	0.6	2.5	1	1	1	2	2	2	0	O-Antigen	ligase
UPF0016	PF01169.14	gi|385802961|ref|YP_005839361.1|	-	9.7e-24	83.3	17.7	2e-14	53.4	2.7	2.3	2	0	0	2	2	2	2	Uncharacterized	protein	family	UPF0016
Fe_dep_repr_C	PF02742.10	gi|385802962|ref|YP_005839362.1|	-	3.2e-27	93.9	0.1	6.5e-27	93.0	0.1	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
FeoA	PF04023.9	gi|385802962|ref|YP_005839362.1|	-	8.1e-15	54.5	0.1	2.9e-14	52.7	0.1	2.0	2	0	0	2	2	2	1	FeoA	domain
Fe_dep_repress	PF01325.14	gi|385802962|ref|YP_005839362.1|	-	1.1e-14	54.1	0.4	1.9e-14	53.3	0.3	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_15	PF12324.3	gi|385802962|ref|YP_005839362.1|	-	0.031	13.9	0.0	0.11	12.1	0.0	1.9	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	alkylmercury	lyase
Topoisom_bac	PF01131.15	gi|385802962|ref|YP_005839362.1|	-	0.037	12.8	0.1	0.056	12.2	0.1	1.2	1	0	0	1	1	1	0	DNA	topoisomerase
HrcA_DNA-bdg	PF03444.10	gi|385802962|ref|YP_005839362.1|	-	0.042	13.2	0.0	0.18	11.2	0.0	2.0	2	0	0	2	2	2	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
MarR_2	PF12802.2	gi|385802962|ref|YP_005839362.1|	-	0.085	12.5	0.1	1.6	8.4	0.0	2.6	2	1	1	3	3	3	0	MarR	family
PALP	PF00291.20	gi|385802963|ref|YP_005839363.1|	-	4.3e-57	193.6	4.8	5.1e-57	193.4	3.4	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
PK_C	PF02887.11	gi|385802963|ref|YP_005839363.1|	-	4	7.0	5.5	4.1	6.9	0.2	3.0	2	2	1	3	3	3	0	Pyruvate	kinase,	alpha/beta	domain
Amino_oxidase	PF01593.19	gi|385802964|ref|YP_005839364.1|	-	1.4e-36	126.5	0.5	4.8e-36	124.7	0.4	1.7	1	1	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.1	gi|385802964|ref|YP_005839364.1|	-	4.6e-16	58.6	0.3	1e-15	57.4	0.2	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.19	gi|385802964|ref|YP_005839364.1|	-	1.9e-14	53.3	1.1	1.1e-07	31.1	0.2	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|385802964|ref|YP_005839364.1|	-	4.5e-08	31.9	1.3	1.9e-05	23.3	0.2	2.2	2	0	0	2	2	2	2	HI0933-like	protein
Pyr_redox_2	PF07992.9	gi|385802964|ref|YP_005839364.1|	-	4.5e-07	29.9	1.8	2.8e-05	24.1	0.6	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|385802964|ref|YP_005839364.1|	-	1.2e-06	28.7	0.0	3.2e-05	24.0	0.0	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|385802964|ref|YP_005839364.1|	-	4.3e-06	25.8	2.0	8e-06	24.9	1.4	1.4	1	0	0	1	1	1	1	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|385802964|ref|YP_005839364.1|	-	1.9e-05	23.9	5.5	0.0004	19.5	2.0	2.9	3	0	0	3	3	3	1	FAD	dependent	oxidoreductase
Thi4	PF01946.12	gi|385802964|ref|YP_005839364.1|	-	2.1e-05	23.7	0.2	4e-05	22.8	0.2	1.4	1	0	0	1	1	1	1	Thi4	family
NAD_binding_9	PF13454.1	gi|385802964|ref|YP_005839364.1|	-	0.00011	21.9	3.1	0.13	12.0	0.2	2.5	2	0	0	2	2	2	2	FAD-NAD(P)-binding
GIDA	PF01134.17	gi|385802964|ref|YP_005839364.1|	-	0.00014	20.8	1.0	0.00014	20.8	0.7	2.2	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_binding_3	PF01494.14	gi|385802964|ref|YP_005839364.1|	-	0.00047	19.3	0.6	0.0012	18.0	0.4	1.7	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox	PF00070.22	gi|385802964|ref|YP_005839364.1|	-	0.00071	19.9	1.5	0.0028	18.0	0.3	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_7	PF13241.1	gi|385802964|ref|YP_005839364.1|	-	0.0021	18.2	0.8	0.024	14.8	0.0	2.4	2	0	0	2	2	2	1	Putative	NAD(P)-binding
AlaDh_PNT_C	PF01262.16	gi|385802964|ref|YP_005839364.1|	-	0.0027	17.2	0.5	0.0027	17.2	0.3	1.6	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
3HCDH_N	PF02737.13	gi|385802964|ref|YP_005839364.1|	-	0.0032	17.1	1.2	0.0065	16.1	0.9	1.5	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.18	gi|385802964|ref|YP_005839364.1|	-	0.015	15.0	0.7	0.038	13.7	0.1	1.9	2	0	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
FMO-like	PF00743.14	gi|385802964|ref|YP_005839364.1|	-	0.024	12.8	0.0	0.042	12.0	0.0	1.3	1	0	0	1	1	1	0	Flavin-binding	monooxygenase-like
Lycopene_cycl	PF05834.7	gi|385802964|ref|YP_005839364.1|	-	0.21	10.4	2.3	0.11	11.3	0.2	1.4	2	0	0	2	2	2	0	Lycopene	cyclase	protein
adh_short_C2	PF13561.1	gi|385802965|ref|YP_005839365.1|	-	1.1e-31	110.4	0.0	1.3e-31	110.2	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.20	gi|385802965|ref|YP_005839365.1|	-	1.3e-21	77.2	0.0	1.9e-21	76.7	0.0	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|385802965|ref|YP_005839365.1|	-	2.3e-09	37.2	0.0	5.1e-08	32.7	0.0	2.1	2	0	0	2	2	2	1	KR	domain
NAD_binding_10	PF13460.1	gi|385802965|ref|YP_005839365.1|	-	3.5e-06	27.1	0.1	6e-06	26.3	0.0	1.4	1	1	0	1	1	1	1	NADH(P)-binding
Epimerase	PF01370.16	gi|385802965|ref|YP_005839365.1|	-	0.00036	20.0	0.0	0.00053	19.4	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Pyr_redox	PF00070.22	gi|385802965|ref|YP_005839365.1|	-	0.014	15.8	0.1	0.031	14.6	0.1	1.6	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|385802965|ref|YP_005839365.1|	-	0.042	12.8	0.0	0.049	12.6	0.0	1.2	1	0	0	1	1	1	0	FAD	binding	domain
Metallophos_2	PF12850.2	gi|385802966|ref|YP_005839366.1|	-	4.3e-08	33.1	0.1	5.2e-08	32.8	0.1	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|385802966|ref|YP_005839366.1|	-	1e-07	31.5	0.3	2e-07	30.6	0.0	1.5	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Exo_endo_phos_2	PF14529.1	gi|385802966|ref|YP_005839366.1|	-	0.11	12.1	0.0	0.16	11.6	0.0	1.3	1	0	0	1	1	1	0	Endonuclease-reverse	transcriptase
MarR_2	PF12802.2	gi|385802967|ref|YP_005839367.1|	-	3.5e-10	39.4	0.1	9.4e-10	38.0	0.1	1.7	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|385802967|ref|YP_005839367.1|	-	4.6e-09	35.5	0.0	7.7e-09	34.8	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.17	gi|385802967|ref|YP_005839367.1|	-	1.5e-07	31.0	0.0	3.7e-07	29.7	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|385802967|ref|YP_005839367.1|	-	4e-07	30.2	0.6	1.2e-05	25.4	0.0	3.0	3	0	0	3	3	3	1	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.1	gi|385802967|ref|YP_005839367.1|	-	0.00015	21.4	0.1	0.00059	19.5	0.0	2.0	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_11	PF08279.7	gi|385802967|ref|YP_005839367.1|	-	0.00027	20.5	0.1	0.00067	19.2	0.0	1.7	2	0	0	2	2	2	1	HTH	domain
HTH_45	PF14947.1	gi|385802967|ref|YP_005839367.1|	-	0.0003	20.5	0.0	0.0007	19.3	0.0	1.7	1	1	0	1	1	1	1	Winged	helix-turn-helix
HTH_IclR	PF09339.5	gi|385802967|ref|YP_005839367.1|	-	0.00097	18.6	0.0	0.0021	17.5	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.15	gi|385802967|ref|YP_005839367.1|	-	0.0015	18.1	0.0	0.0026	17.3	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.14	gi|385802967|ref|YP_005839367.1|	-	0.0028	17.3	0.1	0.005	16.5	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|385802967|ref|YP_005839367.1|	-	0.0041	16.8	0.0	0.016	15.0	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
Rrf2	PF02082.15	gi|385802967|ref|YP_005839367.1|	-	0.01	15.9	0.0	0.034	14.2	0.0	1.8	2	0	0	2	2	1	0	Transcriptional	regulator
Fe_dep_repress	PF01325.14	gi|385802967|ref|YP_005839367.1|	-	0.01	15.7	0.0	0.02	14.7	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Mrr_N	PF14338.1	gi|385802967|ref|YP_005839367.1|	-	0.012	15.6	0.0	0.03	14.3	0.0	1.6	1	1	1	2	2	2	0	Mrr	N-terminal	domain
HTH_34	PF13601.1	gi|385802967|ref|YP_005839367.1|	-	0.046	13.7	0.0	0.093	12.7	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_23	PF13384.1	gi|385802967|ref|YP_005839367.1|	-	0.072	12.7	0.0	0.14	11.8	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
FaeA	PF04703.7	gi|385802967|ref|YP_005839367.1|	-	0.081	13.0	0.1	0.21	11.7	0.0	1.6	1	0	0	1	1	1	0	FaeA-like	protein
GntR	PF00392.16	gi|385802967|ref|YP_005839367.1|	-	0.096	12.1	0.0	0.24	10.8	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
Mnd1	PF03962.10	gi|385802967|ref|YP_005839367.1|	-	0.17	11.5	0.0	0.37	10.4	0.0	1.5	1	1	0	1	1	1	0	Mnd1	family
DnaJ	PF00226.26	gi|385802968|ref|YP_005839368.1|	-	1.5e-11	43.8	0.1	3.2e-11	42.7	0.0	1.5	1	1	1	2	2	2	1	DnaJ	domain
DUF993	PF06187.6	gi|385802968|ref|YP_005839368.1|	-	0.1	11.1	0.1	0.15	10.5	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF993)
PPDK_N	PF01326.14	gi|385802969|ref|YP_005839369.1|	-	5.6e-103	344.4	3.7	9.7e-103	343.6	2.6	1.3	1	0	0	1	1	1	1	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
PEP-utilizers_C	PF02896.13	gi|385802969|ref|YP_005839369.1|	-	1.4e-81	273.5	0.1	2.2e-81	272.9	0.1	1.2	1	0	0	1	1	1	1	PEP-utilising	enzyme,	TIM	barrel	domain
PEP-utilizers	PF00391.18	gi|385802969|ref|YP_005839369.1|	-	3.1e-26	90.7	2.7	3.8e-26	90.4	1.0	1.8	2	0	0	2	2	2	1	PEP-utilising	enzyme,	mobile	domain
AP_endonuc_2	PF01261.19	gi|385802969|ref|YP_005839369.1|	-	0.00018	20.9	0.1	0.0039	16.5	0.0	3.1	2	1	0	2	2	2	1	Xylose	isomerase-like	TIM	barrel
PEP-utilisers_N	PF05524.8	gi|385802969|ref|YP_005839369.1|	-	0.0088	15.8	0.5	1	9.1	0.0	3.0	2	0	0	2	2	2	1	PEP-utilising	enzyme,	N-terminal
SNARE_assoc	PF09335.6	gi|385802970|ref|YP_005839370.1|	-	7.7e-11	42.2	5.0	2.1e-10	40.8	3.3	1.8	1	1	1	2	2	2	1	SNARE	associated	Golgi	protein
tRNA-synt_1g	PF09334.6	gi|385802971|ref|YP_005839371.1|	-	1.6e-132	441.9	0.0	2.4e-130	434.7	0.0	2.3	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(M)
tRNA_bind	PF01588.15	gi|385802971|ref|YP_005839371.1|	-	1.9e-20	72.4	0.0	3.2e-20	71.7	0.0	1.4	1	0	0	1	1	1	1	Putative	tRNA	binding	domain
tRNA-synt_1	PF00133.17	gi|385802971|ref|YP_005839371.1|	-	1.2e-14	53.2	0.0	2e-08	32.7	0.0	3.6	3	1	0	3	3	3	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1e	PF01406.14	gi|385802971|ref|YP_005839371.1|	-	2.4e-10	40.0	0.0	3.8e-07	29.5	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
Anticodon_1	PF08264.8	gi|385802971|ref|YP_005839371.1|	-	4.1e-08	33.1	0.0	7.3e-08	32.3	0.0	1.3	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1d	PF00750.14	gi|385802971|ref|YP_005839371.1|	-	0.0011	17.8	0.5	0.13	11.0	0.1	2.4	1	1	0	2	2	2	2	tRNA	synthetases	class	I	(R)
tRNA-synt_1f	PF01921.13	gi|385802971|ref|YP_005839371.1|	-	0.011	14.3	0.0	0.25	9.9	0.0	2.6	2	1	0	3	3	3	0	tRNA	synthetases	class	I	(K)
Mpt_N	PF09176.6	gi|385802971|ref|YP_005839371.1|	-	0.041	13.7	0.0	0.097	12.5	0.0	1.6	1	0	0	1	1	1	0	Methylene-tetrahydromethanopterin	dehydrogenase,	N-terminal
PK	PF00224.16	gi|385802972|ref|YP_005839372.1|	-	1.3e-111	372.5	6.6	2.2e-111	371.8	4.6	1.3	1	0	0	1	1	1	1	Pyruvate	kinase,	barrel	domain
PK_C	PF02887.11	gi|385802972|ref|YP_005839372.1|	-	1.6e-34	117.9	0.8	4.5e-34	116.4	0.6	1.8	1	0	0	1	1	1	1	Pyruvate	kinase,	alpha/beta	domain
PEP-utilizers	PF00391.18	gi|385802972|ref|YP_005839372.1|	-	4.9e-10	38.8	0.1	4.9e-10	38.8	0.1	3.3	4	0	0	4	4	4	1	PEP-utilising	enzyme,	mobile	domain
HpcH_HpaI	PF03328.9	gi|385802972|ref|YP_005839372.1|	-	0.0069	15.2	2.3	0.017	14.0	1.3	1.8	1	1	1	2	2	2	1	HpcH/HpaI	aldolase/citrate	lyase	family
Trypan_PARP	PF05887.6	gi|385802973|ref|YP_005839373.1|	-	0.14	11.9	5.8	0.18	11.6	4.0	1.1	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
NfeD	PF01957.13	gi|385802974|ref|YP_005839374.1|	-	8.1e-13	48.7	0.5	1.2e-12	48.2	0.3	1.1	1	0	0	1	1	1	1	NfeD-like	C-terminal,	partner-binding
DUF4131	PF13567.1	gi|385802974|ref|YP_005839374.1|	-	0.16	11.3	0.8	0.23	10.8	0.6	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
DUF533	PF04391.7	gi|385802974|ref|YP_005839374.1|	-	0.16	11.2	0.0	0.16	11.2	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF533)
BNIP3	PF06553.7	gi|385802974|ref|YP_005839374.1|	-	0.9	8.8	7.2	0.083	12.2	1.7	1.6	2	0	0	2	2	2	0	BNIP3
TMEM238	PF15125.1	gi|385802974|ref|YP_005839374.1|	-	1.4	8.8	4.9	2.8	7.9	3.4	1.5	1	0	0	1	1	1	0	TMEM238	protein	family
Trypan_PARP	PF05887.6	gi|385802974|ref|YP_005839374.1|	-	2.3	8.0	10.3	3.5	7.4	7.2	1.3	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
UbiA	PF01040.13	gi|385802976|ref|YP_005839376.1|	-	2.5e-27	95.7	24.4	2.5e-27	95.7	16.9	2.5	2	1	0	2	2	2	1	UbiA	prenyltransferase	family
COX15-CtaA	PF02628.10	gi|385802976|ref|YP_005839376.1|	-	1.4e-14	53.6	10.8	1.4e-14	53.6	7.5	3.1	2	1	1	3	3	3	1	Cytochrome	oxidase	assembly	protein
COX2	PF00116.15	gi|385802977|ref|YP_005839377.1|	-	5.7e-22	77.7	2.7	3.5e-21	75.2	0.2	2.2	1	1	1	2	2	2	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
COX2_TM	PF02790.10	gi|385802977|ref|YP_005839377.1|	-	9.4e-09	35.1	0.0	1.6e-08	34.3	0.0	1.3	1	0	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	transmembrane	domain
CTP_transf_2	PF01467.21	gi|385802978|ref|YP_005839378.1|	-	2.5e-08	34.1	0.5	5.6e-08	32.9	0.3	1.8	1	1	0	1	1	1	1	Cytidylyltransferase
FAD_syn	PF06574.7	gi|385802978|ref|YP_005839378.1|	-	0.023	14.3	0.0	0.074	12.6	0.0	1.8	2	0	0	2	2	2	0	FAD	synthetase
Prok-JAB	PF14464.1	gi|385802979|ref|YP_005839379.1|	-	4e-15	55.2	0.1	8.6e-15	54.2	0.0	1.5	1	1	1	2	2	2	1	Prokaryotic	homologs	of	the	JAB	domain
JAB	PF01398.16	gi|385802979|ref|YP_005839379.1|	-	0.0053	16.4	0.7	0.014	15.1	0.0	2.0	2	1	0	2	2	2	1	JAB1/Mov34/MPN/PAD-1	ubiquitin	protease
RadC	PF04002.10	gi|385802979|ref|YP_005839379.1|	-	0.022	14.4	0.1	0.061	13.0	0.0	1.8	2	0	0	2	2	2	0	RadC-like	JAB	domain
DHH	PF01368.15	gi|385802980|ref|YP_005839380.1|	-	1.5e-08	34.3	0.0	2.8e-08	33.5	0.0	1.4	1	0	0	1	1	1	1	DHH	family
tRNA_anti-codon	PF01336.20	gi|385802980|ref|YP_005839380.1|	-	5.5e-08	32.5	0.0	1e-07	31.6	0.0	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
S1	PF00575.18	gi|385802980|ref|YP_005839380.1|	-	4.5e-05	23.4	1.6	0.00012	22.1	0.1	2.2	2	0	0	2	2	2	1	S1	RNA	binding	domain
Nitroreductase	PF00881.19	gi|385802981|ref|YP_005839381.1|	-	1.5e-23	83.4	0.0	1.8e-23	83.1	0.0	1.1	1	0	0	1	1	1	1	Nitroreductase	family
Sigma70_r4_2	PF08281.7	gi|385802981|ref|YP_005839381.1|	-	0.071	12.5	0.0	0.13	11.7	0.0	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
PLDc_2	PF13091.1	gi|385802982|ref|YP_005839382.1|	-	4.5e-33	113.6	0.0	2.5e-17	62.8	0.0	2.3	2	0	0	2	2	2	2	PLD-like	domain
PLDc	PF00614.17	gi|385802982|ref|YP_005839382.1|	-	5.7e-06	25.9	0.6	4.1e-05	23.2	0.1	2.5	2	0	0	2	2	2	1	Phospholipase	D	Active	site	motif
DUF1669	PF07894.7	gi|385802982|ref|YP_005839382.1|	-	0.076	12.1	0.0	0.42	9.7	0.0	2.1	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1669)
SDP_N	PF12278.3	gi|385802982|ref|YP_005839382.1|	-	0.24	10.9	0.0	0.4	10.3	0.0	1.2	1	0	0	1	1	1	0	Sex	determination	protein	N	terminal
HEAT_2	PF13646.1	gi|385802983|ref|YP_005839383.1|	-	3.4e-20	72.1	3.1	6.5e-12	45.5	1.2	3.6	1	1	2	3	3	3	2	HEAT	repeats
HEAT_PBS	PF03130.11	gi|385802983|ref|YP_005839383.1|	-	5.7e-13	48.0	10.4	0.006	16.9	0.1	6.4	6	1	0	6	6	6	3	PBS	lyase	HEAT-like	repeat
HEAT_EZ	PF13513.1	gi|385802983|ref|YP_005839383.1|	-	1.7e-08	34.6	0.4	8.6e-05	22.9	0.6	4.0	3	1	1	4	4	4	1	HEAT-like	repeat
HEAT	PF02985.17	gi|385802983|ref|YP_005839383.1|	-	5.7e-05	22.8	0.0	0.009	16.0	0.0	4.0	4	0	0	4	4	4	1	HEAT	repeat
Arm	PF00514.18	gi|385802983|ref|YP_005839383.1|	-	0.00032	20.3	0.0	0.05	13.4	0.0	3.2	3	1	0	3	3	3	1	Armadillo/beta-catenin-like	repeat
DNA_alkylation	PF08713.6	gi|385802983|ref|YP_005839383.1|	-	0.02	14.3	0.5	0.083	12.3	0.0	2.2	2	0	0	2	2	2	0	DNA	alkylation	repair	enzyme
IncA	PF04156.9	gi|385802983|ref|YP_005839383.1|	-	0.12	11.9	1.7	0.2	11.2	0.2	2.0	2	0	0	2	2	2	0	IncA	protein
HSBP1	PF06825.7	gi|385802983|ref|YP_005839383.1|	-	0.14	11.7	1.9	19	4.9	0.2	3.1	2	0	0	2	2	2	0	Heat	shock	factor	binding	protein	1
Peripla_BP_2	PF01497.13	gi|385802984|ref|YP_005839384.1|	-	4.3e-27	94.7	0.1	5.7e-27	94.3	0.0	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
Ferritin	PF00210.19	gi|385802985|ref|YP_005839385.1|	-	1.1e-27	96.5	2.1	1.2e-27	96.3	1.5	1.0	1	0	0	1	1	1	1	Ferritin-like	domain
DUF2383	PF09537.5	gi|385802985|ref|YP_005839385.1|	-	0.00047	20.3	1.1	0.018	15.2	0.1	2.3	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF2383)
DUF4003	PF13170.1	gi|385802985|ref|YP_005839385.1|	-	0.012	14.8	0.2	0.021	14.1	0.0	1.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4003)
DUF892	PF05974.7	gi|385802985|ref|YP_005839385.1|	-	0.033	14.0	1.4	0.31	10.8	0.0	2.3	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF892)
DUF4525	PF15027.1	gi|385802987|ref|YP_005839387.1|	-	0.13	11.7	0.2	0.35	10.3	0.1	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4525)
DUF35	PF01796.12	gi|385802988|ref|YP_005839388.1|	-	4.7e-06	26.7	0.5	7.4e-06	26.1	0.4	1.3	1	0	0	1	1	1	1	DUF35	OB-fold	domain
Thiolase_C	PF02803.13	gi|385802989|ref|YP_005839389.1|	-	3.8e-08	32.7	0.1	1.1e-07	31.3	0.0	1.7	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
Thiolase_N	PF00108.18	gi|385802989|ref|YP_005839389.1|	-	8.6e-05	21.6	0.1	0.00016	20.8	0.1	1.4	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
Ketoacyl-synt_C	PF02801.17	gi|385802989|ref|YP_005839389.1|	-	0.0013	18.5	0.9	4.7	7.0	0.0	3.3	3	0	0	3	3	3	2	Beta-ketoacyl	synthase,	C-terminal	domain
DUF1576	PF07613.6	gi|385802990|ref|YP_005839390.1|	-	0.0099	15.4	5.4	0.012	15.1	3.7	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1576)
FixH	PF05751.6	gi|385802990|ref|YP_005839390.1|	-	0.065	13.0	0.2	0.14	11.9	0.2	1.5	1	0	0	1	1	1	0	FixH
Imm_superinfect	PF14373.1	gi|385802990|ref|YP_005839390.1|	-	0.18	11.4	4.8	8.3	6.1	0.1	3.6	3	0	0	3	3	3	0	Superinfection	immunity	protein
OapA_N	PF08525.6	gi|385802990|ref|YP_005839390.1|	-	0.48	10.2	2.2	11	5.8	0.0	2.9	2	0	0	2	2	2	0	Opacity-associated	protein	A	N-terminal	motif
Pyr_redox_2	PF07992.9	gi|385802991|ref|YP_005839391.1|	-	2.2e-22	79.9	0.0	2.9e-22	79.5	0.0	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|385802991|ref|YP_005839391.1|	-	3.4e-07	29.4	1.9	0.00013	21.0	0.8	2.2	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|385802991|ref|YP_005839391.1|	-	2.6e-06	26.5	1.9	0.0005	19.0	0.5	2.3	2	0	0	2	2	2	2	FAD	binding	domain
Pyr_redox_3	PF13738.1	gi|385802991|ref|YP_005839391.1|	-	1.5e-05	25.1	0.1	0.041	13.9	0.4	2.2	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|385802991|ref|YP_005839391.1|	-	2.5e-05	23.3	0.5	0.00023	20.1	0.3	2.0	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
Pyr_redox	PF00070.22	gi|385802991|ref|YP_005839391.1|	-	4.3e-05	23.8	0.1	0.0054	17.1	0.1	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|385802991|ref|YP_005839391.1|	-	0.00033	19.2	0.2	0.0034	15.9	0.2	2.1	2	0	0	2	2	2	1	HI0933-like	protein
FAD_oxidored	PF12831.2	gi|385802991|ref|YP_005839391.1|	-	0.00069	18.8	0.7	0.00069	18.8	0.5	1.7	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|385802991|ref|YP_005839391.1|	-	0.0014	17.7	0.4	0.0024	16.9	0.3	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Thi4	PF01946.12	gi|385802991|ref|YP_005839391.1|	-	0.0048	16.0	0.1	0.01	14.9	0.1	1.5	1	0	0	1	1	1	1	Thi4	family
NAD_binding_8	PF13450.1	gi|385802991|ref|YP_005839391.1|	-	0.0078	16.2	0.9	0.013	15.5	0.2	1.8	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
NAD_binding_9	PF13454.1	gi|385802991|ref|YP_005839391.1|	-	0.014	15.1	0.1	0.27	11.0	0.0	2.3	2	0	0	2	2	2	0	FAD-NAD(P)-binding
K_oxygenase	PF13434.1	gi|385802991|ref|YP_005839391.1|	-	0.048	12.5	0.0	0.16	10.8	0.0	1.7	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
AlaDh_PNT_C	PF01262.16	gi|385802991|ref|YP_005839391.1|	-	0.094	12.2	0.1	0.19	11.2	0.1	1.5	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Peptidase_S24	PF00717.18	gi|385802993|ref|YP_005839393.1|	-	0.0011	18.6	0.0	0.0059	16.2	0.0	2.3	3	0	0	3	3	3	1	Peptidase	S24-like
DUF756	PF05506.7	gi|385802994|ref|YP_005839394.1|	-	0.73	10.3	0.0	0.73	10.3	0.0	4.4	5	0	0	5	5	5	0	Domain	of	unknown	function	(DUF756)
TRAP_beta	PF05753.9	gi|385802994|ref|YP_005839394.1|	-	1.8	7.6	6.5	4.5	6.3	0.0	3.9	4	0	0	4	4	4	0	Translocon-associated	protein	beta	(TRAPB)
DUF2393	PF09624.5	gi|385802995|ref|YP_005839395.1|	-	0.0002	20.8	0.0	0.057	12.9	0.0	2.7	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF2393)
Peptidase_M73	PF12389.3	gi|385802995|ref|YP_005839395.1|	-	0.0032	16.9	0.1	0.4	10.1	0.0	2.7	2	0	0	2	2	2	1	Camelysin	metallo-endopeptidase
DUF1102	PF06510.6	gi|385802995|ref|YP_005839395.1|	-	0.011	15.4	2.1	0.025	14.3	0.5	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1102)
Kelch_1	PF01344.20	gi|385802995|ref|YP_005839395.1|	-	0.014	14.9	0.2	0.037	13.5	0.1	1.7	1	0	0	1	1	1	0	Kelch	motif
Transglut_C	PF00927.17	gi|385802995|ref|YP_005839395.1|	-	0.03	14.3	0.2	10	6.1	0.0	3.6	3	0	0	3	3	3	0	Transglutaminase	family,	C-terminal	ig	like	domain
LRR_6	PF13516.1	gi|385802996|ref|YP_005839396.1|	-	0.19	11.8	1.5	1.6	9.0	0.2	3.4	3	0	0	3	3	3	0	Leucine	Rich	repeat
Methyltransf_11	PF08241.7	gi|385802999|ref|YP_005839399.1|	-	4.2e-16	59.2	0.0	6.4e-16	58.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|385802999|ref|YP_005839399.1|	-	6e-13	49.0	0.0	1.1e-12	48.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|385802999|ref|YP_005839399.1|	-	1.7e-12	47.1	0.0	2.4e-12	46.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|385802999|ref|YP_005839399.1|	-	7.6e-11	42.5	0.1	1.1e-10	42.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|385802999|ref|YP_005839399.1|	-	2.7e-10	40.6	0.0	4.6e-10	39.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|385802999|ref|YP_005839399.1|	-	4.7e-08	32.4	0.0	6e-08	32.0	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_26	PF13659.1	gi|385802999|ref|YP_005839399.1|	-	7.1e-07	29.2	0.1	1.2e-06	28.5	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|385802999|ref|YP_005839399.1|	-	1.5e-06	28.0	0.0	1.8e-06	27.7	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_4	PF02390.12	gi|385802999|ref|YP_005839399.1|	-	1.6e-05	24.0	0.0	2.5e-05	23.4	0.0	1.3	1	0	0	1	1	1	1	Putative	methyltransferase
UPF0020	PF01170.13	gi|385802999|ref|YP_005839399.1|	-	0.0032	17.0	0.0	0.0046	16.5	0.0	1.2	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_32	PF13679.1	gi|385802999|ref|YP_005839399.1|	-	0.0044	16.7	0.0	0.0071	16.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.15	gi|385802999|ref|YP_005839399.1|	-	0.0048	15.9	0.0	0.0071	15.4	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_8	PF05148.10	gi|385802999|ref|YP_005839399.1|	-	0.012	15.2	0.0	0.18	11.4	0.0	2.0	1	1	0	1	1	1	0	Hypothetical	methyltransferase
MTS	PF05175.9	gi|385802999|ref|YP_005839399.1|	-	0.021	14.2	0.0	0.031	13.6	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_5	PF01795.14	gi|385802999|ref|YP_005839399.1|	-	0.07	12.3	0.0	0.13	11.5	0.0	1.4	2	0	0	2	2	2	0	MraW	methylase	family
DUF633	PF04816.7	gi|385802999|ref|YP_005839399.1|	-	0.072	12.4	0.0	0.11	11.8	0.0	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF633)
Zn_Tnp_IS1595	PF12760.2	gi|385803000|ref|YP_005839400.1|	-	0.00078	19.1	0.1	1.2	9.0	0.0	2.1	2	0	0	2	2	2	2	Transposase	zinc-ribbon	domain
Rubredoxin	PF00301.15	gi|385803000|ref|YP_005839400.1|	-	0.0052	16.6	0.6	1.6	8.6	0.1	2.2	2	0	0	2	2	2	2	Rubredoxin
zf-TFIIB	PF13453.1	gi|385803000|ref|YP_005839400.1|	-	0.0057	15.8	0.4	0.021	14.0	0.3	1.8	1	1	0	1	1	1	1	Transcription	factor	zinc-finger
TF_Zn_Ribbon	PF08271.7	gi|385803000|ref|YP_005839400.1|	-	0.0075	15.5	1.8	0.12	11.7	0.1	2.2	2	0	0	2	2	2	1	TFIIB	zinc-binding
zf-ISL3	PF14690.1	gi|385803000|ref|YP_005839400.1|	-	0.011	15.7	0.6	3.7	7.6	0.1	2.2	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DZR	PF12773.2	gi|385803000|ref|YP_005839400.1|	-	0.028	14.2	0.6	0.1	12.4	0.4	1.8	1	1	0	1	1	1	0	Double	zinc	ribbon
Methyltransf_13	PF08421.6	gi|385803000|ref|YP_005839400.1|	-	0.031	13.7	0.2	0.15	11.5	0.0	1.9	2	0	0	2	2	2	0	Putative	zinc	binding	domain
zf-C4_Topoisom	PF01396.14	gi|385803000|ref|YP_005839400.1|	-	0.032	13.7	0.9	5.3	6.6	0.1	2.2	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Zn-ribbon_8	PF09723.5	gi|385803000|ref|YP_005839400.1|	-	0.035	14.0	1.7	5.1	7.1	0.2	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-Mss51	PF13824.1	gi|385803000|ref|YP_005839400.1|	-	0.036	13.9	0.7	0.14	12.0	0.5	1.8	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-IS66	PF13005.2	gi|385803000|ref|YP_005839400.1|	-	0.045	13.7	0.8	1.4	8.9	0.1	2.3	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-ribbon_3	PF13248.1	gi|385803000|ref|YP_005839400.1|	-	0.046	12.9	0.5	4.1	6.7	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF1936	PF09151.5	gi|385803000|ref|YP_005839400.1|	-	0.08	12.4	0.1	1.1	8.8	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1936)
UPF0547	PF10571.4	gi|385803000|ref|YP_005839400.1|	-	0.094	12.4	2.6	4.3	7.1	0.1	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
PhnA_Zn_Ribbon	PF08274.7	gi|385803000|ref|YP_005839400.1|	-	0.21	11.4	1.5	3.6	7.4	0.1	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
zinc_ribbon_2	PF13240.1	gi|385803000|ref|YP_005839400.1|	-	0.35	10.4	1.9	7.3	6.2	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF1610	PF07754.6	gi|385803000|ref|YP_005839400.1|	-	0.36	10.9	0.2	0.36	10.9	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
A2L_zn_ribbon	PF08792.5	gi|385803000|ref|YP_005839400.1|	-	0.62	9.5	2.5	15	5.2	0.1	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zf-NADH-PPase	PF09297.6	gi|385803000|ref|YP_005839400.1|	-	1.1	8.8	3.6	19	4.8	0.6	2.3	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
FYDLN_acid	PF09538.5	gi|385803001|ref|YP_005839401.1|	-	0.1	13.1	4.7	0.15	12.6	3.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(FYDLN_acid)
TP_methylase	PF00590.15	gi|385803002|ref|YP_005839402.1|	-	6.3e-20	71.7	1.0	6.3e-20	71.7	0.7	1.6	2	0	0	2	2	2	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Exosortase_EpsH	PF09721.5	gi|385803003|ref|YP_005839403.1|	-	8.3e-53	179.2	26.7	1e-52	178.9	18.5	1.0	1	0	0	1	1	1	1	Transmembrane	exosortase	(Exosortase_EpsH)
PgaD	PF13994.1	gi|385803003|ref|YP_005839403.1|	-	1.6	8.2	5.9	0.24	10.8	0.8	2.2	2	1	0	2	2	2	0	PgaD-like	protein
Glyoxalase_2	PF12681.2	gi|385803004|ref|YP_005839404.1|	-	5.1e-25	88.1	4.9	6.7e-15	55.6	0.1	2.1	2	0	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase	PF00903.20	gi|385803004|ref|YP_005839404.1|	-	2.6e-17	63.0	4.0	7.3e-12	45.3	0.2	2.7	2	1	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.1	gi|385803004|ref|YP_005839404.1|	-	3.7e-14	52.6	4.1	8.1e-06	25.8	0.2	3.6	2	2	2	4	4	4	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.1	gi|385803004|ref|YP_005839404.1|	-	2.2e-05	24.4	2.2	0.051	13.4	0.1	3.8	2	2	0	2	2	2	2	Glyoxalase-like	domain
Fis1_TPR_N	PF14852.1	gi|385803005|ref|YP_005839405.1|	-	0.059	12.6	0.0	0.63	9.3	0.0	2.2	2	0	0	2	2	2	0	Fis1	N-terminal	tetratricopeptide	repeat
MMR_HSR1	PF01926.18	gi|385803006|ref|YP_005839406.1|	-	1.1e-20	73.7	0.0	2.2e-20	72.7	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.13	gi|385803006|ref|YP_005839406.1|	-	2.4e-13	49.6	0.8	1.3e-12	47.3	0.0	2.2	2	0	0	2	2	2	1	Ferrous	iron	transport	protein	B
TGS	PF02824.16	gi|385803006|ref|YP_005839406.1|	-	2.6e-12	46.3	0.0	5e-12	45.4	0.0	1.5	1	0	0	1	1	1	1	TGS	domain
Dynamin_N	PF00350.18	gi|385803006|ref|YP_005839406.1|	-	0.00034	20.4	0.0	0.56	9.9	0.1	2.5	1	1	1	2	2	2	2	Dynamin	family
AIG1	PF04548.11	gi|385803006|ref|YP_005839406.1|	-	0.00046	19.3	0.1	0.00093	18.3	0.0	1.6	2	0	0	2	2	2	1	AIG1	family
DUF258	PF03193.11	gi|385803006|ref|YP_005839406.1|	-	0.0047	16.1	0.0	0.027	13.6	0.0	2.4	3	0	0	3	3	3	1	Protein	of	unknown	function,	DUF258
ArgK	PF03308.11	gi|385803006|ref|YP_005839406.1|	-	0.0047	15.7	0.1	0.02	13.6	0.0	2.0	2	0	0	2	2	2	1	ArgK	protein
Miro	PF08477.8	gi|385803006|ref|YP_005839406.1|	-	0.0072	16.8	0.0	0.025	15.0	0.0	2.0	2	1	0	2	2	1	1	Miro-like	protein
GTP_EFTU	PF00009.22	gi|385803006|ref|YP_005839406.1|	-	0.021	14.2	0.1	1.2	8.5	0.0	3.0	2	1	1	3	3	3	0	Elongation	factor	Tu	GTP	binding	domain
cobW	PF02492.14	gi|385803006|ref|YP_005839406.1|	-	0.027	13.9	0.4	2.7	7.3	0.0	2.7	3	0	0	3	3	3	0	CobW/HypB/UreG,	nucleotide-binding	domain
Arf	PF00025.16	gi|385803006|ref|YP_005839406.1|	-	0.047	12.9	0.1	0.22	10.7	0.0	2.1	2	1	0	2	2	2	0	ADP-ribosylation	factor	family
MobB	PF03205.9	gi|385803006|ref|YP_005839406.1|	-	0.057	13.1	0.0	0.12	12.0	0.0	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
ATP_bind_1	PF03029.12	gi|385803006|ref|YP_005839406.1|	-	0.066	12.7	0.0	8.9	5.7	0.0	2.4	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
PduV-EutP	PF10662.4	gi|385803006|ref|YP_005839406.1|	-	0.13	11.7	0.0	1.3	8.5	0.0	2.2	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
DUF4173	PF13777.1	gi|385803008|ref|YP_005839408.1|	-	0.019	14.2	2.5	0.024	13.9	1.7	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4173)
Cyt_c_ox_IV	PF12270.3	gi|385803008|ref|YP_005839408.1|	-	0.041	13.6	0.3	0.041	13.6	0.2	2.2	1	1	1	2	2	2	0	Cytochrome	c	oxidase	subunit	IV
DUF4345	PF14248.1	gi|385803008|ref|YP_005839408.1|	-	0.059	12.8	10.2	0.094	12.1	7.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4345)
Peptidase_A8	PF01252.13	gi|385803008|ref|YP_005839408.1|	-	0.31	10.6	2.3	0.35	10.4	1.3	1.3	1	1	0	1	1	1	0	Signal	peptidase	(SPase)	II
DUF3325	PF11804.3	gi|385803008|ref|YP_005839408.1|	-	0.9	9.5	11.3	1.2	9.1	7.8	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3325)
Wzy_C	PF04932.10	gi|385803008|ref|YP_005839408.1|	-	4.4	7.0	6.0	7.4	6.3	4.2	1.5	1	1	0	1	1	1	0	O-Antigen	ligase
AzlD	PF05437.7	gi|385803009|ref|YP_005839409.1|	-	0.036	14.0	1.2	0.045	13.6	0.8	1.2	1	0	0	1	1	1	0	Branched-chain	amino	acid	transport	protein	(AzlD)
DUF4131	PF13567.1	gi|385803009|ref|YP_005839409.1|	-	0.064	12.6	0.0	0.073	12.4	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
COX1	PF00115.15	gi|385803010|ref|YP_005839410.1|	-	2e-156	521.1	59.8	3e-156	520.5	41.4	1.2	1	0	0	1	1	1	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
Pex14_N	PF04695.8	gi|385803011|ref|YP_005839411.1|	-	0.00017	21.6	2.4	0.00022	21.2	1.7	1.1	1	0	0	1	1	1	1	Peroxisomal	membrane	anchor	protein	(Pex14p)	conserved	region
Sporozoite_P67	PF05642.6	gi|385803011|ref|YP_005839411.1|	-	0.03	12.2	0.4	0.033	12.0	0.3	1.0	1	0	0	1	1	1	0	Sporozoite	P67	surface	antigen
PrgI	PF12666.2	gi|385803011|ref|YP_005839411.1|	-	0.059	13.5	1.7	0.089	12.9	0.9	1.4	1	1	0	1	1	1	0	PrgI	family	protein
DUF4366	PF14283.1	gi|385803011|ref|YP_005839411.1|	-	0.059	12.7	0.1	0.084	12.2	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4366)
FtsX	PF02687.16	gi|385803011|ref|YP_005839411.1|	-	0.91	9.2	7.6	1.3	8.7	5.2	1.2	1	0	0	1	1	1	0	FtsX-like	permease	family
Usp	PF00582.21	gi|385803012|ref|YP_005839412.1|	-	6.1e-22	78.3	0.3	7.2e-22	78.1	0.2	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Thioredoxin	PF00085.15	gi|385803013|ref|YP_005839413.1|	-	1.3e-10	40.9	0.0	2.2e-10	40.1	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin
Methyltransf_22	PF13383.1	gi|385803013|ref|YP_005839413.1|	-	0.032	13.7	0.3	0.47	9.9	0.0	2.1	1	1	1	2	2	2	0	Methyltransferase	domain
ABC_tran	PF00005.22	gi|385803014|ref|YP_005839414.1|	-	1.3e-29	103.2	0.0	2.1e-29	102.5	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385803014|ref|YP_005839414.1|	-	5.7e-08	33.0	0.1	0.0099	15.8	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
SbcCD_C	PF13558.1	gi|385803014|ref|YP_005839414.1|	-	0.00058	19.7	0.3	0.0037	17.1	0.2	2.2	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_23	PF13476.1	gi|385803014|ref|YP_005839414.1|	-	0.00087	19.6	0.0	0.0014	18.9	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|385803014|ref|YP_005839414.1|	-	0.0033	17.1	0.4	0.73	9.6	0.1	2.5	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_22	PF13401.1	gi|385803014|ref|YP_005839414.1|	-	0.0046	17.1	0.3	0.24	11.5	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.1	gi|385803014|ref|YP_005839414.1|	-	0.0063	15.9	0.8	0.14	11.5	0.6	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_13	PF13166.1	gi|385803014|ref|YP_005839414.1|	-	0.0073	14.8	0.2	0.056	11.9	0.0	2.2	2	1	1	3	3	3	1	AAA	domain
AAA_29	PF13555.1	gi|385803014|ref|YP_005839414.1|	-	0.012	15.1	0.0	0.025	14.1	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.14	gi|385803014|ref|YP_005839414.1|	-	0.019	14.2	0.3	0.69	9.1	0.2	2.1	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
UPF0079	PF02367.12	gi|385803014|ref|YP_005839414.1|	-	0.019	14.5	0.0	0.035	13.7	0.0	1.4	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
ABC_ATPase	PF09818.4	gi|385803014|ref|YP_005839414.1|	-	0.057	11.9	0.8	4.4	5.7	0.0	2.4	3	0	0	3	3	3	0	Predicted	ATPase	of	the	ABC	class
AAA_16	PF13191.1	gi|385803014|ref|YP_005839414.1|	-	0.089	12.7	0.7	0.28	11.1	0.1	1.9	2	0	0	2	2	2	0	AAA	ATPase	domain
Miro	PF08477.8	gi|385803014|ref|YP_005839414.1|	-	0.11	12.9	0.0	0.31	11.5	0.0	1.7	1	0	0	1	1	1	0	Miro-like	protein
DUF258	PF03193.11	gi|385803014|ref|YP_005839414.1|	-	0.12	11.5	0.0	0.2	10.8	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
SRP54	PF00448.17	gi|385803014|ref|YP_005839414.1|	-	0.12	11.7	0.2	0.31	10.4	0.1	1.7	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
NACHT	PF05729.7	gi|385803014|ref|YP_005839414.1|	-	0.14	11.8	0.2	0.49	10.0	0.0	1.8	2	0	0	2	2	2	0	NACHT	domain
NB-ARC	PF00931.17	gi|385803014|ref|YP_005839414.1|	-	0.14	10.9	0.0	0.25	10.1	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_30	PF13604.1	gi|385803014|ref|YP_005839414.1|	-	0.22	11.1	0.1	0.22	11.1	0.1	1.8	3	0	0	3	3	3	0	AAA	domain
ABC_tran	PF00005.22	gi|385803015|ref|YP_005839415.1|	-	2.8e-30	105.4	0.0	3.7e-30	105.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
BCA_ABC_TP_C	PF12399.3	gi|385803015|ref|YP_005839415.1|	-	7.5e-12	44.6	0.8	1.6e-11	43.6	0.5	1.5	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_21	PF13304.1	gi|385803015|ref|YP_005839415.1|	-	1.1e-07	32.1	0.3	0.0019	18.2	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|385803015|ref|YP_005839415.1|	-	4.8e-06	26.0	0.0	8.5e-06	25.2	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
MMR_HSR1	PF01926.18	gi|385803015|ref|YP_005839415.1|	-	0.00042	20.2	0.2	0.0017	18.3	0.2	2.0	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_16	PF13191.1	gi|385803015|ref|YP_005839415.1|	-	0.00061	19.8	0.1	0.025	14.5	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
DUF258	PF03193.11	gi|385803015|ref|YP_005839415.1|	-	0.00062	18.9	0.0	0.00099	18.3	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_23	PF13476.1	gi|385803015|ref|YP_005839415.1|	-	0.0064	16.8	0.0	0.0095	16.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|385803015|ref|YP_005839415.1|	-	0.0068	17.2	0.0	0.021	15.6	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.1	gi|385803015|ref|YP_005839415.1|	-	0.01	14.9	0.1	0.17	10.9	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_22	PF13401.1	gi|385803015|ref|YP_005839415.1|	-	0.049	13.7	0.0	0.089	12.9	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|385803015|ref|YP_005839415.1|	-	0.052	12.9	0.0	0.094	12.1	0.0	1.4	1	0	0	1	1	1	0	AAA-like	domain
AAA_19	PF13245.1	gi|385803015|ref|YP_005839415.1|	-	0.054	13.2	0.0	0.1	12.3	0.0	1.5	1	0	0	1	1	1	0	Part	of	AAA	domain
DUF87	PF01935.12	gi|385803015|ref|YP_005839415.1|	-	0.057	13.2	0.0	0.1	12.3	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF87
SMC_N	PF02463.14	gi|385803015|ref|YP_005839415.1|	-	0.063	12.5	0.5	0.13	11.4	0.3	1.8	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
RNA_helicase	PF00910.17	gi|385803015|ref|YP_005839415.1|	-	0.066	13.3	0.0	0.11	12.7	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
Zeta_toxin	PF06414.7	gi|385803015|ref|YP_005839415.1|	-	0.079	12.0	0.0	0.14	11.1	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA	PF00004.24	gi|385803015|ref|YP_005839415.1|	-	0.086	13.0	0.0	0.21	11.7	0.0	1.7	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_13	PF13166.1	gi|385803015|ref|YP_005839415.1|	-	0.19	10.1	0.0	0.24	9.8	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
BPD_transp_2	PF02653.11	gi|385803016|ref|YP_005839416.1|	-	2.6e-35	121.7	38.1	3.4e-35	121.3	25.9	1.5	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.11	gi|385803017|ref|YP_005839417.1|	-	1.8e-31	109.1	37.4	2.4e-31	108.6	25.9	1.2	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
Peripla_BP_6	PF13458.1	gi|385803018|ref|YP_005839418.1|	-	2.9e-59	201.1	9.3	3.7e-59	200.7	6.5	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
Peripla_BP_5	PF13433.1	gi|385803018|ref|YP_005839418.1|	-	1e-19	70.5	0.2	1.5e-19	70.0	0.1	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein	domain
ANF_receptor	PF01094.23	gi|385803018|ref|YP_005839418.1|	-	2.6e-09	36.3	0.8	4.2e-09	35.6	0.5	1.3	1	0	0	1	1	1	1	Receptor	family	ligand	binding	region
TAT_signal	PF10518.4	gi|385803018|ref|YP_005839418.1|	-	1.2	9.3	8.6	16	5.8	5.9	2.7	1	1	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Acetyltransf_1	PF00583.19	gi|385803019|ref|YP_005839419.1|	-	4.4e-13	49.0	0.0	7.7e-13	48.2	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|385803019|ref|YP_005839419.1|	-	3.7e-09	36.7	0.1	9.2e-09	35.4	0.0	1.7	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|385803019|ref|YP_005839419.1|	-	1.2e-08	34.9	0.0	2.4e-08	34.0	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|385803019|ref|YP_005839419.1|	-	1.2e-05	25.3	0.0	1.9e-05	24.6	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|385803019|ref|YP_005839419.1|	-	0.00023	20.8	0.0	0.00047	19.8	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_3	PF13302.1	gi|385803019|ref|YP_005839419.1|	-	0.001	19.2	0.0	0.0016	18.6	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|385803019|ref|YP_005839419.1|	-	0.028	14.2	0.1	0.15	11.9	0.0	2.2	2	1	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
Polyketide_cyc2	PF10604.4	gi|385803020|ref|YP_005839420.1|	-	0.0021	18.2	1.9	0.0027	17.8	1.2	1.3	1	1	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Thioredoxin_4	PF13462.1	gi|385803021|ref|YP_005839421.1|	-	1.1e-16	61.2	0.0	1.4e-16	60.9	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|385803021|ref|YP_005839421.1|	-	6.5e-06	26.3	0.0	1.9e-05	24.7	0.0	1.7	1	1	0	1	1	1	1	Thioredoxin-like	domain
DSBA	PF01323.15	gi|385803021|ref|YP_005839421.1|	-	0.0028	17.2	0.1	0.014	14.9	0.1	1.9	2	0	0	2	2	2	1	DSBA-like	thioredoxin	domain
Thioredoxin	PF00085.15	gi|385803021|ref|YP_005839421.1|	-	0.13	11.9	0.0	8.4	6.1	0.0	2.3	2	0	0	2	2	2	0	Thioredoxin
Met_10	PF02475.11	gi|385803023|ref|YP_005839423.1|	-	1.2e-55	188.2	0.0	1.6e-55	187.8	0.0	1.2	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_26	PF13659.1	gi|385803023|ref|YP_005839423.1|	-	1.5e-09	37.9	0.0	3e-09	36.9	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|385803023|ref|YP_005839423.1|	-	1.6e-07	31.8	0.1	4.3e-07	30.5	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
MTS	PF05175.9	gi|385803023|ref|YP_005839423.1|	-	3.1e-07	29.9	0.0	5.1e-07	29.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_15	PF09445.5	gi|385803023|ref|YP_005839423.1|	-	1e-06	28.4	0.0	1.5e-06	27.8	0.0	1.3	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_31	PF13847.1	gi|385803023|ref|YP_005839423.1|	-	4.3e-06	26.3	0.0	8.5e-06	25.4	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|385803023|ref|YP_005839423.1|	-	0.00013	21.6	0.0	0.00023	20.7	0.0	1.3	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Cons_hypoth95	PF03602.10	gi|385803023|ref|YP_005839423.1|	-	0.00014	21.2	0.0	0.0003	20.2	0.0	1.5	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
tRNA_U5-meth_tr	PF05958.6	gi|385803023|ref|YP_005839423.1|	-	0.00054	18.7	0.0	0.00084	18.1	0.0	1.2	1	0	0	1	1	1	1	tRNA	(Uracil-5-)-methyltransferase
RrnaAD	PF00398.15	gi|385803023|ref|YP_005839423.1|	-	0.0017	17.4	0.0	0.0026	16.8	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
PrmA	PF06325.8	gi|385803023|ref|YP_005839423.1|	-	0.0044	16.1	0.1	0.0084	15.2	0.1	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
DNA_methylase	PF00145.12	gi|385803023|ref|YP_005839423.1|	-	0.01	14.9	0.0	0.016	14.3	0.0	1.3	1	0	0	1	1	1	0	C-5	cytosine-specific	DNA	methylase
Methyltransf_23	PF13489.1	gi|385803023|ref|YP_005839423.1|	-	0.018	14.8	0.0	0.034	13.8	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|385803023|ref|YP_005839423.1|	-	0.031	14.7	0.0	0.073	13.5	0.0	1.7	1	0	0	1	1	1	0	Methyltransferase	domain
TRM	PF02005.11	gi|385803023|ref|YP_005839423.1|	-	0.13	11.1	1.0	0.78	8.5	0.2	2.0	1	1	1	2	2	2	0	N2,N2-dimethylguanosine	tRNA	methyltransferase
TFIIB	PF00382.14	gi|385803024|ref|YP_005839424.1|	-	3.5e-37	126.0	0.1	8e-19	67.2	0.0	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|385803024|ref|YP_005839424.1|	-	6e-19	67.0	3.6	1.4e-18	65.9	2.5	1.7	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cyclin_C	PF02984.14	gi|385803024|ref|YP_005839424.1|	-	0.0021	17.9	0.0	0.026	14.4	0.0	2.2	1	1	0	2	2	2	1	Cyclin,	C-terminal	domain
Cyclin_N	PF00134.18	gi|385803024|ref|YP_005839424.1|	-	0.004	16.7	0.0	0.06	12.9	0.0	2.2	2	0	0	2	2	2	1	Cyclin,	N-terminal	domain
HTH_Tnp_ISL3	PF13542.1	gi|385803024|ref|YP_005839424.1|	-	0.0056	15.8	0.3	2	7.6	0.0	2.5	2	0	0	2	2	2	2	Helix-turn-helix	domain	of	transposase	family	ISL3
Sigma70_r4_2	PF08281.7	gi|385803024|ref|YP_005839424.1|	-	0.01	15.2	0.0	0.036	13.5	0.0	2.0	1	0	0	1	1	1	0	Sigma-70,	region	4
Sigma70_r4	PF04545.11	gi|385803024|ref|YP_005839424.1|	-	0.012	14.9	0.1	0.18	11.1	0.0	2.6	2	0	0	2	2	2	0	Sigma-70,	region	4
RRN7	PF11781.3	gi|385803024|ref|YP_005839424.1|	-	0.025	14.0	0.6	0.05	13.1	0.4	1.5	1	0	0	1	1	1	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
Zn_Tnp_IS1	PF03811.8	gi|385803024|ref|YP_005839424.1|	-	0.03	13.8	0.9	0.055	12.9	0.1	1.9	2	0	0	2	2	1	0	InsA	N-terminal	domain
zf-ribbon_3	PF13248.1	gi|385803024|ref|YP_005839424.1|	-	0.039	13.1	0.3	0.066	12.4	0.2	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|385803024|ref|YP_005839424.1|	-	0.06	13.6	1.1	0.06	13.6	0.8	2.2	3	0	0	3	3	1	0	Restriction	alleviation	protein	Lar
Ribosomal_S27e	PF01667.12	gi|385803024|ref|YP_005839424.1|	-	0.14	11.7	0.5	0.24	10.9	0.4	1.3	1	0	0	1	1	1	0	Ribosomal	protein	S27
OrfB_Zn_ribbon	PF07282.6	gi|385803024|ref|YP_005839424.1|	-	1	9.0	3.1	2.5	7.8	2.1	1.7	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
ABC_tran	PF00005.22	gi|385803025|ref|YP_005839425.1|	-	9e-30	103.7	0.2	3.5e-29	101.8	0.0	2.0	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.1	gi|385803025|ref|YP_005839425.1|	-	1.2e-09	38.6	1.0	1.5e-06	28.4	0.1	2.4	2	1	0	2	2	1	1	AAA	domain
SMC_N	PF02463.14	gi|385803025|ref|YP_005839425.1|	-	4.9e-06	25.9	0.1	1.8e-05	24.1	0.0	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|385803025|ref|YP_005839425.1|	-	1.3e-05	25.6	0.0	2.8e-05	24.5	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.1	gi|385803025|ref|YP_005839425.1|	-	0.0037	16.3	0.2	1.1	8.2	0.0	2.2	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA	PF00004.24	gi|385803025|ref|YP_005839425.1|	-	0.0054	16.9	0.7	0.085	13.0	0.0	3.1	2	1	0	3	3	3	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
cobW	PF02492.14	gi|385803025|ref|YP_005839425.1|	-	0.0063	15.9	0.4	0.056	12.8	0.0	2.4	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_29	PF13555.1	gi|385803025|ref|YP_005839425.1|	-	0.011	15.2	0.1	0.036	13.5	0.0	1.9	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.1	gi|385803025|ref|YP_005839425.1|	-	0.012	15.1	0.5	0.012	15.1	0.4	2.1	2	1	0	2	2	2	0	AAA	domain
AAA_16	PF13191.1	gi|385803025|ref|YP_005839425.1|	-	0.014	15.4	1.5	0.058	13.3	1.0	2.1	1	1	0	1	1	1	0	AAA	ATPase	domain
DUF258	PF03193.11	gi|385803025|ref|YP_005839425.1|	-	0.021	14.0	0.1	0.044	12.9	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
Zeta_toxin	PF06414.7	gi|385803025|ref|YP_005839425.1|	-	0.021	13.9	0.2	0.05	12.7	0.2	1.5	1	0	0	1	1	1	0	Zeta	toxin
NACHT	PF05729.7	gi|385803025|ref|YP_005839425.1|	-	0.022	14.3	0.6	0.53	9.9	0.1	2.3	2	0	0	2	2	2	0	NACHT	domain
AAA_22	PF13401.1	gi|385803025|ref|YP_005839425.1|	-	0.024	14.7	1.1	0.31	11.1	0.5	2.5	1	1	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.17	gi|385803025|ref|YP_005839425.1|	-	0.04	12.7	0.3	0.18	10.6	0.1	2.0	2	0	0	2	2	2	0	NB-ARC	domain
AAA_17	PF13207.1	gi|385803025|ref|YP_005839425.1|	-	0.044	14.5	0.1	0.11	13.3	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
SbcCD_C	PF13558.1	gi|385803025|ref|YP_005839425.1|	-	0.074	12.9	0.0	0.46	10.4	0.0	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_33	PF13671.1	gi|385803025|ref|YP_005839425.1|	-	0.11	12.3	0.3	0.62	9.9	0.0	2.4	3	0	0	3	3	3	0	AAA	domain
DUF1542	PF07564.6	gi|385803025|ref|YP_005839425.1|	-	5.5	7.0	13.4	2.6	8.1	3.6	3.4	3	0	0	3	3	3	0	Domain	of	Unknown	Function	(DUF1542)
FecCD	PF01032.13	gi|385803026|ref|YP_005839426.1|	-	5.6e-88	294.7	39.9	6.7e-88	294.4	27.6	1.0	1	0	0	1	1	1	1	FecCD	transport	family
ABC-3	PF00950.12	gi|385803026|ref|YP_005839426.1|	-	1.4e-06	27.8	17.0	1.4e-06	27.8	11.8	2.2	1	1	1	2	2	2	1	ABC	3	transport	family
Nepo_coat_N	PF03689.10	gi|385803026|ref|YP_005839426.1|	-	0.12	12.1	0.0	0.27	11.0	0.0	1.5	1	0	0	1	1	1	0	Nepovirus	coat	protein,	N-terminal	domain
Peripla_BP_2	PF01497.13	gi|385803027|ref|YP_005839427.1|	-	5.4e-27	94.4	0.1	7.9e-27	93.9	0.1	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
Thioredoxin	PF00085.15	gi|385803028|ref|YP_005839428.1|	-	1.3e-29	101.9	0.0	2.1e-29	101.2	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|385803028|ref|YP_005839428.1|	-	2.1e-10	40.7	0.3	2.2e-09	37.4	0.0	2.3	2	1	0	2	2	2	1	Thioredoxin-like	domain
Thioredoxin_7	PF13899.1	gi|385803028|ref|YP_005839428.1|	-	1.5e-07	31.3	0.1	4e-07	29.9	0.1	1.7	1	0	0	1	1	1	1	Thioredoxin-like
Thioredoxin_8	PF13905.1	gi|385803028|ref|YP_005839428.1|	-	3.4e-07	30.2	0.1	0.00054	20.0	0.0	2.7	2	1	1	3	3	3	2	Thioredoxin-like
Thioredoxin_9	PF14595.1	gi|385803028|ref|YP_005839428.1|	-	3.7e-06	26.5	0.1	4.8e-06	26.1	0.1	1.3	1	0	0	1	1	1	1	Thioredoxin
TraF	PF13728.1	gi|385803028|ref|YP_005839428.1|	-	3.9e-05	23.2	0.4	6.3e-05	22.5	0.2	1.5	1	1	0	1	1	1	1	F	plasmid	transfer	operon	protein
DSBA	PF01323.15	gi|385803028|ref|YP_005839428.1|	-	0.00011	21.8	0.2	0.0003	20.3	0.0	1.7	1	1	1	2	2	2	1	DSBA-like	thioredoxin	domain
DUF836	PF05768.9	gi|385803028|ref|YP_005839428.1|	-	0.00035	20.7	0.0	0.00069	19.8	0.0	1.5	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
AhpC-TSA	PF00578.16	gi|385803028|ref|YP_005839428.1|	-	0.00045	19.8	0.0	0.00066	19.3	0.0	1.3	1	0	0	1	1	1	1	AhpC/TSA	family
HyaE	PF07449.6	gi|385803028|ref|YP_005839428.1|	-	0.0012	18.6	0.0	0.0026	17.6	0.0	1.5	1	0	0	1	1	1	1	Hydrogenase-1	expression	protein	HyaE
Thioredoxin_5	PF13743.1	gi|385803028|ref|YP_005839428.1|	-	0.0092	15.5	0.3	0.028	13.9	0.0	1.9	2	1	1	3	3	3	1	Thioredoxin
Redoxin	PF08534.5	gi|385803028|ref|YP_005839428.1|	-	0.023	14.2	0.4	0.26	10.8	0.1	2.0	1	1	1	2	2	2	0	Redoxin
TPX2	PF06886.6	gi|385803028|ref|YP_005839428.1|	-	0.055	13.5	0.5	0.11	12.6	0.3	1.4	1	0	0	1	1	1	0	Targeting	protein	for	Xklp2	(TPX2)
Glutaredoxin	PF00462.19	gi|385803028|ref|YP_005839428.1|	-	0.11	12.4	0.4	0.35	10.9	0.0	2.0	2	1	0	2	2	2	0	Glutaredoxin
DEAD	PF00270.24	gi|385803030|ref|YP_005839430.1|	-	6.8e-26	90.7	0.6	1.1e-24	86.8	0.0	2.5	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|385803030|ref|YP_005839430.1|	-	1.1e-07	31.6	0.2	3.3e-07	30.0	0.0	1.9	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|385803030|ref|YP_005839430.1|	-	1.4e-05	24.9	0.0	2.5e-05	24.1	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DJ-1_PfpI	PF01965.19	gi|385803030|ref|YP_005839430.1|	-	0.026	13.9	0.2	0.17	11.3	0.1	2.4	2	0	0	2	2	2	0	DJ-1/PfpI	family
DUF433	PF04255.9	gi|385803030|ref|YP_005839430.1|	-	0.057	12.8	0.0	0.13	11.7	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF433)
Aminotran_1_2	PF00155.16	gi|385803031|ref|YP_005839431.1|	-	2.9e-64	217.3	0.0	3.3e-64	217.1	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.16	gi|385803031|ref|YP_005839431.1|	-	1.9e-07	30.5	0.0	1.4e-06	27.6	0.0	1.9	2	0	0	2	2	2	1	Beta-eliminating	lyase
Cys_Met_Meta_PP	PF01053.15	gi|385803031|ref|YP_005839431.1|	-	6.2e-06	24.7	0.0	2e-05	23.0	0.0	1.7	2	0	0	2	2	2	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_5	PF00266.14	gi|385803031|ref|YP_005839431.1|	-	0.00097	17.9	0.0	0.0016	17.2	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.12	gi|385803031|ref|YP_005839431.1|	-	0.0057	15.7	0.0	0.0092	15.0	0.0	1.3	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
DMRL_synthase	PF00885.14	gi|385803032|ref|YP_005839432.1|	-	9.8e-34	116.0	1.6	1.1e-33	115.8	1.1	1.1	1	0	0	1	1	1	1	6,7-dimethyl-8-ribityllumazine	synthase
PMT_2	PF13231.1	gi|385803033|ref|YP_005839433.1|	-	3.5e-12	46.5	5.9	3.5e-12	46.5	4.1	3.3	4	1	0	4	4	4	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
TMEM190	PF15431.1	gi|385803033|ref|YP_005839433.1|	-	0.13	12.1	0.0	0.24	11.3	0.0	1.3	1	0	0	1	1	1	0	Transmembrane	protein	190
ATP-grasp	PF02222.17	gi|385803034|ref|YP_005839434.1|	-	2e-48	163.9	0.0	2.9e-48	163.4	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|385803034|ref|YP_005839434.1|	-	5.7e-13	49.0	0.0	1.2e-12	47.9	0.0	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|385803034|ref|YP_005839434.1|	-	5.4e-07	29.6	0.0	8e-07	29.0	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|385803034|ref|YP_005839434.1|	-	3.6e-06	25.9	0.0	0.00017	20.4	0.0	2.1	2	0	0	2	2	2	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
2-Hacid_dh_C	PF02826.14	gi|385803034|ref|YP_005839434.1|	-	3.7e-05	22.9	0.0	6.7e-05	22.1	0.0	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Dala_Dala_lig_C	PF07478.8	gi|385803034|ref|YP_005839434.1|	-	0.00015	21.2	0.0	0.00027	20.3	0.0	1.4	1	0	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
XdhC_C	PF13478.1	gi|385803034|ref|YP_005839434.1|	-	0.0024	18.1	0.1	0.0059	16.9	0.0	1.7	2	0	0	2	2	2	1	XdhC	Rossmann	domain
3HCDH_N	PF02737.13	gi|385803034|ref|YP_005839434.1|	-	0.0038	16.9	0.0	0.0097	15.5	0.0	1.7	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pyr_redox	PF00070.22	gi|385803034|ref|YP_005839434.1|	-	0.045	14.1	0.0	0.12	12.7	0.0	1.7	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_2	PF03446.10	gi|385803034|ref|YP_005839434.1|	-	0.089	12.6	0.0	0.39	10.5	0.0	1.9	2	0	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
AIRC	PF00731.15	gi|385803035|ref|YP_005839435.1|	-	5.6e-52	175.0	0.4	6.9e-52	174.7	0.3	1.1	1	0	0	1	1	1	1	AIR	carboxylase
Peripla_BP_1	PF00532.16	gi|385803035|ref|YP_005839435.1|	-	0.044	12.9	0.0	0.057	12.6	0.0	1.3	1	0	0	1	1	1	0	Periplasmic	binding	proteins	and	sugar	binding	domain	of	LacI	family
Oxidored_q4	PF00507.14	gi|385803036|ref|YP_005839436.1|	-	2.6e-27	94.6	0.1	3.2e-27	94.3	0.0	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase,	chain	3
DuoxA	PF10204.4	gi|385803036|ref|YP_005839436.1|	-	0.42	9.6	5.1	0.12	11.4	1.7	1.4	2	0	0	2	2	2	0	Dual	oxidase	maturation	factor
DUF3188	PF11384.3	gi|385803036|ref|YP_005839436.1|	-	0.56	9.8	4.1	14	5.3	1.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3188)
Oxidored_q6	PF01058.17	gi|385803037|ref|YP_005839437.1|	-	5.2e-22	77.8	0.2	7.8e-22	77.2	0.1	1.2	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
Nuc_N	PF14448.1	gi|385803037|ref|YP_005839437.1|	-	0.13	11.8	0.2	25	4.5	0.0	3.1	3	0	0	3	3	3	0	Nuclease	N	terminal
Complex1_49kDa	PF00346.14	gi|385803038|ref|YP_005839438.1|	-	6.5e-63	212.2	0.0	1.1e-40	139.3	0.0	2.2	1	1	1	2	2	2	2	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
Complex1_30kDa	PF00329.14	gi|385803038|ref|YP_005839438.1|	-	4.5e-30	103.9	0.1	8.4e-30	103.0	0.0	1.5	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
Autoind_bind	PF03472.10	gi|385803038|ref|YP_005839438.1|	-	0.023	13.9	1.2	0.092	12.0	0.1	2.2	1	1	1	2	2	2	0	Autoinducer	binding	domain
NADHdh	PF00146.16	gi|385803039|ref|YP_005839439.1|	-	6.5e-79	265.2	9.7	8.2e-79	264.8	6.7	1.0	1	0	0	1	1	1	1	NADH	dehydrogenase
Fer4	PF00037.22	gi|385803040|ref|YP_005839440.1|	-	1.5e-12	46.5	9.5	1.2e-06	27.8	2.0	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|385803040|ref|YP_005839440.1|	-	2.3e-11	43.9	10.4	3.6e-11	43.2	7.2	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|385803040|ref|YP_005839440.1|	-	1.5e-10	40.8	9.0	2e-10	40.3	6.2	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|385803040|ref|YP_005839440.1|	-	7.3e-10	38.9	8.4	1.5e-09	37.9	5.9	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|385803040|ref|YP_005839440.1|	-	1.1e-09	37.9	10.8	1.6e-09	37.3	7.5	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|385803040|ref|YP_005839440.1|	-	1.9e-09	38.0	4.2	3.3e-05	24.5	0.1	2.3	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_6	PF12837.2	gi|385803040|ref|YP_005839440.1|	-	5.6e-08	32.3	12.9	0.00042	20.0	1.2	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|385803040|ref|YP_005839440.1|	-	7.2e-08	32.3	9.7	2.1e-07	30.8	7.1	1.5	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|385803040|ref|YP_005839440.1|	-	9e-08	31.6	9.8	0.00019	21.1	0.9	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|385803040|ref|YP_005839440.1|	-	1e-06	28.5	8.9	0.0038	17.4	1.7	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|385803040|ref|YP_005839440.1|	-	1.2e-05	25.5	11.9	0.003	17.8	0.9	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|385803040|ref|YP_005839440.1|	-	8.6e-05	23.0	4.5	0.097	13.2	0.5	2.6	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_18	PF13746.1	gi|385803040|ref|YP_005839440.1|	-	0.00011	22.5	12.2	0.022	15.1	1.3	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|385803040|ref|YP_005839440.1|	-	0.00018	21.8	14.7	0.0077	16.7	2.7	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.1	gi|385803040|ref|YP_005839440.1|	-	0.11	12.8	12.7	0.49	10.8	0.8	2.6	3	0	0	3	3	2	0	4Fe-4S	single	cluster	domain
Ecl1	PF12855.2	gi|385803040|ref|YP_005839440.1|	-	0.95	8.8	4.7	4.8	6.5	0.2	2.3	2	0	0	2	2	2	0	Life-span	regulatory	factor
Oxidored_q3	PF00499.15	gi|385803041|ref|YP_005839441.1|	-	9.9e-14	51.3	7.1	9.9e-14	51.3	4.9	1.3	1	1	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
DUF4040	PF13244.1	gi|385803041|ref|YP_005839441.1|	-	0.001	18.9	10.9	0.001	18.9	7.5	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4040)
YlaC	PF10777.4	gi|385803041|ref|YP_005839441.1|	-	3.8	7.0	6.0	2.8	7.4	3.5	1.3	1	1	0	1	1	1	0	Inner	membrane	protein	YlaC
Oxidored_q2	PF00420.19	gi|385803043|ref|YP_005839443.1|	-	3.9e-21	74.4	7.1	4.2e-21	74.3	4.9	1.0	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
Oxidored_q1	PF00361.15	gi|385803044|ref|YP_005839444.1|	-	4.2e-74	249.2	11.5	4.2e-74	249.2	8.0	2.0	3	0	0	3	3	3	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Oxidored_q1_N	PF00662.15	gi|385803044|ref|YP_005839444.1|	-	1.5e-12	46.9	0.5	3.7e-12	45.6	0.3	1.7	1	0	0	1	1	1	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Oxidored_q1	PF00361.15	gi|385803045|ref|YP_005839445.1|	-	8.4e-65	218.7	22.5	8.4e-65	218.7	15.6	2.2	3	0	0	3	3	3	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Oxidored_q5_N	PF01059.12	gi|385803045|ref|YP_005839445.1|	-	0.00091	19.0	0.5	0.00091	19.0	0.3	3.4	2	1	1	3	3	3	1	NADH-ubiquinone	oxidoreductase	chain	4,	amino	terminus
Tachykinin	PF02202.11	gi|385803045|ref|YP_005839445.1|	-	0.31	10.8	2.3	5.5	6.9	0.2	3.1	2	0	0	2	2	2	0	Tachykinin	family
Oxidored_q1	PF00361.15	gi|385803046|ref|YP_005839446.1|	-	1e-58	198.7	11.8	1e-58	198.7	8.2	2.3	2	1	1	3	3	3	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Oxidored_q1_N	PF00662.15	gi|385803046|ref|YP_005839446.1|	-	0.0065	16.0	4.3	0.0065	16.0	3.0	2.0	2	0	0	2	2	2	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
DUF624	PF04854.9	gi|385803046|ref|YP_005839446.1|	-	0.05	13.4	0.6	0.05	13.4	0.4	3.6	3	1	0	3	3	3	0	Protein	of	unknown	function,	DUF624
DHH	PF01368.15	gi|385803047|ref|YP_005839447.1|	-	1.2e-14	54.1	0.9	2.4e-14	53.1	0.2	1.8	2	0	0	2	2	2	1	DHH	family
DHHA1	PF02272.14	gi|385803047|ref|YP_005839447.1|	-	1.3e-10	40.7	0.1	3e-10	39.6	0.1	1.6	1	0	0	1	1	1	1	DHHA1	domain
TrkA_N	PF02254.13	gi|385803047|ref|YP_005839447.1|	-	0.0065	16.4	0.1	0.029	14.3	0.0	2.2	2	0	0	2	2	2	1	TrkA-N	domain
CBS	PF00571.23	gi|385803048|ref|YP_005839448.1|	-	4.3e-22	77.6	3.8	1e-10	41.1	0.7	2.6	2	0	0	2	2	2	2	CBS	domain
ParBc	PF02195.13	gi|385803048|ref|YP_005839448.1|	-	2.9e-06	27.2	0.1	1e-05	25.5	0.0	2.0	2	1	0	2	2	2	1	ParB-like	nuclease	domain
DUF1015	PF06245.6	gi|385803048|ref|YP_005839448.1|	-	0.023	13.2	0.0	0.031	12.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1015)
ParBc_2	PF08857.6	gi|385803048|ref|YP_005839448.1|	-	0.032	14.0	0.1	0.35	10.6	0.0	2.2	1	1	0	1	1	1	0	Putative	ParB-like	nuclease
Pyr_redox_2	PF07992.9	gi|385803050|ref|YP_005839450.1|	-	2.9e-26	92.6	0.1	3.8e-26	92.2	0.1	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|385803050|ref|YP_005839450.1|	-	1.1e-14	54.6	0.6	1.7e-12	47.5	0.0	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|385803050|ref|YP_005839450.1|	-	2.3e-12	47.4	0.3	3.8e-10	40.1	0.0	2.7	2	1	1	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|385803050|ref|YP_005839450.1|	-	2.6e-07	29.8	0.7	0.018	13.9	0.1	2.4	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|385803050|ref|YP_005839450.1|	-	0.00021	20.2	6.0	0.0019	17.1	0.1	3.0	2	1	0	3	3	3	1	FAD	binding	domain
HI0933_like	PF03486.9	gi|385803050|ref|YP_005839450.1|	-	0.0004	18.9	1.2	0.91	7.9	0.0	3.4	3	1	1	4	4	4	2	HI0933-like	protein
NAD_binding_8	PF13450.1	gi|385803050|ref|YP_005839450.1|	-	0.00041	20.3	0.0	0.0024	17.8	0.0	2.3	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
NAD_binding_7	PF13241.1	gi|385803050|ref|YP_005839450.1|	-	0.0041	17.3	0.0	0.02	15.1	0.0	2.0	2	0	0	2	2	2	1	Putative	NAD(P)-binding
Trp_halogenase	PF04820.9	gi|385803050|ref|YP_005839450.1|	-	0.034	12.7	0.4	12	4.3	0.0	3.0	3	0	0	3	3	3	0	Tryptophan	halogenase
GIDA	PF01134.17	gi|385803050|ref|YP_005839450.1|	-	0.11	11.3	1.0	8.8	5.0	0.1	3.4	4	0	0	4	4	4	0	Glucose	inhibited	division	protein	A
DUF357	PF04010.8	gi|385803051|ref|YP_005839451.1|	-	3.4e-29	100.3	0.0	4e-29	100.1	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF357)
Resolvase	PF00239.16	gi|385803051|ref|YP_005839451.1|	-	0.034	14.0	0.0	0.041	13.7	0.0	1.1	1	0	0	1	1	1	0	Resolvase,	N	terminal	domain
tRNA-synt_1e	PF01406.14	gi|385803052|ref|YP_005839452.1|	-	2e-100	335.8	0.6	1.2e-99	333.2	0.4	1.9	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1g	PF09334.6	gi|385803052|ref|YP_005839452.1|	-	1.1e-09	37.5	0.1	0.00013	20.7	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
DALR_2	PF09190.6	gi|385803052|ref|YP_005839452.1|	-	1.9e-09	37.6	0.1	8.1e-09	35.6	0.0	2.2	2	0	0	2	2	2	1	DALR	domain
tRNA-synt_1f	PF01921.13	gi|385803052|ref|YP_005839452.1|	-	2.6e-09	36.2	0.2	2.3e-05	23.2	0.0	3.0	3	0	0	3	3	3	2	tRNA	synthetases	class	I	(K)
tRNA-synt_1	PF00133.17	gi|385803052|ref|YP_005839452.1|	-	3.1e-05	22.1	0.1	0.00096	17.2	0.0	2.1	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1d	PF00750.14	gi|385803052|ref|YP_005839452.1|	-	0.0025	16.6	0.4	0.27	10.0	0.1	2.9	3	0	0	3	3	3	1	tRNA	synthetases	class	I	(R)
CbiX	PF01903.12	gi|385803054|ref|YP_005839454.1|	-	3.3e-40	136.4	0.4	3.7e-21	75.2	0.0	2.6	3	0	0	3	3	3	2	CbiX
CbiK	PF06180.6	gi|385803054|ref|YP_005839454.1|	-	2.9e-07	29.8	0.1	0.0069	15.5	0.1	2.1	1	1	0	2	2	2	2	Cobalt	chelatase	(CbiK)
Fumerase_C	PF05683.7	gi|385803054|ref|YP_005839454.1|	-	0.082	12.0	0.0	6	5.9	0.0	2.2	2	0	0	2	2	2	0	Fumarase	C-terminus
Trm112p	PF03966.11	gi|385803057|ref|YP_005839457.1|	-	2e-05	24.8	0.2	4.7e-05	23.6	0.1	1.6	1	1	0	1	1	1	1	Trm112p-like	protein
Adenylsucc_synt	PF00709.16	gi|385803058|ref|YP_005839458.1|	-	6.5e-144	479.6	0.0	7.4e-144	479.4	0.0	1.0	1	0	0	1	1	1	1	Adenylosuccinate	synthetase
AICARFT_IMPCHas	PF01808.13	gi|385803059|ref|YP_005839459.1|	-	4.2e-83	279.0	0.1	5.8e-83	278.5	0.1	1.1	1	0	0	1	1	1	1	AICARFT/IMPCHase	bienzyme
Formyl_trans_N	PF00551.14	gi|385803059|ref|YP_005839459.1|	-	4.6e-37	127.2	0.0	9.2e-37	126.3	0.0	1.5	1	0	0	1	1	1	1	Formyl	transferase
Lyase_1	PF00206.15	gi|385803060|ref|YP_005839460.1|	-	4.3e-47	160.8	0.0	6.4e-47	160.2	0.0	1.3	1	0	0	1	1	1	1	Lyase
ASL_C	PF08328.6	gi|385803060|ref|YP_005839460.1|	-	4.3e-39	132.9	0.0	7.2e-39	132.1	0.0	1.4	1	0	0	1	1	1	1	Adenylosuccinate	lyase	C-terminal
DUF3029	PF11230.3	gi|385803060|ref|YP_005839460.1|	-	0.055	11.6	0.0	0.083	11.0	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3029)
ADH_N	PF08240.7	gi|385803061|ref|YP_005839461.1|	-	1.2e-10	41.0	0.0	1.8e-10	40.5	0.0	1.2	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|385803061|ref|YP_005839461.1|	-	0.00069	19.1	0.0	0.0014	18.2	0.0	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Pribosyltran	PF00156.22	gi|385803062|ref|YP_005839462.1|	-	1.5e-20	73.1	0.1	2.9e-20	72.2	0.1	1.5	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.1	gi|385803062|ref|YP_005839462.1|	-	0.0011	18.1	0.1	0.0017	17.5	0.0	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
HTH_23	PF13384.1	gi|385803062|ref|YP_005839462.1|	-	0.0017	17.9	0.0	0.0034	16.9	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
PRTase_2	PF15609.1	gi|385803062|ref|YP_005839462.1|	-	0.0035	16.6	0.2	0.17	11.1	0.1	2.2	2	0	0	2	2	2	1	Phosphoribosyl	transferase
HTH_7	PF02796.10	gi|385803062|ref|YP_005839462.1|	-	0.0039	17.0	0.0	0.0074	16.1	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_11	PF08279.7	gi|385803062|ref|YP_005839462.1|	-	0.015	14.9	0.1	0.059	13.0	0.0	2.0	2	0	0	2	2	2	0	HTH	domain
Sigma70_r4	PF04545.11	gi|385803062|ref|YP_005839462.1|	-	0.028	13.7	0.0	0.05	12.9	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_24	PF13412.1	gi|385803062|ref|YP_005839462.1|	-	0.038	13.3	0.4	0.1	12.0	0.0	2.0	3	0	0	3	3	3	0	Winged	helix-turn-helix	DNA-binding
HTH_28	PF13518.1	gi|385803062|ref|YP_005839462.1|	-	0.051	13.5	0.0	0.17	11.9	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
CENP-B_N	PF04218.8	gi|385803062|ref|YP_005839462.1|	-	0.1	12.0	0.0	0.22	10.9	0.0	1.5	1	0	0	1	1	1	0	CENP-B	N-terminal	DNA-binding	domain
HTH_38	PF13936.1	gi|385803062|ref|YP_005839462.1|	-	0.12	11.9	0.0	0.29	10.6	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
Glutaredoxin	PF00462.19	gi|385803063|ref|YP_005839463.1|	-	6.3e-14	51.7	0.0	1.1e-13	50.9	0.0	1.4	1	0	0	1	1	1	1	Glutaredoxin
GST_N_3	PF13417.1	gi|385803063|ref|YP_005839463.1|	-	0.06	13.5	0.0	0.087	13.0	0.0	1.2	1	0	0	1	1	1	0	Glutathione	S-transferase,	N-terminal	domain
DUF4147	PF13660.1	gi|385803066|ref|YP_005839466.1|	-	8.3e-68	228.0	0.6	8.3e-68	228.0	0.4	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4147)
MOFRL	PF05161.8	gi|385803066|ref|YP_005839466.1|	-	1.8e-26	92.3	3.3	3.7e-26	91.3	2.3	1.6	1	0	0	1	1	1	1	MOFRL	family
PAPS_reduct	PF01507.14	gi|385803067|ref|YP_005839467.1|	-	1.8e-18	66.9	0.0	1.1e-14	54.6	0.0	3.1	2	1	0	2	2	2	2	Phosphoadenosine	phosphosulfate	reductase	family
ATP_bind_4	PF01902.12	gi|385803067|ref|YP_005839467.1|	-	0.0078	15.5	0.0	0.031	13.6	0.0	1.9	2	0	0	2	2	2	1	ATP-binding	region
ATP_bind_4	PF01902.12	gi|385803068|ref|YP_005839468.1|	-	3e-53	180.4	0.0	8.3e-53	178.9	0.0	1.6	1	1	0	1	1	1	1	ATP-binding	region
Asn_synthase	PF00733.16	gi|385803068|ref|YP_005839468.1|	-	0.0016	17.9	0.1	0.0029	17.1	0.0	1.4	2	0	0	2	2	2	1	Asparagine	synthase
QueC	PF06508.8	gi|385803068|ref|YP_005839468.1|	-	0.023	13.9	0.0	0.031	13.5	0.0	1.2	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
NTP_transferase	PF00483.18	gi|385803069|ref|YP_005839469.1|	-	5e-36	124.2	0.0	6e-36	124.0	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|385803069|ref|YP_005839469.1|	-	1.6e-10	41.3	0.0	2.1e-10	40.9	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.14	gi|385803069|ref|YP_005839469.1|	-	0.011	15.3	0.0	0.034	13.6	0.0	1.8	2	0	0	2	2	2	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Hexapep	PF00132.19	gi|385803069|ref|YP_005839469.1|	-	0.17	11.4	0.6	2.6	7.7	0.0	2.9	4	0	0	4	4	4	0	Bacterial	transferase	hexapeptide	(six	repeats)
zf-RING_3	PF14369.1	gi|385803070|ref|YP_005839470.1|	-	0.9	9.5	3.4	14	5.7	0.3	2.5	2	0	0	2	2	2	0	zinc-finger
Zn-ribbon_8	PF09723.5	gi|385803070|ref|YP_005839470.1|	-	1.5	8.8	5.4	4.5	7.3	3.5	2.0	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-trcl	PF13451.1	gi|385803070|ref|YP_005839470.1|	-	5.8	6.6	6.9	0.54	9.9	0.8	2.0	1	1	1	2	2	2	0	Probable	zinc-binding	domain
Pribosyltran	PF00156.22	gi|385803071|ref|YP_005839471.1|	-	4.5e-21	74.8	1.8	7.6e-21	74.1	1.3	1.4	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.1	gi|385803071|ref|YP_005839471.1|	-	0.0025	17.0	0.1	0.0043	16.2	0.0	1.3	1	1	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_3	PF15610.1	gi|385803071|ref|YP_005839471.1|	-	0.058	12.2	0.1	0.073	11.9	0.0	1.2	1	0	0	1	1	1	0	PRTase	ComF-like
PRTase_2	PF15609.1	gi|385803071|ref|YP_005839471.1|	-	0.09	12.0	0.2	0.1	11.8	0.1	1.2	1	0	0	1	1	1	0	Phosphoribosyl	transferase
MoCo_carrier	PF12694.2	gi|385803071|ref|YP_005839471.1|	-	0.2	11.0	0.8	1.5	8.2	0.1	2.1	1	1	0	2	2	2	0	Putative	molybdenum	carrier
EIIA-man	PF03610.11	gi|385803071|ref|YP_005839471.1|	-	0.32	11.0	1.8	3	7.9	0.3	2.3	1	1	1	2	2	2	0	PTS	system	fructose	IIA	component
DUF1628	PF07790.6	gi|385803072|ref|YP_005839472.1|	-	2.6e-21	76.1	1.1	4e-21	75.5	0.7	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1628)
DUF4307	PF14155.1	gi|385803072|ref|YP_005839472.1|	-	0.028	14.1	0.1	0.054	13.2	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4307)
MNHE	PF01899.11	gi|385803073|ref|YP_005839473.1|	-	1.4e-34	118.9	1.2	2e-34	118.4	0.8	1.2	1	0	0	1	1	1	1	Na+/H+	ion	antiporter	subunit
LptE	PF04390.7	gi|385803073|ref|YP_005839473.1|	-	0.077	12.7	1.1	0.32	10.7	0.0	2.2	2	0	0	2	2	2	0	Lipopolysaccharide-assembly
MnhB	PF04039.8	gi|385803073|ref|YP_005839473.1|	-	0.52	10.3	5.4	0.093	12.7	1.2	1.7	2	0	0	2	2	2	0	Domain	related	to	MnhB	subunit	of	Na+/H+	antiporter
DUF360	PF04020.8	gi|385803073|ref|YP_005839473.1|	-	1	9.7	5.1	0.9	9.9	2.2	1.4	1	1	0	1	1	1	0	Membrane	protein	of	unknown	function
MrpF_PhaF	PF04066.8	gi|385803074|ref|YP_005839474.1|	-	3.7e-17	62.3	4.4	3.7e-17	62.3	3.1	2.2	3	0	0	3	3	3	1	Multiple	resistance	and	pH	regulation	protein	F	(MrpF	/	PhaF)
DUF4117	PF13491.1	gi|385803074|ref|YP_005839474.1|	-	0.047	13.1	2.2	0.049	13.0	0.9	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4117)
DUF1109	PF06532.6	gi|385803074|ref|YP_005839474.1|	-	0.13	11.6	4.6	0.16	11.3	3.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1109)
Caps_synth_CapC	PF14102.1	gi|385803074|ref|YP_005839474.1|	-	0.14	12.2	6.8	0.1	12.6	0.6	2.1	1	1	1	2	2	2	0	Capsule	biosynthesis	CapC
DUF3317	PF11779.3	gi|385803074|ref|YP_005839474.1|	-	0.38	10.2	0.0	0.38	10.2	0.0	2.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3317)
PhaG_MnhG_YufB	PF03334.9	gi|385803075|ref|YP_005839475.1|	-	2.3e-28	98.0	9.4	2.8e-28	97.7	6.5	1.1	1	0	0	1	1	1	1	Na+/H+	antiporter	subunit
YtpI	PF14007.1	gi|385803075|ref|YP_005839475.1|	-	0.0053	16.6	1.8	0.0068	16.2	1.2	1.2	1	0	0	1	1	1	1	YtpI-like	protein
PRA1	PF03208.14	gi|385803075|ref|YP_005839475.1|	-	0.02	14.2	3.2	0.024	13.9	2.2	1.1	1	0	0	1	1	1	0	PRA1	family	protein
DUF4040	PF13244.1	gi|385803076|ref|YP_005839476.1|	-	1.3e-19	69.9	14.1	1.3e-19	69.9	9.8	2.5	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF4040)
YqhR	PF11085.3	gi|385803076|ref|YP_005839476.1|	-	0.69	9.4	3.8	1.1	8.7	2.6	1.3	1	0	0	1	1	1	0	Conserved	membrane	protein	YqhR
DUF2108	PF09881.4	gi|385803076|ref|YP_005839476.1|	-	0.76	9.6	12.5	0.19	11.5	5.8	2.1	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2108)
MnhB	PF04039.8	gi|385803077|ref|YP_005839477.1|	-	3.2e-19	69.1	18.4	4.2e-19	68.8	12.8	1.2	1	0	0	1	1	1	1	Domain	related	to	MnhB	subunit	of	Na+/H+	antiporter
Oxidored_q2	PF00420.19	gi|385803078|ref|YP_005839478.1|	-	1e-22	79.5	1.8	1.2e-22	79.2	1.2	1.0	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
DUF2108	PF09881.4	gi|385803078|ref|YP_005839478.1|	-	0.0015	18.2	2.8	0.0015	18.2	1.9	1.8	2	0	0	2	2	2	1	Predicted	membrane	protein	(DUF2108)
Acyl_transf_3	PF01757.17	gi|385803078|ref|YP_005839478.1|	-	0.055	12.2	1.9	0.077	11.8	1.1	1.4	1	1	0	1	1	1	0	Acyltransferase	family
Oxidored_q1	PF00361.15	gi|385803079|ref|YP_005839479.1|	-	2.1e-53	181.3	14.9	2.1e-53	181.3	10.3	1.9	3	0	0	3	3	3	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
NADHdeh_related	PF10125.4	gi|385803079|ref|YP_005839479.1|	-	5.2e-06	25.7	8.3	5.2e-06	25.7	5.7	2.8	2	1	0	3	3	3	1	NADH	dehydrogenase	I,	subunit	N	related	protein
Oxidored_q1_N	PF00662.15	gi|385803079|ref|YP_005839479.1|	-	0.045	13.3	0.4	0.15	11.6	0.0	2.2	2	0	0	2	2	2	0	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Oxidored_q1	PF00361.15	gi|385803080|ref|YP_005839480.1|	-	2.8e-58	197.3	7.0	2.8e-58	197.3	4.8	1.9	2	0	0	2	2	2	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Oxidored_q1_N	PF00662.15	gi|385803080|ref|YP_005839480.1|	-	0.0042	16.6	0.2	0.012	15.1	0.1	1.8	1	0	0	1	1	1	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Oxidored_q1	PF00361.15	gi|385803081|ref|YP_005839481.1|	-	9.3e-43	146.4	9.4	9.3e-43	146.4	6.5	2.3	2	0	0	2	2	2	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
TMEM171	PF15471.1	gi|385803081|ref|YP_005839481.1|	-	0.11	11.2	0.4	0.26	10.0	0.2	1.6	1	0	0	1	1	1	0	Transmembrane	protein	family	171
DFP	PF04127.10	gi|385803082|ref|YP_005839482.1|	-	2e-44	151.4	1.6	9.1e-44	149.2	0.1	2.2	2	0	0	2	2	2	1	DNA	/	pantothenate	metabolism	flavoprotein
Flavoprotein	PF02441.14	gi|385803082|ref|YP_005839482.1|	-	1e-26	93.1	0.6	2.9e-26	91.6	0.1	2.0	2	0	0	2	2	2	1	Flavoprotein
Polyketide_cyc2	PF10604.4	gi|385803083|ref|YP_005839483.1|	-	3.7e-09	36.8	1.3	4.9e-09	36.4	0.9	1.2	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc	PF03364.15	gi|385803083|ref|YP_005839483.1|	-	7.7e-06	25.9	0.3	1.5e-05	24.9	0.1	1.6	2	1	0	2	2	2	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
TrkA_N	PF02254.13	gi|385803084|ref|YP_005839484.1|	-	5.4e-49	165.0	10.0	4.7e-26	91.0	0.6	3.1	3	0	0	3	3	3	2	TrkA-N	domain
TrkA_C	PF02080.16	gi|385803084|ref|YP_005839484.1|	-	6.9e-27	92.8	10.5	4.7e-13	48.5	2.9	3.2	3	1	1	4	4	4	2	TrkA-C	domain
NAD_binding_7	PF13241.1	gi|385803084|ref|YP_005839484.1|	-	1.4e-09	38.1	2.2	2.6e-05	24.4	0.3	2.8	2	0	0	2	2	2	2	Putative	NAD(P)-binding
Shikimate_DH	PF01488.15	gi|385803084|ref|YP_005839484.1|	-	6.9e-09	35.9	0.9	0.0025	17.9	0.1	2.4	2	0	0	2	2	2	2	Shikimate	/	quinate	5-dehydrogenase
FAD_binding_3	PF01494.14	gi|385803084|ref|YP_005839484.1|	-	1.2e-06	27.8	0.6	0.005	15.9	0.0	2.5	3	0	0	3	3	3	2	FAD	binding	domain
Saccharop_dh	PF03435.13	gi|385803084|ref|YP_005839484.1|	-	1.4e-06	27.5	2.4	0.0095	14.9	0.2	2.3	2	0	0	2	2	2	2	Saccharopine	dehydrogenase
F420_oxidored	PF03807.12	gi|385803084|ref|YP_005839484.1|	-	1.5e-06	28.5	1.8	0.03	14.7	0.1	3.7	2	1	1	3	3	3	2	NADP	oxidoreductase	coenzyme	F420-dependent
UDPG_MGDP_dh_N	PF03721.9	gi|385803084|ref|YP_005839484.1|	-	3.6e-06	26.4	0.7	1.7e-05	24.3	0.4	2.3	2	1	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
3HCDH_N	PF02737.13	gi|385803084|ref|YP_005839484.1|	-	7.7e-05	22.4	0.7	0.011	15.3	0.2	2.3	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pyr_redox_2	PF07992.9	gi|385803084|ref|YP_005839484.1|	-	0.00039	20.3	0.3	0.37	10.6	0.0	2.7	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
2-Hacid_dh_C	PF02826.14	gi|385803084|ref|YP_005839484.1|	-	0.00081	18.5	0.0	0.98	8.5	0.0	2.5	2	0	0	2	2	2	2	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.11	gi|385803084|ref|YP_005839484.1|	-	0.00083	18.8	0.1	0.0042	16.5	0.0	2.1	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
NAD_Gly3P_dh_N	PF01210.18	gi|385803084|ref|YP_005839484.1|	-	0.00085	19.0	0.0	0.039	13.6	0.0	2.5	2	0	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Pyr_redox	PF00070.22	gi|385803084|ref|YP_005839484.1|	-	0.0011	19.2	0.8	0.37	11.2	0.0	3.0	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
HEM4	PF02602.10	gi|385803084|ref|YP_005839484.1|	-	0.0033	16.7	0.1	0.015	14.5	0.0	2.1	1	1	1	2	2	2	1	Uroporphyrinogen-III	synthase	HemD
NAD_binding_2	PF03446.10	gi|385803084|ref|YP_005839484.1|	-	0.0034	17.2	0.2	3	7.6	0.0	2.6	2	0	0	2	2	2	2	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
XdhC_C	PF13478.1	gi|385803084|ref|YP_005839484.1|	-	0.0067	16.7	0.6	0.77	10.0	0.0	2.9	3	1	0	3	3	2	1	XdhC	Rossmann	domain
ThiF	PF00899.16	gi|385803084|ref|YP_005839484.1|	-	0.013	15.2	8.3	0.035	13.9	0.1	4.0	2	2	2	4	4	4	0	ThiF	family
Oxidored_nitro	PF00148.14	gi|385803084|ref|YP_005839484.1|	-	0.049	12.2	0.1	0.13	10.8	0.0	1.8	2	0	0	2	2	2	0	Nitrogenase	component	1	type	Oxidoreductase
DAO	PF01266.19	gi|385803084|ref|YP_005839484.1|	-	0.057	12.3	6.4	0.058	12.2	0.8	3.1	3	1	0	3	3	3	0	FAD	dependent	oxidoreductase
DUF2325	PF10087.4	gi|385803084|ref|YP_005839484.1|	-	0.16	11.8	0.5	2.3	8.1	0.0	2.8	3	0	0	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2325)
TrkH	PF02386.11	gi|385803085|ref|YP_005839485.1|	-	1.7e-55	188.0	12.2	2.5e-55	187.4	2.6	2.1	2	0	0	2	2	2	2	Cation	transport	protein
Amidase	PF01425.16	gi|385803086|ref|YP_005839486.1|	-	2.3e-134	448.5	7.7	2.4e-132	441.9	5.4	2.0	1	1	0	1	1	1	1	Amidase
Glu-tRNAGln	PF02686.10	gi|385803087|ref|YP_005839487.1|	-	4.6e-19	67.9	2.9	1.1e-18	66.7	0.4	2.0	2	0	0	2	2	2	1	Glu-tRNAGln	amidotransferase	C	subunit
TFIIB	PF00382.14	gi|385803088|ref|YP_005839488.1|	-	6.4e-43	144.4	0.3	2.5e-20	72.0	0.0	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|385803088|ref|YP_005839488.1|	-	8.9e-19	66.5	2.8	1.8e-18	65.5	2.0	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
Ribosomal_S27e	PF01667.12	gi|385803088|ref|YP_005839488.1|	-	0.011	15.2	0.5	0.019	14.4	0.4	1.3	1	0	0	1	1	1	0	Ribosomal	protein	S27
zf-ribbon_3	PF13248.1	gi|385803088|ref|YP_005839488.1|	-	0.035	13.3	0.2	0.059	12.6	0.1	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|385803088|ref|YP_005839488.1|	-	0.036	14.3	0.8	0.036	14.3	0.5	1.8	2	0	0	2	2	2	0	Restriction	alleviation	protein	Lar
Sigma70_r4	PF04545.11	gi|385803088|ref|YP_005839488.1|	-	0.038	13.2	0.0	0.038	13.2	0.0	3.7	4	0	0	4	4	4	0	Sigma-70,	region	4
RRN7	PF11781.3	gi|385803088|ref|YP_005839488.1|	-	0.064	12.7	0.9	0.11	11.9	0.6	1.4	1	0	0	1	1	1	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
Cyclin_N	PF00134.18	gi|385803088|ref|YP_005839488.1|	-	0.084	12.4	0.1	1.4	8.4	0.0	2.3	2	0	0	2	2	2	0	Cyclin,	N-terminal	domain
Rubredoxin	PF00301.15	gi|385803088|ref|YP_005839488.1|	-	0.13	12.1	0.5	9.6	6.1	0.0	2.5	2	0	0	2	2	2	0	Rubredoxin
OrfB_Zn_ribbon	PF07282.6	gi|385803088|ref|YP_005839488.1|	-	0.14	11.8	0.9	0.31	10.7	0.6	1.6	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1	PF03811.8	gi|385803088|ref|YP_005839488.1|	-	0.18	11.3	0.9	0.39	10.2	0.1	2.0	2	0	0	2	2	2	0	InsA	N-terminal	domain
Zn-ribbon_8	PF09723.5	gi|385803088|ref|YP_005839488.1|	-	4.4	7.3	5.9	3.1	7.8	0.6	2.3	1	1	1	2	2	2	0	Zinc	ribbon	domain
NUDIX	PF00293.23	gi|385803089|ref|YP_005839489.1|	-	8.8e-12	44.8	0.0	1.2e-11	44.3	0.0	1.3	1	0	0	1	1	1	1	NUDIX	domain
Staphylcoagulse	PF04022.7	gi|385803089|ref|YP_005839489.1|	-	0.017	14.5	0.4	0.03	13.6	0.3	1.4	1	0	0	1	1	1	0	Staphylocoagulase	repeat
Asn_synthase	PF00733.16	gi|385803090|ref|YP_005839490.1|	-	1.1e-33	116.8	0.0	1.8e-33	116.1	0.0	1.3	1	0	0	1	1	1	1	Asparagine	synthase
PHP_C	PF13263.1	gi|385803091|ref|YP_005839491.1|	-	1.6e-21	75.5	0.6	2.6e-20	71.6	0.2	2.2	2	0	0	2	2	2	1	PHP-associated
PHP	PF02811.14	gi|385803091|ref|YP_005839491.1|	-	5.7e-14	52.2	0.5	1.2e-13	51.2	0.3	1.5	1	1	0	1	1	1	1	PHP	domain
AIRS	PF00586.19	gi|385803092|ref|YP_005839492.1|	-	6.6e-41	138.4	12.2	2.1e-25	88.7	0.1	3.9	4	0	0	4	4	4	2	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.17	gi|385803092|ref|YP_005839492.1|	-	8.6e-35	120.0	2.9	1.9e-26	92.9	0.4	2.3	2	0	0	2	2	2	2	AIR	synthase	related	protein,	C-terminal	domain
His_biosynth	PF00977.16	gi|385803094|ref|YP_005839494.1|	-	5.6e-77	258.0	0.1	6.4e-77	257.8	0.0	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Dus	PF01207.12	gi|385803094|ref|YP_005839494.1|	-	1.7e-06	27.1	0.0	0.00043	19.2	0.0	2.1	2	0	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
ThiG	PF05690.9	gi|385803094|ref|YP_005839494.1|	-	1e-05	24.7	0.9	0.00057	19.0	0.1	2.1	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
NMO	PF03060.10	gi|385803094|ref|YP_005839494.1|	-	1.5e-05	24.3	1.1	0.00099	18.3	0.1	2.1	2	0	0	2	2	2	2	Nitronate	monooxygenase
PcrB	PF01884.12	gi|385803094|ref|YP_005839494.1|	-	0.00068	18.9	0.1	0.0013	18.0	0.0	1.5	1	1	0	1	1	1	1	PcrB	family
IMPDH	PF00478.20	gi|385803094|ref|YP_005839494.1|	-	0.0039	16.1	0.2	0.0077	15.1	0.0	1.5	2	0	0	2	2	2	1	IMP	dehydrogenase	/	GMP	reductase	domain
Glu_synthase	PF01645.12	gi|385803094|ref|YP_005839494.1|	-	0.035	13.0	0.0	0.054	12.4	0.0	1.2	1	0	0	1	1	1	0	Conserved	region	in	glutamate	synthase
DHO_dh	PF01180.16	gi|385803094|ref|YP_005839494.1|	-	0.055	12.4	0.0	0.1	11.5	0.0	1.4	1	0	0	1	1	1	0	Dihydroorotate	dehydrogenase
G3P_antiterm	PF04309.7	gi|385803094|ref|YP_005839494.1|	-	0.073	12.1	0.0	0.12	11.4	0.0	1.2	1	0	0	1	1	1	0	Glycerol-3-phosphate	responsive	antiterminator
TMP-TENI	PF02581.12	gi|385803094|ref|YP_005839494.1|	-	0.11	11.6	0.1	0.63	9.1	0.0	2.1	2	0	0	2	2	2	0	Thiamine	monophosphate	synthase/TENI
RNA_pol_L_2	PF13656.1	gi|385803095|ref|YP_005839495.1|	-	4.8e-15	54.7	0.0	5.8e-15	54.5	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
RNA_pol_L	PF01193.19	gi|385803095|ref|YP_005839495.1|	-	1.8e-05	23.7	0.0	2.3e-05	23.4	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
Lactamase_B	PF00753.22	gi|385803096|ref|YP_005839496.1|	-	8.8e-29	100.5	2.5	1.5e-28	99.8	1.7	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|385803096|ref|YP_005839496.1|	-	2.3e-06	27.3	0.1	4.5e-06	26.3	0.1	1.5	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
AMP-binding	PF00501.23	gi|385803098|ref|YP_005839498.1|	-	1.2e-87	293.9	0.6	1.4e-87	293.7	0.4	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|385803098|ref|YP_005839498.1|	-	2.5e-18	66.7	0.1	5.1e-18	65.7	0.0	1.5	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
Metallophos_2	PF12850.2	gi|385803099|ref|YP_005839499.1|	-	1.9e-14	53.7	1.0	3e-14	53.1	0.3	1.6	2	0	0	2	2	2	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|385803099|ref|YP_005839499.1|	-	1.1e-11	44.5	1.8	1.8e-11	43.8	1.3	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Toxin_51	PF15531.1	gi|385803099|ref|YP_005839499.1|	-	0.071	12.9	1.4	0.17	11.6	1.0	1.7	1	0	0	1	1	1	0	Putative	toxin	51
AAA_23	PF13476.1	gi|385803100|ref|YP_005839500.1|	-	2.5e-21	76.9	11.1	2.5e-21	76.9	7.7	6.0	1	1	1	2	2	1	1	AAA	domain
AAA_21	PF13304.1	gi|385803100|ref|YP_005839500.1|	-	2.2e-14	54.0	5.4	1.2e-09	38.6	0.9	2.8	3	0	0	3	3	3	2	AAA	domain
AAA_13	PF13166.1	gi|385803100|ref|YP_005839500.1|	-	2.6e-13	49.3	68.3	1.7e-09	36.7	6.9	4.2	2	1	2	4	4	4	3	AAA	domain
SMC_N	PF02463.14	gi|385803100|ref|YP_005839500.1|	-	1.7e-12	47.0	49.0	8.7e-11	41.4	34.0	2.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|385803100|ref|YP_005839500.1|	-	6.8e-08	31.9	0.2	1.5e-05	24.2	0.6	4.0	4	1	0	5	5	5	2	AAA	ATPase	domain
DUF3584	PF12128.3	gi|385803100|ref|YP_005839500.1|	-	1.1e-07	29.6	97.2	0.00021	18.8	28.5	4.0	3	1	1	4	4	4	3	Protein	of	unknown	function	(DUF3584)
AAA_29	PF13555.1	gi|385803100|ref|YP_005839500.1|	-	3.5e-05	23.2	0.0	7.5e-05	22.1	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SbcCD_C	PF13558.1	gi|385803100|ref|YP_005839500.1|	-	0.00013	21.8	0.1	0.00082	19.2	0.0	2.5	2	0	0	2	2	2	1	Putative	exonuclease	SbcCD,	C	subunit
DUF3450	PF11932.3	gi|385803100|ref|YP_005839500.1|	-	0.0028	16.9	6.3	0.0028	16.9	4.3	6.8	2	2	6	8	8	7	1	Protein	of	unknown	function	(DUF3450)
FliJ	PF02050.11	gi|385803100|ref|YP_005839500.1|	-	0.0083	16.1	5.1	0.0083	16.1	3.5	7.4	3	2	2	7	7	7	2	Flagellar	FliJ	protein
IncA	PF04156.9	gi|385803100|ref|YP_005839500.1|	-	0.0087	15.6	108.0	0.27	10.8	7.0	5.6	1	1	3	5	5	5	2	IncA	protein
Laminin_II	PF06009.7	gi|385803100|ref|YP_005839500.1|	-	0.026	14.2	64.3	0.055	13.2	2.0	6.2	2	1	2	5	5	5	0	Laminin	Domain	II
ABC_tran	PF00005.22	gi|385803100|ref|YP_005839500.1|	-	0.13	12.5	0.0	0.13	12.5	0.0	5.9	2	1	0	2	2	1	0	ABC	transporter
AAA_33	PF13671.1	gi|385803100|ref|YP_005839500.1|	-	0.14	12.0	0.0	0.14	12.0	0.0	3.9	3	2	0	3	3	2	0	AAA	domain
Reo_sigmaC	PF04582.7	gi|385803100|ref|YP_005839500.1|	-	0.32	10.1	42.6	0.44	9.6	1.0	5.4	2	2	2	5	5	5	0	Reovirus	sigma	C	capsid	protein
CENP-F_leu_zip	PF10473.4	gi|385803100|ref|YP_005839500.1|	-	0.79	9.5	105.9	0.019	14.8	4.2	7.1	2	2	4	6	6	6	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
AAA_22	PF13401.1	gi|385803100|ref|YP_005839500.1|	-	0.79	9.8	0.0	0.79	9.8	0.0	3.7	4	2	0	4	4	4	0	AAA	domain
Atg14	PF10186.4	gi|385803100|ref|YP_005839500.1|	-	1.2	7.9	86.5	0.19	10.6	10.9	5.2	1	1	4	5	5	5	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
NPV_P10	PF05531.7	gi|385803100|ref|YP_005839500.1|	-	1.3	9.2	42.6	0.078	13.2	1.5	7.8	4	2	3	7	7	7	0	Nucleopolyhedrovirus	P10	protein
AAA_27	PF13514.1	gi|385803100|ref|YP_005839500.1|	-	7.8	4.0	110.1	0.59	7.7	0.0	4.7	2	1	0	2	2	1	0	AAA	domain
Phytase	PF02333.10	gi|385803101|ref|YP_005839501.1|	-	0.058	12.1	0.0	0.068	11.8	0.0	1.2	1	0	0	1	1	1	0	Phytase
Zip	PF02535.17	gi|385803102|ref|YP_005839502.1|	-	0.22	10.5	1.1	5	6.0	1.1	1.9	1	1	1	2	2	2	0	ZIP	Zinc	transporter
DNA_pol_B	PF00136.16	gi|385803104|ref|YP_005839504.1|	-	3.8e-48	164.4	0.0	1.8e-17	63.2	0.0	3.2	3	0	0	3	3	3	3	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.14	gi|385803104|ref|YP_005839504.1|	-	1.4e-28	99.7	0.0	4.6e-20	71.7	0.0	2.5	2	0	0	2	2	2	2	DNA	polymerase	family	B,	exonuclease	domain
Hint	PF01079.15	gi|385803104|ref|YP_005839504.1|	-	7.2e-12	44.9	0.0	1.5e-05	24.2	0.0	2.3	2	0	0	2	2	2	2	Hint	module
LAGLIDADG_3	PF14528.1	gi|385803104|ref|YP_005839504.1|	-	2.4e-09	37.3	0.0	0.08	13.1	0.0	4.8	5	0	0	5	5	5	3	LAGLIDADG-like	domain
Hint_2	PF13403.1	gi|385803104|ref|YP_005839504.1|	-	2.3e-08	34.0	0.1	3.7e-06	26.9	0.0	3.3	3	1	0	3	3	3	1	Hint	domain
PT-HINT	PF07591.6	gi|385803104|ref|YP_005839504.1|	-	4.6e-05	23.3	0.3	0.0025	17.7	0.0	3.4	3	0	0	3	3	3	1	Pretoxin	HINT	domain
Hom_end_hint	PF05203.11	gi|385803104|ref|YP_005839504.1|	-	5.2e-05	23.0	0.1	0.0061	16.3	0.0	3.1	2	1	0	2	2	2	1	Hom_end-associated	Hint
Hom_end	PF05204.9	gi|385803104|ref|YP_005839504.1|	-	0.00027	20.8	0.0	0.014	15.3	0.0	3.0	3	0	0	3	3	3	1	Homing	endonuclease
Intein_splicing	PF14890.1	gi|385803104|ref|YP_005839504.1|	-	0.0015	17.5	0.3	1.9	7.2	0.0	4.2	4	0	0	4	4	4	1	Intein	splicing	domain
ABC_tran	PF00005.22	gi|385803105|ref|YP_005839505.1|	-	1.7e-14	54.2	0.2	9.5e-14	51.8	0.2	2.0	1	1	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.14	gi|385803105|ref|YP_005839505.1|	-	2.4e-05	23.6	0.6	0.091	11.9	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.1	gi|385803105|ref|YP_005839505.1|	-	4.3e-05	23.6	0.2	0.00062	19.8	0.2	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|385803105|ref|YP_005839505.1|	-	7.2e-05	23.5	2.4	0.00088	20.0	0.2	2.8	1	1	0	2	2	2	1	AAA	domain
AAA	PF00004.24	gi|385803105|ref|YP_005839505.1|	-	0.00037	20.7	0.1	0.13	12.4	0.0	2.4	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_23	PF13476.1	gi|385803105|ref|YP_005839505.1|	-	0.00085	19.7	3.6	0.12	12.7	0.0	2.4	2	1	0	2	2	2	2	AAA	domain
AAA_5	PF07728.9	gi|385803105|ref|YP_005839505.1|	-	0.0021	17.7	0.5	1.2	8.8	0.0	2.6	2	1	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_29	PF13555.1	gi|385803105|ref|YP_005839505.1|	-	0.0023	17.4	0.0	0.0043	16.5	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.1	gi|385803105|ref|YP_005839505.1|	-	0.0059	16.7	0.4	0.41	10.8	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_33	PF13671.1	gi|385803105|ref|YP_005839505.1|	-	0.015	15.1	0.0	0.023	14.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.1	gi|385803105|ref|YP_005839505.1|	-	0.022	14.1	0.0	0.068	12.5	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_13	PF13166.1	gi|385803105|ref|YP_005839505.1|	-	0.065	11.6	0.0	0.1	11.0	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.1	gi|385803105|ref|YP_005839505.1|	-	0.077	12.9	0.2	1.3	9.0	0.0	2.6	3	0	0	3	3	3	0	AAA	domain
AAA_18	PF13238.1	gi|385803105|ref|YP_005839505.1|	-	2	8.7	5.3	3	8.1	2.2	2.4	2	1	0	2	2	2	0	AAA	domain
UPF0051	PF01458.12	gi|385803106|ref|YP_005839506.1|	-	2.6e-69	233.1	0.5	3.6e-69	232.7	0.3	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
UPF0051	PF01458.12	gi|385803107|ref|YP_005839507.1|	-	5.5e-63	212.4	0.2	7.9e-63	211.9	0.1	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
HrpA_pilin	PF09589.5	gi|385803108|ref|YP_005839508.1|	-	0.041	14.3	0.0	0.16	12.3	0.0	1.9	1	1	1	2	2	2	0	HrpA	pilus	formation	protein
Rubrerythrin	PF02915.12	gi|385803108|ref|YP_005839508.1|	-	0.045	14.0	0.1	0.079	13.2	0.1	1.5	1	1	0	1	1	1	0	Rubrerythrin
Fe_dep_repress	PF01325.14	gi|385803109|ref|YP_005839509.1|	-	1.4e-14	53.7	0.0	2.7e-14	52.8	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Fe_dep_repr_C	PF02742.10	gi|385803109|ref|YP_005839509.1|	-	1.6e-09	37.2	0.1	2.6e-09	36.6	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
HTH_27	PF13463.1	gi|385803109|ref|YP_005839509.1|	-	2.1e-05	24.7	0.1	6.1e-05	23.2	0.0	1.7	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.2	gi|385803109|ref|YP_005839509.1|	-	3.2e-05	23.4	0.0	5.4e-05	22.7	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|385803109|ref|YP_005839509.1|	-	7.4e-05	22.0	0.0	0.00014	21.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|385803109|ref|YP_005839509.1|	-	0.00015	21.5	0.0	0.00034	20.3	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.17	gi|385803109|ref|YP_005839509.1|	-	0.00019	21.0	0.0	0.00033	20.2	0.0	1.4	1	0	0	1	1	1	1	MarR	family
FeoC	PF09012.5	gi|385803109|ref|YP_005839509.1|	-	0.0027	17.3	0.0	0.026	14.2	0.0	2.1	2	0	0	2	2	2	1	FeoC	like	transcriptional	regulator
HTH_Crp_2	PF13545.1	gi|385803109|ref|YP_005839509.1|	-	0.0028	17.3	0.0	0.0053	16.5	0.0	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Rrf2	PF02082.15	gi|385803109|ref|YP_005839509.1|	-	0.0036	17.3	0.0	0.0071	16.4	0.0	1.5	1	1	0	1	1	1	1	Transcriptional	regulator
TrmB	PF01978.14	gi|385803109|ref|YP_005839509.1|	-	0.0047	16.6	0.0	0.0088	15.7	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_13	PF11972.3	gi|385803109|ref|YP_005839509.1|	-	0.011	15.5	0.0	0.022	14.6	0.0	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_12	PF08461.5	gi|385803109|ref|YP_005839509.1|	-	0.033	13.9	0.3	0.097	12.4	0.0	2.0	2	1	0	2	2	2	0	Ribonuclease	R	winged-helix	domain
HTH_45	PF14947.1	gi|385803109|ref|YP_005839509.1|	-	0.043	13.6	0.0	0.067	13.0	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix
DUF4423	PF14394.1	gi|385803109|ref|YP_005839509.1|	-	0.075	12.5	0.0	0.12	11.9	0.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HemN_C	PF06969.11	gi|385803109|ref|YP_005839509.1|	-	0.077	13.0	0.0	2.2	8.4	0.0	2.5	3	0	0	3	3	3	0	HemN	C-terminal	domain
Ftsk_gamma	PF09397.5	gi|385803109|ref|YP_005839509.1|	-	0.092	12.4	0.0	0.16	11.7	0.0	1.4	1	0	0	1	1	1	0	Ftsk	gamma	domain
DUF1405	PF07187.6	gi|385803110|ref|YP_005839510.1|	-	9.8e-53	178.2	12.0	1.4e-52	177.7	8.3	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1405)
HD	PF01966.17	gi|385803111|ref|YP_005839511.1|	-	2.3e-12	46.9	0.3	1.2e-11	44.6	0.1	1.9	2	0	0	2	2	2	1	HD	domain
DUF305	PF03713.8	gi|385803111|ref|YP_005839511.1|	-	0.043	13.6	0.5	0.099	12.4	0.1	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF305)
Glu_synthase	PF01645.12	gi|385803112|ref|YP_005839512.1|	-	2.7e-153	510.2	0.4	1.4e-151	504.5	0.1	2.2	2	0	0	2	2	2	2	Conserved	region	in	glutamate	synthase
GATase_2	PF00310.16	gi|385803112|ref|YP_005839512.1|	-	4.4e-126	420.4	0.0	2e-125	418.2	0.0	2.0	2	0	0	2	2	2	1	Glutamine	amidotransferases	class-II
Glu_syn_central	PF04898.9	gi|385803112|ref|YP_005839512.1|	-	7e-109	363.5	0.0	1.1e-108	362.9	0.0	1.3	1	0	0	1	1	1	1	Glutamate	synthase	central	domain
GXGXG	PF01493.14	gi|385803112|ref|YP_005839512.1|	-	1e-60	204.2	6.8	2e-60	203.2	4.7	1.5	1	0	0	1	1	1	1	GXGXG	motif
FMN_dh	PF01070.13	gi|385803112|ref|YP_005839512.1|	-	0.0013	17.6	3.4	0.076	11.8	1.1	3.1	3	0	0	3	3	3	1	FMN-dependent	dehydrogenase
HGTP_anticodon	PF03129.15	gi|385803113|ref|YP_005839513.1|	-	1.2e-22	79.6	0.1	2.1e-22	78.8	0.0	1.5	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.20	gi|385803113|ref|YP_005839513.1|	-	3.9e-17	62.3	0.0	8e-17	61.3	0.0	1.5	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
ProRS-C_1	PF09180.6	gi|385803113|ref|YP_005839513.1|	-	3.5e-15	55.6	0.6	2.1e-08	33.9	0.0	2.6	2	0	0	2	2	2	2	Prolyl-tRNA	synthetase,	C-terminal
Beta-Casp	PF10996.3	gi|385803114|ref|YP_005839514.1|	-	1.6e-33	115.3	0.0	3.3e-33	114.3	0.0	1.6	1	0	0	1	1	1	1	Beta-Casp	domain
Lactamase_B	PF00753.22	gi|385803114|ref|YP_005839514.1|	-	3.2e-23	82.4	3.6	6.4e-23	81.4	2.5	1.5	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
RMMBL	PF07521.7	gi|385803114|ref|YP_005839514.1|	-	3.7e-13	49.0	0.0	1.6e-12	47.0	0.0	2.1	2	0	0	2	2	2	1	RNA-metabolising	metallo-beta-lactamase
Lactamase_B_2	PF12706.2	gi|385803114|ref|YP_005839514.1|	-	1.7e-12	47.3	0.3	2.9e-11	43.2	0.1	2.7	3	0	0	3	3	3	1	Beta-lactamase	superfamily	domain
KH_2	PF07650.12	gi|385803114|ref|YP_005839514.1|	-	5.3e-08	32.3	0.0	3.3e-07	29.7	0.0	2.1	2	0	0	2	2	2	1	KH	domain
Lactamase_B_3	PF13483.1	gi|385803114|ref|YP_005839514.1|	-	6.2e-05	22.7	0.0	0.00017	21.3	0.0	1.6	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
KH_1	PF00013.24	gi|385803114|ref|YP_005839514.1|	-	6.7e-05	22.4	0.2	0.00017	21.1	0.1	1.7	1	0	0	1	1	1	1	KH	domain
KH_4	PF13083.1	gi|385803114|ref|YP_005839514.1|	-	0.0067	16.0	0.1	0.016	14.8	0.1	1.6	1	0	0	1	1	1	1	KH	domain
KH_3	PF13014.1	gi|385803114|ref|YP_005839514.1|	-	0.012	15.2	1.1	0.029	14.0	0.8	1.6	1	0	0	1	1	1	0	KH	domain
DHquinase_II	PF01220.14	gi|385803114|ref|YP_005839514.1|	-	0.14	11.4	0.0	0.26	10.5	0.0	1.4	1	0	0	1	1	1	0	Dehydroquinase	class	II
HpcH_HpaI	PF03328.9	gi|385803118|ref|YP_005839518.1|	-	4.2e-07	29.0	0.0	1.3e-06	27.4	0.0	1.7	2	0	0	2	2	2	1	HpcH/HpaI	aldolase/citrate	lyase	family
Toxin_65	PF15543.1	gi|385803118|ref|YP_005839518.1|	-	0.12	11.9	0.0	0.22	11.1	0.0	1.4	1	0	0	1	1	1	0	Putative	toxin	65
Glyoxalase_2	PF12681.2	gi|385803119|ref|YP_005839519.1|	-	3.7e-15	56.4	0.3	4.4e-15	56.2	0.2	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase	PF00903.20	gi|385803119|ref|YP_005839519.1|	-	3.9e-15	55.9	0.2	4.6e-15	55.7	0.2	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.1	gi|385803119|ref|YP_005839519.1|	-	4.5e-11	42.7	0.2	7e-10	38.8	0.1	2.0	1	1	1	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.1	gi|385803119|ref|YP_005839519.1|	-	0.00039	20.3	0.1	0.026	14.4	0.0	2.1	2	0	0	2	2	2	1	Glyoxalase-like	domain
Acetyltransf_10	PF13673.1	gi|385803119|ref|YP_005839519.1|	-	0.083	13.0	0.0	6.4	6.9	0.0	2.1	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
FAA_hydrolase	PF01557.13	gi|385803120|ref|YP_005839520.1|	-	1.1e-51	175.4	0.0	1.3e-51	175.1	0.0	1.0	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
UAF_Rrn10	PF05234.6	gi|385803121|ref|YP_005839521.1|	-	0.051	13.6	0.9	0.063	13.3	0.6	1.1	1	0	0	1	1	1	0	UAF	complex	subunit	Rrn10
CaATP_NAI	PF12515.3	gi|385803121|ref|YP_005839521.1|	-	0.64	9.5	2.4	15	5.1	0.0	2.8	3	0	0	3	3	3	0	Ca2+-ATPase	N	terminal	autoinhibitory	domain
TrmB	PF01978.14	gi|385803122|ref|YP_005839522.1|	-	1e-15	57.1	0.0	1.4e-15	56.7	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.7	gi|385803122|ref|YP_005839522.1|	-	5.1e-06	26.0	0.0	8.2e-06	25.3	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
MarR	PF01047.17	gi|385803122|ref|YP_005839522.1|	-	6.1e-06	25.8	0.0	1.1e-05	25.0	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.5	gi|385803122|ref|YP_005839522.1|	-	2.1e-05	24.0	0.0	3.4e-05	23.3	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|385803122|ref|YP_005839522.1|	-	5.3e-05	22.8	0.0	8.6e-05	22.1	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.2	gi|385803122|ref|YP_005839522.1|	-	6e-05	22.7	0.0	0.0001	22.0	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
Penicillinase_R	PF03965.11	gi|385803122|ref|YP_005839522.1|	-	6.3e-05	23.0	0.0	9e-05	22.5	0.0	1.2	1	0	0	1	1	1	1	Penicillinase	repressor
HTH_24	PF13412.1	gi|385803122|ref|YP_005839522.1|	-	0.00075	18.8	0.0	0.0014	17.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.1	gi|385803122|ref|YP_005839522.1|	-	0.0017	18.6	0.0	0.0025	18.0	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_38	PF13936.1	gi|385803122|ref|YP_005839522.1|	-	0.0018	17.8	0.0	0.0032	16.9	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
RuvB_C	PF05491.8	gi|385803122|ref|YP_005839522.1|	-	0.002	17.6	0.0	0.0033	17.0	0.0	1.3	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	C-terminus
HARE-HTH	PF05066.8	gi|385803122|ref|YP_005839522.1|	-	0.0061	16.8	0.0	0.015	15.6	0.0	1.6	1	0	0	1	1	1	1	HB1,	ASXL,	restriction	endonuclease	HTH	domain
HTH_5	PF01022.15	gi|385803122|ref|YP_005839522.1|	-	0.0084	15.7	0.0	0.014	15.0	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_29	PF13551.1	gi|385803122|ref|YP_005839522.1|	-	0.011	15.8	0.0	0.017	15.2	0.0	1.5	1	1	0	1	1	1	0	Winged	helix-turn	helix
Rrf2	PF02082.15	gi|385803122|ref|YP_005839522.1|	-	0.021	14.9	0.0	0.037	14.1	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
Rio2_N	PF09202.6	gi|385803122|ref|YP_005839522.1|	-	0.053	13.5	0.1	0.15	12.1	0.1	1.7	1	1	0	1	1	1	0	Rio2,	N-terminal
DUF387	PF04079.11	gi|385803122|ref|YP_005839522.1|	-	0.054	12.8	0.3	0.25	10.7	0.0	2.0	1	1	1	2	2	2	0	Putative	transcriptional	regulators	(Ypuh-like)
HTH_23	PF13384.1	gi|385803122|ref|YP_005839522.1|	-	0.059	13.0	0.0	0.11	12.1	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
Fe_dep_repress	PF01325.14	gi|385803122|ref|YP_005839522.1|	-	0.064	13.2	0.0	0.12	12.3	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
eIF-1a	PF01176.14	gi|385803123|ref|YP_005839523.1|	-	7e-24	83.0	0.4	8.7e-24	82.7	0.3	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
Glycos_transf_1	PF00534.15	gi|385803124|ref|YP_005839524.1|	-	2.5e-08	33.5	0.0	4.2e-08	32.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|385803124|ref|YP_005839524.1|	-	4e-06	27.0	0.0	8.1e-06	26.0	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|385803124|ref|YP_005839524.1|	-	0.024	14.3	0.2	1.5	8.4	0.0	2.7	3	1	0	3	3	3	0	Glycosyltransferase	Family	4
Aldo_ket_red	PF00248.16	gi|385803125|ref|YP_005839525.1|	-	2.6e-49	167.5	0.0	1.9e-47	161.4	0.0	2.1	2	0	0	2	2	2	2	Aldo/keto	reductase	family
GFO_IDH_MocA	PF01408.17	gi|385803125|ref|YP_005839525.1|	-	3.5e-19	69.4	0.1	2.2e-18	66.9	0.0	2.3	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
NAD_binding_3	PF03447.11	gi|385803125|ref|YP_005839525.1|	-	8.8e-09	35.7	0.2	2.2e-08	34.5	0.2	1.6	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
Saccharop_dh	PF03435.13	gi|385803125|ref|YP_005839525.1|	-	0.74	8.7	2.7	2.1	7.2	1.0	2.3	2	1	1	3	3	3	0	Saccharopine	dehydrogenase
CDP-OH_P_transf	PF01066.16	gi|385803126|ref|YP_005839526.1|	-	9.6e-13	48.3	2.2	9.6e-13	48.3	1.5	2.2	3	0	0	3	3	3	1	CDP-alcohol	phosphatidyltransferase
AAA_16	PF13191.1	gi|385803127|ref|YP_005839527.1|	-	1.7e-12	47.7	0.5	1.1e-11	45.1	0.1	2.4	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|385803127|ref|YP_005839527.1|	-	9.3e-09	35.5	0.0	3.1e-08	33.8	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
Arch_ATPase	PF01637.13	gi|385803127|ref|YP_005839527.1|	-	0.018	14.7	0.0	0.03	14.0	0.0	1.3	1	0	0	1	1	1	0	Archaeal	ATPase
Phe_tRNA-synt_N	PF02912.13	gi|385803127|ref|YP_005839527.1|	-	0.02	14.6	0.0	0.19	11.4	0.0	2.2	2	0	0	2	2	2	0	Aminoacyl	tRNA	synthetase	class	II,	N-terminal	domain
KAP_NTPase	PF07693.9	gi|385803127|ref|YP_005839527.1|	-	0.15	10.9	0.0	0.2	10.6	0.0	1.4	1	1	0	1	1	1	0	KAP	family	P-loop	domain
FGGY_N	PF00370.16	gi|385803129|ref|YP_005839529.1|	-	9.3e-74	247.8	0.0	1.3e-73	247.3	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
FGGY_C	PF02782.11	gi|385803129|ref|YP_005839529.1|	-	5.5e-56	189.3	2.4	8.6e-56	188.7	1.1	1.8	2	0	0	2	2	2	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
BcrAD_BadFG	PF01869.15	gi|385803129|ref|YP_005839529.1|	-	0.00043	19.6	0.3	0.0036	16.6	0.0	2.1	2	0	0	2	2	2	1	BadF/BadG/BcrA/BcrD	ATPase	family
DAO	PF01266.19	gi|385803130|ref|YP_005839530.1|	-	5.3e-59	199.9	1.8	7.6e-59	199.4	1.2	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|385803130|ref|YP_005839530.1|	-	7.1e-08	32.5	0.0	2.5e-05	24.2	0.0	2.2	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Fer2_BFD	PF04324.10	gi|385803130|ref|YP_005839530.1|	-	7.5e-08	32.3	1.5	2.1e-07	30.8	1.0	1.8	1	0	0	1	1	1	1	BFD-like	[2Fe-2S]	binding	domain
FAD_binding_2	PF00890.19	gi|385803130|ref|YP_005839530.1|	-	3e-05	23.0	7.0	0.00022	20.2	4.9	2.0	1	1	0	1	1	1	1	FAD	binding	domain
3HCDH_N	PF02737.13	gi|385803130|ref|YP_005839530.1|	-	0.016	14.9	0.4	0.034	13.8	0.3	1.6	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pyr_redox_3	PF13738.1	gi|385803130|ref|YP_005839530.1|	-	0.02	14.9	0.2	1.4	8.9	0.1	2.5	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|385803130|ref|YP_005839530.1|	-	0.046	13.7	1.1	0.14	12.1	0.6	1.9	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
NAD_binding_10	PF13460.1	gi|385803130|ref|YP_005839530.1|	-	0.062	13.2	2.6	0.17	11.9	0.7	2.4	2	0	0	2	2	2	0	NADH(P)-binding
Pyr_redox	PF00070.22	gi|385803130|ref|YP_005839530.1|	-	0.11	12.8	1.1	0.44	10.9	0.8	2.0	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|385803130|ref|YP_005839530.1|	-	0.28	10.1	8.0	3.3	6.6	5.5	2.1	1	1	0	1	1	1	0	FAD	binding	domain
Thi4	PF01946.12	gi|385803130|ref|YP_005839530.1|	-	0.99	8.4	7.2	0.89	8.6	0.1	2.5	3	0	0	3	3	3	0	Thi4	family
FAD_binding_2	PF00890.19	gi|385803131|ref|YP_005839531.1|	-	9.8e-42	143.2	0.9	1.3e-41	142.8	0.6	1.1	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|385803131|ref|YP_005839531.1|	-	3.9e-07	30.1	0.1	0.00074	19.4	0.0	2.4	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|385803131|ref|YP_005839531.1|	-	1.3e-06	27.5	0.7	0.00027	19.9	0.4	2.3	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
GIDA	PF01134.17	gi|385803131|ref|YP_005839531.1|	-	3.8e-06	26.0	0.4	3.8e-06	26.0	0.3	2.4	3	0	0	3	3	3	1	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.2	gi|385803131|ref|YP_005839531.1|	-	0.00011	21.4	1.7	0.0002	20.5	0.8	1.7	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|385803131|ref|YP_005839531.1|	-	0.00088	18.4	0.2	0.0033	16.5	0.2	1.7	2	0	0	2	2	2	1	FAD	binding	domain
HI0933_like	PF03486.9	gi|385803131|ref|YP_005839531.1|	-	0.0016	16.9	0.2	0.005	15.3	0.1	1.8	2	0	0	2	2	2	1	HI0933-like	protein
NAD_binding_8	PF13450.1	gi|385803131|ref|YP_005839531.1|	-	0.0027	17.6	1.1	0.016	15.1	0.3	2.4	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
3HCDH_N	PF02737.13	gi|385803131|ref|YP_005839531.1|	-	0.011	15.4	0.2	0.018	14.7	0.1	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Lycopene_cycl	PF05834.7	gi|385803131|ref|YP_005839531.1|	-	0.021	13.7	0.2	0.033	13.0	0.2	1.3	1	0	0	1	1	1	0	Lycopene	cyclase	protein
Thi4	PF01946.12	gi|385803131|ref|YP_005839531.1|	-	0.025	13.6	0.2	0.05	12.6	0.1	1.5	1	0	0	1	1	1	0	Thi4	family
Pyr_redox	PF00070.22	gi|385803131|ref|YP_005839531.1|	-	0.03	14.7	0.0	0.099	13.0	0.1	1.8	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
CCG	PF02754.11	gi|385803132|ref|YP_005839532.1|	-	9.9e-20	70.3	0.9	2.1e-09	37.2	0.0	2.6	2	0	0	2	2	2	2	Cysteine-rich	domain
Fer4_8	PF13183.1	gi|385803132|ref|YP_005839532.1|	-	2.4e-08	33.8	7.0	2.4e-08	33.8	4.9	2.9	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|385803132|ref|YP_005839532.1|	-	2.7e-07	30.8	6.5	2.7e-07	30.8	4.5	3.3	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|385803132|ref|YP_005839532.1|	-	1.5e-06	28.5	4.6	0.0091	16.3	0.2	3.7	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|385803132|ref|YP_005839532.1|	-	0.00017	21.7	14.0	0.0037	17.4	8.3	3.6	3	1	1	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|385803132|ref|YP_005839532.1|	-	0.00044	20.9	9.5	0.042	14.5	0.2	3.5	4	0	0	4	4	4	2	4Fe-4S	double	cluster	binding	domain
Fer4_7	PF12838.2	gi|385803132|ref|YP_005839532.1|	-	0.0006	20.1	9.9	0.0006	20.1	6.8	2.8	3	1	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|385803132|ref|YP_005839532.1|	-	0.00064	19.4	18.9	0.00085	19.0	9.1	3.4	3	1	1	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|385803132|ref|YP_005839532.1|	-	0.0022	17.7	7.5	0.1	12.4	0.5	3.4	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
PhoU	PF01895.14	gi|385803133|ref|YP_005839533.1|	-	1.2e-32	112.1	8.6	2.9e-19	69.3	0.3	2.2	2	0	0	2	2	2	2	PhoU	domain
HrpB7	PF09486.5	gi|385803134|ref|YP_005839534.1|	-	0.9	9.4	6.1	0.29	11.0	1.1	2.3	3	0	0	3	3	3	0	Bacterial	type	III	secretion	protein	(HrpB7)
PAS_9	PF13426.1	gi|385803135|ref|YP_005839535.1|	-	6.6e-54	180.6	9.1	8.7e-13	48.5	0.0	6.8	6	0	0	6	6	6	6	PAS	domain
PAS_3	PF08447.6	gi|385803135|ref|YP_005839535.1|	-	6.5e-37	125.5	11.7	4.6e-12	45.8	0.0	7.3	7	0	0	7	7	7	5	PAS	fold
PAS_4	PF08448.5	gi|385803135|ref|YP_005839535.1|	-	4.8e-28	97.3	6.5	2.4e-05	24.3	0.0	7.9	7	0	0	7	7	7	6	PAS	fold
PAS	PF00989.19	gi|385803135|ref|YP_005839535.1|	-	1.5e-27	95.5	8.7	1.7e-06	27.7	0.0	8.4	7	2	0	7	7	7	4	PAS	fold
PAS_8	PF13188.1	gi|385803135|ref|YP_005839535.1|	-	4.2e-25	86.6	0.5	4.4e-07	29.5	0.0	6.4	6	0	0	6	6	6	4	PAS	domain
HTH_10	PF04967.7	gi|385803135|ref|YP_005839535.1|	-	2.4e-16	59.0	0.0	5.7e-16	57.8	0.0	1.7	1	0	0	1	1	1	1	HTH	DNA	binding	domain
GAF_2	PF13185.1	gi|385803135|ref|YP_005839535.1|	-	2.5e-10	41.0	5.5	8.2e-08	32.8	0.1	4.0	4	0	0	4	4	4	1	GAF	domain
GAF_3	PF13492.1	gi|385803135|ref|YP_005839535.1|	-	1.6e-09	37.9	0.4	0.04	14.0	0.0	3.8	3	0	0	3	3	3	3	GAF	domain
GAF	PF01590.21	gi|385803135|ref|YP_005839535.1|	-	2.4e-05	24.5	0.6	0.00032	20.8	0.0	3.2	4	0	0	4	4	4	1	GAF	domain
HTH_22	PF13309.1	gi|385803135|ref|YP_005839535.1|	-	0.0074	16.0	0.1	0.18	11.5	0.0	3.0	3	0	0	3	3	3	1	HTH	domain
TrmB	PF01978.14	gi|385803136|ref|YP_005839536.1|	-	6.1e-07	29.0	0.0	9e-07	28.5	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.15	gi|385803136|ref|YP_005839536.1|	-	1.3e-05	24.7	0.0	1.8e-05	24.2	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.2	gi|385803136|ref|YP_005839536.1|	-	1.7e-05	24.3	0.0	3.1e-05	23.5	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|385803136|ref|YP_005839536.1|	-	3.4e-05	23.1	0.0	6.7e-05	22.1	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|385803136|ref|YP_005839536.1|	-	5.8e-05	22.8	0.0	0.00015	21.4	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|385803136|ref|YP_005839536.1|	-	0.00089	18.8	0.0	0.0014	18.2	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_IclR	PF09339.5	gi|385803136|ref|YP_005839536.1|	-	0.0012	18.4	0.0	0.0019	17.7	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.17	gi|385803136|ref|YP_005839536.1|	-	0.0028	17.3	0.0	0.0059	16.2	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_28	PF13518.1	gi|385803136|ref|YP_005839536.1|	-	0.0037	17.2	0.0	0.0068	16.3	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HxlR	PF01638.12	gi|385803136|ref|YP_005839536.1|	-	0.0052	16.3	0.0	0.0079	15.8	0.0	1.3	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_AsnC-type	PF13404.1	gi|385803136|ref|YP_005839536.1|	-	0.0075	15.7	0.1	0.014	14.9	0.1	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_29	PF13551.1	gi|385803136|ref|YP_005839536.1|	-	0.015	15.4	0.0	0.026	14.6	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn	helix
PadR	PF03551.9	gi|385803136|ref|YP_005839536.1|	-	0.022	14.5	0.0	0.034	13.9	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
GntR	PF00392.16	gi|385803136|ref|YP_005839536.1|	-	0.025	13.9	0.0	0.049	13.0	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_11	PF08279.7	gi|385803136|ref|YP_005839536.1|	-	0.031	13.9	0.0	0.054	13.1	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
FUR	PF01475.14	gi|385803136|ref|YP_005839536.1|	-	0.05	13.5	0.0	0.1	12.5	0.0	1.5	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
HTH_36	PF13730.1	gi|385803136|ref|YP_005839536.1|	-	0.057	13.5	0.0	0.095	12.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_38	PF13936.1	gi|385803136|ref|YP_005839536.1|	-	0.19	11.3	0.9	0.35	10.4	0.2	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_20	PF12840.2	gi|385803138|ref|YP_005839538.1|	-	4.8e-06	26.2	0.1	6.7e-06	25.8	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|385803138|ref|YP_005839538.1|	-	2.2e-05	23.7	0.0	3.4e-05	23.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.5	gi|385803138|ref|YP_005839538.1|	-	0.00024	20.6	0.0	0.00035	20.0	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|385803138|ref|YP_005839538.1|	-	0.00028	20.4	0.0	0.0004	19.9	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.15	gi|385803138|ref|YP_005839538.1|	-	0.00032	20.2	0.0	0.00048	19.7	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.14	gi|385803138|ref|YP_005839538.1|	-	0.0023	17.5	0.0	0.0037	16.9	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|385803138|ref|YP_005839538.1|	-	0.0049	16.5	0.0	0.0078	15.9	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.7	gi|385803138|ref|YP_005839538.1|	-	0.01	15.4	0.0	0.016	14.8	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
HTH_36	PF13730.1	gi|385803138|ref|YP_005839538.1|	-	0.056	13.5	0.0	0.086	12.9	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
PadR	PF03551.9	gi|385803138|ref|YP_005839538.1|	-	0.081	12.7	0.0	0.17	11.6	0.0	1.5	2	0	0	2	2	2	0	Transcriptional	regulator	PadR-like	family
HTH_AsnC-type	PF13404.1	gi|385803138|ref|YP_005839538.1|	-	0.12	11.8	0.1	0.22	11.0	0.0	1.5	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_23	PF13384.1	gi|385803138|ref|YP_005839538.1|	-	0.14	11.8	0.0	0.22	11.2	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
PP_kinase_C	PF13090.1	gi|385803139|ref|YP_005839539.1|	-	3.6e-153	509.3	0.0	5e-153	508.8	0.0	1.2	1	0	0	1	1	1	1	Polyphosphate	kinase	C-terminal	domain
PP_kinase	PF02503.12	gi|385803139|ref|YP_005839539.1|	-	3.8e-65	219.2	4.2	6e-65	218.6	2.9	1.3	1	0	0	1	1	1	1	Polyphosphate	kinase	middle	domain
PP_kinase_N	PF13089.1	gi|385803139|ref|YP_005839539.1|	-	8.1e-37	125.6	0.1	3e-36	123.8	0.0	2.1	2	0	0	2	2	2	1	Polyphosphate	kinase	N-terminal	domain
PLDc_2	PF13091.1	gi|385803139|ref|YP_005839539.1|	-	1e-10	41.4	0.0	3.4e-06	26.8	0.0	2.5	2	0	0	2	2	2	2	PLD-like	domain
zf-TFIIB	PF13453.1	gi|385803141|ref|YP_005839541.1|	-	0.00028	20.0	1.5	0.00048	19.2	1.1	1.4	1	0	0	1	1	1	1	Transcription	factor	zinc-finger
DZR	PF12773.2	gi|385803141|ref|YP_005839541.1|	-	0.00059	19.5	0.4	0.0011	18.7	0.3	1.5	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-FPG_IleRS	PF06827.9	gi|385803141|ref|YP_005839541.1|	-	0.0011	18.5	1.0	0.0019	17.7	0.7	1.4	1	0	0	1	1	1	1	Zinc	finger	found	in	FPG	and	IleRS
Lar_restr_allev	PF14354.1	gi|385803141|ref|YP_005839541.1|	-	0.0016	18.6	1.1	0.003	17.8	0.8	1.6	1	1	0	1	1	1	1	Restriction	alleviation	protein	Lar
zf-ribbon_3	PF13248.1	gi|385803141|ref|YP_005839541.1|	-	0.002	17.2	2.6	0.006	15.7	1.9	1.8	1	1	0	1	1	1	1	zinc-ribbon	domain
Nudix_N_2	PF14803.1	gi|385803141|ref|YP_005839541.1|	-	0.01	15.5	1.0	1.2	8.9	0.0	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
zinc_ribbon_2	PF13240.1	gi|385803141|ref|YP_005839541.1|	-	0.011	15.1	3.7	0.51	9.8	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF3994	PF13159.1	gi|385803141|ref|YP_005839541.1|	-	0.014	15.6	3.8	0.019	15.1	2.6	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3994)
UPF0547	PF10571.4	gi|385803141|ref|YP_005839541.1|	-	0.015	14.9	1.0	0.039	13.6	0.7	1.6	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
Elf1	PF05129.8	gi|385803141|ref|YP_005839541.1|	-	0.045	13.4	0.1	0.07	12.8	0.0	1.4	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
DUF3797	PF12677.2	gi|385803141|ref|YP_005839541.1|	-	0.064	12.8	0.1	1.2	8.8	0.0	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
DUF2387	PF09526.5	gi|385803141|ref|YP_005839541.1|	-	0.064	13.1	1.4	0.11	12.3	0.1	1.9	1	1	1	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
Ribosomal_S27e	PF01667.12	gi|385803141|ref|YP_005839541.1|	-	0.1	12.1	0.7	0.15	11.6	0.5	1.2	1	0	0	1	1	1	0	Ribosomal	protein	S27
ComA	PF02679.10	gi|385803141|ref|YP_005839541.1|	-	0.14	11.1	0.0	0.15	11.0	0.0	1.1	1	0	0	1	1	1	0	(2R)-phospho-3-sulfolactate	synthase	(ComA)
OrfB_Zn_ribbon	PF07282.6	gi|385803141|ref|YP_005839541.1|	-	0.15	11.7	0.4	0.29	10.8	0.3	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.7	gi|385803141|ref|YP_005839541.1|	-	0.23	10.8	3.2	0.44	9.9	2.2	1.6	1	1	0	1	1	1	0	TFIIB	zinc-binding
zf-NADH-PPase	PF09297.6	gi|385803141|ref|YP_005839541.1|	-	2.3	7.7	5.4	14	5.3	3.8	2.1	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
Actin	PF00022.14	gi|385803142|ref|YP_005839542.1|	-	0.02	13.3	0.0	0.23	9.8	0.0	2.1	2	0	0	2	2	2	0	Actin
AF1Q	PF15017.1	gi|385803143|ref|YP_005839543.1|	-	0.45	10.4	6.5	2.9	7.8	0.1	2.3	2	0	0	2	2	2	0	Drug	resistance	and	apoptosis	regulator
DUF2721	PF11026.3	gi|385803143|ref|YP_005839543.1|	-	3.5	7.2	7.4	3.3	7.3	0.1	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2721)
DUF58	PF01882.13	gi|385803144|ref|YP_005839544.1|	-	7.2e-17	61.3	0.1	1.5e-16	60.3	0.1	1.7	1	1	0	1	1	1	1	Protein	of	unknown	function	DUF58
VWA_2	PF13519.1	gi|385803144|ref|YP_005839544.1|	-	3.9e-05	23.8	0.0	5.2e-05	23.4	0.0	1.3	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.9	gi|385803144|ref|YP_005839544.1|	-	0.00037	19.6	0.0	0.019	14.1	0.0	2.1	2	0	0	2	2	2	2	VWA	domain	containing	CoxE-like	protein
AAA_3	PF07726.6	gi|385803145|ref|YP_005839545.1|	-	6.2e-62	207.0	0.1	9e-62	206.4	0.1	1.2	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|385803145|ref|YP_005839545.1|	-	6.8e-11	42.0	0.0	1.1e-10	41.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
MCM	PF00493.18	gi|385803145|ref|YP_005839545.1|	-	2.4e-07	29.8	0.0	2.1e-06	26.8	0.0	2.0	1	1	0	1	1	1	1	MCM2/3/5	family
AAA	PF00004.24	gi|385803145|ref|YP_005839545.1|	-	2.3e-05	24.6	0.0	5.3e-05	23.4	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.7	gi|385803145|ref|YP_005839545.1|	-	0.00054	19.0	0.1	0.0072	15.3	0.1	2.3	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
Sigma54_activat	PF00158.21	gi|385803145|ref|YP_005839545.1|	-	0.0011	18.4	0.0	0.0043	16.5	0.0	1.9	1	1	0	1	1	1	1	Sigma-54	interaction	domain
Mg_chelatase	PF01078.16	gi|385803145|ref|YP_005839545.1|	-	0.052	12.7	0.0	0.5	9.4	0.0	2.1	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
DUF2570	PF10828.3	gi|385803146|ref|YP_005839546.1|	-	0.098	12.2	1.3	0.8	9.3	0.0	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2570)
Reo_sigmaC	PF04582.7	gi|385803147|ref|YP_005839547.1|	-	2.1e-09	36.9	13.8	4.4e-09	35.9	9.2	1.5	1	1	1	2	2	2	2	Reovirus	sigma	C	capsid	protein
Myosin_tail_1	PF01576.14	gi|385803147|ref|YP_005839547.1|	-	6.8e-09	34.0	30.9	7.8e-08	30.5	21.4	1.9	1	1	0	1	1	1	1	Myosin	tail
CENP-F_leu_zip	PF10473.4	gi|385803147|ref|YP_005839547.1|	-	9.8e-09	35.1	30.7	1e-05	25.4	7.5	2.1	1	1	1	2	2	2	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Tropomyosin_1	PF12718.2	gi|385803147|ref|YP_005839547.1|	-	1.5e-08	34.6	31.8	6e-05	22.9	1.5	2.1	1	1	1	2	2	2	2	Tropomyosin	like
TPR_MLP1_2	PF07926.7	gi|385803147|ref|YP_005839547.1|	-	5.5e-08	32.6	30.4	2.2e-05	24.2	21.0	2.1	1	1	0	1	1	1	1	TPR/MLP1/MLP2-like	protein
TMF_DNA_bd	PF12329.3	gi|385803147|ref|YP_005839547.1|	-	6.9e-08	32.1	16.0	3.9e-05	23.3	3.7	3.4	1	1	3	4	4	4	2	TATA	element	modulatory	factor	1	DNA	binding
DivIC	PF04977.10	gi|385803147|ref|YP_005839547.1|	-	1.2e-07	31.1	26.3	0.017	14.5	1.8	4.4	1	1	4	5	5	4	3	Septum	formation	initiator
WEMBL	PF05701.6	gi|385803147|ref|YP_005839547.1|	-	2.2e-07	29.7	19.8	3.7e-07	29.0	13.7	1.3	1	0	0	1	1	1	1	Weak	chloroplast	movement	under	blue	light
Laminin_I	PF06008.9	gi|385803147|ref|YP_005839547.1|	-	2.6e-07	30.2	26.0	1.2e-06	28.0	8.8	2.1	1	1	0	2	2	2	1	Laminin	Domain	I
CCDC144C	PF14915.1	gi|385803147|ref|YP_005839547.1|	-	3.9e-07	29.2	25.9	5.3e-07	28.8	18.0	1.1	1	0	0	1	1	1	1	CCDC144C	protein	coiled-coil	region
bZIP_1	PF00170.16	gi|385803147|ref|YP_005839547.1|	-	6.2e-07	29.2	22.1	0.012	15.5	0.7	4.3	1	1	1	3	3	3	2	bZIP	transcription	factor
ADIP	PF11559.3	gi|385803147|ref|YP_005839547.1|	-	7e-07	29.2	31.2	0.00085	19.2	3.5	3.1	1	1	2	3	3	3	3	Afadin-	and	alpha	-actinin-Binding
PspA_IM30	PF04012.7	gi|385803147|ref|YP_005839547.1|	-	9.1e-07	28.4	23.9	0.0035	16.7	7.8	2.5	1	1	1	2	2	2	2	PspA/IM30	family
IncA	PF04156.9	gi|385803147|ref|YP_005839547.1|	-	1.5e-06	27.9	43.9	0.0006	19.4	4.4	3.0	1	1	2	3	3	2	2	IncA	protein
Tropomyosin	PF00261.15	gi|385803147|ref|YP_005839547.1|	-	1.8e-06	27.2	24.5	0.0003	19.9	10.0	2.4	1	1	1	2	2	2	2	Tropomyosin
DUF1664	PF07889.7	gi|385803147|ref|YP_005839547.1|	-	1.9e-06	27.7	13.0	0.00011	21.9	3.1	2.3	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF1664)
ERM	PF00769.14	gi|385803147|ref|YP_005839547.1|	-	2.2e-06	27.4	14.0	2.2e-06	27.4	9.7	2.0	1	1	1	2	2	2	1	Ezrin/radixin/moesin	family
AAA_13	PF13166.1	gi|385803147|ref|YP_005839547.1|	-	4.4e-06	25.4	16.0	5.5e-06	25.1	11.1	1.0	1	0	0	1	1	1	1	AAA	domain
TBPIP	PF07106.8	gi|385803147|ref|YP_005839547.1|	-	8.8e-06	25.3	24.1	0.00095	18.7	5.8	2.2	1	1	1	2	2	2	2	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
DUF972	PF06156.8	gi|385803147|ref|YP_005839547.1|	-	8.8e-06	26.0	25.4	0.00046	20.4	0.7	3.1	1	1	2	3	3	3	1	Protein	of	unknown	function	(DUF972)
Shugoshin_N	PF07558.6	gi|385803147|ref|YP_005839547.1|	-	1.6e-05	24.4	12.7	0.001	18.7	1.1	4.1	2	1	3	5	5	5	3	Shugoshin	N-terminal	coiled-coil	region
DUF4201	PF13870.1	gi|385803147|ref|YP_005839547.1|	-	1.8e-05	24.2	18.5	0.0068	15.8	0.6	2.6	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4201)
ATG16	PF08614.6	gi|385803147|ref|YP_005839547.1|	-	2.1e-05	24.4	32.1	0.00012	21.9	11.8	2.1	1	1	1	2	2	2	1	Autophagy	protein	16	(ATG16)
DUF2968	PF11180.3	gi|385803147|ref|YP_005839547.1|	-	3.1e-05	23.4	28.3	0.00038	19.9	5.6	2.2	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF2968)
Filament	PF00038.16	gi|385803147|ref|YP_005839547.1|	-	3.6e-05	23.4	26.6	0.003	17.0	9.8	2.5	1	1	1	2	2	2	2	Intermediate	filament	protein
FlaC_arch	PF05377.6	gi|385803147|ref|YP_005839547.1|	-	4e-05	23.4	27.6	0.022	14.6	1.9	5.4	1	1	5	6	6	6	1	Flagella	accessory	protein	C	(FlaC)
GAS	PF13851.1	gi|385803147|ref|YP_005839547.1|	-	4.5e-05	22.7	10.6	4.5e-05	22.7	7.3	2.2	1	1	1	2	2	2	2	Growth-arrest	specific	micro-tubule	binding
FliJ	PF02050.11	gi|385803147|ref|YP_005839547.1|	-	4.8e-05	23.3	23.2	0.0015	18.6	7.4	2.4	1	1	1	2	2	2	2	Flagellar	FliJ	protein
Laminin_II	PF06009.7	gi|385803147|ref|YP_005839547.1|	-	5.4e-05	22.9	22.6	0.0016	18.2	6.0	2.9	1	1	2	3	3	3	3	Laminin	Domain	II
Spc7	PF08317.6	gi|385803147|ref|YP_005839547.1|	-	7.5e-05	21.5	24.0	0.008	14.8	8.5	2.1	1	1	1	2	2	2	2	Spc7	kinetochore	protein
AAA_27	PF13514.1	gi|385803147|ref|YP_005839547.1|	-	0.00012	19.9	18.5	0.00016	19.5	12.8	1.0	1	0	0	1	1	1	1	AAA	domain
Atg14	PF10186.4	gi|385803147|ref|YP_005839547.1|	-	0.00014	20.9	21.9	0.0071	15.3	10.2	2.1	1	1	1	2	2	2	2	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Cast	PF10174.4	gi|385803147|ref|YP_005839547.1|	-	0.0002	19.6	28.2	0.0056	14.7	12.6	2.1	1	1	1	2	2	2	2	RIM-binding	protein	of	the	cytomatrix	active	zone
HALZ	PF02183.13	gi|385803147|ref|YP_005839547.1|	-	0.00023	20.8	26.9	0.11	12.2	1.0	4.9	2	2	3	5	5	4	3	Homeobox	associated	leucine	zipper
MAD	PF05557.8	gi|385803147|ref|YP_005839547.1|	-	0.00024	19.3	29.4	0.00025	19.2	5.8	2.1	1	1	1	2	2	2	1	Mitotic	checkpoint	protein
bZIP_2	PF07716.10	gi|385803147|ref|YP_005839547.1|	-	0.00026	20.7	34.3	0.017	14.8	0.4	5.6	2	1	3	5	5	4	3	Basic	region	leucine	zipper
DUF3584	PF12128.3	gi|385803147|ref|YP_005839547.1|	-	0.00028	18.3	23.3	0.00049	17.6	16.2	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
COG2	PF06148.6	gi|385803147|ref|YP_005839547.1|	-	0.00029	20.7	18.6	0.24	11.2	2.7	3.0	1	1	2	3	3	3	2	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF745	PF05335.8	gi|385803147|ref|YP_005839547.1|	-	0.0003	20.3	15.1	0.0003	20.3	10.5	1.8	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF745)
Seryl_tRNA_N	PF02403.17	gi|385803147|ref|YP_005839547.1|	-	0.0003	20.7	20.1	0.041	13.8	2.7	2.3	1	1	1	2	2	2	2	Seryl-tRNA	synthetase	N-terminal	domain
EzrA	PF06160.7	gi|385803147|ref|YP_005839547.1|	-	0.00036	18.8	20.9	0.028	12.6	6.5	2.0	1	1	1	2	2	2	2	Septation	ring	formation	regulator,	EzrA
Baculo_PEP_C	PF04513.7	gi|385803147|ref|YP_005839547.1|	-	0.00044	20.0	21.6	0.00048	19.9	9.4	2.2	1	1	1	2	2	2	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
BRE1	PF08647.6	gi|385803147|ref|YP_005839547.1|	-	0.00046	20.1	20.1	0.0009	19.1	3.4	3.1	1	1	2	3	3	3	1	BRE1	E3	ubiquitin	ligase
IFT57	PF10498.4	gi|385803147|ref|YP_005839547.1|	-	0.00047	19.0	15.6	0.00047	19.0	10.8	2.0	1	1	1	2	2	2	1	Intra-flagellar	transport	protein	57
Rootletin	PF15035.1	gi|385803147|ref|YP_005839547.1|	-	0.00052	20.0	32.5	0.072	13.0	4.3	3.5	1	1	2	3	3	3	2	Ciliary	rootlet	component,	centrosome	cohesion
APG6	PF04111.7	gi|385803147|ref|YP_005839547.1|	-	0.00052	19.1	29.1	0.0077	15.3	1.2	2.0	1	1	1	2	2	2	2	Autophagy	protein	Apg6
Vps52	PF04129.7	gi|385803147|ref|YP_005839547.1|	-	0.0007	18.2	5.1	0.0007	18.2	3.6	1.9	1	1	1	2	2	2	1	Vps52	/	Sac2	family
BLOC1_2	PF10046.4	gi|385803147|ref|YP_005839547.1|	-	0.00073	19.6	21.3	0.0077	16.3	4.8	3.4	1	1	2	3	3	3	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF812	PF05667.6	gi|385803147|ref|YP_005839547.1|	-	0.00081	18.0	21.9	0.038	12.5	10.2	2.0	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF812)
Syntaxin-6_N	PF09177.6	gi|385803147|ref|YP_005839547.1|	-	0.001	19.3	21.9	0.64	10.4	9.9	3.1	1	1	1	2	2	2	1	Syntaxin	6,	N-terminal
DUF869	PF05911.6	gi|385803147|ref|YP_005839547.1|	-	0.0012	17.1	23.3	0.0028	16.0	16.1	1.6	1	1	0	1	1	1	1	Plant	protein	of	unknown	function	(DUF869)
DivIVA	PF05103.8	gi|385803147|ref|YP_005839547.1|	-	0.0013	18.8	25.4	0.014	15.4	11.8	2.7	1	1	1	2	2	2	1	DivIVA	protein
DUF948	PF06103.6	gi|385803147|ref|YP_005839547.1|	-	0.0014	18.4	13.3	0.079	12.8	0.4	3.5	1	1	2	3	3	3	1	Bacterial	protein	of	unknown	function	(DUF948)
Macoilin	PF09726.4	gi|385803147|ref|YP_005839547.1|	-	0.0014	17.0	21.5	0.0019	16.6	14.9	1.2	1	0	0	1	1	1	1	Transmembrane	protein
CCDC155	PF14662.1	gi|385803147|ref|YP_005839547.1|	-	0.0015	18.2	34.3	0.0031	17.1	19.1	2.3	1	1	1	2	2	2	1	Coiled-coil	region	of	CCDC155
MscS_porin	PF12795.2	gi|385803147|ref|YP_005839547.1|	-	0.0015	17.9	40.2	0.0027	17.0	24.7	2.1	1	1	1	2	2	2	1	Mechanosensitive	ion	channel	porin	domain
NPV_P10	PF05531.7	gi|385803147|ref|YP_005839547.1|	-	0.0016	18.6	20.4	0.42	10.8	1.2	3.4	1	1	2	3	3	3	1	Nucleopolyhedrovirus	P10	protein
Taxilin	PF09728.4	gi|385803147|ref|YP_005839547.1|	-	0.0017	17.5	19.2	0.0027	16.8	13.3	1.3	1	0	0	1	1	1	1	Myosin-like	coiled-coil	protein
Uds1	PF15456.1	gi|385803147|ref|YP_005839547.1|	-	0.0017	18.3	14.1	0.0017	18.3	9.8	2.3	1	1	1	2	2	2	1	Up-regulated	During	Septation
HOOK	PF05622.7	gi|385803147|ref|YP_005839547.1|	-	0.0018	16.2	27.8	0.023	12.5	4.6	2.0	1	1	1	2	2	2	2	HOOK	protein
Gp58	PF07902.6	gi|385803147|ref|YP_005839547.1|	-	0.002	16.4	12.0	0.0025	16.0	8.3	1.1	1	0	0	1	1	1	1	gp58-like	protein
Cep57_CLD_2	PF14197.1	gi|385803147|ref|YP_005839547.1|	-	0.0026	17.6	4.5	0.0026	17.6	3.1	3.3	1	1	2	3	3	3	1	Centrosome	localisation	domain	of	PPC89
Prefoldin_2	PF01920.15	gi|385803147|ref|YP_005839547.1|	-	0.003	17.2	25.9	0.18	11.5	0.3	3.9	1	1	3	4	4	4	1	Prefoldin	subunit
WXG100	PF06013.7	gi|385803147|ref|YP_005839547.1|	-	0.0037	17.2	21.4	2.4	8.2	0.9	4.4	1	1	2	3	3	3	0	Proteins	of	100	residues	with	WXG
Nup54	PF13874.1	gi|385803147|ref|YP_005839547.1|	-	0.0039	16.8	20.9	0.0067	16.0	8.5	2.4	1	1	1	2	2	2	1	Nucleoporin	complex	subunit	54
DUF2205	PF10224.4	gi|385803147|ref|YP_005839547.1|	-	0.0041	16.6	3.0	0.0041	16.6	2.1	3.4	1	1	2	3	3	3	1	Predicted	coiled-coil	protein	(DUF2205)
Rab5-bind	PF09311.6	gi|385803147|ref|YP_005839547.1|	-	0.0042	16.9	35.1	0.19	11.6	17.9	2.7	1	1	1	2	2	2	1	Rabaptin-like	protein
Fib_alpha	PF08702.5	gi|385803147|ref|YP_005839547.1|	-	0.0043	17.1	17.8	0.2	11.7	12.3	2.1	1	1	0	1	1	1	1	Fibrinogen	alpha/beta	chain	family
CENP-Q	PF13094.1	gi|385803147|ref|YP_005839547.1|	-	0.0047	16.9	35.2	0.093	12.7	12.1	2.9	1	1	2	3	3	3	1	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
AIP3	PF03915.8	gi|385803147|ref|YP_005839547.1|	-	0.005	15.8	13.4	0.0064	15.4	9.3	1.1	1	0	0	1	1	1	1	Actin	interacting	protein	3
PEARLI-4	PF05278.7	gi|385803147|ref|YP_005839547.1|	-	0.0061	15.9	9.2	0.024	14.0	0.4	2.3	1	1	1	2	2	2	1	Arabidopsis	phospholipase-like	protein	(PEARLI	4)
HrpB7	PF09486.5	gi|385803147|ref|YP_005839547.1|	-	0.0073	16.2	15.6	0.013	15.4	7.2	3.0	1	1	1	2	2	2	1	Bacterial	type	III	secretion	protein	(HrpB7)
DUF904	PF06005.7	gi|385803147|ref|YP_005839547.1|	-	0.008	16.4	38.0	0.041	14.1	1.1	4.2	1	1	2	3	3	2	2	Protein	of	unknown	function	(DUF904)
COG5	PF10392.4	gi|385803147|ref|YP_005839547.1|	-	0.0081	16.1	14.8	0.27	11.1	0.8	3.0	1	1	2	3	3	3	1	Golgi	transport	complex	subunit	5
DUF2730	PF10805.3	gi|385803147|ref|YP_005839547.1|	-	0.0094	15.6	13.1	1.1	9.0	2.2	3.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2730)
MCPsignal	PF00015.16	gi|385803147|ref|YP_005839547.1|	-	0.0096	15.4	13.1	0.0093	15.5	8.2	1.5	1	1	0	1	1	1	1	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Herpes_U30	PF04523.8	gi|385803147|ref|YP_005839547.1|	-	0.0099	13.3	9.7	0.012	13.1	6.7	1.0	1	0	0	1	1	1	1	Herpes	virus	tegument	protein	U30
Mod_r	PF07200.8	gi|385803147|ref|YP_005839547.1|	-	0.01	15.7	25.5	0.12	12.3	6.6	2.6	1	1	2	3	3	3	0	Modifier	of	rudimentary	(Mod(r))	protein
TMF_TATA_bd	PF12325.3	gi|385803147|ref|YP_005839547.1|	-	0.012	15.3	29.4	0.031	13.9	0.5	3.3	1	1	2	3	3	3	0	TATA	element	modulatory	factor	1	TATA	binding
Fez1	PF06818.10	gi|385803147|ref|YP_005839547.1|	-	0.013	15.5	24.9	0.11	12.5	17.1	2.1	1	1	0	1	1	1	0	Fez1
DUF3450	PF11932.3	gi|385803147|ref|YP_005839547.1|	-	0.013	14.7	27.9	0.18	11.0	8.6	2.7	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF3450)
DUF4200	PF13863.1	gi|385803147|ref|YP_005839547.1|	-	0.013	15.4	14.0	0.013	15.4	9.7	3.0	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4200)
Sec8_exocyst	PF04048.9	gi|385803147|ref|YP_005839547.1|	-	0.015	14.9	14.6	0.027	14.0	8.5	2.3	1	1	1	2	2	1	0	Sec8	exocyst	complex	component	specific	domain
DUF4094	PF13334.1	gi|385803147|ref|YP_005839547.1|	-	0.016	15.5	14.0	0.54	10.6	1.5	2.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4094)
TMPIT	PF07851.8	gi|385803147|ref|YP_005839547.1|	-	0.016	14.2	15.4	0.2	10.6	5.4	2.0	1	1	1	2	2	2	0	TMPIT-like	protein
LXG	PF04740.7	gi|385803147|ref|YP_005839547.1|	-	0.018	14.8	16.8	0.048	13.4	8.0	2.2	1	1	1	2	2	2	0	LXG	domain	of	WXG	superfamily
DUF4363	PF14276.1	gi|385803147|ref|YP_005839547.1|	-	0.018	14.7	5.4	0.099	12.3	0.0	2.8	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4363)
Snapin_Pallidin	PF14712.1	gi|385803147|ref|YP_005839547.1|	-	0.019	15.2	18.1	1.1	9.5	0.4	3.1	1	1	2	3	3	3	0	Snapin/Pallidin
DegS	PF05384.6	gi|385803147|ref|YP_005839547.1|	-	0.019	14.1	17.3	0.71	9.0	0.4	2.7	1	1	1	2	2	2	0	Sensor	protein	DegS
Prominin	PF05478.6	gi|385803147|ref|YP_005839547.1|	-	0.021	12.4	18.2	0.33	8.4	12.5	2.0	1	1	1	2	2	2	0	Prominin
HsbA	PF12296.3	gi|385803147|ref|YP_005839547.1|	-	0.022	14.6	5.5	0.043	13.6	2.6	2.1	1	1	0	1	1	1	0	Hydrophobic	surface	binding	protein	A
Leu_zip	PF15294.1	gi|385803147|ref|YP_005839547.1|	-	0.027	13.5	25.2	0.34	9.9	10.1	2.8	1	1	0	2	2	2	0	Leucine	zipper
Exonuc_VII_L	PF02601.10	gi|385803147|ref|YP_005839547.1|	-	0.028	13.6	14.8	0.042	13.0	10.3	1.3	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
Bacillus_HBL	PF05791.6	gi|385803147|ref|YP_005839547.1|	-	0.028	13.7	16.1	0.35	10.2	1.7	2.2	1	1	1	2	2	2	0	Bacillus	haemolytic	enterotoxin	(HBL)
DUF2450	PF10475.4	gi|385803147|ref|YP_005839547.1|	-	0.034	13.0	11.5	0.061	12.2	7.9	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	N-terminal	domain	(DUF2450)
DUF724	PF05266.9	gi|385803147|ref|YP_005839547.1|	-	0.036	13.6	16.0	0.077	12.6	3.1	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF724)
RTBV_P46	PF06216.6	gi|385803147|ref|YP_005839547.1|	-	0.037	12.8	9.5	0.16	10.7	0.6	2.6	1	1	1	3	3	3	0	Rice	tungro	bacilliform	virus	P46	protein
UPF0242	PF06785.6	gi|385803147|ref|YP_005839547.1|	-	0.037	12.7	22.0	0.76	8.3	10.6	2.0	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0242)
Mnd1	PF03962.10	gi|385803147|ref|YP_005839547.1|	-	0.039	13.6	23.8	2.1	7.9	7.8	2.5	1	1	1	2	2	2	0	Mnd1	family
CENP-F_N	PF10481.4	gi|385803147|ref|YP_005839547.1|	-	0.043	13.1	22.4	0.012	14.9	7.8	2.1	1	1	1	2	2	2	0	Cenp-F	N-terminal	domain
Prefoldin	PF02996.12	gi|385803147|ref|YP_005839547.1|	-	0.043	13.4	22.0	0.17	11.5	2.4	4.0	1	1	2	4	4	4	0	Prefoldin	subunit
DUF4140	PF13600.1	gi|385803147|ref|YP_005839547.1|	-	0.046	14.1	25.8	0.36	11.3	1.8	3.8	1	1	2	3	3	3	0	N-terminal	domain	of	unknown	function	(DUF4140)
HisKA_3	PF07730.8	gi|385803147|ref|YP_005839547.1|	-	0.056	13.8	12.1	0.19	12.0	1.4	3.2	1	1	1	3	3	2	0	Histidine	kinase
Lectin_N	PF03954.9	gi|385803147|ref|YP_005839547.1|	-	0.056	12.8	16.6	0.69	9.3	6.9	2.6	1	1	1	2	2	2	0	Hepatic	lectin,	N-terminal	domain
RmuC	PF02646.11	gi|385803147|ref|YP_005839547.1|	-	0.067	12.0	17.4	0.54	9.0	4.9	2.7	1	1	1	2	2	2	0	RmuC	family
ALIX_LYPXL_bnd	PF13949.1	gi|385803147|ref|YP_005839547.1|	-	0.078	11.9	24.5	0.26	10.1	17.0	1.7	1	1	0	1	1	1	0	ALIX	V-shaped	domain	binding	to	HIV
DUF2681	PF10883.3	gi|385803147|ref|YP_005839547.1|	-	0.083	13.1	14.1	0.15	12.3	0.4	3.9	1	1	3	4	4	3	0	Protein	of	unknown	function	(DUF2681)
Spectrin	PF00435.16	gi|385803147|ref|YP_005839547.1|	-	0.089	13.0	22.1	1.7	8.9	7.1	2.9	1	1	1	2	2	2	0	Spectrin	repeat
Perilipin	PF03036.11	gi|385803147|ref|YP_005839547.1|	-	0.09	11.5	11.6	0.11	11.3	8.0	1.1	1	0	0	1	1	1	0	Perilipin	family
Spc24	PF08286.6	gi|385803147|ref|YP_005839547.1|	-	0.11	12.2	33.0	0.68	9.6	3.6	3.3	1	1	2	3	3	3	0	Spc24	subunit	of	Ndc80
DUF342	PF03961.8	gi|385803147|ref|YP_005839547.1|	-	0.12	10.7	16.9	0.19	10.1	4.6	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF342)
Lebercilin	PF15619.1	gi|385803147|ref|YP_005839547.1|	-	0.12	11.7	27.8	1.7	8.0	16.0	2.3	1	1	1	2	2	2	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
DUF2353	PF09789.4	gi|385803147|ref|YP_005839547.1|	-	0.13	11.5	23.5	0.23	10.6	13.0	2.0	1	1	1	2	2	2	0	Uncharacterized	coiled-coil	protein	(DUF2353)
DUF3407	PF11887.3	gi|385803147|ref|YP_005839547.1|	-	0.13	11.5	6.2	0.16	11.2	4.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3407)
Ax_dynein_light	PF10211.4	gi|385803147|ref|YP_005839547.1|	-	0.13	12.1	24.0	1.2	8.9	1.0	3.2	1	1	2	3	3	3	0	Axonemal	dynein	light	chain
Tetraspannin	PF00335.15	gi|385803147|ref|YP_005839547.1|	-	0.13	11.4	0.3	0.28	10.4	0.2	1.6	1	1	0	1	1	1	0	Tetraspanin	family
Microtub_assoc	PF07989.6	gi|385803147|ref|YP_005839547.1|	-	0.14	12.0	15.4	0.18	11.6	1.4	3.7	1	1	1	3	3	3	0	Microtubule	associated
Borrelia_P83	PF05262.6	gi|385803147|ref|YP_005839547.1|	-	0.15	10.2	15.7	0.18	10.0	10.9	1.0	1	0	0	1	1	1	0	Borrelia	P83/100	protein
CALCOCO1	PF07888.6	gi|385803147|ref|YP_005839547.1|	-	0.16	10.2	24.3	3.4	5.8	16.8	2.0	1	1	0	1	1	1	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
THOC7	PF05615.8	gi|385803147|ref|YP_005839547.1|	-	0.16	12.2	22.2	0.36	11.1	2.8	3.0	1	1	2	3	3	3	0	Tho	complex	subunit	7
KLRAQ	PF10205.4	gi|385803147|ref|YP_005839547.1|	-	0.16	11.9	25.7	0.47	10.5	3.6	2.4	1	1	1	2	2	2	0	Predicted	coiled-coil	domain-containing	protein
DUF4618	PF15397.1	gi|385803147|ref|YP_005839547.1|	-	0.17	11.1	22.4	0.52	9.6	3.3	3.0	1	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4618)
Fmp27_WPPW	PF10359.4	gi|385803147|ref|YP_005839547.1|	-	0.17	10.2	21.6	0.061	11.7	3.4	2.0	1	1	1	2	2	2	0	RNA	pol	II	promoter	Fmp27	protein	domain
zf-ZPR1	PF03367.8	gi|385803147|ref|YP_005839547.1|	-	0.18	10.9	13.6	1.2	8.2	5.8	2.8	1	1	2	3	3	3	0	ZPR1	zinc-finger	domain
DUF641	PF04859.7	gi|385803147|ref|YP_005839547.1|	-	0.18	11.5	16.3	0.81	9.4	4.6	2.8	1	1	1	2	2	2	0	Plant	protein	of	unknown	function	(DUF641)
GrpE	PF01025.14	gi|385803147|ref|YP_005839547.1|	-	0.21	11.1	26.1	0.37	10.3	0.7	3.1	1	1	2	3	3	3	0	GrpE
GLE1	PF07817.8	gi|385803147|ref|YP_005839547.1|	-	0.22	10.4	8.7	1.4	7.7	0.1	2.2	1	1	1	2	2	2	0	GLE1-like	protein
V_ATPase_I	PF01496.14	gi|385803147|ref|YP_005839547.1|	-	0.23	9.2	20.8	6.5	4.4	14.4	2.0	1	1	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
FH2	PF02181.18	gi|385803147|ref|YP_005839547.1|	-	0.23	10.2	13.6	2.3	6.9	4.6	2.2	1	1	1	2	2	2	0	Formin	Homology	2	Domain
Med4	PF10018.4	gi|385803147|ref|YP_005839547.1|	-	0.24	10.7	20.9	0.14	11.4	1.1	3.0	1	1	2	3	3	3	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
DUF4446	PF14584.1	gi|385803147|ref|YP_005839547.1|	-	0.25	11.1	14.0	0.59	9.9	0.3	3.2	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF4446)
DUF848	PF05852.6	gi|385803147|ref|YP_005839547.1|	-	0.25	11.1	23.5	0.46	10.3	8.0	2.2	1	1	1	2	2	2	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
Sec2p	PF06428.6	gi|385803147|ref|YP_005839547.1|	-	0.26	11.1	26.8	1	9.2	6.5	3.5	1	1	2	3	3	3	0	GDP/GTP	exchange	factor	Sec2p
DUF1049	PF06305.6	gi|385803147|ref|YP_005839547.1|	-	0.27	10.7	0.0	0.27	10.7	0.0	4.4	2	2	2	5	5	4	0	Protein	of	unknown	function	(DUF1049)
Halogen_Hydrol	PF10112.4	gi|385803147|ref|YP_005839547.1|	-	0.33	10.3	4.8	0.63	9.4	0.1	2.2	1	1	1	2	2	2	0	5-bromo-4-chloroindolyl	phosphate	hydrolysis	protein
Cluap1	PF10234.4	gi|385803147|ref|YP_005839547.1|	-	0.37	9.9	21.0	0.48	9.5	3.4	2.2	1	1	1	2	2	2	0	Clusterin-associated	protein-1
Hemerythrin	PF01814.18	gi|385803147|ref|YP_005839547.1|	-	0.38	10.9	6.2	63	3.7	4.3	3.0	1	1	0	1	1	1	0	Hemerythrin	HHE	cation	binding	domain
LMBR1	PF04791.11	gi|385803147|ref|YP_005839547.1|	-	0.39	9.2	10.5	0.51	8.8	7.3	1.3	1	1	0	1	1	1	0	LMBR1-like	membrane	protein
Herpes_UL6	PF01763.11	gi|385803147|ref|YP_005839547.1|	-	0.45	8.6	18.6	0.2	9.7	5.8	2.1	1	1	1	2	2	2	0	Herpesvirus	UL6	like
LPP	PF04728.8	gi|385803147|ref|YP_005839547.1|	-	0.47	10.2	16.1	0.49	10.2	0.8	4.2	1	1	2	3	3	3	0	Lipoprotein	leucine-zipper
Surfac_D-trimer	PF09006.6	gi|385803147|ref|YP_005839547.1|	-	0.47	10.2	3.6	6.7	6.5	0.0	3.7	3	2	2	5	5	2	0	Lung	surfactant	protein	D	coiled-coil	trimerisation
Phlebovirus_NSM	PF07246.6	gi|385803147|ref|YP_005839547.1|	-	0.53	9.3	15.2	2.2	7.3	5.4	2.1	1	1	1	2	2	2	0	Phlebovirus	nonstructural	protein	NS-M
Kinetocho_Slk19	PF12709.2	gi|385803147|ref|YP_005839547.1|	-	0.54	10.3	24.1	0.81	9.7	2.6	4.6	1	1	2	3	3	1	0	Central	kinetochore-associated
DUF1640	PF07798.6	gi|385803147|ref|YP_005839547.1|	-	0.56	10.2	20.2	11	5.9	9.4	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1640)
Sipho_Gp157	PF05565.6	gi|385803147|ref|YP_005839547.1|	-	0.58	9.7	11.3	0.3	10.6	0.3	2.4	1	1	1	2	2	2	0	Siphovirus	Gp157
DUF2935	PF11155.3	gi|385803147|ref|YP_005839547.1|	-	0.59	10.2	8.6	2.9	7.9	0.1	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF2935)
BicD	PF09730.4	gi|385803147|ref|YP_005839547.1|	-	0.59	8.4	25.2	2	6.6	14.0	2.0	1	1	1	2	2	2	0	Microtubule-associated	protein	Bicaudal-D
YqgF	PF14639.1	gi|385803147|ref|YP_005839547.1|	-	0.62	9.6	3.6	1.4	8.4	2.0	1.8	1	1	1	2	2	2	0	Holliday-junction	resolvase-like	of	SPT6
Flagellin_C	PF00700.16	gi|385803147|ref|YP_005839547.1|	-	0.63	10.2	21.4	1.6	8.9	2.1	4.1	1	1	3	4	4	4	0	Bacterial	flagellin	C-terminal	helical	region
OmpH	PF03938.9	gi|385803147|ref|YP_005839547.1|	-	0.65	9.9	27.9	12	5.7	19.4	2.3	1	1	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
RasGAP_C	PF03836.10	gi|385803147|ref|YP_005839547.1|	-	0.65	9.6	14.4	1.5	8.4	2.5	2.8	1	1	2	3	3	3	0	RasGAP	C-terminus
TSC22	PF01166.13	gi|385803147|ref|YP_005839547.1|	-	0.66	9.9	23.3	0.13	12.2	1.6	4.7	1	1	4	5	5	4	0	TSC-22/dip/bun	family
DUF1515	PF07439.6	gi|385803147|ref|YP_005839547.1|	-	0.69	9.7	11.3	1.6	8.5	1.1	3.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1515)
Striatin	PF08232.7	gi|385803147|ref|YP_005839547.1|	-	0.7	10.2	22.6	0.14	12.4	3.2	2.6	1	1	1	2	2	2	0	Striatin	family
UPF0449	PF15136.1	gi|385803147|ref|YP_005839547.1|	-	0.7	10.1	23.1	0.75	10.0	0.4	4.5	1	1	3	4	4	4	0	Uncharacterised	protein	family	UPF0449
SpecificRecomb	PF10136.4	gi|385803147|ref|YP_005839547.1|	-	0.76	7.7	4.4	0.9	7.4	3.1	1.1	1	0	0	1	1	1	0	Site-specific	recombinase
DASH_Dam1	PF08653.5	gi|385803147|ref|YP_005839547.1|	-	0.79	9.5	15.3	2.3	8.0	0.4	4.5	1	1	2	4	4	4	0	DASH	complex	subunit	Dam1
DUF2203	PF09969.4	gi|385803147|ref|YP_005839547.1|	-	0.89	9.7	11.8	9.5	6.4	5.6	2.6	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
HAP1_N	PF04849.8	gi|385803147|ref|YP_005839547.1|	-	0.89	8.4	30.2	0.39	9.6	16.1	2.0	1	1	1	2	2	2	0	HAP1	N-terminal	conserved	region
Jnk-SapK_ap_N	PF09744.4	gi|385803147|ref|YP_005839547.1|	-	0.9	9.5	21.9	2.3	8.1	7.5	2.3	1	1	1	2	2	2	0	JNK_SAPK-associated	protein-1
Syntaxin	PF00804.20	gi|385803147|ref|YP_005839547.1|	-	0.98	9.6	22.7	0.55	10.4	0.3	3.0	1	1	1	2	2	2	0	Syntaxin
DUF3393	PF11873.3	gi|385803147|ref|YP_005839547.1|	-	1	8.8	7.7	2.6	7.4	0.6	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3393)
Golgin_A5	PF09787.4	gi|385803147|ref|YP_005839547.1|	-	1.1	7.6	24.7	0.92	7.9	8.9	2.1	1	1	1	2	2	2	0	Golgin	subfamily	A	member	5
YlqD	PF11068.3	gi|385803147|ref|YP_005839547.1|	-	1.2	9.1	25.3	7	6.7	4.9	3.1	1	1	2	3	3	3	0	YlqD	protein
DUF4337	PF14235.1	gi|385803147|ref|YP_005839547.1|	-	1.3	8.8	14.3	2.5e+02	1.4	9.9	2.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4337)
DUF1843	PF08898.5	gi|385803147|ref|YP_005839547.1|	-	1.3	9.0	17.1	0.96	9.5	0.1	4.3	1	1	4	5	5	5	0	Domain	of	unknown	function	(DUF1843)
EAP30	PF04157.11	gi|385803147|ref|YP_005839547.1|	-	1.4	8.0	27.4	3.6	6.6	6.1	3.1	1	1	2	3	3	3	0	EAP30/Vps36	family
Fzo_mitofusin	PF04799.8	gi|385803147|ref|YP_005839547.1|	-	1.4	8.2	21.1	3	7.2	5.4	3.0	1	1	2	3	3	3	0	fzo-like	conserved	region
Neur_chan_memb	PF02932.11	gi|385803147|ref|YP_005839547.1|	-	1.8	8.3	4.3	2.2	8.1	3.0	1.2	1	0	0	1	1	1	0	Neurotransmitter-gated	ion-channel	transmembrane	region
Kinesin-relat_1	PF12711.2	gi|385803147|ref|YP_005839547.1|	-	1.9	8.9	21.7	0.1	13.0	4.2	3.5	1	1	2	3	3	1	0	Kinesin	motor
Med9	PF07544.8	gi|385803147|ref|YP_005839547.1|	-	2	8.1	16.1	7.3	6.3	2.5	3.3	1	1	2	3	3	3	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
HlyD	PF00529.15	gi|385803147|ref|YP_005839547.1|	-	2.1	7.5	30.4	2.5	7.3	16.3	2.0	1	1	1	2	2	2	0	HlyD	family	secretion	protein
zf-C4H2	PF10146.4	gi|385803147|ref|YP_005839547.1|	-	2.2	8.2	13.8	1.7	8.6	7.2	1.8	1	1	1	2	2	2	0	Zinc	finger-containing	protein
DUF1875	PF08961.5	gi|385803147|ref|YP_005839547.1|	-	2.5	7.3	12.3	0.3	10.3	0.4	3.0	1	1	1	3	3	3	0	Domain	of	unknown	function	(DUF1875)
KxDL	PF10241.4	gi|385803147|ref|YP_005839547.1|	-	2.6	8.0	16.1	1.1	9.1	0.3	3.6	1	1	2	4	4	4	0	Uncharacterized	conserved	protein
Peptidase_S64	PF08192.6	gi|385803147|ref|YP_005839547.1|	-	2.6	6.2	10.6	3.1	6.0	7.3	1.0	1	0	0	1	1	1	0	Peptidase	family	S64
Bap31	PF05529.7	gi|385803147|ref|YP_005839547.1|	-	2.9	7.2	19.1	13	5.2	4.5	2.8	1	1	1	2	2	2	0	B-cell	receptor-associated	protein	31-like
ATP-synt_B	PF00430.13	gi|385803147|ref|YP_005839547.1|	-	3.4	7.4	20.9	7	6.4	13.2	2.3	1	1	2	3	3	2	0	ATP	synthase	B/B'	CF(0)
CorA	PF01544.13	gi|385803147|ref|YP_005839547.1|	-	3.4	6.6	21.7	1.5	7.7	10.2	2.1	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
COX16	PF14138.1	gi|385803147|ref|YP_005839547.1|	-	3.4	7.8	9.4	6.3	7.0	0.2	2.8	1	1	2	3	3	2	0	Cytochrome	c	oxidase	assembly	protein	COX16
DUF3847	PF12958.2	gi|385803147|ref|YP_005839547.1|	-	3.5	7.4	20.7	7.8	6.3	0.2	3.4	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3847)
DUF3186	PF11382.3	gi|385803147|ref|YP_005839547.1|	-	3.5	6.6	26.8	0.34	10.0	2.1	4.0	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF3186)
DUF4398	PF14346.1	gi|385803147|ref|YP_005839547.1|	-	3.6	7.6	15.8	35	4.5	10.9	2.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4398)
CCDC-167	PF15188.1	gi|385803147|ref|YP_005839547.1|	-	3.6	7.5	20.2	0.65	9.9	1.7	3.3	1	1	2	3	3	3	0	Coiled-coil	domain-containing	protein	167
AATF-Che1	PF13339.1	gi|385803147|ref|YP_005839547.1|	-	3.9	7.6	18.4	6.3	6.9	1.7	2.2	1	1	1	2	2	2	0	Apoptosis	antagonizing	transcription	factor
Pox_A_type_inc	PF04508.7	gi|385803147|ref|YP_005839547.1|	-	3.9	7.4	15.1	2.6	8.0	0.5	5.0	3	2	2	5	5	4	0	Viral	A-type	inclusion	protein	repeat
TATR	PF03430.8	gi|385803147|ref|YP_005839547.1|	-	4.2	5.8	8.5	4.8	5.7	5.9	1.0	1	0	0	1	1	1	0	Trans-activating	transcriptional	regulator
CENP-H	PF05837.7	gi|385803147|ref|YP_005839547.1|	-	4.4	7.5	23.4	0.26	11.4	2.0	3.1	1	1	2	3	3	3	0	Centromere	protein	H	(CENP-H)
DMPK_coil	PF08826.5	gi|385803147|ref|YP_005839547.1|	-	4.5	7.2	31.6	2.6	8.0	5.3	5.0	2	1	3	5	5	5	0	DMPK	coiled	coil	domain	like
DUF4559	PF15112.1	gi|385803147|ref|YP_005839547.1|	-	4.5	6.3	17.9	18	4.3	12.3	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4559)
TMCO5	PF14992.1	gi|385803147|ref|YP_005839547.1|	-	4.6	6.3	27.0	0.18	10.8	3.4	2.0	1	1	1	2	2	2	0	TMCO5	family
PEP-utilisers_N	PF05524.8	gi|385803147|ref|YP_005839547.1|	-	4.7	7.0	14.6	8.1	6.2	3.4	3.0	1	1	1	2	2	2	0	PEP-utilising	enzyme,	N-terminal
YPEB	PF14620.1	gi|385803147|ref|YP_005839547.1|	-	5	6.0	18.0	3.6	6.5	4.6	2.0	1	1	1	2	2	2	0	YpeB	sporulation
CENP-K	PF11802.3	gi|385803147|ref|YP_005839547.1|	-	5.1	6.2	14.1	1.8	7.7	6.8	1.9	1	1	1	2	2	2	0	Centromere-associated	protein	K
ATP-synt_DE	PF00401.15	gi|385803147|ref|YP_005839547.1|	-	5.8	6.8	11.5	1.3e+02	2.5	0.5	2.9	1	1	1	2	2	2	0	ATP	synthase,	Delta/Epsilon	chain,	long	alpha-helix	domain
DASH_Duo1	PF08651.5	gi|385803147|ref|YP_005839547.1|	-	5.9	6.5	17.7	0.2	11.2	1.1	3.7	3	1	1	4	4	3	0	DASH	complex	subunit	Duo1
HAUS-augmin3	PF14932.1	gi|385803147|ref|YP_005839547.1|	-	6.7	5.8	25.8	4.3	6.4	15.4	1.9	1	1	1	2	2	2	0	HAUS	augmin-like	complex	subunit	3
FliD_N	PF02465.13	gi|385803147|ref|YP_005839547.1|	-	7.2	7.0	16.4	1e+02	3.3	4.6	2.9	1	1	1	2	2	2	0	Flagellar	hook-associated	protein	2	N-terminus
YscO	PF07321.7	gi|385803147|ref|YP_005839547.1|	-	7.4	6.3	28.5	26	4.6	9.8	3.0	1	1	1	2	2	2	0	Type	III	secretion	protein	YscO
Erp_C	PF06780.6	gi|385803147|ref|YP_005839547.1|	-	7.8	6.3	16.3	1.3	8.8	0.9	2.6	1	1	0	2	2	2	0	Erp	protein	C-terminus
bZIP_Maf	PF03131.12	gi|385803147|ref|YP_005839547.1|	-	7.9	6.8	28.9	3.1	8.1	0.4	4.1	1	1	3	4	4	4	0	bZIP	Maf	transcription	factor
End3	PF12761.2	gi|385803147|ref|YP_005839547.1|	-	8.4	5.9	25.4	0.75	9.4	3.0	2.8	1	1	1	2	2	2	0	Actin	cytoskeleton-regulatory	complex	protein	END3
DHHW	PF14286.1	gi|385803147|ref|YP_005839547.1|	-	8.4	5.5	7.3	10	5.3	5.1	1.2	1	0	0	1	1	1	0	DHHW	protein
FtsL	PF04999.8	gi|385803147|ref|YP_005839547.1|	-	8.6	6.1	16.8	60	3.4	0.2	4.3	1	1	2	3	3	2	0	Cell	division	protein	FtsL
VWA_2	PF13519.1	gi|385803148|ref|YP_005839548.1|	-	2.7e-31	108.9	6.3	5.1e-27	95.0	0.3	3.4	3	0	0	3	3	3	2	von	Willebrand	factor	type	A	domain
VWA	PF00092.23	gi|385803148|ref|YP_005839548.1|	-	6.7e-18	65.0	0.6	2.7e-16	59.8	0.0	2.3	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.1	gi|385803148|ref|YP_005839548.1|	-	5.3e-16	58.6	0.4	9.4e-15	54.6	0.1	2.5	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.9	gi|385803148|ref|YP_005839548.1|	-	9.2e-10	38.0	0.1	3.5e-08	32.8	0.0	2.4	2	0	0	2	2	2	1	VWA	domain	containing	CoxE-like	protein
DUF1355	PF07090.6	gi|385803148|ref|YP_005839548.1|	-	4.5e-06	26.1	0.1	9.8e-06	25.0	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1355)
BatA	PF07584.6	gi|385803148|ref|YP_005839548.1|	-	8.2	6.7	6.4	5.9	7.1	0.7	2.7	2	1	1	3	3	3	0	Aerotolerance	regulator	N-terminal
BatA	PF07584.6	gi|385803149|ref|YP_005839549.1|	-	3.2e-16	59.2	3.3	5.6e-16	58.5	2.3	1.4	1	0	0	1	1	1	1	Aerotolerance	regulator	N-terminal
VWA_2	PF13519.1	gi|385803149|ref|YP_005839549.1|	-	3.6e-05	23.9	3.9	7.5e-05	22.8	2.7	1.5	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
HAD_2	PF13419.1	gi|385803150|ref|YP_005839550.1|	-	5e-24	85.4	0.2	5.9e-24	85.2	0.1	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|385803150|ref|YP_005839550.1|	-	0.00041	20.8	0.0	0.001	19.5	0.0	1.7	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|385803150|ref|YP_005839550.1|	-	0.0014	18.8	0.0	0.0016	18.6	0.0	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.1	gi|385803150|ref|YP_005839550.1|	-	0.063	13.1	0.0	0.35	10.7	0.0	2.1	2	1	1	3	3	3	0	Haloacid	dehalogenase-like	hydrolase
MTHFR	PF02219.12	gi|385803151|ref|YP_005839551.1|	-	1.9e-14	53.4	0.0	3.8e-14	52.4	0.0	1.5	1	1	0	1	1	1	1	Methylenetetrahydrofolate	reductase
G_glu_transpept	PF01019.16	gi|385803151|ref|YP_005839551.1|	-	0.05	12.0	0.0	0.071	11.5	0.0	1.1	1	0	0	1	1	1	0	Gamma-glutamyltranspeptidase
AstE_AspA	PF04952.9	gi|385803153|ref|YP_005839553.1|	-	4.1e-37	127.6	0.0	5.4e-37	127.2	0.0	1.2	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
Peptidase_M14	PF00246.19	gi|385803153|ref|YP_005839553.1|	-	1.7e-05	24.5	0.5	4.2e-05	23.3	0.3	1.6	1	1	0	1	1	1	1	Zinc	carboxypeptidase
Creatininase	PF02633.9	gi|385803154|ref|YP_005839554.1|	-	3.3e-70	235.8	2.1	3.8e-70	235.6	1.5	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
Glyco_trans_4_4	PF13579.1	gi|385803154|ref|YP_005839554.1|	-	0.013	15.6	0.4	0.018	15.1	0.3	1.2	1	0	0	1	1	1	0	Glycosyl	transferase	4-like	domain
DAO	PF01266.19	gi|385803155|ref|YP_005839555.1|	-	1.6e-65	221.3	0.2	2.9e-65	220.5	0.1	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
GCV_T	PF01571.16	gi|385803155|ref|YP_005839555.1|	-	2.2e-62	210.1	0.0	4.3e-62	209.2	0.0	1.5	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
GCV_T_C	PF08669.6	gi|385803155|ref|YP_005839555.1|	-	5.8e-13	48.6	0.0	1.6e-12	47.2	0.0	1.8	2	0	0	2	2	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
SoxG	PF04268.7	gi|385803155|ref|YP_005839555.1|	-	1.6e-07	31.2	0.0	7.7e-07	29.0	0.0	2.0	1	1	1	2	2	2	1	Sarcosine	oxidase,	gamma	subunit	family
Pyr_redox_3	PF13738.1	gi|385803155|ref|YP_005839555.1|	-	1.1e-06	28.9	0.5	7.4e-05	22.9	0.3	2.7	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|385803155|ref|YP_005839555.1|	-	1.4e-05	24.1	0.1	3.1e-05	23.0	0.1	1.6	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|385803155|ref|YP_005839555.1|	-	2.3e-05	24.3	0.0	9e-05	22.4	0.0	2.1	2	0	0	2	2	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.22	gi|385803155|ref|YP_005839555.1|	-	0.00031	21.0	0.3	0.0029	17.9	0.1	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|385803155|ref|YP_005839555.1|	-	0.0033	17.2	0.4	0.22	11.2	0.0	2.9	2	0	0	2	2	2	1	FAD-NAD(P)-binding
Pyr_redox_2	PF07992.9	gi|385803155|ref|YP_005839555.1|	-	0.0049	16.7	0.1	0.078	12.8	0.0	2.4	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
ThiF	PF00899.16	gi|385803155|ref|YP_005839555.1|	-	0.0088	15.8	0.2	0.022	14.6	0.1	1.6	1	0	0	1	1	1	1	ThiF	family
ApbA	PF02558.11	gi|385803155|ref|YP_005839555.1|	-	0.015	14.7	0.1	0.03	13.7	0.1	1.5	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
TrkA_N	PF02254.13	gi|385803155|ref|YP_005839555.1|	-	0.026	14.5	0.1	0.069	13.1	0.1	1.7	1	0	0	1	1	1	0	TrkA-N	domain
HI0933_like	PF03486.9	gi|385803155|ref|YP_005839555.1|	-	0.029	12.8	0.5	0.13	10.7	0.0	1.9	2	0	0	2	2	2	0	HI0933-like	protein
GMC_oxred_N	PF00732.14	gi|385803155|ref|YP_005839555.1|	-	0.086	11.9	0.0	0.18	10.9	0.0	1.5	1	0	0	1	1	1	0	GMC	oxidoreductase
DUF22	PF01629.11	gi|385803155|ref|YP_005839555.1|	-	0.09	12.2	0.3	0.17	11.4	0.2	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF22
Lycopene_cycl	PF05834.7	gi|385803155|ref|YP_005839555.1|	-	0.1	11.4	0.4	0.27	10.1	0.0	1.8	2	0	0	2	2	2	0	Lycopene	cyclase	protein
GCV_T	PF01571.16	gi|385803156|ref|YP_005839556.1|	-	2.8e-60	203.3	0.0	6.4e-60	202.1	0.0	1.7	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
DAO	PF01266.19	gi|385803156|ref|YP_005839556.1|	-	1.6e-56	191.7	0.4	2.5e-56	191.1	0.3	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
GCV_T_C	PF08669.6	gi|385803156|ref|YP_005839556.1|	-	3.1e-15	55.9	0.0	1.1e-14	54.1	0.0	2.0	2	0	0	2	2	2	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
Pyr_redox_3	PF13738.1	gi|385803156|ref|YP_005839556.1|	-	2.5e-07	30.9	0.1	3.1e-06	27.4	0.1	2.4	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|385803156|ref|YP_005839556.1|	-	9.8e-07	27.9	0.6	1.6e-05	23.9	0.4	2.4	1	1	0	1	1	1	1	FAD	binding	domain
SoxG	PF04268.7	gi|385803156|ref|YP_005839556.1|	-	1.7e-06	27.9	0.0	4.4e-05	23.3	0.0	2.4	2	0	0	2	2	2	1	Sarcosine	oxidase,	gamma	subunit	family
NAD_binding_8	PF13450.1	gi|385803156|ref|YP_005839556.1|	-	6.6e-06	26.0	0.0	2.3e-05	24.2	0.0	2.0	2	0	0	2	2	1	1	NAD(P)-binding	Rossmann-like	domain
ThiF	PF00899.16	gi|385803156|ref|YP_005839556.1|	-	4.4e-05	23.3	0.3	8.5e-05	22.3	0.0	1.6	2	0	0	2	2	1	1	ThiF	family
Pyr_redox_2	PF07992.9	gi|385803156|ref|YP_005839556.1|	-	4.4e-05	23.4	0.1	0.0013	18.6	0.1	2.3	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.11	gi|385803156|ref|YP_005839556.1|	-	0.00012	21.5	0.0	0.00024	20.5	0.0	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
NAD_binding_9	PF13454.1	gi|385803156|ref|YP_005839556.1|	-	0.00013	21.7	0.3	0.15	11.8	0.0	2.8	2	0	0	2	2	2	2	FAD-NAD(P)-binding
Pyr_redox	PF00070.22	gi|385803156|ref|YP_005839556.1|	-	0.00015	22.1	0.6	0.00045	20.5	0.1	2.0	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Shikimate_DH	PF01488.15	gi|385803156|ref|YP_005839556.1|	-	0.00036	20.6	0.0	0.0012	19.0	0.0	1.7	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
HI0933_like	PF03486.9	gi|385803156|ref|YP_005839556.1|	-	0.0037	15.8	0.1	1	7.7	0.0	2.3	2	0	0	2	2	2	2	HI0933-like	protein
GMC_oxred_N	PF00732.14	gi|385803156|ref|YP_005839556.1|	-	0.012	14.8	0.0	0.023	13.8	0.0	1.4	1	0	0	1	1	1	0	GMC	oxidoreductase
TrkA_N	PF02254.13	gi|385803156|ref|YP_005839556.1|	-	0.028	14.4	0.1	0.056	13.4	0.1	1.5	1	0	0	1	1	1	0	TrkA-N	domain
Lycopene_cycl	PF05834.7	gi|385803156|ref|YP_005839556.1|	-	0.074	11.9	0.2	0.12	11.2	0.2	1.2	1	0	0	1	1	1	0	Lycopene	cyclase	protein
NAD_binding_7	PF13241.1	gi|385803156|ref|YP_005839556.1|	-	0.15	12.3	0.0	0.32	11.2	0.0	1.5	1	0	0	1	1	1	0	Putative	NAD(P)-binding
PALP	PF00291.20	gi|385803157|ref|YP_005839557.1|	-	3.7e-77	259.5	6.5	4.7e-77	259.2	4.5	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ACT	PF01842.20	gi|385803157|ref|YP_005839557.1|	-	1e-07	31.2	0.6	4e-07	29.3	0.4	2.0	1	0	0	1	1	1	1	ACT	domain
ACT_4	PF13291.1	gi|385803157|ref|YP_005839557.1|	-	1e-06	28.9	2.1	3.6e-06	27.2	0.1	2.6	3	0	0	3	3	3	1	ACT	domain
Usp	PF00582.21	gi|385803158|ref|YP_005839558.1|	-	3.1e-26	92.2	0.6	3.5e-26	92.0	0.4	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Form_Nir_trans	PF01226.12	gi|385803159|ref|YP_005839559.1|	-	0.013	14.3	1.5	0.013	14.3	1.0	1.0	1	0	0	1	1	1	0	Formate/nitrite	transporter
DUF1097	PF06496.6	gi|385803159|ref|YP_005839559.1|	-	0.044	13.5	4.1	0.047	13.5	2.8	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1097)
DUF2721	PF11026.3	gi|385803159|ref|YP_005839559.1|	-	0.15	11.6	7.1	0.33	10.6	4.9	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2721)
DUF4418	PF14387.1	gi|385803159|ref|YP_005839559.1|	-	1.5	8.5	4.6	1.7	8.3	3.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4418)
IncA	PF04156.9	gi|385803159|ref|YP_005839559.1|	-	1.9	8.0	5.9	1.8	8.0	4.1	1.1	1	0	0	1	1	1	0	IncA	protein
DUF4064	PF13273.1	gi|385803159|ref|YP_005839559.1|	-	2.6	8.1	9.1	3.1	7.9	6.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4064)
BCCT	PF02028.12	gi|385803160|ref|YP_005839560.1|	-	1.8e-180	600.3	50.8	2.1e-180	600.1	35.2	1.0	1	0	0	1	1	1	1	BCCT	family	transporter
Tnp_DNA_bind	PF14706.1	gi|385803161|ref|YP_005839561.1|	-	2.6e-26	91.0	0.0	4.6e-26	90.2	0.0	1.4	1	0	0	1	1	1	1	Transposase	DNA-binding
DDE_Tnp_1	PF01609.16	gi|385803161|ref|YP_005839561.1|	-	2.9e-05	23.7	0.2	5.7e-05	22.7	0.2	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
Dimer_Tnp_Tn5	PF02281.11	gi|385803161|ref|YP_005839561.1|	-	0.064	13.3	0.1	0.16	12.0	0.0	1.7	2	0	0	2	2	2	0	Transposase	Tn5	dimerisation	domain
DUF2155	PF09923.4	gi|385803161|ref|YP_005839561.1|	-	0.13	12.3	0.0	0.24	11.4	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2155)
Pterin_bind	PF00809.17	gi|385803163|ref|YP_005839563.1|	-	7.3e-71	237.8	0.1	2.1e-70	236.3	0.1	1.9	1	0	0	1	1	1	1	Pterin	binding	enzyme
Mur_ligase_M	PF08245.7	gi|385803163|ref|YP_005839563.1|	-	2.1e-13	50.7	0.1	4.9e-13	49.5	0.1	1.7	1	0	0	1	1	1	1	Mur	ligase	middle	domain
Mur_ligase_C	PF02875.16	gi|385803163|ref|YP_005839563.1|	-	1.3e-06	28.3	0.0	9.6e-06	25.5	0.0	2.5	2	0	0	2	2	2	1	Mur	ligase	family,	glutamate	ligase	domain
FTHFS	PF01268.14	gi|385803164|ref|YP_005839564.1|	-	1.5e-243	808.9	0.0	1.6e-243	808.7	0.0	1.0	1	0	0	1	1	1	1	Formate--tetrahydrofolate	ligase
Ribonuc_L-PSP	PF01042.16	gi|385803165|ref|YP_005839565.1|	-	1.2e-36	125.1	0.1	1.4e-36	124.9	0.1	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
YjgF_endoribonc	PF14588.1	gi|385803165|ref|YP_005839565.1|	-	0.0042	17.0	0.0	0.0057	16.5	0.0	1.3	1	0	0	1	1	1	1	YjgF/chorismate_mutase-like,	putative	endoribonuclease
Gas_vesicle	PF00741.13	gi|385803166|ref|YP_005839566.1|	-	1.8e-13	50.1	5.7	2.1e-13	49.9	4.0	1.1	1	0	0	1	1	1	1	Gas	vesicle	protein
DUF70	PF01901.11	gi|385803166|ref|YP_005839566.1|	-	0.045	12.7	0.0	0.045	12.7	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF70
GvpL_GvpF	PF06386.6	gi|385803167|ref|YP_005839567.1|	-	2.8e-87	292.4	0.0	4e-87	291.9	0.0	1.2	1	0	0	1	1	1	1	Gas	vesicle	synthesis	protein	GvpL/GvpF
GvpK	PF05121.7	gi|385803168|ref|YP_005839568.1|	-	2.9e-28	97.5	6.2	4e-28	97.0	4.3	1.1	1	0	0	1	1	1	1	Gas	vesicle	protein	K
DUF948	PF06103.6	gi|385803168|ref|YP_005839568.1|	-	0.0019	18.0	0.2	0.0032	17.2	0.2	1.4	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF948)
DUF3829	PF12889.2	gi|385803168|ref|YP_005839568.1|	-	0.0057	15.8	0.7	0.0063	15.7	0.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3829)
DUF327	PF03885.8	gi|385803168|ref|YP_005839568.1|	-	0.0059	16.4	0.5	0.0073	16.1	0.4	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF327)
End3	PF12761.2	gi|385803168|ref|YP_005839568.1|	-	0.013	15.1	1.3	0.017	14.8	0.9	1.1	1	0	0	1	1	1	0	Actin	cytoskeleton-regulatory	complex	protein	END3
DUF3573	PF12097.3	gi|385803168|ref|YP_005839568.1|	-	0.014	14.0	0.4	0.016	13.8	0.3	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3573)
Jnk-SapK_ap_N	PF09744.4	gi|385803168|ref|YP_005839568.1|	-	0.018	15.0	2.2	0.02	14.8	1.5	1.1	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
Syntaxin	PF00804.20	gi|385803168|ref|YP_005839568.1|	-	0.036	14.2	1.0	0.052	13.7	0.7	1.4	1	0	0	1	1	1	0	Syntaxin
CorA	PF01544.13	gi|385803168|ref|YP_005839568.1|	-	0.056	12.4	1.3	0.075	12.0	0.9	1.2	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
Uds1	PF15456.1	gi|385803168|ref|YP_005839568.1|	-	0.064	13.2	1.8	0.085	12.8	1.2	1.2	1	0	0	1	1	1	0	Up-regulated	During	Septation
FH2	PF02181.18	gi|385803168|ref|YP_005839568.1|	-	0.074	11.9	0.7	0.083	11.7	0.5	1.1	1	0	0	1	1	1	0	Formin	Homology	2	Domain
DUF2730	PF10805.3	gi|385803168|ref|YP_005839568.1|	-	0.083	12.6	0.2	0.13	12.0	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
FlxA	PF14282.1	gi|385803168|ref|YP_005839568.1|	-	0.091	12.7	1.9	0.15	12.0	1.3	1.5	1	1	0	1	1	1	0	FlxA-like	protein
TPD52	PF04201.10	gi|385803168|ref|YP_005839568.1|	-	0.18	11.5	3.1	0.26	10.9	2.2	1.4	1	1	0	1	1	1	0	Tumour	protein	D52	family
Spc24	PF08286.6	gi|385803168|ref|YP_005839568.1|	-	1	9.0	4.6	1.6	8.4	3.1	1.6	1	1	0	1	1	1	0	Spc24	subunit	of	Ndc80
Gas_vesicle	PF00741.13	gi|385803169|ref|YP_005839569.1|	-	1e-15	57.3	3.5	1.4e-15	56.8	2.4	1.2	1	0	0	1	1	1	1	Gas	vesicle	protein
DUF883	PF05957.8	gi|385803170|ref|YP_005839570.1|	-	0.0073	16.6	6.7	0.0073	16.6	4.6	1.6	2	0	0	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF883)
MCPVI	PF02993.9	gi|385803170|ref|YP_005839570.1|	-	0.21	11.7	4.6	0.22	11.6	3.2	1.0	1	0	0	1	1	1	0	Minor	capsid	protein	VI
DUF1168	PF06658.7	gi|385803170|ref|YP_005839570.1|	-	0.74	9.3	15.7	1	8.9	10.9	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1168)
Borrelia_P83	PF05262.6	gi|385803170|ref|YP_005839570.1|	-	0.94	7.6	7.9	0.99	7.5	5.5	1.1	1	0	0	1	1	1	0	Borrelia	P83/100	protein
SDH_alpha	PF03313.10	gi|385803170|ref|YP_005839570.1|	-	1.1	8.2	3.4	1.2	8.1	2.4	1.0	1	0	0	1	1	1	0	Serine	dehydratase	alpha	chain
Mnd1	PF03962.10	gi|385803170|ref|YP_005839570.1|	-	1.3	8.6	7.5	1.6	8.3	5.2	1.2	1	0	0	1	1	1	0	Mnd1	family
RF-1	PF00472.15	gi|385803170|ref|YP_005839570.1|	-	1.4	8.7	12.0	2	8.2	8.2	1.4	1	1	0	1	1	1	0	RF-1	domain
DUF4407	PF14362.1	gi|385803170|ref|YP_005839570.1|	-	1.4	7.8	6.7	1.4	7.8	4.7	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
BBS2_C	PF14782.1	gi|385803170|ref|YP_005839570.1|	-	1.4	7.3	6.1	1.6	7.2	4.2	1.1	1	0	0	1	1	1	0	Ciliary	BBSome	complex	subunit	2,	C-terminal
Host_attach	PF10116.4	gi|385803170|ref|YP_005839570.1|	-	1.9	8.6	7.5	2.7	8.2	5.2	1.3	1	0	0	1	1	1	0	Protein	required	for	attachment	to	host	cells
ELL	PF10390.4	gi|385803170|ref|YP_005839570.1|	-	2	7.5	11.6	2.4	7.3	8.0	1.0	1	0	0	1	1	1	0	RNA	polymerase	II	elongation	factor	ELL
SAPS	PF04499.10	gi|385803170|ref|YP_005839570.1|	-	4	5.9	7.1	4.2	5.8	4.9	1.0	1	0	0	1	1	1	0	SIT4	phosphatase-associated	protein
FAM60A	PF15396.1	gi|385803170|ref|YP_005839570.1|	-	4	7.1	8.6	4.5	6.9	6.0	1.1	1	0	0	1	1	1	0	Protein	Family	FAM60A
GvpH	PF05455.6	gi|385803171|ref|YP_005839571.1|	-	8.7e-20	71.0	7.0	4.6e-19	68.7	3.0	2.3	1	1	1	2	2	2	2	GvpH
GvpG	PF05120.7	gi|385803172|ref|YP_005839572.1|	-	0.0038	16.9	4.3	0.0046	16.7	3.0	1.1	1	0	0	1	1	1	1	Gas	vesicle	protein	G
Orthopox_A49R	PF06489.6	gi|385803172|ref|YP_005839572.1|	-	0.12	12.3	0.0	0.12	12.3	0.0	1.1	1	0	0	1	1	1	0	Orthopoxvirus	A49R	protein
GvpL_GvpF	PF06386.6	gi|385803173|ref|YP_005839573.1|	-	6.2e-54	183.2	0.1	7.5e-30	104.3	0.0	2.0	1	1	1	2	2	2	2	Gas	vesicle	synthesis	protein	GvpL/GvpF
TarH	PF02203.10	gi|385803173|ref|YP_005839573.1|	-	0.11	12.3	0.0	0.19	11.5	0.0	1.3	1	0	0	1	1	1	0	Tar	ligand	binding	domain	homologue
DUF2375	PF09558.5	gi|385803173|ref|YP_005839573.1|	-	0.13	12.1	0.0	0.28	11.0	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2375)
CbiA	PF01656.18	gi|385803174|ref|YP_005839574.1|	-	6.9e-28	97.3	0.0	9.4e-28	96.9	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|385803174|ref|YP_005839574.1|	-	1.8e-12	47.4	0.0	5.5e-07	29.6	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
MipZ	PF09140.6	gi|385803174|ref|YP_005839574.1|	-	5.4e-10	38.7	0.8	9.1e-09	34.7	0.1	2.3	1	1	0	2	2	2	1	ATPase	MipZ
Fer4_NifH	PF00142.13	gi|385803174|ref|YP_005839574.1|	-	1.5e-07	30.8	0.1	2e-06	27.1	0.0	2.0	1	1	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
ArsA_ATPase	PF02374.10	gi|385803174|ref|YP_005839574.1|	-	5e-05	22.4	0.8	0.00012	21.2	0.3	1.8	2	1	0	2	2	2	1	Anion-transporting	ATPase
YhjQ	PF06564.7	gi|385803174|ref|YP_005839574.1|	-	0.001	18.5	0.3	0.97	8.7	0.0	2.1	2	0	0	2	2	2	2	YhjQ	protein
VirC1	PF07015.6	gi|385803174|ref|YP_005839574.1|	-	0.0016	17.5	0.3	0.012	14.7	0.0	2.2	2	0	0	2	2	2	1	VirC1	protein
AAA_25	PF13481.1	gi|385803174|ref|YP_005839574.1|	-	0.018	14.4	0.0	0.03	13.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_19	PF13245.1	gi|385803174|ref|YP_005839574.1|	-	0.039	13.6	0.3	0.094	12.4	0.2	1.6	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_17	PF13207.1	gi|385803174|ref|YP_005839574.1|	-	0.14	12.9	0.2	0.39	11.5	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
GvpO	PF05800.6	gi|385803177|ref|YP_005839577.1|	-	1.6e-35	121.0	2.3	2.3e-35	120.5	1.6	1.2	1	0	0	1	1	1	1	Gas	vesicle	synthesis	protein	GvpO
DUF2072	PF09845.4	gi|385803177|ref|YP_005839577.1|	-	0.31	10.9	5.6	0.88	9.4	2.0	2.2	1	1	1	2	2	2	0	Zn-ribbon	containing	protein	(DUF2072)
AAA_5	PF07728.9	gi|385803178|ref|YP_005839578.1|	-	5.7e-18	64.9	0.0	5.7e-17	61.7	0.0	2.2	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.24	gi|385803178|ref|YP_005839578.1|	-	6.3e-06	26.4	0.0	1.7e-05	25.0	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|385803178|ref|YP_005839578.1|	-	0.00017	21.7	0.0	0.00045	20.3	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
Sigma54_activ_2	PF14532.1	gi|385803178|ref|YP_005839578.1|	-	0.00019	21.4	0.0	0.00065	19.7	0.0	2.0	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_3	PF07726.6	gi|385803178|ref|YP_005839578.1|	-	0.00028	20.4	0.0	0.014	14.9	0.0	2.3	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.21	gi|385803178|ref|YP_005839578.1|	-	0.00051	19.5	0.0	0.0061	16.0	0.0	2.2	2	0	0	2	2	2	1	Sigma-54	interaction	domain
IstB_IS21	PF01695.12	gi|385803178|ref|YP_005839578.1|	-	0.0012	18.3	0.0	0.0023	17.3	0.0	1.5	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
Arch_ATPase	PF01637.13	gi|385803178|ref|YP_005839578.1|	-	0.0014	18.4	0.0	0.0044	16.7	0.0	1.8	2	0	0	2	2	2	1	Archaeal	ATPase
AAA_17	PF13207.1	gi|385803178|ref|YP_005839578.1|	-	0.0014	19.4	0.0	0.004	17.9	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
DNA_pol3_beta	PF00712.14	gi|385803178|ref|YP_005839578.1|	-	0.002	18.0	0.2	0.011	15.6	0.0	2.2	3	0	0	3	3	2	1	DNA	polymerase	III	beta	subunit,	N-terminal	domain
AAA_14	PF13173.1	gi|385803178|ref|YP_005839578.1|	-	0.0025	17.6	0.0	0.0056	16.5	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|385803178|ref|YP_005839578.1|	-	0.0035	17.2	0.0	0.0095	15.8	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
IPT	PF01745.11	gi|385803178|ref|YP_005839578.1|	-	0.0049	16.0	0.0	0.0089	15.2	0.0	1.4	1	0	0	1	1	1	1	Isopentenyl	transferase
ABC_tran	PF00005.22	gi|385803178|ref|YP_005839578.1|	-	0.0093	16.2	0.0	0.03	14.6	0.0	2.0	2	0	0	2	2	2	1	ABC	transporter
AAA_16	PF13191.1	gi|385803178|ref|YP_005839578.1|	-	0.0096	15.9	0.0	0.024	14.6	0.0	1.7	2	0	0	2	2	2	1	AAA	ATPase	domain
KaiC	PF06745.8	gi|385803178|ref|YP_005839578.1|	-	0.013	14.5	0.1	1.7	7.7	0.0	2.4	2	0	0	2	2	2	0	KaiC
NACHT	PF05729.7	gi|385803178|ref|YP_005839578.1|	-	0.015	14.9	0.0	0.039	13.5	0.0	1.7	2	0	0	2	2	1	0	NACHT	domain
ATP-synt_ab	PF00006.20	gi|385803178|ref|YP_005839578.1|	-	0.016	14.6	0.0	0.023	14.1	0.0	1.3	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_18	PF13238.1	gi|385803178|ref|YP_005839578.1|	-	0.02	15.1	0.0	0.02	15.1	0.0	2.0	2	0	0	2	2	1	0	AAA	domain
PhoH	PF02562.11	gi|385803178|ref|YP_005839578.1|	-	0.023	13.9	0.0	0.045	12.9	0.0	1.5	1	0	0	1	1	1	0	PhoH-like	protein
AAA_28	PF13521.1	gi|385803178|ref|YP_005839578.1|	-	0.033	14.1	0.0	0.12	12.3	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
RuvB_N	PF05496.7	gi|385803178|ref|YP_005839578.1|	-	0.034	13.2	0.0	0.27	10.2	0.0	2.3	2	1	1	3	3	3	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_25	PF13481.1	gi|385803178|ref|YP_005839578.1|	-	0.056	12.8	0.0	0.14	11.5	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_19	PF13245.1	gi|385803178|ref|YP_005839578.1|	-	0.078	12.7	0.0	0.23	11.2	0.0	1.8	1	0	0	1	1	1	0	Part	of	AAA	domain
ResIII	PF04851.10	gi|385803178|ref|YP_005839578.1|	-	0.098	12.4	0.0	0.23	11.2	0.0	1.6	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
AAA_7	PF12775.2	gi|385803178|ref|YP_005839578.1|	-	0.14	11.2	0.0	0.21	10.6	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region	D3
RNA_helicase	PF00910.17	gi|385803178|ref|YP_005839578.1|	-	0.14	12.2	0.0	0.33	11.1	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
Halo_GVPC	PF05465.8	gi|385803179|ref|YP_005839579.1|	-	5.2e-42	140.9	95.3	9.9e-11	41.2	3.0	8.3	8	0	0	8	8	8	6	Halobacterial	gas	vesicle	protein	C	(GVPC)	repeat
ROS_MUCR	PF05443.6	gi|385803179|ref|YP_005839579.1|	-	1.8e-05	24.5	1.2	0.00015	21.5	0.0	2.8	1	1	2	3	3	3	1	ROS/MUCR	transcriptional	regulator	protein
TPR_MLP1_2	PF07926.7	gi|385803179|ref|YP_005839579.1|	-	0.00015	21.5	0.3	0.0082	15.8	0.0	3.0	1	1	1	2	2	2	1	TPR/MLP1/MLP2-like	protein
LOH1CR12	PF10158.4	gi|385803179|ref|YP_005839579.1|	-	0.0011	18.7	2.6	0.87	9.3	0.1	4.0	1	1	2	4	4	4	1	Tumour	suppressor	protein
DUF1664	PF07889.7	gi|385803179|ref|YP_005839579.1|	-	0.0012	18.5	1.2	0.33	10.7	0.0	3.4	1	1	3	4	4	4	1	Protein	of	unknown	function	(DUF1664)
IncA	PF04156.9	gi|385803179|ref|YP_005839579.1|	-	0.0048	16.5	2.1	1.6	8.2	0.9	3.0	1	1	1	2	2	2	2	IncA	protein
DHC_N1	PF08385.7	gi|385803179|ref|YP_005839579.1|	-	0.013	13.9	6.0	0.0076	14.6	2.3	1.6	1	1	1	2	2	2	0	Dynein	heavy	chain,	N-terminal	region	1
Baculo_PEP_C	PF04513.7	gi|385803179|ref|YP_005839579.1|	-	0.014	15.2	0.7	0.68	9.7	0.7	2.8	1	1	1	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Phage_GP20	PF06810.6	gi|385803179|ref|YP_005839579.1|	-	0.053	12.9	2.5	9.9	5.5	0.0	3.4	1	1	3	4	4	4	0	Phage	minor	structural	protein	GP20
CCP_MauG	PF03150.9	gi|385803179|ref|YP_005839579.1|	-	0.065	13.5	14.9	1.1	9.5	3.7	3.4	1	1	0	2	2	2	0	Di-haem	cytochrome	c	peroxidase
PilJ	PF13675.1	gi|385803179|ref|YP_005839579.1|	-	0.071	13.4	8.5	6	7.2	0.6	3.8	1	1	2	3	3	3	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
NPV_P10	PF05531.7	gi|385803179|ref|YP_005839579.1|	-	0.08	13.1	6.8	15	5.9	0.9	4.0	2	1	1	3	3	3	0	Nucleopolyhedrovirus	P10	protein
MutS_III	PF05192.13	gi|385803179|ref|YP_005839579.1|	-	0.097	12.4	6.0	0.15	11.7	3.9	1.5	1	1	0	1	1	1	0	MutS	domain	III
DUF3486	PF11985.3	gi|385803179|ref|YP_005839579.1|	-	0.99	9.4	7.2	2.5	8.1	5.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3486)
Filament	PF00038.16	gi|385803179|ref|YP_005839579.1|	-	1.1	8.6	13.2	6.4	6.1	8.3	2.4	1	1	0	1	1	1	0	Intermediate	filament	protein
DUF1033	PF06279.6	gi|385803179|ref|YP_005839579.1|	-	1.6	8.5	14.7	2.1	8.1	0.2	4.4	1	1	2	4	4	4	0	Protein	of	unknown	function	(DUF1033)
Gas_vesicle	PF00741.13	gi|385803180|ref|YP_005839580.1|	-	6.1e-16	58.0	6.4	7.9e-16	57.6	4.4	1.2	1	0	0	1	1	1	1	Gas	vesicle	protein
GATase	PF00117.23	gi|385803181|ref|YP_005839581.1|	-	1.1e-48	165.2	0.0	1.2e-48	165.1	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|385803181|ref|YP_005839581.1|	-	9.4e-08	31.7	0.3	2.2e-07	30.5	0.2	1.6	1	1	0	1	1	1	1	Peptidase	C26
Chorismate_bind	PF00425.13	gi|385803182|ref|YP_005839582.1|	-	1.7e-97	325.7	0.0	2.4e-97	325.2	0.0	1.2	1	0	0	1	1	1	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.8	gi|385803182|ref|YP_005839582.1|	-	1.5e-14	54.1	0.0	5.6e-14	52.3	0.0	1.9	2	0	0	2	2	2	1	Anthranilate	synthase	component	I,	N	terminal	region
Hexapep	PF00132.19	gi|385803183|ref|YP_005839583.1|	-	9.4e-13	47.0	6.9	2e-08	33.3	1.9	3.4	2	1	1	3	3	3	2	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.1	gi|385803183|ref|YP_005839583.1|	-	9.4e-05	21.8	2.7	0.0026	17.2	0.6	2.8	2	1	0	2	2	2	1	Hexapeptide	repeat	of	succinyl-transferase
SATase_N	PF06426.9	gi|385803183|ref|YP_005839583.1|	-	0.00013	22.1	0.0	0.00023	21.3	0.0	1.3	1	0	0	1	1	1	1	Serine	acetyltransferase,	N-terminal
ABC_membrane	PF00664.18	gi|385803184|ref|YP_005839584.1|	-	2.7e-36	125.4	4.5	3.5e-36	125.0	3.1	1.1	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
ABC_tran	PF00005.22	gi|385803184|ref|YP_005839584.1|	-	1.4e-34	119.3	0.0	2.5e-34	118.4	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.14	gi|385803184|ref|YP_005839584.1|	-	4.8e-05	22.6	0.0	0.00015	21.1	0.0	1.6	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
Zeta_toxin	PF06414.7	gi|385803184|ref|YP_005839584.1|	-	0.00013	21.0	0.0	0.00035	19.7	0.0	1.6	1	0	0	1	1	1	1	Zeta	toxin
AAA_17	PF13207.1	gi|385803184|ref|YP_005839584.1|	-	0.00019	22.2	0.3	0.00071	20.3	0.2	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_21	PF13304.1	gi|385803184|ref|YP_005839584.1|	-	0.0029	17.6	0.0	0.16	11.8	0.0	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|385803184|ref|YP_005839584.1|	-	0.0094	15.3	1.2	0.094	12.1	0.0	2.8	3	0	0	3	3	3	1	AAA	domain
AAA_29	PF13555.1	gi|385803184|ref|YP_005839584.1|	-	0.019	14.5	0.2	0.048	13.1	0.1	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|385803184|ref|YP_005839584.1|	-	0.03	13.5	0.0	0.054	12.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
APS_kinase	PF01583.15	gi|385803184|ref|YP_005839584.1|	-	0.032	13.9	0.0	0.071	12.7	0.0	1.6	1	0	0	1	1	1	0	Adenylylsulphate	kinase
KAP_NTPase	PF07693.9	gi|385803184|ref|YP_005839584.1|	-	0.035	13.0	0.0	0.074	12.0	0.0	1.6	2	0	0	2	2	2	0	KAP	family	P-loop	domain
AAA_22	PF13401.1	gi|385803184|ref|YP_005839584.1|	-	0.046	13.8	0.5	0.95	9.6	0.4	2.7	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.24	gi|385803184|ref|YP_005839584.1|	-	0.067	13.3	0.1	1.5	9.0	0.1	2.5	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.1	gi|385803184|ref|YP_005839584.1|	-	0.068	13.4	0.1	0.3	11.4	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.1	gi|385803184|ref|YP_005839584.1|	-	0.92	9.4	8.5	0.34	10.8	2.2	2.9	3	1	0	3	3	3	0	AAA	ATPase	domain
PAS_9	PF13426.1	gi|385803185|ref|YP_005839585.1|	-	6.1e-13	49.0	0.0	1.6e-12	47.6	0.0	1.6	2	0	0	2	2	2	1	PAS	domain
PAS	PF00989.19	gi|385803185|ref|YP_005839585.1|	-	0.00077	19.2	0.0	0.0019	17.9	0.0	1.6	1	0	0	1	1	1	1	PAS	fold
PAS_4	PF08448.5	gi|385803185|ref|YP_005839585.1|	-	0.0015	18.4	0.0	0.0023	17.9	0.0	1.3	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.1	gi|385803185|ref|YP_005839585.1|	-	0.003	17.3	0.0	0.0081	15.9	0.0	1.8	1	0	0	1	1	1	1	PAS	domain
PAS_3	PF08447.6	gi|385803185|ref|YP_005839585.1|	-	0.1	12.7	0.0	0.31	11.1	0.0	1.9	1	1	0	1	1	1	0	PAS	fold
DUF1819	PF08849.6	gi|385803185|ref|YP_005839585.1|	-	0.11	11.8	0.0	0.17	11.2	0.0	1.2	1	0	0	1	1	1	0	Putative	inner	membrane	protein	(DUF1819)
Methyltransf_11	PF08241.7	gi|385803186|ref|YP_005839586.1|	-	3.2e-09	37.1	0.0	5.6e-09	36.3	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|385803186|ref|YP_005839586.1|	-	0.00028	20.6	0.0	0.00034	20.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|385803186|ref|YP_005839586.1|	-	0.0012	19.2	0.0	0.0019	18.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|385803186|ref|YP_005839586.1|	-	0.013	15.8	0.0	0.032	14.5	0.0	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
MetW	PF07021.7	gi|385803186|ref|YP_005839586.1|	-	0.023	14.0	0.0	0.031	13.6	0.0	1.2	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
N6_N4_Mtase	PF01555.13	gi|385803186|ref|YP_005839586.1|	-	0.087	12.2	0.0	0.13	11.6	0.0	1.2	1	0	0	1	1	1	0	DNA	methylase
Methyltransf_31	PF13847.1	gi|385803186|ref|YP_005839586.1|	-	0.091	12.3	0.0	0.12	11.9	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
DUF21	PF01595.15	gi|385803188|ref|YP_005839588.1|	-	0.026	13.8	0.8	0.029	13.6	0.6	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF21
Phage_holin	PF04688.8	gi|385803188|ref|YP_005839588.1|	-	0.046	13.2	0.7	0.046	13.2	0.5	1.5	2	0	0	2	2	2	0	Phage	lysis	protein,	holin
ABC2_membrane_2	PF12679.2	gi|385803188|ref|YP_005839588.1|	-	0.32	9.8	2.0	0.36	9.6	1.4	1.0	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
Methyltransf_11	PF08241.7	gi|385803190|ref|YP_005839590.1|	-	2.3e-15	56.8	0.0	4e-15	56.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|385803190|ref|YP_005839590.1|	-	2.3e-10	40.2	0.0	4.5e-10	39.2	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|385803190|ref|YP_005839590.1|	-	1.8e-09	37.5	0.0	2.6e-09	36.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|385803190|ref|YP_005839590.1|	-	1.9e-08	34.6	0.0	6.3e-08	32.9	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|385803190|ref|YP_005839590.1|	-	6.9e-08	33.0	0.0	1.3e-07	32.1	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|385803190|ref|YP_005839590.1|	-	1.3e-07	31.0	0.0	4.5e-07	29.2	0.0	1.8	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.7	gi|385803190|ref|YP_005839590.1|	-	2.3e-06	27.9	0.0	6.5e-06	26.5	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
CMAS	PF02353.15	gi|385803190|ref|YP_005839590.1|	-	4.6e-05	22.6	0.0	6.6e-05	22.1	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_8	PF05148.10	gi|385803190|ref|YP_005839590.1|	-	0.00093	18.8	0.0	0.0017	18.0	0.0	1.4	1	1	0	1	1	1	1	Hypothetical	methyltransferase
Methyltransf_26	PF13659.1	gi|385803190|ref|YP_005839590.1|	-	0.0013	18.7	0.1	0.0025	17.8	0.1	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_9	PF08003.6	gi|385803190|ref|YP_005839590.1|	-	0.0039	15.9	0.0	0.0055	15.4	0.0	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
MetW	PF07021.7	gi|385803190|ref|YP_005839590.1|	-	0.043	13.1	0.1	0.066	12.5	0.0	1.3	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
MTS	PF05175.9	gi|385803190|ref|YP_005839590.1|	-	0.13	11.6	0.1	0.23	10.8	0.1	1.5	1	1	0	1	1	1	0	Methyltransferase	small	domain
DJ-1_PfpI	PF01965.19	gi|385803191|ref|YP_005839591.1|	-	1.3e-18	66.9	0.2	3.1e-18	65.6	0.1	1.7	1	1	0	1	1	1	1	DJ-1/PfpI	family
DUF4066	PF13278.1	gi|385803191|ref|YP_005839591.1|	-	0.038	13.2	0.1	0.2	10.9	0.0	2.0	2	0	0	2	2	2	0	Putative	amidotransferase
ThuA	PF06283.6	gi|385803191|ref|YP_005839591.1|	-	0.065	12.9	0.0	0.09	12.4	0.0	1.2	1	0	0	1	1	1	0	Trehalose	utilisation
Nitro_FeMo-Co	PF02579.12	gi|385803191|ref|YP_005839591.1|	-	0.082	12.9	0.0	0.79	9.8	0.0	2.4	3	0	0	3	3	3	0	Dinitrogenase	iron-molybdenum	cofactor
GATase_3	PF07685.9	gi|385803191|ref|YP_005839591.1|	-	0.12	11.9	0.0	0.19	11.3	0.0	1.3	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
Amino_oxidase	PF01593.19	gi|385803192|ref|YP_005839592.1|	-	1.1e-25	90.6	0.6	9.3e-25	87.5	0.4	2.2	1	1	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.1	gi|385803192|ref|YP_005839592.1|	-	1.2e-16	60.4	0.1	3.8e-16	58.8	0.0	1.9	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.19	gi|385803192|ref|YP_005839592.1|	-	1.6e-16	60.2	0.6	2.8e-08	33.0	0.0	2.6	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.22	gi|385803192|ref|YP_005839592.1|	-	1.5e-09	38.1	1.5	2.3e-07	31.1	0.2	2.8	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|385803192|ref|YP_005839592.1|	-	9.3e-07	29.1	0.1	0.0033	17.5	0.0	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|385803192|ref|YP_005839592.1|	-	5.5e-06	25.6	0.2	1e-05	24.8	0.2	1.4	1	0	0	1	1	1	1	FAD	binding	domain
Thi4	PF01946.12	gi|385803192|ref|YP_005839592.1|	-	1.2e-05	24.5	0.1	2.1e-05	23.7	0.0	1.3	1	0	0	1	1	1	1	Thi4	family
HI0933_like	PF03486.9	gi|385803192|ref|YP_005839592.1|	-	1.5e-05	23.6	0.1	0.0041	15.6	0.1	2.1	2	0	0	2	2	2	2	HI0933-like	protein
Pyr_redox_2	PF07992.9	gi|385803192|ref|YP_005839592.1|	-	5.6e-05	23.1	0.0	0.0015	18.4	0.1	2.2	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|385803192|ref|YP_005839592.1|	-	0.00021	20.2	0.5	0.00055	18.8	0.3	1.7	1	0	0	1	1	1	1	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|385803192|ref|YP_005839592.1|	-	0.00046	19.3	0.0	0.00066	18.8	0.0	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
GIDA	PF01134.17	gi|385803192|ref|YP_005839592.1|	-	0.011	14.6	0.6	0.02	13.7	0.4	1.4	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
Strep_67kDa_ant	PF06100.6	gi|385803192|ref|YP_005839592.1|	-	0.039	12.2	0.0	0.061	11.6	0.0	1.3	1	0	0	1	1	1	0	Streptococcal	67	kDa	myosin-cross-reactive	antigen	like	family
NAD_binding_9	PF13454.1	gi|385803192|ref|YP_005839592.1|	-	0.41	10.4	3.0	0.43	10.3	0.2	2.2	2	0	0	2	2	2	0	FAD-NAD(P)-binding
TK	PF00265.13	gi|385803193|ref|YP_005839593.1|	-	1.8e-47	161.1	0.0	3.8e-31	108.0	0.0	2.0	1	1	1	2	2	2	2	Thymidine	kinase
Helicase_RecD	PF05127.9	gi|385803193|ref|YP_005839593.1|	-	0.11	12.0	0.0	0.17	11.5	0.0	1.3	1	0	0	1	1	1	0	Helicase
Yip1	PF04893.12	gi|385803194|ref|YP_005839594.1|	-	5.1e-16	58.6	17.0	6.3e-16	58.3	11.8	1.1	1	0	0	1	1	1	1	Yip1	domain
tRNA_anti-codon	PF01336.20	gi|385803195|ref|YP_005839595.1|	-	9e-11	41.4	0.1	1.7e-10	40.5	0.1	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
S1	PF00575.18	gi|385803195|ref|YP_005839595.1|	-	2.6e-07	30.6	0.0	1.1e-06	28.6	0.0	2.1	1	0	0	1	1	1	1	S1	RNA	binding	domain
tRNA_anti_2	PF13742.1	gi|385803195|ref|YP_005839595.1|	-	0.0097	15.7	0.0	0.021	14.7	0.0	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
Macoilin	PF09726.4	gi|385803195|ref|YP_005839595.1|	-	3	6.0	6.0	3.9	5.6	4.1	1.1	1	0	0	1	1	1	0	Transmembrane	protein
Med3	PF11593.3	gi|385803195|ref|YP_005839595.1|	-	6.5	5.8	14.9	13	4.9	10.3	1.4	1	0	0	1	1	1	0	Mediator	complex	subunit	3	fungal
Radical_SAM	PF04055.16	gi|385803196|ref|YP_005839596.1|	-	8.2e-24	84.6	0.0	1.5e-23	83.7	0.0	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
Acetyltransf_1	PF00583.19	gi|385803196|ref|YP_005839596.1|	-	8.6e-08	32.1	1.3	2.2e-07	30.8	0.4	2.1	2	1	0	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|385803196|ref|YP_005839596.1|	-	0.014	15.5	0.4	0.053	13.6	0.1	2.2	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.19	gi|385803197|ref|YP_005839597.1|	-	2.4e-10	40.2	0.0	5.6e-10	39.1	0.0	1.6	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_9	PF13527.1	gi|385803197|ref|YP_005839597.1|	-	1.8e-07	31.0	0.0	0.00013	21.8	0.0	2.1	2	0	0	2	2	2	2	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|385803197|ref|YP_005839597.1|	-	3.1e-07	30.4	0.0	2.8e-06	27.3	0.0	2.0	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|385803197|ref|YP_005839597.1|	-	0.0014	18.7	0.1	0.0068	16.5	0.0	1.9	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_5	PF13444.1	gi|385803197|ref|YP_005839597.1|	-	0.0048	17.4	0.0	0.032	14.7	0.0	2.1	1	1	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|385803197|ref|YP_005839597.1|	-	0.017	14.8	0.0	0.03	14.0	0.0	1.4	1	0	0	1	1	1	0	FR47-like	protein
Autoind_synth	PF00765.12	gi|385803197|ref|YP_005839597.1|	-	0.018	14.2	0.0	0.03	13.5	0.0	1.3	1	0	0	1	1	1	0	Autoinducer	synthetase
Acetyltransf_CG	PF14542.1	gi|385803197|ref|YP_005839597.1|	-	0.063	13.1	0.1	0.11	12.4	0.0	1.3	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
DUF3846	PF12957.2	gi|385803198|ref|YP_005839598.1|	-	0.036	13.8	0.2	0.14	11.9	0.0	2.1	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3846)
DUF2140	PF09911.4	gi|385803198|ref|YP_005839598.1|	-	0.2	10.8	4.0	0.35	10.0	2.8	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2140)
Mem_trans	PF03547.13	gi|385803198|ref|YP_005839598.1|	-	0.38	8.9	3.7	0.42	8.8	2.6	1.3	1	0	0	1	1	1	0	Membrane	transport	protein
ATG2_CAD	PF13329.1	gi|385803198|ref|YP_005839598.1|	-	0.48	10.0	6.4	0.38	10.3	3.1	1.7	2	0	0	2	2	2	0	Autophagy-related	protein	2	CAD	motif
TFIIA	PF03153.8	gi|385803198|ref|YP_005839598.1|	-	4.4	7.1	17.0	4.9	6.9	11.8	1.1	1	0	0	1	1	1	0	Transcription	factor	IIA,	alpha/beta	subunit
FbpA	PF05833.6	gi|385803199|ref|YP_005839599.1|	-	5.1e-98	328.5	0.6	6.6e-98	328.2	0.4	1.1	1	0	0	1	1	1	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
DUF814	PF05670.8	gi|385803199|ref|YP_005839599.1|	-	1.4e-25	88.9	0.0	2.7e-25	88.0	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF814)
eRF1_1	PF03463.10	gi|385803200|ref|YP_005839600.1|	-	2.2e-29	101.7	0.1	3.7e-29	100.9	0.0	1.4	1	0	0	1	1	1	1	eRF1	domain	1
eRF1_3	PF03465.10	gi|385803200|ref|YP_005839600.1|	-	6.8e-24	84.3	1.0	4.3e-23	81.7	0.0	2.6	3	0	0	3	3	3	1	eRF1	domain	3
eRF1_2	PF03464.10	gi|385803200|ref|YP_005839600.1|	-	5.1e-19	68.9	0.1	9e-19	68.1	0.1	1.4	1	0	0	1	1	1	1	eRF1	domain	2
Glyco_hydro_3_C	PF01915.17	gi|385803200|ref|YP_005839600.1|	-	0.025	14.1	2.8	0.062	12.8	1.3	2.0	2	1	1	3	3	3	0	Glycosyl	hydrolase	family	3	C-terminal	domain
OCD_Mu_crystall	PF02423.10	gi|385803201|ref|YP_005839601.1|	-	3e-08	32.7	0.0	3.1e-08	32.7	0.0	1.0	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
DDE_5	PF13546.1	gi|385803202|ref|YP_005839602.1|	-	3e-20	72.2	0.0	4.5e-20	71.6	0.0	1.2	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.16	gi|385803202|ref|YP_005839602.1|	-	3.3e-18	66.0	0.3	6e-18	65.1	0.1	1.6	2	0	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.7	gi|385803202|ref|YP_005839602.1|	-	0.00019	20.5	0.4	0.00083	18.4	0.3	1.8	1	1	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1_6	PF13751.1	gi|385803202|ref|YP_005839602.1|	-	0.0098	15.8	0.0	0.035	14.1	0.0	1.9	2	0	0	2	2	2	1	Transposase	DDE	domain
DUF1469	PF07332.6	gi|385803203|ref|YP_005839603.1|	-	0.06	13.0	0.1	0.064	12.9	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
IncA	PF04156.9	gi|385803203|ref|YP_005839603.1|	-	0.061	12.9	1.8	0.072	12.6	1.3	1.0	1	0	0	1	1	1	0	IncA	protein
PetG	PF02529.10	gi|385803203|ref|YP_005839603.1|	-	0.18	11.3	0.8	0.47	10.0	0.5	1.7	1	0	0	1	1	1	0	Cytochrome	B6-F	complex	subunit	5
PT-VENN	PF04829.8	gi|385803203|ref|YP_005839603.1|	-	5.7	6.5	6.2	9.9	5.8	4.3	1.6	1	1	0	1	1	1	0	Pre-toxin	domain	with	VENN	motif
Creatininase	PF02633.9	gi|385803204|ref|YP_005839604.1|	-	3e-68	229.4	0.0	3.4e-68	229.2	0.0	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
Thioredoxin_4	PF13462.1	gi|385803205|ref|YP_005839605.1|	-	1.7e-31	109.4	0.0	2e-31	109.2	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|385803205|ref|YP_005839605.1|	-	3.6e-06	27.1	0.1	1.4e-05	25.2	0.1	1.8	1	1	0	1	1	1	1	Thioredoxin-like	domain
DSBA	PF01323.15	gi|385803205|ref|YP_005839605.1|	-	1.6e-05	24.5	1.2	0.0047	16.5	0.8	2.1	1	1	0	1	1	1	1	DSBA-like	thioredoxin	domain
Thioredoxin_3	PF13192.1	gi|385803205|ref|YP_005839605.1|	-	0.041	13.6	0.1	0.79	9.5	0.0	2.2	2	0	0	2	2	2	0	Thioredoxin	domain
Ribosomal_L21e	PF01157.13	gi|385803206|ref|YP_005839606.1|	-	0.0093	15.7	0.1	0.019	14.7	0.1	1.5	1	1	0	1	1	1	1	Ribosomal	protein	L21e
DUF1918	PF08940.6	gi|385803206|ref|YP_005839606.1|	-	0.047	13.0	0.1	0.059	12.7	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1918)
NifZ	PF04319.8	gi|385803206|ref|YP_005839606.1|	-	0.052	12.9	0.0	0.058	12.7	0.0	1.2	1	0	0	1	1	1	0	NifZ	domain
eIF-1a	PF01176.14	gi|385803206|ref|YP_005839606.1|	-	0.053	12.9	0.0	0.11	11.9	0.0	1.5	1	1	0	1	1	1	0	Translation	initiation	factor	1A	/	IF-1
RNA_binding	PF01877.12	gi|385803207|ref|YP_005839607.1|	-	2.9e-28	98.2	0.1	3.7e-28	97.9	0.1	1.1	1	0	0	1	1	1	1	RNA	binding
AhpC-TSA	PF00578.16	gi|385803208|ref|YP_005839608.1|	-	3.2e-13	49.4	0.0	4.4e-13	49.0	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|385803208|ref|YP_005839608.1|	-	3.4e-09	36.4	0.0	4.5e-09	35.9	0.0	1.1	1	0	0	1	1	1	1	Redoxin
Thioredoxin_2	PF13098.1	gi|385803208|ref|YP_005839608.1|	-	0.00065	19.8	0.0	0.00091	19.4	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_8	PF13905.1	gi|385803208|ref|YP_005839608.1|	-	0.0042	17.1	0.0	0.0076	16.3	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin-like
HSP20	PF00011.16	gi|385803209|ref|YP_005839609.1|	-	1e-20	73.5	0.2	1.3e-20	73.1	0.1	1.2	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
CS	PF04969.11	gi|385803209|ref|YP_005839609.1|	-	0.0053	17.2	0.0	0.014	15.9	0.0	1.8	1	1	0	1	1	1	1	CS	domain
DUF4097	PF13349.1	gi|385803209|ref|YP_005839609.1|	-	0.012	15.2	0.4	0.013	15.0	0.3	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4097)
GvpH	PF05455.6	gi|385803209|ref|YP_005839609.1|	-	0.041	13.5	1.7	0.14	11.7	0.6	2.4	1	1	1	2	2	2	0	GvpH
PIH1	PF08190.7	gi|385803209|ref|YP_005839609.1|	-	0.043	13.2	0.0	0.048	13.0	0.0	1.2	1	0	0	1	1	1	0	pre-RNA	processing	PIH1/Nop17
Frataxin_Cyay	PF01491.11	gi|385803209|ref|YP_005839609.1|	-	0.12	12.1	0.3	2	8.2	0.2	2.5	2	1	0	2	2	2	0	Frataxin-like	domain
AsnC_trans_reg	PF01037.16	gi|385803210|ref|YP_005839610.1|	-	1.4e-15	56.7	0.2	2.4e-15	55.9	0.1	1.4	1	0	0	1	1	1	1	AsnC	family
HTH_24	PF13412.1	gi|385803210|ref|YP_005839610.1|	-	3.4e-05	23.1	0.1	6.9e-05	22.1	0.0	1.6	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|385803210|ref|YP_005839610.1|	-	3.7e-05	23.1	1.7	5.9e-05	22.5	0.3	1.9	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.2	gi|385803210|ref|YP_005839610.1|	-	7.2e-05	22.3	0.2	0.00016	21.2	0.1	1.5	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|385803210|ref|YP_005839610.1|	-	0.0006	19.4	0.0	0.0014	18.2	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|385803210|ref|YP_005839610.1|	-	0.00071	19.1	0.0	0.0013	18.2	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
FeoC	PF09012.5	gi|385803210|ref|YP_005839610.1|	-	0.001	18.7	0.0	0.0018	17.9	0.0	1.3	1	0	0	1	1	1	1	FeoC	like	transcriptional	regulator
MarR	PF01047.17	gi|385803210|ref|YP_005839610.1|	-	0.001	18.7	0.0	0.0024	17.5	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_23	PF13384.1	gi|385803210|ref|YP_005839610.1|	-	0.0017	17.9	0.2	0.004	16.7	0.0	1.8	2	0	0	2	2	1	1	Homeodomain-like	domain
HTH_38	PF13936.1	gi|385803210|ref|YP_005839610.1|	-	0.0022	17.5	0.0	0.17	11.5	0.0	2.6	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|385803210|ref|YP_005839610.1|	-	0.0044	16.7	0.0	0.0091	15.7	0.0	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_11	PF08279.7	gi|385803210|ref|YP_005839610.1|	-	0.0064	16.1	0.0	0.015	14.9	0.0	1.6	2	0	0	2	2	2	1	HTH	domain
HTH_Tnp_ISL3	PF13542.1	gi|385803210|ref|YP_005839610.1|	-	0.01	15.0	0.0	0.025	13.7	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
Fe_dep_repress	PF01325.14	gi|385803210|ref|YP_005839610.1|	-	0.026	14.4	0.0	0.06	13.2	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_20	PF12840.2	gi|385803210|ref|YP_005839610.1|	-	0.026	14.3	0.1	0.046	13.5	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_29	PF13551.1	gi|385803210|ref|YP_005839610.1|	-	0.042	13.9	0.1	0.092	12.9	0.0	1.6	1	1	0	1	1	1	0	Winged	helix-turn	helix
RPA_C	PF08784.6	gi|385803210|ref|YP_005839610.1|	-	0.043	14.2	0.0	0.16	12.3	0.0	1.8	2	0	0	2	2	2	0	Replication	protein	A	C	terminal
HTH_28	PF13518.1	gi|385803210|ref|YP_005839610.1|	-	0.066	13.2	0.0	0.14	12.1	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_13	PF11972.3	gi|385803210|ref|YP_005839610.1|	-	0.076	12.8	0.0	0.15	11.9	0.0	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_27	PF13463.1	gi|385803210|ref|YP_005839610.1|	-	0.081	13.2	0.1	0.28	11.5	0.1	1.9	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Aminotran_1_2	PF00155.16	gi|385803211|ref|YP_005839611.1|	-	2.7e-70	237.1	0.0	3.1e-70	236.9	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.16	gi|385803211|ref|YP_005839611.1|	-	1.8e-06	27.3	0.0	3e-06	26.5	0.0	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_5	PF00266.14	gi|385803211|ref|YP_005839611.1|	-	4e-05	22.5	0.0	0.0002	20.2	0.0	1.8	2	0	0	2	2	2	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.12	gi|385803211|ref|YP_005839611.1|	-	0.0019	17.3	0.1	0.0029	16.7	0.1	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
CARDB	PF07705.6	gi|385803212|ref|YP_005839612.1|	-	5.7e-10	39.1	16.9	0.00024	21.0	0.2	4.3	4	0	0	4	4	4	4	CARDB
Transglut_C	PF00927.17	gi|385803212|ref|YP_005839612.1|	-	0.0077	16.2	0.3	0.09	12.8	0.0	2.7	3	1	0	3	3	3	1	Transglutaminase	family,	C-terminal	ig	like	domain
ABC_tran	PF00005.22	gi|385803213|ref|YP_005839613.1|	-	4.3e-34	117.7	0.0	6.3e-34	117.2	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385803213|ref|YP_005839613.1|	-	1.7e-10	41.3	0.0	1.9e-05	24.7	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|385803213|ref|YP_005839613.1|	-	1.4e-06	27.7	0.1	0.0042	16.3	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.1	gi|385803213|ref|YP_005839613.1|	-	8.2e-06	25.9	0.8	4.7e-05	23.5	0.6	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|385803213|ref|YP_005839613.1|	-	3e-05	23.4	0.2	5.1e-05	22.7	0.1	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|385803213|ref|YP_005839613.1|	-	0.00035	19.8	0.0	0.00056	19.1	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_16	PF13191.1	gi|385803213|ref|YP_005839613.1|	-	0.0015	18.5	0.1	0.0024	17.9	0.1	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_33	PF13671.1	gi|385803213|ref|YP_005839613.1|	-	0.0027	17.6	0.1	0.005	16.7	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|385803213|ref|YP_005839613.1|	-	0.0036	16.7	1.9	0.016	14.6	0.8	2.2	1	1	1	2	2	2	1	AAA-like	domain
AAA_23	PF13476.1	gi|385803213|ref|YP_005839613.1|	-	0.0039	17.5	0.0	0.0069	16.7	0.0	1.5	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.1	gi|385803213|ref|YP_005839613.1|	-	0.0049	16.4	0.2	0.076	12.5	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.1	gi|385803213|ref|YP_005839613.1|	-	0.0051	16.2	0.0	0.088	12.2	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|385803213|ref|YP_005839613.1|	-	0.0055	17.5	0.4	0.01	16.6	0.3	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.1	gi|385803213|ref|YP_005839613.1|	-	0.016	14.2	0.0	2.4	7.1	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_14	PF13173.1	gi|385803213|ref|YP_005839613.1|	-	0.03	14.2	0.0	0.088	12.7	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.12	gi|385803213|ref|YP_005839613.1|	-	0.039	13.3	0.1	0.089	12.2	0.0	1.6	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
T2SE	PF00437.15	gi|385803213|ref|YP_005839613.1|	-	0.039	12.8	0.0	0.066	12.0	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
MMR_HSR1	PF01926.18	gi|385803213|ref|YP_005839613.1|	-	0.062	13.2	0.4	0.16	11.9	0.3	1.9	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
ArgK	PF03308.11	gi|385803213|ref|YP_005839613.1|	-	0.073	11.8	0.1	0.12	11.1	0.1	1.3	1	0	0	1	1	1	0	ArgK	protein
MobB	PF03205.9	gi|385803213|ref|YP_005839613.1|	-	0.084	12.5	0.1	0.21	11.2	0.0	1.7	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_19	PF13245.1	gi|385803213|ref|YP_005839613.1|	-	0.11	12.2	0.1	0.33	10.7	0.0	1.8	2	0	0	2	2	1	0	Part	of	AAA	domain
SbcCD_C	PF13558.1	gi|385803213|ref|YP_005839613.1|	-	0.13	12.2	0.0	1.1	9.1	0.0	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_18	PF13238.1	gi|385803213|ref|YP_005839613.1|	-	0.14	12.4	0.7	0.25	11.6	0.5	1.8	1	1	0	1	1	1	0	AAA	domain
G-alpha	PF00503.15	gi|385803213|ref|YP_005839613.1|	-	0.15	10.7	0.0	0.15	10.7	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
AAA	PF00004.24	gi|385803213|ref|YP_005839613.1|	-	0.2	11.8	0.8	23	5.1	0.0	2.3	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
MacB_PCD	PF12704.2	gi|385803214|ref|YP_005839614.1|	-	6.1e-27	94.7	4.3	6.1e-27	94.7	3.0	2.8	2	1	1	3	3	3	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.16	gi|385803214|ref|YP_005839614.1|	-	1.7e-19	69.7	14.0	8.8e-19	67.4	7.2	2.2	2	0	0	2	2	2	1	FtsX-like	permease	family
TarH	PF02203.10	gi|385803214|ref|YP_005839614.1|	-	0.016	15.0	0.2	0.035	13.9	0.1	1.5	1	0	0	1	1	1	0	Tar	ligand	binding	domain	homologue
DUF4131	PF13567.1	gi|385803214|ref|YP_005839614.1|	-	0.017	14.5	0.0	0.017	14.5	0.0	2.6	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
YjgP_YjgQ	PF03739.9	gi|385803214|ref|YP_005839614.1|	-	0.47	9.1	5.6	0.71	8.5	2.6	2.0	2	0	0	2	2	2	0	Predicted	permease	YjgP/YjgQ	family
GSDH	PF07995.6	gi|385803215|ref|YP_005839615.1|	-	1e-107	360.0	0.0	1.2e-107	359.7	0.0	1.1	1	0	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
PapC_C	PF13953.1	gi|385803215|ref|YP_005839615.1|	-	0.12	12.0	0.1	0.57	9.8	0.0	2.0	2	0	0	2	2	2	0	PapC	C-terminal	domain
DUF543	PF04418.7	gi|385803217|ref|YP_005839617.1|	-	0.61	10.0	3.2	17	5.4	2.6	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF543)
TrbC	PF04956.8	gi|385803217|ref|YP_005839617.1|	-	0.65	10.0	4.6	1.2	9.1	3.2	1.4	1	0	0	1	1	1	0	TrbC/VIRB2	family
SKG6	PF08693.5	gi|385803217|ref|YP_005839617.1|	-	3.7	6.9	12.2	0.16	11.3	0.4	2.8	3	0	0	3	3	3	0	Transmembrane	alpha-helix	domain
TMV_coat	PF00721.16	gi|385803218|ref|YP_005839618.1|	-	0.062	13.2	0.1	0.12	12.2	0.0	1.5	1	0	0	1	1	1	0	Virus	coat	protein	(TMV	like)
ALIX_LYPXL_bnd	PF13949.1	gi|385803219|ref|YP_005839619.1|	-	3.9e-07	29.3	55.2	3.8e-06	26.0	14.9	2.4	2	0	0	2	2	2	2	ALIX	V-shaped	domain	binding	to	HIV
AAA_23	PF13476.1	gi|385803219|ref|YP_005839619.1|	-	5.4e-07	30.1	29.7	5.4e-07	30.1	20.6	4.6	1	1	1	2	2	1	1	AAA	domain
Seryl_tRNA_N	PF02403.17	gi|385803219|ref|YP_005839619.1|	-	1.8e-06	27.9	66.1	0.0092	15.9	8.6	5.5	2	2	3	5	5	5	3	Seryl-tRNA	synthetase	N-terminal	domain
Spc7	PF08317.6	gi|385803219|ref|YP_005839619.1|	-	2e-06	26.7	74.9	0.037	12.6	11.8	4.6	2	2	1	4	4	4	4	Spc7	kinetochore	protein
Reo_sigmaC	PF04582.7	gi|385803219|ref|YP_005839619.1|	-	5.2e-06	25.8	33.9	0.0024	17.0	6.7	4.3	1	1	3	4	4	4	3	Reovirus	sigma	C	capsid	protein
CENP-F_leu_zip	PF10473.4	gi|385803219|ref|YP_005839619.1|	-	8.6e-06	25.6	74.2	0.069	13.0	4.7	5.6	2	2	3	5	5	5	4	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF3584	PF12128.3	gi|385803219|ref|YP_005839619.1|	-	3.3e-05	21.4	62.3	0.00028	18.3	18.6	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF3584)
AAA_13	PF13166.1	gi|385803219|ref|YP_005839619.1|	-	0.00012	20.7	63.6	0.0011	17.5	20.7	3.1	1	1	0	2	2	2	1	AAA	domain
Myosin_tail_1	PF01576.14	gi|385803219|ref|YP_005839619.1|	-	0.00022	19.1	68.4	0.0021	15.8	18.1	2.7	2	1	0	2	2	2	2	Myosin	tail
WEMBL	PF05701.6	gi|385803219|ref|YP_005839619.1|	-	0.0012	17.4	54.3	0.026	13.0	15.8	2.4	2	0	0	2	2	2	2	Weak	chloroplast	movement	under	blue	light
Prefoldin	PF02996.12	gi|385803219|ref|YP_005839619.1|	-	0.0016	18.1	51.0	0.36	10.4	3.8	7.4	3	2	4	7	7	7	4	Prefoldin	subunit
APG6	PF04111.7	gi|385803219|ref|YP_005839619.1|	-	0.0017	17.4	20.4	0.0017	17.4	14.1	4.1	2	2	3	5	5	5	1	Autophagy	protein	Apg6
AAA_21	PF13304.1	gi|385803219|ref|YP_005839619.1|	-	0.0022	18.0	15.7	0.0028	17.6	2.9	2.4	2	0	0	2	2	2	1	AAA	domain
IncA	PF04156.9	gi|385803219|ref|YP_005839619.1|	-	0.0023	17.5	27.6	0.0023	17.5	19.1	4.4	2	2	1	3	3	3	2	IncA	protein
DUF1664	PF07889.7	gi|385803219|ref|YP_005839619.1|	-	0.0058	16.4	7.7	0.0058	16.4	5.3	6.1	2	2	5	7	7	7	1	Protein	of	unknown	function	(DUF1664)
AAA_27	PF13514.1	gi|385803219|ref|YP_005839619.1|	-	0.011	13.5	49.4	0.12	10.0	13.6	2.3	2	0	0	2	2	2	0	AAA	domain
Shugoshin_N	PF07558.6	gi|385803219|ref|YP_005839619.1|	-	0.015	15.0	0.9	0.015	15.0	0.6	4.6	4	1	1	5	5	3	0	Shugoshin	N-terminal	coiled-coil	region
Fib_alpha	PF08702.5	gi|385803219|ref|YP_005839619.1|	-	0.062	13.4	60.5	0.27	11.3	8.2	5.0	3	2	1	4	4	4	0	Fibrinogen	alpha/beta	chain	family
NPV_P10	PF05531.7	gi|385803219|ref|YP_005839619.1|	-	0.068	13.4	46.9	0.39	11.0	0.9	6.8	2	2	4	6	6	6	0	Nucleopolyhedrovirus	P10	protein
DUF342	PF03961.8	gi|385803219|ref|YP_005839619.1|	-	0.086	11.2	54.3	0.033	12.6	4.2	4.2	1	1	2	4	4	4	0	Protein	of	unknown	function	(DUF342)
Filament	PF00038.16	gi|385803219|ref|YP_005839619.1|	-	0.19	11.1	66.1	0.12	11.8	9.1	4.0	1	1	2	3	3	3	0	Intermediate	filament	protein
Atg14	PF10186.4	gi|385803219|ref|YP_005839619.1|	-	0.57	9.0	67.5	0.45	9.4	11.0	4.8	2	2	3	5	5	5	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
FlxA	PF14282.1	gi|385803219|ref|YP_005839619.1|	-	1	9.3	72.9	1.9	8.4	12.5	5.4	2	2	2	5	5	5	0	FlxA-like	protein
Phage_GP20	PF06810.6	gi|385803219|ref|YP_005839619.1|	-	1.2	8.5	63.0	0.14	11.5	8.6	5.8	2	2	3	5	5	5	0	Phage	minor	structural	protein	GP20
TBPIP	PF07106.8	gi|385803219|ref|YP_005839619.1|	-	1.3	8.5	68.1	3.9	7.0	6.3	5.0	2	2	2	4	4	4	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
LPP	PF04728.8	gi|385803219|ref|YP_005839619.1|	-	1.8	8.3	14.1	4.6	7.1	0.2	5.8	7	0	0	7	7	5	0	Lipoprotein	leucine-zipper
GAS	PF13851.1	gi|385803219|ref|YP_005839619.1|	-	2.5	7.2	68.0	0.19	10.9	11.5	4.6	3	2	2	5	5	4	0	Growth-arrest	specific	micro-tubule	binding
Flagellin_C	PF00700.16	gi|385803219|ref|YP_005839619.1|	-	3.2	7.9	29.0	3.1	8.0	1.0	5.9	4	2	1	5	5	5	0	Bacterial	flagellin	C-terminal	helical	region
Cast	PF10174.4	gi|385803219|ref|YP_005839619.1|	-	3.3	5.6	67.7	1.6	6.6	21.2	2.8	1	1	0	2	2	2	0	RIM-binding	protein	of	the	cytomatrix	active	zone
DivIC	PF04977.10	gi|385803219|ref|YP_005839619.1|	-	4.4	6.8	71.1	0.025	14.0	3.8	9.1	3	2	5	8	8	7	0	Septum	formation	initiator
HALZ	PF02183.13	gi|385803219|ref|YP_005839619.1|	-	4.8	6.9	21.5	1.6	8.5	0.5	5.1	4	1	1	5	5	5	0	Homeobox	associated	leucine	zipper
FliJ	PF02050.11	gi|385803219|ref|YP_005839619.1|	-	5.1	7.1	51.7	0.072	13.1	7.0	5.3	2	2	2	5	5	5	0	Flagellar	FliJ	protein
Laminin_II	PF06009.7	gi|385803219|ref|YP_005839619.1|	-	6	6.6	50.3	1.3	8.7	3.9	6.3	3	2	3	6	6	6	0	Laminin	Domain	II
DUF4140	PF13600.1	gi|385803219|ref|YP_005839619.1|	-	7.8	7.0	53.4	1.7	9.1	2.6	7.0	2	2	4	6	6	6	0	N-terminal	domain	of	unknown	function	(DUF4140)
FliD_N	PF02465.13	gi|385803219|ref|YP_005839619.1|	-	8.5	6.8	43.3	6.6	7.1	1.4	7.5	3	2	4	7	7	6	0	Flagellar	hook-associated	protein	2	N-terminus
ATG16	PF08614.6	gi|385803219|ref|YP_005839619.1|	-	8.5	6.1	68.4	0.73	9.6	9.3	4.8	2	2	2	4	4	4	0	Autophagy	protein	16	(ATG16)
BLOC1_2	PF10046.4	gi|385803219|ref|YP_005839619.1|	-	8.8	6.5	55.0	8.4	6.5	1.7	7.2	2	2	1	5	5	5	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
adh_short	PF00106.20	gi|385803220|ref|YP_005839620.1|	-	3.6e-17	62.7	6.2	7.5e-17	61.7	4.3	1.4	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|385803220|ref|YP_005839620.1|	-	5.2e-09	36.0	2.2	1e-08	35.0	1.5	1.4	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.16	gi|385803220|ref|YP_005839620.1|	-	1.2e-08	34.6	0.1	1.6e-08	34.3	0.1	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Eno-Rase_NADH_b	PF12242.3	gi|385803220|ref|YP_005839620.1|	-	0.0028	17.4	2.0	0.0039	16.9	0.5	1.9	2	0	0	2	2	2	1	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
CarboxypepD_reg	PF13620.1	gi|385803221|ref|YP_005839621.1|	-	6.2e-18	64.6	17.6	6.6e-10	38.9	0.9	4.4	4	0	0	4	4	4	4	Carboxypeptidase	regulatory-like	domain
DUF4480	PF13715.1	gi|385803221|ref|YP_005839621.1|	-	3e-11	43.2	8.0	0.00037	20.5	0.3	4.2	2	1	1	4	4	4	3	Domain	of	unknown	function	(DUF4480)
Big_1	PF02369.11	gi|385803221|ref|YP_005839621.1|	-	2.3e-06	27.4	7.1	0.054	13.4	0.2	3.7	3	0	0	3	3	3	2	Bacterial	Ig-like	domain	(group	1)
DUF2606	PF10794.4	gi|385803221|ref|YP_005839621.1|	-	4.4e-05	22.9	1.2	0.59	9.5	0.0	3.2	3	0	0	3	3	3	2	Protein	of	unknown	function	(DUF2606)
fn3_3	PF14686.1	gi|385803221|ref|YP_005839621.1|	-	0.00015	21.7	0.3	0.016	15.2	0.1	2.5	2	0	0	2	2	2	1	Polysaccharide	lyase	family	4,	domain	II
PEGA	PF08308.6	gi|385803221|ref|YP_005839621.1|	-	0.00032	20.4	7.4	0.024	14.3	0.1	3.1	3	1	0	3	3	3	2	PEGA	domain
DUF2012	PF09430.5	gi|385803221|ref|YP_005839621.1|	-	0.00039	20.2	0.2	0.0017	18.1	0.0	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2012)
DUF4198	PF10670.4	gi|385803221|ref|YP_005839621.1|	-	0.00074	19.5	0.3	0.56	10.1	0.0	3.1	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF4198)
Cna_B	PF05738.8	gi|385803221|ref|YP_005839621.1|	-	0.0013	18.4	0.3	0.012	15.3	0.1	2.5	2	0	0	2	2	2	1	Cna	protein	B-type	domain
EMP24_GP25L	PF01105.19	gi|385803221|ref|YP_005839621.1|	-	0.11	12.1	0.1	0.38	10.4	0.0	1.9	1	1	0	1	1	1	0	emp24/gp25L/p24	family/GOLD
zf-RING_3	PF14369.1	gi|385803223|ref|YP_005839623.1|	-	0.036	14.0	0.4	0.55	10.2	0.0	2.3	2	0	0	2	2	2	0	zinc-finger
Orthopox_A5L	PF06193.6	gi|385803223|ref|YP_005839623.1|	-	0.043	13.7	1.9	0.052	13.4	1.3	1.2	1	0	0	1	1	1	0	Orthopoxvirus	A5L	protein-like
DUF4428	PF14471.1	gi|385803223|ref|YP_005839623.1|	-	0.09	12.5	0.1	0.26	11.0	0.1	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4428)
Adeno_PX	PF05829.7	gi|385803224|ref|YP_005839624.1|	-	0.31	10.5	4.4	2.5	7.6	0.0	2.6	2	0	0	2	2	2	0	Adenovirus	late	L2	mu	core	protein	(Protein	X)
DUF1129	PF06570.6	gi|385803224|ref|YP_005839624.1|	-	1.9	7.7	6.4	0.51	9.6	0.3	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1129)
DUF626	PF04776.7	gi|385803225|ref|YP_005839625.1|	-	0.0085	16.4	0.1	0.011	16.0	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF626)
CBS	PF00571.23	gi|385803227|ref|YP_005839627.1|	-	1.3e-21	76.0	2.9	5.5e-12	45.2	0.1	3.0	2	1	0	2	2	2	2	CBS	domain
HypA	PF01155.14	gi|385803227|ref|YP_005839627.1|	-	0.0012	18.5	1.5	0.0035	17.0	1.1	1.9	1	1	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
Zn-ribbon_8	PF09723.5	gi|385803227|ref|YP_005839627.1|	-	0.0036	17.2	4.5	0.01	15.7	3.1	1.7	1	1	0	1	1	1	1	Zinc	ribbon	domain
DZR	PF12773.2	gi|385803227|ref|YP_005839627.1|	-	0.018	14.8	1.1	0.03	14.1	0.7	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
NOB1_Zn_bind	PF08772.6	gi|385803227|ref|YP_005839627.1|	-	0.018	14.8	0.1	0.038	13.8	0.1	1.5	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
DUF4371	PF14291.1	gi|385803227|ref|YP_005839627.1|	-	0.024	14.1	0.2	0.03	13.8	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4371)
Prok-RING_1	PF14446.1	gi|385803227|ref|YP_005839627.1|	-	0.029	14.0	0.4	0.049	13.3	0.3	1.3	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
zf-C2HC5	PF06221.8	gi|385803227|ref|YP_005839627.1|	-	0.041	13.6	0.2	0.067	12.9	0.2	1.3	1	0	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
UNC-79	PF14776.1	gi|385803227|ref|YP_005839627.1|	-	0.052	11.9	1.0	0.098	11.0	0.0	1.7	2	0	0	2	2	2	0	Cation-channel	complex	subunit	UNC-79
zf-RING_3	PF14369.1	gi|385803227|ref|YP_005839627.1|	-	0.29	11.1	4.2	0.71	9.9	2.9	1.8	1	1	0	1	1	1	0	zinc-finger
TFIIS_C	PF01096.13	gi|385803227|ref|YP_005839627.1|	-	0.37	10.4	2.3	2	8.1	0.0	2.4	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zinc_ribbon_2	PF13240.1	gi|385803227|ref|YP_005839627.1|	-	0.6	9.6	4.6	1	8.9	3.2	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|385803227|ref|YP_005839627.1|	-	3.3	7.0	5.8	14	5.0	0.8	2.2	1	1	1	2	2	2	0	TFIIB	zinc-binding
GATase_3	PF07685.9	gi|385803228|ref|YP_005839628.1|	-	4.2e-30	104.4	0.0	6.8e-30	103.7	0.0	1.3	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
CbiA	PF01656.18	gi|385803228|ref|YP_005839628.1|	-	7.6e-20	71.1	0.0	2e-19	69.8	0.0	1.7	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_26	PF13500.1	gi|385803228|ref|YP_005839628.1|	-	4e-11	42.9	0.0	1.2e-05	24.9	0.0	2.2	1	1	1	2	2	2	2	AAA	domain
Fer4_15	PF13459.1	gi|385803229|ref|YP_005839629.1|	-	1.2e-08	35.3	1.9	2e-08	34.6	1.3	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
CbiG_N	PF11760.3	gi|385803230|ref|YP_005839630.1|	-	2.9e-26	90.9	0.5	1.7e-25	88.5	0.0	2.4	2	0	0	2	2	2	1	Cobalamin	synthesis	G	N-terminal
CbiG_C	PF01890.11	gi|385803230|ref|YP_005839630.1|	-	2e-25	89.3	0.0	4.1e-25	88.3	0.0	1.5	1	0	0	1	1	1	1	Cobalamin	synthesis	G	C-terminus
TP_methylase	PF00590.15	gi|385803231|ref|YP_005839631.1|	-	6.2e-38	130.6	0.3	7.4e-38	130.3	0.2	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
RraB	PF06877.6	gi|385803231|ref|YP_005839631.1|	-	0.067	13.8	0.0	0.2	12.3	0.0	1.7	1	0	0	1	1	1	0	Regulator	of	ribonuclease	activity	B
TP_methylase	PF00590.15	gi|385803232|ref|YP_005839632.1|	-	2.9e-33	115.3	0.0	3.6e-33	115.0	0.0	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Glyoxalase_2	PF12681.2	gi|385803232|ref|YP_005839632.1|	-	0.11	13.1	0.0	0.23	12.0	0.0	1.7	1	1	0	1	1	1	0	Glyoxalase-like	domain
CopK	PF11525.3	gi|385803232|ref|YP_005839632.1|	-	0.16	11.6	0.0	0.3	10.7	0.0	1.4	1	0	0	1	1	1	0	Copper	resistance	protein	K
Methyltransf_18	PF12847.2	gi|385803233|ref|YP_005839633.1|	-	2.8e-10	40.7	0.0	5.1e-10	39.9	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|385803233|ref|YP_005839633.1|	-	1.3e-06	27.9	0.0	3.5e-06	26.4	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	small	domain
PCMT	PF01135.14	gi|385803233|ref|YP_005839633.1|	-	7.6e-06	25.5	0.0	1.2e-05	24.9	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_31	PF13847.1	gi|385803233|ref|YP_005839633.1|	-	1e-05	25.1	0.0	1.2e-05	24.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|385803233|ref|YP_005839633.1|	-	2.2e-05	24.4	0.1	3.5e-05	23.8	0.1	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.8	gi|385803233|ref|YP_005839633.1|	-	3.1e-05	23.2	0.1	4.9e-05	22.6	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
RrnaAD	PF00398.15	gi|385803233|ref|YP_005839633.1|	-	0.00049	19.1	0.1	0.00072	18.6	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
CMAS	PF02353.15	gi|385803233|ref|YP_005839633.1|	-	0.00057	19.0	0.0	0.00084	18.4	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Cons_hypoth95	PF03602.10	gi|385803233|ref|YP_005839633.1|	-	0.00059	19.2	0.0	0.00085	18.7	0.0	1.2	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
DOT1	PF08123.8	gi|385803233|ref|YP_005839633.1|	-	0.0014	17.9	0.0	0.0024	17.2	0.0	1.4	1	0	0	1	1	1	1	Histone	methylation	protein	DOT1
UPF0020	PF01170.13	gi|385803233|ref|YP_005839633.1|	-	0.012	15.2	0.0	0.017	14.6	0.0	1.3	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Methyltransf_25	PF13649.1	gi|385803233|ref|YP_005839633.1|	-	0.022	15.1	0.0	0.029	14.7	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Met_10	PF02475.11	gi|385803233|ref|YP_005839633.1|	-	0.066	12.7	0.3	0.11	12.0	0.2	1.3	1	1	0	1	1	1	0	Met-10+	like-protein
Methyltransf_23	PF13489.1	gi|385803233|ref|YP_005839633.1|	-	0.089	12.5	0.0	0.11	12.1	0.0	1.2	1	1	0	1	1	1	0	Methyltransferase	domain
GCD14	PF08704.5	gi|385803233|ref|YP_005839633.1|	-	0.09	12.2	0.0	0.14	11.6	0.0	1.4	1	1	0	1	1	1	0	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_12	PF08242.7	gi|385803233|ref|YP_005839633.1|	-	0.12	12.8	0.0	0.18	12.3	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
CbiM	PF01891.11	gi|385803234|ref|YP_005839634.1|	-	2.3e-49	167.8	19.5	2.5e-49	167.6	13.5	1.0	1	0	0	1	1	1	1	Cobalt	uptake	substrate-specific	transmembrane	region
CbiN	PF02553.10	gi|385803235|ref|YP_005839635.1|	-	5.1e-08	32.7	0.0	7.2e-08	32.3	0.0	1.2	1	0	0	1	1	1	1	Cobalt	transport	protein	component	CbiN
CbiQ	PF02361.11	gi|385803236|ref|YP_005839636.1|	-	2.1e-32	112.4	15.1	2.1e-32	112.4	10.5	1.4	2	0	0	2	2	2	1	Cobalt	transport	protein
DUF997	PF06196.7	gi|385803236|ref|YP_005839636.1|	-	0.25	10.8	2.0	0.23	11.0	0.3	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF997)
ABC_tran	PF00005.22	gi|385803237|ref|YP_005839637.1|	-	3.9e-29	101.7	0.0	4.9e-29	101.3	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385803237|ref|YP_005839637.1|	-	2.2e-10	40.9	0.0	0.00023	21.2	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|385803237|ref|YP_005839637.1|	-	3.2e-07	29.7	0.0	6.9e-05	22.1	0.0	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|385803237|ref|YP_005839637.1|	-	7.1e-05	22.2	0.1	0.00012	21.4	0.1	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.1	gi|385803237|ref|YP_005839637.1|	-	0.00013	21.2	0.0	0.37	9.8	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
DUF258	PF03193.11	gi|385803237|ref|YP_005839637.1|	-	0.0017	17.5	0.0	0.0024	17.0	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_23	PF13476.1	gi|385803237|ref|YP_005839637.1|	-	0.0025	18.1	0.0	0.0032	17.8	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|385803237|ref|YP_005839637.1|	-	0.0074	16.2	0.1	0.016	15.2	0.0	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
Miro	PF08477.8	gi|385803237|ref|YP_005839637.1|	-	0.012	16.1	0.0	0.02	15.4	0.0	1.3	1	0	0	1	1	1	0	Miro-like	protein
AAA_25	PF13481.1	gi|385803237|ref|YP_005839637.1|	-	0.012	15.0	0.0	0.031	13.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|385803237|ref|YP_005839637.1|	-	0.029	14.5	0.0	0.038	14.1	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|385803237|ref|YP_005839637.1|	-	0.043	13.2	0.0	1.7	8.0	0.0	2.1	2	0	0	2	2	2	0	AAA-like	domain
Zeta_toxin	PF06414.7	gi|385803237|ref|YP_005839637.1|	-	0.061	12.4	0.0	0.096	11.7	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
AAA_13	PF13166.1	gi|385803237|ref|YP_005839637.1|	-	0.062	11.7	0.0	0.27	9.6	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
cobW	PF02492.14	gi|385803237|ref|YP_005839637.1|	-	0.095	12.1	0.1	0.17	11.3	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
MutS_V	PF00488.16	gi|385803237|ref|YP_005839637.1|	-	0.097	12.0	0.0	0.22	10.8	0.0	1.5	2	0	0	2	2	2	0	MutS	domain	V
Arch_ATPase	PF01637.13	gi|385803237|ref|YP_005839637.1|	-	0.11	12.1	0.0	0.15	11.7	0.0	1.2	1	0	0	1	1	1	0	Archaeal	ATPase
AAA_30	PF13604.1	gi|385803237|ref|YP_005839637.1|	-	0.14	11.6	0.0	0.24	10.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
RHH_1	PF01402.16	gi|385803238|ref|YP_005839638.1|	-	0.028	14.3	0.1	0.038	13.8	0.0	1.2	1	0	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
WGG	PF10273.4	gi|385803238|ref|YP_005839638.1|	-	0.35	10.9	1.7	0.7	10.0	1.1	1.6	1	1	0	1	1	1	0	Pre-rRNA-processing	protein	TSR2
adh_short_C2	PF13561.1	gi|385803239|ref|YP_005839639.1|	-	2.4e-21	76.6	0.0	2.8e-21	76.3	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.20	gi|385803239|ref|YP_005839639.1|	-	4e-21	75.6	0.8	4.9e-21	75.3	0.5	1.3	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|385803239|ref|YP_005839639.1|	-	3.4e-09	36.6	0.2	5.1e-09	36.0	0.1	1.3	1	0	0	1	1	1	1	KR	domain
MFS_1	PF07690.11	gi|385803240|ref|YP_005839640.1|	-	1.4e-40	139.0	40.5	1.4e-40	139.0	28.0	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
LacY_symp	PF01306.14	gi|385803240|ref|YP_005839640.1|	-	0.00026	19.6	1.3	0.00026	19.6	0.9	2.0	2	0	0	2	2	2	1	LacY	proton/sugar	symporter
MFS_2	PF13347.1	gi|385803240|ref|YP_005839640.1|	-	0.0005	18.5	24.7	0.001	17.5	17.1	1.5	1	0	0	1	1	1	1	MFS/sugar	transport	protein
DUF4131	PF13567.1	gi|385803240|ref|YP_005839640.1|	-	0.0074	15.7	1.8	0.0074	15.7	1.2	3.4	2	1	0	3	3	3	1	Domain	of	unknown	function	(DUF4131)
DUF1228	PF06779.9	gi|385803240|ref|YP_005839640.1|	-	0.025	14.5	0.5	0.025	14.5	0.4	3.4	4	1	0	4	4	4	0	Protein	of	unknown	function	(DUF1228)
YwiC	PF14256.1	gi|385803240|ref|YP_005839640.1|	-	8.2	6.5	34.1	1.3	9.1	1.5	4.8	2	1	1	5	5	5	0	YwiC-like	protein
DDE_Tnp_1	PF01609.16	gi|385803241|ref|YP_005839641.1|	-	2.3e-19	69.7	0.0	3.3e-19	69.2	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_4	PF13701.1	gi|385803241|ref|YP_005839641.1|	-	0.0045	15.2	0.0	0.0068	14.6	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain	group	1
DUF2015	PF09435.5	gi|385803241|ref|YP_005839641.1|	-	0.031	14.0	0.1	0.078	12.7	0.1	1.6	1	0	0	1	1	1	0	Fungal	protein	of	unknown	function	(DUF2015)
DHFR_1	PF00186.14	gi|385803242|ref|YP_005839642.1|	-	2.2e-38	131.3	0.0	2.4e-38	131.2	0.0	1.0	1	0	0	1	1	1	1	Dihydrofolate	reductase
RibD_C	PF01872.12	gi|385803242|ref|YP_005839642.1|	-	0.051	13.1	0.0	0.078	12.5	0.0	1.3	1	1	0	1	1	1	0	RibD	C-terminal	domain
PMSR	PF01625.16	gi|385803243|ref|YP_005839643.1|	-	7.6e-66	220.8	1.1	9.1e-66	220.5	0.8	1.0	1	0	0	1	1	1	1	Peptide	methionine	sulfoxide	reductase
Aldedh	PF00171.17	gi|385803244|ref|YP_005839644.1|	-	2.1e-26	92.2	1.5	1.7e-20	72.8	0.2	2.1	2	0	0	2	2	2	2	Aldehyde	dehydrogenase	family
AA_kinase	PF00696.23	gi|385803245|ref|YP_005839645.1|	-	2.3e-42	145.1	2.8	2.9e-42	144.8	2.0	1.1	1	0	0	1	1	1	1	Amino	acid	kinase	family
Lipase_GDSL_2	PF13472.1	gi|385803245|ref|YP_005839645.1|	-	0.084	13.0	0.1	0.14	12.2	0.0	1.4	1	0	0	1	1	1	0	GDSL-like	Lipase/Acylhydrolase	family
Glyco_hydro_3_C	PF01915.17	gi|385803245|ref|YP_005839645.1|	-	0.6	9.5	4.5	0.27	10.7	1.1	1.8	2	0	0	2	2	2	0	Glycosyl	hydrolase	family	3	C-terminal	domain
P5CR_dimer	PF14748.1	gi|385803246|ref|YP_005839646.1|	-	2.6e-34	117.4	0.4	2.6e-34	117.4	0.3	1.6	2	0	0	2	2	2	1	Pyrroline-5-carboxylate	reductase	dimerisation
F420_oxidored	PF03807.12	gi|385803246|ref|YP_005839646.1|	-	5.9e-09	36.2	0.1	2.3e-08	34.3	0.0	2.1	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.10	gi|385803246|ref|YP_005839646.1|	-	8.4e-05	22.4	0.1	0.00025	20.9	0.0	1.8	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
3HCDH_N	PF02737.13	gi|385803246|ref|YP_005839646.1|	-	0.0046	16.6	0.0	0.011	15.3	0.0	1.7	1	1	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|385803246|ref|YP_005839646.1|	-	0.0075	15.4	0.0	0.015	14.4	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.13	gi|385803246|ref|YP_005839646.1|	-	0.012	15.6	0.2	0.075	13.0	0.1	2.5	1	1	1	2	2	2	0	TrkA-N	domain
PDH	PF02153.12	gi|385803246|ref|YP_005839646.1|	-	0.053	12.3	0.8	0.11	11.3	0.2	1.7	2	0	0	2	2	2	0	Prephenate	dehydrogenase
NAD_Gly3P_dh_N	PF01210.18	gi|385803246|ref|YP_005839646.1|	-	0.076	12.7	2.0	0.83	9.3	0.1	2.4	1	1	1	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
ThiF	PF00899.16	gi|385803246|ref|YP_005839646.1|	-	0.21	11.3	3.1	0.46	10.3	1.4	2.2	1	1	1	2	2	2	0	ThiF	family
FmdA_AmdA	PF03069.10	gi|385803247|ref|YP_005839647.1|	-	8.9e-52	175.9	0.2	5.5e-47	160.2	0.0	2.0	1	1	1	2	2	2	2	Acetamidase/Formamidase	family
UPF0547	PF10571.4	gi|385803247|ref|YP_005839647.1|	-	0.0023	17.6	2.7	0.0085	15.7	1.9	1.8	1	1	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
DZR	PF12773.2	gi|385803247|ref|YP_005839647.1|	-	0.011	15.5	0.3	0.02	14.6	0.2	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
Ribosomal_S27e	PF01667.12	gi|385803247|ref|YP_005839647.1|	-	0.025	14.1	0.0	0.047	13.2	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	S27
Zn-ribbon_8	PF09723.5	gi|385803247|ref|YP_005839647.1|	-	0.043	13.7	0.3	0.15	12.0	0.3	1.8	2	0	0	2	2	2	0	Zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|385803247|ref|YP_005839647.1|	-	0.1	11.9	1.0	0.29	10.4	0.7	1.8	1	0	0	1	1	1	0	TFIIB	zinc-binding
DUF4379	PF14311.1	gi|385803247|ref|YP_005839647.1|	-	0.2	11.5	1.7	0.55	10.0	1.2	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4379)
DNA_RNApol_7kD	PF03604.8	gi|385803247|ref|YP_005839647.1|	-	0.22	11.0	3.5	1.3	8.5	2.4	2.1	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zinc_ribbon_2	PF13240.1	gi|385803247|ref|YP_005839647.1|	-	0.25	10.8	2.0	2.6	7.6	1.3	2.3	1	1	1	2	2	2	0	zinc-ribbon	domain
DNA_ligase_ZBD	PF03119.11	gi|385803247|ref|YP_005839647.1|	-	0.4	10.4	3.3	9.9	5.9	0.2	3.0	3	0	0	3	3	3	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-ribbon_3	PF13248.1	gi|385803247|ref|YP_005839647.1|	-	2.3	7.5	5.7	32	3.9	4.0	2.3	1	1	1	2	2	2	0	zinc-ribbon	domain
ThiS	PF02597.15	gi|385803248|ref|YP_005839648.1|	-	2e-08	34.5	0.0	6e-08	32.9	0.0	1.7	2	0	0	2	2	2	1	ThiS	family
Urm1	PF09138.6	gi|385803248|ref|YP_005839648.1|	-	0.0059	16.6	0.0	0.0069	16.4	0.0	1.2	1	0	0	1	1	1	1	Urm1	(Ubiquitin	related	modifier)
MatE	PF01554.13	gi|385803250|ref|YP_005839650.1|	-	5.9e-44	149.5	35.7	2.3e-22	79.3	9.1	2.4	2	0	0	2	2	2	2	MatE
Polysacc_synt_C	PF14667.1	gi|385803250|ref|YP_005839650.1|	-	5e-09	36.1	6.2	5e-09	36.1	4.3	4.6	3	2	0	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
EcsB	PF05975.7	gi|385803250|ref|YP_005839650.1|	-	0.54	8.6	4.5	0.15	10.4	0.2	2.0	2	0	0	2	2	2	0	Bacterial	ABC	transporter	protein	EcsB
DEAD	PF00270.24	gi|385803251|ref|YP_005839651.1|	-	1.9e-18	66.5	0.0	3.4e-18	65.7	0.0	1.4	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
DUF1998	PF09369.5	gi|385803251|ref|YP_005839651.1|	-	4.5e-14	52.7	0.0	1.3e-13	51.2	0.0	1.9	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1998)
Helicase_C	PF00271.26	gi|385803251|ref|YP_005839651.1|	-	4.3e-11	42.5	0.0	2.4e-10	40.1	0.0	2.2	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|385803251|ref|YP_005839651.1|	-	3.3e-07	30.3	0.0	7.1e-07	29.2	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
RNase_H_2	PF13482.1	gi|385803252|ref|YP_005839652.1|	-	2.5e-34	118.4	0.0	3.3e-34	118.0	0.0	1.2	1	0	0	1	1	1	1	RNase_H	superfamily
HHH_5	PF14520.1	gi|385803252|ref|YP_005839652.1|	-	8.4e-08	32.2	0.0	2.1e-07	31.0	0.0	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
HHH_2	PF12826.2	gi|385803252|ref|YP_005839652.1|	-	0.00029	20.6	0.0	0.00063	19.5	0.0	1.4	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
DNA_pol_B_exo2	PF10108.4	gi|385803252|ref|YP_005839652.1|	-	0.012	15.1	0.0	0.053	13.0	0.0	2.0	1	1	0	1	1	1	0	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
HHH	PF00633.18	gi|385803252|ref|YP_005839652.1|	-	0.013	15.1	0.0	0.45	10.3	0.0	3.2	3	0	0	3	3	3	0	Helix-hairpin-helix	motif
Myosin_tail_1	PF01576.14	gi|385803254|ref|YP_005839654.1|	-	0.0099	13.6	1.4	0.015	13.0	0.9	1.2	1	0	0	1	1	1	1	Myosin	tail
DUF1949	PF09186.6	gi|385803254|ref|YP_005839654.1|	-	0.055	13.0	0.2	0.15	11.6	0.1	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1949)
ASC	PF00858.19	gi|385803254|ref|YP_005839654.1|	-	0.12	10.9	0.0	0.17	10.4	0.0	1.1	1	0	0	1	1	1	0	Amiloride-sensitive	sodium	channel
Trypsin_2	PF13365.1	gi|385803255|ref|YP_005839655.1|	-	6.7e-17	61.5	0.5	1.2e-16	60.7	0.3	1.5	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
PDZ_2	PF13180.1	gi|385803255|ref|YP_005839655.1|	-	7.4e-16	57.8	0.3	1.9e-15	56.5	0.2	1.7	1	0	0	1	1	1	1	PDZ	domain
Trypsin	PF00089.21	gi|385803255|ref|YP_005839655.1|	-	3e-12	46.6	0.2	7.1e-12	45.3	0.1	1.6	1	1	0	1	1	1	1	Trypsin
DUF533	PF04391.7	gi|385803255|ref|YP_005839655.1|	-	0.02	14.2	0.3	0.47	9.8	0.2	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF533)
Tricorn_PDZ	PF14685.1	gi|385803255|ref|YP_005839655.1|	-	0.079	12.7	0.2	0.4	10.4	0.1	2.2	2	0	0	2	2	2	0	Tricorn	protease	PDZ	domain
Peptidase_S3	PF00944.14	gi|385803255|ref|YP_005839655.1|	-	0.1	11.9	0.3	0.2	11.0	0.2	1.4	1	0	0	1	1	1	0	Alphavirus	core	protein
GCV_T	PF01571.16	gi|385803256|ref|YP_005839656.1|	-	2.6e-40	138.0	0.0	4.2e-40	137.3	0.0	1.3	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
GCV_T_C	PF08669.6	gi|385803256|ref|YP_005839656.1|	-	2.4e-08	33.8	0.0	4.6e-08	32.9	0.0	1.5	1	0	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
UNC-50	PF05216.8	gi|385803257|ref|YP_005839657.1|	-	0.013	14.7	2.1	0.014	14.6	1.5	1.0	1	0	0	1	1	1	0	UNC-50	family
DUF1469	PF07332.6	gi|385803257|ref|YP_005839657.1|	-	0.068	12.9	3.8	0.082	12.6	2.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
Polysacc_synt_3	PF13440.1	gi|385803257|ref|YP_005839657.1|	-	0.088	12.2	6.9	0.15	11.5	4.9	1.3	1	1	0	1	1	1	0	Polysaccharide	biosynthesis	protein
FUSC_2	PF13515.1	gi|385803257|ref|YP_005839657.1|	-	0.13	12.1	7.0	0.17	11.7	4.8	1.2	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein-like
DUF4231	PF14015.1	gi|385803257|ref|YP_005839657.1|	-	6.8	6.7	7.1	8.7	6.3	4.9	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4231)
HTH_10	PF04967.7	gi|385803258|ref|YP_005839658.1|	-	1.1e-16	60.1	0.0	1.7e-16	59.5	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.11	gi|385803258|ref|YP_005839658.1|	-	7.1e-05	22.0	0.0	0.00013	21.1	0.0	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
MarR_2	PF12802.2	gi|385803258|ref|YP_005839658.1|	-	0.0046	16.5	0.0	0.0094	15.5	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.1	gi|385803258|ref|YP_005839658.1|	-	0.037	13.5	0.2	0.071	12.6	0.1	1.4	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
UPF0122	PF04297.9	gi|385803258|ref|YP_005839658.1|	-	0.046	13.7	0.0	0.099	12.6	0.0	1.5	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
DDE_Tnp_1_4	PF13701.1	gi|385803258|ref|YP_005839658.1|	-	0.071	11.2	0.0	0.087	10.9	0.0	1.1	1	0	0	1	1	1	0	Transposase	DDE	domain	group	1
HTH_24	PF13412.1	gi|385803258|ref|YP_005839658.1|	-	0.071	12.5	0.0	0.15	11.5	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Sigma70_r4_2	PF08281.7	gi|385803258|ref|YP_005839658.1|	-	0.099	12.1	0.0	0.3	10.5	0.0	1.8	2	0	0	2	2	2	0	Sigma-70,	region	4
Aminotran_5	PF00266.14	gi|385803259|ref|YP_005839659.1|	-	7.5e-59	199.3	0.0	8.8e-59	199.1	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
HTH_10	PF04967.7	gi|385803260|ref|YP_005839660.1|	-	4.6e-19	67.7	0.1	7.8e-19	67.0	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.11	gi|385803260|ref|YP_005839660.1|	-	0.049	12.9	0.0	0.12	11.7	0.0	1.7	1	0	0	1	1	1	0	Sigma-70,	region	4
DUF2493	PF10686.4	gi|385803260|ref|YP_005839660.1|	-	0.094	12.2	0.0	0.17	11.4	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2493)
BCD	PF15461.1	gi|385803261|ref|YP_005839661.1|	-	3.4e-67	226.5	20.4	4.8e-67	226.1	14.1	1.2	1	0	0	1	1	1	1	Beta-carotene	15,15'-dioxygenase
CSD	PF00313.17	gi|385803263|ref|YP_005839663.1|	-	7.7e-21	73.6	0.2	8.5e-21	73.5	0.1	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
S1-like	PF14444.1	gi|385803263|ref|YP_005839663.1|	-	0.01	15.5	0.9	0.015	15.0	0.6	1.3	1	1	0	1	1	1	0	S1-like
CusF_Ec	PF11604.3	gi|385803263|ref|YP_005839663.1|	-	0.012	15.3	0.0	0.015	15.1	0.0	1.2	1	0	0	1	1	1	0	Copper	binding	periplasmic	protein	CusF
OB_RNB	PF08206.6	gi|385803263|ref|YP_005839663.1|	-	0.03	13.8	1.2	0.044	13.2	0.9	1.3	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
TFIIB	PF00382.14	gi|385803264|ref|YP_005839664.1|	-	4.1e-45	151.4	1.1	7.3e-23	80.1	0.1	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|385803264|ref|YP_005839664.1|	-	5e-18	64.1	1.4	8.1e-18	63.4	1.0	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
A2L_zn_ribbon	PF08792.5	gi|385803264|ref|YP_005839664.1|	-	0.0034	16.8	2.8	0.03	13.7	1.9	2.2	1	1	1	2	2	2	1	A2L	zinc	ribbon	domain
HTH_23	PF13384.1	gi|385803264|ref|YP_005839664.1|	-	0.01	15.4	0.3	0.59	9.8	0.0	3.3	3	0	0	3	3	3	0	Homeodomain-like	domain
Sigma70_r4	PF04545.11	gi|385803264|ref|YP_005839664.1|	-	0.014	14.7	0.8	0.3	10.4	0.0	3.3	3	1	0	3	3	3	0	Sigma-70,	region	4
Ribosomal_S27e	PF01667.12	gi|385803264|ref|YP_005839664.1|	-	0.02	14.4	0.2	0.04	13.4	0.1	1.4	1	0	0	1	1	1	0	Ribosomal	protein	S27
RRN7	PF11781.3	gi|385803264|ref|YP_005839664.1|	-	0.061	12.8	0.5	0.11	11.9	0.3	1.5	1	0	0	1	1	1	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
Trm112p	PF03966.11	gi|385803264|ref|YP_005839664.1|	-	0.071	13.4	1.2	0.34	11.3	0.8	2.2	1	1	0	1	1	1	0	Trm112p-like	protein
Cyclin_N	PF00134.18	gi|385803264|ref|YP_005839664.1|	-	0.078	12.5	0.0	0.28	10.7	0.0	1.9	2	0	0	2	2	2	0	Cyclin,	N-terminal	domain
OrfB_Zn_ribbon	PF07282.6	gi|385803264|ref|YP_005839664.1|	-	0.082	12.5	0.5	0.24	11.0	0.4	1.8	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Cyclin_C	PF02984.14	gi|385803264|ref|YP_005839664.1|	-	0.085	12.7	0.0	0.5	10.3	0.0	2.0	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
Elf1	PF05129.8	gi|385803264|ref|YP_005839664.1|	-	0.1	12.3	0.2	0.26	11.0	0.1	1.6	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
Lar_restr_allev	PF14354.1	gi|385803264|ref|YP_005839664.1|	-	0.11	12.8	0.4	0.27	11.5	0.3	1.6	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf-RING_3	PF14369.1	gi|385803264|ref|YP_005839664.1|	-	1.3	9.1	3.9	1.3	9.0	0.3	2.3	1	1	1	2	2	2	0	zinc-finger
Zn-ribbon_8	PF09723.5	gi|385803264|ref|YP_005839664.1|	-	1.6	8.7	3.8	6.7	6.7	0.6	2.5	1	1	0	2	2	2	0	Zinc	ribbon	domain
Methyltransf_26	PF13659.1	gi|385803265|ref|YP_005839665.1|	-	1.6e-14	53.9	0.0	2.1e-14	53.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|385803265|ref|YP_005839665.1|	-	1.4e-12	47.5	0.0	2.2e-12	46.9	0.0	1.2	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
MTS	PF05175.9	gi|385803265|ref|YP_005839665.1|	-	3e-11	42.9	0.1	5e-11	42.2	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.8	gi|385803265|ref|YP_005839665.1|	-	2.2e-10	40.1	0.2	3.2e-10	39.6	0.2	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_31	PF13847.1	gi|385803265|ref|YP_005839665.1|	-	1.6e-08	34.2	0.0	4.4e-08	32.8	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|385803265|ref|YP_005839665.1|	-	6.8e-08	32.7	0.0	1.4e-07	31.7	0.0	1.6	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|385803265|ref|YP_005839665.1|	-	2.3e-07	31.3	0.0	3.4e-07	30.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.10	gi|385803265|ref|YP_005839665.1|	-	2.8e-07	30.1	0.0	3.7e-07	29.7	0.0	1.1	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_11	PF08241.7	gi|385803265|ref|YP_005839665.1|	-	4.9e-06	26.9	0.0	1e-05	25.9	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.5	gi|385803265|ref|YP_005839665.1|	-	1.5e-05	24.6	0.0	2.1e-05	24.1	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Ubie_methyltran	PF01209.13	gi|385803265|ref|YP_005839665.1|	-	3.2e-05	23.1	0.0	5.1e-05	22.5	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
RrnaAD	PF00398.15	gi|385803265|ref|YP_005839665.1|	-	0.00013	21.0	0.0	0.00019	20.5	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_3	PF01596.12	gi|385803265|ref|YP_005839665.1|	-	0.00025	20.1	0.1	0.00037	19.5	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase
Methyltransf_32	PF13679.1	gi|385803265|ref|YP_005839665.1|	-	0.00071	19.2	0.0	0.001	18.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
N6_Mtase	PF02384.11	gi|385803265|ref|YP_005839665.1|	-	0.0019	17.3	0.0	0.0027	16.8	0.0	1.2	1	0	0	1	1	1	1	N-6	DNA	Methylase
Methyltransf_23	PF13489.1	gi|385803265|ref|YP_005839665.1|	-	0.0033	17.1	0.0	0.0059	16.3	0.0	1.3	1	1	0	1	1	1	1	Methyltransferase	domain
Met_10	PF02475.11	gi|385803265|ref|YP_005839665.1|	-	0.028	13.9	0.0	0.038	13.5	0.0	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
Methyltransf_12	PF08242.7	gi|385803265|ref|YP_005839665.1|	-	0.053	13.9	0.0	0.11	12.9	0.0	1.6	1	0	0	1	1	1	0	Methyltransferase	domain
DOT1	PF08123.8	gi|385803265|ref|YP_005839665.1|	-	0.075	12.3	0.0	0.12	11.6	0.0	1.4	1	0	0	1	1	1	0	Histone	methylation	protein	DOT1
Methyltransf_4	PF02390.12	gi|385803265|ref|YP_005839665.1|	-	0.099	11.6	0.0	0.1	11.6	0.0	1.2	1	0	0	1	1	1	0	Putative	methyltransferase
Rhomboid	PF01694.17	gi|385803266|ref|YP_005839666.1|	-	0.00065	19.7	17.3	0.00065	19.7	12.0	3.2	2	1	0	2	2	2	1	Rhomboid	family
UPF0058	PF01893.11	gi|385803267|ref|YP_005839667.1|	-	9.7e-35	118.5	0.6	1.1e-34	118.3	0.4	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0058
Chorismate_bind	PF00425.13	gi|385803269|ref|YP_005839669.1|	-	4.4e-71	239.2	0.0	6e-71	238.7	0.0	1.2	1	0	0	1	1	1	1	chorismate	binding	enzyme
ACP	PF06857.6	gi|385803269|ref|YP_005839669.1|	-	0.079	12.8	0.0	0.21	11.4	0.0	1.8	1	0	0	1	1	1	0	Malonate	decarboxylase	delta	subunit	(MdcD)
TPP_enzyme_N	PF02776.13	gi|385803270|ref|YP_005839670.1|	-	3.6e-31	107.9	0.1	1.3e-30	106.1	0.0	1.9	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.16	gi|385803270|ref|YP_005839670.1|	-	6.1e-08	32.3	0.0	1.7e-07	30.9	0.0	1.7	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.17	gi|385803270|ref|YP_005839670.1|	-	0.00071	19.3	0.0	0.0014	18.3	0.0	1.5	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
ECH	PF00378.15	gi|385803271|ref|YP_005839671.1|	-	3.4e-43	147.5	0.0	2.1e-42	144.9	0.0	1.8	1	1	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
UbiA	PF01040.13	gi|385803272|ref|YP_005839672.1|	-	1.2e-36	126.3	25.5	1.4e-36	126.0	17.6	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
PRA1	PF03208.14	gi|385803272|ref|YP_005839672.1|	-	0.56	9.5	7.4	0.15	11.3	1.0	2.5	2	1	0	2	2	2	0	PRA1	family	protein
MR_MLE	PF01188.16	gi|385803273|ref|YP_005839673.1|	-	1.3e-16	60.8	0.5	5.7e-16	58.8	0.2	2.1	2	0	0	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	C-terminal	domain
MR_MLE_C	PF13378.1	gi|385803273|ref|YP_005839673.1|	-	4e-14	52.5	0.5	4e-14	52.5	0.3	2.2	3	0	0	3	3	3	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.11	gi|385803273|ref|YP_005839673.1|	-	3.9e-05	23.6	0.0	9.2e-05	22.4	0.0	1.7	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
Jiraiya	PF15038.1	gi|385803274|ref|YP_005839674.1|	-	0.094	12.1	0.4	0.098	12.0	0.2	1.0	1	0	0	1	1	1	0	Jiraiya
PSII_Ycf12	PF05969.6	gi|385803274|ref|YP_005839674.1|	-	0.79	9.3	4.9	0.94	9.1	3.4	1.1	1	0	0	1	1	1	0	Photosystem	II	complex	subunit	Ycf12
PyrI	PF01948.13	gi|385803276|ref|YP_005839676.1|	-	2.8e-36	123.4	0.9	3.8e-36	123.0	0.6	1.2	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	allosteric	domain
PyrI_C	PF02748.10	gi|385803276|ref|YP_005839676.1|	-	7.3e-17	60.5	0.6	1.2e-16	59.8	0.4	1.4	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
OTCace_N	PF02729.16	gi|385803277|ref|YP_005839677.1|	-	7.6e-46	155.2	0.0	2e-45	153.9	0.0	1.6	2	0	0	2	2	2	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.19	gi|385803277|ref|YP_005839677.1|	-	3e-36	124.6	0.0	4.2e-36	124.2	0.0	1.2	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
ELFV_dehydrog	PF00208.16	gi|385803278|ref|YP_005839678.1|	-	1.8e-71	240.5	0.4	2.2e-71	240.2	0.3	1.1	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.13	gi|385803278|ref|YP_005839678.1|	-	5e-50	168.4	0.0	7.9e-50	167.8	0.0	1.3	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.14	gi|385803278|ref|YP_005839678.1|	-	0.0042	16.2	0.1	0.0088	15.2	0.0	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.16	gi|385803278|ref|YP_005839678.1|	-	0.029	13.9	0.1	0.055	13.0	0.0	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
IlvN	PF07991.7	gi|385803278|ref|YP_005839678.1|	-	0.043	13.1	0.1	0.073	12.4	0.1	1.4	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
Malic_M	PF03949.10	gi|385803278|ref|YP_005839678.1|	-	0.052	13.0	0.2	0.076	12.5	0.1	1.3	1	0	0	1	1	1	0	Malic	enzyme,	NAD	binding	domain
FBPase	PF00316.15	gi|385803279|ref|YP_005839679.1|	-	1.6e-61	207.9	0.0	1.9e-61	207.6	0.0	1.0	1	0	0	1	1	1	1	Fructose-1-6-bisphosphatase
Inositol_P	PF00459.20	gi|385803279|ref|YP_005839679.1|	-	0.0059	15.9	0.0	0.012	14.9	0.0	1.4	1	1	0	1	1	1	1	Inositol	monophosphatase	family
HRDC	PF00570.18	gi|385803280|ref|YP_005839680.1|	-	0.0026	17.4	0.1	0.61	9.8	0.0	2.3	2	0	0	2	2	2	1	HRDC	domain
Rab5-bind	PF09311.6	gi|385803280|ref|YP_005839680.1|	-	0.0026	17.6	6.5	0.0031	17.4	4.5	1.0	1	0	0	1	1	1	1	Rabaptin-like	protein
HR1	PF02185.11	gi|385803280|ref|YP_005839680.1|	-	0.0028	17.3	0.2	0.0069	16.1	0.1	1.7	1	0	0	1	1	1	1	Hr1	repeat
DegS	PF05384.6	gi|385803280|ref|YP_005839680.1|	-	0.0041	16.3	2.1	0.005	16.0	1.5	1.2	1	0	0	1	1	1	1	Sensor	protein	DegS
Filament	PF00038.16	gi|385803280|ref|YP_005839680.1|	-	0.0045	16.4	2.9	0.0052	16.3	2.0	1.1	1	0	0	1	1	1	1	Intermediate	filament	protein
MCPsignal	PF00015.16	gi|385803280|ref|YP_005839680.1|	-	0.0081	15.7	5.3	0.0095	15.5	3.7	1.2	1	1	0	1	1	1	1	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Cep57_CLD_2	PF14197.1	gi|385803280|ref|YP_005839680.1|	-	0.017	15.0	0.9	0.026	14.4	0.6	1.3	1	0	0	1	1	1	0	Centrosome	localisation	domain	of	PPC89
BLOC1_2	PF10046.4	gi|385803280|ref|YP_005839680.1|	-	0.021	14.9	2.1	0.025	14.7	1.1	1.5	1	1	0	1	1	1	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF4201	PF13870.1	gi|385803280|ref|YP_005839680.1|	-	0.03	13.7	1.0	0.042	13.2	0.7	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
DUF1664	PF07889.7	gi|385803280|ref|YP_005839680.1|	-	0.032	14.0	0.9	0.042	13.6	0.6	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
DUF2730	PF10805.3	gi|385803280|ref|YP_005839680.1|	-	0.037	13.7	0.7	0.056	13.1	0.5	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
RmuC	PF02646.11	gi|385803280|ref|YP_005839680.1|	-	0.04	12.7	1.2	0.046	12.5	0.8	1.1	1	0	0	1	1	1	0	RmuC	family
RP-C_C	PF11800.3	gi|385803280|ref|YP_005839680.1|	-	0.057	13.1	4.3	0.065	12.9	3.0	1.1	1	0	0	1	1	1	0	Replication	protein	C	C-terminal	region
Laminin_II	PF06009.7	gi|385803280|ref|YP_005839680.1|	-	0.058	13.1	3.4	0.11	12.3	2.4	1.6	1	1	0	1	1	1	0	Laminin	Domain	II
DUF972	PF06156.8	gi|385803280|ref|YP_005839680.1|	-	0.06	13.6	4.6	0.1	12.9	3.2	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF972)
DUF3829	PF12889.2	gi|385803280|ref|YP_005839680.1|	-	0.07	12.3	2.1	0.09	11.9	1.5	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3829)
AATF-Che1	PF13339.1	gi|385803280|ref|YP_005839680.1|	-	0.075	13.1	3.3	0.11	12.6	2.3	1.4	1	1	0	1	1	1	0	Apoptosis	antagonizing	transcription	factor
CHASE3	PF05227.8	gi|385803280|ref|YP_005839680.1|	-	0.079	12.6	4.6	0.11	12.1	3.2	1.3	1	0	0	1	1	1	0	CHASE3	domain
YPEB	PF14620.1	gi|385803280|ref|YP_005839680.1|	-	0.089	11.7	1.5	0.098	11.6	1.0	1.1	1	0	0	1	1	1	0	YpeB	sporulation
EAP30	PF04157.11	gi|385803280|ref|YP_005839680.1|	-	0.089	11.9	1.2	0.11	11.6	0.8	1.1	1	0	0	1	1	1	0	EAP30/Vps36	family
DASH_Dad2	PF08654.5	gi|385803280|ref|YP_005839680.1|	-	0.11	12.4	4.1	0.44	10.5	2.8	2.1	1	1	0	1	1	1	0	DASH	complex	subunit	Dad2
DUF1598	PF07643.6	gi|385803280|ref|YP_005839680.1|	-	0.11	12.4	0.3	0.17	11.9	0.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1598)
eIF3_N	PF09440.5	gi|385803280|ref|YP_005839680.1|	-	0.12	12.5	2.8	0.13	12.4	1.9	1.2	1	0	0	1	1	1	0	eIF3	subunit	6	N	terminal	domain
DUF1098	PF06497.6	gi|385803280|ref|YP_005839680.1|	-	0.13	12.3	0.7	0.18	11.8	0.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1098)
NPV_P10	PF05531.7	gi|385803280|ref|YP_005839680.1|	-	0.14	12.4	1.5	0.22	11.8	1.1	1.4	1	0	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
Spc24	PF08286.6	gi|385803280|ref|YP_005839680.1|	-	0.15	11.7	4.8	0.26	10.9	3.3	1.6	1	1	0	1	1	1	0	Spc24	subunit	of	Ndc80
Spc7	PF08317.6	gi|385803280|ref|YP_005839680.1|	-	0.16	10.6	3.8	0.18	10.4	2.6	1.1	1	0	0	1	1	1	0	Spc7	kinetochore	protein
T2SM	PF04612.7	gi|385803280|ref|YP_005839680.1|	-	0.16	11.7	1.6	0.2	11.4	1.1	1.1	1	0	0	1	1	1	0	Type	II	secretion	system	(T2SS),	protein	M
Reo_sigmaC	PF04582.7	gi|385803280|ref|YP_005839680.1|	-	0.17	11.0	1.3	0.17	11.0	0.9	1.1	1	0	0	1	1	1	0	Reovirus	sigma	C	capsid	protein
IncA	PF04156.9	gi|385803280|ref|YP_005839680.1|	-	0.18	11.3	3.3	0.17	11.4	1.9	1.3	1	1	0	1	1	1	0	IncA	protein
FlaC_arch	PF05377.6	gi|385803280|ref|YP_005839680.1|	-	0.18	11.7	2.7	2.7	7.9	0.4	2.2	1	1	1	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
HTH_37	PF13744.1	gi|385803280|ref|YP_005839680.1|	-	0.2	11.5	1.7	0.24	11.2	0.7	1.5	1	1	1	2	2	2	0	Helix-turn-helix	domain
DUF948	PF06103.6	gi|385803280|ref|YP_005839680.1|	-	0.2	11.5	2.1	0.45	10.3	1.4	1.6	1	1	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF948)
Syntaxin-6_N	PF09177.6	gi|385803280|ref|YP_005839680.1|	-	0.23	11.9	3.0	0.27	11.6	1.9	1.3	1	1	0	1	1	1	0	Syntaxin	6,	N-terminal
Med9	PF07544.8	gi|385803280|ref|YP_005839680.1|	-	0.23	11.2	2.0	0.33	10.7	0.9	1.7	1	1	1	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Prominin	PF05478.6	gi|385803280|ref|YP_005839680.1|	-	0.25	8.8	1.1	0.26	8.8	0.8	1.0	1	0	0	1	1	1	0	Prominin
CASP_C	PF08172.7	gi|385803280|ref|YP_005839680.1|	-	0.3	10.0	3.2	0.4	9.6	2.2	1.1	1	0	0	1	1	1	0	CASP	C	terminal
Mnd1	PF03962.10	gi|385803280|ref|YP_005839680.1|	-	0.31	10.6	4.5	0.36	10.4	3.1	1.1	1	0	0	1	1	1	0	Mnd1	family
Atg14	PF10186.4	gi|385803280|ref|YP_005839680.1|	-	0.31	9.9	1.6	0.33	9.8	1.1	1.1	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
CENP-F_leu_zip	PF10473.4	gi|385803280|ref|YP_005839680.1|	-	0.35	10.7	7.9	0.5	10.2	5.5	1.3	1	1	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
FlgN	PF05130.7	gi|385803280|ref|YP_005839680.1|	-	0.36	11.0	5.6	0.55	10.4	3.9	1.3	1	1	0	1	1	1	0	FlgN	protein
DUF4404	PF14357.1	gi|385803280|ref|YP_005839680.1|	-	0.4	11.1	4.5	0.38	11.2	1.9	1.8	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4404)
zf-C4H2	PF10146.4	gi|385803280|ref|YP_005839680.1|	-	0.49	10.3	4.6	0.67	9.9	3.2	1.4	1	1	0	1	1	1	0	Zinc	finger-containing	protein
DUF2203	PF09969.4	gi|385803280|ref|YP_005839680.1|	-	0.53	10.5	3.4	0.72	10.0	2.1	1.4	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2203)
Halo_GVPC	PF05465.8	gi|385803280|ref|YP_005839680.1|	-	0.54	10.2	4.0	4.7	7.2	0.1	2.6	3	0	0	3	3	2	0	Halobacterial	gas	vesicle	protein	C	(GVPC)	repeat
V_ATPase_I	PF01496.14	gi|385803280|ref|YP_005839680.1|	-	0.61	7.8	2.3	0.67	7.7	1.6	1.0	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
DUF2067	PF09840.4	gi|385803280|ref|YP_005839680.1|	-	0.7	9.3	5.3	4.8	6.6	0.1	2.0	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2067)
TMF_TATA_bd	PF12325.3	gi|385803280|ref|YP_005839680.1|	-	0.84	9.3	8.0	2.1	8.1	1.2	1.9	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
HAUS6_N	PF14661.1	gi|385803280|ref|YP_005839680.1|	-	1	8.6	3.6	1.5	8.0	2.5	1.3	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	6	N-terminus
TMF_DNA_bd	PF12329.3	gi|385803280|ref|YP_005839680.1|	-	1.1	9.0	7.5	0.89	9.4	2.2	2.6	1	1	2	3	3	3	0	TATA	element	modulatory	factor	1	DNA	binding
APG6	PF04111.7	gi|385803280|ref|YP_005839680.1|	-	1.2	8.0	6.5	1.4	7.8	4.5	1.1	1	0	0	1	1	1	0	Autophagy	protein	Apg6
DUF2802	PF10975.3	gi|385803280|ref|YP_005839680.1|	-	1.6	8.5	4.5	17	5.2	3.1	2.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2802)
DivIVA	PF05103.8	gi|385803280|ref|YP_005839680.1|	-	2.2	8.3	9.3	4.3	7.4	6.4	1.5	1	1	0	1	1	1	0	DivIVA	protein
HisKA	PF00512.20	gi|385803280|ref|YP_005839680.1|	-	3.1	7.8	5.4	13	5.9	2.4	2.6	1	1	1	2	2	2	0	His	Kinase	A	(phospho-acceptor)	domain
Sigma70_ner	PF04546.8	gi|385803280|ref|YP_005839680.1|	-	5.8	6.4	11.1	0.4	10.2	0.4	2.0	1	1	1	2	2	2	0	Sigma-70,	non-essential	region
CoA_binding_2	PF13380.1	gi|385803281|ref|YP_005839681.1|	-	1.4e-31	109.0	0.1	1.7e-31	108.7	0.0	1.1	1	0	0	1	1	1	1	CoA	binding	domain
CoA_binding	PF02629.14	gi|385803281|ref|YP_005839681.1|	-	0.00022	21.6	0.0	0.00041	20.8	0.0	1.3	1	0	0	1	1	1	1	CoA	binding	domain
UbiA	PF01040.13	gi|385803282|ref|YP_005839682.1|	-	7.5e-39	133.4	23.0	9.4e-39	133.1	16.0	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
DUF1422	PF07226.6	gi|385803282|ref|YP_005839682.1|	-	6.2	6.5	9.8	0.4	10.4	1.4	2.6	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1422)
FKBP_C	PF00254.23	gi|385803283|ref|YP_005839683.1|	-	1.1e-19	70.1	0.1	1.6e-19	69.6	0.1	1.3	1	0	0	1	1	1	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
Toxin_62	PF15540.1	gi|385803283|ref|YP_005839683.1|	-	0.11	12.6	0.6	7.4	6.7	0.1	2.1	1	1	0	2	2	2	0	Putative	toxin	62
YajC	PF02699.10	gi|385803283|ref|YP_005839683.1|	-	0.15	11.7	0.8	0.4	10.3	0.3	1.9	2	0	0	2	2	2	0	Preprotein	translocase	subunit
HTH_12	PF08461.5	gi|385803284|ref|YP_005839684.1|	-	0.0013	18.4	0.0	0.0024	17.5	0.0	1.6	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_24	PF13412.1	gi|385803284|ref|YP_005839684.1|	-	0.0025	17.1	0.1	0.0039	16.5	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MotA_activ	PF09114.5	gi|385803284|ref|YP_005839684.1|	-	0.035	13.8	0.1	0.041	13.6	0.1	1.1	1	0	0	1	1	1	0	Transcription	factor	MotA,	activation	domain
Phage_rep_org_N	PF09681.5	gi|385803284|ref|YP_005839684.1|	-	0.05	13.1	0.1	0.083	12.4	0.0	1.5	1	1	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
DUF2513	PF10711.4	gi|385803284|ref|YP_005839684.1|	-	0.067	13.2	0.0	0.12	12.5	0.0	1.4	1	1	0	1	1	1	0	Hypothetical	protein	(DUF2513)
DUF2680	PF10925.3	gi|385803284|ref|YP_005839684.1|	-	0.082	12.7	0.2	0.18	11.6	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2680)
HTH_5	PF01022.15	gi|385803284|ref|YP_005839684.1|	-	0.082	12.5	0.1	0.18	11.4	0.1	1.6	1	1	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Matrilin_ccoil	PF10393.4	gi|385803284|ref|YP_005839684.1|	-	0.09	12.1	1.1	0.15	11.4	0.2	1.7	2	0	0	2	2	2	0	Trimeric	coiled-coil	oligomerisation	domain	of	matrilin
DUF977	PF06163.6	gi|385803284|ref|YP_005839684.1|	-	0.12	12.0	0.0	0.14	11.9	0.0	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF977)
HHH	PF00633.18	gi|385803285|ref|YP_005839685.1|	-	0.0028	17.2	0.2	0.0083	15.7	0.0	1.9	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_5	PF14520.1	gi|385803285|ref|YP_005839685.1|	-	0.012	15.7	0.1	0.21	11.7	0.0	2.3	1	1	0	1	1	1	0	Helix-hairpin-helix	domain
Transposase_20	PF02371.11	gi|385803285|ref|YP_005839685.1|	-	0.033	14.2	0.0	0.055	13.5	0.0	1.3	1	0	0	1	1	1	0	Transposase	IS116/IS110/IS902	family
Methyltransf_3	PF01596.12	gi|385803285|ref|YP_005839685.1|	-	0.11	11.4	0.0	0.16	11.0	0.0	1.3	1	0	0	1	1	1	0	O-methyltransferase
zf-C2H2	PF00096.21	gi|385803292|ref|YP_005839692.1|	-	0.021	15.1	1.1	0.052	13.9	0.1	2.1	1	1	1	2	2	2	0	Zinc	finger,	C2H2	type
zf-C2H2_6	PF13912.1	gi|385803292|ref|YP_005839692.1|	-	0.024	14.5	0.3	0.044	13.6	0.2	1.5	1	0	0	1	1	1	0	C2H2-type	zinc	finger
Antitoxin-MazE	PF04014.13	gi|385803293|ref|YP_005839693.1|	-	0.0008	19.0	0.2	0.0018	17.9	0.2	1.7	1	1	0	1	1	1	1	Antidote-toxin	recognition	MazE
PIN	PF01850.16	gi|385803294|ref|YP_005839694.1|	-	0.099	12.9	0.7	0.13	12.6	0.5	1.3	1	0	0	1	1	1	0	PIN	domain
DUF3328	PF11807.3	gi|385803295|ref|YP_005839695.1|	-	0.06	13.0	0.1	0.092	12.4	0.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3328)
RskA	PF10099.4	gi|385803295|ref|YP_005839695.1|	-	0.086	12.5	0.0	0.12	12.1	0.0	1.1	1	0	0	1	1	1	0	Anti-sigma-K	factor	rskA
PNP_UDP_1	PF01048.15	gi|385803296|ref|YP_005839696.1|	-	3.2e-25	88.4	0.1	3.9e-25	88.1	0.1	1.1	1	0	0	1	1	1	1	Phosphorylase	superfamily
Afaf	PF15339.1	gi|385803297|ref|YP_005839697.1|	-	0.058	12.9	0.0	0.089	12.3	0.0	1.3	1	0	0	1	1	1	0	Acrosome	formation-associated	factor
DUF3988	PF13149.1	gi|385803297|ref|YP_005839697.1|	-	0.064	12.7	0.0	0.077	12.4	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3988)
TrmB	PF01978.14	gi|385803298|ref|YP_005839698.1|	-	0.00033	20.3	0.0	0.00042	19.9	0.0	1.1	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Frankia_peptide	PF14407.1	gi|385803298|ref|YP_005839698.1|	-	0.0018	18.0	0.3	0.0076	15.9	0.0	2.0	2	0	0	2	2	2	1	Ribosomally	synthesized	peptide	prototyped	by	Frankia	Franean1_4349.
HTH_27	PF13463.1	gi|385803298|ref|YP_005839698.1|	-	0.0034	17.6	0.0	0.0044	17.3	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.2	gi|385803298|ref|YP_005839698.1|	-	0.014	15.1	0.0	0.019	14.7	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|385803298|ref|YP_005839698.1|	-	0.13	11.9	0.0	0.16	11.6	0.0	1.2	1	0	0	1	1	1	0	MarR	family
PadR	PF03551.9	gi|385803298|ref|YP_005839698.1|	-	0.15	11.8	0.0	0.91	9.3	0.0	1.9	1	1	1	2	2	2	0	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.14	gi|385803300|ref|YP_005839700.1|	-	1.6e-12	46.9	0.1	4.4e-12	45.5	0.0	1.7	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|385803300|ref|YP_005839700.1|	-	3.5e-08	33.1	0.0	6.9e-08	32.1	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|385803300|ref|YP_005839700.1|	-	2.2e-06	27.2	0.0	8.6e-06	25.3	0.0	2.1	2	1	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.5	gi|385803300|ref|YP_005839700.1|	-	4.1e-06	26.2	0.0	1.1e-05	24.8	0.0	1.8	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.15	gi|385803300|ref|YP_005839700.1|	-	3.5e-05	23.3	0.0	8e-05	22.2	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.1	gi|385803300|ref|YP_005839700.1|	-	4e-05	22.9	0.0	0.00013	21.2	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.17	gi|385803300|ref|YP_005839700.1|	-	0.00022	20.8	0.0	0.00051	19.6	0.0	1.6	1	1	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|385803300|ref|YP_005839700.1|	-	0.0021	18.3	0.0	0.0048	17.1	0.0	1.7	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_11	PF08279.7	gi|385803300|ref|YP_005839700.1|	-	0.0034	16.9	0.0	0.0069	16.0	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_29	PF13551.1	gi|385803300|ref|YP_005839700.1|	-	0.0088	16.1	0.0	0.023	14.8	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_28	PF13518.1	gi|385803300|ref|YP_005839700.1|	-	0.0099	15.8	0.0	0.043	13.8	0.0	2.0	2	1	0	2	2	2	1	Helix-turn-helix	domain
Penicillinase_R	PF03965.11	gi|385803300|ref|YP_005839700.1|	-	0.015	15.4	0.0	0.028	14.5	0.0	1.5	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_DeoR	PF08220.7	gi|385803300|ref|YP_005839700.1|	-	0.023	14.1	0.0	0.05	13.1	0.0	1.6	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_39	PF14090.1	gi|385803300|ref|YP_005839700.1|	-	0.027	13.9	0.0	0.066	12.6	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
PadR	PF03551.9	gi|385803300|ref|YP_005839700.1|	-	0.031	14.0	0.0	0.061	13.1	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
FaeA	PF04703.7	gi|385803300|ref|YP_005839700.1|	-	0.097	12.8	0.0	0.2	11.8	0.0	1.4	1	0	0	1	1	1	0	FaeA-like	protein
Rrf2	PF02082.15	gi|385803300|ref|YP_005839700.1|	-	0.1	12.7	0.0	0.36	10.9	0.0	1.9	2	0	0	2	2	2	0	Transcriptional	regulator
TrmB	PF01978.14	gi|385803303|ref|YP_005839703.1|	-	3.5e-05	23.4	0.0	0.00017	21.2	0.0	2.1	2	1	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|385803303|ref|YP_005839703.1|	-	9.1e-05	21.9	0.1	0.00025	20.5	0.0	1.7	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.7	gi|385803303|ref|YP_005839703.1|	-	0.00091	18.8	0.0	0.085	12.5	0.0	2.5	2	0	0	2	2	2	1	HTH	domain
MarR_2	PF12802.2	gi|385803303|ref|YP_005839703.1|	-	0.0017	17.9	0.0	0.0064	16.1	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_20	PF12840.2	gi|385803303|ref|YP_005839703.1|	-	0.0092	15.7	0.1	0.11	12.3	0.0	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|385803303|ref|YP_005839703.1|	-	0.02	14.2	0.2	0.062	12.6	0.0	1.9	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
DUF1764	PF08576.5	gi|385803303|ref|YP_005839703.1|	-	0.032	15.0	0.3	0.049	14.4	0.2	1.6	1	1	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF1764)
HTH_29	PF13551.1	gi|385803303|ref|YP_005839703.1|	-	0.033	14.3	0.5	0.17	12.0	0.3	2.1	1	1	0	1	1	1	0	Winged	helix-turn	helix
HTH_6	PF01418.12	gi|385803303|ref|YP_005839703.1|	-	0.046	13.4	0.0	0.24	11.1	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain,	rpiR	family
WYL	PF13280.1	gi|385803303|ref|YP_005839703.1|	-	0.068	13.0	0.4	0.67	9.8	0.2	2.0	1	1	0	1	1	1	0	WYL	domain
Fe_dep_repress	PF01325.14	gi|385803303|ref|YP_005839703.1|	-	0.086	12.7	0.0	2.5	8.1	0.0	2.2	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TBPIP	PF07106.8	gi|385803303|ref|YP_005839703.1|	-	0.12	11.9	0.3	0.22	11.0	0.2	1.5	1	0	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
DUF1192	PF06698.6	gi|385803303|ref|YP_005839703.1|	-	0.44	10.3	4.5	6.2	6.7	0.1	3.1	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1192)
TrmB	PF01978.14	gi|385803304|ref|YP_005839704.1|	-	9.5e-11	41.2	0.4	3.4e-10	39.4	0.0	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|385803304|ref|YP_005839704.1|	-	7e-07	28.9	0.2	1.9e-06	27.5	0.0	1.9	2	1	1	3	3	2	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|385803304|ref|YP_005839704.1|	-	1.9e-05	23.9	0.0	0.00012	21.3	0.0	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|385803304|ref|YP_005839704.1|	-	2.7e-05	23.7	0.0	7.3e-05	22.3	0.0	1.8	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
F-112	PF09645.5	gi|385803304|ref|YP_005839704.1|	-	9.6e-05	22.2	0.0	0.2	11.5	0.0	2.2	2	0	0	2	2	2	2	F-112	protein
MarR_2	PF12802.2	gi|385803304|ref|YP_005839704.1|	-	0.0039	16.8	0.7	0.024	14.3	0.0	2.3	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.5	gi|385803304|ref|YP_005839704.1|	-	0.005	16.4	0.1	0.029	13.9	0.0	2.2	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
Penicillinase_R	PF03965.11	gi|385803304|ref|YP_005839704.1|	-	0.027	14.5	0.0	0.054	13.5	0.0	1.5	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_DeoR	PF08220.7	gi|385803304|ref|YP_005839704.1|	-	0.058	12.9	0.0	0.18	11.3	0.0	1.9	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
PadR	PF03551.9	gi|385803304|ref|YP_005839704.1|	-	0.073	12.8	0.0	0.25	11.1	0.0	2.0	1	1	1	2	2	2	0	Transcriptional	regulator	PadR-like	family
FeoC	PF09012.5	gi|385803304|ref|YP_005839704.1|	-	0.073	12.7	0.0	0.98	9.1	0.0	2.1	2	0	0	2	2	2	0	FeoC	like	transcriptional	regulator
HTH_29	PF13551.1	gi|385803304|ref|YP_005839704.1|	-	0.085	13.0	0.0	0.24	11.5	0.0	1.8	1	1	1	2	2	2	0	Winged	helix-turn	helix
TFIIE_alpha	PF02002.12	gi|385803304|ref|YP_005839704.1|	-	0.088	12.3	0.1	0.68	9.4	0.0	2.1	1	1	0	2	2	2	0	TFIIE	alpha	subunit
HTH_34	PF13601.1	gi|385803304|ref|YP_005839704.1|	-	0.11	12.5	0.0	0.19	11.7	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Rrf2	PF02082.15	gi|385803304|ref|YP_005839704.1|	-	0.11	12.5	0.1	4.8	7.3	0.0	2.2	2	0	0	2	2	2	0	Transcriptional	regulator
RP-C	PF03428.8	gi|385803304|ref|YP_005839704.1|	-	0.12	11.8	0.0	0.2	11.0	0.0	1.3	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
Amidohydro_5	PF13594.1	gi|385803304|ref|YP_005839704.1|	-	0.99	9.2	3.5	2.3	8.1	2.4	1.6	1	1	0	1	1	1	0	Amidohydrolase
Methyltransf_21	PF05050.7	gi|385803307|ref|YP_005839707.1|	-	2.3e-25	89.4	0.0	2.9e-25	89.1	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	FkbM	domain
Methyltransf_18	PF12847.2	gi|385803307|ref|YP_005839707.1|	-	3.5e-06	27.5	0.0	4.4e-06	27.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
V_cholerae_RfbT	PF05575.6	gi|385803307|ref|YP_005839707.1|	-	1.7e-05	24.0	0.0	2.2e-05	23.6	0.0	1.1	1	0	0	1	1	1	1	Vibrio	cholerae	RfbT	protein
Met_10	PF02475.11	gi|385803307|ref|YP_005839707.1|	-	4.1e-05	23.2	0.1	8e-05	22.3	0.0	1.5	1	1	0	1	1	1	1	Met-10+	like-protein
MTS	PF05175.9	gi|385803307|ref|YP_005839707.1|	-	0.0012	18.2	0.0	0.0022	17.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.8	gi|385803307|ref|YP_005839707.1|	-	0.0037	16.4	0.1	0.005	16.0	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Cons_hypoth95	PF03602.10	gi|385803307|ref|YP_005839707.1|	-	0.0069	15.7	0.0	0.038	13.3	0.0	1.9	1	1	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_23	PF13489.1	gi|385803307|ref|YP_005839707.1|	-	0.027	14.1	0.0	0.036	13.8	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|385803307|ref|YP_005839707.1|	-	0.063	13.3	0.0	0.074	13.0	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|385803307|ref|YP_005839707.1|	-	0.063	12.8	0.0	0.1	12.2	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
NCKAP5	PF15246.1	gi|385803307|ref|YP_005839707.1|	-	0.084	12.2	0.0	0.26	10.6	0.0	1.7	1	1	0	1	1	1	0	Nck-associated	protein	5,	Peripheral	clock	protein
RrnaAD	PF00398.15	gi|385803307|ref|YP_005839707.1|	-	0.12	11.3	0.0	0.17	10.8	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
HicB	PF05534.7	gi|385803309|ref|YP_005839709.1|	-	0.0012	18.4	0.1	0.33	10.5	0.0	2.3	2	0	0	2	2	2	2	HicB	family
Tub_2	PF04525.7	gi|385803310|ref|YP_005839710.1|	-	3.7e-08	32.9	1.2	6.7e-06	25.6	0.6	2.9	1	1	1	2	2	2	2	Tubby	C	2
Scramblase	PF03803.10	gi|385803310|ref|YP_005839710.1|	-	0.062	12.3	0.1	5.3	6.0	0.0	2.5	1	1	0	2	2	2	0	Scramblase
Glyco_hydro_31	PF01055.21	gi|385803311|ref|YP_005839711.1|	-	2.3e-110	369.4	0.1	2.9e-110	369.1	0.1	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	31
Gal_mutarotas_2	PF13802.1	gi|385803311|ref|YP_005839711.1|	-	2e-14	53.1	0.0	4.5e-13	48.8	0.0	2.5	2	0	0	2	2	2	1	Galactose	mutarotase-like
SGL	PF08450.7	gi|385803312|ref|YP_005839712.1|	-	5.2e-07	29.2	1.4	0.0016	17.9	0.1	3.1	1	1	1	2	2	2	2	SMP-30/Gluconolaconase/LRE-like	region
Reg_prop	PF07494.6	gi|385803312|ref|YP_005839712.1|	-	0.013	15.4	0.1	2.5	8.4	0.0	4.1	4	0	0	4	4	4	0	Two	component	regulator	propeller
NHL	PF01436.16	gi|385803312|ref|YP_005839712.1|	-	0.17	11.8	11.7	30	4.8	0.0	5.6	6	0	0	6	6	6	0	NHL	repeat
DUF1902	PF08972.6	gi|385803312|ref|YP_005839712.1|	-	0.18	11.3	0.8	0.46	10.0	0.6	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1902)
Sensor	PF13796.1	gi|385803313|ref|YP_005839713.1|	-	1.7e-35	122.2	19.7	1.3e-34	119.4	10.2	1.6	1	1	1	2	2	2	2	Putative	sensor
DUF3487	PF11990.3	gi|385803313|ref|YP_005839713.1|	-	4.5	6.6	11.0	0.64	9.4	0.9	2.5	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3487)
PRA1	PF03208.14	gi|385803313|ref|YP_005839713.1|	-	8.9	5.6	12.1	1.4	8.2	2.0	2.1	2	0	0	2	2	2	0	PRA1	family	protein
DUF2250	PF10007.4	gi|385803314|ref|YP_005839714.1|	-	6.6e-62	205.4	3.8	9.3e-31	105.6	0.2	2.5	2	1	0	2	2	2	2	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
FbpA	PF05833.6	gi|385803314|ref|YP_005839714.1|	-	5.1e-06	25.2	1.7	3.7e-05	22.4	0.2	2.1	2	0	0	2	2	2	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
HTH_Crp_2	PF13545.1	gi|385803314|ref|YP_005839714.1|	-	0.002	17.8	0.9	0.15	11.8	0.0	3.0	3	0	0	3	3	3	1	Crp-like	helix-turn-helix	domain
DUF4423	PF14394.1	gi|385803314|ref|YP_005839714.1|	-	0.0038	16.7	0.0	0.3	10.6	0.0	2.3	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4423)
HTH_27	PF13463.1	gi|385803314|ref|YP_005839714.1|	-	0.03	14.6	0.7	0.85	9.9	0.1	3.0	2	1	0	2	2	2	0	Winged	helix	DNA-binding	domain
Phage_rep_org_N	PF09681.5	gi|385803314|ref|YP_005839714.1|	-	0.081	12.4	0.0	4.7	6.8	0.0	2.3	2	0	0	2	2	2	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
NapD	PF03927.8	gi|385803314|ref|YP_005839714.1|	-	0.097	12.5	0.0	0.24	11.2	0.0	1.7	1	0	0	1	1	1	0	NapD	protein
Usp	PF00582.21	gi|385803315|ref|YP_005839715.1|	-	1.6e-10	41.3	0.4	2.4e-10	40.7	0.3	1.3	1	1	0	1	1	1	1	Universal	stress	protein	family
Spermine_synth	PF01564.12	gi|385803318|ref|YP_005839718.1|	-	1.1e-16	60.5	0.0	1.7e-16	59.9	0.0	1.2	1	0	0	1	1	1	1	Spermine/spermidine	synthase
Methyltransf_25	PF13649.1	gi|385803318|ref|YP_005839718.1|	-	0.017	15.4	0.0	0.035	14.4	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
MTS	PF05175.9	gi|385803318|ref|YP_005839718.1|	-	0.024	14.0	0.0	0.041	13.2	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_31	PF13847.1	gi|385803318|ref|YP_005839718.1|	-	0.085	12.4	0.0	0.15	11.6	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|385803318|ref|YP_005839718.1|	-	0.13	12.8	0.0	0.23	12.0	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
DUF2617	PF10936.3	gi|385803319|ref|YP_005839719.1|	-	3.2e-05	23.5	0.2	7.8e-05	22.2	0.1	1.7	1	1	0	1	1	1	1	Protein	of	unknown	function	DUF2617
CmcI	PF04989.7	gi|385803319|ref|YP_005839719.1|	-	0.033	13.4	0.2	0.054	12.8	0.0	1.4	2	0	0	2	2	2	0	Cephalosporin	hydroxylase
Pentapeptide_3	PF13576.1	gi|385803320|ref|YP_005839720.1|	-	2.4e-28	97.7	96.9	2.7e-07	30.3	9.9	11.1	4	2	4	11	11	11	9	Pentapeptide	repeats	(9	copies)
Ion_trans_2	PF07885.11	gi|385803320|ref|YP_005839720.1|	-	1.4e-05	24.6	6.3	1.4e-05	24.6	4.3	2.2	2	0	0	2	2	2	1	Ion	channel
DUF3672	PF12421.3	gi|385803320|ref|YP_005839720.1|	-	3.3	7.8	5.4	0.96	9.5	0.0	2.7	3	0	0	3	3	3	0	Fibronectin	type	III	protein
DUF3060	PF11259.3	gi|385803321|ref|YP_005839721.1|	-	4.9e-05	22.8	0.8	0.0003	20.3	0.1	2.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3060)
DZR	PF12773.2	gi|385803321|ref|YP_005839721.1|	-	0.05	13.4	0.2	0.1	12.4	0.2	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
FdhE	PF04216.7	gi|385803321|ref|YP_005839721.1|	-	0.13	11.9	0.0	0.17	11.5	0.0	1.1	1	0	0	1	1	1	0	Protein	involved	in	formate	dehydrogenase	formation
zf-ribbon_3	PF13248.1	gi|385803321|ref|YP_005839721.1|	-	0.17	11.1	0.3	0.17	11.1	0.2	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|385803321|ref|YP_005839721.1|	-	0.17	11.3	1.1	0.45	10.0	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF1610	PF07754.6	gi|385803321|ref|YP_005839721.1|	-	0.32	11.1	6.4	6.6	6.9	1.0	2.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
Ogr_Delta	PF04606.7	gi|385803321|ref|YP_005839721.1|	-	0.41	10.3	3.2	1.6	8.4	2.2	1.9	1	1	0	1	1	1	0	Ogr/Delta-like	zinc	finger
Sporozoite_P67	PF05642.6	gi|385803322|ref|YP_005839722.1|	-	0.013	13.4	0.8	0.013	13.3	0.6	1.0	1	0	0	1	1	1	0	Sporozoite	P67	surface	antigen
DUF4396	PF14342.1	gi|385803322|ref|YP_005839722.1|	-	2.7	8.0	7.2	4.4	7.4	1.9	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4396)
Gly-zipper_Omp	PF13488.1	gi|385803322|ref|YP_005839722.1|	-	5.2	6.7	18.6	0.18	11.4	5.9	2.9	3	0	0	3	3	3	0	Glycine	zipper
Viral_NABP	PF05515.6	gi|385803323|ref|YP_005839723.1|	-	0.65	10.2	4.7	1.2	9.4	3.2	1.4	1	0	0	1	1	1	0	Viral	nucleic	acid	binding
PMSR	PF01625.16	gi|385803326|ref|YP_005839726.1|	-	1.6e-36	125.5	0.0	2.1e-36	125.1	0.0	1.2	1	0	0	1	1	1	1	Peptide	methionine	sulfoxide	reductase
SelR	PF01641.13	gi|385803327|ref|YP_005839727.1|	-	4.6e-47	158.7	0.1	5.2e-47	158.5	0.1	1.0	1	0	0	1	1	1	1	SelR	domain
Yippee-Mis18	PF03226.9	gi|385803327|ref|YP_005839727.1|	-	0.0081	16.1	0.1	0.018	15.0	0.1	1.6	1	1	0	1	1	1	1	Yippee	zinc-binding/DNA-binding	/Mis18,	centromere	assembly
DUF2296	PF10058.4	gi|385803327|ref|YP_005839727.1|	-	0.022	14.5	0.1	0.45	10.3	0.0	2.2	2	0	0	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
HNH_5	PF14279.1	gi|385803327|ref|YP_005839727.1|	-	0.024	14.6	0.9	0.095	12.7	0.1	2.0	2	0	0	2	2	2	0	HNH	endonuclease
Cytochrome_C554	PF13435.1	gi|385803327|ref|YP_005839727.1|	-	0.054	13.5	0.2	0.099	12.6	0.1	1.5	1	1	0	1	1	1	0	Cytochrome	c554	and	c-prime
Endonuclease_7	PF02945.10	gi|385803327|ref|YP_005839727.1|	-	0.093	12.4	0.3	0.47	10.1	0.1	1.9	2	0	0	2	2	2	0	Recombination	endonuclease	VII
CutA1	PF03091.10	gi|385803328|ref|YP_005839728.1|	-	1.1e-25	89.2	0.2	1.2e-25	89.1	0.1	1.0	1	0	0	1	1	1	1	CutA1	divalent	ion	tolerance	protein
PAS_9	PF13426.1	gi|385803329|ref|YP_005839729.1|	-	1.3e-15	57.6	0.0	1.5e-15	57.4	0.0	1.1	1	0	0	1	1	1	1	PAS	domain
PAS	PF00989.19	gi|385803329|ref|YP_005839729.1|	-	1.9e-07	30.8	0.0	3.1e-07	30.1	0.0	1.3	1	0	0	1	1	1	1	PAS	fold
PAS_3	PF08447.6	gi|385803329|ref|YP_005839729.1|	-	2.4e-06	27.5	0.3	3.7e-06	26.9	0.0	1.4	2	0	0	2	2	2	1	PAS	fold
PAS_8	PF13188.1	gi|385803329|ref|YP_005839729.1|	-	1.2e-05	24.9	0.0	1.8e-05	24.3	0.0	1.3	1	0	0	1	1	1	1	PAS	domain
PAS_4	PF08448.5	gi|385803329|ref|YP_005839729.1|	-	0.12	12.4	0.0	0.13	12.2	0.0	1.2	1	0	0	1	1	1	0	PAS	fold
Peptidase_S15	PF02129.13	gi|385803330|ref|YP_005839730.1|	-	4.8e-50	170.5	0.5	7e-50	169.9	0.3	1.3	1	0	0	1	1	1	1	X-Pro	dipeptidyl-peptidase	(S15	family)
PepX_C	PF08530.5	gi|385803330|ref|YP_005839730.1|	-	6.9e-45	153.6	0.4	1.2e-44	152.8	0.3	1.4	1	0	0	1	1	1	1	X-Pro	dipeptidyl-peptidase	C-terminal	non-catalytic	domain
Abhydrolase_6	PF12697.2	gi|385803330|ref|YP_005839730.1|	-	2.2e-06	27.7	0.6	4.1e-06	26.8	0.4	1.4	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Peptidase_S9	PF00326.16	gi|385803330|ref|YP_005839730.1|	-	3.8e-06	26.2	0.5	8.7e-06	25.1	0.3	1.5	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
Abhydrolase_5	PF12695.2	gi|385803330|ref|YP_005839730.1|	-	5.3e-05	23.0	0.0	0.00012	21.9	0.0	1.6	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Beta_helix	PF13229.1	gi|385803330|ref|YP_005839730.1|	-	0.099	12.3	0.2	0.22	11.2	0.2	1.5	1	0	0	1	1	1	0	Right	handed	beta	helix	region
Xan_ur_permease	PF00860.15	gi|385803331|ref|YP_005839731.1|	-	6.8e-74	248.6	48.1	1.4e-73	247.6	33.4	1.5	1	1	0	1	1	1	1	Permease	family
RhaA	PF06134.6	gi|385803332|ref|YP_005839732.1|	-	0.12	11.2	0.0	0.13	11.1	0.0	1.2	1	0	0	1	1	1	0	L-rhamnose	isomerase	(RhaA)
Amidohydro_4	PF13147.1	gi|385803333|ref|YP_005839733.1|	-	2.5e-27	96.5	0.0	8.4e-27	94.9	0.0	1.8	1	1	0	1	1	1	1	Amidohydrolase
Amidohydro_5	PF13594.1	gi|385803333|ref|YP_005839733.1|	-	9.3e-15	54.2	0.1	2.4e-14	52.8	0.1	1.8	1	0	0	1	1	1	1	Amidohydrolase
Amidohydro_1	PF01979.15	gi|385803333|ref|YP_005839733.1|	-	1.9e-10	40.9	0.1	0.00028	20.6	0.0	2.2	2	0	0	2	2	2	2	Amidohydrolase	family
Amidohydro_3	PF07969.6	gi|385803333|ref|YP_005839733.1|	-	8.7e-06	25.2	0.0	0.013	14.7	0.0	2.3	2	0	0	2	2	2	2	Amidohydrolase	family
IclR	PF01614.13	gi|385803334|ref|YP_005839734.1|	-	3.8e-30	104.2	0.0	6.4e-30	103.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.5	gi|385803334|ref|YP_005839734.1|	-	1.1e-10	40.8	0.1	6.4e-10	38.4	0.0	2.4	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.1	gi|385803334|ref|YP_005839734.1|	-	1.2e-07	30.9	0.0	2.8e-07	29.8	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|385803334|ref|YP_005839734.1|	-	1.4e-07	31.0	0.0	2.6e-07	30.1	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.14	gi|385803334|ref|YP_005839734.1|	-	8e-06	25.4	0.0	6e-05	22.6	0.0	2.3	2	1	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|385803334|ref|YP_005839734.1|	-	1e-05	25.1	0.0	2e-05	24.2	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.2	gi|385803334|ref|YP_005839734.1|	-	2e-05	24.2	0.0	5.1e-05	22.9	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF4423	PF14394.1	gi|385803334|ref|YP_005839734.1|	-	0.00076	19.0	0.0	0.0017	17.9	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HTH_DeoR	PF08220.7	gi|385803334|ref|YP_005839734.1|	-	0.0014	18.1	0.0	0.0028	17.1	0.0	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|385803334|ref|YP_005839734.1|	-	0.0019	17.6	1.2	0.0042	16.5	0.0	2.3	3	0	0	3	3	2	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.7	gi|385803334|ref|YP_005839734.1|	-	0.0064	16.1	0.0	0.016	14.8	0.0	1.7	1	0	0	1	1	1	1	HTH	domain
Fe_dep_repress	PF01325.14	gi|385803334|ref|YP_005839734.1|	-	0.0077	16.1	0.0	0.015	15.2	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Rrf2	PF02082.15	gi|385803334|ref|YP_005839734.1|	-	0.0089	16.1	0.0	0.023	14.8	0.0	1.7	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_45	PF14947.1	gi|385803334|ref|YP_005839734.1|	-	0.011	15.5	0.0	0.019	14.7	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_40	PF14493.1	gi|385803334|ref|YP_005839734.1|	-	0.014	15.6	0.0	0.036	14.2	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF2250	PF10007.4	gi|385803334|ref|YP_005839734.1|	-	0.016	15.0	0.0	0.035	14.0	0.0	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
MarR_2	PF12802.2	gi|385803334|ref|YP_005839734.1|	-	0.018	14.6	0.0	0.071	12.7	0.0	2.0	2	0	0	2	2	2	0	MarR	family
HTH_34	PF13601.1	gi|385803334|ref|YP_005839734.1|	-	0.032	14.2	0.0	0.06	13.3	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
LexA_DNA_bind	PF01726.11	gi|385803334|ref|YP_005839734.1|	-	0.054	13.0	0.0	0.22	11.1	0.0	2.0	2	0	0	2	2	2	0	LexA	DNA	binding	domain
DUF2042	PF09743.4	gi|385803334|ref|YP_005839734.1|	-	0.073	12.3	0.0	0.1	11.8	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2042)
EAP30	PF04157.11	gi|385803334|ref|YP_005839734.1|	-	0.091	11.9	0.0	0.17	11.0	0.0	1.4	1	0	0	1	1	1	0	EAP30/Vps36	family
Cyclase	PF04199.8	gi|385803335|ref|YP_005839735.1|	-	1.1e-33	116.3	0.6	1.4e-33	115.9	0.4	1.1	1	0	0	1	1	1	1	Putative	cyclase
ADH_N	PF08240.7	gi|385803336|ref|YP_005839736.1|	-	2e-25	88.6	0.1	3.3e-25	87.9	0.0	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|385803336|ref|YP_005839736.1|	-	8.9e-15	54.3	0.1	1.8e-14	53.4	0.1	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|385803336|ref|YP_005839736.1|	-	2.2e-07	31.8	0.2	7e-07	30.1	0.1	1.9	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
adh_short	PF00106.20	gi|385803336|ref|YP_005839736.1|	-	0.0006	19.7	0.8	0.0014	18.5	0.6	1.6	1	0	0	1	1	1	1	short	chain	dehydrogenase
AlaDh_PNT_C	PF01262.16	gi|385803336|ref|YP_005839736.1|	-	0.0028	17.2	0.1	0.0057	16.2	0.0	1.4	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
3HCDH_N	PF02737.13	gi|385803336|ref|YP_005839736.1|	-	0.0038	16.8	0.2	0.0067	16.0	0.2	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
RmlD_sub_bind	PF04321.12	gi|385803336|ref|YP_005839736.1|	-	0.014	14.2	0.2	0.029	13.2	0.1	1.5	2	0	0	2	2	2	0	RmlD	substrate	binding	domain
NmrA	PF05368.8	gi|385803336|ref|YP_005839736.1|	-	0.068	12.4	0.4	0.11	11.7	0.3	1.3	1	0	0	1	1	1	0	NmrA-like	family
NAD_binding_10	PF13460.1	gi|385803336|ref|YP_005839736.1|	-	0.069	13.1	1.0	0.1	12.6	0.3	1.6	2	0	0	2	2	2	0	NADH(P)-binding
2-Hacid_dh_C	PF02826.14	gi|385803336|ref|YP_005839736.1|	-	0.074	12.1	0.0	0.13	11.4	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Epimerase	PF01370.16	gi|385803336|ref|YP_005839736.1|	-	0.077	12.4	0.2	0.12	11.7	0.1	1.3	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
CoA_transf_3	PF02515.12	gi|385803337|ref|YP_005839737.1|	-	2.4e-64	216.0	0.0	3.3e-64	215.6	0.0	1.2	1	0	0	1	1	1	1	CoA-transferase	family	III
XdhC_C	PF13478.1	gi|385803338|ref|YP_005839738.1|	-	5.7e-29	101.1	0.0	1.3e-28	99.9	0.0	1.6	1	0	0	1	1	1	1	XdhC	Rossmann	domain
XdhC_CoxI	PF02625.11	gi|385803338|ref|YP_005839738.1|	-	1.7e-25	88.4	0.7	2.3e-20	71.9	0.1	2.4	2	0	0	2	2	2	2	XdhC	and	CoxI	family
FAD_binding_5	PF00941.16	gi|385803339|ref|YP_005839739.1|	-	8.5e-45	152.2	0.0	1.2e-44	151.7	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain	in	molybdopterin	dehydrogenase
CO_deh_flav_C	PF03450.12	gi|385803339|ref|YP_005839739.1|	-	6.2e-19	67.8	0.2	9.2e-19	67.2	0.2	1.3	1	0	0	1	1	1	1	CO	dehydrogenase	flavoprotein	C-terminal	domain
Fer2_2	PF01799.15	gi|385803340|ref|YP_005839740.1|	-	3.7e-33	113.2	0.1	3.7e-33	113.2	0.1	1.6	2	0	0	2	2	2	1	[2Fe-2S]	binding	domain
Fer2	PF00111.22	gi|385803340|ref|YP_005839740.1|	-	7.9e-07	28.7	0.4	7.9e-07	28.7	0.3	2.0	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.1	gi|385803340|ref|YP_005839740.1|	-	3.4e-05	23.6	0.1	6.3e-05	22.7	0.1	1.6	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.1	gi|385803340|ref|YP_005839740.1|	-	0.028	14.2	0.4	0.8	9.5	0.1	2.3	2	0	0	2	2	2	0	2Fe-2S	iron-sulfur	cluster	binding	domain
TSC22	PF01166.13	gi|385803340|ref|YP_005839740.1|	-	0.082	12.8	0.0	0.17	11.8	0.0	1.5	1	0	0	1	1	1	0	TSC-22/dip/bun	family
Ald_Xan_dh_C2	PF02738.13	gi|385803341|ref|YP_005839741.1|	-	5.1e-108	361.7	0.0	3.1e-107	359.1	0.0	1.9	1	1	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.17	gi|385803341|ref|YP_005839741.1|	-	4.1e-20	71.9	0.0	1.1e-19	70.5	0.0	1.7	2	0	0	2	2	2	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
DUF4278	PF14105.1	gi|385803341|ref|YP_005839741.1|	-	0.1	12.5	0.1	1.7	8.6	0.0	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4278)
NTP_transf_3	PF12804.2	gi|385803342|ref|YP_005839742.1|	-	1.7e-29	102.9	0.1	2.1e-29	102.6	0.1	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.14	gi|385803342|ref|YP_005839742.1|	-	1.2e-05	24.9	0.9	1.7e-05	24.4	0.6	1.2	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
CTP_transf_3	PF02348.14	gi|385803342|ref|YP_005839742.1|	-	0.02	14.5	0.0	0.025	14.2	0.0	1.1	1	0	0	1	1	1	0	Cytidylyltransferase
STAS	PF01740.16	gi|385803342|ref|YP_005839742.1|	-	0.12	11.7	0.0	0.16	11.3	0.0	1.3	1	0	0	1	1	1	0	STAS	domain
HxlR	PF01638.12	gi|385803343|ref|YP_005839743.1|	-	1.6e-11	43.6	0.4	7.5e-11	41.5	0.1	2.0	2	0	0	2	2	2	1	HxlR-like	helix-turn-helix
Response_reg	PF00072.19	gi|385803343|ref|YP_005839743.1|	-	1.3e-08	34.7	0.1	2.4e-08	33.9	0.1	1.4	1	0	0	1	1	1	1	Response	regulator	receiver	domain
DUF4364	PF14277.1	gi|385803343|ref|YP_005839743.1|	-	5.9e-05	22.7	1.4	0.0005	19.7	0.2	2.2	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4364)
HTH_45	PF14947.1	gi|385803343|ref|YP_005839743.1|	-	0.00034	20.3	0.1	0.00088	19.0	0.1	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF2114	PF09887.4	gi|385803343|ref|YP_005839743.1|	-	0.016	13.5	0.0	0.023	13.0	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2114)
Usp	PF00582.21	gi|385803344|ref|YP_005839744.1|	-	3e-08	33.9	1.8	0.00026	21.1	0.0	2.4	2	0	0	2	2	2	2	Universal	stress	protein	family
Tmemb_170	PF10190.4	gi|385803345|ref|YP_005839745.1|	-	0.00082	19.4	0.3	0.001	19.0	0.2	1.1	1	0	0	1	1	1	1	Putative	transmembrane	protein	170
7TMR-DISM_7TM	PF07695.6	gi|385803345|ref|YP_005839745.1|	-	0.017	14.8	5.0	0.019	14.6	3.5	1.0	1	0	0	1	1	1	0	7TM	diverse	intracellular	signalling
YesK	PF14150.1	gi|385803345|ref|YP_005839745.1|	-	0.2	11.7	4.1	0.32	11.1	2.8	1.6	1	1	0	1	1	1	0	YesK-like	protein
HTH_20	PF12840.2	gi|385803346|ref|YP_005839746.1|	-	3.7e-07	29.8	0.0	6.3e-07	29.1	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|385803346|ref|YP_005839746.1|	-	0.00024	20.6	0.1	0.00042	19.9	0.1	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_24	PF13412.1	gi|385803346|ref|YP_005839746.1|	-	0.00034	19.9	0.1	0.00057	19.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Sigma70_r4_2	PF08281.7	gi|385803346|ref|YP_005839746.1|	-	0.00073	18.9	0.1	0.0015	17.9	0.1	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
FUR	PF01475.14	gi|385803346|ref|YP_005839746.1|	-	0.0032	17.3	0.4	0.0039	17.1	0.3	1.3	1	1	0	1	1	1	1	Ferric	uptake	regulator	family
HTH_IclR	PF09339.5	gi|385803346|ref|YP_005839746.1|	-	0.0035	16.9	0.0	0.005	16.3	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_38	PF13936.1	gi|385803346|ref|YP_005839746.1|	-	0.0066	15.9	0.1	0.015	14.8	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|385803346|ref|YP_005839746.1|	-	0.0099	15.5	0.1	0.016	14.9	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_23	PF13384.1	gi|385803346|ref|YP_005839746.1|	-	0.017	14.7	0.1	0.03	13.9	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_AsnC-type	PF13404.1	gi|385803346|ref|YP_005839746.1|	-	0.028	13.9	0.1	0.047	13.2	0.1	1.4	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
T2SE	PF00437.15	gi|385803346|ref|YP_005839746.1|	-	0.058	12.2	0.5	0.061	12.2	0.3	1.1	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
HTH_27	PF13463.1	gi|385803346|ref|YP_005839746.1|	-	0.06	13.6	0.0	0.13	12.5	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Peptidase_C65	PF10275.4	gi|385803346|ref|YP_005839746.1|	-	0.061	12.6	1.7	0.083	12.2	1.0	1.3	1	1	0	1	1	1	0	Peptidase	C65	Otubain
HTH_17	PF12728.2	gi|385803346|ref|YP_005839746.1|	-	0.074	13.3	0.0	0.16	12.2	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|385803346|ref|YP_005839746.1|	-	0.082	12.5	0.1	0.13	11.9	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HTH_28	PF13518.1	gi|385803346|ref|YP_005839746.1|	-	0.11	12.4	0.0	0.18	11.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|385803346|ref|YP_005839746.1|	-	0.11	11.9	0.1	0.26	10.8	0.1	1.6	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
LUC7	PF03194.10	gi|385803346|ref|YP_005839746.1|	-	0.17	11.3	3.1	0.19	11.2	2.1	1.0	1	0	0	1	1	1	0	LUC7	N_terminus
AA_permease_2	PF13520.1	gi|385803347|ref|YP_005839747.1|	-	4e-46	157.4	41.2	4.8e-46	157.1	28.5	1.0	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|385803347|ref|YP_005839747.1|	-	2e-39	135.2	40.2	2.7e-39	134.8	27.9	1.1	1	0	0	1	1	1	1	Amino	acid	permease
TrkA_N	PF02254.13	gi|385803348|ref|YP_005839748.1|	-	4.3e-23	81.5	0.2	6.7e-23	80.8	0.2	1.3	1	0	0	1	1	1	1	TrkA-N	domain
NAD_binding_10	PF13460.1	gi|385803348|ref|YP_005839748.1|	-	2e-07	31.2	0.1	3.8e-07	30.2	0.1	1.5	1	1	0	1	1	1	1	NADH(P)-binding
TrkA_C	PF02080.16	gi|385803348|ref|YP_005839748.1|	-	1.8e-06	27.4	0.2	8.6e-06	25.2	0.0	2.1	2	0	0	2	2	2	1	TrkA-C	domain
NAD_binding_7	PF13241.1	gi|385803348|ref|YP_005839748.1|	-	3.2e-05	24.1	0.0	5.5e-05	23.3	0.0	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
3HCDH_N	PF02737.13	gi|385803348|ref|YP_005839748.1|	-	0.00018	21.2	0.1	0.00032	20.3	0.0	1.6	1	1	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pyr_redox	PF00070.22	gi|385803348|ref|YP_005839748.1|	-	0.0002	21.7	0.1	0.0006	20.1	0.0	1.9	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NmrA	PF05368.8	gi|385803348|ref|YP_005839748.1|	-	0.00023	20.5	0.0	0.00033	19.9	0.0	1.2	1	0	0	1	1	1	1	NmrA-like	family
FAD_binding_3	PF01494.14	gi|385803348|ref|YP_005839748.1|	-	0.00029	20.0	0.0	0.00049	19.2	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|385803348|ref|YP_005839748.1|	-	0.0003	20.0	0.0	0.00051	19.2	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.11	gi|385803348|ref|YP_005839748.1|	-	0.00042	19.7	0.0	0.00077	18.9	0.0	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
XdhC_C	PF13478.1	gi|385803348|ref|YP_005839748.1|	-	0.0047	17.2	0.0	0.0091	16.3	0.0	1.5	1	1	0	1	1	1	1	XdhC	Rossmann	domain
Shikimate_DH	PF01488.15	gi|385803348|ref|YP_005839748.1|	-	0.0072	16.4	0.1	0.013	15.6	0.0	1.6	1	1	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
adh_short	PF00106.20	gi|385803348|ref|YP_005839748.1|	-	0.0074	16.2	0.2	0.013	15.4	0.1	1.5	1	1	0	1	1	1	1	short	chain	dehydrogenase
Thi4	PF01946.12	gi|385803348|ref|YP_005839748.1|	-	0.0097	15.0	0.0	1.3	8.1	0.0	2.1	1	1	1	2	2	2	2	Thi4	family
DAO	PF01266.19	gi|385803348|ref|YP_005839748.1|	-	0.011	14.6	0.3	0.017	14.0	0.1	1.3	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
NAD_Gly3P_dh_N	PF01210.18	gi|385803348|ref|YP_005839748.1|	-	0.031	14.0	0.0	0.051	13.3	0.0	1.5	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
CPSase_L_chain	PF00289.17	gi|385803348|ref|YP_005839748.1|	-	0.051	13.6	0.0	0.077	13.1	0.0	1.4	1	1	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
NAD_binding_2	PF03446.10	gi|385803348|ref|YP_005839748.1|	-	0.054	13.3	0.0	0.078	12.8	0.0	1.3	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Saccharop_dh	PF03435.13	gi|385803348|ref|YP_005839748.1|	-	0.057	12.3	0.0	0.072	12.0	0.0	1.1	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
UDPG_MGDP_dh_N	PF03721.9	gi|385803348|ref|YP_005839748.1|	-	0.073	12.4	0.4	0.16	11.3	0.0	1.7	2	1	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
AdoHcyase_NAD	PF00670.16	gi|385803348|ref|YP_005839748.1|	-	0.09	12.6	0.0	0.43	10.4	0.0	1.9	2	0	0	2	2	2	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
Nitro_FeMo-Co	PF02579.12	gi|385803348|ref|YP_005839748.1|	-	0.093	12.8	0.0	1.5	8.9	0.0	2.5	2	1	0	2	2	2	0	Dinitrogenase	iron-molybdenum	cofactor
TrkA_N	PF02254.13	gi|385803349|ref|YP_005839749.1|	-	1.8e-39	134.3	9.7	1.9e-19	69.7	1.2	2.8	2	0	0	2	2	2	2	TrkA-N	domain
TrkA_C	PF02080.16	gi|385803349|ref|YP_005839749.1|	-	2.5e-27	94.2	0.4	2.7e-12	46.0	0.0	3.8	4	0	0	4	4	4	2	TrkA-C	domain
NAD_binding_7	PF13241.1	gi|385803349|ref|YP_005839749.1|	-	0.00038	20.6	2.6	0.00049	20.2	0.1	2.3	2	1	0	2	2	2	1	Putative	NAD(P)-binding
FAD_binding_3	PF01494.14	gi|385803349|ref|YP_005839749.1|	-	0.019	14.0	0.0	0.03	13.3	0.0	1.4	1	0	0	1	1	1	0	FAD	binding	domain
AlaDh_PNT_C	PF01262.16	gi|385803349|ref|YP_005839749.1|	-	0.048	13.2	0.1	0.13	11.7	0.0	1.7	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
ADH_zinc_N	PF00107.21	gi|385803349|ref|YP_005839749.1|	-	0.11	12.0	0.0	0.52	9.8	0.0	2.1	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
ThiF	PF00899.16	gi|385803349|ref|YP_005839749.1|	-	0.13	12.0	2.9	0.14	11.9	0.4	2.2	2	1	0	2	2	2	0	ThiF	family
NAD_binding_2	PF03446.10	gi|385803349|ref|YP_005839749.1|	-	0.14	11.9	1.5	0.23	11.2	0.1	2.0	2	0	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Saccharop_dh	PF03435.13	gi|385803349|ref|YP_005839749.1|	-	0.19	10.6	1.3	0.21	10.5	0.0	1.7	2	0	0	2	2	2	0	Saccharopine	dehydrogenase
Fibritin_C	PF07921.7	gi|385803349|ref|YP_005839749.1|	-	0.33	10.8	2.1	1.5	8.8	0.2	2.7	2	1	1	3	3	3	0	Fibritin	C-terminal	region
DUF2892	PF11127.3	gi|385803350|ref|YP_005839750.1|	-	6e-09	35.5	0.7	6.4e-09	35.5	0.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2892)
Nramp	PF01566.13	gi|385803351|ref|YP_005839751.1|	-	9.7e-59	198.9	34.9	9.7e-59	198.9	24.2	1.9	1	1	1	2	2	2	1	Natural	resistance-associated	macrophage	protein
CitMHS	PF03600.11	gi|385803352|ref|YP_005839752.1|	-	9.7e-48	162.5	0.0	6.8e-43	146.5	0.0	1.9	1	1	1	2	2	2	2	Citrate	transporter
Na_sulph_symp	PF00939.14	gi|385803352|ref|YP_005839752.1|	-	1.7e-26	93.1	35.1	4.4e-16	58.8	9.8	2.8	2	1	0	2	2	2	2	Sodium:sulfate	symporter	transmembrane	region
TrkA_C	PF02080.16	gi|385803352|ref|YP_005839752.1|	-	2.3e-20	71.9	0.9	7.5e-11	41.4	0.1	2.4	2	0	0	2	2	2	2	TrkA-C	domain
Erv26	PF04148.8	gi|385803352|ref|YP_005839752.1|	-	0.018	14.4	4.4	1.6	8.0	0.0	2.4	2	0	0	2	2	2	0	Transmembrane	adaptor	Erv26
DUF2371	PF10177.4	gi|385803352|ref|YP_005839752.1|	-	0.13	12.1	0.3	0.98	9.2	0.0	2.5	2	0	0	2	2	2	0	Uncharacterised	conserved	protein	(DUF2371)
TrkA_N	PF02254.13	gi|385803353|ref|YP_005839753.1|	-	1.1e-24	86.7	0.7	1.1e-24	86.7	0.5	1.7	2	1	0	2	2	2	1	TrkA-N	domain
NAD_binding_7	PF13241.1	gi|385803353|ref|YP_005839753.1|	-	1.8e-08	34.5	0.1	3e-08	33.8	0.1	1.3	1	0	0	1	1	1	1	Putative	NAD(P)-binding
TrkA_C	PF02080.16	gi|385803353|ref|YP_005839753.1|	-	1e-06	28.2	0.8	3.6e-06	26.4	0.1	2.1	2	0	0	2	2	2	1	TrkA-C	domain
NAD_binding_10	PF13460.1	gi|385803353|ref|YP_005839753.1|	-	8.3e-06	25.9	0.2	1.2e-05	25.3	0.1	1.2	1	0	0	1	1	1	1	NADH(P)-binding
DAO	PF01266.19	gi|385803353|ref|YP_005839753.1|	-	2.7e-05	23.2	0.5	3.1e-05	23.0	0.4	1.3	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
CPSase_L_chain	PF00289.17	gi|385803353|ref|YP_005839753.1|	-	3.9e-05	23.7	0.1	7.2e-05	22.8	0.1	1.4	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
FAD_binding_2	PF00890.19	gi|385803353|ref|YP_005839753.1|	-	4.8e-05	22.3	0.3	5.2e-05	22.2	0.2	1.1	1	0	0	1	1	1	1	FAD	binding	domain
FAD_binding_3	PF01494.14	gi|385803353|ref|YP_005839753.1|	-	0.00012	21.2	0.5	0.0011	18.1	0.0	2.1	1	1	1	2	2	2	1	FAD	binding	domain
Pyr_redox	PF00070.22	gi|385803353|ref|YP_005839753.1|	-	0.00027	21.2	0.2	0.00057	20.2	0.2	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
adh_short	PF00106.20	gi|385803353|ref|YP_005839753.1|	-	0.00028	20.8	1.7	0.00037	20.4	0.9	1.5	1	1	0	1	1	1	1	short	chain	dehydrogenase
Pyr_redox_2	PF07992.9	gi|385803353|ref|YP_005839753.1|	-	0.00089	19.1	0.2	0.001	18.9	0.1	1.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
F420_oxidored	PF03807.12	gi|385803353|ref|YP_005839753.1|	-	0.00094	19.5	1.0	0.015	15.6	0.2	2.7	2	1	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
3HCDH_N	PF02737.13	gi|385803353|ref|YP_005839753.1|	-	0.0028	17.3	0.3	0.0054	16.4	0.1	1.5	1	1	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.9	gi|385803353|ref|YP_005839753.1|	-	0.0032	16.8	0.0	0.0055	16.0	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_8	PF13450.1	gi|385803353|ref|YP_005839753.1|	-	0.0043	17.0	0.1	0.0087	16.0	0.1	1.5	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Thi4	PF01946.12	gi|385803353|ref|YP_005839753.1|	-	0.0098	15.0	0.0	0.014	14.4	0.0	1.4	1	0	0	1	1	1	1	Thi4	family
KR	PF08659.5	gi|385803353|ref|YP_005839753.1|	-	0.015	14.9	0.2	0.021	14.4	0.1	1.3	1	0	0	1	1	1	0	KR	domain
ApbA	PF02558.11	gi|385803353|ref|YP_005839753.1|	-	0.017	14.5	0.0	0.029	13.8	0.0	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
2-Hacid_dh_C	PF02826.14	gi|385803353|ref|YP_005839753.1|	-	0.02	14.0	0.1	0.031	13.4	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.7	gi|385803353|ref|YP_005839753.1|	-	0.02	14.2	0.0	0.03	13.6	0.0	1.4	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
Shikimate_DH	PF01488.15	gi|385803353|ref|YP_005839753.1|	-	0.024	14.7	0.1	0.042	13.9	0.1	1.5	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
NAD_Gly3P_dh_N	PF01210.18	gi|385803353|ref|YP_005839753.1|	-	0.037	13.7	0.0	0.076	12.7	0.0	1.5	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
HI0933_like	PF03486.9	gi|385803353|ref|YP_005839753.1|	-	0.054	11.9	0.1	0.078	11.4	0.0	1.2	1	0	0	1	1	1	0	HI0933-like	protein
NAD_binding_2	PF03446.10	gi|385803353|ref|YP_005839753.1|	-	0.077	12.8	0.1	0.18	11.6	0.0	1.6	1	1	1	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
XdhC_C	PF13478.1	gi|385803353|ref|YP_005839753.1|	-	0.086	13.1	0.1	0.19	12.0	0.0	1.6	2	0	0	2	2	2	0	XdhC	Rossmann	domain
GFO_IDH_MocA	PF01408.17	gi|385803353|ref|YP_005839753.1|	-	0.1	13.1	0.0	0.17	12.3	0.0	1.4	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Saccharop_dh	PF03435.13	gi|385803353|ref|YP_005839753.1|	-	0.12	11.2	0.1	0.17	10.8	0.1	1.2	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
Trp_halogenase	PF04820.9	gi|385803353|ref|YP_005839753.1|	-	0.13	10.8	0.1	0.17	10.4	0.0	1.2	1	0	0	1	1	1	0	Tryptophan	halogenase
Usp	PF00582.21	gi|385803354|ref|YP_005839754.1|	-	8.7e-33	113.4	0.1	9.8e-33	113.3	0.1	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF2088	PF09861.4	gi|385803355|ref|YP_005839755.1|	-	2.8e-05	23.2	0.0	4.8e-05	22.4	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2088)
UBA_4	PF14555.1	gi|385803356|ref|YP_005839756.1|	-	0.11	12.0	0.1	0.18	11.3	0.1	1.3	1	0	0	1	1	1	0	UBA-like	domain
Usp	PF00582.21	gi|385803357|ref|YP_005839757.1|	-	5.5e-57	191.8	5.0	1e-28	100.3	0.0	2.1	2	0	0	2	2	2	2	Universal	stress	protein	family
FR47	PF08445.5	gi|385803357|ref|YP_005839757.1|	-	0.08	12.7	0.0	0.24	11.1	0.0	1.9	1	1	0	1	1	1	0	FR47-like	protein
DUF21	PF01595.15	gi|385803358|ref|YP_005839758.1|	-	1.5e-50	171.0	0.3	2.1e-50	170.5	0.2	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF21
CorC_HlyC	PF03471.12	gi|385803358|ref|YP_005839758.1|	-	5.4e-20	70.9	2.3	5.9e-20	70.8	0.6	1.9	2	0	0	2	2	2	1	Transporter	associated	domain
CBS	PF00571.23	gi|385803358|ref|YP_005839758.1|	-	1.7e-15	56.5	1.6	4.9e-07	29.4	0.4	2.7	2	0	0	2	2	2	2	CBS	domain
PHB_acc_N	PF07879.6	gi|385803358|ref|YP_005839758.1|	-	0.046	13.4	0.4	4.9	6.9	0.0	2.7	2	0	0	2	2	2	0	PHB/PHA	accumulation	regulator	DNA-binding	domain
GerE	PF00196.14	gi|385803359|ref|YP_005839759.1|	-	9.9e-08	31.1	0.0	1.7e-07	30.4	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
DUF4379	PF14311.1	gi|385803359|ref|YP_005839759.1|	-	0.0035	17.1	3.1	0.079	12.7	0.7	2.4	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4379)
HTH_38	PF13936.1	gi|385803359|ref|YP_005839759.1|	-	0.0041	16.6	0.0	0.01	15.3	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
DUF2481	PF10654.4	gi|385803359|ref|YP_005839759.1|	-	0.0087	15.7	0.1	0.012	15.2	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2481)
HTH_24	PF13412.1	gi|385803359|ref|YP_005839759.1|	-	0.0097	15.2	0.0	0.018	14.4	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Sigma70_r4_2	PF08281.7	gi|385803359|ref|YP_005839759.1|	-	0.011	15.1	0.0	0.024	14.0	0.0	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_23	PF13384.1	gi|385803359|ref|YP_005839759.1|	-	0.066	12.8	0.0	0.16	11.6	0.0	1.8	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_10	PF04967.7	gi|385803359|ref|YP_005839759.1|	-	0.084	12.4	0.0	0.25	10.9	0.0	1.8	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Rubredoxin	PF00301.15	gi|385803359|ref|YP_005839759.1|	-	0.57	10.1	5.2	4.2	7.3	0.3	2.5	2	1	0	2	2	2	0	Rubredoxin
PHD	PF00628.24	gi|385803359|ref|YP_005839759.1|	-	2	8.1	6.4	12	5.7	1.8	2.3	1	1	1	2	2	2	0	PHD-finger
MoeA_N	PF03453.12	gi|385803360|ref|YP_005839760.1|	-	0.077	12.3	0.2	0.17	11.2	0.1	1.7	1	1	0	1	1	1	0	MoeA	N-terminal	region	(domain	I	and	II)
AhpC-TSA	PF00578.16	gi|385803361|ref|YP_005839761.1|	-	6.7e-27	93.6	0.0	8.6e-27	93.2	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|385803361|ref|YP_005839761.1|	-	3.1e-13	49.4	0.0	3.6e-13	49.2	0.0	1.1	1	0	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.1	gi|385803361|ref|YP_005839761.1|	-	3.8e-06	26.7	0.0	4.4e-06	26.5	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	antioxidant	enzyme
Phospho_p8	PF10195.4	gi|385803361|ref|YP_005839761.1|	-	0.084	12.7	0.0	0.15	11.9	0.0	1.3	1	0	0	1	1	1	0	DNA-binding	nuclear	phosphoprotein	p8
Big_1	PF02369.11	gi|385803362|ref|YP_005839762.1|	-	0.042	13.7	2.5	0.13	12.2	1.5	2.1	2	0	0	2	2	2	0	Bacterial	Ig-like	domain	(group	1)
Myco_19_kDa	PF05481.7	gi|385803362|ref|YP_005839762.1|	-	0.11	12.3	1.3	0.18	11.5	0.1	1.9	2	0	0	2	2	2	0	Mycobacterium	19	kDa	lipoprotein	antigen
RtcB	PF01139.12	gi|385803363|ref|YP_005839763.1|	-	2.5e-109	366.0	0.0	3.2e-109	365.7	0.0	1.1	1	0	0	1	1	1	1	tRNA-splicing	ligase	RtcB
MRAP	PF15183.1	gi|385803365|ref|YP_005839765.1|	-	0.024	14.2	0.1	0.026	14.1	0.1	1.1	1	0	0	1	1	1	0	Melanocortin-2	receptor	accessory	protein	family
SdpI	PF13630.1	gi|385803365|ref|YP_005839765.1|	-	0.046	13.4	0.6	0.051	13.2	0.4	1.1	1	0	0	1	1	1	0	SdpI/YhfL	protein	family
adh_short	PF00106.20	gi|385803366|ref|YP_005839766.1|	-	1.1e-36	126.3	1.9	1.5e-36	125.8	1.3	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|385803366|ref|YP_005839766.1|	-	1.2e-20	74.3	0.1	1.5e-20	73.9	0.1	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|385803366|ref|YP_005839766.1|	-	4.3e-19	68.8	0.6	5.2e-19	68.5	0.4	1.1	1	0	0	1	1	1	1	KR	domain
NAD_binding_10	PF13460.1	gi|385803366|ref|YP_005839766.1|	-	4.3e-10	39.9	2.5	9.4e-10	38.7	1.7	1.5	1	1	0	1	1	1	1	NADH(P)-binding
Epimerase	PF01370.16	gi|385803366|ref|YP_005839766.1|	-	8.5e-05	22.0	0.4	0.00079	18.9	0.1	2.2	2	1	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
THF_DHG_CYH_C	PF02882.14	gi|385803366|ref|YP_005839766.1|	-	0.00032	19.7	0.1	0.0006	18.9	0.1	1.5	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
Eno-Rase_NADH_b	PF12242.3	gi|385803366|ref|YP_005839766.1|	-	0.0036	17.0	0.1	0.0036	17.0	0.1	2.1	3	0	0	3	3	3	1	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
Shikimate_DH	PF01488.15	gi|385803366|ref|YP_005839766.1|	-	0.007	16.4	0.1	0.014	15.4	0.0	1.5	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
NmrA	PF05368.8	gi|385803366|ref|YP_005839766.1|	-	0.0092	15.2	1.0	2.8	7.1	0.1	2.4	2	0	0	2	2	2	2	NmrA-like	family
OpuAC	PF04069.7	gi|385803366|ref|YP_005839766.1|	-	0.024	13.9	0.0	0.039	13.2	0.0	1.3	1	0	0	1	1	1	0	Substrate	binding	domain	of	ABC-type	glycine	betaine	transport	system
2-Hacid_dh_C	PF02826.14	gi|385803366|ref|YP_005839766.1|	-	0.027	13.6	0.0	0.045	12.9	0.0	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
HEM4	PF02602.10	gi|385803366|ref|YP_005839766.1|	-	0.067	12.4	0.2	0.22	10.7	0.1	1.8	1	1	1	2	2	2	0	Uroporphyrinogen-III	synthase	HemD
ABC_tran	PF00005.22	gi|385803367|ref|YP_005839767.1|	-	5.1e-32	111.0	0.1	1.3e-31	109.7	0.0	1.7	2	0	0	2	2	1	1	ABC	transporter
ABC_membrane	PF00664.18	gi|385803367|ref|YP_005839767.1|	-	2.8e-23	82.7	8.5	4.3e-23	82.0	5.9	1.2	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
SMC_N	PF02463.14	gi|385803367|ref|YP_005839767.1|	-	4e-06	26.2	1.6	8e-05	21.9	1.0	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.1	gi|385803367|ref|YP_005839767.1|	-	1.1e-05	25.6	1.1	0.0019	18.2	0.1	2.8	2	1	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|385803367|ref|YP_005839767.1|	-	4.4e-05	24.2	0.1	0.00036	21.3	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
MobB	PF03205.9	gi|385803367|ref|YP_005839767.1|	-	0.0053	16.4	0.1	0.011	15.4	0.1	1.5	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_22	PF13401.1	gi|385803367|ref|YP_005839767.1|	-	0.0056	16.8	0.1	0.069	13.2	0.0	2.5	1	1	0	1	1	1	1	AAA	domain
RNA_helicase	PF00910.17	gi|385803367|ref|YP_005839767.1|	-	0.0072	16.4	0.0	0.023	14.8	0.0	1.9	2	0	0	2	2	1	1	RNA	helicase
AAA_24	PF13479.1	gi|385803367|ref|YP_005839767.1|	-	0.0082	15.7	0.0	0.016	14.7	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.7	gi|385803367|ref|YP_005839767.1|	-	0.0097	15.0	0.8	0.024	13.7	0.0	2.0	3	0	0	3	3	3	1	Zeta	toxin
AAA_16	PF13191.1	gi|385803367|ref|YP_005839767.1|	-	0.011	15.7	0.1	0.031	14.2	0.1	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_18	PF13238.1	gi|385803367|ref|YP_005839767.1|	-	0.019	15.2	0.6	0.075	13.3	0.1	2.2	2	1	0	2	2	1	0	AAA	domain
AAA_33	PF13671.1	gi|385803367|ref|YP_005839767.1|	-	0.019	14.8	0.0	0.072	12.9	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.18	gi|385803367|ref|YP_005839767.1|	-	0.033	14.1	0.0	0.21	11.5	0.0	2.3	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
DUF258	PF03193.11	gi|385803367|ref|YP_005839767.1|	-	0.038	13.1	0.0	0.08	12.1	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
PRK	PF00485.13	gi|385803367|ref|YP_005839767.1|	-	0.056	12.9	0.1	0.18	11.3	0.0	1.9	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
DUF87	PF01935.12	gi|385803367|ref|YP_005839767.1|	-	0.06	13.1	0.9	0.21	11.3	0.2	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	DUF87
AAA_29	PF13555.1	gi|385803367|ref|YP_005839767.1|	-	0.095	12.2	0.0	0.24	10.9	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ATP_bind_1	PF03029.12	gi|385803367|ref|YP_005839767.1|	-	0.096	12.2	0.1	0.51	9.8	0.0	2.1	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
FtsK_SpoIIIE	PF01580.13	gi|385803367|ref|YP_005839767.1|	-	0.14	11.6	0.0	0.3	10.5	0.0	1.5	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
N6_N4_Mtase	PF01555.13	gi|385803368|ref|YP_005839768.1|	-	1.1e-41	142.8	2.0	1.3e-41	142.6	1.4	1.0	1	0	0	1	1	1	1	DNA	methylase
Methyltransf_26	PF13659.1	gi|385803368|ref|YP_005839768.1|	-	1.1e-06	28.6	0.0	0.041	13.9	0.0	2.2	2	0	0	2	2	2	2	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|385803368|ref|YP_005839768.1|	-	0.00036	21.0	0.0	0.003	18.1	0.0	2.1	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|385803368|ref|YP_005839768.1|	-	0.0053	16.3	0.0	0.038	13.5	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|385803368|ref|YP_005839768.1|	-	0.03	14.8	0.0	8.5	6.9	0.0	2.4	2	0	0	2	2	2	0	Methyltransferase	domain
Methyltransf_4	PF02390.12	gi|385803368|ref|YP_005839768.1|	-	0.049	12.6	0.0	0.12	11.3	0.0	1.6	1	1	0	1	1	1	0	Putative	methyltransferase
Methyltransf_25	PF13649.1	gi|385803368|ref|YP_005839768.1|	-	0.051	13.9	0.0	0.81	10.0	0.0	2.2	2	0	0	2	2	2	0	Methyltransferase	domain
HABP4_PAI-RBP1	PF04774.10	gi|385803368|ref|YP_005839768.1|	-	5.6	7.5	8.3	6.7	7.2	1.1	2.9	3	0	0	3	3	3	0	Hyaluronan	/	mRNA	binding	family
Cytochrom_C552	PF02335.10	gi|385803369|ref|YP_005839769.1|	-	0.044	12.4	2.7	0.066	11.8	1.9	1.2	1	0	0	1	1	1	0	Cytochrome	c552
RNA_pol_Rpb1_3	PF04983.13	gi|385803369|ref|YP_005839769.1|	-	0.058	13.1	0.0	0.12	12.1	0.0	1.5	1	0	0	1	1	1	0	RNA	polymerase	Rpb1,	domain	3
Aldedh	PF00171.17	gi|385803370|ref|YP_005839770.1|	-	1.2e-172	574.3	0.0	1.4e-172	574.1	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
DDE_5	PF13546.1	gi|385803371|ref|YP_005839771.1|	-	5.5e-20	71.3	0.0	8.7e-20	70.6	0.0	1.2	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.16	gi|385803371|ref|YP_005839771.1|	-	2.8e-17	62.9	0.4	5.2e-17	62.0	0.1	1.6	2	1	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.7	gi|385803371|ref|YP_005839771.1|	-	0.00011	21.3	0.5	0.00045	19.3	0.3	1.8	1	1	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1_6	PF13751.1	gi|385803371|ref|YP_005839771.1|	-	0.01	15.8	0.0	0.035	14.1	0.0	1.9	2	0	0	2	2	2	0	Transposase	DDE	domain
DUF2892	PF11127.3	gi|385803372|ref|YP_005839772.1|	-	2e-17	62.7	1.5	2.6e-17	62.3	1.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2892)
DUF3040	PF11239.3	gi|385803372|ref|YP_005839772.1|	-	0.04	13.9	2.1	0.045	13.8	1.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
DUF3149	PF11346.3	gi|385803372|ref|YP_005839772.1|	-	1.9	8.1	6.3	6.5	6.3	4.3	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3149)
SfsA	PF03749.8	gi|385803373|ref|YP_005839773.1|	-	1.8e-52	177.9	0.0	2.2e-52	177.6	0.0	1.0	1	0	0	1	1	1	1	Sugar	fermentation	stimulation	protein
NMT1	PF09084.6	gi|385803374|ref|YP_005839774.1|	-	3.5e-08	33.3	0.0	5.8e-08	32.5	0.0	1.3	1	0	0	1	1	1	1	NMT1/THI5	like
NMT1_2	PF13379.1	gi|385803374|ref|YP_005839774.1|	-	4.4e-06	26.2	0.0	6e-06	25.8	0.0	1.2	1	0	0	1	1	1	1	NMT1-like	family
SBP_bac_3	PF00497.15	gi|385803374|ref|YP_005839774.1|	-	0.0049	16.1	0.0	0.0081	15.4	0.0	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	3
VitK2_biosynth	PF02621.9	gi|385803374|ref|YP_005839774.1|	-	0.0069	15.6	0.1	0.041	13.0	0.0	2.1	2	0	0	2	2	2	1	Menaquinone	biosynthesis
TAT_signal	PF10518.4	gi|385803374|ref|YP_005839774.1|	-	0.016	15.1	0.0	0.049	13.6	0.0	1.9	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Phosphonate-bd	PF12974.2	gi|385803374|ref|YP_005839774.1|	-	0.052	12.9	0.0	0.067	12.5	0.0	1.3	1	0	0	1	1	1	0	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
BPD_transp_1	PF00528.17	gi|385803375|ref|YP_005839775.1|	-	3.9e-17	62.3	12.9	3.9e-17	62.3	8.9	2.0	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.22	gi|385803376|ref|YP_005839776.1|	-	4.9e-32	111.1	0.0	1.5e-31	109.5	0.0	1.7	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.1	gi|385803376|ref|YP_005839776.1|	-	4e-08	33.5	0.0	2.8e-06	27.5	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|385803376|ref|YP_005839776.1|	-	0.00049	19.3	0.2	0.2	10.8	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
DUF258	PF03193.11	gi|385803376|ref|YP_005839776.1|	-	0.0013	17.9	0.0	0.0022	17.1	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_29	PF13555.1	gi|385803376|ref|YP_005839776.1|	-	0.0042	16.5	0.1	0.0089	15.5	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|385803376|ref|YP_005839776.1|	-	0.0058	16.6	1.3	0.042	13.8	0.9	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.24	gi|385803376|ref|YP_005839776.1|	-	0.0068	16.6	0.2	0.035	14.3	0.1	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
SbcCD_C	PF13558.1	gi|385803376|ref|YP_005839776.1|	-	0.0097	15.8	0.2	0.083	12.8	0.1	2.2	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_19	PF13245.1	gi|385803376|ref|YP_005839776.1|	-	0.019	14.7	0.1	0.09	12.5	0.0	1.9	2	0	0	2	2	2	0	Part	of	AAA	domain
AAA_18	PF13238.1	gi|385803376|ref|YP_005839776.1|	-	0.03	14.6	0.0	0.069	13.4	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
Rad17	PF03215.10	gi|385803376|ref|YP_005839776.1|	-	0.04	12.6	0.0	0.055	12.1	0.0	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
AAA_17	PF13207.1	gi|385803376|ref|YP_005839776.1|	-	0.041	14.7	0.4	0.095	13.5	0.3	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_14	PF13173.1	gi|385803376|ref|YP_005839776.1|	-	0.043	13.7	0.0	0.26	11.2	0.0	2.2	2	1	0	2	2	2	0	AAA	domain
AAA_33	PF13671.1	gi|385803376|ref|YP_005839776.1|	-	0.048	13.5	0.3	0.19	11.6	0.2	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_23	PF13476.1	gi|385803376|ref|YP_005839776.1|	-	0.051	13.8	0.3	0.072	13.4	0.2	1.4	1	1	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.17	gi|385803376|ref|YP_005839776.1|	-	0.055	12.3	0.1	0.088	11.6	0.1	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_15	PF13175.1	gi|385803376|ref|YP_005839776.1|	-	0.068	12.2	0.0	1.2	8.1	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
Mg_chelatase	PF01078.16	gi|385803376|ref|YP_005839776.1|	-	0.085	12.0	0.1	0.5	9.4	0.0	1.9	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
PduV-EutP	PF10662.4	gi|385803376|ref|YP_005839776.1|	-	0.097	12.1	0.0	0.15	11.5	0.0	1.3	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_22	PF13401.1	gi|385803376|ref|YP_005839776.1|	-	0.099	12.7	0.2	0.16	12.1	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
T2SE	PF00437.15	gi|385803376|ref|YP_005839776.1|	-	0.12	11.2	0.0	0.19	10.5	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_25	PF13481.1	gi|385803376|ref|YP_005839776.1|	-	0.14	11.5	0.1	0.85	8.9	0.0	2.0	2	1	0	2	2	2	0	AAA	domain
BPD_transp_1	PF00528.17	gi|385803377|ref|YP_005839777.1|	-	1.1e-14	54.3	18.3	1.1e-14	54.3	12.7	1.9	1	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF2678	PF10856.3	gi|385803377|ref|YP_005839777.1|	-	4.1	7.1	10.1	8.1	6.2	4.3	3.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2678)
AIRC	PF00731.15	gi|385803378|ref|YP_005839778.1|	-	1e-17	63.7	3.8	1.9e-17	62.9	2.7	1.4	1	0	0	1	1	1	1	AIR	carboxylase
QRPTase_C	PF01729.14	gi|385803379|ref|YP_005839779.1|	-	4.4e-20	71.8	0.0	6.2e-20	71.4	0.0	1.2	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.11	gi|385803379|ref|YP_005839779.1|	-	1.1e-05	25.1	0.0	4.6e-05	23.1	0.0	2.1	2	1	0	2	2	2	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
Saccharop_dh	PF03435.13	gi|385803380|ref|YP_005839780.1|	-	4.9e-14	52.0	0.0	7.3e-14	51.5	0.0	1.2	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
NAD_binding_10	PF13460.1	gi|385803380|ref|YP_005839780.1|	-	0.00033	20.7	0.0	0.0032	17.5	0.0	2.3	2	1	0	2	2	2	1	NADH(P)-binding
Epimerase	PF01370.16	gi|385803380|ref|YP_005839780.1|	-	0.00036	20.0	0.0	0.00085	18.8	0.0	1.6	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
5HT_transporter	PF03491.8	gi|385803380|ref|YP_005839780.1|	-	0.039	14.0	0.0	0.13	12.3	0.0	1.9	1	0	0	1	1	1	0	Serotonin	(5-HT)	neurotransmitter	transporter,	N-terminus
3Beta_HSD	PF01073.14	gi|385803380|ref|YP_005839780.1|	-	0.046	12.4	0.0	0.067	11.8	0.0	1.2	1	0	0	1	1	1	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NmrA	PF05368.8	gi|385803380|ref|YP_005839780.1|	-	0.072	12.3	0.0	0.18	11.0	0.0	1.6	1	1	0	1	1	1	0	NmrA-like	family
Polysacc_synt_2	PF02719.10	gi|385803380|ref|YP_005839780.1|	-	0.083	11.7	0.0	0.12	11.2	0.0	1.2	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	protein
Helicase_C_2	PF13307.1	gi|385803381|ref|YP_005839781.1|	-	4.8e-25	88.4	0.0	9e-25	87.5	0.0	1.4	1	0	0	1	1	1	1	Helicase	C-terminal	domain
DEAD_2	PF06733.10	gi|385803381|ref|YP_005839781.1|	-	1.9e-13	50.1	0.1	6.1e-12	45.2	0.0	2.3	2	0	0	2	2	2	1	DEAD_2
DEAD	PF00270.24	gi|385803381|ref|YP_005839781.1|	-	3.7e-07	29.7	0.2	0.02	14.3	0.0	2.7	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
ResIII	PF04851.10	gi|385803381|ref|YP_005839781.1|	-	0.00082	19.2	0.1	0.21	11.4	0.0	2.4	2	0	0	2	2	2	2	Type	III	restriction	enzyme,	res	subunit
AAA_30	PF13604.1	gi|385803381|ref|YP_005839781.1|	-	0.0083	15.7	1.0	0.34	10.4	0.0	2.7	3	0	0	3	3	3	1	AAA	domain
DUF2075	PF09848.4	gi|385803381|ref|YP_005839781.1|	-	0.023	13.6	0.0	1.8	7.4	0.0	2.3	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_19	PF13245.1	gi|385803381|ref|YP_005839781.1|	-	0.066	12.9	0.3	0.2	11.4	0.0	1.9	2	0	0	2	2	2	0	Part	of	AAA	domain
PhoH	PF02562.11	gi|385803381|ref|YP_005839781.1|	-	0.067	12.4	0.0	0.18	11.0	0.0	1.6	1	0	0	1	1	1	0	PhoH-like	protein
AAA_11	PF13086.1	gi|385803381|ref|YP_005839781.1|	-	0.067	12.7	0.0	0.26	10.8	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
Metallophos_2	PF12850.2	gi|385803382|ref|YP_005839782.1|	-	6.2e-05	22.8	0.1	8.1e-05	22.5	0.1	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|385803382|ref|YP_005839782.1|	-	8.6e-05	22.0	2.9	0.0002	20.8	1.8	1.6	1	1	1	2	2	2	1	Calcineurin-like	phosphoesterase
HTH_12	PF08461.5	gi|385803383|ref|YP_005839783.1|	-	0.017	14.8	0.1	0.019	14.6	0.1	1.2	1	0	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
HARE-HTH	PF05066.8	gi|385803383|ref|YP_005839783.1|	-	0.077	13.3	0.0	0.089	13.1	0.0	1.2	1	0	0	1	1	1	0	HB1,	ASXL,	restriction	endonuclease	HTH	domain
Beta-Casp	PF10996.3	gi|385803384|ref|YP_005839784.1|	-	4.6e-23	81.5	0.0	9e-23	80.5	0.0	1.5	1	0	0	1	1	1	1	Beta-Casp	domain
Lactamase_B_2	PF12706.2	gi|385803384|ref|YP_005839784.1|	-	1.1e-14	54.3	0.6	2.3e-13	50.1	0.4	2.3	2	1	0	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|385803384|ref|YP_005839784.1|	-	2e-12	47.1	2.3	4.1e-10	39.6	0.7	2.4	2	0	0	2	2	2	2	Metallo-beta-lactamase	superfamily
RMMBL	PF07521.7	gi|385803384|ref|YP_005839784.1|	-	1.9e-08	33.9	0.1	3.9e-08	32.9	0.0	1.5	1	0	0	1	1	1	1	RNA-metabolising	metallo-beta-lactamase
PDEase_II	PF02112.10	gi|385803384|ref|YP_005839784.1|	-	0.027	13.4	1.0	0.039	12.8	0.1	1.6	2	0	0	2	2	2	0	cAMP	phosphodiesterases	class-II
AIRC	PF00731.15	gi|385803384|ref|YP_005839784.1|	-	0.072	12.3	0.1	0.38	10.0	0.0	2.2	3	0	0	3	3	3	0	AIR	carboxylase
FlgD_ig	PF13860.1	gi|385803385|ref|YP_005839785.1|	-	0.0026	17.4	0.4	0.013	15.1	0.1	2.4	1	1	1	2	2	2	1	FlgD	Ig-like	domain
Flavi_glycoprot	PF00869.15	gi|385803385|ref|YP_005839785.1|	-	0.0047	15.9	0.3	0.0056	15.7	0.2	1.1	1	0	0	1	1	1	1	Flavivirus	glycoprotein,	central	and	dimerisation	domains
CHU_C	PF13585.1	gi|385803385|ref|YP_005839785.1|	-	0.018	14.9	0.0	0.024	14.4	0.0	1.3	1	0	0	1	1	1	0	C-terminal	domain	of	CHU	protein	family
fn3	PF00041.16	gi|385803385|ref|YP_005839785.1|	-	0.042	13.9	1.7	0.061	13.4	0.5	1.7	1	1	1	2	2	2	0	Fibronectin	type	III	domain
DUF3244	PF11589.3	gi|385803385|ref|YP_005839785.1|	-	0.076	12.7	0.2	0.1	12.3	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3244)
I-set	PF07679.11	gi|385803385|ref|YP_005839785.1|	-	0.39	10.6	2.5	0.98	9.3	0.3	2.1	2	0	0	2	2	2	0	Immunoglobulin	I-set	domain
adh_short	PF00106.20	gi|385803387|ref|YP_005839787.1|	-	3.3e-31	108.4	1.9	5.1e-31	107.8	1.3	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|385803387|ref|YP_005839787.1|	-	2.6e-13	50.0	0.4	3.5e-13	49.6	0.3	1.1	1	0	0	1	1	1	1	KR	domain
adh_short_C2	PF13561.1	gi|385803387|ref|YP_005839787.1|	-	4.7e-12	46.1	0.0	6.3e-12	45.7	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
NAD_binding_10	PF13460.1	gi|385803387|ref|YP_005839787.1|	-	6.5e-05	23.0	3.0	0.00033	20.7	2.1	2.0	1	1	0	1	1	1	1	NADH(P)-binding
Eno-Rase_NADH_b	PF12242.3	gi|385803387|ref|YP_005839787.1|	-	0.00041	20.0	0.5	0.001	18.8	0.4	1.7	1	0	0	1	1	1	1	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
Epimerase	PF01370.16	gi|385803387|ref|YP_005839787.1|	-	0.0085	15.5	1.8	0.021	14.2	0.3	2.2	2	1	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
Polysacc_synt_2	PF02719.10	gi|385803387|ref|YP_005839787.1|	-	0.015	14.2	0.0	0.021	13.7	0.0	1.3	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	protein
Shikimate_DH	PF01488.15	gi|385803387|ref|YP_005839787.1|	-	0.021	14.9	0.4	0.061	13.4	0.2	1.8	1	1	1	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|385803387|ref|YP_005839787.1|	-	0.04	13.0	0.1	0.064	12.3	0.1	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
THF_DHG_CYH_C	PF02882.14	gi|385803387|ref|YP_005839787.1|	-	0.043	12.8	0.4	0.08	12.0	0.3	1.4	1	0	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
DFP	PF04127.10	gi|385803387|ref|YP_005839787.1|	-	0.24	11.0	1.9	0.46	10.0	1.3	1.5	1	1	0	1	1	1	0	DNA	/	pantothenate	metabolism	flavoprotein
Lysine_decarbox	PF03641.9	gi|385803388|ref|YP_005839788.1|	-	6.5e-10	38.9	0.1	9.2e-10	38.4	0.1	1.2	1	0	0	1	1	1	1	Possible	lysine	decarboxylase
Nuc_deoxyrib_tr	PF05014.10	gi|385803388|ref|YP_005839788.1|	-	0.0098	15.7	0.0	0.012	15.4	0.0	1.2	1	0	0	1	1	1	1	Nucleoside	2-deoxyribosyltransferase
DNA_processg_A	PF02481.10	gi|385803388|ref|YP_005839788.1|	-	0.012	14.4	0.7	0.13	11.1	0.7	1.9	1	1	1	2	2	2	0	DNA	recombination-mediator	protein	A
AA_kinase	PF00696.23	gi|385803388|ref|YP_005839788.1|	-	0.055	12.9	0.1	0.08	12.4	0.1	1.2	1	0	0	1	1	1	0	Amino	acid	kinase	family
DAGK_cat	PF00781.19	gi|385803388|ref|YP_005839788.1|	-	1.3	8.4	6.2	4.4	6.7	0.3	2.4	2	1	0	2	2	2	0	Diacylglycerol	kinase	catalytic	domain
Fer2	PF00111.22	gi|385803389|ref|YP_005839789.1|	-	6.9e-15	54.5	0.3	1.1e-14	53.8	0.2	1.3	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.1	gi|385803389|ref|YP_005839789.1|	-	0.05	13.4	0.1	0.096	12.5	0.1	1.5	1	1	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
GIDE	PF12483.3	gi|385803390|ref|YP_005839790.1|	-	6.7e-06	25.5	0.1	0.016	14.5	0.0	2.4	2	0	0	2	2	2	2	E3	Ubiquitin	ligase
Polysacc_synt_2	PF02719.10	gi|385803391|ref|YP_005839791.1|	-	0.1	11.4	0.0	0.11	11.3	0.0	1.0	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.1	gi|385803392|ref|YP_005839792.1|	-	1.9e-20	73.6	1.6	2.4e-20	73.3	0.3	1.7	2	0	0	2	2	2	1	NADH(P)-binding
NmrA	PF05368.8	gi|385803392|ref|YP_005839792.1|	-	3.1e-12	46.2	0.0	4.6e-12	45.6	0.0	1.2	1	0	0	1	1	1	1	NmrA-like	family
Epimerase	PF01370.16	gi|385803392|ref|YP_005839792.1|	-	5.2e-08	32.6	0.1	1.1e-07	31.5	0.0	1.8	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|385803392|ref|YP_005839792.1|	-	0.00012	20.8	0.0	0.00017	20.3	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_4	PF07993.7	gi|385803392|ref|YP_005839792.1|	-	0.00073	18.5	0.0	0.0038	16.1	0.0	2.0	2	0	0	2	2	2	1	Male	sterility	protein
Semialdhyde_dh	PF01118.19	gi|385803392|ref|YP_005839792.1|	-	0.016	15.4	0.0	0.034	14.4	0.0	1.5	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
RmlD_sub_bind	PF04321.12	gi|385803392|ref|YP_005839792.1|	-	0.023	13.5	0.0	0.2	10.5	0.0	2.0	2	0	0	2	2	2	0	RmlD	substrate	binding	domain
DapB_N	PF01113.15	gi|385803392|ref|YP_005839792.1|	-	0.058	13.3	0.0	0.13	12.2	0.0	1.6	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
ApbA	PF02558.11	gi|385803392|ref|YP_005839792.1|	-	0.096	12.1	0.1	0.17	11.3	0.0	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Methyltransf_11	PF08241.7	gi|385803394|ref|YP_005839794.1|	-	9.9e-15	54.8	0.0	1.8e-14	53.9	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|385803394|ref|YP_005839794.1|	-	1.2e-13	51.0	0.0	1.8e-13	50.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|385803394|ref|YP_005839794.1|	-	4.8e-11	42.4	0.2	0.00032	20.3	0.0	2.6	2	1	0	2	2	2	2	Methyltransferase	domain
Methyltransf_8	PF05148.10	gi|385803394|ref|YP_005839794.1|	-	8e-10	38.7	0.0	1.4e-09	37.9	0.0	1.3	1	0	0	1	1	1	1	Hypothetical	methyltransferase
Methyltransf_18	PF12847.2	gi|385803394|ref|YP_005839794.1|	-	8.1e-07	29.6	0.6	5.4e-05	23.7	0.2	2.8	2	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|385803394|ref|YP_005839794.1|	-	3.9e-06	26.9	0.1	2.5e-05	24.2	0.0	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|385803394|ref|YP_005839794.1|	-	8.4e-05	22.8	0.3	0.0043	17.3	0.1	2.6	2	1	0	2	2	2	1	Methyltransferase	domain
CMAS	PF02353.15	gi|385803394|ref|YP_005839794.1|	-	0.00018	20.7	0.1	0.0005	19.2	0.0	1.7	2	1	0	2	2	2	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_12	PF08242.7	gi|385803394|ref|YP_005839794.1|	-	0.0004	20.7	0.0	0.012	16.0	0.0	2.6	1	1	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|385803394|ref|YP_005839794.1|	-	0.016	14.5	0.1	0.027	13.8	0.1	1.4	1	0	0	1	1	1	0	Methyltransferase	small	domain
PrmA	PF06325.8	gi|385803394|ref|YP_005839794.1|	-	0.065	12.3	0.8	0.16	11.0	0.4	1.9	1	1	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_29	PF03141.11	gi|385803394|ref|YP_005839794.1|	-	0.086	11.1	0.0	0.093	11.0	0.0	1.2	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
MetW	PF07021.7	gi|385803394|ref|YP_005839794.1|	-	0.15	11.4	0.0	0.23	10.7	0.0	1.4	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Radical_SAM	PF04055.16	gi|385803395|ref|YP_005839795.1|	-	5.9e-23	81.8	0.0	9.3e-23	81.2	0.0	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|385803395|ref|YP_005839795.1|	-	4.4e-08	33.1	0.0	9.1e-08	32.1	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|385803395|ref|YP_005839795.1|	-	9.4e-07	29.0	0.0	1.7e-06	28.2	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Thioredoxin_3	PF13192.1	gi|385803396|ref|YP_005839796.1|	-	2.6e-05	23.9	0.0	3.2e-05	23.6	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin	domain
AhpC-TSA	PF00578.16	gi|385803397|ref|YP_005839797.1|	-	1.2e-17	63.7	0.0	1.5e-17	63.4	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|385803397|ref|YP_005839797.1|	-	5.7e-11	42.1	0.0	7.2e-11	41.8	0.0	1.1	1	0	0	1	1	1	1	Redoxin
UvdE	PF03851.9	gi|385803398|ref|YP_005839798.1|	-	5.3e-50	169.9	0.0	6.3e-50	169.7	0.0	1.0	1	0	0	1	1	1	1	UV-endonuclease	UvdE
AP_endonuc_2	PF01261.19	gi|385803398|ref|YP_005839798.1|	-	3.8e-05	23.0	0.0	5.4e-05	22.5	0.0	1.3	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
zinc-ribbons_6	PF07191.7	gi|385803399|ref|YP_005839799.1|	-	0.011	15.4	3.2	0.012	15.3	2.2	1.1	1	0	0	1	1	1	0	zinc-ribbons
Fer2_4	PF13510.1	gi|385803399|ref|YP_005839799.1|	-	0.021	14.6	2.4	0.024	14.4	1.7	1.1	1	0	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
zf-tcix	PF14952.1	gi|385803399|ref|YP_005839799.1|	-	0.059	12.7	0.8	0.089	12.1	0.6	1.3	1	0	0	1	1	1	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-RanBP	PF00641.13	gi|385803399|ref|YP_005839799.1|	-	0.095	11.8	2.9	0.43	9.7	2.0	2.0	1	1	0	1	1	1	0	Zn-finger	in	Ran	binding	protein	and	others
DZR	PF12773.2	gi|385803399|ref|YP_005839799.1|	-	0.23	11.2	5.8	0.35	10.7	4.0	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
PolC_DP2	PF03833.8	gi|385803399|ref|YP_005839799.1|	-	0.38	8.3	2.2	0.36	8.4	1.6	1.0	1	0	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
zf-HIT	PF04438.11	gi|385803399|ref|YP_005839799.1|	-	0.78	9.4	5.9	0.68	9.6	0.6	2.2	2	0	0	2	2	2	0	HIT	zinc	finger
zf-C4_Topoisom	PF01396.14	gi|385803399|ref|YP_005839799.1|	-	0.9	9.0	4.3	12	5.5	0.2	2.6	2	1	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Gin	PF10764.4	gi|385803399|ref|YP_005839799.1|	-	1.4	8.6	5.7	2.6	7.8	3.9	1.6	1	1	0	1	1	1	0	Inhibitor	of	sigma-G	Gin
HypA	PF01155.14	gi|385803400|ref|YP_005839800.1|	-	0.00044	19.9	0.9	0.00044	19.9	0.6	1.1	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
DZR	PF12773.2	gi|385803400|ref|YP_005839800.1|	-	0.00064	19.4	0.7	0.00074	19.2	0.5	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|385803400|ref|YP_005839800.1|	-	0.0035	16.4	2.5	0.006	15.7	1.7	1.5	1	1	0	1	1	1	1	zinc-ribbon	domain
zf-RING_4	PF14570.1	gi|385803400|ref|YP_005839800.1|	-	0.0048	16.4	0.4	0.0063	16.0	0.3	1.2	1	0	0	1	1	1	1	RING/Ubox	like	zinc-binding	domain
DUF1936	PF09151.5	gi|385803400|ref|YP_005839800.1|	-	0.0063	15.9	1.7	1.6	8.3	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF1936)
DnaJ_CXXCXGXG	PF00684.14	gi|385803400|ref|YP_005839800.1|	-	0.011	15.7	1.1	0.013	15.5	0.7	1.3	1	0	0	1	1	1	0	DnaJ	central	domain
Prim_Zn_Ribbon	PF08273.7	gi|385803400|ref|YP_005839800.1|	-	0.013	15.6	1.0	0.76	9.8	0.1	2.1	2	0	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
Nudix_N_2	PF14803.1	gi|385803400|ref|YP_005839800.1|	-	0.017	14.8	1.9	1.5	8.6	0.1	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
zf-C3HC4_3	PF13920.1	gi|385803400|ref|YP_005839800.1|	-	0.019	14.6	0.3	0.021	14.4	0.2	1.1	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
Zn-ribbon_8	PF09723.5	gi|385803400|ref|YP_005839800.1|	-	0.019	14.8	4.2	0.1	12.5	3.1	1.8	1	1	1	2	2	2	0	Zinc	ribbon	domain
Rubredoxin	PF00301.15	gi|385803400|ref|YP_005839800.1|	-	0.029	14.2	1.9	0.063	13.1	1.3	1.6	1	1	0	1	1	1	0	Rubredoxin
zf-IS66	PF13005.2	gi|385803400|ref|YP_005839800.1|	-	0.03	14.2	6.1	0.14	12.1	0.6	2.1	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zinc_ribbon_2	PF13240.1	gi|385803400|ref|YP_005839800.1|	-	0.037	13.5	4.3	0.093	12.2	3.0	1.7	1	1	0	1	1	1	0	zinc-ribbon	domain
zf-TFIIB	PF13453.1	gi|385803400|ref|YP_005839800.1|	-	0.056	12.6	3.0	0.14	11.3	0.2	2.1	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
RE_MamI	PF09567.5	gi|385803400|ref|YP_005839800.1|	-	0.059	12.4	0.1	0.06	12.3	0.1	1.0	1	0	0	1	1	1	0	MamI	restriction	endonuclease
Zn_Tnp_IS1595	PF12760.2	gi|385803400|ref|YP_005839800.1|	-	0.059	13.1	0.9	0.68	9.7	0.1	2.0	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|385803400|ref|YP_005839800.1|	-	0.06	13.0	1.0	0.068	12.8	0.7	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.7	gi|385803400|ref|YP_005839800.1|	-	0.064	12.5	7.1	0.6	9.4	0.6	2.1	1	1	1	2	2	2	0	TFIIB	zinc-binding
zf-ISL3	PF14690.1	gi|385803400|ref|YP_005839800.1|	-	0.076	13.0	1.4	0.45	10.5	0.1	2.0	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
GCC2_GCC3	PF07699.8	gi|385803400|ref|YP_005839800.1|	-	0.079	12.5	1.7	0.12	11.9	1.2	1.3	1	1	0	1	1	1	0	GCC2	and	GCC3
zinc-ribbons_6	PF07191.7	gi|385803400|ref|YP_005839800.1|	-	0.082	12.7	0.3	0.096	12.4	0.2	1.2	1	0	0	1	1	1	0	zinc-ribbons
DNA_RNApol_7kD	PF03604.8	gi|385803400|ref|YP_005839800.1|	-	0.083	12.3	4.6	0.13	11.7	3.2	1.3	1	0	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
DUF1272	PF06906.6	gi|385803400|ref|YP_005839800.1|	-	0.088	12.6	2.2	0.14	11.9	1.5	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
Prok-RING_1	PF14446.1	gi|385803400|ref|YP_005839800.1|	-	0.088	12.5	2.9	1.9	8.3	0.1	1.8	1	1	0	2	2	2	0	Prokaryotic	RING	finger	family	1
DUF2072	PF09845.4	gi|385803400|ref|YP_005839800.1|	-	0.091	12.6	2.0	0.11	12.4	1.4	1.1	1	0	0	1	1	1	0	Zn-ribbon	containing	protein	(DUF2072)
NOB1_Zn_bind	PF08772.6	gi|385803400|ref|YP_005839800.1|	-	0.1	12.4	0.5	0.13	12.1	0.4	1.2	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
PhnA_Zn_Ribbon	PF08274.7	gi|385803400|ref|YP_005839800.1|	-	0.13	12.1	3.0	6.3	6.6	0.3	2.1	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
DUF35_N	PF12172.3	gi|385803400|ref|YP_005839800.1|	-	0.14	12.1	3.2	3	7.8	0.3	2.1	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-C4_Topoisom	PF01396.14	gi|385803400|ref|YP_005839800.1|	-	0.16	11.5	1.3	0.19	11.2	0.1	1.7	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Ogr_Delta	PF04606.7	gi|385803400|ref|YP_005839800.1|	-	0.18	11.4	0.7	0.18	11.4	0.5	1.8	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
zf-MYND	PF01753.13	gi|385803400|ref|YP_005839800.1|	-	0.21	11.4	2.1	0.26	11.1	1.5	1.1	1	0	0	1	1	1	0	MYND	finger
A2L_zn_ribbon	PF08792.5	gi|385803400|ref|YP_005839800.1|	-	0.23	10.9	1.7	8.2	6.0	0.1	2.1	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
GFA	PF04828.9	gi|385803400|ref|YP_005839800.1|	-	0.27	11.2	2.4	6.9	6.6	0.1	2.0	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
PADR1	PF08063.7	gi|385803400|ref|YP_005839800.1|	-	0.77	9.1	3.2	9	5.7	0.3	2.0	1	1	1	2	2	2	0	PADR1	(NUC008)	domain
YhfH	PF14149.1	gi|385803400|ref|YP_005839800.1|	-	0.8	9.5	4.0	9	6.1	0.3	2.1	1	1	1	2	2	2	0	YhfH-like	protein
Zn_ribbon_recom	PF13408.1	gi|385803400|ref|YP_005839800.1|	-	1.1	9.6	5.7	0.64	10.3	0.5	2.1	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
UPF0547	PF10571.4	gi|385803400|ref|YP_005839800.1|	-	1.4	8.6	4.7	8.6	6.1	0.5	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Lar_restr_allev	PF14354.1	gi|385803400|ref|YP_005839800.1|	-	1.5	9.2	4.2	11	6.4	0.1	2.0	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
Peptidase_M28	PF04389.12	gi|385803401|ref|YP_005839801.1|	-	6.6e-27	94.3	1.2	9.9e-27	93.8	0.8	1.3	1	0	0	1	1	1	1	Peptidase	family	M28
Peptidase_M20	PF01546.23	gi|385803401|ref|YP_005839801.1|	-	2.7e-07	30.2	0.1	4e-07	29.7	0.1	1.3	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
PA	PF02225.17	gi|385803401|ref|YP_005839801.1|	-	1.8e-06	27.5	0.0	4.3e-06	26.3	0.0	1.7	2	0	0	2	2	2	1	PA	domain
Peptidase_M42	PF05343.9	gi|385803401|ref|YP_005839801.1|	-	0.0011	17.8	0.1	0.0017	17.1	0.1	1.3	1	0	0	1	1	1	1	M42	glutamyl	aminopeptidase
CPDase	PF07823.6	gi|385803402|ref|YP_005839802.1|	-	4.2e-25	88.4	0.1	6.6e-25	87.7	0.1	1.3	1	0	0	1	1	1	1	Cyclic	phosphodiesterase-like	protein
2_5_RNA_ligase2	PF13563.1	gi|385803402|ref|YP_005839802.1|	-	5.1e-08	32.7	0.0	8.1e-08	32.1	0.0	1.4	1	1	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
LigT_PEase	PF02834.11	gi|385803402|ref|YP_005839802.1|	-	0.041	13.8	0.0	0.072	13.0	0.0	1.4	1	0	0	1	1	1	0	LigT	like	Phosphoesterase
KRBA1	PF15287.1	gi|385803403|ref|YP_005839803.1|	-	0.061	12.6	1.6	0.099	12.0	0.9	1.6	1	1	0	1	1	1	0	KRBA1	family	repeat
DUF4141	PF13605.1	gi|385803403|ref|YP_005839803.1|	-	0.1	11.8	0.0	0.13	11.4	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4141)
DUF4231	PF14015.1	gi|385803403|ref|YP_005839803.1|	-	0.25	11.3	1.6	0.25	11.3	1.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4231)
HCV_NS4a	PF01006.15	gi|385803403|ref|YP_005839803.1|	-	7.5	6.1	6.4	11	5.6	4.5	1.2	1	0	0	1	1	1	0	Hepatitis	C	virus	non-structural	protein	NS4a
CARDB	PF07705.6	gi|385803404|ref|YP_005839804.1|	-	1.7e-13	50.4	16.3	9.2e-06	25.6	0.2	4.5	3	1	0	4	4	4	3	CARDB
Transglut_C	PF00927.17	gi|385803404|ref|YP_005839804.1|	-	2.8e-07	30.5	0.5	0.0011	18.9	0.1	4.3	4	0	0	4	4	4	1	Transglutaminase	family,	C-terminal	ig	like	domain
NPCBM_assoc	PF10633.4	gi|385803404|ref|YP_005839804.1|	-	0.00012	22.0	0.9	0.00012	22.0	0.6	5.7	5	2	0	5	5	5	2	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
ABC_tran	PF00005.22	gi|385803405|ref|YP_005839805.1|	-	4.4e-34	117.7	0.0	6.1e-34	117.2	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385803405|ref|YP_005839805.1|	-	8.8e-11	42.3	0.1	5.6e-05	23.2	0.0	2.3	2	1	0	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|385803405|ref|YP_005839805.1|	-	9.1e-05	21.9	0.1	0.00016	21.0	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.1	gi|385803405|ref|YP_005839805.1|	-	9.5e-05	22.5	0.1	0.00053	20.1	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
DUF258	PF03193.11	gi|385803405|ref|YP_005839805.1|	-	0.00034	19.8	0.0	0.00055	19.1	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_16	PF13191.1	gi|385803405|ref|YP_005839805.1|	-	0.00068	19.6	0.2	0.0019	18.2	0.1	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_17	PF13207.1	gi|385803405|ref|YP_005839805.1|	-	0.00095	19.9	0.1	0.0021	18.8	0.1	1.7	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|385803405|ref|YP_005839805.1|	-	0.0041	16.3	0.1	0.73	9.0	0.1	2.2	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_25	PF13481.1	gi|385803405|ref|YP_005839805.1|	-	0.006	16.0	0.1	0.14	11.5	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.1	gi|385803405|ref|YP_005839805.1|	-	0.006	16.1	0.1	0.091	12.3	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_10	PF12846.2	gi|385803405|ref|YP_005839805.1|	-	0.015	14.7	0.0	0.026	13.9	0.0	1.4	1	0	0	1	1	1	0	AAA-like	domain
MobB	PF03205.9	gi|385803405|ref|YP_005839805.1|	-	0.016	14.8	0.0	0.061	13.0	0.0	2.0	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
MMR_HSR1	PF01926.18	gi|385803405|ref|YP_005839805.1|	-	0.026	14.4	0.1	0.043	13.7	0.1	1.8	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_18	PF13238.1	gi|385803405|ref|YP_005839805.1|	-	0.027	14.7	0.0	0.089	13.0	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
T2SE	PF00437.15	gi|385803405|ref|YP_005839805.1|	-	0.03	13.2	0.0	0.046	12.6	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_33	PF13671.1	gi|385803405|ref|YP_005839805.1|	-	0.03	14.2	0.0	0.052	13.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_23	PF13476.1	gi|385803405|ref|YP_005839805.1|	-	0.033	14.5	0.1	0.05	13.9	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.12	gi|385803405|ref|YP_005839805.1|	-	0.064	12.6	0.0	0.14	11.5	0.0	1.5	2	0	0	2	2	1	0	IstB-like	ATP	binding	protein
AAA_19	PF13245.1	gi|385803405|ref|YP_005839805.1|	-	0.082	12.6	0.2	0.32	10.7	0.0	2.1	2	0	0	2	2	2	0	Part	of	AAA	domain
NTPase_1	PF03266.10	gi|385803405|ref|YP_005839805.1|	-	0.087	12.5	0.1	7.4	6.2	0.0	2.2	2	0	0	2	2	2	0	NTPase
Arch_ATPase	PF01637.13	gi|385803405|ref|YP_005839805.1|	-	0.14	11.8	0.0	0.25	11.0	0.0	1.4	1	0	0	1	1	1	0	Archaeal	ATPase
Dynamin_N	PF00350.18	gi|385803405|ref|YP_005839805.1|	-	0.14	11.9	0.2	0.43	10.3	0.0	1.9	2	0	0	2	2	2	0	Dynamin	family
IIGP	PF05049.8	gi|385803405|ref|YP_005839805.1|	-	0.14	10.8	0.0	0.21	10.3	0.0	1.2	1	0	0	1	1	1	0	Interferon-inducible	GTPase	(IIGP)
MacB_PCD	PF12704.2	gi|385803406|ref|YP_005839806.1|	-	1.6e-22	80.2	6.9	1.6e-22	80.2	4.8	2.5	3	0	0	3	3	3	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.16	gi|385803406|ref|YP_005839806.1|	-	5.9e-17	61.5	11.8	5.9e-17	61.5	8.2	2.1	2	0	0	2	2	2	1	FtsX-like	permease	family
TauE	PF01925.14	gi|385803406|ref|YP_005839806.1|	-	0.00043	19.8	13.1	0.00043	19.8	9.1	2.2	2	0	0	2	2	2	2	Sulfite	exporter	TauE/SafE
RPE65	PF03055.10	gi|385803407|ref|YP_005839807.1|	-	1.9e-109	366.4	0.0	2.1e-109	366.3	0.0	1.0	1	0	0	1	1	1	1	Retinal	pigment	epithelial	membrane	protein
PHP	PF02811.14	gi|385803408|ref|YP_005839808.1|	-	2.8e-12	46.7	0.1	6.6e-12	45.5	0.1	1.6	1	1	0	1	1	1	1	PHP	domain
PHP_C	PF13263.1	gi|385803408|ref|YP_005839808.1|	-	0.0028	17.1	0.0	0.0087	15.5	0.0	1.8	1	0	0	1	1	1	1	PHP-associated
DUF2075	PF09848.4	gi|385803409|ref|YP_005839809.1|	-	5.6e-106	354.4	0.2	7.3e-106	354.0	0.1	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_19	PF13245.1	gi|385803409|ref|YP_005839809.1|	-	7.4e-08	32.0	0.0	1.7e-07	30.8	0.0	1.6	1	0	0	1	1	1	1	Part	of	AAA	domain
KaiC	PF06745.8	gi|385803409|ref|YP_005839809.1|	-	3e-06	26.5	0.2	6.9e-06	25.3	0.1	1.6	1	0	0	1	1	1	1	KaiC
ResIII	PF04851.10	gi|385803409|ref|YP_005839809.1|	-	5.1e-06	26.4	0.5	0.023	14.5	0.0	2.9	1	1	1	2	2	2	2	Type	III	restriction	enzyme,	res	subunit
AAA	PF00004.24	gi|385803409|ref|YP_005839809.1|	-	1.8e-05	24.9	0.3	0.0001	22.5	0.2	2.3	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|385803409|ref|YP_005839809.1|	-	6.8e-05	23.0	0.1	0.0005	20.2	0.1	2.5	1	1	0	1	1	1	1	AAA	domain
GvpD	PF07088.6	gi|385803409|ref|YP_005839809.1|	-	0.0017	16.7	0.0	0.003	15.9	0.0	1.3	1	0	0	1	1	1	1	GvpD	gas	vesicle	protein
IstB_IS21	PF01695.12	gi|385803409|ref|YP_005839809.1|	-	0.0022	17.4	0.0	0.0042	16.5	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_11	PF13086.1	gi|385803409|ref|YP_005839809.1|	-	0.0089	15.6	0.1	0.039	13.5	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
UvrD-helicase	PF00580.16	gi|385803409|ref|YP_005839809.1|	-	0.01	15.1	1.5	0.017	14.4	0.0	1.9	2	0	0	2	2	2	0	UvrD/REP	helicase	N-terminal	domain
AAA_30	PF13604.1	gi|385803409|ref|YP_005839809.1|	-	0.015	14.8	0.0	0.026	14.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Torsin	PF06309.6	gi|385803409|ref|YP_005839809.1|	-	0.022	14.6	0.0	0.075	12.9	0.0	2.0	1	0	0	1	1	1	0	Torsin
TIP49	PF06068.8	gi|385803409|ref|YP_005839809.1|	-	0.022	13.4	0.0	0.038	12.6	0.0	1.3	1	0	0	1	1	1	0	TIP49	C-terminus
Sigma54_activat	PF00158.21	gi|385803409|ref|YP_005839809.1|	-	0.032	13.6	0.0	0.1	12.0	0.0	1.9	1	1	0	1	1	1	0	Sigma-54	interaction	domain
AAA_14	PF13173.1	gi|385803409|ref|YP_005839809.1|	-	0.033	14.0	0.3	0.91	9.4	0.2	2.8	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.1	gi|385803409|ref|YP_005839809.1|	-	0.044	13.1	0.0	0.13	11.6	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.1	gi|385803409|ref|YP_005839809.1|	-	0.049	13.6	0.0	0.13	12.2	0.0	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_28	PF13521.1	gi|385803409|ref|YP_005839809.1|	-	0.054	13.4	0.0	0.13	12.1	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.1	gi|385803409|ref|YP_005839809.1|	-	0.062	13.6	0.3	0.77	10.0	0.0	2.8	2	1	0	2	2	2	0	AAA	domain
T2SE	PF00437.15	gi|385803409|ref|YP_005839809.1|	-	0.069	12.0	0.0	0.17	10.7	0.0	1.6	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
Mg_chelatase	PF01078.16	gi|385803409|ref|YP_005839809.1|	-	0.11	11.6	0.0	0.3	10.2	0.0	1.6	1	1	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
NUDIX	PF00293.23	gi|385803410|ref|YP_005839810.1|	-	6.1e-21	74.4	0.1	7.1e-21	74.2	0.0	1.0	1	0	0	1	1	1	1	NUDIX	domain
NUDIX_4	PF14815.1	gi|385803410|ref|YP_005839810.1|	-	0.009	15.4	0.0	0.014	14.8	0.0	1.2	1	0	0	1	1	1	1	NUDIX	domain
Pterin_4a	PF01329.14	gi|385803411|ref|YP_005839811.1|	-	1.1e-28	98.8	1.4	1.2e-28	98.6	1.0	1.0	1	0	0	1	1	1	1	Pterin	4	alpha	carbinolamine	dehydratase
Alpha-amylase	PF00128.19	gi|385803412|ref|YP_005839812.1|	-	1.5e-47	162.5	0.0	2.1e-47	162.0	0.0	1.1	1	0	0	1	1	1	1	Alpha	amylase,	catalytic	domain
Exonuc_VII_S	PF02609.11	gi|385803413|ref|YP_005839813.1|	-	2.5e-09	36.7	2.1	3.1e-09	36.4	1.4	1.1	1	0	0	1	1	1	1	Exonuclease	VII	small	subunit
UBN2_2	PF14227.1	gi|385803413|ref|YP_005839813.1|	-	0.084	12.4	0.1	0.1	12.1	0.1	1.2	1	0	0	1	1	1	0	gag-polypeptide	of	LTR	copia-type
Exonuc_VII_L	PF02601.10	gi|385803414|ref|YP_005839814.1|	-	4e-51	174.0	2.3	5.5e-51	173.6	1.6	1.1	1	0	0	1	1	1	1	Exonuclease	VII,	large	subunit
tRNA_anti_2	PF13742.1	gi|385803414|ref|YP_005839814.1|	-	5.7e-20	71.0	0.1	1.9e-19	69.3	0.0	1.9	2	0	0	2	2	2	1	OB-fold	nucleic	acid	binding	domain
FbpA	PF05833.6	gi|385803414|ref|YP_005839814.1|	-	0.0017	16.9	0.2	0.0028	16.2	0.1	1.3	1	0	0	1	1	1	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
DUF3584	PF12128.3	gi|385803414|ref|YP_005839814.1|	-	0.013	12.9	5.0	0.018	12.3	3.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
tRNA_anti-codon	PF01336.20	gi|385803414|ref|YP_005839814.1|	-	0.013	15.3	0.0	0.026	14.3	0.0	1.5	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
CLP_protease	PF00574.18	gi|385803414|ref|YP_005839814.1|	-	0.015	15.0	0.4	0.082	12.5	0.2	2.2	1	1	0	1	1	1	0	Clp	protease
Rho_Binding	PF08912.6	gi|385803414|ref|YP_005839814.1|	-	0.12	12.7	5.0	0.086	13.1	0.8	2.3	1	1	1	2	2	2	0	Rho	Binding
Kinetocho_Slk19	PF12709.2	gi|385803414|ref|YP_005839814.1|	-	0.25	11.4	3.8	0.67	10.0	2.6	1.7	1	0	0	1	1	1	0	Central	kinetochore-associated
DUF1311	PF07007.7	gi|385803414|ref|YP_005839814.1|	-	0.76	9.9	5.0	16	5.6	0.3	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1311)
DUF1611	PF07755.6	gi|385803415|ref|YP_005839815.1|	-	9.6e-112	372.5	0.5	1.1e-111	372.2	0.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1611)
AAA_26	PF13500.1	gi|385803415|ref|YP_005839815.1|	-	0.02	14.5	0.4	0.74	9.3	0.0	2.5	2	1	0	3	3	3	0	AAA	domain
CbiA	PF01656.18	gi|385803415|ref|YP_005839815.1|	-	0.063	12.6	0.4	0.53	9.6	0.3	2.1	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Endonuclease_5	PF04493.9	gi|385803415|ref|YP_005839815.1|	-	0.071	12.4	0.0	0.13	11.6	0.0	1.3	1	0	0	1	1	1	0	Endonuclease	V
MR_MLE	PF01188.16	gi|385803416|ref|YP_005839816.1|	-	6.1e-15	55.5	2.5	6.8e-15	55.3	0.7	2.0	2	0	0	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	C-terminal	domain
MR_MLE_C	PF13378.1	gi|385803416|ref|YP_005839816.1|	-	2.8e-14	53.0	0.2	2e-13	50.2	0.1	2.3	2	0	0	2	2	2	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.11	gi|385803416|ref|YP_005839816.1|	-	1.4e-11	44.4	0.1	4.6e-11	42.7	0.0	1.8	2	0	0	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
Lactamase_B_2	PF12706.2	gi|385803417|ref|YP_005839817.1|	-	1.7e-27	96.2	0.1	2.3e-27	95.7	0.1	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|385803417|ref|YP_005839817.1|	-	1.1e-14	54.5	0.1	9.8e-14	51.4	0.1	2.0	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.1	gi|385803417|ref|YP_005839817.1|	-	0.0017	18.1	0.0	0.004	16.8	0.0	1.9	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_4	PF13691.1	gi|385803417|ref|YP_005839817.1|	-	0.05	13.0	0.0	0.11	12.0	0.0	1.5	1	0	0	1	1	1	0	tRNase	Z	endonuclease
MIT	PF04212.13	gi|385803418|ref|YP_005839818.1|	-	0.0055	16.5	3.3	0.039	13.8	0.9	3.5	2	0	0	2	2	2	1	MIT	(microtubule	interacting	and	transport)	domain
DUF1771	PF08590.5	gi|385803418|ref|YP_005839818.1|	-	3.2	7.8	10.0	1.6	8.7	0.4	3.7	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF1771)
Rhodanese	PF00581.15	gi|385803419|ref|YP_005839819.1|	-	7.1e-30	103.6	0.0	3.3e-14	53.1	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
NESP55	PF06390.7	gi|385803420|ref|YP_005839820.1|	-	0.017	14.5	3.0	0.017	14.4	2.1	1.2	1	0	0	1	1	1	0	Neuroendocrine-specific	golgi	protein	P55	(NESP55)
Peptidase_S49	PF01343.13	gi|385803421|ref|YP_005839821.1|	-	2.8e-41	140.8	0.0	4.6e-41	140.1	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	S49
DUF1009	PF06230.6	gi|385803421|ref|YP_005839821.1|	-	0.0058	16.0	0.0	0.0099	15.2	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1009)
SDH_sah	PF01972.11	gi|385803421|ref|YP_005839821.1|	-	0.011	14.5	0.0	0.02	13.6	0.0	1.4	1	0	0	1	1	1	0	Serine	dehydrogenase	proteinase
CLP_protease	PF00574.18	gi|385803421|ref|YP_005839821.1|	-	0.012	15.2	0.0	3.8	7.1	0.0	2.4	2	0	0	2	2	2	0	Clp	protease
DICT	PF10069.4	gi|529167404|ref|YP_005839822.2|	-	1.6e-12	47.0	0.0	2.4e-12	46.4	0.0	1.3	1	0	0	1	1	1	1	Sensory	domain	found	in	DIguanylate	Cyclases	&	Two-component	systems
zf-ribbon_3	PF13248.1	gi|385803423|ref|YP_005839823.1|	-	2.9e-05	23.1	2.9	3.8e-05	22.7	2.0	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|385803423|ref|YP_005839823.1|	-	5.4e-05	22.9	1.5	6.6e-05	22.6	1.1	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|385803423|ref|YP_005839823.1|	-	0.0036	16.7	5.1	0.0054	16.1	3.5	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|385803423|ref|YP_005839823.1|	-	0.0063	16.4	4.3	1.6	8.7	3.0	2.1	1	1	1	2	2	2	2	Zinc	ribbon	domain
Prok-RING_1	PF14446.1	gi|385803423|ref|YP_005839823.1|	-	0.007	16.0	0.8	0.008	15.8	0.6	1.1	1	0	0	1	1	1	1	Prokaryotic	RING	finger	family	1
HypA	PF01155.14	gi|385803423|ref|YP_005839823.1|	-	0.021	14.5	0.5	0.024	14.3	0.4	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Lar_restr_allev	PF14354.1	gi|385803423|ref|YP_005839823.1|	-	0.029	14.6	2.6	1.3	9.3	0.2	2.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
TFIIS_C	PF01096.13	gi|385803423|ref|YP_005839823.1|	-	0.032	13.8	0.6	2.1	8.0	0.0	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zinc_ribbon_5	PF13719.1	gi|385803423|ref|YP_005839823.1|	-	0.048	13.2	1.0	0.97	9.0	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C3HC4_3	PF13920.1	gi|385803423|ref|YP_005839823.1|	-	0.049	13.3	0.3	0.054	13.1	0.2	1.1	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-RING_5	PF14634.1	gi|385803423|ref|YP_005839823.1|	-	0.057	13.1	1.2	0.077	12.7	0.8	1.2	1	0	0	1	1	1	0	zinc-RING	finger	domain
DnaJ_CXXCXGXG	PF00684.14	gi|385803423|ref|YP_005839823.1|	-	0.061	13.3	0.6	0.082	12.9	0.4	1.3	1	0	0	1	1	1	0	DnaJ	central	domain
zinc_ribbon_4	PF13717.1	gi|385803423|ref|YP_005839823.1|	-	0.07	12.8	1.0	1.2	8.8	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc-ribbons_6	PF07191.7	gi|385803423|ref|YP_005839823.1|	-	0.079	12.7	0.5	0.095	12.4	0.3	1.1	1	0	0	1	1	1	0	zinc-ribbons
Stc1	PF12898.2	gi|385803423|ref|YP_005839823.1|	-	0.085	12.9	0.1	0.086	12.9	0.1	1.1	1	0	0	1	1	1	0	Stc1	domain
zf-trcl	PF13451.1	gi|385803423|ref|YP_005839823.1|	-	0.085	12.4	1.6	1.3	8.7	0.1	2.1	2	0	0	2	2	2	0	Probable	zinc-binding	domain
Ribosomal_L37e	PF01907.14	gi|385803423|ref|YP_005839823.1|	-	0.1	12.3	0.8	0.15	11.8	0.5	1.3	1	1	0	1	1	1	0	Ribosomal	protein	L37e
DNA_RNApol_7kD	PF03604.8	gi|385803423|ref|YP_005839823.1|	-	0.12	11.8	1.5	0.78	9.2	0.0	2.1	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Zn_Tnp_IS1595	PF12760.2	gi|385803423|ref|YP_005839823.1|	-	0.14	11.9	2.4	0.95	9.3	0.1	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
A2L_zn_ribbon	PF08792.5	gi|385803423|ref|YP_005839823.1|	-	0.22	10.9	4.3	3.4	7.2	3.0	2.1	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
UPF0547	PF10571.4	gi|385803423|ref|YP_005839823.1|	-	0.38	10.5	3.6	12	5.7	0.0	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Elf1	PF05129.8	gi|385803423|ref|YP_005839823.1|	-	0.39	10.4	1.9	2.5	7.8	1.8	1.8	1	1	1	2	2	2	0	Transcription	elongation	factor	Elf1	like
DUF1272	PF06906.6	gi|385803423|ref|YP_005839823.1|	-	0.48	10.3	5.3	1.1	9.1	3.7	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
Nudix_N_2	PF14803.1	gi|385803423|ref|YP_005839823.1|	-	0.49	10.1	2.8	16	5.2	1.0	2.4	2	1	1	3	3	2	0	Nudix	N-terminal
DUF35_N	PF12172.3	gi|385803423|ref|YP_005839823.1|	-	0.53	10.2	2.3	1.1	9.2	1.6	1.5	1	1	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-C4_Topoisom	PF01396.14	gi|385803423|ref|YP_005839823.1|	-	0.66	9.5	3.3	1.3	8.5	0.2	2.1	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
RNA_POL_M_15KD	PF02150.11	gi|385803423|ref|YP_005839823.1|	-	1	9.1	5.2	2.8	7.7	0.3	2.4	2	1	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf-IS66	PF13005.2	gi|385803423|ref|YP_005839823.1|	-	1	9.3	6.6	2.3	8.2	1.2	2.2	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Sgf11	PF08209.6	gi|385803423|ref|YP_005839823.1|	-	1.7	7.9	4.9	2.5	7.4	0.2	2.1	1	1	1	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
zf-Mss51	PF13824.1	gi|385803423|ref|YP_005839823.1|	-	2.7	7.9	5.2	4.3	7.2	0.1	2.1	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
TF_Zn_Ribbon	PF08271.7	gi|385803423|ref|YP_005839823.1|	-	2.9	7.2	6.0	5	6.5	0.6	2.1	1	1	1	2	2	2	0	TFIIB	zinc-binding
zf-RING_3	PF14369.1	gi|385803423|ref|YP_005839823.1|	-	5	7.2	6.0	26	4.9	4.1	2.0	1	1	0	1	1	1	0	zinc-finger
MoCF_biosynth	PF00994.19	gi|385803424|ref|YP_005839824.1|	-	1.6e-32	111.9	0.3	2.4e-32	111.3	0.2	1.3	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
HAD	PF12710.2	gi|385803425|ref|YP_005839825.1|	-	7.5e-13	49.0	0.2	1.1e-12	48.5	0.1	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|385803425|ref|YP_005839825.1|	-	0.039	14.3	0.0	0.089	13.1	0.0	1.7	1	1	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
SecA_SW	PF07516.8	gi|385803425|ref|YP_005839825.1|	-	0.069	12.8	0.4	0.13	11.9	0.3	1.6	1	1	0	1	1	1	0	SecA	Wing	and	Scaffold	domain
DDE_5	PF13546.1	gi|385803427|ref|YP_005839827.1|	-	5.5e-20	71.3	0.0	8.7e-20	70.6	0.0	1.2	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.16	gi|385803427|ref|YP_005839827.1|	-	2.8e-17	62.9	0.4	5.2e-17	62.0	0.1	1.6	2	1	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.7	gi|385803427|ref|YP_005839827.1|	-	0.00011	21.3	0.5	0.00045	19.3	0.3	1.8	1	1	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1_6	PF13751.1	gi|385803427|ref|YP_005839827.1|	-	0.01	15.8	0.0	0.035	14.1	0.0	1.9	2	0	0	2	2	2	0	Transposase	DDE	domain
Pro_CA	PF00484.14	gi|385803428|ref|YP_005839828.1|	-	1.1e-24	87.2	0.1	1.7e-24	86.5	0.0	1.4	2	0	0	2	2	2	1	Carbonic	anhydrase
Lbh	PF15317.1	gi|385803428|ref|YP_005839828.1|	-	0.07	13.3	0.0	0.21	11.8	0.0	1.8	1	0	0	1	1	1	0	Cardiac	transcription	factor	regulator,	Developmental	protein
Amidohydro_1	PF01979.15	gi|385803429|ref|YP_005839829.1|	-	6.2e-40	137.8	0.7	7.8e-40	137.5	0.5	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_4	PF13147.1	gi|385803429|ref|YP_005839829.1|	-	1.2e-16	61.6	0.1	7.2e-16	59.0	0.1	2.0	1	1	0	1	1	1	1	Amidohydrolase
Amidohydro_3	PF07969.6	gi|385803429|ref|YP_005839829.1|	-	9.7e-16	57.9	8.0	3.5e-15	56.1	2.1	2.2	1	1	1	2	2	2	2	Amidohydrolase	family
Amidohydro_5	PF13594.1	gi|385803429|ref|YP_005839829.1|	-	3.4e-12	46.0	0.4	1.1e-11	44.3	0.3	2.0	1	0	0	1	1	1	1	Amidohydrolase
Baculo_LEF5_C	PF11792.3	gi|385803429|ref|YP_005839829.1|	-	0.085	12.2	0.1	0.21	10.9	0.1	1.6	1	0	0	1	1	1	0	Baculoviridae	late	expression	factor	5	C-terminal	domain
ABC_tran	PF00005.22	gi|385803430|ref|YP_005839830.1|	-	6.4e-46	156.0	0.1	1.5e-29	102.9	0.0	2.3	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.1	gi|385803430|ref|YP_005839830.1|	-	1.6e-14	54.5	0.4	4.7e-13	49.7	0.3	2.4	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.1	gi|385803430|ref|YP_005839830.1|	-	1.1e-05	24.6	0.1	0.051	12.6	0.0	2.2	1	1	1	2	2	2	2	AAA	ATPase	domain
AAA_10	PF12846.2	gi|385803430|ref|YP_005839830.1|	-	0.00025	20.5	0.4	0.95	8.8	0.0	3.3	3	0	0	3	3	3	1	AAA-like	domain
AAA_16	PF13191.1	gi|385803430|ref|YP_005839830.1|	-	0.00026	21.0	0.4	0.12	12.3	0.0	3.0	3	0	0	3	3	3	1	AAA	ATPase	domain
Bac_DnaA	PF00308.13	gi|385803430|ref|YP_005839830.1|	-	0.0027	17.3	0.1	0.007	16.0	0.1	1.7	1	0	0	1	1	1	1	Bacterial	dnaA	protein
SMC_N	PF02463.14	gi|385803430|ref|YP_005839830.1|	-	0.0044	16.2	0.7	2	7.5	0.0	2.5	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.1	gi|385803430|ref|YP_005839830.1|	-	0.0063	16.6	0.1	4.4	7.4	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|385803430|ref|YP_005839830.1|	-	0.014	14.8	0.1	0.014	14.8	0.1	2.0	3	0	0	3	3	3	0	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|385803430|ref|YP_005839830.1|	-	0.035	13.2	1.2	0.12	11.5	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
AAA_23	PF13476.1	gi|385803430|ref|YP_005839830.1|	-	0.087	13.1	0.0	0.18	12.1	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.12	gi|385803430|ref|YP_005839830.1|	-	1.1	8.5	3.2	1.1	8.6	0.1	2.4	3	0	0	3	3	3	0	IstB-like	ATP	binding	protein
BPD_transp_2	PF02653.11	gi|385803431|ref|YP_005839831.1|	-	1.4e-36	125.8	35.0	1.4e-36	125.8	24.3	1.7	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
ASF1_hist_chap	PF04729.8	gi|385803431|ref|YP_005839831.1|	-	0.17	11.5	0.0	0.26	10.9	0.0	1.2	1	0	0	1	1	1	0	ASF1	like	histone	chaperone
BPD_transp_2	PF02653.11	gi|385803432|ref|YP_005839832.1|	-	5.2e-40	137.1	30.8	7e-40	136.6	21.4	1.2	1	1	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
Bmp	PF02608.9	gi|385803433|ref|YP_005839833.1|	-	4.3e-41	140.6	0.0	5.9e-41	140.1	0.0	1.0	1	0	0	1	1	1	1	Basic	membrane	protein
TAT_signal	PF10518.4	gi|385803433|ref|YP_005839833.1|	-	0.13	12.3	2.2	0.33	11.0	1.6	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Fer2_2	PF01799.15	gi|385803434|ref|YP_005839834.1|	-	2.3e-28	97.8	1.0	2.9e-28	97.5	0.0	1.6	2	0	0	2	2	2	1	[2Fe-2S]	binding	domain
Fer2_3	PF13085.1	gi|385803434|ref|YP_005839834.1|	-	8.3e-06	25.6	0.1	1.3e-05	24.9	0.0	1.4	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2	PF00111.22	gi|385803434|ref|YP_005839834.1|	-	4.6e-05	23.0	0.5	4.6e-05	23.0	0.4	1.8	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Ald_Xan_dh_C2	PF02738.13	gi|385803435|ref|YP_005839835.1|	-	4.8e-118	394.8	0.0	6e-118	394.5	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.17	gi|385803435|ref|YP_005839835.1|	-	2.6e-22	79.0	0.0	6.2e-22	77.7	0.0	1.7	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
FAD_binding_5	PF00941.16	gi|385803436|ref|YP_005839836.1|	-	3.1e-43	147.1	0.0	4.2e-43	146.7	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain	in	molybdopterin	dehydrogenase
CO_deh_flav_C	PF03450.12	gi|385803436|ref|YP_005839836.1|	-	4.4e-12	45.8	0.1	7.5e-12	45.1	0.1	1.4	1	0	0	1	1	1	1	CO	dehydrogenase	flavoprotein	C-terminal	domain
Xan_ur_permease	PF00860.15	gi|385803437|ref|YP_005839837.1|	-	1.2e-92	310.4	45.0	1.2e-92	310.4	31.2	1.5	2	0	0	2	2	2	1	Permease	family
OHCU_decarbox	PF09349.5	gi|385803438|ref|YP_005839838.1|	-	4.4e-50	170.0	3.4	4.9e-50	169.9	2.4	1.0	1	0	0	1	1	1	1	OHCU	decarboxylase
Atg31	PF09795.4	gi|385803438|ref|YP_005839838.1|	-	0.025	14.2	0.5	0.041	13.5	0.3	1.4	1	0	0	1	1	1	0	Autophagy-related	protein	31
DUF4558	PF15104.1	gi|385803438|ref|YP_005839838.1|	-	0.12	12.3	1.7	0.35	10.8	0.1	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4558)
Uricase	PF01014.13	gi|385803439|ref|YP_005839839.1|	-	8.7e-37	126.2	0.0	2.8e-18	66.3	0.0	2.0	2	0	0	2	2	2	2	Uricase
FolB	PF02152.13	gi|385803439|ref|YP_005839839.1|	-	0.0035	17.4	0.0	1.1	9.4	0.0	2.2	2	0	0	2	2	2	2	Dihydroneopterin	aldolase
Transthyretin	PF00576.16	gi|385803440|ref|YP_005839840.1|	-	5.2e-36	122.9	0.0	5.8e-36	122.7	0.0	1.0	1	0	0	1	1	1	1	HIUase/Transthyretin	family
CarboxypepD_reg	PF13620.1	gi|385803440|ref|YP_005839840.1|	-	0.00099	19.1	0.2	0.0024	17.9	0.1	1.7	1	1	0	1	1	1	1	Carboxypeptidase	regulatory-like	domain
Peptidase_M20	PF01546.23	gi|385803441|ref|YP_005839841.1|	-	7.6e-20	71.2	0.2	1.1e-19	70.7	0.2	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|385803441|ref|YP_005839841.1|	-	5.8e-12	45.3	0.6	1.1e-11	44.4	0.4	1.4	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.12	gi|385803441|ref|YP_005839841.1|	-	7.7e-08	32.2	0.0	1.4e-07	31.4	0.0	1.4	1	0	0	1	1	1	1	Peptidase	family	M28
Amidohydro_1	PF01979.15	gi|385803442|ref|YP_005839842.1|	-	1.9e-45	155.9	1.3	2.4e-45	155.6	0.9	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_4	PF13147.1	gi|385803442|ref|YP_005839842.1|	-	4.7e-15	56.3	2.1	8.2e-15	55.5	1.4	1.4	1	1	0	1	1	1	1	Amidohydrolase
A_deaminase	PF00962.17	gi|385803442|ref|YP_005839842.1|	-	0.0015	17.5	0.0	0.0036	16.2	0.0	1.6	2	0	0	2	2	2	1	Adenosine/AMP	deaminase
Amidohydro_5	PF13594.1	gi|385803442|ref|YP_005839842.1|	-	0.0026	17.5	0.5	0.0026	17.5	0.3	2.5	2	0	0	2	2	2	1	Amidohydrolase
Amidohydro_4	PF13147.1	gi|385803443|ref|YP_005839843.1|	-	6.4e-27	95.2	3.8	8.1e-27	94.9	2.7	1.1	1	0	0	1	1	1	1	Amidohydrolase
Amidohydro_1	PF01979.15	gi|385803443|ref|YP_005839843.1|	-	3.5e-16	59.7	0.2	2.7e-14	53.5	0.0	3.1	2	1	0	2	2	2	1	Amidohydrolase	family
Amidohydro_5	PF13594.1	gi|385803443|ref|YP_005839843.1|	-	1.1e-09	37.9	0.9	1.1e-09	37.9	0.6	2.3	3	0	0	3	3	3	1	Amidohydrolase
Amidohydro_3	PF07969.6	gi|385803443|ref|YP_005839843.1|	-	1.8e-09	37.3	1.5	1.8e-05	24.1	0.1	2.9	1	1	0	2	2	2	2	Amidohydrolase	family
DUF3830	PF12903.2	gi|385803444|ref|YP_005839844.1|	-	3.1e-38	130.4	0.0	3.7e-38	130.2	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3830)
Pribosyltran	PF00156.22	gi|385803445|ref|YP_005839845.1|	-	1.7e-19	69.8	0.4	2.2e-19	69.4	0.3	1.1	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.1	gi|385803445|ref|YP_005839845.1|	-	0.0082	15.3	0.1	0.013	14.7	0.0	1.3	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.1	gi|385803445|ref|YP_005839845.1|	-	0.077	12.2	0.2	0.11	11.7	0.1	1.3	1	0	0	1	1	1	0	Phosphoribosyl	transferase
2-Hacid_dh_C	PF02826.14	gi|385803447|ref|YP_005839847.1|	-	1.1e-49	168.0	0.0	5.4e-48	162.4	0.0	2.2	1	1	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.25	gi|385803447|ref|YP_005839847.1|	-	3.5e-18	65.3	0.0	4.2e-18	65.0	0.0	1.1	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
VWA	PF00092.23	gi|385803450|ref|YP_005839850.1|	-	3.1e-11	43.3	0.2	3.7e-11	43.0	0.1	1.2	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_2	PF13519.1	gi|385803450|ref|YP_005839850.1|	-	4.5e-11	43.1	1.9	8.2e-11	42.3	1.3	1.5	1	1	0	1	1	1	1	von	Willebrand	factor	type	A	domain
vWA-TerF-like	PF10138.4	gi|385803450|ref|YP_005839850.1|	-	0.00075	19.3	1.3	0.056	13.2	0.9	2.3	1	1	0	1	1	1	1	vWA	found	in	TerF	C	terminus
VWA_CoxE	PF05762.9	gi|385803450|ref|YP_005839850.1|	-	0.035	13.2	0.5	0.1	11.6	0.3	1.9	1	1	0	1	1	1	0	VWA	domain	containing	CoxE-like	protein
DUF1194	PF06707.6	gi|385803450|ref|YP_005839850.1|	-	0.041	12.8	0.1	0.041	12.8	0.1	2.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1194)
DUF973	PF06157.6	gi|385803452|ref|YP_005839852.1|	-	0.11	11.3	3.6	0.12	11.2	2.5	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF973)
2TM	PF13239.1	gi|385803452|ref|YP_005839852.1|	-	2.5	8.2	4.4	0.79	9.8	1.2	1.7	1	1	0	1	1	1	0	2TM	domain
Big_3_4	PF13754.1	gi|385803453|ref|YP_005839853.1|	-	0.05	13.9	1.3	0.05	13.9	0.9	2.9	3	0	0	3	3	3	0	Bacterial	Ig-like	domain	(group	3)
Nterm_IS4	PF13006.2	gi|385803454|ref|YP_005839854.1|	-	0.0065	16.4	0.1	0.0087	16.0	0.1	1.2	1	0	0	1	1	1	1	Insertion	element	4	transposase	N-terminal
DUF1129	PF06570.6	gi|385803454|ref|YP_005839854.1|	-	0.048	12.9	4.0	0.053	12.8	2.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1129)
BPD_transp_1	PF00528.17	gi|385803454|ref|YP_005839854.1|	-	0.33	10.4	4.9	0.38	10.2	3.4	1.1	1	0	0	1	1	1	0	Binding-protein-dependent	transport	system	inner	membrane	component
2TM	PF13239.1	gi|385803454|ref|YP_005839854.1|	-	3.4	7.7	6.3	12	6.0	4.3	1.9	1	1	0	1	1	1	0	2TM	domain
DUF3353	PF11833.3	gi|385803457|ref|YP_005839857.1|	-	0.042	13.3	3.6	0.055	12.9	2.5	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3353)
SdpI	PF13630.1	gi|385803457|ref|YP_005839857.1|	-	0.12	12.1	1.1	0.16	11.6	0.3	1.6	1	1	1	2	2	2	0	SdpI/YhfL	protein	family
Yip1	PF04893.12	gi|385803457|ref|YP_005839857.1|	-	0.6	9.5	5.8	2.2	7.7	4.0	1.8	1	1	0	1	1	1	0	Yip1	domain
DUF1469	PF07332.6	gi|385803457|ref|YP_005839857.1|	-	0.71	9.6	4.3	0.38	10.5	1.4	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1469)
YiaAB	PF05360.9	gi|385803457|ref|YP_005839857.1|	-	7.1	6.2	9.8	0.72	9.4	2.1	2.2	2	0	0	2	2	2	0	yiaA/B	two	helix	domain
DUF2721	PF11026.3	gi|385803457|ref|YP_005839857.1|	-	9.7	5.8	9.9	1.7	8.2	3.1	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2721)
DRP	PF06044.7	gi|385803458|ref|YP_005839858.1|	-	1.4e-11	43.8	1.1	1.7e-11	43.6	0.8	1.1	1	0	0	1	1	1	1	Dam-replacing	family
Fic	PF02661.13	gi|385803458|ref|YP_005839858.1|	-	0.078	13.6	0.4	0.11	13.1	0.3	1.2	1	0	0	1	1	1	0	Fic/DOC	family
DUF3221	PF11518.3	gi|385803458|ref|YP_005839858.1|	-	0.12	12.0	1.0	0.22	11.1	0.1	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3221)
DDE_Tnp_IS1595	PF12762.2	gi|385803461|ref|YP_005839861.1|	-	1.9e-23	82.9	0.0	3e-23	82.3	0.0	1.2	1	0	0	1	1	1	1	ISXO2-like	transposase	domain
Zn_Tnp_IS1595	PF12760.2	gi|385803461|ref|YP_005839861.1|	-	1.5e-10	40.6	4.8	2.9e-10	39.7	3.3	1.5	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Zn_Tnp_IS1	PF03811.8	gi|385803461|ref|YP_005839861.1|	-	1.3e-05	24.5	6.4	3.3e-05	23.2	4.5	1.7	1	0	0	1	1	1	1	InsA	N-terminal	domain
DUF2089	PF09862.4	gi|385803461|ref|YP_005839861.1|	-	0.026	14.3	0.0	0.04	13.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2089)
Auxin_inducible	PF02519.9	gi|385803461|ref|YP_005839861.1|	-	0.035	14.1	0.0	0.063	13.3	0.0	1.3	1	0	0	1	1	1	0	Auxin	responsive	protein
zf-ISL3	PF14690.1	gi|385803461|ref|YP_005839861.1|	-	0.11	12.6	8.7	0.19	11.7	0.7	2.8	2	1	1	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-Dof	PF02701.10	gi|385803461|ref|YP_005839861.1|	-	0.11	12.4	3.8	0.2	11.5	2.6	1.4	1	0	0	1	1	1	0	Dof	domain,	zinc	finger
Zn-ribbon_8	PF09723.5	gi|385803461|ref|YP_005839861.1|	-	0.55	10.2	4.7	6.7	6.7	0.4	2.5	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-C2H2_6	PF13912.1	gi|385803461|ref|YP_005839861.1|	-	5	7.1	6.8	1.1	9.2	0.2	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
AAA_23	PF13476.1	gi|385803463|ref|YP_005839863.1|	-	1.2e-13	51.8	22.5	1.2e-13	51.8	15.6	3.3	1	1	0	2	2	1	1	AAA	domain
SMC_N	PF02463.14	gi|385803463|ref|YP_005839863.1|	-	5.7e-08	32.2	0.1	5.7e-08	32.2	0.1	2.3	2	1	0	2	2	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|385803463|ref|YP_005839863.1|	-	8.1e-06	25.2	0.0	1.5e-05	24.3	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_13	PF13166.1	gi|385803463|ref|YP_005839863.1|	-	5.6e-05	21.8	37.1	0.019	13.4	4.6	3.4	3	1	0	3	3	3	3	AAA	domain
AAA_15	PF13175.1	gi|385803463|ref|YP_005839863.1|	-	0.00012	21.2	20.0	0.00012	21.2	13.9	3.4	2	2	0	2	2	1	1	AAA	ATPase	domain
AAA_21	PF13304.1	gi|385803463|ref|YP_005839863.1|	-	0.00057	19.9	18.0	0.0031	17.5	4.8	3.1	2	1	0	2	2	2	2	AAA	domain
Baculo_PEP_C	PF04513.7	gi|385803463|ref|YP_005839863.1|	-	0.015	15.1	12.6	0.44	10.3	0.4	4.0	2	2	1	3	3	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF258	PF03193.11	gi|385803463|ref|YP_005839863.1|	-	0.022	13.9	0.0	0.082	12.0	0.0	2.0	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
SbcCD_C	PF13558.1	gi|385803463|ref|YP_005839863.1|	-	0.031	14.1	0.1	0.13	12.1	0.0	2.1	2	0	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
DUF1786	PF08735.5	gi|385803463|ref|YP_005839863.1|	-	0.053	12.6	2.7	0.1	11.7	1.8	1.4	1	0	0	1	1	1	0	Putative	pyruvate	format-lyase	activating	enzyme	(DUF1786)
ABC_tran	PF00005.22	gi|385803463|ref|YP_005839863.1|	-	0.06	13.6	0.0	0.06	13.6	0.0	3.7	3	1	0	3	3	3	0	ABC	transporter
V_ATPase_I	PF01496.14	gi|385803463|ref|YP_005839863.1|	-	0.14	10.0	24.9	0.2	9.4	8.6	2.3	2	0	0	2	2	2	0	V-type	ATPase	116kDa	subunit	family
IncA	PF04156.9	gi|385803463|ref|YP_005839863.1|	-	1.1	8.7	38.3	0.078	12.5	5.0	3.2	2	1	1	3	3	3	0	IncA	protein
Reo_sigmaC	PF04582.7	gi|385803463|ref|YP_005839863.1|	-	1.3	8.1	3.2	6.8	5.7	0.2	2.3	2	0	0	2	2	2	0	Reovirus	sigma	C	capsid	protein
WXG100	PF06013.7	gi|385803463|ref|YP_005839863.1|	-	2	8.4	10.8	2.9	7.9	0.2	4.8	4	1	1	6	6	6	0	Proteins	of	100	residues	with	WXG
ResIII	PF04851.10	gi|385803465|ref|YP_005839865.1|	-	3.9e-23	82.2	0.7	9.8e-23	80.9	0.0	2.1	3	0	0	3	3	3	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.26	gi|385803465|ref|YP_005839865.1|	-	5.2e-11	42.2	0.1	1.2e-10	41.0	0.1	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.24	gi|385803465|ref|YP_005839865.1|	-	7e-10	38.6	0.0	3.1e-09	36.5	0.0	2.0	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
SNF2_N	PF00176.18	gi|385803465|ref|YP_005839865.1|	-	1.9e-06	26.8	0.0	1e-05	24.5	0.0	2.1	1	1	1	2	2	2	1	SNF2	family	N-terminal	domain
Helicase_C_2	PF13307.1	gi|385803465|ref|YP_005839865.1|	-	0.0016	18.4	0.0	0.0038	17.1	0.0	1.7	1	0	0	1	1	1	1	Helicase	C-terminal	domain
eIF3_N	PF09440.5	gi|385803465|ref|YP_005839865.1|	-	0.0056	16.8	1.7	0.28	11.3	0.0	2.8	1	1	2	3	3	3	1	eIF3	subunit	6	N	terminal	domain
DUF853	PF05872.7	gi|385803465|ref|YP_005839865.1|	-	0.026	12.8	0.0	0.063	11.6	0.1	1.5	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF853)
AAA_22	PF13401.1	gi|385803465|ref|YP_005839865.1|	-	0.064	13.3	0.2	1.7	8.7	0.0	2.7	2	1	0	2	2	2	0	AAA	domain
BRE1	PF08647.6	gi|385803465|ref|YP_005839865.1|	-	0.14	12.1	4.6	0.35	10.8	3.2	1.7	1	0	0	1	1	1	0	BRE1	E3	ubiquitin	ligase
DUF499	PF04465.7	gi|385803466|ref|YP_005839866.1|	-	5.1e-26	90.5	0.2	4.3e-24	84.2	0.0	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF499)
zf-C2H2	PF00096.21	gi|385803466|ref|YP_005839866.1|	-	1.8e-05	24.8	5.3	0.017	15.4	0.2	3.4	3	0	0	3	3	3	2	Zinc	finger,	C2H2	type
zf-C2H2_6	PF13912.1	gi|385803466|ref|YP_005839866.1|	-	8.6e-05	22.3	3.3	0.028	14.3	0.1	2.6	2	0	0	2	2	2	2	C2H2-type	zinc	finger
zf-C2H2_4	PF13894.1	gi|385803466|ref|YP_005839866.1|	-	0.0015	18.7	7.6	0.4	11.1	0.2	3.5	2	1	0	2	2	2	2	C2H2-type	zinc	finger
zf-C2H2_jaz	PF12171.3	gi|385803466|ref|YP_005839866.1|	-	0.0049	16.9	2.4	0.19	11.9	0.2	2.5	2	0	0	2	2	2	1	Zinc-finger	double-stranded	RNA-binding
AAA	PF00004.24	gi|385803466|ref|YP_005839866.1|	-	0.0065	16.6	0.3	0.057	13.6	0.0	2.4	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
zf-C2HC_2	PF13913.1	gi|385803466|ref|YP_005839866.1|	-	0.026	14.2	0.6	0.052	13.2	0.4	1.5	1	0	0	1	1	1	0	zinc-finger	of	a	C2HC-type
U3snoRNP10	PF12397.3	gi|385803466|ref|YP_005839866.1|	-	0.072	13.0	0.1	2	8.4	0.1	2.5	2	0	0	2	2	2	0	U3	small	nucleolar	RNA-associated	protein	10
Methyltransf_26	PF13659.1	gi|385803468|ref|YP_005839868.1|	-	2.9e-08	33.7	0.0	5.8e-07	29.5	0.0	2.5	1	1	0	1	1	1	1	Methyltransferase	domain
DUF1156	PF06634.7	gi|385803468|ref|YP_005839868.1|	-	1.5e-05	24.6	0.0	3.5e-05	23.4	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1156)
UPF0020	PF01170.13	gi|385803468|ref|YP_005839868.1|	-	0.074	12.6	0.0	15	5.1	0.0	2.5	2	0	0	2	2	2	0	Putative	RNA	methylase	family	UPF0020
SNF2_N	PF00176.18	gi|385803469|ref|YP_005839869.1|	-	1.8e-21	76.2	0.1	2.4e-20	72.5	0.0	2.4	3	0	0	3	3	3	1	SNF2	family	N-terminal	domain
Helicase_C	PF00271.26	gi|385803469|ref|YP_005839869.1|	-	1.2e-11	44.3	0.0	3.5e-11	42.8	0.0	1.8	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.24	gi|385803469|ref|YP_005839869.1|	-	0.0055	16.2	0.0	0.03	13.8	0.0	2.3	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
Phage_connect_1	PF05135.8	gi|385803469|ref|YP_005839869.1|	-	0.013	15.6	0.6	0.071	13.2	0.1	2.5	2	0	0	2	2	2	0	Phage	gp6-like	head-tail	connector	protein
TF_Zn_Ribbon	PF08271.7	gi|385803470|ref|YP_005839870.1|	-	0.013	14.8	0.9	0.038	13.2	0.6	1.9	1	0	0	1	1	1	0	TFIIB	zinc-binding
DNA_ligase_ZBD	PF03119.11	gi|385803470|ref|YP_005839870.1|	-	0.033	13.9	0.1	0.11	12.2	0.1	1.8	1	0	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
RNR_N	PF08343.5	gi|385803470|ref|YP_005839870.1|	-	0.066	13.0	2.1	30	4.5	0.0	3.4	3	0	0	3	3	3	0	Ribonucleotide	reductase	N-terminal
Helicase_C	PF00271.26	gi|385803471|ref|YP_005839871.1|	-	9.1e-06	25.4	0.0	2.1e-05	24.3	0.0	1.6	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.24	gi|385803471|ref|YP_005839871.1|	-	0.0033	16.9	0.0	0.61	9.5	0.0	2.4	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
HTH_3	PF01381.17	gi|385803471|ref|YP_005839871.1|	-	0.39	10.5	3.3	24	4.8	0.0	3.3	3	0	0	3	3	3	0	Helix-turn-helix
Transpeptidase	PF00905.17	gi|385803472|ref|YP_005839872.1|	-	0.0097	14.9	0.0	0.021	13.8	0.0	1.5	1	0	0	1	1	1	1	Penicillin	binding	protein	transpeptidase	domain
BpuSI_N	PF15516.1	gi|385803473|ref|YP_005839873.1|	-	0.082	12.5	0.0	0.14	11.8	0.0	1.3	1	0	0	1	1	1	0	BpuSI	N-terminal	domain
RNA_pol_A_bac	PF01000.21	gi|385803473|ref|YP_005839873.1|	-	0.14	12.2	0.0	0.23	11.6	0.0	1.3	1	0	0	1	1	1	0	RNA	polymerase	Rpb3/RpoA	insert	domain
PIN_2	PF10130.4	gi|385803474|ref|YP_005839874.1|	-	1.6e-31	109.0	0.4	1.7e-31	109.0	0.3	1.0	1	0	0	1	1	1	1	PIN	domain
PIN_3	PF13470.1	gi|385803474|ref|YP_005839874.1|	-	1.7e-08	35.1	1.1	2.3e-08	34.7	0.8	1.2	1	0	0	1	1	1	1	PIN	domain
PIN	PF01850.16	gi|385803474|ref|YP_005839874.1|	-	8.9e-05	22.8	3.7	0.00016	22.0	2.6	1.4	1	1	0	1	1	1	1	PIN	domain
UPF0547	PF10571.4	gi|385803476|ref|YP_005839876.1|	-	0.0019	17.8	0.4	0.0094	15.6	0.3	1.8	1	1	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
Rubredoxin	PF00301.15	gi|385803476|ref|YP_005839876.1|	-	0.0064	16.3	0.4	3.3	7.6	0.0	2.2	2	0	0	2	2	2	2	Rubredoxin
zf-TFIIB	PF13453.1	gi|385803476|ref|YP_005839876.1|	-	0.027	13.6	0.7	0.14	11.3	0.5	2.0	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
DZR	PF12773.2	gi|385803476|ref|YP_005839876.1|	-	0.037	13.8	0.2	0.11	12.3	0.1	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
A2L_zn_ribbon	PF08792.5	gi|385803476|ref|YP_005839876.1|	-	0.04	13.3	0.8	3.5	7.2	0.0	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zf-IS66	PF13005.2	gi|385803476|ref|YP_005839876.1|	-	0.049	13.6	1.0	3.4	7.7	0.1	2.3	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
TF_Zn_Ribbon	PF08271.7	gi|385803476|ref|YP_005839876.1|	-	0.068	12.5	0.8	3.4	7.0	0.0	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
Methyltransf_13	PF08421.6	gi|385803476|ref|YP_005839876.1|	-	0.073	12.5	0.5	0.18	11.3	0.0	1.8	2	0	0	2	2	2	0	Putative	zinc	binding	domain
zinc-ribbons_6	PF07191.7	gi|385803476|ref|YP_005839876.1|	-	0.074	12.8	0.4	1	9.1	0.0	2.0	2	0	0	2	2	2	0	zinc-ribbons
Zn_Tnp_IS1595	PF12760.2	gi|385803476|ref|YP_005839876.1|	-	0.11	12.3	0.1	10	5.9	0.0	2.1	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|385803476|ref|YP_005839876.1|	-	0.11	11.6	0.3	3.4	6.9	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Auto_anti-p27	PF06677.7	gi|385803476|ref|YP_005839876.1|	-	0.16	11.7	0.4	5.7	6.7	0.0	2.2	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-C4_Topoisom	PF01396.14	gi|385803476|ref|YP_005839876.1|	-	0.16	11.4	1.0	6.4	6.3	0.0	2.2	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
DUF1610	PF07754.6	gi|385803476|ref|YP_005839876.1|	-	0.17	12.0	0.2	0.17	12.0	0.2	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1610)
DUF2752	PF10825.3	gi|385803476|ref|YP_005839876.1|	-	0.18	11.8	0.1	0.18	11.8	0.0	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2752)
zf-RING_3	PF14369.1	gi|385803476|ref|YP_005839876.1|	-	0.2	11.7	1.5	11	6.1	0.0	2.3	2	0	0	2	2	2	0	zinc-finger
Zn-ribbon_8	PF09723.5	gi|385803476|ref|YP_005839876.1|	-	0.21	11.5	1.0	17	5.4	0.0	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
Xan_ur_permease	PF00860.15	gi|385803483|ref|YP_005839883.1|	-	5.8e-93	311.4	45.1	7.8e-93	311.0	31.3	1.1	1	0	0	1	1	1	1	Permease	family
Abi	PF02517.11	gi|385803484|ref|YP_005839884.1|	-	9.6e-12	44.8	12.2	2.8e-11	43.3	8.5	2.1	1	1	0	1	1	1	1	CAAX	protease	self-immunity
DUF433	PF04255.9	gi|385803486|ref|YP_005839886.1|	-	2e-06	27.0	0.1	3.5e-06	26.3	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF433)
DUF2964	PF11177.3	gi|385803491|ref|YP_005839891.1|	-	5.7	6.9	9.7	3.1	7.7	0.3	3.1	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2964)
RHH_1	PF01402.16	gi|385803492|ref|YP_005839892.1|	-	0.0048	16.7	0.0	0.0076	16.0	0.0	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
Arc	PF03869.9	gi|385803492|ref|YP_005839892.1|	-	0.044	13.4	0.0	0.076	12.6	0.0	1.5	1	0	0	1	1	1	0	Arc-like	DNA	binding	domain
SWIM	PF04434.12	gi|385803494|ref|YP_005839894.1|	-	0.044	13.2	0.2	0.099	12.1	0.1	1.6	1	1	0	1	1	1	0	SWIM	zinc	finger
DUF1469	PF07332.6	gi|385803495|ref|YP_005839895.1|	-	0.02	14.6	5.7	0.026	14.2	3.9	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
DUF3397	PF11877.3	gi|385803496|ref|YP_005839896.1|	-	0.14	12.1	1.0	0.17	11.9	0.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3397)
SecE	PF00584.15	gi|385803496|ref|YP_005839896.1|	-	2.9	7.5	5.4	0.89	9.1	0.3	2.1	2	0	0	2	2	2	0	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
Tom22	PF04281.8	gi|385803497|ref|YP_005839897.1|	-	0.045	13.2	1.2	0.045	13.2	0.8	1.2	1	0	0	1	1	1	0	Mitochondrial	import	receptor	subunit	Tom22
Metallophos	PF00149.23	gi|385803498|ref|YP_005839898.1|	-	2.2e-10	40.2	3.1	3.4e-10	39.6	2.1	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.2	gi|385803498|ref|YP_005839898.1|	-	3.4e-10	39.9	6.6	8e-10	38.7	4.6	1.6	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
AAA_13	PF13166.1	gi|385803499|ref|YP_005839899.1|	-	1.3e-18	66.8	89.0	7.5e-10	37.9	13.6	5.2	2	1	3	5	5	5	5	AAA	domain
AAA_23	PF13476.1	gi|385803499|ref|YP_005839899.1|	-	1.8e-18	67.5	0.0	1.8e-18	67.5	0.0	7.4	1	1	3	4	4	2	1	AAA	domain
AAA_21	PF13304.1	gi|385803499|ref|YP_005839899.1|	-	2.4e-10	40.8	24.6	7.6e-06	26.0	4.9	4.4	1	1	0	2	2	2	2	AAA	domain
SbcCD_C	PF13558.1	gi|385803499|ref|YP_005839899.1|	-	3.5e-09	36.4	0.0	1.4e-08	34.5	0.0	2.1	1	0	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_27	PF13514.1	gi|385803499|ref|YP_005839899.1|	-	2.1e-08	32.3	106.2	0.0021	15.8	20.4	5.2	2	1	3	5	5	5	5	AAA	domain
IncA	PF04156.9	gi|385803499|ref|YP_005839899.1|	-	4.3e-06	26.4	135.2	0.018	14.6	10.8	6.7	1	1	5	6	6	6	4	IncA	protein
Reo_sigmaC	PF04582.7	gi|385803499|ref|YP_005839899.1|	-	4.5e-06	26.0	32.9	0.14	11.3	0.3	5.6	1	1	4	6	6	6	5	Reovirus	sigma	C	capsid	protein
NPV_P10	PF05531.7	gi|385803499|ref|YP_005839899.1|	-	1.4e-05	25.1	61.1	1.7	8.9	0.2	9.9	3	2	4	7	7	7	2	Nucleopolyhedrovirus	P10	protein
AAA_29	PF13555.1	gi|385803499|ref|YP_005839899.1|	-	3.1e-05	23.3	0.0	6.1e-05	22.4	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Rad50_zn_hook	PF04423.9	gi|385803499|ref|YP_005839899.1|	-	9.5e-05	21.7	1.6	9.5e-05	21.7	1.1	8.1	9	2	0	9	9	7	1	Rad50	zinc	hook	motif
Laminin_I	PF06008.9	gi|385803499|ref|YP_005839899.1|	-	0.00026	20.4	6.9	0.00026	20.4	4.8	6.4	2	1	2	5	5	4	1	Laminin	Domain	I
Baculo_PEP_C	PF04513.7	gi|385803499|ref|YP_005839899.1|	-	0.0011	18.7	43.6	0.6	9.9	3.0	7.3	2	2	3	6	6	6	4	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
FliD_N	PF02465.13	gi|385803499|ref|YP_005839899.1|	-	0.0022	18.3	39.2	5.2	7.4	0.2	9.2	2	2	5	7	7	7	0	Flagellar	hook-associated	protein	2	N-terminus
BLOC1_2	PF10046.4	gi|385803499|ref|YP_005839899.1|	-	0.0023	18.0	86.8	0.11	12.6	1.4	10.8	3	3	7	11	11	11	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
LPP	PF04728.8	gi|385803499|ref|YP_005839899.1|	-	0.0027	17.4	31.9	0.73	9.6	0.8	8.2	8	2	0	8	8	7	2	Lipoprotein	leucine-zipper
Laminin_II	PF06009.7	gi|385803499|ref|YP_005839899.1|	-	0.0033	17.1	4.5	0.0033	17.1	3.1	7.2	2	1	4	7	7	7	1	Laminin	Domain	II
Prefoldin_2	PF01920.15	gi|385803499|ref|YP_005839899.1|	-	0.0067	16.1	17.6	0.0067	16.1	12.2	11.1	2	2	6	9	9	6	2	Prefoldin	subunit
DUF1664	PF07889.7	gi|385803499|ref|YP_005839899.1|	-	0.018	14.8	72.4	0.14	11.9	0.4	8.7	3	3	7	10	10	10	0	Protein	of	unknown	function	(DUF1664)
AAA_25	PF13481.1	gi|385803499|ref|YP_005839899.1|	-	0.043	13.2	0.0	0.043	13.2	0.0	4.2	3	1	2	5	5	5	0	AAA	domain
Zn-ribbon_8	PF09723.5	gi|385803499|ref|YP_005839899.1|	-	0.073	13.0	0.2	0.21	11.5	0.2	1.7	1	0	0	1	1	1	0	Zinc	ribbon	domain
zf-TFIIB	PF13453.1	gi|385803499|ref|YP_005839899.1|	-	0.1	11.8	1.3	0.29	10.3	0.2	2.3	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
ABC_tran	PF00005.22	gi|385803499|ref|YP_005839899.1|	-	0.12	12.6	0.0	0.12	12.6	0.0	6.3	2	1	0	2	2	1	0	ABC	transporter
Occludin_ELL	PF07303.8	gi|385803499|ref|YP_005839899.1|	-	0.13	13.0	72.2	1.6	9.4	5.0	7.8	2	2	6	8	8	8	0	Occludin	homology	domain
GAS	PF13851.1	gi|385803499|ref|YP_005839899.1|	-	0.42	9.7	107.4	1.7	7.8	9.2	6.6	1	1	4	6	6	5	0	Growth-arrest	specific	micro-tubule	binding
Seryl_tRNA_N	PF02403.17	gi|385803499|ref|YP_005839899.1|	-	0.49	10.4	108.5	0.19	11.7	4.3	9.4	2	2	6	8	8	7	0	Seryl-tRNA	synthetase	N-terminal	domain
Mnd1	PF03962.10	gi|385803499|ref|YP_005839899.1|	-	0.77	9.3	103.6	0.21	11.2	6.8	7.7	1	1	6	7	7	7	0	Mnd1	family
TPR_MLP1_2	PF07926.7	gi|385803499|ref|YP_005839899.1|	-	0.97	9.1	115.1	0.021	14.5	9.4	6.7	4	2	2	6	6	5	0	TPR/MLP1/MLP2-like	protein
Spc7	PF08317.6	gi|385803499|ref|YP_005839899.1|	-	1.1	7.8	106.1	0.22	10.1	9.4	5.6	1	1	4	5	5	5	0	Spc7	kinetochore	protein
Syntaxin-6_N	PF09177.6	gi|385803499|ref|YP_005839899.1|	-	2.1	8.8	93.3	4.1	7.8	3.9	10.1	1	1	10	11	11	11	0	Syntaxin	6,	N-terminal
TBPIP	PF07106.8	gi|385803499|ref|YP_005839899.1|	-	3.7	7.0	101.4	0.065	12.7	4.2	7.5	1	1	5	7	7	7	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
DUF3584	PF12128.3	gi|385803499|ref|YP_005839899.1|	-	6.6	3.9	113.7	1.2	6.3	13.7	4.6	2	1	0	3	3	3	0	Protein	of	unknown	function	(DUF3584)
CENP-F_leu_zip	PF10473.4	gi|385803499|ref|YP_005839899.1|	-	6.8	6.5	132.0	0.051	13.4	12.9	7.2	1	1	4	6	6	6	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
FliJ	PF02050.11	gi|385803499|ref|YP_005839899.1|	-	7.7	6.5	90.4	0.059	13.4	4.6	7.7	3	2	4	7	7	7	0	Flagellar	FliJ	protein
NurA	PF09376.5	gi|385803500|ref|YP_005839900.1|	-	2.6e-18	66.4	0.0	4.3e-18	65.7	0.0	1.3	1	0	0	1	1	1	1	NurA	domain
Costars	PF14705.1	gi|385803500|ref|YP_005839900.1|	-	0.12	12.4	0.0	0.26	11.2	0.0	1.6	1	0	0	1	1	1	0	Costars
Robl_LC7	PF03259.12	gi|385803500|ref|YP_005839900.1|	-	0.13	11.7	0.0	0.3	10.6	0.0	1.5	1	0	0	1	1	1	0	Roadblock/LC7	domain
DUF2963	PF11178.3	gi|385803500|ref|YP_005839900.1|	-	0.15	11.5	0.0	17	4.9	0.0	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2963)
DUF87	PF01935.12	gi|385803502|ref|YP_005839902.1|	-	9.4e-30	104.1	0.0	1.8e-29	103.2	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF87
AAA_10	PF12846.2	gi|385803502|ref|YP_005839902.1|	-	2e-17	63.6	0.0	6.5e-11	42.2	0.0	2.1	1	1	1	2	2	2	2	AAA-like	domain
DUF853	PF05872.7	gi|385803502|ref|YP_005839902.1|	-	0.0002	19.8	0.0	0.0022	16.4	0.0	2.1	2	0	0	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF853)
TrwB_AAD_bind	PF10412.4	gi|385803502|ref|YP_005839902.1|	-	0.00027	19.6	0.0	0.0021	16.7	0.0	2.0	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
FtsK_SpoIIIE	PF01580.13	gi|385803502|ref|YP_005839902.1|	-	0.00069	19.1	0.0	0.0048	16.3	0.0	2.0	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
HAS-barrel	PF09378.5	gi|385803502|ref|YP_005839902.1|	-	0.016	15.0	0.6	0.033	14.0	0.4	1.6	1	0	0	1	1	1	0	HAS	barrel	domain
Zot	PF05707.7	gi|385803502|ref|YP_005839902.1|	-	0.05	13.0	0.0	0.44	9.9	0.0	2.1	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
T4SS-DNA_transf	PF02534.9	gi|385803502|ref|YP_005839902.1|	-	0.06	11.9	0.0	0.15	10.6	0.0	1.5	2	0	0	2	2	2	0	Type	IV	secretory	system	Conjugative	DNA	transfer
ResIII	PF04851.10	gi|385803502|ref|YP_005839902.1|	-	0.098	12.4	0.0	0.22	11.3	0.0	1.5	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
Tic20	PF09685.5	gi|385803503|ref|YP_005839903.1|	-	2.7e-27	94.8	4.9	3.1e-27	94.7	3.4	1.0	1	0	0	1	1	1	1	Tic20-like	protein
DUF4153	PF13687.1	gi|385803503|ref|YP_005839903.1|	-	0.005	16.3	4.1	0.0084	15.6	2.9	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4153)
DUF1345	PF07077.6	gi|385803503|ref|YP_005839903.1|	-	0.058	12.9	0.6	0.068	12.6	0.4	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1345)
DUF3753	PF12575.3	gi|385803503|ref|YP_005839903.1|	-	2.7	7.8	11.3	0.17	11.6	3.6	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3753)
TMC	PF07810.8	gi|385803503|ref|YP_005839903.1|	-	8	6.9	6.4	26	5.2	4.4	1.7	1	1	0	1	1	1	0	TMC	domain
DUF4397	PF14344.1	gi|385803506|ref|YP_005839906.1|	-	5.5e-97	320.5	26.2	7e-40	136.1	3.1	4.1	3	1	1	4	4	4	4	Domain	of	unknown	function	(DUF4397)
AlgF	PF11182.3	gi|385803506|ref|YP_005839906.1|	-	1.5e-08	34.5	1.1	8.1e-05	22.3	0.1	2.9	2	1	0	2	2	2	2	Alginate	O-acetyl	transferase	AlgF
Sipho_tail	PF05709.6	gi|385803506|ref|YP_005839906.1|	-	2.3e-05	23.6	0.0	0.27	10.3	0.0	3.1	3	0	0	3	3	3	2	Phage	tail	protein
Y_Y_Y	PF07495.8	gi|385803506|ref|YP_005839906.1|	-	0.0075	15.9	0.0	2.9	7.6	0.0	3.3	3	0	0	3	3	3	1	Y_Y_Y	domain
DUF2846	PF11008.3	gi|385803506|ref|YP_005839906.1|	-	0.0088	15.8	0.0	36	4.2	0.0	4.1	3	2	0	4	4	4	0	Protein	of	unknown	function	(DUF2846)
FlgD_ig	PF13860.1	gi|385803506|ref|YP_005839906.1|	-	0.036	13.7	6.4	11	5.8	0.0	4.9	4	1	0	4	4	4	0	FlgD	Ig-like	domain
GDPD	PF03009.12	gi|385803507|ref|YP_005839907.1|	-	8.6e-23	81.1	0.3	1.1e-13	51.2	0.4	2.1	1	1	1	2	2	2	2	Glycerophosphoryl	diester	phosphodiesterase	family
MarR_2	PF12802.2	gi|385803508|ref|YP_005839908.1|	-	2.5e-07	30.2	0.0	3.6e-07	29.7	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.1	gi|385803508|ref|YP_005839908.1|	-	0.0001	22.0	0.0	0.00022	20.9	0.0	1.6	1	1	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Rrf2	PF02082.15	gi|385803508|ref|YP_005839908.1|	-	0.00016	21.7	0.0	0.00027	21.0	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
DUF2250	PF10007.4	gi|385803508|ref|YP_005839908.1|	-	0.00017	21.4	0.0	0.00021	21.1	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
TrmB	PF01978.14	gi|385803508|ref|YP_005839908.1|	-	0.00048	19.7	0.0	0.00081	19.0	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|385803508|ref|YP_005839908.1|	-	0.00051	19.3	0.1	0.0011	18.3	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.1	gi|385803508|ref|YP_005839908.1|	-	0.00065	19.9	0.1	0.0011	19.2	0.1	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.5	gi|385803508|ref|YP_005839908.1|	-	0.0012	18.4	0.0	0.0018	17.7	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|385803508|ref|YP_005839908.1|	-	0.0017	18.2	0.0	0.0035	17.2	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_45	PF14947.1	gi|385803508|ref|YP_005839908.1|	-	0.0018	18.0	0.0	0.0024	17.6	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_36	PF13730.1	gi|385803508|ref|YP_005839908.1|	-	0.0031	17.6	0.0	0.0045	17.0	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|385803508|ref|YP_005839908.1|	-	0.0045	16.5	0.2	0.012	15.2	0.0	1.6	2	0	0	2	2	2	1	Homeodomain-like	domain
MarR	PF01047.17	gi|385803508|ref|YP_005839908.1|	-	0.0047	16.6	0.0	0.0078	15.8	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.7	gi|385803508|ref|YP_005839908.1|	-	0.011	15.3	0.1	0.017	14.7	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
HTH_20	PF12840.2	gi|385803508|ref|YP_005839908.1|	-	0.017	14.9	0.0	0.026	14.3	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
TFIIE_alpha	PF02002.12	gi|385803508|ref|YP_005839908.1|	-	0.026	14.0	0.1	0.05	13.1	0.1	1.4	1	1	0	1	1	1	0	TFIIE	alpha	subunit
PaaX	PF07848.7	gi|385803508|ref|YP_005839908.1|	-	0.052	13.5	0.2	0.13	12.3	0.2	1.6	1	1	0	1	1	1	0	PaaX-like	protein
HTH_29	PF13551.1	gi|385803508|ref|YP_005839908.1|	-	0.054	13.6	0.2	0.065	13.3	0.1	1.2	1	0	0	1	1	1	0	Winged	helix-turn	helix
FeoC	PF09012.5	gi|385803508|ref|YP_005839908.1|	-	0.085	12.5	0.0	0.14	11.9	0.0	1.3	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
HTH_Tnp_ISL3	PF13542.1	gi|385803508|ref|YP_005839908.1|	-	0.12	11.5	0.0	0.2	10.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
z-alpha	PF02295.12	gi|385803508|ref|YP_005839908.1|	-	0.13	12.0	0.0	0.19	11.5	0.0	1.3	1	0	0	1	1	1	0	Adenosine	deaminase	z-alpha	domain
Glyco_tranf_2_4	PF13704.1	gi|385803508|ref|YP_005839908.1|	-	0.67	10.2	7.9	0.53	10.6	1.2	3.0	1	1	1	2	2	2	0	Glycosyl	transferase	family	2
PemK	PF02452.12	gi|385803509|ref|YP_005839909.1|	-	2e-05	24.7	0.0	2.2e-05	24.6	0.0	1.0	1	0	0	1	1	1	1	PemK-like	protein
DUF3368	PF11848.3	gi|385803511|ref|YP_005839911.1|	-	3.8e-13	48.7	0.0	1.9e-12	46.5	0.0	2.1	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF3368)
UPF0175	PF03683.8	gi|385803512|ref|YP_005839912.1|	-	5.1e-16	57.9	0.6	5.1e-16	57.9	0.4	1.5	2	0	0	2	2	2	1	Uncharacterised	protein	family	(UPF0175)
RHH_1	PF01402.16	gi|385803512|ref|YP_005839912.1|	-	0.00015	21.4	2.8	0.00038	20.2	0.7	2.5	3	1	1	4	4	4	1	Ribbon-helix-helix	protein,	copG	family
UPF0081	PF03652.10	gi|385803512|ref|YP_005839912.1|	-	0.086	12.9	0.1	0.12	12.4	0.1	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0081)
OrfB_Zn_ribbon	PF07282.6	gi|385803514|ref|YP_005839914.1|	-	0.67	9.6	2.7	0.26	10.9	0.2	1.6	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
TBPIP	PF07106.8	gi|385803515|ref|YP_005839915.1|	-	0.081	12.4	2.8	0.12	11.9	1.6	1.4	1	1	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
NYD-SP28	PF14772.1	gi|385803515|ref|YP_005839915.1|	-	0.12	12.4	3.4	0.31	11.1	2.0	1.8	1	1	1	2	2	2	0	Sperm	tail
DUF1843	PF08898.5	gi|385803515|ref|YP_005839915.1|	-	0.62	10.1	8.7	0.92	9.6	1.0	2.6	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF1843)
zf-ribbon_3	PF13248.1	gi|385803517|ref|YP_005839917.1|	-	0.022	13.9	1.1	0.68	9.2	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF2387	PF09526.5	gi|385803517|ref|YP_005839917.1|	-	0.082	12.8	2.5	0.17	11.8	0.1	2.2	2	1	0	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
Nudix_N_2	PF14803.1	gi|385803517|ref|YP_005839917.1|	-	0.53	10.0	3.8	0.44	10.2	0.3	2.3	3	0	0	3	3	3	0	Nudix	N-terminal
Mso1_Sec1_bdg	PF14475.1	gi|385803518|ref|YP_005839918.1|	-	0.064	12.6	0.1	0.12	11.8	0.1	1.5	1	0	0	1	1	1	0	Sec1-binding	region	of	Mso1
DrsE	PF02635.10	gi|385803520|ref|YP_005839920.1|	-	1.7e-06	28.0	0.0	2.2e-06	27.7	0.0	1.1	1	0	0	1	1	1	1	DsrE/DsrF-like	family
PAS_9	PF13426.1	gi|385803521|ref|YP_005839921.1|	-	7.3e-27	93.7	10.4	1.2e-08	35.2	0.0	5.5	5	0	0	5	5	5	4	PAS	domain
PAS_4	PF08448.5	gi|385803521|ref|YP_005839921.1|	-	8e-26	90.2	7.3	5.3e-12	45.7	0.1	4.7	4	0	0	4	4	4	3	PAS	fold
Response_reg	PF00072.19	gi|385803521|ref|YP_005839921.1|	-	3.4e-21	75.3	0.0	1.2e-20	73.6	0.0	2.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HATPase_c	PF02518.21	gi|385803521|ref|YP_005839921.1|	-	3.8e-20	71.6	0.4	1.1e-19	70.1	0.3	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.6	gi|385803521|ref|YP_005839921.1|	-	1.5e-18	66.7	12.7	2.5e-11	43.5	0.1	5.1	6	0	0	6	6	6	3	PAS	fold
HisKA	PF00512.20	gi|385803521|ref|YP_005839921.1|	-	3.9e-17	62.0	0.8	3.9e-17	62.0	0.6	4.0	4	0	0	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
PAS	PF00989.19	gi|385803521|ref|YP_005839921.1|	-	4e-11	42.7	12.3	6.4e-05	22.7	0.0	5.9	6	0	0	6	6	6	3	PAS	fold
PAS_8	PF13188.1	gi|385803521|ref|YP_005839921.1|	-	2.5e-08	33.4	0.0	9.1e-05	22.1	0.0	3.5	3	0	0	3	3	3	2	PAS	domain
HATPase_c_5	PF14501.1	gi|385803521|ref|YP_005839921.1|	-	2.2e-05	24.0	1.4	0.00017	21.2	0.0	2.9	3	0	0	3	3	3	1	GHKL	domain
HATPase_c_3	PF13589.1	gi|385803521|ref|YP_005839921.1|	-	0.0029	17.2	4.2	0.01	15.4	2.9	2.0	1	1	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Zn-ribbon_8	PF09723.5	gi|385803522|ref|YP_005839922.1|	-	0.00045	20.0	0.5	0.24	11.3	0.1	2.2	2	0	0	2	2	2	2	Zinc	ribbon	domain
DNA_ligase_ZBD	PF03119.11	gi|385803522|ref|YP_005839922.1|	-	0.0017	17.9	1.3	0.23	11.1	0.0	2.2	2	0	0	2	2	2	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zinc-ribbons_6	PF07191.7	gi|385803522|ref|YP_005839922.1|	-	0.0025	17.5	0.7	0.29	10.9	0.1	2.1	2	0	0	2	2	2	1	zinc-ribbons
UPF0547	PF10571.4	gi|385803522|ref|YP_005839922.1|	-	0.0027	17.3	1.1	0.66	9.7	0.1	2.2	2	0	0	2	2	2	2	Uncharacterised	protein	family	UPF0547
DZR	PF12773.2	gi|385803522|ref|YP_005839922.1|	-	0.0037	17.0	0.4	0.0062	16.3	0.3	1.4	1	1	0	1	1	1	1	Double	zinc	ribbon
zf-IS66	PF13005.2	gi|385803522|ref|YP_005839922.1|	-	0.0064	16.4	1.1	0.18	11.7	0.1	2.1	2	0	0	2	2	2	1	zinc-finger	binding	domain	of	transposase	IS66
zf-C2H2	PF00096.21	gi|385803522|ref|YP_005839922.1|	-	0.0077	16.5	1.7	0.53	10.7	0.0	2.2	2	0	0	2	2	2	1	Zinc	finger,	C2H2	type
CpXC	PF14353.1	gi|385803522|ref|YP_005839922.1|	-	0.0083	16.0	0.5	0.02	14.8	0.4	1.6	1	1	0	1	1	1	1	CpXC	protein
zf-LITAF-like	PF10601.4	gi|385803522|ref|YP_005839922.1|	-	0.015	15.1	0.1	0.47	10.3	0.0	2.1	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
zf-RING_3	PF14369.1	gi|385803522|ref|YP_005839922.1|	-	0.017	15.1	1.5	8.8	6.4	0.1	2.9	3	0	0	3	3	3	0	zinc-finger
zf-TFIIB	PF13453.1	gi|385803522|ref|YP_005839922.1|	-	0.02	14.0	1.1	1.1	8.4	0.1	2.1	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
zf-RING_4	PF14570.1	gi|385803522|ref|YP_005839922.1|	-	0.021	14.3	0.4	3.4	7.3	0.0	2.2	2	0	0	2	2	2	0	RING/Ubox	like	zinc-binding	domain
zf-C3HC4_3	PF13920.1	gi|385803522|ref|YP_005839922.1|	-	0.033	13.8	0.6	3	7.5	0.1	2.1	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-ribbon_3	PF13248.1	gi|385803522|ref|YP_005839922.1|	-	0.038	13.2	0.3	5.8	6.2	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF2256	PF10013.4	gi|385803522|ref|YP_005839922.1|	-	0.041	13.6	0.5	3.7	7.3	0.0	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2256)
TF_Zn_Ribbon	PF08271.7	gi|385803522|ref|YP_005839922.1|	-	0.075	12.3	1.4	2.2	7.6	0.1	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
Auto_anti-p27	PF06677.7	gi|385803522|ref|YP_005839922.1|	-	0.084	12.6	0.8	5.7	6.7	0.0	2.2	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
DUF329	PF03884.9	gi|385803522|ref|YP_005839922.1|	-	0.1	12.1	1.6	5.5	6.6	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF329)
Sgf11	PF08209.6	gi|385803522|ref|YP_005839922.1|	-	0.1	11.8	2.1	0.28	10.5	0.1	2.1	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
Mut7-C	PF01927.11	gi|385803522|ref|YP_005839922.1|	-	0.14	12.1	0.0	0.17	11.8	0.0	1.1	1	0	0	1	1	1	0	Mut7-C	RNAse	domain
DUF3039	PF11238.3	gi|385803522|ref|YP_005839922.1|	-	0.18	11.2	1.2	3.5	7.1	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3039)
zf-C4_Topoisom	PF01396.14	gi|385803522|ref|YP_005839922.1|	-	0.27	10.7	3.2	5.6	6.5	0.1	2.1	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-H2C2_2	PF13465.1	gi|385803522|ref|YP_005839922.1|	-	0.62	10.4	2.7	11	6.5	0.1	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
Opy2	PF09463.5	gi|385803522|ref|YP_005839922.1|	-	2.3	8.3	5.8	17	5.6	0.9	2.2	2	0	0	2	2	2	0	Opy2	protein
DUF217	PF02697.9	gi|385803524|ref|YP_005839924.1|	-	4.9e-05	23.4	0.5	6.1e-05	23.1	0.4	1.2	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1753
RHH_1	PF01402.16	gi|385803524|ref|YP_005839924.1|	-	0.0078	16.0	4.1	0.034	14.0	0.4	2.7	2	1	1	3	3	3	1	Ribbon-helix-helix	protein,	copG	family
PIN	PF01850.16	gi|385803525|ref|YP_005839925.1|	-	2.9e-12	46.9	0.1	3.5e-12	46.7	0.0	1.1	1	0	0	1	1	1	1	PIN	domain
PDDEXK_1	PF12705.2	gi|385803526|ref|YP_005839926.1|	-	3.9e-16	59.1	0.1	3.9e-16	59.1	0.1	2.1	2	1	0	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
Haemagg_act	PF05860.8	gi|385803526|ref|YP_005839926.1|	-	0.085	12.6	0.0	0.19	11.4	0.0	1.5	1	0	0	1	1	1	0	haemagglutination	activity	domain
UvrD-helicase	PF00580.16	gi|385803527|ref|YP_005839927.1|	-	1.9e-50	171.9	0.0	5.3e-50	170.4	0.0	1.8	2	1	0	2	2	2	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C	PF13361.1	gi|385803527|ref|YP_005839927.1|	-	5.3e-33	114.9	0.0	7.4e-17	61.8	0.0	2.3	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_19	PF13245.1	gi|385803527|ref|YP_005839927.1|	-	2e-13	49.8	0.0	1.2e-12	47.4	0.0	2.2	2	0	0	2	2	2	1	Part	of	AAA	domain
PDDEXK_1	PF12705.2	gi|385803527|ref|YP_005839927.1|	-	1.7e-08	34.1	0.6	1.2e-07	31.3	0.1	2.4	2	1	0	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
UvrD_C_2	PF13538.1	gi|385803527|ref|YP_005839927.1|	-	1.1e-07	31.9	0.4	0.011	15.8	0.1	3.2	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_30	PF13604.1	gi|385803527|ref|YP_005839927.1|	-	0.00021	20.9	0.0	0.00047	19.7	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_12	PF13087.1	gi|385803527|ref|YP_005839927.1|	-	0.0012	18.2	0.2	0.033	13.5	0.0	2.5	2	1	0	2	2	2	1	AAA	domain
AAA_11	PF13086.1	gi|385803527|ref|YP_005839927.1|	-	0.012	15.2	1.1	1.4	8.4	0.0	2.5	3	0	0	3	3	3	0	AAA	domain
DUF2800	PF10926.3	gi|385803527|ref|YP_005839927.1|	-	0.036	13.1	0.1	0.1	11.7	0.1	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2800)
Viral_helicase1	PF01443.13	gi|385803527|ref|YP_005839927.1|	-	0.042	13.3	1.8	22	4.4	0.1	3.7	4	0	0	4	4	4	0	Viral	(Superfamily	1)	RNA	helicase
Cas_Cas4	PF01930.12	gi|385803527|ref|YP_005839927.1|	-	0.07	13.0	0.1	0.19	11.6	0.1	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF83
Metallophos	PF00149.23	gi|385803528|ref|YP_005839928.1|	-	4.7e-09	35.9	0.1	8.4e-09	35.1	0.1	1.5	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.2	gi|385803528|ref|YP_005839928.1|	-	0.015	15.1	0.1	0.086	12.6	0.1	2.1	1	1	0	1	1	1	0	Calcineurin-like	phosphoesterase	superfamily	domain
Cas_TM1802	PF09484.5	gi|385803530|ref|YP_005839930.1|	-	1.3e-12	47.1	0.0	4.4e-12	45.3	0.0	1.7	1	1	0	1	1	1	1	CRISPR-associated	protein	TM1802	(cas_TM1802)
DUF1679	PF07914.6	gi|385803530|ref|YP_005839930.1|	-	0.0023	16.6	0.2	0.0039	15.8	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1679)
DUF694	PF05107.7	gi|385803531|ref|YP_005839931.1|	-	4.4e-58	196.6	0.0	5.1e-58	196.4	0.0	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF694)
Cas_Cas5d	PF09704.5	gi|385803532|ref|YP_005839932.1|	-	1.8e-09	37.5	0.1	2.3e-09	37.1	0.0	1.2	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_Cas5)
FAM91_N	PF14647.1	gi|385803532|ref|YP_005839932.1|	-	0.039	12.9	0.0	0.058	12.4	0.0	1.2	1	0	0	1	1	1	0	FAM91	N-terminus
DEAD	PF00270.24	gi|385803533|ref|YP_005839933.1|	-	4.5e-08	32.7	0.1	9.8e-08	31.6	0.0	1.6	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
HD	PF01966.17	gi|385803533|ref|YP_005839933.1|	-	0.0041	17.1	0.0	0.013	15.5	0.0	1.9	1	0	0	1	1	1	1	HD	domain
ResIII	PF04851.10	gi|385803533|ref|YP_005839933.1|	-	0.074	12.8	0.0	0.17	11.6	0.0	1.6	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
Cas_Cas4	PF01930.12	gi|385803534|ref|YP_005839934.1|	-	1.4e-45	155.1	0.0	1.6e-45	154.9	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.2	gi|385803534|ref|YP_005839934.1|	-	2.5e-05	23.8	0.1	2.6e-05	23.7	0.0	1.2	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
Cas_Cas1	PF01867.11	gi|385803535|ref|YP_005839935.1|	-	1.9e-80	269.9	0.0	2.3e-80	269.7	0.0	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
CRISPR_Cas2	PF09827.4	gi|385803536|ref|YP_005839936.1|	-	2.8e-14	52.9	0.0	3.2e-14	52.8	0.0	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas2
RHH_1	PF01402.16	gi|385803537|ref|YP_005839937.1|	-	0.0021	17.8	4.5	0.0036	17.1	0.8	2.5	2	1	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.2	gi|385803537|ref|YP_005839937.1|	-	0.0092	15.6	0.0	0.014	15.0	0.0	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	domain
Antitoxin-MazE	PF04014.13	gi|385803539|ref|YP_005839939.1|	-	2.8e-10	39.6	0.2	3.5e-10	39.3	0.1	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
DUF262	PF03235.9	gi|385803540|ref|YP_005839940.1|	-	4.1e-29	102.1	1.1	4.1e-29	102.1	0.8	2.9	3	1	0	3	3	3	1	Protein	of	unknown	function	DUF262
DUF1524	PF07510.6	gi|385803540|ref|YP_005839940.1|	-	1e-15	57.8	0.4	2.2e-15	56.7	0.3	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1524)
RVT_3	PF13456.1	gi|385803541|ref|YP_005839941.1|	-	0.13	12.0	0.0	0.14	11.9	0.0	1.1	1	0	0	1	1	1	0	Reverse	transcriptase-like
TrmB	PF01978.14	gi|385803543|ref|YP_005839943.1|	-	0.00056	19.5	0.0	0.0016	18.1	0.0	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
FaeA	PF04703.7	gi|385803543|ref|YP_005839943.1|	-	0.038	14.1	0.0	0.066	13.3	0.0	1.4	1	0	0	1	1	1	0	FaeA-like	protein
Rrf2	PF02082.15	gi|385803543|ref|YP_005839943.1|	-	0.11	12.6	0.0	0.21	11.7	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_24	PF13412.1	gi|385803543|ref|YP_005839943.1|	-	0.12	11.7	0.3	0.35	10.2	0.0	1.9	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.1	gi|385803543|ref|YP_005839943.1|	-	0.67	10.3	2.8	1	9.7	0.1	2.5	3	0	0	3	3	3	0	Winged	helix	DNA-binding	domain
TSC22	PF01166.13	gi|385803546|ref|YP_005839946.1|	-	0.13	12.1	0.0	0.23	11.4	0.0	1.3	1	0	0	1	1	1	0	TSC-22/dip/bun	family
HTH_20	PF12840.2	gi|385803547|ref|YP_005839947.1|	-	0.0053	16.5	0.1	0.0077	16.0	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF2250	PF10007.4	gi|385803547|ref|YP_005839947.1|	-	0.11	12.4	0.0	0.18	11.7	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
DUF262	PF03235.9	gi|385803550|ref|YP_005839950.1|	-	1.2e-37	129.9	3.5	1.2e-37	129.9	2.4	2.3	2	1	0	2	2	2	1	Protein	of	unknown	function	DUF262
DUF1524	PF07510.6	gi|385803550|ref|YP_005839950.1|	-	7.9e-28	97.0	4.9	7.9e-28	97.0	3.4	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1524)
DUF790	PF05626.6	gi|385803552|ref|YP_005839952.1|	-	1.2e-135	451.9	0.0	1.3e-135	451.7	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF790)
ResIII	PF04851.10	gi|385803553|ref|YP_005839953.1|	-	3.2e-24	85.7	0.0	1.7e-23	83.3	0.0	2.2	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.26	gi|385803553|ref|YP_005839953.1|	-	8.7e-20	70.3	0.1	1.9e-19	69.2	0.0	1.6	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.24	gi|385803553|ref|YP_005839953.1|	-	3.1e-12	46.3	0.0	8.1e-12	44.9	0.0	1.7	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
AAA_22	PF13401.1	gi|385803553|ref|YP_005839953.1|	-	0.00019	21.5	0.0	0.00087	19.4	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
IstB_IS21	PF01695.12	gi|385803553|ref|YP_005839953.1|	-	0.0026	17.2	0.1	0.059	12.7	0.0	2.7	3	0	0	3	3	3	1	IstB-like	ATP	binding	protein
PhoH	PF02562.11	gi|385803553|ref|YP_005839953.1|	-	0.012	14.8	0.0	0.022	14.0	0.0	1.4	1	0	0	1	1	1	0	PhoH-like	protein
Zot	PF05707.7	gi|385803553|ref|YP_005839953.1|	-	0.012	15.0	0.0	0.025	14.0	0.0	1.6	1	0	0	1	1	1	0	Zonular	occludens	toxin	(Zot)
Helicase_C_2	PF13307.1	gi|385803553|ref|YP_005839953.1|	-	0.076	12.9	0.2	2	8.3	0.0	3.0	3	0	0	3	3	3	0	Helicase	C-terminal	domain
DUF2800	PF10926.3	gi|385803555|ref|YP_005839955.1|	-	0.00032	19.9	0.1	0.00063	18.9	0.0	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2800)
Med9	PF07544.8	gi|385803555|ref|YP_005839955.1|	-	0.011	15.4	0.7	0.044	13.5	0.5	2.0	1	0	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
DivIC	PF04977.10	gi|385803555|ref|YP_005839955.1|	-	0.029	13.8	1.3	0.056	12.9	0.2	2.0	2	0	0	2	2	2	0	Septum	formation	initiator
DUF972	PF06156.8	gi|385803555|ref|YP_005839955.1|	-	0.16	12.3	0.5	0.44	10.9	0.2	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF972)
DUF4140	PF13600.1	gi|385803555|ref|YP_005839955.1|	-	1.3	9.5	6.1	0.72	10.3	2.3	2.0	2	1	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
IncA	PF04156.9	gi|385803555|ref|YP_005839955.1|	-	1.3	8.5	5.9	0.24	10.9	1.4	1.7	2	0	0	2	2	2	0	IncA	protein
ADIP	PF11559.3	gi|385803555|ref|YP_005839955.1|	-	2.8	7.8	6.0	0.47	10.3	0.9	2.0	2	1	0	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
NikR_C	PF08753.6	gi|385803556|ref|YP_005839956.1|	-	5.1e-07	29.4	0.0	7.1e-07	29.0	0.0	1.3	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
CbiM	PF01891.11	gi|385803557|ref|YP_005839957.1|	-	2.8e-31	108.7	24.6	3.2e-31	108.5	17.1	1.0	1	0	0	1	1	1	1	Cobalt	uptake	substrate-specific	transmembrane	region
DUF3816	PF12822.2	gi|385803557|ref|YP_005839957.1|	-	0.048	13.5	28.2	0.023	14.6	15.3	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3816)
DUF1370	PF07114.6	gi|385803557|ref|YP_005839957.1|	-	3.3	6.9	6.7	1.8	7.7	0.3	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1370)
CD20	PF04103.10	gi|385803557|ref|YP_005839957.1|	-	6	6.7	19.0	1.2	9.0	4.8	2.4	1	1	1	2	2	2	0	CD20-like	family
CbiQ	PF02361.11	gi|385803559|ref|YP_005839959.1|	-	1.6e-25	89.9	3.8	2.1e-25	89.6	2.6	1.1	1	0	0	1	1	1	1	Cobalt	transport	protein
ABC_tran	PF00005.22	gi|385803560|ref|YP_005839960.1|	-	6.2e-28	97.8	0.0	8.6e-28	97.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385803560|ref|YP_005839960.1|	-	4e-14	53.2	0.0	1.7e-09	38.1	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|385803560|ref|YP_005839960.1|	-	2.1e-08	33.7	0.0	1.1e-07	31.2	0.0	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|385803560|ref|YP_005839960.1|	-	4.9e-06	25.9	0.0	9.4e-06	25.0	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.1	gi|385803560|ref|YP_005839960.1|	-	1.6e-05	24.1	0.0	0.11	11.4	0.0	2.0	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_13	PF13166.1	gi|385803560|ref|YP_005839960.1|	-	0.00033	19.2	0.0	0.017	13.6	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_23	PF13476.1	gi|385803560|ref|YP_005839960.1|	-	0.0018	18.6	0.0	0.0025	18.1	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_28	PF13521.1	gi|385803560|ref|YP_005839960.1|	-	0.002	18.1	0.1	0.0051	16.7	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
ABC_ATPase	PF09818.4	gi|385803560|ref|YP_005839960.1|	-	0.0042	15.7	0.9	0.013	14.1	0.1	1.8	2	0	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
MukB	PF04310.7	gi|385803560|ref|YP_005839960.1|	-	0.0053	16.1	0.0	0.0084	15.4	0.0	1.3	1	0	0	1	1	1	1	MukB	N-terminal
DUF258	PF03193.11	gi|385803560|ref|YP_005839960.1|	-	0.0064	15.6	0.0	0.01	15.0	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_16	PF13191.1	gi|385803560|ref|YP_005839960.1|	-	0.0098	15.8	0.3	0.025	14.5	0.2	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_17	PF13207.1	gi|385803560|ref|YP_005839960.1|	-	0.024	15.4	0.1	0.055	14.2	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.7	gi|385803560|ref|YP_005839960.1|	-	0.03	13.4	0.0	0.29	10.2	0.0	2.3	3	0	0	3	3	3	0	Zeta	toxin
AAA_19	PF13245.1	gi|385803560|ref|YP_005839960.1|	-	0.046	13.4	1.1	1.1	9.0	0.0	2.8	4	0	0	4	4	2	0	Part	of	AAA	domain
AAA_30	PF13604.1	gi|385803560|ref|YP_005839960.1|	-	0.046	13.2	0.0	0.088	12.3	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|385803560|ref|YP_005839960.1|	-	0.052	13.4	0.0	0.093	12.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
MobB	PF03205.9	gi|385803560|ref|YP_005839960.1|	-	0.064	12.9	0.0	0.2	11.3	0.0	1.8	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NACHT	PF05729.7	gi|385803560|ref|YP_005839960.1|	-	0.072	12.7	0.0	0.12	12.0	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
AAA_25	PF13481.1	gi|385803560|ref|YP_005839960.1|	-	0.075	12.4	0.1	0.14	11.5	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
HAD	PF12710.2	gi|385803560|ref|YP_005839960.1|	-	0.087	12.9	0.0	0.13	12.4	0.0	1.3	1	0	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
Miro	PF08477.8	gi|385803560|ref|YP_005839960.1|	-	0.14	12.7	0.0	0.26	11.8	0.0	1.5	1	0	0	1	1	1	0	Miro-like	protein
SbcCD_C	PF13558.1	gi|385803560|ref|YP_005839960.1|	-	0.15	11.9	0.0	0.89	9.5	0.0	2.1	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
NikR_C	PF08753.6	gi|385803561|ref|YP_005839961.1|	-	4.5e-11	42.4	0.1	8.2e-11	41.6	0.1	1.4	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
Kinesin-related	PF06548.6	gi|385803561|ref|YP_005839961.1|	-	0.03	12.8	0.1	0.034	12.7	0.1	1.1	1	0	0	1	1	1	0	Kinesin-related
DUF3788	PF12663.2	gi|385803561|ref|YP_005839961.1|	-	0.056	13.1	0.1	0.17	11.5	0.0	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3788)
YojJ	PF10372.4	gi|385803561|ref|YP_005839961.1|	-	0.074	12.9	0.1	0.14	12.0	0.1	1.6	1	0	0	1	1	1	0	Bacterial	membrane-spanning	protein	N-terminus
UPF0061	PF02696.9	gi|385803562|ref|YP_005839962.1|	-	9.8e-91	304.4	1.1	2.4e-88	296.5	0.8	2.0	1	1	0	1	1	1	1	Uncharacterized	ACR,	YdiU/UPF0061	family
Phenyl_P_gamma	PF09662.5	gi|385803562|ref|YP_005839962.1|	-	0.11	12.2	0.0	0.38	10.4	0.0	2.0	2	0	0	2	2	2	0	Phenylphosphate	carboxylase	gamma	subunit	(Phenyl_P_gamma)
PemK	PF02452.12	gi|385803563|ref|YP_005839963.1|	-	1e-22	80.4	0.1	1.1e-22	80.2	0.0	1.0	1	0	0	1	1	1	1	PemK-like	protein
MarR_2	PF12802.2	gi|385803565|ref|YP_005839965.1|	-	2e-05	24.1	0.0	3.2e-05	23.5	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HrcA_DNA-bdg	PF03444.10	gi|385803565|ref|YP_005839965.1|	-	0.00014	21.2	0.0	0.00022	20.5	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
HTH_Crp_2	PF13545.1	gi|385803565|ref|YP_005839965.1|	-	0.00034	20.3	0.0	0.00054	19.6	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.1	gi|385803565|ref|YP_005839965.1|	-	0.00048	19.4	0.0	0.00069	18.9	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.15	gi|385803565|ref|YP_005839965.1|	-	0.00059	19.9	0.0	0.00082	19.4	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator
DUF4423	PF14394.1	gi|385803565|ref|YP_005839965.1|	-	0.00083	18.9	0.1	0.0045	16.5	0.0	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4423)
Sigma70_r4_2	PF08281.7	gi|385803565|ref|YP_005839965.1|	-	0.0015	17.9	0.0	0.0026	17.1	0.0	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_27	PF13463.1	gi|385803565|ref|YP_005839965.1|	-	0.0018	18.5	0.0	0.0037	17.5	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|385803565|ref|YP_005839965.1|	-	0.0023	17.5	0.0	0.0038	16.9	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|385803565|ref|YP_005839965.1|	-	0.0046	16.5	0.0	0.0091	15.5	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
PaaX	PF07848.7	gi|385803565|ref|YP_005839965.1|	-	0.0048	16.8	0.0	0.0083	16.1	0.0	1.4	1	0	0	1	1	1	1	PaaX-like	protein
GntR	PF00392.16	gi|385803565|ref|YP_005839965.1|	-	0.0063	15.9	0.0	0.012	15.0	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
Fe_dep_repress	PF01325.14	gi|385803565|ref|YP_005839965.1|	-	0.0065	16.3	0.0	0.011	15.6	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_5	PF01022.15	gi|385803565|ref|YP_005839965.1|	-	0.0067	16.0	0.0	0.0099	15.5	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.17	gi|385803565|ref|YP_005839965.1|	-	0.038	13.6	0.0	0.067	12.9	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HTH_34	PF13601.1	gi|385803565|ref|YP_005839965.1|	-	0.055	13.5	0.1	0.12	12.4	0.0	1.6	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_10	PF04967.7	gi|385803565|ref|YP_005839965.1|	-	0.12	12.0	0.0	0.21	11.2	0.0	1.3	1	0	0	1	1	1	0	HTH	DNA	binding	domain
NikR_C	PF08753.6	gi|385803567|ref|YP_005839967.1|	-	1.4e-16	60.1	0.1	2e-16	59.6	0.0	1.3	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.16	gi|385803567|ref|YP_005839967.1|	-	8.9e-05	22.2	0.1	0.00014	21.5	0.0	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
Arc	PF03869.9	gi|385803567|ref|YP_005839967.1|	-	0.044	13.4	0.1	0.07	12.7	0.0	1.3	1	0	0	1	1	1	0	Arc-like	DNA	binding	domain
cobW	PF02492.14	gi|385803568|ref|YP_005839968.1|	-	1.3e-48	164.7	0.0	1.7e-48	164.4	0.0	1.1	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
CobW_C	PF07683.9	gi|385803568|ref|YP_005839968.1|	-	2.1e-25	88.2	0.1	4.6e-25	87.1	0.1	1.6	1	0	0	1	1	1	1	Cobalamin	synthesis	protein	cobW	C-terminal	domain
GTP_EFTU	PF00009.22	gi|385803568|ref|YP_005839968.1|	-	3e-05	23.5	0.0	0.18	11.2	0.0	2.1	2	0	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
AAA_10	PF12846.2	gi|385803568|ref|YP_005839968.1|	-	0.0085	15.5	0.1	0.048	13.1	0.1	2.0	1	1	1	2	2	2	1	AAA-like	domain
T2SE	PF00437.15	gi|385803568|ref|YP_005839968.1|	-	0.009	14.9	0.1	0.014	14.3	0.1	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
Zeta_toxin	PF06414.7	gi|385803568|ref|YP_005839968.1|	-	0.042	12.9	0.0	0.083	11.9	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
TrwB_AAD_bind	PF10412.4	gi|385803568|ref|YP_005839968.1|	-	0.069	11.7	0.0	0.12	10.9	0.0	1.3	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_19	PF13245.1	gi|385803568|ref|YP_005839968.1|	-	0.075	12.7	0.1	0.15	11.8	0.0	1.5	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_14	PF13173.1	gi|385803568|ref|YP_005839968.1|	-	0.077	12.8	0.0	0.15	11.9	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.22	gi|385803568|ref|YP_005839968.1|	-	0.082	13.2	0.0	0.16	12.2	0.0	1.4	1	0	0	1	1	1	0	ABC	transporter
AAA_22	PF13401.1	gi|385803568|ref|YP_005839968.1|	-	0.087	12.9	0.0	0.35	11.0	0.0	2.0	3	0	0	3	3	2	0	AAA	domain
AAA_17	PF13207.1	gi|385803568|ref|YP_005839968.1|	-	0.24	12.2	1.0	2.3	9.0	0.7	2.6	1	1	0	1	1	1	0	AAA	domain
cobW	PF02492.14	gi|385803569|ref|YP_005839969.1|	-	9.3e-47	158.7	0.1	1.2e-46	158.3	0.0	1.1	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
CobW_C	PF07683.9	gi|385803569|ref|YP_005839969.1|	-	2e-26	91.5	0.1	4.7e-26	90.3	0.1	1.7	1	0	0	1	1	1	1	Cobalamin	synthesis	protein	cobW	C-terminal	domain
GTP_EFTU	PF00009.22	gi|385803569|ref|YP_005839969.1|	-	0.00081	18.8	0.0	0.46	9.8	0.0	2.4	2	0	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
T2SE	PF00437.15	gi|385803569|ref|YP_005839969.1|	-	0.0063	15.4	0.1	0.011	14.6	0.1	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_19	PF13245.1	gi|385803569|ref|YP_005839969.1|	-	0.0085	15.8	0.9	0.041	13.6	0.2	2.3	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_29	PF13555.1	gi|385803569|ref|YP_005839969.1|	-	0.016	14.6	0.1	0.044	13.3	0.1	1.7	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Zeta_toxin	PF06414.7	gi|385803569|ref|YP_005839969.1|	-	0.025	13.6	0.0	0.054	12.5	0.0	1.6	1	0	0	1	1	1	0	Zeta	toxin
UPF0079	PF02367.12	gi|385803569|ref|YP_005839969.1|	-	0.035	13.7	0.1	0.078	12.6	0.0	1.5	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_28	PF13521.1	gi|385803569|ref|YP_005839969.1|	-	0.04	13.8	0.1	0.12	12.3	0.0	1.9	1	0	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|385803569|ref|YP_005839969.1|	-	0.073	12.5	0.0	0.12	11.8	0.0	1.4	1	0	0	1	1	1	0	AAA-like	domain
AAA_23	PF13476.1	gi|385803569|ref|YP_005839969.1|	-	0.11	12.8	0.1	0.17	12.2	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
MoCF_biosynth	PF00994.19	gi|385803570|ref|YP_005839970.1|	-	2.3e-28	98.4	0.3	2.9e-28	98.0	0.2	1.1	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
NifU_N	PF01592.11	gi|385803571|ref|YP_005839971.1|	-	1.5e-26	92.8	0.0	1.8e-26	92.5	0.0	1.0	1	0	0	1	1	1	1	NifU-like	N	terminal	domain
Mac	PF12464.3	gi|385803573|ref|YP_005839973.1|	-	0.049	13.6	0.2	0.081	12.9	0.0	1.4	2	0	0	2	2	2	0	Maltose	acetyltransferase
TroA	PF01297.12	gi|385803574|ref|YP_005839974.1|	-	1.3e-56	191.7	0.0	1.7e-56	191.3	0.0	1.1	1	0	0	1	1	1	1	Periplasmic	solute	binding	protein	family
TAT_signal	PF10518.4	gi|385803574|ref|YP_005839974.1|	-	0.076	13.0	0.6	0.14	12.2	0.4	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ABC_tran	PF00005.22	gi|385803575|ref|YP_005839975.1|	-	3.8e-31	108.1	0.0	5.1e-31	107.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385803575|ref|YP_005839975.1|	-	8.2e-12	45.6	0.0	5.8e-06	26.4	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|385803575|ref|YP_005839975.1|	-	8.4e-06	25.1	0.1	7.8e-05	21.9	0.0	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|385803575|ref|YP_005839975.1|	-	4.4e-05	22.9	0.1	7.8e-05	22.1	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SbcCD_C	PF13558.1	gi|385803575|ref|YP_005839975.1|	-	0.00039	20.2	0.5	0.0079	16.0	0.3	2.4	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_25	PF13481.1	gi|385803575|ref|YP_005839975.1|	-	0.00095	18.6	0.2	0.0087	15.4	0.1	2.2	2	1	0	2	2	2	1	AAA	domain
AAA_23	PF13476.1	gi|385803575|ref|YP_005839975.1|	-	0.0019	18.5	0.0	0.0034	17.7	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
YbjN	PF10722.4	gi|385803575|ref|YP_005839975.1|	-	0.0097	15.9	0.1	0.015	15.3	0.0	1.3	1	0	0	1	1	1	1	Putative	bacterial	sensory	transduction	regulator
ArgK	PF03308.11	gi|385803575|ref|YP_005839975.1|	-	0.034	12.9	0.6	0.15	10.7	0.1	2.0	2	0	0	2	2	2	0	ArgK	protein
AAA_33	PF13671.1	gi|385803575|ref|YP_005839975.1|	-	0.04	13.7	0.2	0.13	12.1	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|385803575|ref|YP_005839975.1|	-	0.047	13.6	1.4	0.25	11.3	1.0	2.0	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_10	PF12846.2	gi|385803575|ref|YP_005839975.1|	-	0.058	12.8	0.0	0.099	12.0	0.0	1.3	1	0	0	1	1	1	0	AAA-like	domain
MobB	PF03205.9	gi|385803575|ref|YP_005839975.1|	-	0.069	12.8	0.0	0.53	9.9	0.0	2.2	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Peripla_BP_4	PF13407.1	gi|385803575|ref|YP_005839975.1|	-	0.12	11.7	0.0	0.46	9.8	0.0	1.8	2	0	0	2	2	2	0	Periplasmic	binding	protein	domain
AAA_17	PF13207.1	gi|385803575|ref|YP_005839975.1|	-	0.16	12.7	0.4	1.2	9.9	0.1	2.2	2	1	0	2	2	2	0	AAA	domain
ABC-3	PF00950.12	gi|385803576|ref|YP_005839976.1|	-	4e-57	193.4	42.5	4.8e-57	193.1	29.5	1.1	1	0	0	1	1	1	1	ABC	3	transport	family
FecCD	PF01032.13	gi|385803576|ref|YP_005839976.1|	-	7.1e-05	21.7	40.7	7.1e-05	21.7	28.2	2.0	1	1	1	2	2	2	2	FecCD	transport	family
MarR_2	PF12802.2	gi|385803577|ref|YP_005839977.1|	-	0.0012	18.4	0.1	0.0018	17.9	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_13	PF11972.3	gi|385803577|ref|YP_005839977.1|	-	0.0014	18.3	0.0	0.0026	17.5	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
FaeA	PF04703.7	gi|385803577|ref|YP_005839977.1|	-	0.0069	16.5	0.0	0.0098	16.0	0.0	1.2	1	0	0	1	1	1	1	FaeA-like	protein
HTH_Crp_2	PF13545.1	gi|385803577|ref|YP_005839977.1|	-	0.0076	16.0	0.0	0.0096	15.6	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Sigma70_r4	PF04545.11	gi|385803577|ref|YP_005839977.1|	-	0.095	12.0	0.0	0.17	11.2	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
TrmB	PF01978.14	gi|385803577|ref|YP_005839977.1|	-	0.1	12.2	0.0	0.16	11.7	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.14	gi|385803577|ref|YP_005839977.1|	-	0.13	12.2	0.0	0.2	11.6	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_11	PF08279.7	gi|385803577|ref|YP_005839977.1|	-	0.14	11.8	0.0	0.23	11.1	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
HTH_DeoR	PF08220.7	gi|385803577|ref|YP_005839977.1|	-	0.16	11.5	0.2	0.3	10.6	0.0	1.5	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
PIN	PF01850.16	gi|385803578|ref|YP_005839978.1|	-	1.4e-06	28.6	0.2	1.7e-06	28.3	0.2	1.0	1	0	0	1	1	1	1	PIN	domain
zf-C2H2_6	PF13912.1	gi|385803579|ref|YP_005839979.1|	-	1.9e-07	30.7	4.2	0.0021	17.9	0.2	2.2	2	0	0	2	2	2	2	C2H2-type	zinc	finger
zf-C2H2	PF00096.21	gi|385803579|ref|YP_005839979.1|	-	1.3e-06	28.4	3.4	0.0088	16.3	0.3	2.1	2	0	0	2	2	2	2	Zinc	finger,	C2H2	type
zf-C2H2_jaz	PF12171.3	gi|385803579|ref|YP_005839979.1|	-	5.9e-05	23.0	4.5	0.035	14.2	0.1	2.2	2	0	0	2	2	2	2	Zinc-finger	double-stranded	RNA-binding
zf-C2H2_4	PF13894.1	gi|385803579|ref|YP_005839979.1|	-	6.5e-05	22.9	5.0	0.011	15.9	0.3	2.1	2	0	0	2	2	2	2	C2H2-type	zinc	finger
zf-C2H2_2	PF12756.2	gi|385803579|ref|YP_005839979.1|	-	0.0011	19.0	4.3	0.16	12.0	0.6	2.0	1	1	1	2	2	2	2	C2H2	type	zinc-finger	(2	copies)
zf-H2C2_5	PF13909.1	gi|385803579|ref|YP_005839979.1|	-	0.0015	18.6	6.9	0.0046	17.1	0.4	2.4	2	1	0	2	2	2	1	C2H2-type	zinc-finger	domain
zf-LYAR	PF08790.6	gi|385803579|ref|YP_005839979.1|	-	0.0085	15.7	4.4	0.89	9.3	0.1	2.2	2	0	0	2	2	2	2	LYAR-type	C2HC	zinc	finger
zinc_ribbon_4	PF13717.1	gi|385803579|ref|YP_005839979.1|	-	0.029	14.0	1.3	0.55	9.9	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-DNL	PF05180.7	gi|385803579|ref|YP_005839979.1|	-	0.052	13.2	1.7	5.5	6.7	0.1	2.1	2	0	0	2	2	2	0	DNL	zinc	finger
zf-ribbon_3	PF13248.1	gi|385803579|ref|YP_005839979.1|	-	0.056	12.6	0.7	1.5	8.1	0.1	2.0	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|385803579|ref|YP_005839979.1|	-	0.075	12.6	2.9	0.68	9.5	0.2	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|385803579|ref|YP_005839979.1|	-	0.086	12.8	3.9	2.8	7.9	2.9	2.1	1	1	1	2	2	2	0	Zinc	ribbon	domain
Prok-RING_1	PF14446.1	gi|385803579|ref|YP_005839979.1|	-	0.097	12.4	4.1	0.93	9.2	0.7	2.1	1	1	1	2	2	2	0	Prokaryotic	RING	finger	family	1
zf-HIT	PF04438.11	gi|385803579|ref|YP_005839979.1|	-	0.098	12.3	1.4	0.64	9.7	0.1	2.0	2	0	0	2	2	2	0	HIT	zinc	finger
TFIIS_C	PF01096.13	gi|385803579|ref|YP_005839979.1|	-	0.099	12.2	2.9	1.8	8.2	0.1	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-Di19	PF05605.7	gi|385803579|ref|YP_005839979.1|	-	0.12	12.5	7.5	4.1	7.6	0.7	2.1	1	1	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
RRN7	PF11781.3	gi|385803579|ref|YP_005839979.1|	-	0.13	11.7	2.1	1.1	8.7	0.1	2.1	2	0	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
zf-RING_3	PF14369.1	gi|385803579|ref|YP_005839979.1|	-	0.15	12.1	1.3	7.2	6.7	0.0	2.2	2	0	0	2	2	2	0	zinc-finger
DNA_RNApol_7kD	PF03604.8	gi|385803579|ref|YP_005839979.1|	-	0.15	11.5	1.9	5.9	6.4	0.1	2.2	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
LIM	PF00412.17	gi|385803579|ref|YP_005839979.1|	-	0.2	11.7	3.6	1.1	9.4	2.5	1.9	1	1	0	1	1	1	0	LIM	domain
DUF629	PF04780.7	gi|385803579|ref|YP_005839979.1|	-	0.23	9.9	5.6	1.2	7.5	1.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF629)
DZR	PF12773.2	gi|385803579|ref|YP_005839979.1|	-	0.27	11.0	3.1	0.6	9.9	2.2	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
zinc-ribbons_6	PF07191.7	gi|385803579|ref|YP_005839979.1|	-	0.28	11.0	4.3	10	6.0	3.0	2.0	1	1	0	1	1	1	0	zinc-ribbons
zf-C3HC4_3	PF13920.1	gi|385803579|ref|YP_005839979.1|	-	0.38	10.4	2.8	0.72	9.5	1.9	1.5	1	1	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
C1_4	PF07975.7	gi|385803579|ref|YP_005839979.1|	-	0.69	9.9	5.0	1.3	9.1	3.4	1.6	1	1	0	1	1	1	0	TFIIH	C1-like	domain
HNH	PF01844.18	gi|385803579|ref|YP_005839979.1|	-	0.75	9.7	6.3	1.7	8.5	1.0	2.1	2	0	0	2	2	2	0	HNH	endonuclease
zf-DBF	PF07535.7	gi|385803579|ref|YP_005839979.1|	-	1.2	8.8	6.5	1.4	8.6	3.9	1.6	1	1	0	1	1	1	0	DBF	zinc	finger
FYVE	PF01363.16	gi|385803579|ref|YP_005839979.1|	-	1.3	8.9	4.7	11	6.0	0.4	2.0	1	1	1	2	2	2	0	FYVE	zinc	finger
zf-H2C2_2	PF13465.1	gi|385803579|ref|YP_005839979.1|	-	8.5	6.8	12.8	3.6	8.0	0.1	3.0	3	1	0	3	3	3	0	Zinc-finger	double	domain
HTH_Crp_2	PF13545.1	gi|385803580|ref|YP_005839980.1|	-	0.014	15.1	0.0	0.019	14.7	0.0	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Phage_CI_repr	PF07022.8	gi|385803580|ref|YP_005839980.1|	-	0.056	13.5	0.0	0.067	13.2	0.0	1.3	1	0	0	1	1	1	0	Bacteriophage	CI	repressor	helix-turn-helix	domain
HTH_11	PF08279.7	gi|385803580|ref|YP_005839980.1|	-	0.057	13.0	0.0	0.082	12.5	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
TrmB	PF01978.14	gi|385803580|ref|YP_005839980.1|	-	0.082	12.6	0.0	0.11	12.2	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|385803580|ref|YP_005839980.1|	-	0.12	12.0	0.0	0.16	11.6	0.0	1.2	1	0	0	1	1	1	0	MarR	family
LacI	PF00356.16	gi|385803580|ref|YP_005839980.1|	-	0.14	11.8	0.0	0.26	10.9	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	lacI	family
MarR	PF01047.17	gi|385803580|ref|YP_005839980.1|	-	0.14	11.8	0.0	0.21	11.3	0.0	1.2	1	0	0	1	1	1	0	MarR	family
FAD_binding_3	PF01494.14	gi|385803581|ref|YP_005839981.1|	-	2.4e-09	36.7	0.6	3.6e-08	32.8	0.4	2.0	1	1	0	1	1	1	1	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|385803581|ref|YP_005839981.1|	-	0.00034	19.8	3.3	0.0029	16.7	2.3	2.0	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Trp_halogenase	PF04820.9	gi|385803581|ref|YP_005839981.1|	-	0.0062	15.2	0.0	0.6	8.6	0.0	2.2	2	0	0	2	2	2	2	Tryptophan	halogenase
Pyr_redox_2	PF07992.9	gi|385803581|ref|YP_005839981.1|	-	0.012	15.5	0.0	0.17	11.7	0.0	2.5	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|385803581|ref|YP_005839981.1|	-	0.049	12.5	0.2	0.096	11.5	0.1	1.5	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.22	gi|385803581|ref|YP_005839981.1|	-	0.15	12.4	0.5	1	9.8	0.3	2.1	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|385803581|ref|YP_005839981.1|	-	0.17	10.6	2.3	4.7	5.9	1.0	2.3	1	1	1	2	2	2	0	FAD	binding	domain
DUF4010	PF13194.1	gi|385803582|ref|YP_005839982.1|	-	3.3e-65	219.3	20.2	3.3e-65	219.3	14.0	2.4	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4010)
CytB6-F_Fe-S	PF08802.5	gi|385803583|ref|YP_005839983.1|	-	0.52	10.3	2.1	1.3	9.0	0.1	2.3	2	0	0	2	2	2	0	Cytochrome	B6-F	complex	Fe-S	subunit
MFS_1	PF07690.11	gi|385803584|ref|YP_005839984.1|	-	9.7e-30	103.4	48.7	9.7e-30	103.4	33.8	1.5	2	0	0	2	2	2	1	Major	Facilitator	Superfamily
MFS_1_like	PF12832.2	gi|385803584|ref|YP_005839984.1|	-	2.8e-05	23.8	3.5	0.00038	20.2	0.5	2.8	2	0	0	2	2	2	1	MFS_1	like	family
ESSS	PF10183.4	gi|385803584|ref|YP_005839984.1|	-	4.9	7.5	6.2	0.67	10.3	0.7	2.4	2	1	0	2	2	2	0	ESSS	subunit	of	NADH:ubiquinone	oxidoreductase	(complex	I)
DUF4538	PF15061.1	gi|385803584|ref|YP_005839984.1|	-	9.7	5.5	8.1	12	5.2	0.3	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4538)
Molybdopterin	PF00384.17	gi|385803585|ref|YP_005839985.1|	-	4.4e-63	213.5	0.0	5.5e-63	213.2	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.16	gi|385803585|ref|YP_005839985.1|	-	5.4e-16	58.3	0.1	1.3e-15	57.1	0.0	1.7	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.11	gi|385803585|ref|YP_005839985.1|	-	2.3e-08	33.6	2.2	5.7e-08	32.4	1.5	1.6	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
NIR_SIR	PF01077.17	gi|385803586|ref|YP_005839986.1|	-	7.8e-45	152.0	0.1	1.3e-29	102.6	0.0	2.4	3	0	0	3	3	3	2	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.12	gi|385803586|ref|YP_005839986.1|	-	3.4e-32	109.8	0.1	4.2e-15	55.1	0.0	3.1	2	1	0	2	2	2	2	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
Molybdopterin	PF00384.17	gi|385803587|ref|YP_005839987.1|	-	1.4e-58	198.6	0.0	1.7e-58	198.4	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.16	gi|385803587|ref|YP_005839987.1|	-	2.1e-11	43.5	0.4	1.1e-10	41.2	0.2	2.2	1	1	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.11	gi|385803587|ref|YP_005839987.1|	-	1.2e-07	31.3	0.7	3.1e-07	30.0	0.5	1.7	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
DUF2993	PF11209.3	gi|385803588|ref|YP_005839988.1|	-	0.06	13.2	0.8	0.076	12.9	0.5	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2993)
Acetyltransf_10	PF13673.1	gi|385803590|ref|YP_005839990.1|	-	0.00025	21.1	0.0	0.0005	20.1	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.19	gi|385803590|ref|YP_005839990.1|	-	0.0028	17.6	0.0	0.0069	16.3	0.0	1.6	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_6	PF13480.1	gi|385803590|ref|YP_005839990.1|	-	0.0073	16.2	0.0	0.013	15.4	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Zip	PF02535.17	gi|385803592|ref|YP_005839992.1|	-	4.9e-06	25.7	18.8	4.9e-06	25.7	13.0	2.1	1	1	1	2	2	2	2	ZIP	Zinc	transporter
DUF3488	PF11992.3	gi|385803592|ref|YP_005839992.1|	-	0.93	8.0	8.3	0.96	8.0	3.3	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3488)
SnoaL_4	PF13577.1	gi|385803593|ref|YP_005839993.1|	-	0.00024	20.9	0.2	0.00037	20.4	0.1	1.5	1	1	0	1	1	1	1	SnoaL-like	domain
SnoaL_2	PF12680.2	gi|385803593|ref|YP_005839993.1|	-	0.0043	17.4	0.1	0.0054	17.1	0.0	1.1	1	0	0	1	1	1	1	SnoaL-like	domain
NTF2	PF02136.15	gi|385803593|ref|YP_005839993.1|	-	0.039	14.3	0.0	0.057	13.7	0.0	1.5	1	1	0	1	1	1	0	Nuclear	transport	factor	2	(NTF2)	domain
NikR_C	PF08753.6	gi|385803596|ref|YP_005839996.1|	-	3.6e-19	68.4	1.8	5.2e-19	67.9	1.3	1.2	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.16	gi|385803596|ref|YP_005839996.1|	-	4.4e-06	26.3	0.0	7.6e-06	25.6	0.0	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
Arc	PF03869.9	gi|385803596|ref|YP_005839996.1|	-	0.13	11.9	0.0	0.26	10.9	0.0	1.5	1	0	0	1	1	1	0	Arc-like	DNA	binding	domain
UPF0104	PF03706.8	gi|385803597|ref|YP_005839997.1|	-	1.1e-30	106.9	41.9	1.5e-30	106.4	29.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0104)
AIM24	PF01987.12	gi|385803598|ref|YP_005839998.1|	-	9e-57	191.9	0.8	1e-56	191.8	0.6	1.0	1	0	0	1	1	1	1	Mitochondrial	biogenesis	AIM24
HxlR	PF01638.12	gi|385803600|ref|YP_005840000.1|	-	3e-24	84.4	0.0	3.6e-24	84.1	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
MarR	PF01047.17	gi|385803600|ref|YP_005840000.1|	-	0.051	13.2	0.0	0.079	12.6	0.0	1.3	1	0	0	1	1	1	0	MarR	family
Isochorismatase	PF00857.15	gi|385803601|ref|YP_005840001.1|	-	4.7e-34	117.8	0.1	6e-34	117.4	0.1	1.1	1	0	0	1	1	1	1	Isochorismatase	family
Pentapeptide	PF00805.17	gi|385803603|ref|YP_005840003.1|	-	1.7e-51	170.7	44.8	6.4e-15	54.0	3.6	4.2	1	1	4	5	5	5	5	Pentapeptide	repeats	(8	copies)
Pentapeptide_3	PF13576.1	gi|385803603|ref|YP_005840003.1|	-	1e-19	70.1	0.0	3.5e-06	26.8	0.0	3.9	1	1	3	4	4	4	4	Pentapeptide	repeats	(9	copies)
Pentapeptide_4	PF13599.1	gi|385803603|ref|YP_005840003.1|	-	4.2e-18	64.9	0.0	2.3e-10	40.1	0.0	2.2	1	1	1	2	2	2	2	Pentapeptide	repeats	(9	copies)
DUF4193	PF13834.1	gi|385803603|ref|YP_005840003.1|	-	0.012	15.8	1.0	21	5.3	0.0	4.4	1	1	3	4	4	4	0	Domain	of	unknown	function	(DUF4193)
Methyltransf_12	PF08242.7	gi|385803603|ref|YP_005840003.1|	-	0.019	15.4	0.5	3.5	8.1	0.0	2.4	1	1	1	2	2	2	0	Methyltransferase	domain
SIC	PF03482.8	gi|385803603|ref|YP_005840003.1|	-	0.021	14.4	1.0	3.6	7.1	0.1	2.3	1	1	1	2	2	2	0	sic	protein
Ldl_recept_b	PF00058.12	gi|385803603|ref|YP_005840003.1|	-	0.34	11.2	2.7	8.2	6.8	0.1	3.3	2	1	2	4	4	4	0	Low-density	lipoprotein	receptor	repeat	class	B
DUF202	PF02656.10	gi|385803604|ref|YP_005840004.1|	-	1.4	9.1	4.5	4.1	7.6	0.1	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF202)
Multi_Drug_Res	PF00893.14	gi|385803605|ref|YP_005840005.1|	-	2.2e-26	92.1	5.6	2.8e-26	91.8	3.9	1.2	1	0	0	1	1	1	1	Small	Multidrug	Resistance	protein
EamA	PF00892.15	gi|385803605|ref|YP_005840005.1|	-	0.72	9.9	8.6	1.1	9.3	5.9	1.5	1	1	0	1	1	1	0	EamA-like	transporter	family
EmrE	PF13536.1	gi|385803605|ref|YP_005840005.1|	-	2.4	8.3	10.5	7.2	6.8	7.3	1.7	1	1	0	1	1	1	0	Multidrug	resistance	efflux	transporter
MFS_1	PF07690.11	gi|385803606|ref|YP_005840006.1|	-	2.1e-25	89.2	63.4	1.4e-19	70.0	22.3	2.2	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Mrr_cat	PF04471.7	gi|385803607|ref|YP_005840007.1|	-	2.1e-27	95.2	0.0	4e-27	94.2	0.0	1.5	1	0	0	1	1	1	1	Restriction	endonuclease
zf-ribbon_3	PF13248.1	gi|385803607|ref|YP_005840007.1|	-	0.0018	17.4	2.2	0.0045	16.1	1.5	1.6	1	0	0	1	1	1	1	zinc-ribbon	domain
Siva	PF05458.7	gi|385803607|ref|YP_005840007.1|	-	0.086	12.4	1.2	0.13	11.8	0.8	1.3	1	0	0	1	1	1	0	Cd27	binding	protein	(Siva)
Zn_Tnp_IS1595	PF12760.2	gi|385803607|ref|YP_005840007.1|	-	0.17	11.6	0.2	0.17	11.6	0.2	3.1	1	1	2	3	3	3	0	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|385803607|ref|YP_005840007.1|	-	0.25	10.9	2.7	0.66	9.5	1.9	1.7	1	0	0	1	1	1	0	zinc-ribbon	domain
NOB1_Zn_bind	PF08772.6	gi|385803607|ref|YP_005840007.1|	-	0.31	10.8	5.3	0.13	12.0	2.0	1.7	1	1	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
DZR	PF12773.2	gi|385803607|ref|YP_005840007.1|	-	0.5	10.2	8.0	2.1	8.2	5.6	1.9	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-RING_5	PF14634.1	gi|385803607|ref|YP_005840007.1|	-	7.9	6.3	10.7	12	5.6	5.5	2.3	2	0	0	2	2	2	0	zinc-RING	finger	domain
AA_permease_2	PF13520.1	gi|385803608|ref|YP_005840008.1|	-	3.3e-47	160.9	44.6	4e-47	160.7	30.9	1.0	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|385803608|ref|YP_005840008.1|	-	2.5e-40	138.2	44.1	3.1e-40	137.9	30.6	1.0	1	0	0	1	1	1	1	Amino	acid	permease
Spore_permease	PF03845.8	gi|385803608|ref|YP_005840008.1|	-	7.8e-08	31.3	13.6	7.8e-08	31.3	9.4	3.2	3	1	0	3	3	3	2	Spore	germination	protein
AA_permease_C	PF13906.1	gi|385803608|ref|YP_005840008.1|	-	0.02	14.7	1.5	0.02	14.7	1.0	2.9	2	0	0	2	2	2	0	C-terminus	of	AA_permease
Usp	PF00582.21	gi|385803609|ref|YP_005840009.1|	-	0.00041	20.5	0.5	1.6	8.9	0.0	2.8	2	1	0	2	2	2	2	Universal	stress	protein	family
PIG-L	PF02585.12	gi|385803609|ref|YP_005840009.1|	-	0.11	12.9	0.0	0.18	12.3	0.0	1.4	1	0	0	1	1	1	0	GlcNAc-PI	de-N-acetylase
Usp	PF00582.21	gi|385803610|ref|YP_005840010.1|	-	8.4e-13	48.7	3.7	3.9e-11	43.2	0.4	2.3	2	1	0	2	2	2	2	Universal	stress	protein	family
Acetyltransf_10	PF13673.1	gi|385803610|ref|YP_005840010.1|	-	0.023	14.8	0.0	0.049	13.7	0.0	1.7	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Meth_synt_2	PF01717.13	gi|385803611|ref|YP_005840011.1|	-	3.5e-153	509.2	0.0	2.4e-141	470.4	0.0	2.2	2	0	0	2	2	2	2	Cobalamin-independent	synthase,	Catalytic	domain
Meth_synt_1	PF08267.7	gi|385803611|ref|YP_005840011.1|	-	7.8e-137	455.6	0.0	3e-121	404.4	0.0	3.1	3	0	0	3	3	3	3	Cobalamin-independent	synthase,	N-terminal	domain
URO-D	PF01208.12	gi|385803611|ref|YP_005840011.1|	-	0.0031	16.4	0.3	0.57	9.0	0.0	2.6	3	0	0	3	3	3	2	Uroporphyrinogen	decarboxylase	(URO-D)
OCD_Mu_crystall	PF02423.10	gi|385803612|ref|YP_005840012.1|	-	2.5e-56	190.7	6.6	2.8e-56	190.5	4.6	1.0	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
Shikimate_DH	PF01488.15	gi|385803612|ref|YP_005840012.1|	-	0.0025	17.9	0.0	0.012	15.6	0.0	2.1	1	1	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
Zip	PF02535.17	gi|385803613|ref|YP_005840013.1|	-	4.9e-20	71.7	7.7	4.9e-20	71.7	5.3	2.5	2	1	0	2	2	2	2	ZIP	Zinc	transporter
Hydantoinase_B	PF02538.9	gi|385803615|ref|YP_005840015.1|	-	2.6e-164	547.3	0.0	3e-164	547.1	0.0	1.0	1	0	0	1	1	1	1	Hydantoinase	B/oxoprolinase
Hydantoinase_A	PF01968.13	gi|385803616|ref|YP_005840016.1|	-	1.1e-97	326.6	7.9	1.3e-95	319.8	1.2	2.3	2	0	0	2	2	2	2	Hydantoinase/oxoprolinase
Hydant_A_N	PF05378.8	gi|385803616|ref|YP_005840016.1|	-	5.6e-54	182.3	5.3	1.1e-53	181.3	0.8	2.5	2	0	0	2	2	2	1	Hydantoinase/oxoprolinase	N-terminal	region
BcrAD_BadFG	PF01869.15	gi|385803616|ref|YP_005840016.1|	-	0.017	14.4	0.3	0.63	9.2	0.1	2.2	2	0	0	2	2	2	0	BadF/BadG/BcrA/BcrD	ATPase	family
MutL	PF13941.1	gi|385803616|ref|YP_005840016.1|	-	0.16	10.2	9.7	0.05	11.9	0.4	2.7	3	0	0	3	3	3	0	MutL	protein
FtsA	PF14450.1	gi|385803616|ref|YP_005840016.1|	-	0.4	10.5	7.8	2.2	8.1	0.4	2.9	3	0	0	3	3	3	0	Cell	division	protein	FtsA
HNH	PF01844.18	gi|385803617|ref|YP_005840017.1|	-	0.0085	15.9	1.1	0.026	14.3	0.7	1.8	1	1	0	1	1	1	1	HNH	endonuclease
DUF3505	PF12013.3	gi|385803617|ref|YP_005840017.1|	-	0.14	12.4	1.6	0.14	12.4	0.1	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3505)
zf-dskA_traR	PF01258.12	gi|385803617|ref|YP_005840017.1|	-	0.25	11.1	1.7	5.4	6.8	0.1	2.2	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
ABC_tran	PF00005.22	gi|385803618|ref|YP_005840018.1|	-	6.3e-35	120.4	0.0	9.3e-35	119.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.5	gi|385803618|ref|YP_005840018.1|	-	1.4e-10	41.0	1.1	6.5e-10	38.8	0.1	2.4	2	0	0	2	2	2	1	TOBE	domain
AAA_21	PF13304.1	gi|385803618|ref|YP_005840018.1|	-	7.7e-07	29.3	0.0	0.0016	18.5	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
TOBE	PF03459.12	gi|385803618|ref|YP_005840018.1|	-	0.0069	16.4	0.0	0.044	13.8	0.0	2.3	2	0	0	2	2	2	1	TOBE	domain
AAA	PF00004.24	gi|385803618|ref|YP_005840018.1|	-	0.0087	16.2	1.2	0.044	13.9	0.8	2.3	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|385803618|ref|YP_005840018.1|	-	0.014	15.5	1.7	0.097	12.8	1.2	2.1	1	1	0	1	1	1	0	AAA	domain
Rad17	PF03215.10	gi|385803618|ref|YP_005840018.1|	-	0.015	13.9	0.1	0.03	12.9	0.0	1.3	1	1	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
AAA_16	PF13191.1	gi|385803618|ref|YP_005840018.1|	-	0.024	14.6	0.6	0.044	13.7	0.3	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_25	PF13481.1	gi|385803618|ref|YP_005840018.1|	-	0.026	13.9	0.0	0.13	11.6	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_28	PF13521.1	gi|385803618|ref|YP_005840018.1|	-	0.051	13.5	0.0	0.1	12.5	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|385803618|ref|YP_005840018.1|	-	0.062	12.4	0.0	0.095	11.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_17	PF13207.1	gi|385803618|ref|YP_005840018.1|	-	0.066	14.0	0.2	0.14	12.9	0.1	1.6	1	0	0	1	1	1	0	AAA	domain
SMC_N	PF02463.14	gi|385803618|ref|YP_005840018.1|	-	0.071	12.3	0.1	2.3	7.3	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
PRK	PF00485.13	gi|385803618|ref|YP_005840018.1|	-	0.1	12.1	0.0	0.18	11.3	0.0	1.5	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_33	PF13671.1	gi|385803618|ref|YP_005840018.1|	-	0.14	11.9	0.4	0.27	11.1	0.3	1.7	1	1	0	1	1	1	0	AAA	domain
BPD_transp_1	PF00528.17	gi|385803619|ref|YP_005840019.1|	-	4e-09	36.2	13.9	4e-09	36.2	9.6	2.6	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|385803620|ref|YP_005840020.1|	-	7.1e-13	48.4	19.9	7.1e-13	48.4	13.8	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_6	PF13343.1	gi|385803621|ref|YP_005840021.1|	-	2.5e-19	69.5	0.1	4.2e-19	68.8	0.0	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.1	gi|385803621|ref|YP_005840021.1|	-	8.7e-18	65.0	1.7	1.1e-17	64.6	1.0	1.3	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|385803621|ref|YP_005840021.1|	-	1.8e-10	41.0	4.5	2.6e-10	40.5	2.7	1.6	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.1	gi|385803621|ref|YP_005840021.1|	-	7.3e-08	32.3	0.1	1.3e-07	31.4	0.1	1.4	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
Como_LCP	PF02247.11	gi|385803621|ref|YP_005840021.1|	-	0.089	11.1	0.0	0.14	10.4	0.0	1.2	1	0	0	1	1	1	0	Large	coat	protein
MOSC	PF03473.12	gi|385803622|ref|YP_005840022.1|	-	4.2e-15	55.3	0.0	7.5e-15	54.5	0.0	1.4	1	0	0	1	1	1	1	MOSC	domain
MOSC_N	PF03476.11	gi|385803622|ref|YP_005840022.1|	-	2.5e-12	46.5	0.0	6.1e-12	45.3	0.0	1.7	1	1	0	1	1	1	1	MOSC	N-terminal	beta	barrel	domain
Spore_YtfJ	PF09579.5	gi|385803624|ref|YP_005840024.1|	-	0.095	12.5	2.8	0.13	12.0	1.9	1.2	1	0	0	1	1	1	0	Sporulation	protein	YtfJ	(Spore_YtfJ)
E1-E2_ATPase	PF00122.15	gi|385803625|ref|YP_005840025.1|	-	7.9e-58	195.2	0.9	1.8e-57	194.0	0.6	1.7	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.21	gi|385803625|ref|YP_005840025.1|	-	1e-44	153.5	3.0	1.7e-44	152.7	2.1	1.4	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.21	gi|385803625|ref|YP_005840025.1|	-	6.9e-23	80.5	3.3	1.6e-10	40.9	0.0	3.9	5	1	0	5	5	5	2	Heavy-metal-associated	domain
HAD	PF12710.2	gi|385803625|ref|YP_005840025.1|	-	6.1e-18	65.6	0.0	1.4e-17	64.4	0.0	1.7	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|385803625|ref|YP_005840025.1|	-	0.0083	15.7	2.0	0.12	11.9	0.3	2.6	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HipA_N	PF07805.7	gi|385803625|ref|YP_005840025.1|	-	0.047	13.9	0.0	0.12	12.6	0.0	1.6	1	0	0	1	1	1	0	HipA-like	N-terminal	domain
Pox_A14	PF05767.7	gi|385803625|ref|YP_005840025.1|	-	0.084	12.8	0.3	0.28	11.1	0.2	1.9	1	0	0	1	1	1	0	Poxvirus	virion	envelope	protein	A14
zf-LITAF-like	PF10601.4	gi|385803625|ref|YP_005840025.1|	-	1.8	8.4	6.9	0.83	9.5	0.0	3.0	3	0	0	3	3	3	0	LITAF-like	zinc	ribbon	domain
DUF4385	PF14328.1	gi|385803627|ref|YP_005840027.1|	-	2.4e-57	192.9	4.7	2.9e-57	192.6	3.3	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4385)
Transglut_core	PF01841.14	gi|385803628|ref|YP_005840028.1|	-	9.7e-28	96.6	0.3	3.6e-27	94.8	0.0	2.2	3	0	0	3	3	3	1	Transglutaminase-like	superfamily
DUF4129	PF13559.1	gi|385803628|ref|YP_005840028.1|	-	9.1e-08	31.9	0.3	2.6e-07	30.5	0.0	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4129)
DUF3488	PF11992.3	gi|385803628|ref|YP_005840028.1|	-	3.9e-06	25.7	3.0	6.4e-06	25.0	2.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3488)
DUF4480	PF13715.1	gi|385803628|ref|YP_005840028.1|	-	0.00068	19.6	9.5	0.95	9.5	0.4	3.8	3	0	0	3	3	3	3	Domain	of	unknown	function	(DUF4480)
Transglut_core3	PF13471.1	gi|385803628|ref|YP_005840028.1|	-	0.0029	17.4	0.0	0.0079	15.9	0.0	1.7	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
X	PF00739.14	gi|385803628|ref|YP_005840028.1|	-	0.46	10.3	2.5	25	4.7	1.5	2.6	2	0	0	2	2	2	0	Trans-activation	protein	X
DUF58	PF01882.13	gi|385803630|ref|YP_005840030.1|	-	8e-16	57.9	0.0	1.9e-15	56.7	0.0	1.8	1	1	0	1	1	1	1	Protein	of	unknown	function	DUF58
DUF11	PF01345.13	gi|385803630|ref|YP_005840030.1|	-	1.3e-05	25.1	1.0	1.3e-05	25.1	0.7	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF11
TRAP_beta	PF05753.9	gi|385803630|ref|YP_005840030.1|	-	0.00022	20.4	0.0	0.00035	19.7	0.0	1.3	1	0	0	1	1	1	1	Translocon-associated	protein	beta	(TRAPB)
NPCBM_assoc	PF10633.4	gi|385803630|ref|YP_005840030.1|	-	0.00083	19.3	0.2	0.004	17.1	0.1	2.2	2	0	0	2	2	2	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
CARDB	PF07705.6	gi|385803630|ref|YP_005840030.1|	-	0.0064	16.5	0.1	0.05	13.6	0.0	2.4	1	1	2	3	3	3	1	CARDB
LPAM_2	PF13627.1	gi|385803630|ref|YP_005840030.1|	-	0.85	9.4	3.8	2.2	8.0	2.7	1.8	1	0	0	1	1	1	0	Prokaryotic	lipoprotein-attachment	site
AAA_3	PF07726.6	gi|385803632|ref|YP_005840032.1|	-	1.9e-65	218.4	0.1	3e-65	217.7	0.0	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|385803632|ref|YP_005840032.1|	-	3.9e-14	52.5	0.0	9.7e-14	51.2	0.0	1.7	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
MCM	PF00493.18	gi|385803632|ref|YP_005840032.1|	-	5.1e-07	28.7	0.0	0.00012	20.9	0.0	2.2	2	0	0	2	2	2	2	MCM2/3/5	family
Sigma54_activat	PF00158.21	gi|385803632|ref|YP_005840032.1|	-	2.8e-05	23.6	0.0	0.0001	21.8	0.0	1.8	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA	PF00004.24	gi|385803632|ref|YP_005840032.1|	-	4.5e-05	23.6	0.0	0.00018	21.7	0.0	2.1	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.7	gi|385803632|ref|YP_005840032.1|	-	0.022	13.7	0.1	0.28	10.1	0.0	2.5	1	1	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_19	PF13245.1	gi|385803632|ref|YP_005840032.1|	-	0.067	12.9	0.1	0.17	11.6	0.0	1.6	1	0	0	1	1	1	0	Part	of	AAA	domain
ODV-E18	PF10717.4	gi|385803633|ref|YP_005840033.1|	-	0.29	10.5	1.2	0.48	9.8	0.2	1.8	2	0	0	2	2	2	0	Occlusion-derived	virus	envelope	protein	ODV-E18
DUF3225	PF11533.3	gi|385803634|ref|YP_005840034.1|	-	0.0024	17.5	0.0	0.0029	17.2	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3225)
SnoaL_3	PF13474.1	gi|385803634|ref|YP_005840034.1|	-	0.0025	17.8	0.4	0.0031	17.5	0.3	1.1	1	0	0	1	1	1	1	SnoaL-like	domain
NTF2	PF02136.15	gi|385803634|ref|YP_005840034.1|	-	0.046	14.0	0.0	0.065	13.6	0.0	1.2	1	0	0	1	1	1	0	Nuclear	transport	factor	2	(NTF2)	domain
Coat_X	PF07552.6	gi|385803634|ref|YP_005840034.1|	-	0.27	11.0	1.4	0.58	9.9	0.1	2.0	1	1	1	2	2	2	0	Spore	Coat	Protein	X	and	V	domain
bPH_2	PF03703.9	gi|385803635|ref|YP_005840035.1|	-	2e-13	50.1	0.3	2e-13	50.1	0.2	1.8	3	0	0	3	3	3	1	Bacterial	PH	domain
bPH_2	PF03703.9	gi|385803636|ref|YP_005840036.1|	-	2.3e-17	62.7	0.0	3.9e-17	62.0	0.0	1.4	1	0	0	1	1	1	1	Bacterial	PH	domain
HTH_45	PF14947.1	gi|385803637|ref|YP_005840037.1|	-	9.5e-06	25.3	0.0	2e-05	24.2	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.1	gi|385803637|ref|YP_005840037.1|	-	0.00061	20.0	0.1	0.0046	17.2	0.0	2.3	2	1	0	2	2	2	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|385803637|ref|YP_005840037.1|	-	0.013	15.1	0.0	0.024	14.3	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Mrr_N	PF14338.1	gi|385803637|ref|YP_005840037.1|	-	0.1	12.6	0.0	0.43	10.7	0.0	2.2	2	1	0	2	2	2	0	Mrr	N-terminal	domain
Pyridox_oxidase	PF01243.15	gi|385803638|ref|YP_005840038.1|	-	2.9e-13	49.6	0.1	4.4e-13	49.0	0.1	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyrid_oxidase_2	PF13883.1	gi|385803638|ref|YP_005840038.1|	-	0.033	13.9	0.1	0.042	13.6	0.0	1.2	1	0	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase
DUF2255	PF10012.4	gi|385803638|ref|YP_005840038.1|	-	0.13	12.2	0.2	0.2	11.6	0.1	1.4	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2255)
Acetyltransf_1	PF00583.19	gi|385803639|ref|YP_005840039.1|	-	1.3e-06	28.3	0.0	1.9e-06	27.7	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.1	gi|385803639|ref|YP_005840039.1|	-	0.02	15.0	0.0	0.032	14.3	0.0	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
DUF21	PF01595.15	gi|385803640|ref|YP_005840040.1|	-	1.2e-26	93.1	0.5	1.7e-26	92.6	0.3	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF21
CBS	PF00571.23	gi|385803640|ref|YP_005840040.1|	-	1.9e-10	40.3	0.0	5.7e-07	29.2	0.1	2.4	2	0	0	2	2	2	2	CBS	domain
Sigma70_r3	PF04539.11	gi|385803640|ref|YP_005840040.1|	-	0.048	13.5	1.1	0.087	12.7	0.1	1.9	2	0	0	2	2	2	0	Sigma-70	region	3
Hydrolase_6	PF13344.1	gi|385803641|ref|YP_005840041.1|	-	2.4e-26	91.5	0.0	5.6e-26	90.3	0.0	1.6	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|385803641|ref|YP_005840041.1|	-	3.5e-20	71.5	0.0	9.4e-20	70.1	0.0	1.8	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.21	gi|385803641|ref|YP_005840041.1|	-	5.1e-08	33.5	0.2	1.1e-06	29.2	0.1	2.3	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.1	gi|385803641|ref|YP_005840041.1|	-	2.2e-07	31.2	0.0	8.9e-05	22.7	0.0	2.3	1	1	0	2	2	2	2	Haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|385803641|ref|YP_005840041.1|	-	0.097	12.8	0.0	0.29	11.2	0.0	1.8	1	1	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
Peptidase_S9	PF00326.16	gi|385803642|ref|YP_005840042.1|	-	1.7e-43	148.3	0.1	2.6e-43	147.7	0.0	1.3	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
Abhydrolase_5	PF12695.2	gi|385803642|ref|YP_005840042.1|	-	2.2e-11	43.6	0.0	9e-11	41.7	0.0	1.9	2	0	0	2	2	2	1	Alpha/beta	hydrolase	family
Abhydrolase_6	PF12697.2	gi|385803642|ref|YP_005840042.1|	-	1.3e-06	28.5	0.0	1e-05	25.5	0.0	2.1	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Peptidase_S9_N	PF02897.10	gi|385803642|ref|YP_005840042.1|	-	1.8e-06	26.8	0.6	2.3e-06	26.4	0.0	1.4	2	0	0	2	2	2	1	Prolyl	oligopeptidase,	N-terminal	beta-propeller	domain
PD40	PF07676.7	gi|385803642|ref|YP_005840042.1|	-	1.1e-05	24.9	1.7	0.45	10.2	0.0	5.3	5	0	0	5	5	5	1	WD40-like	Beta	Propeller	Repeat
Peptidase_S15	PF02129.13	gi|385803642|ref|YP_005840042.1|	-	1.4e-05	24.6	0.1	0.14	11.5	0.0	2.3	1	1	1	2	2	2	2	X-Pro	dipeptidyl-peptidase	(S15	family)
Pectate_lyase22	PF14583.1	gi|385803642|ref|YP_005840042.1|	-	7.1e-05	21.4	0.1	0.008	14.6	0.0	2.4	2	0	0	2	2	2	1	Oligogalacturonate	lyase
Peptidase_S28	PF05577.7	gi|385803642|ref|YP_005840042.1|	-	0.00027	19.6	0.0	0.00049	18.7	0.0	1.3	1	0	0	1	1	1	1	Serine	carboxypeptidase	S28
DPPIV_N	PF00930.16	gi|385803642|ref|YP_005840042.1|	-	0.0005	18.7	0.1	0.71	8.3	0.0	3.1	1	1	1	3	3	3	2	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
Abhydrolase_1	PF00561.15	gi|385803642|ref|YP_005840042.1|	-	0.00082	18.9	0.2	0.88	9.0	0.0	2.3	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
eIF2A	PF08662.6	gi|385803642|ref|YP_005840042.1|	-	0.013	15.1	0.0	3.8	7.1	0.0	2.3	1	1	1	2	2	2	0	Eukaryotic	translation	initiation	factor	eIF2A
Esterase	PF00756.15	gi|385803642|ref|YP_005840042.1|	-	0.021	14.2	0.0	0.076	12.4	0.0	2.1	2	0	0	2	2	2	0	Putative	esterase
Abhydrolase_2	PF02230.11	gi|385803642|ref|YP_005840042.1|	-	0.038	13.4	0.0	0.25	10.7	0.0	2.0	2	0	0	2	2	2	0	Phospholipase/Carboxylesterase
YqcI_YcgG	PF08892.6	gi|385803644|ref|YP_005840044.1|	-	4.3e-77	258.5	0.0	5e-77	258.3	0.0	1.0	1	0	0	1	1	1	1	YqcI/YcgG	family
Isochorismatase	PF00857.15	gi|385803645|ref|YP_005840045.1|	-	4.9e-33	114.4	0.0	5.8e-33	114.2	0.0	1.1	1	0	0	1	1	1	1	Isochorismatase	family
AIM24	PF01987.12	gi|385803646|ref|YP_005840046.1|	-	1.3e-39	135.8	0.1	1.5e-39	135.6	0.1	1.0	1	0	0	1	1	1	1	Mitochondrial	biogenesis	AIM24
Ribosomal_S8	PF00410.14	gi|385803647|ref|YP_005840047.1|	-	0.2	11.5	0.1	0.41	10.4	0.0	1.4	1	0	0	1	1	1	0	Ribosomal	protein	S8
DDE_Tnp_IS66	PF03050.9	gi|385803648|ref|YP_005840048.1|	-	1.6e-53	181.6	1.7	3.2e-53	180.6	0.0	1.9	2	0	0	2	2	2	1	Transposase	IS66	family
DUF904	PF06005.7	gi|385803648|ref|YP_005840048.1|	-	4.8e-10	39.5	5.2	1.5e-09	37.9	3.6	1.8	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF904)
bZIP_1	PF00170.16	gi|385803648|ref|YP_005840048.1|	-	0.00025	20.9	7.9	0.00051	19.9	5.5	1.5	1	0	0	1	1	1	1	bZIP	transcription	factor
CASP_C	PF08172.7	gi|385803648|ref|YP_005840048.1|	-	0.00026	20.0	1.7	0.00054	19.0	1.2	1.4	1	0	0	1	1	1	1	CASP	C	terminal
DUF972	PF06156.8	gi|385803648|ref|YP_005840048.1|	-	0.0004	20.6	4.5	0.00075	19.8	2.7	1.7	2	0	0	2	2	1	1	Protein	of	unknown	function	(DUF972)
zf-IS66	PF13005.2	gi|385803648|ref|YP_005840048.1|	-	0.0031	17.4	8.9	0.01	15.8	6.2	2.0	1	1	0	1	1	1	1	zinc-finger	binding	domain	of	transposase	IS66
Striatin	PF08232.7	gi|385803648|ref|YP_005840048.1|	-	0.0036	17.5	2.8	0.0077	16.5	1.9	1.5	1	0	0	1	1	1	1	Striatin	family
IncA	PF04156.9	gi|385803648|ref|YP_005840048.1|	-	0.01	15.4	6.0	0.021	14.4	4.2	1.4	1	0	0	1	1	1	0	IncA	protein
DivIC	PF04977.10	gi|385803648|ref|YP_005840048.1|	-	0.014	14.8	4.3	0.014	14.8	3.0	2.1	2	0	0	2	2	1	0	Septum	formation	initiator
GAS	PF13851.1	gi|385803648|ref|YP_005840048.1|	-	0.021	14.0	5.7	0.039	13.1	3.9	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
DUF4201	PF13870.1	gi|385803648|ref|YP_005840048.1|	-	0.024	14.0	5.1	0.042	13.2	3.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
CENP-H	PF05837.7	gi|385803648|ref|YP_005840048.1|	-	0.026	14.6	2.8	0.057	13.5	1.9	1.5	1	0	0	1	1	1	0	Centromere	protein	H	(CENP-H)
Transposase_mut	PF00872.13	gi|385803648|ref|YP_005840048.1|	-	0.036	12.6	0.0	0.07	11.6	0.0	1.4	1	0	0	1	1	1	0	Transposase,	Mutator	family
Atg14	PF10186.4	gi|385803648|ref|YP_005840048.1|	-	0.038	12.9	3.8	0.076	11.9	2.6	1.4	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
eIF-3c_N	PF05470.7	gi|385803648|ref|YP_005840048.1|	-	0.039	12.0	0.1	0.04	12.0	0.1	1.1	1	0	0	1	1	1	0	Eukaryotic	translation	initiation	factor	3	subunit	8	N-terminus
TMF_DNA_bd	PF12329.3	gi|385803648|ref|YP_005840048.1|	-	0.05	13.4	9.4	0.12	12.2	6.5	1.5	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
ADIP	PF11559.3	gi|385803648|ref|YP_005840048.1|	-	0.053	13.4	6.8	0.099	12.5	4.7	1.4	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
DDE_Tnp_IS240	PF13610.1	gi|385803648|ref|YP_005840048.1|	-	0.089	12.7	2.0	0.2	11.6	0.0	2.2	2	1	0	2	2	2	0	DDE	domain
DUF1875	PF08961.5	gi|385803648|ref|YP_005840048.1|	-	0.089	12.0	3.6	0.18	11.0	2.5	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1875)
Synaptobrevin	PF00957.16	gi|385803648|ref|YP_005840048.1|	-	0.11	12.1	2.5	0.2	11.2	1.7	1.3	1	0	0	1	1	1	0	Synaptobrevin
Fmp27_WPPW	PF10359.4	gi|385803648|ref|YP_005840048.1|	-	0.14	10.5	2.7	0.19	10.0	1.9	1.1	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
V_ATPase_I	PF01496.14	gi|385803648|ref|YP_005840048.1|	-	0.15	9.8	1.5	0.2	9.4	1.1	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Sipho_Gp157	PF05565.6	gi|385803648|ref|YP_005840048.1|	-	0.15	11.6	3.9	0.25	10.9	2.7	1.3	1	0	0	1	1	1	0	Siphovirus	Gp157
TSC22	PF01166.13	gi|385803648|ref|YP_005840048.1|	-	0.2	11.6	13.9	0.087	12.7	3.7	3.2	2	1	1	3	3	3	0	TSC-22/dip/bun	family
Herpes_BLRF2	PF05812.7	gi|385803648|ref|YP_005840048.1|	-	0.21	11.4	6.5	3.1	7.6	0.1	2.6	1	1	1	2	2	2	0	Herpesvirus	BLRF2	protein
bZIP_2	PF07716.10	gi|385803648|ref|YP_005840048.1|	-	0.25	11.1	12.5	0.25	11.1	6.0	2.4	1	1	1	2	2	2	0	Basic	region	leucine	zipper
Spc24	PF08286.6	gi|385803648|ref|YP_005840048.1|	-	0.53	9.9	4.4	1	9.1	3.0	1.5	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
NYD-SP28_assoc	PF14775.1	gi|385803648|ref|YP_005840048.1|	-	0.55	9.9	11.2	3	7.6	2.5	2.7	1	1	1	2	2	2	0	Sperm	tail	C-terminal	domain
APG6	PF04111.7	gi|385803648|ref|YP_005840048.1|	-	0.6	9.1	4.1	1	8.3	2.8	1.3	1	0	0	1	1	1	0	Autophagy	protein	Apg6
EMP24_GP25L	PF01105.19	gi|385803648|ref|YP_005840048.1|	-	2	8.0	4.3	3.8	7.2	3.0	1.4	1	0	0	1	1	1	0	emp24/gp25L/p24	family/GOLD
HALZ	PF02183.13	gi|385803648|ref|YP_005840048.1|	-	3.6	7.3	10.9	0.79	9.4	4.6	2.1	2	0	0	2	2	2	0	Homeobox	associated	leucine	zipper
SlyX	PF04102.7	gi|385803648|ref|YP_005840048.1|	-	3.8	7.9	7.4	12	6.3	5.1	1.9	1	1	0	1	1	1	0	SlyX
KfrA_N	PF11740.3	gi|385803648|ref|YP_005840048.1|	-	8.5	6.8	10.7	9.5	6.6	2.2	2.9	2	1	0	2	2	2	0	Plasmid	replication	region	DNA-binding	N-term
TauE	PF01925.14	gi|385803649|ref|YP_005840049.1|	-	1.5e-22	80.2	36.6	1.7e-22	80.0	25.4	1.0	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
DUF2919	PF11143.3	gi|385803649|ref|YP_005840049.1|	-	0.42	10.4	5.8	1.8	8.3	0.1	3.1	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2919)
MFS_1	PF07690.11	gi|385803651|ref|YP_005840051.1|	-	2.1e-16	59.5	55.7	6.5e-11	41.5	21.3	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DUF1424	PF07232.6	gi|385803651|ref|YP_005840051.1|	-	0.091	11.5	0.0	0.14	10.9	0.0	1.1	1	0	0	1	1	1	0	Putative	rep	protein	(DUF1424)
RHH_1	PF01402.16	gi|385803652|ref|YP_005840052.1|	-	0.001	18.8	0.1	0.0019	18.0	0.0	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RepB-RCR_reg	PF10723.4	gi|385803652|ref|YP_005840052.1|	-	0.027	14.2	0.8	0.045	13.4	0.6	1.4	1	0	0	1	1	1	0	Replication	regulatory	protein	RepB
Rubrerythrin	PF02915.12	gi|385803653|ref|YP_005840053.1|	-	0.026	14.8	0.5	0.097	12.9	0.1	1.9	2	0	0	2	2	2	0	Rubrerythrin
Amidohydro_2	PF04909.9	gi|385803653|ref|YP_005840053.1|	-	0.037	13.5	0.1	0.044	13.3	0.1	1.3	1	0	0	1	1	1	0	Amidohydrolase
DUF892	PF05974.7	gi|385803653|ref|YP_005840053.1|	-	0.08	12.7	0.8	3	7.6	0.1	2.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF892)
Lactamase_B	PF00753.22	gi|385803654|ref|YP_005840054.1|	-	3.1e-19	69.4	5.0	4.6e-19	68.8	3.5	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Rhodanese	PF00581.15	gi|385803654|ref|YP_005840054.1|	-	1.3e-08	35.1	0.0	2.7e-08	34.1	0.0	1.5	1	0	0	1	1	1	1	Rhodanese-like	domain
Lactamase_B_2	PF12706.2	gi|385803654|ref|YP_005840054.1|	-	0.0021	17.6	0.1	0.023	14.2	0.0	2.2	2	1	0	2	2	2	1	Beta-lactamase	superfamily	domain
DUF1289	PF06945.8	gi|385803655|ref|YP_005840055.1|	-	3.6e-17	61.5	1.2	4.8e-17	61.1	0.9	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1289)
DUF2848	PF11010.3	gi|385803655|ref|YP_005840055.1|	-	0.027	13.9	0.1	0.072	12.5	0.0	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2848)
Rad50_zn_hook	PF04423.9	gi|385803655|ref|YP_005840055.1|	-	0.12	11.8	2.6	1.9	8.0	0.0	2.2	2	0	0	2	2	2	0	Rad50	zinc	hook	motif
MFS_1	PF07690.11	gi|385803656|ref|YP_005840056.1|	-	3.1e-32	111.6	54.3	7.5e-18	64.3	18.6	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_2	PF13347.1	gi|385803656|ref|YP_005840056.1|	-	2.6e-07	29.4	23.9	1.9e-05	23.2	12.5	3.4	1	1	0	2	2	2	2	MFS/sugar	transport	protein
Cupin_2	PF07883.6	gi|385803658|ref|YP_005840058.1|	-	2.1e-12	46.3	0.9	2.4e-12	46.1	0.6	1.1	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.14	gi|385803658|ref|YP_005840058.1|	-	7.2e-05	22.4	0.1	9.7e-05	22.0	0.0	1.2	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Auxin_BP	PF02041.11	gi|385803658|ref|YP_005840058.1|	-	0.015	14.7	0.0	0.018	14.5	0.0	1.2	1	0	0	1	1	1	0	Auxin	binding	protein
Ectoine_synth	PF06339.7	gi|385803658|ref|YP_005840058.1|	-	0.037	13.9	0.0	0.042	13.7	0.0	1.2	1	0	0	1	1	1	0	Ectoine	synthase
Cupin_3	PF05899.7	gi|385803658|ref|YP_005840058.1|	-	0.078	12.3	0.0	0.12	11.8	0.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF861)
ARD	PF03079.9	gi|385803658|ref|YP_005840058.1|	-	0.19	11.7	0.5	0.33	10.9	0.4	1.6	1	1	0	1	1	1	0	ARD/ARD'	family
VWA_2	PF13519.1	gi|385803659|ref|YP_005840059.1|	-	1.4e-18	67.5	2.3	3.7e-18	66.2	1.6	1.7	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
Mg_chelatase	PF01078.16	gi|385803659|ref|YP_005840059.1|	-	2e-12	46.6	0.0	3.7e-08	32.7	0.0	2.3	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_5	PF07728.9	gi|385803659|ref|YP_005840059.1|	-	3.4e-09	36.5	0.0	0.0002	21.1	0.0	3.2	3	0	0	3	3	3	2	AAA	domain	(dynein-related	subfamily)
MCM	PF00493.18	gi|385803659|ref|YP_005840059.1|	-	5.3e-06	25.4	0.1	4.3e-05	22.4	0.0	2.2	2	0	0	2	2	2	1	MCM2/3/5	family
AAA_16	PF13191.1	gi|385803659|ref|YP_005840059.1|	-	0.00077	19.4	0.1	0.0085	16.0	0.0	2.6	2	1	0	2	2	2	1	AAA	ATPase	domain
Sigma54_activat	PF00158.21	gi|385803659|ref|YP_005840059.1|	-	0.0015	18.0	0.0	0.2	11.1	0.0	2.3	2	0	0	2	2	2	1	Sigma-54	interaction	domain
VWA_3	PF13768.1	gi|385803659|ref|YP_005840059.1|	-	0.0018	17.9	0.3	0.0043	16.7	0.2	1.6	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
AAA_29	PF13555.1	gi|385803659|ref|YP_005840059.1|	-	0.1	12.1	0.0	0.32	10.5	0.0	1.8	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
CobN-Mg_chel	PF02514.11	gi|385803660|ref|YP_005840060.1|	-	0	1195.8	0.0	0	1195.6	0.0	1.0	1	0	0	1	1	1	1	CobN/Magnesium	Chelatase
LexA_DNA_bind	PF01726.11	gi|385803660|ref|YP_005840060.1|	-	0.2	11.2	0.0	0.51	9.9	0.0	1.7	1	0	0	1	1	1	0	LexA	DNA	binding	domain
CbiC	PF02570.10	gi|385803661|ref|YP_005840061.1|	-	1.4e-51	174.7	1.5	1.7e-51	174.4	1.0	1.1	1	0	0	1	1	1	1	Precorrin-8X	methylmutase
LKAAEAR	PF15478.1	gi|385803661|ref|YP_005840061.1|	-	0.028	14.6	0.0	0.06	13.6	0.0	1.4	1	0	0	1	1	1	0	Family	of	unknown	function	with	LKAAEAR	motif
TP_methylase	PF00590.15	gi|385803662|ref|YP_005840062.1|	-	7.8e-27	94.3	0.1	9.1e-27	94.1	0.1	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
DUF3252	PF11623.3	gi|385803662|ref|YP_005840062.1|	-	0.025	13.9	0.1	0.049	13.0	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3252)
Cob_adeno_trans	PF01923.13	gi|385803663|ref|YP_005840063.1|	-	3.1e-58	196.1	0.0	3.5e-58	195.9	0.0	1.0	1	0	0	1	1	1	1	Cobalamin	adenosyltransferase
Tropomyosin_1	PF12718.2	gi|385803663|ref|YP_005840063.1|	-	0.042	13.7	0.0	0.058	13.2	0.0	1.2	1	0	0	1	1	1	0	Tropomyosin	like
Osmo_CC	PF08946.5	gi|385803663|ref|YP_005840063.1|	-	0.3	11.1	2.9	18	5.4	0.0	2.6	2	0	0	2	2	2	0	Osmosensory	transporter	coiled	coil
ArgK	PF03308.11	gi|385803664|ref|YP_005840064.1|	-	1e-89	299.8	12.8	9.6e-89	296.6	8.9	1.9	1	1	0	1	1	1	1	ArgK	protein
cobW	PF02492.14	gi|385803664|ref|YP_005840064.1|	-	8.4e-09	35.1	1.4	8.2e-08	31.8	1.0	2.2	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_17	PF13207.1	gi|385803664|ref|YP_005840064.1|	-	5.6e-06	27.1	0.2	1.5e-05	25.8	0.0	1.9	2	1	0	2	2	1	1	AAA	domain
AAA_19	PF13245.1	gi|385803664|ref|YP_005840064.1|	-	9.7e-06	25.2	0.8	0.00017	21.2	0.1	2.7	2	0	0	2	2	2	1	Part	of	AAA	domain
SRP54	PF00448.17	gi|385803664|ref|YP_005840064.1|	-	3.5e-05	23.3	0.5	0.00012	21.5	0.3	1.9	1	1	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
AAA_16	PF13191.1	gi|385803664|ref|YP_005840064.1|	-	3.8e-05	23.7	0.1	0.00024	21.1	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_10	PF12846.2	gi|385803664|ref|YP_005840064.1|	-	0.00011	21.7	1.1	0.00025	20.5	0.8	1.7	1	1	0	1	1	1	1	AAA-like	domain
AAA_30	PF13604.1	gi|385803664|ref|YP_005840064.1|	-	0.0002	21.0	0.1	0.0005	19.7	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
NTPase_1	PF03266.10	gi|385803664|ref|YP_005840064.1|	-	0.00033	20.4	0.1	0.00094	18.9	0.0	1.8	2	0	0	2	2	1	1	NTPase
ATP_bind_1	PF03029.12	gi|385803664|ref|YP_005840064.1|	-	0.00033	20.2	0.0	0.0011	18.6	0.0	1.8	1	0	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
ABC_tran	PF00005.22	gi|385803664|ref|YP_005840064.1|	-	0.00037	20.7	0.5	0.0012	19.1	0.0	2.0	2	0	0	2	2	2	1	ABC	transporter
AAA_18	PF13238.1	gi|385803664|ref|YP_005840064.1|	-	0.00076	19.7	0.1	0.0022	18.2	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
MMR_HSR1	PF01926.18	gi|385803664|ref|YP_005840064.1|	-	0.00077	19.4	0.5	0.022	14.7	0.4	2.6	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
GTP_EFTU	PF00009.22	gi|385803664|ref|YP_005840064.1|	-	0.00078	18.9	0.1	0.97	8.8	0.0	2.4	2	0	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
DUF258	PF03193.11	gi|385803664|ref|YP_005840064.1|	-	0.0013	17.9	0.5	0.0091	15.1	0.4	2.2	1	1	0	1	1	1	1	Protein	of	unknown	function,	DUF258
KAP_NTPase	PF07693.9	gi|385803664|ref|YP_005840064.1|	-	0.0026	16.7	0.0	0.0054	15.7	0.0	1.5	1	0	0	1	1	1	1	KAP	family	P-loop	domain
AAA_22	PF13401.1	gi|385803664|ref|YP_005840064.1|	-	0.0032	17.6	0.0	0.011	15.9	0.0	1.9	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.18	gi|385803664|ref|YP_005840064.1|	-	0.0034	16.8	0.6	0.0068	15.8	0.4	1.5	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_29	PF13555.1	gi|385803664|ref|YP_005840064.1|	-	0.0036	16.7	0.1	0.0094	15.4	0.1	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Zeta_toxin	PF06414.7	gi|385803664|ref|YP_005840064.1|	-	0.0038	16.3	0.3	0.012	14.7	0.0	1.9	2	0	0	2	2	2	1	Zeta	toxin
AAA_28	PF13521.1	gi|385803664|ref|YP_005840064.1|	-	0.004	17.1	0.5	0.011	15.7	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
TrwB_AAD_bind	PF10412.4	gi|385803664|ref|YP_005840064.1|	-	0.0088	14.7	0.1	0.022	13.4	0.0	1.6	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
NB-ARC	PF00931.17	gi|385803664|ref|YP_005840064.1|	-	0.0094	14.8	0.0	0.017	14.0	0.0	1.4	1	0	0	1	1	1	1	NB-ARC	domain
KTI12	PF08433.5	gi|385803664|ref|YP_005840064.1|	-	0.01	15.0	0.1	0.06	12.5	0.0	2.0	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
AAA_33	PF13671.1	gi|385803664|ref|YP_005840064.1|	-	0.016	15.1	0.1	0.11	12.3	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
PRK	PF00485.13	gi|385803664|ref|YP_005840064.1|	-	0.025	14.1	0.0	0.079	12.5	0.0	1.9	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
MobB	PF03205.9	gi|385803664|ref|YP_005840064.1|	-	0.026	14.2	0.2	0.15	11.7	0.0	2.5	3	1	0	3	3	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NACHT	PF05729.7	gi|385803664|ref|YP_005840064.1|	-	0.036	13.7	0.0	0.13	11.9	0.0	1.9	2	0	0	2	2	2	0	NACHT	domain
AAA_25	PF13481.1	gi|385803664|ref|YP_005840064.1|	-	0.053	12.9	0.3	0.22	10.9	0.2	2.0	1	1	0	1	1	1	0	AAA	domain
DUF87	PF01935.12	gi|385803664|ref|YP_005840064.1|	-	0.059	13.1	0.4	0.35	10.6	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF87
AAA_5	PF07728.9	gi|385803664|ref|YP_005840064.1|	-	0.069	12.8	0.0	0.16	11.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Miro	PF08477.8	gi|385803664|ref|YP_005840064.1|	-	0.072	13.5	0.0	0.23	11.9	0.0	1.9	1	0	0	1	1	1	0	Miro-like	protein
AAA_14	PF13173.1	gi|385803664|ref|YP_005840064.1|	-	0.11	12.4	0.0	0.24	11.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
B12-binding	PF02310.14	gi|385803665|ref|YP_005840065.1|	-	2.2e-19	69.4	0.8	2.6e-19	69.2	0.6	1.1	1	0	0	1	1	1	1	B12	binding	domain
Staph_haemo	PF05480.6	gi|385803665|ref|YP_005840065.1|	-	0.056	13.1	0.0	0.14	11.8	0.0	1.7	1	0	0	1	1	1	0	Staphylococcus	haemolytic	protein
Amidohydro_4	PF13147.1	gi|385803665|ref|YP_005840065.1|	-	0.063	13.2	0.4	0.07	13.1	0.3	1.1	1	0	0	1	1	1	0	Amidohydrolase
BcrAD_BadFG	PF01869.15	gi|385803665|ref|YP_005840065.1|	-	0.096	11.9	0.0	0.22	10.7	0.0	1.5	1	1	0	1	1	1	0	BadF/BadG/BcrA/BcrD	ATPase	family
Peripla_BP_6	PF13458.1	gi|385803665|ref|YP_005840065.1|	-	0.1	11.9	0.0	0.18	11.1	0.0	1.4	1	1	0	1	1	1	0	Periplasmic	binding	protein
3HCDH_N	PF02737.13	gi|385803666|ref|YP_005840066.1|	-	8.2e-58	195.0	0.2	1e-57	194.7	0.2	1.1	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.17	gi|385803666|ref|YP_005840066.1|	-	1.6e-32	111.7	0.1	5.9e-32	109.9	0.0	2.0	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_binding_2	PF03446.10	gi|385803666|ref|YP_005840066.1|	-	0.0003	20.6	1.8	0.00074	19.3	1.3	1.8	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.12	gi|385803666|ref|YP_005840066.1|	-	0.0027	18.0	0.7	0.0073	16.7	0.5	1.8	1	1	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_Gly3P_dh_N	PF01210.18	gi|385803666|ref|YP_005840066.1|	-	0.0087	15.8	0.0	0.012	15.2	0.0	1.3	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
2-Hacid_dh_C	PF02826.14	gi|385803666|ref|YP_005840066.1|	-	0.022	13.9	0.1	0.044	12.9	0.1	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.9	gi|385803666|ref|YP_005840066.1|	-	0.034	13.5	0.8	0.051	12.9	0.6	1.4	1	1	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
adh_short_C2	PF13561.1	gi|385803666|ref|YP_005840066.1|	-	0.076	12.7	0.2	0.12	12.1	0.1	1.2	1	0	0	1	1	1	0	Enoyl-(Acyl	carrier	protein)	reductase
ApbA	PF02558.11	gi|385803666|ref|YP_005840066.1|	-	0.098	12.0	0.0	0.14	11.6	0.0	1.2	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
DAO	PF01266.19	gi|385803666|ref|YP_005840066.1|	-	0.25	10.1	1.8	0.41	9.5	1.2	1.3	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
ABC_tran	PF00005.22	gi|385803667|ref|YP_005840067.1|	-	6.2e-30	104.2	0.0	9e-30	103.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385803667|ref|YP_005840067.1|	-	3.5e-15	56.7	0.0	1.4e-10	41.6	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|385803667|ref|YP_005840067.1|	-	3.9e-08	32.8	0.0	1.8e-07	30.6	0.0	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|385803667|ref|YP_005840067.1|	-	4.8e-06	25.9	0.0	9.4e-06	25.0	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.1	gi|385803667|ref|YP_005840067.1|	-	3.8e-05	22.9	0.0	0.12	11.4	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.1	gi|385803667|ref|YP_005840067.1|	-	0.00013	22.3	0.0	0.00017	22.0	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_13	PF13166.1	gi|385803667|ref|YP_005840067.1|	-	0.00027	19.5	0.0	0.017	13.6	0.0	2.2	2	1	0	2	2	2	1	AAA	domain
AAA_28	PF13521.1	gi|385803667|ref|YP_005840067.1|	-	0.0016	18.4	0.1	0.0038	17.1	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|385803667|ref|YP_005840067.1|	-	0.0022	17.6	0.1	0.34	10.6	0.0	2.7	2	0	0	2	2	2	1	Part	of	AAA	domain
MukB	PF04310.7	gi|385803667|ref|YP_005840067.1|	-	0.0029	16.9	0.0	0.0042	16.4	0.0	1.2	1	0	0	1	1	1	1	MukB	N-terminal
DUF258	PF03193.11	gi|385803667|ref|YP_005840067.1|	-	0.0034	16.6	0.0	0.0053	15.9	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_16	PF13191.1	gi|385803667|ref|YP_005840067.1|	-	0.0043	17.0	0.7	0.016	15.1	0.5	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
ABC_ATPase	PF09818.4	gi|385803667|ref|YP_005840067.1|	-	0.011	14.2	0.1	0.23	9.9	0.0	2.0	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
AAA_17	PF13207.1	gi|385803667|ref|YP_005840067.1|	-	0.012	16.4	0.2	0.031	15.0	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.7	gi|385803667|ref|YP_005840067.1|	-	0.017	14.2	0.1	0.16	11.0	0.0	2.3	3	0	0	3	3	3	0	Zeta	toxin
AAA_30	PF13604.1	gi|385803667|ref|YP_005840067.1|	-	0.019	14.5	0.0	0.03	13.9	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.1	gi|385803667|ref|YP_005840067.1|	-	0.03	13.7	0.4	0.084	12.2	0.3	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|385803667|ref|YP_005840067.1|	-	0.059	13.2	0.2	0.17	11.7	0.1	1.7	2	1	0	2	2	1	0	AAA	domain
NACHT	PF05729.7	gi|385803667|ref|YP_005840067.1|	-	0.06	12.9	0.0	0.11	12.1	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
MobB	PF03205.9	gi|385803667|ref|YP_005840067.1|	-	0.069	12.8	0.1	0.2	11.3	0.0	1.8	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
SbcCD_C	PF13558.1	gi|385803667|ref|YP_005840067.1|	-	0.1	12.5	0.0	0.59	10.0	0.0	2.1	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
Miro	PF08477.8	gi|385803667|ref|YP_005840067.1|	-	0.11	13.0	0.0	0.18	12.3	0.0	1.4	1	0	0	1	1	1	0	Miro-like	protein
AAA_5	PF07728.9	gi|385803667|ref|YP_005840067.1|	-	0.11	12.1	0.0	0.61	9.8	0.0	2.0	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
NTPase_1	PF03266.10	gi|385803667|ref|YP_005840067.1|	-	0.11	12.1	0.0	0.43	10.2	0.0	1.8	2	0	0	2	2	2	0	NTPase
cobW	PF02492.14	gi|385803667|ref|YP_005840067.1|	-	0.12	11.8	0.1	0.24	10.8	0.1	1.6	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
HAD	PF12710.2	gi|385803667|ref|YP_005840067.1|	-	0.14	12.3	0.0	0.19	11.8	0.0	1.2	1	0	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
CbiQ	PF02361.11	gi|385803668|ref|YP_005840068.1|	-	1.9e-25	89.7	4.5	2.7e-25	89.2	3.1	1.1	1	0	0	1	1	1	1	Cobalt	transport	protein
CcoS	PF03597.10	gi|385803669|ref|YP_005840069.1|	-	8.8	5.8	6.1	2	7.9	0.0	2.6	3	0	0	3	3	3	0	Cytochrome	oxidase	maturation	protein	cbb3-type
CbiM	PF01891.11	gi|385803670|ref|YP_005840070.1|	-	1.1e-32	113.3	22.8	1.2e-32	113.1	15.8	1.0	1	0	0	1	1	1	1	Cobalt	uptake	substrate-specific	transmembrane	region
DUF3816	PF12822.2	gi|385803670|ref|YP_005840070.1|	-	0.00067	19.5	19.1	0.00067	19.5	13.3	2.1	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF3816)
DUF1370	PF07114.6	gi|385803670|ref|YP_005840070.1|	-	2.6	7.2	7.1	0.68	9.1	0.4	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1370)
Thiolase_N	PF00108.18	gi|385803671|ref|YP_005840071.1|	-	6.4e-13	48.2	0.3	7.1e-11	41.5	0.0	2.2	2	0	0	2	2	2	2	Thiolase,	N-terminal	domain
ketoacyl-synt	PF00109.21	gi|385803671|ref|YP_005840071.1|	-	1e-10	41.5	6.7	8.6e-10	38.5	1.8	3.3	3	1	0	3	3	3	1	Beta-ketoacyl	synthase,	N-terminal	domain
Thiolase_C	PF02803.13	gi|385803671|ref|YP_005840071.1|	-	4.8e-10	38.9	0.1	2.7e-09	36.4	0.1	2.2	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
Ketoacyl-synt_C	PF02801.17	gi|385803671|ref|YP_005840071.1|	-	0.00054	19.7	0.3	1.3	8.8	0.0	3.4	3	0	0	3	3	3	2	Beta-ketoacyl	synthase,	C-terminal	domain
ACP_syn_III	PF08545.5	gi|385803671|ref|YP_005840071.1|	-	0.016	14.8	1.2	0.78	9.4	0.2	2.4	2	0	0	2	2	2	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
DUF35	PF01796.12	gi|385803672|ref|YP_005840072.1|	-	1.1e-08	35.1	1.4	1.5e-08	34.7	0.9	1.3	1	0	0	1	1	1	1	DUF35	OB-fold	domain
DUF35_N	PF12172.3	gi|385803672|ref|YP_005840072.1|	-	0.00024	20.9	1.2	0.00038	20.2	0.3	1.7	2	0	0	2	2	2	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Zn_Tnp_IS1595	PF12760.2	gi|385803672|ref|YP_005840072.1|	-	0.03	14.1	0.1	0.049	13.4	0.1	1.3	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Nudix_N_2	PF14803.1	gi|385803672|ref|YP_005840072.1|	-	0.073	12.7	0.5	0.13	11.9	0.3	1.5	1	0	0	1	1	1	0	Nudix	N-terminal
TF_Zn_Ribbon	PF08271.7	gi|385803672|ref|YP_005840072.1|	-	0.078	12.3	0.1	0.16	11.3	0.1	1.6	1	0	0	1	1	1	0	TFIIB	zinc-binding
zf-ribbon_3	PF13248.1	gi|385803672|ref|YP_005840072.1|	-	0.14	11.3	0.4	0.26	10.5	0.2	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
adh_short	PF00106.20	gi|385803673|ref|YP_005840073.1|	-	2.6e-43	147.8	0.3	3.2e-43	147.5	0.2	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|385803673|ref|YP_005840073.1|	-	1e-22	80.6	0.2	1.4e-22	80.2	0.1	1.1	1	0	0	1	1	1	1	KR	domain
adh_short_C2	PF13561.1	gi|385803673|ref|YP_005840073.1|	-	1.4e-18	67.5	0.6	1.7e-18	67.3	0.4	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
Epimerase	PF01370.16	gi|385803673|ref|YP_005840073.1|	-	3.2e-05	23.5	0.3	5.2e-05	22.7	0.2	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
THF_DHG_CYH_C	PF02882.14	gi|385803673|ref|YP_005840073.1|	-	0.0061	15.6	0.4	0.18	10.8	0.0	2.2	1	1	1	2	2	2	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
3Beta_HSD	PF01073.14	gi|385803673|ref|YP_005840073.1|	-	0.0088	14.7	0.6	0.012	14.2	0.4	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_10	PF13460.1	gi|385803673|ref|YP_005840073.1|	-	0.016	15.2	1.2	0.022	14.7	0.9	1.4	1	1	0	1	1	1	0	NADH(P)-binding
NmrA	PF05368.8	gi|385803673|ref|YP_005840073.1|	-	0.072	12.3	1.7	0.071	12.3	0.4	1.6	2	1	0	2	2	2	0	NmrA-like	family
Abhydrolase_1	PF00561.15	gi|385803674|ref|YP_005840074.1|	-	4.2e-19	69.0	0.0	6.8e-19	68.3	0.0	1.3	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.2	gi|385803674|ref|YP_005840074.1|	-	2.3e-11	44.0	0.0	5.2e-11	42.8	0.0	1.5	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
PhaC_N	PF07167.8	gi|385803674|ref|YP_005840074.1|	-	1.2e-09	37.8	0.0	2e-09	37.0	0.0	1.3	1	0	0	1	1	1	1	Poly-beta-hydroxybutyrate	polymerase	(PhaC)	N-terminus
Abhydrolase_5	PF12695.2	gi|385803674|ref|YP_005840074.1|	-	2.4e-09	37.0	0.0	2e-08	34.1	0.0	2.2	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
HHH_5	PF14520.1	gi|385803674|ref|YP_005840074.1|	-	1e-06	28.7	0.2	4.7e-06	26.6	0.1	2.0	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
DLH	PF01738.13	gi|385803674|ref|YP_005840074.1|	-	6.2e-05	22.3	0.0	0.0018	17.5	0.0	2.5	3	0	0	3	3	3	1	Dienelactone	hydrolase	family
DUF3141	PF11339.3	gi|385803674|ref|YP_005840074.1|	-	8.3e-05	21.1	0.0	0.00032	19.1	0.0	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3141)
DUF4332	PF14229.1	gi|385803674|ref|YP_005840074.1|	-	0.00018	21.4	0.0	0.00047	20.1	0.0	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4332)
PHB_depo_C	PF06850.6	gi|385803674|ref|YP_005840074.1|	-	0.0015	17.7	0.0	0.0033	16.6	0.0	1.6	1	0	0	1	1	1	1	PHB	de-polymerase	C-terminus
Cdd1	PF11731.3	gi|385803674|ref|YP_005840074.1|	-	0.0071	16.2	0.0	0.016	15.1	0.0	1.5	1	0	0	1	1	1	1	Pathogenicity	locus
DNA_pol_lambd_f	PF10391.4	gi|385803674|ref|YP_005840074.1|	-	0.0072	15.8	0.0	0.015	14.8	0.0	1.5	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
TfoX_C	PF04994.8	gi|385803674|ref|YP_005840074.1|	-	0.017	15.0	0.0	0.033	14.0	0.0	1.5	1	0	0	1	1	1	0	TfoX	C-terminal	domain
DUF2048	PF09752.4	gi|385803674|ref|YP_005840074.1|	-	0.028	13.2	0.2	1.9	7.2	0.1	2.1	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2048)
FSH1	PF03959.8	gi|385803674|ref|YP_005840074.1|	-	0.049	13.0	0.0	0.22	10.9	0.0	1.9	2	0	0	2	2	2	0	Serine	hydrolase	(FSH1)
PHA_synth_III_E	PF09712.5	gi|385803675|ref|YP_005840075.1|	-	8.2e-10	38.5	1.4	8.2e-10	38.5	1.0	2.3	1	1	2	3	3	3	2	Poly(R)-hydroxyalkanoic	acid	synthase	subunit	(PHA_synth_III_E)
Phasin	PF05597.6	gi|385803675|ref|YP_005840075.1|	-	0.093	12.4	1.9	0.91	9.2	0.0	2.5	2	1	0	2	2	2	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
KCNQ_channel	PF03520.9	gi|385803675|ref|YP_005840075.1|	-	0.11	11.8	0.5	0.22	10.8	0.2	1.7	2	1	0	2	2	2	0	KCNQ	voltage-gated	potassium	channel
IMD	PF08397.6	gi|385803675|ref|YP_005840075.1|	-	0.11	11.7	1.9	0.43	9.8	0.1	2.3	2	1	0	2	2	2	0	IRSp53/MIM	homology	domain
FliD_C	PF07195.7	gi|385803675|ref|YP_005840075.1|	-	0.13	11.5	2.9	0.43	9.8	2.0	1.8	1	1	0	1	1	1	0	Flagellar	hook-associated	protein	2	C-terminus
Phasin_2	PF09361.5	gi|385803675|ref|YP_005840075.1|	-	0.27	11.3	7.0	42	4.2	0.0	3.2	2	1	0	2	2	2	0	Phasin	protein
DUF4226	PF10774.4	gi|385803676|ref|YP_005840076.1|	-	0.0076	16.2	2.5	0.03	14.3	0.1	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4226)
Phasin_2	PF09361.5	gi|385803676|ref|YP_005840076.1|	-	0.024	14.6	6.1	0.26	11.3	0.1	3.0	1	1	2	3	3	3	0	Phasin	protein
DUF2580	PF10824.3	gi|385803676|ref|YP_005840076.1|	-	0.041	14.2	3.8	3.3	8.0	0.1	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2580)
Helicase_IV_N	PF12462.3	gi|385803676|ref|YP_005840076.1|	-	0.046	13.3	0.3	0.11	12.1	0.0	1.7	2	0	0	2	2	2	0	DNA	helicase	IV	/	RNA	helicase	N	terminal
Tape_meas_lam_C	PF09718.5	gi|385803676|ref|YP_005840076.1|	-	0.054	13.4	4.5	5.9	6.8	0.0	2.9	1	1	2	3	3	3	0	Lambda	phage	tail	tape-measure	protein	(Tape_meas_lam_C)
PMEI	PF04043.10	gi|385803676|ref|YP_005840076.1|	-	0.09	12.6	0.8	0.16	11.9	0.5	1.6	1	1	0	1	1	1	0	Plant	invertase/pectin	methylesterase	inhibitor
KfrA_N	PF11740.3	gi|385803676|ref|YP_005840076.1|	-	0.24	11.8	6.4	0.15	12.4	0.6	2.1	1	1	1	2	2	2	0	Plasmid	replication	region	DNA-binding	N-term
YtxH	PF12732.2	gi|385803676|ref|YP_005840076.1|	-	0.34	11.3	3.7	0.54	10.6	0.7	2.4	2	1	0	2	2	2	0	YtxH-like	protein
DUF2508	PF10704.4	gi|385803676|ref|YP_005840076.1|	-	0.59	10.3	2.4	4.4	7.5	0.2	2.4	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2508)
WXG100	PF06013.7	gi|385803676|ref|YP_005840076.1|	-	1.4	8.9	6.5	0.54	10.2	0.9	2.4	2	1	0	2	2	2	0	Proteins	of	100	residues	with	WXG
RepB-RCR_reg	PF10723.4	gi|385803677|ref|YP_005840077.1|	-	0.05	13.3	0.0	0.077	12.7	0.0	1.2	1	0	0	1	1	1	0	Replication	regulatory	protein	RepB
Antitoxin-MazE	PF04014.13	gi|385803677|ref|YP_005840077.1|	-	0.096	12.4	0.5	0.2	11.4	0.3	1.5	1	0	0	1	1	1	0	Antidote-toxin	recognition	MazE
MaoC_dehydratas	PF01575.14	gi|385803678|ref|YP_005840078.1|	-	9.7e-22	76.6	0.1	1.6e-21	75.9	0.1	1.3	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.1	gi|385803678|ref|YP_005840078.1|	-	7.8e-07	28.9	0.4	2.1e-06	27.5	0.0	1.9	2	1	0	2	2	2	1	N-terminal	half	of	MaoC	dehydratase
4HBT	PF03061.17	gi|385803678|ref|YP_005840078.1|	-	0.053	13.6	0.0	0.11	12.6	0.0	1.5	1	0	0	1	1	1	0	Thioesterase	superfamily
4HBT_2	PF13279.1	gi|385803678|ref|YP_005840078.1|	-	0.07	13.5	0.0	0.3	11.5	0.0	1.7	1	1	1	2	2	2	0	Thioesterase-like	superfamily
AP_endonuc_2	PF01261.19	gi|385803679|ref|YP_005840079.1|	-	2.1e-17	63.1	0.1	3e-17	62.6	0.1	1.2	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
tRNA-synt_1	PF00133.17	gi|385803680|ref|YP_005840080.1|	-	6.7e-71	239.0	7.0	3.6e-27	94.6	0.0	4.9	1	1	3	4	4	4	4	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1_2	PF13603.1	gi|385803680|ref|YP_005840080.1|	-	2.4e-54	183.4	0.0	4.1e-54	182.6	0.0	1.4	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1g	PF09334.6	gi|385803680|ref|YP_005840080.1|	-	4.2e-41	140.8	0.3	9.6e-26	90.3	0.1	4.1	3	1	0	3	3	3	2	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.8	gi|385803680|ref|YP_005840080.1|	-	2.9e-15	56.3	0.0	5.8e-15	55.3	0.0	1.5	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1e	PF01406.14	gi|385803680|ref|YP_005840080.1|	-	4.8e-09	35.7	0.3	1.3e-05	24.5	0.0	3.0	3	0	0	3	3	3	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.13	gi|385803680|ref|YP_005840080.1|	-	2.8e-05	22.9	0.0	0.0077	14.9	0.0	2.7	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(K)
DZR	PF12773.2	gi|385803680|ref|YP_005840080.1|	-	0.00014	21.6	2.7	0.3	10.9	0.2	2.5	2	0	0	2	2	2	2	Double	zinc	ribbon
tRNA-synt_1d	PF00750.14	gi|385803680|ref|YP_005840080.1|	-	0.0058	15.5	0.0	1.3	7.7	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(R)
DNA_ligase_ZBD	PF03119.11	gi|385803680|ref|YP_005840080.1|	-	0.014	15.0	4.2	0.31	10.7	0.0	3.1	3	0	0	3	3	3	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
tRNA-synt_1b	PF00579.20	gi|385803680|ref|YP_005840080.1|	-	0.033	13.3	0.1	0.11	11.5	0.0	1.8	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(W	and	Y)
DUF2570	PF10828.3	gi|385803680|ref|YP_005840080.1|	-	0.1	12.1	0.0	1.4	8.5	0.0	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2570)
Nudix_N_2	PF14803.1	gi|385803680|ref|YP_005840080.1|	-	0.76	9.5	3.1	29	4.4	0.1	3.7	3	0	0	3	3	3	0	Nudix	N-terminal
TF_Zn_Ribbon	PF08271.7	gi|385803680|ref|YP_005840080.1|	-	1.2	8.4	9.5	20	4.6	0.1	3.6	3	0	0	3	3	3	0	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.5	gi|385803680|ref|YP_005840080.1|	-	1.5	8.8	3.6	2.9	7.9	0.1	2.9	3	0	0	3	3	3	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.1	gi|385803680|ref|YP_005840080.1|	-	2.5	7.4	7.5	6.8	6.0	0.6	3.1	2	1	1	3	3	3	0	zinc-ribbon	domain
QueC	PF06508.8	gi|385803681|ref|YP_005840081.1|	-	0.15	11.3	0.0	0.25	10.5	0.0	1.3	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
PMSR	PF01625.16	gi|385803683|ref|YP_005840083.1|	-	6.6e-39	133.2	0.0	8.8e-39	132.8	0.0	1.1	1	0	0	1	1	1	1	Peptide	methionine	sulfoxide	reductase
FAD_binding_4	PF01565.18	gi|385803684|ref|YP_005840084.1|	-	8.9e-32	109.4	2.7	1.6e-31	108.6	1.9	1.4	1	0	0	1	1	1	1	FAD	binding	domain
BBE	PF08031.7	gi|385803684|ref|YP_005840084.1|	-	2.4e-09	36.9	0.0	4.9e-09	35.9	0.0	1.6	1	0	0	1	1	1	1	Berberine	and	berberine	like
Cytokin-bind	PF09265.5	gi|385803684|ref|YP_005840084.1|	-	0.026	13.6	0.3	0.071	12.2	0.2	1.7	1	1	0	1	1	1	0	Cytokinin	dehydrogenase	1,	FAD	and	cytokinin	binding
Lactamase_B_2	PF12706.2	gi|385803685|ref|YP_005840085.1|	-	1.6e-05	24.5	4.0	0.0025	17.3	1.0	3.2	2	1	0	2	2	2	2	Beta-lactamase	superfamily	domain
RMMBL	PF07521.7	gi|385803685|ref|YP_005840085.1|	-	0.00014	21.6	0.0	0.00033	20.3	0.0	1.6	1	0	0	1	1	1	1	RNA-metabolising	metallo-beta-lactamase
DNA_ligase_A_N	PF04675.9	gi|385803686|ref|YP_005840086.1|	-	3.3e-42	144.2	0.0	8.6e-42	142.9	0.0	1.7	1	1	1	2	2	2	1	DNA	ligase	N	terminus
DNA_ligase_A_M	PF01068.16	gi|385803686|ref|YP_005840086.1|	-	9.5e-41	139.3	0.0	3.9e-40	137.3	0.0	1.9	1	1	0	1	1	1	1	ATP	dependent	DNA	ligase	domain
DNA_ligase_A_C	PF04679.10	gi|385803686|ref|YP_005840086.1|	-	2.4e-13	50.3	0.0	2.1e-12	47.2	0.0	2.5	2	0	0	2	2	2	1	ATP	dependent	DNA	ligase	C	terminal	region
mRNA_cap_enzyme	PF01331.14	gi|385803686|ref|YP_005840086.1|	-	0.048	13.3	0.0	0.13	11.9	0.0	1.7	2	0	0	2	2	2	0	mRNA	capping	enzyme,	catalytic	domain
Rhomboid	PF01694.17	gi|385803688|ref|YP_005840088.1|	-	2.2e-21	76.4	13.4	3.1e-21	75.9	9.3	1.2	1	0	0	1	1	1	1	Rhomboid	family
DUF1751	PF08551.5	gi|385803688|ref|YP_005840088.1|	-	2.5e-05	24.5	0.4	2.5e-05	24.5	0.3	1.9	2	0	0	2	2	2	1	Eukaryotic	integral	membrane	protein	(DUF1751)
DUF3040	PF11239.3	gi|385803689|ref|YP_005840089.1|	-	0.0066	16.4	0.0	0.0095	15.9	0.0	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3040)
Methyltransf_11	PF08241.7	gi|385803691|ref|YP_005840091.1|	-	7.2e-12	45.6	0.0	1.3e-11	44.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|385803691|ref|YP_005840091.1|	-	1.9e-11	43.7	0.0	2.2e-11	43.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.14	gi|385803691|ref|YP_005840091.1|	-	3.8e-11	42.9	0.0	5.6e-11	42.3	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_12	PF08242.7	gi|385803691|ref|YP_005840091.1|	-	6.9e-09	36.0	0.0	1.5e-08	34.9	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|385803691|ref|YP_005840091.1|	-	6.8e-08	33.0	0.0	1.5e-07	31.9	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|385803691|ref|YP_005840091.1|	-	1.6e-07	31.5	0.0	2.9e-07	30.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|385803691|ref|YP_005840091.1|	-	1.1e-06	28.4	0.0	1.9e-06	27.6	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|385803691|ref|YP_005840091.1|	-	8.2e-06	25.8	0.7	2.1e-05	24.4	0.1	1.7	1	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_4	PF02390.12	gi|385803691|ref|YP_005840091.1|	-	2.7e-05	23.3	0.0	4.2e-05	22.6	0.0	1.3	1	0	0	1	1	1	1	Putative	methyltransferase
Ubie_methyltran	PF01209.13	gi|385803691|ref|YP_005840091.1|	-	0.00018	20.7	0.0	0.00028	20.0	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
CMAS	PF02353.15	gi|385803691|ref|YP_005840091.1|	-	0.00087	18.4	0.0	0.0012	18.0	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
FtsJ	PF01728.14	gi|385803691|ref|YP_005840091.1|	-	0.0057	16.6	0.0	0.0065	16.4	0.0	1.3	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
MTS	PF05175.9	gi|385803691|ref|YP_005840091.1|	-	0.0059	15.9	0.0	0.011	15.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
GCD14	PF08704.5	gi|385803691|ref|YP_005840091.1|	-	0.016	14.6	0.0	0.025	14.0	0.0	1.3	1	0	0	1	1	1	0	tRNA	methyltransferase	complex	GCD14	subunit
Fibrillarin	PF01269.12	gi|385803691|ref|YP_005840091.1|	-	0.06	12.2	0.0	0.083	11.7	0.0	1.2	1	0	0	1	1	1	0	Fibrillarin
Methyltransf_32	PF13679.1	gi|385803691|ref|YP_005840091.1|	-	0.085	12.5	0.0	0.16	11.6	0.0	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
Na_Ca_ex	PF01699.19	gi|385803693|ref|YP_005840093.1|	-	9.8e-38	128.9	32.5	2.6e-20	72.4	8.4	2.3	2	1	0	2	2	2	2	Sodium/calcium	exchanger	protein
2TM	PF13239.1	gi|385803693|ref|YP_005840093.1|	-	0.13	12.3	0.1	0.13	12.3	0.1	2.5	3	0	0	3	3	3	0	2TM	domain
NAD_binding_10	PF13460.1	gi|385803694|ref|YP_005840094.1|	-	2.6e-23	82.9	0.1	4.3e-23	82.2	0.0	1.3	1	0	0	1	1	1	1	NADH(P)-binding
NmrA	PF05368.8	gi|385803694|ref|YP_005840094.1|	-	1.6e-11	43.9	0.0	2e-11	43.5	0.0	1.2	1	0	0	1	1	1	1	NmrA-like	family
Epimerase	PF01370.16	gi|385803694|ref|YP_005840094.1|	-	5.3e-10	39.1	0.0	7.3e-09	35.4	0.0	2.3	2	1	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.12	gi|385803694|ref|YP_005840094.1|	-	3.4e-07	29.4	0.0	6.9e-05	21.8	0.0	2.1	2	0	0	2	2	2	2	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.14	gi|385803694|ref|YP_005840094.1|	-	1.9e-05	23.5	0.0	3.4e-05	22.7	0.0	1.4	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_4	PF07993.7	gi|385803694|ref|YP_005840094.1|	-	0.0014	17.6	0.3	0.014	14.2	0.0	2.4	3	0	0	3	3	3	1	Male	sterility	protein
DapB_N	PF01113.15	gi|385803694|ref|YP_005840094.1|	-	0.0022	17.9	0.0	0.0042	16.9	0.0	1.5	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Semialdhyde_dh	PF01118.19	gi|385803694|ref|YP_005840094.1|	-	0.0031	17.7	0.0	0.0084	16.4	0.0	1.7	2	0	0	2	2	2	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
adh_short	PF00106.20	gi|385803694|ref|YP_005840094.1|	-	0.014	15.3	0.0	0.034	14.0	0.0	1.7	1	1	0	1	1	1	0	short	chain	dehydrogenase
Glyco_trans_4_4	PF13579.1	gi|385803694|ref|YP_005840094.1|	-	2.5	8.2	6.0	3.7	7.6	0.0	2.9	1	1	1	3	3	3	0	Glycosyl	transferase	4-like	domain
Fer2	PF00111.22	gi|385803695|ref|YP_005840095.1|	-	1.3e-07	31.2	2.9	1.9e-06	27.4	2.0	2.4	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
zf-C3HC4	PF00097.20	gi|385803695|ref|YP_005840095.1|	-	0.3	10.7	1.5	2.6	7.8	0.3	2.3	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
Fer2_3	PF13085.1	gi|385803695|ref|YP_005840095.1|	-	0.67	9.7	2.9	2.4	8.0	2.0	2.1	1	1	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
A2L_zn_ribbon	PF08792.5	gi|385803696|ref|YP_005840096.1|	-	0.01	15.2	0.5	0.016	14.6	0.3	1.3	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
DUF2318	PF10080.4	gi|385803696|ref|YP_005840096.1|	-	0.024	14.3	0.2	0.027	14.2	0.2	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
Prok-RING_1	PF14446.1	gi|385803696|ref|YP_005840096.1|	-	0.034	13.8	1.1	0.047	13.4	0.8	1.3	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
RNA_POL_M_15KD	PF02150.11	gi|385803696|ref|YP_005840096.1|	-	0.045	13.4	1.8	2.8	7.7	0.1	2.2	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
GCC2_GCC3	PF07699.8	gi|385803696|ref|YP_005840096.1|	-	0.23	11.0	1.9	0.32	10.6	1.3	1.2	1	0	0	1	1	1	0	GCC2	and	GCC3
Tnp_DNA_bind	PF14706.1	gi|385803697|ref|YP_005840097.1|	-	2.7e-26	91.0	0.0	4.6e-26	90.2	0.0	1.4	1	0	0	1	1	1	1	Transposase	DNA-binding
DDE_Tnp_1	PF01609.16	gi|385803697|ref|YP_005840097.1|	-	4.3e-05	23.1	0.2	7.8e-05	22.3	0.1	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
Dimer_Tnp_Tn5	PF02281.11	gi|385803697|ref|YP_005840097.1|	-	0.058	13.5	0.1	0.15	12.1	0.0	1.7	2	0	0	2	2	2	0	Transposase	Tn5	dimerisation	domain
DUF2155	PF09923.4	gi|385803697|ref|YP_005840097.1|	-	0.13	12.3	0.0	0.26	11.4	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2155)
FUN14	PF04930.10	gi|385803698|ref|YP_005840098.1|	-	8.5e-20	70.8	2.2	1e-19	70.6	1.5	1.0	1	0	0	1	1	1	1	FUN14	family
DUF4646	PF15496.1	gi|385803698|ref|YP_005840098.1|	-	0.084	12.9	0.0	0.1	12.6	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4646)
ATPase_gene1	PF09527.5	gi|385803698|ref|YP_005840098.1|	-	0.58	10.0	9.0	0.36	10.6	2.4	2.6	2	1	0	2	2	2	0	Putative	F0F1-ATPase	subunit	(ATPase_gene1)
MMR_HSR1	PF01926.18	gi|385803699|ref|YP_005840099.1|	-	1.8e-18	66.5	0.0	5.5e-18	65.0	0.0	1.9	2	0	0	2	2	1	1	50S	ribosome-binding	GTPase
GTP_EFTU	PF00009.22	gi|385803699|ref|YP_005840099.1|	-	2.8e-11	43.2	0.0	7.3e-11	41.8	0.0	1.7	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP-bdg_N	PF13167.1	gi|385803699|ref|YP_005840099.1|	-	4.2e-11	42.8	0.0	1.2e-10	41.3	0.0	1.8	1	0	0	1	1	1	1	GTP-binding	GTPase	N-terminal
cobW	PF02492.14	gi|385803699|ref|YP_005840099.1|	-	3.2e-06	26.7	0.2	0.0005	19.5	0.0	2.6	1	1	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
FeoB_N	PF02421.13	gi|385803699|ref|YP_005840099.1|	-	0.00021	20.5	0.0	0.25	10.5	0.0	3.0	3	0	0	3	3	3	2	Ferrous	iron	transport	protein	B
AAA_18	PF13238.1	gi|385803699|ref|YP_005840099.1|	-	0.00081	19.7	0.0	0.0091	16.2	0.0	2.7	2	0	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|385803699|ref|YP_005840099.1|	-	0.0037	18.0	2.0	0.038	14.8	0.0	3.0	2	2	1	3	3	3	1	AAA	domain
Miro	PF08477.8	gi|385803699|ref|YP_005840099.1|	-	0.0039	17.6	0.0	0.018	15.5	0.0	2.1	1	1	0	1	1	1	1	Miro-like	protein
AAA_22	PF13401.1	gi|385803699|ref|YP_005840099.1|	-	0.0062	16.6	0.1	0.035	14.2	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
MobB	PF03205.9	gi|385803699|ref|YP_005840099.1|	-	0.023	14.3	0.0	0.07	12.8	0.0	1.9	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Nif11	PF07862.6	gi|385803699|ref|YP_005840099.1|	-	0.027	14.4	0.5	0.089	12.7	0.0	2.2	2	0	0	2	2	2	0	Nitrogen	fixation	protein	of	unknown	function
Arf	PF00025.16	gi|385803699|ref|YP_005840099.1|	-	0.051	12.8	0.1	3.9	6.6	0.0	2.5	2	0	0	2	2	2	0	ADP-ribosylation	factor	family
AAA_14	PF13173.1	gi|385803699|ref|YP_005840099.1|	-	0.068	13.0	0.0	0.35	10.7	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
Dynamin_N	PF00350.18	gi|385803699|ref|YP_005840099.1|	-	0.26	11.1	6.3	2.6	7.8	0.0	3.3	3	1	1	4	4	4	0	Dynamin	family
Neur_chan_memb	PF02932.11	gi|385803699|ref|YP_005840099.1|	-	4	7.2	5.6	16	5.2	4.3	1.6	2	0	0	2	2	2	0	Neurotransmitter-gated	ion-channel	transmembrane	region
MoaC	PF01967.16	gi|385803700|ref|YP_005840100.1|	-	2.2e-43	147.1	2.2	2.7e-43	146.9	1.5	1.1	1	0	0	1	1	1	1	MoaC	family
Carb_kinase	PF01256.12	gi|385803701|ref|YP_005840101.1|	-	5.3e-49	166.7	1.9	9.6e-49	165.8	1.3	1.4	1	0	0	1	1	1	1	Carbohydrate	kinase
YjeF_N	PF03853.10	gi|385803701|ref|YP_005840101.1|	-	1.7e-42	144.8	0.1	3.7e-42	143.7	0.1	1.6	1	0	0	1	1	1	1	YjeF-related	protein	N-terminus
HK	PF02110.10	gi|385803701|ref|YP_005840101.1|	-	0.0018	17.4	0.2	0.0031	16.7	0.1	1.3	1	0	0	1	1	1	1	Hydroxyethylthiazole	kinase	family
MFS_1	PF07690.11	gi|385803702|ref|YP_005840102.1|	-	4.1e-31	107.9	48.8	4.1e-31	107.9	33.8	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
zf-FCS	PF06467.9	gi|385803703|ref|YP_005840103.1|	-	2.5e-05	23.8	1.3	4.3e-05	23.0	0.9	1.4	1	1	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
DUF3330	PF11809.3	gi|385803703|ref|YP_005840103.1|	-	0.0052	16.6	1.8	0.0063	16.3	1.3	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3330)
DUF2116	PF09889.4	gi|385803703|ref|YP_005840103.1|	-	0.013	15.2	2.7	0.18	11.6	0.2	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
Ecl1	PF12855.2	gi|385803703|ref|YP_005840103.1|	-	0.034	13.4	0.1	0.051	12.8	0.1	1.3	1	0	0	1	1	1	0	Life-span	regulatory	factor
DZR	PF12773.2	gi|385803703|ref|YP_005840103.1|	-	0.036	13.8	0.9	0.053	13.3	0.6	1.3	1	1	0	1	1	1	0	Double	zinc	ribbon
YHS	PF04945.8	gi|385803703|ref|YP_005840103.1|	-	0.046	13.5	1.8	0.083	12.7	1.2	1.3	1	0	0	1	1	1	0	YHS	domain
DUF329	PF03884.9	gi|385803703|ref|YP_005840103.1|	-	0.1	12.1	2.6	1.8	8.2	1.5	2.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF329)
zf-C2H2_3	PF13878.1	gi|385803703|ref|YP_005840103.1|	-	0.11	12.1	2.1	5.5	6.6	0.1	2.4	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
NosL	PF05573.7	gi|385803703|ref|YP_005840103.1|	-	0.13	11.9	0.1	0.14	11.8	0.1	1.0	1	0	0	1	1	1	0	NosL
NAD_binding_1	PF00175.16	gi|385803704|ref|YP_005840104.1|	-	3.3e-16	59.8	0.0	4.8e-16	59.2	0.0	1.2	1	0	0	1	1	1	1	Oxidoreductase	NAD-binding	domain
FAD_binding_6	PF00970.19	gi|385803704|ref|YP_005840104.1|	-	7.3e-06	26.0	0.0	1.1e-05	25.4	0.0	1.2	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
HTH_20	PF12840.2	gi|385803705|ref|YP_005840105.1|	-	1.7e-08	34.1	0.0	2.6e-08	33.5	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|385803705|ref|YP_005840105.1|	-	0.00066	19.0	0.1	0.0012	18.1	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.7	gi|385803705|ref|YP_005840105.1|	-	0.0039	16.7	0.0	0.0074	15.9	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_IclR	PF09339.5	gi|385803705|ref|YP_005840105.1|	-	0.0062	16.1	0.0	0.012	15.2	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|385803705|ref|YP_005840105.1|	-	0.0087	15.7	0.0	0.015	14.9	0.0	1.5	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|385803705|ref|YP_005840105.1|	-	0.01	15.5	0.0	0.019	14.6	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
FUR	PF01475.14	gi|385803705|ref|YP_005840105.1|	-	0.074	12.9	0.0	0.095	12.6	0.0	1.3	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
MarR	PF01047.17	gi|385803705|ref|YP_005840105.1|	-	0.11	12.2	0.0	0.22	11.2	0.0	1.5	1	0	0	1	1	1	0	MarR	family
Usp	PF00582.21	gi|385803706|ref|YP_005840106.1|	-	2.7e-38	131.2	2.2	3.1e-38	131.1	1.5	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DXP_reductoisom	PF02670.11	gi|385803706|ref|YP_005840106.1|	-	0.0042	17.6	0.1	0.0057	17.1	0.0	1.2	1	0	0	1	1	1	1	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
B12-binding	PF02310.14	gi|385803706|ref|YP_005840106.1|	-	0.041	13.7	0.1	0.058	13.2	0.1	1.3	1	0	0	1	1	1	0	B12	binding	domain
Glu_synthase	PF01645.12	gi|385803706|ref|YP_005840106.1|	-	0.071	12.0	0.2	0.087	11.7	0.1	1.1	1	0	0	1	1	1	0	Conserved	region	in	glutamate	synthase
Imm1	PF14430.1	gi|385803706|ref|YP_005840106.1|	-	0.12	12.4	0.4	0.17	12.0	0.2	1.3	1	1	0	1	1	1	0	Immunity	protein	Imm1
ETF	PF01012.16	gi|385803706|ref|YP_005840106.1|	-	0.18	11.5	5.9	2.3	7.9	4.1	2.5	1	1	0	1	1	1	0	Electron	transfer	flavoprotein	domain
RIO1	PF01163.17	gi|385803707|ref|YP_005840107.1|	-	1.2e-12	47.5	0.0	2e-12	46.8	0.0	1.2	1	0	0	1	1	1	1	RIO1	family
Kdo	PF06293.9	gi|385803707|ref|YP_005840107.1|	-	1.6e-09	37.1	0.0	2.6e-09	36.4	0.0	1.3	1	0	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
APH	PF01636.18	gi|385803707|ref|YP_005840107.1|	-	7.3e-06	25.8	0.8	0.00016	21.5	0.6	2.8	1	1	0	1	1	1	1	Phosphotransferase	enzyme	family
Pkinase	PF00069.20	gi|385803707|ref|YP_005840107.1|	-	0.00037	19.7	0.0	0.00052	19.2	0.0	1.2	1	0	0	1	1	1	1	Protein	kinase	domain
WaaY	PF06176.6	gi|385803707|ref|YP_005840107.1|	-	0.022	13.9	0.0	0.031	13.5	0.0	1.2	1	0	0	1	1	1	0	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
APH_6_hur	PF04655.9	gi|385803707|ref|YP_005840107.1|	-	0.043	12.9	0.0	0.061	12.4	0.0	1.3	1	0	0	1	1	1	0	Aminoglycoside/hydroxyurea	antibiotic	resistance	kinase
Polyketide_cyc2	PF10604.4	gi|385803709|ref|YP_005840109.1|	-	3.7e-14	53.0	0.5	4.2e-14	52.8	0.4	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
COXG	PF06240.8	gi|385803709|ref|YP_005840109.1|	-	0.00048	19.7	0.0	0.0011	18.6	0.0	1.5	1	1	0	1	1	1	1	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
Polyketide_cyc	PF03364.15	gi|385803709|ref|YP_005840109.1|	-	0.015	15.2	0.1	0.02	14.8	0.1	1.2	1	0	0	1	1	1	0	Polyketide	cyclase	/	dehydrase	and	lipid	transport
FaeA	PF04703.7	gi|385803710|ref|YP_005840110.1|	-	0.0011	19.1	0.1	0.0012	18.8	0.1	1.2	1	0	0	1	1	1	1	FaeA-like	protein
HTH_AsnC-type	PF13404.1	gi|385803710|ref|YP_005840110.1|	-	0.066	12.7	0.0	0.16	11.4	0.0	1.7	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|385803710|ref|YP_005840110.1|	-	0.098	12.0	0.1	0.36	10.2	0.0	1.9	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
TrkA_N	PF02254.13	gi|385803711|ref|YP_005840111.1|	-	2.9e-41	140.1	11.2	6e-22	77.8	1.6	2.8	3	0	0	3	3	3	2	TrkA-N	domain
TrkA_C	PF02080.16	gi|385803711|ref|YP_005840111.1|	-	1.5e-27	94.9	1.8	3.6e-13	48.8	0.0	2.9	2	0	0	2	2	2	2	TrkA-C	domain
Ion_trans_2	PF07885.11	gi|385803711|ref|YP_005840111.1|	-	0.00058	19.5	5.1	0.0011	18.5	3.5	1.5	1	0	0	1	1	1	1	Ion	channel
AdoHcyase_NAD	PF00670.16	gi|385803711|ref|YP_005840111.1|	-	0.0017	18.2	0.1	0.43	10.4	0.0	2.5	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
NAD_binding_7	PF13241.1	gi|385803711|ref|YP_005840111.1|	-	0.0019	18.4	5.1	0.0084	16.3	0.1	3.6	2	1	2	5	5	5	1	Putative	NAD(P)-binding
ThiF	PF00899.16	gi|385803711|ref|YP_005840111.1|	-	0.019	14.7	0.0	0.082	12.7	0.0	2.1	1	0	0	1	1	1	0	ThiF	family
2-Hacid_dh_C	PF02826.14	gi|385803711|ref|YP_005840111.1|	-	0.022	13.9	0.0	0.042	13.0	0.0	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
EmrE	PF13536.1	gi|385803711|ref|YP_005840111.1|	-	0.034	14.3	4.6	4.6	7.4	0.1	2.3	1	1	1	2	2	2	0	Multidrug	resistance	efflux	transporter
DUF3391	PF11871.3	gi|385803711|ref|YP_005840111.1|	-	0.049	13.8	0.2	0.99	9.6	0.0	2.7	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3391)
AlaDh_PNT_C	PF01262.16	gi|385803711|ref|YP_005840111.1|	-	0.059	12.9	0.0	0.13	11.8	0.0	1.5	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Xan_ur_permease	PF00860.15	gi|385803711|ref|YP_005840111.1|	-	0.081	11.3	2.4	0.12	10.8	1.7	1.2	1	0	0	1	1	1	0	Permease	family
COX3	PF00510.13	gi|385803712|ref|YP_005840112.1|	-	6.3e-37	127.4	18.9	1.2e-36	126.5	13.1	1.3	1	0	0	1	1	1	1	Cytochrome	c	oxidase	subunit	III
DUF3464	PF11947.3	gi|385803712|ref|YP_005840112.1|	-	4.4	6.7	5.5	32	3.9	1.8	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3464)
SQS_PSY	PF00494.14	gi|385803713|ref|YP_005840113.1|	-	2.3e-44	151.6	0.8	2.8e-44	151.4	0.5	1.1	1	0	0	1	1	1	1	Squalene/phytoene	synthase
DUF1414	PF07208.6	gi|385803713|ref|YP_005840113.1|	-	0.039	13.6	0.0	0.12	12.1	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1414)
CDP-OH_P_transf	PF01066.16	gi|385803715|ref|YP_005840115.1|	-	5.7e-10	39.4	8.2	5.7e-10	39.4	5.7	2.4	3	0	0	3	3	3	1	CDP-alcohol	phosphatidyltransferase
Copper-bind	PF00127.15	gi|385803716|ref|YP_005840116.1|	-	3.5e-17	62.4	0.0	5.7e-17	61.7	0.0	1.3	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.1	gi|385803716|ref|YP_005840116.1|	-	0.00013	21.8	0.0	0.077	12.8	0.0	2.1	2	0	0	2	2	2	2	Cupredoxin-like	domain
TAT_signal	PF10518.4	gi|385803716|ref|YP_005840116.1|	-	0.032	14.2	0.4	0.067	13.2	0.3	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
SURNod19	PF07712.7	gi|385803716|ref|YP_005840116.1|	-	0.052	11.9	0.3	0.071	11.5	0.2	1.1	1	0	0	1	1	1	0	Stress	up-regulated	Nod	19
SnoaL_3	PF13474.1	gi|385803716|ref|YP_005840116.1|	-	0.06	13.3	0.3	5.5	7.0	0.1	2.2	1	1	1	2	2	2	0	SnoaL-like	domain
Ribosomal_S3Ae	PF01015.13	gi|385803717|ref|YP_005840117.1|	-	3.6e-67	225.4	0.2	4.3e-67	225.2	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	S3Ae	family
Tmemb_cc2	PF10267.4	gi|385803718|ref|YP_005840118.1|	-	0.67	8.4	8.8	0.91	8.0	6.1	1.2	1	0	0	1	1	1	0	Predicted	transmembrane	and	coiled-coil	2	protein
Ribosomal_S13_N	PF08069.7	gi|385803720|ref|YP_005840120.1|	-	1e-23	82.8	0.1	1.6e-23	82.2	0.1	1.3	1	0	0	1	1	1	1	Ribosomal	S13/S15	N-terminal	domain
Ribosomal_S15	PF00312.17	gi|385803720|ref|YP_005840120.1|	-	9.5e-22	76.5	0.5	1.4e-21	76.0	0.3	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S15
DUF3675	PF12428.3	gi|385803721|ref|YP_005840121.1|	-	0.072	13.3	0.2	0.16	12.2	0.2	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3675)
DUF4065	PF13274.1	gi|385803722|ref|YP_005840122.1|	-	2.1e-08	34.8	0.3	4e-08	33.9	0.1	1.6	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF4065)
YaeQ	PF07152.7	gi|385803722|ref|YP_005840122.1|	-	0.086	12.1	0.0	0.12	11.7	0.0	1.2	1	0	0	1	1	1	0	YaeQ	protein
Adenine_glyco	PF03352.8	gi|385803723|ref|YP_005840123.1|	-	0.00083	18.9	0.2	0.00083	18.9	0.2	1.0	1	0	0	1	1	1	1	Methyladenine	glycosylase
HTH_24	PF13412.1	gi|385803725|ref|YP_005840125.1|	-	0.00064	19.0	0.0	0.0011	18.2	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MotA_activ	PF09114.5	gi|385803725|ref|YP_005840125.1|	-	0.0023	17.6	0.1	0.0026	17.4	0.0	1.1	1	0	0	1	1	1	1	Transcription	factor	MotA,	activation	domain
HTH_12	PF08461.5	gi|385803725|ref|YP_005840125.1|	-	0.0038	16.9	0.0	0.0067	16.1	0.0	1.6	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
FerA	PF08165.6	gi|385803725|ref|YP_005840125.1|	-	0.022	14.4	0.2	7.8	6.2	0.0	2.3	2	0	0	2	2	2	0	FerA	(NUC095)	domain
HTH_5	PF01022.15	gi|385803725|ref|YP_005840125.1|	-	0.043	13.4	0.3	0.11	12.1	0.2	1.7	1	1	1	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
DUF2513	PF10711.4	gi|385803725|ref|YP_005840125.1|	-	0.087	12.9	0.0	0.18	11.9	0.0	1.5	1	1	0	1	1	1	0	Hypothetical	protein	(DUF2513)
HTH_20	PF12840.2	gi|385803725|ref|YP_005840125.1|	-	0.15	11.9	0.2	0.6	9.9	0.0	2.0	1	1	1	2	2	2	0	Helix-turn-helix	domain
DUF262	PF03235.9	gi|385803726|ref|YP_005840126.1|	-	3e-26	92.7	6.0	3e-26	92.7	4.2	2.9	3	0	0	3	3	3	1	Protein	of	unknown	function	DUF262
DUF1524	PF07510.6	gi|385803726|ref|YP_005840126.1|	-	7.2e-19	68.0	3.6	1.7e-17	63.6	1.2	2.7	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF1524)
DUF45	PF01863.12	gi|385803727|ref|YP_005840127.1|	-	2e-58	197.5	3.1	2.4e-58	197.3	1.8	1.3	1	1	1	2	2	2	1	Protein	of	unknown	function	DUF45
WLM	PF08325.5	gi|385803727|ref|YP_005840127.1|	-	4.9e-05	23.2	0.3	0.00012	22.0	0.2	1.6	1	0	0	1	1	1	1	WLM	domain
DUF4230	PF14014.1	gi|385803727|ref|YP_005840127.1|	-	0.01	15.6	1.5	0.015	15.2	0.6	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4230)
SprT-like	PF10263.4	gi|385803727|ref|YP_005840127.1|	-	0.029	14.0	0.0	0.063	12.9	0.0	1.5	1	1	0	1	1	1	0	SprT-like	family
HSDR_N	PF04313.9	gi|385803728|ref|YP_005840128.1|	-	1.2e-36	126.2	0.0	1.2e-36	126.2	0.0	3.1	4	0	0	4	4	4	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
ResIII	PF04851.10	gi|385803728|ref|YP_005840128.1|	-	5.8e-18	65.3	0.0	1.7e-17	63.8	0.0	1.8	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DUF3387	PF11867.3	gi|385803728|ref|YP_005840128.1|	-	7.3e-13	48.1	7.0	1.9e-12	46.8	4.8	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3387)
Helicase_C	PF00271.26	gi|385803728|ref|YP_005840128.1|	-	0.0064	16.3	0.0	0.039	13.8	0.0	2.3	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
AAA_22	PF13401.1	gi|385803728|ref|YP_005840128.1|	-	0.028	14.5	0.0	0.23	11.5	0.0	2.6	2	0	0	2	2	2	0	AAA	domain
Helicase_C_2	PF13307.1	gi|385803728|ref|YP_005840128.1|	-	0.033	14.1	0.2	20	5.1	0.0	3.4	2	1	0	2	2	2	0	Helicase	C-terminal	domain
AAA_10	PF12846.2	gi|385803728|ref|YP_005840128.1|	-	0.037	13.4	2.4	0.69	9.2	0.0	3.5	3	1	1	4	4	4	0	AAA-like	domain
Methylase_S	PF01420.14	gi|385803729|ref|YP_005840129.1|	-	4.6e-41	140.5	0.0	3.8e-22	79.0	0.0	2.2	2	0	0	2	2	2	2	Type	I	restriction	modification	DNA	specificity	domain
DUF2443	PF10398.4	gi|385803729|ref|YP_005840129.1|	-	0.66	9.8	5.2	5.7	6.8	0.6	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2443)
Methylase_S	PF01420.14	gi|385803730|ref|YP_005840130.1|	-	8e-32	110.5	0.9	1.3e-19	70.7	0.0	2.2	2	0	0	2	2	2	2	Type	I	restriction	modification	DNA	specificity	domain
N6_Mtase	PF02384.11	gi|385803731|ref|YP_005840131.1|	-	6.2e-79	265.2	0.0	8.7e-79	264.8	0.0	1.1	1	0	0	1	1	1	1	N-6	DNA	Methylase
HsdM_N	PF12161.3	gi|385803731|ref|YP_005840131.1|	-	7.7e-22	78.1	0.1	3.5e-21	76.0	0.1	2.2	1	0	0	1	1	1	1	HsdM	N-terminal	domain
UPF0020	PF01170.13	gi|385803731|ref|YP_005840131.1|	-	1.8e-09	37.4	0.0	3.1e-09	36.6	0.0	1.3	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_26	PF13659.1	gi|385803731|ref|YP_005840131.1|	-	2.4e-09	37.2	0.0	5.6e-09	36.0	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Phage_integrase	PF00589.17	gi|385803732|ref|YP_005840132.1|	-	1.6e-11	44.2	0.0	6.3e-09	35.7	0.0	2.9	1	1	1	2	2	2	2	Phage	integrase	family
Phage_int_SAM_1	PF02899.12	gi|385803732|ref|YP_005840132.1|	-	2.5e-05	24.3	0.2	9.3e-05	22.5	0.1	2.0	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.1	gi|385803732|ref|YP_005840132.1|	-	0.0003	21.0	0.2	0.0012	19.1	0.1	2.0	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
HTH_40	PF14493.1	gi|385803732|ref|YP_005840132.1|	-	0.081	13.1	0.2	3.1	8.0	0.2	2.8	2	1	0	2	2	2	0	Helix-turn-helix	domain
Phage_int_SAM_3	PF14659.1	gi|385803732|ref|YP_005840132.1|	-	0.1	12.9	0.0	2.5	8.4	0.0	2.8	2	0	0	2	2	2	0	Phage	integrase,	N-terminal	SAM-like	domain
Asp_decarbox	PF02261.11	gi|385803733|ref|YP_005840133.1|	-	5.6e-41	138.7	0.0	6.2e-41	138.6	0.0	1.0	1	0	0	1	1	1	1	Aspartate	decarboxylase
SHOCT	PF09851.4	gi|385803734|ref|YP_005840134.1|	-	1.6e-08	33.7	1.3	1.6e-08	33.7	0.9	1.8	2	0	0	2	2	2	1	Short	C-terminal	domain
GvpG	PF05120.7	gi|385803734|ref|YP_005840134.1|	-	0.0022	17.7	2.7	0.0023	17.7	1.0	1.6	1	1	1	2	2	2	1	Gas	vesicle	protein	G
DUF1707	PF08044.6	gi|385803734|ref|YP_005840134.1|	-	0.0024	17.5	1.2	0.005	16.5	0.8	1.6	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
DHDPS	PF00701.17	gi|385803735|ref|YP_005840135.1|	-	1.4e-62	210.9	0.0	1.6e-62	210.7	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
ADH_N	PF08240.7	gi|385803736|ref|YP_005840136.1|	-	1.1e-29	102.4	2.9	2e-29	101.5	2.0	1.5	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|385803736|ref|YP_005840136.1|	-	3.2e-20	71.9	0.2	4.7e-20	71.4	0.2	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|385803736|ref|YP_005840136.1|	-	2.7e-05	25.0	0.1	4.9e-05	24.2	0.1	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glyoxalase_2	PF12681.2	gi|385803737|ref|YP_005840137.1|	-	4.4e-13	49.7	0.0	5.4e-13	49.4	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase	PF00903.20	gi|385803737|ref|YP_005840137.1|	-	6e-12	45.6	0.0	7e-12	45.4	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.1	gi|385803737|ref|YP_005840137.1|	-	3e-09	36.8	0.0	3.8e-09	36.5	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.1	gi|385803737|ref|YP_005840137.1|	-	0.049	13.5	0.1	0.097	12.5	0.1	1.5	1	1	0	1	1	1	0	Glyoxalase-like	domain
TENA_THI-4	PF03070.11	gi|385803738|ref|YP_005840138.1|	-	4.8e-48	163.6	0.1	5.4e-48	163.5	0.1	1.0	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
SSF	PF00474.12	gi|385803739|ref|YP_005840139.1|	-	2.4e-28	98.9	29.7	3.1e-28	98.5	20.6	1.2	1	0	0	1	1	1	1	Sodium:solute	symporter	family
DUF1684	PF07920.6	gi|385803740|ref|YP_005840140.1|	-	1.4e-52	177.3	0.0	1.7e-52	177.0	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1684)
Usp	PF00582.21	gi|385803741|ref|YP_005840141.1|	-	8.6e-27	94.0	0.1	7.3e-26	91.0	0.1	1.9	1	1	0	1	1	1	1	Universal	stress	protein	family
SCO1-SenC	PF02630.9	gi|385803742|ref|YP_005840142.1|	-	5.4e-15	55.4	0.0	7.8e-15	54.9	0.0	1.1	1	0	0	1	1	1	1	SCO1/SenC
Redoxin	PF08534.5	gi|385803743|ref|YP_005840143.1|	-	5e-09	35.8	0.0	6.2e-09	35.5	0.0	1.2	1	0	0	1	1	1	1	Redoxin
Thioredoxin_8	PF13905.1	gi|385803743|ref|YP_005840143.1|	-	5.5e-08	32.8	0.0	9.2e-08	32.1	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin-like
AhpC-TSA	PF00578.16	gi|385803743|ref|YP_005840143.1|	-	6.1e-08	32.3	0.0	8.1e-08	31.9	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	family
Thioredoxin	PF00085.15	gi|385803743|ref|YP_005840143.1|	-	3.9e-06	26.4	0.0	1.3e-05	24.7	0.0	1.8	2	0	0	2	2	2	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|385803743|ref|YP_005840143.1|	-	0.00037	20.6	0.0	0.00052	20.1	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin-like	domain
Ant_C	PF05586.6	gi|385803743|ref|YP_005840143.1|	-	0.02	15.3	0.1	0.32	11.4	0.0	2.3	2	1	0	2	2	2	0	Anthrax	receptor	C-terminus	region
PC4	PF02229.11	gi|385803743|ref|YP_005840143.1|	-	0.098	11.8	0.1	0.19	10.9	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	Coactivator	p15	(PC4)
DsbD	PF02683.10	gi|385803744|ref|YP_005840144.1|	-	1.8e-14	53.8	12.4	2.6e-14	53.3	8.6	1.2	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
ABC_membrane	PF00664.18	gi|385803744|ref|YP_005840144.1|	-	3.7	6.8	7.6	0.63	9.4	0.8	2.2	2	0	0	2	2	2	0	ABC	transporter	transmembrane	region
NTP_transf_3	PF12804.2	gi|385803745|ref|YP_005840145.1|	-	6.7e-34	117.2	0.0	8.3e-34	116.9	0.0	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
CTP_transf_3	PF02348.14	gi|385803745|ref|YP_005840145.1|	-	0.00046	19.8	0.0	0.0011	18.6	0.0	1.6	1	1	0	1	1	1	1	Cytidylyltransferase
IspD	PF01128.14	gi|385803745|ref|YP_005840145.1|	-	0.0027	17.2	0.1	0.0049	16.4	0.1	1.3	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
NTP_transferase	PF00483.18	gi|385803745|ref|YP_005840145.1|	-	0.0049	16.2	0.0	0.0088	15.3	0.0	1.6	1	1	0	1	1	1	1	Nucleotidyl	transferase
Glycos_transf_2	PF00535.21	gi|385803745|ref|YP_005840145.1|	-	0.11	12.2	0.0	0.12	12.0	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
ALG3	PF05208.8	gi|385803746|ref|YP_005840146.1|	-	0.064	12.4	0.7	0.064	12.4	0.5	1.0	1	0	0	1	1	1	0	ALG3	protein
GDPD	PF03009.12	gi|385803748|ref|YP_005840148.1|	-	5.3e-28	98.2	0.4	1e-26	94.0	0.3	2.0	1	1	0	1	1	1	1	Glycerophosphoryl	diester	phosphodiesterase	family
adh_short	PF00106.20	gi|385803749|ref|YP_005840149.1|	-	1.4e-27	96.6	0.2	2.2e-27	95.9	0.1	1.3	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|385803749|ref|YP_005840149.1|	-	1.1e-11	44.9	0.0	1.5e-11	44.5	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|385803749|ref|YP_005840149.1|	-	1.5e-09	37.7	0.1	8.4e-09	35.3	0.1	1.8	1	1	0	1	1	1	1	KR	domain
NAD_binding_10	PF13460.1	gi|385803749|ref|YP_005840149.1|	-	4.8e-09	36.4	0.6	6e-09	36.1	0.4	1.3	1	1	0	1	1	1	1	NADH(P)-binding
Epimerase	PF01370.16	gi|385803749|ref|YP_005840149.1|	-	2.5e-07	30.3	0.0	3.2e-07	30.0	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.12	gi|385803749|ref|YP_005840149.1|	-	0.0017	17.2	0.3	0.0022	16.9	0.2	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
THF_DHG_CYH_C	PF02882.14	gi|385803749|ref|YP_005840149.1|	-	0.077	12.0	0.0	0.15	11.1	0.0	1.4	1	0	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
3Beta_HSD	PF01073.14	gi|385803749|ref|YP_005840149.1|	-	0.16	10.6	0.1	0.22	10.1	0.0	1.1	1	0	0	1	1	1	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RPE65	PF03055.10	gi|385803750|ref|YP_005840150.1|	-	8.1e-109	364.3	0.0	9.1e-109	364.1	0.0	1.0	1	0	0	1	1	1	1	Retinal	pigment	epithelial	membrane	protein
IMPDH	PF00478.20	gi|385803751|ref|YP_005840151.1|	-	1.3e-125	419.0	5.4	1.4e-125	418.8	3.8	1.0	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
CBS	PF00571.23	gi|385803751|ref|YP_005840151.1|	-	8.8e-24	83.0	4.0	7e-12	44.9	0.2	2.7	2	0	0	2	2	2	2	CBS	domain
NMO	PF03060.10	gi|385803751|ref|YP_005840151.1|	-	1.1e-10	41.1	5.2	5.3e-06	25.8	2.0	2.3	2	0	0	2	2	2	2	Nitronate	monooxygenase
FMN_dh	PF01070.13	gi|385803751|ref|YP_005840151.1|	-	8.6e-09	34.6	4.9	1.4e-08	33.9	3.4	1.4	1	1	0	1	1	1	1	FMN-dependent	dehydrogenase
DHO_dh	PF01180.16	gi|385803751|ref|YP_005840151.1|	-	0.00032	19.7	3.1	0.00042	19.3	1.5	1.6	2	0	0	2	2	2	1	Dihydroorotate	dehydrogenase
Glu_synthase	PF01645.12	gi|385803751|ref|YP_005840151.1|	-	0.00032	19.7	5.3	0.00057	18.9	3.7	1.3	1	0	0	1	1	1	1	Conserved	region	in	glutamate	synthase
ThiG	PF05690.9	gi|385803751|ref|YP_005840151.1|	-	0.00061	18.9	2.3	0.00061	18.9	1.6	2.2	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
Dus	PF01207.12	gi|385803751|ref|YP_005840151.1|	-	0.0013	17.6	0.1	0.0029	16.4	0.1	1.6	1	0	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
His_biosynth	PF00977.16	gi|385803751|ref|YP_005840151.1|	-	0.0021	17.3	1.7	0.0044	16.3	0.7	1.8	2	1	0	2	2	2	1	Histidine	biosynthesis	protein
HET-s_218-289	PF11558.3	gi|385803751|ref|YP_005840151.1|	-	0.07	13.1	0.3	0.19	11.7	0.2	1.7	1	0	0	1	1	1	0	Het-s	218-289
PcrB	PF01884.12	gi|385803751|ref|YP_005840151.1|	-	4.4	6.4	8.1	0.13	11.4	0.4	2.2	3	0	0	3	3	3	0	PcrB	family
DZR	PF12773.2	gi|385803754|ref|YP_005840154.1|	-	0.029	14.1	0.3	0.046	13.5	0.2	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
UPF0547	PF10571.4	gi|385803754|ref|YP_005840154.1|	-	0.055	13.1	1.2	0.11	12.1	0.8	1.5	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
UPF1_Zn_bind	PF09416.5	gi|385803754|ref|YP_005840154.1|	-	0.071	12.6	0.0	0.071	12.6	0.0	1.2	1	0	0	1	1	1	0	RNA	helicase	(UPF2	interacting	domain)
zf-RING_3	PF14369.1	gi|385803754|ref|YP_005840154.1|	-	0.16	11.9	2.3	0.16	11.9	0.2	1.9	2	0	0	2	2	2	0	zinc-finger
A2L_zn_ribbon	PF08792.5	gi|385803754|ref|YP_005840154.1|	-	0.35	10.3	2.3	3.7	7.1	0.2	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Zn-ribbon_8	PF09723.5	gi|385803754|ref|YP_005840154.1|	-	0.68	9.9	3.4	8.7	6.3	0.2	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
RNA_POL_M_15KD	PF02150.11	gi|385803755|ref|YP_005840155.1|	-	0.037	13.7	1.2	0.061	13.0	0.8	1.5	1	1	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
RecR	PF02132.10	gi|385803755|ref|YP_005840155.1|	-	0.1	12.0	0.6	3.9	6.9	0.0	2.1	2	0	0	2	2	2	0	RecR	protein
RRN7	PF11781.3	gi|385803755|ref|YP_005840155.1|	-	0.11	11.9	1.0	4.6	6.8	0.0	2.3	2	0	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
zf-FPG_IleRS	PF06827.9	gi|385803755|ref|YP_005840155.1|	-	0.12	12.0	0.1	3.3	7.4	0.0	2.1	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
zf-C2HC5	PF06221.8	gi|385803755|ref|YP_005840155.1|	-	0.12	12.1	0.6	0.18	11.6	0.4	1.3	1	1	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
YhfH	PF14149.1	gi|385803755|ref|YP_005840155.1|	-	0.15	11.8	3.7	4.9	7.0	0.2	2.1	2	0	0	2	2	2	0	YhfH-like	protein
DUF3797	PF12677.2	gi|385803755|ref|YP_005840155.1|	-	0.3	10.7	2.9	0.56	9.8	0.1	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
Zn-ribbon_8	PF09723.5	gi|385803755|ref|YP_005840155.1|	-	0.32	10.9	2.4	2	8.4	1.7	1.9	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-IS66	PF13005.2	gi|385803755|ref|YP_005840155.1|	-	0.37	10.8	1.9	1.3	9.0	0.1	2.0	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-dskA_traR	PF01258.12	gi|385803755|ref|YP_005840155.1|	-	1.4	8.7	4.4	7.1	6.4	0.2	2.1	1	1	1	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
2_5_RNA_ligase2	PF13563.1	gi|385803757|ref|YP_005840157.1|	-	2.4e-18	66.3	0.0	3e-18	65.9	0.0	1.1	1	0	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
LigT_PEase	PF02834.11	gi|385803757|ref|YP_005840157.1|	-	0.00014	21.7	0.0	0.19	11.7	0.0	2.4	2	1	0	2	2	2	2	LigT	like	Phosphoesterase
AKAP7_NLS	PF10469.4	gi|385803757|ref|YP_005840157.1|	-	0.0024	17.5	0.0	0.0033	17.1	0.0	1.2	1	0	0	1	1	1	1	AKAP7	2'5'	RNA	ligase-like	domain
NusB	PF01029.13	gi|385803757|ref|YP_005840157.1|	-	0.12	12.3	0.1	0.21	11.5	0.0	1.4	1	1	0	1	1	1	0	NusB	family
Acyl-CoA_dh_1	PF00441.19	gi|385803758|ref|YP_005840158.1|	-	1.2e-42	145.5	3.3	2.5e-42	144.5	0.9	2.0	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.11	gi|385803758|ref|YP_005840158.1|	-	6.5e-21	75.0	0.6	1.7e-20	73.6	0.4	1.7	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.14	gi|385803758|ref|YP_005840158.1|	-	7.3e-21	73.4	0.4	1.6e-20	72.3	0.3	1.6	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.6	gi|385803758|ref|YP_005840158.1|	-	5.2e-17	62.3	3.3	1.1e-16	61.2	2.3	1.6	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Mor	PF08765.6	gi|385803758|ref|YP_005840158.1|	-	0.069	12.9	0.3	5.5	6.8	0.0	2.7	2	1	0	2	2	2	0	Mor	transcription	activator	family
Polysacc_synt_C	PF14667.1	gi|385803759|ref|YP_005840159.1|	-	1e-05	25.3	16.2	1e-05	25.3	11.2	3.8	2	2	2	4	4	4	1	Polysaccharide	biosynthesis	C-terminal	domain
NUDIX	PF00293.23	gi|385803760|ref|YP_005840160.1|	-	1e-17	64.0	0.3	1.3e-17	63.6	0.2	1.1	1	0	0	1	1	1	1	NUDIX	domain
PaaX	PF07848.7	gi|385803761|ref|YP_005840161.1|	-	0.049	13.6	0.0	0.12	12.4	0.0	1.6	1	0	0	1	1	1	0	PaaX-like	protein
PqqD	PF05402.7	gi|385803762|ref|YP_005840162.1|	-	0.013	15.5	0.1	0.035	14.1	0.1	1.8	1	0	0	1	1	1	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
ECH	PF00378.15	gi|385803763|ref|YP_005840163.1|	-	4.4e-65	219.2	0.1	4.9e-65	219.0	0.1	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
SDH_sah	PF01972.11	gi|385803763|ref|YP_005840163.1|	-	0.0018	17.1	0.0	0.0032	16.2	0.0	1.3	1	0	0	1	1	1	1	Serine	dehydrogenase	proteinase
TFIIS_C	PF01096.13	gi|385803764|ref|YP_005840164.1|	-	4.3e-17	61.4	4.1	4.3e-17	61.4	2.8	3.2	3	0	0	3	3	3	1	Transcription	factor	S-II	(TFIIS)
RNA_POL_M_15KD	PF02150.11	gi|385803764|ref|YP_005840164.1|	-	5.4e-07	29.1	1.3	5.4e-07	29.1	0.9	3.1	3	0	0	3	3	3	1	RNA	polymerases	M/15	Kd	subunit
DZR	PF12773.2	gi|385803764|ref|YP_005840164.1|	-	1.4e-06	28.0	9.0	0.00034	20.3	0.4	2.5	2	1	0	2	2	2	2	Double	zinc	ribbon
Prok-RING_1	PF14446.1	gi|385803764|ref|YP_005840164.1|	-	3.2e-06	26.7	10.1	6e-05	22.6	1.5	3.1	3	0	0	3	3	3	1	Prokaryotic	RING	finger	family	1
OrfB_Zn_ribbon	PF07282.6	gi|385803764|ref|YP_005840164.1|	-	6.4e-06	25.7	11.5	0.0017	17.9	0.7	2.4	1	1	0	2	2	2	2	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1595	PF12760.2	gi|385803764|ref|YP_005840164.1|	-	0.00011	21.8	6.8	0.00023	20.8	0.4	2.6	2	1	0	2	2	2	1	Transposase	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|385803764|ref|YP_005840164.1|	-	0.00011	21.2	8.5	0.51	9.6	0.1	4.1	4	0	0	4	4	4	1	zinc-ribbon	domain
UPF0547	PF10571.4	gi|385803764|ref|YP_005840164.1|	-	0.00015	21.3	6.5	0.61	9.8	0.0	4.0	4	0	0	4	4	4	1	Uncharacterised	protein	family	UPF0547
PhnA_Zn_Ribbon	PF08274.7	gi|385803764|ref|YP_005840164.1|	-	0.00022	20.9	10.4	0.2	11.4	0.1	4.1	4	0	0	4	4	4	1	PhnA	Zinc-Ribbon
zinc_ribbon_2	PF13240.1	gi|385803764|ref|YP_005840164.1|	-	0.0006	19.2	7.7	2.3	7.8	0.1	4.1	4	0	0	4	4	4	1	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|385803764|ref|YP_005840164.1|	-	0.0053	16.0	14.0	0.036	13.3	1.8	3.7	2	2	0	2	2	2	1	TFIIB	zinc-binding
Nudix_N_2	PF14803.1	gi|385803764|ref|YP_005840164.1|	-	0.0066	16.1	10.5	1.1	9.0	0.1	3.8	3	1	0	3	3	3	1	Nudix	N-terminal
DUF2387	PF09526.5	gi|385803764|ref|YP_005840164.1|	-	0.0079	16.0	9.7	0.016	15.1	1.1	2.3	2	0	0	2	2	2	1	Probable	metal-binding	protein	(DUF2387)
RRN7	PF11781.3	gi|385803764|ref|YP_005840164.1|	-	0.0091	15.4	9.4	4.4	6.9	0.6	4.1	4	0	0	4	4	4	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
Lar_restr_allev	PF14354.1	gi|385803764|ref|YP_005840164.1|	-	0.013	15.8	13.0	0.057	13.7	0.7	2.7	2	1	0	2	2	2	0	Restriction	alleviation	protein	Lar
PHF5	PF03660.9	gi|385803764|ref|YP_005840164.1|	-	0.013	15.5	5.9	0.21	11.6	0.5	2.1	1	1	1	2	2	2	0	PHF5-like	protein
zf-C4pol	PF14260.1	gi|385803764|ref|YP_005840164.1|	-	0.014	15.4	4.5	0.38	10.7	0.1	2.3	1	1	1	2	2	2	0	C4-type	zinc-finger	of	DNA	polymerase	delta
PolC_DP2	PF03833.8	gi|385803764|ref|YP_005840164.1|	-	0.014	13.0	8.4	0.22	9.1	1.1	2.0	1	1	1	2	2	2	0	DNA	polymerase	II	large	subunit	DP2
DUF4428	PF14471.1	gi|385803764|ref|YP_005840164.1|	-	0.023	14.4	0.5	0.023	14.4	0.3	2.6	3	0	0	3	3	2	0	Domain	of	unknown	function	(DUF4428)
Zn-ribbon_8	PF09723.5	gi|385803764|ref|YP_005840164.1|	-	0.025	14.5	10.4	3.1	7.8	0.0	3.9	3	1	0	3	3	3	0	Zinc	ribbon	domain
zf-IS66	PF13005.2	gi|385803764|ref|YP_005840164.1|	-	0.029	14.3	6.9	25	4.9	0.0	4.1	4	0	0	4	4	4	0	zinc-finger	binding	domain	of	transposase	IS66
DUF164	PF02591.10	gi|385803764|ref|YP_005840164.1|	-	0.039	13.7	7.0	12	5.8	0.0	3.9	3	1	1	4	4	4	0	Putative	zinc	ribbon	domain
zinc_ribbon_5	PF13719.1	gi|385803764|ref|YP_005840164.1|	-	0.041	13.4	7.6	0.52	9.9	0.1	3.7	4	0	0	4	4	4	0	zinc-ribbon	domain
GFA	PF04828.9	gi|385803764|ref|YP_005840164.1|	-	0.046	13.6	8.3	0.16	11.9	0.1	3.1	1	1	3	4	4	4	0	Glutathione-dependent	formaldehyde-activating	enzyme
NinF	PF05810.7	gi|385803764|ref|YP_005840164.1|	-	0.047	13.4	7.4	0.14	11.9	1.0	3.0	2	1	1	3	3	3	0	NinF	protein
A2L_zn_ribbon	PF08792.5	gi|385803764|ref|YP_005840164.1|	-	0.052	13.0	14.2	0.28	10.6	0.1	4.1	3	1	0	4	4	4	0	A2L	zinc	ribbon	domain
zf-UBP	PF02148.14	gi|385803764|ref|YP_005840164.1|	-	0.076	13.1	5.5	0.084	12.9	0.8	2.3	1	1	1	2	2	2	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
DNA_RNApol_7kD	PF03604.8	gi|385803764|ref|YP_005840164.1|	-	0.086	12.3	14.3	1	8.9	0.1	4.0	3	1	1	4	4	4	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zinc_ribbon_4	PF13717.1	gi|385803764|ref|YP_005840164.1|	-	0.088	12.5	9.4	0.53	10.0	0.2	3.6	4	0	0	4	4	3	0	zinc-ribbon	domain
HypA	PF01155.14	gi|385803764|ref|YP_005840164.1|	-	0.1	12.3	10.0	0.33	10.6	0.9	2.8	1	1	2	3	3	3	0	Hydrogenase	expression/synthesis	hypA	family
zf-RING_3	PF14369.1	gi|385803764|ref|YP_005840164.1|	-	0.12	12.4	9.3	1	9.4	0.1	3.5	3	1	0	3	3	3	0	zinc-finger
Tnp_zf-ribbon_2	PF13842.1	gi|385803764|ref|YP_005840164.1|	-	0.12	12.8	5.3	40	4.7	0.6	3.2	3	0	0	3	3	3	0	DDE_Tnp_1-like	zinc-ribbon
zinc-ribbons_6	PF07191.7	gi|385803764|ref|YP_005840164.1|	-	0.16	11.7	8.5	0.92	9.3	0.4	2.5	2	1	0	2	2	2	0	zinc-ribbons
YhfH	PF14149.1	gi|385803764|ref|YP_005840164.1|	-	0.16	11.7	14.9	1.2	8.9	3.3	4.0	3	1	1	4	4	4	0	YhfH-like	protein
DUF3268	PF11672.3	gi|385803764|ref|YP_005840164.1|	-	0.19	11.7	3.7	2.3	8.3	0.5	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3268)
FYVE_2	PF02318.11	gi|385803764|ref|YP_005840164.1|	-	0.19	11.5	0.3	0.19	11.5	0.2	2.3	2	1	0	2	2	2	0	FYVE-type	zinc	finger
zf-ISL3	PF14690.1	gi|385803764|ref|YP_005840164.1|	-	0.28	11.2	7.6	0.97	9.5	0.0	3.7	3	1	0	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
C1_1	PF00130.17	gi|385803764|ref|YP_005840164.1|	-	0.55	10.0	9.8	0.27	10.9	2.0	2.4	2	1	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-C4_Topoisom	PF01396.14	gi|385803764|ref|YP_005840164.1|	-	0.62	9.6	8.4	2	7.9	0.1	3.5	4	0	0	4	4	4	0	Topoisomerase	DNA	binding	C4	zinc	finger
Mut7-C	PF01927.11	gi|385803764|ref|YP_005840164.1|	-	0.72	9.8	4.1	4.9	7.1	2.4	2.0	1	1	1	2	2	2	0	Mut7-C	RNAse	domain
ADK_lid	PF05191.9	gi|385803764|ref|YP_005840164.1|	-	0.8	9.4	10.7	7	6.4	0.1	4.0	4	0	0	4	4	4	0	Adenylate	kinase,	active	site	lid
Terminase_GpA	PF05876.7	gi|385803764|ref|YP_005840164.1|	-	0.84	7.9	6.8	0.084	11.2	1.4	1.6	1	1	0	2	2	2	0	Phage	terminase	large	subunit	(GpA)
DUF2082	PF09855.4	gi|385803764|ref|YP_005840164.1|	-	0.85	9.5	8.5	1.5	8.7	1.2	3.3	2	2	1	3	3	3	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
Jiv90	PF14901.1	gi|385803764|ref|YP_005840164.1|	-	1.1	9.2	8.1	6.9	6.7	0.6	2.4	2	1	0	2	2	2	0	Cleavage	inducing	molecular	chaperone
Herpes_UL49_1	PF03117.9	gi|385803764|ref|YP_005840164.1|	-	1.4	7.9	5.7	11	4.9	0.1	3.0	1	1	2	3	3	3	0	UL49	family
Rubredoxin	PF00301.15	gi|385803764|ref|YP_005840164.1|	-	1.4	8.8	9.0	8.5	6.3	0.6	3.7	3	1	0	3	3	3	0	Rubredoxin
DUF3797	PF12677.2	gi|385803764|ref|YP_005840164.1|	-	1.5	8.5	6.6	1.5	8.5	0.0	3.2	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF3797)
zf-C2HC5	PF06221.8	gi|385803764|ref|YP_005840164.1|	-	1.5	8.6	6.7	0.63	9.8	0.2	2.7	2	1	0	2	2	2	0	Putative	zinc	finger	motif,	C2HC5-type
NOB1_Zn_bind	PF08772.6	gi|385803764|ref|YP_005840164.1|	-	1.5	8.6	11.6	5	7.0	1.6	3.2	2	2	0	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Ribosomal_L37ae	PF01780.14	gi|385803764|ref|YP_005840164.1|	-	1.6	8.6	7.3	2.6	7.9	0.6	2.7	1	1	0	2	2	2	0	Ribosomal	L37ae	protein	family
TerY-C	PF15616.1	gi|385803764|ref|YP_005840164.1|	-	1.8	8.5	8.5	0.29	11.0	0.6	2.1	1	1	1	2	2	2	0	TerY-C	metal	binding	domain
DUF2072	PF09845.4	gi|385803764|ref|YP_005840164.1|	-	2.3	8.1	7.0	5.4	6.9	0.5	2.5	1	1	1	2	2	2	0	Zn-ribbon	containing	protein	(DUF2072)
Cytochrom_CIII	PF02085.11	gi|385803764|ref|YP_005840164.1|	-	2.5	8.2	8.9	4.2	7.5	1.4	2.3	1	1	1	2	2	2	0	Class	III	cytochrome	C	family
zf-trcl	PF13451.1	gi|385803764|ref|YP_005840164.1|	-	2.7	7.6	12.1	1.5	8.4	0.2	3.9	4	0	0	4	4	4	0	Probable	zinc-binding	domain
FdhE	PF04216.7	gi|385803764|ref|YP_005840164.1|	-	3.2	7.3	7.5	0.25	11.0	0.7	1.9	1	1	0	2	2	2	0	Protein	involved	in	formate	dehydrogenase	formation
Cys_rich_KTR	PF14205.1	gi|385803764|ref|YP_005840164.1|	-	3.6	7.1	7.2	1.5	8.3	0.1	2.9	4	0	0	4	4	3	0	Cysteine-rich	KTR
Methyltransf_13	PF08421.6	gi|385803764|ref|YP_005840164.1|	-	3.7	7.1	6.6	16	5.0	0.0	3.5	3	1	1	4	4	4	0	Putative	zinc	binding	domain
zf-UBR	PF02207.15	gi|385803764|ref|YP_005840164.1|	-	3.8	7.3	11.1	2.2	8.0	0.4	3.0	2	1	1	3	3	3	0	Putative	zinc	finger	in	N-recognin	(UBR	box)
zf-NADH-PPase	PF09297.6	gi|385803764|ref|YP_005840164.1|	-	4	7.0	9.9	13	5.4	1.0	3.8	3	1	0	3	3	3	0	NADH	pyrophosphatase	zinc	ribbon	domain
NCD3G	PF07562.9	gi|385803764|ref|YP_005840164.1|	-	4.1	7.1	10.5	0.62	9.8	0.4	2.9	2	2	0	2	2	2	0	Nine	Cysteines	Domain	of	family	3	GPCR
zf-RING_5	PF14634.1	gi|385803764|ref|YP_005840164.1|	-	4.4	7.1	11.8	7.7	6.3	1.7	3.3	1	1	1	2	2	2	0	zinc-RING	finger	domain
IBR	PF01485.16	gi|385803764|ref|YP_005840164.1|	-	4.6	7.1	13.3	5.3e+03	-2.7	9.3	3.2	1	1	0	1	1	0	0	IBR	domain
DUF2296	PF10058.4	gi|385803764|ref|YP_005840164.1|	-	5.2	6.8	9.6	7.4	6.3	1.7	3.1	2	2	0	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
zf-B_box	PF00643.19	gi|385803764|ref|YP_005840164.1|	-	6.5	6.7	11.7	45	4.0	2.1	3.8	3	1	0	3	3	3	0	B-box	zinc	finger
Baculo_LEF5_C	PF11792.3	gi|385803764|ref|YP_005840164.1|	-	7	6.1	10.7	0.43	10.0	1.2	3.1	3	1	0	3	3	3	0	Baculoviridae	late	expression	factor	5	C-terminal	domain
DUF2066	PF09839.4	gi|385803765|ref|YP_005840165.1|	-	0.062	12.4	0.2	0.087	11.9	0.1	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2066)
Methyltransf_18	PF12847.2	gi|385803766|ref|YP_005840166.1|	-	1.2e-14	54.8	0.0	1.7e-14	54.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|385803766|ref|YP_005840166.1|	-	3.2e-14	52.9	1.2	2.1e-13	50.3	0.8	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
GCD14	PF08704.5	gi|385803766|ref|YP_005840166.1|	-	2e-11	43.8	0.0	1.1e-09	38.1	0.0	2.0	1	1	1	2	2	2	1	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_31	PF13847.1	gi|385803766|ref|YP_005840166.1|	-	5.1e-09	35.8	0.0	7.1e-09	35.4	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|385803766|ref|YP_005840166.1|	-	1.2e-08	34.8	0.0	3.5e-08	33.3	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|385803766|ref|YP_005840166.1|	-	3.3e-08	33.0	0.0	4.9e-08	32.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.8	gi|385803766|ref|YP_005840166.1|	-	7e-08	31.9	0.1	9.6e-08	31.4	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
PCMT	PF01135.14	gi|385803766|ref|YP_005840166.1|	-	2.3e-07	30.5	0.1	3.1e-07	30.1	0.1	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
RrnaAD	PF00398.15	gi|385803766|ref|YP_005840166.1|	-	4.3e-06	25.9	0.0	1.3e-05	24.4	0.0	1.6	2	0	0	2	2	2	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_11	PF08241.7	gi|385803766|ref|YP_005840166.1|	-	2.3e-05	24.7	0.0	4.9e-05	23.7	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|385803766|ref|YP_005840166.1|	-	3.4e-05	24.2	0.0	5.5e-05	23.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_3	PF01596.12	gi|385803766|ref|YP_005840166.1|	-	0.0002	20.4	0.0	0.00026	20.1	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase
CMAS	PF02353.15	gi|385803766|ref|YP_005840166.1|	-	0.0006	18.9	0.0	0.00074	18.6	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
UPF0020	PF01170.13	gi|385803766|ref|YP_005840166.1|	-	0.0023	17.5	0.0	0.0029	17.1	0.0	1.2	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Met_10	PF02475.11	gi|385803766|ref|YP_005840166.1|	-	0.011	15.3	0.0	0.015	14.9	0.0	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
Cons_hypoth95	PF03602.10	gi|385803766|ref|YP_005840166.1|	-	0.011	15.0	0.0	0.016	14.6	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	protein	95
Methyltransf_25	PF13649.1	gi|385803766|ref|YP_005840166.1|	-	0.021	15.1	0.0	0.031	14.6	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
TehB	PF03848.9	gi|385803766|ref|YP_005840166.1|	-	0.074	12.2	0.0	0.12	11.5	0.0	1.2	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
Methyltransf_15	PF09445.5	gi|385803766|ref|YP_005840166.1|	-	0.11	12.0	0.0	0.15	11.6	0.0	1.1	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
FmrO	PF07091.6	gi|385803766|ref|YP_005840166.1|	-	0.17	10.8	0.0	0.26	10.2	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	methyltransferase	(FmrO)
NAC	PF01849.13	gi|385803767|ref|YP_005840167.1|	-	9.2e-18	63.5	0.7	1.3e-17	63.0	0.5	1.3	1	0	0	1	1	1	1	NAC	domain
UBA	PF00627.26	gi|385803767|ref|YP_005840167.1|	-	0.00018	21.2	0.2	0.00018	21.2	0.1	2.2	2	0	0	2	2	2	1	UBA/TS-N	domain
UBA_4	PF14555.1	gi|385803767|ref|YP_005840167.1|	-	0.004	16.6	0.5	0.0083	15.6	0.3	1.5	1	0	0	1	1	1	1	UBA-like	domain
DUF3867	PF12983.2	gi|385803767|ref|YP_005840167.1|	-	0.015	15.2	0.1	0.023	14.7	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3867)
LptC	PF06835.8	gi|385803767|ref|YP_005840167.1|	-	0.082	12.3	0.2	0.12	11.7	0.1	1.4	1	1	0	1	1	1	0	Lipopolysaccharide-assembly,	LptC-related
MM_CoA_mutase	PF01642.17	gi|385803768|ref|YP_005840168.1|	-	3.3e-204	678.8	2.9	3.8e-204	678.6	2.0	1.0	1	0	0	1	1	1	1	Methylmalonyl-CoA	mutase
Glyoxalase_4	PF13669.1	gi|385803769|ref|YP_005840169.1|	-	6.4e-16	58.3	0.3	7.4e-16	58.1	0.2	1.0	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.1	gi|385803769|ref|YP_005840169.1|	-	1.4e-07	31.5	0.2	1.5e-07	31.4	0.2	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_2	PF12681.2	gi|385803769|ref|YP_005840169.1|	-	7.7e-05	23.2	0.1	0.00013	22.5	0.0	1.5	1	1	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase	PF00903.20	gi|385803769|ref|YP_005840169.1|	-	0.00027	20.8	0.1	0.00054	19.9	0.1	1.6	1	1	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
AMP-binding	PF00501.23	gi|385803770|ref|YP_005840170.1|	-	1.3e-79	267.5	1.0	1.6e-79	267.2	0.7	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|385803770|ref|YP_005840170.1|	-	8.7e-18	65.0	1.6	2e-17	63.9	0.2	2.3	2	1	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
Metallophos_2	PF12850.2	gi|385803771|ref|YP_005840171.1|	-	8.7e-09	35.3	1.8	1.8e-08	34.3	1.2	1.5	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|385803771|ref|YP_005840171.1|	-	0.00021	20.7	1.6	0.0012	18.3	0.0	2.2	2	0	0	2	2	2	1	Calcineurin-like	phosphoesterase
tRNA_anti-codon	PF01336.20	gi|385803773|ref|YP_005840173.1|	-	0.0024	17.6	6.4	0.24	11.2	0.2	3.7	3	1	0	3	3	3	3	OB-fold	nucleic	acid	binding	domain
UPF0118	PF01594.11	gi|385803774|ref|YP_005840174.1|	-	2.2e-36	125.5	33.0	2.8e-36	125.1	22.9	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF20
Prominin	PF05478.6	gi|385803774|ref|YP_005840174.1|	-	0.071	10.6	0.2	0.11	10.0	0.2	1.3	1	0	0	1	1	1	0	Prominin
DUF2830	PF11125.3	gi|385803774|ref|YP_005840174.1|	-	1.9	8.2	8.8	24	4.7	0.0	4.2	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF2830)
PadR	PF03551.9	gi|385803775|ref|YP_005840175.1|	-	6.1e-16	57.9	1.4	7.4e-16	57.6	1.0	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.1	gi|385803775|ref|YP_005840175.1|	-	0.0011	19.2	0.0	0.0014	18.8	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.1	gi|385803775|ref|YP_005840175.1|	-	0.0087	15.8	0.0	0.012	15.3	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF1495	PF07381.6	gi|385803775|ref|YP_005840175.1|	-	0.021	14.4	0.0	0.032	13.8	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
HypA	PF01155.14	gi|385803776|ref|YP_005840176.1|	-	0.0077	15.9	0.8	0.018	14.6	0.6	1.6	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
DZR	PF12773.2	gi|385803776|ref|YP_005840176.1|	-	0.011	15.5	0.7	0.023	14.5	0.5	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
Zn_Tnp_IS1595	PF12760.2	gi|385803776|ref|YP_005840176.1|	-	0.017	14.8	2.0	4	7.3	0.2	2.4	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
UPF0547	PF10571.4	gi|385803776|ref|YP_005840176.1|	-	0.018	14.6	3.9	0.082	12.6	0.4	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
FdhE	PF04216.7	gi|385803776|ref|YP_005840176.1|	-	0.02	14.6	0.9	0.1	12.2	0.3	2.0	2	0	0	2	2	2	0	Protein	involved	in	formate	dehydrogenase	formation
zf-ribbon_3	PF13248.1	gi|385803776|ref|YP_005840176.1|	-	0.027	13.6	2.5	0.41	9.9	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|385803776|ref|YP_005840176.1|	-	0.027	13.7	0.4	0.055	12.8	0.3	1.5	1	0	0	1	1	1	0	TFIIB	zinc-binding
NinG	PF05766.7	gi|385803776|ref|YP_005840176.1|	-	0.07	12.8	0.0	0.11	12.2	0.0	1.2	1	0	0	1	1	1	0	Bacteriophage	Lambda	NinG	protein
zinc_ribbon_5	PF13719.1	gi|385803776|ref|YP_005840176.1|	-	0.079	12.5	2.1	1.5	8.4	0.2	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|385803776|ref|YP_005840176.1|	-	0.091	12.7	2.1	0.29	11.1	1.5	1.8	1	1	0	1	1	1	0	Zinc	ribbon	domain
DNA_RNApol_7kD	PF03604.8	gi|385803776|ref|YP_005840176.1|	-	0.094	12.1	0.3	0.19	11.1	0.2	1.5	1	0	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zinc_ribbon_4	PF13717.1	gi|385803776|ref|YP_005840176.1|	-	0.15	11.8	2.5	2.2	8.0	0.3	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|385803776|ref|YP_005840176.1|	-	0.27	10.9	1.8	0.53	9.9	1.3	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zinc_ribbon_2	PF13240.1	gi|385803776|ref|YP_005840176.1|	-	0.28	10.7	2.5	4.1	7.0	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
PhnA_Zn_Ribbon	PF08274.7	gi|385803776|ref|YP_005840176.1|	-	0.44	10.3	7.0	1.7	8.4	2.8	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
zf-tcix	PF14952.1	gi|385803776|ref|YP_005840176.1|	-	0.54	9.6	2.9	3.2	7.1	0.1	2.3	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-IS66	PF13005.2	gi|385803776|ref|YP_005840176.1|	-	9.6	6.2	7.9	11	6.0	0.2	3.3	2	1	1	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
DoxX	PF07681.7	gi|385803777|ref|YP_005840177.1|	-	2.2e-08	34.3	20.3	1.2e-07	32.0	3.4	3.3	2	1	0	2	2	2	2	DoxX
DoxD	PF04173.8	gi|385803777|ref|YP_005840177.1|	-	0.66	9.6	12.3	15	5.2	0.8	3.7	2	1	1	3	3	3	0	TQO	small	subunit	DoxD
DDE_5	PF13546.1	gi|385803778|ref|YP_005840178.1|	-	5.5e-20	71.3	0.0	8.7e-20	70.6	0.0	1.2	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.16	gi|385803778|ref|YP_005840178.1|	-	2.8e-17	62.9	0.4	5.2e-17	62.0	0.1	1.6	2	1	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.7	gi|385803778|ref|YP_005840178.1|	-	0.00011	21.3	0.5	0.00045	19.3	0.3	1.8	1	1	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1_6	PF13751.1	gi|385803778|ref|YP_005840178.1|	-	0.01	15.8	0.0	0.035	14.1	0.0	1.9	2	0	0	2	2	2	0	Transposase	DDE	domain
Hydrolase_3	PF08282.7	gi|385803780|ref|YP_005840180.1|	-	3.2e-11	43.3	0.0	0.00014	21.5	0.0	2.4	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|385803780|ref|YP_005840180.1|	-	0.0012	19.0	1.1	0.028	14.5	0.0	2.5	2	1	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
CutC	PF03932.9	gi|385803780|ref|YP_005840180.1|	-	0.023	13.9	0.1	0.04	13.1	0.1	1.4	1	0	0	1	1	1	0	CutC	family
MR_MLE_C	PF13378.1	gi|385803781|ref|YP_005840181.1|	-	7.9e-30	103.0	0.2	2.5e-29	101.4	0.0	1.9	3	0	0	3	3	3	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.11	gi|385803781|ref|YP_005840181.1|	-	2.3e-15	56.6	0.1	4.9e-15	55.5	0.1	1.5	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
MR_MLE	PF01188.16	gi|385803781|ref|YP_005840181.1|	-	4.8e-12	46.2	2.3	1.1e-10	41.8	0.1	3.6	4	0	0	4	4	4	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	C-terminal	domain
SBP_bac_11	PF13531.1	gi|385803781|ref|YP_005840181.1|	-	0.0092	15.6	0.2	0.02	14.5	0.1	1.6	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
Rubrerythrin	PF02915.12	gi|385803782|ref|YP_005840182.1|	-	0.00075	19.8	1.3	0.0016	18.7	0.9	1.6	1	0	0	1	1	1	1	Rubrerythrin
Fer2	PF00111.22	gi|385803783|ref|YP_005840183.1|	-	2.2e-12	46.5	2.0	2.8e-12	46.2	1.4	1.1	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.1	gi|385803783|ref|YP_005840183.1|	-	0.028	14.2	0.1	0.031	14.0	0.1	1.3	1	0	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.1	gi|385803783|ref|YP_005840183.1|	-	0.078	12.8	0.6	0.41	10.4	0.4	2.2	1	1	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
DHODB_Fe-S_bind	PF10418.4	gi|385803783|ref|YP_005840183.1|	-	0.12	11.8	1.3	0.2	11.1	0.2	1.9	3	0	0	3	3	3	0	Iron-sulfur	cluster	binding	domain	of	dihydroorotate	dehydrogenase	B
DUF3054	PF11255.3	gi|385803784|ref|YP_005840184.1|	-	2.2e-26	91.8	10.2	2.6e-26	91.6	7.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3054)
Methyltransf_11	PF08241.7	gi|385803785|ref|YP_005840185.1|	-	5e-18	65.3	0.0	7.4e-18	64.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|385803785|ref|YP_005840185.1|	-	4.9e-14	52.3	0.0	6.1e-14	52.0	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|385803785|ref|YP_005840185.1|	-	5.6e-10	39.5	0.0	1.1e-09	38.6	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|385803785|ref|YP_005840185.1|	-	1.3e-08	34.6	0.0	2.1e-08	33.8	0.0	1.3	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|385803785|ref|YP_005840185.1|	-	2.7e-07	29.9	0.0	4.9e-07	29.1	0.0	1.4	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_25	PF13649.1	gi|385803785|ref|YP_005840185.1|	-	1.3e-06	28.7	0.0	1.9e-06	28.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|385803785|ref|YP_005840185.1|	-	1.4e-06	28.8	0.1	3.1e-06	27.7	0.1	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_8	PF05148.10	gi|385803785|ref|YP_005840185.1|	-	0.00035	20.2	0.0	0.00045	19.9	0.0	1.1	1	0	0	1	1	1	1	Hypothetical	methyltransferase
MetW	PF07021.7	gi|385803785|ref|YP_005840185.1|	-	0.0023	17.3	0.0	0.0036	16.7	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_2	PF00891.13	gi|385803785|ref|YP_005840185.1|	-	0.12	11.5	0.4	0.15	11.2	0.3	1.1	1	0	0	1	1	1	0	O-methyltransferase
Methyltransf_26	PF13659.1	gi|385803785|ref|YP_005840185.1|	-	0.14	12.2	0.8	0.39	10.7	0.6	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
Acetyltransf_1	PF00583.19	gi|385803786|ref|YP_005840186.1|	-	0.0013	18.7	0.0	0.0022	18.0	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
FR47	PF08445.5	gi|385803786|ref|YP_005840186.1|	-	0.0055	16.4	0.0	0.011	15.4	0.0	1.5	1	1	0	1	1	1	1	FR47-like	protein
YpzI	PF14140.1	gi|385803786|ref|YP_005840186.1|	-	0.05	13.1	0.1	0.12	11.9	0.0	1.6	1	0	0	1	1	1	0	YpzI-like	protein
Acetyltransf_CG	PF14542.1	gi|385803786|ref|YP_005840186.1|	-	0.094	12.6	0.0	0.21	11.5	0.0	1.6	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
XPG_I	PF00867.13	gi|385803787|ref|YP_005840187.1|	-	2e-25	88.6	0.0	3.6e-25	87.8	0.0	1.4	1	0	0	1	1	1	1	XPG	I-region
XPG_N	PF00752.12	gi|385803787|ref|YP_005840187.1|	-	4.5e-12	46.1	0.0	8.2e-12	45.2	0.0	1.4	1	0	0	1	1	1	1	XPG	N-terminal	domain
5_3_exonuc	PF01367.15	gi|385803787|ref|YP_005840187.1|	-	0.0021	18.2	0.0	0.0041	17.3	0.0	1.5	1	0	0	1	1	1	1	5'-3'	exonuclease,	C-terminal	SAM	fold
DUF3179	PF11376.3	gi|385803789|ref|YP_005840189.1|	-	9.8e-99	329.8	0.1	1.2e-98	329.5	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3179)
Flocculin_t3	PF13928.1	gi|385803789|ref|YP_005840189.1|	-	0.24	11.5	0.2	0.24	11.5	0.2	2.6	3	0	0	3	3	3	0	Flocculin	type	3	repeat
MerT	PF02411.10	gi|385803790|ref|YP_005840190.1|	-	0.62	9.8	10.6	0.1	12.4	4.2	2.0	2	1	0	2	2	2	0	MerT	mercuric	transport	protein
zinc_ribbon_5	PF13719.1	gi|385803791|ref|YP_005840191.1|	-	0.00048	19.6	0.6	0.069	12.7	0.1	2.3	2	0	0	2	2	2	1	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|385803791|ref|YP_005840191.1|	-	0.0007	19.2	0.6	0.076	12.7	0.1	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|385803791|ref|YP_005840191.1|	-	0.0018	18.1	2.4	0.75	9.8	0.7	2.1	2	0	0	2	2	2	2	Zinc	ribbon	domain
CpXC	PF14353.1	gi|385803791|ref|YP_005840191.1|	-	0.0026	17.7	1.2	0.004	17.1	0.8	1.4	1	1	0	1	1	1	1	CpXC	protein
zf-ribbon_3	PF13248.1	gi|385803791|ref|YP_005840191.1|	-	0.0065	15.6	0.4	1.3	8.3	0.0	2.3	2	0	0	2	2	2	1	zinc-ribbon	domain
DUF4379	PF14311.1	gi|385803791|ref|YP_005840191.1|	-	0.0082	15.9	0.4	0.0082	15.9	0.3	2.1	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4379)
HypA	PF01155.14	gi|385803791|ref|YP_005840191.1|	-	0.011	15.4	0.3	0.014	15.0	0.2	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zf-PHD-like	PF15446.1	gi|385803791|ref|YP_005840191.1|	-	0.012	14.8	0.6	0.013	14.7	0.4	1.0	1	0	0	1	1	1	0	PHD/FYVE-zinc-finger	like	domain
TF_Zn_Ribbon	PF08271.7	gi|385803791|ref|YP_005840191.1|	-	0.013	14.7	3.3	0.2	11.0	0.0	2.4	2	1	0	2	2	2	0	TFIIB	zinc-binding
zf-C2H2	PF00096.21	gi|385803791|ref|YP_005840191.1|	-	0.014	15.6	1.5	2.5	8.6	0.1	2.2	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
zf-Sec23_Sec24	PF04810.10	gi|385803791|ref|YP_005840191.1|	-	0.026	14.0	1.0	4.3	6.9	0.1	2.2	2	0	0	2	2	2	0	Sec23/Sec24	zinc	finger
DUF2296	PF10058.4	gi|385803791|ref|YP_005840191.1|	-	0.03	14.0	0.3	0.9	9.3	0.0	2.1	2	0	0	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
OrfB_Zn_ribbon	PF07282.6	gi|385803791|ref|YP_005840191.1|	-	0.032	13.8	0.5	1.7	8.3	0.0	2.1	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
DUF35_N	PF12172.3	gi|385803791|ref|YP_005840191.1|	-	0.037	13.9	1.0	1.5	8.7	0.1	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Terminase_GpA	PF05876.7	gi|385803791|ref|YP_005840191.1|	-	0.044	12.1	0.3	0.046	12.0	0.2	1.0	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
UPF0547	PF10571.4	gi|385803791|ref|YP_005840191.1|	-	0.05	13.2	1.9	1.7	8.4	0.1	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
PhnA_Zn_Ribbon	PF08274.7	gi|385803791|ref|YP_005840191.1|	-	0.051	13.3	0.0	0.14	11.9	0.0	1.7	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
SprT-like	PF10263.4	gi|385803791|ref|YP_005840191.1|	-	0.06	13.0	0.3	0.085	12.5	0.2	1.3	1	1	0	1	1	1	0	SprT-like	family
Mut7-C	PF01927.11	gi|385803791|ref|YP_005840191.1|	-	0.06	13.3	0.7	0.09	12.7	0.5	1.3	1	0	0	1	1	1	0	Mut7-C	RNAse	domain
A2L_zn_ribbon	PF08792.5	gi|385803791|ref|YP_005840191.1|	-	0.075	12.5	2.7	6.8	6.2	0.2	2.6	3	0	0	3	3	3	0	A2L	zinc	ribbon	domain
Rubredoxin	PF00301.15	gi|385803791|ref|YP_005840191.1|	-	0.079	12.8	6.2	4.6	7.2	4.3	2.3	1	1	0	1	1	1	0	Rubredoxin
zf-tcix	PF14952.1	gi|385803791|ref|YP_005840191.1|	-	0.097	12.0	2.0	2.3	7.6	0.1	2.2	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
GFA	PF04828.9	gi|385803791|ref|YP_005840191.1|	-	0.099	12.5	1.1	0.41	10.6	0.7	1.8	1	1	0	1	1	1	0	Glutathione-dependent	formaldehyde-activating	enzyme
zf-TFIIB	PF13453.1	gi|385803791|ref|YP_005840191.1|	-	0.12	11.5	1.2	0.35	10.0	0.8	1.8	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
Prok-RING_1	PF14446.1	gi|385803791|ref|YP_005840191.1|	-	0.12	12.1	1.0	13	5.6	0.1	2.1	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
DNA_RNApol_7kD	PF03604.8	gi|385803791|ref|YP_005840191.1|	-	0.15	11.5	3.3	5.9	6.4	0.3	2.4	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
DZR	PF12773.2	gi|385803791|ref|YP_005840191.1|	-	0.16	11.7	2.0	0.43	10.4	1.4	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
DUF2225	PF09986.4	gi|385803791|ref|YP_005840191.1|	-	0.17	11.3	0.4	0.19	11.1	0.3	1.0	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2225)
Lar_restr_allev	PF14354.1	gi|385803791|ref|YP_005840191.1|	-	0.17	12.1	2.4	5.5	7.3	1.8	2.0	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
DUF164	PF02591.10	gi|385803791|ref|YP_005840191.1|	-	0.18	11.6	1.6	1.5	8.7	0.0	2.2	2	0	0	2	2	2	0	Putative	zinc	ribbon	domain
Ribosomal_S27e	PF01667.12	gi|385803791|ref|YP_005840191.1|	-	0.24	10.9	1.0	15	5.2	0.1	2.1	2	0	0	2	2	2	0	Ribosomal	protein	S27
zf-ISL3	PF14690.1	gi|385803791|ref|YP_005840191.1|	-	0.3	11.1	2.2	2.2	8.3	0.1	2.2	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-LITAF-like	PF10601.4	gi|385803791|ref|YP_005840191.1|	-	0.3	10.9	1.4	0.99	9.3	0.0	2.0	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
PHD	PF00628.24	gi|385803791|ref|YP_005840191.1|	-	0.34	10.6	3.9	3.2	7.5	2.7	2.0	1	1	0	1	1	1	0	PHD-finger
Elf1	PF05129.8	gi|385803791|ref|YP_005840191.1|	-	0.39	10.4	2.1	2.9	7.6	0.3	2.0	1	1	1	2	2	2	0	Transcription	elongation	factor	Elf1	like
DNA_ligase_ZBD	PF03119.11	gi|385803791|ref|YP_005840191.1|	-	0.43	10.3	0.1	0.43	10.3	0.1	2.3	3	0	0	3	3	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Zn_ribbon_recom	PF13408.1	gi|385803791|ref|YP_005840191.1|	-	0.56	10.5	2.2	11	6.4	0.1	2.4	1	1	1	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
zf-IS66	PF13005.2	gi|385803791|ref|YP_005840191.1|	-	2.4	8.1	4.7	15	5.6	0.4	2.0	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
SBP_bac_8	PF13416.1	gi|385803792|ref|YP_005840192.1|	-	1.7e-24	87.0	6.8	2.4e-24	86.5	4.7	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.1	gi|385803792|ref|YP_005840192.1|	-	0.0057	16.3	0.7	0.06	12.9	0.5	2.5	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.1	gi|385803792|ref|YP_005840192.1|	-	0.068	12.4	0.1	0.16	11.2	0.0	1.6	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.4	gi|385803792|ref|YP_005840192.1|	-	0.23	11.5	2.8	0.68	10.0	2.0	1.9	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.17	gi|385803793|ref|YP_005840193.1|	-	1.5e-17	63.7	17.0	1.5e-17	63.7	11.8	2.4	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF4064	PF13273.1	gi|385803793|ref|YP_005840193.1|	-	0.57	10.3	5.7	0.77	9.9	1.3	2.6	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF4064)
BPD_transp_1	PF00528.17	gi|385803794|ref|YP_005840194.1|	-	2.7e-13	49.8	20.3	2.7e-13	49.8	14.0	2.0	1	1	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.22	gi|385803795|ref|YP_005840195.1|	-	1.4e-32	112.8	0.0	3.1e-32	111.7	0.0	1.6	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.1	gi|385803795|ref|YP_005840195.1|	-	6.7e-09	36.1	0.0	0.00067	19.7	0.0	2.2	1	1	1	2	2	2	2	AAA	domain
TOBE_2	PF08402.5	gi|385803795|ref|YP_005840195.1|	-	2.9e-06	27.1	0.1	1.4e-05	25.0	0.0	2.2	2	0	0	2	2	2	1	TOBE	domain
DUF258	PF03193.11	gi|385803795|ref|YP_005840195.1|	-	0.00036	19.7	0.0	0.00065	18.9	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
SMC_N	PF02463.14	gi|385803795|ref|YP_005840195.1|	-	0.00058	19.1	0.2	0.0028	16.9	0.1	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_33	PF13671.1	gi|385803795|ref|YP_005840195.1|	-	0.0019	18.1	0.6	0.0044	16.9	0.4	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|385803795|ref|YP_005840195.1|	-	0.0022	18.1	0.0	0.007	16.5	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
Rad17	PF03215.10	gi|385803795|ref|YP_005840195.1|	-	0.0039	15.9	0.2	0.0075	15.0	0.1	1.4	1	1	0	1	1	1	1	Rad17	cell	cycle	checkpoint	protein
AAA_15	PF13175.1	gi|385803795|ref|YP_005840195.1|	-	0.0044	16.1	0.0	0.35	9.8	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|385803795|ref|YP_005840195.1|	-	0.0059	16.1	0.0	0.013	15.0	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|385803795|ref|YP_005840195.1|	-	0.008	16.1	0.0	0.018	15.0	0.0	1.5	1	0	0	1	1	1	1	AAA	ATPase	domain
TOBE	PF03459.12	gi|385803795|ref|YP_005840195.1|	-	0.013	15.5	0.0	0.15	12.1	0.0	2.5	2	0	0	2	2	2	0	TOBE	domain
AAA	PF00004.24	gi|385803795|ref|YP_005840195.1|	-	0.021	15.0	0.3	0.087	13.0	0.0	2.2	3	0	0	3	3	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_10	PF12846.2	gi|385803795|ref|YP_005840195.1|	-	0.022	14.2	0.1	0.04	13.3	0.1	1.5	1	1	0	1	1	1	0	AAA-like	domain
AAA_25	PF13481.1	gi|385803795|ref|YP_005840195.1|	-	0.023	14.0	0.6	0.13	11.6	0.4	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_14	PF13173.1	gi|385803795|ref|YP_005840195.1|	-	0.029	14.2	0.0	0.077	12.9	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
AAA_17	PF13207.1	gi|385803795|ref|YP_005840195.1|	-	0.042	14.6	0.0	0.084	13.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.16	gi|385803795|ref|YP_005840195.1|	-	0.065	12.3	0.0	0.14	11.2	0.0	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_5	PF07728.9	gi|385803795|ref|YP_005840195.1|	-	0.18	11.5	2.1	0.36	10.5	0.1	2.5	3	0	0	3	3	3	0	AAA	domain	(dynein-related	subfamily)
PAS_9	PF13426.1	gi|385803796|ref|YP_005840196.1|	-	2.8e-74	246.1	10.0	6.9e-14	52.0	0.0	7.6	7	0	0	7	7	7	7	PAS	domain
PAS_4	PF08448.5	gi|385803796|ref|YP_005840196.1|	-	1.2e-61	205.5	8.0	2.2e-10	40.5	0.1	7.6	8	0	0	8	8	7	6	PAS	fold
PAS	PF00989.19	gi|385803796|ref|YP_005840196.1|	-	4.2e-44	148.9	14.8	4.4e-11	42.5	0.3	8.7	8	1	2	10	10	10	5	PAS	fold
PAS_3	PF08447.6	gi|385803796|ref|YP_005840196.1|	-	6.4e-30	103.1	1.6	6.9e-10	38.8	0.0	7.4	7	0	0	7	7	7	4	PAS	fold
PAS_8	PF13188.1	gi|385803796|ref|YP_005840196.1|	-	2.2e-27	93.9	3.4	5.3e-07	29.2	0.0	7.2	7	0	0	7	7	7	5	PAS	domain
PAS_11	PF14598.1	gi|385803796|ref|YP_005840196.1|	-	6.9e-13	48.5	1.4	1.9e-05	24.5	0.0	5.9	6	0	0	6	6	6	3	PAS	domain
PAS_10	PF13596.1	gi|385803796|ref|YP_005840196.1|	-	8.7e-11	42.0	0.5	0.024	14.9	0.0	6.0	6	0	0	6	6	6	2	PAS	domain
GAF_3	PF13492.1	gi|385803796|ref|YP_005840196.1|	-	2.3e-05	24.4	0.0	9.9e-05	22.4	0.0	2.2	1	0	0	1	1	1	1	GAF	domain
GAF_2	PF13185.1	gi|385803796|ref|YP_005840196.1|	-	0.00033	21.1	0.2	0.0021	18.5	0.0	2.6	2	0	0	2	2	1	1	GAF	domain
PAS_7	PF12860.2	gi|385803796|ref|YP_005840196.1|	-	0.0012	18.8	13.2	0.59	10.1	0.0	7.2	6	3	2	8	8	8	1	PAS	fold
IQ-like	PF15157.1	gi|385803796|ref|YP_005840196.1|	-	0.0023	18.0	1.3	0.25	11.5	0.1	3.0	3	0	0	3	3	2	1	IQ-like
HATPase_c	PF02518.21	gi|385803796|ref|YP_005840196.1|	-	0.0025	17.5	0.0	0.0083	15.8	0.0	2.0	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|385803796|ref|YP_005840196.1|	-	0.0064	16.4	0.2	0.0064	16.4	0.2	3.4	4	0	0	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
DUF2984	PF11203.3	gi|385803796|ref|YP_005840196.1|	-	1	9.4	6.1	0.34	11.0	0.1	3.3	4	0	0	4	4	3	0	Protein	of	unknown	function	(DUF2984)
DUF615	PF04751.9	gi|385803796|ref|YP_005840196.1|	-	3.1	7.4	13.0	0.047	13.3	2.9	2.6	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF615)
Response_reg	PF00072.19	gi|385803797|ref|YP_005840197.1|	-	1.8e-14	53.6	0.3	2.8e-14	53.0	0.2	1.3	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HalX	PF08663.5	gi|385803797|ref|YP_005840197.1|	-	3.1e-13	49.4	5.4	3.1e-13	49.4	3.8	1.7	2	0	0	2	2	2	1	HalX	domain
DUF695	PF05117.7	gi|385803797|ref|YP_005840197.1|	-	0.039	13.8	0.9	0.38	10.6	0.2	2.2	1	1	1	2	2	2	0	Family	of	unknown	function	(DUF695)
Cytadhesin_P30	PF07271.6	gi|385803797|ref|YP_005840197.1|	-	0.61	9.3	2.6	0.9	8.7	1.8	1.2	1	0	0	1	1	1	0	Cytadhesin	P30/P32
Peptidase_S24	PF00717.18	gi|385803799|ref|YP_005840199.1|	-	6.9e-06	25.6	0.2	2e-05	24.1	0.0	1.8	2	0	0	2	2	2	1	Peptidase	S24-like
PKD	PF00801.15	gi|385803801|ref|YP_005840201.1|	-	2e-15	56.2	9.4	1.7e-07	30.8	0.0	3.6	3	0	0	3	3	3	2	PKD	domain
Y_Y_Y	PF07495.8	gi|385803801|ref|YP_005840201.1|	-	0.44	10.3	2.5	31	4.4	0.1	3.1	3	0	0	3	3	3	0	Y_Y_Y	domain
DUF1034	PF06280.7	gi|385803802|ref|YP_005840202.1|	-	0.074	13.4	5.5	0.051	13.9	2.5	1.8	2	0	0	2	2	2	0	Fn3-like	domain	(DUF1034)
ABC2_membrane_3	PF12698.2	gi|385803803|ref|YP_005840203.1|	-	0.012	14.7	6.0	0.015	14.3	4.1	1.1	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
CotE	PF10628.4	gi|385803803|ref|YP_005840203.1|	-	0.028	13.8	7.2	0.051	12.9	0.0	2.1	2	0	0	2	2	2	0	Outer	spore	coat	protein	E	(CotE)
CarboxypepD_reg	PF13620.1	gi|385803803|ref|YP_005840203.1|	-	7.3	6.7	7.9	2	8.5	0.3	3.2	4	0	0	4	4	4	0	Carboxypeptidase	regulatory-like	domain
Daxx	PF03344.10	gi|385803804|ref|YP_005840204.1|	-	0.0043	15.6	7.9	0.0066	15.0	5.5	1.4	1	0	0	1	1	1	1	Daxx	Family
Nop14	PF04147.7	gi|385803804|ref|YP_005840204.1|	-	0.19	9.6	14.3	0.28	9.0	9.9	1.2	1	0	0	1	1	1	0	Nop14-like	family
CDC45	PF02724.9	gi|385803804|ref|YP_005840204.1|	-	0.4	8.6	9.7	0.58	8.1	6.7	1.1	1	0	0	1	1	1	0	CDC45-like	protein
DUF2457	PF10446.4	gi|385803804|ref|YP_005840204.1|	-	6.4	5.3	26.1	13	4.4	18.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2457)
Spore_YpjB	PF09577.5	gi|385803806|ref|YP_005840206.1|	-	0.036	13.6	0.1	0.092	12.2	0.0	1.5	1	1	0	1	1	1	0	Sporulation	protein	YpjB	(SpoYpjB)
CRISPR_Cse2	PF09485.5	gi|385803806|ref|YP_005840206.1|	-	0.068	13.2	0.1	0.12	12.4	0.1	1.4	1	0	0	1	1	1	0	CRISPR-associated	protein	Cse2	(CRISPR_cse2)
Mrr_N	PF14338.1	gi|385803806|ref|YP_005840206.1|	-	0.13	12.3	0.4	0.26	11.3	0.1	1.6	2	0	0	2	2	2	0	Mrr	N-terminal	domain
Bacillus_HBL	PF05791.6	gi|385803808|ref|YP_005840208.1|	-	0.027	13.8	16.9	0.026	13.9	3.3	2.4	1	1	1	2	2	2	0	Bacillus	haemolytic	enterotoxin	(HBL)
Prok-RING_4	PF14447.1	gi|385803808|ref|YP_005840208.1|	-	0.098	12.2	1.1	0.23	11.0	0.8	1.6	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	4
PyrI_C	PF02748.10	gi|385803808|ref|YP_005840208.1|	-	0.2	11.0	1.2	2.2	7.7	0.2	2.5	1	1	1	2	2	2	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
Tox-ODYAM1	PF15642.1	gi|385803808|ref|YP_005840208.1|	-	1.4	7.4	10.6	2	7.0	7.3	1.3	1	0	0	1	1	1	0	Toxin	in	Odyssella	and	Amoebophilus
DUF3450	PF11932.3	gi|385803808|ref|YP_005840208.1|	-	1.5	8.0	27.2	0.21	10.8	5.2	3.2	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3450)
DUF2229	PF09989.4	gi|385803808|ref|YP_005840208.1|	-	1.8	7.9	6.9	0.56	9.6	2.1	2.1	2	1	1	3	3	3	0	CoA	enzyme	activase	uncharacterised	domain	(DUF2229)
GrpE	PF01025.14	gi|385803808|ref|YP_005840208.1|	-	1.9	8.0	16.4	1.2	8.6	9.3	2.2	1	1	0	1	1	1	0	GrpE
SAC3_GANP	PF03399.11	gi|385803808|ref|YP_005840208.1|	-	2	7.8	7.6	3.8	7.0	5.0	1.7	1	1	1	2	2	2	0	SAC3/GANP/Nin1/mts3/eIF-3	p25	family
Spc7	PF08317.6	gi|385803808|ref|YP_005840208.1|	-	2.5	6.6	23.7	0.34	9.5	11.3	2.3	1	1	1	2	2	2	0	Spc7	kinetochore	protein
Tropomyosin_1	PF12718.2	gi|385803808|ref|YP_005840208.1|	-	2.9	7.7	29.9	0.3	10.9	13.9	2.6	1	1	1	2	2	2	0	Tropomyosin	like
Occludin_ELL	PF07303.8	gi|385803808|ref|YP_005840208.1|	-	3.2	8.5	13.9	3.2	8.5	3.5	3.2	2	1	1	3	3	3	0	Occludin	homology	domain
CENP-Q	PF13094.1	gi|385803808|ref|YP_005840208.1|	-	3.2	7.7	24.7	0.15	12.0	11.8	2.5	1	1	1	2	2	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
DASH_Dad1	PF08649.5	gi|385803808|ref|YP_005840208.1|	-	3.3	7.4	13.5	0.7	9.6	0.8	4.0	4	1	1	5	5	5	0	DASH	complex	subunit	Dad1
Baculo_PEP_C	PF04513.7	gi|385803808|ref|YP_005840208.1|	-	5.1	6.9	14.4	0.78	9.5	4.6	3.0	2	1	1	3	3	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
TMPIT	PF07851.8	gi|385803808|ref|YP_005840208.1|	-	8.3	5.3	14.5	0.42	9.6	5.2	2.0	1	1	1	2	2	2	0	TMPIT-like	protein
DUF1664	PF07889.7	gi|385803808|ref|YP_005840208.1|	-	9.2	6.0	14.9	2.9	7.7	2.0	3.1	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1664)
DUF2762	PF10960.3	gi|385803808|ref|YP_005840208.1|	-	9.3	6.0	13.0	2.3	8.0	3.1	2.9	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2762)
PAS_9	PF13426.1	gi|385803809|ref|YP_005840209.1|	-	3.1e-21	75.6	0.1	1.6e-19	70.1	0.0	2.9	2	1	0	2	2	2	1	PAS	domain
PAS	PF00989.19	gi|385803809|ref|YP_005840209.1|	-	3.5e-17	62.2	0.4	7.7e-14	51.4	0.0	3.1	3	0	0	3	3	3	2	PAS	fold
PAS_4	PF08448.5	gi|385803809|ref|YP_005840209.1|	-	1.1e-09	38.2	0.2	9.1e-07	28.9	0.0	3.4	2	1	0	2	2	2	1	PAS	fold
HATPase_c	PF02518.21	gi|385803809|ref|YP_005840209.1|	-	2.1e-08	33.8	0.2	9.8e-08	31.7	0.1	2.1	1	1	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_8	PF13188.1	gi|385803809|ref|YP_005840209.1|	-	1.5e-07	31.0	0.1	4e-05	23.3	0.0	3.2	4	0	0	4	4	4	1	PAS	domain
PAS_3	PF08447.6	gi|385803809|ref|YP_005840209.1|	-	4.7e-05	23.4	0.0	0.0001	22.2	0.0	1.6	1	0	0	1	1	1	1	PAS	fold
HATPase_c_2	PF13581.1	gi|385803809|ref|YP_005840209.1|	-	0.00016	21.4	0.7	0.00052	19.8	0.5	1.9	1	1	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_7	PF12860.2	gi|385803809|ref|YP_005840209.1|	-	0.0094	15.9	0.7	2.2	8.3	0.1	3.5	2	1	1	3	3	3	1	PAS	fold
OST3_OST6	PF04756.8	gi|385803809|ref|YP_005840209.1|	-	0.051	13.1	0.3	0.12	11.9	0.2	1.5	1	0	0	1	1	1	0	OST3	/	OST6	family
HisKA	PF00512.20	gi|385803809|ref|YP_005840209.1|	-	0.082	12.9	0.4	0.26	11.3	0.2	1.9	1	0	0	1	1	1	0	His	Kinase	A	(phospho-acceptor)	domain
Methyltransf_18	PF12847.2	gi|385803813|ref|YP_005840213.1|	-	2.2e-06	28.2	0.0	7.9e-06	26.4	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|385803813|ref|YP_005840213.1|	-	5.1e-05	23.6	0.1	0.00053	20.4	0.1	2.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|385803813|ref|YP_005840213.1|	-	5.7e-05	22.8	0.0	0.00014	21.6	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|385803813|ref|YP_005840213.1|	-	0.00013	22.3	0.1	0.024	15.1	0.1	2.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|385803813|ref|YP_005840213.1|	-	0.0011	18.5	0.0	0.031	13.8	0.0	2.2	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|385803813|ref|YP_005840213.1|	-	0.0018	18.6	0.0	0.0034	17.7	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|385803813|ref|YP_005840213.1|	-	0.0053	16.7	0.9	0.023	14.7	0.1	2.4	2	2	0	2	2	2	1	Methyltransferase	domain
DUF4278	PF14105.1	gi|385803813|ref|YP_005840213.1|	-	0.14	12.1	0.6	0.64	10.0	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4278)
PTPS	PF01242.14	gi|385803814|ref|YP_005840214.1|	-	5.1e-20	71.3	0.0	5.7e-20	71.2	0.0	1.0	1	0	0	1	1	1	1	6-pyruvoyl	tetrahydropterin	synthase
ADH_zinc_N	PF00107.21	gi|385803815|ref|YP_005840215.1|	-	5.1e-13	48.6	0.0	1.4e-12	47.3	0.0	1.7	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
GGDN	PF05165.7	gi|385803816|ref|YP_005840216.1|	-	9.5e-90	299.9	0.2	1.3e-89	299.5	0.2	1.0	1	0	0	1	1	1	1	GGDN	family
Sulfatase	PF00884.18	gi|385803817|ref|YP_005840217.1|	-	3.4e-23	82.3	1.6	5.3e-23	81.6	1.1	1.3	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.17	gi|385803817|ref|YP_005840217.1|	-	0.013	14.7	1.3	0.024	13.9	0.1	2.0	2	0	0	2	2	2	0	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Cpl-7	PF08230.6	gi|385803817|ref|YP_005840217.1|	-	0.031	14.0	0.0	1.4	8.6	0.0	2.5	2	0	0	2	2	2	0	Cpl-7	lysozyme	C-terminal	domain
zf-CDGSH	PF09360.5	gi|385803818|ref|YP_005840218.1|	-	2.6e-14	52.7	0.2	4e-14	52.1	0.2	1.3	1	0	0	1	1	1	1	Iron-binding	zinc	finger	CDGSH	type
ArsA_ATPase	PF02374.10	gi|385803819|ref|YP_005840219.1|	-	4.8e-77	258.9	0.0	5.5e-77	258.8	0.0	1.0	1	0	0	1	1	1	1	Anion-transporting	ATPase
CbiA	PF01656.18	gi|385803819|ref|YP_005840219.1|	-	5.8e-09	35.6	0.1	2.8e-08	33.4	0.1	2.1	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|385803819|ref|YP_005840219.1|	-	3.5e-05	23.7	0.2	0.0015	18.5	0.0	2.8	2	1	1	3	3	3	1	AAA	domain
Fer4_NifH	PF00142.13	gi|385803819|ref|YP_005840219.1|	-	0.00028	20.1	0.1	0.00061	19.0	0.0	1.5	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_25	PF13481.1	gi|385803819|ref|YP_005840219.1|	-	0.01	15.2	0.6	0.01	15.2	0.4	2.2	2	1	0	2	2	2	0	AAA	domain
YhjQ	PF06564.7	gi|385803819|ref|YP_005840219.1|	-	0.017	14.5	0.0	0.028	13.7	0.0	1.3	1	0	0	1	1	1	0	YhjQ	protein
PhoH	PF02562.11	gi|385803819|ref|YP_005840219.1|	-	0.019	14.1	0.0	0.036	13.3	0.0	1.4	1	0	0	1	1	1	0	PhoH-like	protein
KaiC	PF06745.8	gi|385803819|ref|YP_005840219.1|	-	0.032	13.3	0.0	0.57	9.2	0.0	2.2	1	1	1	2	2	2	0	KaiC
AAA_10	PF12846.2	gi|385803819|ref|YP_005840219.1|	-	0.041	13.3	0.1	0.067	12.6	0.1	1.5	1	1	0	1	1	1	0	AAA-like	domain
SRP54	PF00448.17	gi|385803819|ref|YP_005840219.1|	-	0.08	12.3	0.7	0.44	9.9	0.1	2.1	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
DPRP	PF04244.8	gi|385803820|ref|YP_005840220.1|	-	2.5e-57	193.9	0.0	8e-57	192.3	0.0	1.8	2	0	0	2	2	2	1	Deoxyribodipyrimidine	photo-lyase-related	protein
FAD_binding_7	PF03441.9	gi|385803820|ref|YP_005840220.1|	-	1.9e-09	37.1	0.4	9.5e-09	34.8	0.1	2.0	2	0	0	2	2	2	1	FAD	binding	domain	of	DNA	photolyase
RNase_H	PF00075.19	gi|385803821|ref|YP_005840221.1|	-	2.9e-11	43.8	0.0	4e-11	43.3	0.0	1.2	1	0	0	1	1	1	1	RNase	H
RVT_3	PF13456.1	gi|385803821|ref|YP_005840221.1|	-	2e-06	27.4	0.0	3.1e-06	26.8	0.0	1.3	1	0	0	1	1	1	1	Reverse	transcriptase-like
TrmB	PF01978.14	gi|385803822|ref|YP_005840222.1|	-	8.2e-09	35.0	0.0	1.2e-08	34.5	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|385803822|ref|YP_005840222.1|	-	0.00018	21.1	0.5	0.00066	19.2	0.1	1.9	2	0	0	2	2	2	1	MarR	family
HTH_5	PF01022.15	gi|385803822|ref|YP_005840222.1|	-	0.00088	18.8	0.2	0.0033	17.0	0.1	2.1	2	1	1	3	3	3	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.1	gi|385803822|ref|YP_005840222.1|	-	0.00091	18.5	0.1	0.0042	16.4	0.0	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
TFIIE_alpha	PF02002.12	gi|385803822|ref|YP_005840222.1|	-	0.0031	17.0	0.0	0.0051	16.2	0.0	1.4	1	1	0	1	1	1	1	TFIIE	alpha	subunit
Desulfoferrod_N	PF06397.7	gi|385803822|ref|YP_005840222.1|	-	0.0076	15.6	3.5	0.021	14.1	2.4	1.8	1	1	0	1	1	1	1	Desulfoferrodoxin,	N-terminal	domain
MarR	PF01047.17	gi|385803822|ref|YP_005840222.1|	-	0.0089	15.7	0.1	0.025	14.2	0.0	1.8	2	0	0	2	2	2	1	MarR	family
HTH_20	PF12840.2	gi|385803822|ref|YP_005840222.1|	-	0.0098	15.6	0.3	0.022	14.5	0.2	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|385803822|ref|YP_005840222.1|	-	0.016	14.7	0.0	0.031	13.8	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Rrf2	PF02082.15	gi|385803822|ref|YP_005840222.1|	-	0.053	13.6	0.0	0.1	12.7	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
DUF2576	PF10845.3	gi|385803822|ref|YP_005840222.1|	-	0.089	11.9	1.3	0.45	9.7	0.0	2.5	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2576)
HTH_29	PF13551.1	gi|385803822|ref|YP_005840222.1|	-	0.093	12.8	0.2	0.17	12.0	0.1	1.5	1	1	0	1	1	1	0	Winged	helix-turn	helix
zf-LITAF-like	PF10601.4	gi|385803823|ref|YP_005840223.1|	-	0.16	11.8	0.9	4.3	7.2	0.0	2.2	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
GATA	PF00320.22	gi|385803823|ref|YP_005840223.1|	-	0.43	9.9	2.0	0.76	9.1	0.1	2.0	2	0	0	2	2	2	0	GATA	zinc	finger
zf-piccolo	PF05715.8	gi|385803823|ref|YP_005840223.1|	-	0.65	10.0	3.2	1.3	9.0	2.2	1.8	1	1	0	1	1	1	0	Piccolo	Zn-finger
DUF1576	PF07613.6	gi|385803824|ref|YP_005840224.1|	-	2.1	7.8	9.6	4.2	6.8	3.3	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1576)
MFS_1	PF07690.11	gi|385803825|ref|YP_005840225.1|	-	1.5e-33	115.9	65.8	6.6e-29	100.7	26.7	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
EamA	PF00892.15	gi|385803826|ref|YP_005840226.1|	-	2.6e-25	88.9	31.7	2.2e-14	53.6	7.1	2.3	2	1	0	2	2	2	2	EamA-like	transporter	family
EmrE	PF13536.1	gi|385803826|ref|YP_005840226.1|	-	4.2e-08	33.3	39.9	3.1e-07	30.5	7.6	3.4	1	1	2	3	3	3	3	Multidrug	resistance	efflux	transporter
UPF0542	PF15086.1	gi|385803826|ref|YP_005840226.1|	-	0.041	13.5	0.4	0.11	12.2	0.3	1.8	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0542
FAD_binding_2	PF00890.19	gi|385803827|ref|YP_005840227.1|	-	1.9e-89	300.4	6.7	2.5e-89	300.0	4.7	1.2	1	0	0	1	1	1	1	FAD	binding	domain
Succ_DH_flav_C	PF02910.15	gi|385803827|ref|YP_005840227.1|	-	6e-20	71.4	0.0	1.5e-19	70.1	0.0	1.7	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
Pyr_redox_2	PF07992.9	gi|385803827|ref|YP_005840227.1|	-	7.3e-08	32.5	2.4	3.1e-06	27.2	1.6	2.9	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|385803827|ref|YP_005840227.1|	-	1.9e-07	30.3	4.0	6.3e-07	28.6	2.8	2.0	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|385803827|ref|YP_005840227.1|	-	9.2e-05	21.6	1.0	0.0002	20.5	0.3	1.8	2	0	0	2	2	2	1	FAD	binding	domain
HI0933_like	PF03486.9	gi|385803827|ref|YP_005840227.1|	-	9.3e-05	21.0	1.5	0.098	11.1	0.0	2.8	3	0	0	3	3	3	2	HI0933-like	protein
GIDA	PF01134.17	gi|385803827|ref|YP_005840227.1|	-	0.0045	15.9	1.2	0.036	12.9	0.8	2.1	1	1	0	1	1	1	1	Glucose	inhibited	division	protein	A
ThiF	PF00899.16	gi|385803827|ref|YP_005840227.1|	-	0.039	13.7	0.4	0.09	12.6	0.3	1.6	1	0	0	1	1	1	0	ThiF	family
Pyr_redox_3	PF13738.1	gi|385803827|ref|YP_005840227.1|	-	0.044	13.8	0.1	3.4	7.6	0.1	2.3	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Shikimate_DH	PF01488.15	gi|385803827|ref|YP_005840227.1|	-	0.087	12.9	0.0	0.2	11.7	0.0	1.5	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
ApbA	PF02558.11	gi|385803827|ref|YP_005840227.1|	-	0.13	11.6	0.6	0.24	10.8	0.4	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
DUF457	PF04307.9	gi|385803828|ref|YP_005840228.1|	-	1.6e-14	53.5	11.3	2e-14	53.2	7.8	1.1	1	0	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
DUF3976	PF13121.1	gi|385803828|ref|YP_005840228.1|	-	0.027	14.3	0.7	0.027	14.3	0.5	3.0	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF3976)
PDGLE	PF13190.1	gi|385803828|ref|YP_005840228.1|	-	0.27	10.9	8.9	0.74	9.5	0.1	3.5	2	2	2	4	4	4	0	PDGLE	domain
YrvL	PF14184.1	gi|385803828|ref|YP_005840228.1|	-	0.33	10.7	4.6	0.11	12.3	0.4	2.0	2	0	0	2	2	2	0	Regulatory	protein	YrvL
zf-RING_3	PF14369.1	gi|385803830|ref|YP_005840230.1|	-	0.00041	20.2	0.7	0.00054	19.8	0.5	1.1	1	0	0	1	1	1	1	zinc-finger
Zn-ribbon_8	PF09723.5	gi|385803830|ref|YP_005840230.1|	-	0.094	12.6	0.7	0.14	12.1	0.5	1.3	1	1	0	1	1	1	0	Zinc	ribbon	domain
ZZ	PF00569.12	gi|385803830|ref|YP_005840230.1|	-	0.12	11.9	0.9	0.98	9.0	0.0	2.0	2	0	0	2	2	2	0	Zinc	finger,	ZZ	type
zf-C2H2	PF00096.21	gi|385803830|ref|YP_005840230.1|	-	0.12	12.7	1.0	2.6	8.5	0.0	2.1	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
DZR	PF12773.2	gi|385803830|ref|YP_005840230.1|	-	0.12	12.2	1.4	0.18	11.6	1.0	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-TFIIB	PF13453.1	gi|385803830|ref|YP_005840230.1|	-	0.14	11.4	0.8	0.16	11.1	0.5	1.2	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
zinc_ribbon_5	PF13719.1	gi|385803830|ref|YP_005840230.1|	-	2.5	7.7	6.5	1.7	8.3	0.9	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|385803830|ref|YP_005840230.1|	-	2.8	7.7	6.8	1.7	8.3	0.9	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
DAO	PF01266.19	gi|385803831|ref|YP_005840231.1|	-	7.5e-09	34.9	1.1	8.4e-06	24.9	1.0	2.2	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|385803831|ref|YP_005840231.1|	-	1.1e-08	35.1	0.2	1e-07	32.0	0.0	1.9	1	1	1	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|385803831|ref|YP_005840231.1|	-	4.7e-08	32.3	2.2	7e-08	31.7	0.9	1.7	1	1	1	2	2	2	1	FAD	binding	domain
GIDA	PF01134.17	gi|385803831|ref|YP_005840231.1|	-	5.7e-08	32.0	3.4	2.4e-06	26.6	0.1	2.9	1	1	1	3	3	3	1	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.9	gi|385803831|ref|YP_005840231.1|	-	2.5e-05	22.9	0.3	0.00015	20.3	0.1	1.9	2	0	0	2	2	2	1	HI0933-like	protein
FAD_oxidored	PF12831.2	gi|385803831|ref|YP_005840231.1|	-	4.5e-05	22.7	0.2	6.6e-05	22.1	0.1	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.1	gi|385803831|ref|YP_005840231.1|	-	9.7e-05	22.5	3.0	0.22	11.5	1.0	2.1	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|385803831|ref|YP_005840231.1|	-	0.00021	20.4	0.1	0.00032	19.8	0.1	1.3	1	0	0	1	1	1	1	FAD	binding	domain
3HCDH_N	PF02737.13	gi|385803831|ref|YP_005840231.1|	-	0.00035	20.2	0.5	0.0008	19.1	0.4	1.6	1	1	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_8	PF13450.1	gi|385803831|ref|YP_005840231.1|	-	0.00048	20.0	0.1	0.0011	18.9	0.1	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.22	gi|385803831|ref|YP_005840231.1|	-	0.00068	19.9	0.7	0.0015	18.9	0.5	1.6	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.12	gi|385803831|ref|YP_005840231.1|	-	0.002	17.2	0.4	0.0084	15.2	0.1	1.9	2	0	0	2	2	2	1	Thi4	family
AlaDh_PNT_C	PF01262.16	gi|385803831|ref|YP_005840231.1|	-	0.0024	17.4	2.1	0.0036	16.8	1.1	1.8	1	1	1	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_7	PF13241.1	gi|385803831|ref|YP_005840231.1|	-	0.063	13.5	0.0	0.13	12.5	0.0	1.5	1	0	0	1	1	1	0	Putative	NAD(P)-binding
Lycopene_cycl	PF05834.7	gi|385803831|ref|YP_005840231.1|	-	0.069	12.0	1.4	0.13	11.1	0.6	1.7	1	1	1	2	2	2	0	Lycopene	cyclase	protein
Pico_P1A	PF02226.11	gi|385803832|ref|YP_005840232.1|	-	0.018	14.7	0.1	0.032	13.9	0.1	1.3	1	0	0	1	1	1	0	Picornavirus	coat	protein	(VP4)
BALF1	PF06861.6	gi|385803832|ref|YP_005840232.1|	-	0.03	13.7	0.0	0.046	13.1	0.0	1.3	1	0	0	1	1	1	0	BALF1	protein
TetR_N	PF00440.18	gi|385803832|ref|YP_005840232.1|	-	0.16	11.6	0.1	3.5	7.3	0.0	2.6	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	tetR	family
adh_short	PF00106.20	gi|385803833|ref|YP_005840233.1|	-	1.2e-36	126.1	2.6	1.2e-36	126.1	1.8	1.7	2	0	0	2	2	2	1	short	chain	dehydrogenase
KR	PF08659.5	gi|385803833|ref|YP_005840233.1|	-	3.6e-15	56.0	0.9	5.5e-15	55.4	0.6	1.2	1	0	0	1	1	1	1	KR	domain
adh_short_C2	PF13561.1	gi|385803833|ref|YP_005840233.1|	-	2.4e-14	53.7	0.0	3.4e-14	53.1	0.0	1.2	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
Epimerase	PF01370.16	gi|385803833|ref|YP_005840233.1|	-	6e-05	22.5	0.2	0.00015	21.2	0.1	1.7	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.1	gi|385803833|ref|YP_005840233.1|	-	7e-05	22.9	2.9	0.00011	22.2	2.0	1.5	1	1	0	1	1	1	1	NADH(P)-binding
Polysacc_synt_2	PF02719.10	gi|385803833|ref|YP_005840233.1|	-	0.0011	17.8	0.0	0.0015	17.4	0.0	1.2	1	0	0	1	1	1	1	Polysaccharide	biosynthesis	protein
F420_oxidored	PF03807.12	gi|385803833|ref|YP_005840233.1|	-	0.0018	18.6	0.4	0.0037	17.6	0.3	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
ApbA	PF02558.11	gi|385803833|ref|YP_005840233.1|	-	0.0098	15.3	0.0	0.017	14.6	0.0	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
3HCDH_N	PF02737.13	gi|385803833|ref|YP_005840233.1|	-	0.014	15.0	3.7	0.029	14.0	1.1	2.3	2	1	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Eno-Rase_NADH_b	PF12242.3	gi|385803833|ref|YP_005840233.1|	-	0.032	14.0	0.2	0.095	12.5	0.1	1.8	1	0	0	1	1	1	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
NAD_Gly3P_dh_N	PF01210.18	gi|385803833|ref|YP_005840233.1|	-	0.036	13.8	0.1	0.064	12.9	0.1	1.4	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
NAD_binding_7	PF13241.1	gi|385803833|ref|YP_005840233.1|	-	0.039	14.2	0.6	0.078	13.2	0.1	1.7	2	0	0	2	2	2	0	Putative	NAD(P)-binding
2-Hacid_dh_C	PF02826.14	gi|385803833|ref|YP_005840233.1|	-	0.045	12.9	0.0	0.087	11.9	0.0	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
CoA_binding_2	PF13380.1	gi|385803833|ref|YP_005840233.1|	-	0.057	13.5	0.3	1.3	9.2	0.2	2.5	3	0	0	3	3	3	0	CoA	binding	domain
MR_MLE_C	PF13378.1	gi|385803833|ref|YP_005840233.1|	-	0.092	12.7	0.2	0.45	10.5	0.0	2.1	1	1	1	2	2	2	0	Enolase	C-terminal	domain-like
Shikimate_DH	PF01488.15	gi|385803833|ref|YP_005840233.1|	-	0.095	12.8	0.1	0.19	11.8	0.1	1.6	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
Bmp	PF02608.9	gi|385803834|ref|YP_005840234.1|	-	7.3e-57	192.4	2.9	1.1e-56	191.8	2.0	1.2	1	0	0	1	1	1	1	Basic	membrane	protein
OMP_b-brl_2	PF13568.1	gi|385803834|ref|YP_005840234.1|	-	0.0016	18.3	0.1	0.0032	17.3	0.0	1.5	1	0	0	1	1	1	1	Outer	membrane	protein	beta-barrel	domain
Peripla_BP_4	PF13407.1	gi|385803834|ref|YP_005840234.1|	-	0.0017	17.7	6.2	0.0036	16.7	4.3	1.5	1	1	0	1	1	1	1	Periplasmic	binding	protein	domain
TAT_signal	PF10518.4	gi|385803834|ref|YP_005840234.1|	-	0.11	12.5	0.6	0.11	12.5	0.4	2.4	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_2	PF02653.11	gi|385803836|ref|YP_005840236.1|	-	1.6e-45	155.1	29.9	1.6e-45	155.1	20.7	2.0	1	1	1	2	2	2	2	Branched-chain	amino	acid	transport	system	/	permease	component
DUF1378	PF07125.6	gi|385803836|ref|YP_005840236.1|	-	0.072	13.0	0.7	0.22	11.4	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1378)
BPD_transp_2	PF02653.11	gi|385803837|ref|YP_005840237.1|	-	1.2e-38	132.6	35.8	1.2e-38	132.6	24.8	1.5	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
DUF3093	PF11292.3	gi|385803837|ref|YP_005840237.1|	-	3.4	7.4	7.8	5.6	6.7	0.0	3.0	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3093)
Proteasome	PF00227.21	gi|385803838|ref|YP_005840238.1|	-	7.7e-52	175.3	0.0	9.7e-52	175.0	0.0	1.1	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome_A_N	PF10584.4	gi|385803838|ref|YP_005840238.1|	-	1.7e-12	46.3	0.2	2.8e-12	45.6	0.1	1.4	1	0	0	1	1	1	1	Proteasome	subunit	A	N-terminal	signature
DUF4169	PF13770.1	gi|385803838|ref|YP_005840238.1|	-	0.022	14.7	0.1	0.044	13.7	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4169)
DHFR_1	PF00186.14	gi|385803839|ref|YP_005840239.1|	-	4.9e-47	159.4	0.0	6.1e-47	159.1	0.0	1.1	1	0	0	1	1	1	1	Dihydrofolate	reductase
Thymidylat_synt	PF00303.14	gi|385803840|ref|YP_005840240.1|	-	1.6e-92	309.3	0.0	1.8e-92	309.1	0.0	1.0	1	0	0	1	1	1	1	Thymidylate	synthase
Lactamase_B	PF00753.22	gi|385803841|ref|YP_005840241.1|	-	1.2e-20	73.9	4.3	1.5e-20	73.6	3.0	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|385803841|ref|YP_005840241.1|	-	0.00059	19.4	2.1	0.00089	18.8	1.5	1.5	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.1	gi|385803841|ref|YP_005840241.1|	-	0.13	11.9	1.7	0.3	10.7	1.2	1.8	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
zf-CSL	PF05207.8	gi|385803843|ref|YP_005840243.1|	-	0.041	13.4	0.4	0.054	13.0	0.3	1.2	1	0	0	1	1	1	0	CSL	zinc	finger
cEGF	PF12662.2	gi|385803843|ref|YP_005840243.1|	-	0.15	11.7	1.1	0.22	11.2	0.7	1.5	1	1	0	1	1	1	0	Complement	Clr-like	EGF-like
Tnp_DNA_bind	PF14706.1	gi|385803844|ref|YP_005840244.1|	-	1e-24	85.9	0.0	1.8e-24	85.2	0.0	1.4	1	0	0	1	1	1	1	Transposase	DNA-binding
DDE_Tnp_1	PF01609.16	gi|385803844|ref|YP_005840244.1|	-	9.8e-06	25.2	0.1	2.3e-05	24.0	0.1	1.6	2	0	0	2	2	2	1	Transposase	DDE	domain
Dimer_Tnp_Tn5	PF02281.11	gi|385803844|ref|YP_005840244.1|	-	0.063	13.3	0.1	0.17	12.0	0.0	1.7	2	0	0	2	2	2	0	Transposase	Tn5	dimerisation	domain
Sod_Fe_C	PF02777.13	gi|385803845|ref|YP_005840245.1|	-	1.9e-36	124.1	0.1	3.1e-36	123.4	0.1	1.3	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	C-terminal	domain
Sod_Fe_N	PF00081.17	gi|385803845|ref|YP_005840245.1|	-	6.5e-29	100.0	0.8	1e-28	99.4	0.5	1.3	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	alpha-hairpin	domain
DUF2237	PF09996.4	gi|385803846|ref|YP_005840246.1|	-	5.8e-51	170.8	0.0	6.8e-51	170.6	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2237)
FAD_binding_7	PF03441.9	gi|385803847|ref|YP_005840247.1|	-	1.2e-101	339.5	0.7	1.6e-101	339.1	0.5	1.2	1	0	0	1	1	1	1	FAD	binding	domain	of	DNA	photolyase
DNA_photolyase	PF00875.13	gi|385803847|ref|YP_005840247.1|	-	2.1e-44	151.2	0.1	1.5e-43	148.4	0.0	2.1	2	0	0	2	2	2	1	DNA	photolyase
MAF_flag10	PF01973.13	gi|385803848|ref|YP_005840248.1|	-	4.8e-26	91.2	0.0	6.4e-26	90.8	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF115
Pterin_bind	PF00809.17	gi|385803849|ref|YP_005840249.1|	-	3.4e-30	105.0	0.0	6.5e-30	104.0	0.0	1.5	1	0	0	1	1	1	1	Pterin	binding	enzyme
SpoU_methylase	PF00588.14	gi|385803851|ref|YP_005840251.1|	-	4.2e-30	104.4	0.0	6.8e-30	103.8	0.0	1.3	1	0	0	1	1	1	1	SpoU	rRNA	Methylase	family
DUF1675	PF07897.6	gi|385803851|ref|YP_005840251.1|	-	0.016	15.1	0.6	0.021	14.7	0.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1675)
GatB_N	PF02934.10	gi|385803852|ref|YP_005840252.1|	-	2.5e-73	246.4	0.0	3.4e-73	246.0	0.0	1.1	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.13	gi|385803852|ref|YP_005840252.1|	-	7.5e-21	74.3	0.0	2e-20	72.9	0.0	1.8	2	0	0	2	2	2	1	GatB	domain
GAD	PF02938.9	gi|385803852|ref|YP_005840252.1|	-	7.9e-13	48.3	0.0	1.7e-12	47.3	0.0	1.6	1	0	0	1	1	1	1	GAD	domain
YqeY	PF09424.5	gi|385803852|ref|YP_005840252.1|	-	0.0029	17.4	0.4	0.0086	15.9	0.3	1.8	1	0	0	1	1	1	1	Yqey-like	protein
Zn-ribbon_8	PF09723.5	gi|385803853|ref|YP_005840253.1|	-	0.0023	17.8	1.9	0.0035	17.2	1.3	1.3	1	0	0	1	1	1	1	Zinc	ribbon	domain
zinc_ribbon_2	PF13240.1	gi|385803853|ref|YP_005840253.1|	-	0.0029	17.0	0.2	0.005	16.2	0.2	1.5	1	1	0	1	1	1	1	zinc-ribbon	domain
RNA_POL_M_15KD	PF02150.11	gi|385803853|ref|YP_005840253.1|	-	0.0037	16.9	1.9	0.016	14.8	0.1	2.1	2	0	0	2	2	2	1	RNA	polymerases	M/15	Kd	subunit
zf-C2H2_6	PF13912.1	gi|385803853|ref|YP_005840253.1|	-	0.004	17.0	2.5	0.013	15.3	0.1	2.1	2	0	0	2	2	2	1	C2H2-type	zinc	finger
DZR	PF12773.2	gi|385803853|ref|YP_005840253.1|	-	0.015	15.0	2.2	0.021	14.6	1.5	1.3	1	1	0	1	1	1	0	Double	zinc	ribbon
HypA	PF01155.14	gi|385803853|ref|YP_005840253.1|	-	0.017	14.8	0.3	0.017	14.7	0.2	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zinc_ribbon_5	PF13719.1	gi|385803853|ref|YP_005840253.1|	-	0.026	14.0	0.4	0.64	9.6	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
C1_4	PF07975.7	gi|385803853|ref|YP_005840253.1|	-	0.028	14.4	0.3	0.037	14.0	0.2	1.2	1	0	0	1	1	1	0	TFIIH	C1-like	domain
zinc_ribbon_4	PF13717.1	gi|385803853|ref|YP_005840253.1|	-	0.029	14.0	0.5	0.78	9.4	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|385803853|ref|YP_005840253.1|	-	0.031	13.4	2.0	3.1	7.1	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
RNHCP	PF12647.2	gi|385803853|ref|YP_005840253.1|	-	0.047	13.5	0.1	0.053	13.3	0.1	1.1	1	0	0	1	1	1	0	RNHCP	domain
C1_3	PF07649.7	gi|385803853|ref|YP_005840253.1|	-	0.056	13.5	1.5	0.13	12.2	0.1	2.0	2	0	0	2	2	2	0	C1-like	domain
zf-HIT	PF04438.11	gi|385803853|ref|YP_005840253.1|	-	0.072	12.7	0.3	6.9	6.4	0.0	2.2	2	0	0	2	2	2	0	HIT	zinc	finger
A2L_zn_ribbon	PF08792.5	gi|385803853|ref|YP_005840253.1|	-	0.076	12.4	2.1	1	8.8	0.1	2.6	3	0	0	3	3	3	0	A2L	zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|385803853|ref|YP_005840253.1|	-	0.095	12.5	4.2	2.1	8.2	0.3	2.2	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
DUF2296	PF10058.4	gi|385803853|ref|YP_005840253.1|	-	0.1	12.3	0.5	0.16	11.7	0.3	1.3	1	1	0	1	1	1	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
zf-NADH-PPase	PF09297.6	gi|385803853|ref|YP_005840253.1|	-	0.1	12.1	2.9	0.18	11.3	0.1	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Rubredoxin	PF00301.15	gi|385803853|ref|YP_005840253.1|	-	0.12	12.2	3.3	2	8.3	2.3	2.1	1	1	0	1	1	1	0	Rubredoxin
DUF1610	PF07754.6	gi|385803853|ref|YP_005840253.1|	-	0.15	12.2	2.0	0.98	9.5	0.2	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
PhnA_Zn_Ribbon	PF08274.7	gi|385803853|ref|YP_005840253.1|	-	0.18	11.6	1.6	0.97	9.2	1.3	1.9	1	1	1	2	2	2	0	PhnA	Zinc-Ribbon
zf-C2H2_3	PF13878.1	gi|385803853|ref|YP_005840253.1|	-	0.31	10.6	1.7	0.43	10.1	0.0	1.9	1	1	1	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
DNA_RNApol_7kD	PF03604.8	gi|385803853|ref|YP_005840253.1|	-	0.51	9.8	2.8	6	6.4	0.2	2.1	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-RING_3	PF14369.1	gi|385803853|ref|YP_005840253.1|	-	0.69	9.9	3.7	3.1	7.8	0.4	2.1	1	1	1	2	2	2	0	zinc-finger
PHD	PF00628.24	gi|385803853|ref|YP_005840253.1|	-	0.73	9.5	3.5	7.1	6.4	2.5	2.0	1	1	0	1	1	1	0	PHD-finger
RRN7	PF11781.3	gi|385803853|ref|YP_005840253.1|	-	2.1	7.9	8.1	8.5	5.9	0.1	2.7	2	1	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
Lyase_1	PF00206.15	gi|385803854|ref|YP_005840254.1|	-	2.5e-105	352.0	0.1	3.2e-105	351.7	0.1	1.1	1	0	0	1	1	1	1	Lyase
FumaraseC_C	PF10415.4	gi|385803854|ref|YP_005840254.1|	-	4.2e-23	81.1	0.1	1.4e-22	79.5	0.1	2.0	1	0	0	1	1	1	1	Fumarase	C	C-terminus
LacAB_rpiB	PF02502.13	gi|385803854|ref|YP_005840254.1|	-	0.045	13.4	0.2	0.13	11.9	0.1	1.7	1	0	0	1	1	1	0	Ribose/Galactose	Isomerase
BolA	PF01722.13	gi|385803855|ref|YP_005840255.1|	-	9.8e-22	76.7	0.0	1.1e-21	76.5	0.0	1.1	1	0	0	1	1	1	1	BolA-like	protein
Aph-1	PF06105.7	gi|385803856|ref|YP_005840256.1|	-	0.02	14.1	0.1	0.02	14.1	0.0	1.8	1	1	1	2	2	2	0	Aph-1	protein
BPD_transp_1	PF00528.17	gi|385803857|ref|YP_005840257.1|	-	2.8e-33	114.9	7.7	2.8e-33	114.9	5.4	1.9	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.2	gi|385803857|ref|YP_005840257.1|	-	0.0047	16.2	2.5	0.0047	16.2	1.7	2.5	2	0	0	2	2	2	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
BPD_transp_1	PF00528.17	gi|385803858|ref|YP_005840258.1|	-	1.3e-36	125.8	13.1	2.1e-36	125.1	9.1	1.3	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_5	PF00496.17	gi|385803859|ref|YP_005840259.1|	-	2.6e-75	253.5	1.2	3.8e-75	253.0	0.9	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.4	gi|385803859|ref|YP_005840259.1|	-	0.00015	21.5	2.3	0.00037	20.2	1.6	1.7	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ABC_tran	PF00005.22	gi|385803860|ref|YP_005840260.1|	-	9.7e-58	194.3	0.0	1.4e-29	103.1	0.0	2.6	2	0	0	2	2	2	2	ABC	transporter
oligo_HPY	PF08352.7	gi|385803860|ref|YP_005840260.1|	-	2.5e-41	139.8	3.3	7.5e-22	77.4	0.1	2.6	2	0	0	2	2	2	2	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|385803860|ref|YP_005840260.1|	-	1.1e-15	58.3	0.2	3.1e-07	30.6	0.0	3.9	3	1	0	4	4	4	2	AAA	domain
SMC_N	PF02463.14	gi|385803860|ref|YP_005840260.1|	-	5.9e-11	42.0	0.0	2.1e-06	27.1	0.0	3.1	3	0	0	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|385803860|ref|YP_005840260.1|	-	7.4e-06	25.3	2.0	0.059	12.9	0.1	2.5	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|385803860|ref|YP_005840260.1|	-	1.7e-05	24.8	0.6	0.17	11.8	0.1	2.9	2	1	0	2	2	2	2	AAA	ATPase	domain
AAA_25	PF13481.1	gi|385803860|ref|YP_005840260.1|	-	3.3e-05	23.3	0.1	1	8.7	0.0	4.1	4	0	0	4	4	4	2	AAA	domain
AAA_22	PF13401.1	gi|385803860|ref|YP_005840260.1|	-	3.7e-05	23.8	5.9	0.0073	16.4	0.3	4.3	3	2	0	3	3	3	1	AAA	domain
ATP-synt_ab	PF00006.20	gi|385803860|ref|YP_005840260.1|	-	5.2e-05	22.8	0.2	0.025	14.0	0.0	2.8	2	1	0	2	2	2	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_10	PF12846.2	gi|385803860|ref|YP_005840260.1|	-	0.0001	21.8	0.0	0.035	13.5	0.0	2.8	2	0	0	2	2	2	1	AAA-like	domain
AAA_15	PF13175.1	gi|385803860|ref|YP_005840260.1|	-	0.00037	19.6	0.4	0.21	10.5	0.0	2.8	3	0	0	3	3	3	2	AAA	ATPase	domain
AAA_5	PF07728.9	gi|385803860|ref|YP_005840260.1|	-	0.00095	18.8	0.0	0.43	10.2	0.0	2.8	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AIG1	PF04548.11	gi|385803860|ref|YP_005840260.1|	-	0.0014	17.7	0.7	0.084	11.9	0.1	2.4	2	0	0	2	2	2	1	AIG1	family
DUF258	PF03193.11	gi|385803860|ref|YP_005840260.1|	-	0.0042	16.3	0.8	0.71	9.0	0.0	2.7	2	1	0	2	2	2	1	Protein	of	unknown	function,	DUF258
Hpr_kinase_C	PF07475.7	gi|385803860|ref|YP_005840260.1|	-	0.014	14.6	2.6	1.2	8.3	0.0	2.4	2	0	0	2	2	2	0	HPr	Serine	kinase	C-terminal	domain
Sigma54_activat	PF00158.21	gi|385803860|ref|YP_005840260.1|	-	0.024	14.1	0.8	6.5	6.1	0.0	3.2	4	0	0	4	4	3	0	Sigma-54	interaction	domain
AAA_18	PF13238.1	gi|385803860|ref|YP_005840260.1|	-	0.024	14.9	0.0	2	8.7	0.0	3.1	3	0	0	3	3	2	0	AAA	domain
NB-ARC	PF00931.17	gi|385803860|ref|YP_005840260.1|	-	0.06	12.1	1.4	2.6	6.8	0.1	2.3	2	0	0	2	2	2	0	NB-ARC	domain
RNA_helicase	PF00910.17	gi|385803860|ref|YP_005840260.1|	-	0.062	13.4	0.0	4.2	7.5	0.0	2.6	2	0	0	2	2	2	0	RNA	helicase
AAA_30	PF13604.1	gi|385803860|ref|YP_005840260.1|	-	0.062	12.8	1.2	1.9	8.0	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
T2SE	PF00437.15	gi|385803860|ref|YP_005840260.1|	-	0.077	11.8	1.4	1.7	7.4	0.0	2.7	3	0	0	3	3	3	0	Type	II/IV	secretion	system	protein
PRK	PF00485.13	gi|385803860|ref|YP_005840260.1|	-	0.077	12.5	0.4	0.59	9.6	0.0	2.2	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
DUF87	PF01935.12	gi|385803860|ref|YP_005840260.1|	-	0.09	12.5	1.5	13	5.4	0.1	2.8	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF87
NACHT	PF05729.7	gi|385803860|ref|YP_005840260.1|	-	0.094	12.3	0.8	3	7.4	0.0	2.5	2	0	0	2	2	2	0	NACHT	domain
Zeta_toxin	PF06414.7	gi|385803860|ref|YP_005840260.1|	-	0.1	11.7	0.5	1.3	8.0	0.0	2.3	2	0	0	2	2	2	0	Zeta	toxin
AAA	PF00004.24	gi|385803860|ref|YP_005840260.1|	-	0.1	12.8	0.0	3.6	7.8	0.0	3.0	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Mg_chelatase	PF01078.16	gi|385803860|ref|YP_005840260.1|	-	0.11	11.6	0.0	14	4.7	0.0	2.9	4	0	0	4	4	4	0	Magnesium	chelatase,	subunit	ChlI
KaiC	PF06745.8	gi|385803860|ref|YP_005840260.1|	-	0.14	11.2	0.4	7	5.6	0.0	2.6	2	0	0	2	2	2	0	KaiC
DUF3265	PF11665.3	gi|385803860|ref|YP_005840260.1|	-	0.98	9.3	2.8	2.8	7.8	0.4	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3265)
DUF3530	PF12048.3	gi|385803861|ref|YP_005840261.1|	-	0.0042	16.1	0.1	0.005	15.8	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3530)
HhH-GPD	PF00730.20	gi|385803863|ref|YP_005840263.1|	-	6e-14	52.2	0.0	9.7e-14	51.5	0.0	1.3	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.18	gi|385803863|ref|YP_005840263.1|	-	6.9e-09	34.9	0.0	1.3e-08	34.0	0.0	1.5	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
MoCF_biosynth	PF00994.19	gi|385803865|ref|YP_005840265.1|	-	2e-36	124.5	0.4	3.2e-36	123.9	0.3	1.3	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
Lipase_GDSL_2	PF13472.1	gi|385803865|ref|YP_005840265.1|	-	0.07	13.2	0.2	0.19	11.8	0.2	1.8	1	1	0	1	1	1	0	GDSL-like	Lipase/Acylhydrolase	family
TauE	PF01925.14	gi|385803866|ref|YP_005840266.1|	-	0.24	10.8	2.6	0.27	10.6	0.6	1.8	2	0	0	2	2	2	0	Sulfite	exporter	TauE/SafE
DUF2110	PF09883.4	gi|385803867|ref|YP_005840267.1|	-	2e-90	302.3	0.0	2.5e-90	302.0	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2110)
TFIIE_alpha	PF02002.12	gi|385803868|ref|YP_005840268.1|	-	1e-20	73.1	0.1	1.8e-20	72.3	0.0	1.4	2	0	0	2	2	2	1	TFIIE	alpha	subunit
Sigma70_r3	PF04539.11	gi|385803868|ref|YP_005840268.1|	-	0.0033	17.2	0.1	0.007	16.2	0.0	1.5	1	0	0	1	1	1	1	Sigma-70	region	3
HTH_20	PF12840.2	gi|385803868|ref|YP_005840268.1|	-	0.054	13.3	0.3	0.21	11.3	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
HSBP1	PF06825.7	gi|385803868|ref|YP_005840268.1|	-	0.45	10.1	2.4	0.97	9.0	0.1	2.1	2	0	0	2	2	2	0	Heat	shock	factor	binding	protein	1
Trm56	PF01994.11	gi|385803869|ref|YP_005840269.1|	-	1.3e-46	157.2	0.0	1.7e-46	156.8	0.0	1.1	1	0	0	1	1	1	1	tRNA	ribose	2'-O-methyltransferase,	aTrm56
Phage_min_tail	PF05939.8	gi|385803869|ref|YP_005840269.1|	-	0.076	12.9	0.0	0.16	11.9	0.0	1.5	1	0	0	1	1	1	0	Phage	minor	tail	protein
SIS_2	PF13580.1	gi|385803869|ref|YP_005840269.1|	-	0.1	12.2	0.0	0.16	11.6	0.0	1.2	1	0	0	1	1	1	0	SIS	domain
DAO	PF01266.19	gi|385803870|ref|YP_005840270.1|	-	3.8e-15	55.6	0.0	6.1e-15	54.9	0.0	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|385803870|ref|YP_005840270.1|	-	0.011	15.6	0.0	0.017	15.0	0.0	1.3	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|385803870|ref|YP_005840270.1|	-	0.09	13.1	0.1	0.17	12.3	0.1	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Epimerase	PF01370.16	gi|385803871|ref|YP_005840271.1|	-	7.8e-49	166.2	0.0	9.4e-49	165.9	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.12	gi|385803871|ref|YP_005840271.1|	-	1.3e-22	80.0	0.1	1.7e-22	79.6	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.10	gi|385803871|ref|YP_005840271.1|	-	2.2e-15	56.3	0.1	1.4e-14	53.7	0.1	2.1	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
3Beta_HSD	PF01073.14	gi|385803871|ref|YP_005840271.1|	-	1.5e-14	53.3	0.0	2.1e-14	52.8	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_4	PF07993.7	gi|385803871|ref|YP_005840271.1|	-	1.2e-10	40.7	0.0	2.6e-08	33.0	0.0	2.2	1	1	1	2	2	2	2	Male	sterility	protein
NAD_binding_10	PF13460.1	gi|385803871|ref|YP_005840271.1|	-	7.5e-08	32.5	0.0	1e-07	32.1	0.0	1.3	1	0	0	1	1	1	1	NADH(P)-binding
adh_short	PF00106.20	gi|385803871|ref|YP_005840271.1|	-	0.00019	21.4	0.8	0.00034	20.5	0.1	1.8	2	0	0	2	2	2	1	short	chain	dehydrogenase
TrkA_N	PF02254.13	gi|385803871|ref|YP_005840271.1|	-	0.0016	18.4	0.1	0.0029	17.5	0.1	1.5	1	0	0	1	1	1	1	TrkA-N	domain
Ldh_1_N	PF00056.18	gi|385803871|ref|YP_005840271.1|	-	0.0029	17.4	0.1	0.0055	16.5	0.1	1.4	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	NAD	binding	domain
Saccharop_dh	PF03435.13	gi|385803871|ref|YP_005840271.1|	-	0.012	14.6	0.2	0.021	13.7	0.1	1.4	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
NmrA	PF05368.8	gi|385803871|ref|YP_005840271.1|	-	0.025	13.8	0.4	0.57	9.3	0.1	2.1	2	0	0	2	2	2	0	NmrA-like	family
DUF3919	PF13057.1	gi|385803871|ref|YP_005840271.1|	-	0.027	13.9	0.1	0.051	13.0	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3919)
KR	PF08659.5	gi|385803871|ref|YP_005840271.1|	-	0.19	11.3	0.8	0.85	9.2	0.4	2.1	1	1	0	1	1	1	0	KR	domain
DUF2797	PF10977.3	gi|385803872|ref|YP_005840272.1|	-	1.9e-66	224.0	0.1	2.2e-66	223.8	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2797)
VASP_tetra	PF08776.6	gi|385803873|ref|YP_005840273.1|	-	0.035	13.4	0.8	0.059	12.6	0.5	1.4	1	0	0	1	1	1	0	VASP	tetramerisation	domain
ABC_trans_N	PF14510.1	gi|385803873|ref|YP_005840273.1|	-	0.68	10.0	3.6	6.4	6.9	0.0	2.1	2	0	0	2	2	2	0	ABC-transporter	extracellular	N-terminal
DivIVA	PF05103.8	gi|385803873|ref|YP_005840273.1|	-	2.3	8.2	7.5	1.5	8.9	0.3	2.0	2	0	0	2	2	2	0	DivIVA	protein
DUF4140	PF13600.1	gi|385803873|ref|YP_005840273.1|	-	4.3	7.8	9.1	0.46	10.9	0.8	2.1	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
IncA	PF04156.9	gi|385803873|ref|YP_005840273.1|	-	5.2	6.6	6.4	2.1	7.9	0.8	2.0	2	0	0	2	2	2	0	IncA	protein
Cwf_Cwc_15	PF04889.7	gi|385803873|ref|YP_005840273.1|	-	6.1	6.4	19.5	3	7.4	9.5	2.0	2	0	0	2	2	2	0	Cwf15/Cwc15	cell	cycle	control	protein
IU_nuc_hydro	PF01156.14	gi|385803874|ref|YP_005840274.1|	-	2.7e-78	263.3	5.6	3e-78	263.2	3.9	1.0	1	0	0	1	1	1	1	Inosine-uridine	preferring	nucleoside	hydrolase
DUF1593	PF07632.6	gi|385803874|ref|YP_005840274.1|	-	0.044	13.0	0.2	0.79	8.9	0.1	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1593)
Glycos_transf_1	PF00534.15	gi|385803875|ref|YP_005840275.1|	-	5.6e-27	94.2	0.0	1e-24	86.8	0.0	2.3	2	0	0	2	2	2	2	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|385803875|ref|YP_005840275.1|	-	8.7e-14	51.9	0.1	1.7e-13	51.0	0.1	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_4	PF13692.1	gi|385803875|ref|YP_005840275.1|	-	3.6e-13	49.8	0.0	1.9e-10	41.0	0.0	3.4	4	0	0	4	4	4	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|385803875|ref|YP_005840275.1|	-	2.3e-11	43.7	0.0	3.8e-11	43.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_2	PF13477.1	gi|385803875|ref|YP_005840275.1|	-	0.0001	22.1	0.0	0.0004	20.2	0.0	2.0	1	1	0	1	1	1	1	Glycosyl	transferase	4-like
Glyco_trans_1_2	PF13524.1	gi|385803875|ref|YP_005840275.1|	-	0.026	14.7	0.0	0.087	13.1	0.0	1.8	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.15	gi|385803876|ref|YP_005840276.1|	-	5.1e-20	71.5	0.0	1.8e-19	69.7	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|385803876|ref|YP_005840276.1|	-	1.9e-15	57.2	0.0	1.5e-13	51.0	0.0	2.2	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|385803876|ref|YP_005840276.1|	-	4.4e-11	42.8	0.1	8e-11	42.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|385803876|ref|YP_005840276.1|	-	4e-09	36.4	0.0	6.6e-09	35.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.1	gi|385803876|ref|YP_005840276.1|	-	5e-09	36.5	0.0	7.2e-09	35.9	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Rpr2	PF04032.11	gi|385803877|ref|YP_005840277.1|	-	3.3e-17	62.1	0.2	3.8e-17	61.9	0.2	1.0	1	0	0	1	1	1	1	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
DUF164	PF02591.10	gi|385803877|ref|YP_005840277.1|	-	0.0031	17.3	1.8	0.0049	16.6	0.6	1.9	2	1	0	2	2	2	1	Putative	zinc	ribbon	domain
DUF1771	PF08590.5	gi|385803877|ref|YP_005840277.1|	-	0.005	16.8	0.2	0.0073	16.2	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1771)
DNA_RNApol_7kD	PF03604.8	gi|385803877|ref|YP_005840277.1|	-	0.092	12.2	1.1	0.2	11.1	0.1	1.9	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-DNL	PF05180.7	gi|385803877|ref|YP_005840277.1|	-	0.095	12.4	0.3	0.17	11.5	0.2	1.4	1	0	0	1	1	1	0	DNL	zinc	finger
CRS1_YhbY	PF01985.16	gi|385803878|ref|YP_005840278.1|	-	1.2e-18	66.8	0.0	1.5e-18	66.5	0.0	1.0	1	0	0	1	1	1	1	CRS1	/	YhbY	(CRM)	domain
MS_channel	PF00924.13	gi|385803879|ref|YP_005840279.1|	-	2.3e-49	167.5	0.1	3.5e-49	166.9	0.0	1.2	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
CopD	PF05425.8	gi|385803879|ref|YP_005840279.1|	-	1.2	9.3	8.9	0.14	12.3	2.5	1.9	1	1	1	2	2	2	0	Copper	resistance	protein	D
HD	PF01966.17	gi|385803880|ref|YP_005840280.1|	-	1.2e-09	38.1	1.3	2.1e-09	37.4	0.9	1.5	1	0	0	1	1	1	1	HD	domain
MttA_Hcf106	PF02416.11	gi|385803881|ref|YP_005840281.1|	-	3e-15	55.0	0.0	3.4e-15	54.9	0.0	1.2	1	0	0	1	1	1	1	mttA/Hcf106	family
NSP2-B_epitope	PF14757.1	gi|385803881|ref|YP_005840281.1|	-	0.0058	16.1	0.3	0.0067	15.9	0.2	1.0	1	0	0	1	1	1	1	Immunogenic	region	of	nsp2	protein	of	arterivirus	polyprotein
MatE	PF01554.13	gi|385803882|ref|YP_005840282.1|	-	3.5e-62	208.8	35.7	8.7e-36	122.9	10.6	2.7	3	0	0	3	3	3	2	MatE
Polysacc_synt_C	PF14667.1	gi|385803882|ref|YP_005840282.1|	-	7.4e-11	42.0	5.6	7.4e-11	42.0	3.9	4.5	5	1	0	5	5	5	1	Polysaccharide	biosynthesis	C-terminal	domain
Lin-8	PF03353.10	gi|385803883|ref|YP_005840283.1|	-	0.42	9.8	2.1	0.47	9.6	1.5	1.1	1	0	0	1	1	1	0	Ras-mediated	vulval-induction	antagonist
DUF515	PF04415.7	gi|385803883|ref|YP_005840283.1|	-	8.6	4.4	7.3	9.6	4.3	5.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF515)
Glycos_transf_1	PF00534.15	gi|385803884|ref|YP_005840284.1|	-	3.4e-29	101.4	0.0	5.7e-29	100.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|385803884|ref|YP_005840284.1|	-	3.4e-17	62.8	0.0	9.3e-17	61.4	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|385803884|ref|YP_005840284.1|	-	5e-16	59.2	0.4	9.2e-16	58.3	0.3	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.1	gi|385803884|ref|YP_005840284.1|	-	1.8e-08	34.2	0.0	4e-08	33.1	0.0	1.6	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_transf_5	PF08323.6	gi|385803884|ref|YP_005840284.1|	-	7.9e-06	25.5	0.2	0.15	11.5	0.0	2.8	1	1	1	2	2	2	2	Starch	synthase	catalytic	domain
RibD_C	PF01872.12	gi|385803885|ref|YP_005840285.1|	-	1e-49	168.8	0.1	1.2e-49	168.6	0.1	1.0	1	0	0	1	1	1	1	RibD	C-terminal	domain
Sugar-bind	PF04198.8	gi|385803885|ref|YP_005840285.1|	-	0.048	12.5	0.0	0.099	11.5	0.0	1.5	2	0	0	2	2	2	0	Putative	sugar-binding	domain
Thioredoxin	PF00085.15	gi|385803886|ref|YP_005840286.1|	-	3.7e-27	94.0	0.0	4.2e-27	93.8	0.0	1.0	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|385803886|ref|YP_005840286.1|	-	2.3e-08	34.2	0.1	1.7e-07	31.3	0.1	1.9	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_8	PF13905.1	gi|385803886|ref|YP_005840286.1|	-	6.4e-05	23.0	0.1	0.00034	20.6	0.0	2.0	2	1	1	3	3	3	1	Thioredoxin-like
Thioredoxin_7	PF13899.1	gi|385803886|ref|YP_005840286.1|	-	0.0006	19.7	0.0	0.00086	19.2	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin-like
Thioredoxin_3	PF13192.1	gi|385803886|ref|YP_005840286.1|	-	0.0015	18.2	0.1	0.0021	17.8	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin	domain
Thioredoxin_9	PF14595.1	gi|385803886|ref|YP_005840286.1|	-	0.0039	16.7	0.0	0.0046	16.5	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
AhpC-TSA	PF00578.16	gi|385803886|ref|YP_005840286.1|	-	0.043	13.4	0.0	0.047	13.3	0.0	1.2	1	0	0	1	1	1	0	AhpC/TSA	family
Redoxin	PF08534.5	gi|385803886|ref|YP_005840286.1|	-	0.062	12.8	0.0	0.097	12.2	0.0	1.5	1	1	0	1	1	1	0	Redoxin
Glutaredoxin	PF00462.19	gi|385803886|ref|YP_005840286.1|	-	0.13	12.3	0.0	0.21	11.5	0.0	1.4	1	0	0	1	1	1	0	Glutaredoxin
Sigma70_r3	PF04539.11	gi|385803886|ref|YP_005840286.1|	-	0.16	11.8	1.6	2.4	8.0	0.1	2.3	2	0	0	2	2	2	0	Sigma-70	region	3
SBDS	PF01172.13	gi|385803889|ref|YP_005840289.1|	-	3.5e-23	81.1	0.0	5.4e-23	80.5	0.0	1.3	1	0	0	1	1	1	1	Shwachman-Bodian-Diamond	syndrome	(SBDS)	protein
SBDS_C	PF09377.5	gi|385803889|ref|YP_005840289.1|	-	2.2e-17	62.9	0.0	3.3e-17	62.3	0.0	1.2	1	0	0	1	1	1	1	SBDS	protein	C-terminal	domain
DUF3760	PF12586.3	gi|385803889|ref|YP_005840289.1|	-	0.03	14.1	0.1	0.065	13.0	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3760)
YbjN	PF10722.4	gi|385803889|ref|YP_005840289.1|	-	0.069	13.1	1.5	1.2	9.1	0.0	2.3	2	0	0	2	2	2	0	Putative	bacterial	sensory	transduction	regulator
Cation_efflux	PF01545.16	gi|385803890|ref|YP_005840290.1|	-	0.083	11.9	0.1	0.16	11.0	0.0	1.4	2	0	0	2	2	2	0	Cation	efflux	family
Shisa	PF13908.1	gi|385803891|ref|YP_005840291.1|	-	0.00054	20.1	5.0	0.00068	19.8	3.4	1.0	1	0	0	1	1	1	1	Wnt	and	FGF	inhibitory	regulator
Myco_19_kDa	PF05481.7	gi|385803891|ref|YP_005840291.1|	-	4.7	7.0	6.4	0.4	10.4	0.6	1.8	1	1	1	2	2	2	0	Mycobacterium	19	kDa	lipoprotein	antigen
DUF4013	PF13197.1	gi|385803892|ref|YP_005840292.1|	-	0.0027	17.0	22.0	0.0027	17.0	15.3	3.2	1	1	2	3	3	3	2	Protein	of	unknown	function	(DUF4013)
MBOAT_2	PF13813.1	gi|385803892|ref|YP_005840292.1|	-	0.072	13.1	0.5	18	5.4	0.1	2.6	2	0	0	2	2	2	0	Membrane	bound	O-acyl	transferase	family
MFS_1	PF07690.11	gi|385803893|ref|YP_005840293.1|	-	3e-50	170.9	54.7	1.1e-25	90.1	18.5	2.1	2	0	0	2	2	2	2	Major	Facilitator	Superfamily
MFS_3	PF05977.8	gi|385803893|ref|YP_005840293.1|	-	1.1e-06	27.1	18.6	0.00034	18.8	5.9	2.4	2	1	0	2	2	2	2	Transmembrane	secretion	effector
OATP	PF03137.15	gi|385803893|ref|YP_005840293.1|	-	2	6.3	14.1	2.9	5.8	1.0	2.3	2	0	0	2	2	2	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
Acetyltransf_1	PF00583.19	gi|385803894|ref|YP_005840294.1|	-	4.7e-13	48.9	0.3	1.9e-12	47.0	0.0	2.0	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	family
FR47	PF08445.5	gi|385803894|ref|YP_005840294.1|	-	1.6e-08	34.1	0.2	6.9e-08	32.1	0.0	2.0	2	1	0	2	2	2	1	FR47-like	protein
Acetyltransf_7	PF13508.1	gi|385803894|ref|YP_005840294.1|	-	2.9e-07	30.5	0.0	6.4e-07	29.4	0.0	1.6	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|385803894|ref|YP_005840294.1|	-	6.2e-07	29.4	0.1	8.6e-07	28.9	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|385803894|ref|YP_005840294.1|	-	9.4e-07	28.9	0.1	1.9e-06	27.9	0.0	1.6	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.1	gi|385803894|ref|YP_005840294.1|	-	3.2e-06	27.3	0.0	4.3e-06	26.9	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|385803894|ref|YP_005840294.1|	-	0.0009	19.2	0.0	0.0015	18.4	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|385803894|ref|YP_005840294.1|	-	0.0018	18.1	0.1	0.0038	17.0	0.0	1.5	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_9	PF13527.1	gi|385803894|ref|YP_005840294.1|	-	0.011	15.5	0.0	0.018	14.8	0.0	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_13	PF13880.1	gi|385803894|ref|YP_005840294.1|	-	0.021	14.5	0.1	0.047	13.4	0.0	1.5	1	0	0	1	1	1	0	ESCO1/2	acetyl-transferase
CDP-OH_P_transf	PF01066.16	gi|385803895|ref|YP_005840295.1|	-	3.4e-16	59.3	3.7	3.4e-16	59.3	2.5	2.4	1	1	1	2	2	2	1	CDP-alcohol	phosphatidyltransferase
SNARE_assoc	PF09335.6	gi|385803896|ref|YP_005840296.1|	-	3.7e-25	88.5	3.4	3.7e-25	88.5	2.3	1.8	2	0	0	2	2	2	1	SNARE	associated	Golgi	protein
Sarcolipin	PF05366.6	gi|385803896|ref|YP_005840296.1|	-	7.2	6.1	8.9	0.49	9.8	1.0	2.6	2	0	0	2	2	2	0	Sarcolipin
TBP	PF00352.16	gi|385803899|ref|YP_005840299.1|	-	4.1e-64	211.9	0.0	4.3e-31	106.1	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.3	gi|385803899|ref|YP_005840299.1|	-	4.8e-05	23.3	0.0	0.29	11.2	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
CENP-F_C_Rb_bdg	PF10490.4	gi|385803899|ref|YP_005840299.1|	-	0.12	11.7	0.8	8.1	5.8	0.2	2.4	2	0	0	2	2	2	0	Rb-binding	domain	of	kinetochore	protein	Cenp-F/LEK1
ResIII	PF04851.10	gi|385803900|ref|YP_005840300.1|	-	3.5e-20	72.5	0.0	6.6e-20	71.7	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
SNF2_N	PF00176.18	gi|385803900|ref|YP_005840300.1|	-	1.6e-15	56.6	0.0	2.6e-15	56.0	0.0	1.2	1	0	0	1	1	1	1	SNF2	family	N-terminal	domain
Helicase_C	PF00271.26	gi|385803900|ref|YP_005840300.1|	-	9.2e-13	47.8	0.0	2.3e-12	46.5	0.0	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.24	gi|385803900|ref|YP_005840300.1|	-	1.4e-08	34.4	0.0	2.6e-08	33.5	0.0	1.5	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
AAA_22	PF13401.1	gi|385803900|ref|YP_005840300.1|	-	0.00085	19.4	1.3	0.01	16.0	0.2	3.1	3	1	0	3	3	3	1	AAA	domain
HTH_11	PF08279.7	gi|385803900|ref|YP_005840300.1|	-	0.0019	17.8	0.0	0.0053	16.3	0.0	1.7	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.14	gi|385803900|ref|YP_005840300.1|	-	0.0019	17.8	0.1	0.0062	16.2	0.0	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
AAA_5	PF07728.9	gi|385803900|ref|YP_005840300.1|	-	0.0032	17.2	0.1	0.077	12.7	0.0	2.6	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_19	PF13245.1	gi|385803900|ref|YP_005840300.1|	-	0.0032	17.1	0.0	0.01	15.5	0.0	1.9	1	0	0	1	1	1	1	Part	of	AAA	domain
MarR	PF01047.17	gi|385803900|ref|YP_005840300.1|	-	0.022	14.4	0.1	0.083	12.6	0.0	2.0	2	0	0	2	2	2	0	MarR	family
MarR_2	PF12802.2	gi|385803900|ref|YP_005840300.1|	-	0.05	13.2	0.0	0.18	11.4	0.0	2.0	1	0	0	1	1	1	0	MarR	family
HTH_5	PF01022.15	gi|385803900|ref|YP_005840300.1|	-	0.11	12.1	0.0	0.25	11.0	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
AAA	PF00004.24	gi|385803900|ref|YP_005840300.1|	-	0.12	12.5	0.0	0.33	11.1	0.0	1.6	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
HPP	PF04982.8	gi|385803901|ref|YP_005840301.1|	-	5.4e-09	35.9	5.5	7.9e-09	35.3	3.8	1.3	1	0	0	1	1	1	1	HPP	family
PsbR	PF04725.7	gi|385803901|ref|YP_005840301.1|	-	0.11	12.4	2.0	6.7	6.7	0.0	2.5	2	0	0	2	2	2	0	Photosystem	II	10	kDa	polypeptide	PsbR
ABC2_membrane_2	PF12679.2	gi|385803901|ref|YP_005840301.1|	-	0.32	9.8	7.3	0.54	9.0	5.1	1.2	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
PepSY_TM_2	PF13703.1	gi|385803901|ref|YP_005840301.1|	-	0.83	9.8	9.7	0.46	10.6	0.8	2.6	3	0	0	3	3	3	0	PepSY-associated	TM	helix
PAS_4	PF08448.5	gi|385803902|ref|YP_005840302.1|	-	0.1	12.6	0.1	0.14	12.2	0.1	1.2	1	0	0	1	1	1	0	PAS	fold
DUF1660	PF07874.6	gi|385803902|ref|YP_005840302.1|	-	0.25	11.6	1.0	0.63	10.3	0.0	1.9	1	1	1	2	2	2	0	Prophage	protein	(DUF1660)
zf-CHY	PF05495.7	gi|385803902|ref|YP_005840302.1|	-	0.29	11.3	1.7	5.6	7.2	0.0	2.4	1	1	0	2	2	2	0	CHY	zinc	finger
zinc_ribbon_5	PF13719.1	gi|385803902|ref|YP_005840302.1|	-	0.42	10.2	3.2	0.82	9.3	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-UBP	PF02148.14	gi|385803902|ref|YP_005840302.1|	-	0.53	10.4	2.7	14	5.8	1.9	2.3	1	1	0	1	1	1	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
zinc_ribbon_4	PF13717.1	gi|385803902|ref|YP_005840302.1|	-	1.2	8.8	4.0	1.3	8.8	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
LysE	PF01810.13	gi|385803903|ref|YP_005840303.1|	-	4.6e-25	88.0	13.3	5.7e-25	87.7	9.2	1.1	1	0	0	1	1	1	1	LysE	type	translocator
Cystatin	PF00031.16	gi|385803904|ref|YP_005840304.1|	-	0.1	12.7	0.0	0.18	11.9	0.0	1.3	1	0	0	1	1	1	0	Cystatin	domain
Arylsulfotran_2	PF14269.1	gi|385803905|ref|YP_005840305.1|	-	7.4e-14	51.5	0.2	1.4e-12	47.4	0.2	2.3	1	1	0	1	1	1	1	Arylsulfotransferase	(ASST)
Arylsulfotrans	PF05935.6	gi|385803905|ref|YP_005840305.1|	-	4.8e-08	31.9	0.7	2.9e-07	29.3	0.2	2.3	2	1	0	2	2	2	1	Arylsulfotransferase	(ASST)
Fer2	PF00111.22	gi|385803906|ref|YP_005840306.1|	-	2.7e-06	27.0	0.1	1.4e-05	24.7	0.1	2.2	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Polyketide_cyc	PF03364.15	gi|385803907|ref|YP_005840307.1|	-	4.3e-07	29.9	0.0	7.8e-07	29.1	0.0	1.4	1	1	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc2	PF10604.4	gi|385803907|ref|YP_005840307.1|	-	1e-06	28.9	0.2	1.1e-06	28.8	0.1	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Glucodextran_N	PF09137.6	gi|385803908|ref|YP_005840308.1|	-	1.2e-36	126.4	3.2	2.1e-35	122.2	2.2	2.2	1	1	0	1	1	1	1	Glucodextranase,	domain	N
Glyco_hydro_15	PF00723.16	gi|385803908|ref|YP_005840308.1|	-	8.9e-29	100.3	1.2	4.6e-21	74.9	0.0	4.2	3	1	1	4	4	4	3	Glycosyl	hydrolases	family	15
Prenyltrans_1	PF13243.1	gi|385803908|ref|YP_005840308.1|	-	0.097	12.6	7.4	3.5	7.6	0.3	4.0	2	2	2	4	4	4	0	Prenyltransferase-like
Alpha-amylase	PF00128.19	gi|385803909|ref|YP_005840309.1|	-	4.2e-50	170.9	0.0	4.6e-49	167.5	0.0	2.1	1	1	0	1	1	1	1	Alpha	amylase,	catalytic	domain
DUF3459	PF11941.3	gi|385803909|ref|YP_005840309.1|	-	0.0012	18.8	0.0	0.007	16.4	0.0	2.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF3459)
Glyco_hydro_42C	PF08533.5	gi|385803909|ref|YP_005840309.1|	-	0.0042	16.5	0.3	0.28	10.7	0.0	3.1	3	0	0	3	3	3	1	Beta-galactosidase	C-terminal	domain
Alpha-amylase_C	PF02806.13	gi|385803909|ref|YP_005840309.1|	-	0.0065	16.5	0.0	0.018	15.1	0.0	1.8	1	0	0	1	1	1	1	Alpha	amylase,	C-terminal	all-beta	domain
hDGE_amylase	PF14701.1	gi|385803909|ref|YP_005840309.1|	-	0.013	14.4	0.0	0.021	13.7	0.0	1.2	1	0	0	1	1	1	0	glucanotransferase	domain	of	human	glycogen	debranching	enzyme
Surp	PF01805.15	gi|385803909|ref|YP_005840309.1|	-	0.24	11.0	0.6	6.8	6.4	0.2	2.5	2	0	0	2	2	2	0	Surp	module
Zn_Tnp_IS1595	PF12760.2	gi|385803910|ref|YP_005840310.1|	-	0.0047	16.7	3.5	0.034	13.9	2.9	1.9	1	1	1	2	2	2	1	Transposase	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|385803910|ref|YP_005840310.1|	-	0.0064	15.6	2.5	0.53	9.5	0.1	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
Trm112p	PF03966.11	gi|385803910|ref|YP_005840310.1|	-	0.013	15.8	0.1	0.37	11.1	0.0	2.1	2	0	0	2	2	2	0	Trm112p-like	protein
OrfB_Zn_ribbon	PF07282.6	gi|385803910|ref|YP_005840310.1|	-	0.02	14.5	0.5	0.04	13.5	0.3	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
TFIIS_C	PF01096.13	gi|385803910|ref|YP_005840310.1|	-	0.035	13.7	1.0	1.7	8.3	0.1	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-RING_3	PF14369.1	gi|385803910|ref|YP_005840310.1|	-	0.042	13.8	3.1	2	8.4	0.1	2.3	1	1	1	2	2	2	0	zinc-finger
TF_Zn_Ribbon	PF08271.7	gi|385803910|ref|YP_005840310.1|	-	0.053	12.8	1.6	0.35	10.2	0.1	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-nanos	PF05741.8	gi|385803910|ref|YP_005840310.1|	-	0.079	12.9	1.9	7	6.7	0.1	2.1	1	1	1	2	2	2	0	Nanos	RNA	binding	domain
PhnA_Zn_Ribbon	PF08274.7	gi|385803910|ref|YP_005840310.1|	-	0.14	11.9	2.2	0.9	9.3	0.1	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
DUF2296	PF10058.4	gi|385803910|ref|YP_005840310.1|	-	0.14	11.8	0.6	3.4	7.5	0.1	2.2	2	0	0	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
UPF0547	PF10571.4	gi|385803910|ref|YP_005840310.1|	-	0.2	11.3	6.5	0.59	9.8	0.2	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-C2H2_4	PF13894.1	gi|385803910|ref|YP_005840310.1|	-	0.28	11.5	1.2	6	7.4	0.1	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
Zn_Tnp_IS1	PF03811.8	gi|385803910|ref|YP_005840310.1|	-	0.29	10.6	1.8	7.3	6.1	0.1	2.2	2	0	0	2	2	2	0	InsA	N-terminal	domain
Zn-ribbon_8	PF09723.5	gi|385803910|ref|YP_005840310.1|	-	0.45	10.5	3.5	1.9	8.4	2.4	1.9	1	1	0	1	1	1	0	Zinc	ribbon	domain
zinc_ribbon_5	PF13719.1	gi|385803910|ref|YP_005840310.1|	-	0.51	9.9	4.1	9.7	5.8	0.1	2.6	3	0	0	3	3	3	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|385803910|ref|YP_005840310.1|	-	0.53	10.0	4.1	13	5.5	0.1	2.7	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-FPG_IleRS	PF06827.9	gi|385803910|ref|YP_005840310.1|	-	1.4	8.6	4.2	0.93	9.2	0.2	2.1	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
zf-HIT	PF04438.11	gi|385803910|ref|YP_005840310.1|	-	2	8.1	4.7	2.2	8.0	0.2	2.1	2	0	0	2	2	2	0	HIT	zinc	finger
PMT_2	PF13231.1	gi|385803911|ref|YP_005840311.1|	-	5.3e-10	39.4	16.4	5.3e-10	39.4	11.4	2.6	2	0	0	2	2	2	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
Glyco_transf_22	PF03901.12	gi|385803911|ref|YP_005840311.1|	-	0.0082	15.1	4.9	0.015	14.2	3.4	1.4	1	0	0	1	1	1	1	Alg9-like	mannosyltransferase	family
ABC_tran	PF00005.22	gi|385803912|ref|YP_005840312.1|	-	1.5e-34	119.2	0.0	3.1e-34	118.2	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385803912|ref|YP_005840312.1|	-	1.6e-06	28.2	0.2	0.0027	17.7	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|385803912|ref|YP_005840312.1|	-	4.9e-05	23.3	0.3	0.00017	21.6	0.1	1.7	1	1	1	2	2	2	1	AAA	ATPase	domain
TOBE_2	PF08402.5	gi|385803912|ref|YP_005840312.1|	-	0.00025	20.9	0.2	0.0041	17.0	0.1	2.9	1	1	0	1	1	1	1	TOBE	domain
AAA	PF00004.24	gi|385803912|ref|YP_005840312.1|	-	0.00032	20.9	0.0	0.0021	18.2	0.0	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Rad17	PF03215.10	gi|385803912|ref|YP_005840312.1|	-	0.00035	19.3	0.0	0.00052	18.8	0.0	1.4	1	1	0	1	1	1	1	Rad17	cell	cycle	checkpoint	protein
AAA_22	PF13401.1	gi|385803912|ref|YP_005840312.1|	-	0.0026	17.9	0.5	0.012	15.6	0.3	2.0	1	1	0	1	1	1	1	AAA	domain
DUF258	PF03193.11	gi|385803912|ref|YP_005840312.1|	-	0.019	14.1	0.1	0.037	13.2	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
SbcCD_C	PF13558.1	gi|385803912|ref|YP_005840312.1|	-	0.025	14.5	0.4	0.14	12.0	0.3	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_33	PF13671.1	gi|385803912|ref|YP_005840312.1|	-	0.027	14.3	0.1	0.096	12.5	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.17	gi|385803912|ref|YP_005840312.1|	-	0.032	13.0	0.1	0.048	12.5	0.1	1.2	1	0	0	1	1	1	0	NB-ARC	domain
AAA_25	PF13481.1	gi|385803912|ref|YP_005840312.1|	-	0.037	13.4	0.2	0.11	11.9	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_19	PF13245.1	gi|385803912|ref|YP_005840312.1|	-	0.1	12.3	0.2	0.23	11.2	0.1	1.6	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_15	PF13175.1	gi|385803912|ref|YP_005840312.1|	-	0.11	11.5	0.0	0.43	9.5	0.0	1.8	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_28	PF13521.1	gi|385803912|ref|YP_005840312.1|	-	0.41	10.5	2.3	2.1	8.3	0.5	2.2	2	0	0	2	2	2	0	AAA	domain
BPD_transp_1	PF00528.17	gi|385803913|ref|YP_005840313.1|	-	3.8e-26	91.7	28.4	2e-15	56.7	5.4	4.0	3	1	1	4	4	4	2	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_6	PF13343.1	gi|385803914|ref|YP_005840314.1|	-	1.2e-15	57.5	0.0	1.5e-15	57.1	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.1	gi|385803914|ref|YP_005840314.1|	-	1.3e-10	41.4	0.0	2.1e-10	40.8	0.0	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.1	gi|385803914|ref|YP_005840314.1|	-	7.3e-08	32.3	0.3	1.3e-07	31.5	0.2	1.4	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
UCR_Fe-S_N	PF10399.4	gi|385803914|ref|YP_005840314.1|	-	0.78	8.9	6.3	0.29	10.3	1.9	2.0	2	0	0	2	2	2	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
TAT_signal	PF10518.4	gi|385803914|ref|YP_005840314.1|	-	1.3	9.2	11.6	0.1	12.6	4.2	2.1	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
RGP	PF03214.8	gi|385803915|ref|YP_005840315.1|	-	1.6e-16	60.0	0.0	1.7e-16	59.8	0.0	1.2	1	0	0	1	1	1	1	Reversibly	glycosylated	polypeptide
Cytochrom_C_2	PF01322.15	gi|385803915|ref|YP_005840315.1|	-	0.058	13.9	0.2	0.14	12.7	0.1	1.6	1	0	0	1	1	1	0	Cytochrome	C'
DUF393	PF04134.7	gi|385803916|ref|YP_005840316.1|	-	3.7e-08	34.4	0.4	5.5e-08	33.9	0.3	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function,	DUF393
DUF123	PF01986.11	gi|385803917|ref|YP_005840317.1|	-	5.5e-25	87.3	0.0	7.2e-25	86.9	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF123
FAD-oxidase_C	PF02913.14	gi|385803918|ref|YP_005840318.1|	-	2.2e-64	217.1	0.1	3.7e-64	216.4	0.1	1.4	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.18	gi|385803918|ref|YP_005840318.1|	-	1.4e-40	137.9	0.4	3.3e-40	136.7	0.3	1.7	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_17	PF13534.1	gi|385803918|ref|YP_005840318.1|	-	3e-08	33.9	4.1	6.2e-08	32.8	2.9	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|385803918|ref|YP_005840318.1|	-	4e-08	33.1	4.8	7.5e-08	32.2	3.3	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
CCG	PF02754.11	gi|385803918|ref|YP_005840318.1|	-	4.2e-08	33.0	0.0	1.7e-06	27.9	0.0	2.6	2	0	0	2	2	2	1	Cysteine-rich	domain
Fer4_18	PF13746.1	gi|385803918|ref|YP_005840318.1|	-	2.8e-05	24.4	1.7	9.6e-05	22.7	0.2	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|385803918|ref|YP_005840318.1|	-	0.0004	20.5	2.0	0.013	15.7	0.1	2.5	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|385803918|ref|YP_005840318.1|	-	0.00045	19.9	3.4	0.013	15.2	0.3	2.5	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|385803918|ref|YP_005840318.1|	-	0.0016	19.1	1.2	0.11	13.2	0.1	2.6	2	0	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_7	PF12838.2	gi|385803918|ref|YP_005840318.1|	-	0.002	18.4	4.1	0.097	13.0	3.1	2.5	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Cytokin-bind	PF09265.5	gi|385803918|ref|YP_005840318.1|	-	0.0075	15.4	0.0	0.015	14.4	0.0	1.4	1	0	0	1	1	1	1	Cytokinin	dehydrogenase	1,	FAD	and	cytokinin	binding
Fer4_21	PF14697.1	gi|385803918|ref|YP_005840318.1|	-	0.067	13.0	4.1	0.099	12.5	0.2	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|385803918|ref|YP_005840318.1|	-	0.18	11.4	14.6	0.048	13.2	2.9	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|385803918|ref|YP_005840318.1|	-	0.81	10.2	6.8	0.16	12.5	0.2	2.8	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_6	PF12837.2	gi|385803918|ref|YP_005840318.1|	-	4.2	7.3	10.8	0.53	10.2	1.7	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|385803918|ref|YP_005840318.1|	-	7.6	6.6	11.7	0.4	10.6	1.5	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
DDE_Tnp_1	PF01609.16	gi|385803921|ref|YP_005840321.1|	-	1.9e-14	53.7	0.0	3.3e-14	52.9	0.0	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_4	PF13701.1	gi|385803921|ref|YP_005840321.1|	-	0.0024	16.1	0.0	0.0035	15.5	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain	group	1
DUF2015	PF09435.5	gi|385803921|ref|YP_005840321.1|	-	0.097	12.4	0.2	0.21	11.3	0.1	1.6	1	0	0	1	1	1	0	Fungal	protein	of	unknown	function	(DUF2015)
DDE_5	PF13546.1	gi|385803922|ref|YP_005840322.1|	-	5.5e-20	71.3	0.0	8.7e-20	70.6	0.0	1.2	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.16	gi|385803922|ref|YP_005840322.1|	-	2.8e-17	62.9	0.4	5.2e-17	62.0	0.1	1.6	2	1	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.7	gi|385803922|ref|YP_005840322.1|	-	0.00011	21.3	0.5	0.00045	19.3	0.3	1.8	1	1	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1_6	PF13751.1	gi|385803922|ref|YP_005840322.1|	-	0.01	15.8	0.0	0.035	14.1	0.0	1.9	2	0	0	2	2	2	0	Transposase	DDE	domain
DUF3267	PF11667.3	gi|385803924|ref|YP_005840324.1|	-	1.3e-05	25.3	2.7	1.3e-05	25.3	1.9	1.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3267)
Peptidase_M50B	PF13398.1	gi|385803924|ref|YP_005840324.1|	-	0.25	10.6	11.6	4.2	6.6	7.6	2.3	1	1	0	1	1	1	0	Peptidase	M50B-like
Ibs_toxin	PF13956.1	gi|385803924|ref|YP_005840324.1|	-	0.52	10.1	3.7	1.5	8.6	2.6	1.8	1	0	0	1	1	1	0	Toxin	Ibs,	type	I	toxin-antitoxin	system
Gly-zipper_OmpA	PF13436.1	gi|385803926|ref|YP_005840326.1|	-	0.0014	18.2	3.0	0.0014	18.2	2.1	1.6	2	0	0	2	2	2	1	Glycine-zipper	containing	OmpA-like	membrane	domain
DUF39	PF01837.11	gi|385803926|ref|YP_005840326.1|	-	0.072	11.7	1.0	0.1	11.2	0.7	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF39
Gly-zipper_Omp	PF13488.1	gi|385803926|ref|YP_005840326.1|	-	0.091	12.4	13.6	0.15	11.6	9.4	1.3	1	0	0	1	1	1	0	Glycine	zipper
Hid1	PF12722.2	gi|385803926|ref|YP_005840326.1|	-	0.11	10.2	1.9	0.095	10.3	1.3	1.0	1	0	0	1	1	1	0	High-temperature-induced	dauer-formation	protein
DUF1510	PF07423.6	gi|385803926|ref|YP_005840326.1|	-	0.22	10.8	10.4	0.32	10.3	7.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1510)
Rick_17kDa_Anti	PF05433.10	gi|385803926|ref|YP_005840326.1|	-	0.6	9.8	14.2	0.89	9.2	9.9	1.3	1	0	0	1	1	1	0	Glycine	zipper	2TM	domain
Gly-zipper_YMGG	PF13441.1	gi|385803926|ref|YP_005840326.1|	-	0.84	9.1	13.4	1.4	8.5	9.3	1.3	1	0	0	1	1	1	0	YMGG-like	Gly-zipper
Bacteriocin_IIc	PF10439.4	gi|385803926|ref|YP_005840326.1|	-	0.87	9.7	9.8	1.4	9.0	6.8	1.4	1	0	0	1	1	1	0	Bacteriocin	class	II	with	double-glycine	leader	peptide
DDE_Tnp_IS1595	PF12762.2	gi|385803927|ref|YP_005840327.1|	-	1.9e-23	82.9	0.0	3e-23	82.3	0.0	1.2	1	0	0	1	1	1	1	ISXO2-like	transposase	domain
Zn_Tnp_IS1595	PF12760.2	gi|385803927|ref|YP_005840327.1|	-	1.5e-10	40.6	4.8	2.9e-10	39.7	3.3	1.5	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Zn_Tnp_IS1	PF03811.8	gi|385803927|ref|YP_005840327.1|	-	1.3e-05	24.5	6.4	3.3e-05	23.2	4.5	1.7	1	0	0	1	1	1	1	InsA	N-terminal	domain
DUF2089	PF09862.4	gi|385803927|ref|YP_005840327.1|	-	0.026	14.3	0.0	0.04	13.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2089)
Auxin_inducible	PF02519.9	gi|385803927|ref|YP_005840327.1|	-	0.035	14.1	0.0	0.063	13.3	0.0	1.3	1	0	0	1	1	1	0	Auxin	responsive	protein
zf-ISL3	PF14690.1	gi|385803927|ref|YP_005840327.1|	-	0.11	12.6	8.7	0.19	11.7	0.7	2.8	2	1	1	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-Dof	PF02701.10	gi|385803927|ref|YP_005840327.1|	-	0.11	12.4	3.8	0.2	11.5	2.6	1.4	1	0	0	1	1	1	0	Dof	domain,	zinc	finger
Zn-ribbon_8	PF09723.5	gi|385803927|ref|YP_005840327.1|	-	0.55	10.2	4.7	6.7	6.7	0.4	2.5	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-C2H2_6	PF13912.1	gi|385803927|ref|YP_005840327.1|	-	5	7.1	6.8	1.1	9.2	0.2	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
PALP	PF00291.20	gi|385803928|ref|YP_005840328.1|	-	4.3e-57	193.6	0.3	6.1e-57	193.1	0.2	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ADH_zinc_N	PF00107.21	gi|385803928|ref|YP_005840328.1|	-	0.019	14.4	0.2	0.052	13.0	0.1	1.8	1	1	0	1	1	1	0	Zinc-binding	dehydrogenase
Thioredoxin	PF00085.15	gi|385803929|ref|YP_005840329.1|	-	5.9e-06	25.8	0.0	8.1e-06	25.4	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
AhpC-TSA	PF00578.16	gi|385803929|ref|YP_005840329.1|	-	0.00031	20.4	0.0	0.00047	19.8	0.0	1.5	1	1	0	1	1	1	1	AhpC/TSA	family
Thioredoxin_9	PF14595.1	gi|385803929|ref|YP_005840329.1|	-	0.0038	16.7	0.1	0.017	14.6	0.0	1.9	1	1	1	2	2	2	1	Thioredoxin
Thioredoxin_8	PF13905.1	gi|385803929|ref|YP_005840329.1|	-	0.01	15.9	0.0	0.071	13.2	0.0	2.1	1	1	0	1	1	1	0	Thioredoxin-like
Thioredoxin_3	PF13192.1	gi|385803929|ref|YP_005840329.1|	-	0.025	14.3	0.1	0.046	13.5	0.0	1.5	1	1	0	1	1	1	0	Thioredoxin	domain
Redoxin	PF08534.5	gi|385803929|ref|YP_005840329.1|	-	0.026	14.0	0.0	0.07	12.6	0.0	1.7	1	1	0	1	1	1	0	Redoxin
Thioredoxin_2	PF13098.1	gi|385803929|ref|YP_005840329.1|	-	0.06	13.5	0.1	0.3	11.2	0.1	2.0	1	1	0	1	1	1	0	Thioredoxin-like	domain
DUF1923	PF09083.5	gi|385803929|ref|YP_005840329.1|	-	0.092	12.2	0.5	10	5.6	0.0	2.8	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1923)
Prok-RING_1	PF14446.1	gi|385803930|ref|YP_005840330.1|	-	0.71	9.6	6.0	1	9.1	4.1	1.2	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
Thioredox_DsbH	PF03190.10	gi|385803931|ref|YP_005840331.1|	-	2e-72	242.2	0.0	3.2e-72	241.5	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF255
Thioredoxin_7	PF13899.1	gi|385803931|ref|YP_005840331.1|	-	1.8e-10	40.6	0.0	4.2e-10	39.5	0.0	1.6	1	0	0	1	1	1	1	Thioredoxin-like
GlcNAc_2-epim	PF07221.6	gi|385803931|ref|YP_005840331.1|	-	8e-05	21.8	0.1	0.0067	15.4	0.0	2.4	2	0	0	2	2	2	2	N-acylglucosamine	2-epimerase	(GlcNAc	2-epimerase)
C5-epim_C	PF06662.8	gi|385803931|ref|YP_005840331.1|	-	0.012	14.8	0.1	0.74	9.0	0.0	2.9	2	1	1	3	3	3	0	D-glucuronyl	C5-epimerase	C-terminus
Glyco_hydro_88	PF07470.8	gi|385803931|ref|YP_005840331.1|	-	0.02	13.9	0.2	0.24	10.4	0.0	2.4	1	1	0	2	2	2	0	Glycosyl	Hydrolase	Family	88
Thioredoxin_2	PF13098.1	gi|385803931|ref|YP_005840331.1|	-	0.022	14.9	0.0	0.056	13.6	0.0	1.6	1	0	0	1	1	1	0	Thioredoxin-like	domain
GARS_A	PF01071.14	gi|385803932|ref|YP_005840332.1|	-	3.4e-52	176.8	0.0	4.7e-52	176.3	0.0	1.2	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
GARS_N	PF02844.10	gi|385803932|ref|YP_005840332.1|	-	5.2e-24	84.6	0.1	1.1e-23	83.5	0.0	1.6	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	N	domain
GARS_C	PF02843.11	gi|385803932|ref|YP_005840332.1|	-	4e-20	71.7	1.3	1.1e-19	70.3	0.3	2.2	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	C	domain
ATP-grasp_4	PF13535.1	gi|385803932|ref|YP_005840332.1|	-	4e-20	72.3	0.0	9.3e-20	71.1	0.0	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|385803932|ref|YP_005840332.1|	-	2.1e-11	43.1	0.0	1.4e-10	40.4	0.0	2.3	1	1	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp_3	PF02655.9	gi|385803932|ref|YP_005840332.1|	-	1.1e-06	28.6	0.0	2.6e-06	27.3	0.0	1.7	1	1	0	1	1	1	1	ATP-grasp	domain
Hexapep	PF00132.19	gi|385803933|ref|YP_005840333.1|	-	4.8e-09	35.3	3.4	1.9e-06	27.0	0.1	3.1	3	0	0	3	3	3	2	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.1	gi|385803933|ref|YP_005840333.1|	-	2.5e-07	30.1	0.6	0.00011	21.6	0.0	2.7	3	0	0	3	3	3	2	Hexapeptide	repeat	of	succinyl-transferase
MS_channel	PF00924.13	gi|385803934|ref|YP_005840334.1|	-	2.9e-15	56.1	2.4	2.9e-15	56.1	1.7	2.1	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
TM_helix	PF05552.7	gi|385803934|ref|YP_005840334.1|	-	3.1e-05	23.5	0.0	3.1e-05	23.5	0.0	3.3	4	0	0	4	4	4	2	Conserved	TM	helix
DUF373	PF04123.8	gi|385803934|ref|YP_005840334.1|	-	3.9	6.3	16.7	5.5	5.8	11.6	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF373)
DisA_N	PF02457.11	gi|385803935|ref|YP_005840335.1|	-	6.2e-25	86.7	0.0	9.7e-25	86.0	0.0	1.3	1	0	0	1	1	1	1	DisA	bacterial	checkpoint	controller	nucleotide-binding
TFIIB	PF00382.14	gi|385803936|ref|YP_005840336.1|	-	1.8e-05	24.4	0.3	2.8e-05	23.8	0.2	1.4	1	1	0	1	1	1	1	Transcription	factor	TFIIB	repeat
DUF4608	PF15381.1	gi|385803936|ref|YP_005840336.1|	-	0.017	15.2	0.1	0.024	14.7	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4608)
CTP_transf_2	PF01467.21	gi|385803937|ref|YP_005840337.1|	-	6.2e-12	45.8	0.1	4.5e-10	39.8	0.1	2.1	1	1	0	1	1	1	1	Cytidylyltransferase
FAD_syn	PF06574.7	gi|385803937|ref|YP_005840337.1|	-	0.00015	21.4	0.0	0.011	15.3	0.0	2.2	2	0	0	2	2	2	2	FAD	synthetase
GCS2	PF04107.8	gi|385803938|ref|YP_005840338.1|	-	1.1e-72	244.6	0.4	1.2e-72	244.4	0.3	1.0	1	0	0	1	1	1	1	Glutamate-cysteine	ligase	family	2(GCS2)
Amidoligase_2	PF12224.3	gi|385803938|ref|YP_005840338.1|	-	0.018	14.6	0.7	0.32	10.5	0.2	2.7	2	1	0	2	2	2	0	Putative	amidoligase	enzyme
Fibrillarin	PF01269.12	gi|385803939|ref|YP_005840339.1|	-	2.4e-50	170.6	0.0	2.8e-50	170.3	0.0	1.0	1	0	0	1	1	1	1	Fibrillarin
Nop	PF01798.13	gi|385803940|ref|YP_005840340.1|	-	1.2e-42	144.7	0.1	1.7e-42	144.2	0.1	1.2	1	0	0	1	1	1	1	Putative	snoRNA	binding	domain
MutS_III	PF05192.13	gi|385803940|ref|YP_005840340.1|	-	0.013	15.2	0.1	0.017	14.9	0.0	1.3	1	1	0	1	1	1	0	MutS	domain	III
TFIIB	PF00382.14	gi|385803942|ref|YP_005840342.1|	-	3.5e-42	142.0	0.6	1.5e-20	72.7	0.0	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|385803942|ref|YP_005840342.1|	-	9e-18	63.3	1.4	2e-17	62.2	1.0	1.6	1	0	0	1	1	1	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.11	gi|385803942|ref|YP_005840342.1|	-	0.0089	15.3	1.8	0.063	12.6	0.0	2.9	3	0	0	3	3	3	1	Sigma-70,	region	4
HTH_24	PF13412.1	gi|385803942|ref|YP_005840342.1|	-	0.013	14.8	0.1	0.026	13.8	0.1	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.7	gi|385803942|ref|YP_005840342.1|	-	0.027	14.1	0.1	0.06	13.0	0.0	1.6	1	0	0	1	1	1	0	HTH	domain
Rubredoxin	PF00301.15	gi|385803942|ref|YP_005840342.1|	-	0.044	13.6	0.1	7.5	6.5	0.0	2.6	2	0	0	2	2	2	0	Rubredoxin
HTH_AsnC-type	PF13404.1	gi|385803942|ref|YP_005840342.1|	-	0.045	13.2	0.0	0.29	10.7	0.0	2.5	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
TrmB	PF01978.14	gi|385803942|ref|YP_005840342.1|	-	0.059	13.0	1.3	0.12	12.0	0.2	2.0	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
Cyclin_C	PF02984.14	gi|385803942|ref|YP_005840342.1|	-	0.11	12.4	0.0	1.8	8.5	0.0	2.4	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
DZR	PF12773.2	gi|385803942|ref|YP_005840342.1|	-	0.13	12.1	0.6	0.23	11.3	0.4	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
UreF	PF01730.11	gi|385803942|ref|YP_005840342.1|	-	0.15	12.1	4.0	10	6.2	0.1	2.9	2	1	1	3	3	3	0	UreF
A2L_zn_ribbon	PF08792.5	gi|385803942|ref|YP_005840342.1|	-	0.2	11.1	0.6	0.37	10.3	0.4	1.4	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|385803942|ref|YP_005840342.1|	-	0.28	10.8	1.6	0.57	9.8	1.1	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
UPF0058	PF01893.11	gi|385803944|ref|YP_005840344.1|	-	5.2e-20	71.3	0.0	5.9e-20	71.1	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0058
DUF555	PF04475.7	gi|385803945|ref|YP_005840345.1|	-	8.9e-39	131.6	0.1	1.1e-38	131.3	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF555)
OGG_N	PF07934.7	gi|385803946|ref|YP_005840346.1|	-	2e-20	72.8	0.0	3.6e-20	72.0	0.0	1.4	1	0	0	1	1	1	1	8-oxoguanine	DNA	glycosylase,	N-terminal	domain
HhH-GPD	PF00730.20	gi|385803946|ref|YP_005840346.1|	-	2.7e-10	40.4	0.0	4e-10	39.9	0.0	1.3	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
Glyco_hydro_77	PF02446.12	gi|385803947|ref|YP_005840347.1|	-	5.9e-119	397.8	0.2	5.1e-97	325.4	1.5	2.0	2	0	0	2	2	2	2	4-alpha-glucanotransferase
tRNA-synt_2b	PF00587.20	gi|385803948|ref|YP_005840348.1|	-	6.5e-40	136.5	0.0	1.2e-39	135.6	0.0	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.15	gi|385803948|ref|YP_005840348.1|	-	1.4e-19	69.7	0.8	4.1e-19	68.2	0.1	2.2	3	0	0	3	3	3	1	Anticodon	binding	domain
TGS	PF02824.16	gi|385803948|ref|YP_005840348.1|	-	1.2e-12	47.4	0.2	2.8e-12	46.2	0.1	1.7	1	0	0	1	1	1	1	TGS	domain
tRNA_SAD	PF07973.9	gi|385803948|ref|YP_005840348.1|	-	1.9e-11	43.6	0.0	3.6e-11	42.7	0.0	1.5	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
OrfB_IS605	PF01385.14	gi|385803949|ref|YP_005840349.1|	-	6.5e-48	163.0	0.0	8.8e-48	162.6	0.0	1.2	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|385803949|ref|YP_005840349.1|	-	8.9e-18	63.7	2.4	8.9e-18	63.7	1.6	2.4	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
C1_2	PF03107.11	gi|385803949|ref|YP_005840349.1|	-	0.025	14.6	3.8	0.06	13.4	2.6	1.6	1	0	0	1	1	1	0	C1	domain
DUF3791	PF12668.2	gi|385803949|ref|YP_005840349.1|	-	0.08	12.5	0.1	0.18	11.4	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3791)
C1_3	PF07649.7	gi|385803949|ref|YP_005840349.1|	-	0.19	11.8	2.6	0.61	10.1	1.8	1.9	1	0	0	1	1	1	0	C1-like	domain
RRN7	PF11781.3	gi|385803949|ref|YP_005840349.1|	-	3.7	7.1	8.6	0.71	9.4	3.3	1.9	2	0	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
NAD_synthase	PF02540.12	gi|385803950|ref|YP_005840350.1|	-	7.6e-64	214.9	0.0	1.1e-63	214.4	0.0	1.1	1	0	0	1	1	1	1	NAD	synthase
CN_hydrolase	PF00795.17	gi|385803950|ref|YP_005840350.1|	-	1.3e-13	50.6	0.0	2.6e-13	49.7	0.0	1.5	2	0	0	2	2	2	1	Carbon-nitrogen	hydrolase
tRNA_Me_trans	PF03054.11	gi|385803950|ref|YP_005840350.1|	-	4.5e-08	32.0	0.0	5e-06	25.3	0.0	2.2	2	0	0	2	2	2	2	tRNA	methyl	transferase
Asn_synthase	PF00733.16	gi|385803950|ref|YP_005840350.1|	-	1.5e-06	27.9	0.0	2.4e-06	27.2	0.0	1.2	1	0	0	1	1	1	1	Asparagine	synthase
QueC	PF06508.8	gi|385803950|ref|YP_005840350.1|	-	0.0071	15.6	0.0	0.025	13.8	0.0	1.8	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
TrkA_N	PF02254.13	gi|385803951|ref|YP_005840351.1|	-	1.6e-21	76.4	2.6	1.6e-21	76.4	1.8	2.2	2	0	0	2	2	2	1	TrkA-N	domain
DHH	PF01368.15	gi|385803951|ref|YP_005840351.1|	-	1.3e-12	47.6	0.7	4.2e-12	45.9	0.2	2.0	2	0	0	2	2	2	1	DHH	family
F420_oxidored	PF03807.12	gi|385803951|ref|YP_005840351.1|	-	3e-07	30.7	2.5	4.6e-07	30.1	0.3	2.3	2	1	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_10	PF13460.1	gi|385803951|ref|YP_005840351.1|	-	4.9e-07	29.9	3.2	7.1e-07	29.3	1.4	1.8	1	1	0	1	1	1	1	NADH(P)-binding
ApbA	PF02558.11	gi|385803951|ref|YP_005840351.1|	-	2e-06	27.2	0.0	4.7e-06	26.1	0.0	1.7	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
DHHA1	PF02272.14	gi|385803951|ref|YP_005840351.1|	-	5.1e-06	26.0	0.0	3e-05	23.6	0.0	2.2	2	0	0	2	2	2	1	DHHA1	domain
Saccharop_dh	PF03435.13	gi|385803951|ref|YP_005840351.1|	-	5.8e-06	25.5	0.6	9.8e-06	24.7	0.4	1.2	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
UDPG_MGDP_dh_N	PF03721.9	gi|385803951|ref|YP_005840351.1|	-	3.2e-05	23.3	0.1	8.3e-05	22.0	0.1	1.7	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_7	PF13241.1	gi|385803951|ref|YP_005840351.1|	-	6.6e-05	23.1	0.7	0.00022	21.4	0.5	1.8	1	0	0	1	1	1	1	Putative	NAD(P)-binding
NAD_binding_2	PF03446.10	gi|385803951|ref|YP_005840351.1|	-	0.00012	22.0	0.0	0.00022	21.0	0.0	1.5	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
IlvN	PF07991.7	gi|385803951|ref|YP_005840351.1|	-	0.00021	20.6	0.4	0.00041	19.7	0.3	1.4	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
NAD_Gly3P_dh_N	PF01210.18	gi|385803951|ref|YP_005840351.1|	-	0.00039	20.1	0.0	0.00098	18.8	0.0	1.7	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
ADH_zinc_N	PF00107.21	gi|385803951|ref|YP_005840351.1|	-	0.0013	18.2	0.2	0.1	12.1	0.1	2.8	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
3HCDH_N	PF02737.13	gi|385803951|ref|YP_005840351.1|	-	0.0034	17.0	1.9	0.0035	17.0	0.2	1.9	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
adh_short	PF00106.20	gi|385803951|ref|YP_005840351.1|	-	0.0038	17.1	7.7	0.016	15.1	0.9	3.1	2	1	1	3	3	3	2	short	chain	dehydrogenase
DAO	PF01266.19	gi|385803951|ref|YP_005840351.1|	-	0.0056	15.6	0.0	0.011	14.7	0.0	1.6	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
ThiF	PF00899.16	gi|385803951|ref|YP_005840351.1|	-	0.0086	15.8	3.8	0.0094	15.7	0.9	2.3	2	1	0	2	2	2	1	ThiF	family
XdhC_C	PF13478.1	gi|385803951|ref|YP_005840351.1|	-	0.021	15.1	1.0	0.11	12.7	0.7	2.2	1	1	0	1	1	1	0	XdhC	Rossmann	domain
2-Hacid_dh_C	PF02826.14	gi|385803951|ref|YP_005840351.1|	-	0.025	13.7	0.1	0.18	10.9	0.0	2.2	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_8	PF13450.1	gi|385803951|ref|YP_005840351.1|	-	0.057	13.4	0.0	0.14	12.2	0.0	1.7	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
UDPG_MGDP_dh_C	PF03720.10	gi|385803951|ref|YP_005840351.1|	-	0.12	12.5	4.9	1.4	9.1	0.7	2.7	1	1	2	3	3	3	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
KR	PF08659.5	gi|385803951|ref|YP_005840351.1|	-	0.15	11.7	2.8	0.29	10.7	0.7	2.2	1	1	2	3	3	3	0	KR	domain
PRC	PF05239.11	gi|385803952|ref|YP_005840352.1|	-	2.5e-09	36.8	1.8	3.8e-09	36.2	1.2	1.3	1	0	0	1	1	1	1	PRC-barrel	domain
DUF3315	PF11776.3	gi|385803952|ref|YP_005840352.1|	-	0.059	12.8	0.5	0.11	11.9	0.4	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3315)
zf-FCS	PF06467.9	gi|385803954|ref|YP_005840354.1|	-	0.54	9.9	3.2	8.2	6.1	2.2	2.3	1	1	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
AdoMet_Synthase	PF01941.14	gi|385803955|ref|YP_005840355.1|	-	8e-178	590.9	7.9	9.1e-178	590.7	5.5	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	synthetase	(AdoMet	synthetase)
S-AdoMet_synt_N	PF00438.15	gi|385803955|ref|YP_005840355.1|	-	0.076	13.2	0.2	0.31	11.2	0.0	2.1	2	0	0	2	2	2	0	S-adenosylmethionine	synthetase,	N-terminal	domain
CYTH	PF01928.16	gi|385803956|ref|YP_005840356.1|	-	3.6e-38	131.1	2.6	4.1e-38	130.9	1.8	1.0	1	0	0	1	1	1	1	CYTH	domain
CAP_assoc_N	PF14504.1	gi|385803956|ref|YP_005840356.1|	-	0.043	13.5	0.1	0.14	11.8	0.0	1.8	1	1	0	2	2	2	0	CAP-associated	N-terminal
FKBP_C	PF00254.23	gi|385803957|ref|YP_005840357.1|	-	1.8e-08	34.2	0.0	4.8e-08	32.9	0.0	1.7	1	0	0	1	1	1	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
CbiA	PF01656.18	gi|385803958|ref|YP_005840358.1|	-	1.4e-19	70.3	0.0	2.1e-19	69.7	0.0	1.3	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.4	gi|385803958|ref|YP_005840358.1|	-	5.7e-05	22.9	0.3	0.0001	22.0	0.2	1.4	1	0	0	1	1	1	1	ParA/MinD	ATPase	like
AAA_26	PF13500.1	gi|385803958|ref|YP_005840358.1|	-	0.00013	21.5	0.1	0.21	11.1	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
AAA_31	PF13614.1	gi|385803958|ref|YP_005840358.1|	-	0.0075	16.2	0.0	0.05	13.5	0.0	2.1	1	1	0	2	2	2	1	AAA	domain
Zeta_toxin	PF06414.7	gi|385803958|ref|YP_005840358.1|	-	0.07	12.2	0.0	0.15	11.1	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
AAA_25	PF13481.1	gi|385803958|ref|YP_005840358.1|	-	0.11	11.8	0.2	0.61	9.4	0.1	2.1	2	0	0	2	2	2	0	AAA	domain
Fer4_NifH	PF00142.13	gi|385803958|ref|YP_005840358.1|	-	0.32	10.1	1.2	12	5.0	0.2	2.4	3	0	0	3	3	3	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
ArsA_ATPase	PF02374.10	gi|385803958|ref|YP_005840358.1|	-	2.8	6.9	4.1	2	7.3	1.4	1.7	2	0	0	2	2	2	0	Anion-transporting	ATPase
DUF964	PF06133.6	gi|385803959|ref|YP_005840359.1|	-	5.5e-22	77.8	6.8	6.3e-22	77.6	4.7	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF964)
Hanta_nucleocap	PF00846.13	gi|385803959|ref|YP_005840359.1|	-	0.0034	16.1	0.1	0.004	15.9	0.1	1.2	1	0	0	1	1	1	1	Hantavirus	nucleocapsid	protein
DUF3080	PF11279.3	gi|385803959|ref|YP_005840359.1|	-	0.013	14.6	2.4	0.015	14.4	1.6	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3080)
SH3BP5	PF05276.9	gi|385803959|ref|YP_005840359.1|	-	0.014	14.7	3.3	0.018	14.3	0.9	1.8	1	1	1	2	2	2	0	SH3	domain-binding	protein	5	(SH3BP5)
NPV_P10	PF05531.7	gi|385803959|ref|YP_005840359.1|	-	0.045	13.9	2.0	0.08	13.2	0.3	2.1	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
DUF641	PF04859.7	gi|385803959|ref|YP_005840359.1|	-	0.061	13.0	2.8	0.084	12.6	2.0	1.1	1	0	0	1	1	1	0	Plant	protein	of	unknown	function	(DUF641)
Mu-like_Pro	PF10123.4	gi|385803959|ref|YP_005840359.1|	-	0.097	12.1	7.6	0.12	11.8	5.3	1.0	1	0	0	1	1	1	0	Mu-like	prophage	I	protein
MRP-S27	PF10037.4	gi|385803959|ref|YP_005840359.1|	-	0.099	11.5	2.0	0.11	11.3	1.4	1.1	1	0	0	1	1	1	0	Mitochondrial	28S	ribosomal	protein	S27
Syntaxin_2	PF14523.1	gi|385803959|ref|YP_005840359.1|	-	0.14	12.2	1.0	0.28	11.2	0.7	1.7	1	1	0	1	1	1	0	Syntaxin-like	protein
Syntaxin-6_N	PF09177.6	gi|385803959|ref|YP_005840359.1|	-	0.22	11.9	3.2	1.4	9.3	1.5	2.3	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
OmpH	PF03938.9	gi|385803959|ref|YP_005840359.1|	-	0.63	9.9	8.1	0.85	9.5	5.6	1.2	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
Nif11	PF07862.6	gi|385803959|ref|YP_005840359.1|	-	0.67	9.9	3.4	0.5	10.3	0.2	2.3	2	1	0	2	2	2	0	Nitrogen	fixation	protein	of	unknown	function
Diphthamide_syn	PF01866.12	gi|385803961|ref|YP_005840361.1|	-	3.8e-93	312.1	0.0	4.4e-93	311.8	0.0	1.0	1	0	0	1	1	1	1	Putative	diphthamide	synthesis	protein
Lactamase_B_2	PF12706.2	gi|385803962|ref|YP_005840362.1|	-	5.6e-19	68.4	3.2	7e-19	68.1	2.2	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.1	gi|385803962|ref|YP_005840362.1|	-	6e-13	48.8	0.4	9.2e-13	48.2	0.3	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|385803962|ref|YP_005840362.1|	-	5.5e-05	22.8	13.6	0.00024	20.8	9.5	1.9	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
HisG	PF01634.13	gi|385803963|ref|YP_005840363.1|	-	0.005	16.4	0.1	0.011	15.3	0.1	1.7	1	1	0	1	1	1	1	ATP	phosphoribosyltransferase
PhoU	PF01895.14	gi|385803964|ref|YP_005840364.1|	-	2.2e-19	69.6	9.6	8.2e-15	55.0	3.1	2.5	2	0	0	2	2	2	2	PhoU	domain
Antitoxin-MazE	PF04014.13	gi|385803964|ref|YP_005840364.1|	-	1.4e-07	31.0	0.0	2.9e-07	30.0	0.0	1.5	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
PhoU_div	PF01865.11	gi|385803964|ref|YP_005840364.1|	-	0.013	14.6	1.6	0.023	13.8	1.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF47
Amidase	PF01425.16	gi|385803964|ref|YP_005840364.1|	-	0.037	12.8	0.2	0.047	12.5	0.2	1.1	1	0	0	1	1	1	0	Amidase
Phage_rep_org_N	PF09681.5	gi|385803964|ref|YP_005840364.1|	-	0.042	13.4	0.0	0.1	12.1	0.0	1.6	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
PhoU	PF01895.14	gi|385803965|ref|YP_005840365.1|	-	3e-06	27.5	0.1	0.0012	19.2	0.0	2.9	3	0	0	3	3	3	1	PhoU	domain
HTH_24	PF13412.1	gi|385803965|ref|YP_005840365.1|	-	0.0014	17.9	0.0	0.0027	17.0	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.1	gi|385803965|ref|YP_005840365.1|	-	0.0019	17.9	0.0	0.0055	16.4	0.0	1.8	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
MarR_2	PF12802.2	gi|385803965|ref|YP_005840365.1|	-	0.01	15.4	0.0	0.032	13.9	0.0	1.8	1	0	0	1	1	1	0	MarR	family
CBM_X	PF06204.6	gi|385803965|ref|YP_005840365.1|	-	0.016	14.6	0.0	0.043	13.2	0.0	1.7	1	0	0	1	1	1	0	Putative	carbohydrate	binding	domain
Rrf2	PF02082.15	gi|385803965|ref|YP_005840365.1|	-	0.054	13.6	0.0	0.17	12.0	0.0	1.9	1	0	0	1	1	1	0	Transcriptional	regulator
DMAP_binding	PF06464.6	gi|385803965|ref|YP_005840365.1|	-	0.096	13.2	0.7	0.2	12.2	0.5	1.5	1	0	0	1	1	1	0	DMAP1-binding	Domain
DUF515	PF04415.7	gi|385803965|ref|YP_005840365.1|	-	0.5	8.5	5.3	0.71	8.0	3.7	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF515)
Hexapep	PF00132.19	gi|385803966|ref|YP_005840366.1|	-	5.7e-14	50.8	3.2	2.3e-11	42.6	3.5	2.8	2	1	0	2	2	2	2	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.1	gi|385803966|ref|YP_005840366.1|	-	7e-10	38.2	1.8	1.2e-09	37.5	1.2	1.4	1	0	0	1	1	1	1	Hexapeptide	repeat	of	succinyl-transferase
ABC_tran	PF00005.22	gi|385803968|ref|YP_005840368.1|	-	1.6e-31	109.4	0.2	2.6e-31	108.7	0.2	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385803968|ref|YP_005840368.1|	-	1.3e-08	35.1	0.0	4.2e-06	26.9	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
DUF258	PF03193.11	gi|385803968|ref|YP_005840368.1|	-	1e-05	24.7	0.1	2.4e-05	23.5	0.1	1.7	1	1	0	1	1	1	1	Protein	of	unknown	function,	DUF258
SMC_N	PF02463.14	gi|385803968|ref|YP_005840368.1|	-	7.8e-05	22.0	0.2	0.003	16.8	0.2	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|385803968|ref|YP_005840368.1|	-	8e-05	21.8	0.0	0.23	10.4	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_29	PF13555.1	gi|385803968|ref|YP_005840368.1|	-	0.00036	20.0	0.0	0.00079	18.9	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|385803968|ref|YP_005840368.1|	-	0.00064	20.1	0.2	0.02	15.2	0.0	2.1	1	1	0	2	2	2	1	AAA	domain
AAA_30	PF13604.1	gi|385803968|ref|YP_005840368.1|	-	0.0027	17.3	0.4	0.01	15.4	0.3	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|385803968|ref|YP_005840368.1|	-	0.0029	17.6	1.6	0.0092	15.9	1.1	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|385803968|ref|YP_005840368.1|	-	0.0031	17.6	0.2	0.0066	16.5	0.1	1.6	1	1	0	1	1	1	1	AAA	domain
SbcCD_C	PF13558.1	gi|385803968|ref|YP_005840368.1|	-	0.0065	16.3	1.1	0.097	12.5	0.8	2.3	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
G-alpha	PF00503.15	gi|385803968|ref|YP_005840368.1|	-	0.017	13.8	0.0	0.018	13.7	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
Oxidored_FMN	PF00724.15	gi|385803968|ref|YP_005840368.1|	-	0.018	14.0	0.0	0.027	13.4	0.0	1.2	1	0	0	1	1	1	0	NADH:flavin	oxidoreductase	/	NADH	oxidase	family
MMR_HSR1	PF01926.18	gi|385803968|ref|YP_005840368.1|	-	0.02	14.8	0.1	3.9	7.4	0.0	2.4	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
Miro	PF08477.8	gi|385803968|ref|YP_005840368.1|	-	0.13	12.8	0.4	0.71	10.3	0.0	2.2	2	1	0	2	2	2	0	Miro-like	protein
Phosphonate-bd	PF12974.2	gi|385803969|ref|YP_005840369.1|	-	8.3e-37	126.8	0.1	1.1e-36	126.4	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
NMT1	PF09084.6	gi|385803969|ref|YP_005840369.1|	-	0.0081	15.7	0.0	0.015	14.8	0.0	1.5	1	0	0	1	1	1	1	NMT1/THI5	like
PhnG	PF06754.7	gi|385803970|ref|YP_005840370.1|	-	4.7e-15	55.4	0.2	5.6e-15	55.2	0.1	1.0	1	0	0	1	1	1	1	Phosphonate	metabolism	protein	PhnG
PhnI	PF05861.7	gi|385803970|ref|YP_005840370.1|	-	0.011	14.2	0.1	0.019	13.5	0.1	1.4	1	1	0	1	1	1	0	Bacterial	phosphonate	metabolism	protein	(PhnI)
PhnH	PF05845.7	gi|385803971|ref|YP_005840371.1|	-	1.8e-23	83.0	0.1	2.4e-23	82.6	0.1	1.1	1	0	0	1	1	1	1	Bacterial	phosphonate	metabolism	protein	(PhnH)
PhnI	PF05861.7	gi|385803972|ref|YP_005840372.1|	-	2.4e-137	457.2	0.0	2.8e-137	457.0	0.0	1.0	1	0	0	1	1	1	1	Bacterial	phosphonate	metabolism	protein	(PhnI)
PhnJ	PF06007.6	gi|385803973|ref|YP_005840373.1|	-	1.8e-134	446.8	0.0	2.2e-134	446.5	0.0	1.1	1	0	0	1	1	1	1	Phosphonate	metabolism	protein	PhnJ
ABC_tran	PF00005.22	gi|385803974|ref|YP_005840374.1|	-	1.7e-26	93.1	0.0	2.4e-26	92.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385803974|ref|YP_005840374.1|	-	1.1e-13	51.7	0.0	9.6e-12	45.4	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|385803974|ref|YP_005840374.1|	-	4.5e-06	26.2	0.9	1.3e-05	24.6	0.6	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|385803974|ref|YP_005840374.1|	-	4.6e-06	26.8	0.3	5.9e-05	23.2	0.2	2.1	1	1	0	1	1	1	1	AAA	domain
oligo_HPY	PF08352.7	gi|385803974|ref|YP_005840374.1|	-	9.6e-05	22.6	0.0	0.00029	21.1	0.0	1.8	2	0	0	2	2	2	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
SMC_N	PF02463.14	gi|385803974|ref|YP_005840374.1|	-	0.00093	18.4	0.7	0.67	9.1	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_10	PF12846.2	gi|385803974|ref|YP_005840374.1|	-	0.001	18.5	0.3	0.11	11.9	0.0	2.2	1	1	1	2	2	2	1	AAA-like	domain
AAA_16	PF13191.1	gi|385803974|ref|YP_005840374.1|	-	0.0028	17.6	0.2	0.0052	16.8	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_17	PF13207.1	gi|385803974|ref|YP_005840374.1|	-	0.0044	17.8	1.3	0.014	16.2	0.9	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.1	gi|385803974|ref|YP_005840374.1|	-	0.0054	15.8	0.0	0.28	10.1	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
SbcCD_C	PF13558.1	gi|385803974|ref|YP_005840374.1|	-	0.0086	15.9	0.0	0.033	14.0	0.0	2.0	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_18	PF13238.1	gi|385803974|ref|YP_005840374.1|	-	0.014	15.6	0.3	0.042	14.1	0.2	2.1	1	1	0	1	1	1	0	AAA	domain
Chitin_bind_4	PF00379.18	gi|385803974|ref|YP_005840374.1|	-	0.016	15.4	0.1	0.032	14.5	0.1	1.5	1	0	0	1	1	1	0	Insect	cuticle	protein
AAA_29	PF13555.1	gi|385803974|ref|YP_005840374.1|	-	0.021	14.3	0.1	0.049	13.1	0.1	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|385803974|ref|YP_005840374.1|	-	0.03	13.5	0.0	0.046	12.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
Miro	PF08477.8	gi|385803974|ref|YP_005840374.1|	-	0.034	14.6	0.0	0.092	13.2	0.0	1.7	2	0	0	2	2	1	0	Miro-like	protein
AAA_33	PF13671.1	gi|385803974|ref|YP_005840374.1|	-	0.039	13.8	0.8	0.48	10.3	0.6	2.3	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.24	gi|385803974|ref|YP_005840374.1|	-	0.039	14.1	0.3	1.2	9.3	0.2	2.3	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
IstB_IS21	PF01695.12	gi|385803974|ref|YP_005840374.1|	-	0.053	12.9	0.2	2.8	7.3	0.0	2.3	2	1	0	2	2	2	0	IstB-like	ATP	binding	protein
Propep_M14	PF02244.11	gi|385803974|ref|YP_005840374.1|	-	0.072	12.7	0.0	0.13	11.9	0.0	1.4	1	0	0	1	1	1	0	Carboxypeptidase	activation	peptide
DUF87	PF01935.12	gi|385803974|ref|YP_005840374.1|	-	0.09	12.5	0.8	0.33	10.7	0.1	2.1	2	1	0	2	2	2	0	Domain	of	unknown	function	DUF87
Zeta_toxin	PF06414.7	gi|385803974|ref|YP_005840374.1|	-	0.093	11.8	0.2	0.61	9.1	0.0	2.0	2	0	0	2	2	2	0	Zeta	toxin
MMR_HSR1	PF01926.18	gi|385803974|ref|YP_005840374.1|	-	0.14	12.1	0.0	0.33	10.9	0.0	1.9	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
ABC_tran	PF00005.22	gi|385803975|ref|YP_005840375.1|	-	3.6e-28	98.5	0.0	1.1e-27	96.9	0.0	1.8	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.1	gi|385803975|ref|YP_005840375.1|	-	3.9e-10	40.1	0.0	0.00054	20.0	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|385803975|ref|YP_005840375.1|	-	2.6e-06	26.8	0.1	0.0011	18.2	0.0	3.1	1	1	1	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.1	gi|385803975|ref|YP_005840375.1|	-	4.7e-06	26.7	0.1	9.3e-06	25.7	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_10	PF12846.2	gi|385803975|ref|YP_005840375.1|	-	6.9e-05	22.4	0.0	0.00014	21.4	0.0	1.4	1	1	0	1	1	1	1	AAA-like	domain
SbcCD_C	PF13558.1	gi|385803975|ref|YP_005840375.1|	-	0.00012	21.9	0.3	0.0022	17.8	0.1	3.0	2	1	0	2	2	2	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_15	PF13175.1	gi|385803975|ref|YP_005840375.1|	-	0.00056	19.0	0.0	0.03	13.3	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|385803975|ref|YP_005840375.1|	-	0.00096	19.3	0.3	0.014	15.5	0.2	2.6	1	1	0	1	1	1	1	AAA	domain
DUF258	PF03193.11	gi|385803975|ref|YP_005840375.1|	-	0.0011	18.2	0.0	0.0018	17.4	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_14	PF13173.1	gi|385803975|ref|YP_005840375.1|	-	0.0018	18.2	0.0	0.015	15.2	0.0	2.4	3	1	0	3	3	3	1	AAA	domain
Miro	PF08477.8	gi|385803975|ref|YP_005840375.1|	-	0.01	16.3	0.0	0.03	14.8	0.0	1.8	1	0	0	1	1	1	0	Miro-like	protein
Gtr1_RagA	PF04670.7	gi|385803975|ref|YP_005840375.1|	-	0.011	14.9	0.0	0.02	14.0	0.0	1.4	1	0	0	1	1	1	0	Gtr1/RagA	G	protein	conserved	region
AAA_29	PF13555.1	gi|385803975|ref|YP_005840375.1|	-	0.012	15.1	0.0	0.024	14.1	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.1	gi|385803975|ref|YP_005840375.1|	-	0.017	15.0	0.0	0.078	12.8	0.0	2.1	1	1	1	2	2	2	0	AAA	domain
AAA_30	PF13604.1	gi|385803975|ref|YP_005840375.1|	-	0.033	13.7	0.1	0.52	9.8	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.1	gi|385803975|ref|YP_005840375.1|	-	0.069	13.4	0.0	0.12	12.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.18	gi|385803975|ref|YP_005840375.1|	-	0.082	12.8	0.1	0.27	11.1	0.0	2.0	2	1	1	3	3	2	0	50S	ribosome-binding	GTPase
Amidohydro_4	PF13147.1	gi|385803976|ref|YP_005840376.1|	-	9e-22	78.3	9.3	4.3e-21	76.1	6.5	1.9	1	1	0	1	1	1	1	Amidohydrolase
Amidohydro_5	PF13594.1	gi|385803976|ref|YP_005840376.1|	-	8.7e-12	44.6	0.2	8.7e-12	44.6	0.1	2.9	2	1	1	3	3	3	1	Amidohydrolase
Amidohydro_1	PF01979.15	gi|385803976|ref|YP_005840376.1|	-	8.8e-07	28.8	5.0	2.8e-06	27.2	1.2	2.6	2	1	0	2	2	2	1	Amidohydrolase	family
Amidohydro_3	PF07969.6	gi|385803976|ref|YP_005840376.1|	-	1.7e-05	24.2	6.6	2.5e-05	23.6	0.8	2.7	1	1	0	2	2	2	1	Amidohydrolase	family
Urease_alpha	PF00449.15	gi|385803976|ref|YP_005840376.1|	-	0.028	14.5	2.4	0.48	10.5	0.6	2.3	2	0	0	2	2	2	0	Urease	alpha-subunit,	N-terminal	domain
ArdA	PF07275.6	gi|385803976|ref|YP_005840376.1|	-	0.075	13.2	0.1	0.14	12.4	0.1	1.4	1	0	0	1	1	1	0	Antirestriction	protein	(ArdA)
AP_endonuc_2	PF01261.19	gi|385803977|ref|YP_005840377.1|	-	3.9e-27	94.9	0.3	4.8e-27	94.6	0.2	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
DUF318	PF03773.8	gi|385803978|ref|YP_005840378.1|	-	4.3e-60	203.2	13.8	5e-60	203.0	9.5	1.0	1	0	0	1	1	1	1	Predicted	permease
HTH_20	PF12840.2	gi|385803979|ref|YP_005840379.1|	-	7.7e-15	54.4	0.4	1.3e-14	53.6	0.1	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|385803979|ref|YP_005840379.1|	-	7.6e-12	44.7	0.1	1.4e-11	43.8	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.14	gi|385803979|ref|YP_005840379.1|	-	0.00034	20.2	0.0	0.00069	19.2	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.1	gi|385803979|ref|YP_005840379.1|	-	0.0046	17.2	0.2	0.13	12.5	0.0	2.2	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
DUF4123	PF13503.1	gi|385803979|ref|YP_005840379.1|	-	0.0056	16.6	0.0	0.0083	16.0	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4123)
HTH_24	PF13412.1	gi|385803979|ref|YP_005840379.1|	-	0.051	12.9	0.1	0.21	10.9	0.0	2.2	2	1	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Penicillinase_R	PF03965.11	gi|385803979|ref|YP_005840379.1|	-	0.067	13.2	0.1	0.19	11.8	0.0	1.7	1	1	0	2	2	2	0	Penicillinase	repressor
DUF742	PF05331.6	gi|385803979|ref|YP_005840379.1|	-	0.07	12.7	0.1	0.085	12.4	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
TFIIE_alpha	PF02002.12	gi|385803979|ref|YP_005840379.1|	-	0.074	12.5	0.2	0.54	9.7	0.0	2.0	1	1	1	2	2	2	0	TFIIE	alpha	subunit
NOC3p	PF07540.6	gi|385803979|ref|YP_005840379.1|	-	0.1	12.8	0.0	0.25	11.6	0.0	1.6	1	1	0	1	1	1	0	Nucleolar	complex-associated	protein
Gluconate_2-dh3	PF13618.1	gi|385803979|ref|YP_005840379.1|	-	0.12	12.5	0.0	0.14	12.3	0.0	1.2	1	0	0	1	1	1	0	Gluconate	2-dehydrogenase	subunit	3
MgtE_N	PF03448.12	gi|385803979|ref|YP_005840379.1|	-	0.18	12.1	0.9	1.7	8.9	0.4	2.4	1	1	0	1	1	1	0	MgtE	intracellular	N	domain
Phage_integrase	PF00589.17	gi|385803980|ref|YP_005840380.1|	-	1.9e-14	53.6	0.0	4.3e-14	52.5	0.0	1.6	1	0	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.1	gi|385803980|ref|YP_005840380.1|	-	8.6e-07	29.2	0.9	4.3e-06	26.9	0.6	2.1	1	1	1	2	2	2	2	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_1	PF02899.12	gi|385803980|ref|YP_005840380.1|	-	1.8e-06	27.9	4.2	0.00053	20.0	2.4	3.3	2	1	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Rrf2	PF02082.15	gi|385803981|ref|YP_005840381.1|	-	0.0035	17.4	0.0	0.01	15.9	0.0	1.7	2	0	0	2	2	2	1	Transcriptional	regulator
ELL	PF10390.4	gi|385803981|ref|YP_005840381.1|	-	0.01	15.0	0.3	0.012	14.8	0.2	1.1	1	0	0	1	1	1	0	RNA	polymerase	II	elongation	factor	ELL
FtsH_ext	PF06480.10	gi|385803981|ref|YP_005840381.1|	-	0.015	15.4	1.3	0.025	14.7	0.9	1.4	1	0	0	1	1	1	0	FtsH	Extracellular
Prismane	PF03063.15	gi|385803981|ref|YP_005840381.1|	-	0.082	11.2	1.5	0.29	9.4	1.0	1.8	1	1	0	1	1	1	0	Prismane/CO	dehydrogenase	family
DUF3527	PF12043.3	gi|385803981|ref|YP_005840381.1|	-	0.13	11.7	1.9	0.18	11.3	1.3	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3527)
Iron_transport	PF10634.4	gi|385803982|ref|YP_005840382.1|	-	5.4e-05	23.1	0.0	0.0012	18.7	0.0	2.2	2	0	0	2	2	2	1	Fe2+	transport	protein
HTH_24	PF13412.1	gi|385803983|ref|YP_005840383.1|	-	1.3e-15	56.4	0.2	5.8e-11	41.6	0.0	2.3	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|385803983|ref|YP_005840383.1|	-	2.8e-14	52.6	0.8	2.5e-08	33.6	0.0	2.2	2	0	0	2	2	2	2	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|385803983|ref|YP_005840383.1|	-	7.9e-13	47.8	0.2	2.2e-07	30.4	0.0	2.2	2	0	0	2	2	2	2	MarR	family
HTH_AsnC-type	PF13404.1	gi|385803983|ref|YP_005840383.1|	-	2.4e-08	33.3	0.9	4.1e-05	23.0	0.0	2.9	2	0	0	2	2	2	2	AsnC-type	helix-turn-helix	domain
HTH_5	PF01022.15	gi|385803983|ref|YP_005840383.1|	-	4.5e-08	32.6	0.0	3.6e-07	29.7	0.0	2.0	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.17	gi|385803983|ref|YP_005840383.1|	-	1.8e-07	30.7	0.0	0.00025	20.6	0.0	2.2	2	0	0	2	2	2	2	MarR	family
HTH_10	PF04967.7	gi|385803983|ref|YP_005840383.1|	-	1.3e-05	24.6	0.0	0.0055	16.2	0.0	3.0	3	0	0	3	3	3	1	HTH	DNA	binding	domain
TrmB	PF01978.14	gi|385803983|ref|YP_005840383.1|	-	3.7e-05	23.3	0.0	0.0031	17.1	0.0	2.5	2	1	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|385803983|ref|YP_005840383.1|	-	0.00022	20.7	0.0	0.0014	18.1	0.0	2.0	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
Sigma70_r4_2	PF08281.7	gi|385803983|ref|YP_005840383.1|	-	0.00034	20.0	0.0	0.00074	18.9	0.0	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_34	PF13601.1	gi|385803983|ref|YP_005840383.1|	-	0.00093	19.1	0.0	0.6	10.1	0.0	2.2	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
GerE	PF00196.14	gi|385803983|ref|YP_005840383.1|	-	0.0016	17.7	0.0	0.018	14.3	0.0	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	luxR	family
DUF2513	PF10711.4	gi|385803983|ref|YP_005840383.1|	-	0.0016	18.4	0.0	0.3	11.1	0.0	2.7	2	1	1	3	3	3	1	Hypothetical	protein	(DUF2513)
HTH_27	PF13463.1	gi|385803983|ref|YP_005840383.1|	-	0.0016	18.7	0.0	0.079	13.2	0.0	2.4	2	1	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_38	PF13936.1	gi|385803983|ref|YP_005840383.1|	-	0.0019	17.6	1.4	0.0068	15.9	0.0	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
LexA_DNA_bind	PF01726.11	gi|385803983|ref|YP_005840383.1|	-	0.0037	16.7	0.0	0.073	12.6	0.0	2.3	2	0	0	2	2	2	1	LexA	DNA	binding	domain
HTH_30	PF13556.1	gi|385803983|ref|YP_005840383.1|	-	0.0039	16.7	0.1	0.013	15.0	0.0	2.0	2	0	0	2	2	1	1	PucR	C-terminal	helix-turn-helix	domain
HTH_23	PF13384.1	gi|385803983|ref|YP_005840383.1|	-	0.0061	16.1	0.0	0.021	14.4	0.0	1.9	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_11	PF08279.7	gi|385803983|ref|YP_005840383.1|	-	0.0097	15.5	0.1	0.037	13.6	0.0	2.0	3	0	0	3	3	2	1	HTH	domain
HTH_40	PF14493.1	gi|385803983|ref|YP_005840383.1|	-	0.02	15.1	0.1	0.14	12.3	0.0	2.1	1	1	1	2	2	2	0	Helix-turn-helix	domain
HTH_7	PF02796.10	gi|385803983|ref|YP_005840383.1|	-	0.029	14.2	0.1	0.082	12.7	0.0	1.8	2	0	0	2	2	1	0	Helix-turn-helix	domain	of	resolvase
Fe_dep_repress	PF01325.14	gi|385803983|ref|YP_005840383.1|	-	0.034	14.0	0.0	0.17	11.8	0.0	2.0	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DUF4423	PF14394.1	gi|385803983|ref|YP_005840383.1|	-	0.034	13.6	0.0	0.21	11.0	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4423)
HTH_DeoR	PF08220.7	gi|385803983|ref|YP_005840383.1|	-	0.037	13.5	0.0	0.099	12.2	0.0	1.7	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_29	PF13551.1	gi|385803983|ref|YP_005840383.1|	-	0.044	13.9	0.7	2.6	8.2	0.0	2.2	1	1	1	2	2	2	0	Winged	helix-turn	helix
HTH_28	PF13518.1	gi|385803983|ref|YP_005840383.1|	-	0.045	13.7	0.0	0.13	12.2	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
FaeA	PF04703.7	gi|385803983|ref|YP_005840383.1|	-	0.049	13.8	0.1	0.33	11.1	0.0	2.0	2	0	0	2	2	2	0	FaeA-like	protein
UTRA	PF07702.8	gi|385803983|ref|YP_005840383.1|	-	0.055	13.0	1.2	0.52	9.9	0.8	2.1	1	1	0	1	1	1	0	UTRA	domain
Terminase_5	PF06056.7	gi|385803983|ref|YP_005840383.1|	-	0.082	12.4	0.0	0.2	11.2	0.0	1.6	1	0	0	1	1	1	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
CENP-B_N	PF04218.8	gi|385803983|ref|YP_005840383.1|	-	0.1	12.0	0.0	1.3	8.5	0.0	2.4	2	1	0	2	2	2	0	CENP-B	N-terminal	DNA-binding	domain
Sigma70_r4	PF04545.11	gi|385803983|ref|YP_005840383.1|	-	0.11	11.8	0.9	0.34	10.2	0.0	2.4	2	2	0	2	2	2	0	Sigma-70,	region	4
RP-C	PF03428.8	gi|385803983|ref|YP_005840383.1|	-	0.11	11.8	0.4	0.35	10.3	0.0	1.9	2	1	0	2	2	2	0	Replication	protein	C	N-terminal	domain
HTH_8	PF02954.14	gi|385803983|ref|YP_005840383.1|	-	0.19	11.3	0.7	1.9	8.1	0.0	2.7	3	0	0	3	3	3	0	Bacterial	regulatory	protein,	Fis	family
PQQ_2	PF13360.1	gi|385803985|ref|YP_005840385.1|	-	2.5e-17	63.1	12.1	3.9e-09	36.3	1.5	3.0	1	1	2	3	3	3	3	PQQ-like	domain
PQQ	PF01011.16	gi|385803985|ref|YP_005840385.1|	-	6e-14	50.7	2.7	0.00013	21.2	0.0	5.9	5	1	0	5	5	5	3	PQQ	enzyme	repeat
FG-GAP	PF01839.18	gi|385803985|ref|YP_005840385.1|	-	1.4e-09	37.3	19.9	0.0016	18.0	0.0	5.9	6	0	0	6	6	6	4	FG-GAP	repeat
BBS2_Mid	PF14783.1	gi|385803985|ref|YP_005840385.1|	-	8.9e-08	31.8	0.2	0.00038	20.2	0.0	3.7	3	1	0	3	3	3	2	Ciliary	BBSome	complex	subunit	2,	middle	region
VCBS	PF13517.1	gi|385803985|ref|YP_005840385.1|	-	1.4e-07	31.7	21.9	0.00043	20.5	0.0	5.6	2	1	4	6	6	6	4	Repeat	domain	in	Vibrio,	Colwellia,	Bradyrhizobium	and	Shewanella
PQQ_3	PF13570.1	gi|385803985|ref|YP_005840385.1|	-	0.0014	18.8	28.4	0.25	11.6	0.1	7.8	7	3	1	8	8	8	3	PQQ-like	domain
PepSY_2	PF13670.1	gi|385803985|ref|YP_005840385.1|	-	0.11	12.4	0.8	19	5.2	0.1	3.1	3	0	0	3	3	3	0	Peptidase	propeptide	and	YPEB	domain
QueC	PF06508.8	gi|385803986|ref|YP_005840386.1|	-	0.14	11.3	0.0	0.25	10.6	0.0	1.3	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
TAT_signal	PF10518.4	gi|385803988|ref|YP_005840388.1|	-	0.046	13.7	0.1	0.15	12.0	0.1	1.9	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
SnoaL_4	PF13577.1	gi|385803988|ref|YP_005840388.1|	-	0.15	11.9	2.3	2.5	7.9	0.1	2.6	2	0	0	2	2	2	0	SnoaL-like	domain
HTH_24	PF13412.1	gi|385803989|ref|YP_005840389.1|	-	4.6e-15	54.7	0.3	6.6e-15	54.2	0.2	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|385803989|ref|YP_005840389.1|	-	1.1e-12	47.2	2.5	2.1e-12	46.3	1.8	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_20	PF12840.2	gi|385803989|ref|YP_005840389.1|	-	2e-08	33.9	0.0	3.5e-08	33.1	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|385803989|ref|YP_005840389.1|	-	3.5e-07	29.7	0.0	7.1e-07	28.8	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.5	gi|385803989|ref|YP_005840389.1|	-	4.9e-06	26.0	0.0	9e-06	25.1	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.7	gi|385803989|ref|YP_005840389.1|	-	6.9e-06	25.6	0.1	1.1e-05	25.0	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
Rrf2	PF02082.15	gi|385803989|ref|YP_005840389.1|	-	0.00011	22.2	0.0	0.00023	21.2	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
Sigma70_r4_2	PF08281.7	gi|385803989|ref|YP_005840389.1|	-	0.00014	21.2	0.1	0.00025	20.4	0.0	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_27	PF13463.1	gi|385803989|ref|YP_005840389.1|	-	0.00015	22.0	0.1	0.00038	20.7	0.0	1.7	2	0	0	2	2	1	1	Winged	helix	DNA-binding	domain
HTH_DeoR	PF08220.7	gi|385803989|ref|YP_005840389.1|	-	0.00024	20.5	0.2	0.0052	16.2	0.0	2.2	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
HTH_5	PF01022.15	gi|385803989|ref|YP_005840389.1|	-	0.00077	19.0	0.0	0.0013	18.3	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Fe_dep_repress	PF01325.14	gi|385803989|ref|YP_005840389.1|	-	0.0013	18.6	0.0	0.0022	17.8	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_36	PF13730.1	gi|385803989|ref|YP_005840389.1|	-	0.0013	18.8	0.0	0.0019	18.2	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_CodY	PF08222.6	gi|385803989|ref|YP_005840389.1|	-	0.0016	17.6	0.3	0.0031	16.7	0.2	1.4	1	0	0	1	1	1	1	CodY	helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.1	gi|385803989|ref|YP_005840389.1|	-	0.0022	17.1	0.3	0.0046	16.0	0.2	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
MarR	PF01047.17	gi|385803989|ref|YP_005840389.1|	-	0.0032	17.1	0.0	0.0052	16.4	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_38	PF13936.1	gi|385803989|ref|YP_005840389.1|	-	0.0045	16.5	0.3	0.0083	15.6	0.2	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|385803989|ref|YP_005840389.1|	-	0.0055	16.3	0.0	0.01	15.4	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_23	PF13384.1	gi|385803989|ref|YP_005840389.1|	-	0.0083	15.7	0.1	0.015	14.9	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_28	PF13518.1	gi|385803989|ref|YP_005840389.1|	-	0.014	15.3	0.0	0.027	14.4	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HrcA_DNA-bdg	PF03444.10	gi|385803989|ref|YP_005840389.1|	-	0.024	14.0	0.0	0.043	13.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
HTH_34	PF13601.1	gi|385803989|ref|YP_005840389.1|	-	0.024	14.6	0.0	0.042	13.8	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.1	gi|385803989|ref|YP_005840389.1|	-	0.048	13.4	0.1	0.092	12.5	0.1	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
GntR	PF00392.16	gi|385803989|ref|YP_005840389.1|	-	0.1	12.0	0.0	0.25	10.8	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
RepL	PF05732.6	gi|385803989|ref|YP_005840389.1|	-	0.1	11.7	0.0	0.16	11.1	0.0	1.3	1	0	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
HTH_Mga	PF08280.6	gi|385803989|ref|YP_005840389.1|	-	0.11	12.3	0.0	0.16	11.7	0.0	1.3	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
RP-C	PF03428.8	gi|385803989|ref|YP_005840389.1|	-	0.11	11.9	0.1	0.27	10.6	0.0	1.6	1	1	1	2	2	2	0	Replication	protein	C	N-terminal	domain
HTH_1	PF00126.22	gi|385803989|ref|YP_005840389.1|	-	0.11	12.2	0.2	0.2	11.3	0.1	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
DUF4423	PF14394.1	gi|385803989|ref|YP_005840389.1|	-	0.12	11.9	0.0	0.2	11.1	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HTH_10	PF04967.7	gi|385803989|ref|YP_005840389.1|	-	0.12	11.9	0.1	0.22	11.1	0.1	1.3	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_29	PF13551.1	gi|385803989|ref|YP_005840389.1|	-	0.13	12.4	0.0	0.19	11.9	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn	helix
Phage_pRha	PF09669.5	gi|385803989|ref|YP_005840389.1|	-	0.15	12.4	0.0	0.21	11.9	0.0	1.2	1	0	0	1	1	1	0	Phage	regulatory	protein	Rha	(Phage_pRha)
Amidohydro_1	PF01979.15	gi|385803990|ref|YP_005840390.1|	-	8.8e-22	78.1	3.0	3.8e-20	72.8	2.1	2.0	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_4	PF13147.1	gi|385803990|ref|YP_005840390.1|	-	8.8e-08	32.4	10.1	5.3e-07	29.9	7.0	1.9	1	1	0	1	1	1	1	Amidohydrolase
A_deaminase	PF00962.17	gi|385803990|ref|YP_005840390.1|	-	3.6e-07	29.3	0.1	5.2e-07	28.8	0.1	1.1	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
Amidohydro_5	PF13594.1	gi|385803990|ref|YP_005840390.1|	-	3.7e-05	23.4	0.0	8.2e-05	22.3	0.0	1.6	1	0	0	1	1	1	1	Amidohydrolase
Amidohydro_3	PF07969.6	gi|385803990|ref|YP_005840390.1|	-	0.076	12.2	9.7	0.17	11.0	2.7	2.8	1	1	0	2	2	2	0	Amidohydrolase	family
Oxidored_q1	PF00361.15	gi|385803991|ref|YP_005840391.1|	-	2.9e-33	115.2	18.2	2.9e-33	115.2	12.6	2.9	2	1	1	3	3	3	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Oxidored_q1_N	PF00662.15	gi|385803991|ref|YP_005840391.1|	-	6.3e-06	25.6	0.0	6.3e-06	25.6	0.0	3.1	2	1	1	3	3	3	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
DUF4366	PF14283.1	gi|385803991|ref|YP_005840391.1|	-	0.18	11.1	0.0	0.37	10.1	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4366)
DUF2309	PF10070.4	gi|529167405|ref|YP_005840392.2|	-	6.5e-258	857.9	0.0	7.7e-258	857.7	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2309)
DUF159	PF02586.9	gi|385803993|ref|YP_005840393.1|	-	6.8e-59	198.8	0.0	7.8e-59	198.6	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	ACR,	COG2135
RNase_H_2	PF13482.1	gi|385803994|ref|YP_005840394.1|	-	8.3e-36	123.2	0.0	1.1e-35	122.9	0.0	1.1	1	0	0	1	1	1	1	RNase_H	superfamily
DNA_pol_A_exo1	PF01612.15	gi|385803994|ref|YP_005840394.1|	-	0.00062	19.2	0.0	0.0013	18.2	0.0	1.6	1	1	0	1	1	1	1	3'-5'	exonuclease
DNA_pol_B_exo2	PF10108.4	gi|385803994|ref|YP_005840394.1|	-	0.028	13.9	0.1	0.47	9.9	0.0	2.1	2	0	0	2	2	2	0	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
Glycos_transf_2	PF00535.21	gi|385803995|ref|YP_005840395.1|	-	1.1e-20	73.9	0.0	1.4e-20	73.6	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|385803995|ref|YP_005840395.1|	-	1.2e-09	38.3	0.1	1.5e-09	38.0	0.1	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.1	gi|385803995|ref|YP_005840395.1|	-	0.004	16.4	0.0	0.0057	15.9	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
NTP_transf_3	PF12804.2	gi|385803995|ref|YP_005840395.1|	-	0.019	15.0	0.1	0.035	14.1	0.1	1.5	1	1	1	2	2	2	0	MobA-like	NTP	transferase	domain
Bactofilin	PF04519.8	gi|529167406|ref|YP_005840397.2|	-	1e-10	41.5	5.5	6.8e-08	32.4	0.1	3.8	2	2	1	3	3	3	2	Polymer-forming	cytoskeletal
Hexapep	PF00132.19	gi|529167406|ref|YP_005840397.2|	-	9.8e-07	28.0	8.4	0.035	13.6	0.0	6.1	4	2	1	6	6	6	3	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.1	gi|529167406|ref|YP_005840397.2|	-	0.001	18.5	8.2	0.18	11.3	0.1	4.2	3	1	0	3	3	3	2	Hexapeptide	repeat	of	succinyl-transferase
DUF3494	PF11999.3	gi|529167406|ref|YP_005840397.2|	-	0.0019	17.8	0.1	0.013	15.1	0.1	2.2	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF3494)
MMR_HSR1_C	PF08438.5	gi|385803998|ref|YP_005840398.1|	-	5e-31	107.1	0.1	8.3e-31	106.4	0.1	1.4	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.18	gi|385803998|ref|YP_005840398.1|	-	3.3e-16	59.2	0.0	1e-15	57.7	0.0	2.0	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
TGS	PF02824.16	gi|385803998|ref|YP_005840398.1|	-	1.9e-12	46.8	0.0	5.2e-12	45.4	0.0	1.7	2	0	0	2	2	2	1	TGS	domain
FeoB_N	PF02421.13	gi|385803998|ref|YP_005840398.1|	-	4.5e-10	39.0	0.1	6.3e-08	32.0	0.0	2.7	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
Miro	PF08477.8	gi|385803998|ref|YP_005840398.1|	-	0.031	14.7	0.0	1	9.8	0.0	2.6	2	1	0	2	2	2	0	Miro-like	protein
NOG1	PF06858.9	gi|385803998|ref|YP_005840398.1|	-	0.15	11.9	0.0	0.33	10.8	0.0	1.5	1	0	0	1	1	1	0	Nucleolar	GTP-binding	protein	1	(NOG1)
Aminotran_1_2	PF00155.16	gi|385803999|ref|YP_005840399.1|	-	2e-61	207.9	0.0	2.2e-61	207.8	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.12	gi|385803999|ref|YP_005840399.1|	-	2.7e-13	49.7	0.2	4.1e-13	49.1	0.1	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.16	gi|385803999|ref|YP_005840399.1|	-	2.6e-10	39.9	0.0	4.2e-10	39.2	0.0	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_5	PF00266.14	gi|385803999|ref|YP_005840399.1|	-	2.2e-08	33.2	0.0	2.9e-08	32.8	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.15	gi|385803999|ref|YP_005840399.1|	-	5.1e-07	28.3	0.0	7.1e-07	27.8	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
NMT1_2	PF13379.1	gi|385804000|ref|YP_005840400.1|	-	2e-29	102.7	0.0	2.7e-29	102.3	0.0	1.1	1	0	0	1	1	1	1	NMT1-like	family
NMT1	PF09084.6	gi|385804000|ref|YP_005840400.1|	-	1.2e-05	25.0	0.0	6.2e-05	22.6	0.0	1.9	1	1	0	1	1	1	1	NMT1/THI5	like
Phosphonate-bd	PF12974.2	gi|385804000|ref|YP_005840400.1|	-	0.001	18.4	0.0	0.0015	17.9	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
DUF4621	PF15414.1	gi|385804000|ref|YP_005840400.1|	-	0.03	13.0	0.1	0.051	12.2	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4621)
TAT_signal	PF10518.4	gi|385804000|ref|YP_005840400.1|	-	0.039	13.9	1.9	0.13	12.3	1.3	1.9	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.17	gi|385804001|ref|YP_005840401.1|	-	1.4e-20	73.6	9.7	1.4e-20	73.6	6.7	1.9	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.22	gi|385804002|ref|YP_005840402.1|	-	2.8e-34	118.3	0.0	4.6e-34	117.6	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385804002|ref|YP_005840402.1|	-	1.1e-06	28.8	0.0	0.0077	16.2	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|385804002|ref|YP_005840402.1|	-	4.9e-06	26.6	0.0	7.5e-06	26.0	0.0	1.3	1	0	0	1	1	1	1	AAA	ATPase	domain
DUF258	PF03193.11	gi|385804002|ref|YP_005840402.1|	-	7.6e-05	21.9	0.0	0.00013	21.2	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_28	PF13521.1	gi|385804002|ref|YP_005840402.1|	-	0.00043	20.2	0.1	0.03	14.2	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.24	gi|385804002|ref|YP_005840402.1|	-	0.00057	20.0	0.3	0.0023	18.1	0.2	2.2	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
IstB_IS21	PF01695.12	gi|385804002|ref|YP_005840402.1|	-	0.0022	17.4	0.0	0.0039	16.6	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_29	PF13555.1	gi|385804002|ref|YP_005840402.1|	-	0.0033	16.8	0.0	0.0081	15.6	0.0	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
PduV-EutP	PF10662.4	gi|385804002|ref|YP_005840402.1|	-	0.0035	16.8	0.0	0.0097	15.4	0.0	1.7	1	0	0	1	1	1	1	Ethanolamine	utilisation	-	propanediol	utilisation
DEAD	PF00270.24	gi|385804002|ref|YP_005840402.1|	-	0.0047	16.4	0.0	0.52	9.7	0.0	2.7	1	1	1	2	2	2	1	DEAD/DEAH	box	helicase
AAA_5	PF07728.9	gi|385804002|ref|YP_005840402.1|	-	0.0052	16.5	0.1	0.012	15.3	0.0	1.6	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
ATP-synt_ab	PF00006.20	gi|385804002|ref|YP_005840402.1|	-	0.0083	15.6	0.0	0.014	14.8	0.0	1.5	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_25	PF13481.1	gi|385804002|ref|YP_005840402.1|	-	0.0093	15.3	0.5	0.059	12.7	0.0	2.3	2	1	1	3	3	3	1	AAA	domain
AAA_22	PF13401.1	gi|385804002|ref|YP_005840402.1|	-	0.011	15.8	0.1	0.031	14.4	0.1	1.8	2	0	0	2	2	1	0	AAA	domain
AAA_23	PF13476.1	gi|385804002|ref|YP_005840402.1|	-	0.012	15.9	0.0	0.021	15.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|385804002|ref|YP_005840402.1|	-	0.014	15.3	0.2	0.025	14.4	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
Arch_ATPase	PF01637.13	gi|385804002|ref|YP_005840402.1|	-	0.014	15.0	0.0	0.047	13.3	0.0	1.8	2	0	0	2	2	2	0	Archaeal	ATPase
AAA_18	PF13238.1	gi|385804002|ref|YP_005840402.1|	-	0.015	15.5	0.1	0.14	12.4	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.17	gi|385804002|ref|YP_005840402.1|	-	0.016	14.1	0.0	0.032	13.1	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
AAA_17	PF13207.1	gi|385804002|ref|YP_005840402.1|	-	0.016	16.0	0.1	0.039	14.7	0.1	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_30	PF13604.1	gi|385804002|ref|YP_005840402.1|	-	0.016	14.7	0.0	0.089	12.3	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_19	PF13245.1	gi|385804002|ref|YP_005840402.1|	-	0.019	14.7	0.6	0.18	11.5	0.1	2.6	2	0	0	2	2	2	0	Part	of	AAA	domain
NACHT	PF05729.7	gi|385804002|ref|YP_005840402.1|	-	0.021	14.4	0.0	0.041	13.5	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
UPF0079	PF02367.12	gi|385804002|ref|YP_005840402.1|	-	0.029	14.0	0.0	0.054	13.1	0.0	1.4	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_14	PF13173.1	gi|385804002|ref|YP_005840402.1|	-	0.031	14.1	0.1	0.32	10.9	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.18	gi|385804002|ref|YP_005840402.1|	-	0.095	12.6	0.1	0.3	11.0	0.0	2.2	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
RuvB_N	PF05496.7	gi|385804002|ref|YP_005840402.1|	-	0.1	11.6	0.0	0.18	10.7	0.0	1.5	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_24	PF13479.1	gi|385804002|ref|YP_005840402.1|	-	0.11	12.0	0.4	1.5	8.3	0.0	2.5	3	0	0	3	3	3	0	AAA	domain
Rad17	PF03215.10	gi|385804002|ref|YP_005840402.1|	-	0.13	10.9	0.0	0.17	10.5	0.0	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
RNA_helicase	PF00910.17	gi|385804002|ref|YP_005840402.1|	-	0.14	12.3	0.0	0.29	11.3	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
AAA_15	PF13175.1	gi|385804002|ref|YP_005840402.1|	-	0.15	11.0	0.0	2.6	6.9	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
ResIII	PF04851.10	gi|385804004|ref|YP_005840404.1|	-	1.1e-28	100.3	0.3	2.4e-26	92.6	0.0	3.1	2	1	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.26	gi|385804004|ref|YP_005840404.1|	-	2.7e-17	62.4	0.8	6.3e-17	61.2	0.2	1.9	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.24	gi|385804004|ref|YP_005840404.1|	-	4.1e-11	42.6	0.0	1.2e-10	41.1	0.0	1.9	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
DUF2075	PF09848.4	gi|385804004|ref|YP_005840404.1|	-	0.00072	18.6	0.2	0.0033	16.4	0.1	2.0	1	1	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
Helicase_C_2	PF13307.1	gi|385804004|ref|YP_005840404.1|	-	0.0023	17.8	0.1	0.035	14.0	0.0	2.7	3	0	0	3	3	3	1	Helicase	C-terminal	domain
AAA_30	PF13604.1	gi|385804004|ref|YP_005840404.1|	-	0.008	15.7	0.0	0.016	14.7	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|385804004|ref|YP_005840404.1|	-	0.051	13.7	0.0	0.41	10.8	0.0	2.4	2	1	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.12	gi|385804004|ref|YP_005840404.1|	-	0.052	12.9	0.0	0.39	10.1	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
DUF790	PF05626.6	gi|385804005|ref|YP_005840405.1|	-	6.9e-118	393.4	0.3	9e-118	393.0	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF790)
Nol1_Nop2_Fmu_2	PF13636.1	gi|385804006|ref|YP_005840406.1|	-	8.1e-17	61.1	0.0	1e-16	60.8	0.0	1.1	1	0	0	1	1	1	1	pre-rRNA	processing	and	ribosome	biogenesis
Nol1_Nop2_Fmu	PF01189.12	gi|385804007|ref|YP_005840407.1|	-	2.6e-47	161.5	0.0	3.2e-47	161.2	0.0	1.0	1	0	0	1	1	1	1	NOL1/NOP2/sun	family
Methyltransf_31	PF13847.1	gi|385804007|ref|YP_005840407.1|	-	4.7e-06	26.2	0.0	7.5e-06	25.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|385804007|ref|YP_005840407.1|	-	1.2e-05	25.8	0.0	1.9e-05	25.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|385804007|ref|YP_005840407.1|	-	4.5e-05	23.4	0.1	0.00016	21.6	0.1	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
FtsJ	PF01728.14	gi|385804007|ref|YP_005840407.1|	-	0.022	14.7	0.0	0.037	14.0	0.0	1.3	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
Methyltransf_15	PF09445.5	gi|385804007|ref|YP_005840407.1|	-	0.12	11.9	0.0	0.18	11.3	0.0	1.5	1	1	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
PAC2	PF09754.4	gi|385804008|ref|YP_005840408.1|	-	7.3e-43	146.9	0.1	8.3e-43	146.7	0.1	1.0	1	0	0	1	1	1	1	PAC2	family
GrpE	PF01025.14	gi|385804009|ref|YP_005840409.1|	-	4.1e-33	114.2	14.0	4.1e-33	114.2	9.7	2.6	2	1	0	2	2	2	1	GrpE
CENP-Q	PF13094.1	gi|385804009|ref|YP_005840409.1|	-	0.001	19.0	5.5	0.001	19.0	3.8	2.9	2	1	1	3	3	3	1	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
KH_1	PF00013.24	gi|385804009|ref|YP_005840409.1|	-	0.058	13.0	0.0	0.15	11.6	0.0	1.7	1	0	0	1	1	1	0	KH	domain
Tho2	PF11262.3	gi|385804009|ref|YP_005840409.1|	-	0.11	11.5	3.2	0.21	10.6	2.2	1.5	1	0	0	1	1	1	0	Transcription	factor/nuclear	export	subunit	protein	2
DUF1423	PF07227.6	gi|385804009|ref|YP_005840409.1|	-	0.3	9.7	7.7	0.48	9.0	5.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1423)
ApoO	PF09769.4	gi|385804009|ref|YP_005840409.1|	-	0.59	9.8	3.3	1.2	8.8	2.3	1.5	1	0	0	1	1	1	0	Apolipoprotein	O
Atg14	PF10186.4	gi|385804009|ref|YP_005840409.1|	-	1.2	7.9	9.5	2.2	7.1	6.6	1.4	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Sugarporin_N	PF11471.3	gi|385804009|ref|YP_005840409.1|	-	7.2	6.3	6.8	17	5.1	4.7	1.6	1	0	0	1	1	1	0	Maltoporin	periplasmic	N-terminal	extension
HSP70	PF00012.15	gi|385804010|ref|YP_005840410.1|	-	2.5e-237	788.6	15.6	9.1e-209	694.2	8.3	2.0	1	1	1	2	2	2	2	Hsp70	protein
MreB_Mbl	PF06723.8	gi|385804010|ref|YP_005840410.1|	-	3.9e-18	65.1	0.3	3.9e-18	65.1	0.2	2.5	2	1	0	2	2	2	1	MreB/Mbl	protein
FGGY_C	PF02782.11	gi|385804010|ref|YP_005840410.1|	-	0.0017	17.9	0.0	0.0046	16.5	0.0	1.7	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
DUF4446	PF14584.1	gi|385804010|ref|YP_005840410.1|	-	0.011	15.5	1.1	0.011	15.5	0.8	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4446)
FIVAR	PF07554.8	gi|385804010|ref|YP_005840410.1|	-	0.012	15.8	1.5	0.012	15.8	1.0	3.0	2	1	1	3	3	3	0	Uncharacterised	Sugar-binding	Domain
Hydantoinase_A	PF01968.13	gi|385804010|ref|YP_005840410.1|	-	0.015	14.4	3.3	0.14	11.2	0.0	3.3	3	0	0	3	3	3	0	Hydantoinase/oxoprolinase
StbA	PF06406.6	gi|385804010|ref|YP_005840410.1|	-	0.032	13.1	0.0	0.1	11.5	0.0	1.8	1	0	0	1	1	1	0	StbA	protein
FtsA	PF14450.1	gi|385804010|ref|YP_005840410.1|	-	0.044	13.6	2.6	12	5.7	0.0	4.0	3	1	0	3	3	3	0	Cell	division	protein	FtsA
PhyH	PF05721.8	gi|385804010|ref|YP_005840410.1|	-	0.12	12.3	1.0	0.34	10.9	0.7	1.7	1	0	0	1	1	1	0	Phytanoyl-CoA	dioxygenase	(PhyH)
CorA	PF01544.13	gi|385804010|ref|YP_005840410.1|	-	2.1	7.3	5.6	4.9	6.1	3.9	1.6	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
DUF1664	PF07889.7	gi|385804010|ref|YP_005840410.1|	-	8	6.2	7.4	0.97	9.2	1.9	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
CTDII	PF01556.13	gi|385804011|ref|YP_005840411.1|	-	8.7e-32	108.8	0.0	8.2e-23	80.1	0.0	3.0	3	0	0	3	3	3	2	DnaJ	C	terminal	domain
DnaJ	PF00226.26	gi|385804011|ref|YP_005840411.1|	-	7.3e-25	86.4	2.3	1.6e-24	85.3	1.6	1.6	1	0	0	1	1	1	1	DnaJ	domain
DnaJ_CXXCXGXG	PF00684.14	gi|385804011|ref|YP_005840411.1|	-	9.5e-16	57.6	16.8	2.3e-15	56.4	11.7	1.7	1	0	0	1	1	1	1	DnaJ	central	domain
DZR	PF12773.2	gi|385804011|ref|YP_005840411.1|	-	0.0073	16.1	12.4	0.017	14.9	8.6	1.6	1	1	0	1	1	1	1	Double	zinc	ribbon
A2L_zn_ribbon	PF08792.5	gi|385804011|ref|YP_005840411.1|	-	0.8	9.2	8.6	2.5	7.6	0.2	3.1	2	1	1	3	3	3	0	A2L	zinc	ribbon	domain
Opy2	PF09463.5	gi|385804011|ref|YP_005840411.1|	-	1.7	8.7	17.8	3.5	7.8	3.8	3.2	3	0	0	3	3	3	0	Opy2	protein
zf-RING_3	PF14369.1	gi|385804011|ref|YP_005840411.1|	-	1.9	8.5	20.9	0.77	9.8	0.5	4.2	2	2	2	4	4	4	0	zinc-finger
Mut7-C	PF01927.11	gi|385804011|ref|YP_005840411.1|	-	2.2	8.2	4.9	46	3.9	4.1	2.4	1	1	1	2	2	2	0	Mut7-C	RNAse	domain
AMP-binding	PF00501.23	gi|385804012|ref|YP_005840412.1|	-	6.2e-05	21.5	0.0	0.01	14.2	0.0	2.3	2	0	0	2	2	2	2	AMP-binding	enzyme
Acetyltransf_1	PF00583.19	gi|385804013|ref|YP_005840413.1|	-	2.2e-05	24.3	0.0	3.5e-05	23.7	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.1	gi|385804013|ref|YP_005840413.1|	-	0.0041	17.2	0.0	0.0064	16.6	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|385804013|ref|YP_005840413.1|	-	0.0067	16.5	0.0	0.011	15.8	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|385804013|ref|YP_005840413.1|	-	0.041	13.7	0.0	0.07	12.9	0.0	1.4	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
DUF1656	PF07869.7	gi|385804015|ref|YP_005840415.1|	-	0.098	12.4	2.1	0.17	11.6	1.4	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1656)
FtsX	PF02687.16	gi|385804015|ref|YP_005840415.1|	-	0.37	10.5	7.1	0.49	10.1	4.9	1.1	1	0	0	1	1	1	0	FtsX-like	permease	family
dCMP_cyt_deam_1	PF00383.17	gi|385804017|ref|YP_005840417.1|	-	1.3e-17	63.2	0.4	1.6e-17	62.9	0.2	1.1	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
dCMP_cyt_deam_2	PF08211.6	gi|385804017|ref|YP_005840417.1|	-	7.5e-13	48.5	0.4	1.1e-12	48.0	0.3	1.2	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
YwqJ-deaminase	PF14431.1	gi|385804017|ref|YP_005840417.1|	-	0.032	14.0	0.4	0.21	11.4	0.1	1.9	1	1	1	2	2	2	0	YwqJ-like	deaminase
MafB19-deam	PF14437.1	gi|385804017|ref|YP_005840417.1|	-	0.09	12.4	0.5	0.19	11.3	0.4	1.5	1	1	0	1	1	1	0	MafB19-like	deaminase
PNP_UDP_1	PF01048.15	gi|385804018|ref|YP_005840418.1|	-	8.1e-44	149.3	0.5	9.8e-44	149.0	0.4	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
Pyr_redox_2	PF07992.9	gi|385804019|ref|YP_005840419.1|	-	2.3e-18	66.7	0.1	8.4e-18	64.9	0.1	2.8	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|385804019|ref|YP_005840419.1|	-	1.7e-09	37.9	0.5	3.6e-07	30.4	0.1	2.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|385804019|ref|YP_005840419.1|	-	1.6e-07	31.6	0.3	0.00071	19.6	0.0	2.8	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|385804019|ref|YP_005840419.1|	-	9.8e-05	22.1	0.9	2.6	7.7	0.0	3.4	3	0	0	3	3	3	3	FAD-NAD(P)-binding
K_oxygenase	PF13434.1	gi|385804019|ref|YP_005840419.1|	-	0.0057	15.6	0.0	0.85	8.4	0.0	2.3	2	0	0	2	2	2	2	L-lysine	6-monooxygenase	(NADPH-requiring)
NAD_binding_8	PF13450.1	gi|385804019|ref|YP_005840419.1|	-	0.057	13.4	0.1	16	5.5	0.0	2.7	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
AlaDh_PNT_C	PF01262.16	gi|385804019|ref|YP_005840419.1|	-	0.088	12.3	0.9	6	6.3	0.2	2.4	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
HrcA_DNA-bdg	PF03444.10	gi|385804020|ref|YP_005840420.1|	-	1.1e-36	124.1	0.1	1.5e-36	123.6	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Rrf2	PF02082.15	gi|385804020|ref|YP_005840420.1|	-	1.1e-08	35.0	0.0	1.9e-08	34.3	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_11	PF08279.7	gi|385804020|ref|YP_005840420.1|	-	2.6e-06	26.9	0.0	3.9e-06	26.3	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.14	gi|385804020|ref|YP_005840420.1|	-	0.032	13.9	0.0	0.055	13.1	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Epimerase	PF01370.16	gi|385804021|ref|YP_005840421.1|	-	2.2e-42	145.1	0.5	2.8e-42	144.7	0.3	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.12	gi|385804021|ref|YP_005840421.1|	-	7e-19	67.7	0.4	8.7e-19	67.4	0.3	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.14	gi|385804021|ref|YP_005840421.1|	-	4.2e-15	55.2	0.1	6.3e-15	54.6	0.0	1.3	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.10	gi|385804021|ref|YP_005840421.1|	-	2.7e-11	42.9	0.5	4.9e-08	32.2	0.1	2.6	2	1	0	2	2	2	2	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.7	gi|385804021|ref|YP_005840421.1|	-	5.4e-11	41.9	0.1	5.6e-08	32.0	0.0	2.2	2	0	0	2	2	2	2	Male	sterility	protein
adh_short	PF00106.20	gi|385804021|ref|YP_005840421.1|	-	1.1e-06	28.6	0.6	0.0077	16.1	0.1	2.4	1	1	1	2	2	2	2	short	chain	dehydrogenase
NAD_binding_10	PF13460.1	gi|385804021|ref|YP_005840421.1|	-	2.5e-05	24.3	0.0	3.1e-05	24.0	0.0	1.3	1	0	0	1	1	1	1	NADH(P)-binding
KR	PF08659.5	gi|385804021|ref|YP_005840421.1|	-	0.0043	16.7	0.3	0.33	10.5	0.1	2.3	1	1	1	2	2	2	1	KR	domain
2OG-FeII_Oxy_4	PF13661.1	gi|385804021|ref|YP_005840421.1|	-	0.024	14.2	0.0	0.052	13.1	0.0	1.5	1	0	0	1	1	1	0	2OG-Fe(II)	oxygenase	superfamily
DNA_topoisoIV	PF00521.15	gi|385804022|ref|YP_005840422.1|	-	8e-149	496.0	0.0	1.1e-148	495.6	0.0	1.2	1	0	0	1	1	1	1	DNA	gyrase/topoisomerase	IV,	subunit	A
DNA_gyraseA_C	PF03989.8	gi|385804022|ref|YP_005840422.1|	-	7e-68	223.7	7.6	8.3e-12	44.2	0.1	6.4	6	0	0	6	6	6	6	DNA	gyrase	C-terminal	domain,	beta-propeller
DUF2262	PF10020.4	gi|385804022|ref|YP_005840422.1|	-	0.011	15.8	0.8	0.023	14.8	0.2	1.8	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2262)
DNA_gyraseB	PF00204.20	gi|385804023|ref|YP_005840423.1|	-	4e-59	198.6	0.3	9e-59	197.5	0.2	1.6	1	0	0	1	1	1	1	DNA	gyrase	B
DNA_gyraseB_C	PF00986.16	gi|385804023|ref|YP_005840423.1|	-	2.6e-30	103.9	0.0	5.5e-30	102.9	0.0	1.6	1	0	0	1	1	1	1	DNA	gyrase	B	subunit,	carboxyl	terminus
HATPase_c	PF02518.21	gi|385804023|ref|YP_005840423.1|	-	2.1e-20	72.5	0.0	5.7e-20	71.0	0.0	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Toprim	PF01751.17	gi|385804023|ref|YP_005840423.1|	-	2.1e-18	66.1	0.2	5.4e-17	61.6	0.0	2.8	3	0	0	3	3	3	1	Toprim	domain
HATPase_c_3	PF13589.1	gi|385804023|ref|YP_005840423.1|	-	0.00044	19.9	1.9	0.00048	19.8	0.0	2.0	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Intein_splicing	PF14890.1	gi|385804023|ref|YP_005840423.1|	-	0.0042	16.0	1.8	0.011	14.6	1.3	1.6	1	1	0	1	1	1	1	Intein	splicing	domain
PT-HINT	PF07591.6	gi|385804023|ref|YP_005840423.1|	-	0.0096	15.7	0.3	0.99	9.2	0.0	2.5	1	1	1	2	2	2	1	Pretoxin	HINT	domain
Topo-VIb_trans	PF09239.6	gi|385804024|ref|YP_005840424.1|	-	1.2e-62	210.2	0.0	2.5e-62	209.1	0.0	1.6	1	0	0	1	1	1	1	Topoisomerase	VI	B	subunit,	transducer
HATPase_c	PF02518.21	gi|385804024|ref|YP_005840424.1|	-	2.9e-13	49.5	0.1	1.6e-11	43.8	0.0	3.2	3	0	0	3	3	3	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_3	PF13589.1	gi|385804024|ref|YP_005840424.1|	-	1.2e-08	34.7	0.0	3.2e-06	26.8	0.0	3.0	2	0	0	2	2	2	2	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|385804024|ref|YP_005840424.1|	-	0.00015	21.5	0.2	0.0016	18.2	0.0	2.7	3	0	0	3	3	3	1	Histidine	kinase-like	ATPase	domain
Intein_splicing	PF14890.1	gi|385804024|ref|YP_005840424.1|	-	0.0028	16.6	0.0	0.038	12.8	0.0	2.2	2	0	0	2	2	2	1	Intein	splicing	domain
TP6A_N	PF04406.9	gi|385804025|ref|YP_005840425.1|	-	3.1e-20	71.5	0.2	5.5e-20	70.8	0.2	1.4	1	0	0	1	1	1	1	Type	IIB	DNA	topoisomerase
TMP-TENI	PF02581.12	gi|385804026|ref|YP_005840426.1|	-	1.2e-59	200.4	4.3	1.4e-59	200.2	3.0	1.1	1	0	0	1	1	1	1	Thiamine	monophosphate	synthase/TENI
ThiG	PF05690.9	gi|385804026|ref|YP_005840426.1|	-	9.6e-08	31.3	2.0	1.2e-07	31.0	1.4	1.3	1	0	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
NMO	PF03060.10	gi|385804026|ref|YP_005840426.1|	-	5.2e-05	22.5	7.3	7.1e-05	22.1	5.1	1.1	1	0	0	1	1	1	1	Nitronate	monooxygenase
DHO_dh	PF01180.16	gi|385804026|ref|YP_005840426.1|	-	0.00049	19.1	0.6	0.00074	18.5	0.4	1.2	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
DUF561	PF04481.7	gi|385804026|ref|YP_005840426.1|	-	0.00091	18.2	0.7	0.0041	16.1	0.2	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF561)
Dus	PF01207.12	gi|385804026|ref|YP_005840426.1|	-	0.0094	14.8	0.2	0.016	14.0	0.0	1.4	1	1	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
PRAI	PF00697.17	gi|385804026|ref|YP_005840426.1|	-	0.041	13.4	0.1	3.5	7.1	0.1	2.2	2	0	0	2	2	2	0	N-(5'phosphoribosyl)anthranilate	(PRA)	isomerase
IMPDH	PF00478.20	gi|385804026|ref|YP_005840426.1|	-	0.044	12.6	6.8	0.055	12.3	4.7	1.2	1	0	0	1	1	1	0	IMP	dehydrogenase	/	GMP	reductase	domain
OMPdecase	PF00215.19	gi|385804026|ref|YP_005840426.1|	-	0.1	11.9	2.8	0.14	11.5	1.4	1.8	1	1	1	2	2	2	0	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
NanE	PF04131.9	gi|385804026|ref|YP_005840426.1|	-	0.11	11.4	9.8	5.4	5.9	0.0	3.5	1	1	3	4	4	4	0	Putative	N-acetylmannosamine-6-phosphate	epimerase
HK	PF02110.10	gi|385804027|ref|YP_005840427.1|	-	4.8e-62	209.3	6.5	6e-62	208.9	4.5	1.0	1	0	0	1	1	1	1	Hydroxyethylthiazole	kinase	family
Carb_kinase	PF01256.12	gi|385804027|ref|YP_005840427.1|	-	2e-05	24.0	3.5	2.7e-05	23.5	2.4	1.2	1	0	0	1	1	1	1	Carbohydrate	kinase
Phos_pyr_kin	PF08543.7	gi|385804028|ref|YP_005840428.1|	-	2.9e-82	275.5	3.9	3.5e-82	275.2	2.7	1.0	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
PfkB	PF00294.19	gi|385804028|ref|YP_005840428.1|	-	5.1e-10	38.9	2.2	5.1e-10	38.9	1.5	1.4	2	0	0	2	2	2	1	pfkB	family	carbohydrate	kinase
Carb_kinase	PF01256.12	gi|385804028|ref|YP_005840428.1|	-	0.0011	18.2	3.4	0.0023	17.2	2.4	1.6	1	1	0	1	1	1	1	Carbohydrate	kinase
HK	PF02110.10	gi|385804028|ref|YP_005840428.1|	-	0.0095	15.1	4.2	0.13	11.4	2.9	2.3	1	1	0	1	1	1	1	Hydroxyethylthiazole	kinase	family
EIF_2_alpha	PF07541.7	gi|385804028|ref|YP_005840428.1|	-	0.11	12.2	0.0	0.94	9.2	0.0	2.1	2	0	0	2	2	2	0	Eukaryotic	translation	initiation	factor	2	alpha	subunit
Lactamase_B_3	PF13483.1	gi|385804029|ref|YP_005840429.1|	-	5.8e-28	97.6	0.1	7.6e-28	97.2	0.1	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
XdhC_C	PF13478.1	gi|385804029|ref|YP_005840429.1|	-	0.012	15.9	0.0	0.021	15.1	0.0	1.5	1	0	0	1	1	1	0	XdhC	Rossmann	domain
Pox_polyA_pol	PF03296.8	gi|385804029|ref|YP_005840429.1|	-	0.054	13.0	0.1	0.35	10.4	0.0	1.9	2	0	0	2	2	2	0	Poxvirus	poly(A)	polymerase	nucleotidyltransferase	domain
DNA_ligase_A_M	PF01068.16	gi|385804030|ref|YP_005840430.1|	-	1.3e-46	158.5	0.0	1.9e-46	158.0	0.0	1.2	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	domain
DNA_ligase_A_N	PF04675.9	gi|385804030|ref|YP_005840430.1|	-	8.5e-38	129.9	0.0	1.7e-37	128.9	0.0	1.5	1	0	0	1	1	1	1	DNA	ligase	N	terminus
DNA_ligase_A_C	PF04679.10	gi|385804030|ref|YP_005840430.1|	-	7.8e-18	64.6	0.0	3.4e-17	62.6	0.0	2.1	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	C	terminal	region
DUF3839	PF12943.2	gi|385804030|ref|YP_005840430.1|	-	0.089	11.9	0.1	0.14	11.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3839)
Proteasome	PF00227.21	gi|385804032|ref|YP_005840432.1|	-	5.3e-51	172.6	0.2	6.1e-51	172.4	0.2	1.0	1	0	0	1	1	1	1	Proteasome	subunit
VP7	PF00434.13	gi|385804033|ref|YP_005840433.1|	-	0.0039	16.1	0.0	0.0044	15.9	0.0	1.0	1	0	0	1	1	1	1	Glycoprotein	VP7
DUF555	PF04475.7	gi|385804034|ref|YP_005840434.1|	-	1.5e-45	153.3	0.0	1.8e-45	153.1	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF555)
zinc_ribbon_2	PF13240.1	gi|385804034|ref|YP_005840434.1|	-	0.019	14.4	0.2	0.032	13.7	0.1	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
QueC	PF06508.8	gi|385804035|ref|YP_005840435.1|	-	0.15	11.3	0.0	0.25	10.5	0.0	1.3	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
CBS	PF00571.23	gi|385804036|ref|YP_005840436.1|	-	5.7e-20	70.8	4.7	6.4e-14	51.4	0.0	2.7	2	1	0	2	2	2	2	CBS	domain
HTH_3	PF01381.17	gi|385804036|ref|YP_005840436.1|	-	5.9e-11	42.0	0.1	1.1e-10	41.1	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.1	gi|385804036|ref|YP_005840436.1|	-	1.8e-10	40.8	0.7	3.7e-10	39.8	0.5	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.2	gi|385804036|ref|YP_005840436.1|	-	4.4e-08	33.0	0.0	7.4e-08	32.3	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_37	PF13744.1	gi|385804036|ref|YP_005840436.1|	-	0.0002	21.0	0.1	0.00037	20.2	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_26	PF13443.1	gi|385804036|ref|YP_005840436.1|	-	0.0045	17.1	0.0	0.0084	16.2	0.0	1.4	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
ILVD_EDD	PF00920.16	gi|385804036|ref|YP_005840436.1|	-	0.0055	15.1	0.1	0.0075	14.7	0.1	1.2	1	0	0	1	1	1	1	Dehydratase	family
HTH_25	PF13413.1	gi|385804036|ref|YP_005840436.1|	-	0.02	14.5	0.1	0.033	13.8	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
AIRS_C	PF02769.17	gi|385804037|ref|YP_005840437.1|	-	2.9e-17	63.0	0.0	5.3e-17	62.2	0.0	1.4	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.19	gi|385804037|ref|YP_005840437.1|	-	1.1e-13	51.1	1.4	1.1e-13	51.1	1.0	1.8	2	0	0	2	2	2	1	AIR	synthase	related	protein,	N-terminal	domain
PsaD	PF02531.11	gi|385804037|ref|YP_005840437.1|	-	0.035	13.3	0.0	0.094	11.9	0.0	1.7	2	0	0	2	2	2	0	PsaD
Peptidase_M50	PF02163.17	gi|385804039|ref|YP_005840439.1|	-	2.7e-08	33.0	17.2	5.8e-08	31.9	10.0	2.5	1	1	1	2	2	2	1	Peptidase	family	M50
Tmemb_185A	PF10269.4	gi|385804039|ref|YP_005840439.1|	-	0.3	10.6	6.7	1.1	8.8	4.7	1.9	1	1	0	1	1	1	0	Transmembrane	Fragile-X-F	protein
TraB	PF01963.12	gi|385804040|ref|YP_005840440.1|	-	4e-38	131.3	0.1	1.5e-19	70.4	0.0	2.2	2	0	0	2	2	2	2	TraB	family
DUF399	PF04187.8	gi|385804040|ref|YP_005840440.1|	-	0.15	11.4	0.0	0.28	10.6	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF399
DNase-RNase	PF02577.9	gi|385804041|ref|YP_005840441.1|	-	4.7e-36	122.9	0.0	5.3e-36	122.8	0.0	1.1	1	0	0	1	1	1	1	Bifunctional	nuclease
tRNA-synt_1	PF00133.17	gi|385804043|ref|YP_005840443.1|	-	3.5e-183	609.8	1.1	4.8e-183	609.4	0.8	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.8	gi|385804043|ref|YP_005840443.1|	-	1.2e-31	109.4	0.1	2.7e-31	108.4	0.1	1.6	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.6	gi|385804043|ref|YP_005840443.1|	-	6.3e-30	104.1	1.1	4.4e-11	42.0	0.0	4.4	4	1	0	4	4	4	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1_2	PF13603.1	gi|385804043|ref|YP_005840443.1|	-	0.00011	21.5	0.0	0.00027	20.2	0.0	1.6	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1f	PF01921.13	gi|385804043|ref|YP_005840443.1|	-	0.00058	18.6	0.0	0.0091	14.7	0.0	2.3	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1e	PF01406.14	gi|385804043|ref|YP_005840443.1|	-	0.023	13.8	0.0	0.086	11.9	0.0	1.9	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(C)	catalytic	domain
zf-FPG_IleRS	PF06827.9	gi|385804043|ref|YP_005840443.1|	-	0.12	12.0	0.2	0.32	10.6	0.1	1.7	1	0	0	1	1	1	0	Zinc	finger	found	in	FPG	and	IleRS
Dak1	PF02733.12	gi|385804044|ref|YP_005840444.1|	-	3.3e-100	334.8	4.8	4.1e-100	334.5	3.3	1.0	1	0	0	1	1	1	1	Dak1	domain
Dak2	PF02734.12	gi|385804045|ref|YP_005840445.1|	-	3.4e-48	163.5	0.6	3.4e-48	163.5	0.4	1.5	2	0	0	2	2	2	1	DAK2	domain
EIIA-man	PF03610.11	gi|385804046|ref|YP_005840446.1|	-	3.5e-16	59.2	3.7	1e-08	35.2	0.5	2.1	2	0	0	2	2	2	2	PTS	system	fructose	IIA	component
CoatB	PF10389.4	gi|385804046|ref|YP_005840446.1|	-	3.5	7.5	8.7	1.2	9.0	0.7	2.6	2	0	0	2	2	2	0	Bacteriophage	coat	protein	B
DAO	PF01266.19	gi|385804047|ref|YP_005840447.1|	-	3.6e-61	207.0	2.1	4.6e-61	206.7	1.5	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|385804047|ref|YP_005840447.1|	-	7.3e-07	28.5	4.0	2.3e-06	26.9	2.7	1.7	1	1	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|385804047|ref|YP_005840447.1|	-	4.3e-06	26.7	2.2	0.00025	20.9	1.5	2.2	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|385804047|ref|YP_005840447.1|	-	2.6e-05	24.3	0.2	0.26	11.2	0.0	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.2	gi|385804047|ref|YP_005840447.1|	-	0.00051	19.2	4.0	0.0011	18.1	2.8	1.6	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|385804047|ref|YP_005840447.1|	-	0.00073	18.1	4.4	0.36	9.2	1.5	2.1	2	0	0	2	2	2	2	HI0933-like	protein
NAD_binding_8	PF13450.1	gi|385804047|ref|YP_005840447.1|	-	0.0023	17.9	5.5	0.0076	16.2	3.8	1.9	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
3HCDH_N	PF02737.13	gi|385804047|ref|YP_005840447.1|	-	0.0056	16.3	1.3	0.012	15.2	0.9	1.5	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pyr_redox	PF00070.22	gi|385804047|ref|YP_005840447.1|	-	0.012	16.0	3.0	0.11	12.8	0.7	2.5	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.12	gi|385804047|ref|YP_005840447.1|	-	0.02	14.0	1.7	0.02	14.0	1.1	2.1	2	0	0	2	2	2	0	Thi4	family
FAD_binding_2	PF00890.19	gi|385804047|ref|YP_005840447.1|	-	0.054	12.3	11.4	0.58	8.9	7.9	2.0	1	1	0	1	1	1	0	FAD	binding	domain
NAD_Gly3P_dh_N	PF01210.18	gi|385804047|ref|YP_005840447.1|	-	0.11	12.1	0.3	0.21	11.3	0.2	1.4	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
F420_oxidored	PF03807.12	gi|385804047|ref|YP_005840447.1|	-	0.14	12.6	0.2	0.76	10.2	0.4	2.1	2	0	0	2	2	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
Lycopene_cycl	PF05834.7	gi|385804047|ref|YP_005840447.1|	-	2.5	6.9	4.4	5.9	5.7	0.8	2.1	2	0	0	2	2	2	0	Lycopene	cyclase	protein
NAD_binding_9	PF13454.1	gi|385804047|ref|YP_005840447.1|	-	5.1	6.8	7.3	0.61	9.8	1.2	2.1	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Amino_oxidase	PF01593.19	gi|385804047|ref|YP_005840447.1|	-	9.5	5.1	8.1	0.33	9.9	0.1	2.3	3	0	0	3	3	3	0	Flavin	containing	amine	oxidoreductase
Hydrolase_3	PF08282.7	gi|385804048|ref|YP_005840448.1|	-	1.1e-26	93.9	0.0	1.6e-17	63.9	0.0	2.0	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.8	gi|385804048|ref|YP_005840448.1|	-	6.3e-06	25.6	0.0	9.5e-05	21.8	0.0	2.1	2	0	0	2	2	2	1	Sucrose-6F-phosphate	phosphohydrolase
Hydrolase	PF00702.21	gi|385804048|ref|YP_005840448.1|	-	0.0011	19.4	0.5	0.11	12.9	0.4	2.5	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.1	gi|385804048|ref|YP_005840448.1|	-	0.045	13.9	0.2	4.4	7.4	0.0	2.6	1	1	1	2	2	2	0	Haloacid	dehalogenase-like	hydrolase
Trehalose_PPase	PF02358.11	gi|385804048|ref|YP_005840448.1|	-	0.051	12.4	0.3	0.19	10.6	0.0	1.9	2	0	0	2	2	2	0	Trehalose-phosphatase
HAD	PF12710.2	gi|385804048|ref|YP_005840448.1|	-	0.062	13.4	4.8	0.17	12.0	0.1	2.7	1	1	1	2	2	2	0	haloacid	dehalogenase-like	hydrolase
DUF2608	PF11019.3	gi|385804048|ref|YP_005840448.1|	-	0.12	11.3	0.0	0.23	10.4	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2608)
BMC	PF00936.14	gi|385804048|ref|YP_005840448.1|	-	0.42	10.3	2.1	0.74	9.5	0.1	2.1	2	0	0	2	2	2	0	BMC	domain
zf-CCHC_5	PF14787.1	gi|385804049|ref|YP_005840449.1|	-	0.0016	17.8	0.2	0.025	14.0	0.2	2.2	2	0	0	2	2	2	1	GAG-polyprotein	viral	zinc-finger
Methyltransf_11	PF08241.7	gi|385804050|ref|YP_005840450.1|	-	2e-17	63.4	0.0	2.9e-17	62.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|385804050|ref|YP_005840450.1|	-	5.5e-10	39.5	0.0	8.8e-10	38.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|385804050|ref|YP_005840450.1|	-	1.2e-09	37.9	0.0	1.5e-09	37.6	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|385804050|ref|YP_005840450.1|	-	2.7e-07	29.9	0.0	3.8e-07	29.4	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.1	gi|385804050|ref|YP_005840450.1|	-	4.9e-06	26.3	0.0	6.4e-06	25.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|385804050|ref|YP_005840450.1|	-	5.1e-06	27.0	0.0	8.6e-06	26.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|385804050|ref|YP_005840450.1|	-	0.00031	21.1	0.0	0.0005	20.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
DREV	PF05219.7	gi|385804050|ref|YP_005840450.1|	-	0.00098	18.0	0.0	0.0012	17.7	0.0	1.2	1	0	0	1	1	1	1	DREV	methyltransferase
Methyltransf_26	PF13659.1	gi|385804050|ref|YP_005840450.1|	-	0.0015	18.5	0.0	0.0027	17.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
RrnaAD	PF00398.15	gi|385804050|ref|YP_005840450.1|	-	0.037	13.0	0.0	0.048	12.6	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
FYVE	PF01363.16	gi|385804051|ref|YP_005840451.1|	-	9.6e-05	22.2	0.7	0.0001	22.1	0.5	1.1	1	0	0	1	1	1	1	FYVE	zinc	finger
DZR	PF12773.2	gi|385804051|ref|YP_005840451.1|	-	0.0021	17.8	1.5	0.0024	17.6	1.1	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
HypA	PF01155.14	gi|385804051|ref|YP_005840451.1|	-	0.0054	16.4	1.5	0.0055	16.3	1.0	1.1	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
Cript	PF10235.4	gi|385804051|ref|YP_005840451.1|	-	0.029	14.6	0.5	0.032	14.5	0.4	1.1	1	0	0	1	1	1	0	Microtubule-associated	protein	CRIPT
NRDD	PF13597.1	gi|385804051|ref|YP_005840451.1|	-	0.038	12.0	1.1	0.036	12.1	0.7	1.0	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
Nudix_N_2	PF14803.1	gi|385804051|ref|YP_005840451.1|	-	0.077	12.6	2.9	0.82	9.4	0.1	2.1	2	0	0	2	2	2	0	Nudix	N-terminal
RNA_POL_M_15KD	PF02150.11	gi|385804051|ref|YP_005840451.1|	-	0.08	12.6	3.6	0.44	10.2	0.2	2.1	1	1	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
Zn-ribbon_8	PF09723.5	gi|385804051|ref|YP_005840451.1|	-	0.099	12.6	3.7	3.7	7.5	0.2	2.2	1	1	1	2	2	2	0	Zinc	ribbon	domain
NOB1_Zn_bind	PF08772.6	gi|385804051|ref|YP_005840451.1|	-	0.11	12.2	1.4	0.14	11.9	1.0	1.2	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
ADK_lid	PF05191.9	gi|385804051|ref|YP_005840451.1|	-	0.24	11.1	2.7	7.7	6.2	1.0	2.3	1	1	1	2	2	2	0	Adenylate	kinase,	active	site	lid
RecR	PF02132.10	gi|385804051|ref|YP_005840451.1|	-	0.58	9.6	5.3	2.5	7.5	3.6	1.9	1	1	1	2	2	2	0	RecR	protein
GATA	PF00320.22	gi|385804051|ref|YP_005840451.1|	-	0.65	9.3	3.5	1.6	8.1	0.1	2.2	1	1	1	2	2	2	0	GATA	zinc	finger
zf-ribbon_3	PF13248.1	gi|385804051|ref|YP_005840451.1|	-	0.77	9.0	3.4	4.3	6.6	2.4	1.9	1	1	1	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|385804051|ref|YP_005840451.1|	-	1.7	8.3	5.1	3	7.5	3.5	1.5	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DNA_RNApol_7kD	PF03604.8	gi|385804051|ref|YP_005840451.1|	-	3.2	7.3	5.7	5.5	6.5	0.4	2.0	1	1	1	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-C2H2_6	PF13912.1	gi|385804051|ref|YP_005840451.1|	-	4.1	7.4	6.5	1.5	8.8	0.3	2.1	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-C2H2_3	PF13878.1	gi|385804051|ref|YP_005840451.1|	-	4.5	6.9	5.7	2.4	7.7	0.1	2.1	1	1	1	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
DUF368	PF04018.8	gi|385804052|ref|YP_005840452.1|	-	1.3e-67	227.6	17.4	1.3e-67	227.6	12.0	1.5	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF368)
UDPG_MGDP_dh_N	PF03721.9	gi|385804053|ref|YP_005840453.1|	-	1.8e-47	161.0	0.1	2.7e-45	154.0	0.0	2.9	2	1	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.14	gi|385804053|ref|YP_005840453.1|	-	1.2e-32	111.9	0.1	2.4e-32	111.0	0.0	1.5	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.10	gi|385804053|ref|YP_005840453.1|	-	2.3e-26	91.9	0.1	6e-26	90.6	0.1	1.7	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
Pyr_redox	PF00070.22	gi|385804053|ref|YP_005840453.1|	-	4.1e-05	23.9	0.2	0.00023	21.4	0.2	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.13	gi|385804053|ref|YP_005840453.1|	-	5.9e-05	22.7	0.3	0.00016	21.4	0.0	1.8	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.18	gi|385804053|ref|YP_005840453.1|	-	0.00022	21.0	0.0	0.0008	19.1	0.0	1.9	2	0	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
ApbA	PF02558.11	gi|385804053|ref|YP_005840453.1|	-	0.0016	17.9	0.0	0.0047	16.3	0.0	1.8	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
AlaDh_PNT_C	PF01262.16	gi|385804053|ref|YP_005840453.1|	-	0.019	14.5	0.0	0.038	13.5	0.0	1.5	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_8	PF13450.1	gi|385804053|ref|YP_005840453.1|	-	0.029	14.3	0.2	0.096	12.7	0.1	2.0	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
2-Hacid_dh_C	PF02826.14	gi|385804053|ref|YP_005840453.1|	-	0.043	12.9	0.2	0.75	8.9	0.0	2.5	3	0	0	3	3	3	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.10	gi|385804053|ref|YP_005840453.1|	-	0.05	13.4	0.0	1.9	8.3	0.0	2.6	2	0	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
TrkA_N	PF02254.13	gi|385804053|ref|YP_005840453.1|	-	0.055	13.4	1.3	0.59	10.1	0.0	3.0	3	1	0	3	3	3	0	TrkA-N	domain
CHASE2	PF05226.6	gi|385804053|ref|YP_005840453.1|	-	0.1	11.8	1.4	0.34	10.0	0.1	2.3	2	1	1	3	3	3	0	CHASE2	domain
DAO	PF01266.19	gi|385804053|ref|YP_005840453.1|	-	0.3	9.9	2.4	0.45	9.3	0.7	1.9	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
STT3	PF02516.9	gi|385804054|ref|YP_005840454.1|	-	2.2e-19	69.7	26.0	2.2e-19	69.7	18.0	2.7	2	1	0	2	2	2	1	Oligosaccharyl	transferase	STT3	subunit
NTP_transferase	PF00483.18	gi|385804055|ref|YP_005840455.1|	-	9.8e-42	142.9	0.0	1.1e-41	142.7	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|385804055|ref|YP_005840455.1|	-	8.1e-15	55.2	0.0	9.5e-15	55.0	0.0	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.14	gi|385804055|ref|YP_005840455.1|	-	5.2e-05	22.8	0.0	0.00025	20.6	0.0	1.9	2	0	0	2	2	2	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Epimerase	PF01370.16	gi|385804056|ref|YP_005840456.1|	-	1.4e-62	211.2	0.1	1.7e-62	210.9	0.1	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|385804056|ref|YP_005840456.1|	-	3.7e-20	71.7	0.0	4.9e-20	71.3	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.12	gi|385804056|ref|YP_005840456.1|	-	7.4e-16	57.8	0.1	1.2e-15	57.1	0.1	1.4	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.10	gi|385804056|ref|YP_005840456.1|	-	5.8e-13	48.3	0.0	1.9e-12	46.7	0.0	1.8	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.7	gi|385804056|ref|YP_005840456.1|	-	5.6e-11	41.8	1.0	9.8e-10	37.7	0.7	2.1	1	1	0	1	1	1	1	Male	sterility	protein
NAD_binding_10	PF13460.1	gi|385804056|ref|YP_005840456.1|	-	2.5e-09	37.4	0.5	4.6e-08	33.2	0.3	2.1	1	1	0	1	1	1	1	NADH(P)-binding
NmrA	PF05368.8	gi|385804056|ref|YP_005840456.1|	-	3.4e-06	26.5	0.0	5.3e-06	25.8	0.0	1.4	1	1	0	1	1	1	1	NmrA-like	family
adh_short	PF00106.20	gi|385804056|ref|YP_005840456.1|	-	7.8e-06	25.9	0.4	2.7e-05	24.1	0.3	2.0	1	1	0	1	1	1	1	short	chain	dehydrogenase
Epimerase_Csub	PF13950.1	gi|385804056|ref|YP_005840456.1|	-	0.00047	20.0	0.0	0.00097	19.0	0.0	1.6	1	0	0	1	1	1	1	UDP-glucose	4-epimerase	C-term	subunit
3HCDH_N	PF02737.13	gi|385804056|ref|YP_005840456.1|	-	0.026	14.1	0.2	0.051	13.2	0.0	1.6	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
KR	PF08659.5	gi|385804056|ref|YP_005840456.1|	-	0.11	12.1	0.3	1.9	8.1	0.2	2.2	1	1	0	1	1	1	0	KR	domain
ABC_tran	PF00005.22	gi|385804057|ref|YP_005840457.1|	-	1.2e-32	113.0	0.0	2.2e-32	112.2	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
ABC_membrane	PF00664.18	gi|385804057|ref|YP_005840457.1|	-	2.9e-07	30.1	4.2	4.4e-07	29.6	2.9	1.2	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
SMC_N	PF02463.14	gi|385804057|ref|YP_005840457.1|	-	3.9e-07	29.5	1.2	7e-06	25.4	0.1	2.2	1	1	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_17	PF13207.1	gi|385804057|ref|YP_005840457.1|	-	0.00012	22.8	0.6	0.00042	21.1	0.4	2.0	1	1	0	1	1	1	1	AAA	domain
DUF258	PF03193.11	gi|385804057|ref|YP_005840457.1|	-	0.00012	21.2	0.0	0.0003	20.0	0.0	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function,	DUF258
AAA_21	PF13304.1	gi|385804057|ref|YP_005840457.1|	-	0.0004	20.4	0.0	0.081	12.8	0.0	2.5	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|385804057|ref|YP_005840457.1|	-	0.0007	19.0	0.0	0.0014	18.0	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.1	gi|385804057|ref|YP_005840457.1|	-	0.0013	18.1	0.1	0.0051	16.2	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|385804057|ref|YP_005840457.1|	-	0.0079	16.3	0.4	0.071	13.2	0.2	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|385804057|ref|YP_005840457.1|	-	0.013	15.5	0.2	0.057	13.4	0.1	2.1	2	1	0	2	2	2	0	AAA	ATPase	domain
AAA_30	PF13604.1	gi|385804057|ref|YP_005840457.1|	-	0.017	14.7	0.0	0.2	11.2	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.1	gi|385804057|ref|YP_005840457.1|	-	0.045	14.0	0.0	0.13	12.5	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
ABC_ATPase	PF09818.4	gi|385804057|ref|YP_005840457.1|	-	0.083	11.4	0.1	0.17	10.4	0.0	1.5	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
DUF87	PF01935.12	gi|385804057|ref|YP_005840457.1|	-	0.087	12.6	0.2	0.26	11.0	0.1	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	DUF87
DASH_Dam1	PF08653.5	gi|385804057|ref|YP_005840457.1|	-	0.33	10.7	1.4	1.3	8.8	0.1	2.3	2	0	0	2	2	2	0	DASH	complex	subunit	Dam1
Glycos_transf_1	PF00534.15	gi|385804058|ref|YP_005840458.1|	-	7e-39	132.9	0.0	1.5e-38	131.8	0.0	1.5	1	1	1	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|385804058|ref|YP_005840458.1|	-	2.5e-20	73.0	0.0	4.3e-20	72.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|385804058|ref|YP_005840458.1|	-	1.4e-13	50.9	0.0	2.6e-13	50.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|385804058|ref|YP_005840458.1|	-	1.3e-10	41.6	0.0	3.6e-10	40.2	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.1	gi|385804058|ref|YP_005840458.1|	-	8.1e-08	32.1	0.0	3.9e-07	29.9	0.0	2.0	2	1	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_2	PF13477.1	gi|385804058|ref|YP_005840458.1|	-	1.8e-07	31.1	0.0	3.3e-07	30.1	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
Methyltransf_21	PF05050.7	gi|385804064|ref|YP_005840464.1|	-	0.002	18.0	0.0	0.003	17.5	0.0	1.3	1	1	0	1	1	1	1	Methyltransferase	FkbM	domain
Methyltransf_21	PF05050.7	gi|385804065|ref|YP_005840465.1|	-	5.5e-13	49.2	0.1	8e-13	48.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	FkbM	domain
Methyltransf_18	PF12847.2	gi|385804065|ref|YP_005840465.1|	-	5.6e-06	26.9	0.1	9.9e-06	26.1	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Met_10	PF02475.11	gi|385804065|ref|YP_005840465.1|	-	0.014	14.9	0.0	0.019	14.5	0.0	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
V_cholerae_RfbT	PF05575.6	gi|385804065|ref|YP_005840465.1|	-	0.05	12.6	0.0	0.058	12.4	0.0	1.2	1	0	0	1	1	1	0	Vibrio	cholerae	RfbT	protein
Glycos_transf_1	PF00534.15	gi|385804067|ref|YP_005840467.1|	-	1.8e-17	63.2	0.0	2.9e-17	62.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|385804067|ref|YP_005840467.1|	-	6.9e-13	48.9	0.0	5.2e-12	46.0	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|385804067|ref|YP_005840467.1|	-	0.00061	20.0	0.0	0.0014	18.8	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glycogen_syn	PF05693.8	gi|385804067|ref|YP_005840467.1|	-	0.1	10.7	0.0	0.15	10.2	0.0	1.2	1	0	0	1	1	1	0	Glycogen	synthase
Capsule_synth	PF05159.9	gi|385804068|ref|YP_005840468.1|	-	0.00038	20.0	0.1	0.00076	19.0	0.1	1.4	1	0	0	1	1	1	1	Capsule	polysaccharide	biosynthesis	protein
Glyphos_transf	PF04464.9	gi|385804068|ref|YP_005840468.1|	-	0.0026	16.6	0.2	0.014	14.2	0.1	1.9	1	1	0	1	1	1	1	CDP-Glycerol:Poly(glycerophosphate)	glycerophosphotransferase
DUF354	PF04007.7	gi|385804068|ref|YP_005840468.1|	-	0.0064	15.4	0.0	0.012	14.5	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF354)
LpxB	PF02684.10	gi|385804068|ref|YP_005840468.1|	-	0.039	12.5	0.0	0.067	11.8	0.0	1.3	1	0	0	1	1	1	0	Lipid-A-disaccharide	synthetase
MAF_flag10	PF01973.13	gi|385804068|ref|YP_005840468.1|	-	0.085	12.3	0.0	0.28	10.6	0.0	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF115
DUF892	PF05974.7	gi|385804068|ref|YP_005840468.1|	-	0.11	12.3	0.0	0.17	11.6	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF892)
Glycos_transf_N	PF04413.11	gi|385804068|ref|YP_005840468.1|	-	0.15	11.2	0.0	0.41	9.7	0.0	1.8	2	0	0	2	2	2	0	3-Deoxy-D-manno-octulosonic-acid	transferase	(kdotransferase)
DDE_Tnp_1	PF01609.16	gi|385804069|ref|YP_005840469.1|	-	2.2e-22	79.6	3.1	6.5e-22	78.1	2.2	1.7	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_3	PF13612.1	gi|385804069|ref|YP_005840469.1|	-	0.00024	20.9	0.0	0.0004	20.1	0.0	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.1	gi|385804069|ref|YP_005840469.1|	-	0.00058	19.8	0.0	0.0014	18.5	0.0	1.7	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF1989	PF09347.5	gi|385804069|ref|YP_005840469.1|	-	0.0033	16.8	0.2	0.0054	16.2	0.1	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1989)
DDE_Tnp_1_2	PF13586.1	gi|385804069|ref|YP_005840469.1|	-	0.0034	17.5	0.1	0.007	16.5	0.1	1.6	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.6	gi|385804069|ref|YP_005840469.1|	-	0.055	13.3	0.0	0.14	12.0	0.0	1.7	1	0	0	1	1	1	0	Transposase	domain	(DUF772)
Glycos_transf_1	PF00534.15	gi|385804070|ref|YP_005840470.1|	-	1.2e-30	106.2	0.0	1.7e-30	105.7	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|385804070|ref|YP_005840470.1|	-	6.5e-16	58.7	0.0	1.3e-15	57.7	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|385804070|ref|YP_005840470.1|	-	0.00011	22.3	0.0	0.0003	21.0	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glycos_transf_2	PF00535.21	gi|385804071|ref|YP_005840471.1|	-	4.3e-25	88.3	0.1	6.4e-25	87.7	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|385804071|ref|YP_005840471.1|	-	5.3e-12	46.0	0.0	1.1e-11	44.9	0.0	1.6	1	1	1	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.4	gi|385804071|ref|YP_005840471.1|	-	1.5e-07	30.8	1.4	2.3e-07	30.1	0.1	1.9	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.1	gi|385804071|ref|YP_005840471.1|	-	0.00099	18.4	0.0	0.0021	17.3	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_trans_2_3	PF13632.1	gi|385804071|ref|YP_005840471.1|	-	0.0013	18.5	0.1	0.002	17.8	0.1	1.4	1	1	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glycos_transf_2	PF00535.21	gi|385804072|ref|YP_005840472.1|	-	1.2e-18	67.3	0.1	3.6e-18	65.8	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|385804072|ref|YP_005840472.1|	-	6.1e-11	42.5	1.2	9.1e-11	41.9	0.8	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.1	gi|385804072|ref|YP_005840472.1|	-	1.4e-05	25.3	0.1	2.5e-05	24.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
NTP_transf_3	PF12804.2	gi|385804072|ref|YP_005840472.1|	-	3.6e-05	23.8	0.0	5.8e-05	23.2	0.0	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
RHH_1	PF01402.16	gi|385804074|ref|YP_005840474.1|	-	4.9e-05	23.0	0.1	0.00011	21.9	0.0	1.6	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
GvpK	PF05121.7	gi|385804074|ref|YP_005840474.1|	-	0.01	15.6	0.1	0.015	15.0	0.1	1.2	1	0	0	1	1	1	0	Gas	vesicle	protein	K
RHH_2	PF03693.9	gi|385804074|ref|YP_005840474.1|	-	0.012	15.7	0.3	0.076	13.1	0.1	1.8	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0156)
DUF4336	PF14234.1	gi|385804076|ref|YP_005840476.1|	-	0.085	12.0	0.0	0.75	8.9	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4336)
DUF2742	PF10888.3	gi|385804077|ref|YP_005840477.1|	-	0.13	12.1	0.0	0.15	12.0	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2742)
HMGL-like	PF00682.14	gi|385804078|ref|YP_005840478.1|	-	3.4e-71	239.6	3.5	5.4e-71	238.9	2.4	1.3	1	0	0	1	1	1	1	HMGL-like
Lipase_GDSL_2	PF13472.1	gi|385804078|ref|YP_005840478.1|	-	0.00086	19.4	0.6	0.043	13.9	0.2	2.3	2	0	0	2	2	2	1	GDSL-like	Lipase/Acylhydrolase	family
Radical_SAM	PF04055.16	gi|385804078|ref|YP_005840478.1|	-	0.024	14.8	0.2	1.1	9.4	0.0	3.0	2	1	1	3	3	3	0	Radical	SAM	superfamily
DUF2945	PF11160.3	gi|385804079|ref|YP_005840479.1|	-	0.099	12.4	0.1	0.22	11.3	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2945)
TPP_enzyme_C	PF02775.16	gi|385804080|ref|YP_005840480.1|	-	5.1e-50	169.0	0.8	1.2e-49	167.8	0.0	2.0	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_N	PF02776.13	gi|385804080|ref|YP_005840480.1|	-	8.1e-50	168.6	0.4	2.4e-49	167.1	0.2	1.9	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.17	gi|385804080|ref|YP_005840480.1|	-	8.9e-40	135.6	0.3	2.8e-39	134.0	0.0	2.0	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	central	domain
CO_dh	PF02552.11	gi|385804080|ref|YP_005840480.1|	-	0.0084	15.6	0.0	0.014	14.9	0.0	1.4	1	0	0	1	1	1	1	CO	dehydrogenase	beta	subunit/acetyl-CoA	synthase	epsilon	subunit
ALS_ss_C	PF10369.4	gi|385804081|ref|YP_005840481.1|	-	1.4e-20	72.7	0.2	2.9e-20	71.7	0.0	1.6	2	0	0	2	2	2	1	Small	subunit	of	acetolactate	synthase
ACT_5	PF13710.1	gi|385804081|ref|YP_005840481.1|	-	1.6e-18	66.2	0.4	6.6e-18	64.2	0.1	2.0	2	0	0	2	2	2	1	ACT	domain
ACT	PF01842.20	gi|385804081|ref|YP_005840481.1|	-	7.4e-10	38.0	0.5	2.4e-09	36.4	0.1	2.0	2	0	0	2	2	2	1	ACT	domain
ACT_6	PF13740.1	gi|385804081|ref|YP_005840481.1|	-	1.3e-05	24.7	0.1	3.1e-05	23.5	0.0	1.6	2	0	0	2	2	2	1	ACT	domain
ACT_4	PF13291.1	gi|385804081|ref|YP_005840481.1|	-	0.00044	20.5	0.1	0.00092	19.5	0.0	1.5	1	0	0	1	1	1	1	ACT	domain
Phage_rep_org_N	PF09681.5	gi|385804081|ref|YP_005840481.1|	-	0.014	14.9	0.1	0.032	13.8	0.0	1.5	2	0	0	2	2	2	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
IlvN	PF07991.7	gi|385804082|ref|YP_005840482.1|	-	1.2e-68	229.5	0.6	1.7e-68	229.1	0.4	1.2	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
IlvC	PF01450.14	gi|385804082|ref|YP_005840482.1|	-	4.5e-53	179.0	0.1	8.4e-53	178.1	0.0	1.4	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
F420_oxidored	PF03807.12	gi|385804082|ref|YP_005840482.1|	-	8e-08	32.6	0.2	2.2e-07	31.2	0.0	1.8	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.14	gi|385804082|ref|YP_005840482.1|	-	9.7e-07	28.1	0.0	1.9e-06	27.1	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.10	gi|385804082|ref|YP_005840482.1|	-	0.00019	21.2	0.0	0.00042	20.1	0.0	1.6	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Oxidored_nitro	PF00148.14	gi|385804082|ref|YP_005840482.1|	-	0.0033	16.1	0.4	0.0087	14.7	0.0	1.8	2	1	0	2	2	2	1	Nitrogenase	component	1	type	Oxidoreductase
AdoHcyase_NAD	PF00670.16	gi|385804082|ref|YP_005840482.1|	-	0.0034	17.2	0.0	0.0069	16.2	0.0	1.5	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
ApbA	PF02558.11	gi|385804082|ref|YP_005840482.1|	-	0.023	14.1	0.2	0.051	13.0	0.1	1.6	1	1	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
NAD_Gly3P_dh_N	PF01210.18	gi|385804082|ref|YP_005840482.1|	-	0.042	13.5	0.4	0.62	9.7	0.3	2.4	1	1	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
3HCDH_N	PF02737.13	gi|385804082|ref|YP_005840482.1|	-	0.051	13.2	0.3	0.13	11.8	0.0	1.9	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Aconitase	PF00330.15	gi|385804083|ref|YP_005840483.1|	-	7.2e-142	473.1	0.0	8.2e-142	472.9	0.0	1.0	1	0	0	1	1	1	1	Aconitase	family	(aconitate	hydratase)
DUF192	PF02643.10	gi|385804083|ref|YP_005840483.1|	-	0.01	15.5	0.0	1	9.0	0.0	2.7	2	1	1	3	3	3	0	Uncharacterized	ACR,	COG1430
Aconitase_C	PF00694.14	gi|385804084|ref|YP_005840484.1|	-	4.1e-21	75.4	0.0	6e-21	74.9	0.0	1.2	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
GSHPx	PF00255.14	gi|385804084|ref|YP_005840484.1|	-	0.078	12.3	0.0	0.11	11.8	0.0	1.4	1	0	0	1	1	1	0	Glutathione	peroxidase
Iso_dh	PF00180.15	gi|385804085|ref|YP_005840485.1|	-	7.9e-89	298.0	0.1	8.8e-89	297.8	0.1	1.0	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
PTS-HPr	PF00381.14	gi|385804086|ref|YP_005840486.1|	-	4.4e-29	100.1	0.0	4.9e-29	100.0	0.0	1.0	1	0	0	1	1	1	1	PTS	HPr	component	phosphorylation	site
PEP-utilizers_C	PF02896.13	gi|385804087|ref|YP_005840487.1|	-	1.6e-96	322.6	0.0	2.5e-96	322.0	0.0	1.2	1	0	0	1	1	1	1	PEP-utilising	enzyme,	TIM	barrel	domain
PEP-utilisers_N	PF05524.8	gi|385804087|ref|YP_005840487.1|	-	2.7e-27	94.9	0.6	5.3e-27	94.0	0.0	1.8	2	0	0	2	2	2	1	PEP-utilising	enzyme,	N-terminal
PEP-utilizers	PF00391.18	gi|385804087|ref|YP_005840487.1|	-	1.9e-23	81.7	0.4	4.8e-23	80.5	0.3	1.7	1	0	0	1	1	1	1	PEP-utilising	enzyme,	mobile	domain
F_bP_aldolase	PF01116.15	gi|385804088|ref|YP_005840488.1|	-	3.1e-85	285.7	0.0	3.5e-85	285.6	0.0	1.0	1	0	0	1	1	1	1	Fructose-bisphosphate	aldolase	class-II
TIM-br_sig_trns	PF09370.5	gi|385804088|ref|YP_005840488.1|	-	0.1	11.6	0.0	0.31	10.0	0.0	1.7	1	1	1	2	2	2	0	TIM-barrel	signal	transduction	protein
Acetyltransf_1	PF00583.19	gi|385804089|ref|YP_005840489.1|	-	1.1e-11	44.5	0.0	2.6e-11	43.3	0.0	1.6	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.1	gi|385804089|ref|YP_005840489.1|	-	3.1e-11	43.2	0.0	5.3e-11	42.5	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|385804089|ref|YP_005840489.1|	-	5.5e-11	42.6	0.0	7.4e-11	42.1	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|385804089|ref|YP_005840489.1|	-	5.5e-07	29.2	0.0	1e-06	28.3	0.0	1.5	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.1	gi|385804089|ref|YP_005840489.1|	-	0.00019	21.3	0.0	0.0062	16.3	0.0	2.1	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|385804089|ref|YP_005840489.1|	-	0.0014	18.5	0.0	0.0027	17.6	0.0	1.6	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.1	gi|385804089|ref|YP_005840489.1|	-	0.007	16.3	0.0	0.016	15.2	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|385804089|ref|YP_005840489.1|	-	0.016	15.1	0.0	0.028	14.3	0.0	1.6	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|385804089|ref|YP_005840489.1|	-	0.068	13.0	0.0	0.11	12.4	0.0	1.4	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
NTS_2	PF15448.1	gi|385804089|ref|YP_005840489.1|	-	0.36	11.1	1.9	0.72	10.1	1.3	1.5	1	0	0	1	1	1	0	N-terminal	segments	of	P.	falciparum	erythrocyte	membrane	protein
TrmB	PF01978.14	gi|385804090|ref|YP_005840490.1|	-	0.0054	16.4	0.0	0.011	15.3	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|385804090|ref|YP_005840490.1|	-	0.0099	15.6	0.2	0.017	14.8	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|385804090|ref|YP_005840490.1|	-	0.1	12.1	0.1	0.19	11.3	0.1	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
IF-2B	PF01008.12	gi|385804091|ref|YP_005840491.1|	-	6.8e-43	146.6	2.5	8.2e-43	146.4	1.7	1.0	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
DUF3584	PF12128.3	gi|385804091|ref|YP_005840491.1|	-	0.028	11.7	2.1	0.031	11.6	1.4	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
Adaptin_N	PF01602.15	gi|385804091|ref|YP_005840491.1|	-	0.07	11.4	0.8	0.24	9.6	0.2	1.8	1	1	0	2	2	2	0	Adaptin	N	terminal	region
Seryl_tRNA_N	PF02403.17	gi|385804091|ref|YP_005840491.1|	-	0.12	12.4	0.7	0.23	11.4	0.5	1.6	1	1	0	1	1	1	0	Seryl-tRNA	synthetase	N-terminal	domain
CHDCT2	PF08074.6	gi|385804092|ref|YP_005840492.1|	-	0.014	15.1	0.2	0.029	14.1	0.0	1.6	1	1	1	2	2	2	0	CHDCT2	(NUC038)	domain
Neisseria_TspB	PF05616.8	gi|385804092|ref|YP_005840492.1|	-	0.21	9.9	6.0	0.25	9.6	4.2	1.1	1	0	0	1	1	1	0	Neisseria	meningitidis	TspB	protein
Trypan_PARP	PF05887.6	gi|385804092|ref|YP_005840492.1|	-	0.29	10.9	3.2	0.43	10.4	2.2	1.3	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
SpoIIIAH	PF12685.2	gi|385804092|ref|YP_005840492.1|	-	10	5.5	13.5	23	4.4	9.4	1.6	1	1	0	1	1	1	0	SpoIIIAH-like	protein
AAA	PF00004.24	gi|385804094|ref|YP_005840494.1|	-	5e-99	327.6	0.0	3.4e-48	163.1	0.0	2.6	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.13	gi|385804094|ref|YP_005840494.1|	-	1e-22	79.8	0.1	5e-22	77.6	0.1	2.1	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_2	PF07724.9	gi|385804094|ref|YP_005840494.1|	-	1.1e-18	67.7	0.1	2e-08	34.3	0.0	2.6	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.7	gi|385804094|ref|YP_005840494.1|	-	1.4e-16	60.2	0.0	2.9e-08	33.0	0.0	2.7	3	0	0	3	3	3	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_16	PF13191.1	gi|385804094|ref|YP_005840494.1|	-	2.1e-15	57.2	0.2	9.2e-09	35.5	0.0	3.6	3	1	0	3	3	3	2	AAA	ATPase	domain
CDC48_2	PF02933.12	gi|385804094|ref|YP_005840494.1|	-	2.9e-15	55.6	0.1	6.6e-15	54.5	0.1	1.7	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_22	PF13401.1	gi|385804094|ref|YP_005840494.1|	-	2.7e-12	46.9	0.1	0.00042	20.4	0.0	3.8	2	2	0	2	2	2	2	AAA	domain
AAA_14	PF13173.1	gi|385804094|ref|YP_005840494.1|	-	3.8e-11	42.9	0.0	0.00018	21.3	0.0	2.7	3	0	0	3	3	2	2	AAA	domain
AAA_5	PF07728.9	gi|385804094|ref|YP_005840494.1|	-	5.7e-11	42.3	0.4	0.00054	19.7	0.0	4.5	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_17	PF13207.1	gi|385804094|ref|YP_005840494.1|	-	5.7e-11	43.2	0.3	0.00016	22.4	0.1	2.9	2	1	0	2	2	2	2	AAA	domain
AAA_33	PF13671.1	gi|385804094|ref|YP_005840494.1|	-	1.4e-10	41.2	0.0	0.00051	19.9	0.0	2.7	2	1	0	2	2	2	2	AAA	domain
TIP49	PF06068.8	gi|385804094|ref|YP_005840494.1|	-	3.5e-10	39.1	0.0	0.00014	20.7	0.0	2.4	2	0	0	2	2	2	2	TIP49	C-terminus
Zeta_toxin	PF06414.7	gi|385804094|ref|YP_005840494.1|	-	1.5e-09	37.2	0.0	0.0017	17.4	0.0	2.6	2	0	0	2	2	2	2	Zeta	toxin
AAA_19	PF13245.1	gi|385804094|ref|YP_005840494.1|	-	3.5e-09	36.2	0.0	0.00072	19.2	0.0	2.9	2	0	0	2	2	2	2	Part	of	AAA	domain
IstB_IS21	PF01695.12	gi|385804094|ref|YP_005840494.1|	-	2.6e-08	33.4	0.0	0.0031	16.9	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
RNA_helicase	PF00910.17	gi|385804094|ref|YP_005840494.1|	-	5.4e-08	32.9	0.0	0.012	15.8	0.0	2.7	2	0	0	2	2	2	2	RNA	helicase
Mg_chelatase	PF01078.16	gi|385804094|ref|YP_005840494.1|	-	6.5e-08	31.9	0.2	0.0022	17.1	0.0	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_28	PF13521.1	gi|385804094|ref|YP_005840494.1|	-	4.2e-07	30.0	0.0	0.024	14.5	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_3	PF07726.6	gi|385804094|ref|YP_005840494.1|	-	9.3e-07	28.5	0.0	0.009	15.6	0.0	2.6	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.1	gi|385804094|ref|YP_005840494.1|	-	9.6e-07	29.1	0.1	0.01	16.1	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
Sigma54_activat	PF00158.21	gi|385804094|ref|YP_005840494.1|	-	3e-06	26.7	0.0	0.062	12.7	0.0	3.1	3	0	0	3	3	3	2	Sigma-54	interaction	domain
ABC_tran	PF00005.22	gi|385804094|ref|YP_005840494.1|	-	4.2e-06	27.1	0.0	0.077	13.2	0.0	2.7	2	0	0	2	2	2	2	ABC	transporter
AAA_11	PF13086.1	gi|385804094|ref|YP_005840494.1|	-	4.4e-06	26.4	0.0	0.035	13.6	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
Sigma54_activ_2	PF14532.1	gi|385804094|ref|YP_005840494.1|	-	5.3e-06	26.5	0.0	0.087	12.8	0.0	2.6	2	0	0	2	2	2	2	Sigma-54	interaction	domain
DUF815	PF05673.8	gi|385804094|ref|YP_005840494.1|	-	6.6e-06	25.2	0.0	0.016	14.1	0.0	2.7	2	1	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
NACHT	PF05729.7	gi|385804094|ref|YP_005840494.1|	-	6.9e-06	25.8	0.1	0.18	11.4	0.0	3.7	4	0	0	4	4	4	2	NACHT	domain
NB-ARC	PF00931.17	gi|385804094|ref|YP_005840494.1|	-	7.4e-06	25.0	0.0	0.091	11.5	0.0	2.3	2	0	0	2	2	2	2	NB-ARC	domain
PhoH	PF02562.11	gi|385804094|ref|YP_005840494.1|	-	1e-05	24.8	0.2	0.1	11.8	0.0	2.8	3	0	0	3	3	2	2	PhoH-like	protein
AAA_25	PF13481.1	gi|385804094|ref|YP_005840494.1|	-	1.4e-05	24.6	6.9	1.1	8.5	0.1	4.5	3	2	1	5	5	4	3	AAA	domain
DUF2075	PF09848.4	gi|385804094|ref|YP_005840494.1|	-	3.1e-05	23.1	0.0	0.054	12.4	0.0	2.5	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
Arch_ATPase	PF01637.13	gi|385804094|ref|YP_005840494.1|	-	3.1e-05	23.7	0.0	0.45	10.1	0.0	3.2	2	1	1	3	3	3	2	Archaeal	ATPase
KaiC	PF06745.8	gi|385804094|ref|YP_005840494.1|	-	5.6e-05	22.3	0.1	1.1	8.2	0.0	3.4	2	1	1	3	3	3	2	KaiC
AAA_24	PF13479.1	gi|385804094|ref|YP_005840494.1|	-	5.7e-05	22.7	0.0	0.035	13.7	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
Parvo_NS1	PF01057.12	gi|385804094|ref|YP_005840494.1|	-	6.5e-05	21.9	0.0	0.18	10.6	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
AAA_30	PF13604.1	gi|385804094|ref|YP_005840494.1|	-	0.00014	21.5	0.0	0.51	9.8	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
NTPase_1	PF03266.10	gi|385804094|ref|YP_005840494.1|	-	0.00019	21.1	1.1	0.83	9.3	0.0	3.6	2	2	1	3	3	3	2	NTPase
UPF0079	PF02367.12	gi|385804094|ref|YP_005840494.1|	-	0.00058	19.4	0.0	0.85	9.2	0.0	2.4	2	0	0	2	2	2	2	Uncharacterised	P-loop	hydrolase	UPF0079
SKI	PF01202.17	gi|385804094|ref|YP_005840494.1|	-	0.001	18.9	0.0	1.4	8.7	0.0	2.5	2	0	0	2	2	2	1	Shikimate	kinase
ATP-synt_ab	PF00006.20	gi|385804094|ref|YP_005840494.1|	-	0.0011	18.5	0.0	0.41	10.0	0.0	2.4	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
T2SE	PF00437.15	gi|385804094|ref|YP_005840494.1|	-	0.0013	17.6	0.0	1.1	8.0	0.0	2.5	2	0	0	2	2	2	2	Type	II/IV	secretion	system	protein
Bac_DnaA	PF00308.13	gi|385804094|ref|YP_005840494.1|	-	0.0014	18.3	0.0	0.39	10.3	0.0	2.5	2	1	0	2	2	2	1	Bacterial	dnaA	protein
ResIII	PF04851.10	gi|385804094|ref|YP_005840494.1|	-	0.0023	17.8	0.0	2.5	7.8	0.0	2.5	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Guanylate_kin	PF00625.16	gi|385804094|ref|YP_005840494.1|	-	0.0046	16.4	0.4	7.7	5.9	0.0	3.9	2	2	2	4	4	3	0	Guanylate	kinase
Cytidylate_kin2	PF13189.1	gi|385804094|ref|YP_005840494.1|	-	0.011	15.6	0.1	0.54	10.1	0.0	2.4	2	0	0	2	2	2	0	Cytidylate	kinase-like	family
AFG1_ATPase	PF03969.11	gi|385804094|ref|YP_005840494.1|	-	0.012	14.4	0.0	3.2	6.4	0.0	2.4	2	0	0	2	2	2	0	AFG1-like	ATPase
KTI12	PF08433.5	gi|385804094|ref|YP_005840494.1|	-	0.04	13.1	0.2	8.6	5.4	0.0	2.6	3	0	0	3	3	2	0	Chromatin	associated	protein	KTI12
CPT	PF07931.7	gi|385804094|ref|YP_005840494.1|	-	0.043	13.4	0.0	3.4	7.2	0.0	2.4	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
Torsin	PF06309.6	gi|385804094|ref|YP_005840494.1|	-	0.046	13.6	0.0	2.8	7.8	0.0	2.5	2	0	0	2	2	2	0	Torsin
DEAD	PF00270.24	gi|385804094|ref|YP_005840494.1|	-	0.075	12.5	0.9	20	4.5	0.1	3.3	2	2	1	4	4	3	0	DEAD/DEAH	box	helicase
Vps4_C	PF09336.5	gi|385804094|ref|YP_005840494.1|	-	0.081	12.8	0.0	6.8	6.6	0.0	2.9	2	0	0	2	2	2	0	Vps4	C	terminal	oligomerisation	domain
MobB	PF03205.9	gi|385804094|ref|YP_005840494.1|	-	0.091	12.4	0.3	26	4.4	0.0	3.4	3	0	0	3	3	3	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Viral_helicase1	PF01443.13	gi|385804094|ref|YP_005840494.1|	-	0.099	12.1	0.0	7.7	5.9	0.0	2.3	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
AAA_23	PF13476.1	gi|385804094|ref|YP_005840494.1|	-	0.1	12.9	0.1	23	5.2	0.0	3.0	3	0	0	3	3	2	0	AAA	domain
AhpC-TSA	PF00578.16	gi|385804095|ref|YP_005840495.1|	-	1.9e-33	114.7	0.0	2.3e-33	114.5	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|385804095|ref|YP_005840495.1|	-	2.4e-20	72.5	0.0	2.8e-20	72.3	0.0	1.0	1	0	0	1	1	1	1	Redoxin
DUF899	PF05988.7	gi|385804095|ref|YP_005840495.1|	-	0.014	14.8	0.0	0.015	14.6	0.0	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF899)
DNA_primase_S	PF01896.14	gi|385804097|ref|YP_005840497.1|	-	6e-25	87.7	0.0	1.1e-24	86.9	0.0	1.3	1	0	0	1	1	1	1	Eukaryotic	and	archaeal	DNA	primase	small	subunit
Histidinol_dh	PF00815.15	gi|385804098|ref|YP_005840498.1|	-	3.7e-144	480.3	5.2	4.4e-144	480.1	3.6	1.0	1	0	0	1	1	1	1	Histidinol	dehydrogenase
SIP	PF04954.8	gi|385804098|ref|YP_005840498.1|	-	0.47	10.8	3.8	0.52	10.6	1.4	2.1	2	0	0	2	2	2	0	Siderophore-interacting	protein
Fe-S_biosyn	PF01521.15	gi|385804099|ref|YP_005840499.1|	-	3.1e-18	65.7	0.0	3.5e-18	65.5	0.0	1.0	1	0	0	1	1	1	1	Iron-sulphur	cluster	biosynthesis
5_nucleotid_C	PF02872.13	gi|385804101|ref|YP_005840501.1|	-	2.6e-29	102.2	0.0	4.5e-29	101.4	0.0	1.4	1	0	0	1	1	1	1	5'-nucleotidase,	C-terminal	domain
Metallophos_2	PF12850.2	gi|385804101|ref|YP_005840501.1|	-	4.4e-05	23.3	3.5	0.00098	18.9	1.1	2.7	1	1	1	2	2	2	2	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|385804101|ref|YP_005840501.1|	-	5.1e-05	22.7	0.0	8.7e-05	21.9	0.0	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Usp	PF00582.21	gi|385804102|ref|YP_005840502.1|	-	1e-09	38.7	2.0	1.9e-09	37.8	1.4	1.6	1	1	0	1	1	1	1	Universal	stress	protein	family
MS_channel	PF00924.13	gi|385804103|ref|YP_005840503.1|	-	9.4e-37	126.3	0.1	1.4e-36	125.8	0.1	1.2	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
Colicin_V	PF02674.11	gi|385804103|ref|YP_005840503.1|	-	0.099	12.4	8.7	0.17	11.7	6.0	1.3	1	0	0	1	1	1	0	Colicin	V	production	protein
EI24	PF07264.6	gi|385804103|ref|YP_005840503.1|	-	0.72	9.2	7.9	1.2	8.5	5.5	1.2	1	0	0	1	1	1	0	Etoposide-induced	protein	2.4	(EI24)
Regulator_TrmB	PF11495.3	gi|385804104|ref|YP_005840504.1|	-	6.4e-74	247.8	1.1	1.2e-73	246.9	0.5	1.6	2	0	0	2	2	2	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.14	gi|385804104|ref|YP_005840504.1|	-	1.2e-20	72.9	0.0	2.6e-20	71.8	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|385804104|ref|YP_005840504.1|	-	8.1e-06	25.5	0.1	2.1e-05	24.2	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|385804104|ref|YP_005840504.1|	-	8.8e-06	25.3	0.1	2.3e-05	23.9	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.5	gi|385804104|ref|YP_005840504.1|	-	0.00011	21.6	0.1	0.00024	20.6	0.1	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.1	gi|385804104|ref|YP_005840504.1|	-	0.0014	18.0	0.0	0.0042	16.4	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.15	gi|385804104|ref|YP_005840504.1|	-	0.0044	17.1	0.0	0.011	15.8	0.0	1.6	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_5	PF01022.15	gi|385804104|ref|YP_005840504.1|	-	0.0055	16.3	0.0	0.014	15.0	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
DUF2250	PF10007.4	gi|385804104|ref|YP_005840504.1|	-	0.0071	16.2	0.0	0.014	15.2	0.0	1.5	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_CodY	PF08222.6	gi|385804104|ref|YP_005840504.1|	-	0.061	12.6	0.0	0.2	11.0	0.0	1.9	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
Sigma70_r4	PF04545.11	gi|385804104|ref|YP_005840504.1|	-	0.094	12.0	0.1	5.2	6.4	0.0	2.9	2	1	0	2	2	2	0	Sigma-70,	region	4
Phage_rep_org_N	PF09681.5	gi|385804104|ref|YP_005840504.1|	-	0.14	11.6	0.0	0.33	10.5	0.0	1.6	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
Baculo_LEF-11	PF06385.7	gi|385804105|ref|YP_005840505.1|	-	0.1	12.7	0.3	0.23	11.5	0.2	1.6	1	1	0	1	1	1	0	Baculovirus	LEF-11	protein
AAA	PF00004.24	gi|385804106|ref|YP_005840506.1|	-	1.1e-11	45.0	0.0	3.7e-11	43.3	0.0	1.9	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|385804106|ref|YP_005840506.1|	-	1.5e-06	28.3	0.3	7.5e-06	26.1	0.1	2.2	2	1	0	2	2	1	1	AAA	domain
IstB_IS21	PF01695.12	gi|385804106|ref|YP_005840506.1|	-	9.7e-06	25.1	0.1	0.00011	21.7	0.0	2.2	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_17	PF13207.1	gi|385804106|ref|YP_005840506.1|	-	1.5e-05	25.8	0.8	0.00014	22.6	0.5	2.6	1	1	0	1	1	1	1	AAA	domain
RuvB_N	PF05496.7	gi|385804106|ref|YP_005840506.1|	-	2.4e-05	23.4	0.0	5.1e-05	22.4	0.0	1.5	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_5	PF07728.9	gi|385804106|ref|YP_005840506.1|	-	0.0002	21.1	0.1	0.0054	16.4	0.0	2.4	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.1	gi|385804106|ref|YP_005840506.1|	-	0.00059	19.7	0.1	0.002	18.0	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_28	PF13521.1	gi|385804106|ref|YP_005840506.1|	-	0.00066	19.6	0.0	0.002	18.1	0.0	2.0	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|385804106|ref|YP_005840506.1|	-	0.00094	19.2	0.9	0.017	15.1	0.6	2.9	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_18	PF13238.1	gi|385804106|ref|YP_005840506.1|	-	0.0025	18.1	0.1	0.019	15.2	0.0	2.4	1	1	1	2	2	2	1	AAA	domain
AAA_14	PF13173.1	gi|385804106|ref|YP_005840506.1|	-	0.0025	17.6	0.0	0.0071	16.2	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
Zeta_toxin	PF06414.7	gi|385804106|ref|YP_005840506.1|	-	0.003	16.6	0.0	0.0066	15.5	0.0	1.6	1	0	0	1	1	1	1	Zeta	toxin
Rad17	PF03215.10	gi|385804106|ref|YP_005840506.1|	-	0.0048	15.6	0.0	0.44	9.1	0.0	2.9	1	1	1	2	2	2	1	Rad17	cell	cycle	checkpoint	protein
NACHT	PF05729.7	gi|385804106|ref|YP_005840506.1|	-	0.0051	16.4	0.1	0.2	11.2	0.0	2.3	1	1	0	1	1	1	1	NACHT	domain
Viral_helicase1	PF01443.13	gi|385804106|ref|YP_005840506.1|	-	0.008	15.7	0.0	0.016	14.7	0.0	1.5	1	0	0	1	1	1	1	Viral	(Superfamily	1)	RNA	helicase
RNA_helicase	PF00910.17	gi|385804106|ref|YP_005840506.1|	-	0.025	14.7	0.0	0.059	13.5	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
DUF258	PF03193.11	gi|385804106|ref|YP_005840506.1|	-	0.053	12.7	0.0	0.09	11.9	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_19	PF13245.1	gi|385804106|ref|YP_005840506.1|	-	0.078	12.7	2.1	0.23	11.2	0.4	2.6	2	1	0	2	2	2	0	Part	of	AAA	domain
Bac_DnaA	PF00308.13	gi|385804106|ref|YP_005840506.1|	-	0.094	12.3	0.0	1.2	8.7	0.0	2.4	2	0	0	2	2	2	0	Bacterial	dnaA	protein
AAA_3	PF07726.6	gi|385804106|ref|YP_005840506.1|	-	0.12	11.9	0.0	0.23	11.0	0.0	1.4	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ABC_tran	PF00005.22	gi|385804107|ref|YP_005840507.1|	-	1.1e-36	126.1	0.1	1.4e-36	125.7	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385804107|ref|YP_005840507.1|	-	4.7e-12	46.4	0.0	1.7e-05	24.9	0.0	2.2	1	1	1	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|385804107|ref|YP_005840507.1|	-	1.9e-10	40.3	0.2	1.5e-09	37.3	0.1	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_10	PF12846.2	gi|385804107|ref|YP_005840507.1|	-	1.7e-06	27.6	0.0	0.0031	16.9	0.0	2.2	2	0	0	2	2	2	2	AAA-like	domain
AAA_16	PF13191.1	gi|385804107|ref|YP_005840507.1|	-	1.1e-05	25.5	0.2	2e-05	24.6	0.1	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|385804107|ref|YP_005840507.1|	-	3.6e-05	23.2	0.0	7.2e-05	22.2	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.1	gi|385804107|ref|YP_005840507.1|	-	5.7e-05	23.2	0.1	0.00026	21.1	0.0	2.2	2	1	0	2	2	1	1	AAA	domain
DUF258	PF03193.11	gi|385804107|ref|YP_005840507.1|	-	0.00017	20.8	0.0	0.00028	20.1	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
ABC_ATPase	PF09818.4	gi|385804107|ref|YP_005840507.1|	-	0.00026	19.6	0.1	0.92	8.0	0.0	2.9	3	0	0	3	3	3	2	Predicted	ATPase	of	the	ABC	class
Arch_ATPase	PF01637.13	gi|385804107|ref|YP_005840507.1|	-	0.00034	20.3	0.0	0.0032	17.2	0.0	2.2	1	1	0	1	1	1	1	Archaeal	ATPase
AAA_23	PF13476.1	gi|385804107|ref|YP_005840507.1|	-	0.00039	20.7	0.2	0.00093	19.5	0.0	1.6	1	1	1	2	2	2	1	AAA	domain
AAA_19	PF13245.1	gi|385804107|ref|YP_005840507.1|	-	0.00044	19.9	0.0	0.002	17.8	0.0	2.2	1	1	1	2	2	2	1	Part	of	AAA	domain
AAA_30	PF13604.1	gi|385804107|ref|YP_005840507.1|	-	0.0019	17.8	0.0	0.0048	16.5	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
DUF3987	PF13148.1	gi|385804107|ref|YP_005840507.1|	-	0.0045	15.5	0.0	0.0067	15.0	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3987)
AAA_14	PF13173.1	gi|385804107|ref|YP_005840507.1|	-	0.0055	16.6	0.0	0.042	13.7	0.0	2.4	1	1	0	1	1	1	1	AAA	domain
NB-ARC	PF00931.17	gi|385804107|ref|YP_005840507.1|	-	0.0056	15.5	0.0	0.057	12.2	0.0	2.3	2	1	1	3	3	3	1	NB-ARC	domain
AAA_33	PF13671.1	gi|385804107|ref|YP_005840507.1|	-	0.0089	15.9	0.1	0.022	14.6	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|385804107|ref|YP_005840507.1|	-	0.01	16.6	0.6	0.02	15.7	0.4	1.7	1	1	0	1	1	1	0	AAA	domain
MutS_V	PF00488.16	gi|385804107|ref|YP_005840507.1|	-	0.011	15.1	0.0	0.022	14.1	0.0	1.5	1	0	0	1	1	1	0	MutS	domain	V
MMR_HSR1	PF01926.18	gi|385804107|ref|YP_005840507.1|	-	0.012	15.6	0.0	0.034	14.0	0.0	1.9	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_5	PF07728.9	gi|385804107|ref|YP_005840507.1|	-	0.012	15.3	0.0	1.9	8.2	0.0	2.4	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_25	PF13481.1	gi|385804107|ref|YP_005840507.1|	-	0.013	14.9	0.3	0.044	13.1	0.0	1.9	2	1	0	2	2	2	0	AAA	domain
AAA	PF00004.24	gi|385804107|ref|YP_005840507.1|	-	0.013	15.6	0.2	0.72	10.0	0.0	2.9	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SbcCD_C	PF13558.1	gi|385804107|ref|YP_005840507.1|	-	0.016	15.0	0.2	0.18	11.7	0.1	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
NACHT	PF05729.7	gi|385804107|ref|YP_005840507.1|	-	0.028	14.0	0.0	0.084	12.5	0.0	1.8	2	0	0	2	2	1	0	NACHT	domain
MobB	PF03205.9	gi|385804107|ref|YP_005840507.1|	-	0.03	14.0	0.0	0.066	12.9	0.0	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Zeta_toxin	PF06414.7	gi|385804107|ref|YP_005840507.1|	-	0.035	13.1	0.0	0.054	12.5	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA_13	PF13166.1	gi|385804107|ref|YP_005840507.1|	-	0.039	12.4	0.0	0.25	9.7	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_18	PF13238.1	gi|385804107|ref|YP_005840507.1|	-	0.043	14.1	0.0	0.071	13.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.10	gi|385804107|ref|YP_005840507.1|	-	0.05	13.3	0.0	0.37	10.4	0.0	2.3	1	1	0	1	1	1	0	NTPase
T2SE	PF00437.15	gi|385804107|ref|YP_005840507.1|	-	0.062	12.1	0.0	0.098	11.5	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
cobW	PF02492.14	gi|385804107|ref|YP_005840507.1|	-	0.083	12.3	0.0	0.17	11.3	0.0	1.6	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
IstB_IS21	PF01695.12	gi|385804107|ref|YP_005840507.1|	-	0.11	11.8	0.0	0.29	10.5	0.0	1.6	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
Adeno_IVa2	PF02456.10	gi|385804107|ref|YP_005840507.1|	-	0.17	10.4	0.0	0.38	9.3	0.0	1.5	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
BPD_transp_1	PF00528.17	gi|385804108|ref|YP_005840508.1|	-	1.5e-17	63.7	7.1	1.5e-17	63.7	4.9	2.1	2	0	0	2	2	2	2	Binding-protein-dependent	transport	system	inner	membrane	component
MS_channel	PF00924.13	gi|385804108|ref|YP_005840508.1|	-	0.55	9.5	8.7	0.88	8.8	6.0	1.3	1	0	0	1	1	1	0	Mechanosensitive	ion	channel
SBP_bac_3	PF00497.15	gi|385804109|ref|YP_005840509.1|	-	7e-65	218.4	0.7	8.5e-65	218.1	0.5	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	3
NMT1	PF09084.6	gi|385804109|ref|YP_005840509.1|	-	0.0022	17.5	0.0	0.0033	17.0	0.0	1.3	1	0	0	1	1	1	1	NMT1/THI5	like
Phosphonate-bd	PF12974.2	gi|385804109|ref|YP_005840509.1|	-	0.0047	16.3	0.1	0.038	13.3	0.1	2.7	1	1	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
TAT_signal	PF10518.4	gi|385804109|ref|YP_005840509.1|	-	0.014	15.3	0.1	0.028	14.4	0.0	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
COX15-CtaA	PF02628.10	gi|385804110|ref|YP_005840510.1|	-	4.2e-29	101.3	34.7	2.2e-27	95.7	24.1	2.2	1	1	0	1	1	1	1	Cytochrome	oxidase	assembly	protein
VKOR	PF07884.9	gi|385804110|ref|YP_005840510.1|	-	0.014	15.2	2.5	0.014	15.2	1.7	3.6	2	1	2	4	4	4	0	Vitamin	K	epoxide	reductase	family
Hum_adeno_E3A	PF05393.6	gi|385804110|ref|YP_005840510.1|	-	1.1	9.0	3.9	1	9.0	0.2	2.6	2	1	1	3	3	3	0	Human	adenovirus	early	E3A	glycoprotein
Peptidase_M24	PF00557.19	gi|385804111|ref|YP_005840511.1|	-	7.9e-13	48.4	2.2	1.3e-12	47.7	1.5	1.3	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.13	gi|385804111|ref|YP_005840511.1|	-	0.00011	22.7	0.1	0.00039	20.9	0.0	2.0	2	0	0	2	2	2	1	Creatinase/Prolidase	N-terminal	domain
DUF2125	PF09898.4	gi|385804111|ref|YP_005840511.1|	-	0.061	12.6	1.4	0.099	11.9	0.5	1.5	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2125)
PTA_PTB	PF01515.14	gi|385804112|ref|YP_005840512.1|	-	6.9e-95	317.7	0.0	9.6e-95	317.2	0.0	1.2	1	0	0	1	1	1	1	Phosphate	acetyl/butaryl	transferase
Malic_M	PF03949.10	gi|385804112|ref|YP_005840512.1|	-	2.2e-69	233.8	0.9	2.2e-69	233.8	0.6	1.6	2	0	0	2	2	2	1	Malic	enzyme,	NAD	binding	domain
malic	PF00390.14	gi|385804112|ref|YP_005840512.1|	-	1e-28	100.1	0.0	3.4e-26	91.9	0.0	2.4	1	1	0	1	1	1	1	Malic	enzyme,	N-terminal	domain
RNase_H	PF00075.19	gi|385804113|ref|YP_005840513.1|	-	0.0085	16.4	0.0	0.014	15.7	0.0	1.3	1	0	0	1	1	1	1	RNase	H
EamA	PF00892.15	gi|385804114|ref|YP_005840514.1|	-	2e-31	108.6	35.9	4e-17	62.4	11.4	2.4	2	1	0	2	2	2	2	EamA-like	transporter	family
DUF914	PF06027.7	gi|385804114|ref|YP_005840514.1|	-	0.0012	17.7	7.4	0.0019	17.0	5.1	1.3	1	0	0	1	1	1	1	Eukaryotic	protein	of	unknown	function	(DUF914)
TPT	PF03151.11	gi|385804114|ref|YP_005840514.1|	-	0.0062	16.1	9.2	0.0062	16.1	6.3	2.6	3	0	0	3	3	3	2	Triose-phosphate	Transporter	family
MitoNEET_N	PF10660.4	gi|385804114|ref|YP_005840514.1|	-	0.53	10.1	2.6	6.2	6.7	0.2	3.4	3	0	0	3	3	3	0	Iron-containing	outer	mitochondrial	membrane	protein	N-terminus
Cytidylate_kin2	PF13189.1	gi|385804116|ref|YP_005840516.1|	-	3e-20	72.8	0.1	2.4e-19	69.9	0.0	1.9	1	1	0	1	1	1	1	Cytidylate	kinase-like	family
AAA_18	PF13238.1	gi|385804116|ref|YP_005840516.1|	-	5.1e-18	65.6	0.0	6.8e-18	65.2	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|385804116|ref|YP_005840516.1|	-	1.5e-09	38.7	0.2	1.9e-09	38.3	0.1	1.3	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.1	gi|385804116|ref|YP_005840516.1|	-	5.3e-05	23.2	0.5	0.00035	20.5	0.0	2.0	1	1	1	2	2	2	1	AAA	domain
AAA_33	PF13671.1	gi|385804116|ref|YP_005840516.1|	-	7.1e-05	22.7	0.1	0.00018	21.3	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
ADK	PF00406.17	gi|385804116|ref|YP_005840516.1|	-	0.00033	20.5	0.0	0.0011	18.8	0.0	1.8	2	0	0	2	2	2	1	Adenylate	kinase
AAA	PF00004.24	gi|385804116|ref|YP_005840516.1|	-	0.00062	19.9	0.0	0.0016	18.6	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
SKI	PF01202.17	gi|385804116|ref|YP_005840516.1|	-	0.0009	19.1	0.5	0.0077	16.1	0.3	2.0	1	1	0	1	1	1	1	Shikimate	kinase
AAA_19	PF13245.1	gi|385804116|ref|YP_005840516.1|	-	0.0056	16.4	0.0	0.01	15.5	0.0	1.6	1	1	0	1	1	1	1	Part	of	AAA	domain
RHH_4	PF13467.1	gi|385804116|ref|YP_005840516.1|	-	0.025	14.4	0.1	0.071	12.9	0.1	1.8	1	1	0	1	1	1	0	Ribbon-helix-helix	domain
Cytidylate_kin	PF02224.13	gi|385804116|ref|YP_005840516.1|	-	0.033	13.6	0.1	0.052	12.9	0.0	1.3	1	0	0	1	1	1	0	Cytidylate	kinase
DUF1684	PF07920.6	gi|385804117|ref|YP_005840517.1|	-	3.6e-56	188.9	0.2	1.2e-55	187.2	0.2	1.7	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1684)
SdpI	PF13630.1	gi|385804118|ref|YP_005840518.1|	-	0.073	12.7	1.3	0.084	12.5	0.9	1.1	1	0	0	1	1	1	0	SdpI/YhfL	protein	family
DUF973	PF06157.6	gi|385804118|ref|YP_005840518.1|	-	0.12	11.3	0.7	0.13	11.2	0.5	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF973)
DUF872	PF05915.7	gi|385804118|ref|YP_005840518.1|	-	1	9.2	3.1	8.2	6.3	1.8	1.9	1	1	1	2	2	2	0	Eukaryotic	protein	of	unknown	function	(DUF872)
Ribosomal_S10	PF00338.17	gi|385804119|ref|YP_005840519.1|	-	2.9e-12	46.2	0.0	3.5e-12	46.0	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
Peptidase_M20	PF01546.23	gi|385804120|ref|YP_005840520.1|	-	7.8e-14	51.6	12.1	1.9e-07	30.8	5.5	3.1	2	1	0	2	2	2	2	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|385804120|ref|YP_005840520.1|	-	3.4e-13	49.3	0.8	3.4e-13	49.3	0.5	2.1	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
DUF1761	PF08570.5	gi|385804121|ref|YP_005840521.1|	-	0.24	11.4	3.7	0.25	11.3	2.6	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1761)
PhoU	PF01895.14	gi|385804122|ref|YP_005840522.1|	-	2.8e-10	40.5	7.0	6.6e-10	39.2	0.1	2.8	2	1	0	2	2	2	1	PhoU	domain
Antitoxin-MazE	PF04014.13	gi|385804122|ref|YP_005840522.1|	-	1.5e-06	27.7	0.0	2.9e-06	26.8	0.0	1.4	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
NAD_kinase	PF01513.16	gi|385804123|ref|YP_005840523.1|	-	5e-43	146.9	0.3	5.7e-43	146.7	0.2	1.0	1	0	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.19	gi|385804123|ref|YP_005840523.1|	-	1.8e-05	24.1	1.7	8e-05	22.0	0.0	2.6	3	0	0	3	3	3	1	Diacylglycerol	kinase	catalytic	domain
DeoRC	PF00455.17	gi|385804123|ref|YP_005840523.1|	-	0.19	11.3	1.1	14	5.2	0.1	2.2	2	0	0	2	2	2	0	DeoR	C	terminal	sensor	domain
SMP	PF04927.7	gi|385804123|ref|YP_005840523.1|	-	6.6	6.7	10.9	0.61	10.0	1.0	3.1	3	0	0	3	3	3	0	Seed	maturation	protein
zf-ribbon_3	PF13248.1	gi|385804124|ref|YP_005840524.1|	-	0.00033	19.7	0.3	0.00055	19.0	0.2	1.4	1	1	0	1	1	1	1	zinc-ribbon	domain
Nudix_N_2	PF14803.1	gi|385804124|ref|YP_005840524.1|	-	0.0062	16.1	1.1	0.04	13.6	0.8	2.0	1	1	0	1	1	1	1	Nudix	N-terminal
DZR	PF12773.2	gi|385804124|ref|YP_005840524.1|	-	0.0063	16.3	0.8	0.012	15.3	0.5	1.5	1	1	0	1	1	1	1	Double	zinc	ribbon
zf-NADH-PPase	PF09297.6	gi|385804124|ref|YP_005840524.1|	-	0.013	15.0	2.2	0.13	11.8	0.1	2.3	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
UPF0547	PF10571.4	gi|385804124|ref|YP_005840524.1|	-	0.015	15.0	1.5	0.51	10.0	0.1	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
OrfB_Zn_ribbon	PF07282.6	gi|385804124|ref|YP_005840524.1|	-	0.024	14.2	0.4	1	9.0	0.0	2.1	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
zinc_ribbon_2	PF13240.1	gi|385804124|ref|YP_005840524.1|	-	0.032	13.7	1.7	3.5	7.2	0.1	2.3	2	1	0	2	2	2	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|385804124|ref|YP_005840524.1|	-	4	7.3	5.2	4.4	7.2	0.4	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
PAS_9	PF13426.1	gi|385804125|ref|YP_005840525.1|	-	3.8e-06	27.2	0.0	1.4e-05	25.3	0.0	2.0	2	0	0	2	2	2	1	PAS	domain
PAS_4	PF08448.5	gi|385804125|ref|YP_005840525.1|	-	0.00019	21.4	0.0	0.00047	20.1	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
PAS	PF00989.19	gi|385804125|ref|YP_005840525.1|	-	0.00093	18.9	0.0	0.0034	17.1	0.0	1.9	1	1	0	1	1	1	1	PAS	fold
PAS_8	PF13188.1	gi|385804125|ref|YP_005840525.1|	-	0.0015	18.2	0.0	0.0045	16.7	0.0	1.7	1	0	0	1	1	1	1	PAS	domain
HATPase_c	PF02518.21	gi|385804125|ref|YP_005840525.1|	-	0.043	13.5	0.1	0.13	11.9	0.1	2.0	1	1	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DHHW	PF14286.1	gi|385804125|ref|YP_005840525.1|	-	0.47	9.7	6.2	0.056	12.7	1.3	1.6	2	0	0	2	2	2	0	DHHW	protein
HTH_10	PF04967.7	gi|385804126|ref|YP_005840526.1|	-	2.1e-19	68.8	0.0	4.7e-19	67.7	0.0	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Response_reg	PF00072.19	gi|385804126|ref|YP_005840526.1|	-	2.4e-15	56.5	1.6	6.5e-15	55.1	1.1	1.8	1	0	0	1	1	1	1	Response	regulator	receiver	domain
GAF_2	PF13185.1	gi|385804126|ref|YP_005840526.1|	-	0.0073	16.8	0.0	0.018	15.5	0.0	1.7	1	0	0	1	1	1	1	GAF	domain
Borrelia_lipo_2	PF06238.6	gi|385804126|ref|YP_005840526.1|	-	0.012	15.6	0.2	0.079	13.0	0.0	2.4	2	1	0	2	2	2	0	Borrelia	burgdorferi	BBR25	lipoprotein
HalX	PF08663.5	gi|385804126|ref|YP_005840526.1|	-	0.016	15.1	1.4	0.076	13.0	1.0	2.2	1	0	0	1	1	1	0	HalX	domain
Baculo_PEP_C	PF04513.7	gi|385804126|ref|YP_005840526.1|	-	1.6	8.5	7.7	12	5.7	1.5	2.9	2	1	0	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Response_reg	PF00072.19	gi|385804127|ref|YP_005840527.1|	-	1.9e-12	47.1	0.3	8.2e-12	45.1	0.2	1.9	1	1	0	1	1	1	1	Response	regulator	receiver	domain
C1_1	PF00130.17	gi|385804128|ref|YP_005840528.1|	-	0.0074	15.9	0.3	0.71	9.6	0.0	2.1	2	0	0	2	2	2	1	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Rpr2	PF04032.11	gi|385804128|ref|YP_005840528.1|	-	0.017	14.9	0.9	0.021	14.6	0.6	1.2	1	0	0	1	1	1	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
DZR	PF12773.2	gi|385804128|ref|YP_005840528.1|	-	0.018	14.8	2.3	0.036	13.8	1.6	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
ADK_lid	PF05191.9	gi|385804128|ref|YP_005840528.1|	-	0.039	13.6	0.5	1.7	8.3	0.0	2.2	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
zf-dskA_traR	PF01258.12	gi|385804128|ref|YP_005840528.1|	-	0.051	13.3	2.3	0.14	11.9	0.1	2.1	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
Ecl1	PF12855.2	gi|385804128|ref|YP_005840528.1|	-	0.075	12.3	0.9	2.4	7.5	0.0	2.2	2	0	0	2	2	2	0	Life-span	regulatory	factor
zf-DNL	PF05180.7	gi|385804128|ref|YP_005840528.1|	-	0.096	12.4	2.9	1.3	8.7	0.1	2.6	1	1	2	3	3	3	0	DNL	zinc	finger
NOB1_Zn_bind	PF08772.6	gi|385804128|ref|YP_005840528.1|	-	0.11	12.3	1.1	1.1	9.1	0.1	2.0	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
DAN	PF03045.10	gi|385804128|ref|YP_005840528.1|	-	0.13	11.6	1.4	0.14	11.5	1.0	1.1	1	0	0	1	1	1	0	DAN	domain
Copper-fist	PF00649.13	gi|385804128|ref|YP_005840528.1|	-	0.16	11.2	0.6	0.36	10.0	0.0	1.9	2	0	0	2	2	2	0	Copper	fist	DNA	binding	domain
CpXC	PF14353.1	gi|385804128|ref|YP_005840528.1|	-	0.17	11.8	1.4	0.21	11.5	1.0	1.1	1	0	0	1	1	1	0	CpXC	protein
YhfH	PF14149.1	gi|385804128|ref|YP_005840528.1|	-	0.29	10.9	0.6	0.29	10.9	0.4	1.7	2	0	0	2	2	2	0	YhfH-like	protein
DEAD_assoc	PF08494.6	gi|385804129|ref|YP_005840529.1|	-	1.9e-39	135.3	0.4	5.2e-39	133.9	0.1	1.9	2	0	0	2	2	2	1	DEAD/H	associated
DEAD	PF00270.24	gi|385804129|ref|YP_005840529.1|	-	2.2e-30	105.3	0.0	5e-28	97.6	0.0	2.4	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|385804129|ref|YP_005840529.1|	-	5.8e-18	64.5	0.1	3.2e-17	62.1	0.0	2.2	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|385804129|ref|YP_005840529.1|	-	5.5e-08	32.8	0.0	1e-07	31.9	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_19	PF13245.1	gi|385804129|ref|YP_005840529.1|	-	0.016	14.9	0.0	0.099	12.4	0.0	2.5	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_11	PF13086.1	gi|385804129|ref|YP_005840529.1|	-	0.092	12.3	0.0	1.4	8.4	0.0	2.3	1	1	1	2	2	2	0	AAA	domain
AAA	PF00004.24	gi|385804130|ref|YP_005840530.1|	-	5.4e-94	311.3	0.0	3.3e-46	156.7	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.13	gi|385804130|ref|YP_005840530.1|	-	2.2e-21	75.5	0.9	5.4e-21	74.3	0.1	2.1	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_16	PF13191.1	gi|385804130|ref|YP_005840530.1|	-	3.4e-13	49.9	0.0	2.1e-05	24.5	0.0	3.4	2	1	0	2	2	2	2	AAA	ATPase	domain
RuvB_N	PF05496.7	gi|385804130|ref|YP_005840530.1|	-	5e-13	48.6	0.1	1.1e-05	24.6	0.0	3.2	4	0	0	4	4	3	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_2	PF07724.9	gi|385804130|ref|YP_005840530.1|	-	1.5e-12	47.7	0.0	1.6e-06	28.1	0.0	2.5	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_17	PF13207.1	gi|385804130|ref|YP_005840530.1|	-	6.7e-11	43.0	0.0	8.6e-05	23.3	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_22	PF13401.1	gi|385804130|ref|YP_005840530.1|	-	7.4e-11	42.3	0.1	0.002	18.2	0.0	4.1	2	2	0	2	2	2	2	AAA	domain
AAA_14	PF13173.1	gi|385804130|ref|YP_005840530.1|	-	2.9e-10	40.1	0.0	0.00048	20.0	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_33	PF13671.1	gi|385804130|ref|YP_005840530.1|	-	3.8e-10	39.7	0.0	0.00016	21.5	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_19	PF13245.1	gi|385804130|ref|YP_005840530.1|	-	4.4e-10	39.1	1.3	0.00074	19.2	0.1	3.5	2	0	0	2	2	2	2	Part	of	AAA	domain
AAA_5	PF07728.9	gi|385804130|ref|YP_005840530.1|	-	8.2e-10	38.5	0.2	0.0016	18.2	0.0	3.8	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
TIP49	PF06068.8	gi|385804130|ref|YP_005840530.1|	-	4e-09	35.6	0.0	0.00022	20.0	0.0	2.2	2	0	0	2	2	2	2	TIP49	C-terminus
Zeta_toxin	PF06414.7	gi|385804130|ref|YP_005840530.1|	-	1.5e-08	33.9	0.0	0.00065	18.8	0.0	2.5	2	0	0	2	2	2	2	Zeta	toxin
AAA_28	PF13521.1	gi|385804130|ref|YP_005840530.1|	-	1.1e-07	31.9	0.0	0.0091	15.9	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.12	gi|385804130|ref|YP_005840530.1|	-	1.1e-07	31.4	0.3	0.012	15.0	0.0	2.6	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_18	PF13238.1	gi|385804130|ref|YP_005840530.1|	-	2e-06	28.1	0.0	0.04	14.2	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
Mg_chelatase	PF01078.16	gi|385804130|ref|YP_005840530.1|	-	3e-06	26.5	0.2	0.072	12.2	0.0	2.3	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
CDC48_2	PF02933.12	gi|385804130|ref|YP_005840530.1|	-	3.4e-06	26.5	0.1	1.3e-05	24.7	0.1	2.0	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
RNA_helicase	PF00910.17	gi|385804130|ref|YP_005840530.1|	-	3.8e-06	27.0	0.0	0.063	13.4	0.0	2.8	3	0	0	3	3	2	2	RNA	helicase
AAA_3	PF07726.6	gi|385804130|ref|YP_005840530.1|	-	5.1e-06	26.1	0.0	0.046	13.3	0.0	2.7	3	0	0	3	3	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
ABC_tran	PF00005.22	gi|385804130|ref|YP_005840530.1|	-	9.5e-06	25.9	0.0	0.12	12.6	0.0	2.7	2	0	0	2	2	2	2	ABC	transporter
AAA_25	PF13481.1	gi|385804130|ref|YP_005840530.1|	-	2.5e-05	23.7	8.3	0.25	10.7	0.1	4.4	2	2	1	4	4	4	2	AAA	domain
Sigma54_activat	PF00158.21	gi|385804130|ref|YP_005840530.1|	-	3.2e-05	23.4	0.0	0.31	10.4	0.0	3.6	3	2	0	3	3	3	2	Sigma-54	interaction	domain
PhoH	PF02562.11	gi|385804130|ref|YP_005840530.1|	-	0.0001	21.6	0.2	0.43	9.7	0.0	2.7	2	0	0	2	2	2	2	PhoH-like	protein
Parvo_NS1	PF01057.12	gi|385804130|ref|YP_005840530.1|	-	0.00013	20.9	0.0	0.35	9.7	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
NACHT	PF05729.7	gi|385804130|ref|YP_005840530.1|	-	0.00014	21.5	0.1	1.9	8.1	0.0	3.4	3	0	0	3	3	3	2	NACHT	domain
DUF2075	PF09848.4	gi|385804130|ref|YP_005840530.1|	-	0.00019	20.5	0.0	0.16	10.8	0.0	2.3	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
AAA_11	PF13086.1	gi|385804130|ref|YP_005840530.1|	-	0.0002	21.0	0.0	0.45	10.0	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_24	PF13479.1	gi|385804130|ref|YP_005840530.1|	-	0.00047	19.8	0.5	0.19	11.3	0.1	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.1	gi|385804130|ref|YP_005840530.1|	-	0.00055	19.5	0.0	0.51	9.8	0.0	2.8	2	0	0	2	2	2	1	AAA	domain
DUF815	PF05673.8	gi|385804130|ref|YP_005840530.1|	-	0.00055	18.9	0.0	1.3	7.8	0.0	3.0	2	2	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
NB-ARC	PF00931.17	gi|385804130|ref|YP_005840530.1|	-	0.00062	18.7	0.0	0.18	10.6	0.0	2.2	2	0	0	2	2	2	1	NB-ARC	domain
Sigma54_activ_2	PF14532.1	gi|385804130|ref|YP_005840530.1|	-	0.00089	19.3	0.0	1.1	9.3	0.0	2.5	2	0	0	2	2	2	1	Sigma-54	interaction	domain
UPF0079	PF02367.12	gi|385804130|ref|YP_005840530.1|	-	0.0016	18.0	0.0	1.2	8.7	0.0	2.4	2	0	0	2	2	2	1	Uncharacterised	P-loop	hydrolase	UPF0079
Cytidylate_kin2	PF13189.1	gi|385804130|ref|YP_005840530.1|	-	0.0026	17.6	0.0	0.18	11.6	0.0	2.4	2	0	0	2	2	2	1	Cytidylate	kinase-like	family
KaiC	PF06745.8	gi|385804130|ref|YP_005840530.1|	-	0.0028	16.8	0.1	1.7	7.6	0.0	3.0	3	0	0	3	3	3	1	KaiC
SKI	PF01202.17	gi|385804130|ref|YP_005840530.1|	-	0.0029	17.5	0.0	1.4	8.7	0.0	2.6	2	0	0	2	2	2	1	Shikimate	kinase
Arch_ATPase	PF01637.13	gi|385804130|ref|YP_005840530.1|	-	0.0033	17.1	0.0	5.6	6.5	0.0	3.2	2	2	2	4	4	4	0	Archaeal	ATPase
NTPase_1	PF03266.10	gi|385804130|ref|YP_005840530.1|	-	0.0065	16.1	0.1	1.3	8.7	0.0	3.0	2	1	0	3	3	2	1	NTPase
CPT	PF07931.7	gi|385804130|ref|YP_005840530.1|	-	0.007	16.0	0.0	0.27	10.8	0.0	2.5	2	0	0	2	2	2	1	Chloramphenicol	phosphotransferase-like	protein
ResIII	PF04851.10	gi|385804130|ref|YP_005840530.1|	-	0.0076	16.0	0.0	3	7.6	0.0	2.7	2	1	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Viral_helicase1	PF01443.13	gi|385804130|ref|YP_005840530.1|	-	0.016	14.7	0.0	0.81	9.1	0.0	2.8	3	0	0	3	3	3	0	Viral	(Superfamily	1)	RNA	helicase
Torsin	PF06309.6	gi|385804130|ref|YP_005840530.1|	-	0.082	12.7	0.0	2	8.3	0.0	2.4	2	0	0	2	2	2	0	Torsin
Bac_DnaA	PF00308.13	gi|385804130|ref|YP_005840530.1|	-	0.15	11.6	0.0	25	4.4	0.0	2.4	2	0	0	2	2	2	0	Bacterial	dnaA	protein
AAA_23	PF13476.1	gi|385804130|ref|YP_005840530.1|	-	0.16	12.3	0.1	20	5.4	0.0	2.6	2	0	0	2	2	2	0	AAA	domain
Peripla_BP_6	PF13458.1	gi|385804131|ref|YP_005840531.1|	-	2.9e-46	158.4	5.3	5e-46	157.6	3.7	1.4	1	0	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.23	gi|385804131|ref|YP_005840531.1|	-	1.1e-28	100.0	1.0	1.3e-28	99.8	0.7	1.1	1	0	0	1	1	1	1	Receptor	family	ligand	binding	region
Peripla_BP_5	PF13433.1	gi|385804131|ref|YP_005840531.1|	-	1.5e-15	56.8	1.9	7.2e-12	44.7	0.0	2.0	2	0	0	2	2	2	2	Periplasmic	binding	protein	domain
TAT_signal	PF10518.4	gi|385804131|ref|YP_005840531.1|	-	0.048	13.6	2.4	0.15	12.1	1.7	1.9	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_2	PF02653.11	gi|385804132|ref|YP_005840532.1|	-	1.2e-34	119.5	42.3	1.5e-34	119.1	29.3	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
DUF106	PF01956.11	gi|385804132|ref|YP_005840532.1|	-	0.69	9.4	3.2	1.1	8.8	0.6	2.4	1	1	1	2	2	2	0	Integral	membrane	protein	DUF106
BPD_transp_2	PF02653.11	gi|385804133|ref|YP_005840533.1|	-	2.4e-47	161.1	32.7	2.8e-47	160.9	22.7	1.1	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
HCV_NS4a	PF01006.15	gi|385804133|ref|YP_005840533.1|	-	0.018	14.5	4.8	0.046	13.2	1.7	2.5	2	0	0	2	2	2	0	Hepatitis	C	virus	non-structural	protein	NS4a
Coa1	PF08695.5	gi|385804133|ref|YP_005840533.1|	-	0.11	11.9	0.0	0.25	10.8	0.0	1.6	1	0	0	1	1	1	0	Cytochrome	oxidase	complex	assembly	protein	1
ABC_tran	PF00005.22	gi|385804134|ref|YP_005840534.1|	-	1.7e-34	119.0	0.0	2.3e-34	118.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385804134|ref|YP_005840534.1|	-	7.6e-14	52.3	2.0	6.9e-12	45.9	1.4	2.1	1	1	0	1	1	1	1	AAA	domain
BCA_ABC_TP_C	PF12399.3	gi|385804134|ref|YP_005840534.1|	-	1.5e-07	30.9	0.0	2.6e-07	30.1	0.0	1.5	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_23	PF13476.1	gi|385804134|ref|YP_005840534.1|	-	1.7e-06	28.5	1.7	2e-06	28.2	0.6	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|385804134|ref|YP_005840534.1|	-	1.5e-05	24.4	0.2	2.9e-05	23.5	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|385804134|ref|YP_005840534.1|	-	0.00029	20.8	0.8	0.4	10.6	0.1	2.2	2	0	0	2	2	2	2	AAA	ATPase	domain
SMC_N	PF02463.14	gi|385804134|ref|YP_005840534.1|	-	0.0007	18.8	1.7	0.026	13.7	1.2	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
DUF258	PF03193.11	gi|385804134|ref|YP_005840534.1|	-	0.0016	17.6	0.1	0.0026	16.9	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_15	PF13175.1	gi|385804134|ref|YP_005840534.1|	-	0.0054	15.8	0.2	0.59	9.1	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
MMR_HSR1	PF01926.18	gi|385804134|ref|YP_005840534.1|	-	0.0081	16.1	0.1	0.017	15.0	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
Mg_chelatase	PF01078.16	gi|385804134|ref|YP_005840534.1|	-	0.092	11.8	0.0	0.16	11.0	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_30	PF13604.1	gi|385804134|ref|YP_005840534.1|	-	0.13	11.8	0.0	0.23	11.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|385804134|ref|YP_005840534.1|	-	0.36	10.9	2.4	3.6	7.7	0.1	2.3	2	1	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.22	gi|385804135|ref|YP_005840535.1|	-	3.6e-30	105.0	0.0	5.4e-30	104.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385804135|ref|YP_005840535.1|	-	1.8e-12	47.8	0.4	2.6e-05	24.3	0.0	2.2	1	1	0	2	2	2	2	AAA	domain
AAA_22	PF13401.1	gi|385804135|ref|YP_005840535.1|	-	9.4e-07	29.0	0.0	1.9e-06	28.0	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.1	gi|385804135|ref|YP_005840535.1|	-	1.3e-06	28.9	0.0	1.7e-06	28.5	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|385804135|ref|YP_005840535.1|	-	2.2e-06	27.3	0.1	0.012	15.0	0.0	2.1	1	1	0	2	2	2	2	AAA-like	domain
AAA_29	PF13555.1	gi|385804135|ref|YP_005840535.1|	-	8.7e-06	25.1	0.0	2.1e-05	23.9	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.14	gi|385804135|ref|YP_005840535.1|	-	4e-05	22.9	0.0	0.021	14.0	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.1	gi|385804135|ref|YP_005840535.1|	-	0.00013	22.0	0.0	0.0027	17.6	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.24	gi|385804135|ref|YP_005840535.1|	-	0.00017	21.7	0.0	0.00099	19.3	0.0	2.2	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_15	PF13175.1	gi|385804135|ref|YP_005840535.1|	-	0.00017	20.7	0.1	0.17	10.9	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_17	PF13207.1	gi|385804135|ref|YP_005840535.1|	-	0.00028	21.7	0.0	0.00048	20.9	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
Arch_ATPase	PF01637.13	gi|385804135|ref|YP_005840535.1|	-	0.00041	20.1	0.0	0.00055	19.7	0.0	1.3	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_33	PF13671.1	gi|385804135|ref|YP_005840535.1|	-	0.00054	19.8	0.0	0.00099	18.9	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
Mg_chelatase	PF01078.16	gi|385804135|ref|YP_005840535.1|	-	0.0018	17.4	0.0	0.17	11.0	0.0	2.1	1	1	1	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
SbcCD_C	PF13558.1	gi|385804135|ref|YP_005840535.1|	-	0.0019	18.1	0.1	0.031	14.1	0.1	2.2	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
DUF258	PF03193.11	gi|385804135|ref|YP_005840535.1|	-	0.0019	17.4	0.0	0.0031	16.7	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_14	PF13173.1	gi|385804135|ref|YP_005840535.1|	-	0.0044	16.9	0.0	0.041	13.7	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.1	gi|385804135|ref|YP_005840535.1|	-	0.0087	15.4	0.0	0.032	13.6	0.0	2.0	1	1	1	2	2	2	1	AAA	domain
Zeta_toxin	PF06414.7	gi|385804135|ref|YP_005840535.1|	-	0.009	15.1	0.0	0.016	14.3	0.0	1.3	1	0	0	1	1	1	1	Zeta	toxin
DUF815	PF05673.8	gi|385804135|ref|YP_005840535.1|	-	0.011	14.6	0.0	0.018	13.9	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
AAA_13	PF13166.1	gi|385804135|ref|YP_005840535.1|	-	0.011	14.2	0.0	0.024	13.1	0.0	1.5	2	0	0	2	2	2	0	AAA	domain
AAA_18	PF13238.1	gi|385804135|ref|YP_005840535.1|	-	0.011	15.9	0.0	0.022	15.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|385804135|ref|YP_005840535.1|	-	0.012	15.1	0.0	0.033	13.6	0.0	1.6	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
UPF0079	PF02367.12	gi|385804135|ref|YP_005840535.1|	-	0.022	14.3	0.0	0.041	13.5	0.0	1.4	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_28	PF13521.1	gi|385804135|ref|YP_005840535.1|	-	0.024	14.5	0.0	0.16	11.9	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
Guanylate_kin	PF00625.16	gi|385804135|ref|YP_005840535.1|	-	0.027	13.9	0.0	0.16	11.3	0.0	2.1	2	0	0	2	2	2	0	Guanylate	kinase
T2SE	PF00437.15	gi|385804135|ref|YP_005840535.1|	-	0.033	13.1	0.0	0.057	12.3	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
ATP_bind_1	PF03029.12	gi|385804135|ref|YP_005840535.1|	-	0.037	13.5	0.0	0.073	12.5	0.0	1.5	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_24	PF13479.1	gi|385804135|ref|YP_005840535.1|	-	0.04	13.4	0.0	0.077	12.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Dynamin_N	PF00350.18	gi|385804135|ref|YP_005840535.1|	-	0.045	13.5	0.0	0.11	12.2	0.0	1.6	2	0	0	2	2	2	0	Dynamin	family
Rad17	PF03215.10	gi|385804135|ref|YP_005840535.1|	-	0.052	12.2	0.0	0.061	12.0	0.0	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
MMR_HSR1	PF01926.18	gi|385804135|ref|YP_005840535.1|	-	0.053	13.4	0.0	0.069	13.1	0.0	1.6	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
MobB	PF03205.9	gi|385804135|ref|YP_005840535.1|	-	0.057	13.1	0.0	0.1	12.2	0.0	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NTPase_1	PF03266.10	gi|385804135|ref|YP_005840535.1|	-	0.061	13.0	0.0	0.47	10.1	0.0	2.1	2	0	0	2	2	2	0	NTPase
MutS_V	PF00488.16	gi|385804135|ref|YP_005840535.1|	-	0.061	12.7	0.0	0.098	12.0	0.0	1.2	1	0	0	1	1	1	0	MutS	domain	V
RNA_helicase	PF00910.17	gi|385804135|ref|YP_005840535.1|	-	0.077	13.1	0.0	0.13	12.4	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
Miro	PF08477.8	gi|385804135|ref|YP_005840535.1|	-	0.087	13.3	0.0	0.25	11.8	0.0	1.8	2	0	0	2	2	1	0	Miro-like	protein
AAA_30	PF13604.1	gi|385804135|ref|YP_005840535.1|	-	0.094	12.2	0.0	0.62	9.6	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.12	gi|385804135|ref|YP_005840535.1|	-	0.098	12.0	0.0	0.3	10.4	0.0	1.7	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
DBI_PRT	PF02277.12	gi|385804135|ref|YP_005840535.1|	-	0.11	11.5	0.0	0.31	10.1	0.0	1.6	2	0	0	2	2	2	0	Phosphoribosyltransferase
ABC_ATPase	PF09818.4	gi|385804135|ref|YP_005840535.1|	-	0.12	10.9	0.0	0.47	8.9	0.0	1.8	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
NB-ARC	PF00931.17	gi|385804135|ref|YP_005840535.1|	-	0.14	11.0	0.0	0.5	9.1	0.0	1.7	2	0	0	2	2	2	0	NB-ARC	domain
zf-C2H2_3	PF13878.1	gi|385804136|ref|YP_005840536.1|	-	0.0019	17.7	3.2	0.0028	17.1	2.2	1.3	1	0	0	1	1	1	1	zinc-finger	of	acetyl-transferase	ESCO
zf-C2H2_4	PF13894.1	gi|385804136|ref|YP_005840536.1|	-	0.069	13.5	0.5	0.1	13.0	0.4	1.3	1	0	0	1	1	1	0	C2H2-type	zinc	finger
C1_4	PF07975.7	gi|385804136|ref|YP_005840536.1|	-	0.077	13.0	1.1	0.093	12.7	0.7	1.1	1	0	0	1	1	1	0	TFIIH	C1-like	domain
GHMP_kinases_N	PF00288.21	gi|385804138|ref|YP_005840538.1|	-	7.4e-10	38.7	2.5	1.3e-09	37.9	0.9	2.1	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
CM_2	PF01817.16	gi|385804139|ref|YP_005840539.1|	-	2.5e-18	65.9	2.4	3.1e-18	65.6	1.7	1.1	1	0	0	1	1	1	1	Chorismate	mutase	type	II
DUF2461	PF09365.5	gi|385804139|ref|YP_005840539.1|	-	0.11	11.9	0.0	0.12	11.8	0.0	1.1	1	0	0	1	1	1	0	Conserved	hypothetical	protein	(DUF2461)
TruB_N	PF01509.13	gi|385804140|ref|YP_005840540.1|	-	6.1e-22	78.3	0.1	4.8e-17	62.4	0.1	3.3	1	1	0	1	1	1	1	TruB	family	pseudouridylate	synthase	(N	terminal	domain)
DKCLD	PF08068.7	gi|385804140|ref|YP_005840540.1|	-	1e-07	31.7	0.0	2.4e-07	30.5	0.0	1.6	1	0	0	1	1	1	1	DKCLD	(NUC011)	domain
PUA	PF01472.15	gi|385804140|ref|YP_005840540.1|	-	0.0026	17.4	0.0	0.0065	16.1	0.0	1.7	1	0	0	1	1	1	1	PUA	domain
Cytidylate_kin2	PF13189.1	gi|385804141|ref|YP_005840541.1|	-	2.1e-16	60.3	1.2	1e-14	54.8	0.9	2.0	1	1	0	1	1	1	1	Cytidylate	kinase-like	family
AAA_18	PF13238.1	gi|385804141|ref|YP_005840541.1|	-	4.8e-14	52.7	0.0	7.1e-14	52.2	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|385804141|ref|YP_005840541.1|	-	6.3e-13	49.6	0.5	9.7e-13	49.0	0.3	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|385804141|ref|YP_005840541.1|	-	1.5e-08	34.6	0.5	4.8e-07	29.7	0.3	2.1	1	1	0	1	1	1	1	AAA	domain
ADK	PF00406.17	gi|385804141|ref|YP_005840541.1|	-	1.7e-08	34.4	0.3	1e-07	31.9	0.1	1.8	1	1	1	2	2	2	1	Adenylate	kinase
SKI	PF01202.17	gi|385804141|ref|YP_005840541.1|	-	3e-05	23.9	2.2	0.00026	20.8	1.5	2.0	1	1	0	1	1	1	1	Shikimate	kinase
AAA_28	PF13521.1	gi|385804141|ref|YP_005840541.1|	-	0.00014	21.8	0.4	0.00026	21.0	0.3	1.6	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|385804141|ref|YP_005840541.1|	-	0.0051	16.9	0.0	0.0081	16.3	0.0	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_19	PF13245.1	gi|385804141|ref|YP_005840541.1|	-	0.0062	16.2	0.0	0.012	15.3	0.0	1.5	1	0	0	1	1	1	1	Part	of	AAA	domain
CPT	PF07931.7	gi|385804141|ref|YP_005840541.1|	-	0.0075	15.9	0.1	0.093	12.3	0.1	2.1	1	1	0	1	1	1	1	Chloramphenicol	phosphotransferase-like	protein
AAA_22	PF13401.1	gi|385804141|ref|YP_005840541.1|	-	0.0097	16.0	0.1	0.016	15.3	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.7	gi|385804141|ref|YP_005840541.1|	-	0.011	14.8	0.2	0.034	13.2	0.0	1.9	2	0	0	2	2	2	0	Zeta	toxin
KTI12	PF08433.5	gi|385804141|ref|YP_005840541.1|	-	0.025	13.7	0.0	0.037	13.2	0.0	1.4	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
PRK	PF00485.13	gi|385804141|ref|YP_005840541.1|	-	0.026	14.0	0.0	0.063	12.8	0.0	1.7	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_16	PF13191.1	gi|385804141|ref|YP_005840541.1|	-	0.027	14.4	2.0	0.071	13.0	1.4	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_5	PF07728.9	gi|385804141|ref|YP_005840541.1|	-	0.028	14.1	0.0	0.049	13.3	0.0	1.3	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_29	PF13555.1	gi|385804141|ref|YP_005840541.1|	-	0.031	13.8	0.2	0.06	12.8	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
RNA_helicase	PF00910.17	gi|385804141|ref|YP_005840541.1|	-	0.055	13.6	0.0	0.093	12.9	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
PIG-L	PF02585.12	gi|385804141|ref|YP_005840541.1|	-	0.11	13.0	0.0	0.19	12.2	0.0	1.4	1	0	0	1	1	1	0	GlcNAc-PI	de-N-acetylase
ABC_tran	PF00005.22	gi|385804141|ref|YP_005840541.1|	-	0.14	12.4	0.0	0.2	11.9	0.0	1.5	1	1	0	1	1	1	0	ABC	transporter
AAA_25	PF13481.1	gi|385804141|ref|YP_005840541.1|	-	0.15	11.4	0.8	0.26	10.6	0.5	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_30	PF13604.1	gi|385804141|ref|YP_005840541.1|	-	0.38	10.2	4.2	3.7	7.0	2.9	2.4	1	1	0	1	1	1	0	AAA	domain
DUF106	PF01956.11	gi|385804142|ref|YP_005840542.1|	-	2.2e-45	154.2	0.8	2.9e-45	153.7	0.6	1.1	1	0	0	1	1	1	1	Integral	membrane	protein	DUF106
60KD_IMP	PF02096.15	gi|385804142|ref|YP_005840542.1|	-	7.1e-06	25.8	0.4	1.1e-05	25.2	0.3	1.3	1	0	0	1	1	1	1	60Kd	inner	membrane	protein
YgaB	PF14182.1	gi|385804142|ref|YP_005840542.1|	-	0.076	13.2	2.2	0.12	12.5	1.6	1.3	1	0	0	1	1	1	0	YgaB-like	protein
FA_desaturase	PF00487.19	gi|385804142|ref|YP_005840542.1|	-	0.12	11.7	0.5	0.3	10.5	0.1	1.7	2	0	0	2	2	2	0	Fatty	acid	desaturase
ADK	PF00406.17	gi|532164363|ref|YP_005840543.3|	-	2.1e-41	141.2	0.0	2.6e-41	141.0	0.0	1.1	1	0	0	1	1	1	1	Adenylate	kinase
ADK_lid	PF05191.9	gi|532164363|ref|YP_005840543.3|	-	3e-18	65.1	0.8	5.2e-18	64.4	0.5	1.4	1	0	0	1	1	1	1	Adenylate	kinase,	active	site	lid
AAA_33	PF13671.1	gi|532164363|ref|YP_005840543.3|	-	8.4e-09	35.4	0.0	1.7e-08	34.4	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|532164363|ref|YP_005840543.3|	-	9e-09	36.1	0.0	1.4e-08	35.6	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|532164363|ref|YP_005840543.3|	-	1.2e-07	32.1	0.0	2.3e-07	31.1	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
TF_Zn_Ribbon	PF08271.7	gi|532164363|ref|YP_005840543.3|	-	2.4e-05	23.5	2.7	5.4e-05	22.4	1.9	1.7	1	0	0	1	1	1	1	TFIIB	zinc-binding
Prok-RING_1	PF14446.1	gi|532164363|ref|YP_005840543.3|	-	0.00033	20.3	3.0	0.051	13.3	0.2	2.2	2	0	0	2	2	2	2	Prokaryotic	RING	finger	family	1
DZR	PF12773.2	gi|532164363|ref|YP_005840543.3|	-	0.00038	20.2	0.5	0.00063	19.5	0.3	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
RuvB_N	PF05496.7	gi|532164363|ref|YP_005840543.3|	-	0.00045	19.3	0.0	0.00063	18.8	0.0	1.3	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
SKI	PF01202.17	gi|532164363|ref|YP_005840543.3|	-	0.001	18.9	0.3	0.0043	16.9	0.1	2.1	2	1	0	2	2	2	1	Shikimate	kinase
zf-IS66	PF13005.2	gi|532164363|ref|YP_005840543.3|	-	0.0012	18.7	4.2	0.11	12.5	0.7	2.4	2	0	0	2	2	2	1	zinc-finger	binding	domain	of	transposase	IS66
A2L_zn_ribbon	PF08792.5	gi|532164363|ref|YP_005840543.3|	-	0.0017	17.7	0.4	0.11	11.9	0.0	2.4	2	0	0	2	2	2	1	A2L	zinc	ribbon	domain
AAA_5	PF07728.9	gi|532164363|ref|YP_005840543.3|	-	0.0069	16.1	0.0	0.011	15.4	0.0	1.4	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
PduV-EutP	PF10662.4	gi|532164363|ref|YP_005840543.3|	-	0.0073	15.8	0.0	0.012	15.0	0.0	1.5	1	0	0	1	1	1	1	Ethanolamine	utilisation	-	propanediol	utilisation
MMR_HSR1	PF01926.18	gi|532164363|ref|YP_005840543.3|	-	0.013	15.4	0.0	0.022	14.6	0.0	1.5	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
Zn_ribbon_recom	PF13408.1	gi|532164363|ref|YP_005840543.3|	-	0.017	15.3	0.8	4.1	7.7	0.0	2.7	3	1	0	3	3	2	0	Recombinase	zinc	beta	ribbon	domain
AAA	PF00004.24	gi|532164363|ref|YP_005840543.3|	-	0.023	14.9	0.1	0.047	13.8	0.0	1.7	2	0	0	2	2	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zeta_toxin	PF06414.7	gi|532164363|ref|YP_005840543.3|	-	0.025	13.6	0.0	0.055	12.5	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
zf-C4_Topoisom	PF01396.14	gi|532164363|ref|YP_005840543.3|	-	0.036	13.5	0.4	7.6	6.1	0.0	2.3	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
GFA	PF04828.9	gi|532164363|ref|YP_005840543.3|	-	0.043	13.7	0.5	1.1	9.2	0.0	2.2	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
zf-ribbon_3	PF13248.1	gi|532164363|ref|YP_005840543.3|	-	0.06	12.5	3.2	0.36	10.0	2.4	2.0	1	1	1	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|532164363|ref|YP_005840543.3|	-	0.062	12.9	0.4	0.13	11.9	0.3	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-C2H2_3	PF13878.1	gi|532164363|ref|YP_005840543.3|	-	0.073	12.6	0.2	1.3	8.6	0.0	2.2	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
Mg_chelatase	PF01078.16	gi|532164363|ref|YP_005840543.3|	-	0.076	12.1	0.0	0.12	11.5	0.0	1.2	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
Nudix_N_2	PF14803.1	gi|532164363|ref|YP_005840543.3|	-	0.086	12.5	3.0	7.1	6.4	0.2	2.4	2	0	0	2	2	2	0	Nudix	N-terminal
AAA_22	PF13401.1	gi|532164363|ref|YP_005840543.3|	-	0.097	12.8	0.0	0.19	11.8	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
Ogr_Delta	PF04606.7	gi|532164363|ref|YP_005840543.3|	-	0.14	11.8	0.3	3.2	7.4	0.1	2.2	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
DUF2387	PF09526.5	gi|532164363|ref|YP_005840543.3|	-	0.21	11.5	1.9	0.52	10.2	1.3	1.7	1	1	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
zinc_ribbon_2	PF13240.1	gi|532164363|ref|YP_005840543.3|	-	0.37	10.3	2.8	4.5	6.8	1.9	2.3	1	1	0	1	1	1	0	zinc-ribbon	domain
RRN7	PF11781.3	gi|532164363|ref|YP_005840543.3|	-	0.66	9.5	3.8	2.9	7.4	0.3	2.3	2	0	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
UPF0547	PF10571.4	gi|532164363|ref|YP_005840543.3|	-	0.73	9.5	4.5	4.1	7.1	3.1	2.0	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
DUF35_N	PF12172.3	gi|532164363|ref|YP_005840543.3|	-	1.7	8.6	4.4	22	5.0	3.1	2.2	1	1	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Abhydrolase_6	PF12697.2	gi|385804145|ref|YP_005840545.1|	-	6.1e-37	127.6	4.9	7.8e-37	127.3	3.4	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.15	gi|385804145|ref|YP_005840545.1|	-	3.7e-24	85.5	0.4	5.5e-24	84.9	0.3	1.2	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_5	PF12695.2	gi|385804145|ref|YP_005840545.1|	-	1.5e-18	66.9	0.0	5.9e-18	65.0	0.0	1.8	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
DLH	PF01738.13	gi|385804145|ref|YP_005840545.1|	-	4.4e-06	26.1	0.1	0.0025	17.1	0.0	2.7	2	1	0	2	2	2	2	Dienelactone	hydrolase	family
Hydrolase_4	PF12146.3	gi|385804145|ref|YP_005840545.1|	-	8.6e-05	22.3	0.1	0.00015	21.5	0.0	1.4	1	0	0	1	1	1	1	Putative	lysophospholipase
Peptidase_S9	PF00326.16	gi|385804145|ref|YP_005840545.1|	-	0.0017	17.6	0.8	0.057	12.6	0.1	2.3	2	1	0	2	2	2	1	Prolyl	oligopeptidase	family
Abhydrolase_4	PF08386.5	gi|385804145|ref|YP_005840545.1|	-	0.0049	16.7	0.1	0.0093	15.8	0.1	1.4	1	0	0	1	1	1	1	TAP-like	protein
FSH1	PF03959.8	gi|385804145|ref|YP_005840545.1|	-	0.016	14.6	0.0	0.027	13.9	0.0	1.6	1	0	0	1	1	1	0	Serine	hydrolase	(FSH1)
Ndr	PF03096.9	gi|385804145|ref|YP_005840545.1|	-	0.017	13.5	0.0	0.036	12.5	0.0	1.5	2	0	0	2	2	2	0	Ndr	family
Esterase	PF00756.15	gi|385804145|ref|YP_005840545.1|	-	0.019	14.4	0.2	0.031	13.6	0.1	1.5	1	1	0	1	1	1	0	Putative	esterase
Chlorophyllase	PF07224.6	gi|385804145|ref|YP_005840545.1|	-	0.093	11.5	0.0	0.27	9.9	0.0	1.7	1	1	0	1	1	1	0	Chlorophyllase
HopW1-1	PF15457.1	gi|385804145|ref|YP_005840545.1|	-	0.095	11.7	0.1	0.14	11.1	0.1	1.2	1	0	0	1	1	1	0	Type	III	T3SS	secreted	effector	HopW1-1/HopPmaA
adh_short	PF00106.20	gi|385804147|ref|YP_005840547.1|	-	7.7e-22	77.9	0.3	1.6e-21	76.9	0.2	1.5	1	1	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|385804147|ref|YP_005840547.1|	-	2e-08	34.3	0.0	2.9e-08	33.7	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
Epimerase	PF01370.16	gi|385804147|ref|YP_005840547.1|	-	0.00048	19.6	0.0	0.00056	19.4	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.1	gi|385804147|ref|YP_005840547.1|	-	0.0019	18.2	0.6	0.004	17.1	0.4	1.5	1	1	0	1	1	1	1	NADH(P)-binding
KR	PF08659.5	gi|385804147|ref|YP_005840547.1|	-	0.0066	16.1	0.1	0.075	12.6	0.1	2.0	1	1	0	1	1	1	1	KR	domain
NUDIX	PF00293.23	gi|385804148|ref|YP_005840548.1|	-	1.3e-08	34.5	0.6	1.7e-08	34.1	0.4	1.1	1	0	0	1	1	1	1	NUDIX	domain
NUDIX_4	PF14815.1	gi|385804148|ref|YP_005840548.1|	-	0.0054	16.1	0.4	0.017	14.5	0.3	1.8	1	1	0	1	1	1	1	NUDIX	domain
HTH_AsnC-type	PF13404.1	gi|385804149|ref|YP_005840549.1|	-	1.3e-17	63.0	1.3	2.9e-17	61.9	0.9	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|385804149|ref|YP_005840549.1|	-	1.3e-16	59.7	0.5	2.4e-16	58.8	0.1	1.7	2	0	0	2	2	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.16	gi|385804149|ref|YP_005840549.1|	-	1.5e-10	40.6	0.8	2.6e-10	39.8	0.5	1.4	1	0	0	1	1	1	1	AsnC	family
HTH_20	PF12840.2	gi|385804149|ref|YP_005840549.1|	-	2.8e-06	27.0	0.0	4.8e-06	26.2	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|385804149|ref|YP_005840549.1|	-	1.4e-05	24.5	0.0	2.6e-05	23.7	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Sigma70_r4_2	PF08281.7	gi|385804149|ref|YP_005840549.1|	-	3.2e-05	23.3	0.1	0.00065	19.1	0.0	2.3	2	0	0	2	2	2	1	Sigma-70,	region	4
MarR	PF01047.17	gi|385804149|ref|YP_005840549.1|	-	3.8e-05	23.3	0.6	0.00017	21.2	0.0	2.2	3	0	0	3	3	2	1	MarR	family
MarR_2	PF12802.2	gi|385804149|ref|YP_005840549.1|	-	4.4e-05	23.0	0.5	8e-05	22.2	0.1	1.6	2	0	0	2	2	1	1	MarR	family
HTH_11	PF08279.7	gi|385804149|ref|YP_005840549.1|	-	0.00014	21.4	0.1	0.00032	20.2	0.1	1.6	1	0	0	1	1	1	1	HTH	domain
HTH_23	PF13384.1	gi|385804149|ref|YP_005840549.1|	-	0.00023	20.6	0.1	0.00058	19.4	0.0	1.7	2	0	0	2	2	1	1	Homeodomain-like	domain
HTH_Tnp_ISL3	PF13542.1	gi|385804149|ref|YP_005840549.1|	-	0.00037	19.6	0.4	0.0008	18.5	0.1	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_DeoR	PF08220.7	gi|385804149|ref|YP_005840549.1|	-	0.0007	19.0	0.3	0.0017	17.8	0.2	1.7	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
GntR	PF00392.16	gi|385804149|ref|YP_005840549.1|	-	0.0011	18.3	0.2	0.0025	17.2	0.0	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_29	PF13551.1	gi|385804149|ref|YP_005840549.1|	-	0.0035	17.4	0.0	0.0063	16.6	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_27	PF13463.1	gi|385804149|ref|YP_005840549.1|	-	0.0049	17.1	0.0	0.011	16.0	0.0	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
RPA_C	PF08784.6	gi|385804149|ref|YP_005840549.1|	-	0.0049	17.2	0.0	0.01	16.2	0.0	1.5	1	0	0	1	1	1	1	Replication	protein	A	C	terminal
TrmB	PF01978.14	gi|385804149|ref|YP_005840549.1|	-	0.0051	16.4	0.1	0.11	12.1	0.0	2.1	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
GYD	PF08734.6	gi|385804149|ref|YP_005840549.1|	-	0.006	16.2	0.5	0.034	13.8	0.2	2.2	1	1	0	1	1	1	1	GYD	domain
Sigma70_r4	PF04545.11	gi|385804149|ref|YP_005840549.1|	-	0.0079	15.4	1.0	0.016	14.4	0.0	2.0	2	0	0	2	2	2	1	Sigma-70,	region	4
PaaX	PF07848.7	gi|385804149|ref|YP_005840549.1|	-	0.009	15.9	0.1	0.015	15.3	0.0	1.4	1	0	0	1	1	1	1	PaaX-like	protein
HTH_28	PF13518.1	gi|385804149|ref|YP_005840549.1|	-	0.0092	15.9	0.0	0.018	15.0	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HrcA_DNA-bdg	PF03444.10	gi|385804149|ref|YP_005840549.1|	-	0.012	15.0	0.1	0.045	13.2	0.0	1.9	1	1	1	2	2	2	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Rrf2	PF02082.15	gi|385804149|ref|YP_005840549.1|	-	0.013	15.6	0.0	0.24	11.5	0.0	2.1	1	1	1	2	2	2	0	Transcriptional	regulator
HTH_Mga	PF08280.6	gi|385804149|ref|YP_005840549.1|	-	0.026	14.2	0.0	0.043	13.5	0.0	1.4	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
DUF4191	PF13829.1	gi|385804149|ref|YP_005840549.1|	-	0.028	13.5	0.6	0.084	11.9	0.2	1.8	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4191)
DUF746	PF05344.6	gi|385804149|ref|YP_005840549.1|	-	0.035	13.6	0.1	0.15	11.5	0.0	2.0	2	0	0	2	2	2	0	Domain	of	Unknown	Function	(DUF746)
HTH_Crp_2	PF13545.1	gi|385804149|ref|YP_005840549.1|	-	0.046	13.5	0.1	0.14	11.9	0.1	1.9	1	1	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_5	PF01022.15	gi|385804149|ref|YP_005840549.1|	-	0.046	13.3	0.0	0.087	12.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Stk19	PF10494.4	gi|385804149|ref|YP_005840549.1|	-	0.056	12.8	0.3	0.06	12.7	0.2	1.2	1	1	0	1	1	1	0	Serine-threonine	protein	kinase	19
GerE	PF00196.14	gi|385804149|ref|YP_005840549.1|	-	0.059	12.6	0.2	0.23	10.7	0.0	2.1	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
HTH_38	PF13936.1	gi|385804149|ref|YP_005840549.1|	-	0.12	12.0	0.3	0.29	10.7	0.1	1.8	2	0	0	2	2	1	0	Helix-turn-helix	domain
CPSase_sm_chain	PF00988.17	gi|385804150|ref|YP_005840550.1|	-	2.6e-38	130.4	0.0	2.3e-37	127.4	0.0	2.2	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthase	small	chain,	CPSase	domain
GATase	PF00117.23	gi|385804150|ref|YP_005840550.1|	-	3.1e-35	121.3	0.0	1.8e-34	118.8	0.0	1.9	2	0	0	2	2	2	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|385804150|ref|YP_005840550.1|	-	3.6e-08	33.1	0.1	1.3e-05	24.7	0.0	2.3	1	1	0	1	1	1	1	Peptidase	C26
DJ-1_PfpI	PF01965.19	gi|385804150|ref|YP_005840550.1|	-	0.047	13.1	0.0	0.092	12.1	0.0	1.5	1	0	0	1	1	1	0	DJ-1/PfpI	family
Acetyltransf_1	PF00583.19	gi|385804151|ref|YP_005840551.1|	-	8.5e-10	38.5	0.0	1.7e-09	37.5	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_3	PF13302.1	gi|385804151|ref|YP_005840551.1|	-	7.1e-06	26.2	0.0	1.6e-05	25.0	0.0	1.7	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|385804151|ref|YP_005840551.1|	-	0.00017	21.3	0.0	0.00036	20.2	0.0	1.6	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_10	PF13673.1	gi|385804151|ref|YP_005840551.1|	-	0.00059	19.9	0.2	0.0026	17.8	0.1	2.2	2	1	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
KR	PF08659.5	gi|385804151|ref|YP_005840551.1|	-	0.001	18.7	0.4	1.6	8.3	0.0	2.6	3	0	0	3	3	3	2	KR	domain
Acetyltransf_7	PF13508.1	gi|385804151|ref|YP_005840551.1|	-	0.0013	18.8	0.0	0.0026	17.8	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
adh_short	PF00106.20	gi|385804151|ref|YP_005840551.1|	-	0.016	15.1	1.1	1.5	8.7	0.1	2.3	2	0	0	2	2	2	0	short	chain	dehydrogenase
Acetyltransf_CG	PF14542.1	gi|385804151|ref|YP_005840551.1|	-	0.031	14.1	0.0	0.074	12.9	0.0	1.6	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Acetyltransf_9	PF13527.1	gi|385804151|ref|YP_005840551.1|	-	0.037	13.8	0.0	0.1	12.4	0.0	1.8	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Asparaginase	PF00710.15	gi|385804152|ref|YP_005840552.1|	-	1.4e-85	286.9	2.3	1.7e-85	286.6	1.6	1.1	1	0	0	1	1	1	1	Asparaginase
CK2S	PF15011.1	gi|385804153|ref|YP_005840553.1|	-	0.071	12.9	0.0	2.5	7.8	0.0	2.1	2	0	0	2	2	2	0	Casein	Kinase	2	substrate
FmdA_AmdA	PF03069.10	gi|385804156|ref|YP_005840556.1|	-	1.3e-144	481.5	0.0	2.9e-144	480.3	0.0	1.5	1	1	0	1	1	1	1	Acetamidase/Formamidase	family
Cpn60_TCP1	PF00118.19	gi|385804157|ref|YP_005840557.1|	-	4.1e-132	441.2	2.2	4.7e-132	441.0	1.5	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Peripla_BP_5	PF13433.1	gi|385804158|ref|YP_005840558.1|	-	1.8e-89	300.0	1.0	2.9e-89	299.3	0.7	1.3	1	1	0	1	1	1	1	Periplasmic	binding	protein	domain
Peripla_BP_6	PF13458.1	gi|385804158|ref|YP_005840558.1|	-	3.2e-83	279.9	6.5	4.1e-83	279.5	4.5	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.23	gi|385804158|ref|YP_005840558.1|	-	6.8e-12	44.8	0.7	1.8e-11	43.4	0.5	1.5	1	1	0	1	1	1	1	Receptor	family	ligand	binding	region
TAT_signal	PF10518.4	gi|385804158|ref|YP_005840558.1|	-	0.058	13.4	0.3	0.16	12.0	0.2	1.8	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_2	PF02653.11	gi|385804159|ref|YP_005840559.1|	-	1.4e-38	132.4	45.9	1.7e-38	132.1	31.8	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.11	gi|385804160|ref|YP_005840560.1|	-	2.7e-31	108.5	37.5	3.9e-31	108.0	26.0	1.2	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
ABC_tran	PF00005.22	gi|385804161|ref|YP_005840561.1|	-	6.4e-28	97.7	0.1	1e-27	97.0	0.1	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385804161|ref|YP_005840561.1|	-	1.4e-08	35.0	1.3	0.00012	22.1	0.0	2.3	1	1	1	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|385804161|ref|YP_005840561.1|	-	0.00042	19.6	3.4	0.0016	17.7	2.4	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
BCA_ABC_TP_C	PF12399.3	gi|385804161|ref|YP_005840561.1|	-	0.001	18.7	0.1	0.0018	17.8	0.0	1.5	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
DUF258	PF03193.11	gi|385804161|ref|YP_005840561.1|	-	0.0034	16.5	0.1	0.0057	15.8	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_29	PF13555.1	gi|385804161|ref|YP_005840561.1|	-	0.0049	16.3	0.0	0.0096	15.4	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Mg_chelatase	PF01078.16	gi|385804161|ref|YP_005840561.1|	-	0.067	12.3	0.0	0.11	11.6	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_23	PF13476.1	gi|385804161|ref|YP_005840561.1|	-	0.16	12.3	4.2	0.27	11.5	2.5	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_13	PF13166.1	gi|385804161|ref|YP_005840561.1|	-	0.31	9.4	4.7	0.26	9.7	0.6	2.1	1	1	1	2	2	2	0	AAA	domain
ABC_tran	PF00005.22	gi|385804162|ref|YP_005840562.1|	-	2.7e-28	98.9	0.0	4.2e-28	98.3	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385804162|ref|YP_005840562.1|	-	1.8e-06	28.1	0.7	0.03	14.2	0.1	2.2	1	1	0	2	2	2	2	AAA	domain
AAA_22	PF13401.1	gi|385804162|ref|YP_005840562.1|	-	0.0024	17.9	0.7	0.015	15.4	0.5	2.0	1	1	0	1	1	1	1	AAA	domain
NACHT	PF05729.7	gi|385804162|ref|YP_005840562.1|	-	0.0037	16.9	0.5	0.0067	16.1	0.1	1.5	2	0	0	2	2	1	1	NACHT	domain
Miro	PF08477.8	gi|385804162|ref|YP_005840562.1|	-	0.0057	17.1	0.1	0.014	15.8	0.0	1.7	2	0	0	2	2	2	1	Miro-like	protein
MMR_HSR1	PF01926.18	gi|385804162|ref|YP_005840562.1|	-	0.006	16.5	0.0	0.0096	15.8	0.0	1.4	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_23	PF13476.1	gi|385804162|ref|YP_005840562.1|	-	0.0086	16.4	1.0	0.031	14.5	0.1	1.9	2	0	0	2	2	2	1	AAA	domain
DUF258	PF03193.11	gi|385804162|ref|YP_005840562.1|	-	0.009	15.2	0.3	0.016	14.4	0.2	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
NB-ARC	PF00931.17	gi|385804162|ref|YP_005840562.1|	-	0.0096	14.8	0.3	0.022	13.6	0.1	1.6	2	0	0	2	2	2	1	NB-ARC	domain
Arch_ATPase	PF01637.13	gi|385804162|ref|YP_005840562.1|	-	0.02	14.6	0.0	0.032	13.9	0.0	1.3	1	0	0	1	1	1	0	Archaeal	ATPase
ABC_ATPase	PF09818.4	gi|385804162|ref|YP_005840562.1|	-	0.02	13.4	1.4	7.2	5.0	0.0	2.9	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
SMC_N	PF02463.14	gi|385804162|ref|YP_005840562.1|	-	0.028	13.6	0.3	0.092	11.9	0.2	1.7	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|385804162|ref|YP_005840562.1|	-	0.033	13.7	0.1	0.066	12.7	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
MobB	PF03205.9	gi|385804162|ref|YP_005840562.1|	-	0.047	13.4	0.1	0.096	12.3	0.1	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_16	PF13191.1	gi|385804162|ref|YP_005840562.1|	-	0.067	13.1	0.9	0.18	11.7	0.6	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_14	PF13173.1	gi|385804162|ref|YP_005840562.1|	-	0.069	13.0	0.0	0.56	10.1	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_15	PF13175.1	gi|385804162|ref|YP_005840562.1|	-	0.072	12.1	0.1	1.5	7.8	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_10	PF12846.2	gi|385804162|ref|YP_005840562.1|	-	0.077	12.4	0.1	0.26	10.6	0.1	1.7	2	0	0	2	2	2	0	AAA-like	domain
AAA_25	PF13481.1	gi|385804162|ref|YP_005840562.1|	-	0.079	12.3	0.0	0.28	10.5	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
UPF0079	PF02367.12	gi|385804162|ref|YP_005840562.1|	-	0.088	12.4	0.0	0.2	11.3	0.0	1.6	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_24	PF13479.1	gi|385804162|ref|YP_005840562.1|	-	0.098	12.2	0.1	0.26	10.8	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
Usp	PF00582.21	gi|385804163|ref|YP_005840563.1|	-	4.5e-16	59.3	0.0	5.4e-16	59.0	0.0	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
CRCB	PF02537.10	gi|385804164|ref|YP_005840564.1|	-	8.9e-21	73.9	10.5	1e-20	73.7	7.3	1.1	1	0	0	1	1	1	1	CrcB-like	protein
EamA	PF00892.15	gi|385804164|ref|YP_005840564.1|	-	0.052	13.5	7.0	0.081	12.9	4.8	1.4	1	0	0	1	1	1	0	EamA-like	transporter	family
DUF606	PF04657.8	gi|385804164|ref|YP_005840564.1|	-	0.17	11.9	5.5	0.32	11.0	3.8	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function,	DUF606
UPF0197	PF05251.7	gi|385804164|ref|YP_005840564.1|	-	2.7	8.3	6.7	0.96	9.7	0.7	2.5	1	1	2	3	3	3	0	Uncharacterised	protein	family	(UPF0197)
CRCB	PF02537.10	gi|385804165|ref|YP_005840565.1|	-	3.3e-25	88.2	15.1	3.9e-25	88.0	10.5	1.1	1	0	0	1	1	1	1	CrcB-like	protein
MFS_3	PF05977.8	gi|385804165|ref|YP_005840565.1|	-	0.096	10.7	3.7	0.11	10.5	2.6	1.0	1	0	0	1	1	1	0	Transmembrane	secretion	effector
HTH_5	PF01022.15	gi|385804167|ref|YP_005840567.1|	-	6.5e-15	54.5	0.1	1.6e-14	53.3	0.1	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|385804167|ref|YP_005840567.1|	-	1.7e-13	50.1	1.2	4.6e-13	48.7	0.1	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|385804167|ref|YP_005840567.1|	-	3.6e-10	39.3	0.0	3.8e-06	26.5	0.0	2.5	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|385804167|ref|YP_005840567.1|	-	7.2e-09	35.1	0.2	8.2e-07	28.6	0.1	2.8	2	0	0	2	2	2	1	MarR	family
MarR	PF01047.17	gi|385804167|ref|YP_005840567.1|	-	4.5e-08	32.6	0.1	2e-05	24.2	0.0	2.6	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.1	gi|385804167|ref|YP_005840567.1|	-	1.7e-07	30.5	0.3	4.6e-07	29.1	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.1	gi|385804167|ref|YP_005840567.1|	-	2.1e-06	27.9	0.2	6.4e-05	23.1	0.0	2.5	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.14	gi|385804167|ref|YP_005840567.1|	-	3.9e-05	23.4	0.0	0.00069	19.4	0.0	2.4	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_11	PF08279.7	gi|385804167|ref|YP_005840567.1|	-	8.7e-05	22.0	0.0	0.00025	20.5	0.0	1.8	1	0	0	1	1	1	1	HTH	domain
Rrf2	PF02082.15	gi|385804167|ref|YP_005840567.1|	-	0.00014	21.9	0.0	0.0082	16.2	0.0	2.4	2	0	0	2	2	2	1	Transcriptional	regulator
DUF4423	PF14394.1	gi|385804167|ref|YP_005840567.1|	-	0.00047	19.7	0.1	0.38	10.2	0.0	2.8	3	1	1	4	4	4	2	Domain	of	unknown	function	(DUF4423)
PadR	PF03551.9	gi|385804167|ref|YP_005840567.1|	-	0.00057	19.5	0.5	0.007	16.1	0.1	2.8	2	1	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.1	gi|385804167|ref|YP_005840567.1|	-	0.00089	19.0	0.0	1	9.2	0.0	2.6	3	0	0	3	3	2	2	Winged	helix-turn-helix
HTH_Crp_2	PF13545.1	gi|385804167|ref|YP_005840567.1|	-	0.0023	17.6	0.0	0.02	14.6	0.0	2.4	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
DDRGK	PF09756.4	gi|385804167|ref|YP_005840567.1|	-	0.0078	15.6	1.3	0.17	11.2	0.0	2.3	2	0	0	2	2	2	1	DDRGK	domain
DUF2513	PF10711.4	gi|385804167|ref|YP_005840567.1|	-	0.014	15.5	0.0	0.044	13.8	0.0	1.8	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
HTH_CodY	PF08222.6	gi|385804167|ref|YP_005840567.1|	-	0.018	14.3	0.0	0.21	10.9	0.0	2.2	2	0	0	2	2	2	0	CodY	helix-turn-helix	domain
HTH_10	PF04967.7	gi|385804167|ref|YP_005840567.1|	-	0.022	14.3	0.0	0.055	13.0	0.0	1.7	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_23	PF13384.1	gi|385804167|ref|YP_005840567.1|	-	0.022	14.3	0.0	0.07	12.8	0.0	1.8	1	0	0	1	1	1	0	Homeodomain-like	domain
Cucumo_2B	PF03263.8	gi|385804167|ref|YP_005840567.1|	-	0.023	14.9	3.9	0.93	9.8	0.1	2.7	2	1	1	3	3	3	0	Cucumovirus	protein	2B
Cas_Cas1	PF01867.11	gi|385804167|ref|YP_005840567.1|	-	0.04	12.9	0.3	0.069	12.2	0.2	1.4	1	0	0	1	1	1	0	CRISPR	associated	protein	Cas1
ArsR	PF09824.4	gi|385804167|ref|YP_005840567.1|	-	0.043	13.1	0.0	0.17	11.2	0.0	1.8	2	0	0	2	2	2	0	ArsR	transcriptional	regulator
DUF3456	PF11938.3	gi|385804167|ref|YP_005840567.1|	-	0.064	13.2	0.9	0.13	12.2	0.6	1.5	1	0	0	1	1	1	0	TLR4	regulator	and	MIR-interacting	MSAP
HTH_IclR	PF09339.5	gi|385804167|ref|YP_005840567.1|	-	0.11	12.1	0.3	1.9	8.1	0.0	3.1	4	0	0	4	4	4	0	IclR	helix-turn-helix	domain
DUF1405	PF07187.6	gi|385804168|ref|YP_005840568.1|	-	8.5e-41	139.4	11.3	1.1e-40	139.0	7.8	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1405)
Metalloenzyme	PF01676.13	gi|385804169|ref|YP_005840569.1|	-	4e-80	268.8	1.9	4.5e-80	268.6	1.3	1.0	1	0	0	1	1	1	1	Metalloenzyme	superfamily
iPGM_N	PF06415.8	gi|385804169|ref|YP_005840569.1|	-	4e-75	251.9	0.1	5.7e-75	251.4	0.1	1.2	1	0	0	1	1	1	1	BPG-independent	PGAM	N-terminus	(iPGM_N)
Phosphodiest	PF01663.17	gi|385804169|ref|YP_005840569.1|	-	1.3e-07	31.3	0.1	3.4e-07	29.9	0.1	1.8	2	0	0	2	2	2	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
PglZ	PF08665.7	gi|385804169|ref|YP_005840569.1|	-	0.00018	21.2	0.1	0.00046	19.9	0.0	1.7	1	0	0	1	1	1	1	PglZ	domain
SNARE_assoc	PF09335.6	gi|385804170|ref|YP_005840570.1|	-	1.9e-10	40.9	4.9	1.9e-10	40.9	3.4	2.3	2	1	0	2	2	2	1	SNARE	associated	Golgi	protein
Peptidase_C3	PF00548.15	gi|385804172|ref|YP_005840572.1|	-	0.013	15.3	0.1	0.014	15.2	0.1	1.0	1	0	0	1	1	1	0	3C	cysteine	protease	(picornain	3C)
CCDC92	PF14916.1	gi|385804172|ref|YP_005840572.1|	-	0.044	13.3	7.1	0.035	13.7	3.5	1.9	1	1	0	1	1	1	0	Coiled-coil	domain	of	unknown	function
Atg14	PF10186.4	gi|385804172|ref|YP_005840572.1|	-	0.1	11.4	3.6	0.11	11.4	2.5	1.1	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
ClpB_D2-small	PF10431.4	gi|385804172|ref|YP_005840572.1|	-	0.15	11.9	2.3	0.21	11.5	1.6	1.2	1	0	0	1	1	1	0	C-terminal,	D2-small	domain,	of	ClpB	protein
DUF4407	PF14362.1	gi|385804172|ref|YP_005840572.1|	-	0.37	9.7	3.7	0.45	9.4	2.6	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
CorA	PF01544.13	gi|385804172|ref|YP_005840572.1|	-	0.37	9.7	3.5	0.41	9.6	2.4	1.1	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
ABC_transp_aux	PF09822.4	gi|385804174|ref|YP_005840574.1|	-	5.7e-07	29.2	0.0	7.2e-07	28.9	0.0	1.3	1	0	0	1	1	1	1	ABC-type	uncharacterized	transport	system
DUF4350	PF14258.1	gi|385804174|ref|YP_005840574.1|	-	1.3e-05	25.2	0.3	5.7e-05	23.2	0.0	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4350)
Peptidase_S49	PF01343.13	gi|385804175|ref|YP_005840575.1|	-	1.5e-18	67.0	1.4	3.2e-17	62.7	0.9	2.3	1	1	0	1	1	1	1	Peptidase	family	S49
CLP_protease	PF00574.18	gi|385804175|ref|YP_005840575.1|	-	0.00097	18.8	0.1	0.004	16.8	0.0	1.9	2	0	0	2	2	2	1	Clp	protease
SDH_sah	PF01972.11	gi|385804175|ref|YP_005840575.1|	-	0.014	14.2	0.0	0.019	13.7	0.0	1.1	1	0	0	1	1	1	0	Serine	dehydrogenase	proteinase
OKR_DC_1_N	PF03709.10	gi|385804175|ref|YP_005840575.1|	-	0.015	15.3	0.0	0.029	14.4	0.0	1.4	1	0	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
Peptidase_S49_N	PF08496.5	gi|385804175|ref|YP_005840575.1|	-	0.34	10.7	0.1	0.34	10.7	0.1	1.7	2	0	0	2	2	2	0	Peptidase	family	S49	N-terminal
HAD_2	PF13419.1	gi|385804176|ref|YP_005840576.1|	-	1.3e-11	45.0	0.0	1.4e-07	31.8	0.0	2.1	1	1	1	2	2	2	2	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|385804176|ref|YP_005840576.1|	-	7e-06	26.6	0.1	0.003	17.9	0.0	2.2	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|385804176|ref|YP_005840576.1|	-	0.0036	16.9	0.0	0.0075	15.9	0.0	1.4	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD	PF12710.2	gi|385804176|ref|YP_005840576.1|	-	0.034	14.3	0.1	0.37	10.9	0.1	2.0	1	1	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
zf-ribbon_3	PF13248.1	gi|385804177|ref|YP_005840577.1|	-	0.012	14.8	2.0	0.012	14.7	0.0	2.0	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-Mss51	PF13824.1	gi|385804177|ref|YP_005840577.1|	-	0.014	15.1	0.1	0.67	9.8	0.1	2.3	2	0	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zinc_ribbon_2	PF13240.1	gi|385804177|ref|YP_005840577.1|	-	0.026	14.0	1.6	0.056	12.9	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Acetone_carb_G	PF08882.6	gi|385804177|ref|YP_005840577.1|	-	0.055	13.4	0.6	0.11	12.4	0.4	1.4	1	0	0	1	1	1	0	Acetone	carboxylase	gamma	subunit
DUF2296	PF10058.4	gi|385804177|ref|YP_005840577.1|	-	0.059	13.1	0.5	0.15	11.7	0.2	1.8	2	0	0	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
TF_Zn_Ribbon	PF08271.7	gi|385804177|ref|YP_005840577.1|	-	0.17	11.2	1.2	0.34	10.2	0.2	1.9	2	0	0	2	2	2	0	TFIIB	zinc-binding
Desulfoferrod_N	PF06397.7	gi|385804177|ref|YP_005840577.1|	-	0.25	10.7	4.4	0.095	12.1	0.9	1.8	2	0	0	2	2	2	0	Desulfoferrodoxin,	N-terminal	domain
THF_DHG_CYH_C	PF02882.14	gi|385804178|ref|YP_005840578.1|	-	2.3e-66	221.8	3.2	2.3e-66	221.8	2.3	1.4	2	0	0	2	2	2	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
THF_DHG_CYH	PF00763.18	gi|385804178|ref|YP_005840578.1|	-	1e-38	131.9	0.1	1.6e-38	131.3	0.1	1.3	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	catalytic	domain
SHMT	PF00464.14	gi|385804179|ref|YP_005840579.1|	-	4.4e-150	499.5	0.1	5.3e-150	499.2	0.1	1.0	1	0	0	1	1	1	1	Serine	hydroxymethyltransferase
Aminotran_1_2	PF00155.16	gi|385804179|ref|YP_005840579.1|	-	6.2e-11	41.8	0.0	1.1e-10	41.0	0.0	1.4	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.16	gi|385804179|ref|YP_005840579.1|	-	2.2e-06	27.0	0.0	6e-06	25.6	0.0	1.7	1	1	0	1	1	1	1	Beta-eliminating	lyase
DegT_DnrJ_EryC1	PF01041.12	gi|385804179|ref|YP_005840579.1|	-	0.00059	18.9	1.0	0.001	18.2	0.5	1.4	1	1	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
YcaO	PF02624.11	gi|385804181|ref|YP_005840581.1|	-	1e-64	219.1	0.5	1.4e-64	218.6	0.3	1.2	1	0	0	1	1	1	1	YcaO-like	family
DUF4318	PF14201.1	gi|385804181|ref|YP_005840581.1|	-	0.12	12.1	0.0	28	4.6	0.0	3.2	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF4318)
DUF63	PF01889.12	gi|385804182|ref|YP_005840582.1|	-	3.7e-38	132.1	11.8	5.8e-37	128.2	8.2	2.4	2	1	0	2	2	2	1	Membrane	protein	of	unknown	function	DUF63
DUF4345	PF14248.1	gi|385804182|ref|YP_005840582.1|	-	0.019	14.4	17.0	0.02	14.3	0.2	3.2	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4345)
Inositol_P	PF00459.20	gi|385804183|ref|YP_005840583.1|	-	9.3e-57	192.3	4.5	1e-56	192.2	3.1	1.0	1	0	0	1	1	1	1	Inositol	monophosphatase	family
FBPase	PF00316.15	gi|385804183|ref|YP_005840583.1|	-	0.014	14.2	0.1	0.02	13.7	0.1	1.2	1	0	0	1	1	1	0	Fructose-1-6-bisphosphatase
Usp	PF00582.21	gi|385804184|ref|YP_005840584.1|	-	4.3e-29	101.4	0.2	4.8e-29	101.3	0.1	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
IPT	PF01745.11	gi|385804184|ref|YP_005840584.1|	-	0.08	12.0	0.0	0.099	11.7	0.0	1.1	1	0	0	1	1	1	0	Isopentenyl	transferase
DUF77	PF01910.12	gi|385804185|ref|YP_005840585.1|	-	3.2e-22	77.9	0.6	4e-22	77.7	0.4	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF77
MCH	PF02289.11	gi|385804186|ref|YP_005840586.1|	-	5.8e-94	314.6	0.2	6.5e-94	314.4	0.1	1.0	1	0	0	1	1	1	1	Cyclohydrolase	(MCH)
Peptidase_M48	PF01435.13	gi|385804187|ref|YP_005840587.1|	-	1.9e-40	138.7	0.0	2.6e-40	138.3	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.6	gi|385804187|ref|YP_005840587.1|	-	0.0027	16.7	0.8	0.005	15.8	0.0	1.8	2	0	0	2	2	2	1	BlaR1	peptidase	M56
DUF2268	PF10026.4	gi|385804187|ref|YP_005840587.1|	-	0.014	14.7	0.0	0.026	13.8	0.0	1.3	1	0	0	1	1	1	0	Predicted	Zn-dependent	protease	(DUF2268)
DUF45	PF01863.12	gi|385804187|ref|YP_005840587.1|	-	0.15	11.8	0.0	0.3	10.8	0.0	1.4	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF45
GTP_EFTU	PF00009.22	gi|385804188|ref|YP_005840588.1|	-	5.2e-35	120.5	0.1	7.6e-35	120.0	0.0	1.2	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.12	gi|385804188|ref|YP_005840588.1|	-	1.1e-16	60.7	0.0	2.5e-16	59.6	0.0	1.6	1	0	0	1	1	1	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.20	gi|385804188|ref|YP_005840588.1|	-	1.5e-10	41.0	0.4	1.5e-10	41.0	0.3	2.3	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.18	gi|385804188|ref|YP_005840588.1|	-	0.0049	16.8	0.0	0.01	15.8	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
ATP_bind_1	PF03029.12	gi|385804188|ref|YP_005840588.1|	-	0.0065	16.0	0.8	0.06	12.8	0.0	2.2	2	0	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
DnaJ	PF00226.26	gi|385804189|ref|YP_005840589.1|	-	1.3e-16	60.1	0.1	1.8e-16	59.6	0.1	1.2	1	0	0	1	1	1	1	DnaJ	domain
RPT	PF13446.1	gi|385804189|ref|YP_005840589.1|	-	4.7e-05	22.7	0.1	0.00018	20.8	0.0	1.9	1	1	1	2	2	2	1	A	repeated	domain	in	UCH-protein
IncA	PF04156.9	gi|385804189|ref|YP_005840589.1|	-	0.13	11.7	0.3	0.2	11.2	0.2	1.3	1	0	0	1	1	1	0	IncA	protein
Zn_Tnp_IS1595	PF12760.2	gi|385804191|ref|YP_005840591.1|	-	0.00022	20.9	0.6	0.00027	20.6	0.4	1.1	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
zf-H2C2_2	PF13465.1	gi|385804191|ref|YP_005840591.1|	-	0.0004	20.5	1.1	0.52	10.7	0.0	2.1	1	1	1	2	2	2	2	Zinc-finger	double	domain
RNA_POL_M_15KD	PF02150.11	gi|385804191|ref|YP_005840591.1|	-	0.00081	19.0	0.1	0.0027	17.3	0.1	1.8	1	1	0	1	1	1	1	RNA	polymerases	M/15	Kd	subunit
Rubredoxin	PF00301.15	gi|385804191|ref|YP_005840591.1|	-	0.00088	19.0	0.3	0.89	9.4	0.0	2.2	2	0	0	2	2	2	2	Rubredoxin
Zn-ribbon_8	PF09723.5	gi|385804191|ref|YP_005840591.1|	-	0.0013	18.5	0.2	0.52	10.3	0.0	2.1	2	0	0	2	2	2	2	Zinc	ribbon	domain
zf-C2H2	PF00096.21	gi|385804191|ref|YP_005840591.1|	-	0.0049	17.1	0.5	0.69	10.3	0.1	2.2	2	0	0	2	2	2	1	Zinc	finger,	C2H2	type
Lar_restr_allev	PF14354.1	gi|385804191|ref|YP_005840591.1|	-	0.029	14.6	0.3	0.037	14.3	0.2	1.2	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
DnaJ_CXXCXGXG	PF00684.14	gi|385804191|ref|YP_005840591.1|	-	0.06	13.4	0.1	0.073	13.1	0.1	1.1	1	0	0	1	1	1	0	DnaJ	central	domain
DUF2082	PF09855.4	gi|385804191|ref|YP_005840591.1|	-	0.064	13.1	0.1	3.3	7.6	0.0	2.1	2	0	0	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
zf-IS66	PF13005.2	gi|385804191|ref|YP_005840591.1|	-	0.065	13.2	0.7	2.4	8.2	0.1	2.1	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Prok-RING_1	PF14446.1	gi|385804191|ref|YP_005840591.1|	-	0.079	12.7	1.3	3	7.6	0.1	2.1	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
zf-RING_3	PF14369.1	gi|385804191|ref|YP_005840591.1|	-	0.082	12.9	0.4	10	6.2	0.1	2.2	2	0	0	2	2	2	0	zinc-finger
OrfB_Zn_ribbon	PF07282.6	gi|385804191|ref|YP_005840591.1|	-	0.13	11.8	0.3	11	5.7	0.1	2.1	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
HypA	PF01155.14	gi|385804191|ref|YP_005840591.1|	-	0.16	11.6	0.2	4.7	6.9	0.0	1.9	1	1	1	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
zf-trcl	PF13451.1	gi|385804191|ref|YP_005840591.1|	-	0.17	11.5	1.0	12	5.6	0.0	2.1	2	0	0	2	2	2	0	Probable	zinc-binding	domain
zf-Mss51	PF13824.1	gi|385804191|ref|YP_005840591.1|	-	0.22	11.4	4.1	0.26	11.1	0.5	2.0	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
A2L_zn_ribbon	PF08792.5	gi|385804191|ref|YP_005840591.1|	-	0.36	10.3	3.6	6.8	6.2	0.1	2.4	2	1	0	2	2	2	0	A2L	zinc	ribbon	domain
PhnA_Zn_Ribbon	PF08274.7	gi|385804191|ref|YP_005840591.1|	-	0.36	10.6	2.2	4.7	7.0	0.1	2.1	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
ADK_lid	PF05191.9	gi|385804191|ref|YP_005840591.1|	-	0.39	10.4	2.0	2.2	8.0	1.4	1.9	1	1	0	1	1	1	0	Adenylate	kinase,	active	site	lid
UPF0547	PF10571.4	gi|385804191|ref|YP_005840591.1|	-	0.82	9.4	6.9	3.5	7.3	0.5	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DUF4379	PF14311.1	gi|385804191|ref|YP_005840591.1|	-	1.1	9.1	5.3	0.64	9.8	0.2	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4379)
DUF3797	PF12677.2	gi|385804191|ref|YP_005840591.1|	-	1.3	8.6	3.5	15	5.2	0.2	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
zf-TFIIB	PF13453.1	gi|385804191|ref|YP_005840591.1|	-	7.4	5.8	6.7	1.5	8.0	0.7	2.4	2	1	1	3	3	3	0	Transcription	factor	zinc-finger
ABC_tran	PF00005.22	gi|385804192|ref|YP_005840592.1|	-	9.2e-31	106.9	0.0	1.2e-30	106.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385804192|ref|YP_005840592.1|	-	2e-12	47.6	0.0	2.7e-06	27.5	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|385804192|ref|YP_005840592.1|	-	7.2e-06	25.4	0.0	1.4e-05	24.5	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.14	gi|385804192|ref|YP_005840592.1|	-	4e-05	22.9	0.2	0.0022	17.2	0.2	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.1	gi|385804192|ref|YP_005840592.1|	-	0.00024	21.2	0.2	0.16	12.1	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_23	PF13476.1	gi|385804192|ref|YP_005840592.1|	-	0.0003	21.1	0.1	0.0005	20.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.1	gi|385804192|ref|YP_005840592.1|	-	0.0045	16.5	0.1	0.018	14.6	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.1	gi|385804192|ref|YP_005840592.1|	-	0.0082	15.5	0.0	0.037	13.4	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|385804192|ref|YP_005840592.1|	-	0.014	14.8	0.1	0.4	10.0	0.0	2.1	2	0	0	2	2	2	0	AAA-like	domain
MutS_V	PF00488.16	gi|385804192|ref|YP_005840592.1|	-	0.027	13.9	0.0	0.042	13.2	0.0	1.2	1	0	0	1	1	1	0	MutS	domain	V
AAA_17	PF13207.1	gi|385804192|ref|YP_005840592.1|	-	0.051	14.3	0.0	0.099	13.4	0.0	1.7	2	0	0	2	2	1	0	AAA	domain
DUF258	PF03193.11	gi|385804192|ref|YP_005840592.1|	-	0.067	12.3	0.0	0.11	11.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_15	PF13175.1	gi|385804192|ref|YP_005840592.1|	-	0.073	12.0	0.0	1.2	8.1	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_14	PF13173.1	gi|385804192|ref|YP_005840592.1|	-	0.076	12.9	0.0	0.14	12.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.7	gi|385804192|ref|YP_005840592.1|	-	0.088	11.8	0.0	0.14	11.1	0.0	1.2	1	0	0	1	1	1	0	Zeta	toxin
AAA_16	PF13191.1	gi|385804192|ref|YP_005840592.1|	-	0.09	12.7	0.0	0.51	10.2	0.0	2.0	1	1	0	1	1	1	0	AAA	ATPase	domain
ABC_ATPase	PF09818.4	gi|385804192|ref|YP_005840592.1|	-	0.099	11.2	0.6	6.3	5.2	0.0	2.1	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
SbcCD_C	PF13558.1	gi|385804192|ref|YP_005840592.1|	-	0.12	12.2	1.0	0.74	9.7	0.7	2.0	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
Dynamin_N	PF00350.18	gi|385804192|ref|YP_005840592.1|	-	0.14	11.9	0.0	0.34	10.6	0.0	1.6	1	1	0	1	1	1	0	Dynamin	family
T2SE	PF00437.15	gi|385804192|ref|YP_005840592.1|	-	0.14	11.0	0.1	1.1	8.1	0.0	2.1	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
ABC_tran	PF00005.22	gi|385804193|ref|YP_005840593.1|	-	1.3e-25	90.2	0.2	9.8e-13	48.5	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.1	gi|385804193|ref|YP_005840593.1|	-	9.5e-12	45.4	0.3	1.8e-05	24.8	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
BCA_ABC_TP_C	PF12399.3	gi|385804193|ref|YP_005840593.1|	-	7.8e-09	35.0	0.0	1.3e-08	34.2	0.0	1.4	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
SMC_N	PF02463.14	gi|385804193|ref|YP_005840593.1|	-	4.8e-05	22.6	0.1	0.07	12.3	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|385804193|ref|YP_005840593.1|	-	0.00072	19.9	1.7	0.0012	19.2	1.2	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|385804193|ref|YP_005840593.1|	-	0.0012	18.3	0.5	0.0032	16.9	0.1	1.9	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
MukB	PF04310.7	gi|385804193|ref|YP_005840593.1|	-	0.0013	18.0	0.2	0.0022	17.3	0.1	1.3	1	0	0	1	1	1	1	MukB	N-terminal
BPD_transp_2	PF02653.11	gi|385804194|ref|YP_005840594.1|	-	1.1e-38	132.7	55.9	4.8e-23	81.4	23.5	3.1	2	1	1	3	3	3	2	Branched-chain	amino	acid	transport	system	/	permease	component
SP_C-Propep	PF08999.5	gi|385804194|ref|YP_005840594.1|	-	1.9	8.0	5.2	40	3.7	0.6	3.8	4	0	0	4	4	4	0	Surfactant	protein	C,	N	terminal	propeptide
BPD_transp_2	PF02653.11	gi|385804195|ref|YP_005840595.1|	-	2e-25	89.3	62.9	1.7e-21	76.4	43.6	3.1	1	1	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
Peripla_BP_6	PF13458.1	gi|385804196|ref|YP_005840596.1|	-	5e-41	141.1	10.8	6.3e-41	140.8	7.5	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.23	gi|385804196|ref|YP_005840596.1|	-	1.4e-34	119.4	0.2	2.1e-34	118.8	0.1	1.1	1	0	0	1	1	1	1	Receptor	family	ligand	binding	region
Peripla_BP_5	PF13433.1	gi|385804196|ref|YP_005840596.1|	-	4.7e-14	51.9	0.1	1.1e-10	40.8	0.0	2.4	2	0	0	2	2	2	2	Periplasmic	binding	protein	domain
TAT_signal	PF10518.4	gi|385804196|ref|YP_005840596.1|	-	0.0071	16.2	1.5	0.026	14.5	1.0	1.9	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
OrfB_IS605	PF01385.14	gi|385804197|ref|YP_005840597.1|	-	1.7e-61	207.4	0.6	2.2e-61	207.1	0.4	1.1	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|385804197|ref|YP_005840597.1|	-	7.5e-15	54.3	0.1	1.8e-14	53.1	0.1	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Tnp_DNA_bind	PF14706.1	gi|385804198|ref|YP_005840598.1|	-	2.7e-26	91.0	0.0	4.6e-26	90.2	0.0	1.4	1	0	0	1	1	1	1	Transposase	DNA-binding
DDE_Tnp_1	PF01609.16	gi|385804198|ref|YP_005840598.1|	-	4.3e-05	23.1	0.2	7.8e-05	22.3	0.1	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
Dimer_Tnp_Tn5	PF02281.11	gi|385804198|ref|YP_005840598.1|	-	0.058	13.5	0.1	0.15	12.1	0.0	1.7	2	0	0	2	2	2	0	Transposase	Tn5	dimerisation	domain
DUF2155	PF09923.4	gi|385804198|ref|YP_005840598.1|	-	0.13	12.3	0.0	0.26	11.4	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2155)
2TM	PF13239.1	gi|385804200|ref|YP_005840600.1|	-	0.041	13.9	0.2	0.049	13.6	0.1	1.1	1	0	0	1	1	1	0	2TM	domain
Claudin_2	PF13903.1	gi|385804201|ref|YP_005840601.1|	-	0.054	13.1	1.0	0.06	13.0	0.7	1.1	1	0	0	1	1	1	0	PMP-22/EMP/MP20/Claudin	tight	junction
DUF3262	PF11660.3	gi|385804201|ref|YP_005840601.1|	-	0.061	13.4	2.5	0.12	12.5	1.7	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3262)
HATPase_c	PF02518.21	gi|385804203|ref|YP_005840603.1|	-	1.7e-18	66.3	0.1	4.1e-18	65.1	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.5	gi|385804203|ref|YP_005840603.1|	-	4.5e-11	42.7	0.0	8.4e-11	41.8	0.0	1.5	1	0	0	1	1	1	1	PAS	fold
HisKA	PF00512.20	gi|385804203|ref|YP_005840603.1|	-	1.4e-10	41.0	3.3	6.2e-10	38.9	0.7	2.3	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_9	PF13426.1	gi|385804203|ref|YP_005840603.1|	-	1.7e-10	41.1	0.0	1e-09	38.6	0.0	2.1	2	0	0	2	2	2	1	PAS	domain
PAS	PF00989.19	gi|385804203|ref|YP_005840603.1|	-	3.9e-06	26.6	0.0	1.6e-05	24.6	0.0	2.1	2	0	0	2	2	2	1	PAS	fold
PAS_8	PF13188.1	gi|385804203|ref|YP_005840603.1|	-	7.9e-06	25.5	0.4	0.00035	20.3	0.0	3.1	3	0	0	3	3	3	1	PAS	domain
HATPase_c_3	PF13589.1	gi|385804203|ref|YP_005840603.1|	-	3.7e-05	23.4	0.3	0.00025	20.7	0.0	2.3	2	1	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_7	PF12860.2	gi|385804203|ref|YP_005840603.1|	-	0.013	15.4	0.1	0.16	11.9	0.0	2.7	2	1	1	3	3	3	0	PAS	fold
IMS_C	PF11799.3	gi|385804203|ref|YP_005840603.1|	-	0.047	13.6	0.0	0.1	12.5	0.0	1.5	1	0	0	1	1	1	0	impB/mucB/samB	family	C-terminal	domain
DUF726	PF05277.7	gi|385804206|ref|YP_005840606.1|	-	0.7	8.7	8.2	0.87	8.3	5.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF726)
UPF0444	PF15475.1	gi|385804206|ref|YP_005840606.1|	-	5.9	7.0	11.5	2.9	7.9	0.8	2.3	1	1	1	2	2	2	0	Transmembrane	protein	C12orf23,	UPF0444
Snf7	PF03357.16	gi|385804207|ref|YP_005840607.1|	-	0.029	13.7	2.2	3.1	7.1	0.1	2.0	1	1	1	2	2	2	0	Snf7
HTH_20	PF12840.2	gi|385804210|ref|YP_005840610.1|	-	0.0009	18.9	0.5	0.0013	18.5	0.3	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|385804210|ref|YP_005840610.1|	-	0.038	14.3	0.1	0.076	13.3	0.1	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Phage_prot_Gp6	PF05133.9	gi|385804210|ref|YP_005840610.1|	-	0.12	10.9	0.0	0.16	10.5	0.0	1.1	1	0	0	1	1	1	0	Phage	portal	protein,	SPP1	Gp6-like
TPP_enzyme_N	PF02776.13	gi|385804213|ref|YP_005840613.1|	-	0.052	13.0	0.1	0.063	12.7	0.1	1.2	1	0	0	1	1	1	0	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
LuxQ-periplasm	PF09308.5	gi|385804216|ref|YP_005840616.1|	-	0.031	13.6	0.2	0.04	13.2	0.1	1.1	1	0	0	1	1	1	0	LuxQ,	periplasmic
CBM_11	PF03425.8	gi|385804216|ref|YP_005840616.1|	-	0.041	13.5	0.1	0.051	13.2	0.1	1.2	1	0	0	1	1	1	0	Carbohydrate	binding	domain	(family	11)
DUF4488	PF14869.1	gi|385804216|ref|YP_005840616.1|	-	0.12	11.8	0.0	0.17	11.4	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4488)
SecY	PF00344.15	gi|385804218|ref|YP_005840618.1|	-	3.4e-93	312.3	20.8	4.2e-93	312.0	14.4	1.1	1	0	0	1	1	1	1	SecY	translocase
Plug_translocon	PF10559.4	gi|385804218|ref|YP_005840618.1|	-	7.8e-09	34.8	2.3	7.8e-09	34.8	1.6	2.1	2	0	0	2	2	2	1	Plug	domain	of	Sec61p
Ribosomal_L18e	PF00828.14	gi|385804219|ref|YP_005840619.1|	-	1.5e-25	90.0	0.3	2.4e-25	89.3	0.0	1.4	1	1	1	2	2	2	1	Ribosomal	protein	L18e/L15
Ribosomal_L30	PF00327.15	gi|385804220|ref|YP_005840620.1|	-	7.5e-14	51.0	0.0	1.3e-13	50.2	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L30p/L7e
OHCU_decarbox	PF09349.5	gi|385804220|ref|YP_005840620.1|	-	0.12	12.6	0.1	0.18	12.1	0.0	1.3	1	0	0	1	1	1	0	OHCU	decarboxylase
Ribosomal_S5	PF00333.15	gi|385804221|ref|YP_005840621.1|	-	9.9e-27	92.4	0.2	2.3e-26	91.3	0.2	1.7	1	0	0	1	1	1	1	Ribosomal	protein	S5,	N-terminal	domain
Ribosomal_S5_C	PF03719.10	gi|385804221|ref|YP_005840621.1|	-	1.1e-20	72.6	0.3	1.7e-20	72.0	0.2	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S5,	C-terminal	domain
Ribosomal_L18p	PF00861.17	gi|385804222|ref|YP_005840622.1|	-	6.5e-30	103.7	0.0	9.2e-30	103.3	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	L18p/L5e	family
Ribosomal_L19e	PF01280.15	gi|385804223|ref|YP_005840623.1|	-	1.9e-54	183.4	4.2	2.1e-54	183.3	2.9	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L19e
HTH_17	PF12728.2	gi|385804223|ref|YP_005840623.1|	-	0.045	14.0	0.1	9.2	6.6	0.0	3.3	3	0	0	3	3	3	0	Helix-turn-helix	domain
Ribosomal_L32e	PF01655.13	gi|385804224|ref|YP_005840624.1|	-	3.8e-36	123.4	0.1	1.3e-35	121.7	0.2	1.8	2	0	0	2	2	2	1	Ribosomal	protein	L32
HHH_5	PF14520.1	gi|385804224|ref|YP_005840624.1|	-	1.4e-09	37.9	1.5	2.8e-08	33.8	0.3	2.8	2	1	0	2	2	2	1	Helix-hairpin-helix	domain
DNA_pol_lambd_f	PF10391.4	gi|385804224|ref|YP_005840624.1|	-	0.00016	21.1	0.0	0.00035	20.0	0.0	1.6	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
HHH_2	PF12826.2	gi|385804224|ref|YP_005840624.1|	-	0.00082	19.2	0.2	0.0025	17.6	0.1	1.8	1	1	1	2	2	2	1	Helix-hairpin-helix	motif
HHH	PF00633.18	gi|385804224|ref|YP_005840624.1|	-	0.004	16.7	0.0	0.67	9.7	0.0	3.3	3	0	0	3	3	3	1	Helix-hairpin-helix	motif
Ribosomal_L6	PF00347.18	gi|385804225|ref|YP_005840625.1|	-	2.5e-22	79.1	0.1	6.8e-10	39.3	0.0	2.8	2	1	0	2	2	2	2	Ribosomal	protein	L6
OspE	PF02471.12	gi|385804225|ref|YP_005840625.1|	-	0.019	14.8	0.1	0.031	14.1	0.0	1.4	1	0	0	1	1	1	0	Borrelia	outer	surface	protein	E
Ribosomal_S8	PF00410.14	gi|385804226|ref|YP_005840626.1|	-	3.7e-23	81.7	0.0	5.2e-23	81.2	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S8
Ribosomal_S14	PF00253.16	gi|385804227|ref|YP_005840627.1|	-	1.1e-16	59.9	3.7	1.2e-16	59.7	2.6	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S14p/S29e
DUF4428	PF14471.1	gi|385804227|ref|YP_005840627.1|	-	0.0052	16.5	0.3	0.0066	16.1	0.2	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4428)
Ribosomal_L37ae	PF01780.14	gi|385804227|ref|YP_005840627.1|	-	0.016	15.0	0.7	0.02	14.7	0.5	1.2	1	0	0	1	1	1	0	Ribosomal	L37ae	protein	family
zf-P11	PF03854.9	gi|385804227|ref|YP_005840627.1|	-	0.019	14.4	0.6	0.026	13.9	0.4	1.2	1	0	0	1	1	1	0	P-11	zinc	finger
DUF2616	PF11077.3	gi|385804227|ref|YP_005840627.1|	-	0.068	12.6	0.4	0.066	12.7	0.2	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2616)
Ribosomal_S26e	PF01283.14	gi|385804227|ref|YP_005840627.1|	-	0.11	12.7	0.7	0.13	12.5	0.5	1.2	1	0	0	1	1	1	0	Ribosomal	protein	S26e
FYVE	PF01363.16	gi|385804227|ref|YP_005840627.1|	-	0.16	11.9	4.6	0.23	11.3	3.2	1.3	1	1	0	1	1	1	0	FYVE	zinc	finger
zf-C2HC_2	PF13913.1	gi|385804227|ref|YP_005840627.1|	-	3	7.6	6.4	3.8	7.2	1.3	2.1	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
Ribosomal_L5_C	PF00673.16	gi|385804228|ref|YP_005840628.1|	-	1e-22	79.6	0.0	1.7e-22	78.9	0.0	1.4	1	0	0	1	1	1	1	ribosomal	L5P	family	C-terminus
Ribosomal_L5	PF00281.14	gi|385804228|ref|YP_005840628.1|	-	3.3e-14	52.4	0.0	6.2e-14	51.5	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L5
5_nucleotid_C	PF02872.13	gi|385804228|ref|YP_005840628.1|	-	0.093	12.7	0.0	0.11	12.4	0.0	1.2	1	0	0	1	1	1	0	5'-nucleotidase,	C-terminal	domain
Ribosomal_S4e	PF00900.15	gi|385804229|ref|YP_005840629.1|	-	1.4e-24	85.5	0.0	2.5e-24	84.7	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	family	S4e
RS4NT	PF08071.7	gi|385804229|ref|YP_005840629.1|	-	8.6e-12	44.7	0.1	1.7e-11	43.7	0.0	1.4	1	0	0	1	1	1	1	RS4NT	(NUC023)	domain
S4	PF01479.20	gi|385804229|ref|YP_005840629.1|	-	8.3e-07	28.3	0.1	1.5e-06	27.5	0.0	1.5	1	0	0	1	1	1	1	S4	domain
KOW	PF00467.24	gi|385804229|ref|YP_005840629.1|	-	0.05	13.3	0.1	0.15	11.8	0.0	1.9	1	0	0	1	1	1	0	KOW	motif
KOW	PF00467.24	gi|385804230|ref|YP_005840630.1|	-	9e-05	22.0	0.8	0.00017	21.1	0.6	1.5	1	0	0	1	1	1	1	KOW	motif
Ribosomal_L14	PF00238.14	gi|385804231|ref|YP_005840631.1|	-	2.7e-37	127.2	0.1	3e-37	127.0	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L14p/L23e
Ribosomal_S17	PF00366.15	gi|385804232|ref|YP_005840632.1|	-	5.7e-28	96.7	0.5	6.9e-28	96.4	0.3	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S17
UPF0086	PF01868.11	gi|385804233|ref|YP_005840633.1|	-	7.9e-22	76.7	0.2	9.6e-14	50.8	0.0	3.1	2	1	0	2	2	2	2	Domain	of	unknown	function	UPF0086
Ribosomal_L29	PF00831.18	gi|385804234|ref|YP_005840634.1|	-	2.1e-18	65.7	0.2	2.3e-18	65.6	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	L29	protein
FUSC-like	PF12805.2	gi|385804234|ref|YP_005840634.1|	-	0.052	12.4	0.0	0.059	12.2	0.0	1.0	1	0	0	1	1	1	0	FUSC-like	inner	membrane	protein	yccS
KH_2	PF07650.12	gi|385804235|ref|YP_005840635.1|	-	2.9e-15	55.5	0.0	6.4e-15	54.4	0.0	1.6	1	0	0	1	1	1	1	KH	domain
Ribosomal_S3_C	PF00189.15	gi|385804235|ref|YP_005840635.1|	-	6.8e-15	55.0	0.3	1.1e-14	54.4	0.2	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S3,	C-terminal	domain
KH_1	PF00013.24	gi|385804235|ref|YP_005840635.1|	-	0.0018	17.8	0.1	0.0018	17.8	0.1	2.3	2	0	0	2	2	2	1	KH	domain
NEAT	PF05031.7	gi|385804235|ref|YP_005840635.1|	-	0.01	15.8	0.7	0.024	14.6	0.5	1.6	1	0	0	1	1	1	0	Iron	Transport-associated	domain
KH_3	PF13014.1	gi|385804235|ref|YP_005840635.1|	-	0.01	15.4	0.9	0.055	13.1	0.6	2.3	1	0	0	1	1	1	0	KH	domain
KH_5	PF13184.1	gi|385804235|ref|YP_005840635.1|	-	0.022	14.5	0.0	0.091	12.5	0.0	2.0	2	0	0	2	2	2	0	NusA-like	KH	domain
KH_4	PF13083.1	gi|385804235|ref|YP_005840635.1|	-	0.27	10.9	0.1	0.27	10.9	0.1	2.3	2	1	0	2	2	2	0	KH	domain
Ribosomal_L22	PF00237.14	gi|385804236|ref|YP_005840636.1|	-	6.4e-24	83.9	0.0	7.5e-24	83.7	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L22p/L17e
Ribosomal_S19	PF00203.16	gi|385804237|ref|YP_005840637.1|	-	1.8e-27	94.7	0.0	2.5e-27	94.2	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S19
Ribosomal_L2_C	PF03947.13	gi|385804238|ref|YP_005840638.1|	-	2.4e-46	156.7	0.9	3.3e-46	156.3	0.6	1.2	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	C-terminal	domain
Ribosomal_L2	PF00181.18	gi|385804238|ref|YP_005840638.1|	-	7.4e-15	54.6	0.0	2.4e-14	53.0	0.0	1.9	2	0	0	2	2	2	1	Ribosomal	Proteins	L2,	RNA	binding	domain
Ribosomal_L23	PF00276.15	gi|385804239|ref|YP_005840639.1|	-	5.2e-17	61.5	0.6	9.9e-17	60.6	0.4	1.4	1	1	0	1	1	1	1	Ribosomal	protein	L23
P2	PF07194.6	gi|385804239|ref|YP_005840639.1|	-	0.0028	17.4	2.1	0.0042	16.9	1.3	1.4	1	1	0	1	1	1	1	P2	response	regulator	binding	domain
Ribosomal_L4	PF00573.17	gi|385804240|ref|YP_005840640.1|	-	1.4e-44	151.8	0.3	1.6e-44	151.6	0.2	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L4/L1	family
Ribosomal_L3	PF00297.17	gi|385804241|ref|YP_005840641.1|	-	1.3e-83	280.4	0.0	2e-83	279.7	0.0	1.3	2	0	0	2	2	2	1	Ribosomal	protein	L3
Methyltrn_RNA_3	PF02598.12	gi|385804242|ref|YP_005840642.1|	-	6.4e-46	157.0	0.0	9.4e-46	156.4	0.0	1.2	1	0	0	1	1	1	1	Putative	RNA	methyltransferase
eIF-1a	PF01176.14	gi|385804242|ref|YP_005840642.1|	-	0.002	17.5	0.2	0.037	13.4	0.1	2.4	2	0	0	2	2	2	1	Translation	initiation	factor	1A	/	IF-1
DDE_Tnp_1	PF01609.16	gi|385804243|ref|YP_005840643.1|	-	4.6e-20	72.0	0.0	6.1e-20	71.6	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_4	PF13701.1	gi|385804243|ref|YP_005840643.1|	-	0.0035	15.5	0.0	0.0054	14.9	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain	group	1
DUF2015	PF09435.5	gi|385804243|ref|YP_005840643.1|	-	0.039	13.7	0.2	0.097	12.4	0.1	1.7	1	0	0	1	1	1	0	Fungal	protein	of	unknown	function	(DUF2015)
TPR_16	PF13432.1	gi|385804244|ref|YP_005840644.1|	-	0.34	11.6	3.3	0.32	11.7	0.3	2.3	2	0	0	2	2	2	0	Tetratricopeptide	repeat
DNA_ligase_ZBD	PF03119.11	gi|385804244|ref|YP_005840644.1|	-	0.38	10.4	2.4	1.3	8.7	0.1	2.2	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
DisA_N	PF02457.11	gi|385804245|ref|YP_005840645.1|	-	1e-08	34.3	0.4	2.3e-08	33.2	0.3	1.6	1	1	0	1	1	1	1	DisA	bacterial	checkpoint	controller	nucleotide-binding
DisA_N	PF02457.11	gi|385804246|ref|YP_005840646.1|	-	0.00074	18.6	0.0	0.0019	17.3	0.0	1.6	1	1	0	1	1	1	1	DisA	bacterial	checkpoint	controller	nucleotide-binding
FMN_dh	PF01070.13	gi|385804247|ref|YP_005840647.1|	-	5.4e-127	423.5	0.0	6.3e-127	423.3	0.0	1.0	1	0	0	1	1	1	1	FMN-dependent	dehydrogenase
ThiG	PF05690.9	gi|385804247|ref|YP_005840647.1|	-	3.5e-07	29.5	0.1	0.0069	15.4	0.0	2.2	1	1	1	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
IMPDH	PF00478.20	gi|385804247|ref|YP_005840647.1|	-	1.5e-05	24.1	2.5	1.5e-05	24.0	0.4	2.0	2	1	1	3	3	3	1	IMP	dehydrogenase	/	GMP	reductase	domain
His_biosynth	PF00977.16	gi|385804247|ref|YP_005840647.1|	-	0.00078	18.7	0.1	0.45	9.7	0.0	3.1	2	1	2	4	4	4	2	Histidine	biosynthesis	protein
PcrB	PF01884.12	gi|385804247|ref|YP_005840647.1|	-	0.034	13.3	0.4	2.1	7.5	0.0	2.3	1	1	1	2	2	2	0	PcrB	family
Glu_synthase	PF01645.12	gi|385804247|ref|YP_005840647.1|	-	0.082	11.8	0.6	0.14	11.0	0.4	1.4	1	1	0	1	1	1	0	Conserved	region	in	glutamate	synthase
NMO	PF03060.10	gi|385804247|ref|YP_005840647.1|	-	0.098	11.7	2.3	0.18	10.9	1.6	1.4	1	0	0	1	1	1	0	Nitronate	monooxygenase
DDE_5	PF13546.1	gi|385804248|ref|YP_005840648.1|	-	5.5e-20	71.3	0.0	8.7e-20	70.6	0.0	1.2	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.16	gi|385804248|ref|YP_005840648.1|	-	2.8e-17	62.9	0.4	5.2e-17	62.0	0.1	1.6	2	1	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.7	gi|385804248|ref|YP_005840648.1|	-	0.00011	21.3	0.5	0.00045	19.3	0.3	1.8	1	1	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1_6	PF13751.1	gi|385804248|ref|YP_005840648.1|	-	0.01	15.8	0.0	0.035	14.1	0.0	1.9	2	0	0	2	2	2	0	Transposase	DDE	domain
PGA_cap	PF09587.5	gi|385804249|ref|YP_005840649.1|	-	2.6e-65	220.2	0.1	3.4e-65	219.8	0.1	1.2	1	0	0	1	1	1	1	Bacterial	capsule	synthesis	protein	PGA_cap
CarboxypepD_reg	PF13620.1	gi|385804249|ref|YP_005840649.1|	-	1.2e-06	28.4	0.1	5.2e-06	26.4	0.1	2.1	1	0	0	1	1	1	1	Carboxypeptidase	regulatory-like	domain
AP_endonuc_2	PF01261.19	gi|385804249|ref|YP_005840649.1|	-	0.0052	16.0	0.1	0.085	12.1	0.0	2.3	1	1	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
UCR_Fe-S_N	PF10399.4	gi|385804249|ref|YP_005840649.1|	-	0.022	13.8	0.2	0.022	13.8	0.1	2.2	2	0	0	2	2	2	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
eIF-5_eIF-2B	PF01873.12	gi|385804250|ref|YP_005840650.1|	-	6.6e-27	93.6	0.0	9.1e-27	93.1	0.0	1.2	1	0	0	1	1	1	1	Domain	found	in	IF2B/IF5
TRAM	PF01938.15	gi|385804250|ref|YP_005840650.1|	-	2.2e-09	36.9	2.1	3.9e-09	36.1	1.4	1.4	1	0	0	1	1	1	1	TRAM	domain
DUF2387	PF09526.5	gi|385804250|ref|YP_005840650.1|	-	0.041	13.8	2.8	0.29	11.1	1.8	2.2	1	1	1	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
DUF35_N	PF12172.3	gi|385804250|ref|YP_005840650.1|	-	0.065	13.1	0.3	9.5	6.2	0.0	2.3	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DNA_RNApol_7kD	PF03604.8	gi|385804250|ref|YP_005840650.1|	-	0.085	12.3	0.5	13	5.4	0.0	2.3	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Lar_restr_allev	PF14354.1	gi|385804250|ref|YP_005840650.1|	-	0.31	11.3	2.4	2.5	8.4	1.7	2.1	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
DS	PF01916.12	gi|385804252|ref|YP_005840652.1|	-	4.7e-73	245.9	0.0	1.7e-51	175.1	0.0	2.0	2	0	0	2	2	2	2	Deoxyhypusine	synthase
Peptidase_M22	PF00814.20	gi|385804252|ref|YP_005840652.1|	-	0.0086	15.6	0.0	0.014	14.9	0.0	1.3	1	0	0	1	1	1	1	Glycoprotease	family
Med8	PF10232.4	gi|385804252|ref|YP_005840652.1|	-	0.01	15.3	0.0	0.016	14.7	0.0	1.3	1	0	0	1	1	1	0	Mediator	of	RNA	polymerase	II	transcription	complex	subunit	8
DDE_Tnp_1	PF01609.16	gi|385804253|ref|YP_005840653.1|	-	1.5e-11	44.2	0.0	2.4e-11	43.5	0.0	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.7	gi|385804253|ref|YP_005840653.1|	-	0.0011	18.0	0.0	0.0016	17.5	0.0	1.2	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1_2	PF13586.1	gi|385804253|ref|YP_005840653.1|	-	0.0032	17.6	0.0	0.0078	16.3	0.0	1.6	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.1	gi|385804253|ref|YP_005840653.1|	-	0.18	11.8	0.0	0.31	11.0	0.0	1.3	1	0	0	1	1	1	0	Transposase	DDE	domain
NIF3	PF01784.13	gi|385804254|ref|YP_005840654.1|	-	1e-47	162.7	0.0	1.2e-47	162.5	0.0	1.0	1	0	0	1	1	1	1	NIF3	(NGG1p	interacting	factor	3)
PhoQ_Sensor	PF08918.5	gi|385804255|ref|YP_005840655.1|	-	0.12	11.8	1.8	11	5.5	0.0	2.8	3	0	0	3	3	3	0	PhoQ	Sensor
TMEM191C	PF15194.1	gi|385804256|ref|YP_005840656.1|	-	0.037	13.9	0.0	0.04	13.8	0.0	1.1	1	0	0	1	1	1	0	TMEM191C	family
zf-C2H2	PF00096.21	gi|385804256|ref|YP_005840656.1|	-	0.058	13.7	3.4	0.1	13.0	2.3	1.5	1	1	0	1	1	1	0	Zinc	finger,	C2H2	type
zf-H2C2_2	PF13465.1	gi|385804256|ref|YP_005840656.1|	-	0.11	12.7	0.1	0.11	12.7	0.1	1.6	2	0	0	2	2	2	0	Zinc-finger	double	domain
NinG	PF05766.7	gi|385804256|ref|YP_005840656.1|	-	0.13	11.9	0.0	0.15	11.8	0.0	1.0	1	0	0	1	1	1	0	Bacteriophage	Lambda	NinG	protein
zf-C2H2_4	PF13894.1	gi|385804256|ref|YP_005840656.1|	-	0.82	10.1	3.2	1.3	9.5	2.2	1.4	1	0	0	1	1	1	0	C2H2-type	zinc	finger
Iron_transport	PF10634.4	gi|385804257|ref|YP_005840657.1|	-	1.5e-05	24.9	0.1	0.01	15.7	0.0	2.5	2	2	0	2	2	2	2	Fe2+	transport	protein
CoA_binding	PF02629.14	gi|385804258|ref|YP_005840658.1|	-	6.8e-24	84.2	2.1	1.4e-23	83.2	0.5	2.2	2	0	0	2	2	2	1	CoA	binding	domain
Ligase_CoA	PF00549.14	gi|385804258|ref|YP_005840658.1|	-	2.1e-13	50.1	0.9	4.2e-13	49.1	0.6	1.5	1	0	0	1	1	1	1	CoA-ligase
Succ_CoA_lig	PF13607.1	gi|385804258|ref|YP_005840658.1|	-	4.6e-08	32.7	0.0	7.4e-08	32.0	0.0	1.4	1	0	0	1	1	1	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.1	gi|385804258|ref|YP_005840658.1|	-	5.9e-07	29.6	0.0	3.6e-05	23.8	0.0	2.2	2	0	0	2	2	2	1	CoA	binding	domain
GFO_IDH_MocA	PF01408.17	gi|385804258|ref|YP_005840658.1|	-	0.09	13.3	0.1	0.28	11.6	0.0	1.9	2	0	0	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
ATP-grasp_2	PF08442.5	gi|385804259|ref|YP_005840659.1|	-	8.2e-64	214.7	0.2	1.3e-63	214.0	0.1	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_5	PF13549.1	gi|385804259|ref|YP_005840659.1|	-	8.1e-19	67.7	1.5	9.5e-19	67.4	0.4	1.6	2	0	0	2	2	2	1	ATP-grasp	domain
Ligase_CoA	PF00549.14	gi|385804259|ref|YP_005840659.1|	-	1.6e-12	47.3	1.6	1.6e-12	47.3	1.1	1.7	2	0	0	2	2	2	1	CoA-ligase
CPSase_L_D2	PF02786.12	gi|385804259|ref|YP_005840659.1|	-	6.8e-10	38.5	1.8	9.3e-09	34.8	0.2	2.2	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_4	PF13535.1	gi|385804259|ref|YP_005840659.1|	-	9.5e-09	35.2	0.7	4.8e-08	32.9	0.0	2.3	3	0	0	3	3	3	1	ATP-grasp	domain
GARS_A	PF01071.14	gi|385804259|ref|YP_005840659.1|	-	5.8e-07	29.2	2.4	7.3e-07	28.9	0.1	2.0	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATP-grasp	PF02222.17	gi|385804259|ref|YP_005840659.1|	-	6.8e-07	28.7	0.0	1.3e-06	27.9	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
Ribonuc_red_lgC	PF02867.10	gi|385804260|ref|YP_005840660.1|	-	3.6e-134	448.2	0.2	4e-102	342.5	0.0	3.2	3	0	0	3	3	3	3	Ribonucleotide	reductase,	barrel	domain
Ribonuc_red_lgN	PF00317.16	gi|385804260|ref|YP_005840660.1|	-	3e-27	94.2	0.0	1.5e-26	91.9	0.0	2.3	2	0	0	2	2	2	1	Ribonucleotide	reductase,	all-alpha	domain
TSCPD	PF12637.2	gi|385804260|ref|YP_005840660.1|	-	1.7e-26	91.9	0.0	7.4e-26	89.9	0.0	2.2	2	0	0	2	2	2	1	TSCPD	domain
Intein_splicing	PF14890.1	gi|385804260|ref|YP_005840660.1|	-	8.2e-21	74.2	0.0	9e-15	54.3	0.0	2.5	2	0	0	2	2	2	2	Intein	splicing	domain
LAGLIDADG_3	PF14528.1	gi|385804260|ref|YP_005840660.1|	-	1.7e-08	34.5	0.0	0.0039	17.3	0.0	4.5	5	0	0	5	5	5	2	LAGLIDADG-like	domain
PT-HINT	PF07591.6	gi|385804260|ref|YP_005840660.1|	-	1.7e-07	31.1	0.0	0.036	13.9	0.0	3.5	3	0	0	3	3	3	2	Pretoxin	HINT	domain
Hint	PF01079.15	gi|385804260|ref|YP_005840660.1|	-	9.3e-06	24.9	0.0	0.00017	20.8	0.0	2.5	2	0	0	2	2	2	1	Hint	module
LAGLIDADG_WhiA	PF14527.1	gi|385804260|ref|YP_005840660.1|	-	0.019	14.8	0.1	3.8	7.4	0.0	3.5	3	0	0	3	3	3	0	WhiA	LAGLIDADG-like	domain
zf-Mss51	PF13824.1	gi|385804261|ref|YP_005840661.1|	-	0.071	12.9	6.7	0.088	12.6	4.6	1.1	1	0	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Lar_restr_allev	PF14354.1	gi|385804261|ref|YP_005840661.1|	-	1.4	9.2	5.6	1.9	8.8	3.9	1.3	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
SQS_PSY	PF00494.14	gi|385804262|ref|YP_005840662.1|	-	4.9e-64	216.2	8.6	6.5e-64	215.7	6.0	1.1	1	0	0	1	1	1	1	Squalene/phytoene	synthase
DUF422	PF04240.7	gi|385804263|ref|YP_005840663.1|	-	1.3e-78	263.2	14.8	1.6e-78	263.0	10.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF422)
DUF2512	PF10710.4	gi|385804263|ref|YP_005840663.1|	-	0.85	9.0	8.9	0.041	13.3	0.9	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2512)
UbiA	PF01040.13	gi|385804264|ref|YP_005840664.1|	-	1.5e-24	86.6	23.5	2.1e-24	86.1	16.3	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
Amino_oxidase	PF01593.19	gi|385804265|ref|YP_005840665.1|	-	1.3e-21	77.2	0.1	3.6e-21	75.7	0.1	1.7	1	1	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.1	gi|385804265|ref|YP_005840665.1|	-	1.4e-17	63.5	0.0	3.7e-17	62.0	0.0	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.19	gi|385804265|ref|YP_005840665.1|	-	4.7e-14	52.0	3.0	1.5e-08	33.9	0.6	2.4	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.22	gi|385804265|ref|YP_005840665.1|	-	6.9e-10	39.1	0.9	1.2e-06	28.8	0.2	2.7	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|385804265|ref|YP_005840665.1|	-	8.8e-07	27.7	0.0	0.00042	18.9	0.1	2.2	2	0	0	2	2	2	2	HI0933-like	protein
FAD_binding_2	PF00890.19	gi|385804265|ref|YP_005840665.1|	-	2.4e-06	26.6	2.1	3.3e-06	26.2	0.4	1.9	2	0	0	2	2	2	1	FAD	binding	domain
Pyr_redox_3	PF13738.1	gi|385804265|ref|YP_005840665.1|	-	3.3e-06	27.3	0.0	0.0018	18.3	0.0	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.9	gi|385804265|ref|YP_005840665.1|	-	6.9e-06	26.0	0.0	5.7e-05	23.0	0.1	2.2	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|385804265|ref|YP_005840665.1|	-	8.4e-05	21.7	0.6	0.00013	21.1	0.4	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Thi4	PF01946.12	gi|385804265|ref|YP_005840665.1|	-	0.00012	21.2	0.4	0.00023	20.3	0.3	1.4	1	0	0	1	1	1	1	Thi4	family
FAD_oxidored	PF12831.2	gi|385804265|ref|YP_005840665.1|	-	0.0003	19.9	0.0	0.00042	19.5	0.0	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
NAD_binding_7	PF13241.1	gi|385804265|ref|YP_005840665.1|	-	0.0032	17.7	0.0	0.0055	16.9	0.0	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
Strep_67kDa_ant	PF06100.6	gi|385804265|ref|YP_005840665.1|	-	0.0052	15.1	0.0	0.0077	14.6	0.0	1.2	1	0	0	1	1	1	1	Streptococcal	67	kDa	myosin-cross-reactive	antigen	like	family
GDI	PF00996.13	gi|385804265|ref|YP_005840665.1|	-	0.0058	15.0	0.2	2.2	6.5	0.0	2.2	2	0	0	2	2	2	2	GDP	dissociation	inhibitor
GIDA	PF01134.17	gi|385804265|ref|YP_005840665.1|	-	0.025	13.4	0.3	0.039	12.7	0.2	1.2	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
AlaDh_PNT_C	PF01262.16	gi|385804265|ref|YP_005840665.1|	-	0.049	13.2	0.0	0.12	11.9	0.0	1.6	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
UDPG_MGDP_dh_N	PF03721.9	gi|385804265|ref|YP_005840665.1|	-	0.063	12.6	0.3	0.11	11.8	0.2	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Trp_halogenase	PF04820.9	gi|385804265|ref|YP_005840665.1|	-	0.13	10.8	0.2	0.22	10.1	0.2	1.3	1	0	0	1	1	1	0	Tryptophan	halogenase
NAD_binding_9	PF13454.1	gi|385804265|ref|YP_005840665.1|	-	0.19	11.5	0.8	1.4	8.6	0.1	2.3	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Usp	PF00582.21	gi|385804266|ref|YP_005840666.1|	-	2.2e-12	47.3	1.2	2.6e-12	47.1	0.8	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
NYN	PF01936.13	gi|385804267|ref|YP_005840667.1|	-	2e-20	73.5	0.1	3.3e-20	72.8	0.1	1.3	1	0	0	1	1	1	1	NYN	domain
TatD_DNase	PF01026.16	gi|385804268|ref|YP_005840668.1|	-	4.5e-23	81.7	0.0	1e-21	77.3	0.0	2.0	1	1	0	1	1	1	1	TatD	related	DNase
DUF2150	PF09920.4	gi|385804269|ref|YP_005840669.1|	-	4.3e-72	241.7	8.0	4.8e-72	241.5	5.5	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2150)
HrpJ	PF07201.6	gi|385804269|ref|YP_005840669.1|	-	0.024	14.6	1.1	0.23	11.4	0.6	2.0	2	0	0	2	2	2	0	HrpJ-like	domain
HMG_CoA_synt_N	PF01154.12	gi|385804270|ref|YP_005840670.1|	-	4.7e-25	88.1	0.0	8.1e-25	87.3	0.0	1.4	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	synthase	N	terminal
HMG_CoA_synt_C	PF08540.5	gi|385804270|ref|YP_005840670.1|	-	1.1e-19	71.0	0.0	2.3e-19	69.9	0.0	1.5	2	0	0	2	2	2	1	Hydroxymethylglutaryl-coenzyme	A	synthase	C	terminal
HTH_31	PF13560.1	gi|385804271|ref|YP_005840671.1|	-	4.4e-09	36.4	0.0	1.6e-08	34.6	0.0	1.9	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.2	gi|385804271|ref|YP_005840671.1|	-	3.5e-08	33.3	0.0	8.4e-08	32.1	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.17	gi|385804271|ref|YP_005840671.1|	-	5.9e-08	32.4	0.0	1.6e-07	31.0	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix
HTH_11	PF08279.7	gi|385804271|ref|YP_005840671.1|	-	0.032	13.8	0.1	0.34	10.6	0.0	2.5	3	0	0	3	3	3	0	HTH	domain
DUF457	PF04307.9	gi|385804272|ref|YP_005840672.1|	-	1e-09	37.9	1.7	1.1e-09	37.7	1.2	1.2	1	0	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
Acetyltransf_1	PF00583.19	gi|385804273|ref|YP_005840673.1|	-	2.5e-13	49.8	0.0	4.4e-13	49.0	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|385804273|ref|YP_005840673.1|	-	9.5e-09	35.4	0.0	1.5e-08	34.8	0.0	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|385804273|ref|YP_005840673.1|	-	8.8e-08	32.1	0.0	1.4e-07	31.4	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|385804273|ref|YP_005840673.1|	-	6.4e-06	26.2	0.0	1e-05	25.6	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.1	gi|385804273|ref|YP_005840673.1|	-	4.3e-05	23.6	0.0	5.3e-05	23.4	0.0	1.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|385804273|ref|YP_005840673.1|	-	4.4e-05	23.2	0.0	0.00012	21.8	0.0	1.7	2	0	0	2	2	2	1	GCN5-related	N-acetyl-transferase
Acetyltransf_9	PF13527.1	gi|385804273|ref|YP_005840673.1|	-	0.0049	16.7	0.0	0.0093	15.8	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|385804273|ref|YP_005840673.1|	-	0.025	14.5	0.0	0.06	13.2	0.0	1.4	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|385804273|ref|YP_005840673.1|	-	0.028	14.1	0.0	0.05	13.3	0.0	1.4	1	0	0	1	1	1	0	FR47-like	protein
TauE	PF01925.14	gi|385804274|ref|YP_005840674.1|	-	0.033	13.6	23.0	0.045	13.1	15.9	1.1	1	0	0	1	1	1	0	Sulfite	exporter	TauE/SafE
DUF3817	PF12823.2	gi|385804274|ref|YP_005840674.1|	-	1.5	9.2	6.6	0.14	12.5	1.1	2.0	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3817)
RseC_MucC	PF04246.7	gi|385804274|ref|YP_005840674.1|	-	6.4	6.3	12.1	0.36	10.4	1.9	2.5	2	1	0	2	2	2	0	Positive	regulator	of	sigma(E),	RseC/MucC
tRNA_SAD	PF07973.9	gi|385804275|ref|YP_005840675.1|	-	1.4e-11	44.0	0.0	2.5e-11	43.2	0.0	1.4	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
tRNA-synt_2c	PF01411.14	gi|385804275|ref|YP_005840675.1|	-	1.9e-10	39.6	0.1	2.9e-10	39.0	0.1	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
DHHA1	PF02272.14	gi|385804275|ref|YP_005840675.1|	-	0.013	15.1	3.0	0.027	14.1	1.0	2.3	2	0	0	2	2	2	0	DHHA1	domain
HTH_31	PF13560.1	gi|385804276|ref|YP_005840676.1|	-	0.0099	16.0	2.5	0.035	14.3	0.1	2.6	2	1	1	3	3	3	1	Helix-turn-helix	domain
HTH_25	PF13413.1	gi|385804276|ref|YP_005840676.1|	-	0.014	14.9	0.0	0.027	14.0	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
PhnA_Zn_Ribbon	PF08274.7	gi|385804276|ref|YP_005840676.1|	-	0.015	15.0	1.4	0.034	13.9	1.0	1.5	1	0	0	1	1	1	0	PhnA	Zinc-Ribbon
MRI	PF15325.1	gi|385804276|ref|YP_005840676.1|	-	0.044	14.7	0.9	0.065	14.2	0.6	1.3	1	0	0	1	1	1	0	Modulator	of	retrovirus	infection
FLO_LFY	PF01698.11	gi|385804276|ref|YP_005840676.1|	-	0.073	11.9	0.1	0.082	11.7	0.1	1.1	1	0	0	1	1	1	0	Floricaula	/	Leafy	protein
Toprim_4	PF13662.1	gi|385804278|ref|YP_005840678.1|	-	0.014	15.3	0.1	0.017	15.0	0.1	1.2	1	0	0	1	1	1	0	Toprim	domain
zf-ribbon_3	PF13248.1	gi|385804279|ref|YP_005840679.1|	-	4.5e-05	22.4	0.9	6.8e-05	21.9	0.6	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|385804279|ref|YP_005840679.1|	-	0.00018	20.8	1.1	0.0003	20.1	0.8	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|385804279|ref|YP_005840679.1|	-	0.00056	19.6	0.3	0.00086	19.0	0.2	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
NOB1_Zn_bind	PF08772.6	gi|385804279|ref|YP_005840679.1|	-	0.029	14.2	0.6	0.074	12.8	0.4	1.6	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
UPF0547	PF10571.4	gi|385804279|ref|YP_005840679.1|	-	0.097	12.3	0.2	0.19	11.4	0.1	1.5	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
zf-RING_4	PF14570.1	gi|385804279|ref|YP_005840679.1|	-	0.11	12.1	0.5	0.19	11.3	0.4	1.3	1	0	0	1	1	1	0	RING/Ubox	like	zinc-binding	domain
Phage_integrase	PF00589.17	gi|385804280|ref|YP_005840680.1|	-	8e-11	41.9	0.2	1.3e-10	41.1	0.2	1.3	1	0	0	1	1	1	1	Phage	integrase	family
DUF420	PF04238.7	gi|385804281|ref|YP_005840681.1|	-	6.4e-38	129.7	14.1	6.4e-38	129.7	9.8	1.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF420)
DUF2306	PF10067.4	gi|385804281|ref|YP_005840681.1|	-	0.002	18.2	17.3	0.0072	16.4	7.5	3.1	1	1	3	4	4	4	2	Predicted	membrane	protein	(DUF2306)
DUF1240	PF06836.7	gi|385804281|ref|YP_005840681.1|	-	0.014	15.6	3.6	0.014	15.6	2.5	2.5	1	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1240)
RrnaAD	PF00398.15	gi|385804282|ref|YP_005840682.1|	-	9.6e-50	169.0	0.0	1.1e-49	168.7	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_26	PF13659.1	gi|385804282|ref|YP_005840682.1|	-	5.8e-09	36.0	0.1	1.4e-08	34.7	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|385804282|ref|YP_005840682.1|	-	0.0005	20.6	0.0	0.001	19.5	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
NodS	PF05401.6	gi|385804282|ref|YP_005840682.1|	-	0.015	14.7	0.0	0.055	12.8	0.0	1.8	2	0	0	2	2	2	0	Nodulation	protein	S	(NodS)
MTS	PF05175.9	gi|385804282|ref|YP_005840682.1|	-	0.023	14.0	0.0	0.047	13.0	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_12	PF08242.7	gi|385804282|ref|YP_005840682.1|	-	0.041	14.3	0.2	0.15	12.5	0.0	1.9	2	0	0	2	2	2	0	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|385804282|ref|YP_005840682.1|	-	0.17	11.4	0.0	0.24	11.0	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|385804283|ref|YP_005840683.1|	-	1.5e-16	60.4	0.1	2.2e-16	59.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|385804283|ref|YP_005840683.1|	-	1.4e-12	47.3	0.0	1.8e-12	46.9	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_18	PF12847.2	gi|385804283|ref|YP_005840683.1|	-	3.5e-06	27.5	0.0	5.8e-06	26.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|385804283|ref|YP_005840683.1|	-	5.4e-05	23.6	0.0	0.00054	20.3	0.0	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|385804283|ref|YP_005840683.1|	-	0.0001	22.7	0.0	0.00095	19.5	0.0	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.14	gi|385804283|ref|YP_005840683.1|	-	0.00057	19.4	0.0	0.00076	19.0	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_31	PF13847.1	gi|385804283|ref|YP_005840683.1|	-	0.001	18.6	0.0	0.0013	18.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|385804283|ref|YP_005840683.1|	-	0.0011	18.6	0.0	0.0054	16.4	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|385804283|ref|YP_005840683.1|	-	0.0048	17.2	0.0	0.0068	16.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
DUF938	PF06080.7	gi|385804283|ref|YP_005840683.1|	-	0.013	15.0	0.1	0.02	14.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF938)
PrmA	PF06325.8	gi|385804283|ref|YP_005840683.1|	-	0.014	14.5	0.4	0.025	13.7	0.1	1.5	2	0	0	2	2	2	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_3	PF01596.12	gi|385804283|ref|YP_005840683.1|	-	0.018	14.1	0.0	0.056	12.4	0.0	1.7	2	0	0	2	2	2	0	O-methyltransferase
UPF0146	PF03686.8	gi|385804283|ref|YP_005840683.1|	-	0.057	13.2	0.0	0.095	12.5	0.0	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0146)
Ubie_methyltran	PF01209.13	gi|385804283|ref|YP_005840683.1|	-	0.13	11.3	0.0	0.3	10.1	0.0	1.5	2	0	0	2	2	2	0	ubiE/COQ5	methyltransferase	family
Meth_synt_1	PF08267.7	gi|385804284|ref|YP_005840684.1|	-	1.6e-21	76.9	0.0	5.1e-20	71.9	0.0	2.0	1	1	1	2	2	2	1	Cobalamin-independent	synthase,	N-terminal	domain
Meth_synt_2	PF01717.13	gi|385804284|ref|YP_005840684.1|	-	1.4e-05	24.2	0.0	3.3e-05	23.0	0.0	1.6	1	1	0	1	1	1	1	Cobalamin-independent	synthase,	Catalytic	domain
PIG-L	PF02585.12	gi|385804284|ref|YP_005840684.1|	-	0.047	14.1	0.0	0.082	13.4	0.0	1.4	1	0	0	1	1	1	0	GlcNAc-PI	de-N-acetylase
Meth_synt_2	PF01717.13	gi|385804285|ref|YP_005840685.1|	-	1.9e-76	257.1	0.0	2.3e-76	256.8	0.0	1.1	1	0	0	1	1	1	1	Cobalamin-independent	synthase,	Catalytic	domain
Meth_synt_1	PF08267.7	gi|385804285|ref|YP_005840685.1|	-	2.1e-20	73.2	0.0	3.9e-20	72.3	0.0	1.4	1	1	1	2	2	2	1	Cobalamin-independent	synthase,	N-terminal	domain
URO-D	PF01208.12	gi|385804285|ref|YP_005840685.1|	-	9.6e-05	21.4	0.0	0.00014	20.9	0.0	1.2	1	0	0	1	1	1	1	Uroporphyrinogen	decarboxylase	(URO-D)
NDK	PF00334.14	gi|385804286|ref|YP_005840686.1|	-	4.2e-54	182.0	0.0	4.7e-54	181.8	0.0	1.0	1	0	0	1	1	1	1	Nucleoside	diphosphate	kinase
Ribosomal_L24e	PF01246.15	gi|385804287|ref|YP_005840687.1|	-	6e-23	80.4	0.0	6.5e-23	80.3	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L24e
Ribosomal_S28e	PF01200.13	gi|385804288|ref|YP_005840688.1|	-	7.8e-28	96.0	0.9	8.1e-28	95.9	0.6	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S28e
Ribosomal_L7Ae	PF01248.21	gi|385804289|ref|YP_005840689.1|	-	9.2e-24	82.7	0.0	1.1e-23	82.5	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
PELOTA_1	PF15608.1	gi|385804289|ref|YP_005840689.1|	-	0.0001	22.0	0.0	0.00014	21.5	0.0	1.2	1	0	0	1	1	1	1	PELOTA	RNA	binding	domain
eRF1_3	PF03465.10	gi|385804289|ref|YP_005840689.1|	-	0.0017	18.5	0.1	0.0035	17.5	0.1	1.5	1	1	0	1	1	1	1	eRF1	domain	3
DUF1269	PF06897.7	gi|385804289|ref|YP_005840689.1|	-	0.24	11.4	2.7	1.9	8.5	0.0	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1269)
DUF456	PF04306.8	gi|385804290|ref|YP_005840690.1|	-	1e-24	87.1	26.6	1e-24	87.1	18.4	1.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF456)
PsbM	PF05151.7	gi|385804290|ref|YP_005840690.1|	-	0.14	11.7	9.6	1.7	8.3	0.5	3.2	3	0	0	3	3	3	0	Photosystem	II	reaction	centre	M	protein	(PsbM)
Cyclase	PF04199.8	gi|385804291|ref|YP_005840691.1|	-	1.5e-23	83.3	1.2	2.1e-23	82.8	0.9	1.2	1	0	0	1	1	1	1	Putative	cyclase
tRNA-synt_1c	PF00749.16	gi|385804292|ref|YP_005840692.1|	-	3.1e-55	187.0	0.0	4e-55	186.6	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
tRNA-synt_1c_C	PF03950.13	gi|385804292|ref|YP_005840692.1|	-	9.9e-20	70.9	0.0	2e-19	69.9	0.0	1.5	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	anti-codon	binding	domain
polyprenyl_synt	PF00348.12	gi|385804293|ref|YP_005840693.1|	-	2.2e-58	197.1	1.6	3e-58	196.7	1.1	1.1	1	0	0	1	1	1	1	Polyprenyl	synthetase
NTPase_1	PF03266.10	gi|385804293|ref|YP_005840693.1|	-	0.11	12.1	0.0	0.2	11.3	0.0	1.4	1	0	0	1	1	1	0	NTPase
Lactamase_B	PF00753.22	gi|385804294|ref|YP_005840694.1|	-	4.9e-11	42.6	5.5	2.3e-10	40.4	3.8	2.2	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|385804294|ref|YP_005840694.1|	-	3.1e-06	26.8	2.1	5.9e-06	25.9	0.3	2.0	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
RMMBL	PF07521.7	gi|385804294|ref|YP_005840694.1|	-	0.0014	18.3	3.3	0.0016	18.1	0.4	2.4	3	0	0	3	3	3	1	RNA-metabolising	metallo-beta-lactamase
PDEase_II	PF02112.10	gi|385804294|ref|YP_005840694.1|	-	0.087	11.7	0.1	0.14	11.0	0.1	1.2	1	0	0	1	1	1	0	cAMP	phosphodiesterases	class-II
LSM	PF01423.17	gi|385804295|ref|YP_005840695.1|	-	7.5e-14	51.0	0.0	1.1e-13	50.5	0.0	1.3	1	1	0	1	1	1	1	LSM	domain
SM-ATX	PF14438.1	gi|385804295|ref|YP_005840695.1|	-	1.9e-05	24.4	0.0	2.7e-05	24.0	0.0	1.2	1	0	0	1	1	1	1	Ataxin	2	SM	domain
DUF4440	PF14534.1	gi|385804295|ref|YP_005840695.1|	-	0.017	15.3	0.1	0.019	15.1	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4440)
Ribosomal_L37e	PF01907.14	gi|385804296|ref|YP_005840696.1|	-	7.8e-25	86.4	12.7	8.4e-25	86.3	8.8	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L37e
DZR	PF12773.2	gi|385804296|ref|YP_005840696.1|	-	0.00051	19.7	2.6	0.00059	19.5	1.8	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|385804296|ref|YP_005840696.1|	-	0.029	13.5	4.8	0.13	11.5	3.3	1.9	1	1	2	3	3	3	0	zinc-ribbon	domain
Ribosomal_L32p	PF01783.18	gi|385804296|ref|YP_005840696.1|	-	0.04	14.1	3.2	0.055	13.6	2.2	1.3	1	0	0	1	1	1	0	Ribosomal	L32p	protein	family
DUF2616	PF11077.3	gi|385804296|ref|YP_005840696.1|	-	0.043	13.3	0.2	0.045	13.2	0.2	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2616)
HypA	PF01155.14	gi|385804296|ref|YP_005840696.1|	-	0.057	13.0	2.0	0.065	12.9	1.4	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
FYVE_2	PF02318.11	gi|385804296|ref|YP_005840696.1|	-	0.081	12.8	2.6	0.088	12.7	1.8	1.0	1	0	0	1	1	1	0	FYVE-type	zinc	finger
zinc_ribbon_6	PF14599.1	gi|385804296|ref|YP_005840696.1|	-	0.13	12.1	1.8	0.16	11.7	1.2	1.2	1	0	0	1	1	1	0	Zinc-ribbon
Zn_Tnp_IS91	PF14319.1	gi|385804296|ref|YP_005840696.1|	-	0.17	11.3	3.0	0.19	11.2	2.1	1.1	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
Baculo_ME53	PF06061.6	gi|385804296|ref|YP_005840696.1|	-	0.19	10.6	3.2	0.21	10.5	2.2	1.0	1	0	0	1	1	1	0	Baculoviridae	ME53
zf-piccolo	PF05715.8	gi|385804296|ref|YP_005840696.1|	-	0.43	10.6	5.1	5.5	7.0	3.5	2.0	1	1	0	1	1	1	0	Piccolo	Zn-finger
zinc_ribbon_2	PF13240.1	gi|385804296|ref|YP_005840696.1|	-	0.66	9.5	6.1	3.5	7.2	4.3	1.9	1	1	1	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|385804296|ref|YP_005840696.1|	-	1	9.0	8.0	0.82	9.3	5.0	1.4	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-C2H2_3	PF13878.1	gi|385804296|ref|YP_005840696.1|	-	1.2	8.7	8.7	5	6.7	0.9	2.2	1	1	1	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
RNA_POL_M_15KD	PF02150.11	gi|385804296|ref|YP_005840696.1|	-	1.2	8.8	5.7	3.8	7.2	0.3	2.2	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
GATase_7	PF13537.1	gi|385804297|ref|YP_005840697.1|	-	2.9e-23	81.9	0.0	1.2e-22	80.0	0.0	2.0	2	0	0	2	2	2	1	Glutamine	amidotransferase	domain
GATase_6	PF13522.1	gi|385804297|ref|YP_005840697.1|	-	7.5e-23	80.9	0.2	2.1e-22	79.5	0.0	1.8	2	0	0	2	2	2	1	Glutamine	amidotransferase	domain
GATase_2	PF00310.16	gi|385804297|ref|YP_005840697.1|	-	1e-20	73.7	0.0	3.6e-15	55.5	0.0	3.2	1	1	1	2	2	2	2	Glutamine	amidotransferases	class-II
Pribosyltran	PF00156.22	gi|385804297|ref|YP_005840697.1|	-	4.7e-12	45.7	0.1	1.4e-11	44.2	0.1	1.7	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
GATase_4	PF13230.1	gi|385804297|ref|YP_005840697.1|	-	0.0048	15.6	0.0	0.0081	14.8	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
DUF655	PF04919.7	gi|385804298|ref|YP_005840698.1|	-	5e-62	208.8	0.1	5.8e-62	208.6	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF655)
HHH_3	PF12836.2	gi|385804298|ref|YP_005840698.1|	-	1.2e-05	25.1	0.0	2.6e-05	24.0	0.0	1.5	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_6	PF14579.1	gi|385804298|ref|YP_005840698.1|	-	0.0051	16.8	0.0	0.014	15.4	0.0	1.9	1	1	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.1	gi|385804298|ref|YP_005840698.1|	-	0.043	13.9	0.0	0.12	12.5	0.0	1.7	1	1	0	1	1	1	0	Helix-hairpin-helix	domain
RNA_pol_Rpb4	PF03874.11	gi|385804299|ref|YP_005840699.1|	-	7.3e-15	55.0	0.6	8.3e-15	54.8	0.4	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb4
VIT1	PF01988.14	gi|385804299|ref|YP_005840699.1|	-	0.19	11.2	0.2	0.21	11.0	0.1	1.2	1	0	0	1	1	1	0	VIT	family
Ribosomal_L21e	PF01157.13	gi|385804300|ref|YP_005840700.1|	-	2.2e-31	107.5	0.1	2.4e-31	107.4	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L21e
YiaAB	PF05360.9	gi|385804301|ref|YP_005840701.1|	-	1.3	8.6	7.2	1.8	8.1	5.0	1.2	1	0	0	1	1	1	0	yiaA/B	two	helix	domain
EF1_GNE	PF00736.14	gi|385804302|ref|YP_005840702.1|	-	1.4e-21	75.9	0.1	1.5e-21	75.8	0.1	1.0	1	0	0	1	1	1	1	EF-1	guanine	nucleotide	exchange	domain
DUF3073	PF11273.3	gi|385804302|ref|YP_005840702.1|	-	0.061	13.8	0.0	0.079	13.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3073)
DUF1610	PF07754.6	gi|385804303|ref|YP_005840703.1|	-	2e-08	34.1	18.5	7.6e-05	22.7	3.7	2.3	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF1610)
DZR	PF12773.2	gi|385804303|ref|YP_005840703.1|	-	0.025	14.3	14.7	7.7	6.4	10.2	2.3	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-UBP	PF02148.14	gi|385804303|ref|YP_005840703.1|	-	0.09	12.8	1.3	0.09	12.8	0.9	2.4	2	1	0	2	2	2	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
OrfB_Zn_ribbon	PF07282.6	gi|385804303|ref|YP_005840703.1|	-	0.092	12.4	12.5	0.31	10.7	1.8	2.2	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
zf-Mss51	PF13824.1	gi|385804303|ref|YP_005840703.1|	-	0.14	12.0	15.6	1.9	8.3	3.0	3.0	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DUF2039	PF10217.4	gi|385804303|ref|YP_005840703.1|	-	0.22	11.5	8.0	0.35	10.9	5.5	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2039)
NMDAR2_C	PF10565.4	gi|385804303|ref|YP_005840703.1|	-	0.37	9.4	9.0	0.4	9.3	6.2	1.0	1	0	0	1	1	1	0	N-methyl	D-aspartate	receptor	2B3	C-terminus
DUF2387	PF09526.5	gi|385804303|ref|YP_005840703.1|	-	0.69	9.8	0.2	0.69	9.8	0.1	2.4	1	1	1	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
PolC_DP2	PF03833.8	gi|385804303|ref|YP_005840703.1|	-	0.87	7.1	7.8	0.89	7.1	5.4	1.1	1	0	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
C1_3	PF07649.7	gi|385804303|ref|YP_005840703.1|	-	0.94	9.5	14.2	0.24	11.4	1.9	2.4	2	1	0	2	2	2	0	C1-like	domain
zf-tcix	PF14952.1	gi|385804303|ref|YP_005840703.1|	-	0.96	8.8	0.0	0.96	8.8	0.0	3.7	2	1	1	3	3	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-RING_5	PF14634.1	gi|385804303|ref|YP_005840703.1|	-	1.3	8.8	12.9	3.6	7.3	1.4	2.3	1	1	1	2	2	2	0	zinc-RING	finger	domain
zinc_ribbon_2	PF13240.1	gi|385804303|ref|YP_005840703.1|	-	1.4	8.5	17.9	13	5.4	0.3	3.9	3	1	1	4	4	4	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|385804303|ref|YP_005840703.1|	-	1.4	8.7	20.3	1.2	9.0	9.4	2.9	1	1	0	2	2	2	0	Transposase	zinc-ribbon	domain
FYVE_2	PF02318.11	gi|385804303|ref|YP_005840703.1|	-	3	7.7	9.2	3.3	7.6	6.4	1.0	1	0	0	1	1	1	0	FYVE-type	zinc	finger
C1_1	PF00130.17	gi|385804303|ref|YP_005840703.1|	-	3	7.6	12.1	1.8	8.3	1.3	2.2	1	1	1	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-H2C2_2	PF13465.1	gi|385804303|ref|YP_005840703.1|	-	3.2	8.2	14.1	12	6.4	2.7	3.8	3	1	1	4	4	4	0	Zinc-finger	double	domain
DNA_RNApol_7kD	PF03604.8	gi|385804303|ref|YP_005840703.1|	-	3.5	7.1	17.6	7.8	6.0	3.9	3.5	2	2	1	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Zn_Tnp_IS91	PF14319.1	gi|385804303|ref|YP_005840703.1|	-	3.5	7.1	11.9	4.7	6.7	8.2	1.2	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
IBR	PF01485.16	gi|385804303|ref|YP_005840703.1|	-	5.9	6.8	14.3	1e+02	2.8	10.5	2.1	1	1	1	2	2	2	0	IBR	domain
RNHCP	PF12647.2	gi|385804303|ref|YP_005840703.1|	-	9	6.2	12.7	7.5	6.4	1.4	2.2	1	1	1	2	2	2	0	RNHCP	domain
TctA	PF01970.11	gi|385804304|ref|YP_005840704.1|	-	4e-60	203.3	43.4	5.5e-60	202.9	30.1	1.2	1	0	0	1	1	1	1	Tripartite	tricarboxylate	transporter	TctA	family
Ribosomal_60s	PF00428.14	gi|385804305|ref|YP_005840705.1|	-	2.8e-11	43.6	34.3	1.2e-10	41.5	23.8	1.8	1	1	0	1	1	1	1	60s	Acidic	ribosomal	protein
TFIID_30kDa	PF03540.8	gi|385804305|ref|YP_005840705.1|	-	0.085	12.7	0.0	0.13	12.0	0.0	1.3	1	0	0	1	1	1	0	Transcription	initiation	factor	TFIID	23-30kDa	subunit
RRN3	PF05327.6	gi|385804305|ref|YP_005840705.1|	-	0.18	9.8	4.8	0.24	9.4	3.3	1.2	1	0	0	1	1	1	0	RNA	polymerase	I	specific	transcription	initiation	factor	RRN3
Penicil_amidase	PF01804.13	gi|385804305|ref|YP_005840705.1|	-	0.42	9.6	2.6	0.45	9.4	1.8	1.0	1	0	0	1	1	1	0	Penicillin	amidase
NOA36	PF06524.7	gi|385804305|ref|YP_005840705.1|	-	0.45	9.7	6.9	0.49	9.5	4.8	1.1	1	0	0	1	1	1	0	NOA36	protein
DUF1510	PF07423.6	gi|385804305|ref|YP_005840705.1|	-	0.66	9.3	5.5	0.67	9.2	3.8	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1510)
RR_TM4-6	PF06459.7	gi|385804305|ref|YP_005840705.1|	-	1.1	9.0	6.5	1.3	8.8	4.5	1.0	1	0	0	1	1	1	0	Ryanodine	Receptor	TM	4-6
BSP_II	PF05432.6	gi|385804305|ref|YP_005840705.1|	-	1.2	8.3	14.7	1.4	8.1	10.2	1.2	1	0	0	1	1	1	0	Bone	sialoprotein	II	(BSP-II)
Cwf_Cwc_15	PF04889.7	gi|385804305|ref|YP_005840705.1|	-	1.7	8.2	8.8	1.9	8.1	6.1	1.1	1	0	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
CDC45	PF02724.9	gi|385804305|ref|YP_005840705.1|	-	2.7	5.8	6.4	2.9	5.8	4.4	1.1	1	0	0	1	1	1	0	CDC45-like	protein
RNA_pol_3_Rpc31	PF11705.3	gi|385804305|ref|YP_005840705.1|	-	3.3	7.5	12.1	3.4	7.5	8.4	1.2	1	0	0	1	1	1	0	DNA-directed	RNA	polymerase	III	subunit	Rpc31
Daxx	PF03344.10	gi|385804305|ref|YP_005840705.1|	-	3.6	5.9	12.7	4.1	5.7	8.8	1.1	1	0	0	1	1	1	0	Daxx	Family
CENP-T	PF15511.1	gi|385804305|ref|YP_005840705.1|	-	3.9	6.6	11.1	4.5	6.4	7.7	1.0	1	0	0	1	1	1	0	Centromere	kinetochore	component	CENP-T
Myc_N	PF01056.13	gi|385804305|ref|YP_005840705.1|	-	4.9	6.2	8.6	5.1	6.1	5.9	1.2	1	0	0	1	1	1	0	Myc	amino-terminal	region
Sigma70_ner	PF04546.8	gi|385804305|ref|YP_005840705.1|	-	5.6	6.5	15.6	7.7	6.0	10.8	1.2	1	0	0	1	1	1	0	Sigma-70,	non-essential	region
Exonuc_VIII	PF06630.6	gi|385804305|ref|YP_005840705.1|	-	6.7	5.9	9.2	3.8	6.8	5.0	1.5	1	1	1	2	2	2	0	Enterobacterial	exodeoxyribonuclease	VIII
VID27	PF08553.5	gi|385804305|ref|YP_005840705.1|	-	6.8	4.7	6.6	7.1	4.7	4.6	1.1	1	0	0	1	1	1	0	VID27	cytoplasmic	protein
DUF2457	PF10446.4	gi|385804305|ref|YP_005840705.1|	-	9	4.8	16.3	11	4.6	11.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2457)
Ribosomal_L10	PF00466.15	gi|385804306|ref|YP_005840706.1|	-	8.4e-21	73.7	0.0	1.3e-20	73.1	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L10
Sporozoite_P67	PF05642.6	gi|385804306|ref|YP_005840706.1|	-	0.23	9.3	7.4	0.34	8.7	5.2	1.2	1	0	0	1	1	1	0	Sporozoite	P67	surface	antigen
CobT	PF06213.7	gi|385804306|ref|YP_005840706.1|	-	0.93	8.5	15.3	1.6	7.7	10.6	1.4	1	0	0	1	1	1	0	Cobalamin	biosynthesis	protein	CobT
Ribosomal_L1	PF00687.16	gi|385804307|ref|YP_005840707.1|	-	8.3e-44	149.5	0.0	9.8e-44	149.3	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L1p/L10e	family
UvrB	PF12344.3	gi|385804307|ref|YP_005840707.1|	-	0.059	12.9	0.3	0.13	11.8	0.2	1.5	1	0	0	1	1	1	0	Ultra-violet	resistance	protein	B
RPAP3_C	PF13877.1	gi|385804308|ref|YP_005840708.1|	-	0.038	13.9	0.0	0.043	13.7	0.0	1.1	1	0	0	1	1	1	0	Potential	Monad-binding	region	of	RPAP3
BPL_LplA_LipB	PF03099.14	gi|385804309|ref|YP_005840709.1|	-	6.3e-22	77.9	0.0	1.1e-21	77.1	0.0	1.4	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
HTH_11	PF08279.7	gi|385804309|ref|YP_005840709.1|	-	1.4e-13	50.2	0.0	2.8e-13	49.2	0.0	1.6	1	0	0	1	1	1	1	HTH	domain
BPL_C	PF02237.12	gi|385804309|ref|YP_005840709.1|	-	9.5e-13	47.6	0.1	1.7e-12	46.8	0.0	1.4	1	0	0	1	1	1	1	Biotin	protein	ligase	C	terminal	domain
HTH_24	PF13412.1	gi|385804309|ref|YP_005840709.1|	-	9.5e-05	21.7	0.0	0.00021	20.5	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|385804309|ref|YP_005840709.1|	-	0.00044	20.0	0.1	0.0012	18.5	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|385804309|ref|YP_005840709.1|	-	0.008	15.8	0.0	0.014	15.0	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_36	PF13730.1	gi|385804309|ref|YP_005840709.1|	-	0.1	12.7	0.0	0.23	11.6	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|385804309|ref|YP_005840709.1|	-	0.11	12.0	0.1	0.26	10.8	0.1	1.6	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
CPSase_L_D2	PF02786.12	gi|385804310|ref|YP_005840710.1|	-	3.8e-74	248.5	0.1	6.5e-74	247.7	0.1	1.4	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
CPSase_L_chain	PF00289.17	gi|385804310|ref|YP_005840710.1|	-	1.9e-41	140.5	1.6	7.5e-41	138.6	0.2	2.6	3	0	0	3	3	3	1	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
Biotin_carb_C	PF02785.14	gi|385804310|ref|YP_005840710.1|	-	7.1e-36	122.4	0.0	1.8e-35	121.1	0.0	1.7	1	0	0	1	1	1	1	Biotin	carboxylase	C-terminal	domain
Biotin_lipoyl	PF00364.17	gi|385804310|ref|YP_005840710.1|	-	1.7e-17	62.8	4.6	2.2e-17	62.4	1.8	2.3	2	0	0	2	2	2	1	Biotin-requiring	enzyme
ATP-grasp_4	PF13535.1	gi|385804310|ref|YP_005840710.1|	-	2.2e-17	63.4	0.2	5.4e-17	62.1	0.1	1.6	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|385804310|ref|YP_005840710.1|	-	2.3e-13	49.5	0.0	9.8e-13	47.5	0.0	1.8	1	1	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
Dala_Dala_lig_C	PF07478.8	gi|385804310|ref|YP_005840710.1|	-	5.9e-09	35.6	0.0	1.2e-08	34.5	0.0	1.4	1	0	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
ATP-grasp	PF02222.17	gi|385804310|ref|YP_005840710.1|	-	2.9e-08	33.2	0.3	9.8e-08	31.5	0.1	2.0	3	0	0	3	3	3	1	ATP-grasp	domain
Biotin_lipoyl_2	PF13533.1	gi|385804310|ref|YP_005840710.1|	-	3.5e-06	26.5	3.1	0.072	12.7	0.0	3.6	3	1	1	4	4	4	2	Biotin-lipoyl	like
RimK	PF08443.6	gi|385804310|ref|YP_005840710.1|	-	0.00015	21.2	0.0	0.0024	17.3	0.0	2.2	1	1	0	1	1	1	1	RimK-like	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|385804310|ref|YP_005840710.1|	-	0.0012	18.6	0.0	0.0029	17.4	0.0	1.7	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_5	PF13549.1	gi|385804310|ref|YP_005840710.1|	-	0.0099	15.1	0.0	0.019	14.1	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
Peptidase_M23	PF01551.17	gi|385804310|ref|YP_005840710.1|	-	0.016	15.2	0.1	1.9	8.5	0.0	2.9	2	0	0	2	2	2	0	Peptidase	family	M23
GARS_A	PF01071.14	gi|385804310|ref|YP_005840710.1|	-	0.02	14.4	0.0	0.041	13.4	0.0	1.5	1	0	0	1	1	1	0	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
GCV_H	PF01597.14	gi|385804310|ref|YP_005840710.1|	-	0.088	12.4	0.3	0.24	11.1	0.2	1.7	1	0	0	1	1	1	0	Glycine	cleavage	H-protein
Semialdhyde_dh	PF01118.19	gi|385804311|ref|YP_005840711.1|	-	9.6e-31	106.6	0.0	2.3e-30	105.3	0.0	1.6	2	0	0	2	2	2	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.13	gi|385804311|ref|YP_005840711.1|	-	6.4e-30	104.3	0.0	9e-30	103.8	0.0	1.2	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
DapB_N	PF01113.15	gi|385804311|ref|YP_005840711.1|	-	3.3e-05	23.7	0.0	9.9e-05	22.2	0.0	1.9	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
DXP_reductoisom	PF02670.11	gi|385804311|ref|YP_005840711.1|	-	0.00031	21.2	0.0	0.00067	20.1	0.0	1.5	1	0	0	1	1	1	1	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
GFO_IDH_MocA	PF01408.17	gi|385804311|ref|YP_005840711.1|	-	0.0096	16.4	0.0	0.019	15.5	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
NAD_binding_10	PF13460.1	gi|385804311|ref|YP_005840711.1|	-	0.094	12.7	0.0	0.17	11.8	0.0	1.4	1	0	0	1	1	1	0	NADH(P)-binding
DUF3387	PF11867.3	gi|385804312|ref|YP_005840712.1|	-	3.6e-84	282.5	14.0	7e-84	281.6	9.7	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3387)
ResIII	PF04851.10	gi|385804312|ref|YP_005840712.1|	-	3.1e-16	59.7	0.0	3.1e-16	59.7	0.0	2.5	3	0	0	3	3	3	1	Type	III	restriction	enzyme,	res	subunit
Biotin_carb_C	PF02785.14	gi|385804312|ref|YP_005840712.1|	-	0.018	14.9	0.1	4.8	7.2	0.0	3.6	3	0	0	3	3	3	0	Biotin	carboxylase	C-terminal	domain
AAA_22	PF13401.1	gi|385804312|ref|YP_005840712.1|	-	0.026	14.6	0.1	0.5	10.5	0.0	2.8	2	0	0	2	2	2	0	AAA	domain
Lipase_GDSL	PF00657.17	gi|385804312|ref|YP_005840712.1|	-	0.15	11.8	0.6	0.56	9.9	0.5	1.9	2	0	0	2	2	2	0	GDSL-like	Lipase/Acylhydrolase
DUF4411	PF14367.1	gi|385804312|ref|YP_005840712.1|	-	2.3	7.9	9.6	0.15	11.7	1.6	2.6	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4411)
DUF433	PF04255.9	gi|385804314|ref|YP_005840714.1|	-	6.7e-06	25.4	0.7	7.2e-05	22.1	0.1	2.0	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF433)
DUF4296	PF14129.1	gi|385804314|ref|YP_005840714.1|	-	0.00028	20.9	0.1	0.00035	20.6	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4296)
Glyco_trans_1_2	PF13524.1	gi|385804314|ref|YP_005840714.1|	-	0.024	14.9	0.4	0.032	14.4	0.3	1.3	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
2-Hacid_dh_C	PF02826.14	gi|385804316|ref|YP_005840716.1|	-	8.8e-50	168.3	0.0	1.4e-49	167.6	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.25	gi|385804316|ref|YP_005840716.1|	-	2e-07	30.5	0.0	2.5e-07	30.2	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
F420_oxidored	PF03807.12	gi|385804316|ref|YP_005840716.1|	-	0.013	15.9	0.0	0.028	14.8	0.0	1.6	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
DAO	PF01266.19	gi|385804317|ref|YP_005840717.1|	-	3.7e-10	39.2	8.2	5e-05	22.3	0.6	2.3	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|385804317|ref|YP_005840717.1|	-	8.6e-05	21.1	0.5	0.00062	18.3	0.4	2.2	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox_2	PF07992.9	gi|385804317|ref|YP_005840717.1|	-	0.00057	19.8	4.0	0.003	17.4	2.8	2.2	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|385804317|ref|YP_005840717.1|	-	0.00072	18.7	3.6	0.0053	15.8	2.5	2.1	1	1	0	1	1	1	1	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|385804317|ref|YP_005840717.1|	-	0.001	18.2	11.5	0.0036	16.4	7.0	2.2	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
GIDA	PF01134.17	gi|385804317|ref|YP_005840717.1|	-	0.0044	15.9	2.9	0.0076	15.1	1.1	1.8	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.19	gi|385804317|ref|YP_005840717.1|	-	0.008	15.0	5.2	0.008	15.0	3.6	2.2	3	0	0	3	3	3	1	FAD	binding	domain
Thi4	PF01946.12	gi|385804317|ref|YP_005840717.1|	-	0.0086	15.2	0.4	0.031	13.3	0.1	1.9	2	0	0	2	2	2	1	Thi4	family
NAD_binding_8	PF13450.1	gi|385804317|ref|YP_005840717.1|	-	0.018	15.0	0.4	0.018	15.0	0.3	2.5	3	0	0	3	3	3	0	NAD(P)-binding	Rossmann-like	domain
Lycopene_cycl	PF05834.7	gi|385804317|ref|YP_005840717.1|	-	0.067	12.0	4.6	1.3	7.8	0.8	2.4	2	1	1	3	3	3	0	Lycopene	cyclase	protein
Pyr_redox	PF00070.22	gi|385804317|ref|YP_005840717.1|	-	0.079	13.3	1.6	8.3	6.9	0.8	2.7	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|385804317|ref|YP_005840717.1|	-	0.11	12.2	6.8	0.38	10.5	0.3	2.9	2	1	0	2	2	2	0	FAD-NAD(P)-binding
Trp_halogenase	PF04820.9	gi|385804317|ref|YP_005840717.1|	-	0.17	10.4	6.5	0.25	9.9	0.1	2.5	2	1	0	2	2	2	0	Tryptophan	halogenase
FAD_binding_3	PF01494.14	gi|385804318|ref|YP_005840718.1|	-	0.0027	16.8	0.0	0.11	11.5	0.0	2.2	2	0	0	2	2	2	2	FAD	binding	domain
Pyr_redox	PF00070.22	gi|385804318|ref|YP_005840718.1|	-	0.11	12.8	0.0	14	6.1	0.0	2.4	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
IncA	PF04156.9	gi|385804319|ref|YP_005840719.1|	-	0.4	10.2	0.0	0.4	10.2	0.0	2.3	3	0	0	3	3	3	0	IncA	protein
Mut7-C	PF01927.11	gi|385804320|ref|YP_005840720.1|	-	0.094	12.6	0.0	0.11	12.4	0.0	1.2	1	0	0	1	1	1	0	Mut7-C	RNAse	domain
DUF433	PF04255.9	gi|385804321|ref|YP_005840721.1|	-	1e-17	63.2	0.1	1.6e-17	62.6	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF433)
HTH_28	PF13518.1	gi|385804323|ref|YP_005840723.1|	-	0.025	14.6	0.0	0.85	9.6	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_20	PF12840.2	gi|385804323|ref|YP_005840723.1|	-	0.069	12.9	0.1	0.13	12.1	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
PIN	PF01850.16	gi|385804324|ref|YP_005840724.1|	-	6.2e-12	45.9	0.1	7.6e-12	45.6	0.1	1.0	1	0	0	1	1	1	1	PIN	domain
DUF3072	PF11272.3	gi|385804324|ref|YP_005840724.1|	-	0.068	12.8	0.0	0.12	12.0	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3072)
Antitoxin-MazE	PF04014.13	gi|385804325|ref|YP_005840725.1|	-	0.0025	17.5	0.0	0.0033	17.0	0.0	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
SusE	PF14292.1	gi|385804326|ref|YP_005840726.1|	-	0.42	10.4	3.9	0.3	10.9	0.7	2.0	1	1	0	2	2	2	0	SusE	outer	membrane	protein
TrmB	PF01978.14	gi|385804328|ref|YP_005840728.1|	-	0.0042	16.7	0.1	0.0065	16.1	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.1	gi|385804328|ref|YP_005840728.1|	-	0.012	15.9	0.0	0.026	14.8	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Gam	PF06064.6	gi|385804328|ref|YP_005840728.1|	-	0.071	13.2	0.0	0.27	11.3	0.0	1.9	1	1	1	2	2	2	0	Host-nuclease	inhibitor	protein	Gam
4HB_MCP_1	PF12729.2	gi|385804328|ref|YP_005840728.1|	-	0.094	12.0	0.3	0.16	11.2	0.2	1.3	1	0	0	1	1	1	0	Four	helix	bundle	sensory	module	for	signal	transduction
Cdc6_C	PF09079.6	gi|385804328|ref|YP_005840728.1|	-	0.1	12.3	0.2	0.28	10.9	0.0	1.8	2	0	0	2	2	2	0	CDC6,	C	terminal
DinB	PF05163.7	gi|385804328|ref|YP_005840728.1|	-	0.38	10.4	2.9	11	5.7	0.0	2.1	1	1	1	2	2	2	0	DinB	family
Aminotran_5	PF00266.14	gi|385804330|ref|YP_005840730.1|	-	4.3e-28	98.1	0.0	5.4e-28	97.7	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
DUF1623	PF07785.6	gi|385804330|ref|YP_005840730.1|	-	0.13	12.2	1.2	1.3	8.9	0.1	3.0	4	1	0	4	4	4	0	Protein	of	unknown	function	(DUF1623)
SelR	PF01641.13	gi|385804331|ref|YP_005840731.1|	-	9.4e-45	151.3	0.0	1.1e-44	151.0	0.0	1.1	1	0	0	1	1	1	1	SelR	domain
Yippee-Mis18	PF03226.9	gi|385804331|ref|YP_005840731.1|	-	0.0049	16.8	0.0	0.017	15.1	0.0	1.8	1	1	0	1	1	1	1	Yippee	zinc-binding/DNA-binding	/Mis18,	centromere	assembly
DUF2296	PF10058.4	gi|385804331|ref|YP_005840731.1|	-	0.028	14.1	0.1	1.1	9.0	0.0	2.2	2	0	0	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
Zn_Tnp_IS1595	PF12760.2	gi|385804331|ref|YP_005840731.1|	-	0.12	12.1	1.2	13	5.6	0.0	2.3	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|385804331|ref|YP_005840731.1|	-	0.77	9.1	5.5	22	4.4	0.2	3.5	3	0	0	3	3	3	0	TFIIB	zinc-binding
Ribosomal_L11	PF00298.14	gi|385804332|ref|YP_005840732.1|	-	1.7e-19	69.7	0.0	2.3e-19	69.2	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11,	RNA	binding	domain
Ribosomal_L11_N	PF03946.9	gi|385804332|ref|YP_005840732.1|	-	2.2e-18	65.4	0.1	3.4e-18	64.8	0.1	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L11,	N-terminal	domain
Peptidase_M42	PF05343.9	gi|385804333|ref|YP_005840733.1|	-	2.1e-76	256.4	1.8	2.4e-76	256.2	1.2	1.0	1	0	0	1	1	1	1	M42	glutamyl	aminopeptidase
Peptidase_M20	PF01546.23	gi|385804333|ref|YP_005840733.1|	-	7.2e-12	45.2	0.1	1.2e-11	44.5	0.1	1.3	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
Peptidase_M18	PF02127.10	gi|385804333|ref|YP_005840733.1|	-	3.5e-09	35.6	0.0	0.00064	18.3	0.1	3.0	3	0	0	3	3	3	3	Aminopeptidase	I	zinc	metalloprotease	(M18)
Peptidase_M28	PF04389.12	gi|385804333|ref|YP_005840733.1|	-	5.5e-05	22.9	0.2	0.00013	21.7	0.1	1.6	1	0	0	1	1	1	1	Peptidase	family	M28
GHMP_kinases_N	PF00288.21	gi|385804335|ref|YP_005840735.1|	-	1.3e-15	57.1	0.1	2.8e-15	56.1	0.1	1.6	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|385804335|ref|YP_005840735.1|	-	4.5e-13	49.2	0.3	4.2e-12	46.0	0.0	2.4	2	0	0	2	2	2	1	GHMP	kinases	C	terminal
GalKase_gal_bdg	PF10509.4	gi|385804335|ref|YP_005840735.1|	-	0.00013	21.2	0.0	0.00026	20.1	0.0	1.6	1	0	0	1	1	1	1	Galactokinase	galactose-binding	signature
AA_kinase	PF00696.23	gi|385804336|ref|YP_005840736.1|	-	3.1e-34	118.5	1.4	3.8e-34	118.3	1.0	1.1	1	0	0	1	1	1	1	Amino	acid	kinase	family
Lactamase_B_2	PF12706.2	gi|385804337|ref|YP_005840737.1|	-	1.6e-21	76.7	0.1	2e-21	76.4	0.1	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|385804337|ref|YP_005840737.1|	-	5e-11	42.6	2.2	3.2e-10	39.9	1.2	2.3	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.1	gi|385804337|ref|YP_005840737.1|	-	0.05	13.3	0.1	0.083	12.5	0.1	1.4	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
DEAD_assoc	PF08494.6	gi|385804338|ref|YP_005840738.1|	-	4.9e-51	173.1	0.6	9.6e-51	172.1	0.4	1.5	1	0	0	1	1	1	1	DEAD/H	associated
DEAD	PF00270.24	gi|385804338|ref|YP_005840738.1|	-	9.1e-29	100.1	0.0	6.5e-14	51.7	0.0	3.3	2	1	0	3	3	3	2	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|385804338|ref|YP_005840738.1|	-	9.8e-16	57.3	0.1	2.1e-14	53.1	0.0	2.5	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|385804338|ref|YP_005840738.1|	-	1.8e-09	37.6	0.0	5.4e-09	36.1	0.0	1.8	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_22	PF13401.1	gi|385804338|ref|YP_005840738.1|	-	0.002	18.2	1.1	0.04	14.0	0.1	3.3	2	2	1	3	3	3	1	AAA	domain
LcrG	PF07216.7	gi|385804338|ref|YP_005840738.1|	-	0.061	13.3	0.0	0.21	11.6	0.0	1.9	1	0	0	1	1	1	0	LcrG	protein
AAA_11	PF13086.1	gi|385804339|ref|YP_005840739.1|	-	4.8e-43	147.4	1.9	4.3e-22	78.8	0.7	2.8	2	1	1	3	3	3	2	AAA	domain
AAA_12	PF13087.1	gi|385804339|ref|YP_005840739.1|	-	1.8e-41	141.7	0.0	2.9e-41	141.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
Dna2	PF08696.6	gi|385804339|ref|YP_005840739.1|	-	2.9e-36	124.7	0.0	8.9e-36	123.1	0.0	1.7	1	1	0	1	1	1	1	DNA	replication	factor	Dna2
AAA_30	PF13604.1	gi|385804339|ref|YP_005840739.1|	-	1.7e-18	66.8	6.9	6.1e-18	65.1	0.4	4.1	4	2	0	4	4	4	1	AAA	domain
AAA_19	PF13245.1	gi|385804339|ref|YP_005840739.1|	-	7.7e-14	51.2	1.7	3.8e-11	42.5	0.3	2.8	2	0	0	2	2	2	1	Part	of	AAA	domain
PDDEXK_1	PF12705.2	gi|385804339|ref|YP_005840739.1|	-	1.9e-11	43.8	0.0	4.4e-11	42.6	0.0	1.6	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
Viral_helicase1	PF01443.13	gi|385804339|ref|YP_005840739.1|	-	1.5e-10	41.0	1.1	0.0002	20.9	0.1	3.3	2	1	1	3	3	3	3	Viral	(Superfamily	1)	RNA	helicase
DUF2075	PF09848.4	gi|385804339|ref|YP_005840739.1|	-	6.8e-06	25.2	0.1	0.00013	21.1	0.0	2.5	3	0	0	3	3	3	1	Uncharacterized	conserved	protein	(DUF2075)
UvrD-helicase	PF00580.16	gi|385804339|ref|YP_005840739.1|	-	2.4e-05	23.7	0.0	3.8e-05	23.1	0.0	1.4	1	0	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
Cas_Cas4	PF01930.12	gi|385804339|ref|YP_005840739.1|	-	3.9e-05	23.6	0.0	0.00064	19.6	0.0	2.4	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF83
AAA_22	PF13401.1	gi|385804339|ref|YP_005840739.1|	-	0.00011	22.2	0.1	0.0068	16.5	0.0	3.2	2	1	0	2	2	2	1	AAA	domain
UvrD_C_2	PF13538.1	gi|385804339|ref|YP_005840739.1|	-	0.00016	21.7	0.0	0.0005	20.1	0.0	1.9	1	0	0	1	1	1	1	UvrD-like	helicase	C-terminal	domain
CbiA	PF01656.18	gi|385804339|ref|YP_005840739.1|	-	0.0011	18.4	1.4	0.0032	16.8	0.9	1.9	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
PIF1	PF05970.9	gi|385804339|ref|YP_005840739.1|	-	0.0015	17.5	0.0	0.17	10.7	0.0	2.2	2	0	0	2	2	2	1	PIF1-like	helicase
ResIII	PF04851.10	gi|385804339|ref|YP_005840739.1|	-	0.0021	17.9	0.0	0.0045	16.8	0.0	1.6	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_25	PF13481.1	gi|385804339|ref|YP_005840739.1|	-	0.0024	17.2	0.0	0.0063	15.9	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
PhoH	PF02562.11	gi|385804339|ref|YP_005840739.1|	-	0.0049	16.1	0.0	0.025	13.7	0.0	2.0	2	0	0	2	2	2	1	PhoH-like	protein
AAA_10	PF12846.2	gi|385804339|ref|YP_005840739.1|	-	0.0072	15.7	0.1	2.1	7.6	0.0	2.6	1	1	0	2	2	2	1	AAA-like	domain
T2SE	PF00437.15	gi|385804339|ref|YP_005840739.1|	-	0.008	15.1	0.0	0.017	14.0	0.0	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_16	PF13191.1	gi|385804339|ref|YP_005840739.1|	-	0.01	15.8	0.4	0.01	15.8	0.3	2.4	2	1	1	3	3	2	0	AAA	ATPase	domain
TrwB_AAD_bind	PF10412.4	gi|385804339|ref|YP_005840739.1|	-	0.01	14.4	0.0	0.017	13.7	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
Helicase_RecD	PF05127.9	gi|385804339|ref|YP_005840739.1|	-	0.012	15.1	0.2	0.064	12.8	0.1	2.3	2	1	0	2	2	1	0	Helicase
AAA	PF00004.24	gi|385804339|ref|YP_005840739.1|	-	0.013	15.7	0.0	0.037	14.2	0.0	1.8	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.7	gi|385804339|ref|YP_005840739.1|	-	0.019	14.0	0.0	0.036	13.1	0.0	1.4	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_5	PF07728.9	gi|385804339|ref|YP_005840739.1|	-	0.023	14.4	0.0	0.11	12.2	0.0	2.1	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_24	PF13479.1	gi|385804339|ref|YP_005840739.1|	-	0.027	14.0	0.3	0.13	11.8	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
Mg_chelatase	PF01078.16	gi|385804339|ref|YP_005840739.1|	-	0.038	13.1	0.0	0.066	12.3	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
SRP54	PF00448.17	gi|385804339|ref|YP_005840739.1|	-	0.049	13.0	0.0	0.13	11.6	0.0	1.7	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
DDE_5	PF13546.1	gi|385804340|ref|YP_005840740.1|	-	5.5e-20	71.3	0.0	8.7e-20	70.6	0.0	1.2	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.16	gi|385804340|ref|YP_005840740.1|	-	2.8e-17	62.9	0.4	5.2e-17	62.0	0.1	1.6	2	1	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.7	gi|385804340|ref|YP_005840740.1|	-	0.00011	21.3	0.5	0.00045	19.3	0.3	1.8	1	1	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1_6	PF13751.1	gi|385804340|ref|YP_005840740.1|	-	0.01	15.8	0.0	0.035	14.1	0.0	1.9	2	0	0	2	2	2	0	Transposase	DDE	domain
Peptidase_M50B	PF13398.1	gi|385804342|ref|YP_005840742.1|	-	0.084	12.2	3.4	0.091	12.1	2.4	1.0	1	0	0	1	1	1	0	Peptidase	M50B-like
ABC_tran	PF00005.22	gi|385804343|ref|YP_005840743.1|	-	2e-32	112.3	0.0	4.1e-32	111.3	0.0	1.6	1	0	0	1	1	1	1	ABC	transporter
AAA_17	PF13207.1	gi|385804343|ref|YP_005840743.1|	-	8e-07	29.9	0.2	4.4e-06	27.5	0.1	2.4	2	1	0	2	2	1	1	AAA	domain
ABC_membrane	PF00664.18	gi|385804343|ref|YP_005840743.1|	-	9.5e-07	28.4	8.3	1.4e-06	27.9	5.8	1.2	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
SMC_N	PF02463.14	gi|385804343|ref|YP_005840743.1|	-	2.2e-06	27.0	2.5	1.1e-05	24.8	0.2	2.0	1	1	1	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
DUF258	PF03193.11	gi|385804343|ref|YP_005840743.1|	-	0.0001	21.5	0.0	0.00019	20.6	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_22	PF13401.1	gi|385804343|ref|YP_005840743.1|	-	0.00048	20.2	0.3	0.0039	17.3	0.2	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|385804343|ref|YP_005840743.1|	-	0.00093	18.6	0.0	0.0018	17.7	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_21	PF13304.1	gi|385804343|ref|YP_005840743.1|	-	0.002	18.1	0.1	0.59	10.0	0.0	2.5	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|385804343|ref|YP_005840743.1|	-	0.0026	18.0	0.0	0.011	16.0	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.1	gi|385804343|ref|YP_005840743.1|	-	0.0039	16.6	0.0	0.011	15.0	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|385804343|ref|YP_005840743.1|	-	0.0065	16.4	0.1	0.015	15.2	0.0	1.6	1	0	0	1	1	1	1	AAA	ATPase	domain
RNA_helicase	PF00910.17	gi|385804343|ref|YP_005840743.1|	-	0.0092	16.1	0.0	0.042	14.0	0.0	2.2	2	0	0	2	2	1	1	RNA	helicase
AAA_5	PF07728.9	gi|385804343|ref|YP_005840743.1|	-	0.019	14.6	0.0	0.063	13.0	0.0	2.0	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
ABC_ATPase	PF09818.4	gi|385804343|ref|YP_005840743.1|	-	0.021	13.4	0.1	0.036	12.6	0.1	1.3	1	0	0	1	1	1	0	Predicted	ATPase	of	the	ABC	class
AAA_30	PF13604.1	gi|385804343|ref|YP_005840743.1|	-	0.024	14.2	0.3	0.18	11.3	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.1	gi|385804343|ref|YP_005840743.1|	-	0.036	13.9	0.0	0.17	11.7	0.0	2.3	1	1	0	1	1	1	0	AAA	domain
DUF87	PF01935.12	gi|385804343|ref|YP_005840743.1|	-	0.062	13.0	0.1	2.2	8.0	0.0	2.6	3	0	0	3	3	3	0	Domain	of	unknown	function	DUF87
Zeta_toxin	PF06414.7	gi|385804343|ref|YP_005840743.1|	-	0.07	12.2	0.1	0.29	10.2	0.0	2.1	2	0	0	2	2	2	0	Zeta	toxin
AAA_23	PF13476.1	gi|385804343|ref|YP_005840743.1|	-	0.079	13.2	1.2	0.13	12.5	0.2	1.9	2	1	0	2	2	2	0	AAA	domain
DBI_PRT	PF02277.12	gi|385804343|ref|YP_005840743.1|	-	0.083	11.9	0.5	0.13	11.3	0.0	1.5	2	0	0	2	2	2	0	Phosphoribosyltransferase
APS_kinase	PF01583.15	gi|385804343|ref|YP_005840743.1|	-	0.1	12.2	0.3	0.32	10.6	0.0	2.0	3	0	0	3	3	2	0	Adenylylsulphate	kinase
DUF2342	PF10103.4	gi|385804344|ref|YP_005840744.1|	-	1e-90	304.1	1.9	1.2e-52	178.9	0.2	2.0	1	1	1	2	2	2	2	Uncharacterised	conserved	protein	(DUF2342)
Peptidase_MA_2	PF13485.1	gi|385804344|ref|YP_005840744.1|	-	0.41	10.6	5.3	0.16	12.0	0.9	2.3	2	1	0	2	2	2	0	Peptidase	MA	superfamily
Ribosomal_S2	PF00318.15	gi|385804345|ref|YP_005840745.1|	-	7.2e-37	126.6	0.0	2.7e-18	65.9	0.1	2.1	1	1	1	2	2	2	2	Ribosomal	protein	S2
Enolase_C	PF00113.17	gi|385804346|ref|YP_005840746.1|	-	1.2e-73	247.6	0.3	1.8e-73	247.1	0.2	1.2	1	0	0	1	1	1	1	Enolase,	C-terminal	TIM	barrel	domain
Enolase_N	PF03952.11	gi|385804346|ref|YP_005840746.1|	-	1.3e-38	131.8	1.0	4e-38	130.3	0.5	2.0	2	0	0	2	2	2	1	Enolase,	N-terminal	domain
MAAL_C	PF07476.6	gi|385804346|ref|YP_005840746.1|	-	2.2e-05	23.5	1.4	5.1e-05	22.3	0.1	2.0	2	0	0	2	2	2	1	Methylaspartate	ammonia-lyase	C-terminus
MR_MLE_C	PF13378.1	gi|385804346|ref|YP_005840746.1|	-	0.0001	22.2	0.4	0.00043	20.2	0.0	2.2	2	0	0	2	2	2	1	Enolase	C-terminal	domain-like
MR_MLE	PF01188.16	gi|385804346|ref|YP_005840746.1|	-	0.00019	21.8	0.0	0.00059	20.3	0.0	1.9	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	C-terminal	domain
RNA_pol_Rpb6	PF01192.17	gi|385804347|ref|YP_005840747.1|	-	8.5e-20	70.2	0.0	9.1e-20	70.1	0.0	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb6
RNA_pol_N	PF01194.12	gi|385804348|ref|YP_005840748.1|	-	2.2e-29	101.2	0.4	2.4e-29	101.1	0.3	1.0	1	0	0	1	1	1	1	RNA	polymerases	N	/	8	kDa	subunit
DUF2655	PF10848.3	gi|385804348|ref|YP_005840748.1|	-	0.11	12.3	0.1	0.14	12.0	0.0	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2655)
Ribosomal_S9	PF00380.14	gi|385804349|ref|YP_005840749.1|	-	4.1e-36	123.8	0.1	4.6e-36	123.7	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S9/S16
Ribosomal_L13	PF00572.13	gi|385804350|ref|YP_005840750.1|	-	5.9e-19	68.3	0.0	7.7e-19	68.0	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L13
Ribosomal_L18e	PF00828.14	gi|385804351|ref|YP_005840751.1|	-	3.3e-13	50.1	0.1	4.3e-13	49.7	0.1	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L18e/L15
RNA_pol_A_bac	PF01000.21	gi|385804352|ref|YP_005840752.1|	-	1.6e-18	66.8	0.0	9.8e-18	64.3	0.0	2.0	1	1	0	1	1	1	1	RNA	polymerase	Rpb3/RpoA	insert	domain
RNA_pol_L	PF01193.19	gi|385804352|ref|YP_005840752.1|	-	4.2e-11	41.8	0.0	5.8e-11	41.3	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
Ribosomal_S11	PF00411.14	gi|385804353|ref|YP_005840753.1|	-	7.1e-44	148.4	0.3	8.2e-44	148.2	0.2	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S11
S4	PF01479.20	gi|385804354|ref|YP_005840754.1|	-	4.9e-16	57.8	0.5	1.3e-14	53.3	0.0	2.3	2	0	0	2	2	2	1	S4	domain
Ribosomal_S4	PF00163.14	gi|385804354|ref|YP_005840754.1|	-	0.00067	19.9	0.8	0.01	16.2	0.6	2.2	1	1	0	1	1	1	1	Ribosomal	protein	S4/S9	N-terminal	domain
S4_2	PF13275.1	gi|385804354|ref|YP_005840754.1|	-	0.038	13.6	0.0	0.064	12.8	0.0	1.4	1	0	0	1	1	1	0	S4	domain
ATP-synt_D	PF01813.12	gi|385804354|ref|YP_005840754.1|	-	0.048	13.2	0.0	0.067	12.7	0.0	1.1	1	0	0	1	1	1	0	ATP	synthase	subunit	D
Ribosomal_S13	PF00416.17	gi|385804355|ref|YP_005840755.1|	-	4.9e-34	116.9	1.8	6.2e-34	116.6	1.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S13/S18
HHH_5	PF14520.1	gi|385804355|ref|YP_005840755.1|	-	0.34	11.1	2.0	0.28	11.3	0.3	2.0	1	1	1	2	2	1	0	Helix-hairpin-helix	domain
STT3	PF02516.9	gi|385804356|ref|YP_005840756.1|	-	3.7e-10	39.3	21.2	3.7e-10	39.3	14.7	2.1	2	1	0	2	2	2	1	Oligosaccharyl	transferase	STT3	subunit
GATase	PF00117.23	gi|385804357|ref|YP_005840757.1|	-	7.1e-21	74.5	0.0	9.8e-21	74.0	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|385804357|ref|YP_005840757.1|	-	0.00014	21.4	0.0	0.025	14.0	0.0	2.3	2	0	0	2	2	2	2	Peptidase	C26
HTS	PF04204.11	gi|385804357|ref|YP_005840757.1|	-	0.00092	18.0	0.0	0.0049	15.6	0.0	1.8	1	1	0	1	1	1	1	Homoserine	O-succinyltransferase
GATase_3	PF07685.9	gi|385804357|ref|YP_005840757.1|	-	0.0019	17.8	0.0	0.0046	16.5	0.0	1.8	1	1	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
DDE_5	PF13546.1	gi|385804358|ref|YP_005840758.1|	-	5.5e-20	71.3	0.0	8.7e-20	70.6	0.0	1.2	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.16	gi|385804358|ref|YP_005840758.1|	-	2.8e-17	62.9	0.4	5.2e-17	62.0	0.1	1.6	2	1	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.7	gi|385804358|ref|YP_005840758.1|	-	0.00011	21.3	0.5	0.00045	19.3	0.3	1.8	1	1	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1_6	PF13751.1	gi|385804358|ref|YP_005840758.1|	-	0.01	15.8	0.0	0.035	14.1	0.0	1.9	2	0	0	2	2	2	0	Transposase	DDE	domain
Mob_synth_C	PF06463.8	gi|385804359|ref|YP_005840759.1|	-	9.3e-34	115.8	0.0	1.4e-33	115.2	0.0	1.3	1	0	0	1	1	1	1	Molybdenum	Cofactor	Synthesis	C
Radical_SAM	PF04055.16	gi|385804359|ref|YP_005840759.1|	-	5.5e-25	88.4	0.1	2.2e-24	86.4	0.0	1.9	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|385804359|ref|YP_005840759.1|	-	4.3e-08	33.2	0.0	1e-07	31.9	0.0	1.6	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|385804359|ref|YP_005840759.1|	-	9.7e-08	32.2	0.0	2.7e-07	30.7	0.0	1.7	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Imm49	PF15660.1	gi|385804359|ref|YP_005840759.1|	-	0.0079	16.2	0.0	0.019	14.9	0.0	1.6	1	0	0	1	1	1	1	Immunity	protein	49
Cytochrome_C7	PF14522.1	gi|385804359|ref|YP_005840759.1|	-	0.061	12.9	0.4	10	5.8	0.0	2.3	2	0	0	2	2	2	0	Cytochrome	c7
ParA	PF10609.4	gi|385804360|ref|YP_005840760.1|	-	4.2e-34	116.2	0.2	8.2e-34	115.3	0.0	1.6	2	0	0	2	2	1	1	ParA/MinD	ATPase	like
CbiA	PF01656.18	gi|385804360|ref|YP_005840760.1|	-	1.7e-19	70.0	0.0	2.6e-19	69.4	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
DUF59	PF01883.14	gi|385804360|ref|YP_005840760.1|	-	2e-10	40.4	0.3	5.7e-10	39.0	0.2	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF59
AAA_31	PF13614.1	gi|385804360|ref|YP_005840760.1|	-	2.4e-08	34.0	0.0	3.3e-06	27.0	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
MipZ	PF09140.6	gi|385804360|ref|YP_005840760.1|	-	5.1e-08	32.3	0.0	8.9e-08	31.5	0.0	1.4	1	0	0	1	1	1	1	ATPase	MipZ
ArsA_ATPase	PF02374.10	gi|385804360|ref|YP_005840760.1|	-	4.4e-05	22.6	1.9	0.00033	19.8	0.2	2.2	2	0	0	2	2	2	1	Anion-transporting	ATPase
VirC1	PF07015.6	gi|385804360|ref|YP_005840760.1|	-	0.00025	20.1	0.0	0.00043	19.4	0.0	1.3	1	0	0	1	1	1	1	VirC1	protein
AAA_26	PF13500.1	gi|385804360|ref|YP_005840760.1|	-	0.0067	16.0	0.1	1	8.9	0.0	2.5	3	0	0	3	3	3	1	AAA	domain
Fer4_NifH	PF00142.13	gi|385804360|ref|YP_005840760.1|	-	0.019	14.1	0.1	0.036	13.2	0.1	1.4	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_25	PF13481.1	gi|385804360|ref|YP_005840760.1|	-	0.032	13.6	0.3	0.051	12.9	0.2	1.5	1	1	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|385804360|ref|YP_005840760.1|	-	0.12	11.5	0.0	0.19	10.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
Polysacc_synt_2	PF02719.10	gi|385804361|ref|YP_005840761.1|	-	3.9e-93	311.5	0.1	4.5e-93	311.3	0.1	1.0	1	0	0	1	1	1	1	Polysaccharide	biosynthesis	protein
Epimerase	PF01370.16	gi|385804361|ref|YP_005840761.1|	-	5.4e-28	98.0	0.1	1.1e-26	93.7	0.0	2.4	2	1	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|385804361|ref|YP_005840761.1|	-	1.6e-26	92.6	0.1	7.4e-25	87.1	0.0	2.1	1	1	1	2	2	2	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.12	gi|385804361|ref|YP_005840761.1|	-	4e-14	52.1	0.0	6.6e-13	48.1	0.0	2.1	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_10	PF13460.1	gi|385804361|ref|YP_005840761.1|	-	2.8e-13	50.2	1.2	3.2e-12	46.8	0.8	2.3	1	1	0	1	1	1	1	NADH(P)-binding
adh_short	PF00106.20	gi|385804361|ref|YP_005840761.1|	-	4.4e-12	46.2	0.1	8e-12	45.3	0.1	1.4	1	0	0	1	1	1	1	short	chain	dehydrogenase
NAD_binding_4	PF07993.7	gi|385804361|ref|YP_005840761.1|	-	1.6e-11	43.5	0.4	6.3e-09	35.1	0.3	2.9	1	1	1	2	2	2	2	Male	sterility	protein
NmrA	PF05368.8	gi|385804361|ref|YP_005840761.1|	-	2.5e-09	36.7	0.1	4.6e-09	35.8	0.0	1.5	1	1	0	1	1	1	1	NmrA-like	family
Saccharop_dh	PF03435.13	gi|385804361|ref|YP_005840761.1|	-	6.9e-06	25.2	0.1	1e-05	24.6	0.0	1.2	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
KR	PF08659.5	gi|385804361|ref|YP_005840761.1|	-	2.8e-05	23.8	0.1	7.2e-05	22.5	0.1	1.7	1	1	0	1	1	1	1	KR	domain
Shikimate_DH	PF01488.15	gi|385804361|ref|YP_005840761.1|	-	0.011	15.8	0.5	0.028	14.5	0.1	1.9	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
TrkA_N	PF02254.13	gi|385804361|ref|YP_005840761.1|	-	0.013	15.4	0.0	0.041	13.8	0.0	1.9	1	0	0	1	1	1	0	TrkA-N	domain
Epimerase	PF01370.16	gi|385804362|ref|YP_005840762.1|	-	4.3e-52	176.9	0.0	5.4e-52	176.5	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_4	PF07993.7	gi|385804362|ref|YP_005840762.1|	-	2.5e-19	69.1	0.0	1.7e-17	63.1	0.0	2.1	1	1	0	1	1	1	1	Male	sterility	protein
3Beta_HSD	PF01073.14	gi|385804362|ref|YP_005840762.1|	-	3.4e-19	68.6	0.0	5e-19	68.0	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.12	gi|385804362|ref|YP_005840762.1|	-	2e-15	56.4	0.0	2.6e-15	56.0	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.10	gi|385804362|ref|YP_005840762.1|	-	4.4e-14	52.0	0.0	4.6e-13	48.7	0.0	2.0	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.1	gi|385804362|ref|YP_005840762.1|	-	4.7e-12	46.2	0.0	7.1e-12	45.6	0.0	1.3	1	0	0	1	1	1	1	NADH(P)-binding
NmrA	PF05368.8	gi|385804362|ref|YP_005840762.1|	-	9.4e-07	28.3	0.0	0.012	14.8	0.0	2.1	2	0	0	2	2	2	2	NmrA-like	family
adh_short	PF00106.20	gi|385804362|ref|YP_005840762.1|	-	5.6e-06	26.3	0.4	9.5e-06	25.6	0.3	1.5	1	1	0	1	1	1	1	short	chain	dehydrogenase
Saccharop_dh	PF03435.13	gi|385804362|ref|YP_005840762.1|	-	0.0023	17.0	0.1	0.0037	16.3	0.1	1.3	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
DapB_N	PF01113.15	gi|385804362|ref|YP_005840762.1|	-	0.0075	16.1	0.4	0.019	14.9	0.1	1.8	2	0	0	2	2	2	1	Dihydrodipicolinate	reductase,	N-terminus
Epimerase_Csub	PF13950.1	gi|385804362|ref|YP_005840762.1|	-	0.091	12.7	0.0	0.21	11.5	0.0	1.6	1	0	0	1	1	1	0	UDP-glucose	4-epimerase	C-term	subunit
KR	PF08659.5	gi|385804362|ref|YP_005840762.1|	-	0.091	12.4	0.1	0.17	11.4	0.1	1.5	1	1	0	1	1	1	0	KR	domain
DegT_DnrJ_EryC1	PF01041.12	gi|385804363|ref|YP_005840763.1|	-	6e-115	384.1	0.0	6.9e-115	383.9	0.0	1.0	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_1_2	PF00155.16	gi|385804363|ref|YP_005840763.1|	-	5.6e-10	38.7	0.0	1.2e-09	37.5	0.0	1.5	2	0	0	2	2	2	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.14	gi|385804363|ref|YP_005840763.1|	-	1.8e-09	36.8	0.0	2.2e-09	36.5	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.16	gi|385804363|ref|YP_005840763.1|	-	1.1e-08	34.6	0.1	6.9e-08	31.9	0.1	1.9	1	1	0	1	1	1	1	Beta-eliminating	lyase
Cys_Met_Meta_PP	PF01053.15	gi|385804363|ref|YP_005840763.1|	-	2.7e-05	22.6	0.0	4.2e-05	22.0	0.0	1.3	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
OKR_DC_1	PF01276.15	gi|385804363|ref|YP_005840763.1|	-	0.015	13.8	0.1	0.029	12.9	0.1	1.5	1	1	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	major	domain
NeuB	PF03102.9	gi|385804364|ref|YP_005840764.1|	-	1.3e-83	279.8	0.0	1.6e-83	279.5	0.0	1.1	1	0	0	1	1	1	1	NeuB	family
SAF	PF08666.7	gi|385804364|ref|YP_005840764.1|	-	6.9e-06	26.3	0.0	2.6e-05	24.5	0.0	2.1	2	0	0	2	2	2	1	SAF	domain
PEP-utilizers_C	PF02896.13	gi|385804365|ref|YP_005840765.1|	-	3.2e-49	167.4	0.0	4.6e-49	166.8	0.0	1.2	1	0	0	1	1	1	1	PEP-utilising	enzyme,	TIM	barrel	domain
PEP-utilizers	PF00391.18	gi|385804365|ref|YP_005840765.1|	-	4e-06	26.2	0.0	7.1e-06	25.4	0.0	1.4	1	0	0	1	1	1	1	PEP-utilising	enzyme,	mobile	domain
Phage_Gp15	PF06854.6	gi|385804365|ref|YP_005840765.1|	-	0.056	12.9	0.8	0.26	10.7	0.3	2.1	2	0	0	2	2	2	0	Bacteriophage	Gp15	protein
DUF3150	PF11348.3	gi|385804365|ref|YP_005840765.1|	-	0.062	12.3	0.4	0.15	11.1	0.1	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3150)
ATPgrasp_Ter	PF15632.1	gi|385804366|ref|YP_005840766.1|	-	1.9e-40	138.6	0.0	3.1e-40	137.9	0.0	1.3	1	1	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp_4	PF13535.1	gi|385804366|ref|YP_005840766.1|	-	5e-29	101.3	0.0	8.4e-29	100.6	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|385804366|ref|YP_005840766.1|	-	2.3e-17	63.3	0.0	3.6e-17	62.6	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.8	gi|385804366|ref|YP_005840766.1|	-	1.4e-07	31.0	0.0	0.00093	18.6	0.0	2.5	1	1	1	2	2	2	2	D-ala	D-ala	ligase	C-terminus
CPSase_L_D2	PF02786.12	gi|385804366|ref|YP_005840766.1|	-	2.3e-07	30.3	0.0	6.9e-06	25.4	0.0	2.3	1	1	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATPgrasp_ST	PF14397.1	gi|385804366|ref|YP_005840766.1|	-	3.1e-05	23.2	0.2	0.00061	18.9	0.0	2.6	2	1	0	2	2	2	1	Sugar-transfer	associated	ATP-grasp
RimK	PF08443.6	gi|385804366|ref|YP_005840766.1|	-	5.7e-05	22.6	0.0	0.0001	21.8	0.0	1.5	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
TTL	PF03133.10	gi|385804366|ref|YP_005840766.1|	-	0.00022	20.2	0.0	0.0051	15.7	0.0	2.1	2	0	0	2	2	2	1	Tubulin-tyrosine	ligase	family
GSH-S_ATP	PF02955.11	gi|385804366|ref|YP_005840766.1|	-	0.0045	16.1	0.0	0.0088	15.2	0.0	1.5	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATPgrasp_TupA	PF14305.1	gi|385804366|ref|YP_005840766.1|	-	0.038	13.2	0.0	0.055	12.7	0.0	1.2	1	0	0	1	1	1	0	TupA-like	ATPgrasp
CPSase_L_chain	PF00289.17	gi|385804366|ref|YP_005840766.1|	-	0.058	13.4	0.0	0.11	12.5	0.0	1.5	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
Metallophos_2	PF12850.2	gi|385804367|ref|YP_005840767.1|	-	2.1e-37	128.3	0.0	2.6e-37	128.0	0.0	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|385804367|ref|YP_005840767.1|	-	1.1e-10	41.2	3.3	2.7e-10	39.9	2.3	1.7	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Glyco_trans_1_3	PF13528.1	gi|385804368|ref|YP_005840768.1|	-	4.1e-09	36.0	0.1	1.5e-05	24.3	0.0	2.9	2	1	1	3	3	3	2	Glycosyl	transferase	family	1
Glyco_trans_1_2	PF13524.1	gi|385804368|ref|YP_005840768.1|	-	0.001	19.2	0.7	0.0035	17.5	0.0	2.2	2	1	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|385804368|ref|YP_005840768.1|	-	0.023	14.8	0.0	0.06	13.4	0.0	1.7	2	0	0	2	2	2	0	Glycosyl	transferases	group	1
CTP_transf_3	PF02348.14	gi|385804369|ref|YP_005840769.1|	-	2.2e-18	66.7	0.3	2.6e-18	66.4	0.2	1.1	1	0	0	1	1	1	1	Cytidylyltransferase
NTP_transf_3	PF12804.2	gi|385804369|ref|YP_005840769.1|	-	1.5e-05	25.1	0.0	1.8e-05	24.8	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
DUF2064	PF09837.4	gi|385804369|ref|YP_005840769.1|	-	5.2e-05	22.8	0.2	0.0001	21.9	0.1	1.4	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2064)
DUF1351	PF07083.6	gi|385804369|ref|YP_005840769.1|	-	0.047	13.3	0.3	0.087	12.4	0.2	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1351)
CofC	PF01983.11	gi|385804369|ref|YP_005840769.1|	-	0.052	12.4	1.0	0.087	11.7	0.4	1.7	2	1	0	2	2	2	0	Guanylyl	transferase	CofC	like
SWIM	PF04434.12	gi|385804371|ref|YP_005840771.1|	-	4.7e-07	29.1	1.6	8.5e-07	28.3	1.1	1.4	1	0	0	1	1	1	1	SWIM	zinc	finger
TPR_12	PF13424.1	gi|385804371|ref|YP_005840771.1|	-	0.67	9.9	9.7	5.1	7.1	0.2	5.0	5	1	1	6	6	6	0	Tetratricopeptide	repeat
TPR_6	PF13174.1	gi|385804371|ref|YP_005840771.1|	-	0.91	10.1	5.1	2.5e+02	2.4	0.0	5.4	5	0	0	5	5	5	0	Tetratricopeptide	repeat
TPR_14	PF13428.1	gi|385804371|ref|YP_005840771.1|	-	5.1	8.0	20.5	12	6.9	0.0	6.8	6	1	1	7	7	7	0	Tetratricopeptide	repeat
Cdc6_C	PF09079.6	gi|385804372|ref|YP_005840772.1|	-	4e-13	48.9	0.0	9.2e-13	47.7	0.0	1.7	1	0	0	1	1	1	1	CDC6,	C	terminal
AAA	PF00004.24	gi|385804372|ref|YP_005840772.1|	-	2e-10	40.9	0.0	5.6e-10	39.5	0.0	1.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.1	gi|385804372|ref|YP_005840772.1|	-	1.3e-08	35.0	0.3	8.7e-08	32.3	0.0	2.3	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|385804372|ref|YP_005840772.1|	-	7.8e-06	26.0	0.0	1.7e-05	24.9	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
NACHT	PF05729.7	gi|385804372|ref|YP_005840772.1|	-	0.00066	19.3	0.0	0.0023	17.6	0.0	1.8	1	1	0	1	1	1	1	NACHT	domain
DUF815	PF05673.8	gi|385804372|ref|YP_005840772.1|	-	0.0053	15.7	0.0	0.0084	15.0	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
Bac_DnaA	PF00308.13	gi|385804372|ref|YP_005840772.1|	-	0.0086	15.7	0.0	0.26	10.9	0.0	2.2	2	0	0	2	2	2	1	Bacterial	dnaA	protein
AAA_19	PF13245.1	gi|385804372|ref|YP_005840772.1|	-	0.073	12.8	0.0	0.2	11.4	0.0	1.8	1	0	0	1	1	1	0	Part	of	AAA	domain
Abhydrolase_9	PF10081.4	gi|385804372|ref|YP_005840772.1|	-	0.085	11.5	0.0	0.13	10.9	0.0	1.2	1	0	0	1	1	1	0	Alpha/beta-hydrolase	family
Mg_chelatase	PF01078.16	gi|385804372|ref|YP_005840772.1|	-	0.085	12.0	0.0	0.21	10.7	0.0	1.6	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
HTH_20	PF12840.2	gi|385804373|ref|YP_005840773.1|	-	0.00018	21.2	0.0	0.00037	20.2	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|385804373|ref|YP_005840773.1|	-	0.01	15.4	0.0	0.23	11.1	0.0	2.5	3	0	0	3	3	3	0	MarR	family
TrmB	PF01978.14	gi|385804373|ref|YP_005840773.1|	-	0.083	12.6	0.0	0.21	11.3	0.0	1.6	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.15	gi|385804373|ref|YP_005840773.1|	-	0.088	12.4	0.0	0.18	11.4	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Cdc6_C	PF09079.6	gi|385804376|ref|YP_005840776.1|	-	8.1e-15	54.3	0.0	1.8e-14	53.1	0.0	1.7	1	0	0	1	1	1	1	CDC6,	C	terminal
AAA_16	PF13191.1	gi|385804376|ref|YP_005840776.1|	-	6.7e-11	42.5	0.0	3.9e-10	40.0	0.0	2.2	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|385804376|ref|YP_005840776.1|	-	9.1e-11	42.0	0.0	2.4e-10	40.6	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|385804376|ref|YP_005840776.1|	-	6.1e-06	26.4	0.2	4.3e-05	23.7	0.1	2.4	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF815	PF05673.8	gi|385804376|ref|YP_005840776.1|	-	0.00016	20.7	0.0	0.00027	19.9	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
Sigma54_activat	PF00158.21	gi|385804376|ref|YP_005840776.1|	-	0.00045	19.7	0.0	0.00092	18.7	0.0	1.5	1	0	0	1	1	1	1	Sigma-54	interaction	domain
AAA_5	PF07728.9	gi|385804376|ref|YP_005840776.1|	-	0.0012	18.5	0.1	0.018	14.7	0.1	2.5	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
RNA_helicase	PF00910.17	gi|385804376|ref|YP_005840776.1|	-	0.003	17.7	0.0	0.017	15.2	0.0	2.3	2	0	0	2	2	2	1	RNA	helicase
ResIII	PF04851.10	gi|385804376|ref|YP_005840776.1|	-	0.0035	17.1	0.0	0.012	15.5	0.0	1.8	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
RuvB_N	PF05496.7	gi|385804376|ref|YP_005840776.1|	-	0.0045	16.0	0.1	0.14	11.1	0.0	2.8	3	0	0	3	3	3	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
DUF2075	PF09848.4	gi|385804376|ref|YP_005840776.1|	-	0.0056	15.6	0.0	0.011	14.7	0.0	1.5	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
NB-ARC	PF00931.17	gi|385804376|ref|YP_005840776.1|	-	0.0074	15.1	0.0	0.016	14.1	0.0	1.5	1	0	0	1	1	1	1	NB-ARC	domain
Sigma54_activ_2	PF14532.1	gi|385804376|ref|YP_005840776.1|	-	0.01	15.8	0.0	0.021	14.8	0.0	1.5	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_2	PF07724.9	gi|385804376|ref|YP_005840776.1|	-	0.018	14.9	0.0	0.051	13.4	0.0	1.7	1	1	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
AAA_17	PF13207.1	gi|385804376|ref|YP_005840776.1|	-	0.024	15.4	0.2	0.11	13.3	0.0	2.4	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|385804376|ref|YP_005840776.1|	-	0.035	13.7	0.0	0.068	12.8	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
Zeta_toxin	PF06414.7	gi|385804376|ref|YP_005840776.1|	-	0.056	12.5	0.0	0.095	11.7	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
Terminase_2	PF03592.11	gi|385804376|ref|YP_005840776.1|	-	0.059	13.6	0.1	0.19	12.0	0.1	2.0	1	1	0	1	1	1	0	Terminase	small	subunit
Myosin_head	PF00063.16	gi|385804376|ref|YP_005840776.1|	-	0.071	11.1	0.0	0.11	10.4	0.0	1.2	1	0	0	1	1	1	0	Myosin	head	(motor	domain)
Mg_chelatase_2	PF13335.1	gi|385804376|ref|YP_005840776.1|	-	0.075	13.4	0.3	0.23	11.8	0.1	1.9	2	0	0	2	2	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_32	PF13654.1	gi|385804376|ref|YP_005840776.1|	-	0.084	11.5	0.5	8	4.9	0.2	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.1	gi|385804376|ref|YP_005840776.1|	-	0.092	12.6	0.0	0.3	10.9	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
DEAD	PF00270.24	gi|385804376|ref|YP_005840776.1|	-	0.12	11.8	0.4	0.98	8.8	0.0	2.2	1	1	0	2	2	2	0	DEAD/DEAH	box	helicase
Mg_chelatase	PF01078.16	gi|385804376|ref|YP_005840776.1|	-	0.13	11.3	0.0	1	8.4	0.0	2.2	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
Acetyltransf_1	PF00583.19	gi|385804378|ref|YP_005840778.1|	-	5.4e-15	55.1	0.0	8.6e-15	54.5	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|385804378|ref|YP_005840778.1|	-	9.2e-12	45.1	0.1	1.1e-11	44.8	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|385804378|ref|YP_005840778.1|	-	2.2e-09	37.3	0.1	4.1e-09	36.4	0.1	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|385804378|ref|YP_005840778.1|	-	9.6e-08	32.1	0.1	1.3e-07	31.6	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|385804378|ref|YP_005840778.1|	-	5.6e-07	29.2	0.2	2e-06	27.4	0.0	1.8	2	0	0	2	2	2	1	FR47-like	protein
Acetyltransf_CG	PF14542.1	gi|385804378|ref|YP_005840778.1|	-	3.2e-05	23.7	0.0	8.1e-05	22.4	0.0	1.8	1	1	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_8	PF13523.1	gi|385804378|ref|YP_005840778.1|	-	0.0011	18.8	0.1	0.0014	18.5	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|385804378|ref|YP_005840778.1|	-	0.0057	16.5	0.0	0.019	14.7	0.0	1.7	1	1	1	2	2	2	1	Acetyltransferase	(GNAT)	domain
DUF3749	PF12568.3	gi|385804378|ref|YP_005840778.1|	-	0.016	14.8	0.0	0.03	13.9	0.0	1.4	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
DUF488	PF04343.8	gi|385804378|ref|YP_005840778.1|	-	0.047	14.0	1.0	1.9	8.9	0.0	2.4	2	1	1	3	3	3	0	Protein	of	unknown	function,	DUF488
BPD_transp_2	PF02653.11	gi|385804379|ref|YP_005840779.1|	-	1.9e-33	115.5	43.3	1.9e-33	115.5	30.0	1.6	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.11	gi|385804380|ref|YP_005840780.1|	-	1.6e-41	142.0	29.7	1.6e-41	142.0	20.6	1.6	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
E1-E2_ATPase	PF00122.15	gi|385804380|ref|YP_005840780.1|	-	9.9	5.1	6.5	0.61	9.0	0.0	2.2	2	1	0	2	2	2	0	E1-E2	ATPase
ABC_tran	PF00005.22	gi|385804381|ref|YP_005840781.1|	-	1.5e-31	109.5	0.0	2e-31	109.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385804381|ref|YP_005840781.1|	-	3e-13	50.3	4.4	1.6e-10	41.4	3.0	2.1	1	1	0	1	1	1	1	AAA	domain
BCA_ABC_TP_C	PF12399.3	gi|385804381|ref|YP_005840781.1|	-	2.1e-10	40.0	0.2	4.9e-10	38.8	0.1	1.6	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_29	PF13555.1	gi|385804381|ref|YP_005840781.1|	-	2.4e-06	26.9	0.3	4.5e-06	26.0	0.2	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|385804381|ref|YP_005840781.1|	-	8.6e-06	26.2	0.0	1.1e-05	25.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|385804381|ref|YP_005840781.1|	-	0.00034	19.9	0.1	0.019	14.2	0.1	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
MukB	PF04310.7	gi|385804381|ref|YP_005840781.1|	-	0.0024	17.2	0.2	0.0039	16.5	0.2	1.3	1	0	0	1	1	1	1	MukB	N-terminal
AAA_10	PF12846.2	gi|385804381|ref|YP_005840781.1|	-	0.0067	15.8	0.4	1.6	8.1	0.2	2.5	1	1	2	3	3	3	1	AAA-like	domain
AAA	PF00004.24	gi|385804381|ref|YP_005840781.1|	-	0.031	14.4	0.0	2.1	8.5	0.0	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF258	PF03193.11	gi|385804381|ref|YP_005840781.1|	-	0.039	13.1	0.0	0.068	12.3	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
MMR_HSR1	PF01926.18	gi|385804381|ref|YP_005840781.1|	-	0.085	12.8	0.0	0.14	12.1	0.0	1.5	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
Zeta_toxin	PF06414.7	gi|385804381|ref|YP_005840781.1|	-	0.086	11.9	0.0	0.15	11.1	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
ABC_tran	PF00005.22	gi|385804382|ref|YP_005840782.1|	-	1.3e-31	109.6	0.0	2e-31	109.0	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385804382|ref|YP_005840782.1|	-	2.8e-10	40.6	0.0	0.00031	20.8	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|385804382|ref|YP_005840782.1|	-	0.0002	20.6	1.5	0.0031	16.7	1.0	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
MutS_V	PF00488.16	gi|385804382|ref|YP_005840782.1|	-	0.00027	20.4	0.0	0.00039	19.8	0.0	1.2	1	0	0	1	1	1	1	MutS	domain	V
AAA_29	PF13555.1	gi|385804382|ref|YP_005840782.1|	-	0.001	18.5	0.2	0.002	17.6	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|385804382|ref|YP_005840782.1|	-	0.0016	18.7	0.0	0.0022	18.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|385804382|ref|YP_005840782.1|	-	0.0021	18.1	0.0	0.004	17.1	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_10	PF12846.2	gi|385804382|ref|YP_005840782.1|	-	0.0092	15.4	1.5	0.044	13.2	0.5	2.0	1	1	0	2	2	2	1	AAA-like	domain
AAA_30	PF13604.1	gi|385804382|ref|YP_005840782.1|	-	0.018	14.6	0.1	0.039	13.5	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|385804382|ref|YP_005840782.1|	-	0.023	14.8	0.1	0.19	11.8	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
ArgK	PF03308.11	gi|385804382|ref|YP_005840782.1|	-	0.027	13.2	0.1	0.041	12.6	0.0	1.2	1	0	0	1	1	1	0	ArgK	protein
NB-ARC	PF00931.17	gi|385804382|ref|YP_005840782.1|	-	0.045	12.6	0.2	0.065	12.0	0.1	1.2	1	0	0	1	1	1	0	NB-ARC	domain
AAA_33	PF13671.1	gi|385804382|ref|YP_005840782.1|	-	0.062	13.1	0.0	0.1	12.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
MobB	PF03205.9	gi|385804382|ref|YP_005840782.1|	-	0.069	12.8	0.1	0.12	12.0	0.1	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_15	PF13175.1	gi|385804382|ref|YP_005840782.1|	-	0.076	12.0	0.0	0.27	10.2	0.0	1.7	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_25	PF13481.1	gi|385804382|ref|YP_005840782.1|	-	0.095	12.0	0.0	0.19	11.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_17	PF13207.1	gi|385804382|ref|YP_005840782.1|	-	0.16	12.7	0.7	0.27	12.0	0.2	1.7	2	1	0	2	2	1	0	AAA	domain
SbcCD_C	PF13558.1	gi|385804382|ref|YP_005840782.1|	-	8.6	6.3	8.7	3.4	7.6	1.5	2.7	2	1	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
Plasmid_stabil	PF05016.9	gi|385804383|ref|YP_005840783.1|	-	5.4e-09	36.3	2.5	6.1e-09	36.1	1.7	1.0	1	0	0	1	1	1	1	Plasmid	stabilisation	system	protein
RHH_1	PF01402.16	gi|385804384|ref|YP_005840784.1|	-	2.4e-05	24.0	0.3	6.2e-05	22.7	0.0	1.9	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
DNA_gyraseB	PF00204.20	gi|385804384|ref|YP_005840784.1|	-	0.065	12.4	0.0	0.082	12.1	0.0	1.2	1	0	0	1	1	1	0	DNA	gyrase	B
PSK_trans_fac	PF07704.6	gi|385804384|ref|YP_005840784.1|	-	0.11	13.1	1.1	0.17	12.5	0.5	1.5	1	1	0	1	1	1	0	Rv0623-like	transcription	factor
DUF2064	PF09837.4	gi|385804386|ref|YP_005840786.1|	-	4.9e-06	26.1	0.0	7.5e-06	25.5	0.0	1.3	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2064)
CofC	PF01983.11	gi|385804386|ref|YP_005840786.1|	-	0.044	12.7	0.1	2.3	7.0	0.1	2.1	1	1	0	1	1	1	0	Guanylyl	transferase	CofC	like
UDG	PF03167.14	gi|385804387|ref|YP_005840787.1|	-	1.1e-21	76.8	0.0	1.3e-21	76.6	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
DUF539	PF04400.8	gi|385804387|ref|YP_005840787.1|	-	0.025	14.0	0.3	0.045	13.2	0.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF539)
NTP_transferase	PF00483.18	gi|385804388|ref|YP_005840788.1|	-	1.7e-27	96.3	0.0	2e-27	96.0	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|385804388|ref|YP_005840788.1|	-	3e-12	46.9	0.1	4e-12	46.4	0.1	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.14	gi|385804388|ref|YP_005840788.1|	-	7e-07	28.9	0.3	1.5e-06	27.8	0.2	1.6	1	1	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Glycos_transf_2	PF00535.21	gi|385804388|ref|YP_005840788.1|	-	0.0098	15.5	0.1	0.014	15.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
NTP_transferase	PF00483.18	gi|385804389|ref|YP_005840789.1|	-	5e-43	147.1	0.0	5.9e-43	146.9	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|385804389|ref|YP_005840789.1|	-	2.8e-14	53.4	0.0	3.4e-14	53.2	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.14	gi|385804389|ref|YP_005840789.1|	-	0.00018	21.1	0.0	0.00091	18.8	0.0	2.0	1	1	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Glycos_transf_2	PF00535.21	gi|385804389|ref|YP_005840789.1|	-	0.038	13.6	0.0	0.05	13.2	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
Epimerase	PF01370.16	gi|385804390|ref|YP_005840790.1|	-	2.4e-63	213.7	0.0	2.9e-63	213.4	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|385804390|ref|YP_005840790.1|	-	6.8e-25	87.3	0.0	9e-25	86.9	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.12	gi|385804390|ref|YP_005840790.1|	-	3.6e-18	65.4	0.1	4.8e-18	65.0	0.1	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.10	gi|385804390|ref|YP_005840790.1|	-	7.2e-15	54.6	0.0	4e-14	52.1	0.0	1.8	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.7	gi|385804390|ref|YP_005840790.1|	-	1.6e-13	50.1	0.0	3.3e-13	49.1	0.0	1.5	1	1	0	1	1	1	1	Male	sterility	protein
NAD_binding_10	PF13460.1	gi|385804390|ref|YP_005840790.1|	-	8.3e-12	45.4	0.5	9.5e-11	42.0	0.3	2.1	1	1	0	1	1	1	1	NADH(P)-binding
adh_short	PF00106.20	gi|385804390|ref|YP_005840790.1|	-	1.1e-09	38.3	0.0	3.1e-09	36.9	0.0	1.7	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|385804390|ref|YP_005840790.1|	-	0.00029	20.5	0.0	0.0017	18.0	0.0	2.1	1	1	0	1	1	1	1	KR	domain
NmrA	PF05368.8	gi|385804390|ref|YP_005840790.1|	-	0.001	18.3	0.1	0.0021	17.3	0.1	1.6	1	1	0	1	1	1	1	NmrA-like	family
Epimerase_Csub	PF13950.1	gi|385804390|ref|YP_005840790.1|	-	0.0042	16.9	0.1	0.012	15.5	0.0	1.7	2	0	0	2	2	2	1	UDP-glucose	4-epimerase	C-term	subunit
NAD_binding_2	PF03446.10	gi|385804390|ref|YP_005840790.1|	-	0.026	14.3	0.0	0.047	13.5	0.0	1.5	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
3HCDH_N	PF02737.13	gi|385804390|ref|YP_005840790.1|	-	0.056	13.0	0.0	0.16	11.6	0.0	1.9	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.13	gi|385804390|ref|YP_005840790.1|	-	0.082	12.9	0.1	1.1	9.2	0.1	2.7	2	2	0	2	2	2	0	TrkA-N	domain
Peripla_BP_6	PF13458.1	gi|385804391|ref|YP_005840791.1|	-	2.5e-27	96.1	7.4	8e-20	71.4	0.7	2.3	2	0	0	2	2	2	2	Periplasmic	binding	protein
ANF_receptor	PF01094.23	gi|385804391|ref|YP_005840791.1|	-	6.1e-16	58.1	1.4	1.2e-12	47.3	0.3	2.1	2	0	0	2	2	2	2	Receptor	family	ligand	binding	region
Peripla_BP_5	PF13433.1	gi|385804391|ref|YP_005840791.1|	-	0.00012	20.9	0.3	0.013	14.3	0.1	2.2	2	0	0	2	2	2	2	Periplasmic	binding	protein	domain
HTH_18	PF12833.2	gi|385804391|ref|YP_005840791.1|	-	0.14	12.2	0.1	1.3	9.1	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF433	PF04255.9	gi|385804393|ref|YP_005840793.1|	-	1e-07	31.2	0.1	2e-07	30.3	0.1	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF433)
DUF4296	PF14129.1	gi|385804393|ref|YP_005840793.1|	-	0.015	15.4	0.0	0.016	15.3	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4296)
Ca_chan_IQ	PF08763.6	gi|385804393|ref|YP_005840793.1|	-	0.1	11.8	0.0	0.18	11.1	0.0	1.4	1	0	0	1	1	1	0	Voltage	gated	calcium	channel	IQ	domain
DDE_5	PF13546.1	gi|385804394|ref|YP_005840794.1|	-	5.5e-20	71.3	0.0	8.7e-20	70.6	0.0	1.2	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.16	gi|385804394|ref|YP_005840794.1|	-	2.8e-17	62.9	0.4	5.2e-17	62.0	0.1	1.6	2	1	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.7	gi|385804394|ref|YP_005840794.1|	-	0.00011	21.3	0.5	0.00045	19.3	0.3	1.8	1	1	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1_6	PF13751.1	gi|385804394|ref|YP_005840794.1|	-	0.01	15.8	0.0	0.035	14.1	0.0	1.9	2	0	0	2	2	2	0	Transposase	DDE	domain
Bac_transf	PF02397.11	gi|385804397|ref|YP_005840797.1|	-	2.8e-61	205.8	0.0	6e-61	204.8	0.0	1.5	1	0	0	1	1	1	1	Bacterial	sugar	transferase
DDE_3	PF13358.1	gi|529167408|ref|YP_005840799.2|	-	2.7e-21	75.8	0.0	5.1e-21	74.9	0.0	1.5	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_29	PF13551.1	gi|529167408|ref|YP_005840799.2|	-	8.3e-16	58.1	0.1	1.8e-15	57.0	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_32	PF13565.1	gi|529167408|ref|YP_005840799.2|	-	1.9e-09	38.1	0.1	1.4e-08	35.3	0.0	2.4	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_33	PF13592.1	gi|529167408|ref|YP_005840799.2|	-	7.4e-09	35.0	3.2	1.9e-08	33.7	0.0	3.3	4	0	0	4	4	4	1	Winged	helix-turn	helix
HTH_28	PF13518.1	gi|529167408|ref|YP_005840799.2|	-	1e-07	31.7	0.1	6e-07	29.3	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|529167408|ref|YP_005840799.2|	-	2.3e-07	30.2	0.1	1.6e-06	27.5	0.0	2.1	2	0	0	2	2	2	1	Homeodomain-like	domain
DDE_1	PF03184.14	gi|529167408|ref|YP_005840799.2|	-	0.00045	19.4	0.0	0.00081	18.5	0.0	1.3	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.21	gi|529167408|ref|YP_005840799.2|	-	0.0014	18.7	0.0	0.0037	17.3	0.0	1.7	1	0	0	1	1	1	1	Integrase	core	domain
Terminase_5	PF06056.7	gi|529167408|ref|YP_005840799.2|	-	0.0029	17.1	0.0	0.0073	15.8	0.0	1.7	1	0	0	1	1	1	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
Glycos_transf_1	PF00534.15	gi|385804400|ref|YP_005840800.1|	-	8.2e-32	109.9	0.0	1.3e-31	109.3	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|385804400|ref|YP_005840800.1|	-	1.5e-19	70.6	0.2	6e-19	68.7	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_4	PF13692.1	gi|385804400|ref|YP_005840800.1|	-	3.3e-18	66.1	0.0	7.1e-18	65.0	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|385804400|ref|YP_005840800.1|	-	6.7e-17	61.7	0.1	9.5e-17	61.2	0.1	1.2	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_2	PF13477.1	gi|385804400|ref|YP_005840800.1|	-	2.9e-08	33.6	0.0	4.4e-08	33.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
DUF3492	PF11997.3	gi|385804400|ref|YP_005840800.1|	-	0.00018	21.1	0.3	0.37	10.3	0.4	2.4	2	1	0	2	2	2	2	Domain	of	unknown	function	(DUF3492)
Glyco_trans_1_2	PF13524.1	gi|385804400|ref|YP_005840800.1|	-	0.025	14.8	0.0	0.057	13.6	0.0	1.6	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
Glycos_transf_N	PF04413.11	gi|385804400|ref|YP_005840800.1|	-	0.027	13.6	0.0	0.44	9.6	0.0	2.3	2	0	0	2	2	2	0	3-Deoxy-D-manno-octulosonic-acid	transferase	(kdotransferase)
Glyco_transf_5	PF08323.6	gi|385804400|ref|YP_005840800.1|	-	0.12	11.8	0.6	0.71	9.3	0.1	2.0	1	1	1	2	2	2	0	Starch	synthase	catalytic	domain
Asn_synthase	PF00733.16	gi|385804401|ref|YP_005840801.1|	-	4.9e-76	255.6	0.0	8.8e-76	254.7	0.0	1.4	1	1	0	1	1	1	1	Asparagine	synthase
GATase_7	PF13537.1	gi|385804401|ref|YP_005840801.1|	-	9.8e-43	144.8	0.2	3.9e-42	142.9	0.0	2.0	2	0	0	2	2	2	1	Glutamine	amidotransferase	domain
GATase_6	PF13522.1	gi|385804401|ref|YP_005840801.1|	-	3e-39	133.9	0.1	7.3e-39	132.7	0.0	1.7	2	0	0	2	2	2	1	Glutamine	amidotransferase	domain
GATase_2	PF00310.16	gi|385804401|ref|YP_005840801.1|	-	0.00055	18.7	0.2	0.57	8.8	0.1	2.3	1	1	1	2	2	2	2	Glutamine	amidotransferases	class-II
DUF3700	PF12481.3	gi|385804401|ref|YP_005840801.1|	-	0.0029	16.8	0.1	0.015	14.4	0.1	2.2	2	1	0	2	2	2	1	Aluminium	induced	protein
QueC	PF06508.8	gi|385804401|ref|YP_005840801.1|	-	0.16	11.2	0.0	0.31	10.2	0.0	1.4	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
DDE_Tnp_IS66	PF03050.9	gi|385804402|ref|YP_005840802.1|	-	7.5e-53	179.4	0.6	1.1e-52	178.9	0.5	1.3	1	0	0	1	1	1	1	Transposase	IS66	family
DDE_Tnp_IS240	PF13610.1	gi|385804402|ref|YP_005840802.1|	-	0.0031	17.4	1.2	0.21	11.5	0.0	2.9	3	0	0	3	3	3	1	DDE	domain
TBPIP	PF07106.8	gi|385804402|ref|YP_005840802.1|	-	0.011	15.3	2.7	0.06	12.8	0.3	2.3	2	0	0	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
DUF3166	PF11365.3	gi|385804402|ref|YP_005840802.1|	-	0.015	15.7	0.2	0.015	15.7	0.2	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3166)
FliJ	PF02050.11	gi|385804402|ref|YP_005840802.1|	-	0.043	13.8	4.7	2.5	8.1	1.6	2.5	2	0	0	2	2	2	0	Flagellar	FliJ	protein
Med9	PF07544.8	gi|385804402|ref|YP_005840802.1|	-	0.054	13.2	2.9	0.51	10.1	1.4	2.5	2	0	0	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
DUF305	PF03713.8	gi|385804402|ref|YP_005840802.1|	-	0.2	11.4	1.0	0.35	10.6	0.2	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF305)
CCDC74_C	PF14917.1	gi|385804402|ref|YP_005840802.1|	-	0.31	11.1	4.6	0.39	10.7	0.3	2.4	2	0	0	2	2	2	0	Coiled	coil	protein	74,	C	terminal
SlyX	PF04102.7	gi|385804402|ref|YP_005840802.1|	-	1.1	9.6	6.8	9.3	6.7	2.4	3.1	2	1	0	2	2	2	0	SlyX
Sigma70_ner	PF04546.8	gi|385804402|ref|YP_005840802.1|	-	4.9	6.6	9.4	5	6.6	3.7	2.2	2	0	0	2	2	2	0	Sigma-70,	non-essential	region
Sulfatase	PF00884.18	gi|385804403|ref|YP_005840803.1|	-	1.9e-38	132.4	0.1	2.5e-38	131.9	0.0	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.17	gi|385804403|ref|YP_005840803.1|	-	4.4e-06	26.2	1.3	0.0022	17.4	0.3	2.5	2	1	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Metalloenzyme	PF01676.13	gi|385804403|ref|YP_005840803.1|	-	0.0065	15.8	0.0	0.014	14.8	0.0	1.5	1	0	0	1	1	1	1	Metalloenzyme	superfamily
Glycos_transf_1	PF00534.15	gi|385804404|ref|YP_005840804.1|	-	2.1e-36	124.9	0.0	5.9e-36	123.4	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|385804404|ref|YP_005840804.1|	-	9.3e-19	67.9	0.0	9.4e-18	64.6	0.0	2.0	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|385804404|ref|YP_005840804.1|	-	1.4e-14	54.0	0.0	2.7e-14	53.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|385804404|ref|YP_005840804.1|	-	0.001	18.7	0.0	0.003	17.2	0.0	1.7	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.1	gi|385804404|ref|YP_005840804.1|	-	0.038	14.1	0.0	0.068	13.3	0.0	1.5	1	0	0	1	1	1	0	Glycosyl	transferase	4-like	domain
PMT_2	PF13231.1	gi|385804405|ref|YP_005840805.1|	-	3.1e-06	27.1	20.1	3.1e-06	27.1	13.9	2.4	2	0	0	2	2	2	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
DDE_Tnp_1	PF01609.16	gi|385804406|ref|YP_005840806.1|	-	2.5e-17	63.1	0.0	3.5e-17	62.6	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.1	gi|385804406|ref|YP_005840806.1|	-	0.057	13.4	0.0	0.11	12.5	0.0	1.4	1	0	0	1	1	1	0	Transposase	DDE	domain
QueC	PF06508.8	gi|385804407|ref|YP_005840807.1|	-	0.12	11.6	0.0	0.2	10.9	0.0	1.3	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
DDE_Tnp_1	PF01609.16	gi|385804408|ref|YP_005840808.1|	-	6.7e-09	35.6	0.1	1e-08	35.0	0.1	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
Glycos_transf_1	PF00534.15	gi|385804409|ref|YP_005840809.1|	-	1.5e-26	92.8	0.0	1.2e-25	89.8	0.0	2.1	1	1	1	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|385804409|ref|YP_005840809.1|	-	1e-13	51.5	0.0	1.7e-13	50.9	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|385804409|ref|YP_005840809.1|	-	7.6e-07	29.4	0.0	4.1e-06	27.0	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.1	gi|385804409|ref|YP_005840809.1|	-	0.00014	21.6	0.0	0.048	13.3	0.0	2.5	2	1	0	2	2	2	2	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.1	gi|385804409|ref|YP_005840809.1|	-	0.00049	20.3	0.0	0.001	19.3	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.1	gi|385804409|ref|YP_005840809.1|	-	0.0036	17.1	0.0	0.032	14.0	0.0	2.2	2	0	0	2	2	2	1	Glycosyl	transferase	4-like
Methyltransf_21	PF05050.7	gi|385804410|ref|YP_005840810.1|	-	2.7e-28	99.0	0.0	3.7e-28	98.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	FkbM	domain
Methyltransf_18	PF12847.2	gi|385804410|ref|YP_005840810.1|	-	1.1e-06	29.1	0.0	4.7e-06	27.1	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
Met_10	PF02475.11	gi|385804410|ref|YP_005840810.1|	-	3.2e-05	23.6	0.0	4.1e-05	23.2	0.0	1.2	1	0	0	1	1	1	1	Met-10+	like-protein
V_cholerae_RfbT	PF05575.6	gi|385804410|ref|YP_005840810.1|	-	0.00031	19.9	0.0	0.00061	18.9	0.0	1.5	1	1	0	1	1	1	1	Vibrio	cholerae	RfbT	protein
Nol1_Nop2_Fmu	PF01189.12	gi|385804410|ref|YP_005840810.1|	-	0.03	13.7	0.0	0.039	13.3	0.0	1.1	1	0	0	1	1	1	0	NOL1/NOP2/sun	family
DUF4238	PF14022.1	gi|385804410|ref|YP_005840810.1|	-	0.08	12.2	0.1	0.13	11.5	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4238)
DDE_5	PF13546.1	gi|385804412|ref|YP_005840812.1|	-	3e-20	72.2	0.0	4.5e-20	71.6	0.0	1.2	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.16	gi|385804412|ref|YP_005840812.1|	-	3.3e-18	66.0	0.3	6e-18	65.1	0.1	1.6	2	0	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.7	gi|385804412|ref|YP_005840812.1|	-	0.00019	20.5	0.4	0.00083	18.4	0.3	1.8	1	1	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1_6	PF13751.1	gi|385804412|ref|YP_005840812.1|	-	0.0098	15.8	0.0	0.035	14.1	0.0	1.9	2	0	0	2	2	2	1	Transposase	DDE	domain
Capsule_synth	PF05159.9	gi|385804414|ref|YP_005840814.1|	-	7.4e-05	22.3	0.1	0.00016	21.2	0.1	1.5	1	0	0	1	1	1	1	Capsule	polysaccharide	biosynthesis	protein
Glyphos_transf	PF04464.9	gi|385804414|ref|YP_005840814.1|	-	0.0038	16.0	0.6	0.015	14.0	0.4	2.0	1	1	0	1	1	1	1	CDP-Glycerol:Poly(glycerophosphate)	glycerophosphotransferase
DUF354	PF04007.7	gi|385804414|ref|YP_005840814.1|	-	0.01	14.7	0.0	0.017	13.9	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF354)
RHH_1	PF01402.16	gi|385804415|ref|YP_005840815.1|	-	0.0028	17.4	4.1	0.0034	17.2	0.7	2.4	2	1	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
Capsule_synth	PF05159.9	gi|385804417|ref|YP_005840817.1|	-	6.1e-21	75.0	0.0	9.1e-21	74.5	0.0	1.2	1	0	0	1	1	1	1	Capsule	polysaccharide	biosynthesis	protein
DUF4330	PF14221.1	gi|385804418|ref|YP_005840818.1|	-	5.4e-33	114.2	15.7	4.2e-11	43.0	0.0	5.1	4	1	0	4	4	4	4	Domain	of	unknown	function	(DUF4330)
HlyD_3	PF13437.1	gi|385804418|ref|YP_005840818.1|	-	0.67	10.3	8.5	3.3	8.1	0.0	4.5	4	1	2	6	6	6	0	HlyD	family	secretion	protein
BacA	PF02673.13	gi|385804420|ref|YP_005840820.1|	-	6.1e-45	153.4	17.6	7.5e-45	153.1	12.2	1.0	1	0	0	1	1	1	1	Bacitracin	resistance	protein	BacA
Tim17	PF02466.14	gi|385804420|ref|YP_005840820.1|	-	1.4	8.9	12.8	1.8	8.6	2.1	3.0	2	1	0	2	2	2	0	Tim17/Tim22/Tim23/Pmp24	family
HTH_11	PF08279.7	gi|385804421|ref|YP_005840821.1|	-	0.00013	21.5	0.1	0.0023	17.5	0.0	2.4	2	0	0	2	2	2	1	HTH	domain
TrmB	PF01978.14	gi|385804421|ref|YP_005840821.1|	-	0.00019	21.0	0.1	0.00044	19.8	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.15	gi|385804421|ref|YP_005840821.1|	-	0.00036	20.1	0.0	0.011	15.4	0.0	2.4	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.5	gi|385804421|ref|YP_005840821.1|	-	0.00076	19.0	0.1	0.0018	17.8	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Ribosomal_S25	PF03297.10	gi|385804421|ref|YP_005840821.1|	-	0.0016	18.4	0.0	0.0027	17.7	0.0	1.4	1	0	0	1	1	1	1	S25	ribosomal	protein
HTH_20	PF12840.2	gi|385804421|ref|YP_005840821.1|	-	0.0018	18.0	0.0	0.0071	16.1	0.0	2.1	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|385804421|ref|YP_005840821.1|	-	0.016	14.7	0.0	0.057	12.9	0.0	1.9	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
Rrf2	PF02082.15	gi|385804421|ref|YP_005840821.1|	-	0.019	15.0	0.0	0.051	13.7	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator
DUF742	PF05331.6	gi|385804421|ref|YP_005840821.1|	-	0.029	13.9	0.1	0.044	13.3	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
FaeA	PF04703.7	gi|385804421|ref|YP_005840821.1|	-	0.048	13.8	0.0	0.12	12.5	0.0	1.6	1	0	0	1	1	1	0	FaeA-like	protein
HTH_40	PF14493.1	gi|385804421|ref|YP_005840821.1|	-	0.056	13.6	0.8	0.24	11.6	0.5	2.1	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|385804421|ref|YP_005840821.1|	-	0.057	12.8	0.0	0.12	11.8	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.1	gi|385804421|ref|YP_005840821.1|	-	0.059	13.0	2.0	0.18	11.5	0.0	2.7	3	0	0	3	3	2	0	Homeodomain-like	domain
HTH_Tnp_ISL3	PF13542.1	gi|385804421|ref|YP_005840821.1|	-	0.075	12.2	0.3	0.36	10.0	0.1	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_36	PF13730.1	gi|385804421|ref|YP_005840821.1|	-	0.081	13.0	0.1	0.3	11.2	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
SPATIAL	PF15256.1	gi|385804421|ref|YP_005840821.1|	-	0.084	12.9	0.5	0.12	12.4	0.3	1.2	1	0	0	1	1	1	0	SPATIAL
GntR	PF00392.16	gi|385804421|ref|YP_005840821.1|	-	0.085	12.3	0.2	0.25	10.8	0.0	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
DUF86	PF01934.12	gi|385804422|ref|YP_005840822.1|	-	3.2e-11	42.8	0.2	3.9e-11	42.6	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF86
HTH_20	PF12840.2	gi|385804423|ref|YP_005840823.1|	-	0.0021	17.8	1.4	0.0073	16.0	0.1	2.1	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_40	PF14493.1	gi|385804423|ref|YP_005840823.1|	-	0.019	15.1	0.2	0.053	13.7	0.1	1.9	1	1	0	1	1	1	0	Helix-turn-helix	domain
GntR	PF00392.16	gi|385804423|ref|YP_005840823.1|	-	0.021	14.2	0.1	0.039	13.3	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
rve_3	PF13683.1	gi|385804423|ref|YP_005840823.1|	-	0.035	13.6	1.4	0.11	11.9	0.1	2.3	1	1	0	2	2	2	0	Integrase	core	domain
Penicillinase_R	PF03965.11	gi|385804423|ref|YP_005840823.1|	-	0.05	13.7	0.0	0.076	13.1	0.0	1.5	1	1	0	1	1	1	0	Penicillinase	repressor
HTH_Tnp_ISL3	PF13542.1	gi|385804423|ref|YP_005840823.1|	-	0.069	12.3	0.1	0.13	11.4	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_DeoR	PF08220.7	gi|385804423|ref|YP_005840823.1|	-	0.081	12.4	0.0	0.18	11.3	0.0	1.6	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|385804423|ref|YP_005840823.1|	-	0.099	12.2	0.1	0.26	10.9	0.1	1.7	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Antitoxin-MazE	PF04014.13	gi|385804426|ref|YP_005840826.1|	-	4.6e-09	35.7	0.2	6.3e-09	35.3	0.2	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
HTH_20	PF12840.2	gi|385804428|ref|YP_005840828.1|	-	2.8e-10	39.8	0.1	8.8e-07	28.6	0.0	3.3	2	1	1	3	3	3	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|385804428|ref|YP_005840828.1|	-	1.6e-09	37.3	0.0	3.6e-06	26.5	0.0	2.4	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.15	gi|385804428|ref|YP_005840828.1|	-	2.7e-07	30.1	0.0	0.00023	20.7	0.0	2.9	3	0	0	3	3	3	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.5	gi|385804428|ref|YP_005840828.1|	-	1.1e-06	28.0	0.5	0.042	13.4	0.0	2.8	3	0	0	3	3	3	2	IclR	helix-turn-helix	domain
HTH_29	PF13551.1	gi|385804428|ref|YP_005840828.1|	-	5.8e-06	26.4	0.0	0.12	12.5	0.0	2.3	2	0	0	2	2	2	2	Winged	helix-turn	helix
MarR	PF01047.17	gi|385804428|ref|YP_005840828.1|	-	1.3e-05	24.7	0.0	0.007	16.0	0.0	2.6	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.1	gi|385804428|ref|YP_005840828.1|	-	1.8e-05	23.9	0.0	0.094	12.1	0.0	2.6	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.7	gi|385804428|ref|YP_005840828.1|	-	8.5e-05	22.1	0.1	0.0057	16.2	0.0	2.3	2	0	0	2	2	2	1	HTH	domain
Rrf2	PF02082.15	gi|385804428|ref|YP_005840828.1|	-	0.00011	22.2	0.0	0.039	14.0	0.0	2.3	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_36	PF13730.1	gi|385804428|ref|YP_005840828.1|	-	0.00013	22.0	0.1	0.00046	20.2	0.0	2.0	3	0	0	3	3	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|385804428|ref|YP_005840828.1|	-	0.00016	21.2	0.0	0.054	13.1	0.0	2.4	2	0	0	2	2	2	1	MarR	family
HTH_27	PF13463.1	gi|385804428|ref|YP_005840828.1|	-	0.00046	20.4	0.2	0.2	11.9	0.1	2.6	2	1	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_28	PF13518.1	gi|385804428|ref|YP_005840828.1|	-	0.0005	20.0	0.0	0.21	11.6	0.0	2.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
PadR	PF03551.9	gi|385804428|ref|YP_005840828.1|	-	0.00084	19.0	0.1	0.014	15.1	0.0	2.7	4	0	0	4	4	2	1	Transcriptional	regulator	PadR-like	family
HTH_7	PF02796.10	gi|385804428|ref|YP_005840828.1|	-	0.00091	19.0	0.2	1	9.2	0.0	2.6	2	0	0	2	2	2	2	Helix-turn-helix	domain	of	resolvase
TetR_N	PF00440.18	gi|385804428|ref|YP_005840828.1|	-	0.0012	18.4	0.4	0.42	10.2	0.0	2.6	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	tetR	family
HTH_23	PF13384.1	gi|385804428|ref|YP_005840828.1|	-	0.0024	17.4	0.0	1.6	8.5	0.0	2.3	2	0	0	2	2	2	1	Homeodomain-like	domain
FUR	PF01475.14	gi|385804428|ref|YP_005840828.1|	-	0.0029	17.5	0.1	0.0096	15.8	0.0	1.8	1	1	1	2	2	2	1	Ferric	uptake	regulator	family
Sulfolobus_pRN	PF05584.6	gi|385804428|ref|YP_005840828.1|	-	0.0089	15.9	0.0	0.019	14.9	0.0	1.5	1	0	0	1	1	1	1	Sulfolobus	plasmid	regulatory	protein
HTH_DeoR	PF08220.7	gi|385804428|ref|YP_005840828.1|	-	0.011	15.2	0.0	0.21	11.1	0.0	2.4	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
HTH_17	PF12728.2	gi|385804428|ref|YP_005840828.1|	-	0.015	15.5	0.0	8.1	6.7	0.0	2.5	2	0	0	2	2	2	0	Helix-turn-helix	domain
B-block_TFIIIC	PF04182.7	gi|385804428|ref|YP_005840828.1|	-	0.068	13.0	0.0	0.18	11.6	0.0	1.7	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
FaeA	PF04703.7	gi|385804428|ref|YP_005840828.1|	-	0.071	13.2	0.1	0.16	12.1	0.1	1.5	1	0	0	1	1	1	0	FaeA-like	protein
Fe_dep_repress	PF01325.14	gi|385804428|ref|YP_005840828.1|	-	0.091	12.7	0.8	0.45	10.4	0.1	2.4	3	0	0	3	3	3	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Phage_AlpA	PF05930.7	gi|385804428|ref|YP_005840828.1|	-	0.14	11.8	0.0	2.5	7.9	0.0	2.4	2	0	0	2	2	2	0	Prophage	CP4-57	regulatory	protein	(AlpA)
HTH_9	PF08221.6	gi|385804428|ref|YP_005840828.1|	-	0.15	11.9	0.0	9.2	6.2	0.0	2.5	2	0	0	2	2	2	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
Antitoxin-MazE	PF04014.13	gi|385804429|ref|YP_005840829.1|	-	4.2e-09	35.9	0.1	7.7e-09	35.0	0.1	1.5	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
PIN	PF01850.16	gi|385804430|ref|YP_005840830.1|	-	0.00018	21.8	0.0	0.00025	21.3	0.0	1.1	1	0	0	1	1	1	1	PIN	domain
Maf_N	PF08383.6	gi|385804430|ref|YP_005840830.1|	-	0.072	12.6	0.0	0.18	11.4	0.0	1.7	1	0	0	1	1	1	0	Maf	N-terminal	region
MarR_2	PF12802.2	gi|385804431|ref|YP_005840831.1|	-	0.0045	16.6	0.1	0.0073	15.9	0.1	1.3	1	0	0	1	1	1	1	MarR	family
FaeA	PF04703.7	gi|385804431|ref|YP_005840831.1|	-	0.032	14.3	0.0	0.046	13.8	0.0	1.3	1	0	0	1	1	1	0	FaeA-like	protein
APH_6_hur	PF04655.9	gi|385804431|ref|YP_005840831.1|	-	0.054	12.6	0.0	0.063	12.4	0.0	1.1	1	0	0	1	1	1	0	Aminoglycoside/hydroxyurea	antibiotic	resistance	kinase
HTH_DeoR	PF08220.7	gi|385804431|ref|YP_005840831.1|	-	0.065	12.7	0.1	0.11	12.1	0.1	1.3	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
NTP_transf_2	PF01909.18	gi|385804433|ref|YP_005840833.1|	-	6.1e-18	64.9	0.1	7.2e-18	64.7	0.1	1.0	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Adenyl_cycl_N	PF12633.2	gi|385804433|ref|YP_005840833.1|	-	0.0064	16.0	0.0	0.0064	16.0	0.0	1.1	1	0	0	1	1	1	1	Adenylate	cyclase	NT	domain
MdcG	PF10620.4	gi|385804433|ref|YP_005840833.1|	-	0.0079	15.7	0.1	0.011	15.3	0.1	1.3	1	1	0	1	1	1	1	Phosphoribosyl-dephospho-CoA	transferase	MdcG
DUF294	PF03445.8	gi|385804433|ref|YP_005840833.1|	-	0.025	14.2	0.0	0.028	14.0	0.0	1.2	1	0	0	1	1	1	0	Putative	nucleotidyltransferase	DUF294
DUF86	PF01934.12	gi|385804434|ref|YP_005840834.1|	-	5.3e-28	97.0	0.1	6.1e-28	96.8	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF86
RepB-RCR_reg	PF10723.4	gi|385804435|ref|YP_005840835.1|	-	0.037	13.7	0.2	0.35	10.6	0.1	2.1	2	1	0	2	2	2	0	Replication	regulatory	protein	RepB
PIN	PF01850.16	gi|385804436|ref|YP_005840836.1|	-	4.5e-12	46.3	0.2	5.2e-12	46.1	0.2	1.1	1	0	0	1	1	1	1	PIN	domain
NTP_transf_2	PF01909.18	gi|385804437|ref|YP_005840837.1|	-	0.0018	18.5	0.1	0.0024	18.1	0.1	1.3	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
HTH_45	PF14947.1	gi|385804440|ref|YP_005840840.1|	-	5.2e-05	22.9	0.0	7.2e-05	22.5	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
Mrr_N	PF14338.1	gi|385804440|ref|YP_005840840.1|	-	0.051	13.6	0.0	0.1	12.7	0.0	1.5	1	1	1	2	2	2	0	Mrr	N-terminal	domain
RepL	PF05732.6	gi|385804440|ref|YP_005840840.1|	-	0.082	12.1	0.0	0.083	12.1	0.0	1.1	1	0	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
HTH_12	PF08461.5	gi|385804440|ref|YP_005840840.1|	-	0.12	12.1	0.1	0.31	10.8	0.1	1.8	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
DUF433	PF04255.9	gi|385804441|ref|YP_005840841.1|	-	2.7e-16	58.6	0.1	3.2e-16	58.4	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF433)
NTP_transf_2	PF01909.18	gi|385804443|ref|YP_005840843.1|	-	4.7e-06	26.8	0.1	6.7e-06	26.3	0.0	1.3	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
DUF86	PF01934.12	gi|385804444|ref|YP_005840844.1|	-	1.2e-06	28.2	0.1	1.3e-06	28.0	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF86
SMK-1	PF04802.10	gi|385804444|ref|YP_005840844.1|	-	0.085	12.3	0.0	0.091	12.2	0.0	1.2	1	0	0	1	1	1	0	Component	of	IIS	longevity	pathway	SMK-1
RHH_1	PF01402.16	gi|385804444|ref|YP_005840844.1|	-	0.12	12.2	0.0	0.26	11.2	0.0	1.6	1	0	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
DUF86	PF01934.12	gi|385804445|ref|YP_005840845.1|	-	9.6e-12	44.6	0.1	1e-11	44.4	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF86
DUF217	PF02697.9	gi|385804448|ref|YP_005840848.1|	-	1.1e-12	48.0	0.2	1.4e-12	47.6	0.1	1.2	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1753
DUF433	PF04255.9	gi|385804449|ref|YP_005840849.1|	-	5.6e-14	51.2	0.0	7.8e-14	50.8	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF433)
HTH_20	PF12840.2	gi|385804452|ref|YP_005840852.1|	-	2.3e-05	24.0	0.0	3.7e-05	23.4	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|385804452|ref|YP_005840852.1|	-	0.0043	16.7	0.0	0.0067	16.1	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|385804452|ref|YP_005840852.1|	-	0.0078	15.8	0.1	0.014	15.0	0.1	1.3	1	0	0	1	1	1	1	MarR	family
Sigma70_r1_1	PF03979.9	gi|385804452|ref|YP_005840852.1|	-	0.043	13.7	0.0	1.7	8.5	0.0	2.1	1	1	1	2	2	2	0	Sigma-70	factor,	region	1.1
HTH_24	PF13412.1	gi|385804452|ref|YP_005840852.1|	-	0.057	12.8	0.0	0.11	11.8	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Bac_DNA_binding	PF00216.16	gi|385804452|ref|YP_005840852.1|	-	0.072	13.1	0.0	0.2	11.6	0.0	1.7	2	0	0	2	2	2	0	Bacterial	DNA-binding	protein
UPF0150	PF03681.10	gi|385804455|ref|YP_005840855.1|	-	2.4e-05	23.8	0.2	0.00016	21.2	0.0	2.3	2	1	0	2	2	2	1	Uncharacterised	protein	family	(UPF0150)
SH3_1	PF00018.23	gi|385804455|ref|YP_005840855.1|	-	0.022	14.1	0.1	0.051	12.9	0.0	1.6	1	0	0	1	1	1	0	SH3	domain
HTH_20	PF12840.2	gi|385804456|ref|YP_005840856.1|	-	0.00014	21.5	0.0	0.00019	21.1	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|385804456|ref|YP_005840856.1|	-	0.00021	21.1	0.0	0.00028	20.7	0.0	1.2	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_IclR	PF09339.5	gi|385804456|ref|YP_005840856.1|	-	0.00032	20.2	0.0	0.00043	19.8	0.0	1.1	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.1	gi|385804456|ref|YP_005840856.1|	-	0.00032	20.0	0.0	0.00044	19.5	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
FaeA	PF04703.7	gi|385804456|ref|YP_005840856.1|	-	0.00076	19.5	0.0	0.00089	19.3	0.0	1.1	1	0	0	1	1	1	1	FaeA-like	protein
TrmB	PF01978.14	gi|385804456|ref|YP_005840856.1|	-	0.00087	18.9	0.0	0.0011	18.6	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_30	PF13556.1	gi|385804456|ref|YP_005840856.1|	-	0.0012	18.4	0.0	0.0015	18.0	0.0	1.2	1	0	0	1	1	1	1	PucR	C-terminal	helix-turn-helix	domain
MarR_2	PF12802.2	gi|385804456|ref|YP_005840856.1|	-	0.0019	17.8	0.0	0.0027	17.3	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_10	PF04967.7	gi|385804456|ref|YP_005840856.1|	-	0.0025	17.3	0.0	0.004	16.7	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_AsnC-type	PF13404.1	gi|385804456|ref|YP_005840856.1|	-	0.0038	16.7	0.0	0.0056	16.1	0.0	1.2	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
MarR	PF01047.17	gi|385804456|ref|YP_005840856.1|	-	0.0039	16.8	0.0	0.005	16.5	0.0	1.1	1	0	0	1	1	1	1	MarR	family
HTH_1	PF00126.22	gi|385804456|ref|YP_005840856.1|	-	0.0039	16.8	0.0	0.0056	16.3	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_5	PF01022.15	gi|385804456|ref|YP_005840856.1|	-	0.026	14.2	0.0	0.03	13.9	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Penicillinase_R	PF03965.11	gi|385804456|ref|YP_005840856.1|	-	0.026	14.6	0.0	0.042	13.9	0.0	1.4	1	1	0	1	1	1	0	Penicillinase	repressor
HTH_8	PF02954.14	gi|385804456|ref|YP_005840856.1|	-	0.063	12.8	0.3	0.11	12.0	0.0	1.5	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	Fis	family
AstA	PF04958.7	gi|385804456|ref|YP_005840856.1|	-	0.13	10.6	0.0	0.14	10.5	0.0	1.1	1	0	0	1	1	1	0	Arginine	N-succinyltransferase	beta	subunit
Epimerase	PF01370.16	gi|385804457|ref|YP_005840857.1|	-	3.7e-21	75.6	0.0	7.4e-21	74.6	0.0	1.5	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Polysacc_synt_2	PF02719.10	gi|385804457|ref|YP_005840857.1|	-	9.9e-05	21.3	0.1	0.0029	16.5	0.0	2.3	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
adh_short	PF00106.20	gi|385804457|ref|YP_005840857.1|	-	0.00022	21.1	0.0	0.0004	20.3	0.0	1.4	1	0	0	1	1	1	1	short	chain	dehydrogenase
RmlD_sub_bind	PF04321.12	gi|385804457|ref|YP_005840857.1|	-	0.00029	19.8	0.2	0.03	13.2	0.1	3.1	2	2	0	2	2	2	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.14	gi|385804457|ref|YP_005840857.1|	-	0.0096	14.6	0.1	0.029	13.0	0.1	1.7	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
KR	PF08659.5	gi|385804457|ref|YP_005840857.1|	-	0.12	12.0	0.0	0.19	11.3	0.0	1.2	1	0	0	1	1	1	0	KR	domain
Epimerase	PF01370.16	gi|385804458|ref|YP_005840858.1|	-	1.2e-50	172.2	0.0	1.5e-50	171.8	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|385804458|ref|YP_005840858.1|	-	3.4e-31	107.9	0.0	4.5e-31	107.5	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.12	gi|385804458|ref|YP_005840858.1|	-	1.4e-18	66.8	0.1	1.7e-18	66.5	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_10	PF13460.1	gi|385804458|ref|YP_005840858.1|	-	4.8e-16	59.2	0.0	6.9e-16	58.7	0.0	1.2	1	0	0	1	1	1	1	NADH(P)-binding
Polysacc_synt_2	PF02719.10	gi|385804458|ref|YP_005840858.1|	-	2.9e-14	52.6	0.0	1.6e-13	50.2	0.0	1.9	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.7	gi|385804458|ref|YP_005840858.1|	-	5.3e-14	51.7	0.1	2.4e-13	49.6	0.0	1.8	1	1	0	1	1	1	1	Male	sterility	protein
adh_short	PF00106.20	gi|385804458|ref|YP_005840858.1|	-	4.1e-08	33.3	0.1	7.1e-08	32.5	0.1	1.3	1	0	0	1	1	1	1	short	chain	dehydrogenase
NmrA	PF05368.8	gi|385804458|ref|YP_005840858.1|	-	0.00023	20.5	0.0	0.00053	19.3	0.0	1.6	1	1	0	1	1	1	1	NmrA-like	family
KR	PF08659.5	gi|385804458|ref|YP_005840858.1|	-	0.00025	20.7	0.0	0.00039	20.1	0.0	1.4	1	0	0	1	1	1	1	KR	domain
Saccharop_dh	PF03435.13	gi|385804458|ref|YP_005840858.1|	-	0.0038	16.2	0.0	0.0059	15.6	0.0	1.2	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
AP_endonuc_2	PF01261.19	gi|385804458|ref|YP_005840858.1|	-	0.13	11.5	0.4	1.1	8.4	0.3	2.3	1	1	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
Epimerase	PF01370.16	gi|385804459|ref|YP_005840859.1|	-	4.4e-37	127.7	0.0	5.4e-37	127.4	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.12	gi|385804459|ref|YP_005840859.1|	-	1.7e-25	89.4	0.1	2.1e-25	89.2	0.1	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.14	gi|385804459|ref|YP_005840859.1|	-	7.8e-19	67.4	0.0	2.1e-18	66.0	0.0	1.6	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.10	gi|385804459|ref|YP_005840859.1|	-	2.1e-16	59.7	0.0	8e-16	57.7	0.0	2.0	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.7	gi|385804459|ref|YP_005840859.1|	-	3.7e-11	42.4	0.0	2.4e-08	33.2	0.0	2.3	2	0	0	2	2	2	2	Male	sterility	protein
NAD_binding_10	PF13460.1	gi|385804459|ref|YP_005840859.1|	-	4.2e-09	36.6	1.4	8e-09	35.7	0.1	2.1	2	1	0	2	2	2	1	NADH(P)-binding
Semialdhyde_dh	PF01118.19	gi|385804459|ref|YP_005840859.1|	-	2.2e-05	24.7	0.1	5e-05	23.6	0.0	1.6	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
DapB_N	PF01113.15	gi|385804459|ref|YP_005840859.1|	-	0.00035	20.4	0.5	0.00074	19.4	0.1	1.7	2	0	0	2	2	2	1	Dihydrodipicolinate	reductase,	N-terminus
adh_short	PF00106.20	gi|385804459|ref|YP_005840859.1|	-	0.00047	20.1	1.1	0.0015	18.4	0.9	1.8	2	0	0	2	2	2	1	short	chain	dehydrogenase
Saccharop_dh	PF03435.13	gi|385804459|ref|YP_005840859.1|	-	0.00086	18.3	0.3	0.0013	17.8	0.2	1.3	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
NmrA	PF05368.8	gi|385804459|ref|YP_005840859.1|	-	0.0011	18.3	0.3	0.0057	15.9	0.1	2.2	2	1	0	2	2	2	1	NmrA-like	family
Ldh_1_N	PF00056.18	gi|385804459|ref|YP_005840859.1|	-	0.003	17.3	0.1	0.0053	16.5	0.1	1.4	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.13	gi|385804459|ref|YP_005840859.1|	-	0.027	14.4	1.9	0.05	13.6	0.2	2.0	2	0	0	2	2	2	0	TrkA-N	domain
Epimerase_Csub	PF13950.1	gi|385804459|ref|YP_005840859.1|	-	0.054	13.4	0.0	0.12	12.3	0.0	1.6	1	0	0	1	1	1	0	UDP-glucose	4-epimerase	C-term	subunit
DUF1131	PF06572.7	gi|385804459|ref|YP_005840859.1|	-	0.11	11.9	0.0	0.22	10.9	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1131)
TrmB	PF01978.14	gi|385804460|ref|YP_005840860.1|	-	1.8e-18	65.9	0.1	5e-18	64.5	0.0	1.8	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|385804460|ref|YP_005840860.1|	-	0.00097	18.6	0.0	0.0022	17.5	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.1	gi|385804460|ref|YP_005840860.1|	-	0.0049	16.2	0.0	0.013	14.8	0.0	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.15	gi|385804460|ref|YP_005840860.1|	-	0.024	14.7	0.0	0.049	13.7	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
RHH_3	PF12651.2	gi|385804460|ref|YP_005840860.1|	-	0.073	12.8	0.5	8.6	6.1	0.0	2.9	3	0	0	3	3	3	0	Ribbon-helix-helix	domain
YaeQ	PF07152.7	gi|385804460|ref|YP_005840860.1|	-	0.1	11.8	0.0	0.37	10.1	0.0	1.8	2	1	1	3	3	3	0	YaeQ	protein
NTP_transferase	PF00483.18	gi|385804462|ref|YP_005840862.1|	-	6e-38	130.5	0.0	7.5e-38	130.2	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
Hexapep	PF00132.19	gi|385804462|ref|YP_005840862.1|	-	8e-14	50.4	15.7	2.1e-07	30.1	1.2	4.9	2	2	3	5	5	5	5	Bacterial	transferase	hexapeptide	(six	repeats)
NTP_transf_3	PF12804.2	gi|385804462|ref|YP_005840862.1|	-	9e-14	51.8	0.0	1.9e-13	50.8	0.0	1.6	2	0	0	2	2	2	1	MobA-like	NTP	transferase	domain
Hexapep_2	PF14602.1	gi|385804462|ref|YP_005840862.1|	-	2.5e-07	30.1	15.5	0.0008	18.9	0.9	4.3	3	1	0	3	3	3	2	Hexapeptide	repeat	of	succinyl-transferase
SIS	PF01380.17	gi|385804463|ref|YP_005840863.1|	-	8.4e-51	170.9	0.2	3.8e-28	97.7	0.1	2.3	2	0	0	2	2	2	2	SIS	domain
GATase_6	PF13522.1	gi|385804463|ref|YP_005840863.1|	-	6.5e-25	87.6	0.0	1.3e-24	86.6	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.1	gi|385804463|ref|YP_005840863.1|	-	6.4e-21	74.3	0.0	1.2e-20	73.4	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_2	PF00310.16	gi|385804463|ref|YP_005840863.1|	-	4.7e-19	68.3	0.1	6.3e-14	51.4	0.0	2.6	1	1	1	2	2	2	2	Glutamine	amidotransferases	class-II
GATase_4	PF13230.1	gi|385804463|ref|YP_005840863.1|	-	0.0026	16.4	0.0	0.0043	15.7	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
DUF4154	PF13689.1	gi|385804463|ref|YP_005840863.1|	-	0.0052	16.4	0.1	0.048	13.2	0.0	2.4	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF4154)
SIS_2	PF13580.1	gi|385804463|ref|YP_005840863.1|	-	0.0056	16.4	0.0	0.073	12.7	0.0	2.3	2	0	0	2	2	2	1	SIS	domain
NTP_transferase	PF00483.18	gi|385804465|ref|YP_005840865.1|	-	4e-40	137.6	0.0	5.5e-40	137.2	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|385804465|ref|YP_005840865.1|	-	7.9e-14	52.0	0.0	1.2e-13	51.3	0.0	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.19	gi|385804465|ref|YP_005840865.1|	-	9.4e-11	40.7	19.6	2.5e-06	26.7	1.4	4.5	2	1	2	4	4	4	4	Bacterial	transferase	hexapeptide	(six	repeats)
IspD	PF01128.14	gi|385804465|ref|YP_005840865.1|	-	0.012	15.1	0.0	0.017	14.6	0.0	1.3	1	0	0	1	1	1	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
TrmB	PF01978.14	gi|385804466|ref|YP_005840866.1|	-	2.9e-05	23.7	0.2	3.7e-05	23.3	0.1	1.1	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Sulfolobus_pRN	PF05584.6	gi|385804466|ref|YP_005840866.1|	-	0.0022	17.8	0.0	0.0028	17.5	0.0	1.1	1	0	0	1	1	1	1	Sulfolobus	plasmid	regulatory	protein
HTH_IclR	PF09339.5	gi|385804466|ref|YP_005840866.1|	-	0.0023	17.4	0.3	0.0029	17.1	0.2	1.2	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TFIIE_alpha	PF02002.12	gi|385804466|ref|YP_005840866.1|	-	0.0076	15.7	0.0	0.0087	15.5	0.0	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_20	PF12840.2	gi|385804466|ref|YP_005840866.1|	-	0.0083	15.9	0.2	0.0097	15.6	0.1	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Mga	PF08280.6	gi|385804466|ref|YP_005840866.1|	-	0.025	14.3	0.7	0.035	13.8	0.5	1.2	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
MarR	PF01047.17	gi|385804466|ref|YP_005840866.1|	-	0.032	13.9	0.2	0.038	13.6	0.1	1.2	1	0	0	1	1	1	0	MarR	family
PadR	PF03551.9	gi|385804466|ref|YP_005840866.1|	-	0.033	13.9	0.1	0.048	13.4	0.1	1.2	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.1	gi|385804466|ref|YP_005840866.1|	-	0.088	13.1	0.1	0.1	12.8	0.0	1.1	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_5	PF01022.15	gi|385804466|ref|YP_005840866.1|	-	0.12	12.0	0.2	0.17	11.5	0.1	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
FAD_binding_2	PF00890.19	gi|385804467|ref|YP_005840867.1|	-	2.8e-124	415.1	6.9	2.8e-124	415.1	4.8	1.8	2	0	0	2	2	2	1	FAD	binding	domain
Succ_DH_flav_C	PF02910.15	gi|385804467|ref|YP_005840867.1|	-	7e-39	132.6	0.4	1.1e-38	132.0	0.3	1.3	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
DAO	PF01266.19	gi|385804467|ref|YP_005840867.1|	-	7.5e-09	34.9	2.6	7.1e-07	28.4	1.7	2.3	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|385804467|ref|YP_005840867.1|	-	4.5e-07	29.9	12.5	3.2e-06	27.1	6.4	3.3	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|385804467|ref|YP_005840867.1|	-	0.00015	20.3	2.6	0.00017	20.1	0.7	1.9	3	0	0	3	3	3	1	HI0933-like	protein
Thi4	PF01946.12	gi|385804467|ref|YP_005840867.1|	-	0.00054	19.1	2.0	0.0033	16.5	0.3	2.5	3	0	0	3	3	3	1	Thi4	family
GIDA	PF01134.17	gi|385804467|ref|YP_005840867.1|	-	0.0019	17.1	3.6	0.0019	17.1	2.5	1.9	3	0	0	3	3	3	1	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.2	gi|385804467|ref|YP_005840867.1|	-	0.0036	16.4	7.1	0.0036	16.4	4.9	1.9	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
AlaDh_PNT_C	PF01262.16	gi|385804467|ref|YP_005840867.1|	-	0.0037	16.8	0.1	0.0086	15.6	0.1	1.5	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
FAD_binding_3	PF01494.14	gi|385804467|ref|YP_005840867.1|	-	0.0071	15.4	1.0	0.013	14.5	0.7	1.4	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_7	PF13241.1	gi|385804467|ref|YP_005840867.1|	-	0.022	15.0	0.0	0.052	13.8	0.0	1.7	1	0	0	1	1	1	0	Putative	NAD(P)-binding
Pyr_redox_3	PF13738.1	gi|385804467|ref|YP_005840867.1|	-	0.038	14.0	0.7	0.098	12.6	0.5	1.7	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|385804467|ref|YP_005840867.1|	-	0.045	13.7	0.5	0.18	11.8	0.3	2.1	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.22	gi|385804467|ref|YP_005840867.1|	-	0.095	13.1	2.0	0.22	11.9	0.7	2.1	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Fer2_3	PF13085.1	gi|385804468|ref|YP_005840868.1|	-	1.1e-33	115.3	1.1	3.2e-33	113.8	0.0	2.1	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_8	PF13183.1	gi|385804468|ref|YP_005840868.1|	-	2.3e-11	43.5	4.2	4.7e-11	42.5	2.9	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|385804468|ref|YP_005840868.1|	-	2.8e-06	27.5	3.9	7e-06	26.2	2.7	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|385804468|ref|YP_005840868.1|	-	1.3e-05	25.3	5.6	1.3e-05	25.3	3.9	2.0	2	1	0	2	2	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|385804468|ref|YP_005840868.1|	-	1.7e-05	25.0	5.5	7.7e-05	22.9	3.4	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|385804468|ref|YP_005840868.1|	-	5.8e-05	23.4	6.8	0.051	14.0	0.1	2.5	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|385804468|ref|YP_005840868.1|	-	0.00011	21.9	7.4	0.00026	20.7	5.1	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
YtkA	PF13115.1	gi|385804468|ref|YP_005840868.1|	-	0.005	17.1	1.1	0.012	15.9	0.0	2.2	3	0	0	3	3	3	1	YtkA-like
Fer4_2	PF12797.2	gi|385804468|ref|YP_005840868.1|	-	0.0065	16.3	8.3	0.011	15.6	0.8	2.6	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_20	PF14691.1	gi|385804468|ref|YP_005840868.1|	-	0.033	13.7	6.0	0.93	9.1	0.2	2.4	1	1	1	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_16	PF13484.1	gi|385804468|ref|YP_005840868.1|	-	0.11	13.2	9.5	1.1	10.0	1.8	2.6	1	1	2	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_6	PF12837.2	gi|385804468|ref|YP_005840868.1|	-	0.17	11.7	9.6	0.25	11.2	1.8	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4	PF00037.22	gi|385804468|ref|YP_005840868.1|	-	0.93	9.2	8.8	2.6	7.7	1.8	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|385804468|ref|YP_005840868.1|	-	1.5	9.3	14.1	1.3	9.5	1.6	2.7	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|385804468|ref|YP_005840868.1|	-	8.8	6.2	10.0	1.2e+02	2.5	7.0	2.4	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|385804468|ref|YP_005840868.1|	-	9.6	6.8	9.1	27	5.4	2.0	2.9	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
Sdh_cyt	PF01127.17	gi|385804469|ref|YP_005840869.1|	-	2.4e-11	43.5	7.7	2.8e-11	43.3	5.3	1.1	1	0	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
FA_hydroxylase	PF04116.8	gi|385804469|ref|YP_005840869.1|	-	0.065	13.6	5.5	0.086	13.2	3.8	1.4	1	1	0	1	1	1	0	Fatty	acid	hydroxylase	superfamily
7tm_3	PF00003.17	gi|385804469|ref|YP_005840869.1|	-	0.14	11.4	2.8	0.19	11.0	1.9	1.3	1	0	0	1	1	1	0	7	transmembrane	sweet-taste	receptor	of	3	GCPR
Colicin_V	PF02674.11	gi|385804469|ref|YP_005840869.1|	-	0.27	11.0	5.9	0.32	10.8	4.1	1.1	1	0	0	1	1	1	0	Colicin	V	production	protein
DUF3040	PF11239.3	gi|385804469|ref|YP_005840869.1|	-	4.6	7.3	6.4	7.3	6.7	1.6	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3040)
Sdh_cyt	PF01127.17	gi|385804470|ref|YP_005840870.1|	-	2.7e-22	78.8	4.9	3.1e-22	78.6	3.4	1.0	1	0	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
Ferric_reduct	PF01794.14	gi|385804470|ref|YP_005840870.1|	-	0.081	13.0	5.6	0.13	12.3	3.9	1.5	1	1	0	1	1	1	0	Ferric	reductase	like	transmembrane	component
BH4	PF02180.12	gi|385804470|ref|YP_005840870.1|	-	0.1	12.1	0.0	0.17	11.3	0.0	1.3	1	0	0	1	1	1	0	Bcl-2	homology	region	4
PgaD	PF13994.1	gi|385804470|ref|YP_005840870.1|	-	0.17	11.3	4.0	0.28	10.6	2.8	1.3	1	0	0	1	1	1	0	PgaD-like	protein
Tox-ODYAM1	PF15642.1	gi|385804470|ref|YP_005840870.1|	-	0.17	10.4	0.1	0.24	10.0	0.1	1.3	1	1	0	1	1	1	0	Toxin	in	Odyssella	and	Amoebophilus
TusA	PF01206.12	gi|385804472|ref|YP_005840872.1|	-	0.038	13.5	0.0	0.071	12.7	0.0	1.5	1	1	0	1	1	1	0	Sulfurtransferase	TusA
DUF4006	PF13179.1	gi|385804472|ref|YP_005840872.1|	-	0.076	12.5	0.6	6.9	6.3	0.0	2.4	2	1	0	2	2	2	0	Family	of	unknown	function	(DUF4006)
TOBE	PF03459.12	gi|385804472|ref|YP_005840872.1|	-	0.11	12.5	0.1	0.22	11.6	0.1	1.5	1	0	0	1	1	1	0	TOBE	domain
tRNA_anti-like	PF12869.2	gi|385804472|ref|YP_005840872.1|	-	0.39	10.1	5.4	0.36	10.3	0.1	2.7	2	1	1	3	3	3	0	tRNA_anti-like
DUF3753	PF12575.3	gi|385804472|ref|YP_005840872.1|	-	3.5	7.4	5.4	0.32	10.8	0.5	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3753)
SpoVR	PF04293.8	gi|385804474|ref|YP_005840874.1|	-	4.5e-85	285.5	7.0	1.5e-70	237.7	0.2	2.2	2	0	0	2	2	2	2	SpoVR	like	protein
DUF444	PF04285.7	gi|385804475|ref|YP_005840875.1|	-	1.4e-92	310.5	0.1	1.9e-92	310.1	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF444)
AAA_PrkA	PF08298.6	gi|385804476|ref|YP_005840876.1|	-	9.2e-14	50.8	0.0	7.7e-09	34.6	0.0	3.8	2	1	0	2	2	2	2	PrkA	AAA	domain
PrkA	PF06798.7	gi|385804476|ref|YP_005840876.1|	-	2.1e-09	37.0	1.2	4.7e-09	35.8	0.1	2.1	2	1	0	2	2	2	1	PrkA	serine	protein	kinase	C-terminal	domain
PrkA	PF06798.7	gi|385804477|ref|YP_005840877.1|	-	4.5e-79	265.3	5.2	8.8e-79	264.3	3.6	1.5	1	0	0	1	1	1	1	PrkA	serine	protein	kinase	C-terminal	domain
AAA_PrkA	PF08298.6	gi|385804477|ref|YP_005840877.1|	-	6.5e-66	222.4	0.0	1.1e-65	221.6	0.0	1.3	1	0	0	1	1	1	1	PrkA	AAA	domain
AAA_5	PF07728.9	gi|385804477|ref|YP_005840877.1|	-	0.028	14.1	0.4	3.1	7.5	0.3	2.7	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
RecX	PF02631.11	gi|385804477|ref|YP_005840877.1|	-	0.076	13.2	1.2	4.5	7.5	0.8	2.5	1	1	0	1	1	1	0	RecX	family
UPF0179	PF03684.8	gi|385804478|ref|YP_005840878.1|	-	2e-49	166.8	0.2	2.2e-49	166.7	0.1	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0179)
DDE_Tnp_1_6	PF13751.1	gi|385804478|ref|YP_005840878.1|	-	0.0018	18.2	0.3	0.014	15.3	0.0	2.1	2	0	0	2	2	2	1	Transposase	DDE	domain
AstE_AspA	PF04952.9	gi|385804479|ref|YP_005840879.1|	-	1e-14	54.1	0.0	2e-14	53.2	0.0	1.5	1	1	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
DUF309	PF03745.9	gi|385804480|ref|YP_005840880.1|	-	7.3e-14	50.9	0.2	1e-13	50.5	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF309)
RPE65	PF03055.10	gi|385804481|ref|YP_005840881.1|	-	1.3e-108	363.6	0.0	1.5e-108	363.4	0.0	1.0	1	0	0	1	1	1	1	Retinal	pigment	epithelial	membrane	protein
DUF3735	PF12537.3	gi|385804482|ref|YP_005840882.1|	-	0.084	12.9	0.0	0.39	10.8	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3735)
Amidohydro_1	PF01979.15	gi|385804483|ref|YP_005840883.1|	-	4.6e-22	79.1	0.5	5.8e-20	72.2	0.3	2.2	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_4	PF13147.1	gi|385804483|ref|YP_005840883.1|	-	1.5e-08	35.0	8.1	8.6e-08	32.5	5.6	2.5	1	1	0	1	1	1	1	Amidohydrolase
Amidohydro_5	PF13594.1	gi|385804483|ref|YP_005840883.1|	-	5.4e-07	29.3	0.1	1.2e-06	28.2	0.1	1.7	1	0	0	1	1	1	1	Amidohydrolase
A_deaminase	PF00962.17	gi|385804483|ref|YP_005840883.1|	-	4.6e-05	22.4	0.0	7.4e-05	21.8	0.0	1.2	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
Amidohydro_3	PF07969.6	gi|385804483|ref|YP_005840883.1|	-	0.016	14.4	7.3	0.26	10.4	0.3	3.0	1	1	2	3	3	3	0	Amidohydrolase	family
HD	PF01966.17	gi|385804484|ref|YP_005840884.1|	-	8.3e-11	41.9	0.6	1.9e-10	40.8	0.4	1.7	1	0	0	1	1	1	1	HD	domain
UPF0052	PF01933.13	gi|385804485|ref|YP_005840885.1|	-	4.4e-41	141.1	0.2	5.5e-41	140.8	0.1	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0052
Dus	PF01207.12	gi|385804486|ref|YP_005840886.1|	-	4.1e-05	22.5	1.3	0.00024	20.0	0.9	1.9	1	1	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
CitG	PF01874.11	gi|385804487|ref|YP_005840887.1|	-	6.9e-59	199.3	3.2	8.4e-59	199.0	2.2	1.0	1	0	0	1	1	1	1	ATP:dephospho-CoA	triphosphoribosyl	transferase
DUF447	PF04289.7	gi|385804488|ref|YP_005840888.1|	-	2.2e-35	121.8	0.0	2.1e-30	105.6	0.0	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF447)
Ribosomal_S17e	PF00833.13	gi|385804489|ref|YP_005840889.1|	-	1.5e-13	50.5	0.0	1.8e-13	50.3	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	S17
DUF4019	PF13211.1	gi|385804489|ref|YP_005840889.1|	-	0.026	14.7	0.0	0.028	14.6	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4019)
PemK	PF02452.12	gi|385804490|ref|YP_005840890.1|	-	0.0044	17.2	0.0	0.0052	16.9	0.0	1.1	1	0	0	1	1	1	1	PemK-like	protein
CRISPR_Cse2	PF09485.5	gi|385804490|ref|YP_005840890.1|	-	0.0063	16.5	0.2	0.0065	16.5	0.1	1.1	1	0	0	1	1	1	1	CRISPR-associated	protein	Cse2	(CRISPR_cse2)
GT36_AF	PF06205.6	gi|385804490|ref|YP_005840890.1|	-	0.1	12.3	0.1	0.18	11.5	0.1	1.3	1	0	0	1	1	1	0	Glycosyltransferase	36	associated	family
Carboxyl_trans	PF01039.17	gi|385804491|ref|YP_005840891.1|	-	3.5e-199	662.2	0.0	4e-199	662.0	0.0	1.0	1	0	0	1	1	1	1	Carboxyl	transferase	domain
MdcE	PF06833.6	gi|385804491|ref|YP_005840891.1|	-	0.0089	15.2	0.0	0.03	13.5	0.0	1.8	2	0	0	2	2	2	1	Malonate	decarboxylase	gamma	subunit	(MdcE)
Zn-ribbon_8	PF09723.5	gi|385804492|ref|YP_005840892.1|	-	0.0057	16.5	0.8	1.5	8.8	0.0	2.1	1	1	2	3	3	3	3	Zinc	ribbon	domain
Lar_restr_allev	PF14354.1	gi|385804492|ref|YP_005840892.1|	-	0.018	15.3	0.2	0.025	14.8	0.1	1.2	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
DUF951	PF06107.6	gi|385804492|ref|YP_005840892.1|	-	0.029	13.8	0.2	0.037	13.5	0.1	1.2	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF951)
zf-Di19	PF05605.7	gi|385804492|ref|YP_005840892.1|	-	0.041	13.9	0.7	0.079	13.0	0.5	1.4	1	1	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C4pol	PF14260.1	gi|385804492|ref|YP_005840892.1|	-	0.056	13.4	1.0	1.5	8.8	0.7	2.0	1	1	1	2	2	2	0	C4-type	zinc-finger	of	DNA	polymerase	delta
zinc_ribbon_2	PF13240.1	gi|385804492|ref|YP_005840892.1|	-	0.081	12.4	0.3	6	6.4	0.0	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.2	gi|385804492|ref|YP_005840892.1|	-	0.096	12.5	1.2	0.21	11.4	0.8	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
Rubredoxin	PF00301.15	gi|385804492|ref|YP_005840892.1|	-	0.1	12.5	1.2	0.21	11.5	0.8	1.6	1	1	0	1	1	1	0	Rubredoxin
zf-ribbon_3	PF13248.1	gi|385804492|ref|YP_005840892.1|	-	0.18	11.0	2.3	2	7.7	1.6	2.0	1	1	0	1	1	1	0	zinc-ribbon	domain
AhpC-TSA	PF00578.16	gi|385804493|ref|YP_005840893.1|	-	2.1e-31	108.1	0.0	2.5e-31	107.9	0.0	1.0	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|385804493|ref|YP_005840893.1|	-	2e-21	76.0	0.0	2.3e-21	75.8	0.0	1.0	1	0	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.1	gi|385804493|ref|YP_005840893.1|	-	0.0024	17.7	0.0	0.15	12.0	0.0	2.1	2	0	0	2	2	2	1	AhpC/TSA	antioxidant	enzyme
DUF899	PF05988.7	gi|385804493|ref|YP_005840893.1|	-	0.012	15.0	0.0	0.016	14.6	0.0	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF899)
AdoMet_dc	PF02675.10	gi|385804493|ref|YP_005840893.1|	-	0.15	11.9	0.0	0.23	11.3	0.0	1.2	1	0	0	1	1	1	0	S-adenosylmethionine	decarboxylase
ILVD_EDD	PF00920.16	gi|385804494|ref|YP_005840894.1|	-	3.2e-208	692.3	3.5	3.6e-208	692.2	2.4	1.0	1	0	0	1	1	1	1	Dehydratase	family
MoCF_biosynth	PF00994.19	gi|385804495|ref|YP_005840895.1|	-	1.7e-27	95.5	1.0	2.4e-27	95.0	0.7	1.1	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
TIM-br_sig_trns	PF09370.5	gi|385804495|ref|YP_005840895.1|	-	0.033	13.2	0.6	0.047	12.7	0.4	1.1	1	0	0	1	1	1	0	TIM-barrel	signal	transduction	protein
Kinase-PPPase	PF03618.9	gi|385804495|ref|YP_005840895.1|	-	0.046	13.2	0.4	0.061	12.8	0.3	1.2	1	0	0	1	1	1	0	Kinase/pyrophosphorylase
HTH_5	PF01022.15	gi|385804496|ref|YP_005840896.1|	-	6.6e-05	22.5	0.0	0.00012	21.6	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_45	PF14947.1	gi|385804496|ref|YP_005840896.1|	-	0.00014	21.5	0.1	0.00026	20.7	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_20	PF12840.2	gi|385804496|ref|YP_005840896.1|	-	0.0083	15.9	0.0	0.019	14.7	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|385804496|ref|YP_005840896.1|	-	0.01	15.4	0.0	0.019	14.6	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.7	gi|385804496|ref|YP_005840896.1|	-	0.02	14.5	0.0	0.043	13.4	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
MarR_2	PF12802.2	gi|385804496|ref|YP_005840896.1|	-	0.031	13.9	0.0	0.063	12.9	0.0	1.4	1	0	0	1	1	1	0	MarR	family
GntR	PF00392.16	gi|385804496|ref|YP_005840896.1|	-	0.073	12.5	0.0	0.14	11.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_Crp_2	PF13545.1	gi|385804496|ref|YP_005840896.1|	-	0.097	12.4	0.1	0.43	10.4	0.0	2.1	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|385804496|ref|YP_005840896.1|	-	0.14	12.1	0.0	0.58	10.1	0.0	1.9	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_36	PF13730.1	gi|385804496|ref|YP_005840896.1|	-	0.16	12.1	0.0	0.34	11.0	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
ADH_zinc_N	PF00107.21	gi|385804497|ref|YP_005840897.1|	-	1.1e-38	131.6	0.0	2e-38	130.9	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|385804497|ref|YP_005840897.1|	-	1.4e-21	77.7	0.0	3.1e-21	76.5	0.0	1.6	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.7	gi|385804497|ref|YP_005840897.1|	-	6.9e-20	70.8	0.0	1.4e-19	69.8	0.0	1.5	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
DapB_N	PF01113.15	gi|385804497|ref|YP_005840897.1|	-	0.0018	18.2	0.1	0.0035	17.2	0.1	1.6	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
NAD_binding_10	PF13460.1	gi|385804497|ref|YP_005840897.1|	-	0.0065	16.4	0.1	0.01	15.8	0.1	1.4	1	0	0	1	1	1	1	NADH(P)-binding
Eno-Rase_NADH_b	PF12242.3	gi|385804497|ref|YP_005840897.1|	-	0.012	15.3	0.2	0.027	14.2	0.1	1.5	1	0	0	1	1	1	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
AlaDh_PNT_C	PF01262.16	gi|385804497|ref|YP_005840897.1|	-	0.015	14.9	0.3	0.032	13.8	0.0	1.6	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Semialdhyde_dh	PF01118.19	gi|385804497|ref|YP_005840897.1|	-	0.052	13.8	0.2	0.092	13.0	0.2	1.4	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
DUF2493	PF10686.4	gi|385804497|ref|YP_005840897.1|	-	0.1	12.1	1.0	0.21	11.1	0.5	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2493)
Presenilin	PF01080.12	gi|385804498|ref|YP_005840898.1|	-	0.13	11.0	1.5	0.16	10.8	1.0	1.0	1	0	0	1	1	1	0	Presenilin
eRF1_2	PF03464.10	gi|385804500|ref|YP_005840900.1|	-	0.00017	21.9	0.0	0.00038	20.8	0.0	1.6	1	0	0	1	1	1	1	eRF1	domain	2
Laminin_II	PF06009.7	gi|385804500|ref|YP_005840900.1|	-	0.0022	17.7	3.5	0.0065	16.2	2.4	1.7	1	0	0	1	1	1	1	Laminin	Domain	II
Tropomyosin_1	PF12718.2	gi|385804500|ref|YP_005840900.1|	-	0.0069	16.2	13.7	0.0091	15.8	6.3	2.2	2	0	0	2	2	2	1	Tropomyosin	like
Mnd1	PF03962.10	gi|385804500|ref|YP_005840900.1|	-	0.01	15.4	10.1	0.01	15.4	7.0	1.7	2	0	0	2	2	2	0	Mnd1	family
TMF_DNA_bd	PF12329.3	gi|385804500|ref|YP_005840900.1|	-	0.053	13.3	13.0	0.14	12.0	9.0	1.7	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
GAS	PF13851.1	gi|385804500|ref|YP_005840900.1|	-	0.069	12.3	10.1	0.019	14.1	4.6	1.7	2	0	0	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
Fmp27_WPPW	PF10359.4	gi|385804500|ref|YP_005840900.1|	-	0.1	10.9	9.3	0.027	12.9	3.8	1.7	2	0	0	2	2	2	0	RNA	pol	II	promoter	Fmp27	protein	domain
DivIC	PF04977.10	gi|385804500|ref|YP_005840900.1|	-	0.1	12.0	11.8	0.23	10.9	2.1	2.5	1	1	1	2	2	2	0	Septum	formation	initiator
TACC	PF05010.9	gi|385804500|ref|YP_005840900.1|	-	0.11	12.2	6.2	0.049	13.3	2.4	1.7	2	0	0	2	2	2	0	Transforming	acidic	coiled-coil-containing	protein	(TACC)
ERM	PF00769.14	gi|385804500|ref|YP_005840900.1|	-	0.21	11.0	14.9	0.034	13.6	6.9	1.9	2	0	0	2	2	2	0	Ezrin/radixin/moesin	family
Herpes_UL36	PF03586.8	gi|385804500|ref|YP_005840900.1|	-	0.65	9.0	0.0	0.65	9.0	0.0	2.3	2	1	0	2	2	2	0	Herpesvirus	UL36	tegument	protein
CALCOCO1	PF07888.6	gi|385804500|ref|YP_005840900.1|	-	1.2	7.3	12.1	0.61	8.3	5.6	1.9	2	0	0	2	2	2	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
Baculo_PEP_C	PF04513.7	gi|385804500|ref|YP_005840900.1|	-	1.2	8.9	4.2	2.7	7.7	0.9	2.6	3	0	0	3	3	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
AAA_13	PF13166.1	gi|385804500|ref|YP_005840900.1|	-	1.3	7.3	6.9	0.21	10.0	2.3	1.3	2	0	0	2	2	2	0	AAA	domain
Tropomyosin	PF00261.15	gi|385804500|ref|YP_005840900.1|	-	1.8	7.6	20.6	0.15	11.1	8.7	2.1	2	0	0	2	2	2	0	Tropomyosin
IncA	PF04156.9	gi|385804500|ref|YP_005840900.1|	-	2	8.0	18.3	0.16	11.5	8.6	2.0	2	0	0	2	2	2	0	IncA	protein
Transposase_22	PF02994.9	gi|385804500|ref|YP_005840900.1|	-	2	6.8	10.4	0.2	10.1	4.2	1.4	2	0	0	2	2	2	0	L1	transposable	element
Ax_dynein_light	PF10211.4	gi|385804500|ref|YP_005840900.1|	-	2.1	8.1	16.3	6.6	6.5	5.3	3.0	2	1	1	3	3	3	0	Axonemal	dynein	light	chain
DUF342	PF03961.8	gi|385804500|ref|YP_005840900.1|	-	2.2	6.5	7.8	0.3	9.4	2.6	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF342)
DUF4407	PF14362.1	gi|385804500|ref|YP_005840900.1|	-	2.5	6.9	9.4	1.8	7.4	4.7	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
CENP-F_leu_zip	PF10473.4	gi|385804500|ref|YP_005840900.1|	-	2.9	7.7	19.0	1.5	8.6	4.6	2.9	2	1	1	3	3	3	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
TSC22	PF01166.13	gi|385804500|ref|YP_005840900.1|	-	4.3	7.3	9.0	9.7	6.2	1.5	2.6	2	0	0	2	2	2	0	TSC-22/dip/bun	family
APG6	PF04111.7	gi|385804500|ref|YP_005840900.1|	-	6.5	5.6	13.4	0.74	8.7	6.2	1.6	2	0	0	2	2	2	0	Autophagy	protein	Apg6
FadA	PF09403.5	gi|385804500|ref|YP_005840900.1|	-	7.8	6.5	12.8	8.8	6.3	7.0	2.1	2	0	0	2	2	2	0	Adhesion	protein	FadA
PspA_IM30	PF04012.7	gi|385804502|ref|YP_005840902.1|	-	3.2e-33	114.9	31.9	3.2e-33	114.9	22.1	1.4	2	0	0	2	2	2	1	PspA/IM30	family
MAD	PF05557.8	gi|385804502|ref|YP_005840902.1|	-	0.00074	17.7	26.0	0.0012	17.0	18.0	1.3	1	0	0	1	1	1	1	Mitotic	checkpoint	protein
Snf7	PF03357.16	gi|385804502|ref|YP_005840902.1|	-	0.0023	17.3	16.8	0.0023	17.3	11.6	3.3	1	1	2	3	3	3	2	Snf7
Spc7	PF08317.6	gi|385804502|ref|YP_005840902.1|	-	0.0027	16.4	23.6	0.0027	16.4	16.3	2.2	1	1	1	2	2	2	1	Spc7	kinetochore	protein
ERM	PF00769.14	gi|385804502|ref|YP_005840902.1|	-	0.003	17.1	38.7	0.003	17.1	26.8	1.6	1	1	1	2	2	2	1	Ezrin/radixin/moesin	family
DUF4200	PF13863.1	gi|385804502|ref|YP_005840902.1|	-	0.042	13.8	35.9	0.26	11.2	3.7	3.8	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4200)
AAA_13	PF13166.1	gi|385804502|ref|YP_005840902.1|	-	0.044	12.2	24.1	0.021	13.3	15.0	1.6	1	1	0	1	1	1	0	AAA	domain
WXG100	PF06013.7	gi|385804502|ref|YP_005840902.1|	-	0.055	13.4	18.6	0.3	11.1	3.5	3.0	2	1	1	3	3	3	0	Proteins	of	100	residues	with	WXG
DUF972	PF06156.8	gi|385804502|ref|YP_005840902.1|	-	0.11	12.9	29.3	0.41	11.0	6.7	3.6	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF972)
STAT_alpha	PF01017.15	gi|385804502|ref|YP_005840902.1|	-	0.12	12.1	19.2	0.72	9.5	2.2	3.1	1	1	1	3	3	3	0	STAT	protein,	all-alpha	domain
DUF3584	PF12128.3	gi|385804502|ref|YP_005840902.1|	-	0.18	9.0	33.4	0.09	10.1	21.9	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
IncA	PF04156.9	gi|385804502|ref|YP_005840902.1|	-	0.24	10.9	33.9	1.4	8.5	4.9	3.1	1	1	2	3	3	3	0	IncA	protein
DUF3810	PF12725.2	gi|385804502|ref|YP_005840902.1|	-	0.37	9.6	14.0	0.022	13.6	2.5	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3810)
TBPIP	PF07106.8	gi|385804502|ref|YP_005840902.1|	-	0.48	9.9	28.7	0.96	8.9	4.7	3.3	1	1	2	3	3	3	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
Baculo_PEP_C	PF04513.7	gi|385804502|ref|YP_005840902.1|	-	0.56	10.0	9.1	13	5.6	0.1	3.3	1	1	1	3	3	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF3450	PF11932.3	gi|385804502|ref|YP_005840902.1|	-	0.72	9.0	26.2	2.1	7.5	7.1	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3450)
DUF948	PF06103.6	gi|385804502|ref|YP_005840902.1|	-	0.9	9.4	14.7	11	5.9	1.8	4.2	2	1	1	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF948)
Snapin_Pallidin	PF14712.1	gi|385804502|ref|YP_005840902.1|	-	1.4	9.2	17.8	0.16	12.3	3.3	2.9	1	1	1	2	2	2	0	Snapin/Pallidin
Dor1	PF04124.7	gi|385804502|ref|YP_005840902.1|	-	1.6	7.1	16.6	2.4	6.5	9.8	2.0	1	1	1	2	2	2	0	Dor1-like	family
ATG_C	PF09333.6	gi|385804502|ref|YP_005840902.1|	-	2.7	8.2	8.9	2.6	8.2	0.2	3.1	1	1	2	3	3	3	0	ATG	C	terminal	domain
DUF342	PF03961.8	gi|385804502|ref|YP_005840902.1|	-	2.7	6.2	22.8	2.4	6.4	10.9	2.4	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF342)
FlaC_arch	PF05377.6	gi|385804502|ref|YP_005840902.1|	-	3.1	7.7	21.3	4.4	7.2	1.6	5.3	5	1	1	6	6	6	0	Flagella	accessory	protein	C	(FlaC)
TPR_MLP1_2	PF07926.7	gi|385804502|ref|YP_005840902.1|	-	4.5	7.0	39.2	3.4	7.4	18.0	3.5	1	1	3	4	4	4	0	TPR/MLP1/MLP2-like	protein
YlqD	PF11068.3	gi|385804502|ref|YP_005840902.1|	-	5.1	7.1	29.7	1.2	9.1	11.1	3.1	2	1	1	3	3	3	0	YlqD	protein
Bacillus_HBL	PF05791.6	gi|385804502|ref|YP_005840902.1|	-	6.9	5.9	15.7	5.4	6.3	1.4	2.5	1	1	1	2	2	2	0	Bacillus	haemolytic	enterotoxin	(HBL)
V_ATPase_I	PF01496.14	gi|385804502|ref|YP_005840902.1|	-	7.4	4.2	24.7	14	3.3	15.5	2.2	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
Abhydrolase_5	PF12695.2	gi|385804503|ref|YP_005840903.1|	-	2.6e-09	36.9	0.0	3.7e-09	36.4	0.0	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_6	PF12697.2	gi|385804503|ref|YP_005840903.1|	-	7.2e-07	29.3	0.1	0.029	14.2	0.0	2.2	1	1	1	2	2	2	2	Alpha/beta	hydrolase	family
DLH	PF01738.13	gi|385804503|ref|YP_005840903.1|	-	1.2e-06	27.9	0.0	1.6e-06	27.5	0.0	1.1	1	0	0	1	1	1	1	Dienelactone	hydrolase	family
BAAT_C	PF08840.6	gi|385804503|ref|YP_005840903.1|	-	0.0054	16.4	0.0	0.012	15.3	0.0	1.5	1	1	1	2	2	2	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Thioesterase	PF00975.15	gi|385804503|ref|YP_005840903.1|	-	0.014	15.5	0.2	0.12	12.5	0.1	2.0	2	0	0	2	2	2	0	Thioesterase	domain
Abhydrolase_2	PF02230.11	gi|385804503|ref|YP_005840903.1|	-	0.021	14.2	0.0	0.036	13.4	0.0	1.4	1	0	0	1	1	1	0	Phospholipase/Carboxylesterase
Peptidase_S15	PF02129.13	gi|385804503|ref|YP_005840903.1|	-	0.032	13.6	0.1	0.047	13.1	0.0	1.2	1	0	0	1	1	1	0	X-Pro	dipeptidyl-peptidase	(S15	family)
FSH1	PF03959.8	gi|385804503|ref|YP_005840903.1|	-	0.035	13.5	0.1	0.17	11.3	0.1	2.0	1	1	0	1	1	1	0	Serine	hydrolase	(FSH1)
DUF3209	PF11483.3	gi|385804504|ref|YP_005840904.1|	-	9.6e-63	209.9	4.1	1.1e-62	209.8	2.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3209)
HWE_HK	PF07536.9	gi|385804504|ref|YP_005840904.1|	-	0.012	16.0	0.7	0.45	10.9	0.1	2.5	1	1	1	2	2	2	0	HWE	histidine	kinase
Syntaxin-6_N	PF09177.6	gi|385804504|ref|YP_005840904.1|	-	0.12	12.8	0.1	0.19	12.1	0.1	1.5	1	1	0	1	1	1	0	Syntaxin	6,	N-terminal
CbiX	PF01903.12	gi|385804505|ref|YP_005840905.1|	-	8.5e-43	144.7	0.0	8.5e-22	77.2	0.1	2.4	2	0	0	2	2	2	2	CbiX
2Fe-2S_thioredx	PF01257.14	gi|385804505|ref|YP_005840905.1|	-	7.2e-09	35.3	0.2	1.3e-08	34.5	0.1	1.3	1	0	0	1	1	1	1	Thioredoxin-like	[2Fe-2S]	ferredoxin
CbiK	PF06180.6	gi|385804505|ref|YP_005840905.1|	-	5.7e-05	22.3	0.0	0.23	10.4	0.0	2.1	1	1	1	2	2	2	2	Cobalt	chelatase	(CbiK)
Suc_Fer-like	PF06999.7	gi|385804505|ref|YP_005840905.1|	-	0.054	13.4	0.0	0.21	11.5	0.0	2.0	2	0	0	2	2	2	0	Sucrase/ferredoxin-like
DUF1636	PF07845.6	gi|385804505|ref|YP_005840905.1|	-	0.065	13.4	0.5	0.31	11.3	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1636)
Guanylin	PF02058.10	gi|385804505|ref|YP_005840905.1|	-	0.12	12.4	0.3	0.25	11.4	0.2	1.6	1	0	0	1	1	1	0	Guanylin	precursor
LAGLIDADG_3	PF14528.1	gi|385804506|ref|YP_005840906.1|	-	0.075	13.2	0.0	2.1	8.6	0.0	2.7	3	0	0	3	3	3	0	LAGLIDADG-like	domain
TP_methylase	PF00590.15	gi|385804507|ref|YP_005840907.1|	-	4.9e-36	124.4	0.2	6.3e-36	124.0	0.2	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
DUF236	PF03057.9	gi|385804507|ref|YP_005840907.1|	-	0.073	13.0	2.2	0.13	12.2	0.0	2.1	1	1	0	2	2	2	0	Protein	of	unknown	function
TP_methylase	PF00590.15	gi|385804508|ref|YP_005840908.1|	-	1.8e-41	142.1	0.1	2.4e-41	141.7	0.1	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
CbiG_N	PF11760.3	gi|385804509|ref|YP_005840909.1|	-	2.7e-20	71.8	0.0	4.5e-19	67.9	0.0	2.7	2	0	0	2	2	2	1	Cobalamin	synthesis	G	N-terminal
Asparaginase_2	PF01112.13	gi|385804510|ref|YP_005840910.1|	-	3.8e-39	134.2	11.2	8.2e-39	133.1	7.8	1.5	1	1	0	1	1	1	1	Asparaginase
Usp	PF00582.21	gi|385804513|ref|YP_005840913.1|	-	8e-16	58.4	0.0	1.2e-15	57.9	0.0	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
UPF0118	PF01594.11	gi|385804514|ref|YP_005840914.1|	-	1.2e-24	86.8	30.2	1.6e-24	86.5	20.9	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF20
MobB	PF03205.9	gi|385804516|ref|YP_005840916.1|	-	8.6e-21	74.1	0.0	1.1e-20	73.7	0.0	1.2	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_22	PF13401.1	gi|385804516|ref|YP_005840916.1|	-	0.0002	21.4	0.0	0.00038	20.6	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|385804516|ref|YP_005840916.1|	-	0.0031	18.3	0.0	0.0089	16.8	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|385804516|ref|YP_005840916.1|	-	0.004	16.6	0.0	0.06	12.8	0.0	2.2	2	1	0	2	2	2	1	FtsK/SpoIIIE	family
MMR_HSR1	PF01926.18	gi|385804516|ref|YP_005840916.1|	-	0.0052	16.7	0.0	0.0073	16.2	0.0	1.3	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
Arch_ATPase	PF01637.13	gi|385804516|ref|YP_005840916.1|	-	0.006	16.2	0.0	0.0088	15.7	0.0	1.2	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_26	PF13500.1	gi|385804516|ref|YP_005840916.1|	-	0.0071	15.9	0.0	0.0098	15.5	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
ABC_tran	PF00005.22	gi|385804516|ref|YP_005840916.1|	-	0.0097	16.2	0.0	0.011	15.9	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
PPV_E1_C	PF00519.12	gi|385804516|ref|YP_005840916.1|	-	0.011	14.3	0.0	0.015	13.9	0.0	1.1	1	0	0	1	1	1	0	Papillomavirus	helicase
AAA_16	PF13191.1	gi|385804516|ref|YP_005840916.1|	-	0.012	15.6	0.0	0.024	14.6	0.0	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
ATP_bind_1	PF03029.12	gi|385804516|ref|YP_005840916.1|	-	0.013	15.0	0.1	0.021	14.3	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_33	PF13671.1	gi|385804516|ref|YP_005840916.1|	-	0.013	15.3	0.1	0.038	13.8	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_14	PF13173.1	gi|385804516|ref|YP_005840916.1|	-	0.022	14.6	0.0	0.033	14.1	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
GTP_EFTU	PF00009.22	gi|385804516|ref|YP_005840916.1|	-	0.025	13.9	0.1	0.032	13.6	0.1	1.4	1	1	0	1	1	1	0	Elongation	factor	Tu	GTP	binding	domain
AAA_21	PF13304.1	gi|385804516|ref|YP_005840916.1|	-	0.026	14.4	0.0	0.031	14.2	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
Pox_A32	PF04665.7	gi|385804516|ref|YP_005840916.1|	-	0.034	13.4	0.0	0.18	11.0	0.0	1.8	2	0	0	2	2	2	0	Poxvirus	A32	protein
RNA_helicase	PF00910.17	gi|385804516|ref|YP_005840916.1|	-	0.04	14.0	0.0	0.053	13.6	0.0	1.4	1	1	0	1	1	1	0	RNA	helicase
Dynamin_N	PF00350.18	gi|385804516|ref|YP_005840916.1|	-	0.043	13.6	0.1	0.11	12.2	0.0	1.6	1	1	0	2	2	2	0	Dynamin	family
AAA_29	PF13555.1	gi|385804516|ref|YP_005840916.1|	-	0.048	13.2	0.0	0.1	12.1	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
DUF463	PF04317.7	gi|385804516|ref|YP_005840916.1|	-	0.053	12.0	0.0	0.079	11.5	0.0	1.2	1	0	0	1	1	1	0	YcjX-like	family,	DUF463
SRPRB	PF09439.5	gi|385804516|ref|YP_005840916.1|	-	0.058	12.6	0.0	0.074	12.2	0.0	1.4	1	1	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
T2SE	PF00437.15	gi|385804516|ref|YP_005840916.1|	-	0.065	12.1	0.0	0.1	11.5	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
Miro	PF08477.8	gi|385804516|ref|YP_005840916.1|	-	0.073	13.5	0.0	0.1	13.0	0.0	1.4	1	0	0	1	1	1	0	Miro-like	protein
NACHT	PF05729.7	gi|385804516|ref|YP_005840916.1|	-	0.078	12.6	0.0	0.13	11.9	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
AAA_23	PF13476.1	gi|385804516|ref|YP_005840916.1|	-	0.091	13.0	0.0	0.11	12.7	0.0	1.2	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.1	gi|385804516|ref|YP_005840916.1|	-	0.099	12.0	0.0	0.18	11.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
SRP1_TIP1	PF00660.12	gi|385804516|ref|YP_005840916.1|	-	0.14	11.9	0.0	0.23	11.3	0.0	1.3	1	0	0	1	1	1	0	Seripauperin	and	TIP1	family
Septin	PF00735.13	gi|385804516|ref|YP_005840916.1|	-	0.14	11.0	0.0	0.17	10.8	0.0	1.2	1	0	0	1	1	1	0	Septin
MarR_2	PF12802.2	gi|385804517|ref|YP_005840917.1|	-	0.0026	17.3	0.1	0.0079	15.8	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.5	gi|385804517|ref|YP_005840917.1|	-	0.022	14.3	0.2	0.086	12.4	0.0	2.1	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HemN_C	PF06969.11	gi|385804517|ref|YP_005840917.1|	-	0.024	14.6	0.1	1.5	8.9	0.0	2.5	2	0	0	2	2	2	0	HemN	C-terminal	domain
HTH_27	PF13463.1	gi|385804517|ref|YP_005840917.1|	-	0.094	13.0	0.1	0.28	11.5	0.0	1.9	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF1724	PF08350.5	gi|385804517|ref|YP_005840917.1|	-	0.095	12.2	0.0	0.19	11.3	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1724)
HTH_24	PF13412.1	gi|385804517|ref|YP_005840917.1|	-	0.11	11.9	0.0	0.29	10.5	0.0	1.8	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|385804517|ref|YP_005840917.1|	-	0.14	11.8	0.0	0.34	10.6	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
EamA	PF00892.15	gi|385804518|ref|YP_005840918.1|	-	1.2e-35	122.2	34.6	4.3e-19	68.8	5.3	2.2	2	0	0	2	2	2	2	EamA-like	transporter	family
EmrE	PF13536.1	gi|385804518|ref|YP_005840918.1|	-	1.8e-07	31.3	5.7	1.8e-07	31.3	3.9	3.8	1	1	3	4	4	4	3	Multidrug	resistance	efflux	transporter
TPT	PF03151.11	gi|385804518|ref|YP_005840918.1|	-	0.063	12.9	21.1	0.14	11.7	1.5	2.7	2	1	0	2	2	2	0	Triose-phosphate	Transporter	family
Gate	PF07670.9	gi|385804519|ref|YP_005840919.1|	-	1e-08	35.0	17.3	1.6e-05	24.7	2.1	2.7	2	1	0	2	2	2	2	Nucleoside	recognition
RNA_binding	PF01877.12	gi|385804520|ref|YP_005840920.1|	-	7e-26	90.5	0.6	9.8e-26	90.1	0.4	1.2	1	0	0	1	1	1	1	RNA	binding
Auxin_BP	PF02041.11	gi|385804520|ref|YP_005840920.1|	-	0.045	13.1	0.1	0.053	12.9	0.1	1.2	1	0	0	1	1	1	0	Auxin	binding	protein
AAA_18	PF13238.1	gi|385804521|ref|YP_005840921.1|	-	5.9e-12	46.0	0.1	8.6e-12	45.4	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|385804521|ref|YP_005840921.1|	-	4.5e-10	40.3	0.2	7.3e-10	39.7	0.1	1.3	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|385804521|ref|YP_005840921.1|	-	4.5e-08	33.0	0.0	6.8e-08	32.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
SKI	PF01202.17	gi|385804521|ref|YP_005840921.1|	-	0.0022	17.9	0.1	0.0091	15.8	0.0	1.8	1	1	0	1	1	1	1	Shikimate	kinase
CoaE	PF01121.15	gi|385804521|ref|YP_005840921.1|	-	0.0028	17.1	0.2	1.4	8.2	0.0	2.2	2	0	0	2	2	2	2	Dephospho-CoA	kinase
Cytidylate_kin2	PF13189.1	gi|385804521|ref|YP_005840921.1|	-	0.003	17.5	0.2	0.099	12.5	0.1	2.2	1	1	0	1	1	1	1	Cytidylate	kinase-like	family
ADK	PF00406.17	gi|385804521|ref|YP_005840921.1|	-	0.029	14.2	0.1	0.058	13.2	0.1	1.7	1	1	0	1	1	1	0	Adenylate	kinase
PEP-utilizers	PF00391.18	gi|385804521|ref|YP_005840921.1|	-	0.062	12.8	0.2	0.16	11.5	0.2	1.8	1	1	0	1	1	1	0	PEP-utilising	enzyme,	mobile	domain
Cpn60_TCP1	PF00118.19	gi|385804522|ref|YP_005840922.1|	-	3.6e-166	553.5	4.2	4.1e-166	553.3	2.9	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
DICT	PF10069.4	gi|385804523|ref|YP_005840923.1|	-	1.8e-20	72.7	0.0	3e-20	72.0	0.0	1.3	1	0	0	1	1	1	1	Sensory	domain	found	in	DIguanylate	Cyclases	&	Two-component	systems
PRAI	PF00697.17	gi|385804523|ref|YP_005840923.1|	-	0.14	11.6	0.0	0.22	11.0	0.0	1.2	1	0	0	1	1	1	0	N-(5'phosphoribosyl)anthranilate	(PRA)	isomerase
KH_1	PF00013.24	gi|385804524|ref|YP_005840924.1|	-	1.2e-16	60.1	4.6	8.7e-09	34.9	0.2	2.2	2	0	0	2	2	2	2	KH	domain
KH_3	PF13014.1	gi|385804524|ref|YP_005840924.1|	-	1.3e-08	34.2	1.2	0.00016	21.2	0.1	2.5	2	0	0	2	2	2	2	KH	domain
KH_2	PF07650.12	gi|385804524|ref|YP_005840924.1|	-	1e-05	25.0	2.3	0.0023	17.4	0.0	2.4	2	1	0	2	2	2	2	KH	domain
KH_4	PF13083.1	gi|385804524|ref|YP_005840924.1|	-	0.0053	16.3	0.7	2.7	7.6	0.3	2.8	2	1	0	2	2	2	2	KH	domain
CRCB	PF02537.10	gi|385804525|ref|YP_005840925.1|	-	3.4e-23	81.7	5.9	3.8e-23	81.5	4.1	1.0	1	0	0	1	1	1	1	CrcB-like	protein
DUF389	PF04087.9	gi|385804525|ref|YP_005840925.1|	-	2.1	8.2	9.3	9.4	6.1	3.2	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF389)
CRCB	PF02537.10	gi|385804526|ref|YP_005840926.1|	-	8.6e-19	67.5	17.3	1e-18	67.3	12.0	1.0	1	0	0	1	1	1	1	CrcB-like	protein
AAA_10	PF12846.2	gi|385804527|ref|YP_005840927.1|	-	4.7e-17	62.3	0.1	3.4e-11	43.1	0.0	2.1	1	1	1	2	2	2	2	AAA-like	domain
FtsK_SpoIIIE	PF01580.13	gi|385804527|ref|YP_005840927.1|	-	1.2e-07	31.4	0.0	6.2e-05	22.5	0.0	2.3	2	0	0	2	2	2	2	FtsK/SpoIIIE	family
DUF87	PF01935.12	gi|385804527|ref|YP_005840927.1|	-	2.5e-06	27.5	0.0	5.4e-06	26.3	0.0	1.5	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF87
DUF853	PF05872.7	gi|385804527|ref|YP_005840927.1|	-	1.7e-05	23.3	0.1	0.00018	20.0	0.0	2.1	2	0	0	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF853)
TrwB_AAD_bind	PF10412.4	gi|385804527|ref|YP_005840927.1|	-	0.00022	19.9	0.0	0.36	9.4	0.0	2.2	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
Zot	PF05707.7	gi|385804527|ref|YP_005840927.1|	-	0.039	13.4	0.1	0.18	11.2	0.0	2.0	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
Helicase_RecD	PF05127.9	gi|385804527|ref|YP_005840927.1|	-	0.059	12.9	0.0	0.25	10.9	0.0	2.0	2	0	0	2	2	2	0	Helicase
AAA_16	PF13191.1	gi|385804527|ref|YP_005840927.1|	-	0.067	13.1	0.2	0.36	10.8	0.0	2.1	2	1	0	2	2	2	0	AAA	ATPase	domain
AAA_22	PF13401.1	gi|385804527|ref|YP_005840927.1|	-	0.11	12.6	0.0	9.7	6.3	0.0	2.6	3	1	0	3	3	3	0	AAA	domain
CarboxypepD_reg	PF13620.1	gi|385804528|ref|YP_005840928.1|	-	0.00016	21.6	0.2	0.00027	20.9	0.1	1.5	1	0	0	1	1	1	1	Carboxypeptidase	regulatory-like	domain
Big_1	PF02369.11	gi|385804528|ref|YP_005840928.1|	-	0.024	14.5	0.0	0.035	14.0	0.0	1.4	1	0	0	1	1	1	0	Bacterial	Ig-like	domain	(group	1)
DUF2964	PF11177.3	gi|385804528|ref|YP_005840928.1|	-	0.031	14.1	0.1	0.06	13.2	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2964)
DUF1743	PF08489.6	gi|385804529|ref|YP_005840929.1|	-	9.5e-35	118.9	0.0	1.6e-34	118.2	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1743)
tRNA_anti-codon	PF01336.20	gi|385804529|ref|YP_005840929.1|	-	0.0097	15.7	0.1	0.17	11.7	0.0	2.4	2	0	0	2	2	2	1	OB-fold	nucleic	acid	binding	domain
OrfB_Zn_ribbon	PF07282.6	gi|385804529|ref|YP_005840929.1|	-	0.06	13.0	1.5	0.14	11.8	1.1	1.6	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
C1_1	PF00130.17	gi|385804529|ref|YP_005840929.1|	-	0.11	12.2	0.4	0.21	11.3	0.3	1.4	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Zn_Tnp_IS1595	PF12760.2	gi|385804529|ref|YP_005840929.1|	-	0.39	10.5	2.5	0.89	9.4	1.7	1.6	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-C2H2	PF00096.21	gi|385804529|ref|YP_005840929.1|	-	1.5	9.2	3.9	11	6.5	0.5	2.7	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
HTH_3	PF01381.17	gi|385804530|ref|YP_005840930.1|	-	1.5e-10	40.7	0.0	2.8e-10	39.8	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.1	gi|385804530|ref|YP_005840930.1|	-	1.1e-06	28.7	0.2	2.7e-06	27.4	0.2	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.2	gi|385804530|ref|YP_005840930.1|	-	1.2e-06	28.4	0.0	2.2e-06	27.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|385804530|ref|YP_005840930.1|	-	0.00014	21.3	0.2	0.00045	19.7	0.0	1.8	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_11	PF08279.7	gi|385804530|ref|YP_005840930.1|	-	0.00049	19.6	0.0	0.0011	18.5	0.0	1.6	1	0	0	1	1	1	1	HTH	domain
HTH_25	PF13413.1	gi|385804530|ref|YP_005840930.1|	-	0.00076	19.0	0.1	0.0014	18.2	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_28	PF13518.1	gi|385804530|ref|YP_005840930.1|	-	0.012	15.5	0.0	0.028	14.4	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Sigma70_r4	PF04545.11	gi|385804530|ref|YP_005840930.1|	-	0.072	12.4	0.1	0.14	11.5	0.1	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_20	PF12840.2	gi|385804530|ref|YP_005840930.1|	-	0.1	12.4	0.0	3.7	7.4	0.0	3.2	3	1	0	3	3	3	0	Helix-turn-helix	domain
HTH_37	PF13744.1	gi|385804530|ref|YP_005840930.1|	-	0.11	12.3	0.0	1.7	8.5	0.0	2.8	3	0	0	3	3	3	0	Helix-turn-helix	domain
HTH_38	PF13936.1	gi|385804530|ref|YP_005840930.1|	-	0.11	12.0	0.0	0.24	10.9	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_8	PF02954.14	gi|385804530|ref|YP_005840930.1|	-	0.12	11.9	0.1	0.26	10.8	0.1	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
Glutaredoxin	PF00462.19	gi|385804531|ref|YP_005840931.1|	-	4e-12	45.9	0.0	5e-12	45.6	0.0	1.2	1	0	0	1	1	1	1	Glutaredoxin
GST_N_3	PF13417.1	gi|385804531|ref|YP_005840931.1|	-	2.6e-11	43.5	0.0	2.9e-11	43.4	0.0	1.0	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_N_2	PF13409.1	gi|385804531|ref|YP_005840931.1|	-	3.8e-08	33.2	0.0	4.3e-08	33.0	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
DUF836	PF05768.9	gi|385804531|ref|YP_005840931.1|	-	0.0036	17.5	0.1	0.0049	17.0	0.1	1.3	1	1	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
Thioredoxin_3	PF13192.1	gi|385804531|ref|YP_005840931.1|	-	0.073	12.9	0.1	0.14	11.9	0.1	1.5	1	1	0	1	1	1	0	Thioredoxin	domain
COX14	PF14880.1	gi|385804532|ref|YP_005840932.1|	-	0.42	10.2	2.8	7.7	6.2	0.0	3.1	2	0	0	2	2	2	0	Cytochrome	oxidase	c	assembly
TRAM	PF01938.15	gi|385804533|ref|YP_005840933.1|	-	1.1e-10	41.1	1.5	2e-10	40.2	1.0	1.5	1	0	0	1	1	1	1	TRAM	domain
Macoilin	PF09726.4	gi|385804533|ref|YP_005840933.1|	-	0.95	7.6	4.3	1	7.5	3.0	1.0	1	0	0	1	1	1	0	Transmembrane	protein
PhnA_Zn_Ribbon	PF08274.7	gi|385804534|ref|YP_005840934.1|	-	0.00033	20.3	0.3	0.00043	20.0	0.2	1.2	1	0	0	1	1	1	1	PhnA	Zinc-Ribbon
FdhE	PF04216.7	gi|385804534|ref|YP_005840934.1|	-	0.014	15.0	0.3	0.016	14.9	0.2	1.2	1	0	0	1	1	1	0	Protein	involved	in	formate	dehydrogenase	formation
DZR	PF12773.2	gi|385804534|ref|YP_005840934.1|	-	0.017	14.8	1.1	0.028	14.2	0.7	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
DUF678	PF05077.7	gi|385804534|ref|YP_005840934.1|	-	0.019	14.9	0.9	0.022	14.7	0.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF678)
HypA	PF01155.14	gi|385804534|ref|YP_005840934.1|	-	0.025	14.2	0.4	0.029	14.0	0.3	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Orbi_NS1	PF01718.11	gi|385804534|ref|YP_005840934.1|	-	0.03	12.3	0.7	0.031	12.3	0.5	1.0	1	0	0	1	1	1	0	Orbivirus	non-structural	protein	NS1,	or	hydrophobic	tubular	protein
DUF4428	PF14471.1	gi|385804534|ref|YP_005840934.1|	-	0.032	13.9	0.9	0.58	9.9	0.1	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4428)
DUF2296	PF10058.4	gi|385804534|ref|YP_005840934.1|	-	0.034	13.9	2.2	0.75	9.5	1.5	2.1	1	1	0	1	1	1	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
Elf1	PF05129.8	gi|385804534|ref|YP_005840934.1|	-	0.037	13.7	2.5	0.047	13.3	0.1	1.9	1	1	1	2	2	2	0	Transcription	elongation	factor	Elf1	like
Zn-ribbon_8	PF09723.5	gi|385804534|ref|YP_005840934.1|	-	0.041	13.8	1.9	0.52	10.3	1.3	2.1	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-Di19	PF05605.7	gi|385804534|ref|YP_005840934.1|	-	0.043	13.9	1.4	0.16	12.1	0.2	2.0	2	0	0	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-Sec23_Sec24	PF04810.10	gi|385804534|ref|YP_005840934.1|	-	0.049	13.1	0.3	0.35	10.4	0.0	2.0	2	0	0	2	2	2	0	Sec23/Sec24	zinc	finger
Zn_Tnp_IS1595	PF12760.2	gi|385804534|ref|YP_005840934.1|	-	0.051	13.3	1.6	0.44	10.3	0.1	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Cys_rich_CPXG	PF14255.1	gi|385804534|ref|YP_005840934.1|	-	0.062	13.1	0.9	1.8	8.4	0.1	2.2	2	0	0	2	2	2	0	Cysteine-rich	CPXCG
TF_Zn_Ribbon	PF08271.7	gi|385804534|ref|YP_005840934.1|	-	0.09	12.1	1.3	0.3	10.4	0.1	2.0	2	0	0	2	2	2	0	TFIIB	zinc-binding
A2L_zn_ribbon	PF08792.5	gi|385804534|ref|YP_005840934.1|	-	0.13	11.7	0.5	2	7.9	0.1	2.1	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zf-RING_5	PF14634.1	gi|385804534|ref|YP_005840934.1|	-	0.19	11.4	3.2	0.38	10.5	2.2	1.4	1	1	0	1	1	1	0	zinc-RING	finger	domain
zf-RING_3	PF14369.1	gi|385804534|ref|YP_005840934.1|	-	0.2	11.7	2.0	1.1	9.2	1.4	2.0	1	1	0	1	1	1	0	zinc-finger
Lar_restr_allev	PF14354.1	gi|385804534|ref|YP_005840934.1|	-	0.29	11.4	4.0	0.91	9.8	0.3	2.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
NOB1_Zn_bind	PF08772.6	gi|385804534|ref|YP_005840934.1|	-	0.32	10.8	3.3	3.6	7.4	2.3	2.1	1	1	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Ogr_Delta	PF04606.7	gi|385804534|ref|YP_005840934.1|	-	0.38	10.4	3.1	8.1	6.1	0.1	2.1	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
GFA	PF04828.9	gi|385804534|ref|YP_005840934.1|	-	0.39	10.7	2.3	2.4	8.1	1.6	1.9	1	1	0	1	1	1	0	Glutathione-dependent	formaldehyde-activating	enzyme
zf-C3HC4_4	PF15227.1	gi|385804534|ref|YP_005840934.1|	-	0.76	9.6	3.7	23	4.9	2.6	2.1	1	1	0	1	1	1	0	zinc	finger	of	C3HC4-type,	RING
PfkB	PF00294.19	gi|385804535|ref|YP_005840935.1|	-	2.6e-61	207.3	0.0	3e-61	207.1	0.0	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
HTH_24	PF13412.1	gi|385804536|ref|YP_005840936.1|	-	2.1e-15	55.7	0.1	3.3e-15	55.2	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|385804536|ref|YP_005840936.1|	-	5.4e-12	45.0	0.2	5.4e-12	45.0	0.1	1.7	2	0	0	2	2	1	1	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.2	gi|385804536|ref|YP_005840936.1|	-	6.8e-07	28.8	0.0	1.3e-06	27.9	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.7	gi|385804536|ref|YP_005840936.1|	-	1e-06	28.2	0.0	1.9e-06	27.4	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.2	gi|385804536|ref|YP_005840936.1|	-	1.7e-06	27.7	0.0	3e-06	26.9	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|385804536|ref|YP_005840936.1|	-	3.7e-05	23.2	0.0	6.8e-05	22.3	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.15	gi|385804536|ref|YP_005840936.1|	-	4e-05	23.2	0.0	7e-05	22.4	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_23	PF13384.1	gi|385804536|ref|YP_005840936.1|	-	5.3e-05	22.7	0.0	9.2e-05	21.9	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
Fe_dep_repress	PF01325.14	gi|385804536|ref|YP_005840936.1|	-	0.00022	21.1	0.0	0.00047	20.0	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_28	PF13518.1	gi|385804536|ref|YP_005840936.1|	-	0.00033	20.5	0.1	0.00061	19.7	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|385804536|ref|YP_005840936.1|	-	0.0005	19.5	0.0	0.00085	18.8	0.0	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_38	PF13936.1	gi|385804536|ref|YP_005840936.1|	-	0.00081	18.8	0.0	0.0014	18.1	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|385804536|ref|YP_005840936.1|	-	0.0011	19.1	0.0	0.0023	18.2	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_10	PF04967.7	gi|385804536|ref|YP_005840936.1|	-	0.0015	18.0	0.0	0.004	16.7	0.0	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4_2	PF08281.7	gi|385804536|ref|YP_005840936.1|	-	0.002	17.5	0.0	0.0034	16.8	0.0	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
LexA_DNA_bind	PF01726.11	gi|385804536|ref|YP_005840936.1|	-	0.0029	17.1	0.0	0.0057	16.1	0.0	1.4	1	0	0	1	1	1	1	LexA	DNA	binding	domain
Rrf2	PF02082.15	gi|385804536|ref|YP_005840936.1|	-	0.0051	16.9	0.0	0.009	16.1	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
GerE	PF00196.14	gi|385804536|ref|YP_005840936.1|	-	0.0075	15.5	0.0	0.017	14.4	0.0	1.5	2	0	0	2	2	1	1	Bacterial	regulatory	proteins,	luxR	family
FaeA	PF04703.7	gi|385804536|ref|YP_005840936.1|	-	0.0083	16.2	0.0	0.014	15.5	0.0	1.3	1	0	0	1	1	1	1	FaeA-like	protein
Sigma70_r4	PF04545.11	gi|385804536|ref|YP_005840936.1|	-	0.011	15.0	0.0	0.017	14.4	0.0	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
RPA_C	PF08784.6	gi|385804536|ref|YP_005840936.1|	-	0.012	16.0	0.0	0.035	14.5	0.0	1.7	2	0	0	2	2	2	0	Replication	protein	A	C	terminal
MarR	PF01047.17	gi|385804536|ref|YP_005840936.1|	-	0.014	15.0	0.0	0.023	14.4	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HTH_3	PF01381.17	gi|385804536|ref|YP_005840936.1|	-	0.018	14.9	0.0	0.12	12.1	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix
HrcA_DNA-bdg	PF03444.10	gi|385804536|ref|YP_005840936.1|	-	0.02	14.3	0.0	0.034	13.5	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
EAP30	PF04157.11	gi|385804536|ref|YP_005840936.1|	-	0.021	13.9	0.0	0.037	13.1	0.0	1.4	1	0	0	1	1	1	0	EAP30/Vps36	family
GntR	PF00392.16	gi|385804536|ref|YP_005840936.1|	-	0.029	13.8	0.0	0.052	12.9	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
Put_DNA-bind_N	PF06971.8	gi|385804536|ref|YP_005840936.1|	-	0.029	14.1	0.0	0.062	13.0	0.0	1.6	1	0	0	1	1	1	0	Putative	DNA-binding	protein	N-terminus
TrmB	PF01978.14	gi|385804536|ref|YP_005840936.1|	-	0.031	13.9	0.0	0.055	13.1	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_29	PF13551.1	gi|385804536|ref|YP_005840936.1|	-	0.038	14.1	0.0	0.076	13.1	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_Tnp_ISL3	PF13542.1	gi|385804536|ref|YP_005840936.1|	-	0.047	12.8	0.0	0.081	12.1	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_Crp_2	PF13545.1	gi|385804536|ref|YP_005840936.1|	-	0.051	13.3	0.0	0.098	12.4	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_12	PF08461.5	gi|385804536|ref|YP_005840936.1|	-	0.058	13.1	0.4	0.16	11.7	0.0	1.9	2	0	0	2	2	2	0	Ribonuclease	R	winged-helix	domain
Bac_rhodopsin	PF01036.13	gi|385804537|ref|YP_005840937.1|	-	4.6e-52	176.5	21.7	5.4e-52	176.3	15.0	1.0	1	0	0	1	1	1	1	Bacteriorhodopsin-like	protein
DEAD	PF00270.24	gi|385804538|ref|YP_005840938.1|	-	2.9e-23	82.1	0.0	6.6e-23	81.0	0.0	1.6	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|385804538|ref|YP_005840938.1|	-	2.3e-12	46.6	0.0	4.2e-12	45.7	0.0	1.5	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|385804538|ref|YP_005840938.1|	-	3.3e-07	30.3	0.0	7.7e-07	29.1	0.0	1.6	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
CBS	PF00571.23	gi|385804539|ref|YP_005840939.1|	-	2e-27	94.6	4.4	3.3e-17	61.9	0.1	2.5	2	0	0	2	2	2	2	CBS	domain
Peptidase_M50	PF02163.17	gi|385804539|ref|YP_005840939.1|	-	9.9e-20	70.3	13.8	6.5e-15	54.6	3.1	2.7	1	1	2	3	3	3	2	Peptidase	family	M50
Peptidase_M50B	PF13398.1	gi|385804539|ref|YP_005840939.1|	-	0.00012	21.5	3.7	0.00012	21.5	2.6	2.5	1	1	2	3	3	3	1	Peptidase	M50B-like
Peptidase_MA_2	PF13485.1	gi|385804539|ref|YP_005840939.1|	-	0.052	13.6	0.0	0.094	12.7	0.0	1.4	1	0	0	1	1	1	0	Peptidase	MA	superfamily
HAD_2	PF13419.1	gi|385804540|ref|YP_005840940.1|	-	5e-22	78.9	0.0	5.7e-22	78.7	0.0	1.0	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|385804540|ref|YP_005840940.1|	-	3.7e-12	47.1	1.8	2.2e-11	44.6	1.3	1.9	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|385804540|ref|YP_005840940.1|	-	3.3e-08	33.1	0.4	7.6e-08	31.9	0.3	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
NurA	PF09376.5	gi|385804541|ref|YP_005840941.1|	-	4.3e-22	78.7	0.0	5.6e-22	78.4	0.0	1.2	1	0	0	1	1	1	1	NurA	domain
AMP-binding_C	PF13193.1	gi|385804542|ref|YP_005840942.1|	-	0.095	13.6	0.0	0.13	13.2	0.0	1.2	1	0	0	1	1	1	0	AMP-binding	enzyme	C-terminal	domain
AAA_10	PF12846.2	gi|385804543|ref|YP_005840943.1|	-	7.6e-20	71.5	0.0	3.7e-19	69.3	0.0	2.0	1	1	0	1	1	1	1	AAA-like	domain
DUF87	PF01935.12	gi|385804543|ref|YP_005840943.1|	-	1.2e-10	41.6	0.0	4.4e-10	39.7	0.0	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF87
DUF853	PF05872.7	gi|385804543|ref|YP_005840943.1|	-	6.5e-06	24.7	0.2	0.011	14.1	0.0	2.3	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
FtsK_SpoIIIE	PF01580.13	gi|385804543|ref|YP_005840943.1|	-	1.4e-05	24.6	0.0	0.0063	16.0	0.0	2.5	2	0	0	2	2	2	2	FtsK/SpoIIIE	family
AAA_19	PF13245.1	gi|385804543|ref|YP_005840943.1|	-	0.0019	17.8	0.0	0.0058	16.3	0.0	1.8	1	0	0	1	1	1	1	Part	of	AAA	domain
TrwB_AAD_bind	PF10412.4	gi|385804543|ref|YP_005840943.1|	-	0.0061	15.2	0.0	0.026	13.1	0.0	1.8	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_22	PF13401.1	gi|385804543|ref|YP_005840943.1|	-	0.016	15.3	0.0	0.094	12.8	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
T2SE	PF00437.15	gi|385804543|ref|YP_005840943.1|	-	0.019	13.9	0.0	0.039	12.8	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_16	PF13191.1	gi|385804543|ref|YP_005840943.1|	-	0.031	14.2	0.0	0.27	11.2	0.0	2.3	1	1	0	1	1	1	0	AAA	ATPase	domain
Zot	PF05707.7	gi|385804543|ref|YP_005840943.1|	-	0.035	13.5	0.0	0.92	8.9	0.0	2.2	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
DEAD	PF00270.24	gi|385804543|ref|YP_005840943.1|	-	0.067	12.6	0.0	0.46	9.9	0.0	2.2	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
HTH_29	PF13551.1	gi|385804545|ref|YP_005840945.1|	-	1.9e-15	56.9	0.1	1.3e-14	54.2	0.0	2.4	3	0	0	3	3	3	1	Winged	helix-turn	helix
HTH_33	PF13592.1	gi|385804545|ref|YP_005840945.1|	-	5.7e-13	48.2	0.0	2.8e-11	42.7	0.0	2.5	2	0	0	2	2	2	1	Winged	helix-turn	helix
DDE_3	PF13358.1	gi|385804545|ref|YP_005840945.1|	-	1.2e-12	47.8	0.0	2.4e-12	46.8	0.0	1.6	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_32	PF13565.1	gi|385804545|ref|YP_005840945.1|	-	1.3e-11	45.1	9.2	2.6e-11	44.1	0.0	3.6	3	2	1	4	4	4	1	Homeodomain-like	domain
DDE_1	PF03184.14	gi|385804545|ref|YP_005840945.1|	-	1.7e-05	24.1	0.0	2.9e-05	23.3	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_23	PF13384.1	gi|385804545|ref|YP_005840945.1|	-	1.8e-05	24.2	1.0	5.3e-05	22.7	0.1	2.3	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_28	PF13518.1	gi|385804545|ref|YP_005840945.1|	-	5.4e-05	23.0	0.5	0.00026	20.8	0.0	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
rve	PF00665.21	gi|385804545|ref|YP_005840945.1|	-	0.00017	21.6	0.0	0.00036	20.6	0.0	1.5	1	0	0	1	1	1	1	Integrase	core	domain
HTH_7	PF02796.10	gi|385804545|ref|YP_005840945.1|	-	0.001	18.9	0.0	0.0025	17.6	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
Colicin_Pyocin	PF01320.13	gi|385804545|ref|YP_005840945.1|	-	0.45	10.4	2.2	10	6.1	0.1	3.0	3	0	0	3	3	3	0	Colicin	immunity	protein	/	pyocin	immunity	protein
DUF552	PF04472.7	gi|385804546|ref|YP_005840946.1|	-	7.3e-17	61.0	1.9	9.6e-17	60.6	1.3	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF552)
ABC_tran	PF00005.22	gi|385804547|ref|YP_005840947.1|	-	4.2e-22	78.9	0.0	4.9e-12	46.3	0.0	4.3	3	1	0	3	3	3	3	ABC	transporter
SMC_N	PF02463.14	gi|385804547|ref|YP_005840947.1|	-	1.1e-12	47.6	0.0	0.028	13.6	0.0	4.2	3	1	0	3	3	3	3	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|385804547|ref|YP_005840947.1|	-	4.5e-09	35.7	0.0	0.0012	18.3	0.0	2.5	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_21	PF13304.1	gi|385804547|ref|YP_005840947.1|	-	3.7e-08	33.6	5.9	0.07	13.0	0.0	4.2	4	0	0	4	4	4	3	AAA	domain
AAA_25	PF13481.1	gi|385804547|ref|YP_005840947.1|	-	1e-06	28.2	0.0	0.097	12.0	0.0	3.4	3	0	0	3	3	3	2	AAA	domain
DnaJ_CXXCXGXG	PF00684.14	gi|385804547|ref|YP_005840947.1|	-	1.9e-06	27.8	4.6	0.0049	16.8	0.7	3.4	3	0	0	3	3	3	1	DnaJ	central	domain
AAA_22	PF13401.1	gi|385804547|ref|YP_005840947.1|	-	1.9e-06	28.0	0.3	0.24	11.5	0.0	3.9	4	0	0	4	4	3	2	AAA	domain
AAA_16	PF13191.1	gi|385804547|ref|YP_005840947.1|	-	1.7e-05	24.8	0.0	0.23	11.4	0.0	3.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_10	PF12846.2	gi|385804547|ref|YP_005840947.1|	-	2.2e-05	24.0	0.8	0.0099	15.3	0.0	2.7	2	1	0	2	2	2	1	AAA-like	domain
DUF258	PF03193.11	gi|385804547|ref|YP_005840947.1|	-	2.3e-05	23.6	0.0	0.15	11.2	0.0	2.3	2	0	0	2	2	2	2	Protein	of	unknown	function,	DUF258
AAA_17	PF13207.1	gi|385804547|ref|YP_005840947.1|	-	4.7e-05	24.1	1.2	0.64	10.8	0.0	4.1	4	0	0	4	4	3	2	AAA	domain
KaiC	PF06745.8	gi|385804547|ref|YP_005840947.1|	-	7.3e-05	21.9	0.2	0.076	12.1	0.0	2.8	3	0	0	3	3	3	2	KaiC
AAA_23	PF13476.1	gi|385804547|ref|YP_005840947.1|	-	0.00027	21.3	0.3	0.33	11.2	0.2	2.9	2	1	0	2	2	2	1	AAA	domain
AAA_18	PF13238.1	gi|385804547|ref|YP_005840947.1|	-	0.00027	21.2	0.1	0.74	10.1	0.0	3.2	3	0	0	3	3	2	1	AAA	domain
AAA_14	PF13173.1	gi|385804547|ref|YP_005840947.1|	-	0.00032	20.6	0.0	0.39	10.6	0.0	3.2	3	0	0	3	3	3	1	AAA	domain
AAA_33	PF13671.1	gi|385804547|ref|YP_005840947.1|	-	0.00095	19.0	0.0	1.8	8.4	0.0	3.1	2	0	0	2	2	2	2	AAA	domain
AAA_15	PF13175.1	gi|385804547|ref|YP_005840947.1|	-	0.0037	16.3	0.0	1.9	7.4	0.0	2.9	3	0	0	3	3	3	1	AAA	ATPase	domain
APS_kinase	PF01583.15	gi|385804547|ref|YP_005840947.1|	-	0.0061	16.2	0.1	3.7	7.2	0.0	2.7	2	0	0	2	2	2	1	Adenylylsulphate	kinase
DUF2075	PF09848.4	gi|385804547|ref|YP_005840947.1|	-	0.0063	15.5	0.1	2.1	7.2	0.0	2.3	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
Viral_helicase1	PF01443.13	gi|385804547|ref|YP_005840947.1|	-	0.01	15.3	0.0	0.42	10.1	0.0	2.5	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
NACHT	PF05729.7	gi|385804547|ref|YP_005840947.1|	-	0.011	15.4	0.0	0.41	10.2	0.0	2.3	2	0	0	2	2	2	0	NACHT	domain
Arch_ATPase	PF01637.13	gi|385804547|ref|YP_005840947.1|	-	0.012	15.2	0.0	6.3	6.4	0.0	2.8	3	0	0	3	3	2	0	Archaeal	ATPase
MobB	PF03205.9	gi|385804547|ref|YP_005840947.1|	-	0.018	14.7	0.1	0.78	9.4	0.0	2.8	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
cobW	PF02492.14	gi|385804547|ref|YP_005840947.1|	-	0.021	14.2	0.1	1.3	8.4	0.0	2.5	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
MMR_HSR1	PF01926.18	gi|385804547|ref|YP_005840947.1|	-	0.029	14.3	0.2	2.4	8.1	0.0	3.5	4	0	0	4	4	4	0	50S	ribosome-binding	GTPase
DUF3006	PF11213.3	gi|385804547|ref|YP_005840947.1|	-	0.039	13.6	0.6	0.15	11.7	0.4	2.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3006)
AAA_19	PF13245.1	gi|385804547|ref|YP_005840947.1|	-	0.041	13.6	0.1	12	5.7	0.0	2.7	2	0	0	2	2	2	0	Part	of	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|385804547|ref|YP_005840947.1|	-	0.058	12.8	0.1	0.75	9.2	0.0	2.5	3	0	0	3	3	3	0	FtsK/SpoIIIE	family
RNA_helicase	PF00910.17	gi|385804547|ref|YP_005840947.1|	-	0.11	12.7	0.0	3.6	7.8	0.0	2.4	2	0	0	2	2	2	0	RNA	helicase
Miro	PF08477.8	gi|385804547|ref|YP_005840947.1|	-	0.13	12.7	0.6	27	5.2	0.0	3.2	3	0	0	3	3	2	0	Miro-like	protein
zf-RING_3	PF14369.1	gi|385804547|ref|YP_005840947.1|	-	0.16	11.9	0.4	12	5.9	0.0	2.7	2	0	0	2	2	2	0	zinc-finger
Zn-ribbon_8	PF09723.5	gi|385804547|ref|YP_005840947.1|	-	0.36	10.8	6.0	6.2	6.8	0.1	3.4	3	0	0	3	3	3	0	Zinc	ribbon	domain
GTP_EFTU	PF00009.22	gi|385804550|ref|YP_005840950.1|	-	2.3e-30	105.4	0.0	1.3e-29	102.9	0.0	2.1	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
IF-2	PF11987.3	gi|385804550|ref|YP_005840950.1|	-	8.7e-23	80.2	1.3	2.3e-22	78.9	0.9	1.7	1	0	0	1	1	1	1	Translation-initiation	factor	2
GTP_EFTU_D2	PF03144.20	gi|385804550|ref|YP_005840950.1|	-	2.5e-12	46.7	5.4	1.4e-09	37.9	0.0	3.0	3	0	0	3	3	3	2	Elongation	factor	Tu	domain	2
GTP_EFTU_D4	PF14578.1	gi|385804550|ref|YP_005840950.1|	-	7.8e-11	41.4	0.1	2.6e-10	39.7	0.0	2.0	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	4
MMR_HSR1	PF01926.18	gi|385804550|ref|YP_005840950.1|	-	9.3e-06	25.5	0.0	2.5e-05	24.1	0.0	1.8	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
ATP_bind_1	PF03029.12	gi|385804550|ref|YP_005840950.1|	-	0.0051	16.3	0.0	0.02	14.4	0.0	2.0	1	1	1	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
Dynamin_N	PF00350.18	gi|385804550|ref|YP_005840950.1|	-	0.017	14.9	0.2	1.2	8.9	0.0	2.4	1	1	0	2	2	2	0	Dynamin	family
MobB	PF03205.9	gi|385804550|ref|YP_005840950.1|	-	0.026	14.2	0.5	0.071	12.8	0.0	2.0	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Miro	PF08477.8	gi|385804550|ref|YP_005840950.1|	-	0.063	13.7	0.0	0.14	12.6	0.0	1.6	1	0	0	1	1	1	0	Miro-like	protein
PRC	PF05239.11	gi|385804551|ref|YP_005840951.1|	-	2.3e-08	33.7	0.0	3.1e-08	33.3	0.0	1.2	1	0	0	1	1	1	1	PRC-barrel	domain
MraZ	PF02381.13	gi|385804551|ref|YP_005840951.1|	-	0.08	12.6	0.0	0.11	12.2	0.0	1.3	1	0	0	1	1	1	0	MraZ	protein
NOB1_Zn_bind	PF08772.6	gi|385804552|ref|YP_005840952.1|	-	0.00017	21.3	0.5	0.0003	20.5	0.4	1.4	1	0	0	1	1	1	1	Nin	one	binding	(NOB1)	Zn-ribbon	like
UPF0278	PF08745.6	gi|385804552|ref|YP_005840952.1|	-	0.00088	18.5	0.2	0.0011	18.2	0.1	1.3	1	0	0	1	1	1	1	UPF0278	family
zf-C3HC4_3	PF13920.1	gi|385804552|ref|YP_005840952.1|	-	0.0057	16.3	0.7	0.0079	15.8	0.5	1.2	1	0	0	1	1	1	1	Zinc	finger,	C3HC4	type	(RING	finger)
Zn-ribbon_8	PF09723.5	gi|385804552|ref|YP_005840952.1|	-	0.0074	16.2	5.6	0.15	12.0	3.9	2.2	1	1	0	1	1	1	1	Zinc	ribbon	domain
Mut7-C	PF01927.11	gi|385804552|ref|YP_005840952.1|	-	0.0077	16.2	0.1	0.0098	15.8	0.1	1.2	1	0	0	1	1	1	1	Mut7-C	RNAse	domain
Rad50_zn_hook	PF04423.9	gi|385804552|ref|YP_005840952.1|	-	0.0085	15.5	4.0	0.25	10.8	0.3	2.5	1	1	1	2	2	2	2	Rad50	zinc	hook	motif
DZR	PF12773.2	gi|385804552|ref|YP_005840952.1|	-	0.0087	15.8	1.1	0.014	15.1	0.8	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
DUF4411	PF14367.1	gi|385804552|ref|YP_005840952.1|	-	0.016	14.8	0.5	0.21	11.2	0.2	2.1	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4411)
DNA_ligase_ZBD	PF03119.11	gi|385804552|ref|YP_005840952.1|	-	0.023	14.3	0.3	0.023	14.3	0.2	2.3	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
SprT-like	PF10263.4	gi|385804552|ref|YP_005840952.1|	-	0.03	13.9	0.0	0.036	13.7	0.0	1.3	1	0	0	1	1	1	0	SprT-like	family
PIN	PF01850.16	gi|385804552|ref|YP_005840952.1|	-	0.03	14.6	2.0	0.11	12.8	0.6	2.0	1	1	1	2	2	2	0	PIN	domain
zinc-ribbons_6	PF07191.7	gi|385804552|ref|YP_005840952.1|	-	0.065	13.0	0.4	0.12	12.2	0.3	1.3	1	0	0	1	1	1	0	zinc-ribbons
zf-C2H2	PF00096.21	gi|385804552|ref|YP_005840952.1|	-	0.087	13.2	1.5	1.7	9.1	0.1	2.3	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
zf-ribbon_3	PF13248.1	gi|385804552|ref|YP_005840952.1|	-	0.14	11.4	1.7	0.24	10.6	1.2	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-C2HC_2	PF13913.1	gi|385804552|ref|YP_005840952.1|	-	0.21	11.2	8.8	0.16	11.6	0.8	2.3	1	1	1	2	2	2	0	zinc-finger	of	a	C2HC-type
HypA	PF01155.14	gi|385804552|ref|YP_005840952.1|	-	0.25	11.0	2.9	0.41	10.3	1.9	1.7	1	1	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zf-C2H2_4	PF13894.1	gi|385804552|ref|YP_005840952.1|	-	0.3	11.5	2.0	18	5.9	0.1	2.4	1	1	1	2	2	2	0	C2H2-type	zinc	finger
DNA_RNApol_7kD	PF03604.8	gi|385804552|ref|YP_005840952.1|	-	0.72	9.3	3.8	1.6	8.3	2.6	1.6	1	0	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zinc_ribbon_2	PF13240.1	gi|385804552|ref|YP_005840952.1|	-	1.7	8.2	6.1	0.92	9.0	2.4	1.9	2	1	0	2	2	2	0	zinc-ribbon	domain
Abi	PF02517.11	gi|385804553|ref|YP_005840953.1|	-	2.1e-16	59.8	5.0	2.1e-16	59.8	3.4	2.5	2	1	0	2	2	2	1	CAAX	protease	self-immunity
TctB	PF07331.6	gi|385804553|ref|YP_005840953.1|	-	6.5	6.4	27.4	0.16	11.6	10.3	3.0	1	1	1	2	2	2	0	Tripartite	tricarboxylate	transporter	TctB	family
AzlD	PF05437.7	gi|385804554|ref|YP_005840954.1|	-	2.9e-23	81.6	7.9	3.3e-23	81.4	5.5	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	protein	(AzlD)
DUF2516	PF10724.4	gi|385804554|ref|YP_005840954.1|	-	0.26	11.2	0.3	0.26	11.2	0.2	1.9	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2516)
AzlC	PF03591.9	gi|385804555|ref|YP_005840955.1|	-	3.1e-42	143.9	5.6	3.1e-42	143.9	3.9	1.9	2	1	0	2	2	2	1	AzlC	protein
FixQ	PF05545.6	gi|385804556|ref|YP_005840956.1|	-	0.031	13.9	0.8	0.046	13.3	0.6	1.3	1	0	0	1	1	1	0	Cbb3-type	cytochrome	oxidase	component	FixQ
UPF0552	PF10574.4	gi|385804556|ref|YP_005840956.1|	-	1.3	8.4	5.6	1.5	8.2	3.9	1.1	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0552
Abi	PF02517.11	gi|385804557|ref|YP_005840957.1|	-	1.6e-15	56.9	2.2	1.6e-15	56.9	1.5	2.7	2	1	0	2	2	2	1	CAAX	protease	self-immunity
NUDIX	PF00293.23	gi|385804558|ref|YP_005840958.1|	-	1.2e-12	47.5	0.1	1.7e-12	47.1	0.0	1.2	1	0	0	1	1	1	1	NUDIX	domain
Arylsulfotran_2	PF14269.1	gi|385804559|ref|YP_005840959.1|	-	0.00035	19.8	1.2	0.014	14.6	0.7	2.5	1	1	0	1	1	1	1	Arylsulfotransferase	(ASST)
Arylsulfotrans	PF05935.6	gi|385804559|ref|YP_005840959.1|	-	0.00064	18.3	3.0	0.0014	17.1	0.3	2.2	1	1	0	2	2	2	1	Arylsulfotransferase	(ASST)
NHL	PF01436.16	gi|385804559|ref|YP_005840959.1|	-	0.3	11.1	6.8	0.41	10.6	0.1	4.2	4	0	0	4	4	4	0	NHL	repeat
PQQ_3	PF13570.1	gi|385804559|ref|YP_005840959.1|	-	0.58	10.5	3.5	2.9	8.2	0.6	3.3	3	0	0	3	3	3	0	PQQ-like	domain
Glyoxalase_2	PF12681.2	gi|385804560|ref|YP_005840960.1|	-	5.7e-07	30.1	0.0	7.1e-07	29.8	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase	PF00903.20	gi|385804560|ref|YP_005840960.1|	-	0.0037	17.2	0.2	0.0095	15.9	0.1	1.7	1	1	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
DUF457	PF04307.9	gi|385804561|ref|YP_005840961.1|	-	4.2e-12	45.6	28.5	9.1e-11	41.3	17.7	2.7	2	1	0	2	2	2	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
zf-CHY	PF05495.7	gi|385804562|ref|YP_005840962.1|	-	3.9e-12	46.1	1.5	3.1e-05	24.0	0.2	2.4	1	1	0	2	2	2	2	CHY	zinc	finger
zf-RING_3	PF14369.1	gi|385804562|ref|YP_005840962.1|	-	0.0023	17.8	4.5	0.045	13.7	0.1	3.1	2	2	0	2	2	2	2	zinc-finger
DZR	PF12773.2	gi|385804562|ref|YP_005840962.1|	-	0.87	9.4	7.4	1.7	8.5	3.0	3.0	2	1	0	2	2	2	0	Double	zinc	ribbon
Lar_restr_allev	PF14354.1	gi|385804562|ref|YP_005840962.1|	-	5.7	7.3	8.3	7.3	6.9	1.4	2.6	2	0	0	2	2	2	0	Restriction	alleviation	protein	Lar
ABC_transp_aux	PF09822.4	gi|385804563|ref|YP_005840963.1|	-	4.8e-07	29.5	0.0	6.3e-07	29.1	0.0	1.2	1	0	0	1	1	1	1	ABC-type	uncharacterized	transport	system
Peptidase_S49	PF01343.13	gi|385804564|ref|YP_005840964.1|	-	5e-17	62.1	3.8	1.4e-07	31.4	0.0	2.3	2	0	0	2	2	2	2	Peptidase	family	S49
CLP_protease	PF00574.18	gi|385804564|ref|YP_005840964.1|	-	0.0083	15.7	0.2	1.4	8.5	0.1	2.2	2	0	0	2	2	2	2	Clp	protease
DUF3068	PF11271.3	gi|385804564|ref|YP_005840964.1|	-	0.039	12.9	0.2	0.066	12.2	0.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3068)
ABC2_membrane	PF01061.19	gi|385804565|ref|YP_005840965.1|	-	4.7e-27	94.5	20.4	5.7e-27	94.2	14.2	1.1	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.2	gi|385804565|ref|YP_005840965.1|	-	1.5e-07	30.7	22.1	1.5e-07	30.7	15.3	1.5	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.1	gi|385804565|ref|YP_005840965.1|	-	1.3	8.3	18.1	2.5	7.3	12.6	1.7	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
ABC_tran	PF00005.22	gi|385804566|ref|YP_005840966.1|	-	3.1e-30	105.2	0.0	4.7e-30	104.6	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385804566|ref|YP_005840966.1|	-	1.6e-16	61.0	0.3	1.6e-10	41.4	0.0	2.3	1	1	0	2	2	2	2	AAA	domain
AAA_10	PF12846.2	gi|385804566|ref|YP_005840966.1|	-	0.0029	17.0	0.0	0.0061	16.0	0.0	1.5	1	0	0	1	1	1	1	AAA-like	domain
AAA_15	PF13175.1	gi|385804566|ref|YP_005840966.1|	-	0.0045	16.1	0.0	0.18	10.8	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_23	PF13476.1	gi|385804566|ref|YP_005840966.1|	-	0.0094	16.2	0.0	0.013	15.8	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|385804566|ref|YP_005840966.1|	-	0.012	14.8	0.0	0.25	10.5	0.0	2.1	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
AAA_30	PF13604.1	gi|385804566|ref|YP_005840966.1|	-	0.028	13.9	0.0	0.075	12.6	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|385804566|ref|YP_005840966.1|	-	0.038	13.1	0.1	0.18	10.9	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
AAA_29	PF13555.1	gi|385804566|ref|YP_005840966.1|	-	0.042	13.3	0.3	0.085	12.4	0.2	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.1	gi|385804566|ref|YP_005840966.1|	-	0.054	12.8	0.1	0.19	11.0	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
DUF4162	PF13732.1	gi|385804566|ref|YP_005840966.1|	-	0.065	13.7	0.0	0.13	12.7	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4162)
AAA_19	PF13245.1	gi|385804566|ref|YP_005840966.1|	-	0.085	12.6	0.1	0.25	11.1	0.0	1.8	1	0	0	1	1	1	0	Part	of	AAA	domain
NTPase_1	PF03266.10	gi|385804566|ref|YP_005840966.1|	-	0.22	11.2	1.2	6.6	6.4	0.1	3.0	3	1	0	3	3	3	0	NTPase
PEP_mutase	PF13714.1	gi|385804567|ref|YP_005840967.1|	-	2.3e-45	154.6	0.1	2.9e-45	154.3	0.1	1.1	1	0	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
ICL	PF00463.16	gi|385804567|ref|YP_005840967.1|	-	1.9e-37	128.7	2.0	1.1e-18	66.7	0.0	2.1	1	1	1	2	2	2	2	Isocitrate	lyase	family
THUMP	PF02926.12	gi|385804568|ref|YP_005840968.1|	-	0.00042	20.2	0.0	0.0009	19.1	0.0	1.5	1	0	0	1	1	1	1	THUMP	domain
DnaJ_CXXCXGXG	PF00684.14	gi|385804568|ref|YP_005840968.1|	-	0.0016	18.4	1.1	0.0016	18.4	0.8	2.9	3	0	0	3	3	3	1	DnaJ	central	domain
DUF1356	PF07092.7	gi|385804568|ref|YP_005840968.1|	-	0.22	10.6	0.5	0.45	9.6	0.4	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1356)
RNase_HII	PF01351.13	gi|385804569|ref|YP_005840969.1|	-	3.3e-33	115.0	0.0	8e-33	113.7	0.0	1.6	1	1	0	1	1	1	1	Ribonuclease	HII
SecD_SecF	PF02355.11	gi|385804570|ref|YP_005840970.1|	-	8.6e-17	60.9	5.7	1.9e-16	59.8	4.0	1.5	1	0	0	1	1	1	1	Protein	export	membrane	protein
MMPL	PF03176.10	gi|385804570|ref|YP_005840970.1|	-	0.00047	18.9	13.1	0.0014	17.3	9.1	1.8	1	0	0	1	1	1	1	MMPL	family
Sterol-sensing	PF12349.3	gi|385804570|ref|YP_005840970.1|	-	0.004	16.6	3.1	0.0089	15.4	1.8	1.8	2	0	0	2	2	2	1	Sterol-sensing	domain	of	SREBP	cleavage-activation
Sec_GG	PF07549.9	gi|385804570|ref|YP_005840970.1|	-	0.011	14.9	0.0	0.16	11.2	0.0	2.9	2	0	0	2	2	2	0	SecD/SecF	GG	Motif
SecD_SecF	PF02355.11	gi|385804571|ref|YP_005840971.1|	-	3.3e-31	107.9	16.0	3.3e-31	107.9	11.1	1.7	2	0	0	2	2	2	1	Protein	export	membrane	protein
Sec_GG	PF07549.9	gi|385804571|ref|YP_005840971.1|	-	0.00056	18.9	0.1	0.0017	17.4	0.1	1.9	1	0	0	1	1	1	1	SecD/SecF	GG	Motif
Patched	PF02460.13	gi|385804571|ref|YP_005840971.1|	-	0.24	9.2	14.5	0.33	8.8	10.0	1.1	1	0	0	1	1	1	0	Patched	family
Peptidase_M50	PF02163.17	gi|385804573|ref|YP_005840973.1|	-	0.0095	14.9	1.5	0.015	14.2	1.1	1.2	1	0	0	1	1	1	1	Peptidase	family	M50
MARVEL	PF01284.18	gi|385804573|ref|YP_005840973.1|	-	0.098	12.4	12.0	0.15	11.8	0.7	2.4	1	1	1	2	2	2	0	Membrane-associating	domain
DUF2781	PF10914.3	gi|385804573|ref|YP_005840973.1|	-	0.23	11.2	3.3	0.25	11.0	1.3	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2781)
DUF898	PF05987.8	gi|385804573|ref|YP_005840973.1|	-	1.2	7.9	11.1	4.2	6.1	7.5	1.7	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF898)
Competence	PF03772.11	gi|385804573|ref|YP_005840973.1|	-	2.4	7.1	16.0	0.31	10.0	7.7	1.7	2	0	0	2	2	2	0	Competence	protein
PGI	PF00342.14	gi|385804574|ref|YP_005840974.1|	-	5.1e-50	170.3	0.0	6.9e-50	169.8	0.0	1.1	1	0	0	1	1	1	1	Phosphoglucose	isomerase
Na_H_Exchanger	PF00999.16	gi|385804575|ref|YP_005840975.1|	-	3.1e-32	111.5	46.6	4e-32	111.1	32.3	1.1	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
TrkA_N	PF02254.13	gi|385804575|ref|YP_005840975.1|	-	9.3e-29	99.7	0.5	2.5e-28	98.4	0.3	1.8	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.16	gi|385804575|ref|YP_005840975.1|	-	1.9e-10	40.1	0.8	1.9e-10	40.1	0.6	2.6	3	0	0	3	3	3	1	TrkA-C	domain
NAD_binding_7	PF13241.1	gi|385804575|ref|YP_005840975.1|	-	1.3e-06	28.6	0.1	4.1e-06	27.0	0.0	1.9	2	0	0	2	2	1	1	Putative	NAD(P)-binding
F420_oxidored	PF03807.12	gi|385804575|ref|YP_005840975.1|	-	5.6e-05	23.4	2.2	0.13	12.6	0.1	3.8	3	0	0	3	3	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
Pyr_redox	PF00070.22	gi|385804575|ref|YP_005840975.1|	-	0.00017	21.8	1.5	0.0038	17.5	0.6	2.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|385804575|ref|YP_005840975.1|	-	0.0014	17.7	0.6	0.002	17.2	0.4	1.2	1	0	0	1	1	1	1	FAD	binding	domain
DAO	PF01266.19	gi|385804575|ref|YP_005840975.1|	-	0.0028	16.6	1.9	0.0052	15.7	1.3	1.5	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
3HCDH_N	PF02737.13	gi|385804575|ref|YP_005840975.1|	-	0.0057	16.3	0.5	0.0057	16.3	0.3	2.1	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.11	gi|385804575|ref|YP_005840975.1|	-	0.0066	15.9	0.6	0.02	14.3	0.4	1.8	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
NAD_binding_10	PF13460.1	gi|385804575|ref|YP_005840975.1|	-	0.0066	16.4	1.0	0.016	15.2	0.7	1.7	1	0	0	1	1	1	1	NADH(P)-binding
NAD_Gly3P_dh_N	PF01210.18	gi|385804575|ref|YP_005840975.1|	-	0.0093	15.7	0.8	0.037	13.7	0.1	2.3	2	0	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Epimerase	PF01370.16	gi|385804575|ref|YP_005840975.1|	-	0.048	13.0	0.5	0.076	12.4	0.3	1.3	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
UDPG_MGDP_dh_N	PF03721.9	gi|385804575|ref|YP_005840975.1|	-	0.052	12.9	0.2	0.098	12.0	0.1	1.4	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Lycopene_cycl	PF05834.7	gi|385804575|ref|YP_005840975.1|	-	0.063	12.1	0.1	0.091	11.6	0.1	1.2	1	0	0	1	1	1	0	Lycopene	cyclase	protein
2-Hacid_dh_C	PF02826.14	gi|385804575|ref|YP_005840975.1|	-	0.15	11.2	2.6	0.14	11.3	0.1	2.0	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Pyr_redox_2	PF07992.9	gi|385804575|ref|YP_005840975.1|	-	0.21	11.4	4.4	0.12	12.2	0.3	2.2	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
AAA	PF00004.24	gi|385804577|ref|YP_005840977.1|	-	2.9e-40	137.5	0.0	1.3e-39	135.4	0.0	2.1	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_17	PF13207.1	gi|385804577|ref|YP_005840977.1|	-	9e-10	39.4	4.0	3e-09	37.7	0.2	3.1	2	1	0	2	2	2	1	AAA	domain
AAA_5	PF07728.9	gi|385804577|ref|YP_005840977.1|	-	9.8e-07	28.5	0.1	6.2e-06	25.9	0.0	2.5	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_18	PF13238.1	gi|385804577|ref|YP_005840977.1|	-	2.6e-06	27.7	1.4	1.8e-05	25.0	0.0	2.8	3	0	0	3	3	3	1	AAA	domain
AAA_33	PF13671.1	gi|385804577|ref|YP_005840977.1|	-	3.8e-06	26.8	1.0	1.1e-05	25.3	0.0	2.4	3	1	0	3	3	2	1	AAA	domain
AAA_16	PF13191.1	gi|385804577|ref|YP_005840977.1|	-	8.2e-06	25.9	4.3	0.0021	18.0	1.6	3.8	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_28	PF13521.1	gi|385804577|ref|YP_005840977.1|	-	9.3e-06	25.6	1.0	3.5e-05	23.8	0.0	2.6	3	0	0	3	3	3	1	AAA	domain
AAA_22	PF13401.1	gi|385804577|ref|YP_005840977.1|	-	2.6e-05	24.3	1.1	0.0026	17.9	0.4	3.1	2	1	0	2	2	1	1	AAA	domain
RuvB_N	PF05496.7	gi|385804577|ref|YP_005840977.1|	-	6.2e-05	22.1	0.0	0.00014	21.0	0.0	1.6	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_19	PF13245.1	gi|385804577|ref|YP_005840977.1|	-	0.00013	21.6	0.3	0.0084	15.8	0.0	2.6	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_2	PF07724.9	gi|385804577|ref|YP_005840977.1|	-	0.00019	21.3	0.0	0.00046	20.1	0.0	1.6	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
T2SE	PF00437.15	gi|385804577|ref|YP_005840977.1|	-	0.00028	19.8	0.0	0.00082	18.3	0.0	1.7	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
MMR_HSR1	PF01926.18	gi|385804577|ref|YP_005840977.1|	-	0.0014	18.5	0.0	0.0031	17.4	0.0	1.6	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
SKI	PF01202.17	gi|385804577|ref|YP_005840977.1|	-	0.0017	18.2	0.0	0.005	16.7	0.0	1.8	1	0	0	1	1	1	1	Shikimate	kinase
TIP49	PF06068.8	gi|385804577|ref|YP_005840977.1|	-	0.0018	17.0	0.0	0.004	15.9	0.0	1.6	1	0	0	1	1	1	1	TIP49	C-terminus
AAA_14	PF13173.1	gi|385804577|ref|YP_005840977.1|	-	0.0025	17.7	0.0	0.012	15.4	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.1	gi|385804577|ref|YP_005840977.1|	-	0.0029	17.0	1.2	0.06	12.7	0.0	3.4	2	1	1	4	4	4	1	AAA	domain
Cytidylate_kin2	PF13189.1	gi|385804577|ref|YP_005840977.1|	-	0.0044	16.9	0.0	0.014	15.3	0.0	1.8	1	0	0	1	1	1	1	Cytidylate	kinase-like	family
Sigma54_activ_2	PF14532.1	gi|385804577|ref|YP_005840977.1|	-	0.011	15.8	0.0	0.021	14.8	0.0	1.5	1	0	0	1	1	1	0	Sigma-54	interaction	domain
RNA_helicase	PF00910.17	gi|385804577|ref|YP_005840977.1|	-	0.011	15.8	0.0	0.03	14.5	0.0	1.8	1	0	0	1	1	1	0	RNA	helicase
IstB_IS21	PF01695.12	gi|385804577|ref|YP_005840977.1|	-	0.013	14.8	0.0	0.026	13.9	0.0	1.6	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
NACHT	PF05729.7	gi|385804577|ref|YP_005840977.1|	-	0.017	14.8	0.0	4.7	6.8	0.0	2.5	1	1	1	2	2	2	0	NACHT	domain
Zeta_toxin	PF06414.7	gi|385804577|ref|YP_005840977.1|	-	0.021	13.8	0.0	0.19	10.8	0.0	2.2	2	0	0	2	2	2	0	Zeta	toxin
ABC_tran	PF00005.22	gi|385804577|ref|YP_005840977.1|	-	0.022	15.0	0.0	0.087	13.1	0.0	2.0	2	0	0	2	2	1	0	ABC	transporter
AAA_3	PF07726.6	gi|385804577|ref|YP_005840977.1|	-	0.022	14.3	0.2	0.056	13.0	0.0	1.7	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_11	PF13086.1	gi|385804577|ref|YP_005840977.1|	-	0.028	14.0	0.0	0.046	13.2	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
MobB	PF03205.9	gi|385804577|ref|YP_005840977.1|	-	0.031	13.9	0.0	0.13	11.9	0.0	2.1	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Mg_chelatase	PF01078.16	gi|385804577|ref|YP_005840977.1|	-	0.035	13.2	0.0	0.075	12.1	0.0	1.6	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
ResIII	PF04851.10	gi|385804577|ref|YP_005840977.1|	-	0.055	13.3	0.0	0.12	12.1	0.0	1.6	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
Rad17	PF03215.10	gi|385804577|ref|YP_005840977.1|	-	0.067	11.8	0.0	0.1	11.2	0.0	1.2	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
SRP54	PF00448.17	gi|385804577|ref|YP_005840977.1|	-	0.088	12.2	0.0	0.35	10.2	0.0	2.0	1	1	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
Lactamase_B_2	PF12706.2	gi|385804578|ref|YP_005840978.1|	-	2.7e-17	62.9	0.4	3.5e-17	62.5	0.3	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|385804578|ref|YP_005840978.1|	-	1.4e-06	28.1	1.4	2e-06	27.5	1.0	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
NifU	PF01106.12	gi|385804580|ref|YP_005840980.1|	-	1.2e-07	31.4	0.1	1.6e-07	30.9	0.1	1.3	1	0	0	1	1	1	1	NifU-like	domain
ROK	PF00480.15	gi|385804581|ref|YP_005840981.1|	-	3.9e-30	105.0	0.2	5.1e-30	104.6	0.2	1.2	1	0	0	1	1	1	1	ROK	family
BcrAD_BadFG	PF01869.15	gi|385804581|ref|YP_005840981.1|	-	3.9e-05	23.0	0.9	0.00014	21.3	0.3	1.9	2	0	0	2	2	2	1	BadF/BadG/BcrA/BcrD	ATPase	family
FGGY_N	PF00370.16	gi|385804581|ref|YP_005840981.1|	-	0.026	13.8	0.1	0.053	12.8	0.1	1.6	1	1	0	1	1	1	0	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
zf-RING_3	PF14369.1	gi|385804583|ref|YP_005840983.1|	-	0.00084	19.2	5.1	0.07	13.1	0.0	3.2	3	0	0	3	3	3	2	zinc-finger
zf-CHY	PF05495.7	gi|385804583|ref|YP_005840983.1|	-	0.018	15.1	3.7	0.24	11.5	0.4	2.4	2	0	0	2	2	2	0	CHY	zinc	finger
DUF4379	PF14311.1	gi|385804583|ref|YP_005840983.1|	-	0.031	14.0	0.5	0.12	12.1	0.3	2.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4379)
Stc1	PF12898.2	gi|385804583|ref|YP_005840983.1|	-	0.047	13.7	1.4	10	6.2	0.2	2.8	2	1	0	2	2	2	0	Stc1	domain
DZR	PF12773.2	gi|385804583|ref|YP_005840983.1|	-	0.08	12.7	1.8	0.45	10.3	0.2	2.4	2	0	0	2	2	2	0	Double	zinc	ribbon
zinc_ribbon_5	PF13719.1	gi|385804583|ref|YP_005840983.1|	-	1.4	8.5	4.8	3	7.5	0.0	3.0	3	0	0	3	3	3	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|385804583|ref|YP_005840983.1|	-	1.8	8.3	5.2	4.7	6.9	0.0	3.0	3	0	0	3	3	3	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|385804583|ref|YP_005840983.1|	-	3.7	7.4	7.1	12	5.8	2.7	2.9	2	1	1	3	3	3	0	Transposase	zinc-ribbon	domain
HTH_20	PF12840.2	gi|385804584|ref|YP_005840984.1|	-	0.00068	19.3	0.0	0.0011	18.7	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|385804584|ref|YP_005840984.1|	-	0.0028	17.2	0.2	0.004	16.7	0.2	1.2	1	0	0	1	1	1	1	MarR	family
GntR	PF00392.16	gi|385804584|ref|YP_005840984.1|	-	0.027	13.8	0.0	0.041	13.3	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
TrmB	PF01978.14	gi|385804584|ref|YP_005840984.1|	-	0.041	13.5	0.0	0.053	13.2	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.15	gi|385804584|ref|YP_005840984.1|	-	0.067	13.3	0.0	0.1	12.7	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_27	PF13463.1	gi|385804584|ref|YP_005840984.1|	-	0.12	12.7	0.1	0.15	12.3	0.1	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
GCV_T	PF01571.16	gi|385804585|ref|YP_005840985.1|	-	9.7e-33	113.3	0.0	1.4e-32	112.7	0.0	1.2	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
GCV_T_C	PF08669.6	gi|385804585|ref|YP_005840985.1|	-	1.5e-14	53.7	0.0	3.1e-14	52.7	0.0	1.5	1	0	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
FAD_binding_3	PF01494.14	gi|385804586|ref|YP_005840986.1|	-	1.4e-15	57.2	4.0	3.5e-12	46.0	2.8	3.0	1	1	0	1	1	1	1	FAD	binding	domain
DAO	PF01266.19	gi|385804586|ref|YP_005840986.1|	-	1.1e-09	37.7	2.9	5.2e-05	22.3	0.2	2.4	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
Lycopene_cycl	PF05834.7	gi|385804586|ref|YP_005840986.1|	-	1e-08	34.5	0.6	0.00062	18.7	0.0	2.4	2	1	0	2	2	2	2	Lycopene	cyclase	protein
Pyr_redox_2	PF07992.9	gi|385804586|ref|YP_005840986.1|	-	1.4e-07	31.5	0.0	5.1e-06	26.5	0.0	2.2	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.2	gi|385804586|ref|YP_005840986.1|	-	0.0009	18.4	0.2	0.0013	17.9	0.1	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|385804586|ref|YP_005840986.1|	-	0.0027	16.2	0.2	0.035	12.5	0.1	2.0	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox_3	PF13738.1	gi|385804586|ref|YP_005840986.1|	-	0.0068	16.4	0.2	0.02	14.9	0.1	1.7	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|385804586|ref|YP_005840986.1|	-	0.012	14.4	4.8	0.2	10.4	0.5	2.2	1	1	0	2	2	2	0	FAD	binding	domain
SE	PF08491.5	gi|385804586|ref|YP_005840986.1|	-	0.16	10.8	0.0	0.52	9.0	0.0	1.7	2	0	0	2	2	2	0	Squalene	epoxidase
FBPase_3	PF01950.11	gi|385804586|ref|YP_005840986.1|	-	0.16	10.8	0.0	0.24	10.3	0.0	1.1	1	0	0	1	1	1	0	Fructose-1,6-bisphosphatase
NAD_binding_8	PF13450.1	gi|385804586|ref|YP_005840986.1|	-	2.6	8.1	4.5	0.45	10.5	0.1	2.2	2	0	0	2	2	1	0	NAD(P)-binding	Rossmann-like	domain
PvlArgDC	PF01862.11	gi|529167409|ref|YP_005840987.2|	-	1.9e-34	118.6	0.2	2.1e-34	118.4	0.1	1.0	1	0	0	1	1	1	1	Pyruvoyl-dependent	arginine	decarboxylase	(PvlArgDC)
DUF2267	PF10025.4	gi|529167409|ref|YP_005840987.2|	-	0.1	12.6	0.0	0.18	11.8	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2267)
DUF3313	PF11769.3	gi|529167409|ref|YP_005840987.2|	-	0.14	11.5	0.6	0.21	10.9	0.4	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3313)
AAA	PF00004.24	gi|385804588|ref|YP_005840988.1|	-	3.7e-44	150.1	0.9	1.1e-43	148.5	0.0	2.0	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_2	PF07724.9	gi|385804588|ref|YP_005840988.1|	-	2.3e-08	34.1	0.4	8.4e-08	32.3	0.0	2.1	2	0	0	2	2	2	1	AAA	domain	(Cdc48	subfamily)
AAA_5	PF07728.9	gi|385804588|ref|YP_005840988.1|	-	7.8e-07	28.9	0.2	4.4e-06	26.4	0.1	2.2	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
RuvB_N	PF05496.7	gi|385804588|ref|YP_005840988.1|	-	7.9e-07	28.3	0.0	2.2e-06	26.8	0.0	1.7	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_16	PF13191.1	gi|385804588|ref|YP_005840988.1|	-	1e-06	28.8	3.9	0.0011	19.0	0.0	3.2	2	2	2	4	4	4	2	AAA	ATPase	domain
AAA_22	PF13401.1	gi|385804588|ref|YP_005840988.1|	-	1.7e-06	28.1	1.1	0.00011	22.3	0.1	2.9	2	1	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|385804588|ref|YP_005840988.1|	-	4e-05	24.4	1.0	0.00011	22.9	0.0	2.2	2	2	0	2	2	1	1	AAA	domain
AAA_18	PF13238.1	gi|385804588|ref|YP_005840988.1|	-	0.00016	21.9	0.1	0.0062	16.8	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
DUF904	PF06005.7	gi|385804588|ref|YP_005840988.1|	-	0.00024	21.3	5.6	0.00028	21.0	3.0	1.8	2	0	0	2	2	1	1	Protein	of	unknown	function	(DUF904)
AAA_19	PF13245.1	gi|385804588|ref|YP_005840988.1|	-	0.00029	20.5	0.1	0.00086	19.0	0.1	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_33	PF13671.1	gi|385804588|ref|YP_005840988.1|	-	0.00035	20.4	0.1	0.0012	18.7	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
TIP49	PF06068.8	gi|385804588|ref|YP_005840988.1|	-	0.00037	19.3	0.1	0.00087	18.1	0.0	1.6	1	1	0	1	1	1	1	TIP49	C-terminus
AAA_14	PF13173.1	gi|385804588|ref|YP_005840988.1|	-	0.00043	20.1	0.0	0.0011	18.8	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
CASP_C	PF08172.7	gi|385804588|ref|YP_005840988.1|	-	0.00044	19.3	0.8	0.00065	18.8	0.5	1.3	1	0	0	1	1	1	1	CASP	C	terminal
AAA_28	PF13521.1	gi|385804588|ref|YP_005840988.1|	-	0.00066	19.6	0.2	0.0054	16.7	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
DUF815	PF05673.8	gi|385804588|ref|YP_005840988.1|	-	0.0012	17.8	0.0	0.0023	16.8	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
NACHT	PF05729.7	gi|385804588|ref|YP_005840988.1|	-	0.0014	18.3	0.2	0.021	14.4	0.0	2.3	2	0	0	2	2	2	1	NACHT	domain
IstB_IS21	PF01695.12	gi|385804588|ref|YP_005840988.1|	-	0.0016	17.9	0.0	0.0049	16.3	0.0	1.8	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
Zeta_toxin	PF06414.7	gi|385804588|ref|YP_005840988.1|	-	0.0018	17.4	0.0	0.0047	16.0	0.0	1.7	1	0	0	1	1	1	1	Zeta	toxin
Mg_chelatase	PF01078.16	gi|385804588|ref|YP_005840988.1|	-	0.0026	16.9	0.0	0.0056	15.8	0.0	1.5	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
CENP-Q	PF13094.1	gi|385804588|ref|YP_005840988.1|	-	0.0041	17.1	4.8	0.012	15.6	2.6	2.1	2	0	0	2	2	2	1	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
NTPase_1	PF03266.10	gi|385804588|ref|YP_005840988.1|	-	0.005	16.5	0.0	0.014	15.1	0.0	1.8	1	0	0	1	1	1	1	NTPase
Sigma54_activat	PF00158.21	gi|385804588|ref|YP_005840988.1|	-	0.0051	16.2	0.2	0.068	12.6	0.0	2.4	2	1	0	2	2	2	1	Sigma-54	interaction	domain
NB-ARC	PF00931.17	gi|385804588|ref|YP_005840988.1|	-	0.013	14.3	0.3	0.05	12.4	0.0	2.0	3	0	0	3	3	3	0	NB-ARC	domain
AAA_3	PF07726.6	gi|385804588|ref|YP_005840988.1|	-	0.017	14.6	0.0	0.031	13.8	0.0	1.5	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_25	PF13481.1	gi|385804588|ref|YP_005840988.1|	-	0.018	14.4	8.3	0.26	10.6	0.1	3.6	2	2	1	3	3	3	0	AAA	domain
Torsin	PF06309.6	gi|385804588|ref|YP_005840988.1|	-	0.033	14.0	0.0	0.064	13.1	0.0	1.4	1	0	0	1	1	1	0	Torsin
CPT	PF07931.7	gi|385804588|ref|YP_005840988.1|	-	0.034	13.7	0.0	0.087	12.4	0.0	1.7	1	0	0	1	1	1	0	Chloramphenicol	phosphotransferase-like	protein
RNA_helicase	PF00910.17	gi|385804588|ref|YP_005840988.1|	-	0.036	14.2	0.0	0.075	13.2	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
AAA_11	PF13086.1	gi|385804588|ref|YP_005840988.1|	-	0.043	13.3	0.1	0.13	11.7	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
Sigma54_activ_2	PF14532.1	gi|385804588|ref|YP_005840988.1|	-	0.047	13.7	0.0	0.16	11.9	0.0	1.9	2	0	0	2	2	1	0	Sigma-54	interaction	domain
ABC_tran	PF00005.22	gi|385804588|ref|YP_005840988.1|	-	0.068	13.4	0.2	0.23	11.7	0.0	2.1	2	1	0	2	2	1	0	ABC	transporter
Bac_DnaA	PF00308.13	gi|385804588|ref|YP_005840988.1|	-	0.083	12.5	0.1	2.1	7.9	0.0	2.3	2	0	0	2	2	2	0	Bacterial	dnaA	protein
KaiC	PF06745.8	gi|385804588|ref|YP_005840988.1|	-	0.13	11.3	1.6	0.86	8.6	0.0	2.5	2	1	1	3	3	3	0	KaiC
Nup54	PF13874.1	gi|385804588|ref|YP_005840988.1|	-	0.14	11.7	1.7	0.3	10.7	0.7	1.8	2	0	0	2	2	2	0	Nucleoporin	complex	subunit	54
IncA	PF04156.9	gi|385804588|ref|YP_005840988.1|	-	0.16	11.5	2.2	0.3	10.6	1.5	1.4	1	0	0	1	1	1	0	IncA	protein
Parvo_NS1	PF01057.12	gi|385804588|ref|YP_005840988.1|	-	0.17	10.7	0.0	0.29	9.9	0.0	1.3	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
Snapin_Pallidin	PF14712.1	gi|385804588|ref|YP_005840988.1|	-	0.22	11.8	3.0	0.53	10.6	1.7	2.1	1	1	0	1	1	1	0	Snapin/Pallidin
AATF-Che1	PF13339.1	gi|385804588|ref|YP_005840988.1|	-	0.22	11.6	3.1	0.25	11.5	1.3	1.8	2	0	0	2	2	1	0	Apoptosis	antagonizing	transcription	factor
DUF972	PF06156.8	gi|385804588|ref|YP_005840988.1|	-	0.29	11.5	3.1	0.74	10.1	2.2	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF972)
zf-HC2	PF13490.1	gi|385804588|ref|YP_005840988.1|	-	0.42	10.6	3.3	0.87	9.5	0.1	2.9	3	0	0	3	3	3	0	Putative	zinc-finger
BLOC1_2	PF10046.4	gi|385804588|ref|YP_005840988.1|	-	0.53	10.4	5.5	0.21	11.7	1.2	2.3	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
dUTPase	PF00692.14	gi|385804589|ref|YP_005840989.1|	-	5.1e-10	38.8	0.0	8e-10	38.2	0.0	1.2	1	0	0	1	1	1	1	dUTPase
DCD	PF06559.6	gi|385804589|ref|YP_005840989.1|	-	0.052	11.9	0.0	0.59	8.4	0.0	2.0	1	1	1	2	2	2	0	2'-deoxycytidine	5'-triphosphate	deaminase	(DCD)
Aconitase	PF00330.15	gi|385804590|ref|YP_005840990.1|	-	3.8e-99	332.2	0.4	5.8e-70	236.0	0.0	2.2	1	1	1	2	2	2	2	Aconitase	family	(aconitate	hydratase)
Aconitase_C	PF00694.14	gi|385804590|ref|YP_005840990.1|	-	1.8e-21	76.5	0.0	3.4e-21	75.7	0.0	1.4	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
Barwin	PF00967.12	gi|385804590|ref|YP_005840990.1|	-	0.094	12.3	0.2	0.36	10.5	0.0	2.0	2	0	0	2	2	2	0	Barwin	family
Acetyltransf_1	PF00583.19	gi|385804591|ref|YP_005840991.1|	-	1.5e-16	60.2	0.0	2e-16	59.7	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
FR47	PF08445.5	gi|385804591|ref|YP_005840991.1|	-	3.8e-09	36.1	0.0	5.9e-09	35.5	0.0	1.2	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_10	PF13673.1	gi|385804591|ref|YP_005840991.1|	-	1.4e-08	34.8	0.0	1.7e-08	34.5	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|385804591|ref|YP_005840991.1|	-	5.2e-05	23.1	0.0	6.5e-05	22.8	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|385804591|ref|YP_005840991.1|	-	0.0001	22.3	0.0	0.00014	21.9	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.1	gi|385804591|ref|YP_005840991.1|	-	0.0049	17.0	0.0	0.0056	16.8	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
DUF3749	PF12568.3	gi|385804591|ref|YP_005840991.1|	-	0.0087	15.6	0.0	0.013	15.0	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|385804591|ref|YP_005840991.1|	-	0.058	13.2	0.0	0.24	11.2	0.0	2.0	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_13	PF13880.1	gi|385804591|ref|YP_005840991.1|	-	0.14	11.9	0.0	0.24	11.1	0.0	1.4	1	0	0	1	1	1	0	ESCO1/2	acetyl-transferase
NAD_binding_8	PF13450.1	gi|385804592|ref|YP_005840992.1|	-	1.5e-14	53.7	0.2	4.1e-14	52.3	0.1	1.9	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Amino_oxidase	PF01593.19	gi|385804592|ref|YP_005840992.1|	-	3.8e-09	36.1	1.3	1.6e-05	24.1	0.0	2.1	1	1	1	2	2	2	2	Flavin	containing	amine	oxidoreductase
DAO	PF01266.19	gi|385804592|ref|YP_005840992.1|	-	1.4e-07	30.7	0.0	4.8e-07	28.9	0.0	1.8	1	1	1	2	2	2	1	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.1	gi|385804592|ref|YP_005840992.1|	-	1.5e-05	25.1	0.4	8.3e-05	22.7	0.2	2.0	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|385804592|ref|YP_005840992.1|	-	5.4e-05	23.0	0.2	0.051	13.3	0.0	2.4	2	0	0	2	2	2	2	FAD-NAD(P)-binding
Pyr_redox_2	PF07992.9	gi|385804592|ref|YP_005840992.1|	-	0.00014	21.8	0.8	0.00014	21.8	0.6	1.8	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.12	gi|385804592|ref|YP_005840992.1|	-	0.0011	18.0	0.2	0.0017	17.4	0.1	1.2	1	0	0	1	1	1	1	Thi4	family
FAD_oxidored	PF12831.2	gi|385804592|ref|YP_005840992.1|	-	0.004	16.2	0.1	0.0053	15.8	0.0	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
3HCDH_N	PF02737.13	gi|385804592|ref|YP_005840992.1|	-	0.0044	16.7	0.0	0.0074	15.9	0.0	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
HI0933_like	PF03486.9	gi|385804592|ref|YP_005840992.1|	-	0.0059	15.1	1.4	0.017	13.5	1.0	1.6	2	0	0	2	2	2	1	HI0933-like	protein
ApbA	PF02558.11	gi|385804592|ref|YP_005840992.1|	-	0.029	13.7	0.1	7.5	5.9	0.0	2.2	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
NAD_binding_7	PF13241.1	gi|385804592|ref|YP_005840992.1|	-	0.031	14.5	0.1	0.08	13.2	0.1	1.9	1	1	0	1	1	1	0	Putative	NAD(P)-binding
FAD_binding_3	PF01494.14	gi|385804592|ref|YP_005840992.1|	-	0.045	12.8	0.4	0.073	12.1	0.3	1.3	1	0	0	1	1	1	0	FAD	binding	domain
GIDA	PF01134.17	gi|385804592|ref|YP_005840992.1|	-	0.088	11.6	1.6	0.15	10.9	1.1	1.3	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
Shikimate_DH	PF01488.15	gi|385804592|ref|YP_005840992.1|	-	0.11	12.6	0.0	0.23	11.5	0.0	1.4	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
Pyr_redox	PF00070.22	gi|385804592|ref|YP_005840992.1|	-	0.13	12.6	1.5	0.63	10.4	0.2	2.2	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|385804592|ref|YP_005840992.1|	-	0.34	9.7	4.3	0.29	9.9	2.0	1.6	2	0	0	2	2	2	0	FAD	binding	domain
PHP_C	PF13263.1	gi|385804593|ref|YP_005840993.1|	-	1.7e-21	75.4	0.3	8.5e-21	73.2	0.1	2.0	2	0	0	2	2	2	1	PHP-associated
PHP	PF02811.14	gi|385804593|ref|YP_005840993.1|	-	1.8e-14	53.9	0.0	1.3e-13	51.1	0.0	2.0	1	1	0	1	1	1	1	PHP	domain
TfuA	PF07812.7	gi|385804593|ref|YP_005840993.1|	-	0.048	13.0	0.6	0.3	10.5	0.2	2.1	2	0	0	2	2	2	0	TfuA-like	protein
HTH_AsnC-type	PF13404.1	gi|385804594|ref|YP_005840994.1|	-	6.9e-05	22.3	0.1	0.00088	18.7	0.0	2.4	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
Glycos_transf_3	PF00591.16	gi|385804595|ref|YP_005840995.1|	-	1.6e-30	106.3	0.0	3.8e-30	105.1	0.0	1.5	2	0	0	2	2	2	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.12	gi|385804595|ref|YP_005840995.1|	-	7.1e-10	38.3	0.1	4.1e-09	35.8	0.0	2.3	2	0	0	2	2	2	1	Glycosyl	transferase	family,	helical	bundle	domain
Pro_isomerase	PF00160.16	gi|385804596|ref|YP_005840996.1|	-	2.5e-49	167.4	0.0	2.8e-49	167.2	0.0	1.0	1	0	0	1	1	1	1	Cyclophilin	type	peptidyl-prolyl	cis-trans	isomerase/CLD
Fer4_15	PF13459.1	gi|385804597|ref|YP_005840997.1|	-	0.0035	17.8	0.5	0.0035	17.8	0.3	1.9	2	1	0	2	2	2	1	4Fe-4S	single	cluster	domain
IncA	PF04156.9	gi|385804598|ref|YP_005840998.1|	-	0.0079	15.8	1.1	0.013	15.0	0.2	1.8	1	1	0	1	1	1	1	IncA	protein
CoA_binding_3	PF13727.1	gi|385804598|ref|YP_005840998.1|	-	0.14	12.0	3.9	0.29	10.9	0.0	2.5	2	0	0	2	2	2	0	CoA-binding	domain
WHIM2	PF15613.1	gi|385804598|ref|YP_005840998.1|	-	0.24	11.4	1.9	0.62	10.0	1.3	1.7	1	0	0	1	1	1	0	WSTF,	HB1,	Itc1p,	MBD9	motif	2
p450	PF00067.17	gi|385804599|ref|YP_005840999.1|	-	6.1e-73	245.9	0.0	7.9e-73	245.5	0.0	1.0	1	0	0	1	1	1	1	Cytochrome	P450
Radical_SAM	PF04055.16	gi|385804600|ref|YP_005841000.1|	-	2.6e-15	56.9	0.0	4.4e-15	56.2	0.0	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
DUF457	PF04307.9	gi|385804601|ref|YP_005841001.1|	-	1.5e-07	30.9	10.8	2.5e-07	30.1	7.5	1.4	1	1	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
ABC2_membrane_4	PF12730.2	gi|385804601|ref|YP_005841001.1|	-	0.0033	16.6	0.7	0.0059	15.7	0.5	1.5	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
PRA1	PF03208.14	gi|385804601|ref|YP_005841001.1|	-	0.14	11.4	0.1	0.27	10.5	0.1	1.5	1	0	0	1	1	1	0	PRA1	family	protein
Radical_SAM	PF04055.16	gi|385804602|ref|YP_005841002.1|	-	2.9e-10	40.5	0.0	1.2e-09	38.5	0.0	2.0	2	0	0	2	2	2	1	Radical	SAM	superfamily
GPAT_N	PF14829.1	gi|385804602|ref|YP_005841002.1|	-	0.082	12.6	0.0	16	5.2	0.0	2.6	2	0	0	2	2	2	0	Glycerol-3-phosphate	acyltransferase	N-terminal
KdpD	PF02702.12	gi|385804602|ref|YP_005841002.1|	-	0.088	11.9	0.0	0.22	10.6	0.0	1.6	2	0	0	2	2	2	0	Osmosensitive	K+	channel	His	kinase	sensor	domain
SAICAR_synt	PF01259.13	gi|385804603|ref|YP_005841003.1|	-	3.2e-18	65.7	0.0	1.7e-17	63.3	0.0	1.8	1	1	0	1	1	1	1	SAICAR	synthetase
DUF4259	PF14078.1	gi|385804603|ref|YP_005841003.1|	-	0.017	15.6	1.3	0.08	13.4	0.1	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4259)
Formyl_trans_N	PF00551.14	gi|385804604|ref|YP_005841004.1|	-	1.6e-40	138.6	0.0	2.3e-40	138.0	0.0	1.3	1	0	0	1	1	1	1	Formyl	transferase
ACT_6	PF13740.1	gi|385804604|ref|YP_005841004.1|	-	1.7e-10	40.4	0.4	3.7e-10	39.3	0.3	1.5	1	0	0	1	1	1	1	ACT	domain
ACT	PF01842.20	gi|385804604|ref|YP_005841004.1|	-	1.6e-07	30.6	1.1	4e-07	29.3	0.2	2.2	2	0	0	2	2	2	1	ACT	domain
ACT_4	PF13291.1	gi|385804604|ref|YP_005841004.1|	-	0.00021	21.5	0.3	0.00068	19.9	0.2	1.8	1	0	0	1	1	1	1	ACT	domain
Glyco_transf_28	PF03033.15	gi|385804604|ref|YP_005841004.1|	-	0.036	13.8	0.0	0.093	12.4	0.0	1.7	1	0	0	1	1	1	0	Glycosyltransferase	family	28	N-terminal	domain
ACT_7	PF13840.1	gi|385804604|ref|YP_005841004.1|	-	0.043	13.3	0.1	0.11	12.0	0.0	1.6	1	0	0	1	1	1	0	ACT	domain
MTS_N	PF08468.6	gi|385804604|ref|YP_005841004.1|	-	0.07	12.9	0.0	0.69	9.7	0.0	2.1	1	1	1	2	2	2	0	Methyltransferase	small	domain	N-terminal
PurS	PF02700.9	gi|385804605|ref|YP_005841005.1|	-	1.4e-26	92.1	0.0	1.7e-26	91.9	0.0	1.0	1	0	0	1	1	1	1	Phosphoribosylformylglycinamidine	(FGAM)	synthase
AP_endonuc_2	PF01261.19	gi|385804605|ref|YP_005841005.1|	-	0.014	14.6	0.1	0.015	14.5	0.0	1.1	1	0	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
DUF1822	PF08852.6	gi|385804605|ref|YP_005841005.1|	-	0.085	11.6	0.0	0.086	11.6	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1822)
AP2	PF00847.15	gi|385804605|ref|YP_005841005.1|	-	0.54	10.4	3.3	13	5.9	0.9	2.1	1	1	1	2	2	2	0	AP2	domain
GATase_5	PF13507.1	gi|385804606|ref|YP_005841006.1|	-	6.7e-45	153.0	0.0	8.1e-45	152.7	0.0	1.0	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase	PF00117.23	gi|385804606|ref|YP_005841006.1|	-	5.6e-09	35.7	0.0	7.1e-09	35.3	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.9	gi|385804606|ref|YP_005841006.1|	-	3.1e-06	26.8	0.0	5.1e-06	26.1	0.0	1.4	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
Peptidase_C26	PF07722.8	gi|385804606|ref|YP_005841006.1|	-	0.00032	20.1	0.1	0.0011	18.4	0.1	1.7	1	1	0	1	1	1	1	Peptidase	C26
DUF4066	PF13278.1	gi|385804606|ref|YP_005841006.1|	-	0.0019	17.4	0.0	0.0027	16.9	0.0	1.3	1	0	0	1	1	1	1	Putative	amidotransferase
DJ-1_PfpI	PF01965.19	gi|385804606|ref|YP_005841006.1|	-	0.0044	16.4	0.0	0.0064	15.9	0.0	1.3	1	0	0	1	1	1	1	DJ-1/PfpI	family
AfsA	PF03756.8	gi|385804608|ref|YP_005841008.1|	-	0.0045	16.7	1.2	0.049	13.3	0.0	2.9	3	0	0	3	3	3	1	A-factor	biosynthesis	hotdog	domain
CarboxypepD_reg	PF13620.1	gi|385804608|ref|YP_005841008.1|	-	1.7	8.7	8.4	3.6	7.7	0.4	3.8	3	1	0	3	3	3	0	Carboxypeptidase	regulatory-like	domain
Lactamase_B	PF00753.22	gi|385804610|ref|YP_005841010.1|	-	2.6e-21	76.1	2.8	4.4e-21	75.4	1.9	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|385804610|ref|YP_005841010.1|	-	1.2e-05	24.9	0.2	2e-05	24.2	0.2	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
PDEase_II	PF02112.10	gi|385804610|ref|YP_005841010.1|	-	0.14	11.0	0.5	0.43	9.4	0.2	1.7	2	0	0	2	2	2	0	cAMP	phosphodiesterases	class-II
tRNA-synt_2b	PF00587.20	gi|385804611|ref|YP_005841011.1|	-	1.9e-34	118.7	0.0	2.6e-34	118.2	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
Seryl_tRNA_N	PF02403.17	gi|385804611|ref|YP_005841011.1|	-	9.8e-28	96.3	6.0	1.4e-27	95.8	4.2	1.2	1	0	0	1	1	1	1	Seryl-tRNA	synthetase	N-terminal	domain
DUF342	PF03961.8	gi|385804611|ref|YP_005841011.1|	-	0.091	11.1	1.1	0.13	10.6	0.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
tRNA-synt_His	PF13393.1	gi|385804611|ref|YP_005841011.1|	-	0.15	11.1	1.3	1.7	7.5	0.0	2.1	2	0	0	2	2	2	0	Histidyl-tRNA	synthetase
Mnd1	PF03962.10	gi|385804611|ref|YP_005841011.1|	-	0.2	11.3	3.8	0.32	10.6	2.6	1.2	1	0	0	1	1	1	0	Mnd1	family
DUF4391	PF14335.1	gi|385804611|ref|YP_005841011.1|	-	0.22	10.8	1.2	0.33	10.2	0.8	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4391)
LUC7	PF03194.10	gi|385804611|ref|YP_005841011.1|	-	0.28	10.6	2.3	0.42	10.1	1.6	1.1	1	0	0	1	1	1	0	LUC7	N_terminus
DUF904	PF06005.7	gi|385804611|ref|YP_005841011.1|	-	0.79	10.0	7.6	78	3.6	5.2	2.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF904)
DUF367	PF04034.8	gi|385804612|ref|YP_005841012.1|	-	5e-42	142.5	0.0	6.3e-42	142.1	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF367)
RLI	PF04068.10	gi|385804612|ref|YP_005841012.1|	-	3.6e-09	36.0	0.0	5.4e-09	35.4	0.0	1.3	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
MMR_HSR1	PF01926.18	gi|385804613|ref|YP_005841013.1|	-	1.6e-20	73.1	0.0	3.4e-20	72.1	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
NOG1	PF06858.9	gi|385804613|ref|YP_005841013.1|	-	1.2e-17	63.5	0.0	2.4e-17	62.5	0.0	1.6	1	0	0	1	1	1	1	Nucleolar	GTP-binding	protein	1	(NOG1)
FeoB_N	PF02421.13	gi|385804613|ref|YP_005841013.1|	-	1.2e-12	47.4	0.0	1.7e-12	46.8	0.0	1.3	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
Dynamin_N	PF00350.18	gi|385804613|ref|YP_005841013.1|	-	2.2e-08	34.0	0.4	0.0023	17.7	0.0	3.2	2	1	1	3	3	3	2	Dynamin	family
Miro	PF08477.8	gi|385804613|ref|YP_005841013.1|	-	7.6e-06	26.4	0.0	1.8e-05	25.1	0.0	1.7	1	0	0	1	1	1	1	Miro-like	protein
AIG1	PF04548.11	gi|385804613|ref|YP_005841013.1|	-	0.0011	18.1	0.0	0.0018	17.3	0.0	1.5	1	0	0	1	1	1	1	AIG1	family
AAA_16	PF13191.1	gi|385804613|ref|YP_005841013.1|	-	0.0083	16.1	0.1	0.1	12.5	0.0	2.5	1	1	1	2	2	2	1	AAA	ATPase	domain
GTP_EFTU	PF00009.22	gi|385804613|ref|YP_005841013.1|	-	0.043	13.2	0.0	3.7	6.9	0.0	2.9	1	1	1	2	2	2	0	Elongation	factor	Tu	GTP	binding	domain
DUF258	PF03193.11	gi|385804613|ref|YP_005841013.1|	-	0.053	12.7	0.0	0.18	10.9	0.0	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function,	DUF258
Ras	PF00071.17	gi|385804613|ref|YP_005841013.1|	-	0.059	12.7	0.0	0.33	10.3	0.0	2.2	1	1	0	1	1	1	0	Ras	family
AAA_17	PF13207.1	gi|385804613|ref|YP_005841013.1|	-	0.15	12.8	0.5	0.85	10.4	0.0	2.3	2	2	0	2	2	2	0	AAA	domain
DUF389	PF04087.9	gi|385804614|ref|YP_005841014.1|	-	3.2e-35	121.1	22.4	3.2e-35	121.1	15.5	2.5	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF389)
DuffyBP_N	PF12377.3	gi|385804614|ref|YP_005841014.1|	-	0.13	12.5	0.0	22	5.3	0.0	2.3	2	0	0	2	2	2	0	Duffy	binding	protein	N	terminal
TrkA_N	PF02254.13	gi|385804616|ref|YP_005841016.1|	-	4.5e-25	87.9	1.0	7.5e-25	87.1	0.7	1.4	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.16	gi|385804616|ref|YP_005841016.1|	-	1.6e-08	34.0	1.0	4e-08	32.7	0.1	2.0	2	0	0	2	2	2	1	TrkA-C	domain
DAO	PF01266.19	gi|385804616|ref|YP_005841016.1|	-	1.5e-07	30.6	0.4	1.9e-07	30.3	0.3	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
NAD_binding_7	PF13241.1	gi|385804616|ref|YP_005841016.1|	-	1.6e-06	28.3	0.3	3.1e-06	27.3	0.2	1.5	1	0	0	1	1	1	1	Putative	NAD(P)-binding
FAD_binding_3	PF01494.14	gi|385804616|ref|YP_005841016.1|	-	2.2e-06	26.9	0.1	2.7e-06	26.6	0.1	1.2	1	0	0	1	1	1	1	FAD	binding	domain
AdoHcyase_NAD	PF00670.16	gi|385804616|ref|YP_005841016.1|	-	2.1e-05	24.3	0.5	0.00011	22.0	0.2	2.0	1	1	1	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.9	gi|385804616|ref|YP_005841016.1|	-	9.5e-05	21.8	0.2	0.00018	20.9	0.1	1.5	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_10	PF13460.1	gi|385804616|ref|YP_005841016.1|	-	0.00013	21.9	2.3	0.00025	21.0	1.1	1.7	1	1	1	2	2	2	1	NADH(P)-binding
Pyr_redox	PF00070.22	gi|385804616|ref|YP_005841016.1|	-	0.00049	20.4	0.1	0.0013	19.1	0.1	1.7	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.9	gi|385804616|ref|YP_005841016.1|	-	0.0006	19.7	0.4	0.0013	18.6	0.2	1.8	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.12	gi|385804616|ref|YP_005841016.1|	-	0.00083	18.5	0.1	0.0011	18.1	0.1	1.2	1	0	0	1	1	1	1	Thi4	family
AlaDh_PNT_C	PF01262.16	gi|385804616|ref|YP_005841016.1|	-	0.0014	18.1	0.3	0.0031	17.0	0.1	1.7	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_8	PF13450.1	gi|385804616|ref|YP_005841016.1|	-	0.0015	18.5	0.4	0.0015	18.5	0.3	1.7	2	0	0	2	2	1	1	NAD(P)-binding	Rossmann-like	domain
3HCDH_N	PF02737.13	gi|385804616|ref|YP_005841016.1|	-	0.0021	17.7	0.3	0.0044	16.6	0.2	1.6	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.10	gi|385804616|ref|YP_005841016.1|	-	0.0028	17.4	0.7	0.096	12.5	0.1	2.3	1	1	1	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
FAD_binding_2	PF00890.19	gi|385804616|ref|YP_005841016.1|	-	0.0032	16.3	0.8	0.0043	15.9	0.6	1.2	1	0	0	1	1	1	1	FAD	binding	domain
XdhC_C	PF13478.1	gi|385804616|ref|YP_005841016.1|	-	0.0041	17.4	0.1	0.011	16.0	0.1	1.7	2	0	0	2	2	2	1	XdhC	Rossmann	domain
Saccharop_dh	PF03435.13	gi|385804616|ref|YP_005841016.1|	-	0.0043	16.0	0.9	0.016	14.2	0.3	1.8	1	1	1	2	2	2	1	Saccharopine	dehydrogenase
ApbA	PF02558.11	gi|385804616|ref|YP_005841016.1|	-	0.0098	15.3	0.4	0.018	14.4	0.2	1.5	1	1	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
HI0933_like	PF03486.9	gi|385804616|ref|YP_005841016.1|	-	0.016	13.6	0.1	0.029	12.8	0.1	1.4	1	0	0	1	1	1	0	HI0933-like	protein
IlvN	PF07991.7	gi|385804616|ref|YP_005841016.1|	-	0.019	14.3	0.1	0.033	13.5	0.1	1.6	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
Pyr_redox_3	PF13738.1	gi|385804616|ref|YP_005841016.1|	-	0.027	14.5	0.3	0.056	13.5	0.1	1.6	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_Gly3P_dh_N	PF01210.18	gi|385804616|ref|YP_005841016.1|	-	0.058	13.1	0.6	0.11	12.2	0.0	1.8	3	0	0	3	3	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
2-Hacid_dh_C	PF02826.14	gi|385804616|ref|YP_005841016.1|	-	0.064	12.4	0.3	0.15	11.1	0.1	1.7	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.12	gi|385804616|ref|YP_005841016.1|	-	0.075	13.4	0.8	0.21	12.0	0.4	2.1	1	1	1	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
Lycopene_cycl	PF05834.7	gi|385804616|ref|YP_005841016.1|	-	0.083	11.7	1.1	0.085	11.7	0.1	1.5	2	0	0	2	2	2	0	Lycopene	cyclase	protein
CPSase_L_chain	PF00289.17	gi|385804616|ref|YP_005841016.1|	-	0.094	12.8	0.1	0.21	11.6	0.1	1.6	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
UPF0146	PF03686.8	gi|385804616|ref|YP_005841016.1|	-	0.14	12.0	0.8	0.35	10.6	0.2	1.8	1	1	0	2	2	2	0	Uncharacterised	protein	family	(UPF0146)
ABC2_membrane_2	PF12679.2	gi|385804617|ref|YP_005841017.1|	-	0.053	12.3	9.8	0.062	12.1	6.8	1.0	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
Thymidylate_kin	PF02223.12	gi|385804618|ref|YP_005841018.1|	-	3.8e-39	133.9	0.0	4.4e-39	133.7	0.0	1.0	1	0	0	1	1	1	1	Thymidylate	kinase
AAA_33	PF13671.1	gi|385804618|ref|YP_005841018.1|	-	2e-05	24.4	0.0	3.2e-05	23.8	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|385804618|ref|YP_005841018.1|	-	0.00017	21.9	0.0	0.00043	20.5	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.1	gi|385804618|ref|YP_005841018.1|	-	0.00041	20.3	0.1	0.00051	20.0	0.1	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|385804618|ref|YP_005841018.1|	-	0.0036	17.4	0.0	0.01	16.0	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
CPT	PF07931.7	gi|385804618|ref|YP_005841018.1|	-	0.0099	15.5	0.0	0.016	14.8	0.0	1.4	1	0	0	1	1	1	1	Chloramphenicol	phosphotransferase-like	protein
AAA_17	PF13207.1	gi|385804618|ref|YP_005841018.1|	-	0.012	16.3	0.1	0.026	15.3	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|385804618|ref|YP_005841018.1|	-	0.048	13.2	0.0	0.1	12.1	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
APS_kinase	PF01583.15	gi|385804618|ref|YP_005841018.1|	-	0.06	13.0	0.0	0.089	12.4	0.0	1.5	1	0	0	1	1	1	0	Adenylylsulphate	kinase
CoaE	PF01121.15	gi|385804618|ref|YP_005841018.1|	-	0.11	11.8	0.1	8.6	5.7	0.0	2.5	2	1	0	2	2	2	0	Dephospho-CoA	kinase
KTI12	PF08433.5	gi|385804618|ref|YP_005841018.1|	-	0.12	11.5	0.0	0.19	10.9	0.0	1.4	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
NAD_binding_10	PF13460.1	gi|385804619|ref|YP_005841019.1|	-	7.5e-27	94.5	0.3	1.9e-26	93.1	0.0	1.7	2	0	0	2	2	2	1	NADH(P)-binding
Epimerase	PF01370.16	gi|385804619|ref|YP_005841019.1|	-	4.7e-18	65.4	0.0	2.3e-17	63.2	0.0	1.9	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|385804619|ref|YP_005841019.1|	-	2.7e-14	52.5	0.0	5.7e-12	44.9	0.0	2.1	1	1	1	2	2	2	2	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.12	gi|385804619|ref|YP_005841019.1|	-	1.8e-13	50.0	0.0	1.4e-06	27.3	0.0	2.2	2	0	0	2	2	2	2	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.7	gi|385804619|ref|YP_005841019.1|	-	5.8e-06	25.4	0.0	0.012	14.5	0.0	2.4	1	1	0	2	2	2	2	Male	sterility	protein
NmrA	PF05368.8	gi|385804619|ref|YP_005841019.1|	-	7.8e-06	25.3	0.0	1.5e-05	24.4	0.0	1.5	1	1	0	1	1	1	1	NmrA-like	family
Polysacc_synt_2	PF02719.10	gi|385804619|ref|YP_005841019.1|	-	0.00015	20.7	0.1	0.0011	17.9	0.1	2.1	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
adh_short	PF00106.20	gi|385804619|ref|YP_005841019.1|	-	0.00016	21.6	0.0	0.00055	19.8	0.0	1.7	1	1	0	1	1	1	1	short	chain	dehydrogenase
Pyr_redox	PF00070.22	gi|385804619|ref|YP_005841019.1|	-	0.0066	16.8	0.0	0.016	15.5	0.0	1.7	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
F420_oxidored	PF03807.12	gi|385804619|ref|YP_005841019.1|	-	0.011	16.0	0.0	0.052	13.9	0.0	2.0	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
TrkA_N	PF02254.13	gi|385804619|ref|YP_005841019.1|	-	0.011	15.6	0.0	0.023	14.7	0.0	1.5	1	0	0	1	1	1	0	TrkA-N	domain
ApbA	PF02558.11	gi|385804619|ref|YP_005841019.1|	-	0.014	14.8	0.0	0.025	14.0	0.0	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Glyco_trans_4_4	PF13579.1	gi|385804619|ref|YP_005841019.1|	-	0.028	14.5	0.0	0.041	14.0	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	transferase	4-like	domain
DAO	PF01266.19	gi|385804619|ref|YP_005841019.1|	-	0.028	13.3	0.0	0.21	10.4	0.0	2.0	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
UDPG_MGDP_dh_N	PF03721.9	gi|385804619|ref|YP_005841019.1|	-	0.038	13.3	0.0	0.069	12.5	0.0	1.4	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Glyco_transf_4	PF13439.1	gi|385804619|ref|YP_005841019.1|	-	0.043	13.5	0.0	0.079	12.6	0.0	1.4	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
CPSase_L_chain	PF00289.17	gi|385804619|ref|YP_005841019.1|	-	0.074	13.1	0.0	0.16	12.0	0.0	1.6	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
NAD_binding_2	PF03446.10	gi|385804619|ref|YP_005841019.1|	-	0.12	12.1	0.0	0.22	11.3	0.0	1.4	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Tubulin	PF00091.20	gi|385804620|ref|YP_005841020.1|	-	5.1e-27	95.1	0.1	1.4e-26	93.6	0.0	1.7	1	1	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
DUF4398	PF14346.1	gi|385804621|ref|YP_005841021.1|	-	0.00073	19.5	4.4	0.0013	18.7	3.1	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4398)
DUF1771	PF08590.5	gi|385804621|ref|YP_005841021.1|	-	0.016	15.1	1.2	0.027	14.4	0.9	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1771)
DUF3708	PF12501.3	gi|385804621|ref|YP_005841021.1|	-	0.027	14.3	1.3	0.062	13.1	0.9	1.6	1	0	0	1	1	1	0	Phosphate	ATP-binding	cassette	transporter
Rsd_AlgQ	PF04353.8	gi|385804621|ref|YP_005841021.1|	-	0.091	12.4	0.1	0.17	11.6	0.0	1.3	1	0	0	1	1	1	0	Regulator	of	RNA	polymerase	sigma(70)	subunit,	Rsd/AlgQ
PTS_IIA	PF02255.11	gi|385804621|ref|YP_005841021.1|	-	0.12	12.3	3.8	0.11	12.3	1.5	1.8	1	1	1	2	2	2	0	PTS	system,	Lactose/Cellobiose	specific	IIA	subunit
HemY_N	PF07219.8	gi|385804621|ref|YP_005841021.1|	-	0.32	10.5	2.6	0.3	10.6	0.3	2.0	2	0	0	2	2	2	0	HemY	protein	N-terminus
CofC	PF01983.11	gi|385804622|ref|YP_005841022.1|	-	1.3e-36	125.6	0.0	1.2e-27	96.2	0.0	2.1	2	0	0	2	2	2	2	Guanylyl	transferase	CofC	like
NTP_transf_3	PF12804.2	gi|385804622|ref|YP_005841022.1|	-	0.0083	16.2	0.1	0.027	14.5	0.1	1.8	1	1	0	1	1	1	1	MobA-like	NTP	transferase	domain
DUF3236	PF11576.3	gi|385804622|ref|YP_005841022.1|	-	0.023	14.1	0.1	0.051	12.9	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3236)
CDC48_N	PF02359.13	gi|385804622|ref|YP_005841022.1|	-	0.064	13.2	0.1	0.33	10.9	0.0	2.1	2	0	0	2	2	2	0	Cell	division	protein	48	(CDC48),	N-terminal	domain
MMR_HSR1	PF01926.18	gi|385804623|ref|YP_005841023.1|	-	6.9e-17	61.4	0.0	1e-16	60.9	0.0	1.3	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.13	gi|385804623|ref|YP_005841023.1|	-	1.5e-12	47.0	0.0	2.1e-11	43.3	0.0	2.0	1	1	0	1	1	1	1	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.22	gi|385804623|ref|YP_005841023.1|	-	1.4e-06	27.8	0.0	0.00092	18.6	0.0	2.3	2	1	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
AIG1	PF04548.11	gi|385804623|ref|YP_005841023.1|	-	4.2e-05	22.7	0.0	7.5e-05	21.9	0.0	1.4	1	0	0	1	1	1	1	AIG1	family
DUF258	PF03193.11	gi|385804623|ref|YP_005841023.1|	-	0.0042	16.2	0.1	0.0074	15.4	0.1	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_18	PF13238.1	gi|385804623|ref|YP_005841023.1|	-	0.0069	16.6	0.0	0.011	16.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
ABC_tran	PF00005.22	gi|385804623|ref|YP_005841023.1|	-	0.024	14.9	0.1	0.036	14.3	0.1	1.6	1	1	0	1	1	1	0	ABC	transporter
ATP_bind_1	PF03029.12	gi|385804623|ref|YP_005841023.1|	-	0.033	13.7	0.6	0.69	9.3	0.0	2.2	2	1	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AAA_17	PF13207.1	gi|385804623|ref|YP_005841023.1|	-	0.06	14.1	0.2	0.17	12.6	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|385804623|ref|YP_005841023.1|	-	0.063	12.8	0.0	0.12	11.9	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Dynamin_N	PF00350.18	gi|385804623|ref|YP_005841023.1|	-	0.063	13.0	0.1	0.22	11.3	0.1	1.9	1	1	0	1	1	1	0	Dynamin	family
Miro	PF08477.8	gi|385804623|ref|YP_005841023.1|	-	0.11	13.0	0.1	0.26	11.7	0.1	1.9	1	1	0	1	1	1	0	Miro-like	protein
Arch_ATPase	PF01637.13	gi|385804623|ref|YP_005841023.1|	-	0.12	12.1	0.0	0.3	10.7	0.0	1.6	2	0	0	2	2	2	0	Archaeal	ATPase
Prok-JAB	PF14464.1	gi|385804624|ref|YP_005841024.1|	-	2.4e-13	49.5	0.3	2.4e-13	49.5	0.2	1.6	2	0	0	2	2	2	1	Prokaryotic	homologs	of	the	JAB	domain
JAB	PF01398.16	gi|385804624|ref|YP_005841024.1|	-	2.4e-08	33.7	0.3	4e-08	32.9	0.0	1.5	2	0	0	2	2	2	1	JAB1/Mov34/MPN/PAD-1	ubiquitin	protease
Toxin-JAB1	PF15659.1	gi|385804624|ref|YP_005841024.1|	-	0.043	13.7	1.8	0.28	11.0	0.0	2.1	2	0	0	2	2	2	0	JAB-like	toxin	1
Rhodanese	PF00581.15	gi|385804625|ref|YP_005841025.1|	-	5.3e-15	55.7	0.0	6.6e-15	55.4	0.0	1.1	1	0	0	1	1	1	1	Rhodanese-like	domain
F420_ligase	PF01996.11	gi|385804626|ref|YP_005841026.1|	-	6.5e-65	218.3	0.0	7.4e-65	218.2	0.0	1.0	1	0	0	1	1	1	1	F420-0:Gamma-glutamyl	ligase
Bac_luciferase	PF00296.15	gi|385804627|ref|YP_005841027.1|	-	5.4e-55	186.6	1.9	7.7e-55	186.1	1.3	1.1	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
GFO_IDH_MocA	PF01408.17	gi|385804627|ref|YP_005841027.1|	-	0.07	13.6	0.0	0.16	12.5	0.0	1.6	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
H_PPase	PF03030.11	gi|385804628|ref|YP_005841028.1|	-	0.0097	14.2	1.0	0.01	14.1	0.7	1.0	1	0	0	1	1	1	1	Inorganic	H+	pyrophosphatase
YrhK	PF14145.1	gi|385804628|ref|YP_005841028.1|	-	0.21	11.2	4.6	0.56	9.9	3.2	2.0	1	1	0	1	1	1	0	YrhK-like	protein
ABC2_membrane	PF01061.19	gi|385804628|ref|YP_005841028.1|	-	1.5	7.9	9.0	1.8	7.6	6.2	1.1	1	0	0	1	1	1	0	ABC-2	type	transporter
Zn_Tnp_IS1595	PF12760.2	gi|385804629|ref|YP_005841029.1|	-	0.0057	16.4	1.9	0.0091	15.7	1.3	1.3	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Nudix_N_2	PF14803.1	gi|385804629|ref|YP_005841029.1|	-	0.24	11.1	3.1	0.16	11.6	0.6	1.9	2	1	0	2	2	2	0	Nudix	N-terminal
Zn_Tnp_IS91	PF14319.1	gi|385804629|ref|YP_005841029.1|	-	0.42	10.1	2.8	0.27	10.7	1.0	1.5	1	1	0	1	1	1	0	Transposase	zinc-binding	domain
Mucin	PF01456.12	gi|385804629|ref|YP_005841029.1|	-	2.4	7.9	15.4	3.4	7.4	10.7	1.2	1	0	0	1	1	1	0	Mucin-like	glycoprotein
MutL_C	PF08676.6	gi|385804630|ref|YP_005841030.1|	-	1.9e-27	95.6	0.0	4.4e-27	94.4	0.0	1.6	1	0	0	1	1	1	1	MutL	C	terminal	dimerisation	domain
DNA_mis_repair	PF01119.14	gi|385804630|ref|YP_005841030.1|	-	1.5e-26	92.1	0.1	2.6e-26	91.3	0.0	1.4	1	0	0	1	1	1	1	DNA	mismatch	repair	protein,	C-terminal	domain
HATPase_c_3	PF13589.1	gi|385804630|ref|YP_005841030.1|	-	5.4e-13	48.7	0.6	2.4e-12	46.6	0.1	2.1	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.21	gi|385804630|ref|YP_005841030.1|	-	7.2e-09	35.3	0.1	1.7e-08	34.1	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
MutS_V	PF00488.16	gi|385804631|ref|YP_005841031.1|	-	4.4e-91	304.4	0.2	8e-91	303.6	0.2	1.4	1	0	0	1	1	1	1	MutS	domain	V
MutS_III	PF05192.13	gi|385804631|ref|YP_005841031.1|	-	2.9e-40	138.2	4.0	7.3e-40	136.9	2.8	1.7	1	0	0	1	1	1	1	MutS	domain	III
MutS_I	PF01624.15	gi|385804631|ref|YP_005841031.1|	-	7.2e-34	116.2	0.0	1.6e-33	115.1	0.0	1.6	1	0	0	1	1	1	1	MutS	domain	I
MutS_IV	PF05190.13	gi|385804631|ref|YP_005841031.1|	-	5.5e-27	93.7	0.4	1.9e-26	92.0	0.1	2.1	2	0	0	2	2	2	1	MutS	family	domain	IV
MutS_II	PF05188.12	gi|385804631|ref|YP_005841031.1|	-	5.9e-11	42.5	0.0	1.5e-10	41.3	0.0	1.7	1	0	0	1	1	1	1	MutS	domain	II
AAA_29	PF13555.1	gi|385804631|ref|YP_005841031.1|	-	0.02	14.4	0.0	0.047	13.2	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ABC_tran	PF00005.22	gi|385804631|ref|YP_005841031.1|	-	0.027	14.7	0.0	0.11	12.7	0.0	2.1	1	1	0	1	1	1	0	ABC	transporter
AAA_14	PF13173.1	gi|385804631|ref|YP_005841031.1|	-	0.028	14.3	0.0	0.072	12.9	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_23	PF13476.1	gi|385804631|ref|YP_005841031.1|	-	0.046	14.0	0.3	0.54	10.5	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_3	PF07726.6	gi|385804632|ref|YP_005841032.1|	-	4.4e-59	197.7	0.3	7.9e-59	196.9	0.2	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|385804632|ref|YP_005841032.1|	-	1.7e-12	47.2	0.0	7e-12	45.2	0.0	2.0	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.24	gi|385804632|ref|YP_005841032.1|	-	1.2e-07	31.9	0.0	1.1e-06	28.8	0.0	2.3	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.21	gi|385804632|ref|YP_005841032.1|	-	3.1e-05	23.5	0.0	0.0031	16.9	0.0	2.3	2	0	0	2	2	2	1	Sigma-54	interaction	domain
MCM	PF00493.18	gi|385804632|ref|YP_005841032.1|	-	0.00044	19.1	0.0	0.12	11.1	0.0	2.4	2	1	0	2	2	2	2	MCM2/3/5	family
Mg_chelatase	PF01078.16	gi|385804632|ref|YP_005841032.1|	-	0.00075	18.7	0.1	0.0027	16.8	0.0	1.9	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
RuvB_N	PF05496.7	gi|385804632|ref|YP_005841032.1|	-	0.002	17.2	0.1	0.011	14.7	0.0	2.2	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_22	PF13401.1	gi|385804632|ref|YP_005841032.1|	-	0.025	14.7	0.1	0.32	11.1	0.0	2.5	2	1	1	3	3	3	0	AAA	domain
DUF58	PF01882.13	gi|385804633|ref|YP_005841033.1|	-	1.5e-18	66.7	0.1	2.8e-18	65.8	0.1	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
Transglut_core	PF01841.14	gi|385804634|ref|YP_005841034.1|	-	2.3e-27	95.4	1.4	5.1e-27	94.3	0.0	2.3	3	1	1	4	4	4	1	Transglutaminase-like	superfamily
DUF4129	PF13559.1	gi|385804634|ref|YP_005841034.1|	-	3.9e-06	26.7	9.0	7.7e-06	25.7	5.0	2.5	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4129)
Transglut_core3	PF13471.1	gi|385804634|ref|YP_005841034.1|	-	5.8e-06	26.0	0.1	3.2e-05	23.7	0.0	2.2	2	0	0	2	2	2	1	Transglutaminase-like	superfamily
DUF4218	PF13960.1	gi|385804634|ref|YP_005841034.1|	-	0.11	11.9	0.1	0.26	10.7	0.0	1.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4218)
SUI1	PF01253.17	gi|385804635|ref|YP_005841035.1|	-	1.1e-24	86.0	0.0	1.3e-24	85.8	0.0	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	SUI1
Img2	PF05046.9	gi|385804635|ref|YP_005841035.1|	-	0.066	13.4	0.0	0.094	12.9	0.0	1.5	1	1	0	1	1	1	0	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
DTW	PF03942.10	gi|385804635|ref|YP_005841035.1|	-	0.073	12.2	0.3	0.087	12.0	0.2	1.1	1	0	0	1	1	1	0	DTW	domain
DUF2631	PF10939.3	gi|385804635|ref|YP_005841035.1|	-	0.12	12.2	0.1	0.23	11.3	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2631)
NUDIX	PF00293.23	gi|385804636|ref|YP_005841036.1|	-	6.5e-14	51.7	0.1	9e-14	51.2	0.1	1.2	1	0	0	1	1	1	1	NUDIX	domain
DUF3090	PF11290.3	gi|385804638|ref|YP_005841038.1|	-	0.41	10.0	7.7	0.083	12.3	1.8	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3090)
GATase	PF00117.23	gi|385804639|ref|YP_005841039.1|	-	3.9e-42	143.8	0.0	2.2e-30	105.5	0.0	2.0	1	1	1	2	2	2	2	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|385804639|ref|YP_005841039.1|	-	0.00037	19.9	0.0	0.15	11.4	0.0	2.6	2	1	0	2	2	2	2	Peptidase	C26
Chorismate_bind	PF00425.13	gi|385804640|ref|YP_005841040.1|	-	6.9e-87	291.0	0.2	1e-85	287.1	0.0	2.2	2	0	0	2	2	2	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.8	gi|385804640|ref|YP_005841040.1|	-	4.5e-22	78.5	0.9	4.1e-21	75.4	0.0	2.9	3	2	1	4	4	4	1	Anthranilate	synthase	component	I,	N	terminal	region
PRAI	PF00697.17	gi|385804641|ref|YP_005841041.1|	-	1.2e-37	129.4	0.6	1.4e-37	129.1	0.4	1.1	1	0	0	1	1	1	1	N-(5'phosphoribosyl)anthranilate	(PRA)	isomerase
His_biosynth	PF00977.16	gi|385804641|ref|YP_005841041.1|	-	0.02	14.1	2.5	0.14	11.3	1.7	2.4	1	1	0	1	1	1	0	Histidine	biosynthesis	protein
TMP-TENI	PF02581.12	gi|385804641|ref|YP_005841041.1|	-	0.047	12.8	3.2	0.039	13.0	0.7	1.8	1	1	0	2	2	2	0	Thiamine	monophosphate	synthase/TENI
Tim44	PF04280.10	gi|385804641|ref|YP_005841041.1|	-	0.049	13.6	0.0	0.094	12.7	0.0	1.4	1	0	0	1	1	1	0	Tim44-like	domain
GFO_IDH_MocA	PF01408.17	gi|385804641|ref|YP_005841041.1|	-	0.058	13.9	1.3	0.74	10.3	0.0	2.7	2	1	1	3	3	3	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Glycos_transf_3	PF00591.16	gi|385804642|ref|YP_005841042.1|	-	2.7e-92	308.7	2.9	3.4e-92	308.4	2.0	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.12	gi|385804642|ref|YP_005841042.1|	-	1e-15	57.0	1.2	1e-15	57.0	0.8	2.0	2	0	0	2	2	2	1	Glycosyl	transferase	family,	helical	bundle	domain
DUF2717	PF10911.3	gi|385804642|ref|YP_005841042.1|	-	0.055	12.9	0.0	0.14	11.6	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2717)
LMWPc	PF01451.16	gi|385804643|ref|YP_005841043.1|	-	5.7e-28	97.9	0.1	6.7e-28	97.7	0.1	1.1	1	0	0	1	1	1	1	Low	molecular	weight	phosphotyrosine	protein	phosphatase
PAD_N	PF08526.5	gi|385804643|ref|YP_005841043.1|	-	0.066	13.2	0.1	0.084	12.9	0.1	1.2	1	0	0	1	1	1	0	Protein-arginine	deiminase	(PAD)	N-terminal	domain
Fer2	PF00111.22	gi|385804644|ref|YP_005841044.1|	-	3.1e-12	46.0	0.2	1.2e-11	44.1	0.0	1.9	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
DnaJ	PF00226.26	gi|385804644|ref|YP_005841044.1|	-	6.6e-10	38.5	0.0	1.1e-09	37.8	0.0	1.4	1	0	0	1	1	1	1	DnaJ	domain
RPT	PF13446.1	gi|385804644|ref|YP_005841044.1|	-	0.0029	16.9	0.0	0.0056	16.0	0.0	1.4	1	0	0	1	1	1	1	A	repeated	domain	in	UCH-protein
Fer2_3	PF13085.1	gi|385804644|ref|YP_005841044.1|	-	0.0084	15.9	0.1	0.018	14.8	0.1	1.5	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
CBS	PF00571.23	gi|385804645|ref|YP_005841045.1|	-	8e-37	124.7	9.1	4.5e-11	42.3	0.1	4.4	4	0	0	4	4	4	4	CBS	domain
Ribosomal_S30AE	PF02482.14	gi|385804645|ref|YP_005841045.1|	-	0.0038	17.6	0.1	0.082	13.3	0.0	2.7	3	1	0	3	3	3	1	Sigma	54	modulation	protein	/	S30EA	ribosomal	protein
Surf_Ag_VNR	PF07244.10	gi|385804645|ref|YP_005841045.1|	-	0.014	15.8	0.0	0.097	13.1	0.0	2.2	2	0	0	2	2	2	0	Surface	antigen	variable	number	repeat
Rad51	PF08423.6	gi|385804646|ref|YP_005841046.1|	-	5.8e-28	97.4	0.2	1.8e-15	56.5	0.1	2.0	2	0	0	2	2	2	2	Rad51
AAA_25	PF13481.1	gi|385804646|ref|YP_005841046.1|	-	3.3e-12	46.2	0.2	9.6e-12	44.7	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
RecA	PF00154.16	gi|385804646|ref|YP_005841046.1|	-	2.5e-08	33.3	0.9	3.6e-08	32.8	0.3	1.5	2	1	0	2	2	2	1	recA	bacterial	DNA	recombination	protein
KaiC	PF06745.8	gi|385804646|ref|YP_005841046.1|	-	9.8e-08	31.3	0.0	1.2e-06	27.7	0.0	2.1	1	1	0	1	1	1	1	KaiC
Zot	PF05707.7	gi|385804646|ref|YP_005841046.1|	-	5.6e-06	25.9	0.0	6.6e-06	25.7	0.0	1.1	1	0	0	1	1	1	1	Zonular	occludens	toxin	(Zot)
DnaB_C	PF03796.10	gi|385804646|ref|YP_005841046.1|	-	6.2e-05	22.0	0.0	0.00029	19.7	0.0	2.0	3	0	0	3	3	3	1	DnaB-like	helicase	C	terminal	domain
PAXNEB	PF05625.6	gi|385804646|ref|YP_005841046.1|	-	0.0069	15.2	0.1	0.018	13.8	0.1	1.6	2	0	0	2	2	2	1	PAXNEB	protein
AAA_10	PF12846.2	gi|385804646|ref|YP_005841046.1|	-	0.0077	15.7	0.1	0.49	9.7	0.0	2.3	2	1	0	2	2	2	1	AAA-like	domain
ATP-synt_ab	PF00006.20	gi|385804646|ref|YP_005841046.1|	-	0.014	14.8	0.1	0.021	14.3	0.1	1.2	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_19	PF13245.1	gi|385804646|ref|YP_005841046.1|	-	0.02	14.6	0.0	0.058	13.1	0.0	1.7	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_16	PF13191.1	gi|385804646|ref|YP_005841046.1|	-	0.029	14.3	0.1	0.044	13.7	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
Arch_ATPase	PF01637.13	gi|385804646|ref|YP_005841046.1|	-	0.11	12.1	0.0	0.13	11.9	0.0	1.2	1	0	0	1	1	1	0	Archaeal	ATPase
cobW	PF02492.14	gi|385804646|ref|YP_005841046.1|	-	0.13	11.7	0.1	14	5.0	0.0	2.8	2	1	1	3	3	3	0	CobW/HypB/UreG,	nucleotide-binding	domain
Big_3_3	PF13750.1	gi|385804647|ref|YP_005841047.1|	-	0.036	13.4	0.0	0.062	12.7	0.0	1.3	1	0	0	1	1	1	0	Bacterial	Ig-like	domain	(group	3)
DUF460	PF04312.8	gi|385804647|ref|YP_005841047.1|	-	0.066	12.7	0.3	0.14	11.6	0.2	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF460)
DUF111	PF01969.12	gi|385804648|ref|YP_005841048.1|	-	4.1e-131	437.3	7.6	1.1e-130	435.8	5.3	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	DUF111
DUF1510	PF07423.6	gi|385804648|ref|YP_005841048.1|	-	1.3	8.3	14.2	2.1	7.6	9.8	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1510)
Hid1	PF12722.2	gi|385804648|ref|YP_005841048.1|	-	6.6	4.2	9.6	8.7	3.8	6.7	1.1	1	0	0	1	1	1	0	High-temperature-induced	dauer-formation	protein
AAA	PF00004.24	gi|385804649|ref|YP_005841049.1|	-	4.3e-101	334.3	0.0	1.8e-49	167.2	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.13	gi|385804649|ref|YP_005841049.1|	-	5.8e-29	99.8	0.1	2.9e-28	97.6	0.1	2.2	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
CDC48_2	PF02933.12	gi|385804649|ref|YP_005841049.1|	-	1.7e-15	56.3	0.0	8.1e-15	54.2	0.0	2.2	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	domain	2
RuvB_N	PF05496.7	gi|385804649|ref|YP_005841049.1|	-	3.6e-15	55.6	0.0	5.4e-07	28.9	0.0	2.8	3	0	0	3	3	3	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_22	PF13401.1	gi|385804649|ref|YP_005841049.1|	-	7.2e-15	55.2	0.2	9.6e-05	22.5	0.1	4.4	2	2	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|385804649|ref|YP_005841049.1|	-	9.7e-15	55.0	0.0	4e-07	30.1	0.0	3.4	2	1	0	2	2	2	2	AAA	ATPase	domain
AAA_5	PF07728.9	gi|385804649|ref|YP_005841049.1|	-	2.3e-14	53.2	0.5	5.8e-06	26.0	0.0	3.9	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_2	PF07724.9	gi|385804649|ref|YP_005841049.1|	-	8.9e-13	48.4	0.0	1.4e-05	25.0	0.0	2.7	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_17	PF13207.1	gi|385804649|ref|YP_005841049.1|	-	1.9e-12	48.0	0.1	0.00016	22.4	0.0	3.1	3	1	0	3	3	2	2	AAA	domain
TIP49	PF06068.8	gi|385804649|ref|YP_005841049.1|	-	1.1e-11	44.1	0.0	2.8e-05	23.0	0.0	3.0	3	0	0	3	3	3	2	TIP49	C-terminus
AAA_33	PF13671.1	gi|385804649|ref|YP_005841049.1|	-	2.9e-11	43.4	0.0	8e-05	22.5	0.0	2.9	3	0	0	3	3	2	2	AAA	domain
AAA_14	PF13173.1	gi|385804649|ref|YP_005841049.1|	-	3.8e-10	39.7	0.0	0.00026	20.8	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
AAA_19	PF13245.1	gi|385804649|ref|YP_005841049.1|	-	2.9e-09	36.5	4.3	0.0012	18.5	0.1	3.6	3	0	0	3	3	3	2	Part	of	AAA	domain
IstB_IS21	PF01695.12	gi|385804649|ref|YP_005841049.1|	-	6.9e-09	35.3	0.0	0.0041	16.5	0.0	2.5	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_25	PF13481.1	gi|385804649|ref|YP_005841049.1|	-	5.5e-08	32.4	5.6	0.94	8.8	0.1	4.4	2	2	1	4	4	4	3	AAA	domain
Zeta_toxin	PF06414.7	gi|385804649|ref|YP_005841049.1|	-	5.6e-08	32.1	0.5	0.0045	16.0	0.0	2.9	3	0	0	3	3	2	2	Zeta	toxin
AAA_18	PF13238.1	gi|385804649|ref|YP_005841049.1|	-	6.4e-08	32.9	0.0	0.0073	16.6	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
Mg_chelatase	PF01078.16	gi|385804649|ref|YP_005841049.1|	-	6.9e-07	28.6	0.1	0.038	13.1	0.0	2.7	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_28	PF13521.1	gi|385804649|ref|YP_005841049.1|	-	9.2e-07	28.9	0.2	0.014	15.3	0.0	2.7	3	0	0	3	3	2	2	AAA	domain
RNA_helicase	PF00910.17	gi|385804649|ref|YP_005841049.1|	-	1.2e-06	28.6	0.0	0.057	13.5	0.0	2.5	2	0	0	2	2	2	2	RNA	helicase
Sigma54_activat	PF00158.21	gi|385804649|ref|YP_005841049.1|	-	2.9e-06	26.8	0.1	0.094	12.1	0.0	3.3	3	1	0	3	3	2	2	Sigma-54	interaction	domain
NB-ARC	PF00931.17	gi|385804649|ref|YP_005841049.1|	-	4.4e-06	25.7	0.0	0.036	12.9	0.0	2.2	2	0	0	2	2	2	2	NB-ARC	domain
PhoH	PF02562.11	gi|385804649|ref|YP_005841049.1|	-	6.9e-06	25.4	0.4	0.16	11.1	0.0	3.2	3	0	0	3	3	3	2	PhoH-like	protein
AAA_3	PF07726.6	gi|385804649|ref|YP_005841049.1|	-	1.1e-05	24.9	0.0	0.15	11.6	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
KaiC	PF06745.8	gi|385804649|ref|YP_005841049.1|	-	1.3e-05	24.3	1.0	0.43	9.6	0.0	3.6	2	1	1	3	3	3	2	KaiC
Arch_ATPase	PF01637.13	gi|385804649|ref|YP_005841049.1|	-	1.4e-05	24.9	0.0	0.12	12.0	0.0	3.6	2	2	1	3	3	3	1	Archaeal	ATPase
ABC_tran	PF00005.22	gi|385804649|ref|YP_005841049.1|	-	1.7e-05	25.1	0.0	0.39	11.0	0.0	2.9	2	0	0	2	2	2	2	ABC	transporter
Sigma54_activ_2	PF14532.1	gi|385804649|ref|YP_005841049.1|	-	1.7e-05	24.9	0.0	0.3	11.1	0.0	2.5	2	0	0	2	2	2	2	Sigma-54	interaction	domain
DUF815	PF05673.8	gi|385804649|ref|YP_005841049.1|	-	3.4e-05	22.8	0.0	0.3	9.9	0.0	2.6	2	1	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
DUF2075	PF09848.4	gi|385804649|ref|YP_005841049.1|	-	3.9e-05	22.8	0.0	0.25	10.2	0.0	2.6	3	0	0	3	3	2	2	Uncharacterized	conserved	protein	(DUF2075)
AAA_24	PF13479.1	gi|385804649|ref|YP_005841049.1|	-	4.6e-05	23.1	0.2	0.13	11.8	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
SKI	PF01202.17	gi|385804649|ref|YP_005841049.1|	-	5.4e-05	23.1	0.0	0.28	11.0	0.0	2.5	2	0	0	2	2	2	2	Shikimate	kinase
NACHT	PF05729.7	gi|385804649|ref|YP_005841049.1|	-	8.6e-05	22.2	0.1	0.26	10.9	0.0	3.5	4	0	0	4	4	4	1	NACHT	domain
AAA_11	PF13086.1	gi|385804649|ref|YP_005841049.1|	-	0.0001	22.0	0.0	0.51	9.8	0.0	2.4	2	1	0	2	2	2	2	AAA	domain
Parvo_NS1	PF01057.12	gi|385804649|ref|YP_005841049.1|	-	0.00016	20.6	0.1	0.2	10.4	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
NTPase_1	PF03266.10	gi|385804649|ref|YP_005841049.1|	-	0.00027	20.7	0.6	1.8	8.2	0.0	3.7	3	1	1	4	4	3	2	NTPase
AAA_30	PF13604.1	gi|385804649|ref|YP_005841049.1|	-	0.00037	20.1	0.8	0.89	9.0	0.0	3.1	3	0	0	3	3	2	2	AAA	domain
Bac_DnaA	PF00308.13	gi|385804649|ref|YP_005841049.1|	-	0.0016	18.1	0.0	2.3	7.8	0.0	3.1	3	0	0	3	3	3	1	Bacterial	dnaA	protein
ResIII	PF04851.10	gi|385804649|ref|YP_005841049.1|	-	0.0016	18.2	0.0	2	8.2	0.0	2.4	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
IPT	PF01745.11	gi|385804649|ref|YP_005841049.1|	-	0.003	16.7	0.8	0.97	8.5	0.0	2.8	3	0	0	3	3	3	1	Isopentenyl	transferase
UPF0079	PF02367.12	gi|385804649|ref|YP_005841049.1|	-	0.0031	17.1	0.1	1.6	8.3	0.0	2.4	2	0	0	2	2	2	1	Uncharacterised	P-loop	hydrolase	UPF0079
ATP-synt_ab	PF00006.20	gi|385804649|ref|YP_005841049.1|	-	0.0044	16.5	0.0	1.5	8.3	0.0	2.4	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Cytidylate_kin2	PF13189.1	gi|385804649|ref|YP_005841049.1|	-	0.0052	16.6	0.0	1.3	8.8	0.0	2.3	2	0	0	2	2	2	1	Cytidylate	kinase-like	family
KAP_NTPase	PF07693.9	gi|385804649|ref|YP_005841049.1|	-	0.0068	15.4	0.1	2.8	6.8	0.0	3.3	2	2	0	3	3	3	1	KAP	family	P-loop	domain
T2SE	PF00437.15	gi|385804649|ref|YP_005841049.1|	-	0.015	14.2	0.0	4.6	6.0	0.0	2.5	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
Torsin	PF06309.6	gi|385804649|ref|YP_005841049.1|	-	0.016	15.1	0.0	3.8	7.4	0.0	2.7	3	0	0	3	3	2	0	Torsin
CPT	PF07931.7	gi|385804649|ref|YP_005841049.1|	-	0.019	14.5	0.0	3.1	7.3	0.0	2.5	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
KTI12	PF08433.5	gi|385804649|ref|YP_005841049.1|	-	0.021	14.0	0.0	11	5.1	0.0	3.0	3	0	0	3	3	3	0	Chromatin	associated	protein	KTI12
Viral_helicase1	PF01443.13	gi|385804649|ref|YP_005841049.1|	-	0.04	13.4	0.0	3.5	7.0	0.0	2.2	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
AFG1_ATPase	PF03969.11	gi|385804649|ref|YP_005841049.1|	-	0.041	12.6	0.1	1.8	7.2	0.0	2.2	2	0	0	2	2	2	0	AFG1-like	ATPase
Guanylate_kin	PF00625.16	gi|385804649|ref|YP_005841049.1|	-	0.058	12.8	0.2	36	3.7	0.0	3.5	2	1	1	3	3	3	0	Guanylate	kinase
PUA	PF01472.15	gi|385804650|ref|YP_005841050.1|	-	5.9e-17	61.1	2.6	9.7e-17	60.4	1.8	1.4	1	0	0	1	1	1	1	PUA	domain
UL11	PF11094.3	gi|385804650|ref|YP_005841050.1|	-	0.86	9.4	3.4	0.9	9.4	0.1	2.6	3	0	0	3	3	3	0	Membrane-associated	tegument	protein
DUF2387	PF09526.5	gi|385804651|ref|YP_005841051.1|	-	0.052	13.4	0.3	0.095	12.6	0.2	1.5	1	0	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
BIR	PF00653.16	gi|385804651|ref|YP_005841051.1|	-	0.11	12.9	0.8	0.19	12.1	0.5	1.4	1	0	0	1	1	1	0	Inhibitor	of	Apoptosis	domain
zf-B_box	PF00643.19	gi|385804651|ref|YP_005841051.1|	-	0.18	11.6	2.4	0.8	9.6	0.5	2.2	2	0	0	2	2	2	0	B-box	zinc	finger
Ribosomal_S27e	PF01667.12	gi|385804651|ref|YP_005841051.1|	-	0.31	10.6	2.0	1.1	8.7	0.4	2.1	2	0	0	2	2	2	0	Ribosomal	protein	S27
Tnp_zf-ribbon_2	PF13842.1	gi|385804651|ref|YP_005841051.1|	-	1.8	9.0	4.9	4.3	7.8	0.4	2.3	2	0	0	2	2	2	0	DDE_Tnp_1-like	zinc-ribbon
DZR	PF12773.2	gi|385804651|ref|YP_005841051.1|	-	9.6	6.1	7.7	4.3	7.2	2.8	2.2	2	1	0	2	2	2	0	Double	zinc	ribbon
RNB	PF00773.14	gi|385804652|ref|YP_005841052.1|	-	8.2e-81	271.7	0.4	1.4e-50	172.4	0.2	2.4	1	1	1	2	2	2	2	RNB	domain
DUF982	PF06169.7	gi|385804652|ref|YP_005841052.1|	-	0.023	14.4	0.0	0.051	13.3	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF982)
FF	PF01846.14	gi|385804652|ref|YP_005841052.1|	-	0.31	11.0	2.1	12	5.9	0.0	3.8	4	0	0	4	4	4	0	FF	domain
Prok-RING_1	PF14446.1	gi|385804653|ref|YP_005841053.1|	-	0.0067	16.1	0.6	0.012	15.3	0.4	1.4	1	0	0	1	1	1	1	Prokaryotic	RING	finger	family	1
zf-P11	PF03854.9	gi|385804653|ref|YP_005841053.1|	-	0.14	11.6	0.2	0.2	11.1	0.2	1.4	1	0	0	1	1	1	0	P-11	zinc	finger
Peripla_BP_6	PF13458.1	gi|385804654|ref|YP_005841054.1|	-	1.4e-50	172.5	2.3	1.8e-50	172.2	1.6	1.0	1	0	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.23	gi|385804654|ref|YP_005841054.1|	-	7.8e-19	67.6	0.5	3.4e-18	65.5	0.3	1.8	1	1	0	1	1	1	1	Receptor	family	ligand	binding	region
Peripla_BP_5	PF13433.1	gi|385804654|ref|YP_005841054.1|	-	6.4e-17	61.3	0.2	1.1e-16	60.5	0.1	1.3	1	1	0	1	1	1	1	Periplasmic	binding	protein	domain
TAT_signal	PF10518.4	gi|385804654|ref|YP_005841054.1|	-	0.025	14.5	5.8	0.14	12.2	4.0	2.3	1	1	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_2	PF02653.11	gi|385804655|ref|YP_005841055.1|	-	1.5e-40	138.8	42.5	1.8e-40	138.6	29.5	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
Internalin_N	PF12354.3	gi|385804655|ref|YP_005841055.1|	-	6.5	6.4	7.7	4.2	7.0	0.9	3.3	2	1	0	2	2	2	0	Bacterial	adhesion/invasion	protein	N	terminal
BPD_transp_2	PF02653.11	gi|385804656|ref|YP_005841056.1|	-	1.4e-35	122.5	36.7	2e-35	122.0	25.5	1.2	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
ABC_tran	PF00005.22	gi|385804657|ref|YP_005841057.1|	-	8e-29	100.6	0.0	1.1e-28	100.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385804657|ref|YP_005841057.1|	-	4.5e-12	46.5	2.0	9.2e-09	35.6	1.4	2.1	1	1	0	1	1	1	1	AAA	domain
BCA_ABC_TP_C	PF12399.3	gi|385804657|ref|YP_005841057.1|	-	2.5e-11	42.9	0.1	5.5e-11	41.8	0.1	1.6	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_23	PF13476.1	gi|385804657|ref|YP_005841057.1|	-	6.8e-06	26.5	0.2	9.8e-06	26.0	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|385804657|ref|YP_005841057.1|	-	4.6e-05	22.8	0.0	9.2e-05	21.9	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
MMR_HSR1	PF01926.18	gi|385804657|ref|YP_005841057.1|	-	6.9e-05	22.7	0.0	0.00014	21.8	0.0	1.6	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
SMC_N	PF02463.14	gi|385804657|ref|YP_005841057.1|	-	0.00013	21.2	0.5	0.0016	17.6	0.3	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
DUF258	PF03193.11	gi|385804657|ref|YP_005841057.1|	-	0.0011	18.1	0.0	0.0017	17.5	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_15	PF13175.1	gi|385804657|ref|YP_005841057.1|	-	0.0014	17.7	0.0	0.66	8.9	0.0	2.1	1	1	0	2	2	2	2	AAA	ATPase	domain
AAA_10	PF12846.2	gi|385804657|ref|YP_005841057.1|	-	0.0045	16.4	0.4	0.028	13.8	0.2	1.9	1	1	0	1	1	1	1	AAA-like	domain
FeoB_N	PF02421.13	gi|385804657|ref|YP_005841057.1|	-	0.0058	15.9	1.1	0.31	10.2	0.1	3.0	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
AAA_16	PF13191.1	gi|385804657|ref|YP_005841057.1|	-	0.0098	15.8	0.0	0.016	15.2	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
RNA_helicase	PF00910.17	gi|385804657|ref|YP_005841057.1|	-	0.025	14.7	0.0	0.054	13.6	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
Miff	PF05644.6	gi|385804657|ref|YP_005841057.1|	-	0.042	13.4	0.0	0.071	12.7	0.0	1.3	1	0	0	1	1	1	0	Mitochondrial	and	peroxisomal	fission	factor	Mff
Mg_chelatase	PF01078.16	gi|385804657|ref|YP_005841057.1|	-	0.058	12.5	0.0	0.15	11.2	0.0	1.6	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
T2SE	PF00437.15	gi|385804657|ref|YP_005841057.1|	-	0.061	12.2	0.1	0.23	10.2	0.0	1.9	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
AAA_13	PF13166.1	gi|385804657|ref|YP_005841057.1|	-	0.066	11.6	0.0	0.39	9.1	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
ArgK	PF03308.11	gi|385804657|ref|YP_005841057.1|	-	0.071	11.8	0.0	0.13	10.9	0.0	1.4	1	0	0	1	1	1	0	ArgK	protein
AAA_30	PF13604.1	gi|385804657|ref|YP_005841057.1|	-	0.085	12.4	0.0	0.32	10.5	0.0	1.8	2	1	0	2	2	2	0	AAA	domain
UPF0079	PF02367.12	gi|385804657|ref|YP_005841057.1|	-	0.13	11.8	0.0	0.26	10.9	0.0	1.5	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
Arch_ATPase	PF01637.13	gi|385804657|ref|YP_005841057.1|	-	0.14	11.8	0.0	0.77	9.4	0.0	1.9	2	1	1	3	3	3	0	Archaeal	ATPase
ABC_tran	PF00005.22	gi|385804658|ref|YP_005841058.1|	-	2.9e-33	115.0	0.0	4e-33	114.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385804658|ref|YP_005841058.1|	-	1.6e-16	61.1	0.4	7.6e-08	32.6	0.1	2.1	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|385804658|ref|YP_005841058.1|	-	1.3e-06	27.8	0.3	7.4e-06	25.3	0.2	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|385804658|ref|YP_005841058.1|	-	7.9e-05	22.1	0.1	0.00018	20.9	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|385804658|ref|YP_005841058.1|	-	0.00021	21.7	0.3	0.00035	20.9	0.2	1.3	1	0	0	1	1	1	1	AAA	domain
DUF258	PF03193.11	gi|385804658|ref|YP_005841058.1|	-	0.00025	20.2	0.0	0.00043	19.4	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_15	PF13175.1	gi|385804658|ref|YP_005841058.1|	-	0.00034	19.7	0.2	0.0062	15.6	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|385804658|ref|YP_005841058.1|	-	0.0015	18.6	0.1	0.0087	16.2	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_10	PF12846.2	gi|385804658|ref|YP_005841058.1|	-	0.0035	16.8	0.1	0.0078	15.6	0.1	1.5	1	0	0	1	1	1	1	AAA-like	domain
AAA	PF00004.24	gi|385804658|ref|YP_005841058.1|	-	0.004	17.3	0.0	0.085	13.0	0.0	2.4	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.1	gi|385804658|ref|YP_005841058.1|	-	0.0046	16.9	0.0	0.0064	16.5	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_25	PF13481.1	gi|385804658|ref|YP_005841058.1|	-	0.0075	15.6	0.0	0.016	14.6	0.0	1.6	2	0	0	2	2	1	1	AAA	domain
AAA_17	PF13207.1	gi|385804658|ref|YP_005841058.1|	-	0.0091	16.8	0.0	0.016	16.0	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|385804658|ref|YP_005841058.1|	-	0.01	15.7	0.0	0.016	15.0	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|385804658|ref|YP_005841058.1|	-	0.013	15.1	0.0	0.027	14.1	0.0	1.5	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
MutS_V	PF00488.16	gi|385804658|ref|YP_005841058.1|	-	0.019	14.3	0.0	0.034	13.5	0.0	1.3	1	0	0	1	1	1	0	MutS	domain	V
AAA_14	PF13173.1	gi|385804658|ref|YP_005841058.1|	-	0.025	14.4	0.0	0.052	13.4	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|385804658|ref|YP_005841058.1|	-	0.027	14.1	0.2	0.06	12.9	0.0	1.7	2	0	0	2	2	1	0	NACHT	domain
ATP-synt_ab	PF00006.20	gi|385804658|ref|YP_005841058.1|	-	0.029	13.8	0.0	0.035	13.6	0.0	1.1	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
MMR_HSR1	PF01926.18	gi|385804658|ref|YP_005841058.1|	-	0.046	13.6	0.0	0.065	13.1	0.0	1.5	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
RNA_helicase	PF00910.17	gi|385804658|ref|YP_005841058.1|	-	0.057	13.5	0.0	0.099	12.8	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
NB-ARC	PF00931.17	gi|385804658|ref|YP_005841058.1|	-	0.058	12.2	0.0	0.074	11.8	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_30	PF13604.1	gi|385804658|ref|YP_005841058.1|	-	0.07	12.7	0.0	0.11	12.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
MobB	PF03205.9	gi|385804658|ref|YP_005841058.1|	-	0.08	12.6	0.1	0.21	11.3	0.0	1.7	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_13	PF13166.1	gi|385804658|ref|YP_005841058.1|	-	0.11	10.9	0.0	0.14	10.5	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
ATP_bind_1	PF03029.12	gi|385804658|ref|YP_005841058.1|	-	0.11	12.0	0.1	0.17	11.3	0.1	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
SbcCD_C	PF13558.1	gi|385804658|ref|YP_005841058.1|	-	0.14	12.1	0.2	2.5	8.0	0.2	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
Rad17	PF03215.10	gi|385804658|ref|YP_005841058.1|	-	0.17	10.5	0.0	0.19	10.4	0.0	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
ADH_N	PF08240.7	gi|385804659|ref|YP_005841059.1|	-	7.4e-27	93.2	1.3	1.4e-26	92.3	0.7	1.6	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|385804659|ref|YP_005841059.1|	-	3.8e-11	42.6	0.1	7e-11	41.7	0.1	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N_assoc	PF13823.1	gi|385804659|ref|YP_005841059.1|	-	2.4e-08	33.4	0.5	6.2e-08	32.1	0.4	1.8	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-associated
Methyltransf_18	PF12847.2	gi|385804659|ref|YP_005841059.1|	-	0.0002	21.8	0.0	0.00065	20.2	0.0	1.9	1	0	0	1	1	1	1	Methyltransferase	domain
Shikimate_DH	PF01488.15	gi|385804659|ref|YP_005841059.1|	-	0.026	14.6	0.1	0.5	10.4	0.0	2.2	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
HI0933_like	PF03486.9	gi|385804659|ref|YP_005841059.1|	-	0.065	11.6	0.1	0.25	9.7	0.1	1.8	2	0	0	2	2	2	0	HI0933-like	protein
zf-DBF	PF07535.7	gi|385804659|ref|YP_005841059.1|	-	0.76	9.5	4.2	1.4	8.6	2.9	1.4	1	0	0	1	1	1	0	DBF	zinc	finger
cobW	PF02492.14	gi|385804661|ref|YP_005841061.1|	-	4.4e-49	166.3	0.0	5.9e-49	165.9	0.0	1.2	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
CobW_C	PF07683.9	gi|385804661|ref|YP_005841061.1|	-	7.3e-23	80.1	0.0	1.6e-22	79.0	0.0	1.6	1	0	0	1	1	1	1	Cobalamin	synthesis	protein	cobW	C-terminal	domain
T2SE	PF00437.15	gi|385804661|ref|YP_005841061.1|	-	0.00059	18.8	0.1	0.00094	18.1	0.1	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
GTP_EFTU	PF00009.22	gi|385804661|ref|YP_005841061.1|	-	0.00064	19.1	0.0	0.41	10.0	0.0	2.3	2	0	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
AAA_22	PF13401.1	gi|385804661|ref|YP_005841061.1|	-	0.0014	18.7	0.0	0.0027	17.8	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
MobB	PF03205.9	gi|385804661|ref|YP_005841061.1|	-	0.0026	17.4	0.0	0.046	13.4	0.0	2.3	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Arch_ATPase	PF01637.13	gi|385804661|ref|YP_005841061.1|	-	0.0063	16.2	0.0	0.01	15.5	0.0	1.2	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_10	PF12846.2	gi|385804661|ref|YP_005841061.1|	-	0.0069	15.8	0.0	0.012	15.0	0.0	1.4	1	0	0	1	1	1	1	AAA-like	domain
DUF258	PF03193.11	gi|385804661|ref|YP_005841061.1|	-	0.0081	15.3	0.0	0.013	14.7	0.0	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function,	DUF258
UPF0079	PF02367.12	gi|385804661|ref|YP_005841061.1|	-	0.0084	15.7	0.0	0.016	14.8	0.0	1.4	1	0	0	1	1	1	1	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_33	PF13671.1	gi|385804661|ref|YP_005841061.1|	-	0.01	15.6	0.0	0.017	14.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_19	PF13245.1	gi|385804661|ref|YP_005841061.1|	-	0.012	15.3	0.1	0.029	14.1	0.1	1.6	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_16	PF13191.1	gi|385804661|ref|YP_005841061.1|	-	0.012	15.5	0.0	0.036	14.0	0.0	1.7	1	0	0	1	1	1	0	AAA	ATPase	domain
MMR_HSR1	PF01926.18	gi|385804661|ref|YP_005841061.1|	-	0.017	15.0	0.0	0.068	13.1	0.0	2.0	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
TrwB_AAD_bind	PF10412.4	gi|385804661|ref|YP_005841061.1|	-	0.018	13.6	0.0	0.027	13.1	0.0	1.1	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
ABC_tran	PF00005.22	gi|385804661|ref|YP_005841061.1|	-	0.02	15.1	0.0	0.037	14.3	0.0	1.5	1	0	0	1	1	1	0	ABC	transporter
AAA_14	PF13173.1	gi|385804661|ref|YP_005841061.1|	-	0.025	14.4	0.0	0.051	13.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_17	PF13207.1	gi|385804661|ref|YP_005841061.1|	-	0.026	15.3	0.1	0.052	14.3	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.1	gi|385804661|ref|YP_005841061.1|	-	0.026	14.4	0.0	0.057	13.3	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.1	gi|385804661|ref|YP_005841061.1|	-	0.029	14.6	0.0	0.077	13.3	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.7	gi|385804661|ref|YP_005841061.1|	-	0.037	13.1	0.0	0.066	12.3	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
AAA_29	PF13555.1	gi|385804661|ref|YP_005841061.1|	-	0.051	13.1	0.0	0.12	11.8	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Guanylate_kin	PF00625.16	gi|385804661|ref|YP_005841061.1|	-	0.064	12.6	0.0	0.12	11.8	0.0	1.3	1	0	0	1	1	1	0	Guanylate	kinase
AAA_23	PF13476.1	gi|385804661|ref|YP_005841061.1|	-	0.076	13.3	0.0	0.14	12.4	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
ATP_bind_1	PF03029.12	gi|385804661|ref|YP_005841061.1|	-	0.11	11.9	0.0	0.56	9.7	0.0	1.9	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
NACHT	PF05729.7	gi|385804661|ref|YP_005841061.1|	-	0.13	11.8	0.0	0.69	9.5	0.0	2.0	2	0	0	2	2	2	0	NACHT	domain
NTPase_1	PF03266.10	gi|385804661|ref|YP_005841061.1|	-	0.18	11.5	0.0	0.28	10.8	0.0	1.3	1	0	0	1	1	1	0	NTPase
TFIIS_C	PF01096.13	gi|385804662|ref|YP_005841062.1|	-	1.9e-17	62.6	2.4	1.9e-17	62.6	1.7	3.0	3	0	0	3	3	3	1	Transcription	factor	S-II	(TFIIS)
RNA_POL_M_15KD	PF02150.11	gi|385804662|ref|YP_005841062.1|	-	8.2e-08	31.8	1.9	8.2e-08	31.8	1.3	3.2	3	0	0	3	3	3	1	RNA	polymerases	M/15	Kd	subunit
DZR	PF12773.2	gi|385804662|ref|YP_005841062.1|	-	3.9e-06	26.5	9.8	0.0001	22.0	0.7	2.5	2	1	0	2	2	2	2	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.6	gi|385804662|ref|YP_005841062.1|	-	0.00021	20.9	11.0	0.0046	16.5	1.0	2.9	2	1	1	3	3	3	2	Putative	transposase	DNA-binding	domain
zf-NADH-PPase	PF09297.6	gi|385804662|ref|YP_005841062.1|	-	0.01	15.3	0.7	0.01	15.3	0.5	3.0	3	0	0	3	3	3	0	NADH	pyrophosphatase	zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|385804662|ref|YP_005841062.1|	-	0.014	14.6	14.5	3.6	6.9	3.9	4.2	3	1	0	3	3	3	0	TFIIB	zinc-binding
PHF5	PF03660.9	gi|385804662|ref|YP_005841062.1|	-	0.021	14.8	1.8	0.46	10.5	0.2	2.2	2	0	0	2	2	2	0	PHF5-like	protein
Zn_Tnp_IS1595	PF12760.2	gi|385804662|ref|YP_005841062.1|	-	0.024	14.4	0.5	0.024	14.4	0.3	2.9	2	1	1	3	3	3	0	Transposase	zinc-ribbon	domain
Prok-RING_1	PF14446.1	gi|385804662|ref|YP_005841062.1|	-	0.042	13.5	2.4	0.042	13.5	1.6	3.0	3	0	0	3	3	3	0	Prokaryotic	RING	finger	family	1
Ribosomal_L44	PF00935.14	gi|385804662|ref|YP_005841062.1|	-	0.048	13.6	2.7	2.6	8.1	0.1	3.2	3	1	0	3	3	3	0	Ribosomal	protein	L44
HypA	PF01155.14	gi|385804662|ref|YP_005841062.1|	-	0.052	13.2	8.0	2.2	8.0	1.2	2.5	1	1	1	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
Auto_anti-p27	PF06677.7	gi|385804662|ref|YP_005841062.1|	-	0.053	13.2	3.5	0.053	13.2	2.4	2.7	3	0	0	3	3	3	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Nudix_N_2	PF14803.1	gi|385804662|ref|YP_005841062.1|	-	0.067	12.8	10.2	3.6	7.3	0.1	4.1	4	0	0	4	4	4	0	Nudix	N-terminal
RRN7	PF11781.3	gi|385804662|ref|YP_005841062.1|	-	0.07	12.6	11.5	8.3	6.0	0.4	4.1	3	1	0	3	3	3	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
zf-trcl	PF13451.1	gi|385804662|ref|YP_005841062.1|	-	0.1	12.2	10.1	1	9.0	0.1	4.0	4	0	0	4	4	4	0	Probable	zinc-binding	domain
PhnA_Zn_Ribbon	PF08274.7	gi|385804662|ref|YP_005841062.1|	-	0.11	12.3	0.1	0.11	12.3	0.1	3.9	4	0	0	4	4	4	0	PhnA	Zinc-Ribbon
Cytochrome_C554	PF13435.1	gi|385804662|ref|YP_005841062.1|	-	0.11	12.5	1.9	0.14	12.1	1.0	1.5	1	1	0	1	1	1	0	Cytochrome	c554	and	c-prime
eRF1_3	PF03465.10	gi|385804662|ref|YP_005841062.1|	-	0.15	12.3	0.5	0.86	9.8	0.1	1.9	2	0	0	2	2	2	0	eRF1	domain	3
zinc_ribbon_2	PF13240.1	gi|385804662|ref|YP_005841062.1|	-	0.22	11.0	15.5	1	8.9	2.0	4.1	3	1	0	3	3	3	0	zinc-ribbon	domain
zf-piccolo	PF05715.8	gi|385804662|ref|YP_005841062.1|	-	0.24	11.4	10.0	0.51	10.3	0.1	3.4	2	2	1	3	3	3	0	Piccolo	Zn-finger
zf-ribbon_3	PF13248.1	gi|385804662|ref|YP_005841062.1|	-	0.4	9.9	16.1	0.059	12.5	1.5	3.7	4	1	0	4	4	3	0	zinc-ribbon	domain
DUF2054	PF10218.4	gi|385804662|ref|YP_005841062.1|	-	0.4	10.5	2.8	3.7	7.3	0.1	2.0	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2054)
C1_1	PF00130.17	gi|385804662|ref|YP_005841062.1|	-	0.53	10.0	10.5	0.27	10.9	1.2	2.8	2	1	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
YhfH	PF14149.1	gi|385804662|ref|YP_005841062.1|	-	0.58	9.9	14.6	3.8	7.3	0.0	4.4	4	0	0	4	4	4	0	YhfH-like	protein
zinc_ribbon_4	PF13717.1	gi|385804662|ref|YP_005841062.1|	-	0.69	9.6	11.1	1.4	8.6	0.3	3.6	4	0	0	4	4	4	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|385804662|ref|YP_005841062.1|	-	0.7	9.5	10.8	1.4	8.5	0.2	3.6	4	0	0	4	4	4	0	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.8	gi|385804662|ref|YP_005841062.1|	-	1.2	8.6	12.1	7.5	6.1	0.1	3.7	3	1	0	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-C2HC5	PF06221.8	gi|385804662|ref|YP_005841062.1|	-	1.3	8.8	5.6	1.1	9.0	0.5	2.6	3	0	0	3	3	3	0	Putative	zinc	finger	motif,	C2HC5-type
zinc-ribbons_6	PF07191.7	gi|385804662|ref|YP_005841062.1|	-	1.5	8.6	7.3	0.65	9.8	0.3	2.7	2	1	0	2	2	2	0	zinc-ribbons
Mcm10	PF09332.6	gi|385804662|ref|YP_005841062.1|	-	1.9	7.7	7.5	1.1	8.5	3.7	1.9	1	1	0	1	1	1	0	Mcm10	replication	factor
Zn-ribbon_8	PF09723.5	gi|385804662|ref|YP_005841062.1|	-	2.4	8.2	15.9	11	6.0	0.4	4.0	2	2	0	3	3	3	0	Zinc	ribbon	domain
DUF3797	PF12677.2	gi|385804662|ref|YP_005841062.1|	-	3	7.5	9.3	9	6.0	0.0	3.5	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF3797)
DUF702	PF05142.7	gi|385804662|ref|YP_005841062.1|	-	3	7.9	6.6	39	4.3	0.4	3.1	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF702)
UPF0547	PF10571.4	gi|385804662|ref|YP_005841062.1|	-	4.1	7.2	14.1	7.1	6.4	0.2	3.9	4	0	0	4	4	4	0	Uncharacterised	protein	family	UPF0547
IBR	PF01485.16	gi|385804662|ref|YP_005841062.1|	-	4.6	7.1	12.2	6.6	6.6	1.3	3.2	2	1	0	2	2	2	0	IBR	domain
Lar_restr_allev	PF14354.1	gi|385804662|ref|YP_005841062.1|	-	6.3	7.1	13.5	4.3	7.7	1.4	3.2	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
GATA	PF00320.22	gi|385804662|ref|YP_005841062.1|	-	6.4	6.2	11.3	5.4	6.4	0.2	3.7	3	1	1	4	4	4	0	GATA	zinc	finger
A2L_zn_ribbon	PF08792.5	gi|385804662|ref|YP_005841062.1|	-	7.1	6.2	17.9	8.2	6.0	2.7	4.0	3	1	0	3	3	3	0	A2L	zinc	ribbon	domain
Lar_restr_allev	PF14354.1	gi|385804666|ref|YP_005841066.1|	-	0.017	15.4	0.1	0.043	14.1	0.1	1.7	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf-Di19	PF05605.7	gi|385804666|ref|YP_005841066.1|	-	0.07	13.2	0.8	0.12	12.5	0.6	1.3	1	0	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
DUF3797	PF12677.2	gi|385804666|ref|YP_005841066.1|	-	0.17	11.5	0.6	13	5.4	0.0	3.1	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF3797)
zf-dskA_traR	PF01258.12	gi|385804667|ref|YP_005841067.1|	-	0.014	15.1	0.6	0.29	10.8	0.2	2.2	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
RNA_POL_M_15KD	PF02150.11	gi|385804667|ref|YP_005841067.1|	-	0.022	14.4	0.2	0.95	9.2	0.0	2.0	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
Lar_restr_allev	PF14354.1	gi|385804667|ref|YP_005841067.1|	-	0.09	13.0	2.1	0.16	12.3	1.5	1.4	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
DZR	PF12773.2	gi|385804667|ref|YP_005841067.1|	-	0.097	12.5	1.0	0.33	10.8	0.7	1.8	1	1	0	1	1	1	0	Double	zinc	ribbon
FANCL_C	PF11793.3	gi|385804667|ref|YP_005841067.1|	-	0.099	12.6	0.2	1.6	8.7	0.0	2.0	2	0	0	2	2	2	0	FANCL	C-terminal	domain
UPF0547	PF10571.4	gi|385804667|ref|YP_005841067.1|	-	1.7	8.4	7.2	1.4	8.7	0.3	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DUF4027	PF13219.1	gi|385804668|ref|YP_005841068.1|	-	0.76	9.2	3.1	1.8	8.0	2.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4027)
DUF1469	PF07332.6	gi|385804668|ref|YP_005841068.1|	-	6.6	6.4	11.8	4.1	7.1	2.1	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1469)
FUSC	PF04632.7	gi|385804669|ref|YP_005841069.1|	-	0.0084	14.5	0.9	0.0084	14.5	0.6	1.0	1	0	0	1	1	1	1	Fusaric	acid	resistance	protein	family
Polysacc_synt_3	PF13440.1	gi|385804671|ref|YP_005841071.1|	-	0.01	15.3	2.2	0.012	15.0	1.6	1.1	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	protein
DUF3353	PF11833.3	gi|385804671|ref|YP_005841071.1|	-	0.037	13.4	2.5	0.042	13.2	1.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3353)
Phosphorylase	PF00343.15	gi|385804672|ref|YP_005841072.1|	-	0.0035	15.3	0.0	0.0049	14.8	0.0	1.1	1	0	0	1	1	1	1	Carbohydrate	phosphorylase
Vps55	PF04133.9	gi|385804675|ref|YP_005841075.1|	-	0.059	13.1	0.1	0.062	13.0	0.1	1.0	1	0	0	1	1	1	0	Vacuolar	protein	sorting	55
DUF2207	PF09972.4	gi|385804675|ref|YP_005841075.1|	-	0.068	11.7	0.4	0.067	11.7	0.2	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF3098	PF11297.3	gi|385804675|ref|YP_005841075.1|	-	0.078	12.6	0.4	0.33	10.7	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3098)
GHMP_kinases_N	PF00288.21	gi|385804678|ref|YP_005841078.1|	-	8.8e-07	28.8	0.2	1.8e-06	27.9	0.1	1.6	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|385804678|ref|YP_005841078.1|	-	0.0085	16.2	0.0	0.019	15.1	0.0	1.6	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
Keratin	PF02422.11	gi|385804678|ref|YP_005841078.1|	-	0.17	11.8	3.8	0.53	10.2	2.6	1.9	1	1	0	1	1	1	0	Keratin
Cupin_2	PF07883.6	gi|385804679|ref|YP_005841079.1|	-	1.3e-11	43.7	0.3	1.9e-11	43.2	0.2	1.2	1	0	0	1	1	1	1	Cupin	domain
MannoseP_isomer	PF01050.13	gi|385804679|ref|YP_005841079.1|	-	0.0024	17.4	0.0	0.0029	17.2	0.0	1.1	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
DUF1637	PF07847.7	gi|385804679|ref|YP_005841079.1|	-	0.025	13.9	0.0	0.034	13.5	0.0	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1637)
Cupin_3	PF05899.7	gi|385804679|ref|YP_005841079.1|	-	0.14	11.5	0.1	0.18	11.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF861)
TrkA_N	PF02254.13	gi|385804680|ref|YP_005841080.1|	-	3.9e-05	23.6	0.2	4.8e-05	23.3	0.2	1.2	1	0	0	1	1	1	1	TrkA-N	domain
GMP_synt_C	PF00958.17	gi|385804681|ref|YP_005841081.1|	-	1.2e-29	101.8	0.1	2.8e-29	100.6	0.0	1.6	2	0	0	2	2	2	1	GMP	synthase	C	terminal	domain
NAD_synthase	PF02540.12	gi|385804681|ref|YP_005841081.1|	-	5.6e-09	35.2	0.1	2.6e-08	33.0	0.0	1.9	1	1	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.11	gi|385804681|ref|YP_005841081.1|	-	1.5e-05	23.7	0.0	0.0006	18.4	0.0	2.1	2	0	0	2	2	2	1	tRNA	methyl	transferase
Asn_synthase	PF00733.16	gi|385804681|ref|YP_005841081.1|	-	0.0011	18.5	0.1	0.0043	16.5	0.0	1.8	2	1	0	2	2	2	1	Asparagine	synthase
PAPS_reduct	PF01507.14	gi|385804681|ref|YP_005841081.1|	-	0.0056	16.5	0.0	0.0092	15.8	0.0	1.4	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
QueC	PF06508.8	gi|385804681|ref|YP_005841081.1|	-	0.021	14.1	0.1	0.084	12.1	0.0	1.7	1	1	0	2	2	2	0	Queuosine	biosynthesis	protein	QueC
ThiI	PF02568.9	gi|385804681|ref|YP_005841081.1|	-	0.023	14.1	0.0	0.053	12.9	0.0	1.7	1	1	0	1	1	1	0	Thiamine	biosynthesis	protein	(ThiI)
CTP_synth_N	PF06418.9	gi|385804682|ref|YP_005841082.1|	-	1.9e-126	420.8	0.1	2.7e-126	420.2	0.1	1.2	1	0	0	1	1	1	1	CTP	synthase	N-terminus
GATase	PF00117.23	gi|385804682|ref|YP_005841082.1|	-	4.6e-47	159.9	0.0	8.3e-47	159.1	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|385804682|ref|YP_005841082.1|	-	1.9e-09	37.3	0.0	5.3e-09	35.8	0.0	1.8	1	1	0	1	1	1	1	Peptidase	C26
CbiA	PF01656.18	gi|385804682|ref|YP_005841082.1|	-	1.1e-07	31.4	0.0	2.8e-07	30.1	0.0	1.7	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Glyco_hydro_3_C	PF01915.17	gi|385804682|ref|YP_005841082.1|	-	0.12	11.8	0.1	2	7.8	0.0	2.1	2	0	0	2	2	2	0	Glycosyl	hydrolase	family	3	C-terminal	domain
DUF2892	PF11127.3	gi|385804683|ref|YP_005841083.1|	-	4.3e-10	39.2	1.5	4.8e-10	39.1	1.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2892)
PEPcase	PF00311.12	gi|385804684|ref|YP_005841084.1|	-	7.2e-242	804.6	0.0	9.6e-242	804.2	0.0	1.2	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxylase
PEPcase_2	PF14010.1	gi|385804684|ref|YP_005841084.1|	-	0.00053	18.4	0.0	0.00096	17.5	0.0	1.4	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxylase
AlkA_N	PF06029.6	gi|385804684|ref|YP_005841084.1|	-	0.00067	19.6	1.0	0.21	11.6	0.1	2.7	2	0	0	2	2	2	2	AlkA	N-terminal	domain
Rieske	PF00355.21	gi|385804685|ref|YP_005841085.1|	-	6.3e-08	32.0	0.1	1.1e-07	31.2	0.1	1.4	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
ThiS	PF02597.15	gi|385804686|ref|YP_005841086.1|	-	8e-16	58.2	0.0	1.2e-15	57.6	0.0	1.3	1	0	0	1	1	1	1	ThiS	family
STN	PF07660.9	gi|385804686|ref|YP_005841086.1|	-	0.044	13.3	0.0	0.074	12.6	0.0	1.4	1	0	0	1	1	1	0	Secretin	and	TonB	N	terminus	short	domain
Ub-Mut7C	PF14451.1	gi|385804686|ref|YP_005841086.1|	-	0.14	11.7	0.1	0.92	9.0	0.0	2.1	2	1	0	2	2	2	0	Mut7-C	ubiquitin
PNP_UDP_1	PF01048.15	gi|385804688|ref|YP_005841088.1|	-	1.1e-45	155.4	6.0	1.2e-45	155.3	4.2	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
GFO_IDH_MocA	PF01408.17	gi|385804689|ref|YP_005841089.1|	-	3.6e-13	50.0	0.2	1.1e-12	48.5	0.2	1.8	1	1	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.12	gi|385804689|ref|YP_005841089.1|	-	2e-08	34.0	0.0	4.4e-08	32.9	0.0	1.6	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
Sulfatase	PF00884.18	gi|385804690|ref|YP_005841090.1|	-	2.2e-36	125.6	0.3	3.1e-36	125.1	0.2	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.17	gi|385804690|ref|YP_005841090.1|	-	6.4e-13	48.7	1.2	1.5e-11	44.2	0.9	2.3	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.12	gi|385804690|ref|YP_005841090.1|	-	1.1e-05	24.1	0.0	2.6e-05	22.8	0.0	1.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF229)
DUF1501	PF07394.7	gi|385804690|ref|YP_005841090.1|	-	0.025	13.4	0.0	0.041	12.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1501)
HTH_1	PF00126.22	gi|385804690|ref|YP_005841090.1|	-	0.063	13.0	0.5	0.19	11.5	0.0	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
DUF63	PF01889.12	gi|385804691|ref|YP_005841091.1|	-	8.4e-17	62.1	12.6	1.1e-16	61.7	8.7	1.1	1	0	0	1	1	1	1	Membrane	protein	of	unknown	function	DUF63
DeoC	PF01791.4	gi|385804692|ref|YP_005841092.1|	-	9.1e-35	120.0	3.1	1e-34	119.8	2.2	1.0	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
His_biosynth	PF00977.16	gi|385804692|ref|YP_005841092.1|	-	0.0076	15.5	0.2	0.028	13.6	0.0	1.9	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
PcrB	PF01884.12	gi|385804692|ref|YP_005841092.1|	-	0.18	11.0	1.9	1.5	7.9	0.1	2.3	1	1	0	2	2	2	0	PcrB	family
Cation_efflux	PF01545.16	gi|385804693|ref|YP_005841093.1|	-	1.7e-56	191.3	1.8	2e-56	191.2	1.3	1.0	1	0	0	1	1	1	1	Cation	efflux	family
HIT	PF01230.18	gi|385804694|ref|YP_005841094.1|	-	3.3e-10	40.3	0.0	7.6e-10	39.2	0.0	1.6	2	0	0	2	2	2	1	HIT	domain
CwfJ_C_1	PF04677.10	gi|385804694|ref|YP_005841094.1|	-	0.00089	18.9	0.0	0.0014	18.2	0.0	1.4	1	0	0	1	1	1	1	Protein	similar	to	CwfJ	C-terminus	1
DcpS_C	PF11969.3	gi|385804694|ref|YP_005841094.1|	-	0.0046	17.1	0.0	0.013	15.7	0.0	1.7	2	0	0	2	2	2	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
Peptidase_M24	PF00557.19	gi|385804695|ref|YP_005841095.1|	-	7.4e-46	156.3	0.8	9.4e-46	155.9	0.6	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Metallophos	PF00149.23	gi|385804696|ref|YP_005841096.1|	-	1.2e-13	50.9	0.7	4.1e-13	49.1	0.5	1.8	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.2	gi|385804696|ref|YP_005841096.1|	-	9.4e-10	38.5	0.0	1.3e-09	38.0	0.0	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos_3	PF14582.1	gi|385804696|ref|YP_005841096.1|	-	0.003	16.7	0.0	0.0043	16.2	0.0	1.2	1	0	0	1	1	1	1	Metallophosphoesterase,	calcineurin	superfamily
Gag_spuma	PF03276.9	gi|385804697|ref|YP_005841097.1|	-	0.00069	18.0	0.3	0.00069	18.0	0.2	1.1	1	0	0	1	1	1	1	Spumavirus	gag	protein
Shisa	PF13908.1	gi|385804697|ref|YP_005841097.1|	-	0.0011	19.1	0.4	0.0011	19.1	0.3	1.3	2	0	0	2	2	2	1	Wnt	and	FGF	inhibitory	regulator
Mem_trans	PF03547.13	gi|385804697|ref|YP_005841097.1|	-	0.033	12.5	1.0	0.052	11.8	0.7	1.4	1	1	0	1	1	1	0	Membrane	transport	protein
Zip	PF02535.17	gi|385804697|ref|YP_005841097.1|	-	0.05	12.6	0.1	0.099	11.6	0.0	1.6	1	1	0	1	1	1	0	ZIP	Zinc	transporter
Peroxin-13_N	PF04088.8	gi|385804697|ref|YP_005841097.1|	-	0.068	13.1	0.0	0.11	12.5	0.0	1.3	1	0	0	1	1	1	0	Peroxin	13,	N-terminal	region
DUF3592	PF12158.3	gi|385804697|ref|YP_005841097.1|	-	0.17	11.6	0.1	0.17	11.6	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3592)
CD20	PF04103.10	gi|385804697|ref|YP_005841097.1|	-	0.17	11.8	6.9	0.28	11.0	4.8	1.5	1	1	0	1	1	1	0	CD20-like	family
OAD_gamma	PF04277.8	gi|385804697|ref|YP_005841097.1|	-	1.5	9.2	3.6	1.1	9.6	0.6	2.2	2	1	0	2	2	2	0	Oxaloacetate	decarboxylase,	gamma	chain
DSBA	PF01323.15	gi|385804698|ref|YP_005841098.1|	-	1.8e-25	89.6	0.1	2.6e-25	89.1	0.1	1.3	1	0	0	1	1	1	1	DSBA-like	thioredoxin	domain
Thioredoxin_2	PF13098.1	gi|385804698|ref|YP_005841098.1|	-	3.3e-07	30.4	0.3	1.9e-05	24.8	0.2	2.2	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_4	PF13462.1	gi|385804698|ref|YP_005841098.1|	-	0.00013	22.0	2.3	0.0097	15.9	1.6	2.1	1	1	0	1	1	1	1	Thioredoxin
Thioredoxin_5	PF13743.1	gi|385804698|ref|YP_005841098.1|	-	0.031	13.8	0.5	0.78	9.2	0.0	2.3	2	1	0	2	2	2	0	Thioredoxin
Suppressor_APC	PF11414.3	gi|385804698|ref|YP_005841098.1|	-	0.14	11.9	1.4	0.32	10.8	1.0	1.5	1	0	0	1	1	1	0	Adenomatous	polyposis	coli	tumour	suppressor	protein
Iso_dh	PF00180.15	gi|385804699|ref|YP_005841099.1|	-	1.2e-106	356.6	0.0	5.5e-106	354.4	0.0	1.8	1	1	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
DUF2314	PF10077.4	gi|385804699|ref|YP_005841099.1|	-	0.079	13.0	0.0	0.16	12.0	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2314)
DUF2088	PF09861.4	gi|385804700|ref|YP_005841100.1|	-	2.1e-08	33.4	0.2	3.6e-08	32.6	0.1	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2088)
Zn-ribbon_8	PF09723.5	gi|385804701|ref|YP_005841101.1|	-	0.036	14.0	0.9	0.071	13.0	0.6	1.5	1	0	0	1	1	1	0	Zinc	ribbon	domain
zf-Di19	PF05605.7	gi|385804701|ref|YP_005841101.1|	-	0.037	14.1	0.0	0.064	13.3	0.0	1.4	1	0	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
OrfB_Zn_ribbon	PF07282.6	gi|385804701|ref|YP_005841101.1|	-	0.092	12.4	0.1	0.28	10.8	0.1	1.9	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
DUF2072	PF09845.4	gi|385804701|ref|YP_005841101.1|	-	0.13	12.1	0.2	0.21	11.4	0.1	1.5	1	1	0	1	1	1	0	Zn-ribbon	containing	protein	(DUF2072)
HypA	PF01155.14	gi|385804701|ref|YP_005841101.1|	-	0.14	11.8	0.5	0.22	11.2	0.3	1.3	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
FYDLN_acid	PF09538.5	gi|385804701|ref|YP_005841101.1|	-	0.37	11.3	3.6	0.75	10.3	2.5	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(FYDLN_acid)
zf-RING_3	PF14369.1	gi|385804701|ref|YP_005841101.1|	-	6.1	6.9	7.4	0.32	11.0	1.3	1.7	2	0	0	2	2	2	0	zinc-finger
HMG-CoA_red	PF00368.13	gi|385804702|ref|YP_005841102.1|	-	6.7e-137	456.1	8.9	7.8e-137	455.8	6.2	1.0	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	reductase
DUF1522	PF07482.6	gi|385804702|ref|YP_005841102.1|	-	5.7	7.1	11.8	2.9	8.0	1.6	3.3	2	2	1	3	3	3	0	Domain	of	Unknown	Function	(DUF1522)
NadA	PF02445.11	gi|385804703|ref|YP_005841103.1|	-	1e-100	336.4	0.0	1.2e-100	336.2	0.0	1.0	1	0	0	1	1	1	1	Quinolinate	synthetase	A	protein
FAD_binding_2	PF00890.19	gi|385804704|ref|YP_005841104.1|	-	2.8e-76	257.0	5.0	3.6e-76	256.6	3.4	1.1	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|385804704|ref|YP_005841104.1|	-	1.3e-10	41.4	1.7	3.3e-09	36.8	1.2	2.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|385804704|ref|YP_005841104.1|	-	1.2e-09	37.5	0.4	1.2e-09	37.5	0.3	2.3	2	1	1	3	3	3	1	FAD	dependent	oxidoreductase
GIDA	PF01134.17	gi|385804704|ref|YP_005841104.1|	-	4.3e-08	32.4	0.9	2.3e-06	26.7	0.6	2.3	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.2	gi|385804704|ref|YP_005841104.1|	-	7.6e-07	28.5	7.4	1.2e-06	27.8	4.5	1.8	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|385804704|ref|YP_005841104.1|	-	1.2e-06	27.3	0.3	0.0012	17.3	0.1	2.3	2	0	0	2	2	2	2	HI0933-like	protein
NAD_binding_8	PF13450.1	gi|385804704|ref|YP_005841104.1|	-	0.00011	22.1	0.2	0.00035	20.5	0.1	1.9	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.14	gi|385804704|ref|YP_005841104.1|	-	0.00018	20.6	0.0	0.00026	20.1	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Succ_DH_flav_C	PF02910.15	gi|385804704|ref|YP_005841104.1|	-	0.00041	20.1	0.1	0.00072	19.4	0.1	1.4	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
Pyr_redox	PF00070.22	gi|385804704|ref|YP_005841104.1|	-	0.00043	20.6	0.1	0.0021	18.4	0.0	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.16	gi|385804704|ref|YP_005841104.1|	-	0.00083	18.9	0.1	0.0015	18.1	0.1	1.4	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_7	PF13241.1	gi|385804704|ref|YP_005841104.1|	-	0.0025	18.0	0.1	0.005	17.0	0.0	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
Lycopene_cycl	PF05834.7	gi|385804704|ref|YP_005841104.1|	-	0.046	12.6	0.6	0.075	11.9	0.4	1.3	1	0	0	1	1	1	0	Lycopene	cyclase	protein
3HCDH_N	PF02737.13	gi|385804704|ref|YP_005841104.1|	-	0.065	12.8	0.2	0.12	11.9	0.1	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.11	gi|385804704|ref|YP_005841104.1|	-	0.087	12.2	0.0	0.17	11.2	0.0	1.5	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Thi4	PF01946.12	gi|385804704|ref|YP_005841104.1|	-	0.46	9.5	3.2	0.75	8.8	0.5	2.4	2	1	1	3	3	3	0	Thi4	family
QRPTase_C	PF01729.14	gi|385804705|ref|YP_005841105.1|	-	8.5e-53	178.3	1.4	1.1e-52	177.9	0.9	1.2	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.11	gi|385804705|ref|YP_005841105.1|	-	6e-18	64.4	0.1	2e-17	62.7	0.0	1.9	2	0	0	2	2	2	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
Ribul_P_3_epim	PF00834.14	gi|385804705|ref|YP_005841105.1|	-	0.037	13.1	0.4	0.11	11.6	0.1	1.8	1	1	1	2	2	2	0	Ribulose-phosphate	3	epimerase	family
OMPdecase	PF00215.19	gi|385804706|ref|YP_005841106.1|	-	4.4e-33	114.5	0.0	5.3e-33	114.2	0.0	1.1	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
DUF2859	PF11072.3	gi|385804706|ref|YP_005841106.1|	-	0.069	12.6	0.0	0.16	11.3	0.0	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2859)
zf-C2HC5	PF06221.8	gi|385804707|ref|YP_005841107.1|	-	0.013	15.2	1.8	0.019	14.7	1.2	1.2	1	0	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
DUF2180	PF09947.4	gi|385804707|ref|YP_005841107.1|	-	0.076	12.7	7.6	0.94	9.2	5.3	2.1	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2180)
DUF1889	PF08986.5	gi|385804707|ref|YP_005841107.1|	-	0.12	12.6	0.0	0.12	12.6	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1889)
zf-AN1	PF01428.11	gi|385804707|ref|YP_005841107.1|	-	0.18	11.7	4.4	0.33	10.8	3.0	1.6	1	1	0	1	1	1	0	AN1-like	Zinc	finger
DZR	PF12773.2	gi|385804707|ref|YP_005841107.1|	-	0.25	11.1	4.3	0.39	10.5	3.0	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
FYVE	PF01363.16	gi|385804707|ref|YP_005841107.1|	-	1.4	8.9	7.3	9.3	6.2	5.2	1.9	1	1	0	1	1	1	0	FYVE	zinc	finger
zf-TFIIB	PF13453.1	gi|385804707|ref|YP_005841107.1|	-	3.9	6.7	6.0	0.53	9.5	1.4	1.6	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
Glutaredoxin	PF00462.19	gi|385804708|ref|YP_005841108.1|	-	4.9e-14	52.0	0.0	6.2e-14	51.7	0.0	1.1	1	0	0	1	1	1	1	Glutaredoxin
GST_N_3	PF13417.1	gi|385804708|ref|YP_005841108.1|	-	4.5e-12	46.0	0.0	4.8e-12	45.9	0.0	1.0	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_N_2	PF13409.1	gi|385804708|ref|YP_005841108.1|	-	1.9e-08	34.1	0.0	2.1e-08	34.0	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_N	PF02798.15	gi|385804708|ref|YP_005841108.1|	-	0.00071	19.7	0.0	0.00085	19.4	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
DUF836	PF05768.9	gi|385804708|ref|YP_005841108.1|	-	0.0017	18.6	0.0	0.0018	18.4	0.0	1.3	1	1	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
Thioredoxin_3	PF13192.1	gi|385804708|ref|YP_005841108.1|	-	0.12	12.1	0.0	0.17	11.7	0.0	1.3	1	1	0	1	1	1	0	Thioredoxin	domain
Thioredoxin_2	PF13098.1	gi|385804708|ref|YP_005841108.1|	-	0.13	12.4	0.0	0.18	12.0	0.0	1.5	1	1	0	1	1	1	0	Thioredoxin-like	domain
PLDc_2	PF13091.1	gi|385804709|ref|YP_005841109.1|	-	1.7e-06	27.8	0.0	3.3e-06	26.8	0.0	1.4	1	0	0	1	1	1	1	PLD-like	domain
Tyr-DNA_phospho	PF06087.7	gi|385804709|ref|YP_005841109.1|	-	0.0012	17.5	0.0	0.0019	16.9	0.0	1.1	1	0	0	1	1	1	1	Tyrosyl-DNA	phosphodiesterase
RE_NgoFVII	PF09565.5	gi|385804709|ref|YP_005841109.1|	-	0.0034	16.3	0.7	0.0065	15.4	0.0	1.7	2	0	0	2	2	2	1	NgoFVII	restriction	endonuclease
DUF457	PF04307.9	gi|385804710|ref|YP_005841110.1|	-	1.3e-09	37.6	7.8	1.6e-09	37.3	5.4	1.1	1	0	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
Arylsulfotrans	PF05935.6	gi|385804711|ref|YP_005841111.1|	-	9.3e-13	47.4	4.4	3.3e-12	45.6	1.4	2.1	1	1	0	2	2	2	1	Arylsulfotransferase	(ASST)
Arylsulfotran_2	PF14269.1	gi|385804711|ref|YP_005841111.1|	-	6.2e-07	28.8	0.3	8.8e-05	21.7	0.3	3.2	3	1	0	3	3	3	1	Arylsulfotransferase	(ASST)
NHL	PF01436.16	gi|385804711|ref|YP_005841111.1|	-	8.9	6.4	7.1	8	6.6	0.0	4.1	5	0	0	5	5	5	0	NHL	repeat
Xan_ur_permease	PF00860.15	gi|385804712|ref|YP_005841112.1|	-	1.7e-30	105.8	43.3	2.4e-30	105.2	30.0	1.2	1	0	0	1	1	1	1	Permease	family
Pribosyltran	PF00156.22	gi|385804713|ref|YP_005841113.1|	-	2.5e-11	43.3	0.1	4.1e-11	42.6	0.1	1.4	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
HTH_3	PF01381.17	gi|385804713|ref|YP_005841113.1|	-	0.043	13.6	0.0	0.1	12.4	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix
DUF2017	PF09438.5	gi|385804713|ref|YP_005841113.1|	-	0.059	12.9	0.1	0.11	12.1	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2017)
Pribosyltran	PF00156.22	gi|385804714|ref|YP_005841114.1|	-	8.8e-11	41.6	3.5	3.4e-10	39.7	2.4	2.0	1	1	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.1	gi|385804714|ref|YP_005841114.1|	-	1.4e-05	24.4	0.4	2.1e-05	23.8	0.3	1.3	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.1	gi|385804714|ref|YP_005841114.1|	-	0.016	14.5	0.7	0.03	13.6	0.5	1.4	1	0	0	1	1	1	0	Phosphoribosyl	transferase
DUF46	PF01864.12	gi|385804715|ref|YP_005841115.1|	-	1.3e-44	152.1	3.6	1.7e-44	151.7	2.5	1.0	1	0	0	1	1	1	1	Putative	integral	membrane	protein	DUF46
CTP_transf_1	PF01148.15	gi|385804715|ref|YP_005841115.1|	-	3.9e-05	23.4	1.1	3.9e-05	23.4	0.7	2.0	2	0	0	2	2	2	1	Cytidylyltransferase	family
DUF502	PF04367.8	gi|385804716|ref|YP_005841116.1|	-	2.8e-20	72.0	0.4	5.8e-20	71.0	0.2	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF502)
Colicin_V	PF02674.11	gi|385804716|ref|YP_005841116.1|	-	0.0025	17.6	3.0	0.0036	17.1	2.1	1.2	1	0	0	1	1	1	1	Colicin	V	production	protein
Aminotran_4	PF01063.14	gi|385804717|ref|YP_005841117.1|	-	3.8e-47	160.7	0.0	4.4e-47	160.4	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	IV
RNA_pol_Rpb5_N	PF03871.9	gi|385804717|ref|YP_005841117.1|	-	0.027	14.8	0.1	0.049	14.0	0.1	1.4	1	0	0	1	1	1	0	RNA	polymerase	Rpb5,	N-terminal	domain
DHBP_synthase	PF00926.14	gi|385804718|ref|YP_005841118.1|	-	2.3e-55	186.8	0.3	2.6e-55	186.6	0.2	1.0	1	0	0	1	1	1	1	3,4-dihydroxy-2-butanone	4-phosphate	synthase
CTP-dep_RFKase	PF01982.11	gi|385804719|ref|YP_005841119.1|	-	4.7e-45	152.1	0.0	6.8e-45	151.6	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF120
HTH_24	PF13412.1	gi|385804719|ref|YP_005841119.1|	-	1.6e-06	27.3	0.0	2.8e-06	26.5	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|385804719|ref|YP_005841119.1|	-	4.2e-06	26.3	0.1	8e-06	25.4	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_34	PF13601.1	gi|385804719|ref|YP_005841119.1|	-	5.3e-06	26.3	0.0	0.00012	21.9	0.0	2.2	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.2	gi|385804719|ref|YP_005841119.1|	-	6.6e-06	25.8	0.1	1.5e-05	24.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|385804719|ref|YP_005841119.1|	-	1.7e-05	25.0	0.1	3.4e-05	24.0	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR	PF01047.17	gi|385804719|ref|YP_005841119.1|	-	8.8e-05	22.1	0.0	0.00018	21.1	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.7	gi|385804719|ref|YP_005841119.1|	-	0.00021	20.8	0.0	0.00042	19.9	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_AsnC-type	PF13404.1	gi|385804719|ref|YP_005841119.1|	-	0.00039	19.8	0.3	0.00078	18.9	0.2	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|385804719|ref|YP_005841119.1|	-	0.0017	18.2	0.0	0.0031	17.4	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_IclR	PF09339.5	gi|385804719|ref|YP_005841119.1|	-	0.0044	16.5	0.1	0.0082	15.7	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|385804719|ref|YP_005841119.1|	-	0.021	14.3	0.0	0.039	13.5	0.0	1.4	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_1	PF00126.22	gi|385804719|ref|YP_005841119.1|	-	0.076	12.7	0.0	0.36	10.6	0.0	2.1	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
tRNA-synt_1d	PF00750.14	gi|385804721|ref|YP_005841121.1|	-	5.7e-59	199.7	0.2	3.1e-58	197.3	0.0	1.9	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(R)
DALR_1	PF05746.10	gi|385804721|ref|YP_005841121.1|	-	1.3e-30	105.8	0.2	1.2e-29	102.7	0.0	2.3	2	0	0	2	2	2	1	DALR	anticodon	binding	domain
Arg_tRNA_synt_N	PF03485.11	gi|385804721|ref|YP_005841121.1|	-	1.2e-09	38.5	0.0	3.9e-09	36.9	0.0	1.9	2	0	0	2	2	2	1	Arginyl	tRNA	synthetase	N	terminal	domain
tRNA-synt_1f	PF01921.13	gi|385804721|ref|YP_005841121.1|	-	0.0082	14.8	0.0	0.15	10.6	0.0	2.3	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
FixP_N	PF14715.1	gi|529167410|ref|YP_008378658.1|	-	0.0096	15.2	0.1	0.0098	15.2	0.1	1.2	1	0	0	1	1	1	1	N-terminal	domain	of	cytochrome	oxidase-cbb3,	FixP
OPT	PF03169.10	gi|529167410|ref|YP_008378658.1|	-	0.053	11.9	0.1	0.053	11.9	0.1	1.0	1	0	0	1	1	1	0	OPT	oligopeptide	transporter	protein
eRF1_2	PF03464.10	gi|385804722|ref|YP_005841122.1|	-	6.2e-37	126.8	0.0	1.5e-36	125.6	0.0	1.7	1	0	0	1	1	1	1	eRF1	domain	2
eRF1_3	PF03465.10	gi|385804722|ref|YP_005841122.1|	-	1.5e-27	96.1	0.1	4e-27	94.7	0.0	1.8	1	0	0	1	1	1	1	eRF1	domain	3
eRF1_1	PF03463.10	gi|385804722|ref|YP_005841122.1|	-	2.7e-25	88.4	0.0	4.4e-25	87.7	0.0	1.3	1	0	0	1	1	1	1	eRF1	domain	1
Zn-ribbon_8	PF09723.5	gi|385804722|ref|YP_005841122.1|	-	0.00014	21.7	1.9	0.00035	20.4	1.3	1.7	1	0	0	1	1	1	1	Zinc	ribbon	domain
ATP-synt_D	PF01813.12	gi|385804723|ref|YP_005841123.1|	-	1e-60	204.6	10.9	1.2e-60	204.4	7.5	1.1	1	0	0	1	1	1	1	ATP	synthase	subunit	D
DUF948	PF06103.6	gi|385804723|ref|YP_005841123.1|	-	0.14	12.0	1.4	3.7	7.4	0.1	2.4	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
RNA_pol_3_Rpc31	PF11705.3	gi|385804723|ref|YP_005841123.1|	-	0.91	9.4	14.2	1.7	8.5	9.8	1.4	1	0	0	1	1	1	0	DNA-directed	RNA	polymerase	III	subunit	Rpc31
Ribosomal_S13	PF00416.17	gi|385804723|ref|YP_005841123.1|	-	1	9.8	4.8	1.2	9.5	0.8	2.4	2	0	0	2	2	2	0	Ribosomal	protein	S13/S18
DUF4611	PF15387.1	gi|385804723|ref|YP_005841123.1|	-	1.8	8.7	9.7	4.6	7.4	6.7	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4611)
ATP-synt_ab	PF00006.20	gi|385804724|ref|YP_005841124.1|	-	1.1e-58	198.2	0.0	1.5e-58	197.8	0.0	1.1	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_C	PF00306.22	gi|385804724|ref|YP_005841124.1|	-	7.5e-18	65.0	0.1	1.5e-17	64.0	0.1	1.5	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	chain,	C	terminal	domain
ATP-synt_ab_N	PF02874.18	gi|385804724|ref|YP_005841124.1|	-	1.8e-12	47.3	0.6	3.9e-12	46.2	0.4	1.6	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
HAS-barrel	PF09378.5	gi|385804724|ref|YP_005841124.1|	-	0.00059	19.6	0.9	0.002	17.9	0.7	2.0	1	0	0	1	1	1	1	HAS	barrel	domain
ATP-synt_ab	PF00006.20	gi|385804725|ref|YP_005841125.1|	-	1.8e-93	311.9	0.0	2.8e-93	311.3	0.0	1.3	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_C	PF00306.22	gi|385804725|ref|YP_005841125.1|	-	9e-19	68.0	0.5	2e-18	66.9	0.3	1.5	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	chain,	C	terminal	domain
ATP-synt_ab_N	PF02874.18	gi|385804725|ref|YP_005841125.1|	-	3.6e-12	46.3	3.4	3.6e-12	46.3	2.3	2.1	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
DUF1932	PF09130.6	gi|385804725|ref|YP_005841125.1|	-	0.18	11.5	1.7	1.7	8.4	0.4	2.8	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1932)
ATP-synt_F	PF01990.12	gi|385804726|ref|YP_005841126.1|	-	1.3e-18	67.1	0.1	1.6e-18	66.8	0.0	1.1	1	0	0	1	1	1	1	ATP	synthase	(F/14-kDa)	subunit
vATP-synt_AC39	PF01992.11	gi|385804727|ref|YP_005841127.1|	-	7.9e-95	317.8	6.2	8.8e-95	317.6	4.3	1.0	1	0	0	1	1	1	1	ATP	synthase	(C/AC39)	subunit
DUF2981	PF11200.3	gi|385804727|ref|YP_005841127.1|	-	0.1	11.6	0.0	0.28	10.2	0.0	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2981)
vATP-synt_E	PF01991.13	gi|385804728|ref|YP_005841128.1|	-	1.8e-42	144.8	13.0	2.4e-42	144.4	9.0	1.1	1	0	0	1	1	1	1	ATP	synthase	(E/31	kDa)	subunit
HrpE	PF06188.7	gi|385804728|ref|YP_005841128.1|	-	0.00021	21.1	8.6	0.00032	20.5	6.0	1.2	1	0	0	1	1	1	1	HrpE/YscL/FliH	and	V-type	ATPase	subunit	E
ATP-synt_B	PF00430.13	gi|385804728|ref|YP_005841128.1|	-	0.0031	17.3	20.8	0.013	15.3	14.5	1.9	1	1	0	1	1	1	1	ATP	synthase	B/B'	CF(0)
Fmp27_WPPW	PF10359.4	gi|385804728|ref|YP_005841128.1|	-	0.0071	14.8	4.6	0.0079	14.6	3.2	1.2	1	0	0	1	1	1	1	RNA	pol	II	promoter	Fmp27	protein	domain
DUF3552	PF12072.3	gi|385804728|ref|YP_005841128.1|	-	0.084	12.0	23.7	0.18	11.0	16.2	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
AAA_13	PF13166.1	gi|385804728|ref|YP_005841128.1|	-	0.16	10.4	9.9	0.19	10.1	6.9	1.1	1	0	0	1	1	1	0	AAA	domain
DUF2317	PF10079.4	gi|385804728|ref|YP_005841128.1|	-	0.19	10.3	6.8	0.27	9.8	4.7	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2317)
HlyD	PF00529.15	gi|385804728|ref|YP_005841128.1|	-	0.75	9.0	12.3	1	8.5	8.5	1.2	1	0	0	1	1	1	0	HlyD	family	secretion	protein
DivIVA	PF05103.8	gi|385804728|ref|YP_005841128.1|	-	0.79	9.7	17.0	15	5.6	11.5	2.4	1	1	1	2	2	2	0	DivIVA	protein
Peptidase_M41	PF01434.13	gi|385804728|ref|YP_005841128.1|	-	0.94	8.9	5.8	0.77	9.1	2.4	1.9	1	1	1	2	2	2	0	Peptidase	family	M41
HXXSHH	PF07586.6	gi|385804728|ref|YP_005841128.1|	-	0.97	8.2	3.7	0.71	8.7	1.1	1.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1552)
Rgp1	PF08737.5	gi|385804728|ref|YP_005841128.1|	-	1.5	7.8	3.9	1.9	7.4	2.7	1.1	1	0	0	1	1	1	0	Rgp1
zf-C4H2	PF10146.4	gi|385804728|ref|YP_005841128.1|	-	2.2	8.2	11.7	2.7	7.9	8.1	1.1	1	0	0	1	1	1	0	Zinc	finger-containing	protein
Aldedh	PF00171.17	gi|385804728|ref|YP_005841128.1|	-	3.4	5.9	5.3	4	5.6	3.4	1.4	1	1	0	1	1	1	0	Aldehyde	dehydrogenase	family
FUSC	PF04632.7	gi|385804728|ref|YP_005841128.1|	-	6.2	5.1	6.1	6.9	4.9	4.2	1.2	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
Terminase_2	PF03592.11	gi|385804728|ref|YP_005841128.1|	-	7.6	6.8	13.9	8.4	6.6	7.8	2.1	1	1	1	2	2	2	0	Terminase	small	subunit
ATP-synt_C	PF00137.16	gi|385804729|ref|YP_005841129.1|	-	1.3e-13	50.5	12.5	1.6e-13	50.3	8.7	1.1	1	0	0	1	1	1	1	ATP	synthase	subunit	C
V_ATPase_I	PF01496.14	gi|385804730|ref|YP_005841130.1|	-	4.8e-64	216.5	39.3	9e-32	109.8	13.7	5.4	3	2	0	3	3	3	3	V-type	ATPase	116kDa	subunit	family
BBS2_C	PF14782.1	gi|385804730|ref|YP_005841130.1|	-	0.0013	17.3	0.8	0.04	12.4	0.1	2.1	2	0	0	2	2	2	1	Ciliary	BBSome	complex	subunit	2,	C-terminal
ATP-synt_D	PF01813.12	gi|385804730|ref|YP_005841130.1|	-	0.0066	16.0	2.1	0.69	9.4	0.5	2.3	2	0	0	2	2	2	1	ATP	synthase	subunit	D
YlqD	PF11068.3	gi|385804730|ref|YP_005841130.1|	-	0.038	14.0	1.5	2.1	8.3	0.0	2.4	2	0	0	2	2	2	0	YlqD	protein
DUF4140	PF13600.1	gi|385804730|ref|YP_005841130.1|	-	0.048	14.1	6.3	1.8	9.0	0.5	2.4	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
Prefoldin_2	PF01920.15	gi|385804730|ref|YP_005841130.1|	-	0.2	11.4	8.9	2.5	7.9	0.7	2.8	3	0	0	3	3	3	0	Prefoldin	subunit
CENP-F_leu_zip	PF10473.4	gi|385804730|ref|YP_005841130.1|	-	0.21	11.4	8.2	0.76	9.6	0.4	2.3	2	0	0	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF4071	PF13281.1	gi|385804730|ref|YP_005841130.1|	-	0.31	9.8	2.7	8.8	5.0	0.1	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4071)
Med4	PF10018.4	gi|385804730|ref|YP_005841130.1|	-	0.4	10.0	5.5	2	7.7	0.5	2.2	2	0	0	2	2	2	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
DUF4600	PF15372.1	gi|385804730|ref|YP_005841130.1|	-	0.4	10.8	4.9	1	9.5	0.4	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4600)
GrpE	PF01025.14	gi|385804730|ref|YP_005841130.1|	-	0.6	9.6	5.2	8.1	5.9	1.2	2.3	2	0	0	2	2	2	0	GrpE
DASH_Dad3	PF08656.5	gi|385804730|ref|YP_005841130.1|	-	0.63	9.7	3.8	0.18	11.5	0.2	1.8	2	0	0	2	2	2	0	DASH	complex	subunit	Dad3
OmpH	PF03938.9	gi|385804730|ref|YP_005841130.1|	-	0.91	9.4	4.5	1.7	8.5	1.3	2.0	2	0	0	2	2	2	0	Outer	membrane	protein	(OmpH-like)
TBPIP	PF07106.8	gi|385804730|ref|YP_005841130.1|	-	1.4	8.4	5.4	5.6	6.4	0.3	2.2	2	0	0	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
ALIX_LYPXL_bnd	PF13949.1	gi|385804730|ref|YP_005841130.1|	-	1.7	7.5	9.2	4.7	6.0	0.9	2.1	2	0	0	2	2	2	0	ALIX	V-shaped	domain	binding	to	HIV
DUF4200	PF13863.1	gi|385804730|ref|YP_005841130.1|	-	3.2	7.7	10.3	1.5	8.7	0.5	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4200)
KfrA_N	PF11740.3	gi|385804730|ref|YP_005841130.1|	-	4.1	7.8	10.3	3.7	8.0	0.5	2.5	2	0	0	2	2	2	0	Plasmid	replication	region	DNA-binding	N-term
ATP-synt_B	PF00430.13	gi|385804731|ref|YP_005841131.1|	-	2.9e-06	27.1	27.3	0.0017	18.1	4.1	2.5	1	1	1	2	2	2	2	ATP	synthase	B/B'	CF(0)
DUF3552	PF12072.3	gi|385804731|ref|YP_005841131.1|	-	0.00016	20.9	26.7	0.00039	19.6	13.3	2.0	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF3552)
HrpE	PF06188.7	gi|385804731|ref|YP_005841131.1|	-	0.021	14.5	13.1	0.039	13.7	9.1	1.5	1	1	0	1	1	1	0	HrpE/YscL/FliH	and	V-type	ATPase	subunit	E
DUF883	PF05957.8	gi|385804731|ref|YP_005841131.1|	-	0.078	13.3	15.2	1.2	9.5	4.8	2.1	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
V-ATPase_G	PF03179.10	gi|385804731|ref|YP_005841131.1|	-	0.29	11.4	27.3	7.7	6.8	18.9	2.4	1	1	0	1	1	1	0	Vacuolar	(H+)-ATPase	G	subunit
PP_kinase_N	PF13089.1	gi|385804731|ref|YP_005841131.1|	-	0.55	10.3	5.9	0.23	11.5	1.3	1.9	1	1	1	2	2	2	0	Polyphosphate	kinase	N-terminal	domain
DUF445	PF04286.7	gi|385804731|ref|YP_005841131.1|	-	0.97	8.8	8.6	1.2	8.6	5.9	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF445)
Phage_GPO	PF05929.6	gi|385804731|ref|YP_005841131.1|	-	1	8.5	8.2	1.1	8.4	5.7	1.1	1	0	0	1	1	1	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
DUF4102	PF13356.1	gi|385804731|ref|YP_005841131.1|	-	1.3	8.9	11.9	1.2	9.0	2.3	2.7	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4102)
DivIVA	PF05103.8	gi|385804731|ref|YP_005841131.1|	-	1.4	9.0	18.2	3.9	7.5	7.2	2.1	1	1	1	2	2	2	0	DivIVA	protein
Caudo_TAP	PF02413.12	gi|385804731|ref|YP_005841131.1|	-	1.4	9.0	15.9	4.6	7.4	6.5	2.6	1	1	2	3	3	3	0	Caudovirales	tail	fibre	assembly	protein
Muted	PF14942.1	gi|385804731|ref|YP_005841131.1|	-	1.6	8.6	13.2	2.7	7.8	9.1	1.4	1	1	0	1	1	1	0	Organelle	biogenesis,	Muted-like	protein
Mnd1	PF03962.10	gi|385804731|ref|YP_005841131.1|	-	3.6	7.2	12.0	4.6	6.8	8.3	1.2	1	0	0	1	1	1	0	Mnd1	family
Med8	PF10232.4	gi|385804731|ref|YP_005841131.1|	-	4	6.8	11.4	4.4	6.7	7.9	1.1	1	0	0	1	1	1	0	Mediator	of	RNA	polymerase	II	transcription	complex	subunit	8
DUF2252	PF10009.4	gi|385804731|ref|YP_005841131.1|	-	4.1	6.1	7.9	4.7	5.9	5.5	1.0	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2252)
LUC7	PF03194.10	gi|385804731|ref|YP_005841131.1|	-	4.2	6.8	12.0	5	6.5	8.3	1.1	1	0	0	1	1	1	0	LUC7	N_terminus
KfrA_N	PF11740.3	gi|385804731|ref|YP_005841131.1|	-	4.7	7.6	25.0	1.1	9.7	9.1	2.3	1	1	1	2	2	2	0	Plasmid	replication	region	DNA-binding	N-term
DUF3135	PF11333.3	gi|385804731|ref|YP_005841131.1|	-	5.2	7.3	6.1	3.2	7.9	0.9	2.4	1	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3135)
Atg14	PF10186.4	gi|385804731|ref|YP_005841131.1|	-	7.6	5.3	9.1	11	4.9	6.3	1.3	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
HAUS6_N	PF14661.1	gi|385804731|ref|YP_005841131.1|	-	8.2	5.6	11.0	11	5.3	7.6	1.1	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	6	N-terminus
Sds3	PF08598.6	gi|385804731|ref|YP_005841131.1|	-	8.5	5.8	13.3	11	5.4	9.2	1.3	1	0	0	1	1	1	0	Sds3-like
ISG65-75	PF11727.3	gi|385804731|ref|YP_005841131.1|	-	8.6	5.3	13.9	11	4.9	8.7	1.7	1	1	0	1	1	1	0	Invariant	surface	glycoprotein
Methyltransf_11	PF08241.7	gi|385804732|ref|YP_005841132.1|	-	3.2e-22	78.8	0.0	5.2e-22	78.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|385804732|ref|YP_005841132.1|	-	9e-17	61.2	0.0	1.1e-16	60.9	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|385804732|ref|YP_005841132.1|	-	9e-16	57.8	0.0	1.2e-15	57.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|385804732|ref|YP_005841132.1|	-	3.3e-14	52.5	0.0	4.7e-11	42.2	0.0	2.1	1	1	1	2	2	2	2	ubiE/COQ5	methyltransferase	family
Methyltransf_25	PF13649.1	gi|385804732|ref|YP_005841132.1|	-	2.3e-13	50.3	0.0	4.1e-13	49.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|385804732|ref|YP_005841132.1|	-	3.2e-12	46.8	0.0	4.8e-12	46.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|385804732|ref|YP_005841132.1|	-	3.9e-11	43.5	0.0	6.2e-11	42.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|385804732|ref|YP_005841132.1|	-	7.7e-09	35.6	0.0	1.4e-08	34.7	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
RrnaAD	PF00398.15	gi|385804732|ref|YP_005841132.1|	-	6e-06	25.4	0.0	7.5e-06	25.1	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
MetW	PF07021.7	gi|385804732|ref|YP_005841132.1|	-	2.9e-05	23.5	0.0	4e-05	23.0	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
PCMT	PF01135.14	gi|385804732|ref|YP_005841132.1|	-	0.00015	21.3	0.0	0.00052	19.6	0.0	1.9	2	1	0	2	2	2	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
CMAS	PF02353.15	gi|385804732|ref|YP_005841132.1|	-	0.00022	20.3	0.0	0.00036	19.6	0.0	1.4	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
MTS	PF05175.9	gi|385804732|ref|YP_005841132.1|	-	0.00068	19.0	0.0	0.001	18.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_9	PF08003.6	gi|385804732|ref|YP_005841132.1|	-	0.0032	16.2	0.0	0.004	15.9	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
NodS	PF05401.6	gi|385804732|ref|YP_005841132.1|	-	0.0046	16.3	0.0	0.006	16.0	0.0	1.1	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
Methyltransf_29	PF03141.11	gi|385804732|ref|YP_005841132.1|	-	0.014	13.7	0.0	0.018	13.4	0.0	1.1	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
ADPrib_exo_Tox	PF03496.9	gi|385804732|ref|YP_005841132.1|	-	0.036	13.2	0.0	0.11	11.7	0.0	1.7	2	0	0	2	2	2	0	ADP-ribosyltransferase	exoenzyme
Methyltransf_2	PF00891.13	gi|385804732|ref|YP_005841132.1|	-	0.037	13.2	0.0	0.059	12.5	0.0	1.2	1	0	0	1	1	1	0	O-methyltransferase
Methyltransf_32	PF13679.1	gi|385804732|ref|YP_005841132.1|	-	0.11	12.1	0.0	0.19	11.4	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
DUF1628	PF07790.6	gi|385804733|ref|YP_005841133.1|	-	1.8	9.3	4.8	8	7.2	3.3	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1628)
polyprenyl_synt	PF00348.12	gi|385804736|ref|YP_005841136.1|	-	2.1e-53	180.8	0.2	2.6e-53	180.5	0.1	1.1	1	0	0	1	1	1	1	Polyprenyl	synthetase
DUF373	PF04123.8	gi|385804737|ref|YP_005841137.1|	-	1.2e-117	392.7	8.9	1.4e-117	392.5	6.2	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
MARVEL	PF01284.18	gi|385804737|ref|YP_005841137.1|	-	0.27	11.0	10.3	5.8	6.7	0.4	2.3	1	1	1	2	2	2	0	Membrane-associating	domain
Radical_SAM	PF04055.16	gi|385804738|ref|YP_005841138.1|	-	5.7e-05	23.3	0.0	0.0077	16.4	0.0	2.2	2	0	0	2	2	2	2	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|385804738|ref|YP_005841138.1|	-	0.001	19.0	0.0	0.0019	18.2	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|385804738|ref|YP_005841138.1|	-	0.0018	18.3	0.0	0.0037	17.3	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
DUF4134	PF13572.1	gi|385804739|ref|YP_005841139.1|	-	0.0044	17.1	3.4	0.0045	17.0	0.1	2.5	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4134)
DUF3955	PF13127.1	gi|385804739|ref|YP_005841139.1|	-	0.092	12.3	0.2	0.092	12.3	0.1	4.1	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF3955)
DUF1705	PF08019.7	gi|385804739|ref|YP_005841139.1|	-	0.13	11.8	2.3	0.53	9.7	0.2	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1705)
TRAM	PF01938.15	gi|385804740|ref|YP_005841140.1|	-	5.9e-08	32.3	0.1	9.5e-08	31.7	0.1	1.3	1	0	0	1	1	1	1	TRAM	domain
TRAP_alpha	PF03896.11	gi|385804740|ref|YP_005841140.1|	-	0.033	13.1	1.3	0.046	12.7	0.9	1.2	1	0	0	1	1	1	0	Translocon-associated	protein	(TRAP),	alpha	subunit
Metaviral_G	PF09595.5	gi|385804740|ref|YP_005841140.1|	-	0.051	13.2	2.8	0.068	12.7	2.0	1.1	1	0	0	1	1	1	0	Metaviral_G	glycoprotein
Bd3614_N	PF14442.1	gi|385804740|ref|YP_005841140.1|	-	0.11	12.4	3.5	0.15	12.0	2.4	1.2	1	0	0	1	1	1	0	Bd3614-like	deaminase	N-terminal
TFX_C	PF14601.1	gi|385804741|ref|YP_005841141.1|	-	2.1e-32	110.7	0.0	3.1e-32	110.2	0.0	1.2	1	0	0	1	1	1	1	DNA_binding	protein,	TFX,	C-term
Sigma70_r4	PF04545.11	gi|385804741|ref|YP_005841141.1|	-	1.7e-05	23.9	0.5	2.8e-05	23.3	0.3	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
GerE	PF00196.14	gi|385804741|ref|YP_005841141.1|	-	3.6e-05	22.9	0.4	9.4e-05	21.6	0.1	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	luxR	family
RepB	PF07506.6	gi|385804741|ref|YP_005841141.1|	-	0.00077	19.3	0.1	0.0012	18.7	0.1	1.3	1	0	0	1	1	1	1	RepB	plasmid	partitioning	protein
Sigma70_r4_2	PF08281.7	gi|385804741|ref|YP_005841141.1|	-	0.0015	17.9	0.2	0.0035	16.7	0.1	1.7	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_23	PF13384.1	gi|385804741|ref|YP_005841141.1|	-	0.0018	17.8	0.3	0.0045	16.6	0.2	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
KorB	PF08535.5	gi|385804741|ref|YP_005841141.1|	-	0.0031	17.6	0.2	3.3	7.9	0.0	2.4	1	1	0	2	2	2	2	KorB	domain
HTH_7	PF02796.10	gi|385804741|ref|YP_005841141.1|	-	0.0058	16.4	0.0	0.014	15.2	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_3	PF01381.17	gi|385804741|ref|YP_005841141.1|	-	0.01	15.6	0.1	0.024	14.4	0.1	1.6	1	0	0	1	1	1	0	Helix-turn-helix
HTH_37	PF13744.1	gi|385804741|ref|YP_005841141.1|	-	0.018	14.8	0.0	0.036	13.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_31	PF13560.1	gi|385804741|ref|YP_005841141.1|	-	0.022	14.9	2.1	0.054	13.7	1.5	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
AP_endonuc_2	PF01261.19	gi|385804741|ref|YP_005841141.1|	-	0.084	12.1	0.1	0.11	11.7	0.1	1.2	1	0	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
NTP_transferase	PF00483.18	gi|385804742|ref|YP_005841142.1|	-	6.2e-39	133.7	0.0	3.5e-38	131.3	0.0	2.0	2	0	0	2	2	2	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|385804742|ref|YP_005841142.1|	-	2.2e-10	40.8	0.5	2.4e-09	37.4	0.0	2.2	2	0	0	2	2	2	1	MobA-like	NTP	transferase	domain
MannoseP_isomer	PF01050.13	gi|385804742|ref|YP_005841142.1|	-	1.1e-05	25.1	0.2	0.0017	17.9	0.0	2.4	2	0	0	2	2	2	2	Mannose-6-phosphate	isomerase
CRA	PF06589.6	gi|385804742|ref|YP_005841142.1|	-	0.087	12.1	1.0	0.16	11.2	0.0	1.9	2	0	0	2	2	2	0	Circumsporozoite-related	antigen	(CRA)
NYAP_C	PF15452.1	gi|385804743|ref|YP_005841143.1|	-	0.0078	15.2	0.8	0.0091	15.0	0.5	1.0	1	0	0	1	1	1	1	Neuronal	tyrosine-phosphorylated	phosphoinositide-3-kinase	adapter
tRNA_anti-codon	PF01336.20	gi|385804744|ref|YP_005841144.1|	-	0.00086	19.1	0.2	0.009	15.8	0.0	2.4	2	0	0	2	2	2	1	OB-fold	nucleic	acid	binding	domain
PqqD	PF05402.7	gi|385804744|ref|YP_005841144.1|	-	0.048	13.6	3.6	0.057	13.4	0.8	2.5	2	1	0	2	2	2	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
RHH_1	PF01402.16	gi|385804746|ref|YP_005841146.1|	-	1.6e-06	27.7	0.3	7.2e-06	25.6	0.1	2.3	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
DUF3562	PF12085.3	gi|385804746|ref|YP_005841146.1|	-	0.0063	16.3	0.3	0.024	14.4	0.0	2.0	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3562)
RHH_3	PF12651.2	gi|385804746|ref|YP_005841146.1|	-	0.0099	15.5	0.1	0.018	14.7	0.1	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	domain
HicB	PF05534.7	gi|385804746|ref|YP_005841146.1|	-	0.062	12.8	0.5	0.34	10.5	0.0	2.0	2	0	0	2	2	2	0	HicB	family
Glutaredoxin2_C	PF04399.8	gi|385804746|ref|YP_005841146.1|	-	0.086	12.4	1.5	0.46	10.0	0.5	1.9	2	0	0	2	2	2	0	Glutaredoxin	2,	C	terminal	domain
Topoisom_I	PF01028.15	gi|385804746|ref|YP_005841146.1|	-	0.09	11.8	0.0	0.12	11.4	0.0	1.2	1	0	0	1	1	1	0	Eukaryotic	DNA	topoisomerase	I,	catalytic	core
Sec2p	PF06428.6	gi|385804746|ref|YP_005841146.1|	-	0.15	11.9	6.7	0.32	10.8	4.7	1.7	1	1	0	1	1	1	0	GDP/GTP	exchange	factor	Sec2p
Spc24	PF08286.6	gi|385804746|ref|YP_005841146.1|	-	0.18	11.4	3.2	0.31	10.7	2.2	1.4	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
Condensation	PF00668.15	gi|385804746|ref|YP_005841146.1|	-	0.25	10.1	3.0	0.74	8.6	0.0	2.0	2	0	0	2	2	2	0	Condensation	domain
IncA	PF04156.9	gi|385804746|ref|YP_005841146.1|	-	3.7	7.1	8.3	4.5	6.8	5.7	1.5	1	1	0	1	1	1	0	IncA	protein
ABC_tran	PF00005.22	gi|385804748|ref|YP_005841148.1|	-	2.5e-33	115.2	0.0	3.6e-33	114.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385804748|ref|YP_005841148.1|	-	3.4e-12	46.9	0.1	5.7e-06	26.4	0.1	2.1	1	1	1	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|385804748|ref|YP_005841148.1|	-	3.5e-06	26.4	0.7	0.0044	16.2	0.1	2.1	1	1	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|385804748|ref|YP_005841148.1|	-	1.9e-05	23.9	0.4	0.00087	18.4	0.1	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|385804748|ref|YP_005841148.1|	-	2.4e-05	23.7	0.0	4.8e-05	22.8	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|385804748|ref|YP_005841148.1|	-	2.8e-05	24.5	0.2	6e-05	23.4	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|385804748|ref|YP_005841148.1|	-	6.8e-05	23.0	0.2	0.00086	19.4	0.1	2.4	1	1	1	2	2	2	1	AAA	domain
AAA_10	PF12846.2	gi|385804748|ref|YP_005841148.1|	-	9.7e-05	21.9	0.1	0.0057	16.1	0.0	2.2	2	0	0	2	2	2	1	AAA-like	domain
DUF258	PF03193.11	gi|385804748|ref|YP_005841148.1|	-	0.00027	20.1	0.0	0.00048	19.3	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_17	PF13207.1	gi|385804748|ref|YP_005841148.1|	-	0.0038	18.0	0.1	0.0063	17.3	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
MutS_V	PF00488.16	gi|385804748|ref|YP_005841148.1|	-	0.0038	16.6	0.0	0.0067	15.8	0.0	1.3	1	0	0	1	1	1	1	MutS	domain	V
Arch_ATPase	PF01637.13	gi|385804748|ref|YP_005841148.1|	-	0.01	15.5	0.0	0.025	14.3	0.0	1.6	2	0	0	2	2	2	0	Archaeal	ATPase
Miro	PF08477.8	gi|385804748|ref|YP_005841148.1|	-	0.011	16.1	0.0	0.028	14.9	0.0	1.7	1	0	0	1	1	1	0	Miro-like	protein
cobW	PF02492.14	gi|385804748|ref|YP_005841148.1|	-	0.012	15.0	0.2	0.025	14.0	0.0	1.6	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_16	PF13191.1	gi|385804748|ref|YP_005841148.1|	-	0.013	15.5	0.8	0.11	12.5	0.6	2.1	1	1	0	1	1	1	0	AAA	ATPase	domain
MMR_HSR1	PF01926.18	gi|385804748|ref|YP_005841148.1|	-	0.013	15.4	1.0	0.062	13.2	0.7	2.1	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_25	PF13481.1	gi|385804748|ref|YP_005841148.1|	-	0.014	14.8	0.0	0.086	12.2	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
NACHT	PF05729.7	gi|385804748|ref|YP_005841148.1|	-	0.015	14.9	0.8	0.033	13.8	0.2	1.7	2	0	0	2	2	2	0	NACHT	domain
AAA_30	PF13604.1	gi|385804748|ref|YP_005841148.1|	-	0.018	14.6	0.1	0.071	12.6	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_14	PF13173.1	gi|385804748|ref|YP_005841148.1|	-	0.031	14.1	0.0	0.088	12.7	0.0	1.8	2	1	0	2	2	2	0	AAA	domain
Dynamin_N	PF00350.18	gi|385804748|ref|YP_005841148.1|	-	0.044	13.6	0.3	0.38	10.5	0.1	2.0	2	0	0	2	2	2	0	Dynamin	family
AAA_18	PF13238.1	gi|385804748|ref|YP_005841148.1|	-	0.044	14.0	0.5	0.09	13.0	0.4	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|385804748|ref|YP_005841148.1|	-	0.052	13.4	0.3	0.12	12.2	0.1	1.7	2	1	0	2	2	1	0	AAA	domain
NB-ARC	PF00931.17	gi|385804748|ref|YP_005841148.1|	-	0.054	12.3	0.3	0.1	11.4	0.0	1.5	2	0	0	2	2	2	0	NB-ARC	domain
MobB	PF03205.9	gi|385804748|ref|YP_005841148.1|	-	0.065	12.9	0.1	0.11	12.1	0.1	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
T2SE	PF00437.15	gi|385804748|ref|YP_005841148.1|	-	0.074	11.9	0.1	0.14	11.0	0.1	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
GTP_EFTU	PF00009.22	gi|385804748|ref|YP_005841148.1|	-	0.076	12.4	0.2	0.38	10.1	0.0	2.1	2	1	1	3	3	3	0	Elongation	factor	Tu	GTP	binding	domain
AAA_24	PF13479.1	gi|385804748|ref|YP_005841148.1|	-	0.12	11.8	0.0	0.19	11.2	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Guanylate_kin	PF00625.16	gi|385804748|ref|YP_005841148.1|	-	0.13	11.6	0.4	3.6	6.9	0.0	2.2	2	0	0	2	2	2	0	Guanylate	kinase
ABC_tran	PF00005.22	gi|385804749|ref|YP_005841149.1|	-	1.1e-31	110.0	0.0	1.5e-31	109.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385804749|ref|YP_005841149.1|	-	1.2e-14	54.9	0.6	2.1e-06	27.9	0.1	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|385804749|ref|YP_005841149.1|	-	0.00023	20.6	0.1	0.00048	19.6	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|385804749|ref|YP_005841149.1|	-	0.00074	19.9	0.2	0.0014	19.0	0.2	1.4	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|385804749|ref|YP_005841149.1|	-	0.0034	16.6	1.2	0.12	11.6	0.9	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
DUF258	PF03193.11	gi|385804749|ref|YP_005841149.1|	-	0.0038	16.4	0.0	0.0062	15.7	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
FlbD	PF06289.6	gi|385804749|ref|YP_005841149.1|	-	0.0076	15.6	0.3	0.014	14.7	0.2	1.5	1	0	0	1	1	1	1	Flagellar	protein	(FlbD)
ABC_ATPase	PF09818.4	gi|385804749|ref|YP_005841149.1|	-	0.0089	14.6	0.1	0.68	8.4	0.0	2.2	2	0	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
BCA_ABC_TP_C	PF12399.3	gi|385804749|ref|YP_005841149.1|	-	0.016	14.8	0.5	0.042	13.5	0.4	1.7	1	1	0	1	1	1	0	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_16	PF13191.1	gi|385804749|ref|YP_005841149.1|	-	0.016	15.1	1.4	0.72	9.8	1.0	2.1	1	1	0	1	1	1	0	AAA	ATPase	domain
MMR_HSR1	PF01926.18	gi|385804749|ref|YP_005841149.1|	-	0.025	14.5	0.0	0.044	13.7	0.0	1.5	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
Zeta_toxin	PF06414.7	gi|385804749|ref|YP_005841149.1|	-	0.053	12.6	0.0	0.082	11.9	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
DUF2813	PF11398.3	gi|385804749|ref|YP_005841149.1|	-	0.055	12.5	0.0	0.08	12.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2813)
AAA_15	PF13175.1	gi|385804749|ref|YP_005841149.1|	-	0.093	11.7	0.1	5.9	5.8	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_30	PF13604.1	gi|385804749|ref|YP_005841149.1|	-	0.14	11.6	0.0	0.22	11.0	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|385804749|ref|YP_005841149.1|	-	0.32	11.1	2.8	5	7.2	1.9	2.4	1	1	0	1	1	1	0	AAA	domain
BPD_transp_2	PF02653.11	gi|385804750|ref|YP_005841150.1|	-	2.8e-36	124.8	39.4	3.4e-36	124.5	27.3	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.11	gi|385804751|ref|YP_005841151.1|	-	1.8e-47	161.5	26.5	2e-47	161.3	18.4	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
Dexa_ind	PF15198.1	gi|385804751|ref|YP_005841151.1|	-	0.22	11.4	1.9	4.4	7.2	0.1	2.5	2	0	0	2	2	2	0	Dexamethasone-induced
Peripla_BP_6	PF13458.1	gi|385804752|ref|YP_005841152.1|	-	7e-44	150.5	7.5	8.7e-44	150.2	5.2	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.23	gi|385804752|ref|YP_005841152.1|	-	7.1e-26	90.8	0.0	8.2e-26	90.6	0.0	1.0	1	0	0	1	1	1	1	Receptor	family	ligand	binding	region
Peripla_BP_5	PF13433.1	gi|385804752|ref|YP_005841152.1|	-	7.3e-14	51.2	0.0	1.4e-08	33.9	0.0	2.1	2	0	0	2	2	2	2	Periplasmic	binding	protein	domain
PhoU	PF01895.14	gi|385804754|ref|YP_005841154.1|	-	8.5e-38	128.6	8.5	5.2e-21	74.8	2.2	2.1	2	0	0	2	2	2	2	PhoU	domain
ATP-synt_D	PF01813.12	gi|385804754|ref|YP_005841154.1|	-	0.019	14.5	0.1	0.037	13.5	0.0	1.5	1	0	0	1	1	1	0	ATP	synthase	subunit	D
PhoU	PF01895.14	gi|385804755|ref|YP_005841155.1|	-	1.3e-24	86.4	9.2	1.1e-16	60.9	1.1	2.4	2	0	0	2	2	2	2	PhoU	domain
Antitoxin-MazE	PF04014.13	gi|385804755|ref|YP_005841155.1|	-	8.2e-11	41.3	0.0	1.9e-10	40.2	0.0	1.7	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
PhoU_div	PF01865.11	gi|385804755|ref|YP_005841155.1|	-	0.0034	16.5	1.4	0.0034	16.5	1.0	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF47
Ribosomal_S8e	PF01201.17	gi|385804756|ref|YP_005841156.1|	-	1.2e-31	109.6	1.2	1.3e-31	109.4	0.8	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S8e
DUF2240	PF09999.4	gi|385804757|ref|YP_005841157.1|	-	4.6e-52	175.2	0.1	5.4e-52	175.0	0.1	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2240)
CPSase_L_D2	PF02786.12	gi|385804758|ref|YP_005841158.1|	-	2.6e-95	317.7	0.2	1.6e-57	194.2	0.0	2.9	2	1	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
CPSase_L_chain	PF00289.17	gi|385804758|ref|YP_005841158.1|	-	5.6e-46	155.1	0.6	8e-22	77.4	0.1	2.6	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
ATP-grasp_4	PF13535.1	gi|385804758|ref|YP_005841158.1|	-	4.1e-27	95.1	0.0	7.1e-15	55.2	0.0	2.7	2	0	0	2	2	2	2	ATP-grasp	domain
CPSase_L_D3	PF02787.14	gi|385804758|ref|YP_005841158.1|	-	4.8e-23	81.2	0.1	1e-22	80.1	0.1	1.5	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthetase	large	chain,	oligomerisation	domain
ATPgrasp_Ter	PF15632.1	gi|385804758|ref|YP_005841158.1|	-	4.1e-19	68.5	0.0	4.7e-10	38.7	0.0	4.0	3	1	0	3	3	3	3	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
Dala_Dala_lig_C	PF07478.8	gi|385804758|ref|YP_005841158.1|	-	1.9e-12	47.0	0.0	2.1e-08	33.7	0.0	2.6	2	1	0	2	2	2	2	D-ala	D-ala	ligase	C-terminus
ATP-grasp	PF02222.17	gi|385804758|ref|YP_005841158.1|	-	2.6e-12	46.4	0.0	1.1e-06	28.1	0.0	2.4	2	0	0	2	2	2	2	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|385804758|ref|YP_005841158.1|	-	1.3e-09	38.1	0.1	8e-05	22.5	0.0	2.6	2	0	0	2	2	2	2	ATP-grasp	domain
FxsA	PF04186.8	gi|385804762|ref|YP_005841162.1|	-	2.6e-29	101.2	7.8	3.1e-29	101.0	5.4	1.0	1	0	0	1	1	1	1	FxsA	cytoplasmic	membrane	protein
Thioredox_DsbH	PF03190.10	gi|385804763|ref|YP_005841163.1|	-	1.3e-27	96.5	0.0	2.2e-27	95.7	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF255
Thioredoxin_7	PF13899.1	gi|385804763|ref|YP_005841163.1|	-	1.2e-12	47.6	0.0	2.7e-12	46.5	0.0	1.6	1	0	0	1	1	1	1	Thioredoxin-like
Thioredoxin	PF00085.15	gi|385804763|ref|YP_005841163.1|	-	2.3e-07	30.4	0.0	4.3e-07	29.5	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|385804763|ref|YP_005841163.1|	-	0.00018	21.6	0.0	0.00076	19.6	0.0	2.0	1	1	0	1	1	1	1	Thioredoxin-like	domain
GCHY-1	PF02649.9	gi|385804764|ref|YP_005841164.1|	-	2.7e-85	285.9	2.4	3.1e-85	285.7	1.7	1.0	1	0	0	1	1	1	1	Type	I	GTP	cyclohydrolase	folE2
DNA_pol_B_palm	PF14792.1	gi|385804764|ref|YP_005841164.1|	-	0.042	13.9	0.0	0.11	12.5	0.0	1.7	1	0	0	1	1	1	0	DNA	polymerase	beta	palm
DUF4167	PF13763.1	gi|385804764|ref|YP_005841164.1|	-	0.11	12.5	3.5	0.13	12.3	1.5	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4167)
Pyr_redox_2	PF07992.9	gi|385804766|ref|YP_005841166.1|	-	4.5e-30	105.0	0.2	5.8e-30	104.6	0.1	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|385804766|ref|YP_005841166.1|	-	1.1e-07	32.1	0.5	6.2e-05	23.3	0.0	2.8	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|385804766|ref|YP_005841166.1|	-	0.00052	20.1	2.1	0.021	14.8	0.2	3.3	2	1	1	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|385804766|ref|YP_005841166.1|	-	0.0088	14.9	2.9	6.2	5.6	0.0	3.5	4	0	0	4	4	4	2	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|385804766|ref|YP_005841166.1|	-	0.047	13.7	2.2	0.92	9.5	0.0	3.0	3	0	0	3	3	3	0	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.9	gi|385804766|ref|YP_005841166.1|	-	0.057	11.8	0.0	5.4	5.3	0.0	2.9	3	1	0	3	3	3	0	HI0933-like	protein
NAD_binding_9	PF13454.1	gi|385804766|ref|YP_005841166.1|	-	0.11	12.2	3.8	11	5.7	0.0	3.7	4	0	0	4	4	4	0	FAD-NAD(P)-binding
Amino_oxidase	PF01593.19	gi|385804768|ref|YP_005841168.1|	-	4.6e-21	75.4	0.2	1.4e-16	60.6	0.0	2.1	2	0	0	2	2	2	2	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.1	gi|385804768|ref|YP_005841168.1|	-	4.3e-13	49.0	2.6	8.5e-13	48.1	0.3	2.6	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.9	gi|385804768|ref|YP_005841168.1|	-	1.2e-06	28.6	0.2	7.2e-05	22.7	0.1	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|385804768|ref|YP_005841168.1|	-	1.3e-06	27.5	0.9	3.5e-06	26.1	0.4	1.8	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|385804768|ref|YP_005841168.1|	-	8.7e-06	24.8	3.4	1.6e-05	23.9	2.4	1.4	1	0	0	1	1	1	1	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|385804768|ref|YP_005841168.1|	-	0.0002	20.5	0.7	0.00034	19.8	0.5	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
GIDA	PF01134.17	gi|385804768|ref|YP_005841168.1|	-	0.00028	19.8	0.5	0.00061	18.7	0.4	1.6	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Pyr_redox_3	PF13738.1	gi|385804768|ref|YP_005841168.1|	-	0.00077	19.5	0.3	0.0018	18.3	0.2	1.7	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|385804768|ref|YP_005841168.1|	-	0.0017	16.9	1.7	0.0026	16.2	1.2	1.2	1	0	0	1	1	1	1	HI0933-like	protein
Pyr_redox	PF00070.22	gi|385804768|ref|YP_005841168.1|	-	0.0059	16.9	2.8	0.016	15.5	0.5	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.12	gi|385804768|ref|YP_005841168.1|	-	0.0093	15.0	2.7	0.023	13.7	1.0	2.2	2	0	0	2	2	2	1	Thi4	family
Trp_halogenase	PF04820.9	gi|385804768|ref|YP_005841168.1|	-	0.016	13.8	0.9	0.038	12.6	0.3	1.8	2	0	0	2	2	2	0	Tryptophan	halogenase
NAD_binding_9	PF13454.1	gi|385804768|ref|YP_005841168.1|	-	0.023	14.4	0.1	0.06	13.1	0.1	1.7	1	0	0	1	1	1	0	FAD-NAD(P)-binding
NAD_binding_2	PF03446.10	gi|385804768|ref|YP_005841168.1|	-	0.045	13.5	0.1	0.1	12.4	0.1	1.6	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
3HCDH_N	PF02737.13	gi|385804768|ref|YP_005841168.1|	-	0.045	13.3	0.4	0.076	12.6	0.3	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
FMO-like	PF00743.14	gi|385804768|ref|YP_005841168.1|	-	0.074	11.2	0.0	0.1	10.7	0.0	1.1	1	0	0	1	1	1	0	Flavin-binding	monooxygenase-like
Lycopene_cycl	PF05834.7	gi|385804768|ref|YP_005841168.1|	-	0.083	11.7	0.1	0.17	10.7	0.1	1.5	1	0	0	1	1	1	0	Lycopene	cyclase	protein
ApbA	PF02558.11	gi|385804768|ref|YP_005841168.1|	-	0.12	11.8	1.6	0.23	10.8	1.1	1.5	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
FAD_binding_3	PF01494.14	gi|385804768|ref|YP_005841168.1|	-	0.2	10.6	1.7	0.38	9.7	1.1	1.5	1	0	0	1	1	1	0	FAD	binding	domain
GHMP_kinases_N	PF00288.21	gi|385804769|ref|YP_005841169.1|	-	5.2e-15	55.2	2.3	1.9e-14	53.4	1.6	2.1	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|385804769|ref|YP_005841169.1|	-	1.1e-06	28.6	0.2	2.3e-06	27.6	0.1	1.6	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
Tubulin	PF00091.20	gi|385804769|ref|YP_005841169.1|	-	0.033	14.0	0.1	0.048	13.4	0.1	1.2	1	0	0	1	1	1	0	Tubulin/FtsZ	family,	GTPase	domain
SOR_SNZ	PF01680.12	gi|385804770|ref|YP_005841170.1|	-	1e-97	325.8	3.7	1.3e-97	325.4	2.6	1.1	1	0	0	1	1	1	1	SOR/SNZ	family
ThiG	PF05690.9	gi|385804770|ref|YP_005841170.1|	-	1.2e-09	37.5	2.6	1.8e-06	27.2	0.4	2.3	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
Dus	PF01207.12	gi|385804770|ref|YP_005841170.1|	-	0.01	14.7	0.2	0.074	11.8	0.1	2.1	2	0	0	2	2	2	0	Dihydrouridine	synthase	(Dus)
IGPS	PF00218.16	gi|385804770|ref|YP_005841170.1|	-	0.011	14.7	0.0	0.062	12.3	0.0	2.0	2	0	0	2	2	2	0	Indole-3-glycerol	phosphate	synthase
OMPdecase	PF00215.19	gi|385804770|ref|YP_005841170.1|	-	0.059	12.7	0.1	0.11	11.8	0.0	1.5	1	0	0	1	1	1	0	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
NanE	PF04131.9	gi|385804770|ref|YP_005841170.1|	-	0.098	11.6	0.6	0.24	10.3	0.0	1.9	2	1	0	2	2	2	0	Putative	N-acetylmannosamine-6-phosphate	epimerase
DUF1405	PF07187.6	gi|385804771|ref|YP_005841171.1|	-	4e-51	173.0	16.2	4.7e-51	172.7	11.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1405)
Ins_allergen_rp	PF06757.8	gi|385804772|ref|YP_005841172.1|	-	0.002	17.6	1.6	0.0032	16.9	1.1	1.3	1	0	0	1	1	1	1	Insect	allergen	related	repeat,	nitrile-specifier	detoxification
ADC	PF06314.6	gi|385804772|ref|YP_005841172.1|	-	0.13	11.5	0.2	0.19	11.0	0.1	1.2	1	0	0	1	1	1	0	Acetoacetate	decarboxylase	(ADC)
DUF3311	PF11755.3	gi|385804774|ref|YP_005841174.1|	-	2.9e-15	55.5	8.0	2.9e-15	55.5	5.5	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3311)
Acyl_transf_3	PF01757.17	gi|385804774|ref|YP_005841174.1|	-	0.11	11.2	6.7	0.13	11.0	4.7	1.0	1	0	0	1	1	1	0	Acyltransferase	family
UbiA	PF01040.13	gi|385804774|ref|YP_005841174.1|	-	0.47	9.6	7.9	0.6	9.2	5.5	1.0	1	0	0	1	1	1	0	UbiA	prenyltransferase	family
Toprim_4	PF13662.1	gi|385804775|ref|YP_005841175.1|	-	2.8e-09	36.8	0.1	9.6e-09	35.1	0.1	2.0	1	0	0	1	1	1	1	Toprim	domain
Toprim_2	PF13155.1	gi|385804775|ref|YP_005841175.1|	-	0.016	15.5	0.0	0.042	14.1	0.0	1.7	1	0	0	1	1	1	0	Toprim-like
Acetyltransf_1	PF00583.19	gi|385804776|ref|YP_005841176.1|	-	8.6e-11	41.7	0.0	1.2e-10	41.2	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|385804776|ref|YP_005841176.1|	-	7.4e-07	29.2	0.1	2.5e-06	27.5	0.0	1.9	1	1	1	2	2	2	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|385804776|ref|YP_005841176.1|	-	0.00023	20.8	0.0	0.00042	20.0	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.1	gi|385804776|ref|YP_005841176.1|	-	0.0027	17.5	0.0	0.067	13.0	0.0	2.2	2	1	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|385804776|ref|YP_005841176.1|	-	0.0029	17.4	0.0	0.0037	17.1	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|385804776|ref|YP_005841176.1|	-	0.01	15.9	0.0	0.019	15.1	0.0	1.4	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
DUF92	PF01940.11	gi|385804777|ref|YP_005841177.1|	-	6.2e-65	218.5	14.3	6.2e-65	218.5	9.9	2.7	3	1	0	3	3	3	1	Integral	membrane	protein	DUF92
DUF46	PF01864.12	gi|385804777|ref|YP_005841177.1|	-	0.0051	16.7	2.9	0.0051	16.7	2.0	3.1	2	1	1	3	3	3	1	Putative	integral	membrane	protein	DUF46
Prenyltransf	PF01255.14	gi|385804778|ref|YP_005841178.1|	-	1.8e-27	95.9	0.0	7.3e-27	93.9	0.0	1.7	2	0	0	2	2	2	1	Putative	undecaprenyl	diphosphate	synthase
Prenyltransf	PF01255.14	gi|385804779|ref|YP_005841179.1|	-	2.6e-71	239.2	0.0	3.6e-71	238.8	0.0	1.1	1	0	0	1	1	1	1	Putative	undecaprenyl	diphosphate	synthase
DUF3744	PF12558.3	gi|385804781|ref|YP_005841181.1|	-	0.083	13.3	0.0	0.47	10.9	0.0	2.1	2	0	0	2	2	2	0	ATP-binding	cassette	cobalt	transporter
IGR	PF09597.5	gi|385804781|ref|YP_005841181.1|	-	0.15	11.9	0.0	1.5	8.7	0.0	2.2	2	0	0	2	2	2	0	IGR	protein	motif
NAD_binding_7	PF13241.1	gi|385804782|ref|YP_005841182.1|	-	8.8e-23	80.5	0.0	2e-22	79.3	0.0	1.6	1	1	1	2	2	2	1	Putative	NAD(P)-binding
Sirohm_synth_M	PF14824.1	gi|385804782|ref|YP_005841182.1|	-	9.1e-08	30.9	0.0	2.5e-07	29.5	0.0	1.8	1	0	0	1	1	1	1	Sirohaem	biosynthesis	protein	central
TrkA_N	PF02254.13	gi|385804782|ref|YP_005841182.1|	-	0.0035	17.3	0.1	0.017	15.1	0.1	2.1	1	1	0	1	1	1	1	TrkA-N	domain
PALP	PF00291.20	gi|385804782|ref|YP_005841182.1|	-	0.0036	16.5	0.1	0.0063	15.7	0.0	1.5	1	1	1	2	2	2	1	Pyridoxal-phosphate	dependent	enzyme
GlutR_N	PF05201.10	gi|385804783|ref|YP_005841183.1|	-	7.2e-33	113.3	2.5	8.1e-33	113.1	0.1	2.3	3	0	0	3	3	3	1	Glutamyl-tRNAGlu	reductase,	N-terminal	domain
Shikimate_DH	PF01488.15	gi|385804783|ref|YP_005841183.1|	-	3.5e-30	104.8	0.4	6.8e-30	103.9	0.3	1.5	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
GlutR_dimer	PF00745.15	gi|385804783|ref|YP_005841183.1|	-	9.3e-21	73.6	3.4	1.9e-20	72.6	2.3	1.5	1	0	0	1	1	1	1	Glutamyl-tRNAGlu	reductase,	dimerisation	domain
F420_oxidored	PF03807.12	gi|385804783|ref|YP_005841183.1|	-	1e-05	25.8	0.3	1e-05	25.8	0.2	2.6	3	1	0	3	3	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
Saccharop_dh	PF03435.13	gi|385804783|ref|YP_005841183.1|	-	5.2e-05	22.3	0.1	0.00011	21.3	0.0	1.5	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
NAD_binding_2	PF03446.10	gi|385804783|ref|YP_005841183.1|	-	8.1e-05	22.5	0.1	0.00023	21.0	0.0	1.7	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|385804783|ref|YP_005841183.1|	-	0.00018	20.7	0.1	0.00037	19.6	0.1	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.1	gi|385804783|ref|YP_005841183.1|	-	0.00042	20.5	0.2	0.0045	17.2	0.0	2.4	2	0	0	2	2	2	1	Putative	NAD(P)-binding
NAD_Gly3P_dh_N	PF01210.18	gi|385804783|ref|YP_005841183.1|	-	0.0056	16.4	0.1	0.011	15.4	0.1	1.5	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
TrkA_N	PF02254.13	gi|385804783|ref|YP_005841183.1|	-	0.0066	16.4	0.8	0.017	15.0	0.3	2.0	1	1	0	1	1	1	1	TrkA-N	domain
zf-C4H2	PF10146.4	gi|385804783|ref|YP_005841183.1|	-	0.0098	15.9	1.2	0.0098	15.9	0.8	1.6	2	0	0	2	2	1	1	Zinc	finger-containing	protein
3HCDH_N	PF02737.13	gi|385804783|ref|YP_005841183.1|	-	0.017	14.8	0.1	0.017	14.8	0.1	2.5	2	1	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.11	gi|385804783|ref|YP_005841183.1|	-	0.017	14.5	0.1	0.18	11.2	0.0	2.3	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
ThiF	PF00899.16	gi|385804783|ref|YP_005841183.1|	-	0.021	14.6	2.5	0.065	13.0	0.1	2.8	2	2	0	2	2	2	0	ThiF	family
AdoHcyase_NAD	PF00670.16	gi|385804783|ref|YP_005841183.1|	-	0.031	14.1	0.4	0.062	13.1	0.3	1.4	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
CPSase_L_chain	PF00289.17	gi|385804783|ref|YP_005841183.1|	-	0.031	14.3	0.3	0.1	12.6	0.2	1.9	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
DapB_N	PF01113.15	gi|385804783|ref|YP_005841183.1|	-	0.046	13.6	1.1	0.26	11.1	0.0	2.7	3	1	0	3	3	3	0	Dihydrodipicolinate	reductase,	N-terminus
GFO_IDH_MocA	PF01408.17	gi|385804783|ref|YP_005841183.1|	-	0.052	14.0	0.7	0.17	12.4	0.0	2.1	2	0	0	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
End3	PF12761.2	gi|385804783|ref|YP_005841183.1|	-	0.068	12.8	2.9	0.11	12.0	2.0	1.3	1	0	0	1	1	1	0	Actin	cytoskeleton-regulatory	complex	protein	END3
Peptidase_C58	PF03543.9	gi|385804783|ref|YP_005841183.1|	-	1.2	8.6	3.1	5.2	6.5	2.2	1.9	2	1	0	2	2	2	0	Yersinia/Haemophilus	virulence	surface	antigen
Pterin_4a	PF01329.14	gi|385804784|ref|YP_005841184.1|	-	1.2e-24	85.8	0.0	1.2e-24	85.8	0.0	1.0	1	0	0	1	1	1	1	Pterin	4	alpha	carbinolamine	dehydratase
HAD_2	PF13419.1	gi|385804785|ref|YP_005841185.1|	-	4e-23	82.5	0.0	5e-23	82.2	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|385804785|ref|YP_005841185.1|	-	1.5e-07	32.0	0.0	9.5e-06	26.1	0.0	2.2	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|385804785|ref|YP_005841185.1|	-	5.6e-07	29.9	0.0	9.4e-07	29.1	0.0	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|385804785|ref|YP_005841185.1|	-	0.0083	15.8	0.0	0.016	14.8	0.0	1.5	1	0	0	1	1	1	1	HAD-hyrolase-like
MoeA_N	PF03453.12	gi|385804786|ref|YP_005841186.1|	-	3.2e-45	153.3	2.5	5e-45	152.7	1.7	1.3	1	0	0	1	1	1	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.19	gi|385804786|ref|YP_005841186.1|	-	4e-27	94.3	0.1	6.4e-27	93.7	0.0	1.3	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
PBP_like	PF12727.2	gi|385804786|ref|YP_005841186.1|	-	6.4e-18	64.3	0.5	3.5e-17	62.0	0.0	2.4	2	1	0	2	2	2	1	PBP	superfamily	domain
MoeA_C	PF03454.10	gi|385804786|ref|YP_005841186.1|	-	9e-14	51.1	0.3	9.8e-13	47.8	0.1	2.5	2	0	0	2	2	2	1	MoeA	C-terminal	region	(domain	IV)
MoeA_N	PF03453.12	gi|385804787|ref|YP_005841187.1|	-	1.7e-40	138.0	0.6	2.8e-40	137.3	0.4	1.4	1	0	0	1	1	1	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.19	gi|385804787|ref|YP_005841187.1|	-	6.3e-27	93.7	0.2	1.2e-26	92.8	0.2	1.5	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
MoeA_C	PF03454.10	gi|385804787|ref|YP_005841187.1|	-	7.3e-14	51.4	4.9	2e-12	46.8	0.4	3.7	3	1	0	3	3	3	1	MoeA	C-terminal	region	(domain	IV)
HSP20	PF00011.16	gi|385804788|ref|YP_005841188.1|	-	5.6e-11	42.2	0.0	6.6e-11	41.9	0.0	1.1	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
PIH1	PF08190.7	gi|385804788|ref|YP_005841188.1|	-	0.017	14.5	0.0	0.023	14.1	0.0	1.1	1	0	0	1	1	1	0	pre-RNA	processing	PIH1/Nop17
ABC1	PF03109.11	gi|385804789|ref|YP_005841189.1|	-	2.3e-27	95.3	0.0	7.8e-27	93.6	0.0	1.8	2	0	0	2	2	2	1	ABC1	family
APH	PF01636.18	gi|385804789|ref|YP_005841189.1|	-	8.9e-05	22.3	0.2	0.046	13.4	0.0	3.0	1	1	0	2	2	2	2	Phosphotransferase	enzyme	family
DUF1469	PF07332.6	gi|385804789|ref|YP_005841189.1|	-	0.0044	16.7	0.2	0.018	14.7	0.1	2.0	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1469)
RIO1	PF01163.17	gi|385804789|ref|YP_005841189.1|	-	0.016	14.5	0.0	0.047	13.0	0.0	1.7	2	0	0	2	2	2	0	RIO1	family
Pkinase	PF00069.20	gi|385804789|ref|YP_005841189.1|	-	0.023	13.8	0.0	0.1	11.7	0.0	1.9	2	0	0	2	2	2	0	Protein	kinase	domain
eIF-5a	PF01287.15	gi|385804790|ref|YP_005841190.1|	-	5.6e-06	26.2	0.5	1.5e-05	24.8	0.4	1.8	1	1	0	1	1	1	1	Eukaryotic	elongation	factor	5A	hypusine,	DNA-binding	OB	fold
EFP_N	PF08207.7	gi|385804790|ref|YP_005841190.1|	-	0.032	14.0	0.0	0.066	13.0	0.0	1.5	1	0	0	1	1	1	0	Elongation	factor	P	(EF-P)	KOW-like	domain
Arginase	PF00491.16	gi|385804791|ref|YP_005841191.1|	-	1.8e-57	194.7	1.9	2.1e-57	194.5	1.3	1.0	1	0	0	1	1	1	1	Arginase	family
SurE	PF01975.12	gi|385804792|ref|YP_005841192.1|	-	4.6e-44	150.0	0.3	5.8e-44	149.7	0.2	1.1	1	0	0	1	1	1	1	Survival	protein	SurE
Methyltransf_23	PF13489.1	gi|385804793|ref|YP_005841193.1|	-	1.7e-05	24.5	0.0	3.6e-05	23.5	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|385804793|ref|YP_005841193.1|	-	3.4e-05	24.2	0.0	9e-05	22.8	0.0	1.8	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|385804793|ref|YP_005841193.1|	-	0.0002	21.6	0.0	0.00041	20.6	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|385804793|ref|YP_005841193.1|	-	0.0031	18.0	0.0	0.012	16.1	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
PALP	PF00291.20	gi|385804793|ref|YP_005841193.1|	-	0.02	14.1	0.0	0.034	13.3	0.0	1.3	1	0	0	1	1	1	0	Pyridoxal-phosphate	dependent	enzyme
Methyltransf_31	PF13847.1	gi|385804793|ref|YP_005841193.1|	-	0.041	13.4	0.0	0.082	12.5	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
Rsm22	PF09243.5	gi|385804793|ref|YP_005841193.1|	-	0.058	12.4	0.0	0.095	11.7	0.0	1.3	1	0	0	1	1	1	0	Mitochondrial	small	ribosomal	subunit	Rsm22
PCMT	PF01135.14	gi|385804793|ref|YP_005841193.1|	-	0.1	12.1	0.0	0.23	10.9	0.0	1.6	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_11	PF08241.7	gi|385804793|ref|YP_005841193.1|	-	0.14	12.6	0.0	0.46	11.0	0.0	2.0	1	0	0	1	1	1	0	Methyltransferase	domain
PDH	PF02153.12	gi|385804794|ref|YP_005841194.1|	-	7.2e-10	38.1	4.2	1.1e-08	34.3	2.9	2.0	1	1	0	1	1	1	1	Prephenate	dehydrogenase
Gp_dh_N	PF00044.19	gi|385804794|ref|YP_005841194.1|	-	3.7e-05	23.7	0.2	0.00093	19.1	0.0	2.1	2	0	0	2	2	2	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.13	gi|385804794|ref|YP_005841194.1|	-	0.00017	21.3	0.2	0.00017	21.3	0.2	1.8	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Shikimate_DH	PF01488.15	gi|385804794|ref|YP_005841194.1|	-	0.00035	20.6	0.3	0.00067	19.7	0.2	1.5	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
ApbA	PF02558.11	gi|385804794|ref|YP_005841194.1|	-	0.00068	19.1	0.0	0.0011	18.4	0.0	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
F420_oxidored	PF03807.12	gi|385804794|ref|YP_005841194.1|	-	0.0021	18.4	1.9	0.0057	17.0	0.2	2.3	2	1	1	3	3	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
TrkA_N	PF02254.13	gi|385804794|ref|YP_005841194.1|	-	0.0022	17.9	0.1	0.0077	16.2	0.1	2.1	1	1	0	1	1	1	1	TrkA-N	domain
NAD_binding_7	PF13241.1	gi|385804794|ref|YP_005841194.1|	-	0.0085	16.3	1.1	0.015	15.5	0.2	1.8	2	0	0	2	2	2	1	Putative	NAD(P)-binding
Saccharop_dh	PF03435.13	gi|385804794|ref|YP_005841194.1|	-	0.014	14.4	0.1	0.024	13.6	0.1	1.4	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
NAD_binding_2	PF03446.10	gi|385804794|ref|YP_005841194.1|	-	0.073	12.9	0.8	0.26	11.1	0.1	2.1	2	0	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
ThiF	PF00899.16	gi|385804794|ref|YP_005841194.1|	-	0.076	12.8	1.2	0.27	11.0	0.8	2.1	1	1	0	1	1	1	0	ThiF	family
DapB_N	PF01113.15	gi|385804794|ref|YP_005841194.1|	-	0.078	12.9	0.6	0.17	11.7	0.1	1.9	2	1	0	2	2	2	0	Dihydrodipicolinate	reductase,	N-terminus
GFO_IDH_MocA	PF01408.17	gi|385804794|ref|YP_005841194.1|	-	0.24	11.9	2.2	0.81	10.2	0.9	2.5	1	1	1	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Peptidase_M24	PF00557.19	gi|385804795|ref|YP_005841195.1|	-	9.2e-39	133.1	0.5	1.2e-38	132.7	0.3	1.2	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.13	gi|385804795|ref|YP_005841195.1|	-	1.3e-06	28.8	1.1	3.3e-06	27.6	0.1	2.0	1	1	1	2	2	2	1	Creatinase/Prolidase	N-terminal	domain
HTH_24	PF13412.1	gi|385804796|ref|YP_005841196.1|	-	1.4e-13	50.0	0.1	2.6e-13	49.1	0.0	1.5	2	0	0	2	2	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.16	gi|385804796|ref|YP_005841196.1|	-	3.1e-09	36.3	0.0	5.8e-09	35.5	0.0	1.4	1	0	0	1	1	1	1	AsnC	family
HTH_AsnC-type	PF13404.1	gi|385804796|ref|YP_005841196.1|	-	1.5e-08	34.0	0.0	3.2e-08	32.9	0.0	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.2	gi|385804796|ref|YP_005841196.1|	-	4.2e-07	29.5	0.1	8.5e-06	25.3	0.0	2.5	3	0	0	3	3	3	1	MarR	family
HTH_20	PF12840.2	gi|385804796|ref|YP_005841196.1|	-	6e-07	29.1	0.0	1.5e-06	27.8	0.0	1.6	2	0	0	2	2	1	1	Helix-turn-helix	domain
MarR	PF01047.17	gi|385804796|ref|YP_005841196.1|	-	6.1e-07	29.0	0.0	3.5e-06	26.6	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.5	gi|385804796|ref|YP_005841196.1|	-	1.4e-06	27.7	0.0	2.6e-06	26.9	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|385804796|ref|YP_005841196.1|	-	2.8e-06	27.1	0.0	8.7e-06	25.5	0.0	1.9	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_11	PF08279.7	gi|385804796|ref|YP_005841196.1|	-	3.8e-06	26.4	0.0	8.5e-06	25.3	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_23	PF13384.1	gi|385804796|ref|YP_005841196.1|	-	1.7e-05	24.3	0.0	2.9e-05	23.5	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_5	PF01022.15	gi|385804796|ref|YP_005841196.1|	-	3.1e-05	23.5	0.0	5.7e-05	22.6	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_28	PF13518.1	gi|385804796|ref|YP_005841196.1|	-	3.9e-05	23.5	0.0	6.9e-05	22.7	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|385804796|ref|YP_005841196.1|	-	5.1e-05	22.7	0.0	9.8e-05	21.8	0.0	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_36	PF13730.1	gi|385804796|ref|YP_005841196.1|	-	0.00017	21.6	0.0	0.0003	20.8	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|385804796|ref|YP_005841196.1|	-	0.0003	20.4	0.3	0.00058	19.5	0.0	1.6	2	0	0	2	2	1	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.15	gi|385804796|ref|YP_005841196.1|	-	0.00049	20.1	0.0	0.0018	18.3	0.0	1.8	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_6	PF01418.12	gi|385804796|ref|YP_005841196.1|	-	0.00055	19.6	0.0	0.0011	18.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain,	rpiR	family
HTH_10	PF04967.7	gi|385804796|ref|YP_005841196.1|	-	0.00073	19.0	0.1	0.0014	18.1	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_29	PF13551.1	gi|385804796|ref|YP_005841196.1|	-	0.0009	19.3	0.0	0.0011	19.0	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_27	PF13463.1	gi|385804796|ref|YP_005841196.1|	-	0.001	19.3	0.0	0.0017	18.6	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MerR	PF00376.18	gi|385804796|ref|YP_005841196.1|	-	0.003	17.0	0.4	0.098	12.2	0.0	2.5	2	0	0	2	2	2	1	MerR	family	regulatory	protein
LacI	PF00356.16	gi|385804796|ref|YP_005841196.1|	-	0.0038	16.8	0.0	0.0094	15.5	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	lacI	family
Sigma70_r4_2	PF08281.7	gi|385804796|ref|YP_005841196.1|	-	0.0041	16.5	0.1	0.0078	15.6	0.1	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
TetR_N	PF00440.18	gi|385804796|ref|YP_005841196.1|	-	0.011	15.2	0.0	0.02	14.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
HTH_45	PF14947.1	gi|385804796|ref|YP_005841196.1|	-	0.016	15.0	0.0	0.026	14.3	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
TFIIE_alpha	PF02002.12	gi|385804796|ref|YP_005841196.1|	-	0.021	14.3	0.1	0.028	13.8	0.1	1.3	1	0	0	1	1	1	0	TFIIE	alpha	subunit
EAP30	PF04157.11	gi|385804796|ref|YP_005841196.1|	-	0.029	13.5	0.0	0.041	13.0	0.0	1.2	1	0	0	1	1	1	0	EAP30/Vps36	family
FeoC	PF09012.5	gi|385804796|ref|YP_005841196.1|	-	0.031	13.9	0.0	0.046	13.4	0.0	1.2	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
GntR	PF00392.16	gi|385804796|ref|YP_005841196.1|	-	0.031	13.6	0.0	0.086	12.2	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_38	PF13936.1	gi|385804796|ref|YP_005841196.1|	-	0.034	13.7	0.0	0.061	12.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
FaeA	PF04703.7	gi|385804796|ref|YP_005841196.1|	-	0.049	13.7	0.0	0.084	13.0	0.0	1.3	1	0	0	1	1	1	0	FaeA-like	protein
DUF2250	PF10007.4	gi|385804796|ref|YP_005841196.1|	-	0.053	13.4	0.0	0.09	12.6	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_3	PF01381.17	gi|385804796|ref|YP_005841196.1|	-	0.062	13.1	0.0	0.13	12.0	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix
HTH_1	PF00126.22	gi|385804796|ref|YP_005841196.1|	-	0.066	12.9	0.1	0.27	11.0	0.0	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_30	PF13556.1	gi|385804796|ref|YP_005841196.1|	-	0.068	12.7	0.0	0.12	11.9	0.0	1.5	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
HTH_Tnp_1	PF01527.15	gi|385804796|ref|YP_005841196.1|	-	0.071	13.0	0.0	0.1	12.5	0.0	1.4	1	0	0	1	1	1	0	Transposase
HTH_34	PF13601.1	gi|385804796|ref|YP_005841196.1|	-	0.071	13.1	0.0	0.13	12.3	0.0	1.5	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_17	PF12728.2	gi|385804796|ref|YP_005841196.1|	-	0.072	13.3	0.0	0.12	12.6	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|385804796|ref|YP_005841196.1|	-	0.089	12.5	0.0	0.42	10.4	0.0	1.9	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
Methyltransf_14	PF08484.6	gi|385804796|ref|YP_005841196.1|	-	0.091	12.3	0.0	0.12	11.9	0.0	1.2	1	0	0	1	1	1	0	C-methyltransferase	C-terminal	domain
DUF2913	PF11140.3	gi|385804796|ref|YP_005841196.1|	-	0.11	11.7	0.0	0.18	11.0	0.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2913)
Phage_NinH	PF06322.6	gi|385804796|ref|YP_005841196.1|	-	0.13	11.8	0.2	0.28	10.8	0.0	1.6	2	0	0	2	2	1	0	Phage	NinH	protein
TPP_enzyme_C	PF02775.16	gi|385804797|ref|YP_005841197.1|	-	4.8e-31	107.4	0.2	6.8e-31	106.9	0.1	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
POR	PF01558.13	gi|385804798|ref|YP_005841198.1|	-	2.8e-53	180.3	0.0	5.1e-53	179.5	0.0	1.4	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
POR_N	PF01855.14	gi|385804798|ref|YP_005841198.1|	-	1.6e-49	168.5	0.1	3.9e-49	167.2	0.1	1.6	1	1	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
TPP_enzyme_N	PF02776.13	gi|385804798|ref|YP_005841198.1|	-	3e-06	26.8	0.1	6.2e-06	25.8	0.1	1.5	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Chorismate_synt	PF01264.16	gi|385804799|ref|YP_005841199.1|	-	5.2e-127	423.0	0.0	6e-127	422.8	0.0	1.0	1	0	0	1	1	1	1	Chorismate	synthase
EPSP_synthase	PF00275.15	gi|385804800|ref|YP_005841200.1|	-	1.6e-102	343.0	0.6	1.9e-102	342.8	0.4	1.0	1	0	0	1	1	1	1	EPSP	synthase	(3-phosphoshikimate	1-carboxyvinyltransferase)
SLA_LP_auto_ag	PF05889.8	gi|385804800|ref|YP_005841200.1|	-	0.077	11.4	0.0	0.12	10.8	0.0	1.2	1	0	0	1	1	1	0	Soluble	liver	antigen/liver	pancreas	antigen	(SLA/LP	autoantigen)
IMS	PF00817.15	gi|385804801|ref|YP_005841201.1|	-	2e-36	125.0	0.0	4e-36	124.0	0.0	1.5	1	0	0	1	1	1	1	impB/mucB/samB	family
IMS_C	PF11799.3	gi|385804801|ref|YP_005841201.1|	-	5.1e-14	52.2	0.0	1.2e-13	51.0	0.0	1.6	1	0	0	1	1	1	1	impB/mucB/samB	family	C-terminal	domain
IMS_HHH	PF11798.3	gi|385804801|ref|YP_005841201.1|	-	4.2e-07	29.6	0.0	8.4e-07	28.6	0.0	1.6	1	0	0	1	1	1	1	IMS	family	HHH	motif
HHH_5	PF14520.1	gi|385804801|ref|YP_005841201.1|	-	8e-05	22.7	0.0	0.00021	21.3	0.0	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
DNA_pol_lambd_f	PF10391.4	gi|385804801|ref|YP_005841201.1|	-	0.00025	20.5	0.0	0.00051	19.5	0.0	1.5	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
TIM	PF00121.13	gi|385804802|ref|YP_005841202.1|	-	1.1e-22	80.2	0.1	2.6e-20	72.5	0.1	2.0	1	1	0	1	1	1	1	Triosephosphate	isomerase
ThiG	PF05690.9	gi|385804802|ref|YP_005841202.1|	-	0.0019	17.3	0.9	0.0019	17.3	0.6	1.8	2	1	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
FMN_dh	PF01070.13	gi|385804802|ref|YP_005841202.1|	-	0.011	14.5	2.1	0.017	13.9	1.4	1.5	1	1	0	1	1	1	0	FMN-dependent	dehydrogenase
Hydrolase_like	PF13242.1	gi|385804802|ref|YP_005841202.1|	-	0.021	14.5	0.9	0.038	13.7	0.1	1.9	2	0	0	2	2	2	0	HAD-hyrolase-like
Pax2_C	PF12403.3	gi|385804802|ref|YP_005841202.1|	-	0.077	12.6	0.0	0.15	11.7	0.0	1.5	1	0	0	1	1	1	0	Paired-box	protein	2	C	terminal
HTH_3	PF01381.17	gi|385804803|ref|YP_005841203.1|	-	8.7e-09	35.1	0.8	1.4e-08	34.4	0.6	1.3	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.1	gi|385804803|ref|YP_005841203.1|	-	7e-08	32.5	0.5	1.1e-07	31.8	0.3	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.2	gi|385804803|ref|YP_005841203.1|	-	1.2e-06	28.4	0.4	2.7e-06	27.3	0.3	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.1	gi|385804803|ref|YP_005841203.1|	-	5.2e-05	22.7	1.9	8e-05	22.2	1.3	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
RAP1	PF07218.6	gi|385804803|ref|YP_005841203.1|	-	0.35	8.9	5.0	0.34	8.9	3.5	1.1	1	0	0	1	1	1	0	Rhoptry-associated	protein	1	(RAP-1)
SSP160	PF06933.6	gi|385804803|ref|YP_005841203.1|	-	2.4	6.0	10.8	3.1	5.6	7.5	1.1	1	0	0	1	1	1	0	Special	lobe-specific	silk	protein	SSP160
CDP-OH_P_transf	PF01066.16	gi|385804804|ref|YP_005841204.1|	-	5.5e-12	45.8	11.2	2.8e-11	43.5	7.8	2.1	1	1	0	1	1	1	1	CDP-alcohol	phosphatidyltransferase
AAA_18	PF13238.1	gi|385804805|ref|YP_005841205.1|	-	2.1e-17	63.6	0.0	3.5e-17	62.9	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|385804805|ref|YP_005841205.1|	-	9.5e-09	36.1	0.1	1.6e-08	35.3	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|385804805|ref|YP_005841205.1|	-	0.00071	19.2	0.2	0.0019	17.8	0.1	1.8	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_22	PF13401.1	gi|385804805|ref|YP_005841205.1|	-	0.0068	16.5	0.3	0.012	15.7	0.2	1.6	1	1	0	1	1	1	1	AAA	domain
SKI	PF01202.17	gi|385804805|ref|YP_005841205.1|	-	0.014	15.2	0.1	0.046	13.5	0.0	1.7	2	0	0	2	2	2	0	Shikimate	kinase
CPT	PF07931.7	gi|385804805|ref|YP_005841205.1|	-	0.018	14.6	0.7	0.024	14.2	0.5	1.5	1	1	0	1	1	1	0	Chloramphenicol	phosphotransferase-like	protein
AAA_33	PF13671.1	gi|385804805|ref|YP_005841205.1|	-	0.02	14.7	1.2	0.29	10.9	0.8	2.6	1	1	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.10	gi|385804805|ref|YP_005841205.1|	-	0.028	14.1	0.2	0.087	12.5	0.0	1.9	2	0	0	2	2	2	0	NTPase
AAA_30	PF13604.1	gi|385804805|ref|YP_005841205.1|	-	0.056	13.0	0.0	0.099	12.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.1	gi|385804805|ref|YP_005841205.1|	-	0.072	13.0	4.4	0.1	12.5	2.2	2.0	1	1	1	2	2	2	0	AAA	domain
FlpD	PF02662.11	gi|385804805|ref|YP_005841205.1|	-	0.11	12.1	0.0	0.18	11.5	0.0	1.3	1	0	0	1	1	1	0	Methyl-viologen-reducing	hydrogenase,	delta	subunit
AAA	PF00004.24	gi|385804805|ref|YP_005841205.1|	-	0.29	11.3	2.2	1.2	9.3	0.9	2.0	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Aminotran_1_2	PF00155.16	gi|385804806|ref|YP_005841206.1|	-	8e-61	205.9	0.0	9.1e-61	205.8	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DUF3798	PF12683.2	gi|385804806|ref|YP_005841206.1|	-	0.0064	15.6	0.0	0.0097	15.0	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3798)
Alliinase_C	PF04864.8	gi|385804806|ref|YP_005841206.1|	-	0.011	14.4	0.0	0.019	13.6	0.0	1.4	1	0	0	1	1	1	0	Allinase
Cys_Met_Meta_PP	PF01053.15	gi|385804806|ref|YP_005841206.1|	-	0.018	13.3	0.0	0.041	12.1	0.0	1.5	2	0	0	2	2	2	0	Cys/Met	metabolism	PLP-dependent	enzyme
FTR	PF01913.13	gi|385804806|ref|YP_005841206.1|	-	0.041	13.6	0.1	0.098	12.3	0.1	1.6	1	0	0	1	1	1	0	Formylmethanofuran-tetrahydromethanopterin	formyltransferase
Vif	PF00559.12	gi|385804806|ref|YP_005841206.1|	-	0.063	13.1	0.3	0.36	10.6	0.0	1.9	2	0	0	2	2	2	0	Retroviral	Vif	(Viral	infectivity)	protein
GMC_oxred_C	PF05199.8	gi|385804807|ref|YP_005841207.1|	-	3.4e-25	89.0	0.6	1e-24	87.4	0.4	1.9	1	1	0	1	1	1	1	GMC	oxidoreductase
GMC_oxred_N	PF00732.14	gi|385804807|ref|YP_005841207.1|	-	7.9e-15	54.7	0.0	1.4e-14	53.9	0.0	1.4	1	0	0	1	1	1	1	GMC	oxidoreductase
DAO	PF01266.19	gi|385804807|ref|YP_005841207.1|	-	2.1e-10	40.0	0.5	1.1e-06	27.8	0.0	2.7	3	1	0	3	3	3	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|385804807|ref|YP_005841207.1|	-	3.7e-09	35.9	0.2	0.00064	18.6	0.0	2.3	2	0	0	2	2	2	2	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|385804807|ref|YP_005841207.1|	-	1.1e-06	28.6	0.0	3.7e-06	26.8	0.0	2.0	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Lycopene_cycl	PF05834.7	gi|385804807|ref|YP_005841207.1|	-	6e-06	25.4	0.1	9.5e-06	24.7	0.0	1.3	1	0	0	1	1	1	1	Lycopene	cyclase	protein
Thi4	PF01946.12	gi|385804807|ref|YP_005841207.1|	-	8.4e-06	25.0	0.0	1.8e-05	23.9	0.0	1.5	1	0	0	1	1	1	1	Thi4	family
Pyr_redox_2	PF07992.9	gi|385804807|ref|YP_005841207.1|	-	2.5e-05	24.2	0.0	0.0028	17.5	0.0	2.8	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|385804807|ref|YP_005841207.1|	-	0.00023	20.3	0.2	0.00072	18.7	0.0	1.8	2	0	0	2	2	2	1	FAD	binding	domain
HI0933_like	PF03486.9	gi|385804807|ref|YP_005841207.1|	-	0.00065	18.2	0.3	0.0017	16.8	0.0	1.7	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox_3	PF13738.1	gi|385804807|ref|YP_005841207.1|	-	0.007	16.4	0.0	0.021	14.8	0.0	1.8	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Fer4_7	PF12838.2	gi|385804807|ref|YP_005841207.1|	-	0.01	16.2	0.7	0.031	14.6	0.5	1.8	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
3HCDH_N	PF02737.13	gi|385804807|ref|YP_005841207.1|	-	0.021	14.4	0.0	0.041	13.5	0.0	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
GIDA	PF01134.17	gi|385804807|ref|YP_005841207.1|	-	0.022	13.6	0.1	0.38	9.5	0.0	2.1	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
ApbA	PF02558.11	gi|385804807|ref|YP_005841207.1|	-	0.024	14.0	0.0	0.068	12.6	0.0	1.8	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
NAD_binding_9	PF13454.1	gi|385804807|ref|YP_005841207.1|	-	0.028	14.1	0.0	0.072	12.8	0.0	1.7	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Shikimate_DH	PF01488.15	gi|385804807|ref|YP_005841207.1|	-	0.037	14.1	0.0	0.063	13.3	0.0	1.3	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
Gluconate_2-dh3	PF13618.1	gi|385804808|ref|YP_005841208.1|	-	8.1e-12	45.4	0.0	1.1e-11	44.9	0.0	1.2	1	0	0	1	1	1	1	Gluconate	2-dehydrogenase	subunit	3
TAT_signal	PF10518.4	gi|385804808|ref|YP_005841208.1|	-	0.0052	16.6	0.5	0.015	15.2	0.3	1.8	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.4	gi|385804808|ref|YP_005841208.1|	-	0.076	12.2	0.3	0.076	12.2	0.2	2.1	3	0	0	3	3	3	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
FAA_hydrolase	PF01557.13	gi|385804809|ref|YP_005841209.1|	-	3.2e-64	216.3	0.1	4e-64	216.0	0.1	1.1	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
Lactamase_B_3	PF13483.1	gi|385804810|ref|YP_005841210.1|	-	1.6e-23	83.1	1.5	2.1e-23	82.8	1.0	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.2	gi|385804810|ref|YP_005841210.1|	-	1.7e-17	63.6	1.1	2.1e-17	63.3	0.8	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|385804810|ref|YP_005841210.1|	-	2.4e-11	43.6	9.2	5.8e-11	42.4	6.2	2.0	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Hydrolase_6	PF13344.1	gi|385804811|ref|YP_005841211.1|	-	2.8e-22	78.5	0.0	5.3e-22	77.6	0.0	1.5	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|385804811|ref|YP_005841211.1|	-	2.2e-18	65.7	0.0	4.5e-18	64.7	0.0	1.5	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD_2	PF13419.1	gi|385804811|ref|YP_005841211.1|	-	4.7e-07	30.2	0.2	8e-05	22.9	0.0	2.7	2	1	1	3	3	3	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|385804811|ref|YP_005841211.1|	-	3e-06	27.8	1.5	3.7e-05	24.2	1.1	2.5	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
PGP_phosphatase	PF09419.5	gi|385804811|ref|YP_005841211.1|	-	0.00037	19.8	0.1	0.001	18.4	0.1	1.8	1	0	0	1	1	1	1	Mitochondrial	PGP	phosphatase
zf-TFIIB	PF13453.1	gi|385804812|ref|YP_005841212.1|	-	0.00073	18.6	10.3	0.014	14.6	1.6	3.1	2	1	1	3	3	3	1	Transcription	factor	zinc-finger
zf-CHY	PF05495.7	gi|385804812|ref|YP_005841212.1|	-	0.12	12.5	4.0	0.36	11.0	0.9	2.1	1	1	1	2	2	2	0	CHY	zinc	finger
zf-RING_3	PF14369.1	gi|385804812|ref|YP_005841212.1|	-	0.12	12.3	11.1	0.36	10.8	0.1	4.0	3	1	1	4	4	4	0	zinc-finger
Stc1	PF12898.2	gi|385804812|ref|YP_005841212.1|	-	0.17	11.9	2.1	0.17	11.9	0.2	1.8	1	1	1	2	2	2	0	Stc1	domain
HypA	PF01155.14	gi|385804812|ref|YP_005841212.1|	-	0.17	11.5	6.7	1	9.1	1.5	2.8	1	1	1	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
DZR	PF12773.2	gi|385804812|ref|YP_005841212.1|	-	0.19	11.5	7.6	8.6	6.2	5.5	2.8	1	1	1	2	2	2	0	Double	zinc	ribbon
RPA_interact_C	PF14768.1	gi|385804812|ref|YP_005841212.1|	-	0.26	11.6	6.4	0.84	10.0	0.1	2.8	2	1	1	3	3	3	0	Replication	protein	A	interacting	C-terminal
zinc-ribbons_6	PF07191.7	gi|385804812|ref|YP_005841212.1|	-	0.29	10.9	7.8	2.2	8.1	2.8	2.6	1	1	1	2	2	2	0	zinc-ribbons
zf-C3HC4_3	PF13920.1	gi|385804812|ref|YP_005841212.1|	-	0.55	9.9	9.1	20	4.9	3.8	3.0	2	1	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
Opy2	PF09463.5	gi|385804812|ref|YP_005841212.1|	-	0.63	10.1	10.6	7.1	6.8	0.2	3.9	4	0	0	4	4	4	0	Opy2	protein
OrfB_Zn_ribbon	PF07282.6	gi|385804812|ref|YP_005841212.1|	-	0.67	9.6	9.2	0.14	11.8	0.7	2.6	1	1	2	3	3	3	0	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1	PF03811.8	gi|385804812|ref|YP_005841212.1|	-	0.75	9.3	15.6	0.58	9.6	0.2	3.8	4	0	0	4	4	4	0	InsA	N-terminal	domain
zf-Di19	PF05605.7	gi|385804812|ref|YP_005841212.1|	-	0.8	9.8	6.0	23	5.2	1.4	3.3	2	1	0	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C4_Topoisom	PF01396.14	gi|385804812|ref|YP_005841212.1|	-	0.91	9.0	7.1	13	5.3	0.0	3.5	4	0	0	4	4	4	0	Topoisomerase	DNA	binding	C4	zinc	finger
Mu-like_Com	PF10122.4	gi|385804812|ref|YP_005841212.1|	-	1	8.5	5.9	17	4.5	0.2	3.1	2	1	1	3	3	3	0	Mu-like	prophage	protein	Com
DUF2387	PF09526.5	gi|385804812|ref|YP_005841212.1|	-	1.2	9.1	8.9	5	7.1	0.2	2.5	2	1	0	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
zinc_ribbon_5	PF13719.1	gi|385804812|ref|YP_005841212.1|	-	1.2	8.7	13.5	2.9	7.5	1.9	3.8	3	1	0	3	3	3	0	zinc-ribbon	domain
IBR	PF01485.16	gi|385804812|ref|YP_005841212.1|	-	2.8	7.8	8.5	3.6e+02	1.1	5.9	2.7	1	1	0	1	1	1	0	IBR	domain
zinc_ribbon_4	PF13717.1	gi|385804812|ref|YP_005841212.1|	-	3.9	7.2	14.4	3.3	7.4	2.1	3.8	3	1	0	3	3	3	0	zinc-ribbon	domain
TerY-C	PF15616.1	gi|385804812|ref|YP_005841212.1|	-	5.6	6.9	6.6	22	5.0	1.9	2.9	1	1	1	2	2	2	0	TerY-C	metal	binding	domain
YdjO	PF14169.1	gi|385804812|ref|YP_005841212.1|	-	9.5	5.7	7.8	1.7	8.1	0.2	2.8	1	1	2	3	3	3	0	Cold-inducible	protein	YdjO
zf-ribbon_3	PF13248.1	gi|385804812|ref|YP_005841212.1|	-	9.7	5.5	7.3	18	4.7	0.0	3.6	4	0	0	4	4	4	0	zinc-ribbon	domain
dCMP_cyt_deam_1	PF00383.17	gi|385804813|ref|YP_005841213.1|	-	1e-14	54.0	0.0	1.3e-14	53.6	0.0	1.1	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
MafB19-deam	PF14437.1	gi|385804813|ref|YP_005841213.1|	-	0.0072	15.9	0.0	0.0093	15.6	0.0	1.2	1	0	0	1	1	1	1	MafB19-like	deaminase
XOO_2897-deam	PF14440.1	gi|385804813|ref|YP_005841213.1|	-	0.077	12.7	0.1	0.099	12.3	0.0	1.2	1	0	0	1	1	1	0	Xanthomonas	XOO_2897-like	deaminase
Bd3614-deam	PF14439.1	gi|385804813|ref|YP_005841213.1|	-	0.15	11.9	0.4	0.28	11.0	0.2	1.5	1	1	0	1	1	1	0	Bd3614-like	deaminase
LTD	PF00932.14	gi|385804814|ref|YP_005841214.1|	-	1.2e-21	76.8	3.1	1.2e-21	76.8	2.2	2.3	3	0	0	3	3	3	1	Lamin	Tail	Domain
SNase	PF00565.12	gi|385804814|ref|YP_005841214.1|	-	3.4e-18	65.8	0.0	5.3e-18	65.2	0.0	1.3	1	0	0	1	1	1	1	Staphylococcal	nuclease	homologue
DUF4249	PF14054.1	gi|385804814|ref|YP_005841214.1|	-	0.0034	16.7	0.4	0.0034	16.7	0.3	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4249)
OrfB_IS605	PF01385.14	gi|385804817|ref|YP_005841217.1|	-	7.3e-60	202.1	2.5	9.6e-60	201.8	1.8	1.1	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|385804817|ref|YP_005841217.1|	-	2.2e-13	49.6	2.3	7.7e-13	47.8	1.6	2.0	1	1	0	1	1	1	1	Putative	transposase	DNA-binding	domain
BPD_transp_1	PF00528.17	gi|385804818|ref|YP_005841218.1|	-	1.7e-14	53.7	21.6	1.7e-14	53.7	15.0	2.4	1	1	2	3	3	3	2	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|385804819|ref|YP_005841219.1|	-	1.7e-08	34.2	26.1	2.5e-07	30.3	18.1	2.3	1	1	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
FliP	PF00813.15	gi|385804819|ref|YP_005841219.1|	-	1	9.0	10.0	0.12	12.0	0.8	2.5	2	1	1	3	3	3	0	FliP	family
ABC_tran	PF00005.22	gi|385804820|ref|YP_005841220.1|	-	2.5e-35	121.7	0.0	4.5e-35	120.9	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385804820|ref|YP_005841220.1|	-	7e-12	45.8	0.0	6e-07	29.7	0.0	2.3	1	1	1	2	2	2	2	AAA	domain
TOBE_2	PF08402.5	gi|385804820|ref|YP_005841220.1|	-	1.5e-05	24.9	0.1	0.00084	19.2	0.0	3.3	2	1	1	3	3	3	1	TOBE	domain
SMC_N	PF02463.14	gi|385804820|ref|YP_005841220.1|	-	0.0002	20.6	0.1	0.021	14.0	0.0	2.2	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_17	PF13207.1	gi|385804820|ref|YP_005841220.1|	-	0.00034	21.4	0.0	0.00068	20.4	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|385804820|ref|YP_005841220.1|	-	0.00043	20.3	0.4	0.00098	19.1	0.3	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|385804820|ref|YP_005841220.1|	-	0.0011	19.1	0.2	0.0044	17.1	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|385804820|ref|YP_005841220.1|	-	0.0053	16.9	0.3	0.031	14.4	0.2	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_28	PF13521.1	gi|385804820|ref|YP_005841220.1|	-	0.0067	16.3	0.0	0.013	15.4	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_23	PF13476.1	gi|385804820|ref|YP_005841220.1|	-	0.016	15.5	0.1	0.035	14.4	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|385804820|ref|YP_005841220.1|	-	0.02	14.0	0.0	0.045	12.9	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_18	PF13238.1	gi|385804820|ref|YP_005841220.1|	-	0.021	15.1	0.0	0.056	13.7	0.0	1.8	2	0	0	2	2	1	0	AAA	domain
Rad17	PF03215.10	gi|385804820|ref|YP_005841220.1|	-	0.021	13.4	0.0	0.03	13.0	0.0	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
AAA_33	PF13671.1	gi|385804820|ref|YP_005841220.1|	-	0.031	14.1	0.0	0.07	13.0	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|385804820|ref|YP_005841220.1|	-	0.042	13.5	0.0	0.096	12.4	0.0	1.6	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_29	PF13555.1	gi|385804820|ref|YP_005841220.1|	-	0.054	13.0	0.0	0.15	11.6	0.0	1.7	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
DAP10	PF07213.6	gi|385804820|ref|YP_005841220.1|	-	0.062	13.0	0.0	1.9	8.3	0.0	2.3	2	0	0	2	2	2	0	DAP10	membrane	protein
Mg_chelatase	PF01078.16	gi|385804820|ref|YP_005841220.1|	-	0.075	12.1	0.0	0.25	10.4	0.0	1.8	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_15	PF13175.1	gi|385804820|ref|YP_005841220.1|	-	0.087	11.8	0.0	3.6	6.5	0.0	2.2	2	0	0	2	2	2	0	AAA	ATPase	domain
SBP_bac_8	PF13416.1	gi|385804821|ref|YP_005841221.1|	-	1.6e-16	60.9	0.0	2.1e-16	60.4	0.0	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.1	gi|385804821|ref|YP_005841221.1|	-	5.9e-11	42.1	0.1	6.9e-10	38.6	0.1	2.0	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|385804821|ref|YP_005841221.1|	-	7.5e-10	39.0	0.1	1.4e-09	38.1	0.1	1.3	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
Ribosomal_S10	PF00338.17	gi|385804822|ref|YP_005841222.1|	-	1.9e-28	98.1	0.0	2.1e-28	98.0	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
GTP_EFTU	PF00009.22	gi|385804823|ref|YP_005841223.1|	-	1.4e-57	194.1	0.0	1.9e-57	193.7	0.0	1.1	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.12	gi|385804823|ref|YP_005841223.1|	-	9e-31	105.9	0.1	3.5e-30	104.1	0.0	2.0	2	0	0	2	2	2	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.20	gi|385804823|ref|YP_005841223.1|	-	8.6e-18	64.2	4.2	4.5e-17	61.9	1.4	2.6	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.18	gi|385804823|ref|YP_005841223.1|	-	2e-07	30.9	0.0	3.9e-07	30.0	0.0	1.6	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
GTP_EFTU_D4	PF14578.1	gi|385804823|ref|YP_005841223.1|	-	1.6e-06	27.6	0.1	5.9e-06	25.8	0.1	1.9	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	4
Miro	PF08477.8	gi|385804823|ref|YP_005841223.1|	-	4.3e-05	23.9	0.0	0.0012	19.2	0.0	2.9	2	1	0	2	2	2	1	Miro-like	protein
Gtr1_RagA	PF04670.7	gi|385804823|ref|YP_005841223.1|	-	0.00073	18.7	0.0	0.074	12.1	0.0	2.2	2	0	0	2	2	2	1	Gtr1/RagA	G	protein	conserved	region
SRPRB	PF09439.5	gi|385804823|ref|YP_005841223.1|	-	0.018	14.2	0.0	0.5	9.5	0.0	2.2	1	1	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
Dynamin_N	PF00350.18	gi|385804823|ref|YP_005841223.1|	-	0.026	14.3	0.1	6.3	6.5	0.0	2.4	1	1	1	2	2	2	0	Dynamin	family
FeoB_N	PF02421.13	gi|385804823|ref|YP_005841223.1|	-	0.029	13.6	0.2	0.48	9.6	0.1	2.5	2	1	0	2	2	2	0	Ferrous	iron	transport	protein	B
Septin	PF00735.13	gi|385804823|ref|YP_005841223.1|	-	0.086	11.8	0.0	0.2	10.6	0.0	1.5	1	0	0	1	1	1	0	Septin
Hemolysin_N	PF12563.3	gi|385804823|ref|YP_005841223.1|	-	0.15	11.5	0.1	0.22	10.9	0.0	1.2	1	0	0	1	1	1	0	Hemolytic	toxin	N	terminal
Homoserine_dh	PF00742.14	gi|385804824|ref|YP_005841224.1|	-	1.7e-48	164.6	0.3	2.5e-48	164.0	0.2	1.3	1	0	0	1	1	1	1	Homoserine	dehydrogenase
ELFV_dehydrog	PF00208.16	gi|385804824|ref|YP_005841224.1|	-	1.2e-09	38.0	0.1	3.5e-09	36.6	0.1	1.7	2	0	0	2	2	2	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
NAD_binding_3	PF03447.11	gi|385804824|ref|YP_005841224.1|	-	0.00057	20.2	0.1	0.0013	19.1	0.1	1.6	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|385804824|ref|YP_005841224.1|	-	0.003	16.7	0.0	0.0057	15.8	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_10	PF13460.1	gi|385804824|ref|YP_005841224.1|	-	0.013	15.5	1.0	0.025	14.5	0.7	1.6	1	0	0	1	1	1	0	NADH(P)-binding
ApbA	PF02558.11	gi|385804824|ref|YP_005841224.1|	-	0.02	14.3	0.0	0.032	13.6	0.0	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
ACT	PF01842.20	gi|385804825|ref|YP_005841225.1|	-	0.00034	20.0	0.1	0.0022	17.4	0.0	2.4	1	1	1	2	2	2	1	ACT	domain
GTP_EFTU	PF00009.22	gi|385804826|ref|YP_005841226.1|	-	1.4e-60	204.0	0.6	2.3e-60	203.2	0.4	1.3	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
EFG_IV	PF03764.13	gi|385804826|ref|YP_005841226.1|	-	6e-23	80.6	0.0	2.2e-22	78.8	0.0	2.0	2	0	0	2	2	2	1	Elongation	factor	G,	domain	IV
EFG_II	PF14492.1	gi|385804826|ref|YP_005841226.1|	-	2.9e-22	78.2	0.4	2.9e-22	78.2	0.3	1.9	2	0	0	2	2	2	1	Elongation	Factor	G,	domain	II
EFG_C	PF00679.19	gi|385804826|ref|YP_005841226.1|	-	3.6e-22	78.0	0.3	5.7e-21	74.1	0.0	2.9	3	0	0	3	3	3	1	Elongation	factor	G	C-terminus
GTP_EFTU_D2	PF03144.20	gi|385804826|ref|YP_005841226.1|	-	7.1e-14	51.6	2.4	2.8e-13	49.7	0.8	2.9	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.18	gi|385804826|ref|YP_005841226.1|	-	2.5e-05	24.2	0.2	0.00014	21.8	0.0	2.4	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
SRPRB	PF09439.5	gi|385804826|ref|YP_005841226.1|	-	0.099	11.8	0.1	0.29	10.3	0.1	1.8	1	1	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
Rnk_N	PF14760.1	gi|385804827|ref|YP_005841227.1|	-	0.076	13.0	0.2	3.1	7.9	0.0	2.5	2	0	0	2	2	2	0	Rnk	N-terminus
DUF4157	PF13699.1	gi|385804827|ref|YP_005841227.1|	-	0.31	11.2	5.4	0.14	12.3	0.6	2.7	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4157)
Ribosomal_S7	PF00177.16	gi|385804828|ref|YP_005841228.1|	-	6.2e-35	119.9	1.1	7.7e-35	119.6	0.8	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S7p/S5e
Ribosom_S12_S23	PF00164.20	gi|385804829|ref|YP_005841229.1|	-	9.7e-41	138.0	0.1	1.1e-40	137.8	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S12/S23
KH_2	PF07650.12	gi|385804830|ref|YP_005841230.1|	-	2.1e-13	49.6	0.0	4.9e-08	32.4	0.0	2.1	1	1	1	2	2	2	2	KH	domain
KH_5	PF13184.1	gi|385804830|ref|YP_005841230.1|	-	1.7e-11	43.7	0.1	4.2e-11	42.4	0.0	1.7	2	0	0	2	2	2	1	NusA-like	KH	domain
KH_1	PF00013.24	gi|385804830|ref|YP_005841230.1|	-	3.2e-06	26.6	0.2	0.00046	19.7	0.0	2.3	1	1	1	2	2	2	2	KH	domain
KH_4	PF13083.1	gi|385804830|ref|YP_005841230.1|	-	0.00029	20.4	0.0	0.049	13.2	0.0	2.2	2	0	0	2	2	2	2	KH	domain
KH_3	PF13014.1	gi|385804830|ref|YP_005841230.1|	-	0.0044	16.6	0.1	0.23	11.1	0.0	2.9	2	2	1	3	3	3	1	KH	domain
RNA_pol_Rpb1_5	PF04998.12	gi|385804831|ref|YP_005841231.1|	-	8.7e-42	143.2	1.0	7.8e-33	113.9	0.1	2.2	2	0	0	2	2	2	2	RNA	polymerase	Rpb1,	domain	5
Spo0A_C	PF08769.6	gi|385804831|ref|YP_005841231.1|	-	0.041	13.7	0.1	0.18	11.7	0.0	2.0	2	0	0	2	2	2	0	Sporulation	initiation	factor	Spo0A	C	terminal
DUF4355	PF14265.1	gi|385804831|ref|YP_005841231.1|	-	0.081	12.8	0.7	1.1	9.2	0.0	2.6	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4355)
RNA_pol_Rpb1_1	PF04997.7	gi|385804832|ref|YP_005841232.1|	-	2.4e-87	293.3	0.0	3.4e-87	292.8	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	1
RNA_pol_Rpb1_2	PF00623.15	gi|385804832|ref|YP_005841232.1|	-	3.4e-65	219.0	0.1	5.5e-65	218.3	0.1	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	2
RNA_pol_Rpb1_4	PF05000.12	gi|385804832|ref|YP_005841232.1|	-	1.2e-32	111.8	0.0	2.5e-32	110.8	0.0	1.6	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	4
RNA_pol_Rpb1_5	PF04998.12	gi|385804832|ref|YP_005841232.1|	-	3.6e-29	101.9	0.0	6.2e-29	101.1	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
RNA_pol_Rpb1_3	PF04983.13	gi|385804832|ref|YP_005841232.1|	-	2.3e-27	95.6	0.0	4.1e-27	94.8	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	3
HTH_3	PF01381.17	gi|385804832|ref|YP_005841232.1|	-	0.0093	15.7	0.0	0.023	14.5	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix
Lar_restr_allev	PF14354.1	gi|385804832|ref|YP_005841232.1|	-	0.13	12.5	0.6	0.84	9.9	0.1	2.3	2	0	0	2	2	2	0	Restriction	alleviation	protein	Lar
RNA_pol_Rpb2_6	PF00562.23	gi|385804833|ref|YP_005841233.1|	-	1.1e-122	409.5	0.0	2.1e-122	408.5	0.0	1.4	2	0	0	2	2	2	1	RNA	polymerase	Rpb2,	domain	6
RNA_pol_Rpb2_4	PF04566.8	gi|385804833|ref|YP_005841233.1|	-	2.2e-26	91.4	1.6	1.4e-25	88.8	0.9	2.4	2	0	0	2	2	2	1	RNA	polymerase	Rpb2,	domain	4
RNA_pol_Rpb2_7	PF04560.15	gi|385804833|ref|YP_005841233.1|	-	5.9e-26	90.5	0.1	2e-25	88.8	0.0	1.9	2	0	0	2	2	2	1	RNA	polymerase	Rpb2,	domain	7
RNA_pol_Rpb2_5	PF04567.12	gi|385804833|ref|YP_005841233.1|	-	2.3e-12	46.6	3.5	6e-12	45.3	2.4	1.8	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	5
RNA_pol_Rpb2_1	PF04563.10	gi|385804834|ref|YP_005841234.1|	-	1.5e-53	180.7	0.0	1.9e-53	180.4	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	beta	subunit
RNA_pol_Rpb2_2	PF04561.9	gi|385804834|ref|YP_005841234.1|	-	4e-27	94.8	0.1	6e-27	94.2	0.1	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	2
RNA_pol_Rpb2_3	PF04565.11	gi|385804834|ref|YP_005841234.1|	-	4.5e-23	80.7	0.0	8.7e-23	79.8	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	3
RNA_pol_Rpb5_C	PF01191.14	gi|385804835|ref|YP_005841235.1|	-	9e-26	89.2	0.4	9.9e-26	89.1	0.3	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb5,	C-terminal	domain
DUF3006	PF11213.3	gi|385804835|ref|YP_005841235.1|	-	0.017	14.8	0.1	0.12	12.1	0.1	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3006)
RIO1	PF01163.17	gi|385804836|ref|YP_005841236.1|	-	4e-61	205.6	0.0	7.7e-61	204.7	0.0	1.4	1	0	0	1	1	1	1	RIO1	family
APH	PF01636.18	gi|385804836|ref|YP_005841236.1|	-	8.6e-08	32.1	0.2	2.8e-05	23.9	0.0	2.6	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Pkinase	PF00069.20	gi|385804836|ref|YP_005841236.1|	-	5.2e-06	25.7	0.0	1.7e-05	24.1	0.0	1.7	1	1	0	1	1	1	1	Protein	kinase	domain
Kdo	PF06293.9	gi|385804836|ref|YP_005841236.1|	-	1.1e-05	24.6	0.1	2.9e-05	23.2	0.1	1.6	1	1	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
WaaY	PF06176.6	gi|385804836|ref|YP_005841236.1|	-	0.022	13.9	0.0	0.033	13.3	0.0	1.2	1	0	0	1	1	1	0	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
ABC1	PF03109.11	gi|385804836|ref|YP_005841236.1|	-	0.1	12.6	0.3	7.3	6.5	0.0	3.2	3	0	0	3	3	3	0	ABC1	family
Apolipo_F	PF15148.1	gi|385804836|ref|YP_005841236.1|	-	0.13	11.5	0.0	0.19	10.9	0.0	1.2	1	0	0	1	1	1	0	Apolipoprotein	F
eIF-1a	PF01176.14	gi|385804837|ref|YP_005841237.1|	-	1.9e-28	97.6	0.4	2.6e-28	97.2	0.3	1.2	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
tRNA-synt_1b	PF00579.20	gi|385804838|ref|YP_005841238.1|	-	2.8e-43	148.1	0.0	3.4e-43	147.8	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
tRNA-synt_1f	PF01921.13	gi|385804838|ref|YP_005841238.1|	-	0.016	13.9	0.0	3.4	6.2	0.0	2.2	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(K)
tRNA-synt_1c	PF00749.16	gi|385804838|ref|YP_005841238.1|	-	0.033	12.8	0.3	3.4	6.2	0.0	2.2	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
PLDc_N	PF13396.1	gi|385804839|ref|YP_005841239.1|	-	1.9e-06	27.4	3.8	1.9e-06	27.4	2.7	2.0	2	1	0	2	2	2	1	Phospholipase_D-nuclease	N-terminal
7TMR-DISM_7TM	PF07695.6	gi|385804839|ref|YP_005841239.1|	-	0.042	13.5	6.8	0.059	13.0	4.7	1.2	1	0	0	1	1	1	0	7TM	diverse	intracellular	signalling
Herpes_LMP1	PF05297.6	gi|385804839|ref|YP_005841239.1|	-	0.33	9.8	5.9	0.42	9.4	4.1	1.0	1	0	0	1	1	1	0	Herpesvirus	latent	membrane	protein	1	(LMP1)
RseC_MucC	PF04246.7	gi|385804839|ref|YP_005841239.1|	-	9.1	5.8	6.6	3.1	7.3	0.1	2.1	1	1	1	2	2	2	0	Positive	regulator	of	sigma(E),	RseC/MucC
DUF460	PF04312.8	gi|385804840|ref|YP_005841240.1|	-	2.5e-48	163.0	1.1	2.2e-47	160.0	0.1	2.8	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF460)
GAS	PF13851.1	gi|385804840|ref|YP_005841240.1|	-	0.0033	16.6	17.8	0.0076	15.4	11.3	2.1	2	0	0	2	2	2	1	Growth-arrest	specific	micro-tubule	binding
APG6	PF04111.7	gi|385804840|ref|YP_005841240.1|	-	0.0061	15.6	14.8	0.02	13.9	10.3	1.9	1	0	0	1	1	1	1	Autophagy	protein	Apg6
BLOC1_2	PF10046.4	gi|385804840|ref|YP_005841240.1|	-	0.012	15.7	7.2	0.39	10.8	1.4	2.6	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
AAA_13	PF13166.1	gi|385804840|ref|YP_005841240.1|	-	0.019	13.4	9.0	0.03	12.8	6.2	1.2	1	0	0	1	1	1	0	AAA	domain
Nsp1_C	PF05064.8	gi|385804840|ref|YP_005841240.1|	-	0.06	12.9	9.4	0.11	12.1	0.6	2.8	1	1	1	2	2	2	0	Nsp1-like	C-terminal	region
Spc7	PF08317.6	gi|385804840|ref|YP_005841240.1|	-	0.06	11.9	16.0	0.089	11.4	10.0	1.9	1	1	1	2	2	2	0	Spc7	kinetochore	protein
Reo_sigmaC	PF04582.7	gi|385804840|ref|YP_005841240.1|	-	0.084	12.0	0.5	0.19	10.9	0.3	1.5	1	1	0	1	1	1	0	Reovirus	sigma	C	capsid	protein
V_ATPase_I	PF01496.14	gi|385804840|ref|YP_005841240.1|	-	0.13	10.0	9.7	0.26	9.0	6.7	1.4	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
SlyX	PF04102.7	gi|385804840|ref|YP_005841240.1|	-	0.2	12.0	7.5	1.4	9.3	0.8	3.1	1	1	2	3	3	3	0	SlyX
Laminin_II	PF06009.7	gi|385804840|ref|YP_005841240.1|	-	0.29	10.8	8.6	1.1	8.9	5.9	2.1	1	1	0	1	1	1	0	Laminin	Domain	II
TMF_DNA_bd	PF12329.3	gi|385804840|ref|YP_005841240.1|	-	0.47	10.3	24.6	0.22	11.3	9.4	3.0	2	1	1	3	3	3	0	TATA	element	modulatory	factor	1	DNA	binding
CENP-F_leu_zip	PF10473.4	gi|385804840|ref|YP_005841240.1|	-	0.52	10.1	29.3	0.029	14.2	14.8	2.6	2	1	0	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DivIC	PF04977.10	gi|385804840|ref|YP_005841240.1|	-	0.55	9.7	14.5	1.2	8.6	0.8	3.2	1	1	0	2	2	2	0	Septum	formation	initiator
DUF342	PF03961.8	gi|385804840|ref|YP_005841240.1|	-	0.93	7.8	7.9	1.8	6.8	5.5	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
PspB	PF06667.7	gi|385804840|ref|YP_005841240.1|	-	0.94	9.4	16.3	0.83	9.6	2.3	2.7	2	0	0	2	2	2	0	Phage	shock	protein	B
Prefoldin	PF02996.12	gi|385804840|ref|YP_005841240.1|	-	1.7	8.2	8.6	0.67	9.6	0.8	2.9	3	0	0	3	3	3	0	Prefoldin	subunit
FlaC_arch	PF05377.6	gi|385804840|ref|YP_005841240.1|	-	1.8	8.4	9.0	1.7	8.5	0.7	2.7	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
LMBR1	PF04791.11	gi|385804840|ref|YP_005841240.1|	-	2.5	6.5	2.4	3.5	6.1	1.7	1.2	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
DUF641	PF04859.7	gi|385804840|ref|YP_005841240.1|	-	2.6	7.8	17.9	0.031	14.0	2.5	3.1	2	1	1	3	3	3	0	Plant	protein	of	unknown	function	(DUF641)
DUF812	PF05667.6	gi|385804840|ref|YP_005841240.1|	-	2.7	6.3	23.4	1.2	7.5	12.7	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF812)
TBPIP	PF07106.8	gi|385804840|ref|YP_005841240.1|	-	5.1	6.6	15.1	11	5.4	1.4	2.4	1	1	1	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
Bacillus_HBL	PF05791.6	gi|385804840|ref|YP_005841240.1|	-	5.2	6.3	7.9	5.6	6.2	1.0	2.3	1	1	1	2	2	2	0	Bacillus	haemolytic	enterotoxin	(HBL)
Spc24	PF08286.6	gi|385804840|ref|YP_005841240.1|	-	6.8	6.4	14.6	7	6.3	4.5	2.8	1	1	1	2	2	2	0	Spc24	subunit	of	Ndc80
IncA	PF04156.9	gi|385804840|ref|YP_005841240.1|	-	7.5	6.0	24.7	0.088	12.3	11.1	2.2	2	0	0	2	2	2	0	IncA	protein
DUF3450	PF11932.3	gi|385804840|ref|YP_005841240.1|	-	9.3	5.4	16.7	0.83	8.8	3.1	2.9	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3450)
Lactamase_B_2	PF12706.2	gi|385804841|ref|YP_005841241.1|	-	5.4e-31	107.6	0.1	7.8e-31	107.1	0.0	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|385804841|ref|YP_005841241.1|	-	2.1e-17	63.4	1.0	7.5e-17	61.6	0.6	1.9	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_4	PF13691.1	gi|385804841|ref|YP_005841241.1|	-	0.0021	17.5	0.0	0.0039	16.6	0.0	1.4	1	0	0	1	1	1	1	tRNase	Z	endonuclease
DUF218	PF02698.12	gi|385804841|ref|YP_005841241.1|	-	0.08	12.4	0.4	0.14	11.6	0.3	1.2	1	0	0	1	1	1	0	DUF218	domain
AAA	PF00004.24	gi|385804843|ref|YP_005841243.1|	-	1.1e-10	41.7	0.0	5.6e-10	39.5	0.0	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DNA_pol3_delta2	PF13177.1	gi|385804843|ref|YP_005841243.1|	-	1.9e-10	40.6	0.0	3.6e-10	39.7	0.0	1.5	1	1	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
AAA_16	PF13191.1	gi|385804843|ref|YP_005841243.1|	-	3.6e-08	33.6	0.4	6.4e-06	26.2	0.0	3.0	1	1	1	2	2	2	1	AAA	ATPase	domain
Rep_fac_C	PF08542.6	gi|385804843|ref|YP_005841243.1|	-	4.7e-08	32.9	0.0	1.7e-07	31.0	0.0	2.0	2	0	0	2	2	2	1	Replication	factor	C	C-terminal	domain
AAA_22	PF13401.1	gi|385804843|ref|YP_005841243.1|	-	1.5e-06	28.3	0.0	8.1e-06	26.0	0.0	2.2	2	1	0	2	2	2	1	AAA	domain
AAA_14	PF13173.1	gi|385804843|ref|YP_005841243.1|	-	2e-06	27.7	0.0	0.0001	22.2	0.0	2.4	1	1	0	1	1	1	1	AAA	domain
AAA_24	PF13479.1	gi|385804843|ref|YP_005841243.1|	-	6.5e-05	22.6	0.0	0.00012	21.7	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
Sigma54_activat	PF00158.21	gi|385804843|ref|YP_005841243.1|	-	0.00031	20.2	0.0	0.0021	17.5	0.0	2.0	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_11	PF13086.1	gi|385804843|ref|YP_005841243.1|	-	0.0016	18.1	0.1	0.0037	16.8	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|385804843|ref|YP_005841243.1|	-	0.0048	16.6	0.0	0.012	15.3	0.0	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_30	PF13604.1	gi|385804843|ref|YP_005841243.1|	-	0.0054	16.3	0.5	0.075	12.6	0.0	2.5	2	1	0	2	2	2	1	AAA	domain
Sigma54_activ_2	PF14532.1	gi|385804843|ref|YP_005841243.1|	-	0.0064	16.5	0.0	0.54	10.2	0.0	2.3	2	0	0	2	2	2	1	Sigma-54	interaction	domain
RuvB_N	PF05496.7	gi|385804843|ref|YP_005841243.1|	-	0.0095	15.0	0.3	2.3	7.1	0.0	2.3	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
DUF2075	PF09848.4	gi|385804843|ref|YP_005841243.1|	-	0.011	14.6	0.0	0.015	14.2	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
IstB_IS21	PF01695.12	gi|385804843|ref|YP_005841243.1|	-	0.015	14.7	0.0	0.035	13.5	0.0	1.6	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
DNA_pol3_delta	PF06144.8	gi|385804843|ref|YP_005841243.1|	-	0.028	13.9	0.0	0.067	12.6	0.0	1.6	1	0	0	1	1	1	0	DNA	polymerase	III,	delta	subunit
NACHT	PF05729.7	gi|385804843|ref|YP_005841243.1|	-	0.028	14.0	0.0	0.11	12.1	0.0	2.0	2	1	0	2	2	1	0	NACHT	domain
Rad17	PF03215.10	gi|385804843|ref|YP_005841243.1|	-	0.029	13.0	0.0	3.4	6.2	0.0	2.2	2	0	0	2	2	2	0	Rad17	cell	cycle	checkpoint	protein
AAA_5	PF07728.9	gi|385804843|ref|YP_005841243.1|	-	0.042	13.5	0.0	0.21	11.3	0.0	2.0	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
TIP49	PF06068.8	gi|385804843|ref|YP_005841243.1|	-	0.05	12.3	0.0	4.9	5.7	0.0	2.1	2	0	0	2	2	2	0	TIP49	C-terminus
AAA_18	PF13238.1	gi|385804843|ref|YP_005841243.1|	-	0.058	13.7	0.0	0.16	12.3	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
Arch_ATPase	PF01637.13	gi|385804843|ref|YP_005841243.1|	-	0.069	12.8	0.0	0.12	12.0	0.0	1.4	1	0	0	1	1	1	0	Archaeal	ATPase
NTPase_1	PF03266.10	gi|385804843|ref|YP_005841243.1|	-	0.075	12.7	0.0	1.2	8.8	0.0	2.2	2	0	0	2	2	2	0	NTPase
ABC_tran	PF00005.22	gi|385804843|ref|YP_005841243.1|	-	0.085	13.1	0.0	0.17	12.2	0.0	1.9	1	1	0	1	1	1	0	ABC	transporter
AAA_3	PF07726.6	gi|385804843|ref|YP_005841243.1|	-	0.1	12.2	0.0	1.7	8.2	0.0	2.4	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
PS_Dcarbxylase	PF02666.10	gi|385804844|ref|YP_005841244.1|	-	4.9e-27	94.5	0.0	2.7e-24	85.5	0.0	2.1	1	1	0	1	1	1	1	Phosphatidylserine	decarboxylase
UPF0020	PF01170.13	gi|385804845|ref|YP_005841245.1|	-	1e-25	90.3	0.0	1.5e-25	89.8	0.0	1.2	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_26	PF13659.1	gi|385804845|ref|YP_005841245.1|	-	2.3e-11	43.7	0.0	6.6e-11	42.2	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.10	gi|385804845|ref|YP_005841245.1|	-	0.0013	18.1	0.0	0.0048	16.2	0.0	1.8	2	0	0	2	2	2	1	Conserved	hypothetical	protein	95
Methyltransf_25	PF13649.1	gi|385804845|ref|YP_005841245.1|	-	0.0043	17.3	0.0	0.012	15.9	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|385804845|ref|YP_005841245.1|	-	0.01	16.2	0.0	0.023	15.1	0.0	1.6	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|385804845|ref|YP_005841245.1|	-	0.015	15.8	0.1	0.038	14.5	0.0	1.7	2	0	0	2	2	2	0	Methyltransferase	domain
THUMP	PF02926.12	gi|385804845|ref|YP_005841245.1|	-	0.023	14.5	0.0	0.044	13.6	0.0	1.4	1	0	0	1	1	1	0	THUMP	domain
AviRa	PF11599.3	gi|385804845|ref|YP_005841245.1|	-	0.036	13.1	0.1	2.1	7.3	0.0	2.2	1	1	1	2	2	2	0	RRNA	methyltransferase	AviRa
TFIIB	PF00382.14	gi|385804846|ref|YP_005841246.1|	-	1.5e-31	107.9	4.4	2.1e-15	56.2	0.0	2.6	3	0	0	3	3	3	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|385804846|ref|YP_005841246.1|	-	8.4e-12	44.2	1.9	1.9e-11	43.1	1.3	1.6	1	0	0	1	1	1	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.11	gi|385804846|ref|YP_005841246.1|	-	0.00018	20.7	0.2	0.034	13.4	0.0	2.8	2	0	0	2	2	2	1	Sigma-70,	region	4
DZR	PF12773.2	gi|385804846|ref|YP_005841246.1|	-	0.056	13.2	0.3	0.13	12.0	0.2	1.6	1	0	0	1	1	1	0	Double	zinc	ribbon
Rubredoxin	PF00301.15	gi|385804846|ref|YP_005841246.1|	-	0.14	12.0	0.2	15	5.5	0.0	2.4	2	0	0	2	2	2	0	Rubredoxin
Zn-ribbon_8	PF09723.5	gi|385804846|ref|YP_005841246.1|	-	0.45	10.5	3.7	0.89	9.5	0.1	2.5	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.1	gi|385804846|ref|YP_005841246.1|	-	0.49	9.6	3.9	2.8	7.2	2.7	2.0	1	1	1	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.2	gi|385804847|ref|YP_005841247.1|	-	0.041	13.6	2.5	0.067	13.0	1.7	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
FYVE	PF01363.16	gi|385804847|ref|YP_005841247.1|	-	0.05	13.4	1.3	0.068	13.0	0.9	1.3	1	1	0	1	1	1	0	FYVE	zinc	finger
HypA	PF01155.14	gi|385804847|ref|YP_005841247.1|	-	0.1	12.3	2.7	0.16	11.7	1.8	1.5	1	1	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Zn-ribbon_8	PF09723.5	gi|385804847|ref|YP_005841247.1|	-	0.41	10.6	4.2	0.93	9.5	2.9	1.6	1	1	0	1	1	1	0	Zinc	ribbon	domain
TBP	PF00352.16	gi|385804848|ref|YP_005841248.1|	-	6.6e-64	211.2	0.0	1e-30	104.9	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.3	gi|385804848|ref|YP_005841248.1|	-	0.0059	16.6	0.0	0.49	10.4	0.0	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF3378)
CENP-F_C_Rb_bdg	PF10490.4	gi|385804848|ref|YP_005841248.1|	-	0.039	13.2	0.6	8.8	5.7	0.0	2.2	2	0	0	2	2	2	0	Rb-binding	domain	of	kinetochore	protein	Cenp-F/LEK1
DUF3773	PF12608.3	gi|385804848|ref|YP_005841248.1|	-	0.12	12.4	0.0	0.85	9.7	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3773)
TcpE	PF12648.2	gi|385804849|ref|YP_005841249.1|	-	0.83	9.8	8.1	5.7	7.1	0.4	2.1	2	0	0	2	2	2	0	TcpE	family
FixQ	PF05545.6	gi|385804849|ref|YP_005841249.1|	-	2.3	7.9	7.8	1.1	8.9	0.1	2.6	2	0	0	2	2	2	0	Cbb3-type	cytochrome	oxidase	component	FixQ
Chitin_synth_2	PF03142.10	gi|385804849|ref|YP_005841249.1|	-	2.9	6.1	6.6	3.1	6.0	4.5	1.0	1	0	0	1	1	1	0	Chitin	synthase
DAD	PF02109.11	gi|385804849|ref|YP_005841249.1|	-	3.1	7.8	6.2	13	5.9	3.7	2.3	1	1	1	2	2	2	0	DAD	family
DUF3753	PF12575.3	gi|385804849|ref|YP_005841249.1|	-	9.8	6.0	7.6	15	5.4	4.7	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3753)
HisG	PF01634.13	gi|385804850|ref|YP_005841250.1|	-	9.2e-48	161.8	0.1	1.4e-47	161.2	0.1	1.3	1	0	0	1	1	1	1	ATP	phosphoribosyltransferase
HisG_C	PF08029.6	gi|385804850|ref|YP_005841250.1|	-	1.1e-27	95.7	0.1	2e-27	94.9	0.1	1.5	1	0	0	1	1	1	1	HisG,	C-terminal	domain
Amidohydro_1	PF01979.15	gi|385804851|ref|YP_005841251.1|	-	2.6e-47	162.0	5.6	3.2e-47	161.7	3.9	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_4	PF13147.1	gi|385804851|ref|YP_005841251.1|	-	6.6e-16	59.1	16.3	1.1e-15	58.4	11.3	1.4	1	0	0	1	1	1	1	Amidohydrolase
Amidohydro_3	PF07969.6	gi|385804851|ref|YP_005841251.1|	-	5.2e-12	45.6	15.1	1.1e-10	41.3	6.1	2.2	1	1	0	2	2	2	2	Amidohydrolase	family
Amidohydro_5	PF13594.1	gi|385804851|ref|YP_005841251.1|	-	1.2e-10	40.9	0.4	6.5e-10	38.6	0.2	2.3	1	1	0	1	1	1	1	Amidohydrolase
A_deaminase	PF00962.17	gi|385804851|ref|YP_005841251.1|	-	0.00032	19.7	0.1	0.00063	18.7	0.0	1.5	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
SHS2_FTSA	PF02491.15	gi|385804851|ref|YP_005841251.1|	-	0.049	13.5	1.6	0.27	11.1	0.2	2.6	2	1	0	2	2	2	0	SHS2	domain	inserted	in	FTSA
AdoHcyase	PF05221.12	gi|385804852|ref|YP_005841252.1|	-	2e-49	167.9	0.2	2.4e-49	167.6	0.1	1.1	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase
AdoHcyase_NAD	PF00670.16	gi|385804852|ref|YP_005841252.1|	-	6.4e-49	165.9	0.8	1.1e-48	165.1	0.4	1.5	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|385804852|ref|YP_005841252.1|	-	6.6e-10	38.4	0.2	1.3e-09	37.5	0.1	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.7	gi|385804852|ref|YP_005841252.1|	-	1.7e-06	27.5	0.6	5.3e-06	25.8	0.1	2.0	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
TrkA_N	PF02254.13	gi|385804852|ref|YP_005841252.1|	-	0.0061	16.5	0.1	0.017	15.1	0.1	1.8	1	0	0	1	1	1	1	TrkA-N	domain
DUF3921	PF13060.1	gi|385804852|ref|YP_005841252.1|	-	0.03	14.2	0.1	0.071	13.0	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3921)
3HCDH_N	PF02737.13	gi|385804852|ref|YP_005841252.1|	-	0.041	13.5	0.2	0.089	12.4	0.2	1.6	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Sulfatase	PF00884.18	gi|385804853|ref|YP_005841253.1|	-	1.3e-35	123.0	0.1	2e-35	122.4	0.1	1.3	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.17	gi|385804853|ref|YP_005841253.1|	-	1e-07	31.6	0.1	0.0018	17.6	0.0	2.2	2	0	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
HAT	PF02184.11	gi|385804853|ref|YP_005841253.1|	-	0.082	12.6	0.1	0.28	10.9	0.0	1.9	2	0	0	2	2	2	0	HAT	(Half-A-TPR)	repeat
MgtE	PF01769.11	gi|385804854|ref|YP_005841254.1|	-	5.2e-19	68.8	11.9	5.2e-19	68.8	8.3	1.4	2	0	0	2	2	2	1	Divalent	cation	transporter
MgtE	PF01769.11	gi|385804855|ref|YP_005841255.1|	-	3.9e-17	62.7	10.8	3.9e-17	62.7	7.5	1.4	2	0	0	2	2	2	1	Divalent	cation	transporter
TMEM141	PF15110.1	gi|385804855|ref|YP_005841255.1|	-	0.17	12.1	0.8	0.37	11.1	0.5	1.6	1	1	0	1	1	1	0	TMEM141	protein	family
DUF3816	PF12822.2	gi|385804855|ref|YP_005841255.1|	-	0.55	10.0	14.9	1	9.2	10.3	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3816)
SRP54	PF00448.17	gi|385804856|ref|YP_005841256.1|	-	3e-62	209.5	0.1	5.8e-62	208.6	0.0	1.5	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP_SPB	PF02978.14	gi|385804856|ref|YP_005841256.1|	-	7.9e-30	103.1	3.6	7.9e-30	103.1	2.5	2.9	2	1	1	3	3	3	1	Signal	peptide	binding	domain
SRP54_N	PF02881.14	gi|385804856|ref|YP_005841256.1|	-	4.5e-16	58.7	0.6	1.2e-15	57.3	0.2	2.0	2	0	0	2	2	1	1	SRP54-type	protein,	helical	bundle	domain
Zeta_toxin	PF06414.7	gi|385804856|ref|YP_005841256.1|	-	0.0039	16.3	0.0	0.0089	15.1	0.0	1.6	1	0	0	1	1	1	1	Zeta	toxin
CbiA	PF01656.18	gi|385804856|ref|YP_005841256.1|	-	0.0051	16.2	0.3	0.039	13.3	0.2	2.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_10	PF12846.2	gi|385804856|ref|YP_005841256.1|	-	0.0065	15.9	0.2	0.0083	15.5	0.1	1.4	1	1	0	1	1	1	1	AAA-like	domain
MobB	PF03205.9	gi|385804856|ref|YP_005841256.1|	-	0.0099	15.5	0.0	0.024	14.3	0.0	1.7	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
cobW	PF02492.14	gi|385804856|ref|YP_005841256.1|	-	0.011	15.1	0.1	0.041	13.3	0.1	1.9	1	1	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
APS_kinase	PF01583.15	gi|385804856|ref|YP_005841256.1|	-	0.013	15.1	0.1	0.039	13.6	0.0	1.9	2	0	0	2	2	2	0	Adenylylsulphate	kinase
AAA_25	PF13481.1	gi|385804856|ref|YP_005841256.1|	-	0.018	14.4	0.1	0.018	14.4	0.1	2.5	3	1	0	3	3	3	0	AAA	domain
ArsA_ATPase	PF02374.10	gi|385804856|ref|YP_005841256.1|	-	0.021	13.8	3.0	0.099	11.6	0.1	2.4	2	0	0	2	2	2	0	Anion-transporting	ATPase
AAA_33	PF13671.1	gi|385804856|ref|YP_005841256.1|	-	0.041	13.7	0.0	0.097	12.5	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|385804856|ref|YP_005841256.1|	-	0.041	14.0	0.2	0.2	11.7	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
AAA_19	PF13245.1	gi|385804856|ref|YP_005841256.1|	-	0.06	13.1	0.0	2.6	7.8	0.0	2.7	2	0	0	2	2	2	0	Part	of	AAA	domain
DUF4618	PF15397.1	gi|385804856|ref|YP_005841256.1|	-	0.068	12.4	1.9	0.41	9.9	0.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4618)
SRPRB	PF09439.5	gi|385804856|ref|YP_005841256.1|	-	0.082	12.1	0.1	5.1	6.2	0.0	2.4	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
Thymidylate_kin	PF02223.12	gi|385804856|ref|YP_005841256.1|	-	0.13	11.5	0.1	0.47	9.8	0.0	1.9	2	0	0	2	2	2	0	Thymidylate	kinase
KTI12	PF08433.5	gi|385804856|ref|YP_005841256.1|	-	0.14	11.3	0.0	0.27	10.3	0.0	1.4	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
SMC_N	PF02463.14	gi|385804856|ref|YP_005841256.1|	-	0.14	11.3	0.0	0.25	10.5	0.0	1.4	1	0	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
SRP54	PF00448.17	gi|385804857|ref|YP_005841257.1|	-	2.5e-68	229.3	0.5	3.7e-68	228.8	0.3	1.2	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP54_N	PF02881.14	gi|385804857|ref|YP_005841257.1|	-	2.7e-12	46.6	0.2	2.7e-12	46.6	0.1	1.8	2	0	0	2	2	1	1	SRP54-type	protein,	helical	bundle	domain
cobW	PF02492.14	gi|385804857|ref|YP_005841257.1|	-	2.9e-05	23.5	0.4	7.5e-05	22.2	0.3	1.6	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
CbiA	PF01656.18	gi|385804857|ref|YP_005841257.1|	-	3.2e-05	23.4	4.1	3.7e-05	23.2	1.1	2.2	2	1	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
APS_kinase	PF01583.15	gi|385804857|ref|YP_005841257.1|	-	4.8e-05	23.0	0.0	8.4e-05	22.2	0.0	1.4	1	0	0	1	1	1	1	Adenylylsulphate	kinase
AAA_16	PF13191.1	gi|385804857|ref|YP_005841257.1|	-	6.8e-05	22.9	0.8	0.00018	21.5	0.0	2.1	2	1	0	2	2	2	1	AAA	ATPase	domain
Thymidylate_kin	PF02223.12	gi|385804857|ref|YP_005841257.1|	-	0.0001	21.7	0.1	0.005	16.2	0.0	2.4	2	0	0	2	2	2	1	Thymidylate	kinase
Zeta_toxin	PF06414.7	gi|385804857|ref|YP_005841257.1|	-	0.00014	21.0	0.1	0.00032	19.8	0.1	1.6	1	0	0	1	1	1	1	Zeta	toxin
MobB	PF03205.9	gi|385804857|ref|YP_005841257.1|	-	0.00015	21.4	0.2	0.00055	19.6	0.1	2.0	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_22	PF13401.1	gi|385804857|ref|YP_005841257.1|	-	0.00054	20.1	0.0	0.0016	18.6	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.1	gi|385804857|ref|YP_005841257.1|	-	0.00058	19.4	1.4	0.00058	19.4	0.9	2.0	2	1	0	2	2	2	1	AAA	domain
KTI12	PF08433.5	gi|385804857|ref|YP_005841257.1|	-	0.0015	17.8	0.9	0.0026	17.0	0.0	1.8	2	0	0	2	2	2	1	Chromatin	associated	protein	KTI12
AAA_28	PF13521.1	gi|385804857|ref|YP_005841257.1|	-	0.0018	18.2	0.8	0.0089	16.0	0.2	2.4	2	1	0	2	2	2	1	AAA	domain
NTPase_1	PF03266.10	gi|385804857|ref|YP_005841257.1|	-	0.0019	17.9	0.1	0.0043	16.7	0.1	1.6	1	0	0	1	1	1	1	NTPase
ArgK	PF03308.11	gi|385804857|ref|YP_005841257.1|	-	0.0085	14.8	0.7	0.018	13.8	0.5	1.7	1	1	0	1	1	1	1	ArgK	protein
ATP_bind_1	PF03029.12	gi|385804857|ref|YP_005841257.1|	-	0.012	15.1	0.0	0.024	14.1	0.0	1.6	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
VirC1	PF07015.6	gi|385804857|ref|YP_005841257.1|	-	0.012	14.6	0.1	0.021	13.9	0.1	1.4	1	0	0	1	1	1	0	VirC1	protein
AAA	PF00004.24	gi|385804857|ref|YP_005841257.1|	-	0.015	15.4	0.3	0.11	12.6	0.1	2.6	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.1	gi|385804857|ref|YP_005841257.1|	-	0.018	14.8	0.0	0.04	13.7	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_19	PF13245.1	gi|385804857|ref|YP_005841257.1|	-	0.018	14.7	0.1	0.051	13.3	0.1	1.8	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_17	PF13207.1	gi|385804857|ref|YP_005841257.1|	-	0.03	15.1	0.1	0.088	13.6	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
6PF2K	PF01591.13	gi|385804857|ref|YP_005841257.1|	-	0.033	13.2	0.0	0.056	12.5	0.0	1.3	1	0	0	1	1	1	0	6-phosphofructo-2-kinase
AAA_14	PF13173.1	gi|385804857|ref|YP_005841257.1|	-	0.039	13.8	0.0	0.12	12.3	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|385804857|ref|YP_005841257.1|	-	0.12	12.0	0.1	0.25	10.9	0.1	1.5	1	0	0	1	1	1	0	NACHT	domain
Viral_helicase1	PF01443.13	gi|385804857|ref|YP_005841257.1|	-	0.12	11.8	0.5	0.25	10.8	0.0	1.8	2	1	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
Podoplanin	PF05808.6	gi|385804857|ref|YP_005841257.1|	-	2.5	7.6	10.1	5.4	6.5	7.0	1.6	1	0	0	1	1	1	0	Podoplanin
DUF966	PF06136.8	gi|385804857|ref|YP_005841257.1|	-	6.7	6.0	9.8	10	5.4	6.8	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF966)
Prefoldin	PF02996.12	gi|385804858|ref|YP_005841258.1|	-	1.2e-24	86.2	7.2	1.2e-24	86.2	5.0	2.2	1	1	2	3	3	3	1	Prefoldin	subunit
TBPIP	PF07106.8	gi|385804858|ref|YP_005841258.1|	-	2.2e-05	24.0	16.2	0.0033	16.9	0.4	2.1	2	0	0	2	2	2	2	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
IncA	PF04156.9	gi|385804858|ref|YP_005841258.1|	-	2.3e-05	24.0	24.6	0.0028	17.2	4.6	2.1	2	0	0	2	2	2	2	IncA	protein
DUF641	PF04859.7	gi|385804858|ref|YP_005841258.1|	-	4.2e-05	23.3	13.2	0.0042	16.8	3.2	2.2	2	0	0	2	2	2	2	Plant	protein	of	unknown	function	(DUF641)
TSC22	PF01166.13	gi|385804858|ref|YP_005841258.1|	-	0.00012	21.9	18.6	0.00073	19.4	4.5	2.8	2	1	1	3	3	2	1	TSC-22/dip/bun	family
Fib_alpha	PF08702.5	gi|385804858|ref|YP_005841258.1|	-	0.00013	22.1	14.2	0.087	12.9	5.9	2.3	2	0	0	2	2	2	2	Fibrinogen	alpha/beta	chain	family
CENP-F_leu_zip	PF10473.4	gi|385804858|ref|YP_005841258.1|	-	0.00023	21.0	16.5	0.042	13.6	4.8	2.3	2	0	0	2	2	2	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Prefoldin_2	PF01920.15	gi|385804858|ref|YP_005841258.1|	-	0.00024	20.8	27.1	0.099	12.4	3.4	3.1	1	1	1	2	2	2	2	Prefoldin	subunit
DivIC	PF04977.10	gi|385804858|ref|YP_005841258.1|	-	0.00031	20.1	3.0	0.00031	20.1	2.1	3.3	2	1	1	3	3	2	1	Septum	formation	initiator
TMF_DNA_bd	PF12329.3	gi|385804858|ref|YP_005841258.1|	-	0.00032	20.4	23.9	0.0053	16.5	6.3	2.7	2	1	0	2	2	2	1	TATA	element	modulatory	factor	1	DNA	binding
GAS	PF13851.1	gi|385804858|ref|YP_005841258.1|	-	0.00037	19.7	13.3	0.052	12.7	3.4	2.1	2	0	0	2	2	2	2	Growth-arrest	specific	micro-tubule	binding
BLOC1_2	PF10046.4	gi|385804858|ref|YP_005841258.1|	-	0.00046	20.2	16.9	0.021	14.9	1.7	2.6	2	1	1	3	3	3	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF4618	PF15397.1	gi|385804858|ref|YP_005841258.1|	-	0.00056	19.3	13.1	0.009	15.3	3.1	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4618)
DUF972	PF06156.8	gi|385804858|ref|YP_005841258.1|	-	0.00058	20.1	15.8	0.023	15.0	0.3	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF972)
DUF812	PF05667.6	gi|385804858|ref|YP_005841258.1|	-	0.00074	18.1	17.9	0.025	13.0	1.4	2.0	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF812)
Golgin_A5	PF09787.4	gi|385804858|ref|YP_005841258.1|	-	0.00076	18.1	3.0	0.00076	18.1	2.1	2.0	1	1	1	2	2	2	1	Golgin	subfamily	A	member	5
MAD	PF05557.8	gi|385804858|ref|YP_005841258.1|	-	0.00081	17.6	13.6	0.0013	16.9	9.5	1.3	1	1	0	1	1	1	1	Mitotic	checkpoint	protein
ORF6C	PF10552.4	gi|385804858|ref|YP_005841258.1|	-	0.00088	18.9	12.0	0.024	14.3	0.3	2.2	2	0	0	2	2	2	1	ORF6C	domain
AAA_13	PF13166.1	gi|385804858|ref|YP_005841258.1|	-	0.0011	17.5	15.3	0.0057	15.1	8.4	1.9	1	1	1	2	2	2	2	AAA	domain
bZIP_1	PF00170.16	gi|385804858|ref|YP_005841258.1|	-	0.0011	18.8	12.4	0.12	12.3	1.2	2.7	2	1	0	2	2	2	2	bZIP	transcription	factor
Filament	PF00038.16	gi|385804858|ref|YP_005841258.1|	-	0.0013	18.3	14.8	0.07	12.5	4.0	2.1	2	0	0	2	2	2	2	Intermediate	filament	protein
LPP	PF04728.8	gi|385804858|ref|YP_005841258.1|	-	0.0018	18.0	11.9	0.072	12.8	1.3	2.8	2	1	0	2	2	2	2	Lipoprotein	leucine-zipper
DUF342	PF03961.8	gi|385804858|ref|YP_005841258.1|	-	0.002	16.6	11.0	0.036	12.5	2.4	2.0	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF342)
APG6	PF04111.7	gi|385804858|ref|YP_005841258.1|	-	0.002	17.2	21.1	0.046	12.7	6.4	2.0	2	0	0	2	2	2	2	Autophagy	protein	Apg6
PspA_IM30	PF04012.7	gi|385804858|ref|YP_005841258.1|	-	0.0021	17.4	20.7	0.015	14.6	7.7	2.1	2	0	0	2	2	2	1	PspA/IM30	family
NPV_P10	PF05531.7	gi|385804858|ref|YP_005841258.1|	-	0.0022	18.1	21.3	0.13	12.5	3.4	2.7	2	2	0	2	2	2	2	Nucleopolyhedrovirus	P10	protein
Spc24	PF08286.6	gi|385804858|ref|YP_005841258.1|	-	0.0024	17.5	20.0	0.049	13.3	0.7	2.2	2	0	0	2	2	2	2	Spc24	subunit	of	Ndc80
FlxA	PF14282.1	gi|385804858|ref|YP_005841258.1|	-	0.003	17.4	38.5	0.027	14.4	16.7	2.3	2	0	0	2	2	2	1	FlxA-like	protein
FliD_C	PF07195.7	gi|385804858|ref|YP_005841258.1|	-	0.0032	16.8	13.0	0.0085	15.4	4.1	2.1	2	0	0	2	2	2	1	Flagellar	hook-associated	protein	2	C-terminus
ketoacyl-synt	PF00109.21	gi|385804858|ref|YP_005841258.1|	-	0.0045	16.4	0.2	0.015	14.8	0.0	1.7	2	0	0	2	2	1	1	Beta-ketoacyl	synthase,	N-terminal	domain
ADIP	PF11559.3	gi|385804858|ref|YP_005841258.1|	-	0.0049	16.7	9.2	0.0049	16.7	6.4	2.1	2	0	0	2	2	2	1	Afadin-	and	alpha	-actinin-Binding
DUF4515	PF14988.1	gi|385804858|ref|YP_005841258.1|	-	0.0058	16.3	20.2	0.016	14.9	13.5	1.9	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4515)
Lzipper-MIP1	PF14389.1	gi|385804858|ref|YP_005841258.1|	-	0.0061	16.6	13.9	0.013	15.5	3.1	2.3	2	0	0	2	2	2	1	Leucine-zipper	of	ternary	complex	factor	MIP1
EzrA	PF06160.7	gi|385804858|ref|YP_005841258.1|	-	0.0069	14.6	16.7	0.013	13.6	0.8	2.1	2	0	0	2	2	2	1	Septation	ring	formation	regulator,	EzrA
Spectrin	PF00435.16	gi|385804858|ref|YP_005841258.1|	-	0.007	16.6	18.2	0.18	12.0	2.0	2.3	2	0	0	2	2	2	2	Spectrin	repeat
DUF904	PF06005.7	gi|385804858|ref|YP_005841258.1|	-	0.0073	16.5	24.9	0.2	11.9	7.6	2.6	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF904)
DUF4201	PF13870.1	gi|385804858|ref|YP_005841258.1|	-	0.0074	15.7	11.8	0.14	11.6	0.2	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4201)
Allexi_40kDa	PF05549.6	gi|385804858|ref|YP_005841258.1|	-	0.0076	15.5	5.5	0.51	9.5	1.3	2.1	2	0	0	2	2	2	1	Allexivirus	40kDa	protein
Spc7	PF08317.6	gi|385804858|ref|YP_005841258.1|	-	0.0077	14.9	16.3	0.063	11.9	1.4	2.1	2	0	0	2	2	2	2	Spc7	kinetochore	protein
TPR_MLP1_2	PF07926.7	gi|385804858|ref|YP_005841258.1|	-	0.0091	15.7	22.6	0.033	13.9	3.9	2.2	1	1	1	2	2	2	1	TPR/MLP1/MLP2-like	protein
TMF_TATA_bd	PF12325.3	gi|385804858|ref|YP_005841258.1|	-	0.0092	15.7	18.6	0.1	12.3	2.6	2.2	2	0	0	2	2	2	2	TATA	element	modulatory	factor	1	TATA	binding
AKNA	PF12443.3	gi|385804858|ref|YP_005841258.1|	-	0.0092	15.9	17.1	0.083	12.9	0.7	2.2	2	0	0	2	2	2	1	AT-hook-containing	transcription	factor
Cep57_MT_bd	PF06657.8	gi|385804858|ref|YP_005841258.1|	-	0.0097	15.8	20.1	0.18	11.7	6.9	2.3	2	0	0	2	2	2	2	Centrosome	microtubule-binding	domain	of	Cep57
Laminin_II	PF06009.7	gi|385804858|ref|YP_005841258.1|	-	0.01	15.5	12.3	0.12	12.0	0.9	2.2	2	0	0	2	2	2	0	Laminin	Domain	II
DUF3450	PF11932.3	gi|385804858|ref|YP_005841258.1|	-	0.011	15.0	26.6	0.085	12.1	9.7	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
Synaptobrevin	PF00957.16	gi|385804858|ref|YP_005841258.1|	-	0.013	15.0	4.1	0.013	15.0	2.8	2.3	2	0	0	2	2	2	0	Synaptobrevin
DUF4200	PF13863.1	gi|385804858|ref|YP_005841258.1|	-	0.014	15.3	4.9	0.014	15.3	3.4	2.9	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4200)
Seryl_tRNA_N	PF02403.17	gi|385804858|ref|YP_005841258.1|	-	0.015	15.2	14.1	0.36	10.8	1.7	2.5	2	0	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
CorA	PF01544.13	gi|385804858|ref|YP_005841258.1|	-	0.015	14.3	16.2	0.037	13.0	0.4	2.1	2	0	0	2	2	2	0	CorA-like	Mg2+	transporter	protein
Hemerythrin	PF01814.18	gi|385804858|ref|YP_005841258.1|	-	0.015	15.4	2.5	1.4	9.0	0.1	2.2	2	0	0	2	2	2	0	Hemerythrin	HHE	cation	binding	domain
Nnf1	PF03980.9	gi|385804858|ref|YP_005841258.1|	-	0.016	15.2	12.1	0.27	11.2	0.6	2.4	2	0	0	2	2	2	0	Nnf1
Uds1	PF15456.1	gi|385804858|ref|YP_005841258.1|	-	0.024	14.6	14.7	0.48	10.4	0.8	2.4	2	1	0	2	2	2	0	Up-regulated	During	Septation
ATP-synt_D	PF01813.12	gi|385804858|ref|YP_005841258.1|	-	0.026	14.1	8.2	0.12	11.9	2.0	2.1	2	0	0	2	2	2	0	ATP	synthase	subunit	D
DUF603	PF04645.7	gi|385804858|ref|YP_005841258.1|	-	0.026	14.4	2.4	2.7	7.9	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF603
COG2	PF06148.6	gi|385804858|ref|YP_005841258.1|	-	0.026	14.3	9.8	0.26	11.1	0.4	2.2	2	0	0	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Reo_sigmaC	PF04582.7	gi|385804858|ref|YP_005841258.1|	-	0.027	13.6	9.5	0.1	11.7	0.4	2.0	1	1	1	2	2	2	0	Reovirus	sigma	C	capsid	protein
HalX	PF08663.5	gi|385804858|ref|YP_005841258.1|	-	0.032	14.2	16.5	0.22	11.4	2.8	2.9	2	1	0	2	2	2	0	HalX	domain
Cluap1	PF10234.4	gi|385804858|ref|YP_005841258.1|	-	0.04	13.1	14.8	0.038	13.2	3.4	2.1	2	0	0	2	2	2	0	Clusterin-associated	protein-1
DUF4446	PF14584.1	gi|385804858|ref|YP_005841258.1|	-	0.043	13.6	10.9	0.69	9.7	2.7	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4446)
DUF4337	PF14235.1	gi|385804858|ref|YP_005841258.1|	-	0.044	13.6	17.1	0.11	12.3	6.3	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4337)
Tropomyosin_1	PF12718.2	gi|385804858|ref|YP_005841258.1|	-	0.052	13.3	25.0	0.61	9.9	3.0	2.3	2	0	0	2	2	2	0	Tropomyosin	like
Mnd1	PF03962.10	gi|385804858|ref|YP_005841258.1|	-	0.053	13.1	20.8	0.096	12.3	1.2	2.1	2	0	0	2	2	2	0	Mnd1	family
DUF1664	PF07889.7	gi|385804858|ref|YP_005841258.1|	-	0.062	13.1	16.1	0.54	10.0	2.4	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Effector_1	PF04518.7	gi|385804858|ref|YP_005841258.1|	-	0.062	12.2	11.9	1.3	7.9	0.2	2.1	2	0	0	2	2	2	0	Effector	from	type	III	secretion	system
YlqD	PF11068.3	gi|385804858|ref|YP_005841258.1|	-	0.063	13.3	26.5	0.17	11.9	8.8	2.6	2	1	0	2	2	2	0	YlqD	protein
Ax_dynein_light	PF10211.4	gi|385804858|ref|YP_005841258.1|	-	0.074	12.8	20.8	0.49	10.2	7.4	2.1	2	0	0	2	2	2	0	Axonemal	dynein	light	chain
Phage_GP20	PF06810.6	gi|385804858|ref|YP_005841258.1|	-	0.074	12.4	20.7	0.53	9.7	2.5	2.3	2	0	0	2	2	2	0	Phage	minor	structural	protein	GP20
DUF2730	PF10805.3	gi|385804858|ref|YP_005841258.1|	-	0.076	12.7	8.8	1.1	9.0	0.6	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2730)
CK2S	PF15011.1	gi|385804858|ref|YP_005841258.1|	-	0.086	12.6	10.1	0.92	9.2	0.3	2.1	2	0	0	2	2	2	0	Casein	Kinase	2	substrate
IFT57	PF10498.4	gi|385804858|ref|YP_005841258.1|	-	0.098	11.3	16.5	0.36	9.5	5.1	2.1	2	0	0	2	2	2	0	Intra-flagellar	transport	protein	57
DegS	PF05384.6	gi|385804858|ref|YP_005841258.1|	-	0.1	11.7	9.6	0.5	9.5	0.5	2.2	2	0	0	2	2	2	0	Sensor	protein	DegS
Vps51	PF08700.6	gi|385804858|ref|YP_005841258.1|	-	0.11	12.3	14.4	1.4	8.8	0.9	3.2	2	1	1	3	3	3	0	Vps51/Vps67
Syntaxin-6_N	PF09177.6	gi|385804858|ref|YP_005841258.1|	-	0.11	12.8	14.5	1.3	9.4	4.2	2.5	2	1	0	2	2	2	0	Syntaxin	6,	N-terminal
HCMV_UL139	PF12507.3	gi|385804858|ref|YP_005841258.1|	-	0.12	12.5	6.9	4.6	7.4	0.1	2.1	2	0	0	2	2	2	0	Human	Cytomegalovirus	UL139	protein
DUF4140	PF13600.1	gi|385804858|ref|YP_005841258.1|	-	0.13	12.7	20.9	0.59	10.6	3.4	2.7	1	1	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
EMP24_GP25L	PF01105.19	gi|385804858|ref|YP_005841258.1|	-	0.15	11.8	13.4	0.73	9.5	2.7	2.2	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
DUF948	PF06103.6	gi|385804858|ref|YP_005841258.1|	-	0.15	11.9	13.1	1.5	8.7	0.7	2.2	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
COG5	PF10392.4	gi|385804858|ref|YP_005841258.1|	-	0.2	11.6	7.0	3.6	7.5	0.2	2.3	2	0	0	2	2	2	0	Golgi	transport	complex	subunit	5
DUF607	PF04678.8	gi|385804858|ref|YP_005841258.1|	-	0.2	11.5	10.2	0.98	9.3	2.2	2.2	1	1	0	2	2	2	0	Protein	of	unknown	function,	DUF607
DUF2353	PF09789.4	gi|385804858|ref|YP_005841258.1|	-	0.22	10.7	13.4	0.4	9.8	9.3	1.4	1	1	0	1	1	1	0	Uncharacterized	coiled-coil	protein	(DUF2353)
DUF2130	PF09903.4	gi|385804858|ref|YP_005841258.1|	-	0.23	10.1	8.7	1.1	7.9	2.2	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2130)
Baculo_PEP_C	PF04513.7	gi|385804858|ref|YP_005841258.1|	-	0.23	11.2	17.1	0.52	10.1	1.4	2.1	1	1	1	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
STAT_alpha	PF01017.15	gi|385804858|ref|YP_005841258.1|	-	0.24	11.1	20.7	1.2	8.8	0.8	2.1	2	0	0	2	2	2	0	STAT	protein,	all-alpha	domain
DUF2746	PF10874.3	gi|385804858|ref|YP_005841258.1|	-	0.24	11.6	9.9	0.33	11.1	0.7	3.0	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2746)
OmpH	PF03938.9	gi|385804858|ref|YP_005841258.1|	-	0.24	11.3	28.6	0.82	9.5	2.8	2.1	2	0	0	2	2	2	0	Outer	membrane	protein	(OmpH-like)
Prefoldin_3	PF13758.1	gi|385804858|ref|YP_005841258.1|	-	0.25	11.1	8.4	4.9	6.9	4.8	2.8	1	1	0	1	1	1	0	Prefoldin	subunit
PhoU	PF01895.14	gi|385804858|ref|YP_005841258.1|	-	0.25	11.7	13.6	0.64	10.4	2.2	2.4	2	1	0	2	2	2	0	PhoU	domain
GrpE	PF01025.14	gi|385804858|ref|YP_005841258.1|	-	0.26	10.8	17.9	0.93	9.0	1.1	2.2	2	0	0	2	2	2	0	GrpE
Hemagglutinin	PF00509.13	gi|385804858|ref|YP_005841258.1|	-	0.26	9.3	10.5	0.29	9.2	0.2	2.0	2	0	0	2	2	2	0	Haemagglutinin
Mod_r	PF07200.8	gi|385804858|ref|YP_005841258.1|	-	0.3	11.0	19.3	1.3	8.8	1.5	2.1	2	0	0	2	2	2	0	Modifier	of	rudimentary	(Mod(r))	protein
DivIVA	PF05103.8	gi|385804858|ref|YP_005841258.1|	-	0.31	11.1	22.1	0.31	11.0	2.0	2.2	2	0	0	2	2	2	0	DivIVA	protein
DUF3375	PF11855.3	gi|385804858|ref|YP_005841258.1|	-	0.31	9.7	15.1	0.73	8.5	2.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3375)
Sec34	PF04136.10	gi|385804858|ref|YP_005841258.1|	-	0.31	10.7	11.1	1.9	8.1	0.8	2.1	2	0	0	2	2	2	0	Sec34-like	family
FliJ	PF02050.11	gi|385804858|ref|YP_005841258.1|	-	0.32	11.0	25.1	0.067	13.2	1.4	2.5	2	1	0	2	2	2	0	Flagellar	FliJ	protein
Tektin	PF03148.9	gi|385804858|ref|YP_005841258.1|	-	0.33	9.4	17.5	1	7.8	1.3	2.1	2	0	0	2	2	2	0	Tektin	family
Rootletin	PF15035.1	gi|385804858|ref|YP_005841258.1|	-	0.34	10.8	17.3	1.4	8.8	5.0	2.1	2	0	0	2	2	2	0	Ciliary	rootlet	component,	centrosome	cohesion
FlaC_arch	PF05377.6	gi|385804858|ref|YP_005841258.1|	-	0.34	10.8	15.2	1.5	8.8	2.3	3.6	2	2	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
ATG16	PF08614.6	gi|385804858|ref|YP_005841258.1|	-	0.35	10.6	24.4	2.9	7.6	3.3	2.1	1	1	0	1	1	1	0	Autophagy	protein	16	(ATG16)
Occludin_ELL	PF07303.8	gi|385804858|ref|YP_005841258.1|	-	0.36	11.5	11.9	1.5	9.6	0.7	2.3	2	0	0	2	2	2	0	Occludin	homology	domain
SYCE1	PF15233.1	gi|385804858|ref|YP_005841258.1|	-	0.42	10.5	17.7	0.68	9.8	2.6	2.3	2	0	0	2	2	2	0	Synaptonemal	complex	central	element	protein	1
NTR2	PF15458.1	gi|385804858|ref|YP_005841258.1|	-	0.45	9.6	22.3	0.58	9.3	4.5	2.4	2	0	0	2	2	2	0	Nineteen	complex-related	protein	2
Nsp1_C	PF05064.8	gi|385804858|ref|YP_005841258.1|	-	0.47	10.1	20.8	0.99	9.0	6.7	2.4	2	0	0	2	2	2	0	Nsp1-like	C-terminal	region
Not3	PF04065.10	gi|385804858|ref|YP_005841258.1|	-	0.47	9.6	17.1	0.43	9.8	5.6	2.1	2	0	0	2	2	2	0	Not1	N-terminal	domain,	CCR4-Not	complex	component
DUF3552	PF12072.3	gi|385804858|ref|YP_005841258.1|	-	0.5	9.5	23.9	0.42	9.7	8.6	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3552)
Bap31	PF05529.7	gi|385804858|ref|YP_005841258.1|	-	0.5	9.7	13.7	1.8	7.9	3.6	2.2	2	0	0	2	2	2	0	B-cell	receptor-associated	protein	31-like
HemX	PF04375.9	gi|385804858|ref|YP_005841258.1|	-	0.51	8.8	23.6	0.96	7.9	2.5	2.2	1	1	0	2	2	2	0	HemX
Fzo_mitofusin	PF04799.8	gi|385804858|ref|YP_005841258.1|	-	0.52	9.6	13.3	2	7.7	3.3	2.1	2	0	0	2	2	2	0	fzo-like	conserved	region
Sas10_Utp3	PF04000.10	gi|385804858|ref|YP_005841258.1|	-	0.56	10.4	11.2	0.56	10.4	0.7	2.6	2	1	0	2	2	2	0	Sas10/Utp3/C1D	family
AAA_27	PF13514.1	gi|385804858|ref|YP_005841258.1|	-	0.6	7.7	20.5	1.6	6.3	14.2	1.6	1	1	0	1	1	1	0	AAA	domain
Dor1	PF04124.7	gi|385804858|ref|YP_005841258.1|	-	0.65	8.3	14.6	0.82	8.0	0.9	2.1	2	0	0	2	2	2	0	Dor1-like	family
DUF1515	PF07439.6	gi|385804858|ref|YP_005841258.1|	-	0.67	9.7	11.9	0.17	11.6	0.8	2.5	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1515)
Rop-like	PF05082.8	gi|385804858|ref|YP_005841258.1|	-	0.67	9.4	5.8	1.4	8.4	0.6	2.9	2	1	0	2	2	2	0	Rop-like
Med9	PF07544.8	gi|385804858|ref|YP_005841258.1|	-	0.7	9.6	17.6	0.057	13.1	3.3	2.5	2	1	0	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Tup_N	PF08581.5	gi|385804858|ref|YP_005841258.1|	-	0.83	9.8	18.7	2.5	8.3	5.7	2.5	2	0	0	2	2	2	0	Tup	N-terminal
FliD_N	PF02465.13	gi|385804858|ref|YP_005841258.1|	-	0.85	10.0	0.1	0.85	10.0	0.0	3.1	2	1	1	3	3	2	0	Flagellar	hook-associated	protein	2	N-terminus
Macoilin	PF09726.4	gi|385804858|ref|YP_005841258.1|	-	0.86	7.8	19.3	0.087	11.1	6.8	1.7	1	1	1	2	2	2	0	Transmembrane	protein
DUF2935	PF11155.3	gi|385804858|ref|YP_005841258.1|	-	0.89	9.6	4.4	23	5.0	1.7	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF2935)
Tmemb_cc2	PF10267.4	gi|385804858|ref|YP_005841258.1|	-	0.95	7.9	14.0	0.68	8.4	1.1	2.1	2	0	0	2	2	2	0	Predicted	transmembrane	and	coiled-coil	2	protein
LUC7	PF03194.10	gi|385804858|ref|YP_005841258.1|	-	1	8.8	19.9	5.2e+02	-0.1	13.8	2.1	1	1	0	1	1	1	0	LUC7	N_terminus
HALZ	PF02183.13	gi|385804858|ref|YP_005841258.1|	-	1.1	9.0	13.0	4.3	7.1	2.3	2.9	2	1	0	2	2	2	0	Homeobox	associated	leucine	zipper
Lectin_N	PF03954.9	gi|385804858|ref|YP_005841258.1|	-	1.1	8.6	11.1	1.8	7.9	3.6	2.1	2	0	0	2	2	2	0	Hepatic	lectin,	N-terminal	domain
Potyvirid-P3	PF13608.1	gi|385804858|ref|YP_005841258.1|	-	1.1	8.2	11.1	0.089	11.9	0.2	2.0	2	0	0	2	2	2	0	Protein	P3	of	Potyviral	polyprotein
Hormone_1	PF00103.15	gi|385804858|ref|YP_005841258.1|	-	1.3	8.3	7.7	1.9	7.8	2.5	2.0	2	0	0	2	2	2	0	Somatotropin	hormone	family
DUF3373	PF11853.3	gi|385804858|ref|YP_005841258.1|	-	1.3	7.4	17.5	0.8	8.1	0.5	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3373)
TMCO5	PF14992.1	gi|385804858|ref|YP_005841258.1|	-	1.3	8.0	18.9	0.23	10.5	4.8	2.0	2	0	0	2	2	2	0	TMCO5	family
DUF2232	PF09991.4	gi|385804858|ref|YP_005841258.1|	-	1.3	7.9	3.2	2.1	7.2	2.3	1.4	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2232)
DASH_Dam1	PF08653.5	gi|385804858|ref|YP_005841258.1|	-	1.3	8.8	10.5	2.3	8.0	0.6	3.2	2	2	0	2	2	2	0	DASH	complex	subunit	Dam1
DUF2205	PF10224.4	gi|385804858|ref|YP_005841258.1|	-	1.4	8.5	15.6	0.26	10.8	0.6	2.5	2	1	0	2	2	2	0	Predicted	coiled-coil	protein	(DUF2205)
Snapin_Pallidin	PF14712.1	gi|385804858|ref|YP_005841258.1|	-	1.4	9.2	23.0	3.6	7.9	1.7	3.0	2	2	1	3	3	3	0	Snapin/Pallidin
Cob_adeno_trans	PF01923.13	gi|385804858|ref|YP_005841258.1|	-	1.5	8.5	10.9	2.3	7.9	2.9	2.6	1	1	1	2	2	2	0	Cobalamin	adenosyltransferase
MIS13	PF08202.6	gi|385804858|ref|YP_005841258.1|	-	1.5	7.7	16.4	4.5	6.2	11.4	1.6	1	1	0	1	1	1	0	Mis12-Mtw1	protein	family
Atg14	PF10186.4	gi|385804858|ref|YP_005841258.1|	-	1.5	7.6	21.0	0.66	8.8	1.8	2.0	1	1	0	2	2	2	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
P4Ha_N	PF08336.6	gi|385804858|ref|YP_005841258.1|	-	1.6	8.5	11.8	6	6.6	3.0	2.5	2	0	0	2	2	2	0	Prolyl	4-Hydroxylase	alpha-subunit,	N-terminal	region
Transposase_22	PF02994.9	gi|385804858|ref|YP_005841258.1|	-	1.6	7.1	14.2	1.8	6.9	0.7	2.0	1	1	1	2	2	2	0	L1	transposable	element
DUF2514	PF10721.4	gi|385804858|ref|YP_005841258.1|	-	1.6	8.3	11.7	0.69	9.5	0.1	2.6	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2514)
CCDC155	PF14662.1	gi|385804858|ref|YP_005841258.1|	-	1.8	8.0	28.6	2.7	7.5	4.6	2.1	1	1	1	2	2	2	0	Coiled-coil	region	of	CCDC155
ERM	PF00769.14	gi|385804858|ref|YP_005841258.1|	-	1.8	8.0	24.0	4.9	6.6	8.6	2.1	1	1	1	2	2	2	0	Ezrin/radixin/moesin	family
DUF4164	PF13747.1	gi|385804858|ref|YP_005841258.1|	-	2.1	8.5	20.1	5	7.3	2.7	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4164)
Adeno_PIX	PF03955.9	gi|385804858|ref|YP_005841258.1|	-	2.2	8.8	9.7	4.5	7.8	2.5	2.4	2	0	0	2	2	2	0	Adenovirus	hexon-associated	protein	(IX)
Herpes_UL6	PF01763.11	gi|385804858|ref|YP_005841258.1|	-	2.2	6.3	14.2	0.37	8.9	5.5	1.9	1	1	1	2	2	2	0	Herpesvirus	UL6	like
HrpB7	PF09486.5	gi|385804858|ref|YP_005841258.1|	-	2.4	8.0	19.5	0.33	10.8	4.1	2.5	1	1	1	2	2	2	0	Bacterial	type	III	secretion	protein	(HrpB7)
Pox_A_type_inc	PF04508.7	gi|385804858|ref|YP_005841258.1|	-	2.5	8.1	8.5	2.7	8.0	2.0	2.8	2	0	0	2	2	2	0	Viral	A-type	inclusion	protein	repeat
V_ATPase_I	PF01496.14	gi|385804858|ref|YP_005841258.1|	-	2.5	5.8	18.4	0.68	7.7	1.6	2.0	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
KLRAQ	PF10205.4	gi|385804858|ref|YP_005841258.1|	-	2.7	8.0	16.9	2.5	8.1	5.8	2.2	2	0	0	2	2	2	0	Predicted	coiled-coil	domain-containing	protein
DUF1759	PF03564.10	gi|385804858|ref|YP_005841258.1|	-	2.7	7.8	6.3	5.1	6.8	0.7	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1759)
DUF745	PF05335.8	gi|385804858|ref|YP_005841258.1|	-	2.7	7.4	15.9	2	7.8	0.8	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF745)
IL2	PF00715.12	gi|385804858|ref|YP_005841258.1|	-	2.8	7.6	5.2	0.62	9.7	0.1	2.1	1	1	1	2	2	1	0	Interleukin	2
Cauli_AT	PF03233.8	gi|385804858|ref|YP_005841258.1|	-	2.9	7.5	7.4	4.9	6.8	0.3	2.2	2	0	0	2	2	2	0	Aphid	transmission	protein
DUF2120	PF09893.4	gi|385804858|ref|YP_005841258.1|	-	2.9	7.8	7.5	5.5	6.9	0.3	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2120)
Nup54	PF13874.1	gi|385804858|ref|YP_005841258.1|	-	3	7.5	18.2	2	8.0	1.3	2.2	2	0	0	2	2	2	0	Nucleoporin	complex	subunit	54
Syntaxin	PF00804.20	gi|385804858|ref|YP_005841258.1|	-	3.2	7.9	24.6	72	3.6	17.0	2.2	1	1	0	1	1	1	0	Syntaxin
Viral_P18	PF04521.8	gi|385804858|ref|YP_005841258.1|	-	3.3	7.1	13.2	9.6	5.6	4.8	2.5	2	1	0	2	2	2	0	ssRNA	positive	strand	viral	18kD	cysteine	rich	protein
Med4	PF10018.4	gi|385804858|ref|YP_005841258.1|	-	3.4	7.0	18.0	2.5	7.4	1.3	2.2	2	0	0	2	2	2	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
Lge1	PF11488.3	gi|385804858|ref|YP_005841258.1|	-	3.4	7.9	13.6	4.8	7.4	2.1	2.5	2	1	0	2	2	2	0	Transcriptional	regulatory	protein	LGE1
DASH_Spc34	PF08657.5	gi|385804858|ref|YP_005841258.1|	-	3.5	7.2	20.6	1.1	8.8	1.8	2.1	2	0	0	2	2	2	0	DASH	complex	subunit	Spc34
DUF883	PF05957.8	gi|385804858|ref|YP_005841258.1|	-	3.5	8.0	11.1	3.9	7.9	2.7	2.5	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
CENP-H	PF05837.7	gi|385804858|ref|YP_005841258.1|	-	3.9	7.7	21.7	6.5	6.9	7.6	2.7	2	1	0	2	2	2	0	Centromere	protein	H	(CENP-H)
CCDC-167	PF15188.1	gi|385804858|ref|YP_005841258.1|	-	4.4	7.3	12.1	4.5	7.2	2.4	2.8	2	1	0	2	2	2	0	Coiled-coil	domain-containing	protein	167
SlyX	PF04102.7	gi|385804858|ref|YP_005841258.1|	-	4.8	7.6	30.2	3.6	8.0	4.0	2.4	2	0	0	2	2	2	0	SlyX
Rho_Binding	PF08912.6	gi|385804858|ref|YP_005841258.1|	-	5	7.4	17.3	0.69	10.2	4.6	2.7	2	1	0	2	2	2	0	Rho	Binding
HAUS6_N	PF14661.1	gi|385804858|ref|YP_005841258.1|	-	5.2	6.3	17.5	3.2	7.0	0.4	2.1	2	0	0	2	2	2	0	HAUS	augmin-like	complex	subunit	6	N-terminus
DUF4391	PF14335.1	gi|385804858|ref|YP_005841258.1|	-	5.4	6.3	10.9	1.1	8.5	2.7	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4391)
MscS_porin	PF12795.2	gi|385804858|ref|YP_005841258.1|	-	5.4	6.2	38.7	6.8e+02	-0.7	26.8	2.1	1	1	0	1	1	1	0	Mechanosensitive	ion	channel	porin	domain
PCRF	PF03462.13	gi|385804858|ref|YP_005841258.1|	-	5.8	6.6	14.2	0.67	9.6	0.7	2.5	2	1	0	2	2	2	0	PCRF	domain
COG6	PF06419.6	gi|385804858|ref|YP_005841258.1|	-	5.8	4.9	17.9	3.1	5.8	1.6	2.0	2	0	0	2	2	2	0	Conserved	oligomeric	complex	COG6
CENP-Q	PF13094.1	gi|385804858|ref|YP_005841258.1|	-	5.9	6.8	23.1	1.9	8.4	7.0	2.2	1	1	1	2	2	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
Tnp_P_element	PF12017.3	gi|385804858|ref|YP_005841258.1|	-	6.5	5.9	11.9	6.7	5.8	3.0	2.2	2	0	0	2	2	2	0	Transposase	protein
DUF1192	PF06698.6	gi|385804858|ref|YP_005841258.1|	-	6.7	6.5	12.2	3.8	7.3	1.0	2.9	2	2	0	2	2	2	0	Protein	of	unknown	function	(DUF1192)
DUF4407	PF14362.1	gi|385804858|ref|YP_005841258.1|	-	7.6	5.3	21.9	50	2.7	15.1	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
TMPIT	PF07851.8	gi|385804858|ref|YP_005841258.1|	-	7.6	5.4	10.5	6.9	5.6	0.1	2.0	2	0	0	2	2	2	0	TMPIT-like	protein
SPT16	PF08644.6	gi|385804858|ref|YP_005841258.1|	-	7.8	6.3	12.0	23	4.7	0.1	2.1	1	1	1	2	2	2	0	FACT	complex	subunit	(SPT16/CDC68)
Phasin	PF05597.6	gi|385804858|ref|YP_005841258.1|	-	8.2	6.2	12.6	6.3	6.5	0.7	2.8	2	1	0	2	2	2	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
PRKCSH_1	PF13015.1	gi|385804858|ref|YP_005841258.1|	-	8.8	5.7	7.7	5.6	6.4	0.3	2.3	2	0	0	2	2	2	0	Glucosidase	II	beta	subunit-like	protein
Peptidase_M16	PF00675.15	gi|385804858|ref|YP_005841258.1|	-	9	6.0	10.2	3.1	7.5	2.2	2.1	2	0	0	2	2	2	0	Insulinase	(Peptidase	family	M16)
DUF16	PF01519.11	gi|385804858|ref|YP_005841258.1|	-	9.4	6.5	18.1	7.5	6.8	2.8	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF16
Exonuc_VII_S	PF02609.11	gi|385804858|ref|YP_005841258.1|	-	9.7	6.0	15.7	0.13	12.0	1.8	3.1	2	2	0	2	2	2	0	Exonuclease	VII	small	subunit
HR1	PF02185.11	gi|385804858|ref|YP_005841258.1|	-	9.9	5.9	22.4	0.23	11.2	1.8	3.1	2	1	0	2	2	1	0	Hr1	repeat
Ribosomal_L18ae	PF01775.12	gi|385804859|ref|YP_005841259.1|	-	1e-11	44.7	0.0	1.2e-11	44.6	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	L18ae/LX	protein	domain
eIF-6	PF01912.13	gi|385804860|ref|YP_005841260.1|	-	2.3e-69	232.5	0.3	2.9e-69	232.1	0.2	1.1	1	0	0	1	1	1	1	eIF-6	family
Ribosomal_L31e	PF01198.14	gi|385804861|ref|YP_005841261.1|	-	4.9e-27	93.4	0.0	6.1e-27	93.1	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L31e
Ribosomal_L39	PF00832.15	gi|385804862|ref|YP_005841262.1|	-	3.4e-21	74.4	7.3	4e-21	74.1	5.0	1.1	1	0	0	1	1	1	1	Ribosomal	L39	protein
TPR_11	PF13414.1	gi|385804863|ref|YP_005841263.1|	-	1.1e-25	89.0	12.0	1.3e-12	47.2	1.2	3.2	1	1	1	3	3	3	3	TPR	repeat
TPR_1	PF00515.23	gi|385804863|ref|YP_005841263.1|	-	1.9e-25	87.3	0.4	1.2e-06	27.9	0.0	5.0	5	0	0	5	5	5	4	Tetratricopeptide	repeat
TPR_2	PF07719.12	gi|385804863|ref|YP_005841263.1|	-	8.2e-24	81.5	6.8	4.9e-05	22.9	0.1	5.2	5	0	0	5	5	5	5	Tetratricopeptide	repeat
TPR_12	PF13424.1	gi|385804863|ref|YP_005841263.1|	-	2.6e-17	62.5	11.2	1.4e-07	31.2	2.3	3.2	1	1	2	3	3	3	3	Tetratricopeptide	repeat
TPR_16	PF13432.1	gi|385804863|ref|YP_005841263.1|	-	2.1e-16	60.1	11.9	4.2e-10	40.0	0.7	3.3	2	1	1	3	3	3	3	Tetratricopeptide	repeat
TPR_8	PF13181.1	gi|385804863|ref|YP_005841263.1|	-	2.6e-16	58.0	0.0	0.0036	16.9	0.0	5.2	5	0	0	5	5	5	4	Tetratricopeptide	repeat
TPR_14	PF13428.1	gi|385804863|ref|YP_005841263.1|	-	1.9e-13	49.7	14.3	1.7e-05	25.0	0.3	4.9	1	1	4	5	5	5	4	Tetratricopeptide	repeat
TPR_9	PF13371.1	gi|385804863|ref|YP_005841263.1|	-	4.3e-12	45.6	3.7	9.1e-06	25.4	0.2	3.4	1	1	2	3	3	3	2	Tetratricopeptide	repeat
TPR_17	PF13431.1	gi|385804863|ref|YP_005841263.1|	-	1.4e-11	43.6	1.3	0.0018	18.2	0.0	4.7	4	0	0	4	4	4	3	Tetratricopeptide	repeat
TPR_7	PF13176.1	gi|385804863|ref|YP_005841263.1|	-	2.9e-10	39.1	7.7	0.00042	19.8	0.1	5.2	4	1	1	5	5	5	3	Tetratricopeptide	repeat
TPR_6	PF13174.1	gi|385804863|ref|YP_005841263.1|	-	8.4e-08	32.1	3.0	2.2	8.9	0.0	5.1	5	0	0	5	5	5	1	Tetratricopeptide	repeat
TPR_19	PF14559.1	gi|385804863|ref|YP_005841263.1|	-	2e-06	28.0	9.5	0.0099	16.2	0.4	3.3	2	1	0	3	3	3	2	Tetratricopeptide	repeat
TPR_10	PF13374.1	gi|385804863|ref|YP_005841263.1|	-	5e-05	23.0	16.5	0.031	14.2	0.3	4.7	5	0	0	5	5	5	2	Tetratricopeptide	repeat
Apc3	PF12895.2	gi|385804863|ref|YP_005841263.1|	-	0.00015	21.8	0.0	0.58	10.3	0.0	2.4	1	1	0	2	2	2	2	Anaphase-promoting	complex,	cyclosome,	subunit	3
Apc5	PF12862.2	gi|385804863|ref|YP_005841263.1|	-	0.00038	20.2	1.0	0.54	10.1	0.1	3.4	1	1	1	2	2	2	1	Anaphase-promoting	complex	subunit	5
TPR_4	PF07721.9	gi|385804863|ref|YP_005841263.1|	-	0.00046	20.3	13.1	0.018	15.3	1.0	4.7	5	0	0	5	5	5	1	Tetratricopeptide	repeat
DUF3856	PF12968.2	gi|385804863|ref|YP_005841263.1|	-	0.00061	19.6	11.1	0.023	14.4	0.5	4.1	1	1	2	3	3	3	1	Domain	of	Unknown	Function	(DUF3856)
YfiO	PF13525.1	gi|385804863|ref|YP_005841263.1|	-	0.00066	19.2	0.4	0.0033	16.9	0.1	1.9	1	1	1	2	2	2	1	Outer	membrane	lipoprotein
TPR_20	PF14561.1	gi|385804863|ref|YP_005841263.1|	-	0.0029	17.6	3.4	0.36	10.9	0.1	3.1	1	1	2	3	3	3	1	Tetratricopeptide	repeat
TPR_18	PF13512.1	gi|385804863|ref|YP_005841263.1|	-	0.014	15.4	0.0	0.051	13.5	0.0	1.9	1	1	1	2	2	2	0	Tetratricopeptide	repeat
MIT	PF04212.13	gi|385804863|ref|YP_005841263.1|	-	0.45	10.4	7.1	6.6	6.6	0.2	3.3	2	1	0	3	3	3	0	MIT	(microtubule	interacting	and	transport)	domain
DUF424	PF04242.8	gi|385804864|ref|YP_005841264.1|	-	1.3e-31	108.4	0.1	1.7e-31	108.0	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF424)
Merozoite_SPAM	PF07133.6	gi|385804864|ref|YP_005841264.1|	-	1.9	8.3	6.7	3	7.7	4.6	1.3	1	0	0	1	1	1	0	Merozoite	surface	protein	(SPAM)
Cwf_Cwc_15	PF04889.7	gi|385804864|ref|YP_005841264.1|	-	9.9	5.7	8.6	13	5.3	6.0	1.2	1	0	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
Aminotran_5	PF00266.14	gi|385804865|ref|YP_005841265.1|	-	1.8e-148	494.2	0.0	2e-148	494.0	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.16	gi|385804865|ref|YP_005841265.1|	-	1.1e-11	44.3	0.0	7.4e-10	38.3	0.0	2.0	2	0	0	2	2	2	2	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.16	gi|385804865|ref|YP_005841265.1|	-	4.4e-09	35.9	0.0	5.8e-09	35.5	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
DegT_DnrJ_EryC1	PF01041.12	gi|385804865|ref|YP_005841265.1|	-	2.1e-08	33.6	0.4	3.4e-08	32.9	0.3	1.3	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Cys_Met_Meta_PP	PF01053.15	gi|385804865|ref|YP_005841265.1|	-	0.00056	18.3	0.0	0.00086	17.6	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Pyridoxal_deC	PF00282.14	gi|385804865|ref|YP_005841265.1|	-	0.03	12.7	0.0	0.057	11.8	0.0	1.4	1	0	0	1	1	1	0	Pyridoxal-dependent	decarboxylase	conserved	domain
SelA	PF03841.8	gi|385804865|ref|YP_005841265.1|	-	0.039	12.6	0.0	0.081	11.6	0.0	1.5	1	1	0	1	1	1	0	L-seryl-tRNA	selenium	transferase
NifU_N	PF01592.11	gi|385804866|ref|YP_005841266.1|	-	1.8e-27	95.7	0.1	2.2e-27	95.4	0.0	1.0	1	0	0	1	1	1	1	NifU-like	N	terminal	domain
SufE	PF02657.10	gi|385804866|ref|YP_005841266.1|	-	0.0071	15.9	0.0	0.0083	15.7	0.0	1.1	1	0	0	1	1	1	1	Fe-S	metabolism	associated	domain
Lip_prot_lig_C	PF10437.4	gi|385804866|ref|YP_005841266.1|	-	0.092	12.4	0.0	0.13	11.9	0.0	1.3	1	0	0	1	1	1	0	Bacterial	lipoate	protein	ligase	C-terminus
TSCPD	PF12637.2	gi|385804866|ref|YP_005841266.1|	-	0.14	12.1	0.1	0.2	11.6	0.0	1.3	1	0	0	1	1	1	0	TSCPD	domain
Rad51	PF08423.6	gi|385804867|ref|YP_005841267.1|	-	2.1e-75	252.9	0.0	5e-45	153.4	0.0	2.1	2	0	0	2	2	2	2	Rad51
HHH_5	PF14520.1	gi|385804867|ref|YP_005841267.1|	-	3.3e-11	43.2	0.0	9.2e-11	41.7	0.0	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
AAA_25	PF13481.1	gi|385804867|ref|YP_005841267.1|	-	5.5e-10	38.9	0.1	8.5e-10	38.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
RecA	PF00154.16	gi|385804867|ref|YP_005841267.1|	-	6e-07	28.8	0.0	0.0047	16.0	0.0	2.2	2	0	0	2	2	2	2	recA	bacterial	DNA	recombination	protein
HHH	PF00633.18	gi|385804867|ref|YP_005841267.1|	-	1.5e-05	24.3	0.1	0.011	15.3	0.0	2.6	2	0	0	2	2	2	2	Helix-hairpin-helix	motif
KaiC	PF06745.8	gi|385804867|ref|YP_005841267.1|	-	6.8e-05	22.0	0.0	0.00055	19.1	0.0	2.1	2	0	0	2	2	2	1	KaiC
HHH_2	PF12826.2	gi|385804867|ref|YP_005841267.1|	-	0.0001	22.1	0.0	0.00031	20.5	0.0	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
Cdd1	PF11731.3	gi|385804867|ref|YP_005841267.1|	-	0.00011	22.0	0.0	0.00036	20.3	0.0	1.9	2	0	0	2	2	2	1	Pathogenicity	locus
AAA_22	PF13401.1	gi|385804867|ref|YP_005841267.1|	-	0.011	15.8	0.0	0.056	13.5	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
IMS_HHH	PF11798.3	gi|385804867|ref|YP_005841267.1|	-	0.032	14.2	0.0	0.14	12.2	0.0	2.2	2	0	0	2	2	2	0	IMS	family	HHH	motif
DNA_pol_lambd_f	PF10391.4	gi|385804867|ref|YP_005841267.1|	-	0.052	13.0	0.0	0.24	10.9	0.0	2.2	1	1	1	2	2	2	0	Fingers	domain	of	DNA	polymerase	lambda
Peptidase_M48	PF01435.13	gi|385804869|ref|YP_005841269.1|	-	7.8e-41	140.0	0.0	1e-40	139.7	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.6	gi|385804869|ref|YP_005841269.1|	-	5.8e-07	28.7	0.7	8.8e-06	24.8	0.0	2.2	2	0	0	2	2	2	1	BlaR1	peptidase	M56
SprT-like	PF10263.4	gi|385804869|ref|YP_005841269.1|	-	0.0022	17.6	0.0	0.0032	17.1	0.0	1.2	1	0	0	1	1	1	1	SprT-like	family
Tic20	PF09685.5	gi|385804869|ref|YP_005841269.1|	-	0.016	15.1	4.9	1.1	9.3	0.3	2.2	2	0	0	2	2	2	0	Tic20-like	protein
DUF420	PF04238.7	gi|385804869|ref|YP_005841269.1|	-	0.027	14.4	0.3	0.027	14.4	0.2	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF420)
DUF3007	PF11460.3	gi|385804869|ref|YP_005841269.1|	-	0.071	13.1	0.1	0.17	11.9	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3007)
Peptidase_MA_2	PF13485.1	gi|385804869|ref|YP_005841269.1|	-	0.12	12.4	0.0	0.24	11.4	0.0	1.5	1	0	0	1	1	1	0	Peptidase	MA	superfamily
DUF2201_N	PF13203.1	gi|385804869|ref|YP_005841269.1|	-	0.12	11.5	0.0	0.17	11.0	0.0	1.2	1	0	0	1	1	1	0	Putative	metallopeptidase	domain
MENTAL	PF10457.4	gi|385804869|ref|YP_005841269.1|	-	0.13	11.8	0.0	0.13	11.8	0.0	1.8	2	0	0	2	2	2	0	Cholesterol-capturing	domain
DUF1469	PF07332.6	gi|385804869|ref|YP_005841269.1|	-	0.36	10.5	4.0	1.4	8.6	0.1	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1469)
NMD3	PF04981.8	gi|385804870|ref|YP_005841270.1|	-	1.4e-67	227.2	0.2	1.7e-67	226.9	0.1	1.1	1	0	0	1	1	1	1	NMD3	family
Thioredoxin_2	PF13098.1	gi|385804870|ref|YP_005841270.1|	-	0.077	13.2	0.0	0.15	12.2	0.0	1.6	1	0	0	1	1	1	0	Thioredoxin-like	domain
DZR	PF12773.2	gi|385804870|ref|YP_005841270.1|	-	0.099	12.4	6.0	3.9	7.3	2.8	3.1	2	1	0	2	2	2	0	Double	zinc	ribbon
zf-FPG_IleRS	PF06827.9	gi|385804870|ref|YP_005841270.1|	-	0.14	11.7	11.8	0.61	9.7	1.2	4.1	3	1	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
FYVE	PF01363.16	gi|385804870|ref|YP_005841270.1|	-	0.31	10.9	4.9	2.2	8.2	0.7	2.6	2	0	0	2	2	2	0	FYVE	zinc	finger
zinc_ribbon_2	PF13240.1	gi|385804870|ref|YP_005841270.1|	-	0.4	10.2	5.3	4.6	6.8	0.1	3.4	3	0	0	3	3	3	0	zinc-ribbon	domain
DUF35_N	PF12172.3	gi|385804870|ref|YP_005841270.1|	-	0.47	10.4	0.1	0.47	10.4	0.1	3.0	3	0	0	3	3	3	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
TF_Zn_Ribbon	PF08271.7	gi|385804870|ref|YP_005841270.1|	-	0.68	9.2	6.4	7.3	6.0	0.5	3.5	3	1	0	3	3	3	0	TFIIB	zinc-binding
zf-ribbon_3	PF13248.1	gi|385804870|ref|YP_005841270.1|	-	0.8	8.9	9.5	3.3	7.0	0.1	3.5	4	0	0	4	4	4	0	zinc-ribbon	domain
DUF4193	PF13834.1	gi|385804870|ref|YP_005841270.1|	-	1.3	9.1	4.5	2.4	8.4	0.1	2.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4193)
Rpr2	PF04032.11	gi|385804870|ref|YP_005841270.1|	-	1.4	8.8	4.8	1.6	8.6	0.0	2.9	2	1	0	2	2	2	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
GFA	PF04828.9	gi|385804870|ref|YP_005841270.1|	-	1.7	8.6	5.1	17	5.4	0.0	3.2	2	1	0	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
zf-NADH-PPase	PF09297.6	gi|385804870|ref|YP_005841270.1|	-	7.8	6.0	9.4	3.2	7.3	0.1	3.2	3	0	0	3	3	3	0	NADH	pyrophosphatase	zinc	ribbon	domain
UPF0175	PF03683.8	gi|385804871|ref|YP_005841271.1|	-	2.1e-09	36.7	0.0	2.5e-09	36.4	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
DUF732	PF05305.9	gi|385804871|ref|YP_005841271.1|	-	0.017	15.1	0.0	0.018	15.0	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF732)
HTH_AraC	PF00165.18	gi|385804871|ref|YP_005841271.1|	-	0.023	14.5	0.0	0.031	14.1	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
Helicase_C_2	PF13307.1	gi|385804872|ref|YP_005841272.1|	-	3.2e-21	75.9	0.0	4.8e-21	75.4	0.0	1.3	1	0	0	1	1	1	1	Helicase	C-terminal	domain
DEAD_2	PF06733.10	gi|385804872|ref|YP_005841272.1|	-	7.1e-07	28.8	0.0	1.2e-06	28.0	0.0	1.3	1	0	0	1	1	1	1	DEAD_2
ResIII	PF04851.10	gi|385804872|ref|YP_005841272.1|	-	1.8e-05	24.6	0.0	0.0043	16.9	0.0	2.3	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|385804872|ref|YP_005841272.1|	-	0.00012	21.6	0.0	0.067	12.6	0.0	2.4	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
AAA_19	PF13245.1	gi|385804872|ref|YP_005841272.1|	-	0.00027	20.6	0.1	0.00076	19.1	0.1	1.8	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_22	PF13401.1	gi|385804872|ref|YP_005841272.1|	-	0.00095	19.3	0.0	0.0084	16.2	0.0	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.1	gi|385804872|ref|YP_005841272.1|	-	0.0021	17.6	0.3	1.4	8.4	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
AAA_10	PF12846.2	gi|385804872|ref|YP_005841272.1|	-	0.012	15.1	0.3	2.5	7.4	0.0	2.4	2	0	0	2	2	2	0	AAA-like	domain
DXP_redisom_C	PF08436.7	gi|385804872|ref|YP_005841272.1|	-	0.029	14.2	0.0	0.095	12.5	0.0	1.8	2	0	0	2	2	2	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase	C-terminal
AAA_16	PF13191.1	gi|385804872|ref|YP_005841272.1|	-	0.03	14.3	2.0	0.18	11.7	0.0	3.0	3	1	1	4	4	4	0	AAA	ATPase	domain
AAA	PF00004.24	gi|385804872|ref|YP_005841272.1|	-	0.16	12.2	0.0	1.4	9.1	0.0	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
PhoH	PF02562.11	gi|385804872|ref|YP_005841272.1|	-	0.16	11.1	0.0	0.31	10.2	0.0	1.5	1	0	0	1	1	1	0	PhoH-like	protein
Mg_chelatase	PF01078.16	gi|385804872|ref|YP_005841272.1|	-	0.16	11.0	0.0	0.28	10.2	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
DUF4428	PF14471.1	gi|385804873|ref|YP_005841273.1|	-	0.055	13.2	0.3	0.093	12.4	0.0	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4428)
PHP	PF02811.14	gi|385804877|ref|YP_005841277.1|	-	3.4e-13	49.7	0.0	9.1e-13	48.3	0.0	1.6	1	1	0	1	1	1	1	PHP	domain
YyzF	PF14116.1	gi|385804878|ref|YP_005841278.1|	-	0.66	9.9	6.1	0.27	11.2	1.3	2.0	2	0	0	2	2	2	0	YyzF-like	protein
PyrI_C	PF02748.10	gi|385804878|ref|YP_005841278.1|	-	0.69	9.3	2.8	0.91	9.0	1.1	1.8	1	1	1	2	2	2	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
DDE_Tnp_IS1595	PF12762.2	gi|385804879|ref|YP_005841279.1|	-	1.9e-23	82.9	0.0	3e-23	82.3	0.0	1.2	1	0	0	1	1	1	1	ISXO2-like	transposase	domain
Zn_Tnp_IS1595	PF12760.2	gi|385804879|ref|YP_005841279.1|	-	1.5e-10	40.6	4.8	2.9e-10	39.7	3.3	1.5	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Zn_Tnp_IS1	PF03811.8	gi|385804879|ref|YP_005841279.1|	-	1.3e-05	24.5	6.4	3.3e-05	23.2	4.5	1.7	1	0	0	1	1	1	1	InsA	N-terminal	domain
DUF2089	PF09862.4	gi|385804879|ref|YP_005841279.1|	-	0.026	14.3	0.0	0.04	13.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2089)
Auxin_inducible	PF02519.9	gi|385804879|ref|YP_005841279.1|	-	0.035	14.1	0.0	0.063	13.3	0.0	1.3	1	0	0	1	1	1	0	Auxin	responsive	protein
zf-ISL3	PF14690.1	gi|385804879|ref|YP_005841279.1|	-	0.11	12.6	8.7	0.19	11.7	0.7	2.8	2	1	1	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-Dof	PF02701.10	gi|385804879|ref|YP_005841279.1|	-	0.11	12.4	3.8	0.2	11.5	2.6	1.4	1	0	0	1	1	1	0	Dof	domain,	zinc	finger
Zn-ribbon_8	PF09723.5	gi|385804879|ref|YP_005841279.1|	-	0.55	10.2	4.7	6.7	6.7	0.4	2.5	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-C2H2_6	PF13912.1	gi|385804879|ref|YP_005841279.1|	-	5	7.1	6.8	1.1	9.2	0.2	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
SNARE_assoc	PF09335.6	gi|385804880|ref|YP_005841280.1|	-	1.2e-10	41.7	1.5	1.7e-10	41.1	1.0	1.3	1	1	0	1	1	1	1	SNARE	associated	Golgi	protein
ALAD	PF00490.16	gi|385804881|ref|YP_005841281.1|	-	1.1e-137	458.2	0.8	1.3e-137	458.0	0.6	1.0	1	0	0	1	1	1	1	Delta-aminolevulinic	acid	dehydratase
Ammonium_transp	PF00909.16	gi|385804882|ref|YP_005841282.1|	-	2e-96	322.8	41.8	2.3e-96	322.6	29.0	1.0	1	0	0	1	1	1	1	Ammonium	Transporter	Family
PsbY	PF06298.6	gi|385804882|ref|YP_005841282.1|	-	0.033	13.7	1.1	1.4	8.5	0.0	2.9	2	0	0	2	2	2	0	Photosystem	II	protein	Y	(PsbY)
P-II	PF00543.17	gi|385804883|ref|YP_005841283.1|	-	2.6e-32	111.3	0.0	3.1e-32	111.0	0.0	1.1	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
Aminotran_3	PF00202.16	gi|385804885|ref|YP_005841285.1|	-	1e-64	218.5	0.0	1.3e-64	218.1	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.16	gi|385804885|ref|YP_005841285.1|	-	0.0036	16.2	0.0	0.0086	15.0	0.0	1.5	2	0	0	2	2	2	1	Aminotransferase	class	I	and	II
Porphobil_deam	PF01379.15	gi|385804886|ref|YP_005841286.1|	-	5.5e-60	201.9	0.7	3.2e-48	163.5	0.1	2.1	2	0	0	2	2	2	2	Porphobilinogen	deaminase,	dipyromethane	cofactor	binding	domain
Porphobil_deamC	PF03900.10	gi|385804886|ref|YP_005841286.1|	-	2.8e-10	40.1	0.0	6.8e-10	38.9	0.0	1.7	1	0	0	1	1	1	1	Porphobilinogen	deaminase,	C-terminal	domain
Uds1	PF15456.1	gi|385804886|ref|YP_005841286.1|	-	0.0012	18.8	1.9	0.0012	18.8	1.3	1.8	2	0	0	2	2	2	1	Up-regulated	During	Septation
TP_methylase	PF00590.15	gi|385804887|ref|YP_005841287.1|	-	5.3e-47	160.2	0.7	6.3e-47	159.9	0.5	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
HEM4	PF02602.10	gi|385804888|ref|YP_005841288.1|	-	4.5e-44	150.4	1.1	5.7e-44	150.0	0.7	1.0	1	0	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
DUF4538	PF15061.1	gi|385804889|ref|YP_005841289.1|	-	0.27	10.5	0.1	0.27	10.5	0.1	2.5	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4538)
Tmemb_170	PF10190.4	gi|385804889|ref|YP_005841289.1|	-	5.2	7.1	10.5	0.58	10.2	4.1	1.7	2	0	0	2	2	2	0	Putative	transmembrane	protein	170
Cys_Met_Meta_PP	PF01053.15	gi|385804890|ref|YP_005841290.1|	-	5.2e-136	452.9	0.0	5.9e-136	452.7	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_1_2	PF00155.16	gi|385804890|ref|YP_005841290.1|	-	3.1e-06	26.3	0.0	4.5e-06	25.8	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.12	gi|385804890|ref|YP_005841290.1|	-	1.8e-05	23.9	0.7	3.4e-05	23.0	0.5	1.4	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_5	PF00266.14	gi|385804890|ref|YP_005841290.1|	-	0.00015	20.6	1.0	0.00026	19.8	0.0	1.8	2	0	0	2	2	2	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.16	gi|385804890|ref|YP_005841290.1|	-	0.0023	17.1	0.1	0.0045	16.1	0.1	1.7	1	1	0	1	1	1	1	Beta-eliminating	lyase
SLA_LP_auto_ag	PF05889.8	gi|385804890|ref|YP_005841290.1|	-	0.08	11.4	0.0	0.12	10.8	0.0	1.3	1	0	0	1	1	1	0	Soluble	liver	antigen/liver	pancreas	antigen	(SLA/LP	autoantigen)
PHO4	PF01384.15	gi|385804891|ref|YP_005841291.1|	-	2.3e-72	243.3	28.2	3.1e-72	242.9	19.5	1.1	1	0	0	1	1	1	1	Phosphate	transporter	family
Fer2	PF00111.22	gi|385804892|ref|YP_005841292.1|	-	7.8e-15	54.3	0.3	1.3e-14	53.7	0.2	1.3	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.1	gi|385804892|ref|YP_005841292.1|	-	0.055	13.2	0.1	0.11	12.3	0.1	1.5	1	1	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
Auto_anti-p27	PF06677.7	gi|385804893|ref|YP_005841293.1|	-	2.9e-18	65.3	0.7	4e-18	64.8	0.5	1.2	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
GFA	PF04828.9	gi|385804893|ref|YP_005841293.1|	-	0.004	17.0	2.0	0.086	12.7	0.0	2.6	1	1	1	2	2	2	1	Glutathione-dependent	formaldehyde-activating	enzyme
DZR	PF12773.2	gi|385804893|ref|YP_005841293.1|	-	0.0085	15.8	2.1	0.018	14.8	1.4	1.5	1	0	0	1	1	1	1	Double	zinc	ribbon
DUF3279	PF11682.3	gi|385804893|ref|YP_005841293.1|	-	0.03	13.8	0.9	0.058	12.9	0.2	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3279)
HypA	PF01155.14	gi|385804893|ref|YP_005841293.1|	-	0.054	13.1	0.6	0.094	12.4	0.4	1.4	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Zn_Tnp_IS91	PF14319.1	gi|385804893|ref|YP_005841293.1|	-	0.054	12.9	1.1	0.11	11.9	0.7	1.5	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
zf-FPG_IleRS	PF06827.9	gi|385804893|ref|YP_005841293.1|	-	0.097	12.3	3.6	0.23	11.1	2.5	1.6	1	0	0	1	1	1	0	Zinc	finger	found	in	FPG	and	IleRS
zf-dskA_traR	PF01258.12	gi|385804893|ref|YP_005841293.1|	-	0.2	11.4	1.5	0.37	10.5	1.0	1.4	1	0	0	1	1	1	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
DUF605	PF04652.11	gi|385804893|ref|YP_005841293.1|	-	0.59	9.4	22.8	0.72	9.1	15.8	1.1	1	0	0	1	1	1	0	Vta1	like
zf-ribbon_3	PF13248.1	gi|385804893|ref|YP_005841293.1|	-	0.6	9.4	2.9	1.2	8.4	2.0	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
TFIIA	PF03153.8	gi|385804893|ref|YP_005841293.1|	-	2	8.2	22.1	2.5	7.8	15.3	1.3	1	0	0	1	1	1	0	Transcription	factor	IIA,	alpha/beta	subunit
DUF2116	PF09889.4	gi|385804893|ref|YP_005841293.1|	-	2.1	8.2	4.6	4.1	7.2	0.7	2.2	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
Macoilin	PF09726.4	gi|385804893|ref|YP_005841293.1|	-	2.4	6.3	26.5	2.9	6.0	18.4	1.1	1	0	0	1	1	1	0	Transmembrane	protein
Ldh_1_N	PF00056.18	gi|385804894|ref|YP_005841294.1|	-	8.6e-37	126.0	0.2	1.2e-36	125.6	0.1	1.2	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	NAD	binding	domain
Ldh_1_C	PF02866.13	gi|385804894|ref|YP_005841294.1|	-	2e-33	115.5	0.0	3.1e-33	114.9	0.0	1.3	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	alpha/beta	C-terminal	domain
Semialdhyde_dh	PF01118.19	gi|385804894|ref|YP_005841294.1|	-	0.094	13.0	0.1	0.17	12.1	0.1	1.4	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
DUF296	PF03479.10	gi|385804895|ref|YP_005841295.1|	-	1.3e-27	95.7	0.0	1.5e-27	95.5	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF296)
PolC_DP2	PF03833.8	gi|385804896|ref|YP_005841296.1|	-	0	1274.2	0.1	0	1273.0	0.1	1.6	1	1	0	1	1	1	1	DNA	polymerase	II	large	subunit	DP2
Hom_end	PF05204.9	gi|385804896|ref|YP_005841296.1|	-	2.7e-05	24.0	1.0	0.37	10.7	0.0	3.7	3	0	0	3	3	3	2	Homing	endonuclease
LAGLIDADG_3	PF14528.1	gi|385804896|ref|YP_005841296.1|	-	8.7e-05	22.6	0.0	0.0062	16.7	0.0	3.1	3	0	0	3	3	3	1	LAGLIDADG-like	domain
Hint	PF01079.15	gi|385804896|ref|YP_005841296.1|	-	0.0024	17.1	0.1	1.3	8.2	0.0	2.5	2	0	0	2	2	2	2	Hint	module
TerY-C	PF15616.1	gi|385804896|ref|YP_005841296.1|	-	2.1	8.2	6.8	34	4.3	4.7	2.5	1	1	0	1	1	1	0	TerY-C	metal	binding	domain
HAD_2	PF13419.1	gi|385804897|ref|YP_005841297.1|	-	8.4e-15	55.4	0.4	1.1e-14	55.1	0.3	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|385804897|ref|YP_005841297.1|	-	1e-09	37.9	0.0	2.1e-09	36.9	0.0	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.21	gi|385804897|ref|YP_005841297.1|	-	3.7e-05	24.2	0.0	0.0013	19.1	0.0	2.2	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Sulfatase	PF00884.18	gi|385804898|ref|YP_005841298.1|	-	5e-45	154.0	0.6	7e-45	153.5	0.4	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.17	gi|385804898|ref|YP_005841298.1|	-	1.9e-12	47.1	3.2	2.2e-05	23.9	0.6	2.4	2	1	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF1501	PF07394.7	gi|385804898|ref|YP_005841298.1|	-	0.11	11.3	1.3	0.17	10.6	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1501)
DUF229	PF02995.12	gi|385804898|ref|YP_005841298.1|	-	0.21	9.9	0.0	0.27	9.6	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF229)
NifU	PF01106.12	gi|385804899|ref|YP_005841299.1|	-	3.7e-10	39.4	0.1	5.4e-10	38.8	0.1	1.3	1	1	0	1	1	1	1	NifU-like	domain
FliT	PF05400.8	gi|385804900|ref|YP_005841300.1|	-	0.094	13.1	1.1	1.3	9.5	0.9	2.0	1	1	1	2	2	2	0	Flagellar	protein	FliT
Inhibitor_I42	PF09394.5	gi|385804900|ref|YP_005841300.1|	-	0.097	13.0	0.0	0.17	12.2	0.0	1.4	1	0	0	1	1	1	0	Chagasin	family	peptidase	inhibitor	I42
EST1	PF10374.4	gi|385804900|ref|YP_005841300.1|	-	0.14	12.1	0.9	0.21	11.5	0.6	1.4	1	1	0	1	1	1	0	Telomerase	activating	protein	Est1
DUF3437	PF11919.3	gi|385804901|ref|YP_005841301.1|	-	0.028	14.1	0.6	0.035	13.8	0.4	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3437)
7TMR-HDED	PF07697.6	gi|385804901|ref|YP_005841301.1|	-	0.058	13.1	1.0	0.063	12.9	0.7	1.0	1	0	0	1	1	1	0	7TM-HD	extracellular
TMF_TATA_bd	PF12325.3	gi|385804902|ref|YP_005841302.1|	-	0.038	13.7	3.5	0.047	13.4	0.6	1.9	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
PSK_trans_fac	PF07704.6	gi|529167411|ref|YP_005841303.2|	-	0.019	15.6	2.8	0.069	13.8	1.9	2.0	1	1	0	1	1	1	0	Rv0623-like	transcription	factor
DUF935	PF06074.7	gi|529167411|ref|YP_005841303.2|	-	0.043	12.5	1.0	0.048	12.3	0.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF935)
DUF2805	PF10985.3	gi|529167411|ref|YP_005841303.2|	-	0.063	13.2	0.3	0.11	12.4	0.0	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2805)
HTH_27	PF13463.1	gi|529167411|ref|YP_005841303.2|	-	0.17	12.2	0.5	0.76	10.1	0.0	2.2	3	0	0	3	3	3	0	Winged	helix	DNA-binding	domain
TSC22	PF01166.13	gi|385804906|ref|YP_005841306.1|	-	0.0049	16.8	0.6	0.008	16.1	0.4	1.3	1	0	0	1	1	1	1	TSC-22/dip/bun	family
DUF2564	PF10819.3	gi|385804906|ref|YP_005841306.1|	-	0.013	15.6	0.1	0.021	14.9	0.0	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2564)
DUF3832	PF12909.2	gi|385804906|ref|YP_005841306.1|	-	0.045	13.8	0.0	0.064	13.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3832)
YtxH	PF12732.2	gi|385804911|ref|YP_005841311.1|	-	0.1	12.9	2.4	4.1	7.8	0.4	2.6	2	1	0	2	2	2	0	YtxH-like	protein
Ycf1	PF05758.7	gi|385804911|ref|YP_005841311.1|	-	0.15	9.7	1.9	0.16	9.6	1.3	1.0	1	0	0	1	1	1	0	Ycf1
DUF1707	PF08044.6	gi|385804911|ref|YP_005841311.1|	-	0.23	11.2	0.1	0.23	11.2	0.1	2.8	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1707)
Flg_hook	PF02120.11	gi|385804911|ref|YP_005841311.1|	-	1.4	8.6	4.3	47	3.7	0.0	3.9	3	1	1	4	4	4	0	Flagellar	hook-length	control	protein	FliK
PRA-PH	PF01503.12	gi|385804911|ref|YP_005841311.1|	-	1.4	9.2	5.4	1.6	9.0	1.7	2.3	2	1	0	2	2	2	0	Phosphoribosyl-ATP	pyrophosphohydrolase
Stn1	PF10451.4	gi|385804911|ref|YP_005841311.1|	-	4.8	5.9	6.4	7.9	5.2	0.1	2.9	1	1	2	3	3	3	0	Telomere	regulation	protein	Stn1
Syntaxin-6_N	PF09177.6	gi|385804911|ref|YP_005841311.1|	-	9.6	6.6	8.8	10	6.6	2.8	2.8	1	1	2	3	3	3	0	Syntaxin	6,	N-terminal
NIR_SIR_ferr	PF03460.12	gi|385804913|ref|YP_005841313.1|	-	0.024	14.2	0.0	0.82	9.3	0.0	2.2	2	0	0	2	2	2	0	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
NTP_transf_5	PF14907.1	gi|385804914|ref|YP_005841314.1|	-	1.3e-06	27.9	0.0	2.2e-06	27.2	0.0	1.4	1	1	0	1	1	1	1	Uncharacterised	nucleotidyltransferase
DUF1814	PF08843.6	gi|385804914|ref|YP_005841314.1|	-	3.3e-06	27.0	0.5	1e-05	25.4	0.3	1.8	1	1	0	1	1	1	1	Nucleotidyl	transferase	of	unknown	function	(DUF1814)
Propep_M14	PF02244.11	gi|385804914|ref|YP_005841314.1|	-	0.001	18.6	0.1	0.0031	17.1	0.0	1.9	2	0	0	2	2	2	1	Carboxypeptidase	activation	peptide
NTP_transf_2	PF01909.18	gi|385804914|ref|YP_005841314.1|	-	0.036	14.3	0.1	0.1	12.9	0.0	1.8	2	0	0	2	2	2	0	Nucleotidyltransferase	domain
HTH_23	PF13384.1	gi|385804915|ref|YP_005841315.1|	-	0.00029	20.3	0.5	0.0016	18.0	0.0	2.4	2	1	1	3	3	3	1	Homeodomain-like	domain
Fe_dep_repress	PF01325.14	gi|385804915|ref|YP_005841315.1|	-	0.0014	18.4	0.0	0.0035	17.2	0.0	1.7	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.2	gi|385804915|ref|YP_005841315.1|	-	0.0018	17.9	0.2	0.0061	16.1	0.1	1.9	1	1	1	2	2	2	1	MarR	family
HTH_1	PF00126.22	gi|385804915|ref|YP_005841315.1|	-	0.0022	17.6	0.4	0.019	14.6	0.0	2.2	2	0	0	2	2	2	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
GntR	PF00392.16	gi|385804915|ref|YP_005841315.1|	-	0.0033	16.8	0.1	0.069	12.5	0.0	2.5	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
TrmB	PF01978.14	gi|385804915|ref|YP_005841315.1|	-	0.0043	16.7	0.1	0.01	15.4	0.0	1.7	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.15	gi|385804915|ref|YP_005841315.1|	-	0.0066	16.5	0.0	0.079	13.0	0.0	2.3	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_28	PF13518.1	gi|385804915|ref|YP_005841315.1|	-	0.0071	16.3	0.1	0.028	14.4	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_29	PF13551.1	gi|385804915|ref|YP_005841315.1|	-	0.019	15.1	0.2	0.041	14.0	0.0	1.6	2	0	0	2	2	2	0	Winged	helix-turn	helix
HTH_24	PF13412.1	gi|385804915|ref|YP_005841315.1|	-	0.025	13.9	0.0	0.038	13.3	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_30	PF13556.1	gi|385804915|ref|YP_005841315.1|	-	0.041	13.4	0.0	0.094	12.3	0.0	1.6	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
RPA_C	PF08784.6	gi|385804915|ref|YP_005841315.1|	-	0.085	13.2	0.0	0.2	12.0	0.0	1.6	2	0	0	2	2	2	0	Replication	protein	A	C	terminal
NTP_transf_2	PF01909.18	gi|385804917|ref|YP_005841317.1|	-	6.6e-09	35.9	0.1	6.6e-09	35.9	0.1	1.6	2	0	0	2	2	2	1	Nucleotidyltransferase	domain
HTH_11	PF08279.7	gi|385804917|ref|YP_005841317.1|	-	9.9e-07	28.3	0.8	1.5e-06	27.7	0.0	1.7	2	0	0	2	2	2	1	HTH	domain
HTH_IclR	PF09339.5	gi|385804917|ref|YP_005841317.1|	-	0.0011	18.5	0.0	0.0025	17.3	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.14	gi|385804917|ref|YP_005841317.1|	-	0.0095	15.6	0.0	0.017	14.8	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.16	gi|385804917|ref|YP_005841317.1|	-	0.034	13.5	0.0	0.077	12.4	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
MarR_2	PF12802.2	gi|385804917|ref|YP_005841317.1|	-	0.038	13.6	0.1	0.088	12.4	0.0	1.6	1	0	0	1	1	1	0	MarR	family
HTH_41	PF14502.1	gi|385804917|ref|YP_005841317.1|	-	0.067	12.8	0.0	0.14	11.7	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF294	PF03445.8	gi|385804917|ref|YP_005841317.1|	-	0.082	12.5	0.1	0.13	11.8	0.1	1.3	1	0	0	1	1	1	0	Putative	nucleotidyltransferase	DUF294
HTH_23	PF13384.1	gi|385804917|ref|YP_005841317.1|	-	0.12	12.0	0.0	0.24	11.1	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
SWIM	PF04434.12	gi|385804920|ref|YP_005841320.1|	-	0.0035	16.7	1.0	0.009	15.4	0.7	1.8	1	1	0	1	1	1	1	SWIM	zinc	finger
Antitoxin-MazE	PF04014.13	gi|385804921|ref|YP_005841321.1|	-	0.0065	16.1	0.3	0.01	15.5	0.2	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
DUF3714	PF12508.3	gi|385804921|ref|YP_005841321.1|	-	0.1	12.0	0.0	0.12	11.7	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3714)
Oligomerisation	PF02410.10	gi|385804921|ref|YP_005841321.1|	-	0.12	12.3	0.0	0.15	12.0	0.0	1.2	1	0	0	1	1	1	0	Oligomerisation	domain
zf-HC2	PF13490.1	gi|385804921|ref|YP_005841321.1|	-	0.17	11.8	0.2	0.32	10.9	0.2	1.4	1	0	0	1	1	1	0	Putative	zinc-finger
ABC_tran	PF00005.22	gi|385804925|ref|YP_005841325.1|	-	3.1e-35	121.4	0.0	4.6e-35	120.8	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385804925|ref|YP_005841325.1|	-	1.9e-10	41.2	0.1	6e-05	23.1	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|385804925|ref|YP_005841325.1|	-	0.00015	21.2	0.0	0.0004	19.8	0.0	1.7	2	0	0	2	2	1	1	P-loop	containing	region	of	AAA	domain
MobB	PF03205.9	gi|385804925|ref|YP_005841325.1|	-	0.00022	20.9	0.0	0.00036	20.2	0.0	1.4	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Arch_ATPase	PF01637.13	gi|385804925|ref|YP_005841325.1|	-	0.00054	19.7	0.0	0.00082	19.1	0.0	1.4	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_23	PF13476.1	gi|385804925|ref|YP_005841325.1|	-	0.00063	20.1	0.5	0.00091	19.5	0.4	1.6	1	1	0	1	1	1	1	AAA	domain
NB-ARC	PF00931.17	gi|385804925|ref|YP_005841325.1|	-	0.0017	17.2	0.6	0.003	16.4	0.1	1.6	2	0	0	2	2	2	1	NB-ARC	domain
DUF258	PF03193.11	gi|385804925|ref|YP_005841325.1|	-	0.0019	17.4	0.1	0.0033	16.6	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
NACHT	PF05729.7	gi|385804925|ref|YP_005841325.1|	-	0.0024	17.5	0.4	0.0042	16.7	0.3	1.4	1	0	0	1	1	1	1	NACHT	domain
AAA_10	PF12846.2	gi|385804925|ref|YP_005841325.1|	-	0.0025	17.3	0.1	0.05	13.0	0.0	2.0	2	0	0	2	2	2	1	AAA-like	domain
NTPase_1	PF03266.10	gi|385804925|ref|YP_005841325.1|	-	0.0026	17.4	0.3	0.0082	15.8	0.1	1.8	2	0	0	2	2	2	1	NTPase
AAA_22	PF13401.1	gi|385804925|ref|YP_005841325.1|	-	0.0029	17.7	0.4	0.025	14.7	0.3	2.1	1	1	0	1	1	1	1	AAA	domain
MMR_HSR1	PF01926.18	gi|385804925|ref|YP_005841325.1|	-	0.0031	17.4	0.2	0.0079	16.1	0.1	1.8	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
SMC_N	PF02463.14	gi|385804925|ref|YP_005841325.1|	-	0.0068	15.6	1.0	0.044	13.0	0.7	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_25	PF13481.1	gi|385804925|ref|YP_005841325.1|	-	0.0072	15.7	0.1	0.017	14.5	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.1	gi|385804925|ref|YP_005841325.1|	-	0.0076	15.8	0.2	0.021	14.3	0.1	1.7	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.24	gi|385804925|ref|YP_005841325.1|	-	0.01	16.0	0.1	0.028	14.6	0.0	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_15	PF13175.1	gi|385804925|ref|YP_005841325.1|	-	0.01	14.9	0.0	0.014	14.4	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
Miro	PF08477.8	gi|385804925|ref|YP_005841325.1|	-	0.013	15.9	0.0	0.026	14.9	0.0	1.5	1	0	0	1	1	1	0	Miro-like	protein
AAA_14	PF13173.1	gi|385804925|ref|YP_005841325.1|	-	0.015	15.2	0.0	0.028	14.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
ATP-synt_ab	PF00006.20	gi|385804925|ref|YP_005841325.1|	-	0.015	14.7	0.0	0.016	14.7	0.0	1.2	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_16	PF13191.1	gi|385804925|ref|YP_005841325.1|	-	0.016	15.2	0.0	0.025	14.5	0.0	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
ArgK	PF03308.11	gi|385804925|ref|YP_005841325.1|	-	0.017	13.9	0.2	0.027	13.2	0.1	1.2	1	0	0	1	1	1	0	ArgK	protein
AAA_18	PF13238.1	gi|385804925|ref|YP_005841325.1|	-	0.019	15.2	0.1	0.085	13.1	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
cobW	PF02492.14	gi|385804925|ref|YP_005841325.1|	-	0.023	14.1	0.5	0.043	13.2	0.1	1.6	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
T2SE	PF00437.15	gi|385804925|ref|YP_005841325.1|	-	0.026	13.4	0.1	0.04	12.8	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_17	PF13207.1	gi|385804925|ref|YP_005841325.1|	-	0.038	14.7	0.0	0.073	13.8	0.0	1.6	2	0	0	2	2	1	0	AAA	domain
Mg_chelatase	PF01078.16	gi|385804925|ref|YP_005841325.1|	-	0.048	12.8	0.1	8.1	5.5	0.0	2.1	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_5	PF07728.9	gi|385804925|ref|YP_005841325.1|	-	0.077	12.7	0.0	0.12	12.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
UPF0079	PF02367.12	gi|385804925|ref|YP_005841325.1|	-	0.095	12.3	0.2	0.17	11.4	0.1	1.4	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
ABC_ATPase	PF09818.4	gi|385804925|ref|YP_005841325.1|	-	0.11	11.0	0.5	1.5	7.2	0.2	2.1	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
AAA_24	PF13479.1	gi|385804925|ref|YP_005841325.1|	-	0.11	12.0	0.6	0.23	10.9	0.1	1.7	2	0	0	2	2	2	0	AAA	domain
DUF3584	PF12128.3	gi|385804925|ref|YP_005841325.1|	-	0.15	9.3	0.3	0.23	8.7	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
ABC_tran	PF00005.22	gi|385804926|ref|YP_005841326.1|	-	1.9e-31	109.2	0.0	2.9e-31	108.5	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385804926|ref|YP_005841326.1|	-	9.3e-09	35.6	0.3	0.00013	22.0	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|385804926|ref|YP_005841326.1|	-	8.8e-06	25.1	0.6	5.5e-05	22.4	0.4	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|385804926|ref|YP_005841326.1|	-	0.00025	20.5	0.0	0.00051	19.5	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|385804926|ref|YP_005841326.1|	-	0.00057	20.2	0.1	0.00083	19.7	0.1	1.4	1	1	0	1	1	1	1	AAA	domain
DUF258	PF03193.11	gi|385804926|ref|YP_005841326.1|	-	0.0021	17.2	0.0	0.0033	16.6	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_16	PF13191.1	gi|385804926|ref|YP_005841326.1|	-	0.0065	16.4	0.3	0.017	15.1	0.2	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_14	PF13173.1	gi|385804926|ref|YP_005841326.1|	-	0.033	14.0	0.0	0.13	12.1	0.0	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|385804926|ref|YP_005841326.1|	-	0.039	14.1	0.2	0.1	12.7	0.2	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|385804926|ref|YP_005841326.1|	-	0.079	12.3	0.0	0.18	11.1	0.0	1.5	1	0	0	1	1	1	0	AAA-like	domain
AAA_30	PF13604.1	gi|385804926|ref|YP_005841326.1|	-	0.088	12.3	0.1	0.2	11.2	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_15	PF13175.1	gi|385804926|ref|YP_005841326.1|	-	0.094	11.7	0.0	0.31	10.0	0.0	1.8	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_13	PF13166.1	gi|385804926|ref|YP_005841326.1|	-	0.13	10.7	0.0	0.68	8.3	0.0	2.0	1	1	1	2	2	2	0	AAA	domain
AAA_5	PF07728.9	gi|385804926|ref|YP_005841326.1|	-	0.14	11.8	0.3	0.68	9.6	0.0	2.1	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_17	PF13207.1	gi|385804926|ref|YP_005841326.1|	-	0.15	12.9	0.1	0.37	11.6	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
BPD_transp_2	PF02653.11	gi|385804927|ref|YP_005841327.1|	-	8.3e-34	116.7	40.6	1.2e-33	116.2	28.2	1.2	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.11	gi|385804928|ref|YP_005841328.1|	-	7.5e-39	133.2	39.7	8.9e-39	133.0	27.5	1.1	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
Peripla_BP_6	PF13458.1	gi|385804929|ref|YP_005841329.1|	-	1.4e-83	281.1	0.1	1.6e-83	280.8	0.1	1.0	1	0	0	1	1	1	1	Periplasmic	binding	protein
Peripla_BP_5	PF13433.1	gi|385804929|ref|YP_005841329.1|	-	2.8e-70	236.8	0.1	3.4e-70	236.6	0.1	1.0	1	0	0	1	1	1	1	Periplasmic	binding	protein	domain
TAT_signal	PF10518.4	gi|385804929|ref|YP_005841329.1|	-	0.37	10.8	5.9	0.87	9.7	4.1	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
NikR_C	PF08753.6	gi|385804930|ref|YP_005841330.1|	-	3.3e-23	81.3	2.1	4.5e-23	80.9	1.5	1.2	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.16	gi|385804930|ref|YP_005841330.1|	-	1.9e-05	24.3	0.0	3.3e-05	23.5	0.0	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_2	PF03693.9	gi|385804930|ref|YP_005841330.1|	-	0.017	15.2	0.0	0.047	13.8	0.0	1.8	1	1	0	1	1	1	0	Uncharacterised	protein	family	(UPF0156)
CbiM	PF01891.11	gi|385804931|ref|YP_005841331.1|	-	2.4e-59	200.3	22.7	2.7e-59	200.2	15.7	1.0	1	0	0	1	1	1	1	Cobalt	uptake	substrate-specific	transmembrane	region
DUF3816	PF12822.2	gi|385804931|ref|YP_005841331.1|	-	0.025	14.4	20.4	0.045	13.6	14.2	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3816)
PDGLE	PF13190.1	gi|385804932|ref|YP_005841332.1|	-	1.5e-12	47.0	2.3	1.9e-12	46.6	1.6	1.2	1	0	0	1	1	1	1	PDGLE	domain
CbiQ	PF02361.11	gi|385804933|ref|YP_005841333.1|	-	5.8e-27	94.7	12.3	8.1e-27	94.2	8.6	1.1	1	0	0	1	1	1	1	Cobalt	transport	protein
Cytochrom_B_N	PF00033.14	gi|385804933|ref|YP_005841333.1|	-	0.00085	18.7	2.2	0.0023	17.2	1.5	1.8	1	1	0	1	1	1	1	Cytochrome	b(N-terminal)/b6/petB
Ni_hydr_CYTB	PF01292.15	gi|385804933|ref|YP_005841333.1|	-	0.031	13.6	5.3	0.4	10.0	3.7	2.3	1	1	0	1	1	1	0	Prokaryotic	cytochrome	b561
ABC_tran	PF00005.22	gi|385804934|ref|YP_005841334.1|	-	5.2e-28	98.0	0.0	7e-28	97.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385804934|ref|YP_005841334.1|	-	2.5e-08	34.2	0.8	0.0012	18.9	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|385804934|ref|YP_005841334.1|	-	1.1e-05	24.7	0.1	0.1	11.8	0.1	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
SbcCD_C	PF13558.1	gi|385804934|ref|YP_005841334.1|	-	0.00023	21.0	0.1	0.0016	18.2	0.0	2.1	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_29	PF13555.1	gi|385804934|ref|YP_005841334.1|	-	0.00041	19.8	0.0	0.0011	18.4	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_17	PF13207.1	gi|385804934|ref|YP_005841334.1|	-	0.017	15.9	0.4	1	10.1	0.2	2.3	2	0	0	2	2	2	0	AAA	domain
T2SE	PF00437.15	gi|385804934|ref|YP_005841334.1|	-	0.041	12.7	0.4	0.28	10.0	0.1	2.1	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
FtsK_SpoIIIE	PF01580.13	gi|385804934|ref|YP_005841334.1|	-	0.081	12.3	0.0	0.15	11.5	0.0	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
Urease_beta	PF00699.15	gi|385804935|ref|YP_005841335.1|	-	5.7e-44	148.0	0.0	6.9e-44	147.7	0.0	1.1	1	0	0	1	1	1	1	Urease	beta	subunit
ROKNT	PF08067.6	gi|385804935|ref|YP_005841335.1|	-	0.025	14.3	2.0	0.031	14.1	0.2	1.9	2	0	0	2	2	2	0	ROKNT	(NUC014)	domain
Amidohydro_1	PF01979.15	gi|385804936|ref|YP_005841336.1|	-	9.2e-62	209.6	2.9	1.5e-61	208.8	2.0	1.3	1	0	0	1	1	1	1	Amidohydrolase	family
Urease_alpha	PF00449.15	gi|385804936|ref|YP_005841336.1|	-	2.7e-48	163.0	2.2	5.6e-48	162.0	1.5	1.6	1	0	0	1	1	1	1	Urease	alpha-subunit,	N-terminal	domain
Amidohydro_5	PF13594.1	gi|385804936|ref|YP_005841336.1|	-	4.6e-07	29.5	2.0	1.2e-06	28.2	1.4	1.7	1	0	0	1	1	1	1	Amidohydrolase
Amidohydro_4	PF13147.1	gi|385804936|ref|YP_005841336.1|	-	6.8e-07	29.5	1.0	0.0051	16.8	1.1	2.4	2	0	0	2	2	2	2	Amidohydrolase
Amidohydro_3	PF07969.6	gi|385804936|ref|YP_005841336.1|	-	1.8e-06	27.4	1.3	1.8e-06	27.4	0.9	2.5	1	1	1	2	2	2	1	Amidohydrolase	family
Pyocin_S	PF06958.7	gi|385804936|ref|YP_005841336.1|	-	0.021	15.1	0.0	0.038	14.3	0.0	1.4	1	0	0	1	1	1	0	S-type	Pyocin
Urease_gamma	PF00547.13	gi|385804937|ref|YP_005841337.1|	-	3.5e-43	145.6	0.1	4e-43	145.4	0.0	1.0	1	0	0	1	1	1	1	Urease,	gamma	subunit
DUF732	PF05305.9	gi|385804937|ref|YP_005841337.1|	-	0.05	13.6	0.0	0.064	13.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF732)
cobW	PF02492.14	gi|385804938|ref|YP_005841338.1|	-	2.3e-36	124.8	0.0	2.7e-36	124.6	0.0	1.0	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
ArgK	PF03308.11	gi|385804938|ref|YP_005841338.1|	-	1.9e-11	43.2	0.2	7.2e-06	24.9	0.0	2.1	2	0	0	2	2	2	2	ArgK	protein
MobB	PF03205.9	gi|385804938|ref|YP_005841338.1|	-	0.0054	16.4	0.0	0.013	15.2	0.0	1.7	1	1	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NTPase_1	PF03266.10	gi|385804938|ref|YP_005841338.1|	-	0.018	14.7	0.0	0.026	14.2	0.0	1.3	1	0	0	1	1	1	0	NTPase
AAA_18	PF13238.1	gi|385804938|ref|YP_005841338.1|	-	0.018	15.3	0.0	0.036	14.3	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_17	PF13207.1	gi|385804938|ref|YP_005841338.1|	-	0.022	15.5	0.0	0.044	14.5	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|385804938|ref|YP_005841338.1|	-	0.024	14.6	0.0	0.031	14.2	0.0	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
GTP_EFTU	PF00009.22	gi|385804938|ref|YP_005841338.1|	-	0.029	13.8	0.0	7.2	6.0	0.0	2.5	2	1	0	2	2	2	0	Elongation	factor	Tu	GTP	binding	domain
SRP54	PF00448.17	gi|385804938|ref|YP_005841338.1|	-	0.037	13.4	0.0	0.059	12.8	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
LpxK	PF02606.9	gi|385804938|ref|YP_005841338.1|	-	0.038	12.9	0.0	0.11	11.3	0.0	1.6	1	1	1	2	2	2	0	Tetraacyldisaccharide-1-P	4'-kinase
NACHT	PF05729.7	gi|385804938|ref|YP_005841338.1|	-	0.04	13.5	0.0	0.21	11.2	0.0	1.9	2	0	0	2	2	2	0	NACHT	domain
ATP_bind_1	PF03029.12	gi|385804938|ref|YP_005841338.1|	-	0.066	12.7	0.0	0.24	10.9	0.0	1.9	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
Miro	PF08477.8	gi|385804938|ref|YP_005841338.1|	-	0.067	13.6	0.0	0.38	11.2	0.0	2.0	2	0	0	2	2	2	0	Miro-like	protein
UPF0079	PF02367.12	gi|385804938|ref|YP_005841338.1|	-	0.069	12.7	0.1	0.16	11.5	0.0	1.6	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
Arch_ATPase	PF01637.13	gi|385804938|ref|YP_005841338.1|	-	0.069	12.8	0.0	0.086	12.5	0.0	1.2	1	0	0	1	1	1	0	Archaeal	ATPase
AAA_10	PF12846.2	gi|385804938|ref|YP_005841338.1|	-	0.079	12.3	0.0	0.11	11.8	0.0	1.2	1	0	0	1	1	1	0	AAA-like	domain
AAA_PrkA	PF08298.6	gi|385804938|ref|YP_005841338.1|	-	0.15	10.6	0.0	0.26	9.9	0.0	1.3	1	0	0	1	1	1	0	PrkA	AAA	domain
UreD	PF01774.12	gi|385804939|ref|YP_005841339.1|	-	1.1e-46	158.9	0.5	1.3e-46	158.6	0.3	1.1	1	0	0	1	1	1	1	UreD	urease	accessory	protein
UreE_N	PF02814.10	gi|385804940|ref|YP_005841340.1|	-	1.8e-11	43.4	1.1	3.9e-11	42.3	0.8	1.5	1	0	0	1	1	1	1	UreE	urease	accessory	protein,	N-terminal	domain
UreE_C	PF05194.7	gi|385804940|ref|YP_005841340.1|	-	0.00046	20.2	21.6	0.0074	16.3	14.9	2.6	1	1	0	1	1	1	1	UreE	urease	accessory	protein,	C-terminal	domain
DUF2796	PF10986.3	gi|385804940|ref|YP_005841340.1|	-	0.011	15.6	16.5	0.018	14.9	11.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2796)
Zip	PF02535.17	gi|385804940|ref|YP_005841340.1|	-	2.7	6.9	10.9	3.7	6.4	7.6	1.1	1	0	0	1	1	1	0	ZIP	Zinc	transporter
SelP_N	PF04592.9	gi|385804940|ref|YP_005841340.1|	-	4.5	6.5	13.9	7.8	5.8	9.7	1.4	1	0	0	1	1	1	0	Selenoprotein	P,	N	terminal	region
UreF	PF01730.11	gi|385804941|ref|YP_005841341.1|	-	3.1e-33	114.9	0.0	3.9e-33	114.6	0.0	1.1	1	0	0	1	1	1	1	UreF
AA_permease_2	PF13520.1	gi|385804942|ref|YP_005841342.1|	-	1.9e-43	148.6	46.9	2.4e-43	148.2	32.5	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|385804942|ref|YP_005841342.1|	-	2.2e-40	138.4	46.7	2.8e-40	138.1	32.4	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Usp	PF00582.21	gi|385804942|ref|YP_005841342.1|	-	6.1e-08	32.9	0.6	1.7e-07	31.5	0.3	1.9	2	0	0	2	2	2	1	Universal	stress	protein	family
Phage_HK97_TLTM	PF06120.6	gi|385804942|ref|YP_005841342.1|	-	0.51	9.6	1.3	5.6	6.2	0.0	2.3	2	0	0	2	2	2	0	Tail	length	tape	measure	protein
TrkA_N	PF02254.13	gi|385804943|ref|YP_005841343.1|	-	8.9e-14	51.4	0.2	1.2e-13	51.0	0.1	1.1	1	0	0	1	1	1	1	TrkA-N	domain
LMWPc	PF01451.16	gi|385804945|ref|YP_005841345.1|	-	2.6e-26	92.5	0.0	3e-26	92.3	0.0	1.0	1	0	0	1	1	1	1	Low	molecular	weight	phosphotyrosine	protein	phosphatase
Cons_hypoth698	PF03601.9	gi|385804947|ref|YP_005841347.1|	-	2.1e-65	220.3	17.8	2.5e-65	220.1	12.4	1.0	1	0	0	1	1	1	1	Conserved	hypothetical	protein	698
Metallophos_2	PF12850.2	gi|385804948|ref|YP_005841348.1|	-	4.2e-22	78.6	0.6	5.6e-22	78.2	0.4	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|385804948|ref|YP_005841348.1|	-	3e-05	23.5	0.2	0.01	15.2	0.0	2.4	1	1	1	2	2	2	2	Calcineurin-like	phosphoesterase
tRNA_lig_kinase	PF08303.6	gi|385804948|ref|YP_005841348.1|	-	0.033	14.0	0.0	0.045	13.6	0.0	1.1	1	0	0	1	1	1	0	tRNA	ligase	kinase	domain
Peptidase_M29	PF02073.10	gi|385804949|ref|YP_005841349.1|	-	5.1e-110	367.9	0.7	5.7e-110	367.7	0.5	1.0	1	0	0	1	1	1	1	Thermophilic	metalloprotease	(M29)
AsnC_trans_reg	PF01037.16	gi|385804950|ref|YP_005841350.1|	-	2.7e-11	43.0	0.0	4.9e-11	42.1	0.0	1.4	1	0	0	1	1	1	1	AsnC	family
HTH_24	PF13412.1	gi|385804950|ref|YP_005841350.1|	-	8.3e-10	37.9	0.1	2.3e-09	36.5	0.1	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|385804950|ref|YP_005841350.1|	-	1.4e-08	34.1	0.3	2.5e-08	33.2	0.2	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_5	PF01022.15	gi|385804950|ref|YP_005841350.1|	-	4.9e-07	29.3	0.3	9.3e-07	28.4	0.1	1.6	2	0	0	2	2	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|385804950|ref|YP_005841350.1|	-	6.7e-06	25.8	0.2	1.3e-05	24.9	0.1	1.5	2	0	0	2	2	1	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|385804950|ref|YP_005841350.1|	-	1.3e-05	24.6	0.1	2.8e-05	23.6	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.14	gi|385804950|ref|YP_005841350.1|	-	6.3e-05	22.5	0.2	0.00019	21.1	0.0	1.8	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_10	PF04967.7	gi|385804950|ref|YP_005841350.1|	-	0.00011	21.7	0.0	0.00025	20.5	0.0	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
GntR	PF00392.16	gi|385804950|ref|YP_005841350.1|	-	0.00018	20.8	0.2	0.0005	19.4	0.0	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_DeoR	PF08220.7	gi|385804950|ref|YP_005841350.1|	-	0.00036	20.0	0.2	0.0011	18.4	0.0	1.8	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
HTH_28	PF13518.1	gi|385804950|ref|YP_005841350.1|	-	0.00075	19.4	0.0	0.0019	18.1	0.0	1.6	2	0	0	2	2	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|385804950|ref|YP_005841350.1|	-	0.0019	17.7	0.1	0.0037	16.8	0.1	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|385804950|ref|YP_005841350.1|	-	0.0035	16.9	0.1	0.013	15.1	0.0	1.8	2	0	0	2	2	2	1	MarR	family
HTH_Tnp_ISL3	PF13542.1	gi|385804950|ref|YP_005841350.1|	-	0.0039	16.3	0.3	0.034	13.3	0.0	2.4	3	0	0	3	3	3	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_38	PF13936.1	gi|385804950|ref|YP_005841350.1|	-	0.0043	16.5	0.0	0.0087	15.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.17	gi|385804950|ref|YP_005841350.1|	-	0.006	16.2	0.0	0.048	13.3	0.0	2.1	2	0	0	2	2	2	1	MarR	family
Mga	PF05043.8	gi|385804950|ref|YP_005841350.1|	-	0.0078	16.4	0.0	0.023	14.9	0.0	1.7	2	0	0	2	2	2	1	Mga	helix-turn-helix	domain
HTH_23	PF13384.1	gi|385804950|ref|YP_005841350.1|	-	0.015	14.9	0.0	0.025	14.2	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
Fe_dep_repress	PF01325.14	gi|385804950|ref|YP_005841350.1|	-	0.025	14.5	0.2	0.08	12.9	0.0	1.9	2	1	1	3	3	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_41	PF14502.1	gi|385804950|ref|YP_005841350.1|	-	0.037	13.6	0.0	0.1	12.2	0.0	1.7	2	0	0	2	2	1	0	Helix-turn-helix	domain
HTH_1	PF00126.22	gi|385804950|ref|YP_005841350.1|	-	0.047	13.4	0.0	0.097	12.4	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_34	PF13601.1	gi|385804950|ref|YP_005841350.1|	-	0.1	12.6	0.2	0.29	11.1	0.0	1.8	2	0	0	2	2	1	0	Winged	helix	DNA-binding	domain
HTH_7	PF02796.10	gi|385804950|ref|YP_005841350.1|	-	0.11	12.3	0.0	0.37	10.7	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
Gln-synt_C	PF00120.19	gi|385804951|ref|YP_005841351.1|	-	3.2e-101	337.8	0.1	4.1e-101	337.4	0.1	1.1	1	0	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N	PF03951.14	gi|385804951|ref|YP_005841351.1|	-	1.4e-30	104.7	0.0	2.7e-30	103.7	0.0	1.5	1	0	0	1	1	1	1	Glutamine	synthetase,	beta-Grasp	domain
PAP2	PF01569.16	gi|385804952|ref|YP_005841352.1|	-	5.7e-17	61.6	12.6	5.7e-17	61.6	8.8	2.7	2	2	0	2	2	2	1	PAP2	superfamily
PAP2_C	PF14360.1	gi|385804952|ref|YP_005841352.1|	-	0.00032	20.8	2.2	0.00032	20.8	1.5	2.9	3	1	0	3	3	3	1	PAP2	superfamily	C-terminal
PAP2_3	PF14378.1	gi|385804952|ref|YP_005841352.1|	-	0.0012	18.3	10.6	0.0012	18.3	7.3	2.5	2	1	0	2	2	2	1	PAP2	superfamily
DUF641	PF04859.7	gi|385804953|ref|YP_005841353.1|	-	0.076	12.7	0.1	0.12	12.1	0.1	1.3	1	0	0	1	1	1	0	Plant	protein	of	unknown	function	(DUF641)
DUF4220	PF13968.1	gi|385804953|ref|YP_005841353.1|	-	0.23	10.5	3.1	0.11	11.6	0.2	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4220)
DUF812	PF05667.6	gi|385804953|ref|YP_005841353.1|	-	0.54	8.6	4.6	0.66	8.4	3.2	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
Pex14_N	PF04695.8	gi|385804953|ref|YP_005841353.1|	-	1.2	9.2	3.8	2.7	8.0	2.6	1.7	1	1	0	1	1	1	0	Peroxisomal	membrane	anchor	protein	(Pex14p)	conserved	region
Macoilin	PF09726.4	gi|385804953|ref|YP_005841353.1|	-	1.2	7.3	5.1	1.4	7.1	3.1	1.3	2	0	0	2	2	2	0	Transmembrane	protein
IncA	PF04156.9	gi|385804953|ref|YP_005841353.1|	-	2.8	7.4	9.1	4.9	6.7	0.2	2.2	2	0	0	2	2	2	0	IncA	protein
TRM	PF02005.11	gi|385804954|ref|YP_005841354.1|	-	2.2e-90	303.3	0.0	2.8e-90	302.9	0.0	1.0	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
PrmA	PF06325.8	gi|385804954|ref|YP_005841354.1|	-	6e-05	22.3	0.0	8.1e-05	21.8	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_26	PF13659.1	gi|385804954|ref|YP_005841354.1|	-	9.3e-05	22.4	0.6	0.00021	21.2	0.4	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|385804954|ref|YP_005841354.1|	-	0.00013	21.4	0.1	0.00022	20.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Zn-ribbon_8	PF09723.5	gi|385804954|ref|YP_005841354.1|	-	0.0013	18.5	1.5	0.0027	17.6	1.0	1.5	1	0	0	1	1	1	1	Zinc	ribbon	domain
Methyltransf_31	PF13847.1	gi|385804954|ref|YP_005841354.1|	-	0.0028	17.2	0.0	0.0045	16.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.10	gi|385804954|ref|YP_005841354.1|	-	0.038	13.3	0.0	0.059	12.7	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	protein	95
Methyltransf_18	PF12847.2	gi|385804954|ref|YP_005841354.1|	-	0.045	14.3	0.0	0.087	13.4	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
SWIM	PF04434.12	gi|385804955|ref|YP_005841355.1|	-	0.34	10.4	4.6	4.9	6.7	3.2	2.2	1	1	0	1	1	1	0	SWIM	zinc	finger
ADH_N	PF08240.7	gi|385804956|ref|YP_005841356.1|	-	1.4e-28	98.8	0.7	1.4e-28	98.8	0.5	1.9	3	0	0	3	3	3	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|385804956|ref|YP_005841356.1|	-	2.4e-20	72.4	0.3	4.7e-20	71.4	0.1	1.6	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|385804956|ref|YP_005841356.1|	-	1.1e-07	32.8	0.8	2.3e-07	31.7	0.6	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
BBS2_N	PF14781.1	gi|385804957|ref|YP_005841357.1|	-	0.074	12.6	0.0	0.15	11.7	0.0	1.4	1	0	0	1	1	1	0	Ciliary	BBSome	complex	subunit	2,	N-terminal
MF_alpha_N	PF05436.6	gi|385804957|ref|YP_005841357.1|	-	0.09	12.4	0.2	0.28	10.8	0.1	1.8	1	0	0	1	1	1	0	Mating	factor	alpha	precursor	N-terminus
PQQ_3	PF13570.1	gi|385804957|ref|YP_005841357.1|	-	9.5	6.6	11.8	8.3	6.8	0.0	4.4	4	1	0	5	5	5	0	PQQ-like	domain
Pribosyltran_N	PF13793.1	gi|385804958|ref|YP_005841358.1|	-	2.9e-22	78.6	0.0	4.8e-20	71.4	0.0	2.4	2	0	0	2	2	2	2	N-terminal	domain	of	ribose	phosphate	pyrophosphokinase
Pribosyltran	PF00156.22	gi|385804958|ref|YP_005841358.1|	-	2.1e-11	43.6	1.2	1.5e-09	37.6	0.1	2.8	2	1	0	2	2	2	1	Phosphoribosyl	transferase	domain
Pribosyl_synth	PF14572.1	gi|385804958|ref|YP_005841358.1|	-	8.8e-07	28.8	2.0	8.8e-07	28.8	1.4	1.6	2	0	0	2	2	2	1	Phosphoribosyl	synthetase-associated	domain
UPRTase	PF14681.1	gi|385804958|ref|YP_005841358.1|	-	0.00016	20.9	0.1	0.00028	20.1	0.0	1.4	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.1	gi|385804958|ref|YP_005841358.1|	-	0.0025	17.1	0.4	1.3	8.3	0.3	2.4	1	1	1	2	2	2	2	Phosphoribosyl	transferase
HIT	PF01230.18	gi|385804959|ref|YP_005841359.1|	-	2.3e-25	88.9	0.0	2.7e-25	88.7	0.0	1.1	1	0	0	1	1	1	1	HIT	domain
DcpS_C	PF11969.3	gi|385804959|ref|YP_005841359.1|	-	2.1e-14	53.7	0.0	2.6e-14	53.4	0.0	1.1	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.10	gi|385804959|ref|YP_005841359.1|	-	0.014	15.0	0.0	0.02	14.5	0.0	1.2	1	0	0	1	1	1	0	Protein	similar	to	CwfJ	C-terminus	1
AAA_31	PF13614.1	gi|385804960|ref|YP_005841360.1|	-	6.2e-09	35.9	0.0	9.2e-09	35.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.18	gi|385804960|ref|YP_005841360.1|	-	1.3e-08	34.4	0.1	2.1e-08	33.7	0.1	1.3	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MipZ	PF09140.6	gi|385804960|ref|YP_005841360.1|	-	1.9e-05	23.8	1.2	0.012	14.6	0.1	2.2	2	0	0	2	2	2	2	ATPase	MipZ
YhjQ	PF06564.7	gi|385804960|ref|YP_005841360.1|	-	0.0025	17.2	2.1	0.06	12.7	0.0	2.1	2	0	0	2	2	2	1	YhjQ	protein
Glyco_transf_4	PF13439.1	gi|385804960|ref|YP_005841360.1|	-	0.047	13.4	0.1	0.3	10.7	0.0	2.0	2	0	0	2	2	2	0	Glycosyltransferase	Family	4
Hydrolase_4	PF12146.3	gi|385804960|ref|YP_005841360.1|	-	0.082	12.7	0.0	0.17	11.7	0.0	1.6	1	0	0	1	1	1	0	Putative	lysophospholipase
TFIIB	PF00382.14	gi|385804962|ref|YP_005841362.1|	-	4.7e-36	122.4	0.5	5.1e-19	67.8	0.3	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|385804962|ref|YP_005841362.1|	-	2.4e-11	42.7	2.9	3.9e-11	42.0	2.0	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
DZR	PF12773.2	gi|385804962|ref|YP_005841362.1|	-	0.019	14.7	1.3	0.04	13.7	0.9	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
Cyclin_C	PF02984.14	gi|385804962|ref|YP_005841362.1|	-	0.023	14.6	0.5	0.72	9.7	0.0	2.2	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
zf-ribbon_3	PF13248.1	gi|385804962|ref|YP_005841362.1|	-	0.11	11.7	2.9	0.18	11.0	2.0	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.8	gi|385804962|ref|YP_005841362.1|	-	0.12	11.9	0.6	2.5	7.6	0.0	2.3	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
OrfB_Zn_ribbon	PF07282.6	gi|385804962|ref|YP_005841362.1|	-	0.21	11.2	1.5	0.28	10.8	0.4	1.7	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
Zn-ribbon_8	PF09723.5	gi|385804962|ref|YP_005841362.1|	-	1.7	8.6	4.0	0.87	9.5	0.3	2.2	1	1	1	2	2	2	0	Zinc	ribbon	domain
CbiA	PF01656.18	gi|385804964|ref|YP_005841364.1|	-	2e-15	56.7	0.1	2.8e-15	56.2	0.1	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|385804964|ref|YP_005841364.1|	-	1.8e-07	31.1	0.0	2.7e-07	30.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
MipZ	PF09140.6	gi|385804964|ref|YP_005841364.1|	-	9.3e-05	21.6	0.3	0.00036	19.6	0.2	1.8	1	1	0	1	1	1	1	ATPase	MipZ
AAA_17	PF13207.1	gi|385804964|ref|YP_005841364.1|	-	0.00015	22.5	0.1	0.00045	21.0	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|385804964|ref|YP_005841364.1|	-	0.0022	17.8	0.0	0.0049	16.7	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
ParA	PF10609.4	gi|385804964|ref|YP_005841364.1|	-	0.0024	17.7	1.2	0.0039	17.0	0.0	1.9	2	0	0	2	2	2	1	ParA/MinD	ATPase	like
YhjQ	PF06564.7	gi|385804964|ref|YP_005841364.1|	-	0.0029	17.0	0.1	0.0061	15.9	0.1	1.6	1	1	0	1	1	1	1	YhjQ	protein
Fer4_NifH	PF00142.13	gi|385804964|ref|YP_005841364.1|	-	0.0049	16.0	0.2	0.37	9.9	0.0	2.1	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_25	PF13481.1	gi|385804964|ref|YP_005841364.1|	-	0.023	14.1	2.0	0.065	12.6	1.4	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.1	gi|385804964|ref|YP_005841364.1|	-	0.12	11.9	0.0	0.15	11.6	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
ArsA_ATPase	PF02374.10	gi|385804964|ref|YP_005841364.1|	-	0.15	11.0	0.7	0.29	10.1	0.5	1.4	1	0	0	1	1	1	0	Anion-transporting	ATPase
Ferritin	PF00210.19	gi|385804966|ref|YP_005841366.1|	-	0.065	12.9	0.3	0.12	12.1	0.2	1.3	1	0	0	1	1	1	0	Ferritin-like	domain
DNA_pol3_alpha	PF07733.7	gi|385804966|ref|YP_005841366.1|	-	0.067	11.6	0.5	0.091	11.1	0.4	1.1	1	0	0	1	1	1	0	Bacterial	DNA	polymerase	III	alpha	subunit
LURAP	PF14854.1	gi|385804966|ref|YP_005841366.1|	-	0.098	12.3	0.1	0.21	11.3	0.1	1.6	1	0	0	1	1	1	0	Leucine	rich	adaptor	protein
HTH_25	PF13413.1	gi|385804968|ref|YP_005841368.1|	-	0.04	13.5	0.1	0.38	10.4	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
MCM	PF00493.18	gi|385804970|ref|YP_005841370.1|	-	3.9e-100	334.8	5.5	3.2e-58	197.0	0.0	5.2	5	0	0	5	5	5	4	MCM2/3/5	family
Intein_splicing	PF14890.1	gi|385804970|ref|YP_005841370.1|	-	1.2e-22	80.2	3.0	4.4e-06	25.8	0.1	7.4	8	0	0	8	8	8	6	Intein	splicing	domain
MCM_N	PF14551.1	gi|385804970|ref|YP_005841370.1|	-	2.8e-14	53.6	0.3	1.2e-13	51.6	0.2	2.1	1	0	0	1	1	1	1	MCM	N-terminal	domain
LAGLIDADG_3	PF14528.1	gi|385804970|ref|YP_005841370.1|	-	2.4e-11	43.7	0.0	5.7e-08	32.8	0.0	2.8	2	0	0	2	2	2	2	LAGLIDADG-like	domain
Hint	PF01079.15	gi|385804970|ref|YP_005841370.1|	-	3.7e-08	32.8	0.2	0.00071	18.8	0.0	4.0	4	0	0	4	4	4	2	Hint	module
Hom_end	PF05204.9	gi|385804970|ref|YP_005841370.1|	-	0.0032	17.4	5.9	0.3	11.0	0.0	3.5	4	0	0	4	4	4	2	Homing	endonuclease
BioY	PF02632.9	gi|385804972|ref|YP_005841372.1|	-	7.5e-38	129.5	16.9	1.3e-37	128.7	11.7	1.3	1	0	0	1	1	1	1	BioY	family
ABC_tran	PF00005.22	gi|385804973|ref|YP_005841373.1|	-	4.6e-29	101.4	0.0	1e-28	100.3	0.0	1.5	2	0	0	2	2	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385804973|ref|YP_005841373.1|	-	1.3e-08	35.1	0.0	0.0014	18.6	0.1	2.2	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|385804973|ref|YP_005841373.1|	-	2.3e-07	30.2	0.0	2.8e-06	26.7	0.0	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.1	gi|385804973|ref|YP_005841373.1|	-	4.2e-05	23.6	0.0	7.8e-05	22.7	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_15	PF13175.1	gi|385804973|ref|YP_005841373.1|	-	0.00039	19.5	0.0	0.32	10.0	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_29	PF13555.1	gi|385804973|ref|YP_005841373.1|	-	0.00055	19.4	0.1	0.0011	18.4	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_28	PF13521.1	gi|385804973|ref|YP_005841373.1|	-	0.0015	18.5	0.0	0.0027	17.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|385804973|ref|YP_005841373.1|	-	0.0015	17.9	0.3	1	8.7	0.1	2.2	2	0	0	2	2	2	2	AAA-like	domain
SbcCD_C	PF13558.1	gi|385804973|ref|YP_005841373.1|	-	0.0027	17.5	0.3	0.024	14.5	0.2	2.1	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_23	PF13476.1	gi|385804973|ref|YP_005841373.1|	-	0.0033	17.7	0.1	0.0045	17.3	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_13	PF13166.1	gi|385804973|ref|YP_005841373.1|	-	0.0036	15.8	0.0	0.011	14.2	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
NACHT	PF05729.7	gi|385804973|ref|YP_005841373.1|	-	0.0092	15.6	0.0	0.016	14.8	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
AAA_22	PF13401.1	gi|385804973|ref|YP_005841373.1|	-	0.011	15.8	0.1	0.035	14.2	0.0	1.9	2	1	0	2	2	2	0	AAA	domain
AAA_19	PF13245.1	gi|385804973|ref|YP_005841373.1|	-	0.015	14.9	0.1	0.036	13.7	0.1	1.7	1	0	0	1	1	1	0	Part	of	AAA	domain
Miro	PF08477.8	gi|385804973|ref|YP_005841373.1|	-	0.019	15.4	0.0	0.031	14.7	0.0	1.4	1	0	0	1	1	1	0	Miro-like	protein
DUF258	PF03193.11	gi|385804973|ref|YP_005841373.1|	-	0.019	14.1	0.0	0.029	13.5	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
Etmic-2	PF06670.6	gi|385804973|ref|YP_005841373.1|	-	0.022	13.5	0.1	0.036	12.8	0.0	1.3	1	0	0	1	1	1	0	Microneme	protein	Etmic-2
NB-ARC	PF00931.17	gi|385804973|ref|YP_005841373.1|	-	0.025	13.4	0.0	0.037	12.8	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
MobB	PF03205.9	gi|385804973|ref|YP_005841373.1|	-	0.027	14.1	0.1	0.094	12.4	0.0	1.8	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_30	PF13604.1	gi|385804973|ref|YP_005841373.1|	-	0.032	13.8	0.0	0.052	13.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|385804973|ref|YP_005841373.1|	-	0.034	13.8	0.0	0.099	12.3	0.0	1.9	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
T2SE	PF00437.15	gi|385804973|ref|YP_005841373.1|	-	0.046	12.6	0.2	0.57	9.0	0.0	2.3	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
AAA_14	PF13173.1	gi|385804973|ref|YP_005841373.1|	-	0.05	13.4	0.0	0.088	12.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
cobW	PF02492.14	gi|385804973|ref|YP_005841373.1|	-	0.054	12.9	0.2	0.11	11.9	0.0	1.6	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_17	PF13207.1	gi|385804973|ref|YP_005841373.1|	-	0.061	14.1	0.2	0.2	12.4	0.1	1.8	2	1	0	2	2	2	0	AAA	domain
AAA_33	PF13671.1	gi|385804973|ref|YP_005841373.1|	-	0.063	13.1	0.0	0.12	12.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.1	gi|385804973|ref|YP_005841373.1|	-	0.069	12.5	0.1	0.28	10.5	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
KaiC	PF06745.8	gi|385804973|ref|YP_005841373.1|	-	0.069	12.2	0.0	0.099	11.7	0.0	1.3	1	0	0	1	1	1	0	KaiC
FtsK_SpoIIIE	PF01580.13	gi|385804973|ref|YP_005841373.1|	-	0.094	12.1	0.0	0.19	11.1	0.0	1.5	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
UPF0079	PF02367.12	gi|385804973|ref|YP_005841373.1|	-	0.094	12.3	0.0	0.17	11.5	0.0	1.4	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
PduV-EutP	PF10662.4	gi|385804973|ref|YP_005841373.1|	-	0.13	11.7	0.0	0.33	10.4	0.0	1.7	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
G-alpha	PF00503.15	gi|385804973|ref|YP_005841373.1|	-	0.14	10.7	0.0	0.2	10.2	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
DUF3584	PF12128.3	gi|385804973|ref|YP_005841373.1|	-	0.2	8.9	0.0	0.27	8.5	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
CbiQ	PF02361.11	gi|385804974|ref|YP_005841374.1|	-	7e-13	48.6	11.7	7e-13	48.6	8.1	1.7	2	1	0	2	2	2	1	Cobalt	transport	protein
Fer4_7	PF12838.2	gi|385804975|ref|YP_005841375.1|	-	2.5e-13	50.1	21.0	1.1e-08	35.3	4.0	1.7	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|385804975|ref|YP_005841375.1|	-	1.1e-12	46.9	12.5	7.3e-07	28.5	2.3	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|385804975|ref|YP_005841375.1|	-	2e-10	40.7	4.8	2.9e-10	40.2	3.4	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|385804975|ref|YP_005841375.1|	-	4.1e-09	35.9	15.5	3.2e-05	23.5	3.8	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|385804975|ref|YP_005841375.1|	-	3.4e-08	33.1	18.3	2e-06	27.5	5.4	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|385804975|ref|YP_005841375.1|	-	8.9e-08	31.8	7.0	1.4e-07	31.2	4.9	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|385804975|ref|YP_005841375.1|	-	9.1e-08	31.8	7.5	0.00023	21.2	1.4	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|385804975|ref|YP_005841375.1|	-	1.9e-07	30.6	10.1	0.0016	18.2	0.7	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|385804975|ref|YP_005841375.1|	-	9.8e-07	28.7	9.8	6.4e-06	26.1	3.5	1.5	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|385804975|ref|YP_005841375.1|	-	6.1e-06	26.8	5.9	0.00029	21.5	0.8	2.5	2	1	1	3	3	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_18	PF13746.1	gi|385804975|ref|YP_005841375.1|	-	9.1e-06	26.0	4.0	0.0016	18.7	0.8	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|385804975|ref|YP_005841375.1|	-	2.3e-05	24.6	1.0	0.1	12.9	0.3	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|385804975|ref|YP_005841375.1|	-	3.3e-05	24.1	11.9	0.0047	17.3	3.1	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.1	gi|385804975|ref|YP_005841375.1|	-	0.0024	18.2	14.6	0.038	14.3	10.1	2.5	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_15	PF13459.1	gi|385804975|ref|YP_005841375.1|	-	0.0072	16.8	14.0	0.4	11.2	9.7	2.5	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
GATase	PF00117.23	gi|385804976|ref|YP_005841376.1|	-	1.4e-24	86.6	0.0	1.9e-24	86.2	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|385804976|ref|YP_005841376.1|	-	4.7e-10	39.2	0.1	2.7e-09	36.7	0.0	2.1	1	1	0	1	1	1	1	Peptidase	C26
HTS	PF04204.11	gi|385804976|ref|YP_005841376.1|	-	0.00042	19.1	0.0	0.00091	18.0	0.0	1.5	1	1	1	2	2	2	1	Homoserine	O-succinyltransferase
Abhydrolase_6	PF12697.2	gi|385804977|ref|YP_005841377.1|	-	4.7e-33	114.9	4.9	5.4e-33	114.7	3.4	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.15	gi|385804977|ref|YP_005841377.1|	-	4.4e-19	68.9	0.1	9.2e-19	67.9	0.0	1.5	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_5	PF12695.2	gi|385804977|ref|YP_005841377.1|	-	9.1e-14	51.4	0.3	3e-13	49.7	0.2	1.7	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_4	PF08386.5	gi|385804977|ref|YP_005841377.1|	-	0.00057	19.7	0.0	0.001	18.9	0.0	1.3	1	0	0	1	1	1	1	TAP-like	protein
Peptidase_S15	PF02129.13	gi|385804977|ref|YP_005841377.1|	-	0.0012	18.2	0.3	0.5	9.7	0.0	2.1	2	0	0	2	2	2	2	X-Pro	dipeptidyl-peptidase	(S15	family)
Hydrolase_4	PF12146.3	gi|385804977|ref|YP_005841377.1|	-	0.037	13.8	0.0	0.11	12.4	0.0	1.8	2	0	0	2	2	2	0	Putative	lysophospholipase
tRNA-synt_2c	PF01411.14	gi|385804978|ref|YP_005841378.1|	-	4.9e-108	361.8	0.0	6.4e-108	361.4	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
tRNA_SAD	PF07973.9	gi|385804978|ref|YP_005841378.1|	-	3.8e-13	49.0	1.7	8.1e-13	48.0	1.2	1.6	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
DHHA1	PF02272.14	gi|385804978|ref|YP_005841378.1|	-	1.5e-10	40.5	3.7	3.5e-10	39.4	2.6	1.6	1	0	0	1	1	1	1	DHHA1	domain
Rep_fac_C	PF08542.6	gi|385804979|ref|YP_005841379.1|	-	4.6e-21	74.5	0.0	1e-20	73.4	0.0	1.6	1	0	0	1	1	1	1	Replication	factor	C	C-terminal	domain
DNA_pol3_delta2	PF13177.1	gi|385804979|ref|YP_005841379.1|	-	1.9e-15	56.8	0.0	8.8e-14	51.4	0.0	2.4	2	0	0	2	2	2	1	DNA	polymerase	III,	delta	subunit
AAA	PF00004.24	gi|385804979|ref|YP_005841379.1|	-	1.5e-09	38.1	3.4	1.7e-08	34.7	0.0	3.2	3	0	0	3	3	3	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DNA_pol3_delta	PF06144.8	gi|385804979|ref|YP_005841379.1|	-	2e-06	27.4	0.0	4.6e-06	26.2	0.0	1.5	1	0	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
Rad17	PF03215.10	gi|385804979|ref|YP_005841379.1|	-	6.5e-06	25.1	0.0	0.068	11.8	0.0	2.2	2	0	0	2	2	2	2	Rad17	cell	cycle	checkpoint	protein
RuvB_N	PF05496.7	gi|385804979|ref|YP_005841379.1|	-	0.00063	18.8	0.1	0.024	13.6	0.0	2.9	3	0	0	3	3	3	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_16	PF13191.1	gi|385804979|ref|YP_005841379.1|	-	0.002	18.1	0.0	3	7.7	0.0	2.6	2	0	0	2	2	2	2	AAA	ATPase	domain
Intein_splicing	PF14890.1	gi|385804979|ref|YP_005841379.1|	-	0.0048	15.8	0.0	0.34	9.7	0.0	2.4	2	0	0	2	2	2	1	Intein	splicing	domain
AAA_22	PF13401.1	gi|385804979|ref|YP_005841379.1|	-	0.0077	16.3	0.1	0.14	12.2	0.0	2.7	2	0	0	2	2	2	1	AAA	domain
Acetyltransf_7	PF13508.1	gi|385804980|ref|YP_005841380.1|	-	6.9e-08	32.5	0.0	1.2e-07	31.7	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.19	gi|385804980|ref|YP_005841380.1|	-	0.0019	18.1	0.0	0.0048	16.8	0.0	1.6	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	family
PGM_PMM_I	PF02878.11	gi|385804981|ref|YP_005841381.1|	-	3.2e-37	127.0	0.0	5.7e-37	126.2	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.11	gi|385804981|ref|YP_005841381.1|	-	2.6e-25	88.7	0.1	7.1e-25	87.3	0.1	1.7	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_III	PF02880.11	gi|385804981|ref|YP_005841381.1|	-	1.9e-23	82.6	0.1	3.7e-23	81.7	0.0	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_IV	PF00408.15	gi|385804981|ref|YP_005841381.1|	-	5.1e-14	52.0	0.3	1.5e-13	50.5	0.0	1.9	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
GIY-YIG	PF01541.19	gi|385804982|ref|YP_005841382.1|	-	5e-14	52.4	1.5	6e-14	52.1	1.0	1.1	1	0	0	1	1	1	1	GIY-YIG	catalytic	domain
T5orf172	PF10544.4	gi|385804982|ref|YP_005841382.1|	-	0.0038	17.5	0.6	0.0054	17.0	0.4	1.3	1	1	0	1	1	1	1	T5orf172	domain
MUG113	PF13455.1	gi|385804982|ref|YP_005841382.1|	-	0.016	15.6	0.3	0.034	14.5	0.2	1.7	1	1	0	1	1	1	0	Meiotically	up-regulated	gene	113
Rho_N	PF07498.7	gi|385804982|ref|YP_005841382.1|	-	0.13	12.0	0.2	0.18	11.5	0.2	1.2	1	0	0	1	1	1	0	Rho	termination	factor,	N-terminal	domain
SurE	PF01975.12	gi|385804983|ref|YP_005841383.1|	-	8.8e-45	152.4	0.0	1.1e-44	152.0	0.0	1.1	1	0	0	1	1	1	1	Survival	protein	SurE
DZR	PF12773.2	gi|385804984|ref|YP_005841384.1|	-	0.0011	18.7	0.5	0.0013	18.5	0.3	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
PhnA_Zn_Ribbon	PF08274.7	gi|385804984|ref|YP_005841384.1|	-	0.002	17.8	0.2	0.0056	16.4	0.2	1.6	1	1	0	1	1	1	1	PhnA	Zinc-Ribbon
zf-ribbon_3	PF13248.1	gi|385804984|ref|YP_005841384.1|	-	0.0056	15.8	1.6	0.28	10.4	0.1	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
ATPase-cat_bd	PF12156.3	gi|385804984|ref|YP_005841384.1|	-	0.013	15.9	0.5	0.014	15.9	0.3	1.1	1	0	0	1	1	1	0	Putative	metal-binding	domain	of	cation	transport	ATPase
OrfB_Zn_ribbon	PF07282.6	gi|385804984|ref|YP_005841384.1|	-	0.014	14.9	0.6	0.019	14.5	0.4	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
C1_1	PF00130.17	gi|385804984|ref|YP_005841384.1|	-	0.017	14.8	0.3	0.022	14.4	0.2	1.2	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
TerY-C	PF15616.1	gi|385804984|ref|YP_005841384.1|	-	0.032	14.1	0.3	0.035	14.0	0.2	1.1	1	0	0	1	1	1	0	TerY-C	metal	binding	domain
zinc_ribbon_2	PF13240.1	gi|385804984|ref|YP_005841384.1|	-	0.035	13.5	3.9	0.21	11.1	2.7	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
Ogr_Delta	PF04606.7	gi|385804984|ref|YP_005841384.1|	-	0.057	13.0	2.5	1.3	8.6	0.4	2.2	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
Zn_Tnp_IS1595	PF12760.2	gi|385804984|ref|YP_005841384.1|	-	0.075	12.8	3.2	0.97	9.2	2.1	2.0	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|385804984|ref|YP_005841384.1|	-	0.091	12.4	1.9	0.31	10.7	0.0	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
Arc_trans_TRASH	PF08394.5	gi|385804984|ref|YP_005841384.1|	-	0.11	12.6	0.6	0.39	10.9	0.4	1.8	1	1	0	1	1	1	0	Archaeal	TRASH	domain
zf-ISL3	PF14690.1	gi|385804984|ref|YP_005841384.1|	-	0.14	12.2	0.5	15	5.6	0.0	2.2	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Lar_restr_allev	PF14354.1	gi|385804984|ref|YP_005841384.1|	-	0.18	12.1	1.9	0.29	11.4	1.3	1.4	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
zinc_ribbon_5	PF13719.1	gi|385804984|ref|YP_005841384.1|	-	0.2	11.2	2.9	0.37	10.4	0.0	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
Nudix_N_2	PF14803.1	gi|385804984|ref|YP_005841384.1|	-	0.21	11.3	1.1	0.96	9.1	0.7	1.9	1	1	0	1	1	1	0	Nudix	N-terminal
zf-HYPF	PF07503.7	gi|385804984|ref|YP_005841384.1|	-	0.28	10.6	4.1	4.6	6.7	0.2	2.2	2	0	0	2	2	2	0	HypF	finger
Zn-ribbon_8	PF09723.5	gi|385804984|ref|YP_005841384.1|	-	0.31	11.0	3.3	4.2	7.3	2.2	2.1	1	1	0	1	1	1	0	Zinc	ribbon	domain
UPF0547	PF10571.4	gi|385804984|ref|YP_005841384.1|	-	0.46	10.2	5.1	2	8.1	0.1	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DUF1610	PF07754.6	gi|385804984|ref|YP_005841384.1|	-	0.5	10.5	4.1	1.1	9.3	0.1	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1610)
DUF164	PF02591.10	gi|385804984|ref|YP_005841384.1|	-	0.51	10.1	2.6	1.4	8.8	1.2	2.0	1	1	0	1	1	1	0	Putative	zinc	ribbon	domain
Sgf11	PF08209.6	gi|385804984|ref|YP_005841384.1|	-	0.67	9.3	3.5	0.86	8.9	0.1	2.3	2	1	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
Prim_Zn_Ribbon	PF08273.7	gi|385804984|ref|YP_005841384.1|	-	1.1	9.3	6.6	1.5	8.9	0.2	2.2	1	1	1	2	2	2	0	Zinc-binding	domain	of	primase-helicase
zf-RING_3	PF14369.1	gi|385804984|ref|YP_005841384.1|	-	1.2	9.1	3.7	13	5.8	2.5	2.1	1	1	1	2	2	2	0	zinc-finger
DUF35_N	PF12172.3	gi|385804984|ref|YP_005841384.1|	-	3.7	7.5	4.9	10	6.1	0.4	2.3	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DUF1931	PF09123.6	gi|385804985|ref|YP_005841385.1|	-	0.00028	20.8	0.5	0.00031	20.6	0.3	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1931)
Histone	PF00125.19	gi|385804985|ref|YP_005841385.1|	-	0.00054	20.0	0.1	0.00073	19.6	0.0	1.5	1	1	0	1	1	1	1	Core	histone	H2A/H2B/H3/H4
CBFD_NFYB_HMF	PF00808.18	gi|385804985|ref|YP_005841385.1|	-	0.0041	17.1	0.1	0.007	16.3	0.1	1.6	1	1	0	1	1	1	1	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
Rib_5-P_isom_A	PF06026.9	gi|385804986|ref|YP_005841386.1|	-	3.8e-58	195.6	0.2	5e-58	195.2	0.1	1.1	1	0	0	1	1	1	1	Ribose	5-phosphate	isomerase	A	(phosphoriboisomerase	A)
DeoRC	PF00455.17	gi|385804986|ref|YP_005841386.1|	-	1.1e-07	31.5	0.2	2.9e-05	23.7	0.0	2.4	2	0	0	2	2	2	2	DeoR	C	terminal	sensor	domain
Sugar-bind	PF04198.8	gi|385804986|ref|YP_005841386.1|	-	0.084	11.7	0.1	0.18	10.6	0.1	1.6	1	1	0	1	1	1	0	Putative	sugar-binding	domain
AAA_16	PF13191.1	gi|385804987|ref|YP_005841387.1|	-	2.9e-15	56.7	0.3	5.6e-14	52.5	0.0	2.5	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|385804987|ref|YP_005841387.1|	-	3e-10	40.3	0.0	6.5e-10	39.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|385804987|ref|YP_005841387.1|	-	2.6e-06	27.6	0.0	6.4e-06	26.3	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Cdc6_C	PF09079.6	gi|385804987|ref|YP_005841387.1|	-	4.6e-06	26.2	0.1	2.8e-05	23.7	0.0	2.4	2	0	0	2	2	2	1	CDC6,	C	terminal
Arch_ATPase	PF01637.13	gi|385804987|ref|YP_005841387.1|	-	4.3e-05	23.3	0.0	8.3e-05	22.3	0.0	1.5	1	1	0	1	1	1	1	Archaeal	ATPase
AAA_19	PF13245.1	gi|385804987|ref|YP_005841387.1|	-	9.8e-05	22.0	0.2	0.00025	20.7	0.1	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_35	PF14516.1	gi|385804987|ref|YP_005841387.1|	-	0.00013	20.7	0.0	0.02	13.5	0.0	2.2	2	0	0	2	2	2	1	AAA-like	domain
NACHT	PF05729.7	gi|385804987|ref|YP_005841387.1|	-	0.00022	20.8	0.0	0.00038	20.1	0.0	1.3	1	0	0	1	1	1	1	NACHT	domain
AAA_17	PF13207.1	gi|385804987|ref|YP_005841387.1|	-	0.0003	21.5	0.1	0.0012	19.6	0.1	2.4	1	1	0	1	1	1	1	AAA	domain
AAA_14	PF13173.1	gi|385804987|ref|YP_005841387.1|	-	0.00045	20.1	0.1	0.0029	17.5	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|385804987|ref|YP_005841387.1|	-	0.00059	19.7	0.0	0.0011	18.8	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_11	PF13086.1	gi|385804987|ref|YP_005841387.1|	-	0.00083	19.0	0.0	0.0012	18.5	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|385804987|ref|YP_005841387.1|	-	0.0038	17.5	0.0	0.018	15.3	0.0	2.3	2	1	0	2	2	1	1	AAA	domain
IstB_IS21	PF01695.12	gi|385804987|ref|YP_005841387.1|	-	0.0052	16.2	1.0	0.074	12.4	0.7	2.2	1	1	0	1	1	1	1	IstB-like	ATP	binding	protein
NTPase_1	PF03266.10	gi|385804987|ref|YP_005841387.1|	-	0.0081	15.8	0.2	0.017	14.7	0.1	1.6	1	0	0	1	1	1	1	NTPase
RNA_helicase	PF00910.17	gi|385804987|ref|YP_005841387.1|	-	0.0099	16.0	0.0	0.019	15.1	0.0	1.4	1	0	0	1	1	1	1	RNA	helicase
AAA_28	PF13521.1	gi|385804987|ref|YP_005841387.1|	-	0.014	15.4	0.2	0.028	14.3	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
T2SE	PF00437.15	gi|385804987|ref|YP_005841387.1|	-	0.022	13.6	0.0	0.038	12.9	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
RuvB_N	PF05496.7	gi|385804987|ref|YP_005841387.1|	-	0.022	13.8	0.0	0.044	12.8	0.0	1.4	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
Rad17	PF03215.10	gi|385804987|ref|YP_005841387.1|	-	0.023	13.4	0.0	0.034	12.8	0.0	1.4	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
AAA_30	PF13604.1	gi|385804987|ref|YP_005841387.1|	-	0.025	14.1	0.3	0.072	12.6	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.17	gi|385804987|ref|YP_005841387.1|	-	0.031	13.1	0.0	0.043	12.6	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
DUF2075	PF09848.4	gi|385804987|ref|YP_005841387.1|	-	0.038	12.9	0.0	0.064	12.2	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
Viral_helicase1	PF01443.13	gi|385804987|ref|YP_005841387.1|	-	0.04	13.4	0.0	0.064	12.7	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA_5	PF07728.9	gi|385804987|ref|YP_005841387.1|	-	0.04	13.6	0.3	0.14	11.9	0.1	2.1	2	1	0	2	2	1	0	AAA	domain	(dynein-related	subfamily)
AAA_32	PF13654.1	gi|385804987|ref|YP_005841387.1|	-	0.049	12.3	0.1	12	4.4	0.0	2.8	3	0	0	3	3	3	0	AAA	domain
Sigma54_activat	PF00158.21	gi|385804987|ref|YP_005841387.1|	-	0.049	13.0	0.0	0.09	12.2	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_25	PF13481.1	gi|385804987|ref|YP_005841387.1|	-	0.052	12.9	0.1	0.36	10.2	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|385804987|ref|YP_005841387.1|	-	0.068	12.6	0.0	0.17	11.3	0.0	1.6	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
AAA_24	PF13479.1	gi|385804987|ref|YP_005841387.1|	-	0.072	12.6	0.0	0.14	11.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
cobW	PF02492.14	gi|385804987|ref|YP_005841387.1|	-	0.086	12.2	0.1	0.18	11.2	0.0	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
DUF835	PF05763.7	gi|385804987|ref|YP_005841387.1|	-	0.11	12.0	0.3	0.21	11.1	0.2	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF835)
Phage-MuB_C	PF09077.6	gi|385804987|ref|YP_005841387.1|	-	0.13	11.9	0.0	0.26	10.9	0.0	1.4	1	0	0	1	1	1	0	Mu	B	transposition	protein,	C	terminal
Bac_DnaA	PF00308.13	gi|385804987|ref|YP_005841387.1|	-	0.15	11.6	0.1	0.29	10.7	0.1	1.4	1	0	0	1	1	1	0	Bacterial	dnaA	protein
MutS_V	PF00488.16	gi|385804988|ref|YP_005841388.1|	-	3.4e-09	36.4	0.0	6.4e-09	35.5	0.0	1.4	1	0	0	1	1	1	1	MutS	domain	V
HHH	PF00633.18	gi|385804988|ref|YP_005841388.1|	-	0.0065	16.1	0.0	0.022	14.4	0.0	2.0	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
IMS_HHH	PF11798.3	gi|385804988|ref|YP_005841388.1|	-	0.0078	16.2	0.0	0.035	14.1	0.0	2.1	2	0	0	2	2	2	1	IMS	family	HHH	motif
AAA	PF00004.24	gi|385804988|ref|YP_005841388.1|	-	0.021	15.0	0.9	0.2	11.8	0.0	2.9	3	0	0	3	3	3	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
HHH_5	PF14520.1	gi|385804988|ref|YP_005841388.1|	-	0.077	13.1	0.3	0.077	13.1	0.2	2.9	3	0	0	3	3	3	0	Helix-hairpin-helix	domain
AAA_29	PF13555.1	gi|385804988|ref|YP_005841388.1|	-	0.099	12.1	0.1	0.21	11.1	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_21	PF13304.1	gi|385804988|ref|YP_005841388.1|	-	0.12	12.3	0.0	6.4	6.6	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
NAD_synthase	PF02540.12	gi|385804989|ref|YP_005841389.1|	-	5.7e-08	31.9	0.0	1.2e-07	30.9	0.0	1.5	1	0	0	1	1	1	1	NAD	synthase
Asn_synthase	PF00733.16	gi|385804989|ref|YP_005841389.1|	-	1.4e-07	31.3	0.1	2.3e-07	30.5	0.1	1.4	1	0	0	1	1	1	1	Asparagine	synthase
tRNA_Me_trans	PF03054.11	gi|385804989|ref|YP_005841389.1|	-	7.6e-07	27.9	0.0	2.3e-05	23.1	0.0	2.2	2	0	0	2	2	2	1	tRNA	methyl	transferase
QueC	PF06508.8	gi|385804989|ref|YP_005841389.1|	-	0.00013	21.3	0.0	0.00064	19.0	0.0	2.0	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
ATP_bind_3	PF01171.15	gi|385804989|ref|YP_005841389.1|	-	0.0008	18.9	0.0	0.0016	17.9	0.0	1.5	1	0	0	1	1	1	1	PP-loop	family
DUF208	PF02677.9	gi|385804989|ref|YP_005841389.1|	-	0.0051	16.6	0.0	0.011	15.5	0.0	1.5	1	0	0	1	1	1	1	Uncharacterized	BCR,	COG1636
FTR_C	PF02741.10	gi|385804989|ref|YP_005841389.1|	-	0.62	9.8	4.0	0.42	10.3	0.2	2.4	3	0	0	3	3	3	0	FTR,	proximal	lobe
TatC	PF00902.13	gi|385804990|ref|YP_005841390.1|	-	2.8e-34	118.3	14.0	3.6e-34	118.0	9.7	1.1	1	0	0	1	1	1	1	Sec-independent	protein	translocase	protein	(TatC)
TatC	PF00902.13	gi|385804991|ref|YP_005841391.1|	-	2.4e-69	233.0	41.2	9.5e-38	129.7	13.2	2.2	2	0	0	2	2	2	2	Sec-independent	protein	translocase	protein	(TatC)
HCV_env	PF01539.12	gi|385804991|ref|YP_005841391.1|	-	1.2	8.6	5.9	11	5.3	1.3	2.9	2	1	0	2	2	2	0	Hepatitis	C	virus	envelope	glycoprotein	E1
DUF2627	PF11118.3	gi|385804991|ref|YP_005841391.1|	-	8.5	6.5	10.5	0.31	11.1	0.1	4.0	2	1	2	4	4	4	0	Protein	of	unknown	function	(DUF2627)
FtsJ	PF01728.14	gi|385804992|ref|YP_005841392.1|	-	1.7e-52	178.0	0.0	2.2e-52	177.6	0.0	1.2	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
TRAM	PF01938.15	gi|385804992|ref|YP_005841392.1|	-	1.3e-09	37.6	0.5	2.5e-09	36.7	0.4	1.5	1	0	0	1	1	1	1	TRAM	domain
Methyltransf_31	PF13847.1	gi|385804992|ref|YP_005841392.1|	-	9.2e-05	22.0	0.0	0.00046	19.8	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|385804992|ref|YP_005841392.1|	-	0.00036	20.2	0.0	0.0017	18.1	0.0	2.0	1	1	1	2	2	2	1	Methyltransferase	domain
NSP13	PF06460.7	gi|385804992|ref|YP_005841392.1|	-	0.0024	16.8	0.0	0.003	16.4	0.0	1.1	1	0	0	1	1	1	1	Coronavirus	NSP13
Methyltransf_26	PF13659.1	gi|385804992|ref|YP_005841392.1|	-	0.018	15.0	0.1	0.049	13.6	0.1	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
CDC48_N	PF02359.13	gi|385804992|ref|YP_005841392.1|	-	0.047	13.6	0.0	0.11	12.4	0.0	1.6	1	0	0	1	1	1	0	Cell	division	protein	48	(CDC48),	N-terminal	domain
Methyltransf_18	PF12847.2	gi|385804992|ref|YP_005841392.1|	-	0.07	13.7	0.1	0.18	12.4	0.1	1.8	1	1	0	1	1	1	0	Methyltransferase	domain
Fibrillarin	PF01269.12	gi|385804992|ref|YP_005841392.1|	-	0.12	11.2	0.0	0.18	10.7	0.0	1.3	1	0	0	1	1	1	0	Fibrillarin
PCNA_N	PF00705.13	gi|385804993|ref|YP_005841393.1|	-	4.9e-09	35.7	1.2	1.5e-08	34.2	0.3	2.0	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
PCNA_C	PF02747.10	gi|385804993|ref|YP_005841393.1|	-	7.9e-09	35.5	0.0	3.9e-08	33.2	0.0	2.1	2	1	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
DNA_pol3_beta_3	PF02768.10	gi|385804993|ref|YP_005841393.1|	-	0.0037	16.8	0.4	0.013	15.0	0.1	1.9	2	1	0	2	2	2	1	DNA	polymerase	III	beta	subunit,	C-terminal	domain
GST_C_2	PF13410.1	gi|385804994|ref|YP_005841394.1|	-	0.056	13.3	0.1	0.11	12.4	0.0	1.5	1	0	0	1	1	1	0	Glutathione	S-transferase,	C-terminal	domain
DNA_primase_lrg	PF04104.9	gi|385804995|ref|YP_005841395.1|	-	2.2e-18	66.4	0.0	4.3e-18	65.5	0.0	1.5	1	1	0	1	1	1	1	Eukaryotic	and	archaeal	DNA	primase,	large	subunit
ABC2_membrane	PF01061.19	gi|385804996|ref|YP_005841396.1|	-	0.22	10.6	3.9	0.26	10.3	2.7	1.0	1	0	0	1	1	1	0	ABC-2	type	transporter
ABC2_membrane_2	PF12679.2	gi|385804996|ref|YP_005841396.1|	-	0.26	10.0	3.1	0.26	10.0	2.1	1.0	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
DUF3481	PF11980.3	gi|385804996|ref|YP_005841396.1|	-	2.7	7.8	4.5	1.2	8.9	0.2	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3481)
PepSY_TM	PF03929.11	gi|385804996|ref|YP_005841396.1|	-	9.9	6.7	7.4	6.4	7.3	1.4	2.2	2	0	0	2	2	2	0	PepSY-associated	TM	helix
Hjc	PF01870.13	gi|385804997|ref|YP_005841397.1|	-	1.4e-27	95.1	0.0	1.7e-27	94.7	0.0	1.1	1	0	0	1	1	1	1	Archaeal	holliday	junction	resolvase	(hjc)
FKBP_C	PF00254.23	gi|385804998|ref|YP_005841398.1|	-	3.9e-20	71.6	0.0	5.9e-20	71.0	0.0	1.3	1	1	0	1	1	1	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
YajC	PF02699.10	gi|385804998|ref|YP_005841398.1|	-	0.017	14.7	0.0	0.037	13.7	0.0	1.5	1	0	0	1	1	1	0	Preprotein	translocase	subunit
UvrC_HhH_N	PF08459.6	gi|385805000|ref|YP_005841400.1|	-	7.5e-40	136.0	0.0	1.5e-39	134.9	0.0	1.6	1	0	0	1	1	1	1	UvrC	Helix-hairpin-helix	N-terminal
HHH	PF00633.18	gi|385805000|ref|YP_005841400.1|	-	3.4e-10	39.0	0.0	1.6e-06	27.4	0.0	2.7	2	0	0	2	2	2	2	Helix-hairpin-helix	motif
HHH_5	PF14520.1	gi|385805000|ref|YP_005841400.1|	-	1.7e-09	37.7	0.0	5.2e-09	36.1	0.0	1.9	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
HHH_2	PF12826.2	gi|385805000|ref|YP_005841400.1|	-	2.1e-09	37.1	0.0	6e-09	35.6	0.0	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
UVR	PF02151.14	gi|385805000|ref|YP_005841400.1|	-	6.1e-09	35.0	4.9	3.8e-08	32.5	1.1	2.9	2	0	0	2	2	2	1	UvrB/uvrC	motif
GIY-YIG	PF01541.19	gi|385805000|ref|YP_005841400.1|	-	4.9e-06	26.8	0.0	1.1e-05	25.7	0.0	1.6	1	0	0	1	1	1	1	GIY-YIG	catalytic	domain
5_3_exonuc	PF01367.15	gi|385805000|ref|YP_005841400.1|	-	0.001	19.2	0.0	0.0086	16.2	0.0	2.3	1	1	1	2	2	2	1	5'-3'	exonuclease,	C-terminal	SAM	fold
IMS_HHH	PF11798.3	gi|385805000|ref|YP_005841400.1|	-	0.0067	16.4	0.0	1.9	8.6	0.0	2.7	2	0	0	2	2	2	1	IMS	family	HHH	motif
HHH_8	PF14716.1	gi|385805000|ref|YP_005841400.1|	-	0.066	13.4	0.0	7.7	6.7	0.0	3.2	3	0	0	3	3	3	0	Helix-hairpin-helix	domain
Transposase_20	PF02371.11	gi|385805000|ref|YP_005841400.1|	-	0.091	12.8	0.0	9	6.4	0.0	2.6	1	1	1	2	2	2	0	Transposase	IS116/IS110/IS902	family
ABC_tran	PF00005.22	gi|385805001|ref|YP_005841401.1|	-	1.3e-26	93.5	0.0	2.4e-26	92.6	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|385805001|ref|YP_005841401.1|	-	3e-12	47.1	0.0	6.1e-08	32.9	0.0	2.2	1	1	1	2	2	2	2	AAA	domain
DUF4162	PF13732.1	gi|385805001|ref|YP_005841401.1|	-	0.0016	18.8	0.0	0.003	18.0	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
DUF258	PF03193.11	gi|385805001|ref|YP_005841401.1|	-	0.0033	16.6	0.0	0.0097	15.1	0.0	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function,	DUF258
AAA_29	PF13555.1	gi|385805001|ref|YP_005841401.1|	-	0.0065	15.9	0.1	0.014	14.9	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
MMR_HSR1	PF01926.18	gi|385805001|ref|YP_005841401.1|	-	0.0099	15.8	0.2	0.2	11.6	0.0	2.7	2	1	0	2	2	2	1	50S	ribosome-binding	GTPase
AAA_10	PF12846.2	gi|385805001|ref|YP_005841401.1|	-	0.014	14.8	0.0	0.29	10.5	0.0	2.2	2	0	0	2	2	2	0	AAA-like	domain
AAA_23	PF13476.1	gi|385805001|ref|YP_005841401.1|	-	0.027	14.7	0.1	0.054	13.8	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
SMC_N	PF02463.14	gi|385805001|ref|YP_005841401.1|	-	0.034	13.3	0.0	9.3	5.4	0.0	2.7	3	0	0	3	3	3	0	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.1	gi|385805001|ref|YP_005841401.1|	-	0.045	13.7	0.0	0.13	12.2	0.0	1.7	1	1	1	2	2	2	0	AAA	ATPase	domain
ArgK	PF03308.11	gi|385805001|ref|YP_005841401.1|	-	0.055	12.2	0.2	0.055	12.2	0.1	2.4	2	1	1	3	3	3	0	ArgK	protein
AAA_22	PF13401.1	gi|385805001|ref|YP_005841401.1|	-	0.12	12.5	0.6	3.9	7.6	0.0	2.9	3	1	1	4	4	4	0	AAA	domain
ABC2_membrane_2	PF12679.2	gi|385805002|ref|YP_005841402.1|	-	4.8e-44	150.2	22.1	5.5e-44	150.0	15.3	1.0	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.19	gi|385805002|ref|YP_005841402.1|	-	3.2e-09	36.2	17.1	3.2e-09	36.2	11.8	2.1	2	1	1	3	3	3	1	ABC-2	type	transporter
ABC2_membrane_4	PF12730.2	gi|385805002|ref|YP_005841402.1|	-	2.8e-07	29.9	34.2	1.7e-06	27.4	23.2	2.1	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.1	gi|385805002|ref|YP_005841402.1|	-	6.5e-07	28.8	14.1	6.5e-07	28.8	9.8	2.4	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.2	gi|385805002|ref|YP_005841402.1|	-	4.1e-06	26.0	17.7	4.1e-06	26.0	12.3	2.9	1	1	2	3	3	3	2	ABC-2	family	transporter	protein
DNA_ligase_aden	PF01653.13	gi|385805003|ref|YP_005841403.1|	-	2.7e-100	335.3	0.0	4.2e-100	334.7	0.0	1.3	1	0	0	1	1	1	1	NAD-dependent	DNA	ligase	adenylation	domain
DNA_ligase_OB	PF03120.11	gi|385805003|ref|YP_005841403.1|	-	3.6e-28	97.0	1.8	9e-28	95.7	1.3	1.7	1	0	0	1	1	1	1	NAD-dependent	DNA	ligase	OB-fold	domain
HHH_2	PF12826.2	gi|385805003|ref|YP_005841403.1|	-	3.2e-21	74.9	0.2	2.1e-18	65.9	0.0	3.0	2	0	0	2	2	2	2	Helix-hairpin-helix	motif
HHH_5	PF14520.1	gi|385805003|ref|YP_005841403.1|	-	2.4e-17	62.8	1.8	2.5e-10	40.3	0.2	3.4	4	0	0	4	4	4	2	Helix-hairpin-helix	domain
BRCT	PF00533.21	gi|385805003|ref|YP_005841403.1|	-	7.6e-10	38.7	0.0	1.8e-09	37.6	0.0	1.7	1	0	0	1	1	1	1	BRCA1	C	Terminus	(BRCT)	domain
DNA_ligase_ZBD	PF03119.11	gi|385805003|ref|YP_005841403.1|	-	3e-05	23.6	1.5	7.2e-05	22.4	1.0	1.7	1	0	0	1	1	1	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
HHH	PF00633.18	gi|385805003|ref|YP_005841403.1|	-	0.0079	15.8	0.1	19	5.2	0.0	4.1	4	0	0	4	4	4	1	Helix-hairpin-helix	motif
Cys_Met_Meta_PP	PF01053.15	gi|385805004|ref|YP_005841404.1|	-	1.4e-127	425.1	0.0	1.6e-127	424.9	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_1_2	PF00155.16	gi|385805004|ref|YP_005841404.1|	-	8.5e-08	31.5	0.2	3.9e-07	29.3	0.0	1.9	2	0	0	2	2	2	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.14	gi|385805004|ref|YP_005841404.1|	-	1.2e-05	24.2	0.1	2.1e-05	23.4	0.1	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.16	gi|385805004|ref|YP_005841404.1|	-	7.2e-05	22.0	0.2	0.00013	21.1	0.1	1.4	1	0	0	1	1	1	1	Beta-eliminating	lyase
DegT_DnrJ_EryC1	PF01041.12	gi|385805004|ref|YP_005841404.1|	-	0.00066	18.8	1.7	0.0012	17.9	1.2	1.4	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Abhydrolase_1	PF00561.15	gi|385805005|ref|YP_005841405.1|	-	3.8e-22	78.9	0.1	4.9e-22	78.6	0.1	1.1	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.2	gi|385805005|ref|YP_005841405.1|	-	1.4e-17	64.3	3.8	2.1e-17	63.7	2.7	1.3	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_5	PF12695.2	gi|385805005|ref|YP_005841405.1|	-	0.0012	18.5	0.0	0.0042	16.8	0.0	2.0	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Esterase	PF00756.15	gi|385805005|ref|YP_005841405.1|	-	0.0015	17.9	0.0	0.0025	17.2	0.0	1.3	1	0	0	1	1	1	1	Putative	esterase
Peptidase_S9	PF00326.16	gi|385805005|ref|YP_005841405.1|	-	0.0021	17.3	0.3	0.014	14.6	0.0	2.2	2	1	0	2	2	2	1	Prolyl	oligopeptidase	family
Tannase	PF07519.6	gi|385805005|ref|YP_005841405.1|	-	0.0041	15.8	0.1	0.0088	14.8	0.1	1.5	1	0	0	1	1	1	1	Tannase	and	feruloyl	esterase
Abhydrolase_4	PF08386.5	gi|385805005|ref|YP_005841405.1|	-	0.028	14.3	0.0	0.078	12.8	0.0	1.7	1	0	0	1	1	1	0	TAP-like	protein
MFS_1	PF07690.11	gi|385805006|ref|YP_005841406.1|	-	8.1e-32	110.2	57.9	3.7e-24	85.1	32.1	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|385805006|ref|YP_005841406.1|	-	2.8e-05	22.9	16.3	2.8e-05	22.9	11.3	2.4	2	1	0	2	2	2	1	Sugar	(and	other)	transporter
DHHA1	PF02272.14	gi|385805007|ref|YP_005841407.1|	-	3.3e-14	52.3	0.3	7.6e-14	51.1	0.2	1.7	1	0	0	1	1	1	1	DHHA1	domain
DHH	PF01368.15	gi|385805007|ref|YP_005841407.1|	-	1.1e-13	51.0	0.0	1.7e-13	50.4	0.0	1.3	1	0	0	1	1	1	1	DHH	family
HAMP	PF00672.20	gi|385805008|ref|YP_005841408.1|	-	0.019	15.1	0.3	0.025	14.7	0.2	1.2	1	0	0	1	1	1	0	HAMP	domain
PRRSV_2b	PF07069.6	gi|385805008|ref|YP_005841408.1|	-	0.028	14.6	1.0	0.036	14.3	0.7	1.2	1	0	0	1	1	1	0	Porcine	reproductive	and	respiratory	syndrome	virus	2b
PHO4	PF01384.15	gi|385805009|ref|YP_005841409.1|	-	8.4e-45	152.8	34.5	8.4e-45	152.8	23.9	1.5	1	1	1	2	2	2	1	Phosphate	transporter	family
UbiA	PF01040.13	gi|385805009|ref|YP_005841409.1|	-	0.0019	17.4	15.6	0.0019	17.4	10.8	4.0	1	1	0	3	3	3	1	UbiA	prenyltransferase	family
DUF21	PF01595.15	gi|385805010|ref|YP_005841410.1|	-	2.9e-54	183.1	0.2	3.9e-54	182.7	0.2	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF21
CorC_HlyC	PF03471.12	gi|385805010|ref|YP_005841410.1|	-	2.4e-19	68.9	1.1	2.4e-19	68.9	0.7	2.0	2	0	0	2	2	2	1	Transporter	associated	domain
CBS	PF00571.23	gi|385805010|ref|YP_005841410.1|	-	1.2e-17	63.4	8.9	1.3e-09	37.6	0.4	3.2	4	0	0	4	4	4	2	CBS	domain
GST_N_3	PF13417.1	gi|385805011|ref|YP_005841411.1|	-	5.8e-16	58.4	0.0	7.1e-16	58.1	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_N_2	PF13409.1	gi|385805011|ref|YP_005841411.1|	-	5.8e-13	48.6	0.0	7e-13	48.3	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
Glutaredoxin	PF00462.19	gi|385805011|ref|YP_005841411.1|	-	8.5e-13	48.0	0.0	1.1e-12	47.6	0.0	1.2	1	0	0	1	1	1	1	Glutaredoxin
GST_N	PF02798.15	gi|385805011|ref|YP_005841411.1|	-	0.00017	21.6	0.0	0.00021	21.4	0.0	1.2	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
DUF836	PF05768.9	gi|385805011|ref|YP_005841411.1|	-	0.014	15.6	0.0	0.016	15.4	0.0	1.3	1	0	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
Curlin_rpt	PF07012.7	gi|385805011|ref|YP_005841411.1|	-	0.48	10.1	2.4	1.2	8.8	0.1	2.1	2	0	0	2	2	2	0	Curlin	associated	repeat
AhpC-TSA	PF00578.16	gi|385805012|ref|YP_005841412.1|	-	5.6e-15	55.1	0.0	7.1e-15	54.7	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|385805012|ref|YP_005841412.1|	-	0.002	17.7	0.0	0.0036	16.8	0.0	1.4	1	1	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.1	gi|385805012|ref|YP_005841412.1|	-	0.0087	15.9	0.0	0.5	10.3	0.0	2.1	1	1	0	1	1	1	1	AhpC/TSA	antioxidant	enzyme
Sua5_yciO_yrdC	PF01300.13	gi|385805013|ref|YP_005841413.1|	-	9.4e-48	161.8	0.1	1.1e-47	161.5	0.1	1.0	1	0	0	1	1	1	1	Telomere	recombination
tRNA-synt_2b	PF00587.20	gi|385805014|ref|YP_005841414.1|	-	1.1e-52	178.1	0.0	1.6e-52	177.5	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.15	gi|385805014|ref|YP_005841414.1|	-	6.4e-19	67.6	0.1	1.5e-18	66.4	0.0	1.7	1	0	0	1	1	1	1	Anticodon	binding	domain
zinc_ribbon_5	PF13719.1	gi|385805014|ref|YP_005841414.1|	-	0.044	13.3	0.5	2.2	7.9	0.0	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|385805014|ref|YP_005841414.1|	-	0.044	13.4	0.6	2.3	7.9	0.0	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|385805014|ref|YP_005841414.1|	-	0.088	12.0	2.4	0.58	9.4	1.6	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|385805014|ref|YP_005841414.1|	-	0.18	11.7	0.1	5.7	6.9	0.0	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
DUF3732	PF12532.3	gi|385805015|ref|YP_005841415.1|	-	0.15	11.5	0.1	0.22	11.0	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3732)
Arginosuc_synth	PF00764.14	gi|385805016|ref|YP_005841416.1|	-	7.6e-144	479.5	0.0	8.8e-144	479.2	0.0	1.0	1	0	0	1	1	1	1	Arginosuccinate	synthase
Asn_synthase	PF00733.16	gi|385805016|ref|YP_005841416.1|	-	3.3e-05	23.5	0.2	7.1e-05	22.4	0.0	1.6	2	0	0	2	2	2	1	Asparagine	synthase
QueC	PF06508.8	gi|385805016|ref|YP_005841416.1|	-	5.3e-05	22.5	0.0	9.8e-05	21.7	0.0	1.4	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
tRNA_Me_trans	PF03054.11	gi|385805016|ref|YP_005841416.1|	-	0.001	17.6	0.0	0.0016	17.0	0.0	1.2	1	0	0	1	1	1	1	tRNA	methyl	transferase
NAD_synthase	PF02540.12	gi|385805016|ref|YP_005841416.1|	-	0.0072	15.2	0.0	0.0095	14.8	0.0	1.2	1	0	0	1	1	1	1	NAD	synthase
Acyl-CoA_dh_2	PF08028.6	gi|385805016|ref|YP_005841416.1|	-	0.023	14.9	4.2	1.2	9.4	0.0	3.2	2	1	1	3	3	3	0	Acyl-CoA	dehydrogenase,	C-terminal	domain
Lyase_1	PF00206.15	gi|385805017|ref|YP_005841417.1|	-	2.2e-55	188.0	0.0	3.8e-55	187.2	0.0	1.4	1	0	0	1	1	1	1	Lyase
ASL_C2	PF14698.1	gi|385805017|ref|YP_005841417.1|	-	3.2e-09	36.7	0.1	1.4e-08	34.6	0.1	2.2	1	0	0	1	1	1	1	Argininosuccinate	lyase	C-terminal
PT-TG	PF14449.1	gi|385805018|ref|YP_005841418.1|	-	0.033	13.9	0.7	0.082	12.6	0.0	1.9	2	1	1	3	3	3	0	Pre-toxin	TG
RimK	PF08443.6	gi|385805019|ref|YP_005841419.1|	-	1.1e-36	126.1	0.0	2.9e-36	124.7	0.0	1.6	2	0	0	2	2	2	1	RimK-like	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|385805019|ref|YP_005841419.1|	-	2.2e-17	63.3	0.0	3.8e-17	62.6	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|385805019|ref|YP_005841419.1|	-	1.5e-09	37.1	0.0	2.4e-09	36.4	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
GSH-S_ATP	PF02955.11	gi|385805019|ref|YP_005841419.1|	-	2.2e-09	36.7	0.0	5.7e-09	35.3	0.0	1.7	2	0	0	2	2	2	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|385805019|ref|YP_005841419.1|	-	1.8e-08	34.4	0.0	2.6e-08	33.8	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.12	gi|385805019|ref|YP_005841419.1|	-	2.9e-06	26.7	0.0	8.6e-06	25.1	0.0	1.9	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp	PF02222.17	gi|385805019|ref|YP_005841419.1|	-	0.00057	19.2	0.0	0.002	17.4	0.0	1.9	2	1	0	2	2	2	1	ATP-grasp	domain
ATP-grasp_5	PF13549.1	gi|385805019|ref|YP_005841419.1|	-	0.0033	16.6	0.0	0.052	12.7	0.0	2.3	1	1	1	2	2	2	1	ATP-grasp	domain
ThiF	PF00899.16	gi|385805019|ref|YP_005841419.1|	-	0.074	12.8	0.5	0.68	9.7	0.0	2.3	2	0	0	2	2	2	0	ThiF	family
Semialdhyde_dh	PF01118.19	gi|385805020|ref|YP_005841420.1|	-	1e-27	96.8	0.0	1.8e-27	96.0	0.0	1.4	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.13	gi|385805020|ref|YP_005841420.1|	-	5.7e-07	29.5	0.0	1.6e-06	28.1	0.0	1.9	1	1	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
DapB_N	PF01113.15	gi|385805020|ref|YP_005841420.1|	-	0.0031	17.4	0.0	0.013	15.4	0.0	1.9	1	1	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Epimerase	PF01370.16	gi|385805020|ref|YP_005841420.1|	-	0.0073	15.7	0.0	0.011	15.1	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.1	gi|385805020|ref|YP_005841420.1|	-	0.013	15.4	0.0	0.041	13.8	0.0	1.9	2	0	0	2	2	2	0	NADH(P)-binding
Endotoxin_C	PF03944.9	gi|385805020|ref|YP_005841420.1|	-	0.14	12.3	0.0	0.23	11.5	0.0	1.4	1	0	0	1	1	1	0	delta	endotoxin
AA_kinase	PF00696.23	gi|385805021|ref|YP_005841421.1|	-	1.5e-29	103.2	3.1	1.9e-29	102.9	2.1	1.1	1	0	0	1	1	1	1	Amino	acid	kinase	family
Aminotran_3	PF00202.16	gi|385805022|ref|YP_005841422.1|	-	2.8e-98	328.8	0.3	3.3e-98	328.6	0.2	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
Cys_Met_Meta_PP	PF01053.15	gi|385805022|ref|YP_005841422.1|	-	0.00032	19.1	0.0	0.0034	15.7	0.0	2.0	2	0	0	2	2	2	1	Cys/Met	metabolism	PLP-dependent	enzyme
Peptidase_M20	PF01546.23	gi|385805023|ref|YP_005841423.1|	-	1.3e-24	86.7	0.0	2e-24	86.1	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|385805023|ref|YP_005841423.1|	-	0.00024	20.8	0.0	0.00056	19.6	0.0	1.7	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
OTCace_N	PF02729.16	gi|385805024|ref|YP_005841424.1|	-	2.5e-48	163.3	0.0	4.6e-48	162.4	0.0	1.4	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.19	gi|385805024|ref|YP_005841424.1|	-	2.5e-43	147.6	0.0	4.8e-43	146.7	0.0	1.5	2	0	0	2	2	2	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
Helicase_C_2	PF13307.1	gi|385805025|ref|YP_005841425.1|	-	5.4e-33	114.3	0.0	1.6e-32	112.7	0.0	1.8	1	0	0	1	1	1	1	Helicase	C-terminal	domain
DEAD_2	PF06733.10	gi|385805025|ref|YP_005841425.1|	-	5e-23	81.3	0.0	9.1e-23	80.5	0.0	1.4	1	0	0	1	1	1	1	DEAD_2
DEAD	PF00270.24	gi|385805025|ref|YP_005841425.1|	-	2.3e-08	33.7	0.6	7.8e-06	25.4	0.0	3.2	3	0	0	3	3	3	1	DEAD/DEAH	box	helicase
ResIII	PF04851.10	gi|385805025|ref|YP_005841425.1|	-	9.2e-06	25.6	0.8	0.00046	20.0	0.5	2.8	1	1	1	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Zot	PF05707.7	gi|385805025|ref|YP_005841425.1|	-	0.00064	19.2	0.1	0.057	12.8	0.0	2.4	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
AAA_19	PF13245.1	gi|385805025|ref|YP_005841425.1|	-	0.00077	19.1	0.2	0.0019	17.9	0.1	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
PhoH	PF02562.11	gi|385805025|ref|YP_005841425.1|	-	0.0026	17.0	0.1	0.017	14.3	0.0	2.0	2	0	0	2	2	2	1	PhoH-like	protein
KaiC	PF06745.8	gi|385805025|ref|YP_005841425.1|	-	0.0033	16.5	0.0	0.006	15.7	0.0	1.4	1	0	0	1	1	1	1	KaiC
AAA	PF00004.24	gi|385805025|ref|YP_005841425.1|	-	0.011	15.9	1.1	0.41	10.8	0.1	2.9	2	2	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_30	PF13604.1	gi|385805025|ref|YP_005841425.1|	-	0.014	14.9	0.1	0.033	13.7	0.1	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|385805025|ref|YP_005841425.1|	-	0.015	15.3	1.2	0.66	9.9	0.8	3.1	1	1	0	1	1	1	0	AAA	ATPase	domain
DUF2075	PF09848.4	gi|385805025|ref|YP_005841425.1|	-	0.018	14.0	0.0	0.91	8.4	0.0	2.3	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_34	PF13872.1	gi|385805025|ref|YP_005841425.1|	-	0.023	13.4	0.0	0.04	12.6	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	NTP	hydrolase	pore-1
TPR_MLP1_2	PF07926.7	gi|385805025|ref|YP_005841425.1|	-	0.03	14.0	0.3	0.088	12.5	0.2	1.8	1	0	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
AAA_11	PF13086.1	gi|385805025|ref|YP_005841425.1|	-	0.032	13.8	0.1	0.091	12.3	0.1	1.7	2	0	0	2	2	2	0	AAA	domain
HAUS-augmin3	PF14932.1	gi|385805025|ref|YP_005841425.1|	-	0.051	12.7	2.6	1.9	7.6	0.0	3.1	3	0	0	3	3	3	0	HAUS	augmin-like	complex	subunit	3
Myosin_tail_1	PF01576.14	gi|385805025|ref|YP_005841425.1|	-	0.054	11.2	0.8	0.086	10.5	0.6	1.2	1	0	0	1	1	1	0	Myosin	tail
AAA_22	PF13401.1	gi|385805025|ref|YP_005841425.1|	-	0.054	13.6	2.2	5.4	7.1	0.1	3.3	1	1	2	3	3	3	0	AAA	domain
Gluconate_2-dh3	PF13618.1	gi|385805025|ref|YP_005841425.1|	-	0.53	10.4	5.1	16	5.6	0.0	3.4	3	0	0	3	3	3	0	Gluconate	2-dehydrogenase	subunit	3
RsbRD_N	PF14361.1	gi|385805025|ref|YP_005841425.1|	-	2.6	8.5	6.1	6.9	7.1	0.7	3.5	2	1	0	3	3	3	0	RsbT	co-antagonist	protein	rsbRD	N-terminal	domain
p450	PF00067.17	gi|385805026|ref|YP_005841426.1|	-	2.2e-90	303.4	0.0	2.7e-90	303.1	0.0	1.0	1	0	0	1	1	1	1	Cytochrome	P450
2_5_RNA_ligase2	PF13563.1	gi|385805027|ref|YP_005841427.1|	-	2.5e-13	49.9	0.0	2.9e-13	49.8	0.0	1.2	1	0	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
AKAP7_NLS	PF10469.4	gi|385805027|ref|YP_005841427.1|	-	4.2e-05	23.3	0.0	0.00011	21.9	0.0	1.7	1	1	1	2	2	2	1	AKAP7	2'5'	RNA	ligase-like	domain
LigT_PEase	PF02834.11	gi|385805027|ref|YP_005841427.1|	-	4.2e-05	23.4	0.0	0.00098	19.0	0.0	2.5	3	0	0	3	3	3	1	LigT	like	Phosphoesterase
Usp	PF00582.21	gi|385805028|ref|YP_005841428.1|	-	3.1e-30	105.2	0.5	4e-30	104.8	0.3	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
DXP_reductoisom	PF02670.11	gi|385805028|ref|YP_005841428.1|	-	0.046	14.2	0.1	0.064	13.7	0.0	1.4	1	1	0	1	1	1	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
TauE	PF01925.14	gi|385805029|ref|YP_005841429.1|	-	1.8e-32	112.7	17.8	1.8e-32	112.7	12.4	1.5	1	1	0	1	1	1	1	Sulfite	exporter	TauE/SafE
IncA	PF04156.9	gi|385805029|ref|YP_005841429.1|	-	0.44	10.1	0.0	0.44	10.1	0.0	2.9	4	0	0	4	4	4	0	IncA	protein
UvrB	PF12344.3	gi|385805030|ref|YP_005841430.1|	-	4.5e-22	77.2	3.6	7.1e-22	76.6	1.2	2.2	2	0	0	2	2	2	1	Ultra-violet	resistance	protein	B
Helicase_C	PF00271.26	gi|385805030|ref|YP_005841430.1|	-	1.9e-14	53.2	0.0	4.7e-14	52.0	0.0	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
UVR	PF02151.14	gi|385805030|ref|YP_005841430.1|	-	8.3e-10	37.8	4.1	3.2e-09	36.0	2.8	2.1	1	0	0	1	1	1	1	UvrB/uvrC	motif
ResIII	PF04851.10	gi|385805030|ref|YP_005841430.1|	-	1.5e-08	34.6	0.1	1e-07	31.9	0.0	2.3	3	0	0	3	3	3	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|385805030|ref|YP_005841430.1|	-	9.3e-05	21.9	0.1	0.003	17.0	0.0	2.9	2	1	0	3	3	3	1	DEAD/DEAH	box	helicase
UB2H	PF14814.1	gi|385805030|ref|YP_005841430.1|	-	0.0057	16.3	0.0	0.02	14.5	0.0	2.0	1	1	0	1	1	1	1	Bifunctional	transglycosylase	second	domain
AAA_19	PF13245.1	gi|385805030|ref|YP_005841430.1|	-	0.0067	16.1	0.1	6.6	6.5	0.0	3.2	4	0	0	4	4	4	2	Part	of	AAA	domain
DUF87	PF01935.12	gi|385805030|ref|YP_005841430.1|	-	0.036	13.8	3.5	0.067	12.9	0.1	2.8	3	0	0	3	3	3	0	Domain	of	unknown	function	DUF87
AAA	PF00004.24	gi|385805030|ref|YP_005841430.1|	-	0.038	14.2	0.5	2.2	8.4	0.0	3.5	4	0	0	4	4	4	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Cpl-7	PF08230.6	gi|385805030|ref|YP_005841430.1|	-	0.086	12.5	0.1	18	5.1	0.0	2.7	2	0	0	2	2	2	0	Cpl-7	lysozyme	C-terminal	domain
NACHT	PF05729.7	gi|385805030|ref|YP_005841430.1|	-	0.11	12.1	0.2	4.4	6.9	0.0	2.4	2	0	0	2	2	2	0	NACHT	domain
Med9	PF07544.8	gi|385805031|ref|YP_005841431.1|	-	0.002	17.7	1.1	0.083	12.6	0.1	2.2	1	1	1	2	2	2	1	RNA	polymerase	II	transcription	mediator	complex	subunit	9
DUF619	PF04768.8	gi|385805031|ref|YP_005841431.1|	-	0.0049	16.2	0.2	0.0057	16.0	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF619)
Nucleo_P87	PF07267.6	gi|385805031|ref|YP_005841431.1|	-	0.0051	15.5	0.2	0.0057	15.4	0.2	1.1	1	0	0	1	1	1	1	Nucleopolyhedrovirus	capsid	protein	P87
Latarcin	PF10279.4	gi|385805031|ref|YP_005841431.1|	-	0.0098	16.0	0.4	0.02	15.0	0.3	1.5	1	1	0	1	1	1	1	Latarcin	precursor
HrpJ	PF07201.6	gi|385805031|ref|YP_005841431.1|	-	0.013	15.5	4.9	0.021	14.8	3.4	1.3	1	1	0	1	1	1	0	HrpJ-like	domain
DUF3509	PF12021.3	gi|385805031|ref|YP_005841431.1|	-	0.015	15.0	1.0	0.023	14.4	0.7	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3509)
KorB	PF08535.5	gi|385805031|ref|YP_005841431.1|	-	0.037	14.1	0.4	0.1	12.7	0.2	1.7	1	1	1	2	2	2	0	KorB	domain
TPR_MLP1_2	PF07926.7	gi|385805031|ref|YP_005841431.1|	-	0.06	13.0	8.6	0.088	12.5	6.0	1.3	1	0	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
Tropomyosin	PF00261.15	gi|385805031|ref|YP_005841431.1|	-	0.085	11.9	7.4	0.15	11.0	5.1	1.4	1	1	0	1	1	1	0	Tropomyosin
SCO1-SenC	PF02630.9	gi|385805031|ref|YP_005841431.1|	-	0.11	12.0	0.0	0.11	12.0	0.0	1.2	1	0	0	1	1	1	0	SCO1/SenC
AAA_32	PF13654.1	gi|385805031|ref|YP_005841431.1|	-	0.15	10.7	3.3	0.15	10.6	2.3	1.0	1	0	0	1	1	1	0	AAA	domain
DUF2205	PF10224.4	gi|385805031|ref|YP_005841431.1|	-	0.18	11.4	2.3	0.44	10.1	1.6	1.8	1	1	0	1	1	1	0	Predicted	coiled-coil	protein	(DUF2205)
Phage_GP20	PF06810.6	gi|385805031|ref|YP_005841431.1|	-	0.28	10.6	5.8	0.41	10.0	4.0	1.4	1	1	0	1	1	1	0	Phage	minor	structural	protein	GP20
ATP-synt_B	PF00430.13	gi|385805031|ref|YP_005841431.1|	-	0.39	10.5	8.9	8	6.2	0.0	2.0	1	1	1	2	2	2	0	ATP	synthase	B/B'	CF(0)
ApoLp-III	PF07464.6	gi|385805031|ref|YP_005841431.1|	-	0.52	10.3	4.7	0.79	9.7	3.2	1.2	1	0	0	1	1	1	0	Apolipophorin-III	precursor	(apoLp-III)
FliE	PF02049.13	gi|385805031|ref|YP_005841431.1|	-	0.68	9.9	3.1	0.73	9.9	1.0	1.7	1	1	1	2	2	2	0	Flagellar	hook-basal	body	complex	protein	FliE
FUSC	PF04632.7	gi|385805031|ref|YP_005841431.1|	-	0.77	8.1	4.0	0.88	7.9	2.8	1.0	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
Baculo_PEP_C	PF04513.7	gi|385805031|ref|YP_005841431.1|	-	1.1	9.0	4.4	2	8.2	3.0	1.5	1	1	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF4404	PF14357.1	gi|385805031|ref|YP_005841431.1|	-	1.4	9.4	9.0	7.4	7.0	1.1	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4404)
DUF521	PF04412.8	gi|385805032|ref|YP_005841432.1|	-	0.068	11.7	0.0	0.1	11.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF521)
DUF95	PF01944.12	gi|385805033|ref|YP_005841433.1|	-	1.1e-25	90.3	17.1	1.1e-25	90.3	11.8	3.6	2	1	0	3	3	3	1	Integral	membrane	protein	DUF95
Rhodanese	PF00581.15	gi|385805034|ref|YP_005841434.1|	-	7e-36	123.0	0.1	1.3e-19	70.6	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
Rhodanese	PF00581.15	gi|385805035|ref|YP_005841435.1|	-	4.8e-37	126.7	0.0	3.2e-19	69.3	0.0	2.5	2	1	1	3	3	3	2	Rhodanese-like	domain
DUF2080	PF09853.4	gi|385805037|ref|YP_005841437.1|	-	0.047	13.4	0.0	0.069	12.9	0.0	1.3	1	0	0	1	1	1	0	Putative	transposon-encoded	protein	(DUF2080)
Methyltransf_11	PF08241.7	gi|385805038|ref|YP_005841438.1|	-	9.3e-23	80.5	0.0	1.5e-22	79.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|385805038|ref|YP_005841438.1|	-	3.6e-17	62.3	0.0	4.3e-17	62.0	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|385805038|ref|YP_005841438.1|	-	4e-12	46.1	0.0	5.1e-12	45.7	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|385805038|ref|YP_005841438.1|	-	4.6e-11	42.9	0.0	7.5e-11	42.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|385805038|ref|YP_005841438.1|	-	4.5e-10	40.0	0.0	7.3e-10	39.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|385805038|ref|YP_005841438.1|	-	2.8e-09	36.4	0.0	5.2e-09	35.5	0.0	1.3	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.7	gi|385805038|ref|YP_005841438.1|	-	5.1e-09	36.5	0.0	7.8e-09	35.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_9	PF08003.6	gi|385805038|ref|YP_005841438.1|	-	2.6e-06	26.3	0.0	3.5e-06	25.9	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
MetW	PF07021.7	gi|385805038|ref|YP_005841438.1|	-	2.5e-05	23.7	0.0	3.7e-05	23.1	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_26	PF13659.1	gi|385805038|ref|YP_005841438.1|	-	4.3e-05	23.5	0.0	0.00011	22.2	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_2	PF00891.13	gi|385805038|ref|YP_005841438.1|	-	0.00045	19.4	0.0	0.00059	19.1	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase
PCMT	PF01135.14	gi|385805038|ref|YP_005841438.1|	-	0.00086	18.9	0.0	0.0015	18.1	0.0	1.4	1	1	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
CMAS	PF02353.15	gi|385805038|ref|YP_005841438.1|	-	0.013	14.5	0.0	0.016	14.3	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Methyltransf_29	PF03141.11	gi|385805038|ref|YP_005841438.1|	-	0.017	13.4	0.0	0.021	13.1	0.0	1.1	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
MTS	PF05175.9	gi|385805038|ref|YP_005841438.1|	-	0.043	13.1	0.0	0.083	12.2	0.0	1.4	1	1	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_8	PF05148.10	gi|385805038|ref|YP_005841438.1|	-	0.1	12.1	0.0	0.22	11.1	0.0	1.5	2	0	0	2	2	2	0	Hypothetical	methyltransferase
Methyltransf_32	PF13679.1	gi|385805038|ref|YP_005841438.1|	-	0.11	12.1	0.0	0.17	11.5	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
RrnaAD	PF00398.15	gi|385805038|ref|YP_005841438.1|	-	0.12	11.4	0.0	0.16	10.9	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
DUF2934	PF11154.3	gi|385805038|ref|YP_005841438.1|	-	0.58	9.5	4.1	0.2	11.0	0.6	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2934)
KaiC	PF06745.8	gi|385805039|ref|YP_005841439.1|	-	0.0032	16.6	0.1	0.0041	16.2	0.0	1.1	1	0	0	1	1	1	1	KaiC
DUF2072	PF09845.4	gi|385805041|ref|YP_005841441.1|	-	1.2e-28	99.6	6.7	2.3e-14	53.4	0.3	2.6	2	1	1	3	3	3	2	Zn-ribbon	containing	protein	(DUF2072)
zinc_ribbon_2	PF13240.1	gi|385805041|ref|YP_005841441.1|	-	0.076	12.5	4.2	0.2	11.2	2.9	1.8	1	0	0	1	1	1	0	zinc-ribbon	domain
DUF1451	PF07295.6	gi|385805041|ref|YP_005841441.1|	-	0.12	12.1	0.5	0.27	10.9	0.4	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1451)
zf-C2H2_6	PF13912.1	gi|385805041|ref|YP_005841441.1|	-	0.14	12.0	0.1	0.14	12.0	0.0	1.8	2	0	0	2	2	2	0	C2H2-type	zinc	finger
Zn-ribbon_8	PF09723.5	gi|385805041|ref|YP_005841441.1|	-	0.16	11.9	1.2	0.52	10.2	0.8	1.9	1	0	0	1	1	1	0	Zinc	ribbon	domain
zf-C2HC5	PF06221.8	gi|385805041|ref|YP_005841441.1|	-	0.17	11.6	0.5	0.34	10.7	0.4	1.4	1	0	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
DUF1272	PF06906.6	gi|385805041|ref|YP_005841441.1|	-	0.32	10.8	1.6	0.63	9.9	1.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
zf-C2H2	PF00096.21	gi|385805041|ref|YP_005841441.1|	-	1.1	9.6	3.9	2.9	8.4	0.2	2.5	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
zf-ribbon_3	PF13248.1	gi|385805041|ref|YP_005841441.1|	-	3.6	6.9	5.6	42	3.5	3.9	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|385805041|ref|YP_005841441.1|	-	9.5	5.6	6.8	16	4.8	0.1	2.8	3	0	0	3	3	3	0	TFIIB	zinc-binding
DUF2073	PF09846.4	gi|385805042|ref|YP_005841442.1|	-	3.1e-46	155.3	0.3	4e-46	154.9	0.2	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2073)
MMR_HSR1	PF01926.18	gi|385805043|ref|YP_005841443.1|	-	5.4e-15	55.3	0.0	7.9e-15	54.8	0.0	1.2	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
GTP_EFTU	PF00009.22	gi|385805043|ref|YP_005841443.1|	-	8.3e-11	41.6	0.1	5.8e-05	22.6	0.0	2.6	2	2	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
Arf	PF00025.16	gi|385805043|ref|YP_005841443.1|	-	6.1e-07	28.8	0.0	0.00038	19.7	0.0	2.5	2	1	1	3	3	3	2	ADP-ribosylation	factor	family
AAA_17	PF13207.1	gi|385805043|ref|YP_005841443.1|	-	6.6e-06	26.9	0.1	1.2e-05	26.0	0.1	1.4	1	1	0	1	1	1	1	AAA	domain
SRPRB	PF09439.5	gi|385805043|ref|YP_005841443.1|	-	1.5e-05	24.2	0.0	0.058	12.6	0.0	2.3	2	0	0	2	2	2	2	Signal	recognition	particle	receptor	beta	subunit
AAA_18	PF13238.1	gi|385805043|ref|YP_005841443.1|	-	2.7e-05	24.4	0.0	3.9e-05	23.9	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
FeoB_N	PF02421.13	gi|385805043|ref|YP_005841443.1|	-	4.7e-05	22.7	0.5	0.00068	18.9	0.4	2.5	1	1	0	1	1	1	1	Ferrous	iron	transport	protein	B
Miro	PF08477.8	gi|385805043|ref|YP_005841443.1|	-	9.9e-05	22.8	0.0	0.00041	20.8	0.0	1.9	1	1	0	1	1	1	1	Miro-like	protein
Dynamin_N	PF00350.18	gi|385805043|ref|YP_005841443.1|	-	0.00052	19.8	0.0	0.085	12.6	0.2	2.7	1	1	1	2	2	2	1	Dynamin	family
NB-ARC	PF00931.17	gi|385805043|ref|YP_005841443.1|	-	0.00053	18.9	0.0	0.0018	17.2	0.0	1.7	2	0	0	2	2	2	1	NB-ARC	domain
Septin	PF00735.13	gi|385805043|ref|YP_005841443.1|	-	0.00066	18.7	0.0	0.001	18.1	0.0	1.5	1	1	0	1	1	1	1	Septin
AAA_22	PF13401.1	gi|385805043|ref|YP_005841443.1|	-	0.0038	17.3	0.0	0.0065	16.6	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|385805043|ref|YP_005841443.1|	-	0.0044	16.7	0.2	0.028	14.1	0.0	2.1	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA	PF00004.24	gi|385805043|ref|YP_005841443.1|	-	0.0065	16.6	0.0	0.02	15.0	0.0	1.8	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_28	PF13521.1	gi|385805043|ref|YP_005841443.1|	-	0.0071	16.3	0.1	0.085	12.8	0.0	2.1	1	1	1	2	2	2	1	AAA	domain
RNA_helicase	PF00910.17	gi|385805043|ref|YP_005841443.1|	-	0.0074	16.4	0.0	0.017	15.2	0.0	1.7	2	0	0	2	2	1	1	RNA	helicase
cobW	PF02492.14	gi|385805043|ref|YP_005841443.1|	-	0.0082	15.5	0.0	3.7	6.9	0.0	2.3	2	1	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_16	PF13191.1	gi|385805043|ref|YP_005841443.1|	-	0.013	15.4	0.0	0.029	14.3	0.0	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
ArgK	PF03308.11	gi|385805043|ref|YP_005841443.1|	-	0.024	13.3	0.1	0.23	10.1	0.0	2.3	2	1	0	2	2	2	0	ArgK	protein
ABC_tran	PF00005.22	gi|385805043|ref|YP_005841443.1|	-	0.024	14.9	0.0	0.035	14.4	0.0	1.4	1	0	0	1	1	1	0	ABC	transporter
ATP-synt_ab	PF00006.20	gi|385805043|ref|YP_005841443.1|	-	0.029	13.8	0.0	0.059	12.8	0.0	1.5	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Zeta_toxin	PF06414.7	gi|385805043|ref|YP_005841443.1|	-	0.031	13.3	0.0	0.082	12.0	0.0	1.6	2	0	0	2	2	2	0	Zeta	toxin
AAA_14	PF13173.1	gi|385805043|ref|YP_005841443.1|	-	0.034	14.0	0.0	0.062	13.1	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|385805043|ref|YP_005841443.1|	-	0.048	13.3	0.0	0.082	12.5	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
Arch_ATPase	PF01637.13	gi|385805043|ref|YP_005841443.1|	-	0.067	12.8	0.0	0.092	12.4	0.0	1.5	1	1	0	1	1	1	0	Archaeal	ATPase
MMR_HSR1_C	PF08438.5	gi|385805043|ref|YP_005841443.1|	-	0.071	13.3	0.1	0.18	12.0	0.0	1.6	2	0	0	2	2	1	0	GTPase	of	unknown	function	C-terminal
MobB	PF03205.9	gi|385805043|ref|YP_005841443.1|	-	0.081	12.6	0.0	0.27	10.9	0.0	1.9	1	1	1	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
RuvB_N	PF05496.7	gi|385805043|ref|YP_005841443.1|	-	0.084	11.9	0.0	0.15	11.0	0.0	1.4	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
FMN_bind	PF04205.9	gi|385805043|ref|YP_005841443.1|	-	0.086	13.0	0.1	0.17	12.0	0.1	1.5	1	0	0	1	1	1	0	FMN-binding	domain
AAA_25	PF13481.1	gi|385805043|ref|YP_005841443.1|	-	0.089	12.1	0.0	0.17	11.2	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
GerE	PF00196.14	gi|385805045|ref|YP_005841444.1|	-	0.078	12.3	0.0	0.14	11.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
TrmB	PF01978.14	gi|385805046|ref|YP_005841445.1|	-	0.027	14.1	0.0	0.088	12.5	0.0	1.8	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_15	PF12324.3	gi|385805046|ref|YP_005841445.1|	-	0.11	12.1	0.1	0.42	10.3	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	alkylmercury	lyase
HTH_11	PF08279.7	gi|385805046|ref|YP_005841445.1|	-	0.14	11.8	0.0	0.47	10.1	0.0	1.8	2	0	0	2	2	2	0	HTH	domain
DUF4450	PF14614.1	gi|385805047|ref|YP_005841446.1|	-	0.063	12.4	0.0	0.081	12.0	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4450)
AAA_25	PF13481.1	gi|385805048|ref|YP_005841447.1|	-	0.058	12.7	0.8	1.4	8.2	0.3	2.2	1	1	1	2	2	2	0	AAA	domain
AAA	PF00004.24	gi|385805048|ref|YP_005841447.1|	-	0.078	13.1	0.0	0.13	12.4	0.0	1.4	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Iron_permease	PF04120.7	gi|385805048|ref|YP_005841447.1|	-	0.088	12.3	0.3	0.16	11.5	0.2	1.3	1	0	0	1	1	1	0	Low	affinity	iron	permease
RHH_1	PF01402.16	gi|385805050|ref|YP_005841449.1|	-	0.00031	20.5	0.3	0.00063	19.5	0.2	1.5	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
Hemerythrin	PF01814.18	gi|385805050|ref|YP_005841449.1|	-	0.049	13.7	0.0	0.072	13.2	0.0	1.3	1	1	0	1	1	1	0	Hemerythrin	HHE	cation	binding	domain