# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|385802383|ref|YP_005838783.1| - 9.2e-28 95.8 0.3 2.9e-27 94.1 0.2 1.9 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|385802383|ref|YP_005838783.1| - 1.3e-09 38.3 0.6 2.7e-08 33.9 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|385802383|ref|YP_005838783.1| - 2e-09 37.6 0.4 5.8e-07 29.7 0.3 2.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|385802383|ref|YP_005838783.1| - 7.2e-09 35.9 0.1 0.00072 19.7 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|385802383|ref|YP_005838783.1| - 0.00059 19.6 0.1 0.0026 17.5 0.1 2.0 1 1 0 1 1 1 1 Archaeal ATPase NB-ARC PF00931.17 gi|385802383|ref|YP_005838783.1| - 0.00063 18.6 0.1 0.0012 17.7 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain T2SE PF00437.15 gi|385802383|ref|YP_005838783.1| - 0.00069 18.6 0.0 0.0012 17.8 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein Sigma54_activat PF00158.21 gi|385802383|ref|YP_005838783.1| - 0.002 17.6 0.0 0.0045 16.4 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_18 PF13238.1 gi|385802383|ref|YP_005838783.1| - 0.0029 17.9 0.3 0.019 15.2 0.1 2.5 1 1 1 2 2 2 1 AAA domain DUF815 PF05673.8 gi|385802383|ref|YP_005838783.1| - 0.0033 16.4 0.0 0.0077 15.1 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_17 PF13207.1 gi|385802383|ref|YP_005838783.1| - 0.0036 18.1 0.1 0.018 15.8 0.1 2.3 1 1 0 1 1 1 1 AAA domain DEAD PF00270.24 gi|385802383|ref|YP_005838783.1| - 0.0039 16.6 1.2 1.4 8.4 0.0 2.7 3 0 0 3 3 3 2 DEAD/DEAH box helicase AAA_2 PF07724.9 gi|385802383|ref|YP_005838783.1| - 0.007 16.2 0.1 0.21 11.4 0.0 2.4 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|385802383|ref|YP_005838783.1| - 0.011 14.8 0.0 0.024 13.6 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus ABC_tran PF00005.22 gi|385802383|ref|YP_005838783.1| - 0.013 15.7 0.3 0.049 13.9 0.0 2.1 2 0 0 2 2 1 0 ABC transporter GHL13 PF14883.1 gi|385802383|ref|YP_005838783.1| - 0.022 13.9 0.0 0.049 12.7 0.0 1.6 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase family 13 ToxN_toxin PF13958.1 gi|385802383|ref|YP_005838783.1| - 0.035 13.7 0.4 0.084 12.5 0.3 1.5 1 0 0 1 1 1 0 Toxin ToxN, type III toxin-antitoxin system AAA_24 PF13479.1 gi|385802383|ref|YP_005838783.1| - 0.077 12.5 0.9 0.14 11.7 0.3 1.6 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|385802383|ref|YP_005838783.1| - 0.09 12.9 0.0 0.25 11.5 0.0 1.9 1 0 0 1 1 1 0 RNA helicase RCSD PF05177.7 gi|385802383|ref|YP_005838783.1| - 2 8.9 8.2 0.27 11.7 0.2 2.5 2 0 0 2 2 2 0 RCSD region Peptidase_S24 PF00717.18 gi|385802384|ref|YP_005838784.1| - 0.0012 18.3 0.0 0.0023 17.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase S24-like DNA_pol_E_B PF04042.11 gi|385802385|ref|YP_005838785.1| - 4.9e-13 48.8 0.0 8e-13 48.1 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|385802385|ref|YP_005838785.1| - 1e-11 44.8 0.1 1.9e-11 44.0 0.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|385802385|ref|YP_005838785.1| - 1.3e-05 24.7 2.1 2.9e-05 23.5 1.4 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Colicin_M PF14859.1 gi|385802385|ref|YP_005838785.1| - 0.019 13.8 0.2 0.031 13.1 0.1 1.2 1 0 0 1 1 1 0 Colicin M tRNA_anti-codon PF01336.20 gi|385802385|ref|YP_005838785.1| - 0.024 14.4 0.0 0.057 13.2 0.0 1.6 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain AA_kinase PF00696.23 gi|385802387|ref|YP_005838787.1| - 6e-48 163.4 5.4 2.1e-47 161.7 1.5 2.1 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.1 gi|385802387|ref|YP_005838787.1| - 3.6e-15 55.2 1.1 1.5e-07 30.8 0.1 2.7 2 0 0 2 2 2 2 ACT domain ACT PF01842.20 gi|385802387|ref|YP_005838787.1| - 4.1e-10 38.9 1.4 1.8e-06 27.3 0.1 2.7 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|385802387|ref|YP_005838787.1| - 6.5e-05 23.1 0.8 0.27 11.5 0.0 2.7 1 1 2 3 3 3 2 ACT domain ACT_6 PF13740.1 gi|385802387|ref|YP_005838787.1| - 0.055 13.1 0.5 0.94 9.2 0.1 2.6 2 1 0 2 2 2 0 ACT domain IMP_cyclohyd PF07826.6 gi|385802388|ref|YP_005838788.1| - 1.7e-60 203.8 0.2 2e-60 203.6 0.1 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein CGI-121 PF08617.5 gi|385802389|ref|YP_005838789.1| - 1e-19 70.8 0.0 1.1e-19 70.6 0.0 1.0 1 0 0 1 1 1 1 Kinase binding protein CGI-121 NodS PF05401.6 gi|385802389|ref|YP_005838789.1| - 0.0039 16.5 0.0 0.0059 16.0 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) DEAD PF00270.24 gi|385802390|ref|YP_005838790.1| - 3.1e-24 85.3 0.0 6.2e-24 84.3 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|385802390|ref|YP_005838790.1| - 2.5e-06 27.5 1.9 6.6e-06 26.1 0.6 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|385802390|ref|YP_005838790.1| - 1.5e-05 24.7 0.0 3.8e-05 23.4 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.4 gi|385802390|ref|YP_005838790.1| - 0.00087 18.7 0.0 0.0021 17.5 0.0 1.6 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|385802390|ref|YP_005838790.1| - 0.014 15.0 0.0 0.33 10.7 0.0 2.8 2 0 0 2 2 2 0 Helix-hairpin-helix motif IMS_HHH PF11798.3 gi|385802390|ref|YP_005838790.1| - 0.051 13.6 0.1 0.21 11.6 0.0 2.1 2 0 0 2 2 2 0 IMS family HHH motif DUF897 PF05982.7 gi|385802392|ref|YP_005838792.1| - 0.27 9.9 2.8 0.3 9.8 2.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF897) CytB6-F_Fe-S PF08802.5 gi|385802392|ref|YP_005838792.1| - 7.7 6.6 6.1 2.2 8.3 1.6 1.9 1 1 1 2 2 2 0 Cytochrome B6-F complex Fe-S subunit AAA PF00004.24 gi|385802393|ref|YP_005838793.1| - 8.3e-61 203.9 0.0 2.6e-46 157.0 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|385802393|ref|YP_005838793.1| - 4.2e-12 45.9 0.0 1.2e-07 31.5 0.0 2.9 2 1 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|385802393|ref|YP_005838793.1| - 1.9e-10 41.0 0.2 0.001 19.1 0.0 3.7 2 2 1 3 3 3 2 AAA domain AAA_2 PF07724.9 gi|385802393|ref|YP_005838793.1| - 3.5e-10 40.0 0.0 9.5e-05 22.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.12 gi|385802393|ref|YP_005838793.1| - 2.1e-08 33.6 0.0 5.2e-08 32.4 0.0 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.1 gi|385802393|ref|YP_005838793.1| - 3.2e-08 33.7 4.2 0.0017 18.3 0.3 3.7 2 2 0 2 2 2 2 AAA ATPase domain NACHT PF05729.7 gi|385802393|ref|YP_005838793.1| - 1e-07 31.7 2.5 0.05 13.2 0.6 3.9 3 1 0 3 3 3 2 NACHT domain AAA_17 PF13207.1 gi|385802393|ref|YP_005838793.1| - 7.5e-07 29.9 0.0 0.0016 19.2 0.0 2.8 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|385802393|ref|YP_005838793.1| - 8.8e-07 28.2 0.0 0.00014 20.9 0.0 2.8 3 0 0 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|385802393|ref|YP_005838793.1| - 1.2e-06 28.4 0.0 0.0033 17.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|385802393|ref|YP_005838793.1| - 2.3e-06 27.1 0.0 0.0095 15.3 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_19 PF13245.1 gi|385802393|ref|YP_005838793.1| - 2.9e-06 26.9 0.8 0.0059 16.3 0.0 3.1 3 0 0 3 3 2 2 Part of AAA domain Zeta_toxin PF06414.7 gi|385802393|ref|YP_005838793.1| - 4e-06 26.0 0.0 0.0022 17.1 0.0 2.5 2 0 0 2 2 2 1 Zeta toxin AAA_3 PF07726.6 gi|385802393|ref|YP_005838793.1| - 9.7e-06 25.2 0.0 0.096 12.2 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|385802393|ref|YP_005838793.1| - 1.3e-05 24.3 0.0 0.012 14.5 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_33 PF13671.1 gi|385802393|ref|YP_005838793.1| - 1.4e-05 25.0 2.5 0.0015 18.4 0.0 2.9 2 2 0 2 2 2 1 AAA domain Bac_DnaA PF00308.13 gi|385802393|ref|YP_005838793.1| - 5.2e-05 23.0 0.0 0.015 14.9 0.0 2.6 3 0 0 3 3 2 1 Bacterial dnaA protein Sigma54_activat PF00158.21 gi|385802393|ref|YP_005838793.1| - 5.2e-05 22.7 0.0 0.11 11.9 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_30 PF13604.1 gi|385802393|ref|YP_005838793.1| - 0.00013 21.6 0.5 0.42 10.1 0.1 2.6 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|385802393|ref|YP_005838793.1| - 0.0002 20.8 3.0 0.099 12.0 0.1 3.5 2 2 1 3 3 3 1 AAA domain AAA_24 PF13479.1 gi|385802393|ref|YP_005838793.1| - 0.00021 20.9 0.2 0.022 14.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|385802393|ref|YP_005838793.1| - 0.00071 18.8 0.1 0.0067 15.6 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|385802393|ref|YP_005838793.1| - 0.00091 19.3 0.0 0.3 11.2 0.0 2.9 3 0 0 3 3 2 1 RNA helicase AAA_28 PF13521.1 gi|385802393|ref|YP_005838793.1| - 0.0012 18.8 0.0 0.015 15.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|385802393|ref|YP_005838793.1| - 0.0017 17.9 0.0 1.2 8.7 0.0 2.8 3 0 0 3 3 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_18 PF13238.1 gi|385802393|ref|YP_005838793.1| - 0.0018 18.5 0.0 0.39 11.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|385802393|ref|YP_005838793.1| - 0.0044 17.3 0.1 2.2 8.5 0.0 2.9 2 1 0 2 2 2 1 ABC transporter DAP3 PF10236.4 gi|385802393|ref|YP_005838793.1| - 0.0056 15.6 0.0 1.6 7.5 0.0 2.3 2 0 0 2 2 2 1 Mitochondrial ribosomal death-associated protein 3 TIP49 PF06068.8 gi|385802393|ref|YP_005838793.1| - 0.01 14.5 0.0 0.11 11.2 0.0 2.1 2 0 0 2 2 2 0 TIP49 C-terminus KaiC PF06745.8 gi|385802393|ref|YP_005838793.1| - 0.017 14.2 1.3 2.9 6.9 0.0 3.4 2 1 1 3 3 3 0 KaiC Sigma54_activ_2 PF14532.1 gi|385802393|ref|YP_005838793.1| - 0.022 14.8 0.0 0.31 11.0 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|385802393|ref|YP_005838793.1| - 0.029 14.0 0.0 4.2 6.9 0.0 2.7 2 2 0 2 2 2 0 Archaeal ATPase DUF258 PF03193.11 gi|385802393|ref|YP_005838793.1| - 0.038 13.1 0.0 0.8 8.8 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function, DUF258 KAP_NTPase PF07693.9 gi|385802393|ref|YP_005838793.1| - 0.039 12.9 0.0 5.5 5.8 0.0 2.9 2 1 0 3 3 3 0 KAP family P-loop domain AAA_29 PF13555.1 gi|385802393|ref|YP_005838793.1| - 0.043 13.3 0.1 6.9 6.2 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain PhoH PF02562.11 gi|385802393|ref|YP_005838793.1| - 0.051 12.8 0.2 0.62 9.2 0.1 2.4 2 0 0 2 2 2 0 PhoH-like protein Hpr_kinase_C PF07475.7 gi|385802393|ref|YP_005838793.1| - 0.053 12.8 0.0 1.4 8.2 0.0 2.3 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain NTPase_1 PF03266.10 gi|385802393|ref|YP_005838793.1| - 0.061 13.0 0.0 2.1 8.0 0.0 2.4 2 0 0 2 2 2 0 NTPase Elong_Iki1 PF10483.4 gi|385802393|ref|YP_005838793.1| - 0.063 12.6 0.3 0.34 10.2 0.2 1.9 1 1 0 1 1 1 0 Elongator subunit Iki1 AFG1_ATPase PF03969.11 gi|385802393|ref|YP_005838793.1| - 0.12 11.1 0.0 7.6 5.2 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase Parvo_NS1 PF01057.12 gi|385802393|ref|YP_005838793.1| - 0.13 11.0 0.0 0.22 10.3 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 NB-ARC PF00931.17 gi|385802393|ref|YP_005838793.1| - 0.15 10.8 0.0 1.4 7.6 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain OrfB_IS605 PF01385.14 gi|385802394|ref|YP_005838794.1| - 2.4e-47 161.2 0.0 3.2e-47 160.8 0.0 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385802394|ref|YP_005838794.1| - 2.1e-21 75.3 1.5 2.1e-21 75.3 1.0 2.3 2 0 0 2 2 2 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|385802394|ref|YP_005838794.1| - 0.017 14.4 3.9 0.022 14.0 1.6 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding DUF3791 PF12668.2 gi|385802394|ref|YP_005838794.1| - 0.11 12.1 0.1 0.32 10.6 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3791) C1_2 PF03107.11 gi|385802394|ref|YP_005838794.1| - 0.22 11.6 3.7 0.65 10.1 2.6 1.8 1 0 0 1 1 1 0 C1 domain A2L_zn_ribbon PF08792.5 gi|385802394|ref|YP_005838794.1| - 1.2 8.6 7.1 0.28 10.6 2.4 1.8 2 0 0 2 2 2 0 A2L zinc ribbon domain RRN7 PF11781.3 gi|385802394|ref|YP_005838794.1| - 1.4 8.5 5.8 1.5 8.3 2.9 1.9 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF897 PF05982.7 gi|385802395|ref|YP_005838795.1| - 0.011 14.5 0.5 0.012 14.4 0.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF897) Bac_rhodopsin PF01036.13 gi|385802396|ref|YP_005838796.1| - 2.6e-66 223.1 20.4 3e-66 222.9 14.1 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein DUF4260 PF14079.1 gi|385802396|ref|YP_005838796.1| - 0.87 9.4 7.0 0.2 11.4 1.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4260) TF_Zn_Ribbon PF08271.7 gi|385802397|ref|YP_005838797.1| - 0.00054 19.2 0.4 0.028 13.7 0.3 2.5 1 1 1 2 2 2 2 TFIIB zinc-binding Fib_alpha PF08702.5 gi|385802397|ref|YP_005838797.1| - 0.0023 18.0 0.6 0.003 17.6 0.4 1.1 1 0 0 1 1 1 1 Fibrinogen alpha/beta chain family SlyX PF04102.7 gi|385802397|ref|YP_005838797.1| - 0.0063 16.8 0.1 0.011 16.0 0.1 1.3 1 0 0 1 1 1 1 SlyX Zn-ribbon_8 PF09723.5 gi|385802397|ref|YP_005838797.1| - 0.015 15.2 1.6 1.8 8.5 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain ADK_lid PF05191.9 gi|385802397|ref|YP_005838797.1| - 0.019 14.6 3.2 0.74 9.5 0.2 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid C1_1 PF00130.17 gi|385802397|ref|YP_005838797.1| - 0.02 14.6 0.2 0.027 14.2 0.1 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DivIC PF04977.10 gi|385802397|ref|YP_005838797.1| - 0.046 13.2 0.6 0.071 12.6 0.4 1.2 1 0 0 1 1 1 0 Septum formation initiator Med9 PF07544.8 gi|385802397|ref|YP_005838797.1| - 0.047 13.4 0.6 0.092 12.4 0.4 1.5 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 zinc_ribbon_5 PF13719.1 gi|385802397|ref|YP_005838797.1| - 0.21 11.2 0.3 0.21 11.2 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.21 gi|385802397|ref|YP_005838797.1| - 0.25 11.7 2.5 2.7 8.5 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type UPF0547 PF10571.4 gi|385802397|ref|YP_005838797.1| - 0.27 10.9 2.5 0.56 9.9 1.8 1.5 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.1 gi|385802397|ref|YP_005838797.1| - 0.28 10.8 0.4 0.28 10.8 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Transposase_22 PF02994.9 gi|385802397|ref|YP_005838797.1| - 0.35 9.3 4.3 0.41 9.0 3.0 1.0 1 0 0 1 1 1 0 L1 transposable element DUF16 PF01519.11 gi|385802397|ref|YP_005838797.1| - 0.36 11.0 2.9 0.56 10.4 2.0 1.4 1 1 0 1 1 1 0 Protein of unknown function DUF16 Mucin PF01456.12 gi|385802397|ref|YP_005838797.1| - 0.36 10.5 5.7 0.44 10.3 3.9 1.1 1 0 0 1 1 1 0 Mucin-like glycoprotein Adaptin_binding PF10199.4 gi|385802397|ref|YP_005838797.1| - 0.58 10.4 5.6 0.75 10.0 3.9 1.1 1 0 0 1 1 1 0 Alpha and gamma adaptin binding protein p34 zf-dskA_traR PF01258.12 gi|385802397|ref|YP_005838797.1| - 0.63 9.8 2.6 13 5.6 0.1 2.3 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DUF35_N PF12172.3 gi|385802397|ref|YP_005838797.1| - 0.86 9.5 4.7 3.2 7.7 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Pox_RNA_Pol_19 PF05320.7 gi|385802397|ref|YP_005838797.1| - 1.3 8.7 5.5 1.7 8.3 3.8 1.1 1 0 0 1 1 1 0 Poxvirus DNA-directed RNA polymerase 19 kDa subunit NESP55 PF06390.7 gi|385802397|ref|YP_005838797.1| - 2.1 7.6 11.1 2.5 7.4 7.7 1.1 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) Fer4_15 PF13459.1 gi|385802398|ref|YP_005838798.1| - 9.1e-15 54.9 2.5 1.1e-14 54.7 1.7 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|385802398|ref|YP_005838798.1| - 0.00047 20.4 1.9 0.0012 19.1 1.3 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.22 gi|385802398|ref|YP_005838798.1| - 0.025 14.1 1.1 0.38 10.4 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_19 PF06902.6 gi|385802398|ref|YP_005838798.1| - 0.044 13.5 0.2 0.24 11.2 0.2 2.0 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_10 PF13237.1 gi|385802398|ref|YP_005838798.1| - 0.086 12.6 0.0 0.46 10.3 0.0 1.9 2 0 0 2 2 2 0 4Fe-4S dicluster domain Bac_rhodopsin PF01036.13 gi|385802399|ref|YP_005838799.1| - 4.9e-62 209.1 19.7 5.5e-62 208.9 13.7 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein BCD PF15461.1 gi|385802401|ref|YP_005838801.1| - 7.7e-78 261.4 23.4 1.1e-77 260.9 16.3 1.2 1 0 0 1 1 1 1 Beta-carotene 15,15'-dioxygenase KASH PF10541.4 gi|385802401|ref|YP_005838801.1| - 0.021 14.6 2.0 0.44 10.4 0.1 2.8 3 0 0 3 3 3 0 Nuclear envelope localisation domain ERCC4 PF02732.10 gi|385802402|ref|YP_005838802.1| - 1.9e-23 82.8 0.1 7.9e-23 80.7 0.0 2.2 2 0 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.26 gi|385802402|ref|YP_005838802.1| - 1.7e-18 66.2 0.0 5.7e-18 64.5 0.0 2.0 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|385802402|ref|YP_005838802.1| - 1.9e-17 63.2 0.1 9.4e-17 61.0 0.0 2.2 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|385802402|ref|YP_005838802.1| - 2.4e-11 43.7 0.6 7.7e-11 42.1 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|385802402|ref|YP_005838802.1| - 5.4e-10 39.3 0.1 2.1e-09 37.4 0.0 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|385802402|ref|YP_005838802.1| - 7.8e-10 38.4 0.3 5e-09 35.9 0.1 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.18 gi|385802402|ref|YP_005838802.1| - 1.6e-06 27.4 0.1 0.00059 19.3 0.1 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.15 gi|385802402|ref|YP_005838802.1| - 0.012 15.7 0.0 0.089 13.0 0.0 2.6 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold Arc_PepC_II PF06847.6 gi|385802403|ref|YP_005838803.1| - 1.8e-19 69.9 0.0 1.5e-18 67.0 0.0 2.2 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|385802403|ref|YP_005838803.1| - 1.4e-08 34.7 10.3 1.4e-08 34.7 7.1 1.9 2 0 0 2 2 2 1 Type IV leader peptidase family PRA-CH PF01502.13 gi|385802404|ref|YP_005838804.1| - 4.9e-37 125.4 0.3 7.1e-37 124.8 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Halogen_Hydrol PF10112.4 gi|385802405|ref|YP_005838805.1| - 0.079 12.3 0.1 0.18 11.1 0.1 1.5 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein PGM_PMM_I PF02878.11 gi|385802406|ref|YP_005838806.1| - 1.6e-35 121.5 0.0 3.2e-35 120.6 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|385802406|ref|YP_005838806.1| - 5.4e-26 90.9 0.0 1.1e-25 89.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|385802406|ref|YP_005838806.1| - 1.9e-14 53.3 0.1 5.8e-14 51.8 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|385802406|ref|YP_005838806.1| - 7.7e-11 42.0 0.0 1.7e-10 40.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III His_biosynth PF00977.16 gi|385802407|ref|YP_005838807.1| - 9.1e-75 250.8 4.6 1e-74 250.6 3.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|385802407|ref|YP_005838807.1| - 5.8e-12 45.0 0.6 3.2e-06 26.1 0.0 2.3 2 1 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|385802407|ref|YP_005838807.1| - 1.1e-09 37.9 7.1 4.7e-07 29.2 0.6 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.9 gi|385802407|ref|YP_005838807.1| - 6.5e-08 31.9 10.2 9.8e-06 24.8 0.9 2.1 1 1 1 2 2 2 2 Thiazole biosynthesis protein ThiG DHO_dh PF01180.16 gi|385802407|ref|YP_005838807.1| - 9.4e-08 31.3 1.5 9.8e-05 21.4 0.3 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|385802407|ref|YP_005838807.1| - 4.9e-07 29.2 2.1 0.011 14.9 0.1 2.3 2 0 0 2 2 2 2 PcrB family IGPS PF00218.16 gi|385802407|ref|YP_005838807.1| - 2.7e-05 23.3 0.3 0.021 13.9 0.0 2.5 2 1 1 3 3 3 2 Indole-3-glycerol phosphate synthase TMP-TENI PF02581.12 gi|385802407|ref|YP_005838807.1| - 0.0011 18.1 4.0 0.17 10.9 0.4 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI NanE PF04131.9 gi|385802407|ref|YP_005838807.1| - 0.021 13.7 0.9 5 6.0 0.1 2.4 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase IMPDH PF00478.20 gi|385802407|ref|YP_005838807.1| - 0.057 12.3 3.5 1.4 7.6 0.3 2.2 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.7 gi|385802407|ref|YP_005838807.1| - 0.07 12.1 1.1 0.42 9.6 0.1 2.1 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Ribul_P_3_epim PF00834.14 gi|385802407|ref|YP_005838807.1| - 0.11 11.6 3.1 2.3 7.2 0.2 2.4 2 1 0 2 2 2 0 Ribulose-phosphate 3 epimerase family FMN_dh PF01070.13 gi|385802407|ref|YP_005838807.1| - 0.12 11.2 10.8 0.87 8.3 1.3 2.1 2 0 0 2 2 2 0 FMN-dependent dehydrogenase TPT PF03151.11 gi|385802407|ref|YP_005838807.1| - 0.17 11.5 0.1 0.25 11.0 0.0 1.2 1 0 0 1 1 1 0 Triose-phosphate Transporter family IGPD PF00475.13 gi|385802408|ref|YP_005838808.1| - 8.1e-59 197.6 1.0 1.1e-58 197.2 0.7 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase ACT PF01842.20 gi|385802409|ref|YP_005838809.1| - 1.6e-06 27.4 1.3 3.5e-06 26.3 0.2 2.2 2 1 0 2 2 2 1 ACT domain ACT_7 PF13840.1 gi|385802409|ref|YP_005838809.1| - 0.00045 19.6 0.1 0.0013 18.2 0.0 1.7 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|385802409|ref|YP_005838809.1| - 0.039 14.3 0.4 0.75 10.1 0.0 2.3 2 0 0 2 2 2 0 ACT domain ACT_6 PF13740.1 gi|385802409|ref|YP_005838809.1| - 0.12 12.1 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 ACT domain UPF0029 PF01205.14 gi|385802410|ref|YP_005838810.1| - 5.8e-33 112.8 0.0 1.2e-32 111.9 0.0 1.5 2 0 0 2 2 2 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.6 gi|385802410|ref|YP_005838810.1| - 8.5e-11 41.2 0.4 3.6e-10 39.3 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) EFG_C PF00679.19 gi|385802410|ref|YP_005838810.1| - 0.0015 18.3 0.1 0.0053 16.5 0.0 1.9 2 0 0 2 2 2 1 Elongation factor G C-terminus YscJ_FliF PF01514.12 gi|385802410|ref|YP_005838810.1| - 0.041 13.0 0.0 1.3 8.1 0.0 2.1 2 0 0 2 2 2 0 Secretory protein of YscJ/FliF family UPRTase PF14681.1 gi|385802411|ref|YP_005838811.1| - 1.2e-54 184.6 0.0 1.4e-54 184.4 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|385802411|ref|YP_005838811.1| - 1.2e-06 28.2 0.1 2e-06 27.5 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain CbtB PF09489.5 gi|385802412|ref|YP_005838812.1| - 0.29 11.0 1.9 0.3 11.0 0.5 1.6 1 1 1 2 2 2 0 Probable cobalt transporter subunit (CbtB) DUF4342 PF14242.1 gi|385802413|ref|YP_005838813.1| - 1 9.2 3.8 3.7 7.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4342) TcpE PF12648.2 gi|385802413|ref|YP_005838813.1| - 2.3 8.3 4.3 5.6 7.1 0.3 2.1 2 0 0 2 2 2 0 TcpE family DUF2062 PF09835.4 gi|385802413|ref|YP_005838813.1| - 2.9 7.4 7.1 9.6 5.8 0.2 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2062) zf-RING_3 PF14369.1 gi|385802414|ref|YP_005838814.1| - 8.6e-06 25.6 4.3 8.6e-06 25.6 3.0 1.5 1 1 0 1 1 1 1 zinc-finger NOB1_Zn_bind PF08772.6 gi|385802414|ref|YP_005838814.1| - 0.0018 18.0 0.3 0.0024 17.6 0.2 1.2 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.14 gi|385802414|ref|YP_005838814.1| - 0.0084 15.7 0.5 0.011 15.3 0.4 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|385802414|ref|YP_005838814.1| - 0.024 14.4 2.2 0.032 14.0 1.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-C3HC4_3 PF13920.1 gi|385802414|ref|YP_005838814.1| - 0.052 13.2 0.6 0.081 12.6 0.4 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Zn_Tnp_IS1595 PF12760.2 gi|385802414|ref|YP_005838814.1| - 0.055 13.2 0.7 8.2 6.3 0.0 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|385802414|ref|YP_005838814.1| - 0.056 13.3 2.6 0.1 12.5 1.8 1.5 1 1 0 1 1 1 0 Zinc ribbon domain zf-CHY PF05495.7 gi|385802414|ref|YP_005838814.1| - 0.06 13.5 1.6 0.063 13.4 1.1 1.2 1 0 0 1 1 1 0 CHY zinc finger PhnA_Zn_Ribbon PF08274.7 gi|385802414|ref|YP_005838814.1| - 0.13 12.1 0.6 0.13 12.1 0.4 1.9 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF2197 PF09963.4 gi|385802414|ref|YP_005838814.1| - 0.15 12.0 1.4 0.3 11.0 0.1 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) RNHCP PF12647.2 gi|385802414|ref|YP_005838814.1| - 0.15 11.8 3.5 0.18 11.6 2.4 1.2 1 0 0 1 1 1 0 RNHCP domain zinc-ribbons_6 PF07191.7 gi|385802414|ref|YP_005838814.1| - 0.19 11.5 5.2 3.1 7.6 0.1 2.1 1 1 1 2 2 2 0 zinc-ribbons TFIIS_C PF01096.13 gi|385802414|ref|YP_005838814.1| - 0.21 11.2 1.8 7.8 6.2 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.7 gi|385802414|ref|YP_005838814.1| - 0.61 9.4 6.1 6.1 6.2 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-C4_Topoisom PF01396.14 gi|385802414|ref|YP_005838814.1| - 2 7.9 5.4 0.35 10.4 1.0 1.8 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger cobW PF02492.14 gi|385802415|ref|YP_005838815.1| - 7.5e-51 172.0 0.7 1e-50 171.6 0.5 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.9 gi|385802415|ref|YP_005838815.1| - 1.2e-23 82.6 0.0 2.7e-23 81.4 0.0 1.6 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain GTP_EFTU PF00009.22 gi|385802415|ref|YP_005838815.1| - 0.0001 21.8 0.7 0.25 10.7 0.1 2.6 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain T2SE PF00437.15 gi|385802415|ref|YP_005838815.1| - 0.0016 17.3 0.3 0.0037 16.1 0.2 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein TrwB_AAD_bind PF10412.4 gi|385802415|ref|YP_005838815.1| - 0.0017 17.0 0.0 0.004 15.8 0.0 1.5 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain ArgK PF03308.11 gi|385802415|ref|YP_005838815.1| - 0.0017 17.1 0.5 1.7 7.3 0.0 2.6 3 0 0 3 3 3 2 ArgK protein DUF258 PF03193.11 gi|385802415|ref|YP_005838815.1| - 0.0038 16.4 0.0 0.0082 15.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|385802415|ref|YP_005838815.1| - 0.0046 16.0 0.0 0.011 14.7 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.1 gi|385802415|ref|YP_005838815.1| - 0.006 16.5 1.0 0.025 14.5 0.7 2.1 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.18 gi|385802415|ref|YP_005838815.1| - 0.0066 16.4 0.5 0.07 13.0 0.3 2.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_19 PF13245.1 gi|385802415|ref|YP_005838815.1| - 0.0088 15.7 0.1 0.024 14.3 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_29 PF13555.1 gi|385802415|ref|YP_005838815.1| - 0.013 14.9 0.4 0.059 12.9 0.2 2.1 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|385802415|ref|YP_005838815.1| - 0.015 15.4 0.0 0.034 14.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|385802415|ref|YP_005838815.1| - 0.019 14.6 0.0 0.049 13.2 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_18 PF13238.1 gi|385802415|ref|YP_005838815.1| - 0.019 15.2 1.0 0.12 12.6 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|385802415|ref|YP_005838815.1| - 0.025 14.4 0.0 0.078 12.8 0.0 2.0 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|385802415|ref|YP_005838815.1| - 0.03 14.2 0.0 0.083 12.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|385802415|ref|YP_005838815.1| - 0.033 13.8 0.0 0.11 12.1 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SRPRB PF09439.5 gi|385802415|ref|YP_005838815.1| - 0.037 13.2 0.2 0.11 11.7 0.0 1.8 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Arch_ATPase PF01637.13 gi|385802415|ref|YP_005838815.1| - 0.038 13.6 0.0 0.064 12.9 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_28 PF13521.1 gi|385802415|ref|YP_005838815.1| - 0.045 13.7 0.2 0.16 11.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|385802415|ref|YP_005838815.1| - 0.046 14.2 0.0 0.17 12.3 0.0 2.0 1 0 0 1 1 1 0 Miro-like protein ABC_tran PF00005.22 gi|385802415|ref|YP_005838815.1| - 0.056 13.7 1.8 0.076 13.3 0.0 2.0 2 1 0 2 2 2 0 ABC transporter AAA_10 PF12846.2 gi|385802415|ref|YP_005838815.1| - 0.07 12.5 0.1 0.099 12.0 0.1 1.5 1 1 0 1 1 1 0 AAA-like domain NTPase_1 PF03266.10 gi|385802415|ref|YP_005838815.1| - 0.071 12.8 0.7 0.27 10.9 0.1 2.0 2 0 0 2 2 2 0 NTPase NACHT PF05729.7 gi|385802415|ref|YP_005838815.1| - 0.11 12.1 0.0 0.34 10.5 0.0 1.8 1 0 0 1 1 1 0 NACHT domain AAA_23 PF13476.1 gi|385802415|ref|YP_005838815.1| - 0.32 11.3 2.0 0.46 10.7 0.2 2.0 2 0 0 2 2 2 0 AAA domain SelP_N PF04592.9 gi|385802415|ref|YP_005838815.1| - 0.91 8.8 6.1 1.6 8.0 4.2 1.3 1 0 0 1 1 1 0 Selenoprotein P, N terminal region Arf PF00025.16 gi|385802415|ref|YP_005838815.1| - 1.2 8.3 4.9 7 5.8 0.0 2.9 2 1 0 2 2 2 0 ADP-ribosylation factor family RhoGAP PF00620.22 gi|385802416|ref|YP_005838816.1| - 0.11 12.1 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 RhoGAP domain ArsA_ATPase PF02374.10 gi|385802417|ref|YP_005838817.1| - 3.9e-74 249.4 0.0 4.8e-74 249.1 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|385802417|ref|YP_005838817.1| - 1.4e-11 44.1 0.0 4.2e-11 42.6 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|385802417|ref|YP_005838817.1| - 2.7e-06 27.4 0.0 1.8e-05 24.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|385802417|ref|YP_005838817.1| - 8.7e-05 22.0 0.0 0.0001 21.8 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain AAA_25 PF13481.1 gi|385802417|ref|YP_005838817.1| - 0.034 13.5 3.9 0.046 13.1 1.0 2.4 2 1 0 2 2 2 0 AAA domain Fer4_NifH PF00142.13 gi|385802417|ref|YP_005838817.1| - 0.055 12.6 0.0 0.12 11.5 0.0 1.6 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_18 PF13238.1 gi|385802417|ref|YP_005838817.1| - 0.058 13.6 0.7 0.87 9.8 0.0 2.7 3 1 0 3 3 3 0 AAA domain AAA_17 PF13207.1 gi|385802417|ref|YP_005838817.1| - 0.059 14.2 2.2 0.95 10.2 1.2 2.6 1 1 0 1 1 1 0 AAA domain AAA_26 PF13500.1 gi|385802417|ref|YP_005838817.1| - 0.071 12.7 0.2 0.71 9.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|385802417|ref|YP_005838817.1| - 0.096 11.7 0.1 0.14 11.2 0.1 1.5 1 1 0 1 1 1 0 KaiC SRP54 PF00448.17 gi|385802417|ref|YP_005838817.1| - 0.11 11.9 0.3 0.47 9.8 0.1 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain CstA PF02554.9 gi|385802418|ref|YP_005838818.1| - 3.3e-127 424.2 23.6 3.3e-127 424.2 16.4 2.0 2 0 0 2 2 2 1 Carbon starvation protein CstA DUF4161 PF13722.1 gi|385802418|ref|YP_005838818.1| - 4.6e-31 107.7 1.9 4.6e-31 107.7 1.3 4.0 4 0 0 4 4 4 1 C-terminal domain on CstA (DUF4161) Cupin_2 PF07883.6 gi|385802420|ref|YP_005838820.1| - 4.5e-07 29.2 0.3 1.2e-06 27.8 0.1 1.8 2 0 0 2 2 2 1 Cupin domain MannoseP_isomer PF01050.13 gi|385802420|ref|YP_005838820.1| - 0.021 14.4 0.0 0.024 14.2 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase TrmB PF01978.14 gi|385802423|ref|YP_005838823.1| - 1.7e-14 53.2 0.0 2.3e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|385802423|ref|YP_005838823.1| - 1e-06 28.2 0.2 1.6e-06 27.6 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|385802423|ref|YP_005838823.1| - 2.8e-05 23.7 0.0 5.1e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|385802423|ref|YP_005838823.1| - 4.2e-05 23.7 0.1 6.7e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|385802423|ref|YP_005838823.1| - 0.0014 18.2 0.2 0.0025 17.3 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|385802423|ref|YP_005838823.1| - 0.008 15.6 0.0 0.0095 15.4 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit Phage_rep_org_N PF09681.5 gi|385802423|ref|YP_005838823.1| - 0.013 15.0 0.0 0.024 14.1 0.0 1.5 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_5 PF01022.15 gi|385802423|ref|YP_005838823.1| - 0.015 14.9 0.1 0.024 14.2 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|385802423|ref|YP_005838823.1| - 0.032 13.6 0.0 0.049 13.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|385802423|ref|YP_005838823.1| - 0.058 13.2 0.5 0.1 12.4 0.3 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.16 gi|385802423|ref|YP_005838823.1| - 0.15 11.5 0.4 0.26 10.7 0.3 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family PALP PF00291.20 gi|385802424|ref|YP_005838824.1| - 4.1e-62 210.1 0.4 4.8e-62 209.9 0.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme 2-Hacid_dh_C PF02826.14 gi|385802425|ref|YP_005838825.1| - 2.8e-57 192.7 0.0 4.9e-57 191.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|385802425|ref|YP_005838825.1| - 5.2e-34 116.5 0.5 2.4e-33 114.4 0.8 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.20 gi|385802425|ref|YP_005838825.1| - 9.2e-05 21.8 0.1 0.00049 19.5 0.1 2.4 1 0 0 1 1 1 1 ACT domain NAD_binding_2 PF03446.10 gi|385802425|ref|YP_005838825.1| - 0.00033 20.5 0.8 0.0055 16.5 0.0 2.8 3 0 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase ELFV_dehydrog PF00208.16 gi|385802425|ref|YP_005838825.1| - 0.0014 18.2 0.0 0.0041 16.7 0.0 1.7 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TrkA_N PF02254.13 gi|385802425|ref|YP_005838825.1| - 0.0091 15.9 0.0 0.029 14.3 0.0 1.9 1 0 0 1 1 1 1 TrkA-N domain UDPG_MGDP_dh_C PF03720.10 gi|385802425|ref|YP_005838825.1| - 0.012 15.7 0.0 0.035 14.2 0.0 1.8 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HAD PF12710.2 gi|385802426|ref|YP_005838826.1| - 2.1e-17 63.8 0.4 2.6e-17 63.5 0.3 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|385802426|ref|YP_005838826.1| - 1.2e-12 47.9 0.5 3.3e-08 33.4 0.0 3.0 2 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|385802426|ref|YP_005838826.1| - 1.3e-12 48.5 0.2 7.2e-08 33.1 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|385802426|ref|YP_005838826.1| - 7.9e-06 26.2 0.4 0.00017 21.8 0.1 2.4 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|385802426|ref|YP_005838826.1| - 0.043 12.9 0.0 1.2 8.2 0.0 2.1 2 0 0 2 2 2 0 Putative Phosphatase DUF91 PF01939.11 gi|385802427|ref|YP_005838827.1| - 1.9e-07 30.4 0.0 2.9e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF91 Auto_anti-p27 PF06677.7 gi|385802427|ref|YP_005838827.1| - 2.4e-06 27.1 7.5 0.00047 19.8 0.2 3.5 3 0 0 3 3 3 2 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C4_Topoisom PF01396.14 gi|385802427|ref|YP_005838827.1| - 2.6e-06 26.7 5.2 4.8e-06 25.9 0.0 2.4 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger GFA PF04828.9 gi|385802427|ref|YP_005838827.1| - 0.051 13.5 5.1 1.3 9.0 0.1 2.9 3 1 1 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme zf-ribbon_3 PF13248.1 gi|385802427|ref|YP_005838827.1| - 0.071 12.3 4.9 0.51 9.6 0.1 2.8 3 0 0 3 3 3 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|385802427|ref|YP_005838827.1| - 0.13 12.1 5.8 0.93 9.4 4.0 2.2 1 1 0 1 1 1 0 Rubredoxin zf-Mss51 PF13824.1 gi|385802427|ref|YP_005838827.1| - 0.46 10.3 4.9 2.6 7.9 0.0 3.3 4 0 0 4 4 4 0 Zinc-finger of mitochondrial splicing suppressor 51 A2L_zn_ribbon PF08792.5 gi|385802427|ref|YP_005838827.1| - 0.74 9.3 6.3 4.7 6.7 0.0 3.2 3 0 0 3 3 3 0 A2L zinc ribbon domain zf-IS66 PF13005.2 gi|385802427|ref|YP_005838827.1| - 0.93 9.5 7.0 1.4 8.9 0.1 3.3 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 Zn_ribbon_recom PF13408.1 gi|385802427|ref|YP_005838827.1| - 2.9 8.2 5.4 0.62 10.3 0.4 2.2 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Sec63 PF02889.11 gi|385802428|ref|YP_005838828.1| - 5.2e-29 101.4 0.0 7e-29 101.0 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain DEAD PF00270.24 gi|385802428|ref|YP_005838828.1| - 1.2e-26 93.2 0.0 5.4e-26 91.0 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|385802428|ref|YP_005838828.1| - 1.6e-09 37.5 0.0 6.7e-09 35.4 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|385802428|ref|YP_005838828.1| - 2.5e-07 30.6 0.0 4.3e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|385802428|ref|YP_005838828.1| - 5e-06 26.5 0.4 2.1e-05 24.5 0.3 2.2 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|385802428|ref|YP_005838828.1| - 0.0081 15.6 0.0 0.025 14.1 0.0 1.9 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda INCENP_N PF12178.3 gi|385802428|ref|YP_005838828.1| - 0.019 14.4 0.1 0.2 11.2 0.0 2.4 2 0 0 2 2 2 0 Chromosome passenger complex (CPC) protein INCENP N terminal tRNA_int_endo PF01974.12 gi|385802429|ref|YP_005838829.1| - 2.1e-30 104.3 0.0 3.9e-22 77.8 0.0 2.8 2 1 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|385802429|ref|YP_005838829.1| - 7.7e-28 95.8 0.0 8.5e-13 47.6 0.0 2.5 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain Peptidase_S32 PF05579.8 gi|385802429|ref|YP_005838829.1| - 0.0025 16.8 0.1 0.0037 16.2 0.0 1.2 1 0 0 1 1 1 1 Equine arteritis virus serine endopeptidase S32 tRNA-synt_1b PF00579.20 gi|385802430|ref|YP_005838830.1| - 1e-41 142.9 0.0 1.8e-24 86.3 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) tRNA-synt_2d PF01409.15 gi|385802431|ref|YP_005838831.1| - 6.1e-80 267.9 0.0 7.8e-80 267.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) HTH_27 PF13463.1 gi|385802431|ref|YP_005838831.1| - 1.1e-05 25.5 2.5 0.005 17.1 0.2 2.8 2 0 0 2 2 2 2 Winged helix DNA-binding domain tRNA-synt_2 PF00152.15 gi|385802431|ref|YP_005838831.1| - 2.9e-05 23.0 0.7 0.012 14.4 0.1 2.6 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) HTH_45 PF14947.1 gi|385802431|ref|YP_005838831.1| - 0.0031 17.3 0.1 0.047 13.5 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix Rrf2 PF02082.15 gi|385802431|ref|YP_005838831.1| - 0.015 15.3 0.0 0.041 14.0 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator MarR PF01047.17 gi|385802431|ref|YP_005838831.1| - 0.019 14.6 0.0 0.059 13.0 0.0 1.9 1 0 0 1 1 1 0 MarR family DUF4364 PF14277.1 gi|385802431|ref|YP_005838831.1| - 0.031 13.9 0.3 0.36 10.4 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) B5 PF03484.10 gi|385802432|ref|YP_005838832.1| - 1e-14 54.0 0.1 5.9e-13 48.4 0.0 2.7 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|385802432|ref|YP_005838832.1| - 9.7e-11 41.4 0.0 1.2e-09 37.8 0.0 2.1 1 1 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|385802432|ref|YP_005838832.1| - 0.016 14.4 0.0 0.028 13.6 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class II core domain (F) tRNA-synt_1 PF00133.17 gi|385802433|ref|YP_005838833.1| - 4.4e-122 408.1 0.0 4.1e-121 404.8 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|385802433|ref|YP_005838833.1| - 5.3e-28 97.6 0.0 1.3e-27 96.4 0.0 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|385802433|ref|YP_005838833.1| - 1.3e-25 89.9 1.1 5.4e-13 48.3 0.1 3.5 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|385802433|ref|YP_005838833.1| - 4e-05 22.9 0.0 0.00013 21.3 0.0 1.8 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|385802433|ref|YP_005838833.1| - 4.3e-05 22.8 0.0 0.021 13.9 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|385802433|ref|YP_005838833.1| - 0.00023 19.9 0.1 0.0023 16.6 0.0 2.3 2 1 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|385802433|ref|YP_005838833.1| - 0.053 12.3 0.0 8 5.1 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (R) DNA_ligase_ZBD PF03119.11 gi|385802433|ref|YP_005838833.1| - 0.14 11.9 1.8 6.3 6.5 0.0 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DHO_dh PF01180.16 gi|385802434|ref|YP_005838834.1| - 3.9e-82 275.5 0.0 4.5e-82 275.3 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.10 gi|385802434|ref|YP_005838834.1| - 1.2e-07 31.2 1.3 1.5e-06 27.5 0.9 2.1 1 1 0 1 1 1 1 Nitronate monooxygenase HisG_C PF08029.6 gi|385802434|ref|YP_005838834.1| - 0.11 12.4 0.1 0.55 10.1 0.1 2.1 1 1 0 1 1 1 0 HisG, C-terminal domain Pantoate_transf PF02548.10 gi|385802434|ref|YP_005838834.1| - 0.16 11.0 0.4 0.66 9.0 0.1 1.9 2 0 0 2 2 2 0 Ketopantoate hydroxymethyltransferase SymE_toxin PF08845.5 gi|385802435|ref|YP_005838835.1| - 0.0016 18.2 0.0 0.0017 18.1 0.0 1.1 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system Antitoxin-MazE PF04014.13 gi|385802435|ref|YP_005838835.1| - 0.024 14.3 0.1 0.037 13.7 0.1 1.4 1 0 0 1 1 1 0 Antidote-toxin recognition MazE MC1 PF05854.6 gi|385802436|ref|YP_005838836.1| - 1e-30 105.5 0.2 1.2e-30 105.2 0.1 1.1 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 SQS_PSY PF00494.14 gi|385802437|ref|YP_005838837.1| - 0.012 14.8 0.1 3.4 6.8 0.0 2.0 1 1 1 2 2 2 0 Squalene/phytoene synthase AMMECR1 PF01871.12 gi|385802438|ref|YP_005838838.1| - 7.5e-48 161.8 0.0 8.6e-48 161.6 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 QRPTase_C PF01729.14 gi|385802439|ref|YP_005838839.1| - 7.5e-19 67.8 0.0 1.1e-18 67.3 0.0 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|385802439|ref|YP_005838839.1| - 0.0016 18.2 0.0 0.0039 16.9 0.0 1.7 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Peptidase_MA_2 PF13485.1 gi|385802440|ref|YP_005838840.1| - 3.8e-05 23.7 0.0 0.00014 21.8 0.0 2.1 1 0 0 1 1 1 1 Peptidase MA superfamily Peptidase_M76 PF09768.4 gi|385802440|ref|YP_005838840.1| - 0.0082 15.6 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase M76 family Peptidase_M91 PF14891.1 gi|385802440|ref|YP_005838840.1| - 0.038 14.0 0.3 0.16 12.0 0.2 1.9 1 1 0 1 1 1 0 Effector protein Myco_19_kDa PF05481.7 gi|385802440|ref|YP_005838840.1| - 0.066 13.0 3.6 1 9.1 0.4 2.3 2 0 0 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen Zn_peptidase_2 PF04298.7 gi|385802440|ref|YP_005838840.1| - 0.12 11.7 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 Putative neutral zinc metallopeptidase DUF2981 PF11200.3 gi|385802440|ref|YP_005838840.1| - 0.26 10.3 3.6 0.076 12.0 0.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2981) LPAM_1 PF08139.7 gi|385802440|ref|YP_005838840.1| - 0.29 11.4 0.9 0.47 10.7 0.6 1.3 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Isochorismatase PF00857.15 gi|385802441|ref|YP_005838841.1| - 1e-50 172.1 0.1 1.1e-50 171.9 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Amidohydro_4 PF13147.1 gi|385802442|ref|YP_005838842.1| - 6.8e-30 105.0 7.2 6.9e-29 101.7 5.0 2.0 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|385802442|ref|YP_005838842.1| - 4.1e-20 72.7 0.9 1.2e-19 71.1 0.6 1.9 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|385802442|ref|YP_005838842.1| - 4.2e-14 52.1 0.3 1.4e-13 50.4 0.2 2.0 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|385802442|ref|YP_005838842.1| - 1.7e-07 30.8 5.4 1.5e-06 27.7 1.5 2.2 2 0 0 2 2 2 1 Amidohydrolase family TatD_DNase PF01026.16 gi|385802442|ref|YP_005838842.1| - 0.0011 18.2 0.0 0.0069 15.6 0.0 2.3 1 1 0 1 1 1 1 TatD related DNase DHOase PF12890.2 gi|385802442|ref|YP_005838842.1| - 0.0079 15.8 0.0 0.021 14.4 0.0 1.8 2 0 0 2 2 2 1 Dihydro-orotase-like AP_endonuc_2 PF01261.19 gi|385802442|ref|YP_005838842.1| - 0.017 14.4 0.1 0.027 13.7 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Usp PF00582.21 gi|385802442|ref|YP_005838842.1| - 0.025 14.7 0.1 0.072 13.2 0.0 1.8 1 0 0 1 1 1 0 Universal stress protein family DUF605 PF04652.11 gi|385802443|ref|YP_005838843.1| - 0.16 11.3 8.3 0.036 13.4 3.9 1.5 2 0 0 2 2 2 0 Vta1 like Lin-8 PF03353.10 gi|385802443|ref|YP_005838843.1| - 5.9 6.0 11.8 0.35 10.1 4.8 1.5 2 0 0 2 2 2 0 Ras-mediated vulval-induction antagonist Usp PF00582.21 gi|385802444|ref|YP_005838844.1| - 6e-16 58.9 0.5 1.3e-15 57.8 0.3 1.5 1 1 0 1 1 1 1 Universal stress protein family Alk_phosphatase PF00245.15 gi|385802444|ref|YP_005838844.1| - 0.018 13.7 0.2 0.02 13.5 0.1 1.0 1 0 0 1 1 1 0 Alkaline phosphatase Acetyltransf_1 PF00583.19 gi|385802445|ref|YP_005838845.1| - 2.4e-12 46.7 0.0 3.6e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|385802445|ref|YP_005838845.1| - 4.5e-06 26.8 0.0 5.3e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|385802445|ref|YP_005838845.1| - 8.2e-06 25.4 0.0 1.2e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|385802445|ref|YP_005838845.1| - 1.1e-05 25.5 0.0 1.4e-05 25.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|385802445|ref|YP_005838845.1| - 0.00022 21.3 0.0 0.00033 20.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|385802445|ref|YP_005838845.1| - 0.0084 16.0 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Usp PF00582.21 gi|385802446|ref|YP_005838846.1| - 4e-15 56.2 2.1 5.6e-15 55.7 1.4 1.1 1 0 0 1 1 1 1 Universal stress protein family Usp PF00582.21 gi|385802447|ref|YP_005838847.1| - 4e-32 111.3 0.1 4.6e-32 111.1 0.1 1.1 1 0 0 1 1 1 1 Universal stress protein family Glyco_hydro_3_C PF01915.17 gi|385802447|ref|YP_005838847.1| - 0.013 15.0 0.1 0.016 14.7 0.1 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 3 C-terminal domain DHHA1 PF02272.14 gi|385802448|ref|YP_005838848.1| - 0.0018 17.9 0.1 0.0046 16.6 0.0 1.6 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|385802448|ref|YP_005838848.1| - 0.0052 16.4 0.1 0.024 14.2 0.1 2.0 1 1 0 1 1 1 1 DHH family SURF2 PF05477.6 gi|385802448|ref|YP_005838848.1| - 10 5.1 7.2 4 6.5 2.8 1.8 2 0 0 2 2 2 0 Surfeit locus protein 2 (SURF2) HSP20 PF00011.16 gi|385802450|ref|YP_005838850.1| - 3.7e-14 52.4 0.0 4.7e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family Ribosomal_S6e PF01092.14 gi|385802451|ref|YP_005838851.1| - 1.1e-35 121.9 0.4 1.5e-35 121.6 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S6e Daxx PF03344.10 gi|385802451|ref|YP_005838851.1| - 0.33 9.3 9.1 0.37 9.2 6.3 1.1 1 0 0 1 1 1 0 Daxx Family Nop14 PF04147.7 gi|385802451|ref|YP_005838851.1| - 4.9 4.9 12.7 3.8 5.3 8.8 1.1 1 0 0 1 1 1 0 Nop14-like family Cwf_Cwc_15 PF04889.7 gi|385802451|ref|YP_005838851.1| - 5.3 6.6 8.5 7.9 6.1 5.9 1.3 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein Response_reg PF00072.19 gi|385802454|ref|YP_005838854.1| - 1.6e-20 73.2 0.0 6.1e-20 71.3 0.0 2.0 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.21 gi|385802454|ref|YP_005838854.1| - 2e-17 62.9 0.1 5.9e-17 61.3 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|385802454|ref|YP_005838854.1| - 4.6e-15 55.8 0.4 2.1e-11 44.1 0.0 3.2 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.6 gi|385802454|ref|YP_005838854.1| - 2.3e-13 50.0 0.0 1.7e-06 28.0 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|385802454|ref|YP_005838854.1| - 2.7e-11 43.4 0.1 1.5e-07 31.4 0.0 3.2 2 0 0 2 2 2 2 PAS fold HisKA PF00512.20 gi|385802454|ref|YP_005838854.1| - 1.7e-10 40.6 0.2 1.7e-10 40.6 0.2 3.8 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|385802454|ref|YP_005838854.1| - 8.2e-09 36.1 0.9 2e-08 34.8 0.7 1.7 1 0 0 1 1 1 1 GAF domain PAS PF00989.19 gi|385802454|ref|YP_005838854.1| - 1.4e-07 31.2 0.1 0.00032 20.4 0.0 3.0 2 0 0 2 2 2 2 PAS fold GAF_3 PF13492.1 gi|385802454|ref|YP_005838854.1| - 1.6e-07 31.4 0.1 3.2e-07 30.4 0.1 1.5 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.1 gi|385802454|ref|YP_005838854.1| - 9.9e-06 25.2 0.0 6.4e-05 22.6 0.0 2.4 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|385802454|ref|YP_005838854.1| - 0.0033 17.1 0.1 0.025 14.3 0.0 2.4 2 1 0 2 2 2 1 Histidine kinase-like ATPase domain Peptidase_M29 PF02073.10 gi|385802455|ref|YP_005838855.1| - 4.8e-110 368.0 1.1 5.4e-110 367.8 0.8 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) X PF00739.14 gi|385802455|ref|YP_005838855.1| - 0.11 12.4 0.0 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 Trans-activation protein X NAD_binding_2 PF03446.10 gi|385802456|ref|YP_005838856.1| - 1.2e-33 116.2 0.1 1.7e-33 115.7 0.1 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.14 gi|385802456|ref|YP_005838856.1| - 1.9e-22 79.8 0.0 2.5e-22 79.4 0.0 1.2 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain NAD_binding_11 PF14833.1 gi|385802456|ref|YP_005838856.1| - 1.9e-05 24.6 0.2 0.032 14.2 0.0 3.1 2 1 1 3 3 3 2 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.12 gi|385802456|ref|YP_005838856.1| - 8e-05 23.0 0.1 0.00014 22.1 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|385802456|ref|YP_005838856.1| - 0.00018 21.4 0.1 0.00042 20.2 0.0 1.7 2 0 0 2 2 2 1 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|385802456|ref|YP_005838856.1| - 0.0002 20.5 0.0 0.0003 20.0 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|385802456|ref|YP_005838856.1| - 0.0012 18.5 0.2 0.0018 17.9 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|385802456|ref|YP_005838856.1| - 0.048 13.0 0.0 0.069 12.5 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DapB_N PF01113.15 gi|385802456|ref|YP_005838856.1| - 0.094 12.6 1.1 0.28 11.0 0.8 1.8 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Fer2 PF00111.22 gi|385802457|ref|YP_005838857.1| - 4.3e-12 45.6 0.5 7.7e-12 44.8 0.4 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DUF3784 PF12650.2 gi|385802458|ref|YP_005838858.1| - 0.00071 19.4 1.3 0.0015 18.4 0.4 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF3784) YtpI PF14007.1 gi|385802458|ref|YP_005838858.1| - 0.017 15.0 0.2 0.017 15.0 0.2 2.6 3 0 0 3 3 3 0 YtpI-like protein DUF2231 PF09990.4 gi|385802458|ref|YP_005838858.1| - 0.5 10.7 3.9 11 6.4 0.1 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2231) PepSY_TM_2 PF13703.1 gi|385802458|ref|YP_005838858.1| - 4.9 7.4 8.3 8 6.7 1.6 2.4 1 1 1 2 2 2 0 PepSY-associated TM helix DUF3040 PF11239.3 gi|385802458|ref|YP_005838858.1| - 9.4 6.3 9.0 3.6 7.6 1.2 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF3040) HTH_3 PF01381.17 gi|385802459|ref|YP_005838859.1| - 4e-13 49.0 0.0 5.2e-13 48.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|385802459|ref|YP_005838859.1| - 1.1e-08 35.0 0.0 1.8e-08 34.3 0.0 1.3 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|385802459|ref|YP_005838859.1| - 3.4e-06 27.1 0.0 4.1e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.1 gi|385802459|ref|YP_005838859.1| - 8.9e-05 22.6 0.0 0.0001 22.4 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|385802459|ref|YP_005838859.1| - 0.00044 19.9 0.0 0.0006 19.5 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|385802459|ref|YP_005838859.1| - 0.0042 16.7 0.0 0.0066 16.0 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_25 PF13413.1 gi|385802459|ref|YP_005838859.1| - 0.006 16.1 0.0 0.0075 15.8 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4322 PF14210.1 gi|385802459|ref|YP_005838859.1| - 0.15 11.5 0.1 0.24 10.8 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4322) DUF2178 PF09946.4 gi|385802460|ref|YP_005838860.1| - 0.00012 21.7 0.4 0.0013 18.4 0.1 2.1 1 1 1 2 2 2 1 Predicted membrane protein (DUF2178) DUF2919 PF11143.3 gi|385802460|ref|YP_005838860.1| - 0.038 13.8 1.2 0.16 11.8 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2919) DUF3040 PF11239.3 gi|385802460|ref|YP_005838860.1| - 0.5 10.4 13.5 0.88 9.6 1.7 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3040) DoxX PF07681.7 gi|385802460|ref|YP_005838860.1| - 0.57 10.6 8.4 0.48 10.8 2.3 2.4 2 0 0 2 2 2 0 DoxX HTH_23 PF13384.1 gi|385802461|ref|YP_005838861.1| - 1.3e-05 24.6 0.1 4.5e-05 22.9 0.0 2.0 2 1 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.1 gi|385802461|ref|YP_005838861.1| - 0.00017 21.6 0.1 0.00036 20.6 0.1 1.6 1 1 1 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.1 gi|385802461|ref|YP_005838861.1| - 0.00032 20.6 0.0 0.00087 19.2 0.0 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|385802461|ref|YP_005838861.1| - 0.0026 17.5 0.0 0.0065 16.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Ribosomal_L21e PF01157.13 gi|385802461|ref|YP_005838861.1| - 0.01 15.6 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L21e HTH_3 PF01381.17 gi|385802461|ref|YP_005838861.1| - 0.02 14.7 0.0 0.18 11.6 0.0 2.2 1 1 1 2 2 2 0 Helix-turn-helix Phage_NinH PF06322.6 gi|385802461|ref|YP_005838861.1| - 0.025 14.2 0.2 0.044 13.4 0.1 1.4 1 0 0 1 1 1 0 Phage NinH protein HTH_11 PF08279.7 gi|385802461|ref|YP_005838861.1| - 0.032 13.8 0.2 0.66 9.6 0.0 2.2 1 1 1 2 2 2 0 HTH domain HTH_8 PF02954.14 gi|385802461|ref|YP_005838861.1| - 0.055 13.0 0.0 0.11 12.0 0.0 1.5 1 1 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_36 PF13730.1 gi|385802461|ref|YP_005838861.1| - 0.082 13.0 0.0 1.2 9.3 0.0 2.5 2 1 1 3 3 3 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|385802461|ref|YP_005838861.1| - 0.12 11.6 0.1 0.5 9.7 0.0 2.1 1 1 2 3 3 3 0 Sigma-70, region 4 GerE PF00196.14 gi|385802461|ref|YP_005838861.1| - 0.13 11.5 0.0 0.26 10.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_28 PF13518.1 gi|385802462|ref|YP_005838862.1| - 0.0034 17.3 0.1 0.0094 15.9 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|385802462|ref|YP_005838862.1| - 0.0064 16.6 0.0 0.041 14.0 0.0 2.2 3 0 0 3 3 3 1 Winged helix-turn helix TrmB PF01978.14 gi|385802462|ref|YP_005838862.1| - 0.026 14.2 0.0 0.12 12.1 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|385802462|ref|YP_005838862.1| - 0.049 13.2 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain NTP_transf_5 PF14907.1 gi|385802463|ref|YP_005838863.1| - 1.2e-05 24.8 0.1 2.3e-05 23.8 0.0 1.4 1 1 0 1 1 1 1 Uncharacterised nucleotidyltransferase DUF1814 PF08843.6 gi|385802463|ref|YP_005838863.1| - 0.0003 20.6 1.1 0.0005 19.9 0.7 1.3 1 1 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF1814) DUF2202 PF09968.4 gi|385802463|ref|YP_005838863.1| - 0.071 12.7 0.2 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein domain (DUF2202) RHH_1 PF01402.16 gi|385802465|ref|YP_005838865.1| - 0.0011 18.7 0.0 0.0036 17.1 0.0 1.8 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF3960 PF13142.1 gi|385802465|ref|YP_005838865.1| - 0.033 13.9 0.0 0.045 13.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3960) CsgG PF03783.9 gi|385802465|ref|YP_005838865.1| - 0.058 12.4 0.1 0.061 12.3 0.1 1.0 1 0 0 1 1 1 0 Curli production assembly/transport component CsgG Plasmid_stabil PF05016.9 gi|385802466|ref|YP_005838866.1| - 0.00039 20.7 0.0 0.0005 20.4 0.0 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Ion_trans PF00520.26 gi|385802469|ref|YP_005838869.1| - 6.5e-20 71.2 7.0 1e-19 70.5 4.9 1.3 1 0 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.11 gi|385802469|ref|YP_005838869.1| - 1.2e-12 47.3 1.3 1.2e-12 47.3 0.9 2.0 3 0 0 3 3 3 1 Ion channel zf-ribbon_3 PF13248.1 gi|385802469|ref|YP_005838869.1| - 0.011 14.9 0.1 0.017 14.3 0.0 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|385802469|ref|YP_005838869.1| - 0.054 13.0 0.3 0.089 12.3 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbon domain HXXEE PF13787.1 gi|385802469|ref|YP_005838869.1| - 0.36 11.2 3.9 0.85 9.9 0.4 2.5 2 0 0 2 2 2 0 Protein of unknown function with HXXEE motif Glug PF07581.7 gi|385802470|ref|YP_005838870.1| - 3.6e-111 356.2 944.9 0.00071 19.6 0.8 112.3 110 2 2 112 112 112 74 The GLUG motif HHH_5 PF14520.1 gi|385802470|ref|YP_005838870.1| - 4.7e-10 39.4 0.7 0.034 14.3 0.0 3.7 3 0 0 3 3 3 3 Helix-hairpin-helix domain Peptidase_M26_N PF05342.9 gi|385802470|ref|YP_005838870.1| - 6.2e-08 31.9 20.8 0.39 9.6 0.3 7.0 6 0 0 6 6 6 6 M26 IgA1-specific Metallo-endopeptidase N-terminal region DUF4332 PF14229.1 gi|385802470|ref|YP_005838870.1| - 3.1e-07 30.3 0.2 0.7 9.8 0.0 3.5 3 0 0 3 3 3 3 Domain of unknown function (DUF4332) Cdd1 PF11731.3 gi|385802470|ref|YP_005838870.1| - 0.0027 17.6 0.0 0.94 9.4 0.0 2.9 3 0 0 3 3 3 1 Pathogenicity locus Sec63 PF02889.11 gi|385802470|ref|YP_005838870.1| - 2.3 7.3 0.0 6.1 5.9 0.0 1.7 1 0 0 1 1 1 0 Sec63 Brl domain Fer4_12 PF13353.1 gi|385802470|ref|YP_005838870.1| - 4.2 7.4 0.0 10 6.2 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain Ephrin_lbd PF01404.14 gi|385802470|ref|YP_005838870.1| - 6.7 6.4 0.6 82 2.9 0.0 2.4 2 0 0 2 2 2 0 Ephrin receptor ligand binding domain Mur_ligase_M PF08245.7 gi|385802471|ref|YP_005838871.1| - 0.00048 20.2 0.0 0.001 19.1 0.0 1.5 1 1 0 1 1 1 1 Mur ligase middle domain Caps_synth_CapC PF14102.1 gi|385802472|ref|YP_005838872.1| - 3.8e-09 36.7 35.6 4.5e-08 33.2 5.5 3.2 4 0 0 4 4 4 2 Capsule biosynthesis CapC HTH_10 PF04967.7 gi|385802474|ref|YP_005838874.1| - 4.1e-10 39.0 0.0 9.8e-10 37.8 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain PAS_8 PF13188.1 gi|385802474|ref|YP_005838874.1| - 1.1e-06 28.2 0.0 0.0018 18.0 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|385802474|ref|YP_005838874.1| - 1.6e-05 24.6 0.0 0.055 13.2 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|385802474|ref|YP_005838874.1| - 0.0039 17.1 0.0 0.083 12.9 0.0 2.6 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|385802474|ref|YP_005838874.1| - 0.012 15.9 0.0 1.2 9.5 0.0 2.7 2 0 0 2 2 2 0 PAS domain Pox_A14 PF05767.7 gi|385802474|ref|YP_005838874.1| - 8.5 6.4 6.4 0.77 9.7 0.2 2.3 3 0 0 3 3 3 0 Poxvirus virion envelope protein A14 Pyr_redox_2 PF07992.9 gi|385802475|ref|YP_005838875.1| - 2.2e-20 73.3 0.0 3.4e-20 72.7 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|385802475|ref|YP_005838875.1| - 9e-10 38.8 0.6 5.1e-08 33.2 0.0 3.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|385802475|ref|YP_005838875.1| - 1.1e-08 35.0 0.0 4.5e-08 33.0 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.1 gi|385802475|ref|YP_005838875.1| - 3.2e-07 30.6 0.2 3.3e-06 27.3 0.1 2.5 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|385802475|ref|YP_005838875.1| - 1e-05 25.4 0.0 0.00086 19.2 0.0 2.6 2 0 0 2 2 2 1 TrkA-N domain Semialdhyde_dh PF01118.19 gi|385802475|ref|YP_005838875.1| - 6.6e-05 23.1 0.1 0.044 14.0 0.0 3.0 3 0 0 3 3 3 1 Semialdehyde dehydrogenase, NAD binding domain GIDA PF01134.17 gi|385802475|ref|YP_005838875.1| - 0.00019 20.4 2.5 0.22 10.3 0.0 3.0 2 1 0 2 2 2 2 Glucose inhibited division protein A ThiF PF00899.16 gi|385802475|ref|YP_005838875.1| - 0.025 14.4 0.1 2.7 7.8 0.0 2.5 2 0 0 2 2 2 0 ThiF family Saccharop_dh PF03435.13 gi|385802475|ref|YP_005838875.1| - 0.027 13.4 0.0 1.4 7.8 0.0 2.2 2 0 0 2 2 2 0 Saccharopine dehydrogenase DUF457 PF04307.9 gi|385802476|ref|YP_005838876.1| - 2.5e-07 30.1 8.8 4.5e-07 29.3 6.1 1.4 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF4131 PF13567.1 gi|385802477|ref|YP_005838877.1| - 0.016 14.6 0.2 0.27 10.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) MarR_2 PF12802.2 gi|385802478|ref|YP_005838878.1| - 4.6e-08 32.6 0.0 9e-08 31.6 0.0 1.5 1 1 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|385802478|ref|YP_005838878.1| - 1.1e-07 31.2 0.0 2.9e-07 29.9 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|385802478|ref|YP_005838878.1| - 3.1e-07 29.9 0.0 5.2e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|385802478|ref|YP_005838878.1| - 3.2e-06 26.7 0.0 6.3e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|385802478|ref|YP_005838878.1| - 1e-05 25.2 0.0 2e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|385802478|ref|YP_005838878.1| - 2.3e-05 23.6 0.0 0.00011 21.4 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|385802478|ref|YP_005838878.1| - 0.0001 21.8 0.0 0.00017 21.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.12 gi|385802478|ref|YP_005838878.1| - 0.0039 16.6 0.0 0.006 16.0 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_36 PF13730.1 gi|385802478|ref|YP_005838878.1| - 0.0065 16.5 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|385802478|ref|YP_005838878.1| - 0.0071 16.6 0.0 0.021 15.1 0.0 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|385802478|ref|YP_005838878.1| - 0.025 14.2 0.0 0.048 13.3 0.0 1.4 1 0 0 1 1 1 0 HTH domain GntR PF00392.16 gi|385802478|ref|YP_005838878.1| - 0.03 13.7 0.0 0.054 12.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family FeoC PF09012.5 gi|385802478|ref|YP_005838878.1| - 0.05 13.3 0.0 0.14 11.8 0.0 1.7 2 0 0 2 2 2 0 FeoC like transcriptional regulator HTH_23 PF13384.1 gi|385802478|ref|YP_005838878.1| - 0.057 13.0 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|385802478|ref|YP_005838878.1| - 0.062 13.1 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_DeoR PF08220.7 gi|385802478|ref|YP_005838878.1| - 0.084 12.4 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF2576 PF10845.3 gi|385802478|ref|YP_005838878.1| - 0.091 11.9 1.5 0.16 11.1 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2576) HTH_38 PF13936.1 gi|385802478|ref|YP_005838878.1| - 0.16 11.5 0.0 0.31 10.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain NAD_synthase PF02540.12 gi|385802480|ref|YP_005838880.1| - 2.4e-82 275.4 0.0 2.9e-82 275.2 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|385802480|ref|YP_005838880.1| - 4e-07 28.9 0.0 0.00022 19.8 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|385802480|ref|YP_005838880.1| - 2.9e-06 26.9 0.0 3.3e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|385802480|ref|YP_005838880.1| - 4.2e-05 22.9 0.0 0.00013 21.2 0.0 1.8 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC Aldo_ket_red PF00248.16 gi|385802482|ref|YP_005838882.1| - 7.3e-46 156.2 0.0 8.5e-46 156.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Chlor_dismutase PF06778.7 gi|385802483|ref|YP_005838883.1| - 1.2e-57 194.7 0.0 2.4e-57 193.7 0.0 1.5 1 0 0 1 1 1 1 Chlorite dismutase ABM PF03992.11 gi|385802483|ref|YP_005838883.1| - 9.3e-07 28.7 5.8 2.1e-06 27.6 0.0 3.3 3 0 0 3 3 3 1 Antibiotic biosynthesis monooxygenase Peptidase_M50 PF02163.17 gi|385802484|ref|YP_005838884.1| - 1.4e-26 92.6 0.0 5.2e-26 90.8 0.0 2.0 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|385802484|ref|YP_005838884.1| - 7.7e-18 64.1 0.3 2.9e-08 33.4 0.1 2.4 2 0 0 2 2 2 2 PDZ domain Tricorn_PDZ PF14685.1 gi|385802484|ref|YP_005838884.1| - 2e-12 46.7 1.2 1.3e-05 24.9 0.1 2.6 2 0 0 2 2 2 2 Tricorn protease PDZ domain PDZ PF00595.19 gi|385802484|ref|YP_005838884.1| - 5.6e-09 36.0 0.2 0.00038 20.5 0.1 2.6 2 0 0 2 2 2 2 PDZ domain (Also known as DHR or GLGF) tRNA-synt_1f PF01921.13 gi|385802486|ref|YP_005838886.1| - 8.1e-99 330.6 0.0 1.1e-98 330.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|385802486|ref|YP_005838886.1| - 4e-06 25.7 0.0 0.00015 20.5 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|385802486|ref|YP_005838886.1| - 0.0056 15.8 0.0 0.019 14.1 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain AA_kinase PF00696.23 gi|385802487|ref|YP_005838887.1| - 6.5e-25 88.0 5.0 8.3e-25 87.7 3.5 1.1 1 0 0 1 1 1 1 Amino acid kinase family Phosphonate-bd PF12974.2 gi|385802487|ref|YP_005838887.1| - 0.062 12.6 1.5 0.23 10.8 0.0 2.3 2 1 0 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein MoaE PF02391.12 gi|385802488|ref|YP_005838888.1| - 2.2e-23 82.2 0.1 3.4e-23 81.6 0.1 1.3 1 0 0 1 1 1 1 MoaE protein Peptidase_M50 PF02163.17 gi|385802490|ref|YP_005838890.1| - 5.6e-17 61.3 5.8 2.8e-16 59.0 2.3 2.6 2 1 0 2 2 2 1 Peptidase family M50 AIRS PF00586.19 gi|385802491|ref|YP_005838891.1| - 2.3e-17 63.0 2.6 2.3e-17 63.0 1.8 2.1 3 0 0 3 3 3 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|385802491|ref|YP_005838891.1| - 1.8e-08 34.5 0.1 2.8e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Septum_form PF13845.1 gi|385802491|ref|YP_005838891.1| - 0.071 12.6 0.0 0.16 11.4 0.0 1.5 2 0 0 2 2 2 0 Septum formation UPF0104 PF03706.8 gi|385802492|ref|YP_005838892.1| - 8.1e-38 130.3 33.6 1.3e-37 129.7 23.3 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Per1 PF04080.8 gi|385802492|ref|YP_005838892.1| - 0.0016 17.9 2.9 0.0097 15.3 0.3 2.1 2 0 0 2 2 2 2 Per1-like Ribosomal_S19e PF01090.14 gi|385802493|ref|YP_005838893.1| - 1.8e-48 163.5 0.0 2.1e-48 163.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e GntR PF00392.16 gi|385802493|ref|YP_005838893.1| - 3.2e-05 23.2 0.1 0.00091 18.6 0.1 2.5 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family Mrr_N PF14338.1 gi|385802493|ref|YP_005838893.1| - 0.017 15.2 0.0 0.28 11.2 0.0 2.1 2 0 0 2 2 2 0 Mrr N-terminal domain Ftsk_gamma PF09397.5 gi|385802493|ref|YP_005838893.1| - 0.03 14.0 0.1 1.1 9.0 0.0 2.8 3 0 0 3 3 3 0 Ftsk gamma domain Palm_thioest PF02089.10 gi|385802493|ref|YP_005838893.1| - 0.051 12.4 0.0 0.064 12.1 0.0 1.1 1 0 0 1 1 1 0 Palmitoyl protein thioesterase Rrf2 PF02082.15 gi|385802493|ref|YP_005838893.1| - 0.062 13.4 0.1 0.19 11.8 0.0 1.8 1 1 1 2 2 2 0 Transcriptional regulator dsDNA_bind PF01984.15 gi|385802494|ref|YP_005838894.1| - 7.1e-27 93.4 15.3 8.5e-27 93.2 10.6 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain FliG_C PF01706.11 gi|385802494|ref|YP_005838894.1| - 0.11 12.4 0.2 0.11 12.4 0.1 2.2 2 1 0 2 2 2 0 FliG C-terminal domain PA26 PF04636.8 gi|385802494|ref|YP_005838894.1| - 0.14 10.7 2.0 0.16 10.6 1.4 1.0 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) Caps_synth_GfcC PF06251.6 gi|385802494|ref|YP_005838894.1| - 0.52 9.4 7.9 0.66 9.1 5.5 1.1 1 0 0 1 1 1 0 Capsule biosynthesis GfcC DUF2188 PF09954.4 gi|385802494|ref|YP_005838894.1| - 0.74 9.7 5.6 0.73 9.7 2.2 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2188) Hid1 PF12722.2 gi|385802494|ref|YP_005838894.1| - 1.1 6.8 7.6 1.2 6.7 5.3 1.0 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein Rotamase_2 PF13145.1 gi|385802494|ref|YP_005838894.1| - 1.7 9.2 8.4 2.1 8.9 5.8 1.3 1 1 0 1 1 1 0 PPIC-type PPIASE domain APC_CDC26 PF10471.4 gi|385802494|ref|YP_005838894.1| - 3.3 8.5 16.1 32 5.3 11.1 2.1 1 1 0 1 1 1 0 Anaphase-promoting complex APC subunit 1 DUF4404 PF14357.1 gi|385802494|ref|YP_005838894.1| - 8.5 6.8 10.7 5.1 7.5 5.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) Syntaxin_2 PF14523.1 gi|385802494|ref|YP_005838894.1| - 9 6.3 9.4 6.1 6.9 3.6 2.0 1 1 1 2 2 2 0 Syntaxin-like protein Mnd1 PF03962.10 gi|385802494|ref|YP_005838894.1| - 9.1 5.8 11.1 7.7 6.1 6.8 1.4 1 1 0 1 1 1 0 Mnd1 family Asn_synthase PF00733.16 gi|385802495|ref|YP_005838895.1| - 2.1e-05 24.1 0.5 7.5e-05 22.3 0.1 1.8 1 1 1 2 2 2 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|385802495|ref|YP_005838895.1| - 0.0069 14.9 0.1 0.027 13.0 0.1 1.8 1 1 0 1 1 1 1 tRNA methyl transferase ATP_bind_4 PF01902.12 gi|385802495|ref|YP_005838895.1| - 0.01 15.2 0.1 0.019 14.3 0.1 1.4 1 1 0 1 1 1 0 ATP-binding region NAD_synthase PF02540.12 gi|385802495|ref|YP_005838895.1| - 0.031 13.1 0.0 0.046 12.6 0.0 1.3 1 0 0 1 1 1 0 NAD synthase PAPS_reduct PF01507.14 gi|385802495|ref|YP_005838895.1| - 0.04 13.7 0.0 0.24 11.2 0.0 1.9 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family QueC PF06508.8 gi|385802495|ref|YP_005838895.1| - 0.1 11.8 0.0 0.2 10.8 0.0 1.4 1 1 0 1 1 1 0 Queuosine biosynthesis protein QueC tRNA-synt_His PF13393.1 gi|385802496|ref|YP_005838896.1| - 1.4e-47 162.2 0.0 1.7e-47 161.9 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|385802496|ref|YP_005838896.1| - 1.8e-20 73.2 0.0 2.6e-20 72.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|385802496|ref|YP_005838896.1| - 2.8e-12 46.4 0.5 6.2e-12 45.3 0.1 1.8 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2d PF01409.15 gi|385802496|ref|YP_005838896.1| - 0.077 12.1 0.0 0.16 11.1 0.0 1.5 1 1 0 1 1 1 0 tRNA synthetases class II core domain (F) PseudoU_synth_1 PF01416.15 gi|385802497|ref|YP_005838897.1| - 2.2e-23 82.7 0.0 6.2e-11 42.6 0.0 2.3 2 0 0 2 2 2 2 tRNA pseudouridine synthase zf-ribbon_3 PF13248.1 gi|385802498|ref|YP_005838898.1| - 0.00071 18.7 1.3 0.58 9.4 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|385802498|ref|YP_005838898.1| - 0.0008 19.0 1.4 0.093 12.4 0.1 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|385802498|ref|YP_005838898.1| - 0.00088 19.0 0.2 0.0012 18.6 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon PhnA_Zn_Ribbon PF08274.7 gi|385802498|ref|YP_005838898.1| - 0.0069 16.1 1.6 0.26 11.0 0.0 2.1 2 0 0 2 2 2 1 PhnA Zinc-Ribbon FYVE PF01363.16 gi|385802498|ref|YP_005838898.1| - 0.014 15.3 0.7 0.022 14.6 0.5 1.4 1 1 0 1 1 1 0 FYVE zinc finger TF_Zn_Ribbon PF08271.7 gi|385802498|ref|YP_005838898.1| - 0.02 14.1 1.1 1.6 8.1 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-NADH-PPase PF09297.6 gi|385802498|ref|YP_005838898.1| - 0.045 13.2 2.7 0.96 9.0 0.1 2.5 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ISL3 PF14690.1 gi|385802498|ref|YP_005838898.1| - 0.058 13.4 0.9 4.9 7.2 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Prok-RING_1 PF14446.1 gi|385802498|ref|YP_005838898.1| - 0.14 11.9 1.6 1.2 8.9 0.2 2.0 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.1 gi|385802498|ref|YP_005838898.1| - 0.2 11.1 5.2 2.7 7.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|385802498|ref|YP_005838898.1| - 0.24 11.1 5.7 0.83 9.3 4.0 1.8 1 1 0 1 1 1 0 Nudix N-terminal zf-HYPF PF07503.7 gi|385802498|ref|YP_005838898.1| - 0.27 10.6 2.2 2.6 7.5 0.2 2.2 2 0 0 2 2 2 0 HypF finger Sgf11 PF08209.6 gi|385802498|ref|YP_005838898.1| - 0.29 10.4 2.6 9.2 5.6 0.1 2.3 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Zn-ribbon_8 PF09723.5 gi|385802498|ref|YP_005838898.1| - 0.53 10.2 5.6 4.3 7.3 3.6 2.1 1 1 0 1 1 1 0 Zinc ribbon domain DUF35_N PF12172.3 gi|385802498|ref|YP_005838898.1| - 1.1 9.2 5.0 10 6.2 0.0 2.4 2 1 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF1610 PF07754.6 gi|385802498|ref|YP_005838898.1| - 1.2 9.3 5.9 6.1 7.0 0.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-IS66 PF13005.2 gi|385802498|ref|YP_005838898.1| - 3.5 7.6 5.8 2.9 7.9 0.2 2.4 2 2 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn_Tnp_IS1595 PF12760.2 gi|385802498|ref|YP_005838898.1| - 4 7.3 5.7 4.5 7.1 0.4 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain RecR PF02132.10 gi|385802498|ref|YP_005838898.1| - 4.2 6.8 7.4 15 5.1 5.1 1.8 1 1 0 1 1 1 0 RecR protein zf-RING_3 PF14369.1 gi|385802498|ref|YP_005838898.1| - 4.5 7.3 6.6 38 4.3 4.3 2.2 1 1 0 1 1 1 0 zinc-finger Peptidase_M3 PF01432.15 gi|385802499|ref|YP_005838899.1| - 5.1e-70 236.7 4.1 5.6e-70 236.6 0.5 2.0 2 0 0 2 2 2 1 Peptidase family M3 Peptidase_M3_N PF08439.5 gi|385802499|ref|YP_005838899.1| - 7.9e-24 83.4 0.1 8.2e-23 80.2 0.1 2.9 3 0 0 3 3 3 1 Oligopeptidase F MCR_beta_N PF02783.10 gi|385802499|ref|YP_005838899.1| - 0.087 12.2 0.1 0.19 11.1 0.1 1.6 1 0 0 1 1 1 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain IncA PF04156.9 gi|385802499|ref|YP_005838899.1| - 6.4 6.3 7.5 4.9 6.7 3.5 2.0 2 0 0 2 2 2 0 IncA protein DUF3020 PF11223.3 gi|385802503|ref|YP_005838903.1| - 0.008 16.5 2.2 0.012 16.0 1.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3020) NIR_SIR PF01077.17 gi|385802505|ref|YP_005838905.1| - 4.4e-38 130.1 0.0 1.5e-26 92.5 0.0 2.5 3 0 0 3 3 3 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|385802505|ref|YP_005838905.1| - 6.2e-35 118.6 0.0 1.5e-16 59.7 0.0 3.2 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain DUF2993 PF11209.3 gi|385802506|ref|YP_005838906.1| - 0.037 13.9 0.8 0.05 13.5 0.5 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2993) HTH_AsnC-type PF13404.1 gi|385802507|ref|YP_005838907.1| - 2.5e-16 58.9 0.7 5.7e-16 57.7 0.5 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|385802507|ref|YP_005838907.1| - 9.8e-16 56.8 0.1 1.4e-15 56.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|385802507|ref|YP_005838907.1| - 6.7e-05 22.4 0.0 0.00011 21.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|385802507|ref|YP_005838907.1| - 0.00012 21.7 0.0 0.00018 21.1 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|385802507|ref|YP_005838907.1| - 0.0002 20.9 0.1 0.00034 20.2 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_Tnp_ISL3 PF13542.1 gi|385802507|ref|YP_005838907.1| - 0.00081 18.5 0.0 0.0018 17.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_27 PF13463.1 gi|385802507|ref|YP_005838907.1| - 0.0017 18.6 0.3 0.0036 17.6 0.1 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|385802507|ref|YP_005838907.1| - 0.0021 17.9 0.0 0.028 14.4 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_20 PF12840.2 gi|385802507|ref|YP_005838907.1| - 0.0042 16.8 0.0 0.0079 15.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|385802507|ref|YP_005838907.1| - 0.0057 16.3 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB zf-FCS PF06467.9 gi|385802507|ref|YP_005838907.1| - 0.0089 15.6 2.5 0.014 14.9 1.7 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif HTH_23 PF13384.1 gi|385802507|ref|YP_005838907.1| - 0.009 15.6 0.1 0.15 11.7 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain ATPase-cat_bd PF12156.3 gi|385802507|ref|YP_005838907.1| - 0.016 15.7 2.6 0.033 14.7 1.8 1.5 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase Fe_dep_repress PF01325.14 gi|385802507|ref|YP_005838907.1| - 0.027 14.3 0.0 0.044 13.7 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain RNHCP PF12647.2 gi|385802507|ref|YP_005838907.1| - 0.034 13.9 0.5 0.06 13.1 0.4 1.3 1 0 0 1 1 1 0 RNHCP domain HTH_1 PF00126.22 gi|385802507|ref|YP_005838907.1| - 0.035 13.8 0.0 0.074 12.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Mga PF08280.6 gi|385802507|ref|YP_005838907.1| - 0.04 13.6 0.0 0.064 13.0 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Arc_trans_TRASH PF08394.5 gi|385802507|ref|YP_005838907.1| - 0.044 13.9 2.7 0.088 12.9 1.8 1.6 1 0 0 1 1 1 0 Archaeal TRASH domain HTH_IclR PF09339.5 gi|385802507|ref|YP_005838907.1| - 0.049 13.2 0.0 0.082 12.5 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|385802507|ref|YP_005838907.1| - 0.11 12.1 0.1 0.17 11.5 0.1 1.4 1 0 0 1 1 1 0 HTH domain zf-H2C2_2 PF13465.1 gi|385802507|ref|YP_005838907.1| - 0.32 11.3 2.0 0.67 10.3 0.5 2.0 2 0 0 2 2 2 0 Zinc-finger double domain E1-E2_ATPase PF00122.15 gi|385802508|ref|YP_005838908.1| - 3e-53 180.2 3.4 7.1e-53 178.9 2.4 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|385802508|ref|YP_005838908.1| - 1.4e-52 179.2 6.9 3.3e-52 178.0 4.8 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|385802508|ref|YP_005838908.1| - 1.2e-20 73.3 0.1 8.5e-12 45.0 0.0 2.8 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|385802508|ref|YP_005838908.1| - 1.5e-17 64.4 0.9 4.4e-17 62.8 0.6 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|385802508|ref|YP_005838908.1| - 1.1e-05 25.1 1.2 0.0033 17.0 0.3 2.6 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|385802508|ref|YP_005838908.1| - 0.003 17.4 0.0 0.025 14.4 0.0 2.5 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase zf-LITAF-like PF10601.4 gi|385802508|ref|YP_005838908.1| - 0.38 10.6 1.0 11 6.0 0.0 2.7 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Pyr_redox_2 PF07992.9 gi|385802509|ref|YP_005838909.1| - 3.7e-32 111.8 0.0 9.7e-32 110.4 0.0 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|385802509|ref|YP_005838909.1| - 3.4e-21 75.4 2.0 3.1e-16 59.5 0.0 3.7 4 0 0 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|385802509|ref|YP_005838909.1| - 9.2e-10 38.5 0.0 5.3e-09 36.0 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HI0933_like PF03486.9 gi|385802509|ref|YP_005838909.1| - 2.2e-07 29.7 0.0 0.37 9.1 0.0 4.0 3 1 1 4 4 4 3 HI0933-like protein FAD_binding_2 PF00890.19 gi|385802509|ref|YP_005838909.1| - 6.9e-06 25.1 0.7 1.3 7.7 0.1 4.0 3 1 1 4 4 4 2 FAD binding domain NAD_binding_8 PF13450.1 gi|385802509|ref|YP_005838909.1| - 2.2e-05 24.3 0.2 0.0038 17.2 0.0 3.3 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|385802509|ref|YP_005838909.1| - 7.8e-05 22.8 0.0 0.0078 16.2 0.0 3.0 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|385802509|ref|YP_005838909.1| - 0.00066 18.6 6.9 3.4 6.4 0.0 4.1 3 1 1 4 4 4 2 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|385802509|ref|YP_005838909.1| - 0.0064 16.1 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amino_oxidase PF01593.19 gi|385802509|ref|YP_005838909.1| - 0.019 14.0 0.1 1.5 7.7 0.0 2.3 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|385802509|ref|YP_005838909.1| - 0.073 12.4 0.0 0.58 9.5 0.0 2.2 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Beta-Casp PF10996.3 gi|385802510|ref|YP_005838910.1| - 5.9e-20 71.4 0.0 1.9e-19 69.8 0.0 1.8 2 0 0 2 2 2 1 Beta-Casp domain RMMBL PF07521.7 gi|385802510|ref|YP_005838910.1| - 4.4e-13 48.8 0.0 1e-12 47.6 0.0 1.7 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|385802510|ref|YP_005838910.1| - 2.1e-12 46.9 0.4 5.7e-12 45.5 0.4 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|385802510|ref|YP_005838910.1| - 6.6e-12 45.4 1.8 9.7e-12 44.9 1.2 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|385802510|ref|YP_005838910.1| - 0.0065 16.1 0.4 0.05 13.3 0.1 2.2 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Rhodanese PF00581.15 gi|385802510|ref|YP_005838910.1| - 0.03 14.6 0.1 0.25 11.7 0.0 2.3 3 0 0 3 3 3 0 Rhodanese-like domain DUF4307 PF14155.1 gi|385802511|ref|YP_005838911.1| - 0.027 14.2 0.7 0.55 10.0 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) DUF916 PF06030.7 gi|385802511|ref|YP_005838911.1| - 0.028 14.1 1.2 0.06 13.1 0.1 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF916) zinc-ribbons_6 PF07191.7 gi|385802512|ref|YP_005838912.1| - 0.0019 17.9 0.7 0.0022 17.7 0.5 1.1 1 0 0 1 1 1 1 zinc-ribbons OrfB_Zn_ribbon PF07282.6 gi|385802512|ref|YP_005838912.1| - 0.0094 15.5 0.2 0.012 15.2 0.1 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|385802512|ref|YP_005838912.1| - 0.011 15.4 0.3 0.015 15.0 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|385802512|ref|YP_005838912.1| - 0.015 14.7 4.5 0.084 12.3 3.2 1.9 1 1 0 1 1 1 0 zinc-ribbon domain IBR PF01485.16 gi|385802512|ref|YP_005838912.1| - 0.034 14.0 0.5 0.038 13.8 0.4 1.1 1 0 0 1 1 1 0 IBR domain Rubredoxin PF00301.15 gi|385802512|ref|YP_005838912.1| - 0.046 13.5 1.3 0.66 9.9 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin TF_Zn_Ribbon PF08271.7 gi|385802512|ref|YP_005838912.1| - 0.053 12.8 0.9 0.077 12.3 0.6 1.2 1 0 0 1 1 1 0 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|385802512|ref|YP_005838912.1| - 0.062 13.0 2.9 0.14 11.9 1.3 1.8 1 1 1 2 2 2 0 PhnA Zinc-Ribbon Zn_Tnp_IS1 PF03811.8 gi|385802512|ref|YP_005838912.1| - 0.081 12.4 0.6 0.13 11.7 0.4 1.4 1 0 0 1 1 1 0 InsA N-terminal domain Zn_Tnp_IS1595 PF12760.2 gi|385802512|ref|YP_005838912.1| - 0.1 12.4 0.9 0.15 11.8 0.6 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|385802512|ref|YP_005838912.1| - 0.17 11.8 1.6 4.1 7.4 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain NOB1_Zn_bind PF08772.6 gi|385802512|ref|YP_005838912.1| - 0.18 11.6 1.8 0.21 11.4 0.0 1.8 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-ribbon_3 PF13248.1 gi|385802512|ref|YP_005838912.1| - 1.7 7.9 7.0 1.1 8.6 0.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Glyoxalase PF00903.20 gi|385802513|ref|YP_005838913.1| - 2.1e-07 30.9 0.0 2.9e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|385802513|ref|YP_005838913.1| - 1.1e-06 28.5 0.0 2.1e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|385802513|ref|YP_005838913.1| - 1.6e-06 28.6 0.2 3.4e-06 27.6 0.0 1.6 2 0 0 2 2 2 1 Glyoxalase-like domain ADH_zinc_N PF00107.21 gi|385802514|ref|YP_005838914.1| - 2.2e-26 91.9 1.0 4e-26 91.0 0.7 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|385802514|ref|YP_005838914.1| - 1.5e-24 85.8 1.8 1.5e-24 85.8 1.2 2.0 2 1 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_N_assoc PF13823.1 gi|385802514|ref|YP_005838914.1| - 3.1e-06 26.7 0.1 1.1e-05 25.0 0.1 2.0 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated ADH_zinc_N_2 PF13602.1 gi|385802514|ref|YP_005838914.1| - 0.002 18.9 0.3 0.0046 17.8 0.1 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase AA_permease_2 PF13520.1 gi|385802515|ref|YP_005838915.1| - 9.4e-52 175.9 45.9 1.1e-51 175.6 31.8 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|385802515|ref|YP_005838915.1| - 1.1e-46 159.1 43.0 1.4e-46 158.8 29.8 1.0 1 0 0 1 1 1 1 Amino acid permease TrkA_N PF02254.13 gi|385802516|ref|YP_005838916.1| - 1.7e-22 79.5 2.2 2.6e-22 78.9 0.4 1.9 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.16 gi|385802516|ref|YP_005838916.1| - 1.4e-07 31.0 0.1 3e-07 29.9 0.1 1.6 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|385802516|ref|YP_005838916.1| - 3.1e-06 27.3 0.1 5.4e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|385802516|ref|YP_005838916.1| - 2.4e-05 24.4 0.7 4.3e-05 23.5 0.5 1.4 1 0 0 1 1 1 1 NADH(P)-binding XdhC_C PF13478.1 gi|385802516|ref|YP_005838916.1| - 0.00099 19.4 0.1 0.0028 17.9 0.0 1.7 1 1 1 2 2 2 1 XdhC Rossmann domain DAO PF01266.19 gi|385802516|ref|YP_005838916.1| - 0.0016 17.4 0.1 0.002 17.1 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase F420_oxidored PF03807.12 gi|385802516|ref|YP_005838916.1| - 0.0022 18.3 0.0 0.0053 17.1 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|385802516|ref|YP_005838916.1| - 0.0043 16.0 0.1 0.0053 15.7 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase Shikimate_DH PF01488.15 gi|385802516|ref|YP_005838916.1| - 0.0045 17.0 0.1 0.0056 16.7 0.1 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NmrA PF05368.8 gi|385802516|ref|YP_005838916.1| - 0.0068 15.6 0.1 0.0099 15.1 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family GFO_IDH_MocA PF01408.17 gi|385802516|ref|YP_005838916.1| - 0.0096 16.4 0.0 0.019 15.4 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CPSase_L_chain PF00289.17 gi|385802516|ref|YP_005838916.1| - 0.013 15.6 0.4 0.036 14.1 0.1 1.8 1 1 1 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain FAD_binding_3 PF01494.14 gi|385802516|ref|YP_005838916.1| - 0.014 14.5 0.0 0.023 13.7 0.0 1.4 1 0 0 1 1 1 0 FAD binding domain Pyr_redox PF00070.22 gi|385802516|ref|YP_005838916.1| - 0.019 15.3 0.1 0.04 14.3 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Epimerase PF01370.16 gi|385802516|ref|YP_005838916.1| - 0.022 14.1 0.5 0.039 13.4 0.1 1.5 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.13 gi|385802516|ref|YP_005838916.1| - 0.022 14.4 0.2 0.047 13.3 0.1 1.6 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|385802516|ref|YP_005838916.1| - 0.034 13.3 0.0 0.049 12.7 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|385802516|ref|YP_005838916.1| - 0.034 13.5 0.0 0.055 12.8 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF1623 PF07785.6 gi|385802516|ref|YP_005838916.1| - 0.042 13.7 0.0 0.075 12.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1623) ACT PF01842.20 gi|385802516|ref|YP_005838916.1| - 0.2 11.1 1.2 0.88 9.1 0.1 2.4 2 0 0 2 2 2 0 ACT domain MFS_1 PF07690.11 gi|385802517|ref|YP_005838917.1| - 2.8e-48 164.4 82.4 1.2e-40 139.3 35.4 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily NADH_4Fe-4S PF10589.4 gi|385802518|ref|YP_005838918.1| - 1.7e-13 49.4 1.0 3.2e-13 48.5 0.2 1.9 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Complex1_51K PF01512.12 gi|385802518|ref|YP_005838918.1| - 5.1e-10 39.2 0.0 8.1e-10 38.6 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit AcetDehyd-dimer PF09290.6 gi|385802518|ref|YP_005838918.1| - 0.014 15.3 0.3 0.03 14.2 0.2 1.5 1 0 0 1 1 1 0 Prokaryotic acetaldehyde dehydrogenase, dimerisation Fer2_4 PF13510.1 gi|385802519|ref|YP_005838919.1| - 1.6e-22 79.0 0.9 4.8e-22 77.5 0.6 1.8 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.4 gi|385802519|ref|YP_005838919.1| - 3e-14 51.9 0.5 3e-14 51.9 0.4 2.5 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4_7 PF12838.2 gi|385802519|ref|YP_005838919.1| - 5.3e-09 36.3 9.6 5.3e-09 36.3 6.6 2.9 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|385802519|ref|YP_005838919.1| - 7.4e-09 35.3 8.6 7.4e-09 35.3 5.9 2.5 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|385802519|ref|YP_005838919.1| - 3.1e-08 33.1 12.0 1.2e-05 24.9 2.4 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|385802519|ref|YP_005838919.1| - 5.3e-08 32.5 23.1 1.2e-06 28.2 9.3 3.6 2 2 2 4 4 4 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|385802519|ref|YP_005838919.1| - 4.2e-07 29.2 25.1 0.00016 21.1 1.3 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|385802519|ref|YP_005838919.1| - 5.1e-07 29.6 18.6 1.1e-06 28.6 6.1 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|385802519|ref|YP_005838919.1| - 2.6e-06 27.9 8.0 0.0027 18.2 0.4 3.5 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|385802519|ref|YP_005838919.1| - 4.5e-06 26.2 26.3 0.00012 21.8 1.6 4.2 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|385802519|ref|YP_005838919.1| - 2.9e-05 24.2 22.1 4.3e-05 23.6 9.2 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|385802519|ref|YP_005838919.1| - 0.00011 22.4 13.8 0.025 14.9 0.0 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|385802519|ref|YP_005838919.1| - 0.0021 18.7 2.4 0.0021 18.7 1.7 3.7 3 2 2 5 5 3 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|385802519|ref|YP_005838919.1| - 0.0065 16.8 0.8 0.0065 16.8 0.5 3.5 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|385802519|ref|YP_005838919.1| - 0.061 13.6 1.5 0.061 13.6 1.0 4.0 4 0 0 4 4 4 0 4Fe-4S binding domain RunxI PF08504.6 gi|385802519|ref|YP_005838919.1| - 0.23 11.9 2.9 0.61 10.5 2.0 1.6 1 0 0 1 1 1 0 Runx inhibition domain Fer4_13 PF13370.1 gi|385802519|ref|YP_005838919.1| - 1.8 9.0 23.3 0.19 12.1 2.1 3.8 4 0 0 4 4 4 0 4Fe-4S single cluster domain DiS_P_DiS PF06750.8 gi|385802519|ref|YP_005838919.1| - 6.2 6.7 7.1 7 6.5 0.0 2.7 2 2 0 2 2 2 0 Bacterial Peptidase A24 N-terminal domain Molybdopterin PF00384.17 gi|385802520|ref|YP_005838920.1| - 4.7e-78 262.8 0.0 5.7e-78 262.5 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|385802520|ref|YP_005838920.1| - 8.8e-32 109.2 0.1 2.3e-31 107.8 0.0 1.8 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|385802520|ref|YP_005838920.1| - 3.9e-12 45.7 0.0 7.6e-12 44.8 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain DUF1641 PF07849.6 gi|385802521|ref|YP_005838921.1| - 0.00099 18.6 0.1 0.0071 15.9 0.0 2.4 2 1 0 2 2 2 1 Protein of unknown function (DUF1641) ABC_transp_aux PF09822.4 gi|385802521|ref|YP_005838921.1| - 0.034 13.6 1.0 0.041 13.3 0.7 1.2 1 0 0 1 1 1 0 ABC-type uncharacterized transport system GrpE PF01025.14 gi|385802521|ref|YP_005838921.1| - 0.045 13.3 2.5 0.058 12.9 1.5 1.4 1 1 0 1 1 1 0 GrpE DED PF01335.16 gi|385802521|ref|YP_005838921.1| - 0.046 13.8 3.6 0.15 12.1 1.8 2.4 1 1 1 2 2 2 0 Death effector domain PMC2NT PF08066.7 gi|385802521|ref|YP_005838921.1| - 0.12 12.6 1.1 0.59 10.4 0.2 2.4 3 0 0 3 3 3 0 PMC2NT (NUC016) domain CofC PF01983.11 gi|385802521|ref|YP_005838921.1| - 0.26 10.2 3.6 0.22 10.4 0.9 1.9 2 0 0 2 2 2 0 Guanylyl transferase CofC like DUF4350 PF14258.1 gi|385802521|ref|YP_005838921.1| - 0.72 10.1 4.5 15 5.8 0.3 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4350) DUF3383 PF11863.3 gi|385802521|ref|YP_005838921.1| - 1 7.9 9.9 1.3 7.5 6.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3383) Molybdopterin PF00384.17 gi|385802522|ref|YP_005838922.1| - 2.2e-58 198.0 0.0 6.1e-58 196.5 0.0 1.6 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|385802522|ref|YP_005838922.1| - 3.4e-10 39.6 0.3 8.4e-10 38.4 0.2 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|385802522|ref|YP_005838922.1| - 6.1e-07 29.1 0.4 1.3e-06 28.0 0.3 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain GreA_GreB PF01272.14 gi|385802522|ref|YP_005838922.1| - 0.07 12.8 0.2 0.34 10.6 0.3 1.9 2 0 0 2 2 2 0 Transcription elongation factor, GreA/GreB, C-term zf-RING_3 PF14369.1 gi|532164361|ref|YP_005838923.3| - 0.014 15.3 1.3 2.1 8.4 0.1 2.4 2 0 0 2 2 2 0 zinc-finger zf-ribbon_3 PF13248.1 gi|532164361|ref|YP_005838923.3| - 0.019 14.1 6.8 0.038 13.2 4.7 1.6 1 1 0 1 1 1 0 zinc-ribbon domain RNHCP PF12647.2 gi|532164361|ref|YP_005838923.3| - 0.022 14.6 1.6 0.021 14.6 1.1 1.3 1 1 0 1 1 1 0 RNHCP domain zf-C3HC4_3 PF13920.1 gi|532164361|ref|YP_005838923.3| - 0.046 13.3 0.6 0.066 12.8 0.4 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DZR PF12773.2 gi|532164361|ref|YP_005838923.3| - 0.071 12.9 2.4 0.8 9.5 2.0 2.0 1 1 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|532164361|ref|YP_005838923.3| - 0.09 12.4 0.6 0.11 12.1 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family C1_1 PF00130.17 gi|532164361|ref|YP_005838923.3| - 0.11 12.1 1.0 0.15 11.8 0.7 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C3HC4_2 PF13923.1 gi|532164361|ref|YP_005838923.3| - 0.14 12.2 1.9 0.38 10.8 1.0 1.8 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DUF1272 PF06906.6 gi|532164361|ref|YP_005838923.3| - 0.16 11.8 1.8 4.2 7.3 1.3 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-dskA_traR PF01258.12 gi|532164361|ref|YP_005838923.3| - 0.31 10.8 3.5 8.6 6.2 0.3 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger FYDLN_acid PF09538.5 gi|532164361|ref|YP_005838923.3| - 0.36 11.4 3.3 1.7 9.2 2.3 1.9 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zinc_ribbon_5 PF13719.1 gi|532164361|ref|YP_005838923.3| - 1.1 8.9 3.5 4 7.0 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|532164361|ref|YP_005838923.3| - 1.2 8.8 4.2 2.6 7.7 0.2 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.1 gi|532164361|ref|YP_005838923.3| - 1.3 8.6 7.2 5.9 6.5 5.0 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|532164361|ref|YP_005838923.3| - 1.4 8.7 3.4 4.9 6.9 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF2321 PF10083.4 gi|385802524|ref|YP_005838924.1| - 0.0047 16.4 0.1 0.025 14.0 0.0 1.9 1 1 1 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2321) Epimerase PF01370.16 gi|385802525|ref|YP_005838925.1| - 7.3e-19 68.1 0.0 1.2e-18 67.4 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|385802525|ref|YP_005838925.1| - 7.5e-17 60.9 0.0 9.7e-17 60.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|385802525|ref|YP_005838925.1| - 4.3e-12 45.5 0.2 6.1e-09 35.1 0.1 2.7 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|385802525|ref|YP_005838925.1| - 2.6e-11 42.9 0.0 2.3e-10 39.8 0.0 1.9 2 0 0 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.1 gi|385802525|ref|YP_005838925.1| - 3.7e-11 43.3 0.0 6.4e-11 42.5 0.0 1.5 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|385802525|ref|YP_005838925.1| - 1.9e-06 27.9 0.7 6.6e-06 26.1 0.5 1.8 1 1 0 1 1 1 1 short chain dehydrogenase RmlD_sub_bind PF04321.12 gi|385802525|ref|YP_005838925.1| - 0.00099 18.0 0.0 0.0029 16.5 0.0 1.7 1 1 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.8 gi|385802525|ref|YP_005838925.1| - 0.0025 17.1 0.0 0.0054 16.0 0.0 1.5 2 0 0 2 2 2 1 NmrA-like family KR PF08659.5 gi|385802525|ref|YP_005838925.1| - 0.012 15.2 0.3 0.095 12.3 0.2 2.2 1 1 0 1 1 1 0 KR domain Saccharop_dh PF03435.13 gi|385802525|ref|YP_005838925.1| - 0.081 11.8 0.0 0.098 11.6 0.0 1.1 1 0 0 1 1 1 0 Saccharopine dehydrogenase DUF372 PF04036.7 gi|385802526|ref|YP_005838926.1| - 5.1e-22 77.0 0.9 6.4e-22 76.7 0.2 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF372) DUF381 PF04038.7 gi|385802526|ref|YP_005838926.1| - 1.1e-21 76.6 0.2 1.4e-21 76.2 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) GPW_gp25 PF04965.9 gi|385802526|ref|YP_005838926.1| - 0.0042 16.5 0.0 0.0055 16.2 0.0 1.3 1 1 0 1 1 1 1 Gene 25-like lysozyme Adeno_PIX PF03955.9 gi|385802526|ref|YP_005838926.1| - 0.12 12.8 0.1 0.17 12.4 0.1 1.3 1 0 0 1 1 1 0 Adenovirus hexon-associated protein (IX) DUF883 PF05957.8 gi|385802527|ref|YP_005838927.1| - 0.044 14.1 4.0 0.28 11.6 0.1 2.6 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) Apolipoprotein PF01442.13 gi|385802527|ref|YP_005838927.1| - 0.045 13.2 5.3 0.17 11.4 3.7 1.8 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain ZapA PF05164.8 gi|385802527|ref|YP_005838927.1| - 0.37 10.7 1.8 1.7 8.6 1.2 1.9 1 1 0 1 1 1 0 Cell division protein ZapA DUF4398 PF14346.1 gi|385802527|ref|YP_005838927.1| - 1.1 9.4 5.1 6.3 6.9 3.2 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4398) ABC_tran PF00005.22 gi|385802528|ref|YP_005838928.1| - 2.2e-37 128.4 0.0 4.1e-37 127.5 0.0 1.5 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|385802528|ref|YP_005838928.1| - 3e-34 118.6 6.0 4.3e-34 118.1 4.1 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.1 gi|385802528|ref|YP_005838928.1| - 2.7e-06 27.5 0.0 6.8e-05 22.9 0.0 2.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|385802528|ref|YP_005838928.1| - 9.1e-05 22.6 0.1 0.00057 20.0 0.1 2.2 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|385802528|ref|YP_005838928.1| - 0.00018 20.6 0.0 0.00032 19.8 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin DUF258 PF03193.11 gi|385802528|ref|YP_005838928.1| - 0.00036 19.7 0.0 0.00064 18.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|385802528|ref|YP_005838928.1| - 0.00041 21.1 0.0 0.0009 20.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|385802528|ref|YP_005838928.1| - 0.0026 17.7 0.0 0.0066 16.4 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|385802528|ref|YP_005838928.1| - 0.003 17.0 0.1 0.0087 15.5 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|385802528|ref|YP_005838928.1| - 0.0044 17.3 0.1 0.017 15.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|385802528|ref|YP_005838928.1| - 0.0099 15.1 0.4 0.42 9.8 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|385802528|ref|YP_005838928.1| - 0.028 14.6 0.0 0.18 12.0 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|385802528|ref|YP_005838928.1| - 0.031 14.1 0.0 0.11 12.3 0.0 2.0 2 0 0 2 2 1 0 AAA domain AAA_30 PF13604.1 gi|385802528|ref|YP_005838928.1| - 0.048 13.2 0.2 0.25 10.9 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|385802528|ref|YP_005838928.1| - 0.063 12.6 0.1 0.14 11.6 0.1 1.7 1 1 0 1 1 1 0 AAA-like domain AAA_5 PF07728.9 gi|385802528|ref|YP_005838928.1| - 0.071 12.8 0.1 0.56 9.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF903 PF06004.7 gi|385802528|ref|YP_005838928.1| - 0.074 12.5 0.1 0.27 10.7 0.1 2.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF903) Guanylate_kin PF00625.16 gi|385802528|ref|YP_005838928.1| - 0.13 11.6 0.1 0.41 10.0 0.1 1.8 1 1 0 1 1 1 0 Guanylate kinase AAA_23 PF13476.1 gi|385802528|ref|YP_005838928.1| - 0.15 12.3 0.2 0.36 11.1 0.1 1.5 1 0 0 1 1 1 0 AAA domain DUF192 PF02643.10 gi|385802530|ref|YP_005838930.1| - 9.4e-30 102.4 0.0 1.2e-29 102.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 GvpG PF05120.7 gi|385802532|ref|YP_005838932.1| - 0.00014 21.5 0.1 0.00027 20.6 0.0 1.5 1 0 0 1 1 1 1 Gas vesicle protein G SHOCT PF09851.4 gi|385802532|ref|YP_005838932.1| - 0.001 18.4 0.5 0.0017 17.7 0.0 1.6 2 0 0 2 2 2 1 Short C-terminal domain ABC2_membrane_2 PF12679.2 gi|385802533|ref|YP_005838933.1| - 2.2e-20 72.6 21.7 3.4e-20 72.0 15.0 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|385802533|ref|YP_005838933.1| - 1.2e-06 27.9 29.4 1.8e-06 27.2 20.4 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|385802534|ref|YP_005838934.1| - 7.4e-28 97.1 15.9 1.3e-27 96.3 11.0 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|385802534|ref|YP_005838934.1| - 9.8e-12 44.5 19.7 1.2e-11 44.2 13.4 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|385802534|ref|YP_005838934.1| - 1.2e-05 24.5 19.0 1.2e-05 24.5 13.2 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|385802534|ref|YP_005838934.1| - 0.0016 17.7 12.6 0.0039 16.5 8.6 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|385802534|ref|YP_005838934.1| - 0.32 10.1 21.4 0.012 14.8 10.0 1.8 2 0 0 2 2 2 0 ABC-2 type transporter Vma12 PF11712.3 gi|385802534|ref|YP_005838934.1| - 6.1 6.5 8.9 3 7.5 4.4 1.8 2 0 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase ABC_tran PF00005.22 gi|385802535|ref|YP_005838935.1| - 4.5e-29 101.5 0.0 1.3e-28 100.0 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|385802535|ref|YP_005838935.1| - 1.3e-13 51.5 0.0 2e-07 31.2 0.0 2.3 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|385802535|ref|YP_005838935.1| - 2.6e-05 24.6 0.0 5.8e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_10 PF12846.2 gi|385802535|ref|YP_005838935.1| - 3.5e-05 23.3 0.0 0.00051 19.5 0.0 2.0 1 1 1 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|385802535|ref|YP_005838935.1| - 0.0032 16.6 0.0 0.0073 15.5 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|385802535|ref|YP_005838935.1| - 0.0065 15.7 0.0 3.5 6.7 0.0 2.4 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|385802535|ref|YP_005838935.1| - 0.0088 16.3 1.4 0.012 15.9 0.1 1.7 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|385802535|ref|YP_005838935.1| - 0.013 15.0 0.1 0.03 13.8 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Lum_binding PF00677.12 gi|385802535|ref|YP_005838935.1| - 0.24 11.3 2.8 6.5 6.7 0.0 2.8 3 0 0 3 3 3 0 Lumazine binding domain NAD_binding_10 PF13460.1 gi|385802536|ref|YP_005838936.1| - 2e-25 89.8 3.1 2.6e-25 89.5 2.1 1.1 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|385802536|ref|YP_005838936.1| - 2e-08 33.7 0.1 1e-07 31.4 0.0 2.0 1 1 0 1 1 1 1 NmrA-like family 3Beta_HSD PF01073.14 gi|385802536|ref|YP_005838936.1| - 0.00012 20.8 0.0 0.00016 20.4 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.16 gi|385802536|ref|YP_005838936.1| - 0.00057 19.3 0.1 0.0016 17.9 0.1 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family ADH_zinc_N PF00107.21 gi|385802536|ref|YP_005838936.1| - 0.0028 17.1 0.2 0.0051 16.3 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase TrkA_N PF02254.13 gi|385802536|ref|YP_005838936.1| - 0.075 13.0 0.2 0.21 11.5 0.1 1.8 1 0 0 1 1 1 0 TrkA-N domain Ion_trans_2 PF07885.11 gi|385802537|ref|YP_005838937.1| - 3.9e-15 55.3 7.0 3.9e-15 55.3 4.8 2.4 2 1 1 3 3 3 1 Ion channel Ion_trans PF00520.26 gi|385802537|ref|YP_005838937.1| - 6.5e-10 38.5 11.0 1.5e-09 37.3 6.1 2.4 2 1 0 2 2 2 1 Ion transport protein UPF0547 PF10571.4 gi|385802537|ref|YP_005838937.1| - 0.00016 21.3 2.8 0.00031 20.3 2.0 1.5 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|385802537|ref|YP_005838937.1| - 0.00018 20.6 0.5 0.00027 20.0 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DUF979 PF06166.7 gi|385802537|ref|YP_005838937.1| - 0.0023 16.9 0.5 0.027 13.4 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF979) DZR PF12773.2 gi|385802537|ref|YP_005838937.1| - 0.0029 17.3 0.3 0.0048 16.6 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|385802537|ref|YP_005838937.1| - 0.0034 16.8 1.0 0.0055 16.1 0.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DnaJ_CXXCXGXG PF00684.14 gi|385802537|ref|YP_005838937.1| - 0.088 12.8 0.3 0.13 12.3 0.2 1.2 1 0 0 1 1 1 0 DnaJ central domain DUF4352 PF11611.3 gi|385802538|ref|YP_005838938.1| - 0.12 12.4 0.0 0.2 11.8 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4352) DUF2688 PF10892.3 gi|385802539|ref|YP_005838939.1| - 0.027 14.1 0.0 0.061 12.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2688) Marek_SORF3 PF07153.6 gi|385802539|ref|YP_005838939.1| - 0.11 11.1 0.0 0.15 10.6 0.0 1.2 1 0 0 1 1 1 0 Marek's disease-like virus SORF3 protein zf-TFIIB PF13453.1 gi|385802539|ref|YP_005838939.1| - 0.12 11.5 2.1 3.3 6.9 0.2 2.4 2 0 0 2 2 2 0 Transcription factor zinc-finger APCDDC PF14921.1 gi|385802540|ref|YP_005838940.1| - 0.12 11.7 0.0 0.12 11.6 0.0 1.1 1 0 0 1 1 1 0 Adenomatosis polyposis coli down-regulated 1 HhH-GPD PF00730.20 gi|385802541|ref|YP_005838941.1| - 3.5e-16 59.4 0.0 4.9e-16 58.9 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|385802541|ref|YP_005838941.1| - 2e-05 24.0 0.0 5.6e-05 22.6 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|385802541|ref|YP_005838941.1| - 0.00026 21.1 0.2 0.0012 18.9 0.1 2.0 1 1 1 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|385802541|ref|YP_005838941.1| - 0.00045 20.0 0.2 0.73 9.7 0.0 3.1 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_8 PF14716.1 gi|385802541|ref|YP_005838941.1| - 0.024 14.8 0.2 0.11 12.6 0.1 2.0 1 1 0 1 1 1 0 Helix-hairpin-helix domain DUF3701 PF12482.3 gi|385802541|ref|YP_005838941.1| - 0.042 13.5 0.1 0.28 10.9 0.0 2.1 1 1 0 1 1 1 0 Phage integrase protein Peripla_BP_2 PF01497.13 gi|385802542|ref|YP_005838942.1| - 5.4e-17 61.7 0.0 1.2e-16 60.5 0.0 1.5 1 1 0 1 1 1 1 Periplasmic binding protein Raptor_N PF14538.1 gi|385802542|ref|YP_005838942.1| - 0.12 12.2 0.1 0.39 10.5 0.0 1.7 2 0 0 2 2 2 0 Raptor N-terminal CASPase like domain TFIIB PF00382.14 gi|385802543|ref|YP_005838943.1| - 7.8e-40 134.5 0.3 1.2e-20 73.1 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|385802543|ref|YP_005838943.1| - 1.5e-14 53.0 4.5 1.6e-14 52.9 2.0 1.9 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|385802543|ref|YP_005838943.1| - 0.0014 17.9 1.1 0.83 9.0 0.0 3.9 4 0 0 4 4 4 1 Sigma-70, region 4 TrmB PF01978.14 gi|385802543|ref|YP_005838943.1| - 0.037 13.7 1.5 5.5 6.7 0.1 2.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.1 gi|385802543|ref|YP_005838943.1| - 0.073 12.6 2.3 0.69 9.5 0.0 3.5 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain DZR PF12773.2 gi|385802543|ref|YP_005838943.1| - 0.37 10.6 1.9 0.94 9.3 1.4 1.6 1 1 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|385802543|ref|YP_005838943.1| - 1.8 8.3 5.3 0.4 10.3 1.0 1.9 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DHquinase_I PF01487.10 gi|385802544|ref|YP_005838944.1| - 3.1e-49 167.6 0.0 3.6e-49 167.4 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase DDE_Tnp_1 PF01609.16 gi|385802545|ref|YP_005838945.1| - 1.5e-08 34.4 0.1 2.3e-08 33.8 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain DHQS PF01959.11 gi|385802546|ref|YP_005838946.1| - 3.3e-147 489.8 6.9 3.7e-147 489.6 4.8 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) Hint_2 PF13403.1 gi|385802546|ref|YP_005838946.1| - 0.012 15.6 0.2 1.4 8.8 0.0 2.7 2 0 0 2 2 2 0 Hint domain QRPTase_C PF01729.14 gi|385802546|ref|YP_005838946.1| - 0.024 14.1 1.7 0.057 12.9 0.2 2.3 2 1 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain UPF0086 PF01868.11 gi|385802546|ref|YP_005838946.1| - 0.035 13.7 0.1 0.1 12.2 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function UPF0086 Response_reg PF00072.19 gi|385802546|ref|YP_005838946.1| - 0.05 13.6 0.2 0.25 11.3 0.0 2.2 2 1 0 2 2 2 0 Response regulator receiver domain Hint PF01079.15 gi|385802546|ref|YP_005838946.1| - 0.08 12.1 0.0 0.69 9.0 0.0 2.2 2 0 0 2 2 2 0 Hint module DeoC PF01791.4 gi|385802547|ref|YP_005838947.1| - 7.9e-39 133.3 0.0 9.8e-39 133.0 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.19 gi|385802547|ref|YP_005838947.1| - 0.00014 21.2 0.0 0.00021 20.6 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel PEP_mutase PF13714.1 gi|385802547|ref|YP_005838947.1| - 0.036 13.2 0.3 0.27 10.4 0.2 2.4 1 1 1 2 2 2 0 Phosphoenolpyruvate phosphomutase HgmA PF04209.8 gi|385802547|ref|YP_005838947.1| - 0.045 12.1 0.0 0.072 11.4 0.0 1.2 1 0 0 1 1 1 0 homogentisate 1,2-dioxygenase TMP-TENI PF02581.12 gi|385802547|ref|YP_005838947.1| - 0.048 12.7 1.1 1.1 8.3 0.3 2.6 3 1 0 3 3 3 0 Thiamine monophosphate synthase/TENI DUF561 PF04481.7 gi|385802547|ref|YP_005838947.1| - 0.097 11.5 0.1 0.15 10.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF561) Trp_syntA PF00290.15 gi|385802548|ref|YP_005838948.1| - 1.2e-90 302.5 0.0 1.4e-90 302.3 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|385802548|ref|YP_005838948.1| - 0.00025 20.3 0.6 0.00067 18.9 0.4 1.7 2 0 0 2 2 2 1 PcrB family His_biosynth PF00977.16 gi|385802548|ref|YP_005838948.1| - 0.0027 17.0 0.2 0.0043 16.3 0.1 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein PALP PF00291.20 gi|385802549|ref|YP_005838949.1| - 1.7e-33 116.1 0.1 2.7e-33 115.5 0.1 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IGPS PF00218.16 gi|385802550|ref|YP_005838950.1| - 2.2e-71 239.9 0.1 2.7e-71 239.6 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.13 gi|385802550|ref|YP_005838950.1| - 2.7e-07 29.7 0.7 4.1e-07 29.1 0.5 1.4 1 1 0 1 1 1 1 FMN-dependent dehydrogenase NanE PF04131.9 gi|385802550|ref|YP_005838950.1| - 3.3e-06 26.2 0.8 4.9e-05 22.3 0.5 2.4 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase QRPTase_C PF01729.14 gi|385802550|ref|YP_005838950.1| - 6.9e-06 25.6 0.4 4.2e-05 23.1 0.0 2.1 2 1 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain His_biosynth PF00977.16 gi|385802550|ref|YP_005838950.1| - 0.00022 20.5 0.0 0.0013 18.0 0.0 2.1 2 0 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.12 gi|385802550|ref|YP_005838950.1| - 0.00036 19.8 0.1 0.00094 18.4 0.0 1.6 2 0 0 2 2 2 1 PcrB family DeoC PF01791.4 gi|385802550|ref|YP_005838950.1| - 0.0013 18.0 0.5 0.41 9.9 0.0 2.5 2 1 0 2 2 2 2 DeoC/LacD family aldolase DHO_dh PF01180.16 gi|385802550|ref|YP_005838950.1| - 0.0038 16.2 0.0 0.0075 15.2 0.0 1.5 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|385802550|ref|YP_005838950.1| - 0.014 14.2 0.2 0.041 12.7 0.1 1.8 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|385802550|ref|YP_005838950.1| - 0.043 12.8 0.1 0.13 11.3 0.0 1.9 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG Trp_syntA PF00290.15 gi|385802550|ref|YP_005838950.1| - 0.084 11.3 0.1 0.17 10.3 0.0 1.6 2 0 0 2 2 2 0 Tryptophan synthase alpha chain DNA_binding_1 PF01035.15 gi|385802551|ref|YP_005838951.1| - 2.4e-11 43.2 0.0 4.1e-11 42.4 0.0 1.4 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Nuc_rec_co-act PF08815.5 gi|385802551|ref|YP_005838951.1| - 0.1 12.1 1.4 0.15 11.5 0.2 1.9 2 0 0 2 2 2 0 Nuclear receptor coactivator Polyketide_cyc2 PF10604.4 gi|385802552|ref|YP_005838952.1| - 2.4e-21 76.3 0.1 2.7e-21 76.2 0.1 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|385802552|ref|YP_005838952.1| - 2.7e-07 30.6 0.0 4.3e-07 29.9 0.0 1.3 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|385802552|ref|YP_005838952.1| - 0.0068 16.5 0.1 0.0074 16.3 0.0 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein COXG PF06240.8 gi|385802552|ref|YP_005838952.1| - 0.071 12.7 0.1 0.42 10.2 0.0 2.4 1 1 0 1 1 1 0 Carbon monoxide dehydrogenase subunit G (CoxG) Abi PF02517.11 gi|385802553|ref|YP_005838953.1| - 6.4e-13 48.6 16.1 6.2e-12 45.5 7.9 2.5 2 1 0 2 2 2 2 CAAX protease self-immunity SART-1 PF03343.8 gi|385802553|ref|YP_005838953.1| - 0.016 13.5 1.5 0.02 13.2 1.0 1.0 1 0 0 1 1 1 0 SART-1 family CPSF100_C PF13299.1 gi|385802553|ref|YP_005838953.1| - 0.89 9.7 2.8 1.3 9.1 1.9 1.1 1 0 0 1 1 1 0 Cleavage and polyadenylation factor 2 C-terminal Lon_C PF05362.8 gi|385802554|ref|YP_005838954.1| - 2.6e-32 111.7 2.7 4.1e-32 111.1 1.9 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|385802554|ref|YP_005838954.1| - 1.8e-27 96.2 0.0 3.7e-19 68.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|385802554|ref|YP_005838954.1| - 3.5e-17 62.2 0.1 1e-10 41.1 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|385802554|ref|YP_005838954.1| - 4.5e-14 52.2 0.0 6.9e-08 32.1 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain MCM PF00493.18 gi|385802554|ref|YP_005838954.1| - 3.9e-11 42.3 0.4 0.027 13.2 0.0 3.2 3 0 0 3 3 3 3 MCM2/3/5 family AAA_5 PF07728.9 gi|385802554|ref|YP_005838954.1| - 1.9e-10 40.5 0.0 0.00061 19.5 0.0 2.8 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) ChlI PF13541.1 gi|385802554|ref|YP_005838954.1| - 6.4e-09 35.3 0.4 1.6e-08 34.0 0.3 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA PF00004.24 gi|385802554|ref|YP_005838954.1| - 1.9e-06 28.0 0.0 0.065 13.4 0.0 2.8 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|385802554|ref|YP_005838954.1| - 2.4e-05 24.3 0.0 0.16 12.0 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.7 gi|385802554|ref|YP_005838954.1| - 2.6e-05 23.4 0.1 0.0027 16.8 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus TIP49 PF06068.8 gi|385802554|ref|YP_005838954.1| - 4e-05 22.5 0.0 0.068 11.8 0.0 2.4 2 0 0 2 2 2 2 TIP49 C-terminus AAA_22 PF13401.1 gi|385802554|ref|YP_005838954.1| - 0.00018 21.6 0.0 0.0087 16.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_PrkA PF08298.6 gi|385802554|ref|YP_005838954.1| - 0.001 17.8 0.0 0.071 11.7 0.0 2.2 2 0 0 2 2 2 1 PrkA AAA domain AAA_3 PF07726.6 gi|385802554|ref|YP_005838954.1| - 0.0012 18.4 0.1 1.2 8.7 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|385802554|ref|YP_005838954.1| - 0.0016 18.7 0.0 0.0062 16.8 0.0 2.1 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|385802554|ref|YP_005838954.1| - 0.0051 16.5 0.0 0.015 15.0 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|385802554|ref|YP_005838954.1| - 0.0059 16.2 0.0 0.022 14.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|385802554|ref|YP_005838954.1| - 0.006 15.5 0.3 0.099 11.5 0.0 2.7 3 0 0 3 3 3 1 Type II/IV secretion system protein PhoH PF02562.11 gi|385802554|ref|YP_005838954.1| - 0.0065 15.7 0.0 0.012 14.7 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein AAA_2 PF07724.9 gi|385802554|ref|YP_005838954.1| - 0.0077 16.1 0.1 1.5 8.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_33 PF13671.1 gi|385802554|ref|YP_005838954.1| - 0.012 15.4 0.0 0.045 13.6 0.0 2.0 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|385802554|ref|YP_005838954.1| - 0.017 14.2 0.0 0.037 13.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin TrwB_AAD_bind PF10412.4 gi|385802554|ref|YP_005838954.1| - 0.021 13.4 0.0 0.031 12.9 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF815 PF05673.8 gi|385802554|ref|YP_005838954.1| - 0.023 13.6 0.0 0.043 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NACHT PF05729.7 gi|385802554|ref|YP_005838954.1| - 0.031 13.9 0.0 0.054 13.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.22 gi|385802554|ref|YP_005838954.1| - 0.034 14.4 0.0 0.084 13.1 0.0 1.6 1 0 0 1 1 1 0 ABC transporter IstB_IS21 PF01695.12 gi|385802554|ref|YP_005838954.1| - 0.06 12.7 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_17 PF13207.1 gi|385802554|ref|YP_005838954.1| - 0.084 13.6 1.4 0.59 10.9 0.0 2.7 2 1 1 3 3 2 0 AAA domain Parvo_NS1 PF01057.12 gi|385802554|ref|YP_005838954.1| - 0.11 11.2 0.0 0.19 10.5 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 CTP_transf_2 PF01467.21 gi|385802555|ref|YP_005838955.1| - 2.1e-14 53.8 0.2 4.9e-14 52.6 0.0 1.6 1 1 1 2 2 2 1 Cytidylyltransferase YdfZ PF14001.1 gi|385802555|ref|YP_005838955.1| - 0.12 12.6 0.2 0.82 9.9 0.0 2.4 3 0 0 3 3 3 0 YdfZ protein SAM_adeno_trans PF01887.11 gi|385802556|ref|YP_005838956.1| - 1.7e-80 269.7 0.6 1.9e-80 269.6 0.4 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Cpn60_TCP1 PF00118.19 gi|385802557|ref|YP_005838957.1| - 1.8e-135 452.2 3.2 2.1e-135 452.1 2.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Glycos_transf_2 PF00535.21 gi|385802558|ref|YP_005838958.1| - 7.8e-12 45.2 0.0 1.1e-11 44.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|385802558|ref|YP_005838958.1| - 1.1e-06 28.5 2.3 1.2e-06 28.4 0.2 2.0 2 1 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|385802558|ref|YP_005838958.1| - 0.003 16.6 0.0 0.0052 15.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Methyltransf_11 PF08241.7 gi|385802559|ref|YP_005838959.1| - 2.4e-22 79.2 0.0 7.5e-22 77.6 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385802559|ref|YP_005838959.1| - 1.3e-15 57.2 0.0 1.9e-15 56.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385802559|ref|YP_005838959.1| - 4.2e-15 56.2 0.0 7.7e-15 55.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|385802559|ref|YP_005838959.1| - 6e-15 55.4 0.0 2.3e-14 53.5 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|385802559|ref|YP_005838959.1| - 1.8e-14 53.7 0.0 2.5e-14 53.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|385802559|ref|YP_005838959.1| - 5.5e-14 51.8 0.0 8.8e-14 51.1 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|385802559|ref|YP_005838959.1| - 1.8e-13 50.8 0.0 3.2e-13 49.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|385802559|ref|YP_005838959.1| - 6.2e-13 48.8 0.4 1e-12 48.0 0.2 1.6 2 1 0 2 2 1 1 Methyltransferase domain MTS PF05175.9 gi|385802559|ref|YP_005838959.1| - 5.8e-07 29.0 0.1 1.4e-06 27.7 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain UPF0020 PF01170.13 gi|385802559|ref|YP_005838959.1| - 3.9e-06 26.5 0.0 4.4e-05 23.1 0.0 2.1 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 MetW PF07021.7 gi|385802559|ref|YP_005838959.1| - 7.4e-06 25.4 0.0 1.1e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW RrnaAD PF00398.15 gi|385802559|ref|YP_005838959.1| - 9.9e-06 24.7 0.0 1.2e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|385802559|ref|YP_005838959.1| - 1.3e-05 24.4 0.0 2.3e-05 23.6 0.0 1.3 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.6 gi|385802559|ref|YP_005838959.1| - 2.4e-05 23.1 0.0 3.7e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_4 PF02390.12 gi|385802559|ref|YP_005838959.1| - 0.00034 19.7 0.0 0.00064 18.8 0.0 1.5 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_29 PF03141.11 gi|385802559|ref|YP_005838959.1| - 0.0011 17.4 0.0 0.0014 17.0 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase PCMT PF01135.14 gi|385802559|ref|YP_005838959.1| - 0.0014 18.2 0.0 0.002 17.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_15 PF09445.5 gi|385802559|ref|YP_005838959.1| - 0.0014 18.1 0.0 0.0021 17.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase tRNA_U5-meth_tr PF05958.6 gi|385802559|ref|YP_005838959.1| - 0.0015 17.3 0.0 0.0022 16.7 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase TPMT PF05724.6 gi|385802559|ref|YP_005838959.1| - 0.0025 17.3 0.0 0.004 16.6 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) NodS PF05401.6 gi|385802559|ref|YP_005838959.1| - 0.0062 15.9 0.0 0.0085 15.5 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_20 PF12147.3 gi|385802559|ref|YP_005838959.1| - 0.013 14.3 0.0 0.019 13.8 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase DUF938 PF06080.7 gi|385802559|ref|YP_005838959.1| - 0.018 14.5 0.0 0.28 10.7 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF938) FtsJ PF01728.14 gi|385802559|ref|YP_005838959.1| - 0.029 14.3 0.0 0.076 12.9 0.0 1.6 1 1 1 2 2 2 0 FtsJ-like methyltransferase Methyltransf_32 PF13679.1 gi|385802559|ref|YP_005838959.1| - 0.076 12.7 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain TehB PF03848.9 gi|385802559|ref|YP_005838959.1| - 0.1 11.7 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB ACT PF01842.20 gi|385802559|ref|YP_005838959.1| - 0.12 11.8 0.1 0.35 10.4 0.0 1.8 2 0 0 2 2 2 0 ACT domain HTH_24 PF13412.1 gi|385802560|ref|YP_005838960.1| - 2.9e-06 26.5 0.3 1.6e-05 24.1 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|385802560|ref|YP_005838960.1| - 0.00077 19.0 0.1 0.0012 18.4 0.1 1.4 1 1 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|385802560|ref|YP_005838960.1| - 0.0023 17.4 0.0 0.0036 16.7 0.0 1.3 1 1 0 1 1 1 1 TFIIE alpha subunit MarR PF01047.17 gi|385802560|ref|YP_005838960.1| - 0.0046 16.6 0.0 0.0068 16.0 0.0 1.3 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|385802560|ref|YP_005838960.1| - 0.0054 16.1 0.1 0.0083 15.5 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|385802560|ref|YP_005838960.1| - 0.0063 16.3 0.3 0.024 14.4 0.1 1.8 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_12 PF08461.5 gi|385802560|ref|YP_005838960.1| - 0.0082 15.8 0.5 0.028 14.1 0.1 2.0 2 1 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_27 PF13463.1 gi|385802560|ref|YP_005838960.1| - 0.028 14.7 0.0 0.042 14.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain RNA_pol_Rpc34 PF05158.7 gi|385802560|ref|YP_005838960.1| - 0.028 13.6 0.0 0.031 13.4 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_36 PF13730.1 gi|385802560|ref|YP_005838960.1| - 0.031 14.3 0.0 0.055 13.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|385802560|ref|YP_005838960.1| - 0.083 12.6 0.1 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|385802560|ref|YP_005838960.1| - 0.09 12.9 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Lactamase_B PF00753.22 gi|385802561|ref|YP_005838961.1| - 6.7e-11 42.1 3.4 1.3e-10 41.2 2.4 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|385802561|ref|YP_005838961.1| - 0.00022 20.8 0.1 0.00029 20.4 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain CxxCxxCC PF03692.10 gi|385802562|ref|YP_005838962.1| - 1.8e-12 47.5 2.5 3e-07 30.8 0.0 2.6 2 0 0 2 2 2 2 Putative zinc- or iron-chelating domain HIPIP PF01355.12 gi|385802562|ref|YP_005838962.1| - 0.042 13.9 0.1 0.042 13.9 0.1 1.9 2 0 0 2 2 2 0 High potential iron-sulfur protein Lin-8 PF03353.10 gi|385802562|ref|YP_005838962.1| - 2.9 7.1 8.4 3.8 6.6 5.8 1.2 1 0 0 1 1 1 0 Ras-mediated vulval-induction antagonist TRAM PF01938.15 gi|385802563|ref|YP_005838963.1| - 1.9e-13 49.9 1.4 3.3e-13 49.1 1.0 1.3 1 0 0 1 1 1 1 TRAM domain Hexapep PF00132.19 gi|385802563|ref|YP_005838963.1| - 0.13 11.7 0.1 0.21 11.1 0.1 1.4 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) Radical_SAM PF04055.16 gi|385802564|ref|YP_005838964.1| - 2.4e-14 53.8 0.0 6.6e-14 52.4 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily HHH PF00633.18 gi|385802564|ref|YP_005838964.1| - 2.1e-05 23.9 0.0 7.1e-05 22.2 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|385802564|ref|YP_005838964.1| - 0.00069 19.5 0.0 0.0016 18.3 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|385802564|ref|YP_005838964.1| - 0.0061 16.7 0.0 0.049 13.8 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|385802564|ref|YP_005838964.1| - 0.12 12.2 0.1 0.32 10.8 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif PsbU PF06514.6 gi|385802564|ref|YP_005838964.1| - 0.14 12.0 0.0 0.39 10.5 0.0 1.7 1 0 0 1 1 1 0 Photosystem II 12 kDa extrinsic protein (PsbU) DUF429 PF04250.8 gi|385802565|ref|YP_005838965.1| - 2e-05 23.9 0.1 4.1e-05 22.9 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF429) EamA PF00892.15 gi|385802566|ref|YP_005838966.1| - 2.6e-27 95.3 34.4 5.5e-17 61.9 6.5 2.4 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|385802566|ref|YP_005838966.1| - 2e-05 24.7 11.3 2e-05 24.7 7.8 3.4 3 1 0 3 3 3 2 Multidrug resistance efflux transporter Nuc_sug_transp PF04142.10 gi|385802566|ref|YP_005838966.1| - 0.00014 21.0 1.9 0.14 11.2 0.9 2.4 2 0 0 2 2 2 2 Nucleotide-sugar transporter TPT PF03151.11 gi|385802566|ref|YP_005838966.1| - 0.5 9.9 31.0 4.3 6.9 4.4 3.9 2 2 1 3 3 3 0 Triose-phosphate Transporter family UPF0546 PF10639.4 gi|385802566|ref|YP_005838966.1| - 3.3 7.5 13.2 0.22 11.3 0.9 2.8 2 1 0 2 2 2 0 Uncharacterised protein family UPF0546 zf-Di19 PF05605.7 gi|385802567|ref|YP_005838967.1| - 0.0055 16.8 0.2 0.0093 16.0 0.1 1.5 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding DUF4468 PF14730.1 gi|385802567|ref|YP_005838967.1| - 0.031 13.9 0.0 0.037 13.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4468) with TBP-like fold Cys_rich_CPXG PF14255.1 gi|385802567|ref|YP_005838967.1| - 0.044 13.6 0.2 0.091 12.5 0.2 1.5 1 0 0 1 1 1 0 Cysteine-rich CPXCG zf-ribbon_3 PF13248.1 gi|385802567|ref|YP_005838967.1| - 0.06 12.5 0.7 0.094 11.9 0.1 1.6 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|385802567|ref|YP_005838967.1| - 0.17 12.1 1.2 1.7 8.9 0.1 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar TFIIS_C PF01096.13 gi|385802567|ref|YP_005838967.1| - 0.2 11.3 1.2 2.5 7.8 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-CHCC PF10276.4 gi|385802567|ref|YP_005838967.1| - 0.39 10.6 2.4 0.62 9.9 0.3 2.0 2 0 0 2 2 2 0 Zinc-finger domain HSP20 PF00011.16 gi|385802568|ref|YP_005838968.1| - 1.8e-07 30.9 0.0 3.2e-07 30.1 0.0 1.4 1 1 0 1 1 1 1 Hsp20/alpha crystallin family DDE_Tnp_IS66 PF03050.9 gi|385802569|ref|YP_005838969.1| - 1.1e-53 182.1 0.1 1.1e-53 182.1 0.0 1.9 2 0 0 2 2 2 1 Transposase IS66 family DUF904 PF06005.7 gi|385802569|ref|YP_005838969.1| - 8.2e-10 38.8 6.0 2.7e-09 37.1 4.2 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF904) CASP_C PF08172.7 gi|385802569|ref|YP_005838969.1| - 9.3e-05 21.5 1.3 0.00019 20.5 0.9 1.4 1 0 0 1 1 1 1 CASP C terminal bZIP_1 PF00170.16 gi|385802569|ref|YP_005838969.1| - 0.00025 20.9 7.9 0.00051 19.9 5.5 1.5 1 0 0 1 1 1 1 bZIP transcription factor zf-IS66 PF13005.2 gi|385802569|ref|YP_005838969.1| - 0.00031 20.6 7.3 0.0009 19.1 5.1 1.9 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 DUF972 PF06156.8 gi|385802569|ref|YP_005838969.1| - 0.00061 20.0 5.1 0.0011 19.2 3.1 1.7 2 0 0 2 2 1 1 Protein of unknown function (DUF972) Striatin PF08232.7 gi|385802569|ref|YP_005838969.1| - 0.0019 18.5 3.0 0.004 17.4 2.1 1.5 1 0 0 1 1 1 1 Striatin family IncA PF04156.9 gi|385802569|ref|YP_005838969.1| - 0.0078 15.8 5.6 0.016 14.8 3.9 1.4 1 0 0 1 1 1 1 IncA protein GAS PF13851.1 gi|385802569|ref|YP_005838969.1| - 0.0099 15.0 4.6 0.018 14.2 3.2 1.3 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding DivIC PF04977.10 gi|385802569|ref|YP_005838969.1| - 0.014 14.8 4.3 0.014 14.8 3.0 2.1 2 0 0 2 2 1 0 Septum formation initiator DUF4201 PF13870.1 gi|385802569|ref|YP_005838969.1| - 0.024 14.0 5.1 0.042 13.2 3.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) CENP-H PF05837.7 gi|385802569|ref|YP_005838969.1| - 0.026 14.7 2.8 0.057 13.5 1.9 1.5 1 0 0 1 1 1 0 Centromere protein H (CENP-H) Atg14 PF10186.4 gi|385802569|ref|YP_005838969.1| - 0.033 13.1 3.7 0.066 12.1 2.6 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Transposase_mut PF00872.13 gi|385802569|ref|YP_005838969.1| - 0.035 12.6 0.0 0.07 11.6 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family DUF1875 PF08961.5 gi|385802569|ref|YP_005838969.1| - 0.049 12.9 2.7 0.093 12.0 1.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1875) TMF_DNA_bd PF12329.3 gi|385802569|ref|YP_005838969.1| - 0.049 13.4 9.4 0.12 12.2 6.5 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding eIF-3c_N PF05470.7 gi|385802569|ref|YP_005838969.1| - 0.052 11.6 0.2 0.054 11.5 0.2 1.1 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit 8 N-terminus Fmp27_WPPW PF10359.4 gi|385802569|ref|YP_005838969.1| - 0.053 11.9 2.4 0.07 11.5 1.6 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain ADIP PF11559.3 gi|385802569|ref|YP_005838969.1| - 0.053 13.4 6.8 0.099 12.5 4.7 1.4 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DDE_Tnp_IS240 PF13610.1 gi|385802569|ref|YP_005838969.1| - 0.088 12.7 2.0 0.2 11.6 0.0 2.3 2 1 0 2 2 2 0 DDE domain Synaptobrevin PF00957.16 gi|385802569|ref|YP_005838969.1| - 0.11 12.1 2.5 0.2 11.2 1.7 1.3 1 0 0 1 1 1 0 Synaptobrevin Sipho_Gp157 PF05565.6 gi|385802569|ref|YP_005838969.1| - 0.15 11.6 3.9 0.25 10.9 2.7 1.3 1 0 0 1 1 1 0 Siphovirus Gp157 TSC22 PF01166.13 gi|385802569|ref|YP_005838969.1| - 0.2 11.6 13.9 0.087 12.7 3.7 3.2 2 1 1 3 3 3 0 TSC-22/dip/bun family Herpes_BLRF2 PF05812.7 gi|385802569|ref|YP_005838969.1| - 0.22 11.3 6.6 3 7.6 0.1 2.6 1 1 1 2 2 2 0 Herpesvirus BLRF2 protein bZIP_2 PF07716.10 gi|385802569|ref|YP_005838969.1| - 0.25 11.2 12.5 0.25 11.1 6.0 2.4 1 1 1 2 2 2 0 Basic region leucine zipper V_ATPase_I PF01496.14 gi|385802569|ref|YP_005838969.1| - 0.25 9.1 1.7 0.33 8.7 1.2 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family NYD-SP28_assoc PF14775.1 gi|385802569|ref|YP_005838969.1| - 0.54 9.9 11.2 3 7.6 2.5 2.8 1 1 1 2 2 2 0 Sperm tail C-terminal domain Spc24 PF08286.6 gi|385802569|ref|YP_005838969.1| - 0.56 9.9 4.8 1.1 9.0 3.4 1.5 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 APG6 PF04111.7 gi|385802569|ref|YP_005838969.1| - 1.1 8.1 5.2 2 7.4 3.6 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 SpoVR PF04293.8 gi|385802569|ref|YP_005838969.1| - 1.8 6.8 4.4 2.8 6.1 3.1 1.2 1 0 0 1 1 1 0 SpoVR like protein EMP24_GP25L PF01105.19 gi|385802569|ref|YP_005838969.1| - 2 8.1 4.3 3.8 7.2 3.0 1.4 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD HALZ PF02183.13 gi|385802569|ref|YP_005838969.1| - 3.6 7.3 10.9 0.79 9.4 4.6 2.1 2 0 0 2 2 2 0 Homeobox associated leucine zipper SlyX PF04102.7 gi|385802569|ref|YP_005838969.1| - 4.1 7.8 7.7 14 6.1 5.3 2.0 1 1 0 1 1 1 0 SlyX KfrA_N PF11740.3 gi|385802569|ref|YP_005838969.1| - 6.4 7.2 10.7 9.5 6.6 2.2 3.2 2 1 0 2 2 2 0 Plasmid replication region DNA-binding N-term OrfB_IS605 PF01385.14 gi|385802570|ref|YP_005838970.1| - 3.8e-53 180.2 0.0 4.9e-53 179.8 0.0 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385802570|ref|YP_005838970.1| - 5.9e-20 70.6 1.2 1.4e-19 69.4 0.8 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Ribosomal_L37ae PF01780.14 gi|385802570|ref|YP_005838970.1| - 0.19 11.5 1.4 0.37 10.6 0.3 1.9 2 0 0 2 2 2 0 Ribosomal L37ae protein family NUDIX PF00293.23 gi|385802571|ref|YP_005838971.1| - 2.4e-17 62.8 0.1 3.2e-17 62.4 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain Glyco_transf_21 PF13506.1 gi|385802573|ref|YP_005838973.1| - 0.0071 15.6 0.0 0.022 14.0 0.0 1.7 1 1 1 2 2 2 1 Glycosyl transferase family 21 Aldo_ket_red PF00248.16 gi|385802574|ref|YP_005838974.1| - 6.6e-36 123.5 0.0 6e-25 87.6 0.0 2.1 2 0 0 2 2 2 2 Aldo/keto reductase family NAD_binding_10 PF13460.1 gi|385802575|ref|YP_005838975.1| - 2.8e-19 69.8 0.1 5.4e-19 68.9 0.1 1.4 2 0 0 2 2 2 1 NADH(P)-binding Epimerase PF01370.16 gi|385802575|ref|YP_005838975.1| - 4.3e-11 42.6 0.1 6.3e-11 42.1 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|385802575|ref|YP_005838975.1| - 1.4e-08 33.7 0.0 2.2e-08 33.1 0.0 1.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.13 gi|385802575|ref|YP_005838975.1| - 1.7e-08 34.4 0.0 4e-08 33.2 0.0 1.7 1 0 0 1 1 1 1 TrkA-N domain ApbA PF02558.11 gi|385802575|ref|YP_005838975.1| - 1.8e-05 24.2 0.1 3.2e-05 23.4 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.9 gi|385802575|ref|YP_005838975.1| - 6.6e-05 22.3 0.2 0.0003 20.2 0.1 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.22 gi|385802575|ref|YP_005838975.1| - 0.00046 20.5 0.3 0.0009 19.5 0.2 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase RmlD_sub_bind PF04321.12 gi|385802575|ref|YP_005838975.1| - 0.0023 16.8 0.1 0.0046 15.8 0.1 1.5 1 0 0 1 1 1 1 RmlD substrate binding domain DAO PF01266.19 gi|385802575|ref|YP_005838975.1| - 0.0058 15.5 2.3 0.0066 15.4 1.5 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase F420_oxidored PF03807.12 gi|385802575|ref|YP_005838975.1| - 0.0058 17.0 0.1 0.013 15.8 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Rossmann-like PF10727.4 gi|385802575|ref|YP_005838975.1| - 0.022 14.4 0.1 0.058 13.1 0.1 1.7 1 0 0 1 1 1 0 Rossmann-like domain NAD_binding_2 PF03446.10 gi|385802575|ref|YP_005838975.1| - 0.036 13.9 0.2 0.087 12.6 0.0 1.7 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF3834 PF12916.2 gi|385802576|ref|YP_005838976.1| - 0.088 11.8 0.1 0.098 11.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3834) URO-D PF01208.12 gi|385802580|ref|YP_005838980.1| - 0.13 11.1 0.0 0.22 10.4 0.0 1.3 1 0 0 1 1 1 0 Uroporphyrinogen decarboxylase (URO-D) T2SF PF00482.18 gi|385802581|ref|YP_005838981.1| - 0.012 15.5 0.0 0.088 12.7 0.0 2.7 2 1 0 2 2 2 0 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|385802582|ref|YP_005838982.1| - 5.3e-31 107.5 0.2 8.4e-31 106.8 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|385802582|ref|YP_005838982.1| - 0.013 15.0 0.1 0.036 13.6 0.1 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|385802582|ref|YP_005838982.1| - 0.025 14.5 1.8 0.1 12.5 0.0 2.8 4 0 0 4 4 4 0 AAA ATPase domain AAA_30 PF13604.1 gi|385802582|ref|YP_005838982.1| - 0.036 13.6 0.1 0.095 12.2 0.1 1.7 1 0 0 1 1 1 0 AAA domain zf-RING_6 PF14835.1 gi|385802582|ref|YP_005838982.1| - 0.043 13.6 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 zf-RING of BARD1-type protein ABC_tran PF00005.22 gi|385802582|ref|YP_005838982.1| - 0.099 12.9 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 ABC transporter cobW PF02492.14 gi|385802582|ref|YP_005838982.1| - 0.12 11.7 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF4407 PF14362.1 gi|385802584|ref|YP_005838984.1| - 4.3 6.2 14.6 1.1 8.1 8.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) A2M_N PF01835.14 gi|385802586|ref|YP_005838986.1| - 1.6e-07 31.4 6.5 0.0019 18.3 0.1 4.4 4 1 0 4 4 4 2 MG2 domain FlgD_ig PF13860.1 gi|385802586|ref|YP_005838986.1| - 4.1e-06 26.4 1.3 4.1e-06 26.4 0.9 4.6 4 1 1 5 5 5 1 FlgD Ig-like domain Trypan_PARP PF05887.6 gi|385802586|ref|YP_005838986.1| - 0.00098 18.9 19.5 0.0019 18.0 10.8 2.5 2 0 0 2 2 2 1 Procyclic acidic repetitive protein (PARP) Y_Y_Y PF07495.8 gi|385802586|ref|YP_005838986.1| - 0.011 15.5 0.2 9.1 6.1 0.0 3.0 2 0 0 2 2 2 0 Y_Y_Y domain DUF3244 PF11589.3 gi|385802586|ref|YP_005838986.1| - 0.24 11.1 12.7 4.1 7.1 0.3 5.3 4 2 1 5 5 5 0 Domain of unknown function (DUF3244) LrgA PF03788.9 gi|385802587|ref|YP_005838987.1| - 0.024 14.3 2.1 0.039 13.6 1.5 1.4 1 0 0 1 1 1 0 LrgA family Pox_A9 PF04835.7 gi|385802587|ref|YP_005838987.1| - 0.1 12.4 0.4 0.1 12.4 0.3 2.3 3 0 0 3 3 3 0 A9 protein conserved region DUF4225 PF13988.1 gi|385802587|ref|YP_005838987.1| - 6.5 6.1 6.1 10 5.5 4.0 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF4225) TetR_N PF00440.18 gi|385802588|ref|YP_005838988.1| - 4.8e-12 45.3 0.3 1.4e-11 43.8 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.1 gi|385802588|ref|YP_005838988.1| - 9.1e-11 41.8 1.0 2.6e-10 40.3 0.3 1.9 2 0 0 2 2 2 1 Bacterial transcriptional repressor TetR_C_5 PF08360.6 gi|385802588|ref|YP_005838988.1| - 0.0036 17.2 0.0 0.0062 16.5 0.0 1.3 1 0 0 1 1 1 1 QacR-like protein, C-terminal region CARDB PF07705.6 gi|385802589|ref|YP_005838989.1| - 9.7e-14 51.2 10.8 2.9e-05 24.0 0.2 5.0 4 1 0 4 4 4 4 CARDB NPCBM_assoc PF10633.4 gi|385802589|ref|YP_005838989.1| - 7.1e-12 45.2 22.3 0.0076 16.2 0.9 6.1 5 2 0 5 5 5 4 NPCBM-associated, NEW3 domain of alpha-galactosidase HIG_1_N PF04588.8 gi|385802589|ref|YP_005838989.1| - 0.15 11.7 1.4 0.31 10.8 1.0 1.5 1 0 0 1 1 1 0 Hypoxia induced protein conserved region DUF756 PF05506.7 gi|385802589|ref|YP_005838989.1| - 0.26 11.8 1.8 84 3.7 0.0 4.7 4 2 1 5 5 5 0 Domain of unknown function (DUF756) MMPL PF03176.10 gi|385802590|ref|YP_005838990.1| - 6.5e-40 136.8 16.5 2.6e-21 75.6 5.0 2.5 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|385802590|ref|YP_005838990.1| - 1.1e-07 31.4 0.1 1.1e-07 31.4 0.1 3.0 3 1 0 3 3 3 1 Sterol-sensing domain of SREBP cleavage-activation ACR_tran PF00873.14 gi|385802590|ref|YP_005838990.1| - 0.00014 19.4 14.2 0.0043 14.5 1.9 2.2 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family Patched PF02460.13 gi|385802590|ref|YP_005838990.1| - 0.0025 15.8 5.2 0.0088 14.0 1.2 2.7 3 0 0 3 3 3 1 Patched family Usp PF00582.21 gi|385802591|ref|YP_005838991.1| - 6.1e-27 94.5 0.3 9.8e-27 93.8 0.2 1.3 1 0 0 1 1 1 1 Universal stress protein family Phosphodiest PF01663.17 gi|385802592|ref|YP_005838992.1| - 4.6e-56 190.7 0.1 5.2e-56 190.5 0.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|385802592|ref|YP_005838992.1| - 0.00075 18.7 1.7 0.0034 16.6 0.5 2.4 2 1 0 2 2 2 1 Sulfatase Metalloenzyme PF01676.13 gi|385802592|ref|YP_005838992.1| - 0.021 14.1 0.3 0.34 10.2 0.0 2.3 2 0 0 2 2 2 0 Metalloenzyme superfamily SHOCT PF09851.4 gi|385802593|ref|YP_005838993.1| - 8.9e-08 31.3 0.0 1.3e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|385802593|ref|YP_005838993.1| - 0.0012 18.5 0.0 0.0018 17.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) Herpes_UL45 PF05473.7 gi|385802593|ref|YP_005838993.1| - 2 7.8 6.9 8.9 5.6 0.4 2.4 2 1 0 2 2 2 0 UL45 protein DNA_pol_B_thumb PF14791.1 gi|385802595|ref|YP_005838995.1| - 1.4e-24 85.5 0.0 3.5e-24 84.2 0.0 1.7 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.1 gi|385802595|ref|YP_005838995.1| - 1.9e-16 59.9 5.2 3.5e-14 52.7 0.6 4.1 3 1 1 4 4 4 1 Helix-hairpin-helix domain HHH_5 PF14520.1 gi|385802595|ref|YP_005838995.1| - 1.5e-14 53.9 4.8 1.8e-10 40.8 0.4 3.2 2 0 0 2 2 2 2 Helix-hairpin-helix domain PHP PF02811.14 gi|385802595|ref|YP_005838995.1| - 1.2e-11 44.7 0.0 4.2e-11 42.9 0.0 2.0 1 1 0 1 1 1 1 PHP domain HHH_2 PF12826.2 gi|385802595|ref|YP_005838995.1| - 8.3e-05 22.3 3.7 0.19 11.6 0.1 4.2 2 1 2 4 4 4 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|385802595|ref|YP_005838995.1| - 0.0015 17.9 0.0 0.0085 15.6 0.0 2.4 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda DNA_pol_B_palm PF14792.1 gi|385802595|ref|YP_005838995.1| - 0.0064 16.5 0.2 0.033 14.2 0.0 2.3 2 0 0 2 2 2 1 DNA polymerase beta palm Amidohydro_2 PF04909.9 gi|385802595|ref|YP_005838995.1| - 0.02 14.4 1.2 0.078 12.5 0.2 2.4 2 0 0 2 2 2 0 Amidohydrolase HHH PF00633.18 gi|385802595|ref|YP_005838995.1| - 0.034 13.8 2.5 0.1 12.3 0.0 3.2 3 1 1 4 4 4 0 Helix-hairpin-helix motif Mut7-C PF01927.11 gi|385802596|ref|YP_005838996.1| - 1.7e-48 164.3 0.0 2.3e-48 163.9 0.0 1.2 1 0 0 1 1 1 1 Mut7-C RNAse domain Trypan_PARP PF05887.6 gi|385802597|ref|YP_005838997.1| - 0.016 15.0 1.6 0.03 14.1 1.1 1.5 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) DUF605 PF04652.11 gi|385802597|ref|YP_005838997.1| - 1.2 8.4 16.2 1.6 8.0 11.2 1.1 1 0 0 1 1 1 0 Vta1 like Virul_fac_BrkB PF03631.10 gi|385802597|ref|YP_005838997.1| - 6.4 6.0 13.1 0.32 10.3 4.8 1.8 1 1 1 2 2 2 0 Virulence factor BrkB Abi PF02517.11 gi|529167402|ref|YP_005838999.2| - 8.6e-07 29.0 5.7 2.2e-05 24.4 3.9 2.3 1 1 0 1 1 1 1 CAAX protease self-immunity SBF PF01758.11 gi|385802600|ref|YP_005839000.1| - 3.6e-29 101.4 14.6 3.6e-29 101.4 10.1 1.7 2 0 0 2 2 2 1 Sodium Bile acid symporter family DUF3329 PF11808.3 gi|385802600|ref|YP_005839000.1| - 0.7 10.0 2.9 50 4.0 0.1 3.6 3 0 0 3 3 3 0 Domain of unknown function (DUF3329) DDE_Tnp_1 PF01609.16 gi|385802601|ref|YP_005839001.1| - 1.9e-14 53.7 0.0 3.3e-14 52.9 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.1 gi|385802601|ref|YP_005839001.1| - 0.0024 16.1 0.0 0.0035 15.5 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain group 1 DUF2015 PF09435.5 gi|385802601|ref|YP_005839001.1| - 0.097 12.4 0.2 0.21 11.3 0.1 1.6 1 0 0 1 1 1 0 Fungal protein of unknown function (DUF2015) DUF650 PF04894.7 gi|385802602|ref|YP_005839002.1| - 1.4e-97 326.4 0.0 1.7e-97 326.1 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|385802602|ref|YP_005839002.1| - 4.3e-35 119.6 0.0 6.7e-35 119.0 0.0 1.3 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) Pept_tRNA_hydro PF01195.14 gi|385802602|ref|YP_005839002.1| - 0.12 11.7 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Peptidyl-tRNA hydrolase TFIIB PF00382.14 gi|385802603|ref|YP_005839003.1| - 4e-47 157.9 2.1 2.6e-25 88.0 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|385802603|ref|YP_005839003.1| - 0.0004 19.6 0.1 0.0009 18.5 0.1 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_23 PF13384.1 gi|385802603|ref|YP_005839003.1| - 0.0081 15.7 0.4 0.62 9.7 0.0 3.4 3 0 0 3 3 3 1 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|385802603|ref|YP_005839003.1| - 0.025 13.8 1.0 0.31 10.3 0.0 3.1 2 1 1 3 3 3 0 Sigma-70, region 4 HTH_17 PF12728.2 gi|385802603|ref|YP_005839003.1| - 0.059 13.6 0.7 0.89 9.8 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain Cyclin_N PF00134.18 gi|385802603|ref|YP_005839003.1| - 0.13 11.8 0.0 0.37 10.3 0.0 1.8 2 0 0 2 2 2 0 Cyclin, N-terminal domain RVT_3 PF13456.1 gi|385802604|ref|YP_005839004.1| - 4.1e-22 77.7 0.0 5.8e-22 77.2 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.19 gi|385802604|ref|YP_005839004.1| - 5.8e-15 55.8 0.0 9.4e-15 55.1 0.0 1.3 1 0 0 1 1 1 1 RNase H Phage_int_SAM_4 PF13495.1 gi|385802605|ref|YP_005839005.1| - 0.007 16.6 0.1 0.013 15.8 0.0 1.4 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain PadR PF03551.9 gi|385802606|ref|YP_005839006.1| - 1.9e-17 62.8 0.3 2.7e-17 62.2 0.2 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|385802606|ref|YP_005839006.1| - 5.6e-07 29.7 0.1 1.3e-06 28.5 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|385802606|ref|YP_005839006.1| - 0.0037 17.0 0.1 0.0065 16.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.6 gi|385802606|ref|YP_005839006.1| - 0.0059 16.2 0.1 0.0089 15.6 0.0 1.3 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) DUF4364 PF14277.1 gi|385802606|ref|YP_005839006.1| - 0.039 13.5 0.0 0.052 13.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Rio2_N PF09202.6 gi|385802606|ref|YP_005839006.1| - 0.058 13.4 0.1 0.1 12.6 0.1 1.4 1 0 0 1 1 1 0 Rio2, N-terminal FUR PF01475.14 gi|385802606|ref|YP_005839006.1| - 0.079 12.8 0.0 0.089 12.7 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family Pyrophosphatase PF00719.14 gi|385802607|ref|YP_005839007.1| - 5.2e-54 181.9 0.8 6e-54 181.7 0.6 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase Rhomboid PF01694.17 gi|385802609|ref|YP_005839009.1| - 5.2e-27 94.6 17.7 5.2e-27 94.6 12.3 1.6 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.11 gi|385802609|ref|YP_005839009.1| - 1.3e-13 50.5 6.9 1.8e-13 50.1 4.8 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.5 gi|385802609|ref|YP_005839009.1| - 0.00043 20.5 1.3 0.00074 19.7 0.4 1.8 1 1 0 1 1 1 1 Eukaryotic integral membrane protein (DUF1751) zf-C2H2_6 PF13912.1 gi|385802609|ref|YP_005839009.1| - 3.6 7.6 6.7 5.2 7.1 1.4 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger Zn-ribbon_8 PF09723.5 gi|385802609|ref|YP_005839009.1| - 8.2 6.4 7.3 7.8 6.5 1.7 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Endonuclease_5 PF04493.9 gi|385802610|ref|YP_005839010.1| - 2.7e-50 170.5 0.0 3.6e-50 170.1 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|385802610|ref|YP_005839010.1| - 0.047 12.7 0.3 4.3 6.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF99 adh_short PF00106.20 gi|385802611|ref|YP_005839011.1| - 3.3e-32 111.7 0.9 6.1e-32 110.8 0.1 1.7 2 0 0 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|385802611|ref|YP_005839011.1| - 1.1e-19 71.1 0.0 1.5e-19 70.7 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|385802611|ref|YP_005839011.1| - 7e-14 51.8 0.0 1.2e-13 51.1 0.0 1.4 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.5 gi|385802611|ref|YP_005839011.1| - 4.2e-09 35.9 0.0 6.1e-09 35.4 0.0 1.1 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) NAD_binding_10 PF13460.1 gi|385802611|ref|YP_005839011.1| - 1.2e-07 31.9 0.4 4.7e-07 29.9 0.3 2.0 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|385802611|ref|YP_005839011.1| - 0.00013 21.4 0.0 0.00068 19.1 0.0 2.2 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|385802611|ref|YP_005839011.1| - 0.0055 16.4 0.0 0.016 14.9 0.0 1.7 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase RmlD_sub_bind PF04321.12 gi|385802611|ref|YP_005839011.1| - 0.011 14.7 0.1 0.025 13.4 0.0 1.7 2 0 0 2 2 2 0 RmlD substrate binding domain NmrA PF05368.8 gi|385802611|ref|YP_005839011.1| - 0.038 13.2 0.0 0.084 12.1 0.0 1.6 2 0 0 2 2 2 0 NmrA-like family TrkA_N PF02254.13 gi|385802611|ref|YP_005839011.1| - 0.059 13.3 0.0 0.15 12.0 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain ApbA PF02558.11 gi|385802611|ref|YP_005839011.1| - 0.13 11.7 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ArsA_ATPase PF02374.10 gi|385802612|ref|YP_005839012.1| - 8.8e-81 271.2 0.0 4.7e-53 180.2 0.0 2.8 2 1 0 2 2 2 2 Anion-transporting ATPase CbiA PF01656.18 gi|385802612|ref|YP_005839012.1| - 1.8e-11 43.7 0.0 6.4e-11 42.0 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|385802612|ref|YP_005839012.1| - 2.3e-06 27.6 0.2 0.0032 17.4 0.0 2.7 3 0 0 3 3 3 2 AAA domain AAA_25 PF13481.1 gi|385802612|ref|YP_005839012.1| - 0.00032 20.1 0.4 0.016 14.6 0.0 3.0 3 0 0 3 3 3 1 AAA domain SRP54 PF00448.17 gi|385802612|ref|YP_005839012.1| - 0.00069 19.1 0.2 0.26 10.6 0.3 2.5 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain Zeta_toxin PF06414.7 gi|385802612|ref|YP_005839012.1| - 0.0015 17.7 0.2 0.021 13.9 0.0 2.2 2 0 0 2 2 2 1 Zeta toxin YhjQ PF06564.7 gi|385802612|ref|YP_005839012.1| - 0.0057 16.0 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 YhjQ protein IstB_IS21 PF01695.12 gi|385802612|ref|YP_005839012.1| - 0.02 14.2 0.3 0.042 13.2 0.2 1.5 1 1 0 1 1 1 0 IstB-like ATP binding protein AAA_10 PF12846.2 gi|385802612|ref|YP_005839012.1| - 0.021 14.2 0.3 0.059 12.8 0.2 1.8 1 1 0 1 1 1 0 AAA-like domain Fer4_NifH PF00142.13 gi|385802612|ref|YP_005839012.1| - 0.021 13.9 0.1 0.035 13.3 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Aminotran_1_2 PF00155.16 gi|385802613|ref|YP_005839013.1| - 5.6e-51 173.5 0.0 6.7e-51 173.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|385802613|ref|YP_005839013.1| - 2.5e-05 23.2 3.7 0.00018 20.4 1.2 2.7 2 1 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|385802613|ref|YP_005839013.1| - 0.0011 18.1 0.1 0.0016 17.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|385802613|ref|YP_005839013.1| - 0.046 12.0 0.1 0.064 11.5 0.1 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme CinA PF02464.12 gi|385802614|ref|YP_005839014.1| - 1.4e-54 183.7 0.4 1.6e-54 183.5 0.2 1.0 1 0 0 1 1 1 1 Competence-damaged protein DUF457 PF04307.9 gi|385802615|ref|YP_005839015.1| - 3.2e-17 62.3 12.2 5.7e-17 61.4 8.5 1.5 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|385802615|ref|YP_005839015.1| - 0.0018 17.9 0.1 0.0033 17.0 0.1 1.4 1 1 0 1 1 1 1 Zinc dependent phospholipase C PHP_C PF13263.1 gi|385802616|ref|YP_005839016.1| - 5.2e-13 48.2 0.0 1.1e-12 47.2 0.0 1.6 1 0 0 1 1 1 1 PHP-associated Spt5-NGN PF03439.8 gi|385802617|ref|YP_005839017.1| - 2.1e-23 81.8 0.0 3.5e-23 81.1 0.0 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|385802617|ref|YP_005839017.1| - 1.3e-07 30.9 1.8 2e-07 30.4 0.1 2.2 3 0 0 3 3 3 1 KOW motif NusG PF02357.14 gi|385802617|ref|YP_005839017.1| - 0.0014 18.8 0.0 0.035 14.3 0.0 2.4 1 1 0 1 1 1 1 Transcription termination factor nusG DUF1469 PF07332.6 gi|385802618|ref|YP_005839018.1| - 0.067 12.9 3.0 0.081 12.6 2.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Tubulin PF00091.20 gi|385802619|ref|YP_005839019.1| - 1.1e-35 123.4 1.0 2.9e-35 122.0 0.7 1.7 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|385802619|ref|YP_005839019.1| - 1.1e-35 121.5 3.2 1.7e-35 120.9 0.9 2.4 2 0 0 2 2 2 1 FtsZ family, C-terminal domain EF-hand_1 PF00036.27 gi|385802619|ref|YP_005839019.1| - 0.04 13.2 0.1 3 7.3 0.0 2.9 2 0 0 2 2 2 0 EF hand EF-hand_6 PF13405.1 gi|385802619|ref|YP_005839019.1| - 0.16 11.9 0.2 40 4.4 0.0 3.0 3 0 0 3 3 3 0 EF-hand domain tRNA_deacylase PF04414.7 gi|385802620|ref|YP_005839020.1| - 8.7e-65 217.8 0.0 1.4e-64 217.1 0.0 1.3 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Shikimate_dh_N PF08501.6 gi|385802621|ref|YP_005839021.1| - 2.1e-26 91.8 0.0 4.7e-26 90.6 0.0 1.6 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|385802621|ref|YP_005839021.1| - 1.1e-12 48.1 0.2 3.1e-12 46.7 0.0 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase FAD_binding_2 PF00890.19 gi|385802621|ref|YP_005839021.1| - 5.1e-06 25.6 2.6 6.9e-06 25.1 1.8 1.2 1 0 0 1 1 1 1 FAD binding domain F420_oxidored PF03807.12 gi|385802621|ref|YP_005839021.1| - 0.001 19.4 1.0 0.0021 18.4 0.7 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|385802621|ref|YP_005839021.1| - 0.0011 18.3 0.4 0.0036 16.6 0.1 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain Thi4 PF01946.12 gi|385802621|ref|YP_005839021.1| - 0.0013 17.8 0.1 0.002 17.2 0.1 1.3 1 0 0 1 1 1 1 Thi4 family THF_DHG_CYH_C PF02882.14 gi|385802621|ref|YP_005839021.1| - 0.0022 17.1 0.0 0.012 14.6 0.0 2.0 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Pyr_redox_2 PF07992.9 gi|385802621|ref|YP_005839021.1| - 0.003 17.4 0.1 0.0047 16.8 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|385802621|ref|YP_005839021.1| - 0.0039 16.6 0.4 0.0065 15.9 0.3 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|385802621|ref|YP_005839021.1| - 0.012 15.3 0.2 0.025 14.3 0.2 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_7 PF13241.1 gi|385802621|ref|YP_005839021.1| - 0.014 15.6 0.0 0.023 14.9 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding GIDA PF01134.17 gi|385802621|ref|YP_005839021.1| - 0.015 14.2 6.2 0.021 13.7 4.3 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|385802621|ref|YP_005839021.1| - 0.016 14.8 0.8 0.023 14.3 0.5 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|385802621|ref|YP_005839021.1| - 0.019 14.0 1.1 0.028 13.4 0.7 1.2 1 0 0 1 1 1 0 FAD binding domain 2-Hacid_dh_C PF02826.14 gi|385802621|ref|YP_005839021.1| - 0.028 13.5 0.1 0.042 12.9 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|385802621|ref|YP_005839021.1| - 0.045 13.5 0.4 0.075 12.8 0.3 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain HI0933_like PF03486.9 gi|385802621|ref|YP_005839021.1| - 0.08 11.4 1.8 0.11 10.9 1.3 1.2 1 0 0 1 1 1 0 HI0933-like protein ThiF PF00899.16 gi|385802621|ref|YP_005839021.1| - 0.083 12.7 0.5 0.32 10.8 0.4 1.9 2 0 0 2 2 2 0 ThiF family NAD_binding_10 PF13460.1 gi|385802621|ref|YP_005839021.1| - 0.13 12.2 2.7 0.17 11.8 1.1 1.7 2 0 0 2 2 2 0 NADH(P)-binding Pyr_redox PF00070.22 gi|385802621|ref|YP_005839021.1| - 0.18 12.2 2.0 0.63 10.4 0.8 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|385802621|ref|YP_005839021.1| - 0.2 11.7 4.3 0.43 10.6 3.0 1.6 1 1 0 1 1 1 0 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|385802621|ref|YP_005839021.1| - 0.24 10.2 5.6 0.34 9.7 3.5 1.5 1 1 0 1 1 1 0 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|385802621|ref|YP_005839021.1| - 0.25 10.3 5.9 0.39 9.7 4.1 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase HHH_5 PF14520.1 gi|385802622|ref|YP_005839022.1| - 3.5e-05 23.8 0.2 6.2e-05 23.0 0.1 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|385802622|ref|YP_005839022.1| - 0.0024 17.8 0.1 0.0062 16.4 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) Cdd1 PF11731.3 gi|385802622|ref|YP_005839022.1| - 0.0058 16.5 0.0 0.01 15.7 0.0 1.4 1 0 0 1 1 1 1 Pathogenicity locus Aminotran_4 PF01063.14 gi|385802623|ref|YP_005839023.1| - 2e-49 168.1 0.0 2.5e-49 167.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class IV Rieske PF00355.21 gi|385802624|ref|YP_005839024.1| - 1.8e-08 33.8 0.0 2.5e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|385802624|ref|YP_005839024.1| - 0.01 15.5 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 0 Rieske-like [2Fe-2S] domain GtrA PF04138.9 gi|385802625|ref|YP_005839025.1| - 1.1e-14 54.3 4.0 1.6e-14 53.8 2.8 1.3 1 0 0 1 1 1 1 GtrA-like protein Glycos_transf_2 PF00535.21 gi|385802626|ref|YP_005839026.1| - 0.0026 17.4 0.0 0.061 12.9 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferase family 2 DUF2298 PF10060.4 gi|385802627|ref|YP_005839027.1| - 3.3e-141 471.3 19.2 4.3e-141 470.9 13.3 1.1 1 0 0 1 1 1 1 Uncharacterized membrane protein (DUF2298) Ibs_toxin PF13956.1 gi|385802627|ref|YP_005839027.1| - 0.019 14.7 0.4 0.099 12.4 0.3 2.3 1 0 0 1 1 1 0 Toxin Ibs, type I toxin-antitoxin system ATP_synth_reg PF14960.1 gi|385802627|ref|YP_005839027.1| - 0.16 11.1 1.7 0.45 9.7 0.1 2.4 2 0 0 2 2 2 0 ATP synthase regulation COX14 PF14880.1 gi|385802627|ref|YP_005839027.1| - 1.1 8.8 6.6 1.3 8.7 0.5 3.0 3 0 0 3 3 3 0 Cytochrome oxidase c assembly Ribosomal_L44 PF00935.14 gi|385802629|ref|YP_005839029.1| - 1.3e-25 89.1 3.9 1.6e-25 88.8 2.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 Terminase_GpA PF05876.7 gi|385802629|ref|YP_005839029.1| - 0.002 16.5 0.4 0.0025 16.2 0.3 1.1 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) zf-ribbon_3 PF13248.1 gi|385802629|ref|YP_005839029.1| - 0.016 14.3 0.5 3.3 7.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|385802629|ref|YP_005839029.1| - 0.019 14.7 2.0 0.055 13.2 1.4 1.7 1 1 0 1 1 1 0 Double zinc ribbon DUF2296 PF10058.4 gi|385802629|ref|YP_005839029.1| - 0.026 14.2 1.0 2.1 8.1 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-Mss51 PF13824.1 gi|385802629|ref|YP_005839029.1| - 0.036 13.9 0.4 0.067 13.0 0.2 1.5 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Lar_restr_allev PF14354.1 gi|385802629|ref|YP_005839029.1| - 0.045 14.0 2.7 1 9.6 1.8 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|385802629|ref|YP_005839029.1| - 0.091 12.5 1.4 4.6 7.1 0.1 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|385802629|ref|YP_005839029.1| - 0.17 11.4 4.5 2.2 7.8 0.8 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Acetone_carb_G PF08882.6 gi|385802629|ref|YP_005839029.1| - 0.18 11.8 0.6 6.1 6.9 0.2 2.1 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit Tnp_zf-ribbon_2 PF13842.1 gi|385802629|ref|YP_005839029.1| - 0.21 12.0 2.1 5.4 7.5 0.1 2.4 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon Nudix_N_2 PF14803.1 gi|385802629|ref|YP_005839029.1| - 0.26 11.0 3.1 7.9 6.2 0.2 2.5 2 1 0 2 2 2 0 Nudix N-terminal zf-B_box PF00643.19 gi|385802629|ref|YP_005839029.1| - 3.3 7.6 9.1 8.9 6.3 0.1 2.1 2 0 0 2 2 2 0 B-box zinc finger Ribosomal_S27e PF01667.12 gi|385802630|ref|YP_005839030.1| - 6.8e-20 70.3 0.7 7.9e-20 70.1 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 Zn-ribbon_8 PF09723.5 gi|385802630|ref|YP_005839030.1| - 0.011 15.6 0.3 0.023 14.6 0.2 1.5 1 0 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|385802630|ref|YP_005839030.1| - 0.046 12.9 2.6 0.089 12.0 1.8 1.5 1 1 0 1 1 1 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|385802630|ref|YP_005839030.1| - 0.07 12.8 0.9 0.17 11.6 0.6 1.6 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Herpes_UL49_1 PF03117.9 gi|385802630|ref|YP_005839030.1| - 0.091 11.8 0.0 0.091 11.8 0.0 1.1 1 0 0 1 1 1 0 UL49 family Baculo_ME53 PF06061.6 gi|385802630|ref|YP_005839030.1| - 0.12 11.3 0.2 0.12 11.3 0.1 1.1 1 0 0 1 1 1 0 Baculoviridae ME53 Ribosomal_L37ae PF01780.14 gi|385802630|ref|YP_005839030.1| - 0.13 12.0 0.4 0.18 11.6 0.3 1.3 1 1 0 1 1 1 0 Ribosomal L37ae protein family Elf1 PF05129.8 gi|385802630|ref|YP_005839030.1| - 0.2 11.3 1.9 0.42 10.3 1.3 1.5 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like TF_Zn_Ribbon PF08271.7 gi|385802630|ref|YP_005839030.1| - 0.33 10.2 3.7 0.1 11.9 0.6 1.7 2 0 0 2 2 2 0 TFIIB zinc-binding zf-IS66 PF13005.2 gi|385802630|ref|YP_005839030.1| - 0.54 10.2 2.1 13 5.8 0.2 2.3 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Prok-RING_1 PF14446.1 gi|385802630|ref|YP_005839030.1| - 0.66 9.7 2.9 1.2 8.9 2.0 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 TFIIS_C PF01096.13 gi|385802630|ref|YP_005839030.1| - 0.67 9.6 4.1 17 5.1 2.8 2.2 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) zf-NADH-PPase PF09297.6 gi|385802630|ref|YP_005839030.1| - 1.4 8.5 4.1 4.3 6.9 0.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF3797 PF12677.2 gi|385802630|ref|YP_005839030.1| - 1.6 8.4 5.1 2.2 7.9 1.9 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zinc_ribbon_4 PF13717.1 gi|385802630|ref|YP_005839030.1| - 1.9 8.2 4.7 46 3.8 3.3 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|385802630|ref|YP_005839030.1| - 2.2 7.9 4.6 40 3.8 3.2 2.2 1 1 0 1 1 1 0 zinc-ribbon domain EIF_2_alpha PF07541.7 gi|385802631|ref|YP_005839031.1| - 7.7e-28 96.5 0.0 1.4e-27 95.6 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|385802631|ref|YP_005839031.1| - 1.8e-15 56.7 1.3 1.1e-14 54.2 0.2 2.2 2 0 0 2 2 2 1 S1 RNA binding domain Collagen_bind PF05737.7 gi|385802631|ref|YP_005839031.1| - 0.016 15.3 0.3 0.028 14.5 0.2 1.3 1 0 0 1 1 1 0 Collagen binding domain DUF1804 PF08822.6 gi|385802631|ref|YP_005839031.1| - 0.079 12.6 0.6 1 9.0 0.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1804) CsrA PF02599.11 gi|385802631|ref|YP_005839031.1| - 0.11 12.2 0.2 0.5 10.1 0.0 2.1 2 0 0 2 2 2 0 Global regulator protein family IFT46_B_C PF12317.3 gi|385802631|ref|YP_005839031.1| - 0.34 10.2 2.0 0.8 9.0 1.1 1.8 1 1 1 2 2 2 0 Intraflagellar transport complex B protein 46 C terminal Nop10p PF04135.7 gi|385802632|ref|YP_005839032.1| - 2.4e-24 84.8 0.3 2.7e-24 84.6 0.2 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family Foamy_BEL PF03274.9 gi|385802632|ref|YP_005839032.1| - 0.11 11.7 0.1 0.11 11.7 0.0 1.0 1 0 0 1 1 1 0 Foamy virus BEL 1/2 protein PAC2 PF09754.4 gi|385802633|ref|YP_005839033.1| - 7.5e-50 169.8 0.2 9.5e-50 169.4 0.1 1.0 1 0 0 1 1 1 1 PAC2 family PhzC-PhzF PF02567.11 gi|385802635|ref|YP_005839035.1| - 3.3e-58 197.1 0.0 3.9e-58 196.8 0.0 1.1 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DAP_epimerase PF01678.14 gi|385802635|ref|YP_005839035.1| - 0.00026 20.8 0.2 0.0011 18.8 0.0 2.1 2 1 1 3 3 3 1 Diaminopimelate epimerase Pro_racemase PF05544.6 gi|385802635|ref|YP_005839035.1| - 0.0024 16.7 0.0 0.0032 16.3 0.0 1.2 1 0 0 1 1 1 1 Proline racemase Pribosyltran PF00156.22 gi|385802636|ref|YP_005839036.1| - 1.2e-21 76.6 0.0 2e-21 76.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|385802636|ref|YP_005839036.1| - 0.038 13.2 0.0 0.056 12.6 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Mem_trans PF03547.13 gi|385802637|ref|YP_005839037.1| - 1.1e-27 96.3 28.5 2.2e-14 52.6 4.6 2.0 1 1 1 2 2 2 2 Membrane transport protein PNP_UDP_1 PF01048.15 gi|385802638|ref|YP_005839038.1| - 8.7e-41 139.4 0.1 1e-40 139.1 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily ScpA_ScpB PF02616.9 gi|385802639|ref|YP_005839039.1| - 3.6e-22 79.1 0.5 3.8e-14 52.8 0.0 2.7 2 1 0 2 2 2 2 ScpA/B protein Rnk_N PF14760.1 gi|385802639|ref|YP_005839039.1| - 0.11 12.5 2.7 3.2 7.8 0.0 2.9 2 0 0 2 2 2 0 Rnk N-terminus SMC_N PF02463.14 gi|385802640|ref|YP_005839040.1| - 9.2e-59 198.3 15.7 1.7e-58 197.4 10.9 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|385802640|ref|YP_005839040.1| - 8.6e-31 106.4 0.0 5.8e-30 103.7 0.0 2.6 2 0 0 2 2 1 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.1 gi|385802640|ref|YP_005839040.1| - 7.5e-16 59.0 1.3 7.5e-16 59.0 0.9 7.4 2 2 1 3 3 1 1 AAA domain AAA_21 PF13304.1 gi|385802640|ref|YP_005839040.1| - 2.5e-14 53.9 13.1 5.7e-09 36.3 0.6 4.0 3 1 0 3 3 3 2 AAA domain Reo_sigmaC PF04582.7 gi|385802640|ref|YP_005839040.1| - 4.3e-11 42.5 44.4 0.0021 17.2 2.9 6.2 2 2 4 6 6 6 6 Reovirus sigma C capsid protein DUF3584 PF12128.3 gi|385802640|ref|YP_005839040.1| - 1.4e-10 39.2 109.3 1.5e-05 22.6 6.2 5.3 2 2 3 5 5 5 4 Protein of unknown function (DUF3584) IncA PF04156.9 gi|385802640|ref|YP_005839040.1| - 6.9e-10 38.8 126.9 0.0011 18.5 9.3 8.4 3 2 5 8 8 8 5 IncA protein AAA_13 PF13166.1 gi|385802640|ref|YP_005839040.1| - 9.6e-10 37.5 99.7 0.0042 15.6 9.7 6.6 3 2 2 6 6 6 5 AAA domain Filament PF00038.16 gi|385802640|ref|YP_005839040.1| - 3.3e-07 30.0 110.0 5.9e-06 25.9 27.8 5.6 2 2 3 5 5 4 3 Intermediate filament protein DUF4200 PF13863.1 gi|385802640|ref|YP_005839040.1| - 8.8e-07 28.9 121.9 0.00071 19.5 8.2 9.4 4 3 5 9 9 9 6 Domain of unknown function (DUF4200) AAA_15 PF13175.1 gi|385802640|ref|YP_005839040.1| - 3.6e-06 26.3 0.0 8.7e-05 21.7 0.0 4.6 4 1 1 5 5 3 2 AAA ATPase domain APG6 PF04111.7 gi|385802640|ref|YP_005839040.1| - 8.5e-06 25.0 119.3 0.009 15.0 11.8 7.1 2 2 5 7 7 7 4 Autophagy protein Apg6 Laminin_II PF06009.7 gi|385802640|ref|YP_005839040.1| - 2.5e-05 24.0 75.4 0.083 12.6 2.2 8.5 5 2 3 9 9 8 3 Laminin Domain II Seryl_tRNA_N PF02403.17 gi|385802640|ref|YP_005839040.1| - 2.5e-05 24.2 102.8 0.022 14.7 8.9 9.7 3 2 6 10 10 10 5 Seryl-tRNA synthetase N-terminal domain AAA_29 PF13555.1 gi|385802640|ref|YP_005839040.1| - 2.5e-05 23.6 0.0 7.9e-05 22.1 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain CENP-F_leu_zip PF10473.4 gi|385802640|ref|YP_005839040.1| - 3.7e-05 23.6 117.8 0.0077 16.0 12.9 8.9 2 2 5 8 8 7 6 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Myosin_tail_1 PF01576.14 gi|385802640|ref|YP_005839040.1| - 4.7e-05 21.3 59.9 4.7e-05 21.3 41.5 3.6 2 2 0 2 2 2 1 Myosin tail TPR_MLP1_2 PF07926.7 gi|385802640|ref|YP_005839040.1| - 6e-05 22.7 107.3 0.011 15.4 13.1 7.5 3 3 2 5 5 4 4 TPR/MLP1/MLP2-like protein GAS PF13851.1 gi|385802640|ref|YP_005839040.1| - 0.00018 20.7 93.7 0.00098 18.3 11.6 6.7 2 2 3 6 6 5 3 Growth-arrest specific micro-tubule binding Cast PF10174.4 gi|385802640|ref|YP_005839040.1| - 0.001 17.2 111.3 0.045 11.8 26.1 3.1 2 1 0 2 2 2 2 RIM-binding protein of the cytomatrix active zone EzrA PF06160.7 gi|385802640|ref|YP_005839040.1| - 0.0014 16.9 90.5 0.071 11.2 7.4 4.0 2 1 1 3 3 3 2 Septation ring formation regulator, EzrA DUF4201 PF13870.1 gi|385802640|ref|YP_005839040.1| - 0.0015 17.9 72.6 0.0073 15.7 0.8 7.9 2 2 6 8 8 7 3 Domain of unknown function (DUF4201) Fib_alpha PF08702.5 gi|385802640|ref|YP_005839040.1| - 0.0029 17.7 3.9 0.0029 17.7 2.7 7.0 3 2 3 6 6 6 1 Fibrinogen alpha/beta chain family Tropomyosin PF00261.15 gi|385802640|ref|YP_005839040.1| - 0.0039 16.2 23.7 0.0039 16.2 16.4 5.8 3 2 2 5 5 3 2 Tropomyosin Tropomyosin_1 PF12718.2 gi|385802640|ref|YP_005839040.1| - 0.005 16.7 8.7 0.005 16.7 6.0 8.9 2 2 6 8 8 7 4 Tropomyosin like MscS_porin PF12795.2 gi|385802640|ref|YP_005839040.1| - 0.0059 15.9 17.7 0.0059 15.9 12.3 5.9 3 2 3 6 6 5 2 Mechanosensitive ion channel porin domain Spc7 PF08317.6 gi|385802640|ref|YP_005839040.1| - 0.022 13.4 104.2 0.1 11.2 7.7 7.4 2 2 7 9 9 9 0 Spc7 kinetochore protein ATG16 PF08614.6 gi|385802640|ref|YP_005839040.1| - 0.03 14.1 108.4 0.029 14.1 11.6 8.0 2 2 4 6 6 5 0 Autophagy protein 16 (ATG16) BLOC1_2 PF10046.4 gi|385802640|ref|YP_005839040.1| - 0.054 13.6 0.2 0.054 13.6 0.1 10.3 3 2 8 11 11 10 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ERM PF00769.14 gi|385802640|ref|YP_005839040.1| - 0.13 11.7 112.7 0.024 14.1 25.5 5.6 3 2 1 5 5 4 0 Ezrin/radixin/moesin family DUF869 PF05911.6 gi|385802640|ref|YP_005839040.1| - 0.18 9.9 95.6 0.045 11.9 10.1 5.1 2 2 2 5 5 5 0 Plant protein of unknown function (DUF869) TMF_DNA_bd PF12329.3 gi|385802640|ref|YP_005839040.1| - 0.2 11.4 0.1 0.015 15.0 7.7 11.3 3 2 8 12 12 12 0 TATA element modulatory factor 1 DNA binding WEMBL PF05701.6 gi|385802640|ref|YP_005839040.1| - 0.22 9.9 118.9 0.13 10.6 13.6 4.8 2 2 2 4 4 4 0 Weak chloroplast movement under blue light ADIP PF11559.3 gi|385802640|ref|YP_005839040.1| - 0.24 11.2 98.4 0.084 12.7 4.4 9.4 3 3 6 10 10 10 0 Afadin- and alpha -actinin-Binding Mnd1 PF03962.10 gi|385802640|ref|YP_005839040.1| - 0.43 10.2 106.0 0.035 13.7 0.8 8.5 2 2 6 8 8 8 0 Mnd1 family FliJ PF02050.11 gi|385802640|ref|YP_005839040.1| - 1 9.4 83.2 0.93 9.5 7.5 9.6 3 3 8 11 11 10 0 Flagellar FliJ protein AAA_27 PF13514.1 gi|385802640|ref|YP_005839040.1| - 1.1 6.7 119.3 0.57 7.8 4.2 4.7 3 2 2 5 5 5 0 AAA domain M_domain PF12938.2 gi|385802640|ref|YP_005839040.1| - 2.8 7.6 7.7 13 5.4 0.2 4.6 2 2 1 3 3 3 0 M domain of GW182 Syntaxin-6_N PF09177.6 gi|385802640|ref|YP_005839040.1| - 3.8 7.9 87.1 0.13 12.7 1.2 9.9 2 2 8 10 10 9 0 Syntaxin 6, N-terminal Tropomyosin PF00261.15 gi|385802641|ref|YP_005839041.1| - 0.005 15.9 1.0 0.005 15.9 0.7 1.8 2 0 0 2 2 2 1 Tropomyosin DUF4482 PF14818.1 gi|385802641|ref|YP_005839041.1| - 0.014 16.0 4.0 0.018 15.6 2.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4482) FlaC_arch PF05377.6 gi|385802641|ref|YP_005839041.1| - 0.024 14.5 1.8 0.035 13.9 1.2 1.2 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) IncA PF04156.9 gi|385802641|ref|YP_005839041.1| - 0.071 12.6 5.2 0.089 12.3 3.6 1.1 1 0 0 1 1 1 0 IncA protein TBPIP PF07106.8 gi|385802641|ref|YP_005839041.1| - 0.08 12.4 1.4 0.098 12.2 0.7 1.4 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HSBP1 PF06825.7 gi|385802641|ref|YP_005839041.1| - 0.093 12.3 0.4 0.21 11.1 0.0 1.8 2 0 0 2 2 2 0 Heat shock factor binding protein 1 BUD22 PF09073.5 gi|385802641|ref|YP_005839041.1| - 0.11 11.4 8.6 0.14 11.1 6.0 1.0 1 0 0 1 1 1 0 BUD22 HOOK PF05622.7 gi|385802641|ref|YP_005839041.1| - 0.14 9.9 5.4 0.15 9.8 3.7 1.0 1 0 0 1 1 1 0 HOOK protein DUF3294 PF07957.6 gi|385802641|ref|YP_005839041.1| - 0.18 11.2 3.0 0.11 11.9 0.9 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3294) DUF972 PF06156.8 gi|385802641|ref|YP_005839041.1| - 0.23 11.8 2.7 0.29 11.4 1.8 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF972) Striatin PF08232.7 gi|385802641|ref|YP_005839041.1| - 0.33 11.2 3.8 0.48 10.7 2.6 1.3 1 0 0 1 1 1 0 Striatin family Herpes_UL6 PF01763.11 gi|385802641|ref|YP_005839041.1| - 0.37 8.8 3.5 0.44 8.6 2.4 1.0 1 0 0 1 1 1 0 Herpesvirus UL6 like SlyX PF04102.7 gi|385802641|ref|YP_005839041.1| - 0.47 10.8 6.2 0.24 11.7 2.8 1.7 1 1 1 2 2 2 0 SlyX Mod_r PF07200.8 gi|385802641|ref|YP_005839041.1| - 0.53 10.1 5.0 0.6 10.0 3.5 1.1 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein DUF4407 PF14362.1 gi|385802641|ref|YP_005839041.1| - 0.62 8.9 4.7 0.7 8.7 3.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) AATF-Che1 PF13339.1 gi|385802641|ref|YP_005839041.1| - 0.69 10.0 4.9 0.83 9.8 3.4 1.1 1 0 0 1 1 1 0 Apoptosis antagonizing transcription factor V_ATPase_I PF01496.14 gi|385802641|ref|YP_005839041.1| - 1 7.1 3.4 1.1 7.0 2.4 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family TMF_DNA_bd PF12329.3 gi|385802641|ref|YP_005839041.1| - 1 9.2 6.9 0.088 12.6 1.0 1.9 2 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Fmp27_WPPW PF10359.4 gi|385802641|ref|YP_005839041.1| - 1 7.6 7.3 1.2 7.4 5.1 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain IFT57 PF10498.4 gi|385802641|ref|YP_005839041.1| - 1.1 7.9 6.2 1.5 7.4 4.3 1.3 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 SPX PF03105.14 gi|385802641|ref|YP_005839041.1| - 1.6 8.4 6.3 1.8 8.2 4.4 1.1 1 0 0 1 1 1 0 SPX domain Cwf_Cwc_15 PF04889.7 gi|385802641|ref|YP_005839041.1| - 2.3 7.8 11.8 2.7 7.6 8.2 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein Spc24 PF08286.6 gi|385802641|ref|YP_005839041.1| - 4.6 6.9 11.0 0.51 10.0 2.3 2.0 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 CENP-Q PF13094.1 gi|385802641|ref|YP_005839041.1| - 5.7 6.9 8.6 9.6 6.2 6.0 1.5 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF3367 PF11847.3 gi|385802641|ref|YP_005839041.1| - 7.4 4.3 6.1 8 4.2 4.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3367) GatB_N PF02934.10 gi|385802642|ref|YP_005839042.1| - 7.6e-113 376.1 0.0 1.1e-112 375.6 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|385802642|ref|YP_005839042.1| - 1.1e-37 129.0 0.0 1.8e-37 128.3 0.0 1.3 1 0 0 1 1 1 1 GatB domain DUF3018 PF11455.3 gi|385802642|ref|YP_005839042.1| - 0.033 14.1 0.1 0.12 12.2 0.1 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3018) DDE_Tnp_1_2 PF13586.1 gi|385802642|ref|YP_005839042.1| - 0.1 12.7 0.3 3.5 7.8 0.1 2.4 1 1 1 2 2 2 0 Transposase DDE domain Topoisom_bac PF01131.15 gi|385802643|ref|YP_005839043.1| - 5.3e-111 371.2 0.0 7.9e-111 370.7 0.0 1.3 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|385802643|ref|YP_005839043.1| - 2e-20 72.5 0.0 7.5e-20 70.7 0.0 2.0 2 0 0 2 2 2 1 Toprim domain zf-C4_Topoisom PF01396.14 gi|385802643|ref|YP_005839043.1| - 5.9e-20 70.4 3.5 6.8e-13 47.8 0.3 3.0 4 0 0 4 4 3 2 Topoisomerase DNA binding C4 zinc finger HHH_5 PF14520.1 gi|385802643|ref|YP_005839043.1| - 2.7e-07 30.6 0.1 9.8e-07 28.8 0.1 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|385802643|ref|YP_005839043.1| - 5.1e-05 22.7 0.0 0.00013 21.3 0.0 1.7 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.3 gi|385802643|ref|YP_005839043.1| - 0.00066 19.5 0.0 0.0049 16.7 0.0 2.2 2 0 0 2 2 2 1 Pathogenicity locus DUF4332 PF14229.1 gi|385802643|ref|YP_005839043.1| - 0.00073 19.4 0.0 0.0023 17.9 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) Toprim_4 PF13662.1 gi|385802643|ref|YP_005839043.1| - 0.0095 15.9 0.3 0.062 13.3 0.0 2.4 2 0 0 2 2 2 1 Toprim domain IMS_HHH PF11798.3 gi|385802643|ref|YP_005839043.1| - 0.024 14.6 0.0 0.082 12.9 0.0 1.9 2 0 0 2 2 2 0 IMS family HHH motif HHH PF00633.18 gi|385802643|ref|YP_005839043.1| - 0.031 13.9 0.0 0.094 12.4 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif HEXIM PF15313.1 gi|385802643|ref|YP_005839043.1| - 0.096 12.8 0.1 0.28 11.3 0.0 1.8 1 0 0 1 1 1 0 Hexamethylene bis-acetamide-inducible protein TfoX_C PF04994.8 gi|385802643|ref|YP_005839043.1| - 0.16 11.8 0.0 0.35 10.8 0.0 1.5 1 0 0 1 1 1 0 TfoX C-terminal domain DZR PF12773.2 gi|385802643|ref|YP_005839043.1| - 1.2 8.9 4.6 3.2 7.6 0.4 2.8 3 0 0 3 3 3 0 Double zinc ribbon CSD PF00313.17 gi|385802644|ref|YP_005839044.1| - 5.1e-20 71.0 0.1 5.5e-20 70.9 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|385802644|ref|YP_005839044.1| - 0.0012 18.4 0.2 0.0017 18.0 0.1 1.3 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.6 gi|385802644|ref|YP_005839044.1| - 0.022 14.2 2.9 0.033 13.7 2.0 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain CusF_Ec PF11604.3 gi|385802644|ref|YP_005839044.1| - 0.12 12.2 0.0 0.17 11.7 0.0 1.4 1 1 0 1 1 1 0 Copper binding periplasmic protein CusF PcrB PF01884.12 gi|385802645|ref|YP_005839045.1| - 3.7e-47 160.5 0.2 4.3e-47 160.2 0.1 1.0 1 0 0 1 1 1 1 PcrB family CRF-BP PF05428.6 gi|385802645|ref|YP_005839045.1| - 0.06 12.1 0.0 0.094 11.5 0.0 1.2 1 0 0 1 1 1 0 Corticotropin-releasing factor binding protein (CRF-BP) tRNA-synt_2 PF00152.15 gi|385802646|ref|YP_005839046.1| - 4.7e-90 301.7 0.0 6.1e-90 301.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|385802646|ref|YP_005839046.1| - 6.4e-13 48.3 0.1 1.1e-12 47.6 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|385802646|ref|YP_005839046.1| - 0.0054 15.9 0.3 0.053 12.7 0.1 2.4 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) GHMP_kinases_N PF00288.21 gi|385802647|ref|YP_005839047.1| - 0.013 15.5 2.2 0.013 15.5 1.6 1.8 2 0 0 2 2 2 0 GHMP kinases N terminal domain DUF137 PF02006.11 gi|385802648|ref|YP_005839048.1| - 1.1e-72 243.2 4.5 1.4e-72 242.8 3.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 Phage_GPD PF05954.6 gi|385802648|ref|YP_005839048.1| - 0.0025 17.0 0.1 0.0043 16.2 0.1 1.3 1 0 0 1 1 1 1 Phage late control gene D protein (GPD) Trypan_PARP PF05887.6 gi|385802648|ref|YP_005839048.1| - 2.3 8.0 6.6 4.4 7.1 4.5 1.5 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) QueC PF06508.8 gi|385802649|ref|YP_005839049.1| - 0.15 11.3 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC GST_N_2 PF13409.1 gi|385802650|ref|YP_005839050.1| - 3e-24 84.7 0.2 1.2e-23 82.9 0.0 2.0 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.1 gi|385802650|ref|YP_005839050.1| - 7.9e-14 51.2 0.4 1.6e-13 50.3 0.3 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.20 gi|385802650|ref|YP_005839050.1| - 9e-09 35.2 0.1 2.3e-08 33.9 0.1 1.7 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.1 gi|385802650|ref|YP_005839050.1| - 3.8e-08 33.7 0.0 7.4e-08 32.7 0.0 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.1 gi|385802650|ref|YP_005839050.1| - 4.1e-07 30.1 0.0 5e-06 26.6 0.0 2.6 2 1 0 2 2 2 1 Glutathione S-transferase, N-terminal domain HPD PF05044.7 gi|385802650|ref|YP_005839050.1| - 0.059 13.0 0.0 0.098 12.3 0.0 1.3 1 0 0 1 1 1 0 Homeo-prospero domain Rhabdo_M2 PF04785.7 gi|385802650|ref|YP_005839050.1| - 0.08 11.9 0.1 0.17 10.8 0.0 1.5 1 0 0 1 1 1 0 Rhabdovirus matrix protein M2 Thi4 PF01946.12 gi|385802651|ref|YP_005839051.1| - 5.3e-60 202.3 0.9 6.5e-57 192.2 0.6 2.0 1 1 0 1 1 1 1 Thi4 family DAO PF01266.19 gi|385802651|ref|YP_005839051.1| - 1.5e-10 40.5 1.0 5.7e-08 32.0 0.2 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|385802651|ref|YP_005839051.1| - 5.5e-10 39.1 0.1 1.3e-09 37.9 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|385802651|ref|YP_005839051.1| - 6.8e-10 38.5 0.4 1e-09 37.9 0.1 1.4 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.19 gi|385802651|ref|YP_005839051.1| - 3e-09 36.2 2.6 4.7e-08 32.3 1.8 2.2 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|385802651|ref|YP_005839051.1| - 1.1e-07 31.3 0.1 1.5e-07 30.8 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|385802651|ref|YP_005839051.1| - 4.8e-07 28.5 0.1 6.9e-07 28.0 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|385802651|ref|YP_005839051.1| - 2.4e-06 27.5 0.2 3.8e-06 26.9 0.1 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|385802651|ref|YP_005839051.1| - 2.9e-06 27.5 0.4 9.2e-06 25.9 0.3 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|385802651|ref|YP_005839051.1| - 1.7e-05 24.6 0.1 4e-05 23.4 0.1 1.6 1 0 0 1 1 1 1 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|385802651|ref|YP_005839051.1| - 7.4e-05 21.5 0.8 0.0072 14.9 0.1 2.5 2 1 0 2 2 2 1 Tryptophan halogenase Pyr_redox_3 PF13738.1 gi|385802651|ref|YP_005839051.1| - 0.00015 21.8 0.3 0.00035 20.6 0.2 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|385802651|ref|YP_005839051.1| - 0.0002 20.5 0.0 0.00032 19.9 0.0 1.3 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.7 gi|385802651|ref|YP_005839051.1| - 0.0012 17.8 0.4 0.021 13.7 0.1 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_7 PF13241.1 gi|385802651|ref|YP_005839051.1| - 0.0029 17.8 0.0 0.0054 16.9 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding GIDA PF01134.17 gi|385802651|ref|YP_005839051.1| - 0.014 14.2 0.2 0.021 13.6 0.1 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A TrkA_N PF02254.13 gi|385802651|ref|YP_005839051.1| - 0.016 15.2 0.5 0.036 14.0 0.1 1.8 2 0 0 2 2 2 0 TrkA-N domain UDPG_MGDP_dh_N PF03721.9 gi|385802651|ref|YP_005839051.1| - 0.032 13.5 0.1 0.055 12.8 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Aldolase_2 PF10120.4 gi|385802652|ref|YP_005839052.1| - 2.6e-52 176.6 0.0 3.5e-52 176.1 0.0 1.2 1 0 0 1 1 1 1 Putative aldolase HTH_3 PF01381.17 gi|385802652|ref|YP_005839052.1| - 6.2e-07 29.1 0.0 1.5e-06 27.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|385802652|ref|YP_005839052.1| - 8.3e-06 25.9 1.8 2e-05 24.6 0.0 2.3 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|385802652|ref|YP_005839052.1| - 1.2e-05 24.4 2.2 0.00068 18.9 0.0 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_37 PF13744.1 gi|385802652|ref|YP_005839052.1| - 2e-05 24.3 0.0 5.3e-05 22.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|385802652|ref|YP_005839052.1| - 0.00023 20.6 0.1 0.0027 17.3 0.0 2.6 3 0 0 3 3 3 1 Homeodomain-like domain HTH_24 PF13412.1 gi|385802652|ref|YP_005839052.1| - 0.00044 19.5 2.0 0.0016 17.7 0.0 2.6 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_26 PF13443.1 gi|385802652|ref|YP_005839052.1| - 0.00076 19.6 0.0 0.0016 18.6 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_19 PF12844.2 gi|385802652|ref|YP_005839052.1| - 0.0016 18.4 0.0 0.0035 17.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|385802652|ref|YP_005839052.1| - 0.0042 16.6 0.2 0.011 15.3 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|385802652|ref|YP_005839052.1| - 0.0049 16.5 0.0 0.0049 16.5 0.0 2.6 3 0 0 3 3 2 1 MarR family Sigma70_r4_2 PF08281.7 gi|385802652|ref|YP_005839052.1| - 0.023 14.1 2.1 0.24 10.8 0.0 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 Cro PF09048.5 gi|385802652|ref|YP_005839052.1| - 0.028 14.0 0.0 0.06 12.9 0.0 1.5 1 0 0 1 1 1 0 Cro HTH_5 PF01022.15 gi|385802652|ref|YP_005839052.1| - 0.034 13.8 0.0 0.08 12.6 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family P22_Cro PF14549.1 gi|385802652|ref|YP_005839052.1| - 0.035 13.8 0.0 0.074 12.7 0.0 1.5 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro KorB PF08535.5 gi|385802652|ref|YP_005839052.1| - 0.037 14.1 0.0 0.28 11.3 0.0 2.2 2 0 0 2 2 2 0 KorB domain DUF3326 PF11805.3 gi|385802652|ref|YP_005839052.1| - 0.081 11.6 0.0 0.14 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3326) HTH_10 PF04967.7 gi|385802652|ref|YP_005839052.1| - 0.084 12.4 0.4 0.43 10.2 0.0 2.3 3 0 0 3 3 2 0 HTH DNA binding domain HTH_1 PF00126.22 gi|385802652|ref|YP_005839052.1| - 0.091 12.5 0.1 0.31 10.7 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Crp_2 PF13545.1 gi|385802652|ref|YP_005839052.1| - 0.1 12.3 0.0 0.53 10.1 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DUF2481 PF10654.4 gi|385802652|ref|YP_005839052.1| - 0.12 12.1 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) DUF3071 PF11268.3 gi|385802652|ref|YP_005839052.1| - 0.14 11.8 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3071) dUTPase PF00692.14 gi|385802653|ref|YP_005839053.1| - 6.6e-16 57.9 0.0 1.1e-15 57.2 0.0 1.3 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|385802653|ref|YP_005839053.1| - 1.2e-15 56.8 0.1 5.4e-10 38.2 0.0 2.1 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) PTH2 PF01981.11 gi|385802654|ref|YP_005839054.1| - 2.6e-41 139.9 0.1 2.9e-41 139.7 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 HATPase_c PF02518.21 gi|385802655|ref|YP_005839055.1| - 2.4e-20 72.2 0.1 5.6e-20 71.1 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|385802655|ref|YP_005839055.1| - 4.4e-12 46.2 0.0 9.5e-12 45.2 0.0 1.6 1 0 0 1 1 1 1 PAS domain HisKA PF00512.20 gi|385802655|ref|YP_005839055.1| - 2.2e-11 43.5 2.3 1.3e-09 37.9 0.7 3.1 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|385802655|ref|YP_005839055.1| - 3.8e-08 33.0 0.3 1.7e-07 31.0 0.0 2.2 3 0 0 3 3 3 1 PAS fold PAS_3 PF08447.6 gi|385802655|ref|YP_005839055.1| - 0.00035 20.6 0.0 0.00083 19.4 0.0 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.1 gi|385802655|ref|YP_005839055.1| - 0.0004 20.0 0.0 0.00096 18.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|385802655|ref|YP_005839055.1| - 0.001 18.8 0.3 0.0068 16.2 0.0 2.4 2 1 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|385802655|ref|YP_005839055.1| - 0.0085 15.8 0.6 0.023 14.5 0.0 2.0 3 0 0 3 3 3 1 Histidine kinase-like ATPase domain PMC2NT PF08066.7 gi|385802655|ref|YP_005839055.1| - 0.0093 16.2 0.9 1.2 9.5 0.1 3.4 2 1 1 3 3 3 1 PMC2NT (NUC016) domain PAS_4 PF08448.5 gi|385802655|ref|YP_005839055.1| - 0.02 14.9 0.1 0.039 13.9 0.1 1.5 1 0 0 1 1 1 0 PAS fold TruD PF01142.13 gi|385802656|ref|YP_005839056.1| - 8.6e-89 297.8 0.0 1.9e-85 286.8 0.0 2.1 1 1 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) DUF1770 PF08589.5 gi|385802656|ref|YP_005839056.1| - 0.072 13.7 0.1 0.35 11.5 0.0 2.2 2 0 0 2 2 2 0 Fungal protein of unknown function (DUF1770) DUF2103 PF09876.4 gi|385802657|ref|YP_005839057.1| - 5.5e-46 154.5 0.1 8.9e-46 153.8 0.1 1.3 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) zf-FPG_IleRS PF06827.9 gi|385802657|ref|YP_005839057.1| - 1.4 8.6 4.1 2.3 7.9 2.1 2.0 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Ribosomal_L37ae PF01780.14 gi|385802658|ref|YP_005839058.1| - 2.6e-23 81.6 0.6 3.1e-23 81.4 0.4 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family DNA_RNApol_7kD PF03604.8 gi|385802659|ref|YP_005839059.1| - 2.8e-10 39.4 4.7 3.3e-10 39.2 3.3 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit A2L_zn_ribbon PF08792.5 gi|385802659|ref|YP_005839059.1| - 0.00021 20.6 1.4 0.0003 20.1 1.0 1.2 1 0 0 1 1 1 1 A2L zinc ribbon domain DUF329 PF03884.9 gi|385802659|ref|YP_005839059.1| - 0.00066 19.1 3.9 0.013 15.0 1.0 1.9 1 1 1 2 2 2 2 Domain of unknown function (DUF329) HypA PF01155.14 gi|385802659|ref|YP_005839059.1| - 0.00084 19.0 0.4 0.00084 19.0 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|385802659|ref|YP_005839059.1| - 0.0044 16.3 2.1 0.006 15.8 1.5 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|385802659|ref|YP_005839059.1| - 0.0048 16.6 4.4 0.16 11.7 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|385802659|ref|YP_005839059.1| - 0.0085 15.2 2.4 0.098 11.8 0.2 2.0 1 1 1 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|385802659|ref|YP_005839059.1| - 0.017 14.9 0.6 0.033 13.9 0.4 1.5 1 1 0 1 1 1 0 Double zinc ribbon DUF951 PF06107.6 gi|385802659|ref|YP_005839059.1| - 0.026 14.0 1.6 2.4 7.7 0.1 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) zinc-ribbons_6 PF07191.7 gi|385802659|ref|YP_005839059.1| - 0.028 14.1 0.2 0.035 13.8 0.1 1.1 1 0 0 1 1 1 0 zinc-ribbons Cys_rich_CPXG PF14255.1 gi|385802659|ref|YP_005839059.1| - 0.035 13.9 0.5 0.15 11.8 0.0 1.9 2 0 0 2 2 2 0 Cysteine-rich CPXCG Prok-RING_4 PF14447.1 gi|385802659|ref|YP_005839059.1| - 0.036 13.6 0.4 0.043 13.3 0.3 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 OrfB_Zn_ribbon PF07282.6 gi|385802659|ref|YP_005839059.1| - 0.042 13.5 1.1 0.05 13.2 0.8 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Prok-RING_1 PF14446.1 gi|385802659|ref|YP_005839059.1| - 0.042 13.5 1.5 0.29 10.8 1.2 1.8 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 C1_1 PF00130.17 gi|385802659|ref|YP_005839059.1| - 0.053 13.2 0.6 0.066 12.9 0.4 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Lar_restr_allev PF14354.1 gi|385802659|ref|YP_005839059.1| - 0.057 13.7 1.9 0.063 13.5 0.1 1.8 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-AN1 PF01428.11 gi|385802659|ref|YP_005839059.1| - 0.068 13.0 1.4 0.16 11.8 1.0 1.6 1 1 1 2 2 2 0 AN1-like Zinc finger zf-Di19 PF05605.7 gi|385802659|ref|YP_005839059.1| - 0.078 13.1 0.4 1.1 9.3 0.0 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-HIT PF04438.11 gi|385802659|ref|YP_005839059.1| - 0.091 12.4 3.3 0.81 9.3 0.5 2.1 2 0 0 2 2 2 0 HIT zinc finger zinc_ribbon_2 PF13240.1 gi|385802659|ref|YP_005839059.1| - 0.14 11.6 4.4 1.6 8.2 3.1 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|385802659|ref|YP_005839059.1| - 0.15 12.0 5.1 1.1 9.3 3.5 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf-C2HC5 PF06221.8 gi|385802659|ref|YP_005839059.1| - 0.15 11.8 0.7 0.73 9.6 0.5 1.9 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-RING_3 PF14369.1 gi|385802659|ref|YP_005839059.1| - 0.16 11.9 1.3 0.26 11.3 0.9 1.4 1 0 0 1 1 1 0 zinc-finger UPF0547 PF10571.4 gi|385802659|ref|YP_005839059.1| - 0.21 11.3 1.5 0.21 11.3 1.0 2.3 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 TFIIS_C PF01096.13 gi|385802659|ref|YP_005839059.1| - 0.22 11.1 1.1 16 5.2 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Desulfoferrod_N PF06397.7 gi|385802659|ref|YP_005839059.1| - 0.3 10.5 2.2 4.1 6.8 0.2 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain Sgf11 PF08209.6 gi|385802659|ref|YP_005839059.1| - 0.38 10.1 3.7 1.2 8.5 0.3 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-C2H2_4 PF13894.1 gi|385802659|ref|YP_005839059.1| - 0.39 11.1 1.8 6.7 7.2 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zf-Sec23_Sec24 PF04810.10 gi|385802659|ref|YP_005839059.1| - 0.45 10.1 0.1 0.45 10.1 0.1 2.0 1 1 0 2 2 2 0 Sec23/Sec24 zinc finger zinc_ribbon_4 PF13717.1 gi|385802659|ref|YP_005839059.1| - 1.4 8.6 6.2 77 3.1 4.3 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|385802659|ref|YP_005839059.1| - 1.6 8.3 6.3 90 2.7 4.4 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Mu-like_Com PF10122.4 gi|385802659|ref|YP_005839059.1| - 3.4 6.7 6.6 5.2 6.1 0.9 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com Zn_Tnp_IS1 PF03811.8 gi|385802659|ref|YP_005839059.1| - 6.6 6.3 6.7 6.3 6.3 0.2 2.1 2 0 0 2 2 2 0 InsA N-terminal domain zf-C2HC_2 PF13913.1 gi|385802659|ref|YP_005839059.1| - 7.6 6.3 6.6 11 5.8 0.5 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Pcc1 PF09341.5 gi|385802660|ref|YP_005839060.1| - 3.5e-15 55.7 0.2 5.5e-15 55.1 0.1 1.3 1 0 0 1 1 1 1 Transcription factor Pcc1 Prefoldin_2 PF01920.15 gi|385802661|ref|YP_005839061.1| - 4.7e-23 80.9 18.1 5.3e-23 80.8 12.6 1.0 1 0 0 1 1 1 1 Prefoldin subunit ALIX_LYPXL_bnd PF13949.1 gi|385802661|ref|YP_005839061.1| - 0.00094 18.2 8.6 0.0012 17.9 6.0 1.1 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV Prefoldin PF02996.12 gi|385802661|ref|YP_005839061.1| - 0.0039 16.8 13.6 0.29 10.8 9.4 2.3 1 1 0 1 1 1 1 Prefoldin subunit CobN-Mg_chel PF02514.11 gi|385802661|ref|YP_005839061.1| - 0.011 13.2 2.3 0.013 12.9 1.6 1.0 1 0 0 1 1 1 0 CobN/Magnesium Chelatase DUF3610 PF12272.3 gi|385802661|ref|YP_005839061.1| - 0.017 14.8 1.2 0.037 13.6 0.3 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3610) Laminin_I PF06008.9 gi|385802661|ref|YP_005839061.1| - 0.024 13.9 15.3 0.21 10.8 1.1 2.1 1 1 0 2 2 2 0 Laminin Domain I CK2S PF15011.1 gi|385802661|ref|YP_005839061.1| - 0.027 14.2 5.1 0.09 12.5 3.5 1.8 1 1 0 1 1 1 0 Casein Kinase 2 substrate eIF3_subunit PF08597.5 gi|385802661|ref|YP_005839061.1| - 0.03 13.8 6.5 0.039 13.5 4.5 1.1 1 0 0 1 1 1 0 Translation initiation factor eIF3 subunit SseC PF04888.7 gi|385802661|ref|YP_005839061.1| - 0.033 13.5 0.2 0.033 13.5 0.2 2.1 2 0 0 2 2 2 0 Secretion system effector C (SseC) like family DUF4164 PF13747.1 gi|385802661|ref|YP_005839061.1| - 0.04 14.0 15.1 0.24 11.5 1.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) bZIP_1 PF00170.16 gi|385802661|ref|YP_005839061.1| - 0.046 13.6 1.3 0.046 13.6 0.9 2.2 2 0 0 2 2 2 0 bZIP transcription factor NPV_P10 PF05531.7 gi|385802661|ref|YP_005839061.1| - 0.057 13.6 9.8 0.12 12.5 2.0 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Radical_SAM_N PF08497.5 gi|385802661|ref|YP_005839061.1| - 0.057 12.3 1.4 0.069 12.0 0.9 1.1 1 0 0 1 1 1 0 Radical SAM N-terminal CDC37_N PF03234.9 gi|385802661|ref|YP_005839061.1| - 0.11 12.8 9.2 0.13 12.5 6.4 1.1 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding PilJ PF13675.1 gi|385802661|ref|YP_005839061.1| - 0.14 12.4 9.4 2.4 8.4 6.6 2.3 1 1 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF4407 PF14362.1 gi|385802661|ref|YP_005839061.1| - 0.15 11.0 10.5 0.39 9.6 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) FlgN PF05130.7 gi|385802661|ref|YP_005839061.1| - 0.15 12.3 10.2 0.23 11.6 7.0 1.3 1 0 0 1 1 1 0 FlgN protein Acyl-CoA_dh_C PF12806.2 gi|385802661|ref|YP_005839061.1| - 0.15 11.8 1.7 7.5 6.4 0.6 2.2 2 0 0 2 2 2 0 Acetyl-CoA dehydrogenase C-terminal like Sigma70_ner PF04546.8 gi|385802661|ref|YP_005839061.1| - 0.15 11.6 11.6 0.053 13.1 2.2 2.0 1 1 1 2 2 2 0 Sigma-70, non-essential region Phage_GPO PF05929.6 gi|385802661|ref|YP_005839061.1| - 0.2 10.8 9.3 0.55 9.4 6.5 1.5 1 1 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase COG2 PF06148.6 gi|385802661|ref|YP_005839061.1| - 0.21 11.4 12.5 0.15 11.9 1.5 2.0 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF4404 PF14357.1 gi|385802661|ref|YP_005839061.1| - 0.22 11.9 9.2 0.56 10.6 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) WXG100 PF06013.7 gi|385802661|ref|YP_005839061.1| - 0.25 11.3 10.8 3.2 7.8 1.1 2.7 2 1 0 2 2 2 0 Proteins of 100 residues with WXG DUF3584 PF12128.3 gi|385802661|ref|YP_005839061.1| - 0.3 8.3 11.0 0.4 7.9 7.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF1664 PF07889.7 gi|385802661|ref|YP_005839061.1| - 0.32 10.8 9.3 0.14 11.9 1.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) TraF_2 PF13729.1 gi|385802661|ref|YP_005839061.1| - 0.4 9.4 9.3 0.078 11.7 0.4 2.0 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein DUF4140 PF13600.1 gi|385802661|ref|YP_005839061.1| - 0.46 10.9 15.6 0.14 12.6 1.8 2.3 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF972 PF06156.8 gi|385802661|ref|YP_005839061.1| - 0.47 10.8 8.5 0.55 10.5 0.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF972) FH2 PF02181.18 gi|385802661|ref|YP_005839061.1| - 0.47 9.2 8.4 0.58 8.9 5.8 1.0 1 0 0 1 1 1 0 Formin Homology 2 Domain Syntaxin PF00804.20 gi|385802661|ref|YP_005839061.1| - 0.47 10.6 5.9 1.4 9.0 0.5 2.2 2 0 0 2 2 2 0 Syntaxin Hemerythrin PF01814.18 gi|385802661|ref|YP_005839061.1| - 0.62 10.2 8.7 3.9 7.6 6.0 1.9 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain PP-binding_2 PF14573.1 gi|385802661|ref|YP_005839061.1| - 0.64 10.0 4.6 10 6.2 0.1 2.3 2 0 0 2 2 2 0 Acyl-carrier TRCF PF03461.10 gi|385802661|ref|YP_005839061.1| - 0.68 9.9 4.2 2.9 7.9 0.2 2.8 1 1 2 3 3 3 0 TRCF domain TPR_MLP1_2 PF07926.7 gi|385802661|ref|YP_005839061.1| - 0.68 9.6 17.1 2.2 8.0 1.2 2.2 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Sec8_exocyst PF04048.9 gi|385802661|ref|YP_005839061.1| - 0.72 9.4 6.4 0.29 10.7 0.8 2.0 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain Tektin PF03148.9 gi|385802661|ref|YP_005839061.1| - 0.72 8.3 13.7 1 7.8 9.5 1.2 1 0 0 1 1 1 0 Tektin family CENP-F_leu_zip PF10473.4 gi|385802661|ref|YP_005839061.1| - 0.74 9.6 18.4 0.28 11.0 3.6 2.1 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Cortex-I_coil PF09304.5 gi|385802661|ref|YP_005839061.1| - 0.79 9.7 16.6 0.54 10.3 4.1 2.0 1 1 1 2 2 2 0 Cortexillin I, coiled coil Snapin_Pallidin PF14712.1 gi|385802661|ref|YP_005839061.1| - 0.79 10.0 12.7 0.3 11.3 1.7 2.2 2 0 0 2 2 2 0 Snapin/Pallidin AAA_27 PF13514.1 gi|385802661|ref|YP_005839061.1| - 0.84 7.2 12.8 1.1 6.8 8.8 1.1 1 0 0 1 1 1 0 AAA domain DASH_Dam1 PF08653.5 gi|385802661|ref|YP_005839061.1| - 0.9 9.3 5.7 3 7.6 0.3 2.8 2 2 0 2 2 2 0 DASH complex subunit Dam1 Fzo_mitofusin PF04799.8 gi|385802661|ref|YP_005839061.1| - 0.92 8.8 9.5 1.7 8.0 1.3 2.1 1 1 1 2 2 2 0 fzo-like conserved region Fijivirus_P9-2 PF06837.6 gi|385802661|ref|YP_005839061.1| - 0.97 8.5 3.7 2 7.5 0.7 2.0 1 1 1 2 2 2 0 Fijivirus P9-2 protein PspA_IM30 PF04012.7 gi|385802661|ref|YP_005839061.1| - 1 8.6 17.7 5.4 6.3 5.9 1.9 1 1 0 1 1 1 0 PspA/IM30 family Phasin PF05597.6 gi|385802661|ref|YP_005839061.1| - 1.1 9.0 10.1 1.3 8.7 5.8 1.9 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) OPA3 PF07047.7 gi|385802661|ref|YP_005839061.1| - 1.3 8.8 6.8 0.93 9.2 3.6 1.4 1 1 1 2 2 2 0 Optic atrophy 3 protein (OPA3) Spc24 PF08286.6 gi|385802661|ref|YP_005839061.1| - 1.3 8.7 16.8 0.19 11.4 1.9 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF4200 PF13863.1 gi|385802661|ref|YP_005839061.1| - 1.3 8.9 17.0 0.79 9.6 3.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) FlaC_arch PF05377.6 gi|385802661|ref|YP_005839061.1| - 1.4 8.8 10.0 0.094 12.6 1.8 2.4 2 1 1 3 3 2 0 Flagella accessory protein C (FlaC) DUF3450 PF11932.3 gi|385802661|ref|YP_005839061.1| - 1.6 7.9 17.7 2.3 7.4 4.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) PCEMA1 PF07418.6 gi|385802661|ref|YP_005839061.1| - 1.7 7.9 7.6 2 7.7 5.3 1.0 1 0 0 1 1 1 0 Acidic phosphoprotein precursor PCEMA1 Med10 PF09748.4 gi|385802661|ref|YP_005839061.1| - 1.9 8.2 4.8 23 4.8 3.3 2.0 1 1 0 1 1 1 0 Transcription factor subunit Med10 of Mediator complex ERp29 PF07749.7 gi|385802661|ref|YP_005839061.1| - 2.1 9.0 5.5 3.4 8.3 3.0 1.8 1 1 1 2 2 2 0 Endoplasmic reticulum protein ERp29, C-terminal domain IncA PF04156.9 gi|385802661|ref|YP_005839061.1| - 2.2 7.8 22.0 7.2 6.1 15.3 1.6 1 1 0 1 1 1 0 IncA protein Baculo_PEP_C PF04513.7 gi|385802661|ref|YP_005839061.1| - 2.3 8.0 8.2 8.3 6.2 5.7 1.8 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus V_ATPase_I PF01496.14 gi|385802661|ref|YP_005839061.1| - 2.4 5.9 12.5 10 3.8 8.8 1.7 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Syntaxin-6_N PF09177.6 gi|385802661|ref|YP_005839061.1| - 2.4 8.6 9.7 60 4.1 6.6 2.4 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Mnd1 PF03962.10 gi|385802661|ref|YP_005839061.1| - 2.5 7.7 14.1 1.3 8.6 1.2 2.0 1 1 1 2 2 2 0 Mnd1 family DASH_Dad2 PF08654.5 gi|385802661|ref|YP_005839061.1| - 2.7 8.0 11.7 0.82 9.7 0.8 2.6 1 1 1 3 3 3 0 DASH complex subunit Dad2 Lebercilin PF15619.1 gi|385802661|ref|YP_005839061.1| - 2.8 7.2 14.9 6.3 6.1 10.3 1.5 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease CorA PF01544.13 gi|385802661|ref|YP_005839061.1| - 2.9 6.8 10.3 13 4.7 7.3 1.8 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein HSP70 PF00012.15 gi|385802661|ref|YP_005839061.1| - 3.9 5.2 9.5 4.8 4.9 6.6 1.0 1 0 0 1 1 1 0 Hsp70 protein Seryl_tRNA_N PF02403.17 gi|385802661|ref|YP_005839061.1| - 4 7.4 13.7 3.1 7.8 1.0 2.2 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain AMP-binding_C_2 PF14535.1 gi|385802661|ref|YP_005839061.1| - 4.2 7.4 5.9 1.3 9.0 1.2 2.0 1 1 1 2 2 2 0 AMP-binding enzyme C-terminal domain APG6 PF04111.7 gi|385802661|ref|YP_005839061.1| - 4.5 6.2 18.4 7.2 5.5 12.8 1.3 1 1 0 1 1 1 0 Autophagy protein Apg6 ERM PF00769.14 gi|385802661|ref|YP_005839061.1| - 4.8 6.6 16.9 7.5 6.0 11.7 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Prominin PF05478.6 gi|385802661|ref|YP_005839061.1| - 5.1 4.4 6.8 12 3.2 4.8 1.4 1 1 0 1 1 1 0 Prominin Fib_alpha PF08702.5 gi|385802661|ref|YP_005839061.1| - 5.3 7.1 8.6 2 8.5 0.8 2.0 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF2408 PF10303.4 gi|385802661|ref|YP_005839061.1| - 5.5 7.1 8.7 25 4.9 6.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) DUF4559 PF15112.1 gi|385802661|ref|YP_005839061.1| - 5.7 6.0 9.4 7.7 5.5 6.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) DUF964 PF06133.6 gi|385802661|ref|YP_005839061.1| - 5.8 6.9 17.6 0.99 9.4 4.3 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF964) Laminin_II PF06009.7 gi|385802661|ref|YP_005839061.1| - 5.8 6.6 9.6 59 3.4 6.7 2.0 1 1 0 1 1 1 0 Laminin Domain II BLOC1_2 PF10046.4 gi|385802661|ref|YP_005839061.1| - 6.4 6.9 11.4 53 4.0 2.4 2.3 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Atg14 PF10186.4 gi|385802661|ref|YP_005839061.1| - 7 5.5 11.2 22 3.8 7.7 1.6 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 bZIP_Maf PF03131.12 gi|385802661|ref|YP_005839061.1| - 7.7 6.8 11.4 3.8 7.8 1.7 2.2 2 0 0 2 2 2 0 bZIP Maf transcription factor DUF904 PF06005.7 gi|385802661|ref|YP_005839061.1| - 7.8 6.8 16.3 0.51 10.6 2.8 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF904) Bap31 PF05529.7 gi|385802661|ref|YP_005839061.1| - 7.8 5.8 9.1 12 5.3 6.3 1.3 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like DUF948 PF06103.6 gi|385802661|ref|YP_005839061.1| - 7.9 6.4 7.5 4.4 7.2 0.6 2.3 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Lectin_N PF03954.9 gi|385802661|ref|YP_005839061.1| - 8.1 5.8 6.9 31 3.9 4.8 1.8 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain Syntaxin_2 PF14523.1 gi|385802661|ref|YP_005839061.1| - 8.8 6.4 8.5 3.2 7.8 1.3 2.1 1 1 0 1 1 1 0 Syntaxin-like protein GAS PF13851.1 gi|385802661|ref|YP_005839061.1| - 9.2 5.4 17.6 65 2.6 12.1 1.8 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Sec34 PF04136.10 gi|385802661|ref|YP_005839061.1| - 9.8 5.8 11.6 6.5 6.4 2.8 2.0 1 1 1 2 2 2 0 Sec34-like family DUF3194 PF11419.3 gi|385802662|ref|YP_005839062.1| - 0.0014 18.8 1.5 0.002 18.2 0.9 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3194) DUF2070 PF09843.4 gi|385802663|ref|YP_005839063.1| - 9.3e-55 184.8 0.7 1.5e-54 184.1 0.1 1.6 2 0 0 2 2 2 1 Predicted membrane protein (DUF2070) GATase PF00117.23 gi|385802664|ref|YP_005839064.1| - 4.1e-36 124.2 0.0 4.6e-36 124.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|385802664|ref|YP_005839064.1| - 9.6e-16 57.8 2.3 5.6e-12 45.5 0.2 2.9 2 1 0 2 2 2 2 Peptidase C26 GATase_3 PF07685.9 gi|385802664|ref|YP_005839064.1| - 0.034 13.7 0.2 0.065 12.8 0.0 1.6 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain DUF968 PF06147.6 gi|385802665|ref|YP_005839065.1| - 0.0024 17.8 1.2 1.5 8.6 0.1 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF968) An_peroxidase PF03098.10 gi|385802665|ref|YP_005839065.1| - 0.025 12.9 0.0 0.033 12.5 0.0 1.1 1 0 0 1 1 1 0 Animal haem peroxidase DUF192 PF02643.10 gi|385802666|ref|YP_005839066.1| - 4.3e-16 58.5 0.0 5e-16 58.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 HMGL-like PF00682.14 gi|385802667|ref|YP_005839067.1| - 1.2e-56 192.0 0.7 1.2e-56 192.0 0.5 1.7 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.5 gi|385802667|ref|YP_005839067.1| - 1.9e-30 105.3 0.7 4e-30 104.3 0.5 1.6 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain AP_endonuc_2 PF01261.19 gi|385802667|ref|YP_005839067.1| - 0.017 14.4 0.1 0.052 12.8 0.0 1.9 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel DUF3631 PF12307.3 gi|385802667|ref|YP_005839067.1| - 0.13 12.1 0.1 0.23 11.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3631) Integrase_AP2 PF14657.1 gi|385802668|ref|YP_005839068.1| - 0.15 11.8 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 AP2-like DNA-binding integrase domain ABC_tran PF00005.22 gi|385802670|ref|YP_005839070.1| - 1.5e-29 103.0 0.0 5.3e-29 101.2 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|385802670|ref|YP_005839070.1| - 4.5e-12 46.5 0.3 4.7e-06 26.7 0.0 2.5 3 0 0 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|385802670|ref|YP_005839070.1| - 0.00024 20.2 0.0 0.16 11.0 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|385802670|ref|YP_005839070.1| - 0.00025 21.4 0.1 0.00065 20.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|385802670|ref|YP_005839070.1| - 0.00028 20.3 0.2 0.0016 17.9 0.1 2.1 1 1 1 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|385802670|ref|YP_005839070.1| - 0.0011 18.4 0.1 0.0035 16.8 0.0 1.7 1 1 0 1 1 1 1 AAA-like domain AAA_16 PF13191.1 gi|385802670|ref|YP_005839070.1| - 0.0019 18.2 0.0 0.0045 16.9 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|385802670|ref|YP_005839070.1| - 0.0022 17.5 0.2 0.0042 16.5 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain UPF0079 PF02367.12 gi|385802670|ref|YP_005839070.1| - 0.0048 16.5 0.3 0.012 15.2 0.1 1.7 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 SMC_N PF02463.14 gi|385802670|ref|YP_005839070.1| - 0.0062 15.7 0.0 0.024 13.8 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|385802670|ref|YP_005839070.1| - 0.0066 15.6 0.1 0.015 14.5 0.1 1.7 1 1 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|385802670|ref|YP_005839070.1| - 0.0077 16.3 0.3 0.073 13.2 0.2 2.2 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|385802670|ref|YP_005839070.1| - 0.0097 15.0 0.0 0.029 13.4 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin Arch_ATPase PF01637.13 gi|385802670|ref|YP_005839070.1| - 0.013 15.1 0.0 0.025 14.2 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA PF00004.24 gi|385802670|ref|YP_005839070.1| - 0.017 15.3 0.0 0.063 13.4 0.0 2.0 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.14 gi|385802670|ref|YP_005839070.1| - 0.034 13.6 0.2 0.087 12.2 0.2 1.7 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|385802670|ref|YP_005839070.1| - 0.034 14.0 0.0 0.12 12.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|385802670|ref|YP_005839070.1| - 0.04 13.7 0.0 0.091 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|385802670|ref|YP_005839070.1| - 0.056 13.1 0.5 0.22 11.2 0.1 2.2 2 0 0 2 2 2 0 Part of AAA domain Stimulus_sens_1 PF13756.1 gi|385802670|ref|YP_005839070.1| - 0.072 13.4 0.0 13 6.1 0.0 2.6 2 0 0 2 2 2 0 Stimulus-sensing domain MobB PF03205.9 gi|385802670|ref|YP_005839070.1| - 0.076 12.7 0.3 0.23 11.1 0.2 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|385802670|ref|YP_005839070.1| - 0.082 13.7 0.1 0.23 12.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain ABC_cobalt PF09819.4 gi|385802672|ref|YP_005839072.1| - 2.4 8.1 9.4 9.6 6.1 6.5 1.8 1 1 0 1 1 1 0 ABC-type cobalt transport system, permease component DUF3084 PF11283.3 gi|385802672|ref|YP_005839072.1| - 8.6 6.3 8.2 2.6 7.9 0.3 3.0 1 1 3 4 4 4 0 Protein of unknown function (DUF3084) FAD_binding_7 PF03441.9 gi|385802673|ref|YP_005839073.1| - 1.2e-81 274.0 0.2 1.5e-81 273.7 0.2 1.1 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|385802673|ref|YP_005839073.1| - 8.4e-36 123.2 0.1 1.3e-35 122.5 0.0 1.3 1 0 0 1 1 1 1 DNA photolyase Usp PF00582.21 gi|385802673|ref|YP_005839073.1| - 0.021 15.0 0.1 0.043 14.0 0.0 1.5 1 0 0 1 1 1 0 Universal stress protein family F420_oxidored PF03807.12 gi|385802674|ref|YP_005839074.1| - 2.3e-19 69.5 0.0 4e-19 68.8 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent adh_short PF00106.20 gi|385802674|ref|YP_005839074.1| - 0.0044 16.9 2.9 0.018 14.9 0.0 2.5 2 1 0 2 2 2 1 short chain dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|385802674|ref|YP_005839074.1| - 0.0099 15.6 0.0 0.021 14.5 0.0 1.5 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PDH PF02153.12 gi|385802674|ref|YP_005839074.1| - 0.011 14.6 0.1 0.017 14.0 0.0 1.3 1 0 0 1 1 1 0 Prephenate dehydrogenase KR PF08659.5 gi|385802674|ref|YP_005839074.1| - 0.029 14.0 0.3 0.072 12.7 0.0 1.7 2 1 0 2 2 2 0 KR domain Bac_luciferase PF00296.15 gi|385802674|ref|YP_005839074.1| - 0.032 13.3 0.3 0.058 12.5 0.2 1.5 1 1 0 1 1 1 0 Luciferase-like monooxygenase Semialdhyde_dh PF01118.19 gi|385802674|ref|YP_005839074.1| - 0.065 13.5 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain ApbA PF02558.11 gi|385802674|ref|YP_005839074.1| - 0.12 11.8 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA PRA-PH PF01503.12 gi|385802675|ref|YP_005839075.1| - 9.4e-10 38.6 0.4 1.1e-09 38.4 0.3 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|385802675|ref|YP_005839075.1| - 0.006 16.5 0.4 0.0078 16.1 0.3 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain Toxin_35 PF10530.4 gi|385802675|ref|YP_005839075.1| - 0.1 12.7 4.7 0.15 12.1 3.2 1.2 1 0 0 1 1 1 0 Toxin with inhibitor cystine knot ICK or Knottin scaffold SNO PF01174.14 gi|385802676|ref|YP_005839076.1| - 1.1e-50 171.8 0.0 1.3e-50 171.6 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|385802676|ref|YP_005839076.1| - 1.3e-10 41.1 0.0 2.2e-10 40.3 0.0 1.5 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.12 gi|385802676|ref|YP_005839076.1| - 7.9e-05 22.4 0.0 0.00011 21.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.23 gi|385802676|ref|YP_005839076.1| - 0.00029 20.3 0.0 0.00053 19.4 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.19 gi|385802676|ref|YP_005839076.1| - 0.00035 20.0 0.1 0.00052 19.5 0.1 1.5 1 1 0 1 1 1 1 DJ-1/PfpI family BPL_N PF09825.4 gi|385802676|ref|YP_005839076.1| - 0.015 14.0 0.0 0.15 10.8 0.0 2.0 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal DUF4066 PF13278.1 gi|385802676|ref|YP_005839076.1| - 0.02 14.1 0.1 0.036 13.3 0.1 1.4 1 0 0 1 1 1 0 Putative amidotransferase Aconitase PF00330.15 gi|385802676|ref|YP_005839076.1| - 0.068 11.6 0.0 0.091 11.2 0.0 1.1 1 0 0 1 1 1 0 Aconitase family (aconitate hydratase) Sec61_beta PF03911.11 gi|385802677|ref|YP_005839077.1| - 1.2e-08 34.5 0.0 1.6e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Sec61beta family SnoaL_2 PF12680.2 gi|385802678|ref|YP_005839078.1| - 1.8e-09 37.9 3.2 2.2e-09 37.6 2.2 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_3 PF13474.1 gi|385802678|ref|YP_005839078.1| - 2e-06 27.8 1.7 2.3e-06 27.6 1.2 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.1 gi|385802678|ref|YP_005839078.1| - 0.00017 21.7 1.5 0.00023 21.3 1.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4440) LEH PF07858.7 gi|385802678|ref|YP_005839078.1| - 0.0041 17.1 0.5 0.012 15.6 0.3 1.7 1 1 0 1 1 1 1 Limonene-1,2-epoxide hydrolase catalytic domain FRD2 PF03197.8 gi|385802678|ref|YP_005839078.1| - 0.087 13.3 0.7 0.14 12.7 0.3 1.3 1 1 0 1 1 1 0 Bacteriophage FRD2 protein NTF2 PF02136.15 gi|385802678|ref|YP_005839078.1| - 0.089 13.1 0.1 0.12 12.8 0.1 1.3 1 1 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain HHH_5 PF14520.1 gi|385802679|ref|YP_005839079.1| - 3.7e-07 30.2 0.4 9.9e-07 28.8 0.2 1.7 1 1 1 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|385802679|ref|YP_005839079.1| - 0.00065 19.5 0.9 0.0036 17.1 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif DUF896 PF05979.7 gi|385802679|ref|YP_005839079.1| - 0.014 14.9 0.3 0.033 13.7 0.2 1.7 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF896) HHH PF00633.18 gi|385802679|ref|YP_005839079.1| - 0.099 12.3 0.1 0.7 9.7 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix motif ABC_tran PF00005.22 gi|385802681|ref|YP_005839081.1| - 9.2e-33 113.4 0.0 2e-32 112.3 0.0 1.5 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|385802681|ref|YP_005839081.1| - 5.8e-19 68.2 0.5 1.3e-18 67.0 0.3 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|385802681|ref|YP_005839081.1| - 1.5e-07 31.7 0.2 4.1e-05 23.6 0.1 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|385802681|ref|YP_005839081.1| - 0.0048 16.1 0.2 0.023 13.9 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|385802681|ref|YP_005839081.1| - 0.0062 16.0 0.6 0.011 15.2 0.4 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|385802681|ref|YP_005839081.1| - 0.053 13.6 1.6 0.72 9.9 1.1 2.3 1 1 0 1 1 1 0 AAA domain AIG1 PF04548.11 gi|385802681|ref|YP_005839081.1| - 0.058 12.4 0.4 0.097 11.7 0.3 1.3 1 0 0 1 1 1 0 AIG1 family DUF258 PF03193.11 gi|385802681|ref|YP_005839081.1| - 0.082 12.0 0.6 0.29 10.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|385802681|ref|YP_005839081.1| - 0.11 12.3 0.1 0.77 9.7 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.22 gi|385802682|ref|YP_005839082.1| - 1.5e-24 86.8 0.0 2.5e-24 86.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|385802682|ref|YP_005839082.1| - 9.9e-17 61.0 0.0 2e-16 60.0 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|385802682|ref|YP_005839082.1| - 1.3e-08 35.1 0.1 3.2e-07 30.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|385802682|ref|YP_005839082.1| - 0.0001 21.8 0.0 0.0083 15.5 0.0 2.0 1 1 1 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|385802682|ref|YP_005839082.1| - 0.0022 18.1 0.5 2.3 8.3 0.1 2.5 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|385802682|ref|YP_005839082.1| - 0.0054 16.7 0.2 0.023 14.6 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain ATP-synt_ab PF00006.20 gi|385802682|ref|YP_005839082.1| - 0.023 14.2 0.0 0.033 13.7 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.1 gi|385802682|ref|YP_005839082.1| - 0.061 12.8 0.1 0.12 11.8 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|385802682|ref|YP_005839082.1| - 0.066 12.6 0.1 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_15 PF13175.1 gi|385802682|ref|YP_005839082.1| - 0.16 10.9 0.0 0.16 10.9 0.0 2.2 3 0 0 3 3 3 0 AAA ATPase domain DUF87 PF01935.12 gi|385802682|ref|YP_005839082.1| - 0.37 10.5 2.4 0.34 10.6 0.3 1.8 2 0 0 2 2 2 0 Domain of unknown function DUF87 BPD_transp_1 PF00528.17 gi|385802683|ref|YP_005839083.1| - 3.1e-29 101.7 16.1 3.1e-29 101.7 11.2 2.2 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|385802683|ref|YP_005839083.1| - 4e-10 38.9 0.9 1.5e-09 37.0 0.1 2.4 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|385802684|ref|YP_005839084.1| - 2.6e-37 128.1 10.5 2.6e-37 128.1 7.3 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|385802685|ref|YP_005839085.1| - 6.9e-50 169.9 0.3 9.8e-50 169.4 0.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|385802685|ref|YP_005839085.1| - 0.0019 18.0 0.6 0.0051 16.7 0.4 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence LPAM_2 PF13627.1 gi|385802685|ref|YP_005839085.1| - 3.2 7.5 6.0 5.1 6.9 4.2 1.3 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site AA_permease_2 PF13520.1 gi|385802688|ref|YP_005839088.1| - 2.5e-57 194.3 48.8 3.1e-57 194.0 33.8 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|385802688|ref|YP_005839088.1| - 1.1e-49 169.0 44.6 1.5e-49 168.6 30.9 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.1 gi|385802688|ref|YP_005839088.1| - 9.3e-06 25.4 5.3 9.3e-06 25.4 3.7 4.0 5 0 0 5 5 5 1 C-terminus of AA_permease TrkA_C PF02080.16 gi|385802690|ref|YP_005839090.1| - 2.6e-12 46.1 0.1 6.3e-12 44.9 0.0 1.6 1 0 0 1 1 1 1 TrkA-C domain HTH_24 PF13412.1 gi|385802690|ref|YP_005839090.1| - 2.5e-11 42.7 0.0 4.2e-11 42.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|385802690|ref|YP_005839090.1| - 4.8e-08 32.4 0.0 8.8e-08 31.5 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|385802690|ref|YP_005839090.1| - 1.6e-06 27.7 0.0 3.7e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|385802690|ref|YP_005839090.1| - 2.1e-06 27.2 0.0 3.8e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|385802690|ref|YP_005839090.1| - 3.4e-06 26.6 0.0 2.8e-05 23.6 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_DeoR PF08220.7 gi|385802690|ref|YP_005839090.1| - 0.0014 18.1 0.0 0.0034 16.8 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_IclR PF09339.5 gi|385802690|ref|YP_005839090.1| - 0.0025 17.3 0.0 0.013 15.0 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|385802690|ref|YP_005839090.1| - 0.0027 17.7 0.0 0.008 16.2 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator HTH_27 PF13463.1 gi|385802690|ref|YP_005839090.1| - 0.0095 16.2 0.0 0.021 15.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|385802690|ref|YP_005839090.1| - 0.014 15.0 0.0 0.028 14.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|385802690|ref|YP_005839090.1| - 0.014 15.3 0.0 0.028 14.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|385802690|ref|YP_005839090.1| - 0.027 14.3 0.0 0.049 13.5 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|385802690|ref|YP_005839090.1| - 0.065 12.9 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain MarR PF01047.17 gi|385802690|ref|YP_005839090.1| - 0.07 12.8 0.0 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 MarR family DUF2250 PF10007.4 gi|385802690|ref|YP_005839090.1| - 0.077 12.9 0.0 0.23 11.3 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.1 gi|385802690|ref|YP_005839090.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_13 PF11972.3 gi|385802690|ref|YP_005839090.1| - 0.13 12.0 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain 4HBT PF03061.17 gi|385802693|ref|YP_005839093.1| - 1.2e-14 54.1 0.2 1.6e-14 53.7 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily zf-C2H2_4 PF13894.1 gi|385802694|ref|YP_005839094.1| - 0.0016 18.6 0.0 0.038 14.3 0.0 2.4 2 0 0 2 2 2 1 C2H2-type zinc finger zf-Di19 PF05605.7 gi|385802694|ref|YP_005839094.1| - 0.0021 18.1 0.2 0.0035 17.4 0.2 1.4 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zf-C2H2 PF00096.21 gi|385802694|ref|YP_005839094.1| - 0.0028 17.9 0.8 0.042 14.2 0.0 2.4 2 0 0 2 2 2 1 Zinc finger, C2H2 type zf-C2H2_2 PF12756.2 gi|385802694|ref|YP_005839094.1| - 0.0084 16.2 0.3 0.017 15.2 0.2 1.6 1 0 0 1 1 1 1 C2H2 type zinc-finger (2 copies) HypA PF01155.14 gi|385802694|ref|YP_005839094.1| - 0.021 14.4 0.2 0.044 13.4 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF3797 PF12677.2 gi|385802694|ref|YP_005839094.1| - 0.045 13.3 1.5 0.12 12.0 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) Elf1 PF05129.8 gi|385802694|ref|YP_005839094.1| - 0.054 13.1 1.1 3.1 7.5 0.1 2.3 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like HNH PF01844.18 gi|385802694|ref|YP_005839094.1| - 0.19 11.6 1.4 10 6.1 0.1 2.6 2 0 0 2 2 2 0 HNH endonuclease NOB1_Zn_bind PF08772.6 gi|385802694|ref|YP_005839094.1| - 0.2 11.4 1.2 0.37 10.6 0.1 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Zn-ribbon_8 PF09723.5 gi|385802694|ref|YP_005839094.1| - 0.73 9.8 3.8 38 4.3 2.6 2.4 1 1 0 1 1 1 0 Zinc ribbon domain DUF4215 PF13948.1 gi|385802694|ref|YP_005839094.1| - 0.97 9.6 4.4 6.3 7.0 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4215) DUF1610 PF07754.6 gi|385802694|ref|YP_005839094.1| - 8.5 6.5 6.8 23 5.1 1.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF3891 PF13030.1 gi|385802695|ref|YP_005839095.1| - 8.6e-68 228.1 0.0 1e-67 227.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3891) Thioredoxin PF00085.15 gi|385802696|ref|YP_005839096.1| - 1.9e-22 78.9 0.0 2.2e-22 78.7 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|385802696|ref|YP_005839096.1| - 1.4e-08 34.6 0.1 7.6e-05 22.7 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|385802696|ref|YP_005839096.1| - 8.9e-07 29.0 0.1 1.2e-05 25.4 0.1 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|385802696|ref|YP_005839096.1| - 1.4e-05 24.7 0.0 1.6e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|385802696|ref|YP_005839096.1| - 4.5e-05 23.0 0.0 4.9e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Redoxin PF08534.5 gi|385802696|ref|YP_005839096.1| - 5.1e-05 22.8 0.2 0.0021 17.5 0.0 2.0 1 1 1 2 2 2 2 Redoxin AhpC-TSA PF00578.16 gi|385802696|ref|YP_005839096.1| - 0.00037 20.1 0.3 0.2 11.3 0.0 2.0 1 1 1 2 2 2 2 AhpC/TSA family Glutaredoxin PF00462.19 gi|385802696|ref|YP_005839096.1| - 0.00045 20.1 0.1 0.00075 19.4 0.1 1.5 1 1 0 1 1 1 1 Glutaredoxin Thioredoxin_7 PF13899.1 gi|385802696|ref|YP_005839096.1| - 0.0029 17.6 0.7 0.0077 16.2 0.1 2.0 2 1 0 2 2 2 1 Thioredoxin-like DUF836 PF05768.9 gi|385802696|ref|YP_005839096.1| - 0.025 14.8 0.1 0.03 14.5 0.1 1.1 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) DSBA PF01323.15 gi|385802696|ref|YP_005839096.1| - 0.039 13.5 0.4 1.2 8.6 0.0 1.9 1 1 1 2 2 2 0 DSBA-like thioredoxin domain Thioredoxin_5 PF13743.1 gi|385802696|ref|YP_005839096.1| - 0.077 12.5 0.0 0.086 12.4 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin Phosducin PF02114.11 gi|385802696|ref|YP_005839096.1| - 0.093 11.4 0.0 0.1 11.3 0.0 1.0 1 0 0 1 1 1 0 Phosducin TraF PF13728.1 gi|385802696|ref|YP_005839096.1| - 0.12 11.8 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 F plasmid transfer operon protein Ribosomal_L40e PF01020.12 gi|385802697|ref|YP_005839097.1| - 4.5e-08 32.5 5.3 5.2e-08 32.3 3.7 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.2 gi|385802697|ref|YP_005839097.1| - 0.00072 19.3 1.6 0.00078 19.2 1.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-DHHC PF01529.15 gi|385802697|ref|YP_005839097.1| - 0.0011 18.4 1.7 0.0011 18.4 1.2 1.0 1 0 0 1 1 1 1 DHHC palmitoyltransferase zinc_ribbon_2 PF13240.1 gi|385802697|ref|YP_005839097.1| - 0.017 14.6 1.4 0.023 14.1 1.0 1.2 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|385802697|ref|YP_005839097.1| - 0.03 13.5 1.3 0.037 13.2 0.9 1.2 1 0 0 1 1 1 0 zinc-ribbon domain SelP_N PF04592.9 gi|385802697|ref|YP_005839097.1| - 0.092 12.1 0.5 0.096 12.0 0.4 1.0 1 0 0 1 1 1 0 Selenoprotein P, N terminal region zf-RanBP PF00641.13 gi|385802697|ref|YP_005839097.1| - 0.19 10.8 4.8 0.57 9.3 3.4 1.8 1 1 0 1 1 1 0 Zn-finger in Ran binding protein and others Toxin_5 PF05294.8 gi|385802697|ref|YP_005839097.1| - 0.2 11.8 2.5 0.28 11.4 1.7 1.2 1 0 0 1 1 1 0 Scorpion short toxin HypA PF01155.14 gi|385802697|ref|YP_005839097.1| - 0.26 10.9 1.5 0.27 10.9 1.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DNA_RNApol_7kD PF03604.8 gi|385802697|ref|YP_005839097.1| - 0.36 10.3 5.2 1 8.8 3.6 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit RNA_POL_M_15KD PF02150.11 gi|385802697|ref|YP_005839097.1| - 0.85 9.3 6.0 4.8 6.9 4.1 2.0 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit HTH_IclR PF09339.5 gi|385802700|ref|YP_005839100.1| - 6.5e-05 22.4 0.0 0.00017 21.0 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_34 PF13601.1 gi|385802700|ref|YP_005839100.1| - 9.5e-05 22.3 0.0 0.00019 21.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|385802700|ref|YP_005839100.1| - 0.00016 21.9 0.4 0.00038 20.7 0.1 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.17 gi|385802700|ref|YP_005839100.1| - 0.00028 20.5 0.1 0.0011 18.6 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|385802700|ref|YP_005839100.1| - 0.00036 20.2 0.1 0.0013 18.4 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|385802700|ref|YP_005839100.1| - 0.00036 20.1 0.0 0.00058 19.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|385802700|ref|YP_005839100.1| - 0.00086 18.9 0.0 0.0019 17.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|385802700|ref|YP_005839100.1| - 0.012 14.9 0.0 0.022 14.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|385802700|ref|YP_005839100.1| - 0.02 14.7 0.1 0.045 13.7 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|385802700|ref|YP_005839100.1| - 0.025 14.2 0.0 0.054 13.2 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|385802700|ref|YP_005839100.1| - 0.085 12.5 0.1 0.19 11.3 0.0 1.6 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.15 gi|385802700|ref|YP_005839100.1| - 0.11 12.5 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator DUF2276 PF10040.4 gi|385802701|ref|YP_005839101.1| - 1.1e-22 80.5 0.0 1.6e-22 79.9 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) DUF187 PF02638.10 gi|385802701|ref|YP_005839101.1| - 0.14 10.9 0.0 0.22 10.3 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase like GH101 DEAD PF00270.24 gi|385802705|ref|YP_005839105.1| - 5.4e-10 39.0 0.0 1.6e-09 37.5 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|385802705|ref|YP_005839105.1| - 5.8e-06 26.2 0.0 5.2e-05 23.1 0.0 2.3 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|385802705|ref|YP_005839105.1| - 0.022 14.6 0.1 0.065 13.1 0.0 1.8 1 0 0 1 1 1 0 Helicase conserved C-terminal domain Ead_Ea22 PF13935.1 gi|385802705|ref|YP_005839105.1| - 0.092 13.0 0.8 0.32 11.3 0.0 2.2 2 1 0 2 2 2 0 Ead/Ea22-like protein Cas_Cas4 PF01930.12 gi|385802706|ref|YP_005839106.1| - 9e-25 87.4 0.1 1e-24 87.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|385802706|ref|YP_005839106.1| - 2e-12 47.0 4.0 8.2e-09 35.2 0.0 2.0 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily DUF911 PF06023.7 gi|385802706|ref|YP_005839106.1| - 0.023 13.9 0.0 0.029 13.5 0.0 1.2 1 0 0 1 1 1 0 Archaeal protein of unknown function (DUF911) FANCI_S1 PF14675.1 gi|385802706|ref|YP_005839106.1| - 0.08 12.2 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 FANCI solenoid 1 DUF3302 PF11742.3 gi|385802706|ref|YP_005839106.1| - 0.12 12.1 0.0 6.4 6.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3302) Cas_Cas1 PF01867.11 gi|385802707|ref|YP_005839107.1| - 3.7e-72 242.7 0.0 4.6e-72 242.4 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 CRISPR_Cas2 PF09827.4 gi|385802708|ref|YP_005839108.1| - 2e-22 79.1 0.2 2.2e-22 78.9 0.1 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Ub-RnfH PF03658.9 gi|385802708|ref|YP_005839108.1| - 0.13 12.1 0.8 1.5 8.7 0.1 2.4 1 1 2 3 3 3 0 RnfH family Ubiquitin Phage_integrase PF00589.17 gi|385802709|ref|YP_005839109.1| - 3.2e-15 56.2 0.3 8.1e-15 54.9 0.2 1.6 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|385802709|ref|YP_005839109.1| - 3.1e-05 24.0 2.0 0.00079 19.5 0.3 2.1 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|385802709|ref|YP_005839109.1| - 9.4e-05 22.6 0.7 0.00027 21.2 0.5 1.8 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_2 PF12834.2 gi|385802709|ref|YP_005839109.1| - 0.014 15.7 0.1 6.8 7.1 0.0 3.1 2 2 1 3 3 3 0 Phage integrase, N-terminal DDE_Tnp_1 PF01609.16 gi|385802711|ref|YP_005839111.1| - 1.3e-15 57.5 1.7 2.6e-15 56.5 1.2 1.5 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|385802711|ref|YP_005839111.1| - 0.00012 22.1 1.1 0.0003 20.8 0.2 2.0 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|385802711|ref|YP_005839111.1| - 0.00031 20.5 0.0 0.00051 19.8 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|385802711|ref|YP_005839111.1| - 0.012 15.6 0.2 0.024 14.6 0.2 1.5 1 0 0 1 1 1 0 Transposase DDE domain Nif11 PF07862.6 gi|385802711|ref|YP_005839111.1| - 0.12 12.3 0.3 0.57 10.1 0.1 2.1 2 0 0 2 2 2 0 Nitrogen fixation protein of unknown function N6_N4_Mtase PF01555.13 gi|385802712|ref|YP_005839112.1| - 2.8e-22 79.3 0.0 7.9e-14 51.7 0.0 2.3 2 0 0 2 2 2 2 DNA methylase Methyltransf_26 PF13659.1 gi|385802712|ref|YP_005839112.1| - 3.3e-13 49.6 0.0 6.5e-12 45.5 0.0 2.4 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|385802712|ref|YP_005839112.1| - 5.5e-08 32.5 0.0 0.0013 18.3 0.0 2.3 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.10 gi|385802712|ref|YP_005839112.1| - 0.00017 21.1 0.0 0.00048 19.6 0.0 1.7 2 0 0 2 2 1 1 D12 class N6 adenine-specific DNA methyltransferase Cons_hypoth95 PF03602.10 gi|385802712|ref|YP_005839112.1| - 0.0034 16.8 0.0 0.99 8.7 0.0 2.5 2 0 0 2 2 2 1 Conserved hypothetical protein 95 MTS PF05175.9 gi|385802712|ref|YP_005839112.1| - 0.0037 16.6 0.0 3.2 7.1 0.0 3.3 2 1 0 2 2 2 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|385802712|ref|YP_005839112.1| - 0.0063 16.9 0.0 0.88 10.0 0.0 3.3 4 0 0 4 4 3 1 Methyltransferase domain zinc_ribbon_5 PF13719.1 gi|385802712|ref|YP_005839112.1| - 0.0078 15.7 0.3 0.0078 15.7 0.2 3.1 3 0 0 3 3 3 1 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|385802712|ref|YP_005839112.1| - 0.012 15.1 1.0 0.083 12.5 0.7 2.4 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS zinc_ribbon_4 PF13717.1 gi|385802712|ref|YP_005839112.1| - 0.02 14.5 0.2 0.02 14.5 0.2 3.1 3 0 0 3 3 3 0 zinc-ribbon domain Methyltransf_31 PF13847.1 gi|385802712|ref|YP_005839112.1| - 0.035 13.6 0.0 9.8 5.7 0.0 2.5 2 0 0 2 2 2 0 Methyltransferase domain Elf1 PF05129.8 gi|385802712|ref|YP_005839112.1| - 0.04 13.6 6.5 0.18 11.4 0.0 3.2 1 1 2 3 3 3 0 Transcription elongation factor Elf1 like C1_4 PF07975.7 gi|385802712|ref|YP_005839112.1| - 0.11 12.5 5.5 0.42 10.6 0.1 2.6 2 0 0 2 2 2 0 TFIIH C1-like domain Zn-ribbon_8 PF09723.5 gi|385802712|ref|YP_005839112.1| - 0.26 11.2 13.1 8.1 6.4 0.1 3.8 3 1 0 3 3 3 0 Zinc ribbon domain HypA PF01155.14 gi|385802712|ref|YP_005839112.1| - 0.75 9.4 9.8 5.4 6.7 2.6 2.7 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Lar_restr_allev PF14354.1 gi|385802712|ref|YP_005839112.1| - 0.9 9.8 14.3 12 6.2 4.8 3.7 2 2 0 2 2 2 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.7 gi|385802712|ref|YP_005839112.1| - 0.93 8.8 6.1 3.8 6.8 1.3 3.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-H2C2_2 PF13465.1 gi|385802712|ref|YP_005839112.1| - 1.6 9.1 5.6 13 6.3 0.0 3.4 2 1 1 3 3 3 0 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.2 gi|385802712|ref|YP_005839112.1| - 1.9 8.3 16.6 0.11 12.3 0.7 3.1 2 1 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_6 PF14599.1 gi|385802712|ref|YP_005839112.1| - 4.4 7.1 7.4 1.5 8.6 1.0 2.6 1 1 1 2 2 2 0 Zinc-ribbon DnaJ_CXXCXGXG PF00684.14 gi|385802712|ref|YP_005839112.1| - 4.7 7.3 10.0 3.7 7.6 4.3 2.3 1 1 1 2 2 2 0 DnaJ central domain zf-CHY PF05495.7 gi|385802712|ref|YP_005839112.1| - 6.5 7.0 8.3 84 3.4 0.8 2.2 1 1 1 2 2 2 0 CHY zinc finger Methyltransf_26 PF13659.1 gi|385802713|ref|YP_005839113.1| - 1e-14 54.5 0.0 2.2e-14 53.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|385802713|ref|YP_005839113.1| - 2.1e-11 43.4 0.0 3.4e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase Eco57I PF07669.6 gi|385802713|ref|YP_005839113.1| - 3e-07 30.7 0.0 5.8e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 Eco57I restriction-modification methylase UPF0020 PF01170.13 gi|385802713|ref|YP_005839113.1| - 4.3e-05 23.1 0.0 7.9e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.1 gi|385802713|ref|YP_005839113.1| - 0.00018 21.8 0.0 0.00098 19.4 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|385802713|ref|YP_005839113.1| - 0.00054 19.3 0.0 0.0009 18.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CusF_Ec PF11604.3 gi|385802713|ref|YP_005839113.1| - 0.015 15.1 0.0 0.036 13.9 0.0 1.6 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF Methyltransf_12 PF08242.7 gi|385802713|ref|YP_005839113.1| - 0.016 15.6 0.0 0.034 14.6 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain AhpC-TSA PF00578.16 gi|385802713|ref|YP_005839113.1| - 0.054 13.1 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 AhpC/TSA family Methyltransf_15 PF09445.5 gi|385802713|ref|YP_005839113.1| - 0.15 11.6 0.0 0.27 10.7 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase TBP PF00352.16 gi|385802716|ref|YP_005839116.1| - 9.7e-40 133.8 0.0 2.8e-21 74.6 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|385802716|ref|YP_005839116.1| - 0.0019 18.2 0.0 0.11 12.5 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF3378) DUF2891 PF11199.3 gi|385802718|ref|YP_005839118.1| - 0.044 12.3 0.2 0.06 11.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2891) HEAT_2 PF13646.1 gi|385802719|ref|YP_005839119.1| - 5e-24 84.3 15.3 1.5e-14 54.0 1.8 4.4 1 1 3 5 5 5 5 HEAT repeats Adaptin_N PF01602.15 gi|385802719|ref|YP_005839119.1| - 2.2e-17 62.5 0.1 2.9e-07 29.1 0.0 2.9 1 1 2 3 3 3 2 Adaptin N terminal region HEAT PF02985.17 gi|385802719|ref|YP_005839119.1| - 9.8e-15 53.2 6.8 0.012 15.6 0.0 7.3 6 1 0 7 7 7 3 HEAT repeat Cnd1 PF12717.2 gi|385802719|ref|YP_005839119.1| - 2e-14 53.8 0.0 9.7e-06 25.5 0.0 3.8 2 2 1 3 3 3 3 non-SMC mitotic condensation complex subunit 1 HEAT_EZ PF13513.1 gi|385802719|ref|YP_005839119.1| - 1.2e-12 47.8 16.7 1.8e-05 25.0 0.0 6.1 2 1 5 7 7 7 4 HEAT-like repeat Arm PF00514.18 gi|385802719|ref|YP_005839119.1| - 5.4e-09 35.5 3.9 0.047 13.5 0.0 6.5 6 0 0 6 6 6 1 Armadillo/beta-catenin-like repeat HEAT_PBS PF03130.11 gi|385802719|ref|YP_005839119.1| - 2.5e-06 27.4 4.3 11 6.7 0.0 6.1 6 0 0 6 6 6 0 PBS lyase HEAT-like repeat Vac14_Fab1_bd PF12755.2 gi|385802719|ref|YP_005839119.1| - 9e-05 22.7 0.3 0.0062 16.9 0.0 3.4 3 1 1 4 4 4 1 Vacuolar 14 Fab1-binding region DUF2435 PF10363.4 gi|385802719|ref|YP_005839119.1| - 0.00011 21.9 0.3 0.13 12.1 0.0 3.9 2 2 2 4 4 4 1 Protein of unknown function (DUF2435) DUF1546 PF07571.8 gi|385802719|ref|YP_005839119.1| - 0.00018 21.5 0.0 0.18 11.9 0.0 3.3 2 1 1 3 3 3 1 Protein of unknown function (DUF1546) TPR_6 PF13174.1 gi|385802719|ref|YP_005839119.1| - 0.00031 20.9 0.3 22 5.7 0.0 5.3 6 0 0 6 6 5 0 Tetratricopeptide repeat NUC130_3NT PF08158.7 gi|385802719|ref|YP_005839119.1| - 0.0018 18.5 0.0 13 6.1 0.0 4.2 4 0 0 4 4 4 0 NUC130/3NT domain Xpo1 PF08389.7 gi|385802719|ref|YP_005839119.1| - 0.029 14.2 0.0 1.5 8.7 0.0 2.4 2 0 0 2 2 2 0 Exportin 1-like protein RasGEF_N_2 PF14663.1 gi|385802719|ref|YP_005839119.1| - 0.16 11.9 0.1 6.2 6.7 0.0 3.2 2 2 1 4 4 4 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain Nipped-B_C PF12830.2 gi|385802719|ref|YP_005839119.1| - 0.18 11.4 0.2 15 5.1 0.0 3.1 3 2 0 3 3 3 0 Sister chromatid cohesion C-terminus DUF91 PF01939.11 gi|385802720|ref|YP_005839120.1| - 0.0004 19.6 0.1 0.0007 18.8 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF91 GTP_EFTU PF00009.22 gi|385802721|ref|YP_005839121.1| - 4.9e-42 143.5 0.2 7e-42 142.9 0.1 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|385802721|ref|YP_005839121.1| - 6.5e-27 93.4 0.0 1.5e-26 92.2 0.0 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|385802721|ref|YP_005839121.1| - 5.8e-08 32.7 1.4 2.2e-07 30.8 1.0 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|385802721|ref|YP_005839121.1| - 0.00077 19.3 0.0 0.0014 18.5 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|385802721|ref|YP_005839121.1| - 0.0019 17.7 1.0 0.098 12.1 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Miro PF08477.8 gi|385802721|ref|YP_005839121.1| - 0.031 14.7 0.0 0.096 13.1 0.0 1.9 1 1 0 1 1 1 0 Miro-like protein FeoB_N PF02421.13 gi|385802721|ref|YP_005839121.1| - 0.031 13.5 1.3 4.5 6.5 0.0 2.5 2 1 0 2 2 2 0 Ferrous iron transport protein B SRPRB PF09439.5 gi|385802721|ref|YP_005839121.1| - 0.13 11.4 0.0 9 5.4 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit DUF188 PF02639.9 gi|385802722|ref|YP_005839122.1| - 0.0014 18.0 0.5 0.9 8.9 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized BCR, YaiI/YqxD family COG1671 Fcf1 PF04900.7 gi|385802722|ref|YP_005839122.1| - 0.002 18.1 0.0 2.3 8.3 0.0 2.2 2 0 0 2 2 2 2 Fcf1 CFIA_Pcf11 PF11526.3 gi|385802722|ref|YP_005839122.1| - 1.8 8.7 4.2 19 5.4 2.9 2.1 1 1 0 1 1 1 0 Subunit of cleavage factor IA Pcf11 SHS2_Rpb7-N PF03876.12 gi|385802723|ref|YP_005839123.1| - 2.7e-15 56.2 0.0 4.2e-15 55.6 0.0 1.3 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|385802723|ref|YP_005839123.1| - 1.5e-13 50.6 0.5 2.5e-13 49.8 0.3 1.4 1 0 0 1 1 1 1 S1 RNA binding domain S1_2 PF13509.1 gi|385802723|ref|YP_005839123.1| - 0.046 13.6 0.0 1.6 8.7 0.0 2.4 1 1 0 1 1 1 0 S1 domain Spt4 PF06093.8 gi|385802724|ref|YP_005839124.1| - 3.8e-14 52.3 0.2 4.4e-14 52.1 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.2 gi|385802724|ref|YP_005839124.1| - 0.00042 20.0 1.3 0.00052 19.7 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RanBP PF00641.13 gi|385802724|ref|YP_005839124.1| - 0.0018 17.3 3.3 0.0025 16.8 2.3 1.3 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zf-ribbon_3 PF13248.1 gi|385802724|ref|YP_005839124.1| - 0.029 13.5 2.1 0.075 12.2 1.6 1.5 1 1 1 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|385802724|ref|YP_005839124.1| - 0.052 13.2 0.8 0.062 12.9 0.5 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family NOB1_Zn_bind PF08772.6 gi|385802724|ref|YP_005839124.1| - 0.092 12.5 0.1 0.097 12.5 0.1 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like ADH_N PF08240.7 gi|385802724|ref|YP_005839124.1| - 0.11 12.2 0.3 0.12 12.1 0.2 1.2 1 0 0 1 1 1 0 Alcohol dehydrogenase GroES-like domain TF_Zn_Ribbon PF08271.7 gi|385802724|ref|YP_005839124.1| - 0.12 11.7 0.4 0.36 10.1 0.0 1.9 2 0 0 2 2 2 0 TFIIB zinc-binding NCD3G PF07562.9 gi|385802724|ref|YP_005839124.1| - 0.13 11.9 2.8 0.19 11.4 1.9 1.2 1 0 0 1 1 1 0 Nine Cysteines Domain of family 3 GPCR DUF2810 PF10928.3 gi|385802724|ref|YP_005839124.1| - 0.14 11.9 0.0 0.17 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2810) zinc_ribbon_2 PF13240.1 gi|385802724|ref|YP_005839124.1| - 0.17 11.4 3.6 0.25 10.8 2.5 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|385802724|ref|YP_005839124.1| - 0.22 11.5 2.2 6.1 6.9 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DNA_RNApol_7kD PF03604.8 gi|385802724|ref|YP_005839124.1| - 0.4 10.1 3.6 5 6.6 2.7 2.1 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Nudix_N_2 PF14803.1 gi|385802724|ref|YP_005839124.1| - 0.44 10.2 5.3 1.6 8.4 0.7 2.2 2 0 0 2 2 2 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.6 gi|385802724|ref|YP_005839124.1| - 0.96 9.1 5.9 4.4 7.0 0.6 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.11 gi|385802724|ref|YP_005839124.1| - 1.3 8.7 4.9 1.1 8.9 0.2 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit DUF359 PF04019.7 gi|385802725|ref|YP_005839125.1| - 7.4e-41 138.3 0.3 9.1e-41 138.0 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) RHH_1 PF01402.16 gi|385802726|ref|YP_005839126.1| - 0.0021 17.8 4.5 0.0036 17.1 0.8 2.5 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|385802726|ref|YP_005839126.1| - 0.0092 15.6 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix domain Ribosomal_S24e PF01282.14 gi|385802727|ref|YP_005839127.1| - 3.3e-29 100.5 0.2 4e-29 100.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Phage_holin_T PF11031.3 gi|385802727|ref|YP_005839127.1| - 0.051 12.7 0.0 0.06 12.4 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage T holin DUF1762 PF08574.5 gi|385802727|ref|YP_005839127.1| - 0.078 13.4 2.2 0.14 12.5 1.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1762) hNIFK_binding PF12196.3 gi|385802727|ref|YP_005839127.1| - 0.27 10.6 2.0 0.51 9.7 0.1 2.1 2 0 0 2 2 2 0 FHA Ki67 binding domain of hNIFK Peptidase_M22 PF00814.20 gi|385802728|ref|YP_005839128.1| - 2.1e-72 243.8 0.0 3e-72 243.3 0.0 1.2 1 0 0 1 1 1 1 Glycoprotease family APH PF01636.18 gi|385802728|ref|YP_005839128.1| - 0.00028 20.7 7.1 0.027 14.1 0.4 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|385802728|ref|YP_005839128.1| - 0.0029 16.6 0.1 0.017 14.2 0.0 1.9 2 0 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family RIO1 PF01163.17 gi|385802728|ref|YP_005839128.1| - 0.036 13.4 0.0 0.08 12.2 0.0 1.5 1 1 0 1 1 1 0 RIO1 family Ham1p_like PF01725.11 gi|385802730|ref|YP_005839130.1| - 7.8e-41 139.5 0.0 1.1e-40 139.1 0.0 1.2 1 0 0 1 1 1 1 Ham1 family PIN_3 PF13470.1 gi|385802731|ref|YP_005839131.1| - 0.0011 19.6 0.7 0.0046 17.6 0.5 2.0 1 1 0 1 1 1 1 PIN domain PEPCK_ATP PF01293.15 gi|385802731|ref|YP_005839131.1| - 0.0043 15.6 0.0 0.0063 15.0 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase Pex14_N PF04695.8 gi|385802731|ref|YP_005839131.1| - 0.082 12.9 0.2 0.12 12.3 0.1 1.2 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region MCPVI PF02993.9 gi|385802731|ref|YP_005839131.1| - 0.097 12.8 0.2 0.15 12.2 0.1 1.2 1 0 0 1 1 1 0 Minor capsid protein VI TrkA_N PF02254.13 gi|385802732|ref|YP_005839132.1| - 4.5e-24 84.6 0.2 7e-24 84.0 0.2 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|385802732|ref|YP_005839132.1| - 4.8e-10 38.8 0.2 1.2e-09 37.6 0.1 1.6 1 0 0 1 1 1 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.9 gi|385802732|ref|YP_005839132.1| - 1.4e-05 24.5 0.1 4.7e-05 22.8 0.1 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XdhC_C PF13478.1 gi|385802732|ref|YP_005839132.1| - 0.00022 21.5 0.0 0.00038 20.7 0.0 1.6 1 1 0 1 1 1 1 XdhC Rossmann domain 3HCDH_N PF02737.13 gi|385802732|ref|YP_005839132.1| - 0.00034 20.2 0.1 0.00061 19.4 0.1 1.5 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|385802732|ref|YP_005839132.1| - 0.00047 19.3 0.0 0.00075 18.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|385802732|ref|YP_005839132.1| - 0.00096 19.0 0.3 0.0017 18.1 0.2 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.7 gi|385802732|ref|YP_005839132.1| - 0.0019 17.6 0.1 0.003 16.9 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_7 PF13241.1 gi|385802732|ref|YP_005839132.1| - 0.002 18.3 0.1 0.003 17.7 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|385802732|ref|YP_005839132.1| - 0.0028 17.6 0.2 0.0033 17.4 0.1 1.2 1 0 0 1 1 1 1 NADH(P)-binding Saccharop_dh PF03435.13 gi|385802732|ref|YP_005839132.1| - 0.0038 16.2 0.1 0.0046 15.9 0.1 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase AlaDh_PNT_C PF01262.16 gi|385802732|ref|YP_005839132.1| - 0.0047 16.4 0.1 0.0073 15.8 0.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.14 gi|385802732|ref|YP_005839132.1| - 0.0059 15.6 0.0 0.0074 15.3 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_2 PF03446.10 gi|385802732|ref|YP_005839132.1| - 0.0081 16.0 0.1 0.018 14.9 0.0 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|385802732|ref|YP_005839132.1| - 0.092 12.1 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Gmad2 PF10648.4 gi|385802733|ref|YP_005839133.1| - 0.00047 20.2 0.3 0.00092 19.3 0.2 1.5 1 0 0 1 1 1 1 Immunoglobulin-like domain of bacterial spore germination DUF2201 PF09967.4 gi|385802733|ref|YP_005839133.1| - 0.0038 17.2 0.5 0.0038 17.2 0.3 1.6 2 0 0 2 2 2 1 VWA-like domain (DUF2201) DUF2077 PF09850.4 gi|385802733|ref|YP_005839133.1| - 0.066 12.6 0.0 0.99 8.7 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2077) ALS_ss_C PF10369.4 gi|385802733|ref|YP_005839133.1| - 0.15 11.8 1.1 5.1 6.8 0.2 2.4 2 0 0 2 2 2 0 Small subunit of acetolactate synthase TALPID3 PF15324.1 gi|385802733|ref|YP_005839133.1| - 4 4.6 11.3 5.2 4.2 7.9 1.1 1 0 0 1 1 1 0 Hedgehog signalling target ABC2_membrane_5 PF13346.1 gi|385802734|ref|YP_005839134.1| - 0.14 11.4 8.1 0.14 11.4 5.6 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2721 PF11026.3 gi|385802734|ref|YP_005839134.1| - 0.17 11.5 5.0 0.19 11.3 3.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) Halogen_Hydrol PF10112.4 gi|385802734|ref|YP_005839134.1| - 0.29 10.5 4.0 0.32 10.3 2.8 1.1 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein IncA PF04156.9 gi|385802734|ref|YP_005839134.1| - 4.3 6.8 8.3 4.9 6.6 5.8 1.0 1 0 0 1 1 1 0 IncA protein PALP PF00291.20 gi|385802735|ref|YP_005839135.1| - 2.3e-78 263.5 9.3 2.8e-78 263.2 6.5 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.1 gi|385802735|ref|YP_005839135.1| - 3.1e-05 24.2 0.2 0.00046 20.4 0.0 2.6 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|385802735|ref|YP_005839135.1| - 0.0008 18.8 0.1 0.0008 18.8 0.1 2.6 3 0 0 3 3 3 1 ACT domain Citrate_synt PF00285.16 gi|385802736|ref|YP_005839136.1| - 1.2e-128 428.7 0.1 1.4e-128 428.6 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase SpoIIE PF07228.7 gi|385802736|ref|YP_005839136.1| - 0.0098 15.6 0.9 0.02 14.6 0.0 1.9 2 1 0 2 2 2 1 Stage II sporulation protein E (SpoIIE) TrkA_C PF02080.16 gi|385802737|ref|YP_005839137.1| - 2e-31 107.4 0.3 2.4e-17 62.2 0.0 2.6 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.14 gi|385802737|ref|YP_005839137.1| - 7.9e-13 48.6 6.6 2.4e-06 27.9 1.7 2.5 2 0 0 2 2 2 2 PhoU domain bZIP_2 PF07716.10 gi|385802737|ref|YP_005839137.1| - 0.095 12.5 0.4 5.6 6.8 0.0 2.4 2 0 0 2 2 2 0 Basic region leucine zipper Dicistro_VP4 PF11492.3 gi|385802737|ref|YP_005839137.1| - 0.34 10.9 3.1 0.74 9.8 0.2 2.4 2 0 0 2 2 2 0 Cricket paralysis virus, VP4 YrvL PF14184.1 gi|385802738|ref|YP_005839138.1| - 0.068 12.9 2.2 0.098 12.4 1.5 1.2 1 0 0 1 1 1 0 Regulatory protein YrvL Cation_ATPase_C PF00689.16 gi|385802738|ref|YP_005839138.1| - 0.073 12.5 1.8 0.089 12.3 1.3 1.2 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus Claudin_3 PF06653.6 gi|385802738|ref|YP_005839138.1| - 0.64 9.7 3.8 1.4 8.6 2.6 1.5 1 1 0 1 1 1 0 Tight junction protein, Claudin-like AstE_AspA PF04952.9 gi|385802739|ref|YP_005839139.1| - 4.9e-51 173.3 0.0 5.6e-51 173.1 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family TMP_2 PF06791.8 gi|385802739|ref|YP_005839139.1| - 0.042 13.4 0.0 0.062 12.9 0.0 1.2 1 0 0 1 1 1 0 Prophage tail length tape measure protein PCMT PF01135.14 gi|385802741|ref|YP_005839141.1| - 7e-31 107.3 0.3 1.6e-25 89.9 0.1 2.1 2 0 0 2 2 2 2 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|385802741|ref|YP_005839141.1| - 3.4e-07 29.7 0.1 6.1e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|385802741|ref|YP_005839141.1| - 4.9e-07 30.3 0.0 8.1e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385802741|ref|YP_005839141.1| - 3.6e-06 26.6 0.0 4.9e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|385802741|ref|YP_005839141.1| - 1.1e-05 25.4 0.1 1.7e-05 24.8 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|385802741|ref|YP_005839141.1| - 0.0012 18.4 0.0 0.0017 17.9 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_11 PF08241.7 gi|385802741|ref|YP_005839141.1| - 0.0018 18.7 0.0 0.0035 17.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|385802741|ref|YP_005839141.1| - 0.0018 18.6 0.0 0.0043 17.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.1 gi|385802741|ref|YP_005839141.1| - 0.004 16.8 0.1 0.0068 16.0 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|385802741|ref|YP_005839141.1| - 0.048 12.7 0.2 0.079 12.0 0.2 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF3897 PF13036.1 gi|385802741|ref|YP_005839141.1| - 0.11 12.1 0.1 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3897) VARLMGL PF14383.1 gi|385802741|ref|YP_005839141.1| - 0.11 11.6 0.0 0.22 10.7 0.0 1.5 1 0 0 1 1 1 0 DUF761-associated sequence motif RrnaAD PF00398.15 gi|385802741|ref|YP_005839141.1| - 0.14 11.1 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase UPF0020 PF01170.13 gi|385802741|ref|YP_005839141.1| - 0.15 11.6 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 DUF2387 PF09526.5 gi|385802742|ref|YP_005839142.1| - 0.00031 20.6 0.6 0.00058 19.7 0.4 1.4 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) Lar_restr_allev PF14354.1 gi|385802742|ref|YP_005839142.1| - 0.11 12.8 0.7 0.25 11.6 0.5 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_5 PF13719.1 gi|385802742|ref|YP_005839142.1| - 0.15 11.6 6.5 0.64 9.6 4.1 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|385802742|ref|YP_005839142.1| - 0.35 10.5 6.8 2.4 7.9 4.3 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|385802742|ref|YP_005839142.1| - 0.65 9.2 3.9 0.79 9.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Peptidase_M29 PF02073.10 gi|385802743|ref|YP_005839143.1| - 3e-19 69.0 0.3 1.2e-16 60.5 0.0 2.3 2 1 0 2 2 2 2 Thermophilic metalloprotease (M29) FAM24 PF15193.1 gi|385802743|ref|YP_005839143.1| - 0.059 13.5 0.6 0.11 12.6 0.1 1.8 2 0 0 2 2 2 0 FAM24 family Gp_dh_C PF02800.15 gi|385802744|ref|YP_005839144.1| - 1.8e-18 66.4 0.0 2.9e-18 65.8 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|385802744|ref|YP_005839144.1| - 6.7e-17 61.8 0.5 1.6e-15 57.3 0.4 2.4 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|385802744|ref|YP_005839144.1| - 5.9e-10 39.1 0.4 2.8e-09 36.9 0.1 2.2 1 1 1 2 2 2 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|385802744|ref|YP_005839144.1| - 0.00049 20.4 0.1 0.0013 19.1 0.0 1.7 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|385802744|ref|YP_005839144.1| - 0.0025 16.9 0.3 0.0092 15.1 0.0 2.1 2 1 1 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|385802744|ref|YP_005839144.1| - 0.0061 17.0 0.6 0.015 15.8 0.0 1.9 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Metallophos_2 PF12850.2 gi|385802745|ref|YP_005839145.1| - 4.3e-15 55.8 0.2 5e-15 55.6 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|385802745|ref|YP_005839145.1| - 8.7e-07 28.5 0.3 2.4e-06 27.0 0.2 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase OATP PF03137.15 gi|385802746|ref|YP_005839146.1| - 0.021 12.8 0.0 0.021 12.8 0.0 1.0 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family DUF4418 PF14387.1 gi|385802746|ref|YP_005839146.1| - 0.16 11.6 1.7 0.21 11.3 1.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) Peptidase_M24 PF00557.19 gi|385802747|ref|YP_005839147.1| - 3.8e-16 59.2 2.4 6.9e-16 58.4 0.3 2.3 2 1 1 3 3 3 1 Metallopeptidase family M24 DZR PF12773.2 gi|385802749|ref|YP_005839149.1| - 0.0023 17.6 0.3 0.0024 17.6 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|385802749|ref|YP_005839149.1| - 0.0054 16.1 0.5 0.0094 15.4 0.4 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|385802749|ref|YP_005839149.1| - 0.0081 15.3 2.1 0.0081 15.3 1.4 1.5 2 0 0 2 2 2 1 zinc-ribbon domain zf-IS66 PF13005.2 gi|385802749|ref|YP_005839149.1| - 0.042 13.8 0.8 0.065 13.2 0.6 1.3 1 0 0 1 1 1 0 zinc-finger binding domain of transposase IS66 Rubredoxin PF00301.15 gi|385802749|ref|YP_005839149.1| - 0.05 13.4 0.7 2.4 8.1 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin UPF0547 PF10571.4 gi|385802749|ref|YP_005839149.1| - 0.056 13.1 1.7 0.11 12.2 1.2 1.5 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 RecR PF02132.10 gi|385802749|ref|YP_005839149.1| - 0.069 12.6 0.8 0.1 12.0 0.6 1.2 1 0 0 1 1 1 0 RecR protein OrfB_Zn_ribbon PF07282.6 gi|385802749|ref|YP_005839149.1| - 0.15 11.7 2.2 0.28 10.8 1.5 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Cys_rich_CPCC PF14206.1 gi|385802749|ref|YP_005839149.1| - 0.15 11.6 2.1 0.25 10.9 1.5 1.4 1 0 0 1 1 1 0 Cysteine-rich CPCC zf-NADH-PPase PF09297.6 gi|385802749|ref|YP_005839149.1| - 0.18 11.3 0.4 0.18 11.3 0.3 2.2 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|385802749|ref|YP_005839149.1| - 1.1 8.7 3.9 2.6 7.5 0.1 2.4 1 1 1 2 2 2 0 A2L zinc ribbon domain Trypan_PARP PF05887.6 gi|385802750|ref|YP_005839150.1| - 0.012 15.4 0.1 0.017 14.9 0.1 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) Peptidase_M32 PF02074.10 gi|385802751|ref|YP_005839151.1| - 2.5e-150 501.3 0.1 2.9e-150 501.1 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase DUF3291 PF11695.3 gi|385802751|ref|YP_005839151.1| - 0.067 12.6 0.0 0.13 11.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3291) Peptidase_M20 PF01546.23 gi|385802752|ref|YP_005839152.1| - 6.5e-27 94.2 0.8 8.9e-27 93.8 0.6 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|385802752|ref|YP_005839152.1| - 4.2e-15 55.4 0.2 9.9e-15 54.2 0.1 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain DUF1108 PF06531.6 gi|385802752|ref|YP_005839152.1| - 0.096 12.8 0.0 0.25 11.5 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1108) T2SE PF00437.15 gi|385802753|ref|YP_005839153.1| - 1.7e-13 50.1 0.0 3.5e-13 49.0 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|385802753|ref|YP_005839153.1| - 1.6e-06 27.6 0.5 6.4e-06 25.7 0.0 2.4 2 0 0 2 2 2 1 KH domain AAA_17 PF13207.1 gi|385802753|ref|YP_005839153.1| - 0.00013 22.7 0.0 0.00051 20.8 0.0 2.1 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|385802753|ref|YP_005839153.1| - 0.00081 18.8 0.0 0.0022 17.4 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|385802753|ref|YP_005839153.1| - 0.0011 18.6 0.3 0.0091 15.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|385802753|ref|YP_005839153.1| - 0.0012 18.7 0.0 0.0055 16.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain KH_2 PF07650.12 gi|385802753|ref|YP_005839153.1| - 0.0012 18.3 1.3 0.0031 17.0 0.9 1.7 1 0 0 1 1 1 1 KH domain Zeta_toxin PF06414.7 gi|385802753|ref|YP_005839153.1| - 0.0018 17.4 0.0 0.0035 16.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin NTPase_1 PF03266.10 gi|385802753|ref|YP_005839153.1| - 0.0022 17.7 0.0 0.0055 16.4 0.0 1.7 1 0 0 1 1 1 1 NTPase AAA_19 PF13245.1 gi|385802753|ref|YP_005839153.1| - 0.0023 17.6 0.0 0.0056 16.3 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|385802753|ref|YP_005839153.1| - 0.0039 17.1 0.0 0.0088 16.0 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain Thymidylate_kin PF02223.12 gi|385802753|ref|YP_005839153.1| - 0.0043 16.4 0.0 0.014 14.8 0.0 1.7 1 1 1 2 2 2 1 Thymidylate kinase KH_3 PF13014.1 gi|385802753|ref|YP_005839153.1| - 0.0073 15.9 0.2 0.025 14.2 0.2 2.0 1 0 0 1 1 1 1 KH domain DUF2620 PF10941.3 gi|385802753|ref|YP_005839153.1| - 0.008 16.2 0.1 0.023 14.7 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF2620 PIN_4 PF13638.1 gi|385802753|ref|YP_005839153.1| - 0.0095 16.0 0.1 0.035 14.1 0.1 2.0 1 1 0 1 1 1 1 PIN domain AAA_18 PF13238.1 gi|385802753|ref|YP_005839153.1| - 0.011 15.9 0.0 0.027 14.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|385802753|ref|YP_005839153.1| - 0.012 14.8 0.0 0.026 13.7 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_22 PF13401.1 gi|385802753|ref|YP_005839153.1| - 0.013 15.6 0.0 0.037 14.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|385802753|ref|YP_005839153.1| - 0.025 14.3 0.0 0.051 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|385802753|ref|YP_005839153.1| - 0.032 14.4 0.0 0.068 13.3 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.12 gi|385802753|ref|YP_005839153.1| - 0.049 13.1 0.0 0.084 12.4 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Sigma54_activ_2 PF14532.1 gi|385802753|ref|YP_005839153.1| - 0.052 13.6 0.0 0.14 12.1 0.0 1.7 2 0 0 2 2 1 0 Sigma-54 interaction domain AAA_14 PF13173.1 gi|385802753|ref|YP_005839153.1| - 0.068 13.0 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|385802753|ref|YP_005839153.1| - 0.099 11.7 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|385802753|ref|YP_005839153.1| - 0.1 12.2 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain IstB_IS21 PF01695.12 gi|385802753|ref|YP_005839153.1| - 0.13 11.6 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|385802753|ref|YP_005839153.1| - 0.14 12.2 0.0 0.32 11.2 0.0 1.6 1 0 0 1 1 1 0 RNA helicase TrmB PF01978.14 gi|385802754|ref|YP_005839154.1| - 0.012 15.2 0.1 0.018 14.7 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2540 PF10802.3 gi|385802754|ref|YP_005839154.1| - 0.02 14.5 0.1 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2540) HTH_27 PF13463.1 gi|385802754|ref|YP_005839154.1| - 0.022 15.0 0.0 0.033 14.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|385802754|ref|YP_005839154.1| - 0.031 13.9 0.0 0.048 13.3 0.0 1.2 1 0 0 1 1 1 0 MarR family TFIIE_alpha PF02002.12 gi|385802754|ref|YP_005839154.1| - 0.072 12.5 0.0 0.097 12.1 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit GntR PF00392.16 gi|385802754|ref|YP_005839154.1| - 0.081 12.3 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family AF-4 PF05110.8 gi|385802754|ref|YP_005839154.1| - 0.096 10.5 3.4 0.097 10.5 2.3 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein DUF1634 PF07843.6 gi|385802755|ref|YP_005839155.1| - 0.00012 21.6 3.4 0.00016 21.2 2.3 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1634) ATP-synt_C PF00137.16 gi|385802755|ref|YP_005839155.1| - 0.12 12.3 5.3 0.21 11.5 3.7 1.4 1 0 0 1 1 1 0 ATP synthase subunit C ABC_tran PF00005.22 gi|385802756|ref|YP_005839156.1| - 9e-37 126.4 0.0 9.3e-17 61.6 0.1 3.0 2 1 0 2 2 2 2 ABC transporter SMC_N PF02463.14 gi|385802756|ref|YP_005839156.1| - 5.8e-15 55.1 2.1 0.00013 21.2 0.0 4.2 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|385802756|ref|YP_005839156.1| - 8.2e-15 55.5 0.5 0.0055 16.7 0.0 4.3 2 2 1 4 4 4 3 AAA domain RLI PF04068.10 gi|385802756|ref|YP_005839156.1| - 1.7e-12 46.6 1.1 3.3e-12 45.7 0.8 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_17 PF13207.1 gi|385802756|ref|YP_005839156.1| - 6e-08 33.5 0.1 0.019 15.7 0.0 3.0 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|385802756|ref|YP_005839156.1| - 2.8e-07 30.6 1.7 0.016 15.1 0.1 2.8 2 2 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|385802756|ref|YP_005839156.1| - 3.7e-07 30.3 0.4 0.0058 16.7 0.0 3.1 3 1 0 3 3 2 2 AAA domain AAA_23 PF13476.1 gi|385802756|ref|YP_005839156.1| - 3.7e-07 30.6 0.0 0.021 15.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA PF00004.24 gi|385802756|ref|YP_005839156.1| - 7.3e-06 26.2 0.0 0.032 14.4 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|385802756|ref|YP_005839156.1| - 2e-05 24.0 0.7 0.033 13.6 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain RNA_helicase PF00910.17 gi|385802756|ref|YP_005839156.1| - 2.1e-05 24.6 0.0 0.2 11.8 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_25 PF13481.1 gi|385802756|ref|YP_005839156.1| - 2.5e-05 23.7 4.5 0.13 11.6 0.0 3.7 4 0 0 4 4 4 2 AAA domain AAA_14 PF13173.1 gi|385802756|ref|YP_005839156.1| - 7.3e-05 22.6 0.0 0.33 10.8 0.0 3.5 3 1 0 3 3 3 1 AAA domain NACHT PF05729.7 gi|385802756|ref|YP_005839156.1| - 9.2e-05 22.1 0.0 0.2 11.3 0.0 2.5 2 0 0 2 2 2 2 NACHT domain AAA_18 PF13238.1 gi|385802756|ref|YP_005839156.1| - 0.00015 22.0 0.0 0.37 11.0 0.0 2.8 2 1 0 2 2 2 1 AAA domain Fer4 PF00037.22 gi|385802756|ref|YP_005839156.1| - 0.00025 20.4 1.3 0.00025 20.4 0.9 3.0 3 0 0 3 3 3 1 4Fe-4S binding domain AAA_33 PF13671.1 gi|385802756|ref|YP_005839156.1| - 0.00084 19.2 0.1 1.6 8.6 0.0 3.0 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|385802756|ref|YP_005839156.1| - 0.00097 18.3 0.0 0.91 8.6 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_24 PF13479.1 gi|385802756|ref|YP_005839156.1| - 0.0013 18.3 0.1 1.2 8.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain MobB PF03205.9 gi|385802756|ref|YP_005839156.1| - 0.0017 18.0 0.9 1.6 8.4 0.0 3.0 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|385802756|ref|YP_005839156.1| - 0.0034 16.8 0.3 2.3 7.5 0.0 3.3 3 0 0 3 3 3 1 AAA-like domain SbcCD_C PF13558.1 gi|385802756|ref|YP_005839156.1| - 0.0039 17.0 0.1 1 9.3 0.0 2.9 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.9 gi|385802756|ref|YP_005839156.1| - 0.0053 16.4 0.0 1.4 8.6 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Fer4_6 PF12837.2 gi|385802756|ref|YP_005839156.1| - 0.0061 16.3 14.7 0.016 15.0 1.2 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_13 PF13166.1 gi|385802756|ref|YP_005839156.1| - 0.0067 14.9 0.0 0.54 8.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|385802756|ref|YP_005839156.1| - 0.0075 15.3 0.0 0.14 11.2 0.0 2.5 2 1 1 3 3 3 1 AAA ATPase domain NTPase_1 PF03266.10 gi|385802756|ref|YP_005839156.1| - 0.0089 15.7 1.5 3.1 7.4 0.1 2.8 3 0 0 3 3 2 0 NTPase AAA_28 PF13521.1 gi|385802756|ref|YP_005839156.1| - 0.011 15.7 2.7 0.17 11.8 0.0 3.1 3 0 0 3 3 2 0 AAA domain Rad17 PF03215.10 gi|385802756|ref|YP_005839156.1| - 0.011 14.4 0.1 0.21 10.2 0.0 2.5 2 1 1 3 3 3 0 Rad17 cell cycle checkpoint protein NB-ARC PF00931.17 gi|385802756|ref|YP_005839156.1| - 0.015 14.1 1.5 0.3 9.8 0.1 2.3 2 0 0 2 2 2 0 NB-ARC domain Arch_ATPase PF01637.13 gi|385802756|ref|YP_005839156.1| - 0.026 14.2 0.0 5 6.7 0.0 2.3 2 0 0 2 2 2 0 Archaeal ATPase MMR_HSR1 PF01926.18 gi|385802756|ref|YP_005839156.1| - 0.033 14.1 0.0 5.1 7.0 0.0 2.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase Miro PF08477.8 gi|385802756|ref|YP_005839156.1| - 0.041 14.3 0.0 8.4 6.9 0.0 2.5 2 0 0 2 2 2 0 Miro-like protein SRP54 PF00448.17 gi|385802756|ref|YP_005839156.1| - 0.054 12.9 1.4 2.1 7.7 0.1 2.6 3 0 0 3 3 2 0 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|385802756|ref|YP_005839156.1| - 0.055 13.0 0.1 9.5 5.7 0.0 2.7 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|385802756|ref|YP_005839156.1| - 0.073 12.2 0.0 12 5.0 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ArgK PF03308.11 gi|385802756|ref|YP_005839156.1| - 0.076 11.7 1.1 3.4 6.3 0.0 2.2 2 0 0 2 2 2 0 ArgK protein Fer4_9 PF13187.1 gi|385802756|ref|YP_005839156.1| - 0.12 12.6 11.2 0.22 11.8 7.8 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain UPF0079 PF02367.12 gi|385802756|ref|YP_005839156.1| - 0.13 11.8 0.0 12 5.5 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_19 PF13245.1 gi|385802756|ref|YP_005839156.1| - 0.14 11.9 4.9 4.1 7.2 0.2 3.4 3 0 0 3 3 3 0 Part of AAA domain IstB_IS21 PF01695.12 gi|385802756|ref|YP_005839156.1| - 0.17 11.2 0.3 13 5.1 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein Fer4_2 PF12797.2 gi|385802756|ref|YP_005839156.1| - 0.2 11.6 12.9 0.28 11.1 1.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|385802756|ref|YP_005839156.1| - 0.22 11.9 10.9 0.63 10.4 7.6 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain DUF87 PF01935.12 gi|385802756|ref|YP_005839156.1| - 0.31 10.8 1.4 16 5.2 0.1 3.0 3 1 0 3 3 3 0 Domain of unknown function DUF87 Fer4_10 PF13237.1 gi|385802756|ref|YP_005839156.1| - 0.58 10.0 11.1 1.2 9.0 7.7 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|385802756|ref|YP_005839156.1| - 1.2 9.0 7.9 2.6 7.9 5.5 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|385802756|ref|YP_005839156.1| - 3.8 8.3 10.4 0.24 12.1 1.0 2.1 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|385802756|ref|YP_005839156.1| - 9.6 7.0 13.3 0.12 12.9 2.1 2.4 2 0 0 2 2 1 0 4Fe-4S binding domain Usp PF00582.21 gi|385802757|ref|YP_005839157.1| - 2.5e-20 73.0 5.4 6.6e-20 71.7 3.8 1.6 1 1 0 1 1 1 1 Universal stress protein family Peptidase_M54 PF07998.6 gi|385802758|ref|YP_005839158.1| - 2.2e-22 79.8 0.0 2.8e-22 79.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Reprolysin_2 PF13574.1 gi|385802758|ref|YP_005839158.1| - 1.2e-06 28.7 0.0 1.5e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|385802758|ref|YP_005839158.1| - 2.7e-06 27.0 0.0 3.2e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.1 gi|385802758|ref|YP_005839158.1| - 0.00011 22.7 0.0 0.00015 22.3 0.0 1.3 1 1 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M10 PF00413.19 gi|385802758|ref|YP_005839158.1| - 0.00016 21.4 0.0 0.0003 20.5 0.0 1.3 1 1 0 1 1 1 1 Matrixin Reprolysin_5 PF13688.1 gi|385802758|ref|YP_005839158.1| - 0.00042 20.2 0.0 0.00047 20.1 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 DUF1025 PF06262.6 gi|385802758|ref|YP_005839158.1| - 0.0019 17.9 0.0 0.006 16.3 0.0 1.8 2 0 0 2 2 2 1 Possibl zinc metallo-peptidase Peptidase_M66 PF10462.4 gi|385802758|ref|YP_005839158.1| - 0.0084 15.0 0.0 0.0094 14.8 0.0 1.2 1 0 0 1 1 1 1 Peptidase M66 Metallopep PF12044.3 gi|385802758|ref|YP_005839158.1| - 0.0092 14.4 0.2 0.013 13.9 0.1 1.2 1 0 0 1 1 1 1 Putative peptidase family DUF4374 PF14298.1 gi|385802758|ref|YP_005839158.1| - 0.046 12.2 0.0 0.061 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4374) Peptidase_M43 PF05572.8 gi|385802758|ref|YP_005839158.1| - 0.062 12.8 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A UPF0146 PF03686.8 gi|385802759|ref|YP_005839159.1| - 1.2e-18 67.1 0.0 1.4e-18 66.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) HAD_2 PF13419.1 gi|385802760|ref|YP_005839160.1| - 1.4e-12 48.1 0.2 2.8e-11 43.9 0.1 2.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|385802760|ref|YP_005839160.1| - 9.4e-07 28.4 1.4 1.2e-06 28.1 0.1 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|385802760|ref|YP_005839160.1| - 1.4e-06 28.8 0.1 0.0039 17.6 0.0 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Lactamase_B PF00753.22 gi|385802761|ref|YP_005839161.1| - 2e-18 66.7 2.5 3e-18 66.1 1.7 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|385802761|ref|YP_005839161.1| - 0.00045 19.8 1.7 0.00077 19.0 1.2 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Tom22 PF04281.8 gi|385802762|ref|YP_005839162.1| - 0.93 9.0 3.9 1.1 8.7 2.7 1.1 1 0 0 1 1 1 0 Mitochondrial import receptor subunit Tom22 TFIIA PF03153.8 gi|385802762|ref|YP_005839162.1| - 4.4 7.0 8.5 4.8 6.9 5.9 1.0 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit DUF99 PF01949.11 gi|385802763|ref|YP_005839163.1| - 1.7e-62 209.8 0.0 1.9e-62 209.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 UDG PF03167.14 gi|385802764|ref|YP_005839164.1| - 2.5e-35 121.2 0.0 3.2e-35 120.8 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily ABC_tran PF00005.22 gi|385802766|ref|YP_005839166.1| - 6e-32 110.8 0.1 9.6e-32 110.1 0.1 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385802766|ref|YP_005839166.1| - 8.9e-12 45.5 0.0 2.9e-05 24.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|385802766|ref|YP_005839166.1| - 4.4e-06 26.8 0.1 6.9e-06 26.1 0.1 1.3 1 0 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|385802766|ref|YP_005839166.1| - 7.5e-05 21.9 0.1 0.00014 21.0 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|385802766|ref|YP_005839166.1| - 0.00011 21.5 0.1 0.072 12.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|385802766|ref|YP_005839166.1| - 0.00026 20.1 0.0 0.24 10.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|385802766|ref|YP_005839166.1| - 0.00034 20.0 0.0 0.00069 19.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|385802766|ref|YP_005839166.1| - 0.00086 19.2 0.8 0.0052 16.7 0.5 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase SbcCD_C PF13558.1 gi|385802766|ref|YP_005839166.1| - 0.0012 18.6 0.3 0.027 14.3 0.2 2.6 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.1 gi|385802766|ref|YP_005839166.1| - 0.0014 17.2 0.0 0.33 9.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|385802766|ref|YP_005839166.1| - 0.0018 18.6 0.3 0.0031 17.8 0.1 1.5 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|385802766|ref|YP_005839166.1| - 0.0055 17.0 0.1 0.033 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|385802766|ref|YP_005839166.1| - 0.013 15.5 0.2 0.027 14.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|385802766|ref|YP_005839166.1| - 0.014 14.8 0.1 0.05 12.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|385802766|ref|YP_005839166.1| - 0.015 14.8 0.3 0.03 13.9 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|385802766|ref|YP_005839166.1| - 0.019 14.4 0.6 0.035 13.5 0.4 1.7 1 1 0 1 1 1 0 AAA-like domain AAA_17 PF13207.1 gi|385802766|ref|YP_005839166.1| - 0.026 15.3 0.0 0.053 14.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|385802766|ref|YP_005839166.1| - 0.028 14.3 0.3 0.065 13.1 0.2 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|385802766|ref|YP_005839166.1| - 0.058 13.2 0.2 0.11 12.3 0.2 1.6 1 1 0 1 1 1 0 AAA domain MLIP PF15274.1 gi|385802766|ref|YP_005839166.1| - 0.095 12.1 0.4 7 6.0 0.1 2.1 2 0 0 2 2 2 0 Muscular LMNA-interacting protein Miro PF08477.8 gi|385802766|ref|YP_005839166.1| - 0.11 12.9 0.1 0.28 11.6 0.1 1.6 1 0 0 1 1 1 0 Miro-like protein Arch_ATPase PF01637.13 gi|385802766|ref|YP_005839166.1| - 0.12 12.0 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase Phosphonate-bd PF12974.2 gi|385802767|ref|YP_005839167.1| - 1.4e-53 181.7 0.7 1.7e-53 181.5 0.5 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.15 gi|385802767|ref|YP_005839167.1| - 0.0022 17.2 0.0 0.0035 16.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 TAT_signal PF10518.4 gi|385802767|ref|YP_005839167.1| - 0.018 14.9 1.3 0.018 14.9 0.9 2.3 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence DUF4223 PF13978.1 gi|385802767|ref|YP_005839167.1| - 0.034 13.8 0.6 0.44 10.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4223) GATase PF00117.23 gi|385802768|ref|YP_005839168.1| - 8.2e-34 116.7 0.0 1.1e-33 116.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|385802768|ref|YP_005839168.1| - 2.1e-08 33.8 0.1 5e-08 32.6 0.0 1.7 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.14 gi|385802768|ref|YP_005839168.1| - 3.5e-08 33.2 0.0 1e-07 31.7 0.0 1.7 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|385802768|ref|YP_005839168.1| - 4.1e-07 29.6 0.1 1.7e-06 27.6 0.1 2.0 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|385802768|ref|YP_005839168.1| - 0.0019 17.6 0.0 0.0058 16.0 0.0 1.7 2 0 0 2 2 2 1 DJ-1/PfpI family GATase_5 PF13507.1 gi|385802768|ref|YP_005839168.1| - 0.028 13.3 0.0 0.36 9.6 0.0 2.5 2 1 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain PDT PF00800.13 gi|385802769|ref|YP_005839169.1| - 9.1e-45 152.4 0.2 1.2e-44 152.0 0.2 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|385802769|ref|YP_005839169.1| - 3.2e-07 29.7 0.0 1.2e-06 27.8 0.0 2.0 2 0 0 2 2 2 1 ACT domain DUF59 PF01883.14 gi|385802771|ref|YP_005839171.1| - 2.2e-12 46.7 0.0 4.7e-12 45.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF59 Amidohydro_2 PF04909.9 gi|385802772|ref|YP_005839172.1| - 3.3e-34 118.7 1.2 4.2e-34 118.3 0.8 1.1 1 0 0 1 1 1 1 Amidohydrolase OCD_Mu_crystall PF02423.10 gi|385802774|ref|YP_005839174.1| - 5.9e-89 297.9 1.3 6.9e-89 297.7 0.9 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|385802774|ref|YP_005839174.1| - 2.5e-05 24.3 0.0 4.1e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.17 gi|385802774|ref|YP_005839174.1| - 0.057 13.9 0.1 0.13 12.7 0.1 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Cpn60_TCP1 PF00118.19 gi|385802775|ref|YP_005839175.1| - 2.2e-151 504.8 8.5 2.5e-151 504.6 5.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family CSD PF00313.17 gi|385802776|ref|YP_005839176.1| - 2e-20 72.3 0.2 2.2e-20 72.1 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.6 gi|385802776|ref|YP_005839176.1| - 0.028 13.9 2.0 0.04 13.4 1.4 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.1 gi|385802776|ref|YP_005839176.1| - 0.037 13.7 0.2 0.041 13.6 0.1 1.3 1 1 0 1 1 1 0 S1-like VanZ PF04892.7 gi|385802777|ref|YP_005839177.1| - 2.9e-09 36.9 1.9 4.1e-09 36.4 1.3 1.3 1 1 0 1 1 1 1 VanZ like family Nramp PF01566.13 gi|385802777|ref|YP_005839177.1| - 0.024 13.4 3.2 0.028 13.2 2.2 1.2 1 0 0 1 1 1 0 Natural resistance-associated macrophage protein TctB PF07331.6 gi|385802777|ref|YP_005839177.1| - 0.36 10.4 6.2 0.87 9.2 4.4 1.6 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF91 PF01939.11 gi|385802778|ref|YP_005839178.1| - 1.6e-64 217.1 0.0 1.8e-64 217.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 PDDEXK_4 PF14281.1 gi|385802778|ref|YP_005839178.1| - 0.011 15.5 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily Ribosomal_L16 PF00252.13 gi|385802779|ref|YP_005839179.1| - 1.1e-28 99.6 0.0 1.2e-28 99.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e RimK PF08443.6 gi|385802780|ref|YP_005839180.1| - 2.8e-30 105.2 0.0 3.6e-30 104.8 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|385802780|ref|YP_005839180.1| - 3.9e-18 65.8 0.0 5.5e-18 65.3 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|385802780|ref|YP_005839180.1| - 2.3e-09 36.6 0.0 3.4e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|385802780|ref|YP_005839180.1| - 3.1e-08 33.6 0.0 6.6e-08 32.5 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|385802780|ref|YP_005839180.1| - 3.3e-08 33.1 0.0 5.5e-08 32.4 0.0 1.3 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.1 gi|385802780|ref|YP_005839180.1| - 1.2e-07 30.7 0.0 2.4e-07 29.7 0.0 1.3 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|385802780|ref|YP_005839180.1| - 0.0015 17.8 0.0 0.0022 17.3 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.1 gi|385802780|ref|YP_005839180.1| - 0.0022 17.1 0.0 0.97 8.4 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp TTL PF03133.10 gi|385802780|ref|YP_005839180.1| - 0.0031 16.4 0.0 1.5 7.6 0.0 2.3 2 0 0 2 2 2 2 Tubulin-tyrosine ligase family ATP-grasp_5 PF13549.1 gi|385802780|ref|YP_005839180.1| - 0.066 12.4 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain HSP20 PF00011.16 gi|385802781|ref|YP_005839181.1| - 5e-08 32.7 0.0 1.4e-06 28.0 0.0 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|385802781|ref|YP_005839181.1| - 4.6e-06 26.3 0.3 5.5e-06 26.1 0.2 1.2 1 0 0 1 1 1 1 GvpH Gp_dh_C PF02800.15 gi|385802782|ref|YP_005839182.1| - 1.1e-57 193.8 0.0 1.5e-57 193.4 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|385802782|ref|YP_005839182.1| - 5.2e-49 166.0 0.0 7.4e-49 165.5 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|385802782|ref|YP_005839182.1| - 0.00092 19.1 0.1 0.0022 17.9 0.0 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|385802782|ref|YP_005839182.1| - 0.015 15.7 0.0 0.044 14.1 0.0 1.8 1 1 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain PGK PF00162.14 gi|385802783|ref|YP_005839183.1| - 1.7e-108 362.6 0.9 2e-108 362.4 0.6 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Lum_binding PF00677.12 gi|385802784|ref|YP_005839184.1| - 3.4e-35 119.7 0.5 4.8e-19 68.0 0.0 2.1 2 0 0 2 2 2 2 Lumazine binding domain PrsW-protease PF13367.1 gi|385802785|ref|YP_005839185.1| - 2.9e-44 150.5 12.8 2.9e-44 150.5 8.9 1.7 2 0 0 2 2 2 1 Protease prsW family DUF402 PF04167.8 gi|385802786|ref|YP_005839186.1| - 2.6e-22 78.4 0.3 5.5e-22 77.3 0.2 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF402) 4HBT PF03061.17 gi|385802787|ref|YP_005839187.1| - 3.9e-17 62.1 0.0 5.6e-17 61.6 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|385802787|ref|YP_005839187.1| - 0.096 13.1 0.0 0.12 12.8 0.0 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily Gly-zipper_OmpA PF13436.1 gi|385802789|ref|YP_005839189.1| - 4.1e-05 23.2 2.2 4.9e-05 22.9 1.5 1.1 1 0 0 1 1 1 1 Glycine-zipper containing OmpA-like membrane domain Rick_17kDa_Anti PF05433.10 gi|385802789|ref|YP_005839189.1| - 0.002 17.7 5.9 0.26 10.9 0.3 2.2 2 0 0 2 2 2 2 Glycine zipper 2TM domain TraT PF05818.7 gi|385802789|ref|YP_005839189.1| - 0.01 15.2 0.8 0.013 14.9 0.6 1.1 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein DUF1183 PF06682.7 gi|385802789|ref|YP_005839189.1| - 0.021 14.4 0.1 0.024 14.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1183) Gly-zipper_Omp PF13488.1 gi|385802789|ref|YP_005839189.1| - 0.043 13.4 11.0 0.095 12.3 7.6 1.6 1 1 0 1 1 1 0 Glycine zipper DUF3482 PF11981.3 gi|385802789|ref|YP_005839189.1| - 0.082 12.1 2.4 0.095 11.9 1.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) Gly-zipper_YMGG PF13441.1 gi|385802789|ref|YP_005839189.1| - 0.22 11.0 10.8 0.43 10.1 6.9 1.8 1 1 1 2 2 2 0 YMGG-like Gly-zipper Romo1 PF10247.4 gi|385802789|ref|YP_005839189.1| - 0.36 11.0 4.7 0.81 9.9 1.0 2.0 1 1 1 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 Bacteriocin_IIc PF10439.4 gi|385802789|ref|YP_005839189.1| - 6.1 7.0 8.9 34 4.6 6.2 1.9 1 1 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide CbiA PF01656.18 gi|385802791|ref|YP_005839191.1| - 7.6e-23 80.9 0.6 9.2e-23 80.6 0.4 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|385802791|ref|YP_005839191.1| - 5e-07 29.1 0.0 0.00019 20.7 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|385802791|ref|YP_005839191.1| - 2.9e-06 27.2 0.1 4.5e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|385802791|ref|YP_005839191.1| - 9e-05 21.6 0.6 0.00034 19.8 0.4 1.8 1 1 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.1 gi|385802791|ref|YP_005839191.1| - 0.0018 17.6 1.0 0.0026 17.1 0.2 1.6 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|385802791|ref|YP_005839191.1| - 0.0022 17.0 0.4 0.012 14.7 0.6 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.6 gi|385802791|ref|YP_005839191.1| - 0.015 14.3 0.5 0.026 13.6 0.4 1.3 1 0 0 1 1 1 0 VirC1 protein AAA_30 PF13604.1 gi|385802791|ref|YP_005839191.1| - 0.043 13.3 0.5 0.2 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain PIF1 PF05970.9 gi|385802791|ref|YP_005839191.1| - 0.087 11.7 0.1 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase AAA_26 PF13500.1 gi|385802791|ref|YP_005839191.1| - 0.13 11.8 0.6 0.64 9.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain GATase_3 PF07685.9 gi|385802792|ref|YP_005839192.1| - 3e-30 104.8 0.1 2.8e-29 101.7 0.0 2.2 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|385802792|ref|YP_005839192.1| - 3.3e-24 85.3 0.2 4.9e-24 84.8 0.1 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|385802792|ref|YP_005839192.1| - 5.5e-18 65.3 1.1 1.9e-17 63.5 0.8 1.9 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|385802792|ref|YP_005839192.1| - 0.00051 19.7 0.0 0.44 10.2 0.0 3.2 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B GATase PF00117.23 gi|385802792|ref|YP_005839192.1| - 0.013 14.9 0.0 0.036 13.5 0.0 1.7 1 0 0 1 1 1 0 Glutamine amidotransferase class-I CobA_CobO_BtuR PF02572.10 gi|385802793|ref|YP_005839193.1| - 1.7e-55 187.2 0.0 2.1e-55 187.0 0.0 1.1 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CbiA PF01656.18 gi|385802793|ref|YP_005839193.1| - 0.062 12.6 0.2 0.11 11.8 0.1 1.3 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain IstB_IS21 PF01695.12 gi|385802793|ref|YP_005839193.1| - 0.59 9.5 2.5 8 5.8 0.4 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein CbiZ PF01955.13 gi|385802794|ref|YP_005839194.1| - 2.8e-34 118.5 4.4 1.9e-29 102.8 2.7 2.4 1 1 0 2 2 2 2 Adenosylcobinamide amidohydrolase Aminotran_1_2 PF00155.16 gi|385802795|ref|YP_005839195.1| - 8e-30 103.9 0.0 9.5e-30 103.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|385802795|ref|YP_005839195.1| - 0.0074 15.3 1.2 0.021 13.8 0.2 1.8 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family NeA_P2 PF12312.3 gi|385802795|ref|YP_005839195.1| - 0.012 14.8 0.1 0.019 14.1 0.0 1.3 1 0 0 1 1 1 0 Nepovirus subgroup A polyprotein DBI_PRT PF02277.12 gi|385802796|ref|YP_005839196.1| - 2.9e-16 59.4 1.0 4.1e-16 59.0 0.7 1.3 1 0 0 1 1 1 1 Phosphoribosyltransferase NTP_transf_3 PF12804.2 gi|385802797|ref|YP_005839197.1| - 4.3e-11 43.1 0.1 4.3e-11 43.1 0.0 1.6 2 0 0 2 2 2 1 MobA-like NTP transferase domain CofC PF01983.11 gi|385802797|ref|YP_005839197.1| - 0.016 14.1 0.0 0.024 13.5 0.0 1.5 1 1 0 1 1 1 0 Guanylyl transferase CofC like CTP_transf_3 PF02348.14 gi|385802797|ref|YP_005839197.1| - 0.022 14.3 0.0 0.034 13.7 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase NTP_transferase PF00483.18 gi|385802797|ref|YP_005839197.1| - 0.038 13.3 1.0 0.17 11.1 0.0 1.9 2 0 0 2 2 2 0 Nucleotidyl transferase CobS PF02654.10 gi|385802798|ref|YP_005839198.1| - 5.7e-37 127.5 13.2 6.8e-37 127.2 9.1 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase DUF4400 PF14348.1 gi|385802798|ref|YP_005839198.1| - 0.017 14.5 0.7 0.017 14.5 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4400) CobD_Cbib PF03186.8 gi|385802799|ref|YP_005839199.1| - 3.2e-76 256.2 9.2 3.8e-76 255.9 6.3 1.1 1 0 0 1 1 1 1 CobD/Cbib protein DUF1049 PF06305.6 gi|385802799|ref|YP_005839199.1| - 3.5 7.1 6.4 4.3 6.8 0.6 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1049) HAD_2 PF13419.1 gi|385802800|ref|YP_005839200.1| - 2.6e-19 70.0 0.0 3.1e-19 69.8 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|385802800|ref|YP_005839200.1| - 3.5e-08 34.1 0.3 1.7e-07 31.8 0.2 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|385802800|ref|YP_005839200.1| - 0.00015 21.4 0.0 0.00028 20.5 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like zf-ribbon_3 PF13248.1 gi|385802801|ref|YP_005839201.1| - 1e-09 37.2 12.3 9.3e-05 21.5 2.8 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|385802801|ref|YP_005839201.1| - 3.4e-08 33.1 9.6 9.5e-08 31.7 6.8 1.7 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|385802801|ref|YP_005839201.1| - 3.4e-08 32.7 13.3 0.0003 20.1 3.6 2.4 2 0 0 2 2 2 2 zinc-ribbon domain RHH_1 PF01402.16 gi|385802801|ref|YP_005839201.1| - 0.00041 20.1 0.4 0.032 14.1 0.1 2.4 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family UPF0547 PF10571.4 gi|385802801|ref|YP_005839201.1| - 0.0026 17.4 5.3 0.6 9.8 0.2 3.2 3 0 0 3 3 3 1 Uncharacterised protein family UPF0547 Cys_rich_KTR PF14205.1 gi|385802801|ref|YP_005839201.1| - 0.0038 16.6 2.8 1.4 8.4 0.0 2.6 2 1 0 2 2 2 2 Cysteine-rich KTR Zn-ribbon_8 PF09723.5 gi|385802801|ref|YP_005839201.1| - 0.0038 17.1 8.8 1.8 8.5 0.1 3.5 2 1 1 3 3 3 2 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|385802801|ref|YP_005839201.1| - 0.008 15.8 9.3 1.3 8.8 1.4 3.7 3 1 0 3 3 3 2 Nudix N-terminal Zn_Tnp_IS91 PF14319.1 gi|385802801|ref|YP_005839201.1| - 0.0093 15.4 5.1 0.016 14.6 3.5 1.4 1 0 0 1 1 1 1 Transposase zinc-binding domain PolC_DP2 PF03833.8 gi|385802801|ref|YP_005839201.1| - 0.013 13.2 4.5 0.016 12.8 3.1 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-C3HC4_3 PF13920.1 gi|385802801|ref|YP_005839201.1| - 0.014 15.0 6.0 0.39 10.4 0.4 2.2 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Auto_anti-p27 PF06677.7 gi|385802801|ref|YP_005839201.1| - 0.033 13.9 7.0 0.062 13.0 1.6 2.4 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF2191 PF09957.4 gi|385802801|ref|YP_005839201.1| - 0.052 13.3 3.2 0.28 11.0 0.1 2.6 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2191) DNA_ligase_ZBD PF03119.11 gi|385802801|ref|YP_005839201.1| - 0.12 12.1 2.9 6.7 6.4 0.1 2.8 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain NOB1_Zn_bind PF08772.6 gi|385802801|ref|YP_005839201.1| - 0.23 11.3 11.5 3.5 7.5 3.1 2.9 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF164 PF02591.10 gi|385802801|ref|YP_005839201.1| - 0.25 11.1 7.6 12 5.8 0.0 3.4 2 1 1 3 3 3 0 Putative zinc ribbon domain DUF2981 PF11200.3 gi|385802801|ref|YP_005839201.1| - 0.36 9.8 5.1 0.6 9.1 3.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2981) DUF2321 PF10083.4 gi|385802801|ref|YP_005839201.1| - 0.52 9.7 3.8 0.55 9.7 1.9 1.6 2 0 0 2 2 1 0 Uncharacterized protein conserved in bacteria (DUF2321) OrfB_Zn_ribbon PF07282.6 gi|385802801|ref|YP_005839201.1| - 0.57 9.8 11.2 0.084 12.5 1.9 2.8 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.6 gi|385802801|ref|YP_005839201.1| - 0.7 9.4 12.4 0.86 9.1 0.6 2.9 3 0 0 3 3 2 0 NADH pyrophosphatase zinc ribbon domain zinc-ribbons_6 PF07191.7 gi|385802801|ref|YP_005839201.1| - 0.79 9.5 8.9 8 6.3 6.3 2.1 1 1 1 2 2 2 0 zinc-ribbons zf-ISL3 PF14690.1 gi|385802801|ref|YP_005839201.1| - 0.83 9.7 8.4 5.4 7.1 0.5 3.3 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_L32p PF01783.18 gi|385802801|ref|YP_005839201.1| - 0.91 9.7 7.2 9.3 6.5 5.0 2.6 1 1 0 1 1 1 0 Ribosomal L32p protein family Ogr_Delta PF04606.7 gi|385802801|ref|YP_005839201.1| - 1.6 8.4 7.9 1.7 8.3 0.3 3.2 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger zf-H2C2_2 PF13465.1 gi|385802801|ref|YP_005839201.1| - 1.7 9.0 6.6 47 4.5 0.1 3.5 3 0 0 3 3 3 0 Zinc-finger double domain NRDD PF13597.1 gi|385802801|ref|YP_005839201.1| - 2.4 6.1 7.3 1 7.3 3.1 1.7 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase Cript PF10235.4 gi|385802801|ref|YP_005839201.1| - 3.2 8.1 9.7 3.4 8.0 4.2 2.6 1 1 1 2 2 2 0 Microtubule-associated protein CRIPT DUF1610 PF07754.6 gi|385802801|ref|YP_005839201.1| - 3.3 7.8 14.2 16 5.7 4.8 3.3 2 1 0 2 2 2 0 Domain of unknown function (DUF1610) ADK_lid PF05191.9 gi|385802801|ref|YP_005839201.1| - 3.6 7.3 6.6 51 3.6 0.0 3.5 3 0 0 3 3 3 0 Adenylate kinase, active site lid Sgf11 PF08209.6 gi|385802801|ref|YP_005839201.1| - 4 6.8 9.9 17 4.7 0.0 3.3 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) Prim_Zn_Ribbon PF08273.7 gi|385802801|ref|YP_005839201.1| - 4.3 7.4 14.1 1 9.4 5.6 2.6 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase DUF1272 PF06906.6 gi|385802801|ref|YP_005839201.1| - 5.8 6.8 9.3 0.33 10.8 0.7 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) Cys_rich_CPXG PF14255.1 gi|385802801|ref|YP_005839201.1| - 9.2 6.1 9.2 32 4.4 3.9 2.7 2 1 0 2 2 2 0 Cysteine-rich CPXCG Zn_ribbon_recom PF13408.1 gi|385802801|ref|YP_005839201.1| - 9.5 6.5 8.7 3.1 8.1 0.1 3.3 2 1 1 3 3 3 0 Recombinase zinc beta ribbon domain zf-C4_Topoisom PF01396.14 gi|385802801|ref|YP_005839201.1| - 9.9 5.7 10.4 21 4.7 0.1 3.7 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger RHH_1 PF01402.16 gi|385802802|ref|YP_005839202.1| - 6.2e-08 32.2 0.1 7.9e-08 31.8 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family CHASE3 PF05227.8 gi|385802802|ref|YP_005839202.1| - 0.16 11.6 1.0 0.16 11.6 0.7 1.1 1 0 0 1 1 1 0 CHASE3 domain FtsZ_C PF12327.3 gi|385802803|ref|YP_005839203.1| - 5.4e-35 119.3 0.7 5.4e-35 119.3 0.5 2.7 2 1 1 3 3 3 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|385802803|ref|YP_005839203.1| - 8.6e-33 113.9 2.6 4e-32 111.8 1.8 2.0 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain ThiF PF00899.16 gi|385802803|ref|YP_005839203.1| - 0.046 13.5 0.1 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 ThiF family Methyltransf_11 PF08241.7 gi|385802804|ref|YP_005839204.1| - 2.8e-14 53.3 0.0 7.6e-14 51.9 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385802804|ref|YP_005839204.1| - 4.2e-13 49.1 0.0 5.4e-13 48.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|385802804|ref|YP_005839204.1| - 2.9e-09 37.2 0.0 6.4e-09 36.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|385802804|ref|YP_005839204.1| - 1e-08 35.0 0.0 1.6e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|385802804|ref|YP_005839204.1| - 3.8e-07 29.4 0.0 5.7e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|385802804|ref|YP_005839204.1| - 4e-07 30.4 0.1 1.3e-06 28.8 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385802804|ref|YP_005839204.1| - 2.6e-06 28.0 0.9 1.5e-05 25.5 0.6 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|385802804|ref|YP_005839204.1| - 1.3e-05 25.2 9.6 8.9e-05 22.5 0.0 2.6 2 1 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|385802804|ref|YP_005839204.1| - 0.0018 17.6 0.2 0.0051 16.2 0.0 1.8 2 1 0 2 2 2 1 Methyltransferase small domain RrnaAD PF00398.15 gi|385802804|ref|YP_005839204.1| - 0.0044 16.0 0.0 0.0079 15.2 0.0 1.4 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase FtsJ PF01728.14 gi|385802804|ref|YP_005839204.1| - 0.0051 16.8 0.0 0.0073 16.3 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase PCMT PF01135.14 gi|385802804|ref|YP_005839204.1| - 0.0075 15.8 0.0 0.032 13.7 0.0 1.9 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.7 gi|385802804|ref|YP_005839204.1| - 0.013 14.9 0.0 0.021 14.1 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.1 gi|385802804|ref|YP_005839204.1| - 0.057 13.1 0.0 0.16 11.6 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain PrmA PF06325.8 gi|385802804|ref|YP_005839204.1| - 0.075 12.1 0.2 0.18 10.8 0.0 1.6 1 1 1 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) AP_endonuc_2 PF01261.19 gi|385802805|ref|YP_005839205.1| - 3.8e-25 88.4 0.4 6.7e-25 87.6 0.1 1.5 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Aldedh PF00171.17 gi|385802806|ref|YP_005839206.1| - 3.8e-140 467.3 0.0 4.2e-140 467.1 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family RIO1 PF01163.17 gi|385802807|ref|YP_005839207.1| - 2.7e-45 154.0 0.4 3.9e-45 153.5 0.3 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|385802807|ref|YP_005839207.1| - 6.4e-26 90.2 0.0 1.4e-25 89.1 0.0 1.6 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|385802807|ref|YP_005839207.1| - 0.0022 17.7 0.5 0.5 10.0 0.0 2.7 1 1 1 2 2 2 2 Phosphotransferase enzyme family ABC_tran PF00005.22 gi|385802808|ref|YP_005839208.1| - 2.6e-29 102.2 0.0 2.6e-28 99.0 0.0 2.1 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|385802808|ref|YP_005839208.1| - 4.8e-09 36.5 0.1 0.00018 21.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain TOBE PF03459.12 gi|385802808|ref|YP_005839208.1| - 3.9e-07 30.0 2.9 3.7e-05 23.7 0.2 2.5 2 0 0 2 2 2 1 TOBE domain TOBE_2 PF08402.5 gi|385802808|ref|YP_005839208.1| - 1.8e-06 27.8 0.3 1.1e-05 25.3 0.1 2.4 2 0 0 2 2 2 1 TOBE domain SMC_N PF02463.14 gi|385802808|ref|YP_005839208.1| - 0.00018 20.8 0.0 0.53 9.4 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|385802808|ref|YP_005839208.1| - 0.00038 19.9 0.2 0.0014 18.0 0.0 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|385802808|ref|YP_005839208.1| - 0.00063 19.7 0.6 0.002 18.1 0.4 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|385802808|ref|YP_005839208.1| - 0.0018 18.0 0.1 0.0095 15.6 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain AAA_33 PF13671.1 gi|385802808|ref|YP_005839208.1| - 0.006 16.4 0.6 0.047 13.5 0.4 2.2 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|385802808|ref|YP_005839208.1| - 0.0097 16.0 0.2 0.053 13.6 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|385802808|ref|YP_005839208.1| - 0.01 15.4 0.0 0.063 12.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|385802808|ref|YP_005839208.1| - 0.013 14.8 0.0 0.073 12.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|385802808|ref|YP_005839208.1| - 0.016 14.3 0.0 0.038 13.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|385802808|ref|YP_005839208.1| - 0.025 14.9 0.0 0.039 14.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|385802808|ref|YP_005839208.1| - 0.026 15.3 0.1 0.04 14.7 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|385802808|ref|YP_005839208.1| - 0.03 13.3 0.0 4.6 6.1 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain MobB PF03205.9 gi|385802808|ref|YP_005839208.1| - 0.065 12.9 0.1 0.18 11.5 0.1 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|385802808|ref|YP_005839208.1| - 0.2 11.3 0.0 0.32 10.6 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase BPD_transp_1 PF00528.17 gi|385802809|ref|YP_005839209.1| - 3e-19 69.2 13.5 3e-19 69.2 9.4 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4212 PF13937.1 gi|385802809|ref|YP_005839209.1| - 0.097 12.6 2.5 0.25 11.3 0.6 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4212) SBP_bac_11 PF13531.1 gi|385802810|ref|YP_005839210.1| - 2.1e-19 70.1 0.1 3.1e-19 69.5 0.1 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF4251 PF14059.1 gi|385802810|ref|YP_005839210.1| - 0.015 15.1 0.1 0.036 13.8 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4251) Ribosomal_L15e PF00827.12 gi|385802811|ref|YP_005839211.1| - 6.4e-82 273.7 4.8 7.3e-82 273.5 3.3 1.0 1 0 0 1 1 1 1 Ribosomal L15 ThiF PF00899.16 gi|385802812|ref|YP_005839212.1| - 1.3e-43 148.0 0.1 1.8e-43 147.5 0.1 1.2 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|385802812|ref|YP_005839212.1| - 3e-31 106.8 0.1 4.9e-31 106.1 0.1 1.4 1 0 0 1 1 1 1 MoeZ/MoeB domain Shikimate_DH PF01488.15 gi|385802812|ref|YP_005839212.1| - 0.00069 19.7 0.0 0.0012 18.9 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.11 gi|385802812|ref|YP_005839212.1| - 0.013 14.9 0.0 0.019 14.4 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Saccharop_dh PF03435.13 gi|385802812|ref|YP_005839212.1| - 0.018 14.0 0.2 0.03 13.3 0.1 1.4 1 1 0 1 1 1 0 Saccharopine dehydrogenase XdhC_C PF13478.1 gi|385802812|ref|YP_005839212.1| - 0.026 14.8 0.0 0.039 14.2 0.0 1.2 1 0 0 1 1 1 0 XdhC Rossmann domain NAD_binding_7 PF13241.1 gi|385802812|ref|YP_005839212.1| - 0.031 14.5 0.0 0.058 13.6 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding UbiA PF01040.13 gi|385802813|ref|YP_005839213.1| - 2.7e-29 102.1 20.9 3.5e-29 101.8 14.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF1643 PF07799.7 gi|385802814|ref|YP_005839214.1| - 6.3e-42 142.4 0.0 7.7e-42 142.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1643) DUF134 PF02001.11 gi|385802816|ref|YP_005839216.1| - 1.2e-05 25.1 0.0 1.4e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.7 gi|385802816|ref|YP_005839216.1| - 0.00068 19.0 0.0 0.00093 18.6 0.0 1.1 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_40 PF14493.1 gi|385802816|ref|YP_005839216.1| - 0.0018 18.4 0.1 0.0021 18.2 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|385802816|ref|YP_005839216.1| - 0.025 14.6 0.0 0.035 14.0 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|385802816|ref|YP_005839216.1| - 0.079 12.2 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_10 PF04967.7 gi|385802816|ref|YP_005839216.1| - 0.14 11.8 0.0 0.26 10.8 0.0 1.5 2 0 0 2 2 2 0 HTH DNA binding domain SnoaL_2 PF12680.2 gi|385802817|ref|YP_005839217.1| - 1.1e-08 35.3 0.2 1.4e-08 35.0 0.2 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.1 gi|385802817|ref|YP_005839217.1| - 6.3e-05 23.1 0.2 7.4e-05 22.9 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL PF07366.7 gi|385802817|ref|YP_005839217.1| - 0.00069 19.2 0.1 0.0008 18.9 0.1 1.1 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_4 PF13577.1 gi|385802817|ref|YP_005839217.1| - 0.004 17.0 0.1 0.0047 16.8 0.1 1.2 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_3 PF13474.1 gi|385802817|ref|YP_005839217.1| - 0.015 15.2 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 SnoaL-like domain NTF2 PF02136.15 gi|385802817|ref|YP_005839217.1| - 0.04 14.2 0.2 0.05 13.9 0.1 1.2 1 0 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain CBS PF00571.23 gi|385802818|ref|YP_005839218.1| - 1.3e-26 92.1 0.8 1e-12 47.5 0.0 2.2 2 0 0 2 2 2 2 CBS domain ABC_tran PF00005.22 gi|385802819|ref|YP_005839219.1| - 3.4e-37 127.8 0.0 8.4e-37 126.5 0.0 1.7 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|385802819|ref|YP_005839219.1| - 2.4e-13 49.8 0.0 6.1e-13 48.5 0.0 1.7 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.1 gi|385802819|ref|YP_005839219.1| - 5.4e-07 29.8 0.6 0.0073 16.3 0.0 2.8 2 1 1 3 3 3 2 AAA domain TOBE PF03459.12 gi|385802819|ref|YP_005839219.1| - 0.00043 20.3 0.0 0.11 12.6 0.0 2.6 2 0 0 2 2 2 1 TOBE domain AAA_15 PF13175.1 gi|385802819|ref|YP_005839219.1| - 0.00048 19.2 0.5 0.063 12.3 0.0 2.9 3 0 0 3 3 3 1 AAA ATPase domain AAA_16 PF13191.1 gi|385802819|ref|YP_005839219.1| - 0.0019 18.1 1.3 0.0035 17.3 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|385802819|ref|YP_005839219.1| - 0.0024 17.1 2.7 0.16 11.2 0.1 2.5 2 1 1 3 3 3 2 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|385802819|ref|YP_005839219.1| - 0.015 14.4 0.0 0.03 13.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|385802819|ref|YP_005839219.1| - 0.017 15.3 0.2 0.093 12.9 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|385802819|ref|YP_005839219.1| - 0.021 14.9 0.6 0.092 12.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|385802819|ref|YP_005839219.1| - 0.024 14.1 0.0 0.066 12.7 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|385802819|ref|YP_005839219.1| - 0.025 14.4 0.0 0.11 12.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|385802819|ref|YP_005839219.1| - 0.035 12.8 0.0 0.055 12.1 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein ATP-synt_ab PF00006.20 gi|385802819|ref|YP_005839219.1| - 0.05 13.0 0.0 0.14 11.6 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_25 PF13481.1 gi|385802819|ref|YP_005839219.1| - 0.069 12.5 0.0 0.2 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|385802819|ref|YP_005839219.1| - 0.14 12.6 0.3 0.5 10.8 0.0 2.1 3 0 0 3 3 1 0 Miro-like protein BPD_transp_1 PF00528.17 gi|385802820|ref|YP_005839220.1| - 1.7e-18 66.8 24.0 1.7e-18 66.8 16.7 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|385802821|ref|YP_005839221.1| - 6.4e-14 51.8 18.6 6.4e-14 51.8 12.9 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|385802822|ref|YP_005839222.1| - 4.3e-29 102.1 0.0 6.9e-29 101.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|385802822|ref|YP_005839222.1| - 9.2e-19 67.7 0.1 1.3e-18 67.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|385802822|ref|YP_005839222.1| - 6.3e-05 22.8 0.1 0.00076 19.2 0.0 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|385802822|ref|YP_005839222.1| - 0.0032 17.3 0.9 0.0062 16.4 0.7 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_11 PF13531.1 gi|385802822|ref|YP_005839222.1| - 0.024 14.2 0.0 0.081 12.5 0.0 1.9 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein UCR_Fe-S_N PF10399.4 gi|385802822|ref|YP_005839222.1| - 0.07 12.3 0.1 0.14 11.3 0.1 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal tRNA_anti-codon PF01336.20 gi|385802823|ref|YP_005839223.1| - 4.2e-29 100.2 8.3 1.5e-11 44.0 0.1 4.1 4 0 0 4 4 4 3 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|385802823|ref|YP_005839223.1| - 0.0026 17.4 0.2 1.2 8.8 0.0 3.3 3 0 0 3 3 3 1 Replication factor-A C terminal domain CBFD_NFYB_HMF PF00808.18 gi|385802824|ref|YP_005839224.1| - 1.9e-24 85.5 0.5 1.8e-14 53.5 0.1 2.0 2 0 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|385802824|ref|YP_005839224.1| - 9e-15 54.5 0.9 1.3e-10 41.2 0.3 2.1 2 0 0 2 2 2 2 Core histone H2A/H2B/H3/H4 CENP-S PF15630.1 gi|385802824|ref|YP_005839224.1| - 0.00041 20.4 0.1 0.00068 19.7 0.1 1.3 1 0 0 1 1 1 1 Kinetochore component CENP-S TFIID_20kDa PF03847.8 gi|385802824|ref|YP_005839224.1| - 0.002 18.3 0.2 0.0033 17.6 0.1 1.3 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TFIID-31kDa PF02291.10 gi|385802824|ref|YP_005839224.1| - 0.051 13.3 0.3 0.089 12.5 0.2 1.4 1 0 0 1 1 1 0 Transcription initiation factor IID, 31kD subunit Hist_deacetyl PF00850.14 gi|385802825|ref|YP_005839225.1| - 7.8e-83 278.3 0.0 9.5e-83 278.0 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain tRNA_NucTransf2 PF09249.6 gi|385802826|ref|YP_005839226.1| - 3.8e-43 145.9 0.0 6.3e-43 145.2 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|385802826|ref|YP_005839226.1| - 2.2e-13 50.3 0.0 5.2e-13 49.1 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF457 PF04307.9 gi|385802827|ref|YP_005839227.1| - 4.1e-14 52.1 8.8 5.2e-14 51.8 6.1 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF2189 PF09955.4 gi|385802827|ref|YP_005839227.1| - 0.56 10.1 9.4 0.66 9.9 0.2 2.8 2 1 1 3 3 3 0 Predicted integral membrane protein (DUF2189) Yip1 PF04893.12 gi|385802827|ref|YP_005839227.1| - 6.7 6.1 13.8 6.8 6.1 7.7 2.2 1 1 0 1 1 1 0 Yip1 domain NMT1 PF09084.6 gi|385802830|ref|YP_005839230.1| - 1.4e-10 41.1 1.9 4.6e-10 39.4 0.2 2.2 2 1 0 2 2 2 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|385802830|ref|YP_005839230.1| - 4e-08 32.9 1.8 7.7e-08 32.0 1.2 1.4 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_2 PF13379.1 gi|385802830|ref|YP_005839230.1| - 0.0032 16.8 0.7 0.038 13.3 0.4 2.1 1 1 1 2 2 2 2 NMT1-like family SBP_bac_3 PF00497.15 gi|385802830|ref|YP_005839230.1| - 0.0044 16.3 0.3 0.01 15.1 0.1 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 DUF1850 PF08905.6 gi|385802831|ref|YP_005839231.1| - 3.1e-23 81.4 0.0 4.6e-23 80.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) DctM PF06808.7 gi|385802832|ref|YP_005839232.1| - 1.2e-78 264.5 46.0 4.3e-53 180.3 16.0 3.7 4 0 0 4 4 4 2 DctM-like transporters FAD_binding_7 PF03441.9 gi|385802833|ref|YP_005839233.1| - 1.7e-73 247.2 1.2 1.7e-73 247.2 0.9 1.7 2 0 0 2 2 2 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|385802833|ref|YP_005839233.1| - 2.4e-15 56.6 0.0 1.3e-11 44.5 0.1 2.7 3 0 0 3 3 3 2 DNA photolyase Cytochrom_CIII PF02085.11 gi|385802834|ref|YP_005839234.1| - 0.055 13.5 0.4 0.056 13.5 0.3 1.0 1 0 0 1 1 1 0 Class III cytochrome C family HypA PF01155.14 gi|385802834|ref|YP_005839234.1| - 0.12 12.0 0.7 0.14 11.8 0.5 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family MARVEL PF01284.18 gi|385802835|ref|YP_005839235.1| - 2 8.2 9.9 2.5 7.9 0.5 2.2 1 1 1 2 2 2 0 Membrane-associating domain Herpes_LMP1 PF05297.6 gi|385802835|ref|YP_005839235.1| - 4.6 6.0 9.4 5.1 5.9 6.5 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) UPF0047 PF01894.12 gi|385802836|ref|YP_005839236.1| - 1e-35 122.1 0.3 1.2e-35 121.8 0.2 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 AAA_18 PF13238.1 gi|385802837|ref|YP_005839237.1| - 0.0031 17.8 0.0 0.0045 17.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|385802837|ref|YP_005839237.1| - 0.0088 16.0 0.2 0.016 15.1 0.1 1.5 1 1 1 2 2 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|385802837|ref|YP_005839237.1| - 0.0095 15.8 0.5 0.026 14.3 0.3 1.8 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|385802837|ref|YP_005839237.1| - 0.043 14.6 0.0 0.053 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|385802837|ref|YP_005839237.1| - 0.09 12.9 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain Form_Nir_trans PF01226.12 gi|385802839|ref|YP_005839239.1| - 2e-53 180.8 13.2 2.5e-53 180.5 9.2 1.1 1 0 0 1 1 1 1 Formate/nitrite transporter Usp PF00582.21 gi|385802839|ref|YP_005839239.1| - 3.9e-17 62.7 4.8 6.7e-09 36.0 0.0 2.5 2 0 0 2 2 2 2 Universal stress protein family AAA_26 PF13500.1 gi|385802839|ref|YP_005839239.1| - 0.18 11.3 1.2 0.49 9.9 0.1 2.1 3 0 0 3 3 3 0 AAA domain UPF0233 PF06781.7 gi|385802839|ref|YP_005839239.1| - 0.42 10.2 0.0 0.42 10.2 0.0 2.8 2 2 1 3 3 3 0 Uncharacterised protein family (UPF0233) zf-ribbon_3 PF13248.1 gi|385802840|ref|YP_005839240.1| - 4.8e-05 22.4 1.1 7.2e-05 21.8 0.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|385802840|ref|YP_005839240.1| - 4.9e-05 23.0 0.9 7e-05 22.5 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon TM2 PF05154.11 gi|385802840|ref|YP_005839240.1| - 0.00022 21.3 0.5 0.00031 20.8 0.4 1.2 1 0 0 1 1 1 1 TM2 domain UPF0547 PF10571.4 gi|385802840|ref|YP_005839240.1| - 0.0063 16.1 0.7 0.012 15.2 0.5 1.5 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|385802840|ref|YP_005839240.1| - 0.027 13.9 0.1 0.041 13.3 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain TerY-C PF15616.1 gi|385802840|ref|YP_005839240.1| - 0.12 12.2 2.2 2 8.3 0.1 2.1 1 1 1 2 2 2 0 TerY-C metal binding domain DUF1083 PF06452.6 gi|385802841|ref|YP_005839241.1| - 0.0022 17.9 1.2 0.0029 17.5 0.8 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1083) PsiE PF06146.7 gi|385802842|ref|YP_005839242.1| - 3.8e-14 52.6 3.9 7e-14 51.8 2.7 1.5 1 0 0 1 1 1 1 Phosphate-starvation-inducible E TspO_MBR PF03073.10 gi|385802842|ref|YP_005839242.1| - 0.0079 15.7 0.9 0.01 15.3 0.7 1.1 1 0 0 1 1 1 1 TspO/MBR family 7tm_3 PF00003.17 gi|385802842|ref|YP_005839242.1| - 0.043 13.1 0.6 0.053 12.8 0.1 1.4 2 0 0 2 2 2 0 7 transmembrane sweet-taste receptor of 3 GCPR DUF2537 PF10801.3 gi|385802842|ref|YP_005839242.1| - 0.19 11.8 5.2 4.4 7.4 0.1 2.7 3 1 0 3 3 3 0 Protein of unknown function (DUF2537) Rnf-Nqr PF02508.9 gi|385802842|ref|YP_005839242.1| - 0.42 10.1 4.4 1.1 8.8 3.1 1.6 1 1 0 1 1 1 0 Rnf-Nqr subunit, membrane protein YoqO PF14037.1 gi|385802842|ref|YP_005839242.1| - 0.6 10.2 5.2 0.79 9.8 3.6 1.2 1 0 0 1 1 1 0 YoqO-like protein Chromate_transp PF02417.10 gi|385802842|ref|YP_005839242.1| - 1.9 8.0 7.2 0.44 10.1 2.4 1.7 2 0 0 2 2 2 0 Chromate transporter PfkB PF00294.19 gi|385802843|ref|YP_005839243.1| - 7.1e-42 143.5 0.5 8e-42 143.4 0.4 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DUF4434 PF14488.1 gi|385802843|ref|YP_005839243.1| - 0.12 12.1 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4434) DNA_mis_repair PF01119.14 gi|385802844|ref|YP_005839244.1| - 9.8e-38 128.2 0.0 2e-37 127.2 0.0 1.5 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain MutL_C PF08676.6 gi|385802844|ref|YP_005839244.1| - 9.8e-36 122.5 0.0 1.6e-35 121.8 0.0 1.4 1 0 0 1 1 1 1 MutL C terminal dimerisation domain HATPase_c_3 PF13589.1 gi|385802844|ref|YP_005839244.1| - 4.6e-13 49.0 0.2 4.6e-13 49.0 0.2 2.8 2 1 1 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|385802844|ref|YP_005839244.1| - 6.7e-11 41.8 0.8 2.4e-10 40.1 0.3 2.2 2 1 1 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NUDIX PF00293.23 gi|385802845|ref|YP_005839245.1| - 8.9e-17 60.9 0.1 1.1e-16 60.7 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain Transglut_i_TM PF14400.1 gi|385802845|ref|YP_005839245.1| - 0.096 12.1 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Inactive transglutaminase fused to 7 transmembrane helices NUDIX_2 PF13869.1 gi|385802845|ref|YP_005839245.1| - 0.1 11.9 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Nucleotide hydrolase CARDB PF07705.6 gi|385802846|ref|YP_005839246.1| - 0.00069 19.6 0.0 0.0012 18.8 0.0 1.4 1 0 0 1 1 1 1 CARDB IncA PF04156.9 gi|385802846|ref|YP_005839246.1| - 0.086 12.4 0.1 0.2 11.2 0.0 1.7 2 0 0 2 2 2 0 IncA protein DUF1469 PF07332.6 gi|385802846|ref|YP_005839246.1| - 9.9 5.9 9.8 1.1 9.0 3.7 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) SBBP PF06739.6 gi|385802848|ref|YP_005839248.1| - 0.00095 18.9 0.2 1.2 9.0 0.0 2.7 3 0 0 3 3 3 2 Beta-propeller repeat DNA_repr_REX1B PF14966.1 gi|385802849|ref|YP_005839249.1| - 0.01 16.1 2.2 0.026 14.8 0.1 2.4 2 1 0 2 2 2 0 DNA repair REX1-B Snapin_Pallidin PF14712.1 gi|385802849|ref|YP_005839249.1| - 0.036 14.3 6.5 0.63 10.3 0.2 3.1 2 1 1 3 3 3 0 Snapin/Pallidin Lipoprotein_7 PF01540.11 gi|385802849|ref|YP_005839249.1| - 0.038 13.0 2.6 0.11 11.5 0.2 2.2 2 1 0 2 2 2 0 Adhesin lipoprotein DUF3080 PF11279.3 gi|385802849|ref|YP_005839249.1| - 0.053 12.6 2.9 0.16 11.1 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3080) DUF1886 PF09171.5 gi|385802849|ref|YP_005839249.1| - 0.07 12.1 0.1 0.13 11.2 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1886) Lge1 PF11488.3 gi|385802849|ref|YP_005839249.1| - 0.1 12.8 5.7 2.6 8.3 0.5 3.6 2 1 0 3 3 3 0 Transcriptional regulatory protein LGE1 Homeobox PF00046.24 gi|385802849|ref|YP_005839249.1| - 0.13 11.8 0.9 0.99 9.0 0.0 2.6 3 0 0 3 3 2 0 Homeobox domain Ubiquitin_3 PF14836.1 gi|385802849|ref|YP_005839249.1| - 0.14 11.8 1.8 0.22 11.2 0.2 2.1 2 1 0 2 2 2 0 Ubiquitin-like domain CK2S PF15011.1 gi|385802849|ref|YP_005839249.1| - 0.24 11.1 4.1 2.4 7.8 0.3 2.4 2 0 0 2 2 2 0 Casein Kinase 2 substrate BRX_N PF13713.1 gi|385802849|ref|YP_005839249.1| - 0.28 10.6 5.9 3.3 7.2 0.2 3.4 3 0 0 3 3 3 0 Transcription factor BRX N-terminal domain Nup54 PF13874.1 gi|385802849|ref|YP_005839249.1| - 0.3 10.7 6.6 1.4 8.5 3.7 2.4 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 DUF1090 PF06476.7 gi|385802849|ref|YP_005839249.1| - 0.32 10.6 3.6 1.7 8.3 0.3 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF1090) COG2 PF06148.6 gi|385802849|ref|YP_005839249.1| - 0.77 9.6 9.8 8.7 6.2 0.4 3.1 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Spore_YhcN_YlaJ PF09580.5 gi|385802849|ref|YP_005839249.1| - 0.78 9.8 9.8 20 5.2 5.9 3.2 2 1 0 2 2 2 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Spc7 PF08317.6 gi|385802849|ref|YP_005839249.1| - 0.79 8.3 11.3 0.41 9.2 2.0 2.2 1 1 0 2 2 2 0 Spc7 kinetochore protein T2SF PF00482.18 gi|385802849|ref|YP_005839249.1| - 1 9.2 3.9 2.4 8.0 0.3 2.7 1 1 1 2 2 2 0 Type II secretion system (T2SS), protein F DUF1664 PF07889.7 gi|385802849|ref|YP_005839249.1| - 2 8.1 8.1 2.6 7.8 0.7 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) DUF972 PF06156.8 gi|385802849|ref|YP_005839249.1| - 3.2 8.1 8.7 4.2 7.7 0.3 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF972) HalX PF08663.5 gi|385802849|ref|YP_005839249.1| - 4.3 7.4 15.0 0.14 12.1 0.5 4.5 4 1 1 5 5 5 0 HalX domain Acetyltransf_9 PF13527.1 gi|385802850|ref|YP_005839250.1| - 0.052 13.3 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AAA PF00004.24 gi|385802851|ref|YP_005839251.1| - 3e-29 101.9 0.0 7.3e-29 100.6 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|385802851|ref|YP_005839251.1| - 6.6e-05 23.0 0.1 0.00059 19.9 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|385802851|ref|YP_005839251.1| - 0.00013 21.6 0.2 0.0007 19.3 0.0 2.3 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|385802851|ref|YP_005839251.1| - 0.00018 20.9 0.0 0.0025 17.2 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_16 PF13191.1 gi|385802851|ref|YP_005839251.1| - 0.00033 20.6 0.7 0.0098 15.8 0.0 2.5 1 1 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|385802851|ref|YP_005839251.1| - 0.0021 17.4 0.5 0.083 12.2 0.0 2.6 2 1 1 3 3 3 1 AAA domain AAA_33 PF13671.1 gi|385802851|ref|YP_005839251.1| - 0.003 17.4 0.0 0.0067 16.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain CDC48_2 PF02933.12 gi|385802851|ref|YP_005839251.1| - 0.01 15.4 0.0 0.022 14.3 0.0 1.6 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), domain 2 AAA_28 PF13521.1 gi|385802851|ref|YP_005839251.1| - 0.011 15.7 0.0 0.043 13.7 0.0 2.0 2 1 0 2 2 2 0 AAA domain RuvB_N PF05496.7 gi|385802851|ref|YP_005839251.1| - 0.012 14.7 0.0 0.027 13.4 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|385802851|ref|YP_005839251.1| - 0.014 15.1 0.0 0.034 13.8 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain Mg_chelatase PF01078.16 gi|385802851|ref|YP_005839251.1| - 0.022 13.9 0.0 0.048 12.8 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|385802851|ref|YP_005839251.1| - 0.03 14.4 0.0 0.067 13.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_17 PF13207.1 gi|385802851|ref|YP_005839251.1| - 0.047 14.5 0.0 0.2 12.5 0.0 2.1 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|385802851|ref|YP_005839251.1| - 0.047 13.1 0.0 0.087 12.3 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain KaiC PF06745.8 gi|385802851|ref|YP_005839251.1| - 0.11 11.5 0.1 0.38 9.8 0.0 1.9 2 0 0 2 2 2 0 KaiC DUF2075 PF09848.4 gi|385802851|ref|YP_005839251.1| - 0.14 11.1 0.0 0.32 9.9 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Arch_ATPase PF01637.13 gi|385802851|ref|YP_005839251.1| - 0.15 11.7 0.1 9.1 5.8 0.0 2.6 2 1 1 3 3 3 0 Archaeal ATPase PQQ_2 PF13360.1 gi|385802852|ref|YP_005839252.1| - 5.1e-09 35.9 4.2 2.1e-05 24.1 0.1 3.4 3 1 1 4 4 4 2 PQQ-like domain PQQ PF01011.16 gi|385802852|ref|YP_005839252.1| - 0.013 14.9 0.0 0.091 12.3 0.0 2.6 2 1 1 3 3 3 0 PQQ enzyme repeat PQQ_3 PF13570.1 gi|385802852|ref|YP_005839252.1| - 0.29 11.4 5.4 1.3 9.3 0.1 3.9 3 1 0 3 3 3 0 PQQ-like domain NPCBM_assoc PF10633.4 gi|385802853|ref|YP_005839253.1| - 0.00041 20.3 7.8 0.22 11.5 0.1 4.5 2 1 1 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF3366 PF11846.3 gi|385802853|ref|YP_005839253.1| - 0.44 10.3 7.5 1.2 9.0 5.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3366) Cadherin-like PF12733.2 gi|385802853|ref|YP_005839253.1| - 0.77 10.0 20.1 2.9 8.2 0.2 5.1 4 2 0 4 4 4 0 Cadherin-like beta sandwich domain DUF2530 PF10745.4 gi|385802854|ref|YP_005839254.1| - 0.012 15.6 0.7 0.067 13.1 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2530) CarboxypepD_reg PF13620.1 gi|385802855|ref|YP_005839255.1| - 1.3e-05 25.1 2.9 9.2e-05 22.4 0.3 6.5 8 0 0 8 8 8 3 Carboxypeptidase regulatory-like domain Cu-oxidase PF00394.17 gi|385802855|ref|YP_005839255.1| - 0.001 19.0 2.1 0.021 14.7 0.2 3.0 2 0 0 2 2 2 1 Multicopper oxidase Wzy_C PF04932.10 gi|385802855|ref|YP_005839255.1| - 0.03 14.1 6.7 0.4 10.4 3.3 3.0 2 1 0 2 2 2 0 O-Antigen ligase zf-UDP PF14569.1 gi|385802855|ref|YP_005839255.1| - 0.092 12.5 0.1 0.29 10.8 0.1 1.9 1 0 0 1 1 1 0 Zinc-binding RING-finger Y_Y_Y PF07495.8 gi|385802855|ref|YP_005839255.1| - 0.13 11.9 4.2 6.4 6.6 0.0 3.4 4 0 0 4 4 4 0 Y_Y_Y domain Tubulin PF00091.20 gi|385802856|ref|YP_005839256.1| - 1.8e-08 34.4 0.0 2.8e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Methyltransf_10 PF05971.7 gi|385802857|ref|YP_005839257.1| - 0.049 12.7 0.0 0.086 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF890) DUF4191 PF13829.1 gi|385802857|ref|YP_005839257.1| - 0.15 11.1 0.3 4.1 6.4 0.5 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4191) NPV_P10 PF05531.7 gi|385802857|ref|YP_005839257.1| - 0.56 10.4 9.7 0.98 9.7 0.9 4.4 2 1 2 4 4 4 0 Nucleopolyhedrovirus P10 protein APG6 PF04111.7 gi|385802858|ref|YP_005839258.1| - 0.013 14.5 2.6 0.019 14.0 1.8 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 TMP_2 PF06791.8 gi|385802858|ref|YP_005839258.1| - 0.26 10.8 7.8 0.81 9.2 5.4 1.8 1 1 0 1 1 1 0 Prophage tail length tape measure protein Spc7 PF08317.6 gi|385802858|ref|YP_005839258.1| - 0.41 9.2 4.8 0.62 8.6 3.3 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Prefoldin_2 PF01920.15 gi|385802858|ref|YP_005839258.1| - 0.87 9.3 5.3 7.5 6.3 0.8 2.3 2 0 0 2 2 2 0 Prefoldin subunit SlyX PF04102.7 gi|385802858|ref|YP_005839258.1| - 6.1 7.2 6.1 29 5.1 0.3 2.5 2 0 0 2 2 2 0 SlyX O-antigen_lig PF13425.1 gi|385802859|ref|YP_005839259.1| - 0.031 14.2 0.1 0.033 14.1 0.0 1.1 1 0 0 1 1 1 0 O-antigen ligase like membrane protein DUF4064 PF13273.1 gi|385802859|ref|YP_005839259.1| - 0.1 12.7 4.0 0.2 11.7 2.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) Coa1 PF08695.5 gi|385802859|ref|YP_005839259.1| - 0.12 11.9 0.9 0.22 11.0 0.6 1.6 1 1 0 1 1 1 0 Cytochrome oxidase complex assembly protein 1 Romo1 PF10247.4 gi|385802859|ref|YP_005839259.1| - 0.26 11.4 4.5 1 9.5 0.4 2.2 2 0 0 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 Tubulin PF00091.20 gi|385802860|ref|YP_005839260.1| - 1.7e-10 41.0 0.0 1.6e-08 34.6 0.0 2.7 2 1 0 2 2 2 2 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|385802860|ref|YP_005839260.1| - 0.017 14.0 0.0 0.027 13.4 0.0 1.4 1 0 0 1 1 1 0 Tubulin like DUF935 PF06074.7 gi|385802861|ref|YP_005839261.1| - 0.2 10.3 10.0 0.01 14.5 2.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF935) Tubulin PF00091.20 gi|385802862|ref|YP_005839262.1| - 3.6e-16 59.6 1.5 4.9e-15 55.9 0.0 2.8 2 1 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain Baculo_PEP_C PF04513.7 gi|385802863|ref|YP_005839263.1| - 0.022 14.6 7.2 0.067 13.0 0.2 2.9 2 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_13 PF13166.1 gi|385802863|ref|YP_005839263.1| - 0.048 12.1 2.4 0.071 11.5 1.7 1.2 1 0 0 1 1 1 0 AAA domain DUF4455 PF14643.1 gi|385802863|ref|YP_005839263.1| - 0.58 8.7 8.2 0.25 9.9 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4455) WXG100 PF06013.7 gi|385802863|ref|YP_005839263.1| - 1.6 8.7 8.5 0.43 10.5 0.3 3.5 2 1 0 3 3 3 0 Proteins of 100 residues with WXG Prefoldin_2 PF01920.15 gi|385802863|ref|YP_005839263.1| - 5.8 6.7 7.0 4 7.2 0.2 3.3 3 1 0 3 3 3 0 Prefoldin subunit MutS_V PF00488.16 gi|385802864|ref|YP_005839264.1| - 7.1e-95 316.8 0.0 1.2e-94 316.1 0.0 1.3 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|385802864|ref|YP_005839264.1| - 1.1e-40 139.5 3.4 7.4e-40 136.9 2.3 2.2 2 1 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|385802864|ref|YP_005839264.1| - 5.1e-26 90.9 0.0 1.1e-25 89.8 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.13 gi|385802864|ref|YP_005839264.1| - 1.8e-23 82.5 1.9 3.9e-23 81.4 1.3 1.6 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|385802864|ref|YP_005839264.1| - 1.7e-18 66.9 0.5 7.4e-18 64.9 0.0 2.3 3 0 0 3 3 3 1 MutS domain II AAA_29 PF13555.1 gi|385802864|ref|YP_005839264.1| - 0.0055 16.1 0.0 0.012 15.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|385802864|ref|YP_005839264.1| - 0.11 12.3 0.0 0.49 10.2 0.0 2.1 1 1 0 1 1 1 0 AAA domain adh_short PF00106.20 gi|385802865|ref|YP_005839265.1| - 9.8e-22 77.6 1.1 1.3e-21 77.2 0.8 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|385802865|ref|YP_005839265.1| - 4.9e-15 55.9 0.0 1.4e-13 51.2 0.0 2.0 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|385802865|ref|YP_005839265.1| - 1.3e-09 37.9 1.0 1.8e-09 37.5 0.7 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|385802865|ref|YP_005839265.1| - 0.0011 18.9 0.3 0.0022 18.0 0.2 1.4 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|385802865|ref|YP_005839265.1| - 0.0028 17.1 0.0 0.0042 16.5 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.14 gi|385802865|ref|YP_005839265.1| - 0.061 12.3 0.3 0.22 10.5 0.1 1.9 1 1 1 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain UPF0257 PF06788.8 gi|385802865|ref|YP_005839265.1| - 0.1 11.7 0.1 0.31 10.2 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0257) AstE_AspA PF04952.9 gi|385802866|ref|YP_005839266.1| - 2.5e-12 46.2 0.0 4e-12 45.6 0.0 1.3 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family EamA PF00892.15 gi|385802867|ref|YP_005839267.1| - 1.2e-17 64.1 17.1 2.9e-12 46.7 1.9 2.4 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|385802867|ref|YP_005839267.1| - 1.1e-08 35.2 18.9 4.9e-06 26.7 2.3 2.8 1 1 0 2 2 2 2 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|385802867|ref|YP_005839267.1| - 0.00014 21.6 0.4 0.00014 21.6 0.3 2.8 3 0 0 3 3 3 1 Uncharacterised protein family UPF0546 ATP-grasp PF02222.17 gi|385802868|ref|YP_005839268.1| - 1.6e-56 190.3 0.0 2.8e-56 189.5 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|385802868|ref|YP_005839268.1| - 3.1e-19 69.4 0.0 5.1e-19 68.7 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|385802868|ref|YP_005839268.1| - 3.8e-10 39.5 0.1 5.8e-09 35.6 0.0 2.4 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.12 gi|385802868|ref|YP_005839268.1| - 3.6e-09 36.2 0.0 1.5e-08 34.2 0.0 1.9 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_Ter PF15632.1 gi|385802868|ref|YP_005839268.1| - 1.2e-07 30.7 0.0 5.4e-06 25.3 0.0 2.0 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon GARS_A PF01071.14 gi|385802868|ref|YP_005839268.1| - 3.5e-06 26.7 0.0 5.7e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_3 PF02655.9 gi|385802868|ref|YP_005839268.1| - 0.00015 21.6 0.0 0.00031 20.6 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|385802868|ref|YP_005839268.1| - 0.00028 20.4 0.0 0.00092 18.7 0.0 1.8 1 1 0 1 1 1 1 RimK-like ATP-grasp domain 2-Hacid_dh_C PF02826.14 gi|385802868|ref|YP_005839268.1| - 0.0021 17.2 0.0 0.0042 16.2 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPSase_L_chain PF00289.17 gi|385802868|ref|YP_005839268.1| - 0.0024 17.9 0.1 0.0049 16.9 0.1 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain RmlD_sub_bind PF04321.12 gi|385802868|ref|YP_005839268.1| - 0.015 14.1 0.1 0.031 13.1 0.1 1.6 1 0 0 1 1 1 0 RmlD substrate binding domain Epimerase PF01370.16 gi|385802868|ref|YP_005839268.1| - 0.022 14.1 0.1 0.051 12.9 0.0 1.5 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family DUF3182 PF11379.3 gi|385802868|ref|YP_005839268.1| - 0.036 12.7 0.0 0.059 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3182) Inositol_P PF00459.20 gi|385802869|ref|YP_005839269.1| - 6.1e-57 192.9 0.0 9.1e-57 192.4 0.0 1.2 1 0 0 1 1 1 1 Inositol monophosphatase family NAD_kinase PF01513.16 gi|385802869|ref|YP_005839269.1| - 6.8e-34 116.9 0.2 1e-33 116.3 0.1 1.2 1 0 0 1 1 1 1 ATP-NAD kinase FBPase PF00316.15 gi|385802869|ref|YP_005839269.1| - 0.00017 20.5 0.0 0.001 18.0 0.0 1.9 2 0 0 2 2 2 1 Fructose-1-6-bisphosphatase Ribonuc_L-PSP PF01042.16 gi|385802870|ref|YP_005839270.1| - 4.8e-26 90.9 0.1 5.3e-26 90.7 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP SBBP PF06739.6 gi|385802870|ref|YP_005839270.1| - 1.6 8.5 4.3 1.6 8.6 1.1 2.4 2 1 1 3 3 3 0 Beta-propeller repeat MFS_1 PF07690.11 gi|385802871|ref|YP_005839271.1| - 2.7e-42 144.7 70.5 9.5e-40 136.3 32.1 1.7 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.15 gi|385802871|ref|YP_005839271.1| - 0.0024 16.0 2.6 0.0044 15.1 1.8 1.5 1 0 0 1 1 1 1 Organic Anion Transporter Polypeptide (OATP) family Sugar_tr PF00083.19 gi|385802871|ref|YP_005839271.1| - 0.0035 15.9 38.5 0.037 12.6 8.4 2.3 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|385802871|ref|YP_005839271.1| - 0.22 11.3 10.6 3.6 7.4 0.7 3.8 3 1 0 3 3 3 0 MFS_1 like family ASC PF00858.19 gi|385802871|ref|YP_005839271.1| - 0.24 10.0 2.1 0.45 9.0 1.4 1.3 1 0 0 1 1 1 0 Amiloride-sensitive sodium channel ABC_tran PF00005.22 gi|385802872|ref|YP_005839272.1| - 6.8e-31 107.3 0.0 1.1e-30 106.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385802872|ref|YP_005839272.1| - 4.1e-13 49.9 0.0 3.2e-06 27.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|385802872|ref|YP_005839272.1| - 1.3e-08 34.3 0.2 4.2e-06 26.1 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|385802872|ref|YP_005839272.1| - 2.4e-05 24.4 0.0 8e-05 22.7 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|385802872|ref|YP_005839272.1| - 2.6e-05 23.4 0.0 0.028 13.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|385802872|ref|YP_005839272.1| - 7.4e-05 22.8 0.7 0.0071 16.3 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|385802872|ref|YP_005839272.1| - 0.00014 21.3 0.0 0.00041 19.8 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|385802872|ref|YP_005839272.1| - 0.00066 18.8 0.0 0.0012 18.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|385802872|ref|YP_005839272.1| - 0.0034 17.1 0.0 3.6 7.4 0.0 2.5 2 0 0 2 2 2 2 Part of AAA domain AAA_23 PF13476.1 gi|385802872|ref|YP_005839272.1| - 0.0044 17.3 0.0 0.0099 16.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|385802872|ref|YP_005839272.1| - 0.0065 15.2 0.0 0.0092 14.7 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_25 PF13481.1 gi|385802872|ref|YP_005839272.1| - 0.0072 15.7 0.1 0.041 13.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|385802872|ref|YP_005839272.1| - 0.0082 16.0 0.0 0.018 14.9 0.0 1.7 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|385802872|ref|YP_005839272.1| - 0.014 14.8 0.0 0.029 13.8 0.0 1.7 1 1 0 1 1 1 0 AAA-like domain DeoRC PF00455.17 gi|385802872|ref|YP_005839272.1| - 0.016 14.8 0.0 0.026 14.1 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain AAA_17 PF13207.1 gi|385802872|ref|YP_005839272.1| - 0.018 15.8 0.2 0.077 13.8 0.2 2.2 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|385802872|ref|YP_005839272.1| - 0.023 15.0 0.0 0.048 13.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|385802872|ref|YP_005839272.1| - 0.12 12.3 0.0 0.33 10.9 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_13 PF13166.1 gi|385802872|ref|YP_005839272.1| - 0.12 10.8 0.0 8 4.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.10 gi|385802872|ref|YP_005839272.1| - 0.15 10.6 0.0 0.8 8.2 0.0 1.9 2 0 0 2 2 2 0 Adenovirus IVa2 protein BPD_transp_1 PF00528.17 gi|385802873|ref|YP_005839273.1| - 9.3e-22 77.4 13.4 9.3e-22 77.4 9.3 5.0 1 1 4 6 6 6 2 Binding-protein-dependent transport system inner membrane component CRPA PF05745.6 gi|385802873|ref|YP_005839273.1| - 7.8 6.2 11.6 0.066 13.0 1.3 2.5 2 0 0 2 2 2 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) BPD_transp_1 PF00528.17 gi|385802874|ref|YP_005839274.1| - 6.1e-16 58.4 16.1 6.1e-16 58.4 11.2 2.7 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4022 PF13214.1 gi|385802874|ref|YP_005839274.1| - 3.6 7.7 11.4 1 9.5 4.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4022) PBP_like_2 PF12849.2 gi|385802875|ref|YP_005839275.1| - 1.1e-34 120.2 4.2 2e-34 119.3 2.8 1.4 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|385802875|ref|YP_005839275.1| - 4.1e-16 58.5 0.1 6.4e-16 57.8 0.1 1.2 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.4 gi|385802875|ref|YP_005839275.1| - 0.0015 18.3 0.9 0.0033 17.2 0.6 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence LPAM_1 PF08139.7 gi|385802875|ref|YP_005839275.1| - 0.37 11.0 1.7 0.82 9.9 1.2 1.6 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Snapin_Pallidin PF14712.1 gi|385802876|ref|YP_005839276.1| - 0.033 14.4 0.1 8.1 6.8 0.0 2.7 2 2 0 2 2 2 0 Snapin/Pallidin Fib_alpha PF08702.5 gi|385802876|ref|YP_005839276.1| - 0.06 13.4 0.0 0.5 10.4 0.0 2.2 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family GCIP PF13324.1 gi|385802876|ref|YP_005839276.1| - 0.067 12.4 0.8 1.5 7.9 0.0 2.3 2 0 0 2 2 2 0 Grap2 and cyclin-D-interacting IncA PF04156.9 gi|385802876|ref|YP_005839276.1| - 0.13 11.8 0.1 4.2 6.9 0.1 2.5 1 1 0 1 1 1 0 IncA protein HTH_Tnp_ISL3 PF13542.1 gi|385802876|ref|YP_005839276.1| - 0.15 11.2 1.1 1.7 7.9 0.0 3.2 4 0 0 4 4 4 0 Helix-turn-helix domain of transposase family ISL3 PSK_trans_fac PF07704.6 gi|385802876|ref|YP_005839276.1| - 1.6 9.4 5.7 5.3 7.7 2.8 2.8 2 1 0 2 2 2 0 Rv0623-like transcription factor Pribosyltran PF00156.22 gi|385802878|ref|YP_005839278.1| - 5.1e-23 81.1 0.4 7e-23 80.7 0.3 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|385802878|ref|YP_005839278.1| - 0.012 14.8 0.1 0.021 14.0 0.1 1.4 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|385802878|ref|YP_005839278.1| - 0.017 14.4 0.1 0.026 13.8 0.1 1.5 1 0 0 1 1 1 0 Phosphoribosyl transferase DUF2114 PF09887.4 gi|385802878|ref|YP_005839278.1| - 0.035 12.4 0.0 0.041 12.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2114) PfkB PF00294.19 gi|385802879|ref|YP_005839279.1| - 3.4e-30 105.2 0.1 2.1e-18 66.5 0.0 2.3 3 0 0 3 3 3 2 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|385802879|ref|YP_005839279.1| - 0.00019 20.7 0.1 0.00098 18.3 0.0 1.9 2 0 0 2 2 2 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|385802879|ref|YP_005839279.1| - 0.045 13.0 0.1 0.11 11.8 0.0 1.6 2 0 0 2 2 2 0 Carbohydrate kinase CopD PF05425.8 gi|385802881|ref|YP_005839281.1| - 0.019 15.1 1.2 0.031 14.4 0.4 1.7 2 0 0 2 2 2 0 Copper resistance protein D DUF4191 PF13829.1 gi|385802881|ref|YP_005839281.1| - 0.14 11.2 0.5 0.17 10.9 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) ABC_tran PF00005.22 gi|385802882|ref|YP_005839282.1| - 2.9e-33 115.0 0.0 4.8e-33 114.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|385802882|ref|YP_005839282.1| - 1.9e-17 63.3 0.7 3.9e-17 62.3 0.5 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|385802882|ref|YP_005839282.1| - 1.1e-07 32.1 0.1 0.00012 22.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|385802882|ref|YP_005839282.1| - 0.00044 20.2 0.4 0.0044 17.0 0.1 2.2 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|385802882|ref|YP_005839282.1| - 0.0018 17.5 0.0 0.0057 15.9 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain FtsK_SpoIIIE PF01580.13 gi|385802882|ref|YP_005839282.1| - 0.0021 17.5 0.0 0.0039 16.6 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|385802882|ref|YP_005839282.1| - 0.0022 18.1 0.2 0.01 15.9 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|385802882|ref|YP_005839282.1| - 0.0094 15.4 0.5 0.021 14.3 0.3 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|385802882|ref|YP_005839282.1| - 0.017 14.6 0.0 0.5 9.7 0.0 2.5 2 1 1 3 3 3 0 AAA-like domain AAA_18 PF13238.1 gi|385802882|ref|YP_005839282.1| - 0.031 14.5 1.1 0.062 13.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.21 gi|385802882|ref|YP_005839282.1| - 0.034 13.6 0.1 8.3 5.8 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF258 PF03193.11 gi|385802882|ref|YP_005839282.1| - 0.042 13.0 0.0 0.073 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|385802882|ref|YP_005839282.1| - 0.043 12.3 0.2 6.5 5.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|385802882|ref|YP_005839282.1| - 0.097 12.5 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|385802882|ref|YP_005839282.1| - 0.13 11.6 0.5 0.51 9.7 0.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|385802882|ref|YP_005839282.1| - 0.13 11.9 0.1 3.3 7.4 0.2 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|385802882|ref|YP_005839282.1| - 0.15 11.7 0.7 0.37 10.4 0.4 1.8 2 0 0 2 2 2 0 NACHT domain UPF0079 PF02367.12 gi|385802882|ref|YP_005839282.1| - 0.16 11.5 0.3 0.34 10.5 0.2 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ABC_tran PF00005.22 gi|385802883|ref|YP_005839283.1| - 1.3e-27 96.7 0.0 2e-27 96.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|385802883|ref|YP_005839283.1| - 1.5e-20 73.2 0.3 5.3e-20 71.5 0.2 2.0 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|385802883|ref|YP_005839283.1| - 2.6e-08 34.1 0.2 5.7e-06 26.5 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|385802883|ref|YP_005839283.1| - 0.00014 21.1 0.0 0.00035 19.8 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|385802883|ref|YP_005839283.1| - 0.00092 18.7 0.1 0.015 14.7 0.0 2.1 1 1 1 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|385802883|ref|YP_005839283.1| - 0.0024 17.8 0.0 0.0047 16.9 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|385802883|ref|YP_005839283.1| - 0.0045 16.4 0.0 0.0096 15.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|385802883|ref|YP_005839283.1| - 0.016 15.3 0.1 0.73 9.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|385802883|ref|YP_005839283.1| - 0.023 13.7 0.1 0.094 11.7 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain ATP-synt_ab PF00006.20 gi|385802883|ref|YP_005839283.1| - 0.036 13.5 0.0 0.063 12.7 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF87 PF01935.12 gi|385802883|ref|YP_005839283.1| - 0.058 13.1 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF87 Sigma54_activat PF00158.21 gi|385802883|ref|YP_005839283.1| - 0.13 11.7 0.1 0.5 9.8 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain AIG1 PF04548.11 gi|385802883|ref|YP_005839283.1| - 0.27 10.3 1.4 1.2 8.2 0.3 2.4 3 0 0 3 3 3 0 AIG1 family BPD_transp_1 PF00528.17 gi|385802884|ref|YP_005839284.1| - 1.2e-19 70.5 14.8 1.2e-19 70.5 10.3 2.7 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|385802884|ref|YP_005839284.1| - 4.5e-06 25.9 1.5 0.00014 21.1 0.0 3.5 2 1 1 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C Exo_endo_phos_2 PF14529.1 gi|385802884|ref|YP_005839284.1| - 0.06 12.9 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 Endonuclease-reverse transcriptase FliP PF00813.15 gi|385802884|ref|YP_005839284.1| - 0.28 10.8 3.5 2.3 7.8 0.3 2.9 3 0 0 3 3 3 0 FliP family BPD_transp_1 PF00528.17 gi|385802885|ref|YP_005839285.1| - 1.8e-29 102.6 16.1 1.8e-29 102.6 11.1 2.6 2 2 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|385802886|ref|YP_005839286.1| - 5.9e-60 203.0 7.2 1.1e-47 162.6 1.4 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|385802886|ref|YP_005839286.1| - 3.3e-05 23.5 1.1 6.1e-05 22.7 0.8 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|385802886|ref|YP_005839286.1| - 0.0081 15.3 2.0 0.015 14.4 1.4 1.4 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal MFS_1 PF07690.11 gi|385802887|ref|YP_005839287.1| - 6e-42 143.6 60.7 1.3e-30 106.3 21.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily G_glu_transpept PF01019.16 gi|385802888|ref|YP_005839288.1| - 5.1e-149 497.0 0.0 5.8e-149 496.8 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase UPF0104 PF03706.8 gi|385802889|ref|YP_005839289.1| - 8.5e-35 120.4 27.5 1.3e-34 119.8 19.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Glycos_transf_2 PF00535.21 gi|385802889|ref|YP_005839289.1| - 2.8e-26 92.1 0.0 4.3e-26 91.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|385802889|ref|YP_005839289.1| - 2.5e-10 40.5 0.1 5.6e-10 39.3 0.1 1.5 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|385802889|ref|YP_005839289.1| - 1.7e-05 24.0 0.0 2.4e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|385802889|ref|YP_005839289.1| - 0.012 15.9 0.0 0.023 14.9 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|385802889|ref|YP_005839289.1| - 1 8.9 5.5 0.21 11.2 0.9 1.9 2 0 0 2 2 2 0 Glycosyl transferase family group 2 NTR2 PF15458.1 gi|385802890|ref|YP_005839290.1| - 0.033 13.4 0.4 0.044 13.0 0.3 1.2 1 0 0 1 1 1 0 Nineteen complex-related protein 2 RepL PF05732.6 gi|385802890|ref|YP_005839290.1| - 0.049 12.8 0.1 0.066 12.4 0.1 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_6 PF01418.12 gi|385802890|ref|YP_005839290.1| - 0.061 13.0 0.1 0.099 12.3 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family RseA_C PF03873.8 gi|385802890|ref|YP_005839290.1| - 0.084 12.7 0.8 0.14 12.0 0.6 1.4 1 0 0 1 1 1 0 Anti sigma-E protein RseA, C-terminal domain HTH_24 PF13412.1 gi|385802891|ref|YP_005839291.1| - 1.3e-09 37.2 0.0 6e-06 25.5 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|385802891|ref|YP_005839291.1| - 3.9e-08 33.2 0.0 0.012 15.6 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|385802891|ref|YP_005839291.1| - 5.4e-08 32.5 0.0 0.0051 16.5 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|385802891|ref|YP_005839291.1| - 9e-08 31.6 0.0 0.0014 18.2 0.0 2.2 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|385802891|ref|YP_005839291.1| - 2.4e-06 27.0 0.1 8.2e-05 22.1 0.0 2.3 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|385802891|ref|YP_005839291.1| - 1.7e-05 24.3 0.0 7.4e-05 22.3 0.0 2.0 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|385802891|ref|YP_005839291.1| - 4.6e-05 23.0 0.0 0.0032 17.1 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|385802891|ref|YP_005839291.1| - 0.00087 18.8 0.1 0.0018 17.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.14 gi|385802891|ref|YP_005839291.1| - 0.0022 17.8 0.0 0.0049 16.7 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain RPA_C PF08784.6 gi|385802891|ref|YP_005839291.1| - 0.0096 16.3 0.5 0.046 14.1 0.0 2.0 2 0 0 2 2 2 1 Replication protein A C terminal HTH_AsnC-type PF13404.1 gi|385802891|ref|YP_005839291.1| - 0.01 15.3 0.1 0.029 13.9 0.1 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|385802891|ref|YP_005839291.1| - 0.01 15.5 0.0 0.023 14.4 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF2250 PF10007.4 gi|385802891|ref|YP_005839291.1| - 0.015 15.1 0.0 0.13 12.2 0.0 2.3 2 1 1 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2250) EAP30 PF04157.11 gi|385802891|ref|YP_005839291.1| - 0.021 13.9 0.0 0.064 12.4 0.0 1.7 2 0 0 2 2 2 0 EAP30/Vps36 family RP-C PF03428.8 gi|385802891|ref|YP_005839291.1| - 0.12 11.8 0.2 6.7 6.1 0.1 2.2 2 0 0 2 2 2 0 Replication protein C N-terminal domain Band_7 PF01145.20 gi|385802892|ref|YP_005839292.1| - 8.9e-39 133.2 3.1 8.9e-39 133.2 2.1 2.4 2 1 1 3 3 3 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|385802892|ref|YP_005839292.1| - 3e-05 23.6 0.7 6.5e-05 22.5 0.2 1.8 2 0 0 2 2 2 1 SPFH domain-Band 7 family DEPP PF15343.1 gi|385802892|ref|YP_005839292.1| - 0.92 9.0 5.0 5.8 6.4 0.0 2.2 2 0 0 2 2 2 0 Decidual protein induced by progesterone family ABC_tran PF00005.22 gi|385802893|ref|YP_005839293.1| - 5.8e-27 94.6 0.0 9.9e-27 93.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385802893|ref|YP_005839293.1| - 2e-16 60.8 0.0 4.5e-10 39.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|385802893|ref|YP_005839293.1| - 0.00046 20.5 0.0 0.00084 19.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|385802893|ref|YP_005839293.1| - 0.00063 19.2 0.2 0.0015 18.0 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|385802893|ref|YP_005839293.1| - 0.0018 17.5 0.0 0.15 11.2 0.0 2.3 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.1 gi|385802893|ref|YP_005839293.1| - 0.0019 17.8 0.1 0.0089 15.6 0.0 2.1 1 1 1 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|385802893|ref|YP_005839293.1| - 0.004 16.7 0.2 0.0082 15.7 0.1 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 MMR_HSR1 PF01926.18 gi|385802893|ref|YP_005839293.1| - 0.0061 16.5 0.1 0.02 14.8 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA PF00004.24 gi|385802893|ref|YP_005839293.1| - 0.0082 16.3 0.1 0.026 14.7 0.1 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|385802893|ref|YP_005839293.1| - 0.0082 16.1 0.2 0.028 14.4 0.1 2.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_15 PF13175.1 gi|385802893|ref|YP_005839293.1| - 0.014 14.4 0.0 3.1 6.7 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain SbcCD_C PF13558.1 gi|385802893|ref|YP_005839293.1| - 0.015 15.1 0.0 0.15 11.9 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit IstB_IS21 PF01695.12 gi|385802893|ref|YP_005839293.1| - 0.02 14.3 0.0 0.43 9.9 0.0 2.4 2 1 1 3 3 3 0 IstB-like ATP binding protein AAA_33 PF13671.1 gi|385802893|ref|YP_005839293.1| - 0.023 14.5 0.5 0.044 13.6 0.3 1.7 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|385802893|ref|YP_005839293.1| - 0.035 13.3 0.1 0.06 12.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|385802893|ref|YP_005839293.1| - 0.05 13.5 0.2 0.1 12.5 0.1 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|385802893|ref|YP_005839293.1| - 0.083 12.3 0.4 0.17 11.3 0.3 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|385802893|ref|YP_005839293.1| - 0.092 12.8 0.1 0.18 11.9 0.1 1.6 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|385802893|ref|YP_005839293.1| - 0.11 13.0 0.1 0.25 11.8 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein ABC2_membrane PF01061.19 gi|385802894|ref|YP_005839294.1| - 1.7e-20 73.0 17.8 2.6e-20 72.5 12.3 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|385802894|ref|YP_005839294.1| - 5.3e-08 32.2 15.4 5.3e-08 32.2 10.7 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|385802894|ref|YP_005839294.1| - 0.00014 21.0 24.0 0.00021 20.5 16.6 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|385802894|ref|YP_005839294.1| - 0.0002 20.3 11.5 0.0002 20.3 8.0 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein OppC_N PF12911.2 gi|385802894|ref|YP_005839294.1| - 0.12 11.7 0.4 0.12 11.7 0.3 3.2 4 0 0 4 4 4 0 N-terminal TM domain of oligopeptide transport permease C ABC2_membrane_5 PF13346.1 gi|385802894|ref|YP_005839294.1| - 0.26 10.5 16.0 1.3 8.2 11.1 2.2 1 1 0 1 1 1 0 ABC-2 family transporter protein Aldolase PF01081.14 gi|385802895|ref|YP_005839295.1| - 1.7e-41 141.5 1.2 2e-41 141.3 0.8 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase DHO_dh PF01180.16 gi|385802895|ref|YP_005839295.1| - 0.0025 16.8 6.2 0.9 8.4 0.5 3.1 2 1 1 3 3 3 3 Dihydroorotate dehydrogenase TMP-TENI PF02581.12 gi|385802895|ref|YP_005839295.1| - 0.0026 16.9 0.5 0.065 12.3 0.1 2.7 2 2 1 3 3 3 1 Thiamine monophosphate synthase/TENI PcrB PF01884.12 gi|385802895|ref|YP_005839295.1| - 0.013 14.7 0.5 0.9 8.7 0.0 3.0 3 1 1 4 4 4 0 PcrB family FMN_dh PF01070.13 gi|385802895|ref|YP_005839295.1| - 0.019 13.8 0.3 0.28 9.9 0.2 2.1 1 1 0 1 1 1 0 FMN-dependent dehydrogenase NMO PF03060.10 gi|385802895|ref|YP_005839295.1| - 0.08 12.0 1.6 0.41 9.7 1.1 2.1 1 1 0 1 1 1 0 Nitronate monooxygenase bPH_2 PF03703.9 gi|385802896|ref|YP_005839296.1| - 1.3e-47 159.6 12.9 4.6e-20 71.4 0.5 4.1 4 0 0 4 4 4 3 Bacterial PH domain bPH_4 PF06713.6 gi|385802896|ref|YP_005839296.1| - 0.0035 17.1 0.0 0.86 9.5 0.0 3.1 3 0 0 3 3 3 1 Bacterial PH domain Coiled-coil_56 PF09813.4 gi|385802896|ref|YP_005839296.1| - 0.1 12.6 0.1 0.98 9.4 0.0 2.4 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 56 bPH_2 PF03703.9 gi|385802897|ref|YP_005839297.1| - 1.8e-19 69.5 0.3 2.5e-19 69.0 0.2 1.2 1 0 0 1 1 1 1 Bacterial PH domain DUF1469 PF07332.6 gi|385802897|ref|YP_005839297.1| - 0.28 10.9 3.5 0.5 10.1 2.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) CopD PF05425.8 gi|385802899|ref|YP_005839299.1| - 1.3e-06 28.5 7.8 1.3e-06 28.5 5.4 1.5 2 0 0 2 2 2 1 Copper resistance protein D DUF2306 PF10067.4 gi|385802899|ref|YP_005839299.1| - 7.3 6.7 7.5 1.9 8.6 1.5 2.2 1 1 1 2 2 2 0 Predicted membrane protein (DUF2306) DUF2071 PF09844.4 gi|385802900|ref|YP_005839300.1| - 8e-70 234.6 0.0 9e-70 234.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.6 gi|385802900|ref|YP_005839300.1| - 0.0007 19.0 0.1 0.0014 18.0 0.0 1.4 1 1 1 2 2 2 1 Acetoacetate decarboxylase (ADC) CENP-F_leu_zip PF10473.4 gi|385802901|ref|YP_005839301.1| - 0.00013 21.8 2.2 0.00021 21.1 1.1 1.5 1 1 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Apolipoprotein PF01442.13 gi|385802901|ref|YP_005839301.1| - 0.0011 18.5 0.3 0.0012 18.3 0.2 1.3 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain TBPIP PF07106.8 gi|385802901|ref|YP_005839301.1| - 0.018 14.5 0.7 0.027 14.0 0.5 1.3 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DASH_Dad2 PF08654.5 gi|385802901|ref|YP_005839301.1| - 0.022 14.7 2.1 0.022 14.7 1.4 1.9 2 1 0 2 2 2 0 DASH complex subunit Dad2 Spc7 PF08317.6 gi|385802901|ref|YP_005839301.1| - 0.022 13.4 0.9 0.027 13.1 0.6 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF4164 PF13747.1 gi|385802901|ref|YP_005839301.1| - 0.024 14.7 2.2 0.024 14.7 1.5 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) Paxillin PF03535.8 gi|385802901|ref|YP_005839301.1| - 0.024 14.4 1.0 0.04 13.7 0.4 1.6 1 1 0 1 1 1 0 Paxillin family Cep57_MT_bd PF06657.8 gi|385802901|ref|YP_005839301.1| - 0.035 14.0 0.1 0.068 13.1 0.1 1.6 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 GTPase_Cys_C PF12631.2 gi|385802901|ref|YP_005839301.1| - 0.047 14.1 1.0 0.098 13.0 0.3 1.9 2 0 0 2 2 2 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE DUF641 PF04859.7 gi|385802901|ref|YP_005839301.1| - 0.053 13.2 0.1 0.11 12.3 0.1 1.5 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) BLOC1_2 PF10046.4 gi|385802901|ref|YP_005839301.1| - 0.061 13.4 1.7 0.15 12.1 1.1 1.7 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Med9 PF07544.8 gi|385802901|ref|YP_005839301.1| - 0.063 13.0 2.1 0.14 11.9 1.0 1.9 2 0 0 2 2 1 0 RNA polymerase II transcription mediator complex subunit 9 Baculo_PEP_C PF04513.7 gi|385802901|ref|YP_005839301.1| - 0.067 13.0 1.9 0.13 12.0 0.9 1.9 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus COG2 PF06148.6 gi|385802901|ref|YP_005839301.1| - 0.074 12.9 1.2 0.18 11.6 0.5 1.8 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 ALIX_LYPXL_bnd PF13949.1 gi|385802901|ref|YP_005839301.1| - 0.083 11.8 10.7 0.032 13.1 3.6 2.0 1 1 1 2 2 2 0 ALIX V-shaped domain binding to HIV Fzo_mitofusin PF04799.8 gi|385802901|ref|YP_005839301.1| - 0.093 12.1 0.2 0.17 11.2 0.1 1.4 1 0 0 1 1 1 0 fzo-like conserved region Rho_Binding PF08912.6 gi|385802901|ref|YP_005839301.1| - 0.096 12.9 0.5 0.19 12.0 0.3 1.5 1 0 0 1 1 1 0 Rho Binding NPV_P10 PF05531.7 gi|385802901|ref|YP_005839301.1| - 0.13 12.5 3.2 0.45 10.8 2.2 2.1 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Prefoldin_2 PF01920.15 gi|385802901|ref|YP_005839301.1| - 0.22 11.2 5.3 0.97 9.2 1.5 2.4 1 1 1 2 2 2 0 Prefoldin subunit Reo_sigmaC PF04582.7 gi|385802901|ref|YP_005839301.1| - 0.24 10.5 7.7 0.19 10.8 4.4 1.5 1 1 0 1 1 1 0 Reovirus sigma C capsid protein SlyX PF04102.7 gi|385802901|ref|YP_005839301.1| - 0.31 11.4 4.2 1 9.7 2.0 2.4 1 1 1 2 2 2 0 SlyX DUF1664 PF07889.7 gi|385802901|ref|YP_005839301.1| - 0.37 10.5 4.0 1.7 8.4 2.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) TMF_DNA_bd PF12329.3 gi|385802901|ref|YP_005839301.1| - 0.51 10.1 6.0 0.25 11.1 1.3 2.4 3 0 0 3 3 3 0 TATA element modulatory factor 1 DNA binding DUF948 PF06103.6 gi|385802901|ref|YP_005839301.1| - 0.69 9.8 4.9 1.4 8.7 1.4 2.6 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) FlaC_arch PF05377.6 gi|385802901|ref|YP_005839301.1| - 2.2 8.2 9.4 0.92 9.4 1.6 3.3 3 1 1 4 4 4 0 Flagella accessory protein C (FlaC) FliD_N PF02465.13 gi|385802901|ref|YP_005839301.1| - 4.1 7.8 8.4 1.2 9.5 3.2 1.9 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus WW PF00397.21 gi|385802902|ref|YP_005839302.1| - 0.075 12.9 0.2 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 WW domain DUF3797 PF12677.2 gi|385802902|ref|YP_005839302.1| - 0.076 12.6 0.1 0.13 11.9 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3797) DUF393 PF04134.7 gi|385802902|ref|YP_005839302.1| - 0.08 14.0 0.1 0.14 13.3 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function, DUF393 SRP19 PF01922.12 gi|385802903|ref|YP_005839303.1| - 5.5e-26 90.9 0.0 6.1e-26 90.8 0.0 1.0 1 0 0 1 1 1 1 SRP19 protein PurS PF02700.9 gi|385802903|ref|YP_005839303.1| - 0.072 13.0 0.1 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosylformylglycinamidine (FGAM) synthase Gar1 PF04410.9 gi|385802904|ref|YP_005839304.1| - 1.1e-05 24.9 0.0 1.1e-05 24.9 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region DUF1119 PF06550.6 gi|385802905|ref|YP_005839305.1| - 1e-82 277.5 21.4 1.9e-82 276.5 14.8 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1119) Peptidase_A22B PF04258.8 gi|385802905|ref|YP_005839305.1| - 9e-05 22.0 8.7 0.0029 17.0 0.5 3.0 2 1 0 3 3 3 2 Signal peptide peptidase Presenilin PF01080.12 gi|385802905|ref|YP_005839305.1| - 0.023 13.5 6.6 0.11 11.2 1.2 2.5 2 2 0 2 2 2 0 Presenilin SpoIIIAH PF12685.2 gi|385802905|ref|YP_005839305.1| - 0.081 12.4 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 SpoIIIAH-like protein NYN PF01936.13 gi|385802906|ref|YP_005839306.1| - 3.2e-37 128.0 0.1 3.9e-37 127.7 0.0 1.0 1 0 0 1 1 1 1 NYN domain DUF2529 PF10740.4 gi|385802906|ref|YP_005839306.1| - 0.048 13.0 0.1 0.12 11.7 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2529) FMO-like PF00743.14 gi|385802906|ref|YP_005839306.1| - 0.11 10.6 0.0 0.14 10.3 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like DHDPS PF00701.17 gi|385802907|ref|YP_005839307.1| - 1.2e-89 299.7 0.0 1.5e-89 299.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family PEP_mutase PF13714.1 gi|385802907|ref|YP_005839307.1| - 0.00079 18.7 0.0 0.0011 18.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ThiG PF05690.9 gi|385802907|ref|YP_005839307.1| - 0.0046 16.0 0.1 0.0079 15.3 0.0 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG Peripla_BP_1 PF00532.16 gi|385802907|ref|YP_005839307.1| - 0.071 12.3 0.1 0.53 9.4 0.0 2.0 2 0 0 2 2 2 0 Periplasmic binding proteins and sugar binding domain of LacI family DapB_C PF05173.9 gi|385802908|ref|YP_005839308.1| - 1.3e-37 128.4 0.1 1.9e-37 127.9 0.1 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|385802908|ref|YP_005839308.1| - 1.3e-20 73.5 0.0 2.8e-20 72.4 0.0 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|385802908|ref|YP_005839308.1| - 0.036 14.3 0.2 0.14 12.4 0.1 1.9 1 1 1 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain Bromo_TP PF07524.8 gi|385802908|ref|YP_005839308.1| - 0.08 12.6 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Bromodomain associated THDPS_N_2 PF14805.1 gi|385802909|ref|YP_005839309.1| - 1.3e-17 63.4 0.0 1.9e-17 62.8 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.19 gi|385802909|ref|YP_005839309.1| - 4.3e-13 48.1 8.4 1.2e-05 24.6 1.7 3.3 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|385802909|ref|YP_005839309.1| - 0.057 12.9 13.1 0.18 11.4 1.1 3.8 1 1 2 4 4 4 0 Hexapeptide repeat of succinyl-transferase Orn_Arg_deC_N PF02784.11 gi|385802910|ref|YP_005839310.1| - 9.5e-40 136.3 0.0 1.4e-39 135.7 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|385802910|ref|YP_005839310.1| - 3.3e-20 71.9 0.0 6.2e-20 71.0 0.0 1.5 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DAP_epimerase PF01678.14 gi|385802911|ref|YP_005839311.1| - 1.5e-42 144.3 2.6 5.9e-21 74.6 0.1 2.2 2 0 0 2 2 2 2 Diaminopimelate epimerase PhzC-PhzF PF02567.11 gi|385802911|ref|YP_005839311.1| - 1.7e-05 24.1 0.6 4.2e-05 22.9 0.2 1.5 1 1 1 2 2 2 1 Phenazine biosynthesis-like protein Pro_racemase PF05544.6 gi|385802911|ref|YP_005839311.1| - 0.0017 17.2 2.8 0.16 10.7 0.1 2.2 2 0 0 2 2 2 2 Proline racemase Peptidase_M20 PF01546.23 gi|385802912|ref|YP_005839312.1| - 3.2e-22 78.9 8.1 5.6e-22 78.1 5.6 1.4 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|385802912|ref|YP_005839312.1| - 1.8e-18 66.3 0.1 3.3e-18 65.4 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain RNase_P_p30 PF01876.11 gi|385802913|ref|YP_005839313.1| - 1e-31 109.1 0.0 1.9e-31 108.3 0.0 1.4 1 0 0 1 1 1 1 RNase P subunit p30 Methyltransf_11 PF08241.7 gi|385802914|ref|YP_005839314.1| - 2.4e-13 50.4 0.0 4.4e-13 49.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385802914|ref|YP_005839314.1| - 4e-13 49.2 0.1 5.4e-13 48.7 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385802914|ref|YP_005839314.1| - 2.3e-12 47.4 0.2 4.7e-12 46.4 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|385802914|ref|YP_005839314.1| - 3.7e-10 40.0 0.1 9.2e-10 38.7 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|385802914|ref|YP_005839314.1| - 3.5e-09 36.1 0.2 6.1e-09 35.3 0.1 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|385802914|ref|YP_005839314.1| - 1.4e-08 35.0 0.1 2.3e-08 34.4 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|385802914|ref|YP_005839314.1| - 3.5e-05 23.8 0.1 4.7e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|385802914|ref|YP_005839314.1| - 6.1e-05 22.7 0.0 9.2e-05 22.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|385802914|ref|YP_005839314.1| - 0.00033 20.0 0.2 0.00047 19.5 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|385802914|ref|YP_005839314.1| - 0.00037 19.6 0.0 0.00044 19.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.8 gi|385802914|ref|YP_005839314.1| - 0.0022 17.1 0.2 0.0032 16.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_2 PF00891.13 gi|385802914|ref|YP_005839314.1| - 0.0028 16.9 0.1 0.0033 16.6 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_32 PF13679.1 gi|385802914|ref|YP_005839314.1| - 0.0076 15.9 0.0 0.01 15.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.7 gi|385802914|ref|YP_005839314.1| - 0.018 13.8 0.0 0.023 13.5 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase UPF0020 PF01170.13 gi|385802914|ref|YP_005839314.1| - 0.032 13.7 0.3 0.052 13.1 0.2 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_4 PF02390.12 gi|385802914|ref|YP_005839314.1| - 0.052 12.6 0.0 0.068 12.2 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase tRNA_U5-meth_tr PF05958.6 gi|385802914|ref|YP_005839314.1| - 0.054 12.1 0.0 0.073 11.7 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase PCMT PF01135.14 gi|385802914|ref|YP_005839314.1| - 0.067 12.7 0.0 0.094 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.14 gi|385802914|ref|YP_005839314.1| - 0.09 12.7 0.1 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase CMAS PF02353.15 gi|385802914|ref|YP_005839314.1| - 0.15 11.0 0.0 0.24 10.4 0.0 1.3 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase RNase_P_Rpp14 PF01900.14 gi|385802915|ref|YP_005839315.1| - 3.6e-23 81.5 0.0 4.8e-23 81.1 0.0 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family Proteasome PF00227.21 gi|385802916|ref|YP_005839316.1| - 3.9e-58 195.8 0.0 5.3e-58 195.4 0.0 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|385802916|ref|YP_005839316.1| - 2.6e-14 52.1 0.1 4.4e-14 51.4 0.1 1.4 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature MarR PF01047.17 gi|385802917|ref|YP_005839317.1| - 1.2e-05 24.8 0.0 1.7e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.7 gi|385802917|ref|YP_005839317.1| - 0.0021 17.8 0.0 0.0029 17.4 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR_2 PF12802.2 gi|385802917|ref|YP_005839317.1| - 0.051 13.2 0.0 0.082 12.5 0.0 1.4 1 0 0 1 1 1 0 MarR family NRDE PF05742.7 gi|385802918|ref|YP_005839318.1| - 8.6e-25 87.5 0.0 1.2e-24 87.0 0.0 1.2 1 0 0 1 1 1 1 NRDE protein HTH_12 PF08461.5 gi|385802919|ref|YP_005839319.1| - 0.0053 16.4 0.0 0.011 15.4 0.0 1.7 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain Phage_rep_org_N PF09681.5 gi|385802919|ref|YP_005839319.1| - 0.02 14.4 0.0 0.035 13.6 0.0 1.5 1 1 1 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) MotA_activ PF09114.5 gi|385802919|ref|YP_005839319.1| - 0.059 13.1 0.0 0.067 12.9 0.0 1.2 1 0 0 1 1 1 0 Transcription factor MotA, activation domain Ribosomal_S19e PF01090.14 gi|385802919|ref|YP_005839319.1| - 0.071 12.5 0.0 0.27 10.6 0.0 1.8 1 1 0 1 1 1 0 Ribosomal protein S19e HTH_15 PF12324.3 gi|385802919|ref|YP_005839319.1| - 0.088 12.4 0.0 0.19 11.3 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase HSBP1 PF06825.7 gi|385802919|ref|YP_005839319.1| - 0.25 10.9 3.0 3.3 7.3 0.1 2.5 2 1 0 2 2 2 0 Heat shock factor binding protein 1 Trp_halogenase PF04820.9 gi|385802920|ref|YP_005839320.1| - 3.1e-11 42.5 3.4 7e-08 31.5 0.0 2.3 2 0 0 2 2 2 2 Tryptophan halogenase DAO PF01266.19 gi|385802920|ref|YP_005839320.1| - 5.4e-10 38.6 5.7 4.2e-06 25.9 0.3 2.5 2 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|385802920|ref|YP_005839320.1| - 1.9e-09 36.9 4.2 1.5e-07 30.6 1.2 2.5 3 0 0 3 3 2 2 FAD binding domain FAD_binding_3 PF01494.14 gi|385802920|ref|YP_005839320.1| - 9.9e-09 34.6 0.9 0.003 16.6 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|385802920|ref|YP_005839320.1| - 5.8e-08 32.2 7.8 0.0001 21.5 3.8 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|385802920|ref|YP_005839320.1| - 3.8e-07 29.3 0.3 3.8e-07 29.3 0.2 1.8 2 0 0 2 2 1 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|385802920|ref|YP_005839320.1| - 7.2e-07 29.2 3.9 7.8e-07 29.1 0.2 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|385802920|ref|YP_005839320.1| - 9.3e-07 29.0 0.0 1.8e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|385802920|ref|YP_005839320.1| - 1.6e-06 27.3 2.8 3.4e-06 26.3 0.1 2.6 2 1 1 3 3 3 1 Thi4 family HI0933_like PF03486.9 gi|385802920|ref|YP_005839320.1| - 4.4e-05 22.1 1.4 4.4e-05 22.1 1.0 1.9 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|385802920|ref|YP_005839320.1| - 0.00018 21.4 0.9 0.00018 21.4 0.6 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|385802920|ref|YP_005839320.1| - 0.00032 21.0 10.6 0.0042 17.4 0.4 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|385802920|ref|YP_005839320.1| - 0.0025 17.5 0.1 0.0051 16.4 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|385802920|ref|YP_005839320.1| - 0.011 15.1 0.3 0.023 14.1 0.1 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Mqo PF06039.10 gi|385802920|ref|YP_005839320.1| - 0.024 12.8 0.1 0.042 12.0 0.1 1.3 1 0 0 1 1 1 0 Malate:quinone oxidoreductase (Mqo) AlaDh_PNT_C PF01262.16 gi|385802920|ref|YP_005839320.1| - 0.031 13.8 0.5 0.031 13.8 0.3 1.7 2 0 0 2 2 1 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.7 gi|385802920|ref|YP_005839320.1| - 0.061 12.2 5.8 0.083 11.7 1.0 2.4 3 0 0 3 3 3 0 Lycopene cyclase protein ThiF PF00899.16 gi|385802920|ref|YP_005839320.1| - 0.13 12.0 0.6 0.41 10.4 0.1 1.9 2 0 0 2 2 2 0 ThiF family GDI PF00996.13 gi|385802920|ref|YP_005839320.1| - 0.13 10.5 0.2 9.5 4.4 0.1 2.1 2 0 0 2 2 2 0 GDP dissociation inhibitor PGM_PMM_I PF02878.11 gi|385802921|ref|YP_005839321.1| - 1e-36 125.4 0.8 2.6e-35 120.8 0.1 2.4 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|385802921|ref|YP_005839321.1| - 7.8e-23 80.7 0.0 1.7e-22 79.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|385802921|ref|YP_005839321.1| - 7.1e-10 38.7 0.0 2.4e-09 37.0 0.0 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|385802921|ref|YP_005839321.1| - 0.035 14.1 0.0 0.071 13.1 0.0 1.5 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Acylphosphatase PF00708.13 gi|385802922|ref|YP_005839322.1| - 9.2e-27 92.9 0.0 9.8e-27 92.8 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase GHMP_kinases_N PF00288.21 gi|385802924|ref|YP_005839324.1| - 1.8e-05 24.7 5.2 7.7e-05 22.6 1.5 2.4 1 1 1 2 2 2 2 GHMP kinases N terminal domain Pyr_redox PF00070.22 gi|385802925|ref|YP_005839325.1| - 2.3e-11 43.9 0.1 1.5e-07 31.7 0.0 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|385802925|ref|YP_005839325.1| - 5.1e-07 29.7 1.0 0.00016 21.6 0.0 2.3 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|385802925|ref|YP_005839325.1| - 0.00025 21.0 0.1 1.1 9.3 0.0 3.3 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|385802925|ref|YP_005839325.1| - 0.00036 20.6 0.2 0.023 14.7 0.2 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|385802925|ref|YP_005839325.1| - 0.00042 20.1 0.8 0.23 11.2 0.0 2.9 3 0 0 3 3 3 2 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|385802925|ref|YP_005839325.1| - 0.0013 17.7 0.1 0.46 9.3 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.19 gi|385802925|ref|YP_005839325.1| - 0.0028 16.5 2.8 0.78 8.5 0.4 3.2 2 1 0 3 3 3 1 FAD dependent oxidoreductase TrkA_N PF02254.13 gi|385802925|ref|YP_005839325.1| - 0.0043 17.0 0.2 1.5 8.8 0.0 2.7 2 0 0 2 2 2 1 TrkA-N domain UDPG_MGDP_dh_N PF03721.9 gi|385802925|ref|YP_005839325.1| - 0.039 13.3 0.0 0.12 11.7 0.0 1.9 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thi4 PF01946.12 gi|385802925|ref|YP_005839325.1| - 0.057 12.5 0.2 1.1 8.2 0.0 2.4 2 0 0 2 2 2 0 Thi4 family MGS PF02142.17 gi|385802926|ref|YP_005839326.1| - 6.2e-16 58.1 0.0 8.2e-16 57.7 0.0 1.2 1 0 0 1 1 1 1 MGS-like domain DUF371 PF04027.8 gi|385802927|ref|YP_005839327.1| - 3.2e-53 178.9 0.9 3.8e-53 178.6 0.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF371) TPR_MLP1_2 PF07926.7 gi|385802928|ref|YP_005839328.1| - 0.00048 19.8 13.7 0.00048 19.8 9.5 3.5 2 1 0 2 2 2 1 TPR/MLP1/MLP2-like protein AAA_27 PF13514.1 gi|385802928|ref|YP_005839328.1| - 0.21 9.2 50.5 0.26 8.8 35.0 1.1 1 0 0 1 1 1 0 AAA domain COG2 PF06148.6 gi|385802928|ref|YP_005839328.1| - 0.79 9.5 34.3 0.033 14.0 2.1 4.5 1 1 3 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF948 PF06103.6 gi|385802928|ref|YP_005839328.1| - 1.2 9.0 20.3 3.5 7.5 1.8 4.2 1 1 3 4 4 4 0 Bacterial protein of unknown function (DUF948) DUF373 PF04123.8 gi|385802929|ref|YP_005839329.1| - 8.6e-113 376.8 8.5 9.8e-113 376.6 5.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF3185 PF11381.3 gi|385802929|ref|YP_005839329.1| - 0.022 14.4 4.6 2.2 8.1 0.0 3.3 3 1 0 3 3 3 0 Protein of unknown function (DUF3185) DUF4077 PF13295.1 gi|385802930|ref|YP_005839330.1| - 0.054 13.2 0.4 0.058 13.1 0.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4077) DUF1469 PF07332.6 gi|385802930|ref|YP_005839330.1| - 0.16 11.6 3.4 0.19 11.4 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Aldo_ket_red PF00248.16 gi|385802931|ref|YP_005839331.1| - 8.6e-63 211.7 0.0 1e-62 211.5 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Trp_halogenase PF04820.9 gi|385802932|ref|YP_005839332.1| - 6.1e-14 51.5 4.1 3.1e-11 42.5 0.0 2.2 1 1 1 2 2 2 2 Tryptophan halogenase FAD_binding_3 PF01494.14 gi|385802932|ref|YP_005839332.1| - 3e-12 46.2 3.3 5e-11 42.2 2.3 2.1 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|385802932|ref|YP_005839332.1| - 5.4e-10 38.7 5.1 9.5e-05 21.4 0.0 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|385802932|ref|YP_005839332.1| - 8.7e-10 38.0 6.8 7.1e-05 21.8 2.5 2.5 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.2 gi|385802932|ref|YP_005839332.1| - 1.1e-09 37.9 7.1 2.8e-09 36.5 5.0 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|385802932|ref|YP_005839332.1| - 2.2e-07 30.0 0.2 3.5e-07 29.4 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|385802932|ref|YP_005839332.1| - 1.1e-05 25.3 0.2 2.3e-05 24.3 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|385802932|ref|YP_005839332.1| - 1.2e-05 24.0 2.6 0.00018 20.1 0.6 2.2 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|385802932|ref|YP_005839332.1| - 0.00052 19.1 0.7 0.0016 17.5 0.1 2.0 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.22 gi|385802932|ref|YP_005839332.1| - 0.00086 19.6 1.4 0.53 10.7 0.3 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|385802932|ref|YP_005839332.1| - 0.0024 17.9 0.5 0.0059 16.6 0.3 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|385802932|ref|YP_005839332.1| - 0.0066 15.4 2.9 0.7 8.7 0.1 2.3 2 1 0 2 2 2 2 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|385802932|ref|YP_005839332.1| - 0.018 15.0 0.5 0.053 13.5 0.3 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.16 gi|385802932|ref|YP_005839332.1| - 0.033 13.7 0.1 0.062 12.8 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain GMC_oxred_N PF00732.14 gi|385802932|ref|YP_005839332.1| - 0.047 12.8 0.1 5.4 6.0 0.0 2.2 2 0 0 2 2 2 0 GMC oxidoreductase TPP_enzyme_C PF02775.16 gi|385802933|ref|YP_005839333.1| - 4.1e-31 107.6 0.2 6.3e-31 107.0 0.1 1.4 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|385802933|ref|YP_005839333.1| - 1.2e-13 50.7 0.2 3e-13 49.4 0.1 1.7 2 0 0 2 2 2 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.14 gi|385802934|ref|YP_005839334.1| - 3.2e-59 200.2 0.3 5.4e-59 199.4 0.2 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|385802934|ref|YP_005839334.1| - 1.6e-41 142.1 0.1 3.1e-41 141.1 0.1 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|385802934|ref|YP_005839334.1| - 6.5e-05 22.4 0.9 9.9e-05 21.8 0.2 1.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MsyB PF13984.1 gi|385802934|ref|YP_005839334.1| - 0.026 14.5 0.1 0.064 13.2 0.1 1.6 1 0 0 1 1 1 0 MsyB protein FAD_binding_6 PF00970.19 gi|385802935|ref|YP_005839335.1| - 3.3e-12 46.3 0.0 5.2e-12 45.7 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain FAD_binding_9 PF08021.6 gi|385802935|ref|YP_005839335.1| - 0.0036 17.2 0.0 0.019 14.8 0.0 2.0 1 1 1 2 2 2 1 Siderophore-interacting FAD-binding domain AMP-binding PF00501.23 gi|385802936|ref|YP_005839336.1| - 2e-90 303.1 0.2 2.6e-90 302.8 0.2 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|385802936|ref|YP_005839336.1| - 2.5e-17 63.5 0.1 6.1e-17 62.3 0.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DMRL_synthase PF00885.14 gi|385802936|ref|YP_005839336.1| - 0.072 12.7 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 6,7-dimethyl-8-ribityllumazine synthase MMPL PF03176.10 gi|385802937|ref|YP_005839337.1| - 4.1e-44 150.6 23.1 1.4e-22 79.8 6.3 2.5 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|385802937|ref|YP_005839337.1| - 1.5e-13 50.4 19.5 2.7e-09 36.6 0.4 3.0 3 0 0 3 3 3 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|385802937|ref|YP_005839337.1| - 1.7e-13 49.4 21.6 1.3e-07 29.9 5.6 2.2 2 0 0 2 2 2 2 Patched family ACR_tran PF00873.14 gi|385802937|ref|YP_005839337.1| - 5.9e-10 37.2 20.9 1.9e-05 22.3 2.8 2.4 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family NPCBM_assoc PF10633.4 gi|385802938|ref|YP_005839338.1| - 1.4e-19 69.8 11.0 7.3e-06 25.9 0.3 5.3 4 2 0 4 4 4 4 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|385802938|ref|YP_005839338.1| - 6.9e-17 61.3 10.6 4.4e-07 29.8 1.0 4.1 4 1 0 4 4 4 3 CARDB TRAP_alpha PF03896.11 gi|385802938|ref|YP_005839338.1| - 8.1e-06 25.0 0.4 0.036 13.0 0.0 2.5 2 0 0 2 2 2 2 Translocon-associated protein (TRAP), alpha subunit Fn3-like PF14310.1 gi|385802938|ref|YP_005839338.1| - 6.4e-05 22.8 0.2 10 6.1 0.0 4.9 4 0 0 4 4 4 2 Fibronectin type III-like domain DUF11 PF01345.13 gi|385802938|ref|YP_005839338.1| - 0.00015 21.7 10.6 0.31 11.1 0.1 4.9 4 0 0 4 4 4 3 Domain of unknown function DUF11 HTH_24 PF13412.1 gi|385802939|ref|YP_005839339.1| - 3.1e-07 29.6 0.0 5.1e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|385802939|ref|YP_005839339.1| - 2.2e-05 24.0 0.1 2.7e-05 23.7 0.1 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|385802939|ref|YP_005839339.1| - 0.00019 20.7 0.2 0.00031 20.1 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|385802939|ref|YP_005839339.1| - 0.00042 20.0 0.0 0.00062 19.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|385802939|ref|YP_005839339.1| - 0.00062 19.2 0.0 0.00072 19.0 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit MarR PF01047.17 gi|385802939|ref|YP_005839339.1| - 0.0019 17.8 0.0 0.0025 17.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|385802939|ref|YP_005839339.1| - 0.002 18.4 0.1 0.0027 17.9 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|385802939|ref|YP_005839339.1| - 0.0044 16.6 0.1 0.0053 16.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.7 gi|385802939|ref|YP_005839339.1| - 0.008 15.6 0.0 0.014 14.8 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.15 gi|385802939|ref|YP_005839339.1| - 0.01 15.4 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|385802939|ref|YP_005839339.1| - 0.025 14.5 0.0 0.033 14.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|385802939|ref|YP_005839339.1| - 0.026 14.6 0.0 0.035 14.2 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|385802939|ref|YP_005839339.1| - 0.036 13.8 0.0 0.045 13.5 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|385802939|ref|YP_005839339.1| - 0.07 12.7 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain MMPL PF03176.10 gi|385802940|ref|YP_005839340.1| - 5.2e-34 117.4 21.1 5.3e-20 71.3 5.1 2.4 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|385802940|ref|YP_005839340.1| - 2.5e-13 49.7 3.6 1.3e-08 34.4 0.3 2.8 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|385802940|ref|YP_005839340.1| - 2.2e-09 35.8 21.4 2.1e-08 32.6 5.4 2.2 2 0 0 2 2 2 2 Patched family TMEM154 PF15102.1 gi|385802940|ref|YP_005839340.1| - 8.6 6.0 7.4 60 3.3 0.0 3.4 2 1 0 2 2 2 0 TMEM154 protein family NPCBM_assoc PF10633.4 gi|385802941|ref|YP_005839341.1| - 1.6e-10 40.9 15.6 0.0044 17.0 0.1 6.7 6 1 0 6 6 6 3 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|385802941|ref|YP_005839341.1| - 2.3e-10 40.4 12.6 0.00016 21.6 0.0 5.2 3 1 1 4 4 4 4 CARDB DUF11 PF01345.13 gi|385802941|ref|YP_005839341.1| - 8.9e-09 35.2 9.9 0.0064 16.5 0.2 4.8 4 1 0 4 4 4 2 Domain of unknown function DUF11 Transglut_C PF00927.17 gi|385802941|ref|YP_005839341.1| - 0.0002 21.3 0.6 0.041 13.9 0.0 3.8 4 0 0 4 4 4 1 Transglutaminase family, C-terminal ig like domain DUF1081 PF06448.6 gi|385802941|ref|YP_005839341.1| - 0.00079 19.3 3.3 0.02 14.7 0.1 3.2 2 1 1 3 3 3 1 Domain of Unknown Function (DUF1081) Inhibitor_I42 PF09394.5 gi|385802941|ref|YP_005839341.1| - 0.034 14.4 1.6 0.3 11.4 0.0 3.2 3 0 0 3 3 3 0 Chagasin family peptidase inhibitor I42 Alpha_adaptinC2 PF02883.15 gi|385802941|ref|YP_005839341.1| - 0.047 14.0 2.9 2.6 8.3 0.7 2.7 1 1 2 3 3 3 0 Adaptin C-terminal domain DUF4232 PF14016.1 gi|385802941|ref|YP_005839341.1| - 0.32 10.6 9.6 11 5.6 0.1 4.5 3 1 0 4 4 4 0 Protein of unknown function (DUF4232) AAA PF00004.24 gi|385802942|ref|YP_005839342.1| - 6.6e-46 155.7 2.5 1.8e-45 154.3 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|385802942|ref|YP_005839342.1| - 2.8e-09 37.1 0.0 9e-09 35.4 0.0 1.9 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|385802942|ref|YP_005839342.1| - 2.4e-07 30.5 0.2 3.1e-06 26.9 0.2 2.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|385802942|ref|YP_005839342.1| - 6.3e-07 28.6 0.0 1.5e-06 27.4 0.0 1.7 2 0 0 2 2 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|385802942|ref|YP_005839342.1| - 6.6e-07 29.4 3.7 2.7e-05 24.2 0.0 3.7 2 2 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|385802942|ref|YP_005839342.1| - 1.4e-06 28.4 2.7 4.1e-05 23.7 0.1 2.9 2 2 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|385802942|ref|YP_005839342.1| - 4.9e-06 27.3 0.3 2.8e-05 24.9 0.0 2.3 2 1 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|385802942|ref|YP_005839342.1| - 5.9e-05 22.1 0.0 0.00013 20.9 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_14 PF13173.1 gi|385802942|ref|YP_005839342.1| - 0.00012 21.9 0.2 0.00086 19.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|385802942|ref|YP_005839342.1| - 0.00023 20.7 1.0 0.008 15.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|385802942|ref|YP_005839342.1| - 0.00043 19.7 0.1 0.023 14.1 0.1 2.8 1 1 0 1 1 1 1 Sigma-54 interaction domain NACHT PF05729.7 gi|385802942|ref|YP_005839342.1| - 0.00064 19.4 0.1 0.043 13.4 0.0 2.6 1 1 0 2 2 2 1 NACHT domain IstB_IS21 PF01695.12 gi|385802942|ref|YP_005839342.1| - 0.00081 18.8 0.1 0.0025 17.2 0.0 1.9 2 0 0 2 2 2 1 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|385802942|ref|YP_005839342.1| - 0.00094 18.4 0.2 0.0031 16.6 0.1 1.9 2 0 0 2 2 1 1 Magnesium chelatase, subunit ChlI TIP49 PF06068.8 gi|385802942|ref|YP_005839342.1| - 0.001 17.8 0.7 0.0027 16.5 0.0 2.0 2 0 0 2 2 2 1 TIP49 C-terminus AAA_18 PF13238.1 gi|385802942|ref|YP_005839342.1| - 0.001 19.3 0.4 0.014 15.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|385802942|ref|YP_005839342.1| - 0.0013 18.4 0.2 0.0035 17.0 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain DUF4201 PF13870.1 gi|385802942|ref|YP_005839342.1| - 0.0027 17.1 5.4 0.0048 16.3 3.7 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4201) AAA_33 PF13671.1 gi|385802942|ref|YP_005839342.1| - 0.0028 17.5 0.0 0.0091 15.8 0.0 2.0 1 0 0 1 1 1 1 AAA domain GrpE PF01025.14 gi|385802942|ref|YP_005839342.1| - 0.003 17.1 6.9 0.003 17.1 4.8 1.7 2 0 0 2 2 1 1 GrpE ATG16 PF08614.6 gi|385802942|ref|YP_005839342.1| - 0.0037 17.1 10.0 0.0037 17.1 6.9 2.3 2 0 0 2 2 2 1 Autophagy protein 16 (ATG16) AAA_28 PF13521.1 gi|385802942|ref|YP_005839342.1| - 0.0041 17.1 0.1 0.012 15.6 0.0 2.0 2 0 0 2 2 1 1 AAA domain Sigma54_activ_2 PF14532.1 gi|385802942|ref|YP_005839342.1| - 0.0041 17.1 0.1 0.024 14.6 0.0 2.4 2 1 0 2 2 1 1 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|385802942|ref|YP_005839342.1| - 0.0044 17.1 0.0 0.012 15.7 0.0 1.8 1 0 0 1 1 1 1 RNA helicase Zeta_toxin PF06414.7 gi|385802942|ref|YP_005839342.1| - 0.0047 16.0 0.4 0.014 14.5 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin NTPase_1 PF03266.10 gi|385802942|ref|YP_005839342.1| - 0.0051 16.5 5.2 0.3 10.7 0.2 3.6 2 2 1 3 3 3 1 NTPase Arch_ATPase PF01637.13 gi|385802942|ref|YP_005839342.1| - 0.0059 16.3 2.0 0.068 12.8 0.0 2.8 2 1 0 2 2 2 1 Archaeal ATPase NB-ARC PF00931.17 gi|385802942|ref|YP_005839342.1| - 0.0089 14.9 0.1 0.11 11.2 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain AAA_11 PF13086.1 gi|385802942|ref|YP_005839342.1| - 0.0095 15.5 1.5 0.31 10.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.6 gi|385802942|ref|YP_005839342.1| - 0.011 15.2 0.1 0.04 13.5 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Kinetocho_Slk19 PF12709.2 gi|385802942|ref|YP_005839342.1| - 0.015 15.3 2.7 0.05 13.6 1.9 1.9 1 0 0 1 1 1 0 Central kinetochore-associated Parvo_NS1 PF01057.12 gi|385802942|ref|YP_005839342.1| - 0.023 13.6 0.0 0.048 12.5 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Creatininase PF02633.9 gi|385802942|ref|YP_005839342.1| - 0.023 13.7 0.0 0.04 12.9 0.0 1.3 1 0 0 1 1 1 0 Creatinine amidohydrolase KaiC PF06745.8 gi|385802942|ref|YP_005839342.1| - 0.029 13.4 6.2 0.27 10.3 0.0 3.3 2 2 0 3 3 3 0 KaiC AAA_25 PF13481.1 gi|385802942|ref|YP_005839342.1| - 0.033 13.5 10.5 0.038 13.3 0.1 3.4 3 1 1 4 4 4 0 AAA domain DUF2051 PF09738.4 gi|385802942|ref|YP_005839342.1| - 0.036 13.3 12.0 0.013 14.7 6.4 1.6 2 0 0 2 2 2 0 Double stranded RNA binding protein (DUF2051) bZIP_1 PF00170.16 gi|385802942|ref|YP_005839342.1| - 0.044 13.7 11.2 0.37 10.7 2.5 2.6 1 1 1 2 2 2 0 bZIP transcription factor RapA_C PF12137.3 gi|385802942|ref|YP_005839342.1| - 0.06 12.1 8.8 0.63 8.8 3.9 2.9 2 1 0 3 3 3 0 RNA polymerase recycling family C-terminal APG6 PF04111.7 gi|385802942|ref|YP_005839342.1| - 0.076 12.0 7.5 0.13 11.2 5.2 1.4 1 0 0 1 1 1 0 Autophagy protein Apg6 AAA_23 PF13476.1 gi|385802942|ref|YP_005839342.1| - 0.099 12.9 9.1 4.2 7.6 0.0 2.5 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|385802942|ref|YP_005839342.1| - 0.12 11.8 0.2 1.9 7.9 0.0 2.2 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain ABC_tran PF00005.22 gi|385802942|ref|YP_005839342.1| - 0.17 12.1 5.1 0.2 11.9 0.0 2.7 2 1 0 2 2 1 0 ABC transporter IncA PF04156.9 gi|385802942|ref|YP_005839342.1| - 0.25 10.8 14.3 1.1 8.7 8.8 2.1 1 1 1 2 2 2 0 IncA protein Fmp27_WPPW PF10359.4 gi|385802942|ref|YP_005839342.1| - 0.45 8.8 7.4 0.85 7.9 5.1 1.4 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain eIF-4B PF06273.6 gi|385802942|ref|YP_005839342.1| - 0.47 9.1 4.4 0.7 8.5 3.1 1.2 1 0 0 1 1 1 0 Plant specific eukaryotic initiation factor 4B Macoilin PF09726.4 gi|385802942|ref|YP_005839342.1| - 0.47 8.6 6.4 0.68 8.1 4.5 1.2 1 0 0 1 1 1 0 Transmembrane protein Cep57_CLD_2 PF14197.1 gi|385802942|ref|YP_005839342.1| - 2.1 8.3 13.8 0.63 10.0 7.3 1.8 2 0 0 2 2 1 0 Centrosome localisation domain of PPC89 Nup54 PF13874.1 gi|385802942|ref|YP_005839342.1| - 2.8 7.6 10.0 5.4 6.6 6.0 2.2 2 1 0 2 2 1 0 Nucleoporin complex subunit 54 HhH-GPD PF00730.20 gi|385802943|ref|YP_005839343.1| - 1.8e-23 82.8 0.0 1.1e-22 80.3 0.0 1.9 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|385802943|ref|YP_005839343.1| - 3.1e-10 39.1 0.0 8.8e-10 37.7 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|385802943|ref|YP_005839343.1| - 0.0025 17.9 2.2 0.0049 17.0 1.5 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|385802943|ref|YP_005839343.1| - 0.0029 17.7 0.1 0.29 11.3 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain DUF3349 PF11829.3 gi|385802943|ref|YP_005839343.1| - 0.02 15.3 0.1 0.06 13.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3349) DUF4125 PF13526.1 gi|385802943|ref|YP_005839343.1| - 0.11 11.9 0.2 0.29 10.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4125) IncA PF04156.9 gi|385802945|ref|YP_005839345.1| - 0.014 15.0 0.3 0.032 13.8 0.0 1.7 2 0 0 2 2 2 0 IncA protein DUF3951 PF13131.1 gi|385802945|ref|YP_005839345.1| - 0.15 11.8 1.7 0.28 10.9 1.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3951) Copper-bind PF00127.15 gi|385802946|ref|YP_005839346.1| - 5.3e-13 49.0 0.1 1.3e-12 47.8 0.0 1.7 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Mucin PF01456.12 gi|385802946|ref|YP_005839346.1| - 4.7 6.9 24.6 10 5.8 17.0 1.5 1 0 0 1 1 1 0 Mucin-like glycoprotein ABC2_membrane_4 PF12730.2 gi|385802947|ref|YP_005839347.1| - 2.8 7.0 8.6 3.5 6.7 5.9 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Cytochrom_B_N_2 PF13631.1 gi|385802948|ref|YP_005839348.1| - 1e-41 142.5 15.2 2.6e-41 141.2 8.3 2.1 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_N PF00033.14 gi|385802948|ref|YP_005839348.1| - 9.6e-12 44.6 17.2 1.4e-11 44.1 11.9 1.2 1 0 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB PepSY_TM PF03929.11 gi|385802948|ref|YP_005839348.1| - 0.074 13.4 0.1 0.074 13.4 0.0 3.8 3 1 0 3 3 3 0 PepSY-associated TM helix Cytochrom_B_C PF00032.12 gi|385802949|ref|YP_005839349.1| - 1.4e-08 34.8 0.1 3.2e-08 33.7 0.0 1.6 1 1 0 1 1 1 1 Cytochrome b(C-terminal)/b6/petD MARVEL PF01284.18 gi|385802949|ref|YP_005839349.1| - 0.17 11.7 4.8 0.47 10.2 3.3 1.8 1 1 0 1 1 1 0 Membrane-associating domain Tnp_DNA_bind PF14706.1 gi|385802950|ref|YP_005839350.1| - 1e-24 85.9 0.0 1.8e-24 85.2 0.0 1.4 1 0 0 1 1 1 1 Transposase DNA-binding DDE_Tnp_1 PF01609.16 gi|385802950|ref|YP_005839350.1| - 8.8e-06 25.4 0.1 2.3e-05 24.0 0.1 1.7 2 1 0 2 2 2 1 Transposase DDE domain Dimer_Tnp_Tn5 PF02281.11 gi|385802950|ref|YP_005839350.1| - 0.063 13.4 0.1 0.17 12.0 0.0 1.7 2 0 0 2 2 2 0 Transposase Tn5 dimerisation domain DUF1049 PF06305.6 gi|385802951|ref|YP_005839351.1| - 0.15 11.5 1.8 0.22 11.0 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) DUF2985 PF11204.3 gi|385802951|ref|YP_005839351.1| - 0.34 10.6 1.9 0.75 9.5 1.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2985) SPC12 PF06645.8 gi|385802951|ref|YP_005839351.1| - 1 9.2 3.0 2 8.2 2.1 1.5 1 0 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) EBP PF05241.7 gi|385802952|ref|YP_005839352.1| - 0.98 8.3 4.6 0.91 8.4 2.1 1.6 1 1 0 2 2 2 0 Emopamil binding protein DUF3951 PF13131.1 gi|385802952|ref|YP_005839352.1| - 3 7.6 5.7 5.1 6.9 3.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3951) Voltage_CLC PF00654.15 gi|385802953|ref|YP_005839353.1| - 0.016 14.2 1.5 0.019 14.0 1.0 1.1 1 0 0 1 1 1 0 Voltage gated chloride channel Polysacc_synt_C PF14667.1 gi|385802953|ref|YP_005839353.1| - 0.64 9.8 5.7 2 8.2 0.4 2.3 2 0 0 2 2 2 0 Polysaccharide biosynthesis C-terminal domain PRA1 PF03208.14 gi|385802953|ref|YP_005839353.1| - 0.94 8.8 3.9 0.28 10.5 1.0 1.4 2 0 0 2 2 2 0 PRA1 family protein DUF202 PF02656.10 gi|385802953|ref|YP_005839353.1| - 1.5 9.0 5.8 57 4.0 0.2 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF202) Abhydrolase_6 PF12697.2 gi|385802954|ref|YP_005839354.1| - 6.5e-29 101.4 0.0 8e-29 101.1 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|385802954|ref|YP_005839354.1| - 3.8e-12 46.1 0.0 3.2e-11 43.1 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|385802954|ref|YP_005839354.1| - 0.00013 21.5 0.0 0.00079 19.0 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|385802954|ref|YP_005839354.1| - 0.00059 19.6 0.0 0.0011 18.7 0.0 1.5 1 0 0 1 1 1 1 Putative lysophospholipase MTH865 PF07747.6 gi|385802955|ref|YP_005839355.1| - 2.4e-21 75.1 0.1 2.8e-21 74.9 0.1 1.0 1 0 0 1 1 1 1 MTH865-like family Copper-bind PF00127.15 gi|385802956|ref|YP_005839356.1| - 1.5e-12 47.5 0.0 2.7e-12 46.7 0.0 1.4 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupin_3 PF05899.7 gi|385802956|ref|YP_005839356.1| - 0.022 14.1 0.4 0.042 13.2 0.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF861) TraT PF05818.7 gi|385802956|ref|YP_005839356.1| - 0.024 14.0 2.7 0.037 13.4 1.9 1.3 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein Shadoo PF14999.1 gi|385802956|ref|YP_005839356.1| - 0.038 13.8 1.1 0.066 13.0 0.8 1.4 1 0 0 1 1 1 0 Shadow of prion protein, neuroprotective Glycos_transf_1 PF00534.15 gi|385802957|ref|YP_005839357.1| - 1.1e-15 57.4 0.0 2.1e-15 56.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|385802957|ref|YP_005839357.1| - 5.4e-13 49.3 2.1 5.4e-13 49.3 1.5 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|385802957|ref|YP_005839357.1| - 2e-07 30.9 0.0 3.9e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|385802957|ref|YP_005839357.1| - 0.00016 21.5 0.0 0.00034 20.4 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase 4-like SMP PF04927.7 gi|385802957|ref|YP_005839357.1| - 0.027 14.4 0.1 0.16 11.9 0.0 2.1 2 0 0 2 2 2 0 Seed maturation protein DUF506 PF04720.7 gi|385802957|ref|YP_005839357.1| - 0.1 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF506) DUF420 PF04238.7 gi|385802958|ref|YP_005839358.1| - 4e-40 136.8 7.0 4e-40 136.8 4.9 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF420) Orai-1 PF07856.7 gi|385802958|ref|YP_005839358.1| - 0.021 14.3 0.8 0.021 14.3 0.6 2.4 2 1 0 2 2 2 0 Mediator of CRAC channel activity DUF2306 PF10067.4 gi|385802958|ref|YP_005839358.1| - 0.041 14.0 14.4 0.089 12.9 2.8 3.2 2 1 0 3 3 3 0 Predicted membrane protein (DUF2306) PGG PF13962.1 gi|385802958|ref|YP_005839358.1| - 0.13 11.8 4.0 1.1 8.8 0.2 2.6 3 0 0 3 3 3 0 Domain of unknown function CTP_transf_1 PF01148.15 gi|385802958|ref|YP_005839358.1| - 0.9 9.1 11.4 2.9 7.4 7.9 2.0 1 1 0 1 1 1 0 Cytidylyltransferase family DUF1240 PF06836.7 gi|385802958|ref|YP_005839358.1| - 0.91 9.7 3.9 0.96 9.7 0.1 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF1240) DUF2231 PF09990.4 gi|385802958|ref|YP_005839358.1| - 1.1 9.6 14.4 0.15 12.4 3.3 2.7 2 2 0 2 2 2 0 Predicted membrane protein (DUF2231) DUF4029 PF13221.1 gi|385802958|ref|YP_005839358.1| - 2.4 8.6 5.8 1.7 9.0 0.4 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF4029) Fe-ADH_2 PF13685.1 gi|385802959|ref|YP_005839359.1| - 1.9e-58 197.7 1.4 2.4e-58 197.4 0.9 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|385802959|ref|YP_005839359.1| - 3.9e-21 75.1 6.8 6.5e-21 74.3 4.7 1.3 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|385802959|ref|YP_005839359.1| - 9.7e-10 37.7 0.1 2.8e-09 36.2 0.1 1.6 1 1 0 1 1 1 1 3-dehydroquinate synthase LysE PF01810.13 gi|385802960|ref|YP_005839360.1| - 1.1e-28 99.8 12.0 4e-27 94.7 8.3 2.3 1 1 0 1 1 1 1 LysE type translocator Wzy_C PF04932.10 gi|385802960|ref|YP_005839360.1| - 8.6 6.1 15.7 6.4 6.5 0.6 2.5 1 1 1 2 2 2 0 O-Antigen ligase UPF0016 PF01169.14 gi|385802961|ref|YP_005839361.1| - 9.7e-24 83.3 17.7 2e-14 53.4 2.7 2.3 2 0 0 2 2 2 2 Uncharacterized protein family UPF0016 Fe_dep_repr_C PF02742.10 gi|385802962|ref|YP_005839362.1| - 3.2e-27 93.9 0.1 6.5e-27 93.0 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain FeoA PF04023.9 gi|385802962|ref|YP_005839362.1| - 8.1e-15 54.5 0.1 2.9e-14 52.7 0.1 2.0 2 0 0 2 2 2 1 FeoA domain Fe_dep_repress PF01325.14 gi|385802962|ref|YP_005839362.1| - 1.1e-14 54.1 0.4 1.9e-14 53.3 0.3 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_15 PF12324.3 gi|385802962|ref|YP_005839362.1| - 0.031 13.9 0.0 0.11 12.1 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase Topoisom_bac PF01131.15 gi|385802962|ref|YP_005839362.1| - 0.037 12.8 0.1 0.056 12.2 0.1 1.2 1 0 0 1 1 1 0 DNA topoisomerase HrcA_DNA-bdg PF03444.10 gi|385802962|ref|YP_005839362.1| - 0.042 13.2 0.0 0.18 11.2 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding MarR_2 PF12802.2 gi|385802962|ref|YP_005839362.1| - 0.085 12.5 0.1 1.6 8.4 0.0 2.6 2 1 1 3 3 3 0 MarR family PALP PF00291.20 gi|385802963|ref|YP_005839363.1| - 4.3e-57 193.6 4.8 5.1e-57 193.4 3.4 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PK_C PF02887.11 gi|385802963|ref|YP_005839363.1| - 4 7.0 5.5 4.1 6.9 0.2 3.0 2 2 1 3 3 3 0 Pyruvate kinase, alpha/beta domain Amino_oxidase PF01593.19 gi|385802964|ref|YP_005839364.1| - 1.4e-36 126.5 0.5 4.8e-36 124.7 0.4 1.7 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|385802964|ref|YP_005839364.1| - 4.6e-16 58.6 0.3 1e-15 57.4 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|385802964|ref|YP_005839364.1| - 1.9e-14 53.3 1.1 1.1e-07 31.1 0.2 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|385802964|ref|YP_005839364.1| - 4.5e-08 31.9 1.3 1.9e-05 23.3 0.2 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.9 gi|385802964|ref|YP_005839364.1| - 4.5e-07 29.9 1.8 2.8e-05 24.1 0.6 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|385802964|ref|YP_005839364.1| - 1.2e-06 28.7 0.0 3.2e-05 24.0 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|385802964|ref|YP_005839364.1| - 4.3e-06 25.8 2.0 8e-06 24.9 1.4 1.4 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|385802964|ref|YP_005839364.1| - 1.9e-05 23.9 5.5 0.0004 19.5 2.0 2.9 3 0 0 3 3 3 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|385802964|ref|YP_005839364.1| - 2.1e-05 23.7 0.2 4e-05 22.8 0.2 1.4 1 0 0 1 1 1 1 Thi4 family NAD_binding_9 PF13454.1 gi|385802964|ref|YP_005839364.1| - 0.00011 21.9 3.1 0.13 12.0 0.2 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding GIDA PF01134.17 gi|385802964|ref|YP_005839364.1| - 0.00014 20.8 1.0 0.00014 20.8 0.7 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|385802964|ref|YP_005839364.1| - 0.00047 19.3 0.6 0.0012 18.0 0.4 1.7 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|385802964|ref|YP_005839364.1| - 0.00071 19.9 1.5 0.0028 18.0 0.3 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|385802964|ref|YP_005839364.1| - 0.0021 18.2 0.8 0.024 14.8 0.0 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|385802964|ref|YP_005839364.1| - 0.0027 17.2 0.5 0.0027 17.2 0.3 1.6 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|385802964|ref|YP_005839364.1| - 0.0032 17.1 1.2 0.0065 16.1 0.9 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|385802964|ref|YP_005839364.1| - 0.015 15.0 0.7 0.038 13.7 0.1 1.9 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FMO-like PF00743.14 gi|385802964|ref|YP_005839364.1| - 0.024 12.8 0.0 0.042 12.0 0.0 1.3 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like Lycopene_cycl PF05834.7 gi|385802964|ref|YP_005839364.1| - 0.21 10.4 2.3 0.11 11.3 0.2 1.4 2 0 0 2 2 2 0 Lycopene cyclase protein adh_short_C2 PF13561.1 gi|385802965|ref|YP_005839365.1| - 1.1e-31 110.4 0.0 1.3e-31 110.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|385802965|ref|YP_005839365.1| - 1.3e-21 77.2 0.0 1.9e-21 76.7 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|385802965|ref|YP_005839365.1| - 2.3e-09 37.2 0.0 5.1e-08 32.7 0.0 2.1 2 0 0 2 2 2 1 KR domain NAD_binding_10 PF13460.1 gi|385802965|ref|YP_005839365.1| - 3.5e-06 27.1 0.1 6e-06 26.3 0.0 1.4 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|385802965|ref|YP_005839365.1| - 0.00036 20.0 0.0 0.00053 19.4 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Pyr_redox PF00070.22 gi|385802965|ref|YP_005839365.1| - 0.014 15.8 0.1 0.031 14.6 0.1 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|385802965|ref|YP_005839365.1| - 0.042 12.8 0.0 0.049 12.6 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Metallophos_2 PF12850.2 gi|385802966|ref|YP_005839366.1| - 4.3e-08 33.1 0.1 5.2e-08 32.8 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|385802966|ref|YP_005839366.1| - 1e-07 31.5 0.3 2e-07 30.6 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Exo_endo_phos_2 PF14529.1 gi|385802966|ref|YP_005839366.1| - 0.11 12.1 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Endonuclease-reverse transcriptase MarR_2 PF12802.2 gi|385802967|ref|YP_005839367.1| - 3.5e-10 39.4 0.1 9.4e-10 38.0 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|385802967|ref|YP_005839367.1| - 4.6e-09 35.5 0.0 7.7e-09 34.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|385802967|ref|YP_005839367.1| - 1.5e-07 31.0 0.0 3.7e-07 29.7 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|385802967|ref|YP_005839367.1| - 4e-07 30.2 0.6 1.2e-05 25.4 0.0 3.0 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|385802967|ref|YP_005839367.1| - 0.00015 21.4 0.1 0.00059 19.5 0.0 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|385802967|ref|YP_005839367.1| - 0.00027 20.5 0.1 0.00067 19.2 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_45 PF14947.1 gi|385802967|ref|YP_005839367.1| - 0.0003 20.5 0.0 0.0007 19.3 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_IclR PF09339.5 gi|385802967|ref|YP_005839367.1| - 0.00097 18.6 0.0 0.0021 17.5 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|385802967|ref|YP_005839367.1| - 0.0015 18.1 0.0 0.0026 17.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|385802967|ref|YP_005839367.1| - 0.0028 17.3 0.1 0.005 16.5 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|385802967|ref|YP_005839367.1| - 0.0041 16.8 0.0 0.016 15.0 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|385802967|ref|YP_005839367.1| - 0.01 15.9 0.0 0.034 14.2 0.0 1.8 2 0 0 2 2 1 0 Transcriptional regulator Fe_dep_repress PF01325.14 gi|385802967|ref|YP_005839367.1| - 0.01 15.7 0.0 0.02 14.7 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Mrr_N PF14338.1 gi|385802967|ref|YP_005839367.1| - 0.012 15.6 0.0 0.03 14.3 0.0 1.6 1 1 1 2 2 2 0 Mrr N-terminal domain HTH_34 PF13601.1 gi|385802967|ref|YP_005839367.1| - 0.046 13.7 0.0 0.093 12.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|385802967|ref|YP_005839367.1| - 0.072 12.7 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain FaeA PF04703.7 gi|385802967|ref|YP_005839367.1| - 0.081 13.0 0.1 0.21 11.7 0.0 1.6 1 0 0 1 1 1 0 FaeA-like protein GntR PF00392.16 gi|385802967|ref|YP_005839367.1| - 0.096 12.1 0.0 0.24 10.8 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Mnd1 PF03962.10 gi|385802967|ref|YP_005839367.1| - 0.17 11.5 0.0 0.37 10.4 0.0 1.5 1 1 0 1 1 1 0 Mnd1 family DnaJ PF00226.26 gi|385802968|ref|YP_005839368.1| - 1.5e-11 43.8 0.1 3.2e-11 42.7 0.0 1.5 1 1 1 2 2 2 1 DnaJ domain DUF993 PF06187.6 gi|385802968|ref|YP_005839368.1| - 0.1 11.1 0.1 0.15 10.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF993) PPDK_N PF01326.14 gi|385802969|ref|YP_005839369.1| - 5.6e-103 344.4 3.7 9.7e-103 343.6 2.6 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|385802969|ref|YP_005839369.1| - 1.4e-81 273.5 0.1 2.2e-81 272.9 0.1 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|385802969|ref|YP_005839369.1| - 3.1e-26 90.7 2.7 3.8e-26 90.4 1.0 1.8 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain AP_endonuc_2 PF01261.19 gi|385802969|ref|YP_005839369.1| - 0.00018 20.9 0.1 0.0039 16.5 0.0 3.1 2 1 0 2 2 2 1 Xylose isomerase-like TIM barrel PEP-utilisers_N PF05524.8 gi|385802969|ref|YP_005839369.1| - 0.0088 15.8 0.5 1 9.1 0.0 3.0 2 0 0 2 2 2 1 PEP-utilising enzyme, N-terminal SNARE_assoc PF09335.6 gi|385802970|ref|YP_005839370.1| - 7.7e-11 42.2 5.0 2.1e-10 40.8 3.3 1.8 1 1 1 2 2 2 1 SNARE associated Golgi protein tRNA-synt_1g PF09334.6 gi|385802971|ref|YP_005839371.1| - 1.6e-132 441.9 0.0 2.4e-130 434.7 0.0 2.3 1 1 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|385802971|ref|YP_005839371.1| - 1.9e-20 72.4 0.0 3.2e-20 71.7 0.0 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|385802971|ref|YP_005839371.1| - 1.2e-14 53.2 0.0 2e-08 32.7 0.0 3.6 3 1 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|385802971|ref|YP_005839371.1| - 2.4e-10 40.0 0.0 3.8e-07 29.5 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.8 gi|385802971|ref|YP_005839371.1| - 4.1e-08 33.1 0.0 7.3e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1d PF00750.14 gi|385802971|ref|YP_005839371.1| - 0.0011 17.8 0.5 0.13 11.0 0.1 2.4 1 1 0 2 2 2 2 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|385802971|ref|YP_005839371.1| - 0.011 14.3 0.0 0.25 9.9 0.0 2.6 2 1 0 3 3 3 0 tRNA synthetases class I (K) Mpt_N PF09176.6 gi|385802971|ref|YP_005839371.1| - 0.041 13.7 0.0 0.097 12.5 0.0 1.6 1 0 0 1 1 1 0 Methylene-tetrahydromethanopterin dehydrogenase, N-terminal PK PF00224.16 gi|385802972|ref|YP_005839372.1| - 1.3e-111 372.5 6.6 2.2e-111 371.8 4.6 1.3 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|385802972|ref|YP_005839372.1| - 1.6e-34 117.9 0.8 4.5e-34 116.4 0.6 1.8 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.18 gi|385802972|ref|YP_005839372.1| - 4.9e-10 38.8 0.1 4.9e-10 38.8 0.1 3.3 4 0 0 4 4 4 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.9 gi|385802972|ref|YP_005839372.1| - 0.0069 15.2 2.3 0.017 14.0 1.3 1.8 1 1 1 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Trypan_PARP PF05887.6 gi|385802973|ref|YP_005839373.1| - 0.14 11.9 5.8 0.18 11.6 4.0 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) NfeD PF01957.13 gi|385802974|ref|YP_005839374.1| - 8.1e-13 48.7 0.5 1.2e-12 48.2 0.3 1.1 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding DUF4131 PF13567.1 gi|385802974|ref|YP_005839374.1| - 0.16 11.3 0.8 0.23 10.8 0.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF533 PF04391.7 gi|385802974|ref|YP_005839374.1| - 0.16 11.2 0.0 0.16 11.2 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF533) BNIP3 PF06553.7 gi|385802974|ref|YP_005839374.1| - 0.9 8.8 7.2 0.083 12.2 1.7 1.6 2 0 0 2 2 2 0 BNIP3 TMEM238 PF15125.1 gi|385802974|ref|YP_005839374.1| - 1.4 8.8 4.9 2.8 7.9 3.4 1.5 1 0 0 1 1 1 0 TMEM238 protein family Trypan_PARP PF05887.6 gi|385802974|ref|YP_005839374.1| - 2.3 8.0 10.3 3.5 7.4 7.2 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) UbiA PF01040.13 gi|385802976|ref|YP_005839376.1| - 2.5e-27 95.7 24.4 2.5e-27 95.7 16.9 2.5 2 1 0 2 2 2 1 UbiA prenyltransferase family COX15-CtaA PF02628.10 gi|385802976|ref|YP_005839376.1| - 1.4e-14 53.6 10.8 1.4e-14 53.6 7.5 3.1 2 1 1 3 3 3 1 Cytochrome oxidase assembly protein COX2 PF00116.15 gi|385802977|ref|YP_005839377.1| - 5.7e-22 77.7 2.7 3.5e-21 75.2 0.2 2.2 1 1 1 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.10 gi|385802977|ref|YP_005839377.1| - 9.4e-09 35.1 0.0 1.6e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain CTP_transf_2 PF01467.21 gi|385802978|ref|YP_005839378.1| - 2.5e-08 34.1 0.5 5.6e-08 32.9 0.3 1.8 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|385802978|ref|YP_005839378.1| - 0.023 14.3 0.0 0.074 12.6 0.0 1.8 2 0 0 2 2 2 0 FAD synthetase Prok-JAB PF14464.1 gi|385802979|ref|YP_005839379.1| - 4e-15 55.2 0.1 8.6e-15 54.2 0.0 1.5 1 1 1 2 2 2 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|385802979|ref|YP_005839379.1| - 0.0053 16.4 0.7 0.014 15.1 0.0 2.0 2 1 0 2 2 2 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease RadC PF04002.10 gi|385802979|ref|YP_005839379.1| - 0.022 14.4 0.1 0.061 13.0 0.0 1.8 2 0 0 2 2 2 0 RadC-like JAB domain DHH PF01368.15 gi|385802980|ref|YP_005839380.1| - 1.5e-08 34.3 0.0 2.8e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 DHH family tRNA_anti-codon PF01336.20 gi|385802980|ref|YP_005839380.1| - 5.5e-08 32.5 0.0 1e-07 31.6 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|385802980|ref|YP_005839380.1| - 4.5e-05 23.4 1.6 0.00012 22.1 0.1 2.2 2 0 0 2 2 2 1 S1 RNA binding domain Nitroreductase PF00881.19 gi|385802981|ref|YP_005839381.1| - 1.5e-23 83.4 0.0 1.8e-23 83.1 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family Sigma70_r4_2 PF08281.7 gi|385802981|ref|YP_005839381.1| - 0.071 12.5 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 PLDc_2 PF13091.1 gi|385802982|ref|YP_005839382.1| - 4.5e-33 113.6 0.0 2.5e-17 62.8 0.0 2.3 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.17 gi|385802982|ref|YP_005839382.1| - 5.7e-06 25.9 0.6 4.1e-05 23.2 0.1 2.5 2 0 0 2 2 2 1 Phospholipase D Active site motif DUF1669 PF07894.7 gi|385802982|ref|YP_005839382.1| - 0.076 12.1 0.0 0.42 9.7 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1669) SDP_N PF12278.3 gi|385802982|ref|YP_005839382.1| - 0.24 10.9 0.0 0.4 10.3 0.0 1.2 1 0 0 1 1 1 0 Sex determination protein N terminal HEAT_2 PF13646.1 gi|385802983|ref|YP_005839383.1| - 3.4e-20 72.1 3.1 6.5e-12 45.5 1.2 3.6 1 1 2 3 3 3 2 HEAT repeats HEAT_PBS PF03130.11 gi|385802983|ref|YP_005839383.1| - 5.7e-13 48.0 10.4 0.006 16.9 0.1 6.4 6 1 0 6 6 6 3 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|385802983|ref|YP_005839383.1| - 1.7e-08 34.6 0.4 8.6e-05 22.9 0.6 4.0 3 1 1 4 4 4 1 HEAT-like repeat HEAT PF02985.17 gi|385802983|ref|YP_005839383.1| - 5.7e-05 22.8 0.0 0.009 16.0 0.0 4.0 4 0 0 4 4 4 1 HEAT repeat Arm PF00514.18 gi|385802983|ref|YP_005839383.1| - 0.00032 20.3 0.0 0.05 13.4 0.0 3.2 3 1 0 3 3 3 1 Armadillo/beta-catenin-like repeat DNA_alkylation PF08713.6 gi|385802983|ref|YP_005839383.1| - 0.02 14.3 0.5 0.083 12.3 0.0 2.2 2 0 0 2 2 2 0 DNA alkylation repair enzyme IncA PF04156.9 gi|385802983|ref|YP_005839383.1| - 0.12 11.9 1.7 0.2 11.2 0.2 2.0 2 0 0 2 2 2 0 IncA protein HSBP1 PF06825.7 gi|385802983|ref|YP_005839383.1| - 0.14 11.7 1.9 19 4.9 0.2 3.1 2 0 0 2 2 2 0 Heat shock factor binding protein 1 Peripla_BP_2 PF01497.13 gi|385802984|ref|YP_005839384.1| - 4.3e-27 94.7 0.1 5.7e-27 94.3 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Ferritin PF00210.19 gi|385802985|ref|YP_005839385.1| - 1.1e-27 96.5 2.1 1.2e-27 96.3 1.5 1.0 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|385802985|ref|YP_005839385.1| - 0.00047 20.3 1.1 0.018 15.2 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) DUF4003 PF13170.1 gi|385802985|ref|YP_005839385.1| - 0.012 14.8 0.2 0.021 14.1 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4003) DUF892 PF05974.7 gi|385802985|ref|YP_005839385.1| - 0.033 14.0 1.4 0.31 10.8 0.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF892) DUF4525 PF15027.1 gi|385802987|ref|YP_005839387.1| - 0.13 11.7 0.2 0.35 10.3 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4525) DUF35 PF01796.12 gi|385802988|ref|YP_005839388.1| - 4.7e-06 26.7 0.5 7.4e-06 26.1 0.4 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain Thiolase_C PF02803.13 gi|385802989|ref|YP_005839389.1| - 3.8e-08 32.7 0.1 1.1e-07 31.3 0.0 1.7 1 0 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|385802989|ref|YP_005839389.1| - 8.6e-05 21.6 0.1 0.00016 20.8 0.1 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|385802989|ref|YP_005839389.1| - 0.0013 18.5 0.9 4.7 7.0 0.0 3.3 3 0 0 3 3 3 2 Beta-ketoacyl synthase, C-terminal domain DUF1576 PF07613.6 gi|385802990|ref|YP_005839390.1| - 0.0099 15.4 5.4 0.012 15.1 3.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1576) FixH PF05751.6 gi|385802990|ref|YP_005839390.1| - 0.065 13.0 0.2 0.14 11.9 0.2 1.5 1 0 0 1 1 1 0 FixH Imm_superinfect PF14373.1 gi|385802990|ref|YP_005839390.1| - 0.18 11.4 4.8 8.3 6.1 0.1 3.6 3 0 0 3 3 3 0 Superinfection immunity protein OapA_N PF08525.6 gi|385802990|ref|YP_005839390.1| - 0.48 10.2 2.2 11 5.8 0.0 2.9 2 0 0 2 2 2 0 Opacity-associated protein A N-terminal motif Pyr_redox_2 PF07992.9 gi|385802991|ref|YP_005839391.1| - 2.2e-22 79.9 0.0 2.9e-22 79.5 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|385802991|ref|YP_005839391.1| - 3.4e-07 29.4 1.9 0.00013 21.0 0.8 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|385802991|ref|YP_005839391.1| - 2.6e-06 26.5 1.9 0.0005 19.0 0.5 2.3 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_3 PF13738.1 gi|385802991|ref|YP_005839391.1| - 1.5e-05 25.1 0.1 0.041 13.9 0.4 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|385802991|ref|YP_005839391.1| - 2.5e-05 23.3 0.5 0.00023 20.1 0.3 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|385802991|ref|YP_005839391.1| - 4.3e-05 23.8 0.1 0.0054 17.1 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|385802991|ref|YP_005839391.1| - 0.00033 19.2 0.2 0.0034 15.9 0.2 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.2 gi|385802991|ref|YP_005839391.1| - 0.00069 18.8 0.7 0.00069 18.8 0.5 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|385802991|ref|YP_005839391.1| - 0.0014 17.7 0.4 0.0024 16.9 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|385802991|ref|YP_005839391.1| - 0.0048 16.0 0.1 0.01 14.9 0.1 1.5 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.1 gi|385802991|ref|YP_005839391.1| - 0.0078 16.2 0.9 0.013 15.5 0.2 1.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|385802991|ref|YP_005839391.1| - 0.014 15.1 0.1 0.27 11.0 0.0 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding K_oxygenase PF13434.1 gi|385802991|ref|YP_005839391.1| - 0.048 12.5 0.0 0.16 10.8 0.0 1.7 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.16 gi|385802991|ref|YP_005839391.1| - 0.094 12.2 0.1 0.19 11.2 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Peptidase_S24 PF00717.18 gi|385802993|ref|YP_005839393.1| - 0.0011 18.6 0.0 0.0059 16.2 0.0 2.3 3 0 0 3 3 3 1 Peptidase S24-like DUF756 PF05506.7 gi|385802994|ref|YP_005839394.1| - 0.73 10.3 0.0 0.73 10.3 0.0 4.4 5 0 0 5 5 5 0 Domain of unknown function (DUF756) TRAP_beta PF05753.9 gi|385802994|ref|YP_005839394.1| - 1.8 7.6 6.5 4.5 6.3 0.0 3.9 4 0 0 4 4 4 0 Translocon-associated protein beta (TRAPB) DUF2393 PF09624.5 gi|385802995|ref|YP_005839395.1| - 0.0002 20.8 0.0 0.057 12.9 0.0 2.7 2 0 0 2 2 2 2 Protein of unknown function (DUF2393) Peptidase_M73 PF12389.3 gi|385802995|ref|YP_005839395.1| - 0.0032 16.9 0.1 0.4 10.1 0.0 2.7 2 0 0 2 2 2 1 Camelysin metallo-endopeptidase DUF1102 PF06510.6 gi|385802995|ref|YP_005839395.1| - 0.011 15.4 2.1 0.025 14.3 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1102) Kelch_1 PF01344.20 gi|385802995|ref|YP_005839395.1| - 0.014 14.9 0.2 0.037 13.5 0.1 1.7 1 0 0 1 1 1 0 Kelch motif Transglut_C PF00927.17 gi|385802995|ref|YP_005839395.1| - 0.03 14.3 0.2 10 6.1 0.0 3.6 3 0 0 3 3 3 0 Transglutaminase family, C-terminal ig like domain LRR_6 PF13516.1 gi|385802996|ref|YP_005839396.1| - 0.19 11.8 1.5 1.6 9.0 0.2 3.4 3 0 0 3 3 3 0 Leucine Rich repeat Methyltransf_11 PF08241.7 gi|385802999|ref|YP_005839399.1| - 4.2e-16 59.2 0.0 6.4e-16 58.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|385802999|ref|YP_005839399.1| - 6e-13 49.0 0.0 1.1e-12 48.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385802999|ref|YP_005839399.1| - 1.7e-12 47.1 0.0 2.4e-12 46.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385802999|ref|YP_005839399.1| - 7.6e-11 42.5 0.1 1.1e-10 42.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|385802999|ref|YP_005839399.1| - 2.7e-10 40.6 0.0 4.6e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|385802999|ref|YP_005839399.1| - 4.7e-08 32.4 0.0 6e-08 32.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|385802999|ref|YP_005839399.1| - 7.1e-07 29.2 0.1 1.2e-06 28.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|385802999|ref|YP_005839399.1| - 1.5e-06 28.0 0.0 1.8e-06 27.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|385802999|ref|YP_005839399.1| - 1.6e-05 24.0 0.0 2.5e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase UPF0020 PF01170.13 gi|385802999|ref|YP_005839399.1| - 0.0032 17.0 0.0 0.0046 16.5 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.1 gi|385802999|ref|YP_005839399.1| - 0.0044 16.7 0.0 0.0071 16.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|385802999|ref|YP_005839399.1| - 0.0048 15.9 0.0 0.0071 15.4 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.10 gi|385802999|ref|YP_005839399.1| - 0.012 15.2 0.0 0.18 11.4 0.0 2.0 1 1 0 1 1 1 0 Hypothetical methyltransferase MTS PF05175.9 gi|385802999|ref|YP_005839399.1| - 0.021 14.2 0.0 0.031 13.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_5 PF01795.14 gi|385802999|ref|YP_005839399.1| - 0.07 12.3 0.0 0.13 11.5 0.0 1.4 2 0 0 2 2 2 0 MraW methylase family DUF633 PF04816.7 gi|385802999|ref|YP_005839399.1| - 0.072 12.4 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF633) Zn_Tnp_IS1595 PF12760.2 gi|385803000|ref|YP_005839400.1| - 0.00078 19.1 0.1 1.2 9.0 0.0 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain Rubredoxin PF00301.15 gi|385803000|ref|YP_005839400.1| - 0.0052 16.6 0.6 1.6 8.6 0.1 2.2 2 0 0 2 2 2 2 Rubredoxin zf-TFIIB PF13453.1 gi|385803000|ref|YP_005839400.1| - 0.0057 15.8 0.4 0.021 14.0 0.3 1.8 1 1 0 1 1 1 1 Transcription factor zinc-finger TF_Zn_Ribbon PF08271.7 gi|385803000|ref|YP_005839400.1| - 0.0075 15.5 1.8 0.12 11.7 0.1 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding zf-ISL3 PF14690.1 gi|385803000|ref|YP_005839400.1| - 0.011 15.7 0.6 3.7 7.6 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DZR PF12773.2 gi|385803000|ref|YP_005839400.1| - 0.028 14.2 0.6 0.1 12.4 0.4 1.8 1 1 0 1 1 1 0 Double zinc ribbon Methyltransf_13 PF08421.6 gi|385803000|ref|YP_005839400.1| - 0.031 13.7 0.2 0.15 11.5 0.0 1.9 2 0 0 2 2 2 0 Putative zinc binding domain zf-C4_Topoisom PF01396.14 gi|385803000|ref|YP_005839400.1| - 0.032 13.7 0.9 5.3 6.6 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.5 gi|385803000|ref|YP_005839400.1| - 0.035 14.0 1.7 5.1 7.1 0.2 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zf-Mss51 PF13824.1 gi|385803000|ref|YP_005839400.1| - 0.036 13.9 0.7 0.14 12.0 0.5 1.8 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-IS66 PF13005.2 gi|385803000|ref|YP_005839400.1| - 0.045 13.7 0.8 1.4 8.9 0.1 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-ribbon_3 PF13248.1 gi|385803000|ref|YP_005839400.1| - 0.046 12.9 0.5 4.1 6.7 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF1936 PF09151.5 gi|385803000|ref|YP_005839400.1| - 0.08 12.4 0.1 1.1 8.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) UPF0547 PF10571.4 gi|385803000|ref|YP_005839400.1| - 0.094 12.4 2.6 4.3 7.1 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.7 gi|385803000|ref|YP_005839400.1| - 0.21 11.4 1.5 3.6 7.4 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_2 PF13240.1 gi|385803000|ref|YP_005839400.1| - 0.35 10.4 1.9 7.3 6.2 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.6 gi|385803000|ref|YP_005839400.1| - 0.36 10.9 0.2 0.36 10.9 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) A2L_zn_ribbon PF08792.5 gi|385803000|ref|YP_005839400.1| - 0.62 9.5 2.5 15 5.2 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-NADH-PPase PF09297.6 gi|385803000|ref|YP_005839400.1| - 1.1 8.8 3.6 19 4.8 0.6 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain FYDLN_acid PF09538.5 gi|385803001|ref|YP_005839401.1| - 0.1 13.1 4.7 0.15 12.6 3.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) TP_methylase PF00590.15 gi|385803002|ref|YP_005839402.1| - 6.3e-20 71.7 1.0 6.3e-20 71.7 0.7 1.6 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Exosortase_EpsH PF09721.5 gi|385803003|ref|YP_005839403.1| - 8.3e-53 179.2 26.7 1e-52 178.9 18.5 1.0 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) PgaD PF13994.1 gi|385803003|ref|YP_005839403.1| - 1.6 8.2 5.9 0.24 10.8 0.8 2.2 2 1 0 2 2 2 0 PgaD-like protein Glyoxalase_2 PF12681.2 gi|385803004|ref|YP_005839404.1| - 5.1e-25 88.1 4.9 6.7e-15 55.6 0.1 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|385803004|ref|YP_005839404.1| - 2.6e-17 63.0 4.0 7.3e-12 45.3 0.2 2.7 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|385803004|ref|YP_005839404.1| - 3.7e-14 52.6 4.1 8.1e-06 25.8 0.2 3.6 2 2 2 4 4 4 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|385803004|ref|YP_005839404.1| - 2.2e-05 24.4 2.2 0.051 13.4 0.1 3.8 2 2 0 2 2 2 2 Glyoxalase-like domain Fis1_TPR_N PF14852.1 gi|385803005|ref|YP_005839405.1| - 0.059 12.6 0.0 0.63 9.3 0.0 2.2 2 0 0 2 2 2 0 Fis1 N-terminal tetratricopeptide repeat MMR_HSR1 PF01926.18 gi|385803006|ref|YP_005839406.1| - 1.1e-20 73.7 0.0 2.2e-20 72.7 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|385803006|ref|YP_005839406.1| - 2.4e-13 49.6 0.8 1.3e-12 47.3 0.0 2.2 2 0 0 2 2 2 1 Ferrous iron transport protein B TGS PF02824.16 gi|385803006|ref|YP_005839406.1| - 2.6e-12 46.3 0.0 5e-12 45.4 0.0 1.5 1 0 0 1 1 1 1 TGS domain Dynamin_N PF00350.18 gi|385803006|ref|YP_005839406.1| - 0.00034 20.4 0.0 0.56 9.9 0.1 2.5 1 1 1 2 2 2 2 Dynamin family AIG1 PF04548.11 gi|385803006|ref|YP_005839406.1| - 0.00046 19.3 0.1 0.00093 18.3 0.0 1.6 2 0 0 2 2 2 1 AIG1 family DUF258 PF03193.11 gi|385803006|ref|YP_005839406.1| - 0.0047 16.1 0.0 0.027 13.6 0.0 2.4 3 0 0 3 3 3 1 Protein of unknown function, DUF258 ArgK PF03308.11 gi|385803006|ref|YP_005839406.1| - 0.0047 15.7 0.1 0.02 13.6 0.0 2.0 2 0 0 2 2 2 1 ArgK protein Miro PF08477.8 gi|385803006|ref|YP_005839406.1| - 0.0072 16.8 0.0 0.025 15.0 0.0 2.0 2 1 0 2 2 1 1 Miro-like protein GTP_EFTU PF00009.22 gi|385803006|ref|YP_005839406.1| - 0.021 14.2 0.1 1.2 8.5 0.0 3.0 2 1 1 3 3 3 0 Elongation factor Tu GTP binding domain cobW PF02492.14 gi|385803006|ref|YP_005839406.1| - 0.027 13.9 0.4 2.7 7.3 0.0 2.7 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain Arf PF00025.16 gi|385803006|ref|YP_005839406.1| - 0.047 12.9 0.1 0.22 10.7 0.0 2.1 2 1 0 2 2 2 0 ADP-ribosylation factor family MobB PF03205.9 gi|385803006|ref|YP_005839406.1| - 0.057 13.1 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|385803006|ref|YP_005839406.1| - 0.066 12.7 0.0 8.9 5.7 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein PduV-EutP PF10662.4 gi|385803006|ref|YP_005839406.1| - 0.13 11.7 0.0 1.3 8.5 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation DUF4173 PF13777.1 gi|385803008|ref|YP_005839408.1| - 0.019 14.2 2.5 0.024 13.9 1.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4173) Cyt_c_ox_IV PF12270.3 gi|385803008|ref|YP_005839408.1| - 0.041 13.6 0.3 0.041 13.6 0.2 2.2 1 1 1 2 2 2 0 Cytochrome c oxidase subunit IV DUF4345 PF14248.1 gi|385803008|ref|YP_005839408.1| - 0.059 12.8 10.2 0.094 12.1 7.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4345) Peptidase_A8 PF01252.13 gi|385803008|ref|YP_005839408.1| - 0.31 10.6 2.3 0.35 10.4 1.3 1.3 1 1 0 1 1 1 0 Signal peptidase (SPase) II DUF3325 PF11804.3 gi|385803008|ref|YP_005839408.1| - 0.9 9.5 11.3 1.2 9.1 7.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3325) Wzy_C PF04932.10 gi|385803008|ref|YP_005839408.1| - 4.4 7.0 6.0 7.4 6.3 4.2 1.5 1 1 0 1 1 1 0 O-Antigen ligase AzlD PF05437.7 gi|385803009|ref|YP_005839409.1| - 0.036 14.0 1.2 0.045 13.6 0.8 1.2 1 0 0 1 1 1 0 Branched-chain amino acid transport protein (AzlD) DUF4131 PF13567.1 gi|385803009|ref|YP_005839409.1| - 0.064 12.6 0.0 0.073 12.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) COX1 PF00115.15 gi|385803010|ref|YP_005839410.1| - 2e-156 521.1 59.8 3e-156 520.5 41.4 1.2 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I Pex14_N PF04695.8 gi|385803011|ref|YP_005839411.1| - 0.00017 21.6 2.4 0.00022 21.2 1.7 1.1 1 0 0 1 1 1 1 Peroxisomal membrane anchor protein (Pex14p) conserved region Sporozoite_P67 PF05642.6 gi|385803011|ref|YP_005839411.1| - 0.03 12.2 0.4 0.033 12.0 0.3 1.0 1 0 0 1 1 1 0 Sporozoite P67 surface antigen PrgI PF12666.2 gi|385803011|ref|YP_005839411.1| - 0.059 13.5 1.7 0.089 12.9 0.9 1.4 1 1 0 1 1 1 0 PrgI family protein DUF4366 PF14283.1 gi|385803011|ref|YP_005839411.1| - 0.059 12.7 0.1 0.084 12.2 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) FtsX PF02687.16 gi|385803011|ref|YP_005839411.1| - 0.91 9.2 7.6 1.3 8.7 5.2 1.2 1 0 0 1 1 1 0 FtsX-like permease family Usp PF00582.21 gi|385803012|ref|YP_005839412.1| - 6.1e-22 78.3 0.3 7.2e-22 78.1 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family Thioredoxin PF00085.15 gi|385803013|ref|YP_005839413.1| - 1.3e-10 40.9 0.0 2.2e-10 40.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Methyltransf_22 PF13383.1 gi|385803013|ref|YP_005839413.1| - 0.032 13.7 0.3 0.47 9.9 0.0 2.1 1 1 1 2 2 2 0 Methyltransferase domain ABC_tran PF00005.22 gi|385803014|ref|YP_005839414.1| - 1.3e-29 103.2 0.0 2.1e-29 102.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385803014|ref|YP_005839414.1| - 5.7e-08 33.0 0.1 0.0099 15.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|385803014|ref|YP_005839414.1| - 0.00058 19.7 0.3 0.0037 17.1 0.2 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|385803014|ref|YP_005839414.1| - 0.00087 19.6 0.0 0.0014 18.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|385803014|ref|YP_005839414.1| - 0.0033 17.1 0.4 0.73 9.6 0.1 2.5 2 0 0 2 2 2 1 Part of AAA domain AAA_22 PF13401.1 gi|385803014|ref|YP_005839414.1| - 0.0046 17.1 0.3 0.24 11.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|385803014|ref|YP_005839414.1| - 0.0063 15.9 0.8 0.14 11.5 0.6 2.2 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|385803014|ref|YP_005839414.1| - 0.0073 14.8 0.2 0.056 11.9 0.0 2.2 2 1 1 3 3 3 1 AAA domain AAA_29 PF13555.1 gi|385803014|ref|YP_005839414.1| - 0.012 15.1 0.0 0.025 14.1 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.14 gi|385803014|ref|YP_005839414.1| - 0.019 14.2 0.3 0.69 9.1 0.2 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain UPF0079 PF02367.12 gi|385803014|ref|YP_005839414.1| - 0.019 14.5 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ABC_ATPase PF09818.4 gi|385803014|ref|YP_005839414.1| - 0.057 11.9 0.8 4.4 5.7 0.0 2.4 3 0 0 3 3 3 0 Predicted ATPase of the ABC class AAA_16 PF13191.1 gi|385803014|ref|YP_005839414.1| - 0.089 12.7 0.7 0.28 11.1 0.1 1.9 2 0 0 2 2 2 0 AAA ATPase domain Miro PF08477.8 gi|385803014|ref|YP_005839414.1| - 0.11 12.9 0.0 0.31 11.5 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein DUF258 PF03193.11 gi|385803014|ref|YP_005839414.1| - 0.12 11.5 0.0 0.2 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SRP54 PF00448.17 gi|385803014|ref|YP_005839414.1| - 0.12 11.7 0.2 0.31 10.4 0.1 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain NACHT PF05729.7 gi|385803014|ref|YP_005839414.1| - 0.14 11.8 0.2 0.49 10.0 0.0 1.8 2 0 0 2 2 2 0 NACHT domain NB-ARC PF00931.17 gi|385803014|ref|YP_005839414.1| - 0.14 10.9 0.0 0.25 10.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.1 gi|385803014|ref|YP_005839414.1| - 0.22 11.1 0.1 0.22 11.1 0.1 1.8 3 0 0 3 3 3 0 AAA domain ABC_tran PF00005.22 gi|385803015|ref|YP_005839415.1| - 2.8e-30 105.4 0.0 3.7e-30 105.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|385803015|ref|YP_005839415.1| - 7.5e-12 44.6 0.8 1.6e-11 43.6 0.5 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.1 gi|385803015|ref|YP_005839415.1| - 1.1e-07 32.1 0.3 0.0019 18.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|385803015|ref|YP_005839415.1| - 4.8e-06 26.0 0.0 8.5e-06 25.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|385803015|ref|YP_005839415.1| - 0.00042 20.2 0.2 0.0017 18.3 0.2 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_16 PF13191.1 gi|385803015|ref|YP_005839415.1| - 0.00061 19.8 0.1 0.025 14.5 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|385803015|ref|YP_005839415.1| - 0.00062 18.9 0.0 0.00099 18.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|385803015|ref|YP_005839415.1| - 0.0064 16.8 0.0 0.0095 16.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|385803015|ref|YP_005839415.1| - 0.0068 17.2 0.0 0.021 15.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|385803015|ref|YP_005839415.1| - 0.01 14.9 0.1 0.17 10.9 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|385803015|ref|YP_005839415.1| - 0.049 13.7 0.0 0.089 12.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|385803015|ref|YP_005839415.1| - 0.052 12.9 0.0 0.094 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_19 PF13245.1 gi|385803015|ref|YP_005839415.1| - 0.054 13.2 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain DUF87 PF01935.12 gi|385803015|ref|YP_005839415.1| - 0.057 13.2 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 SMC_N PF02463.14 gi|385803015|ref|YP_005839415.1| - 0.063 12.5 0.5 0.13 11.4 0.3 1.8 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain RNA_helicase PF00910.17 gi|385803015|ref|YP_005839415.1| - 0.066 13.3 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.7 gi|385803015|ref|YP_005839415.1| - 0.079 12.0 0.0 0.14 11.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.24 gi|385803015|ref|YP_005839415.1| - 0.086 13.0 0.0 0.21 11.7 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.1 gi|385803015|ref|YP_005839415.1| - 0.19 10.1 0.0 0.24 9.8 0.0 1.1 1 0 0 1 1 1 0 AAA domain BPD_transp_2 PF02653.11 gi|385803016|ref|YP_005839416.1| - 2.6e-35 121.7 38.1 3.4e-35 121.3 25.9 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|385803017|ref|YP_005839417.1| - 1.8e-31 109.1 37.4 2.4e-31 108.6 25.9 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.1 gi|385803018|ref|YP_005839418.1| - 2.9e-59 201.1 9.3 3.7e-59 200.7 6.5 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|385803018|ref|YP_005839418.1| - 1e-19 70.5 0.2 1.5e-19 70.0 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|385803018|ref|YP_005839418.1| - 2.6e-09 36.3 0.8 4.2e-09 35.6 0.5 1.3 1 0 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.4 gi|385803018|ref|YP_005839418.1| - 1.2 9.3 8.6 16 5.8 5.9 2.7 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Acetyltransf_1 PF00583.19 gi|385803019|ref|YP_005839419.1| - 4.4e-13 49.0 0.0 7.7e-13 48.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|385803019|ref|YP_005839419.1| - 3.7e-09 36.7 0.1 9.2e-09 35.4 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|385803019|ref|YP_005839419.1| - 1.2e-08 34.9 0.0 2.4e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|385803019|ref|YP_005839419.1| - 1.2e-05 25.3 0.0 1.9e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|385803019|ref|YP_005839419.1| - 0.00023 20.8 0.0 0.00047 19.8 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|385803019|ref|YP_005839419.1| - 0.001 19.2 0.0 0.0016 18.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|385803019|ref|YP_005839419.1| - 0.028 14.2 0.1 0.15 11.9 0.0 2.2 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain Polyketide_cyc2 PF10604.4 gi|385803020|ref|YP_005839420.1| - 0.0021 18.2 1.9 0.0027 17.8 1.2 1.3 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Thioredoxin_4 PF13462.1 gi|385803021|ref|YP_005839421.1| - 1.1e-16 61.2 0.0 1.4e-16 60.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|385803021|ref|YP_005839421.1| - 6.5e-06 26.3 0.0 1.9e-05 24.7 0.0 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.15 gi|385803021|ref|YP_005839421.1| - 0.0028 17.2 0.1 0.014 14.9 0.1 1.9 2 0 0 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin PF00085.15 gi|385803021|ref|YP_005839421.1| - 0.13 11.9 0.0 8.4 6.1 0.0 2.3 2 0 0 2 2 2 0 Thioredoxin Met_10 PF02475.11 gi|385803023|ref|YP_005839423.1| - 1.2e-55 188.2 0.0 1.6e-55 187.8 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|385803023|ref|YP_005839423.1| - 1.5e-09 37.9 0.0 3e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385803023|ref|YP_005839423.1| - 1.6e-07 31.8 0.1 4.3e-07 30.5 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|385803023|ref|YP_005839423.1| - 3.1e-07 29.9 0.0 5.1e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.5 gi|385803023|ref|YP_005839423.1| - 1e-06 28.4 0.0 1.5e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_31 PF13847.1 gi|385803023|ref|YP_005839423.1| - 4.3e-06 26.3 0.0 8.5e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|385803023|ref|YP_005839423.1| - 0.00013 21.6 0.0 0.00023 20.7 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.10 gi|385803023|ref|YP_005839423.1| - 0.00014 21.2 0.0 0.0003 20.2 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 tRNA_U5-meth_tr PF05958.6 gi|385803023|ref|YP_005839423.1| - 0.00054 18.7 0.0 0.00084 18.1 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase RrnaAD PF00398.15 gi|385803023|ref|YP_005839423.1| - 0.0017 17.4 0.0 0.0026 16.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.8 gi|385803023|ref|YP_005839423.1| - 0.0044 16.1 0.1 0.0084 15.2 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) DNA_methylase PF00145.12 gi|385803023|ref|YP_005839423.1| - 0.01 14.9 0.0 0.016 14.3 0.0 1.3 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Methyltransf_23 PF13489.1 gi|385803023|ref|YP_005839423.1| - 0.018 14.8 0.0 0.034 13.8 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|385803023|ref|YP_005839423.1| - 0.031 14.7 0.0 0.073 13.5 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain TRM PF02005.11 gi|385803023|ref|YP_005839423.1| - 0.13 11.1 1.0 0.78 8.5 0.2 2.0 1 1 1 2 2 2 0 N2,N2-dimethylguanosine tRNA methyltransferase TFIIB PF00382.14 gi|385803024|ref|YP_005839424.1| - 3.5e-37 126.0 0.1 8e-19 67.2 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|385803024|ref|YP_005839424.1| - 6e-19 67.0 3.6 1.4e-18 65.9 2.5 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.14 gi|385803024|ref|YP_005839424.1| - 0.0021 17.9 0.0 0.026 14.4 0.0 2.2 1 1 0 2 2 2 1 Cyclin, C-terminal domain Cyclin_N PF00134.18 gi|385803024|ref|YP_005839424.1| - 0.004 16.7 0.0 0.06 12.9 0.0 2.2 2 0 0 2 2 2 1 Cyclin, N-terminal domain HTH_Tnp_ISL3 PF13542.1 gi|385803024|ref|YP_005839424.1| - 0.0056 15.8 0.3 2 7.6 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.7 gi|385803024|ref|YP_005839424.1| - 0.01 15.2 0.0 0.036 13.5 0.0 2.0 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|385803024|ref|YP_005839424.1| - 0.012 14.9 0.1 0.18 11.1 0.0 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 RRN7 PF11781.3 gi|385803024|ref|YP_005839424.1| - 0.025 14.0 0.6 0.05 13.1 0.4 1.5 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 Zn_Tnp_IS1 PF03811.8 gi|385803024|ref|YP_005839424.1| - 0.03 13.8 0.9 0.055 12.9 0.1 1.9 2 0 0 2 2 1 0 InsA N-terminal domain zf-ribbon_3 PF13248.1 gi|385803024|ref|YP_005839424.1| - 0.039 13.1 0.3 0.066 12.4 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|385803024|ref|YP_005839424.1| - 0.06 13.6 1.1 0.06 13.6 0.8 2.2 3 0 0 3 3 1 0 Restriction alleviation protein Lar Ribosomal_S27e PF01667.12 gi|385803024|ref|YP_005839424.1| - 0.14 11.7 0.5 0.24 10.9 0.4 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 OrfB_Zn_ribbon PF07282.6 gi|385803024|ref|YP_005839424.1| - 1 9.0 3.1 2.5 7.8 2.1 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain ABC_tran PF00005.22 gi|385803025|ref|YP_005839425.1| - 9e-30 103.7 0.2 3.5e-29 101.8 0.0 2.0 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|385803025|ref|YP_005839425.1| - 1.2e-09 38.6 1.0 1.5e-06 28.4 0.1 2.4 2 1 0 2 2 1 1 AAA domain SMC_N PF02463.14 gi|385803025|ref|YP_005839425.1| - 4.9e-06 25.9 0.1 1.8e-05 24.1 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|385803025|ref|YP_005839425.1| - 1.3e-05 25.6 0.0 2.8e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|385803025|ref|YP_005839425.1| - 0.0037 16.3 0.2 1.1 8.2 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA PF00004.24 gi|385803025|ref|YP_005839425.1| - 0.0054 16.9 0.7 0.085 13.0 0.0 3.1 2 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) cobW PF02492.14 gi|385803025|ref|YP_005839425.1| - 0.0063 15.9 0.4 0.056 12.8 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.1 gi|385803025|ref|YP_005839425.1| - 0.011 15.2 0.1 0.036 13.5 0.0 1.9 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|385803025|ref|YP_005839425.1| - 0.012 15.1 0.5 0.012 15.1 0.4 2.1 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|385803025|ref|YP_005839425.1| - 0.014 15.4 1.5 0.058 13.3 1.0 2.1 1 1 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|385803025|ref|YP_005839425.1| - 0.021 14.0 0.1 0.044 12.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|385803025|ref|YP_005839425.1| - 0.021 13.9 0.2 0.05 12.7 0.2 1.5 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.7 gi|385803025|ref|YP_005839425.1| - 0.022 14.3 0.6 0.53 9.9 0.1 2.3 2 0 0 2 2 2 0 NACHT domain AAA_22 PF13401.1 gi|385803025|ref|YP_005839425.1| - 0.024 14.7 1.1 0.31 11.1 0.5 2.5 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|385803025|ref|YP_005839425.1| - 0.04 12.7 0.3 0.18 10.6 0.1 2.0 2 0 0 2 2 2 0 NB-ARC domain AAA_17 PF13207.1 gi|385803025|ref|YP_005839425.1| - 0.044 14.5 0.1 0.11 13.3 0.1 1.9 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|385803025|ref|YP_005839425.1| - 0.074 12.9 0.0 0.46 10.4 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|385803025|ref|YP_005839425.1| - 0.11 12.3 0.3 0.62 9.9 0.0 2.4 3 0 0 3 3 3 0 AAA domain DUF1542 PF07564.6 gi|385803025|ref|YP_005839425.1| - 5.5 7.0 13.4 2.6 8.1 3.6 3.4 3 0 0 3 3 3 0 Domain of Unknown Function (DUF1542) FecCD PF01032.13 gi|385803026|ref|YP_005839426.1| - 5.6e-88 294.7 39.9 6.7e-88 294.4 27.6 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|385803026|ref|YP_005839426.1| - 1.4e-06 27.8 17.0 1.4e-06 27.8 11.8 2.2 1 1 1 2 2 2 1 ABC 3 transport family Nepo_coat_N PF03689.10 gi|385803026|ref|YP_005839426.1| - 0.12 12.1 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 Nepovirus coat protein, N-terminal domain Peripla_BP_2 PF01497.13 gi|385803027|ref|YP_005839427.1| - 5.4e-27 94.4 0.1 7.9e-27 93.9 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Thioredoxin PF00085.15 gi|385803028|ref|YP_005839428.1| - 1.3e-29 101.9 0.0 2.1e-29 101.2 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|385803028|ref|YP_005839428.1| - 2.1e-10 40.7 0.3 2.2e-09 37.4 0.0 2.3 2 1 0 2 2 2 1 Thioredoxin-like domain Thioredoxin_7 PF13899.1 gi|385803028|ref|YP_005839428.1| - 1.5e-07 31.3 0.1 4e-07 29.9 0.1 1.7 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_8 PF13905.1 gi|385803028|ref|YP_005839428.1| - 3.4e-07 30.2 0.1 0.00054 20.0 0.0 2.7 2 1 1 3 3 3 2 Thioredoxin-like Thioredoxin_9 PF14595.1 gi|385803028|ref|YP_005839428.1| - 3.7e-06 26.5 0.1 4.8e-06 26.1 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.1 gi|385803028|ref|YP_005839428.1| - 3.9e-05 23.2 0.4 6.3e-05 22.5 0.2 1.5 1 1 0 1 1 1 1 F plasmid transfer operon protein DSBA PF01323.15 gi|385803028|ref|YP_005839428.1| - 0.00011 21.8 0.2 0.0003 20.3 0.0 1.7 1 1 1 2 2 2 1 DSBA-like thioredoxin domain DUF836 PF05768.9 gi|385803028|ref|YP_005839428.1| - 0.00035 20.7 0.0 0.00069 19.8 0.0 1.5 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) AhpC-TSA PF00578.16 gi|385803028|ref|YP_005839428.1| - 0.00045 19.8 0.0 0.00066 19.3 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family HyaE PF07449.6 gi|385803028|ref|YP_005839428.1| - 0.0012 18.6 0.0 0.0026 17.6 0.0 1.5 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_5 PF13743.1 gi|385803028|ref|YP_005839428.1| - 0.0092 15.5 0.3 0.028 13.9 0.0 1.9 2 1 1 3 3 3 1 Thioredoxin Redoxin PF08534.5 gi|385803028|ref|YP_005839428.1| - 0.023 14.2 0.4 0.26 10.8 0.1 2.0 1 1 1 2 2 2 0 Redoxin TPX2 PF06886.6 gi|385803028|ref|YP_005839428.1| - 0.055 13.5 0.5 0.11 12.6 0.3 1.4 1 0 0 1 1 1 0 Targeting protein for Xklp2 (TPX2) Glutaredoxin PF00462.19 gi|385803028|ref|YP_005839428.1| - 0.11 12.4 0.4 0.35 10.9 0.0 2.0 2 1 0 2 2 2 0 Glutaredoxin DEAD PF00270.24 gi|385803030|ref|YP_005839430.1| - 6.8e-26 90.7 0.6 1.1e-24 86.8 0.0 2.5 2 1 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|385803030|ref|YP_005839430.1| - 1.1e-07 31.6 0.2 3.3e-07 30.0 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|385803030|ref|YP_005839430.1| - 1.4e-05 24.9 0.0 2.5e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DJ-1_PfpI PF01965.19 gi|385803030|ref|YP_005839430.1| - 0.026 13.9 0.2 0.17 11.3 0.1 2.4 2 0 0 2 2 2 0 DJ-1/PfpI family DUF433 PF04255.9 gi|385803030|ref|YP_005839430.1| - 0.057 12.8 0.0 0.13 11.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF433) Aminotran_1_2 PF00155.16 gi|385803031|ref|YP_005839431.1| - 2.9e-64 217.3 0.0 3.3e-64 217.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|385803031|ref|YP_005839431.1| - 1.9e-07 30.5 0.0 1.4e-06 27.6 0.0 1.9 2 0 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|385803031|ref|YP_005839431.1| - 6.2e-06 24.7 0.0 2e-05 23.0 0.0 1.7 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|385803031|ref|YP_005839431.1| - 0.00097 17.9 0.0 0.0016 17.2 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|385803031|ref|YP_005839431.1| - 0.0057 15.7 0.0 0.0092 15.0 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family DMRL_synthase PF00885.14 gi|385803032|ref|YP_005839432.1| - 9.8e-34 116.0 1.6 1.1e-33 115.8 1.1 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase PMT_2 PF13231.1 gi|385803033|ref|YP_005839433.1| - 3.5e-12 46.5 5.9 3.5e-12 46.5 4.1 3.3 4 1 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase TMEM190 PF15431.1 gi|385803033|ref|YP_005839433.1| - 0.13 12.1 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 Transmembrane protein 190 ATP-grasp PF02222.17 gi|385803034|ref|YP_005839434.1| - 2e-48 163.9 0.0 2.9e-48 163.4 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|385803034|ref|YP_005839434.1| - 5.7e-13 49.0 0.0 1.2e-12 47.9 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|385803034|ref|YP_005839434.1| - 5.4e-07 29.6 0.0 8e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|385803034|ref|YP_005839434.1| - 3.6e-06 25.9 0.0 0.00017 20.4 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon 2-Hacid_dh_C PF02826.14 gi|385803034|ref|YP_005839434.1| - 3.7e-05 22.9 0.0 6.7e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Dala_Dala_lig_C PF07478.8 gi|385803034|ref|YP_005839434.1| - 0.00015 21.2 0.0 0.00027 20.3 0.0 1.4 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus XdhC_C PF13478.1 gi|385803034|ref|YP_005839434.1| - 0.0024 18.1 0.1 0.0059 16.9 0.0 1.7 2 0 0 2 2 2 1 XdhC Rossmann domain 3HCDH_N PF02737.13 gi|385803034|ref|YP_005839434.1| - 0.0038 16.9 0.0 0.0097 15.5 0.0 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|385803034|ref|YP_005839434.1| - 0.045 14.1 0.0 0.12 12.7 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.10 gi|385803034|ref|YP_005839434.1| - 0.089 12.6 0.0 0.39 10.5 0.0 1.9 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase AIRC PF00731.15 gi|385803035|ref|YP_005839435.1| - 5.6e-52 175.0 0.4 6.9e-52 174.7 0.3 1.1 1 0 0 1 1 1 1 AIR carboxylase Peripla_BP_1 PF00532.16 gi|385803035|ref|YP_005839435.1| - 0.044 12.9 0.0 0.057 12.6 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family Oxidored_q4 PF00507.14 gi|385803036|ref|YP_005839436.1| - 2.6e-27 94.6 0.1 3.2e-27 94.3 0.0 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DuoxA PF10204.4 gi|385803036|ref|YP_005839436.1| - 0.42 9.6 5.1 0.12 11.4 1.7 1.4 2 0 0 2 2 2 0 Dual oxidase maturation factor DUF3188 PF11384.3 gi|385803036|ref|YP_005839436.1| - 0.56 9.8 4.1 14 5.3 1.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) Oxidored_q6 PF01058.17 gi|385803037|ref|YP_005839437.1| - 5.2e-22 77.8 0.2 7.8e-22 77.2 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Nuc_N PF14448.1 gi|385803037|ref|YP_005839437.1| - 0.13 11.8 0.2 25 4.5 0.0 3.1 3 0 0 3 3 3 0 Nuclease N terminal Complex1_49kDa PF00346.14 gi|385803038|ref|YP_005839438.1| - 6.5e-63 212.2 0.0 1.1e-40 139.3 0.0 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|385803038|ref|YP_005839438.1| - 4.5e-30 103.9 0.1 8.4e-30 103.0 0.0 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Autoind_bind PF03472.10 gi|385803038|ref|YP_005839438.1| - 0.023 13.9 1.2 0.092 12.0 0.1 2.2 1 1 1 2 2 2 0 Autoinducer binding domain NADHdh PF00146.16 gi|385803039|ref|YP_005839439.1| - 6.5e-79 265.2 9.7 8.2e-79 264.8 6.7 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.22 gi|385803040|ref|YP_005839440.1| - 1.5e-12 46.5 9.5 1.2e-06 27.8 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|385803040|ref|YP_005839440.1| - 2.3e-11 43.9 10.4 3.6e-11 43.2 7.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|385803040|ref|YP_005839440.1| - 1.5e-10 40.8 9.0 2e-10 40.3 6.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|385803040|ref|YP_005839440.1| - 7.3e-10 38.9 8.4 1.5e-09 37.9 5.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|385803040|ref|YP_005839440.1| - 1.1e-09 37.9 10.8 1.6e-09 37.3 7.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|385803040|ref|YP_005839440.1| - 1.9e-09 38.0 4.2 3.3e-05 24.5 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|385803040|ref|YP_005839440.1| - 5.6e-08 32.3 12.9 0.00042 20.0 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|385803040|ref|YP_005839440.1| - 7.2e-08 32.3 9.7 2.1e-07 30.8 7.1 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|385803040|ref|YP_005839440.1| - 9e-08 31.6 9.8 0.00019 21.1 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|385803040|ref|YP_005839440.1| - 1e-06 28.5 8.9 0.0038 17.4 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|385803040|ref|YP_005839440.1| - 1.2e-05 25.5 11.9 0.003 17.8 0.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|385803040|ref|YP_005839440.1| - 8.6e-05 23.0 4.5 0.097 13.2 0.5 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|385803040|ref|YP_005839440.1| - 0.00011 22.5 12.2 0.022 15.1 1.3 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|385803040|ref|YP_005839440.1| - 0.00018 21.8 14.7 0.0077 16.7 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|385803040|ref|YP_005839440.1| - 0.11 12.8 12.7 0.49 10.8 0.8 2.6 3 0 0 3 3 2 0 4Fe-4S single cluster domain Ecl1 PF12855.2 gi|385803040|ref|YP_005839440.1| - 0.95 8.8 4.7 4.8 6.5 0.2 2.3 2 0 0 2 2 2 0 Life-span regulatory factor Oxidored_q3 PF00499.15 gi|385803041|ref|YP_005839441.1| - 9.9e-14 51.3 7.1 9.9e-14 51.3 4.9 1.3 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.1 gi|385803041|ref|YP_005839441.1| - 0.001 18.9 10.9 0.001 18.9 7.5 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) YlaC PF10777.4 gi|385803041|ref|YP_005839441.1| - 3.8 7.0 6.0 2.8 7.4 3.5 1.3 1 1 0 1 1 1 0 Inner membrane protein YlaC Oxidored_q2 PF00420.19 gi|385803043|ref|YP_005839443.1| - 3.9e-21 74.4 7.1 4.2e-21 74.3 4.9 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Oxidored_q1 PF00361.15 gi|385803044|ref|YP_005839444.1| - 4.2e-74 249.2 11.5 4.2e-74 249.2 8.0 2.0 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|385803044|ref|YP_005839444.1| - 1.5e-12 46.9 0.5 3.7e-12 45.6 0.3 1.7 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|385803045|ref|YP_005839445.1| - 8.4e-65 218.7 22.5 8.4e-65 218.7 15.6 2.2 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q5_N PF01059.12 gi|385803045|ref|YP_005839445.1| - 0.00091 19.0 0.5 0.00091 19.0 0.3 3.4 2 1 1 3 3 3 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Tachykinin PF02202.11 gi|385803045|ref|YP_005839445.1| - 0.31 10.8 2.3 5.5 6.9 0.2 3.1 2 0 0 2 2 2 0 Tachykinin family Oxidored_q1 PF00361.15 gi|385803046|ref|YP_005839446.1| - 1e-58 198.7 11.8 1e-58 198.7 8.2 2.3 2 1 1 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|385803046|ref|YP_005839446.1| - 0.0065 16.0 4.3 0.0065 16.0 3.0 2.0 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF624 PF04854.9 gi|385803046|ref|YP_005839446.1| - 0.05 13.4 0.6 0.05 13.4 0.4 3.6 3 1 0 3 3 3 0 Protein of unknown function, DUF624 DHH PF01368.15 gi|385803047|ref|YP_005839447.1| - 1.2e-14 54.1 0.9 2.4e-14 53.1 0.2 1.8 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.14 gi|385803047|ref|YP_005839447.1| - 1.3e-10 40.7 0.1 3e-10 39.6 0.1 1.6 1 0 0 1 1 1 1 DHHA1 domain TrkA_N PF02254.13 gi|385803047|ref|YP_005839447.1| - 0.0065 16.4 0.1 0.029 14.3 0.0 2.2 2 0 0 2 2 2 1 TrkA-N domain CBS PF00571.23 gi|385803048|ref|YP_005839448.1| - 4.3e-22 77.6 3.8 1e-10 41.1 0.7 2.6 2 0 0 2 2 2 2 CBS domain ParBc PF02195.13 gi|385803048|ref|YP_005839448.1| - 2.9e-06 27.2 0.1 1e-05 25.5 0.0 2.0 2 1 0 2 2 2 1 ParB-like nuclease domain DUF1015 PF06245.6 gi|385803048|ref|YP_005839448.1| - 0.023 13.2 0.0 0.031 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1015) ParBc_2 PF08857.6 gi|385803048|ref|YP_005839448.1| - 0.032 14.0 0.1 0.35 10.6 0.0 2.2 1 1 0 1 1 1 0 Putative ParB-like nuclease Pyr_redox_2 PF07992.9 gi|385803050|ref|YP_005839450.1| - 2.9e-26 92.6 0.1 3.8e-26 92.2 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|385803050|ref|YP_005839450.1| - 1.1e-14 54.6 0.6 1.7e-12 47.5 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|385803050|ref|YP_005839450.1| - 2.3e-12 47.4 0.3 3.8e-10 40.1 0.0 2.7 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|385803050|ref|YP_005839450.1| - 2.6e-07 29.8 0.7 0.018 13.9 0.1 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|385803050|ref|YP_005839450.1| - 0.00021 20.2 6.0 0.0019 17.1 0.1 3.0 2 1 0 3 3 3 1 FAD binding domain HI0933_like PF03486.9 gi|385803050|ref|YP_005839450.1| - 0.0004 18.9 1.2 0.91 7.9 0.0 3.4 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|385803050|ref|YP_005839450.1| - 0.00041 20.3 0.0 0.0024 17.8 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.1 gi|385803050|ref|YP_005839450.1| - 0.0041 17.3 0.0 0.02 15.1 0.0 2.0 2 0 0 2 2 2 1 Putative NAD(P)-binding Trp_halogenase PF04820.9 gi|385803050|ref|YP_005839450.1| - 0.034 12.7 0.4 12 4.3 0.0 3.0 3 0 0 3 3 3 0 Tryptophan halogenase GIDA PF01134.17 gi|385803050|ref|YP_005839450.1| - 0.11 11.3 1.0 8.8 5.0 0.1 3.4 4 0 0 4 4 4 0 Glucose inhibited division protein A DUF357 PF04010.8 gi|385803051|ref|YP_005839451.1| - 3.4e-29 100.3 0.0 4e-29 100.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF357) Resolvase PF00239.16 gi|385803051|ref|YP_005839451.1| - 0.034 14.0 0.0 0.041 13.7 0.0 1.1 1 0 0 1 1 1 0 Resolvase, N terminal domain tRNA-synt_1e PF01406.14 gi|385803052|ref|YP_005839452.1| - 2e-100 335.8 0.6 1.2e-99 333.2 0.4 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|385803052|ref|YP_005839452.1| - 1.1e-09 37.5 0.1 0.00013 20.7 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.6 gi|385803052|ref|YP_005839452.1| - 1.9e-09 37.6 0.1 8.1e-09 35.6 0.0 2.2 2 0 0 2 2 2 1 DALR domain tRNA-synt_1f PF01921.13 gi|385803052|ref|YP_005839452.1| - 2.6e-09 36.2 0.2 2.3e-05 23.2 0.0 3.0 3 0 0 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.17 gi|385803052|ref|YP_005839452.1| - 3.1e-05 22.1 0.1 0.00096 17.2 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1d PF00750.14 gi|385803052|ref|YP_005839452.1| - 0.0025 16.6 0.4 0.27 10.0 0.1 2.9 3 0 0 3 3 3 1 tRNA synthetases class I (R) CbiX PF01903.12 gi|385803054|ref|YP_005839454.1| - 3.3e-40 136.4 0.4 3.7e-21 75.2 0.0 2.6 3 0 0 3 3 3 2 CbiX CbiK PF06180.6 gi|385803054|ref|YP_005839454.1| - 2.9e-07 29.8 0.1 0.0069 15.5 0.1 2.1 1 1 0 2 2 2 2 Cobalt chelatase (CbiK) Fumerase_C PF05683.7 gi|385803054|ref|YP_005839454.1| - 0.082 12.0 0.0 6 5.9 0.0 2.2 2 0 0 2 2 2 0 Fumarase C-terminus Trm112p PF03966.11 gi|385803057|ref|YP_005839457.1| - 2e-05 24.8 0.2 4.7e-05 23.6 0.1 1.6 1 1 0 1 1 1 1 Trm112p-like protein Adenylsucc_synt PF00709.16 gi|385803058|ref|YP_005839458.1| - 6.5e-144 479.6 0.0 7.4e-144 479.4 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase AICARFT_IMPCHas PF01808.13 gi|385803059|ref|YP_005839459.1| - 4.2e-83 279.0 0.1 5.8e-83 278.5 0.1 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme Formyl_trans_N PF00551.14 gi|385803059|ref|YP_005839459.1| - 4.6e-37 127.2 0.0 9.2e-37 126.3 0.0 1.5 1 0 0 1 1 1 1 Formyl transferase Lyase_1 PF00206.15 gi|385803060|ref|YP_005839460.1| - 4.3e-47 160.8 0.0 6.4e-47 160.2 0.0 1.3 1 0 0 1 1 1 1 Lyase ASL_C PF08328.6 gi|385803060|ref|YP_005839460.1| - 4.3e-39 132.9 0.0 7.2e-39 132.1 0.0 1.4 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal DUF3029 PF11230.3 gi|385803060|ref|YP_005839460.1| - 0.055 11.6 0.0 0.083 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3029) ADH_N PF08240.7 gi|385803061|ref|YP_005839461.1| - 1.2e-10 41.0 0.0 1.8e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|385803061|ref|YP_005839461.1| - 0.00069 19.1 0.0 0.0014 18.2 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Pribosyltran PF00156.22 gi|385803062|ref|YP_005839462.1| - 1.5e-20 73.1 0.1 2.9e-20 72.2 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|385803062|ref|YP_005839462.1| - 0.0011 18.1 0.1 0.0017 17.5 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase HTH_23 PF13384.1 gi|385803062|ref|YP_005839462.1| - 0.0017 17.9 0.0 0.0034 16.9 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain PRTase_2 PF15609.1 gi|385803062|ref|YP_005839462.1| - 0.0035 16.6 0.2 0.17 11.1 0.1 2.2 2 0 0 2 2 2 1 Phosphoribosyl transferase HTH_7 PF02796.10 gi|385803062|ref|YP_005839462.1| - 0.0039 17.0 0.0 0.0074 16.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_11 PF08279.7 gi|385803062|ref|YP_005839462.1| - 0.015 14.9 0.1 0.059 13.0 0.0 2.0 2 0 0 2 2 2 0 HTH domain Sigma70_r4 PF04545.11 gi|385803062|ref|YP_005839462.1| - 0.028 13.7 0.0 0.05 12.9 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|385803062|ref|YP_005839462.1| - 0.038 13.3 0.4 0.1 12.0 0.0 2.0 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|385803062|ref|YP_005839462.1| - 0.051 13.5 0.0 0.17 11.9 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.8 gi|385803062|ref|YP_005839462.1| - 0.1 12.0 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HTH_38 PF13936.1 gi|385803062|ref|YP_005839462.1| - 0.12 11.9 0.0 0.29 10.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Glutaredoxin PF00462.19 gi|385803063|ref|YP_005839463.1| - 6.3e-14 51.7 0.0 1.1e-13 50.9 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.1 gi|385803063|ref|YP_005839463.1| - 0.06 13.5 0.0 0.087 13.0 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain DUF4147 PF13660.1 gi|385803066|ref|YP_005839466.1| - 8.3e-68 228.0 0.6 8.3e-68 228.0 0.4 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|385803066|ref|YP_005839466.1| - 1.8e-26 92.3 3.3 3.7e-26 91.3 2.3 1.6 1 0 0 1 1 1 1 MOFRL family PAPS_reduct PF01507.14 gi|385803067|ref|YP_005839467.1| - 1.8e-18 66.9 0.0 1.1e-14 54.6 0.0 3.1 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family ATP_bind_4 PF01902.12 gi|385803067|ref|YP_005839467.1| - 0.0078 15.5 0.0 0.031 13.6 0.0 1.9 2 0 0 2 2 2 1 ATP-binding region ATP_bind_4 PF01902.12 gi|385803068|ref|YP_005839468.1| - 3e-53 180.4 0.0 8.3e-53 178.9 0.0 1.6 1 1 0 1 1 1 1 ATP-binding region Asn_synthase PF00733.16 gi|385803068|ref|YP_005839468.1| - 0.0016 17.9 0.1 0.0029 17.1 0.0 1.4 2 0 0 2 2 2 1 Asparagine synthase QueC PF06508.8 gi|385803068|ref|YP_005839468.1| - 0.023 13.9 0.0 0.031 13.5 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC NTP_transferase PF00483.18 gi|385803069|ref|YP_005839469.1| - 5e-36 124.2 0.0 6e-36 124.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|385803069|ref|YP_005839469.1| - 1.6e-10 41.3 0.0 2.1e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|385803069|ref|YP_005839469.1| - 0.011 15.3 0.0 0.034 13.6 0.0 1.8 2 0 0 2 2 2 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep PF00132.19 gi|385803069|ref|YP_005839469.1| - 0.17 11.4 0.6 2.6 7.7 0.0 2.9 4 0 0 4 4 4 0 Bacterial transferase hexapeptide (six repeats) zf-RING_3 PF14369.1 gi|385803070|ref|YP_005839470.1| - 0.9 9.5 3.4 14 5.7 0.3 2.5 2 0 0 2 2 2 0 zinc-finger Zn-ribbon_8 PF09723.5 gi|385803070|ref|YP_005839470.1| - 1.5 8.8 5.4 4.5 7.3 3.5 2.0 1 1 1 2 2 2 0 Zinc ribbon domain zf-trcl PF13451.1 gi|385803070|ref|YP_005839470.1| - 5.8 6.6 6.9 0.54 9.9 0.8 2.0 1 1 1 2 2 2 0 Probable zinc-binding domain Pribosyltran PF00156.22 gi|385803071|ref|YP_005839471.1| - 4.5e-21 74.8 1.8 7.6e-21 74.1 1.3 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|385803071|ref|YP_005839471.1| - 0.0025 17.0 0.1 0.0043 16.2 0.0 1.3 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_3 PF15610.1 gi|385803071|ref|YP_005839471.1| - 0.058 12.2 0.1 0.073 11.9 0.0 1.2 1 0 0 1 1 1 0 PRTase ComF-like PRTase_2 PF15609.1 gi|385803071|ref|YP_005839471.1| - 0.09 12.0 0.2 0.1 11.8 0.1 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase MoCo_carrier PF12694.2 gi|385803071|ref|YP_005839471.1| - 0.2 11.0 0.8 1.5 8.2 0.1 2.1 1 1 0 2 2 2 0 Putative molybdenum carrier EIIA-man PF03610.11 gi|385803071|ref|YP_005839471.1| - 0.32 11.0 1.8 3 7.9 0.3 2.3 1 1 1 2 2 2 0 PTS system fructose IIA component DUF1628 PF07790.6 gi|385803072|ref|YP_005839472.1| - 2.6e-21 76.1 1.1 4e-21 75.5 0.7 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1628) DUF4307 PF14155.1 gi|385803072|ref|YP_005839472.1| - 0.028 14.1 0.1 0.054 13.2 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) MNHE PF01899.11 gi|385803073|ref|YP_005839473.1| - 1.4e-34 118.9 1.2 2e-34 118.4 0.8 1.2 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit LptE PF04390.7 gi|385803073|ref|YP_005839473.1| - 0.077 12.7 1.1 0.32 10.7 0.0 2.2 2 0 0 2 2 2 0 Lipopolysaccharide-assembly MnhB PF04039.8 gi|385803073|ref|YP_005839473.1| - 0.52 10.3 5.4 0.093 12.7 1.2 1.7 2 0 0 2 2 2 0 Domain related to MnhB subunit of Na+/H+ antiporter DUF360 PF04020.8 gi|385803073|ref|YP_005839473.1| - 1 9.7 5.1 0.9 9.9 2.2 1.4 1 1 0 1 1 1 0 Membrane protein of unknown function MrpF_PhaF PF04066.8 gi|385803074|ref|YP_005839474.1| - 3.7e-17 62.3 4.4 3.7e-17 62.3 3.1 2.2 3 0 0 3 3 3 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF4117 PF13491.1 gi|385803074|ref|YP_005839474.1| - 0.047 13.1 2.2 0.049 13.0 0.9 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4117) DUF1109 PF06532.6 gi|385803074|ref|YP_005839474.1| - 0.13 11.6 4.6 0.16 11.3 3.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1109) Caps_synth_CapC PF14102.1 gi|385803074|ref|YP_005839474.1| - 0.14 12.2 6.8 0.1 12.6 0.6 2.1 1 1 1 2 2 2 0 Capsule biosynthesis CapC DUF3317 PF11779.3 gi|385803074|ref|YP_005839474.1| - 0.38 10.2 0.0 0.38 10.2 0.0 2.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3317) PhaG_MnhG_YufB PF03334.9 gi|385803075|ref|YP_005839475.1| - 2.3e-28 98.0 9.4 2.8e-28 97.7 6.5 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit YtpI PF14007.1 gi|385803075|ref|YP_005839475.1| - 0.0053 16.6 1.8 0.0068 16.2 1.2 1.2 1 0 0 1 1 1 1 YtpI-like protein PRA1 PF03208.14 gi|385803075|ref|YP_005839475.1| - 0.02 14.2 3.2 0.024 13.9 2.2 1.1 1 0 0 1 1 1 0 PRA1 family protein DUF4040 PF13244.1 gi|385803076|ref|YP_005839476.1| - 1.3e-19 69.9 14.1 1.3e-19 69.9 9.8 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF4040) YqhR PF11085.3 gi|385803076|ref|YP_005839476.1| - 0.69 9.4 3.8 1.1 8.7 2.6 1.3 1 0 0 1 1 1 0 Conserved membrane protein YqhR DUF2108 PF09881.4 gi|385803076|ref|YP_005839476.1| - 0.76 9.6 12.5 0.19 11.5 5.8 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2108) MnhB PF04039.8 gi|385803077|ref|YP_005839477.1| - 3.2e-19 69.1 18.4 4.2e-19 68.8 12.8 1.2 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Oxidored_q2 PF00420.19 gi|385803078|ref|YP_005839478.1| - 1e-22 79.5 1.8 1.2e-22 79.2 1.2 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.4 gi|385803078|ref|YP_005839478.1| - 0.0015 18.2 2.8 0.0015 18.2 1.9 1.8 2 0 0 2 2 2 1 Predicted membrane protein (DUF2108) Acyl_transf_3 PF01757.17 gi|385803078|ref|YP_005839478.1| - 0.055 12.2 1.9 0.077 11.8 1.1 1.4 1 1 0 1 1 1 0 Acyltransferase family Oxidored_q1 PF00361.15 gi|385803079|ref|YP_005839479.1| - 2.1e-53 181.3 14.9 2.1e-53 181.3 10.3 1.9 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|385803079|ref|YP_005839479.1| - 5.2e-06 25.7 8.3 5.2e-06 25.7 5.7 2.8 2 1 0 3 3 3 1 NADH dehydrogenase I, subunit N related protein Oxidored_q1_N PF00662.15 gi|385803079|ref|YP_005839479.1| - 0.045 13.3 0.4 0.15 11.6 0.0 2.2 2 0 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|385803080|ref|YP_005839480.1| - 2.8e-58 197.3 7.0 2.8e-58 197.3 4.8 1.9 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|385803080|ref|YP_005839480.1| - 0.0042 16.6 0.2 0.012 15.1 0.1 1.8 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|385803081|ref|YP_005839481.1| - 9.3e-43 146.4 9.4 9.3e-43 146.4 6.5 2.3 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains TMEM171 PF15471.1 gi|385803081|ref|YP_005839481.1| - 0.11 11.2 0.4 0.26 10.0 0.2 1.6 1 0 0 1 1 1 0 Transmembrane protein family 171 DFP PF04127.10 gi|385803082|ref|YP_005839482.1| - 2e-44 151.4 1.6 9.1e-44 149.2 0.1 2.2 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|385803082|ref|YP_005839482.1| - 1e-26 93.1 0.6 2.9e-26 91.6 0.1 2.0 2 0 0 2 2 2 1 Flavoprotein Polyketide_cyc2 PF10604.4 gi|385803083|ref|YP_005839483.1| - 3.7e-09 36.8 1.3 4.9e-09 36.4 0.9 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|385803083|ref|YP_005839483.1| - 7.7e-06 25.9 0.3 1.5e-05 24.9 0.1 1.6 2 1 0 2 2 2 1 Polyketide cyclase / dehydrase and lipid transport TrkA_N PF02254.13 gi|385803084|ref|YP_005839484.1| - 5.4e-49 165.0 10.0 4.7e-26 91.0 0.6 3.1 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|385803084|ref|YP_005839484.1| - 6.9e-27 92.8 10.5 4.7e-13 48.5 2.9 3.2 3 1 1 4 4 4 2 TrkA-C domain NAD_binding_7 PF13241.1 gi|385803084|ref|YP_005839484.1| - 1.4e-09 38.1 2.2 2.6e-05 24.4 0.3 2.8 2 0 0 2 2 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|385803084|ref|YP_005839484.1| - 6.9e-09 35.9 0.9 0.0025 17.9 0.1 2.4 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.14 gi|385803084|ref|YP_005839484.1| - 1.2e-06 27.8 0.6 0.005 15.9 0.0 2.5 3 0 0 3 3 3 2 FAD binding domain Saccharop_dh PF03435.13 gi|385803084|ref|YP_005839484.1| - 1.4e-06 27.5 2.4 0.0095 14.9 0.2 2.3 2 0 0 2 2 2 2 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|385803084|ref|YP_005839484.1| - 1.5e-06 28.5 1.8 0.03 14.7 0.1 3.7 2 1 1 3 3 3 2 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|385803084|ref|YP_005839484.1| - 3.6e-06 26.4 0.7 1.7e-05 24.3 0.4 2.3 2 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|385803084|ref|YP_005839484.1| - 7.7e-05 22.4 0.7 0.011 15.3 0.2 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.9 gi|385803084|ref|YP_005839484.1| - 0.00039 20.3 0.3 0.37 10.6 0.0 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.14 gi|385803084|ref|YP_005839484.1| - 0.00081 18.5 0.0 0.98 8.5 0.0 2.5 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|385803084|ref|YP_005839484.1| - 0.00083 18.8 0.1 0.0042 16.5 0.0 2.1 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|385803084|ref|YP_005839484.1| - 0.00085 19.0 0.0 0.039 13.6 0.0 2.5 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox PF00070.22 gi|385803084|ref|YP_005839484.1| - 0.0011 19.2 0.8 0.37 11.2 0.0 3.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HEM4 PF02602.10 gi|385803084|ref|YP_005839484.1| - 0.0033 16.7 0.1 0.015 14.5 0.0 2.1 1 1 1 2 2 2 1 Uroporphyrinogen-III synthase HemD NAD_binding_2 PF03446.10 gi|385803084|ref|YP_005839484.1| - 0.0034 17.2 0.2 3 7.6 0.0 2.6 2 0 0 2 2 2 2 NAD binding domain of 6-phosphogluconate dehydrogenase XdhC_C PF13478.1 gi|385803084|ref|YP_005839484.1| - 0.0067 16.7 0.6 0.77 10.0 0.0 2.9 3 1 0 3 3 2 1 XdhC Rossmann domain ThiF PF00899.16 gi|385803084|ref|YP_005839484.1| - 0.013 15.2 8.3 0.035 13.9 0.1 4.0 2 2 2 4 4 4 0 ThiF family Oxidored_nitro PF00148.14 gi|385803084|ref|YP_005839484.1| - 0.049 12.2 0.1 0.13 10.8 0.0 1.8 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase DAO PF01266.19 gi|385803084|ref|YP_005839484.1| - 0.057 12.3 6.4 0.058 12.2 0.8 3.1 3 1 0 3 3 3 0 FAD dependent oxidoreductase DUF2325 PF10087.4 gi|385803084|ref|YP_005839484.1| - 0.16 11.8 0.5 2.3 8.1 0.0 2.8 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2325) TrkH PF02386.11 gi|385803085|ref|YP_005839485.1| - 1.7e-55 188.0 12.2 2.5e-55 187.4 2.6 2.1 2 0 0 2 2 2 2 Cation transport protein Amidase PF01425.16 gi|385803086|ref|YP_005839486.1| - 2.3e-134 448.5 7.7 2.4e-132 441.9 5.4 2.0 1 1 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.10 gi|385803087|ref|YP_005839487.1| - 4.6e-19 67.9 2.9 1.1e-18 66.7 0.4 2.0 2 0 0 2 2 2 1 Glu-tRNAGln amidotransferase C subunit TFIIB PF00382.14 gi|385803088|ref|YP_005839488.1| - 6.4e-43 144.4 0.3 2.5e-20 72.0 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|385803088|ref|YP_005839488.1| - 8.9e-19 66.5 2.8 1.8e-18 65.5 2.0 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Ribosomal_S27e PF01667.12 gi|385803088|ref|YP_005839488.1| - 0.011 15.2 0.5 0.019 14.4 0.4 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 zf-ribbon_3 PF13248.1 gi|385803088|ref|YP_005839488.1| - 0.035 13.3 0.2 0.059 12.6 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|385803088|ref|YP_005839488.1| - 0.036 14.3 0.8 0.036 14.3 0.5 1.8 2 0 0 2 2 2 0 Restriction alleviation protein Lar Sigma70_r4 PF04545.11 gi|385803088|ref|YP_005839488.1| - 0.038 13.2 0.0 0.038 13.2 0.0 3.7 4 0 0 4 4 4 0 Sigma-70, region 4 RRN7 PF11781.3 gi|385803088|ref|YP_005839488.1| - 0.064 12.7 0.9 0.11 11.9 0.6 1.4 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 Cyclin_N PF00134.18 gi|385803088|ref|YP_005839488.1| - 0.084 12.4 0.1 1.4 8.4 0.0 2.3 2 0 0 2 2 2 0 Cyclin, N-terminal domain Rubredoxin PF00301.15 gi|385803088|ref|YP_005839488.1| - 0.13 12.1 0.5 9.6 6.1 0.0 2.5 2 0 0 2 2 2 0 Rubredoxin OrfB_Zn_ribbon PF07282.6 gi|385803088|ref|YP_005839488.1| - 0.14 11.8 0.9 0.31 10.7 0.6 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1 PF03811.8 gi|385803088|ref|YP_005839488.1| - 0.18 11.3 0.9 0.39 10.2 0.1 2.0 2 0 0 2 2 2 0 InsA N-terminal domain Zn-ribbon_8 PF09723.5 gi|385803088|ref|YP_005839488.1| - 4.4 7.3 5.9 3.1 7.8 0.6 2.3 1 1 1 2 2 2 0 Zinc ribbon domain NUDIX PF00293.23 gi|385803089|ref|YP_005839489.1| - 8.8e-12 44.8 0.0 1.2e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 NUDIX domain Staphylcoagulse PF04022.7 gi|385803089|ref|YP_005839489.1| - 0.017 14.5 0.4 0.03 13.6 0.3 1.4 1 0 0 1 1 1 0 Staphylocoagulase repeat Asn_synthase PF00733.16 gi|385803090|ref|YP_005839490.1| - 1.1e-33 116.8 0.0 1.8e-33 116.1 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase PHP_C PF13263.1 gi|385803091|ref|YP_005839491.1| - 1.6e-21 75.5 0.6 2.6e-20 71.6 0.2 2.2 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|385803091|ref|YP_005839491.1| - 5.7e-14 52.2 0.5 1.2e-13 51.2 0.3 1.5 1 1 0 1 1 1 1 PHP domain AIRS PF00586.19 gi|385803092|ref|YP_005839492.1| - 6.6e-41 138.4 12.2 2.1e-25 88.7 0.1 3.9 4 0 0 4 4 4 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|385803092|ref|YP_005839492.1| - 8.6e-35 120.0 2.9 1.9e-26 92.9 0.4 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain His_biosynth PF00977.16 gi|385803094|ref|YP_005839494.1| - 5.6e-77 258.0 0.1 6.4e-77 257.8 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|385803094|ref|YP_005839494.1| - 1.7e-06 27.1 0.0 0.00043 19.2 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|385803094|ref|YP_005839494.1| - 1e-05 24.7 0.9 0.00057 19.0 0.1 2.1 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|385803094|ref|YP_005839494.1| - 1.5e-05 24.3 1.1 0.00099 18.3 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase PcrB PF01884.12 gi|385803094|ref|YP_005839494.1| - 0.00068 18.9 0.1 0.0013 18.0 0.0 1.5 1 1 0 1 1 1 1 PcrB family IMPDH PF00478.20 gi|385803094|ref|YP_005839494.1| - 0.0039 16.1 0.2 0.0077 15.1 0.0 1.5 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.12 gi|385803094|ref|YP_005839494.1| - 0.035 13.0 0.0 0.054 12.4 0.0 1.2 1 0 0 1 1 1 0 Conserved region in glutamate synthase DHO_dh PF01180.16 gi|385803094|ref|YP_005839494.1| - 0.055 12.4 0.0 0.1 11.5 0.0 1.4 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase G3P_antiterm PF04309.7 gi|385803094|ref|YP_005839494.1| - 0.073 12.1 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.12 gi|385803094|ref|YP_005839494.1| - 0.11 11.6 0.1 0.63 9.1 0.0 2.1 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI RNA_pol_L_2 PF13656.1 gi|385803095|ref|YP_005839495.1| - 4.8e-15 54.7 0.0 5.8e-15 54.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|385803095|ref|YP_005839495.1| - 1.8e-05 23.7 0.0 2.3e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Lactamase_B PF00753.22 gi|385803096|ref|YP_005839496.1| - 8.8e-29 100.5 2.5 1.5e-28 99.8 1.7 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|385803096|ref|YP_005839496.1| - 2.3e-06 27.3 0.1 4.5e-06 26.3 0.1 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain AMP-binding PF00501.23 gi|385803098|ref|YP_005839498.1| - 1.2e-87 293.9 0.6 1.4e-87 293.7 0.4 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|385803098|ref|YP_005839498.1| - 2.5e-18 66.7 0.1 5.1e-18 65.7 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Metallophos_2 PF12850.2 gi|385803099|ref|YP_005839499.1| - 1.9e-14 53.7 1.0 3e-14 53.1 0.3 1.6 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|385803099|ref|YP_005839499.1| - 1.1e-11 44.5 1.8 1.8e-11 43.8 1.3 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Toxin_51 PF15531.1 gi|385803099|ref|YP_005839499.1| - 0.071 12.9 1.4 0.17 11.6 1.0 1.7 1 0 0 1 1 1 0 Putative toxin 51 AAA_23 PF13476.1 gi|385803100|ref|YP_005839500.1| - 2.5e-21 76.9 11.1 2.5e-21 76.9 7.7 6.0 1 1 1 2 2 1 1 AAA domain AAA_21 PF13304.1 gi|385803100|ref|YP_005839500.1| - 2.2e-14 54.0 5.4 1.2e-09 38.6 0.9 2.8 3 0 0 3 3 3 2 AAA domain AAA_13 PF13166.1 gi|385803100|ref|YP_005839500.1| - 2.6e-13 49.3 68.3 1.7e-09 36.7 6.9 4.2 2 1 2 4 4 4 3 AAA domain SMC_N PF02463.14 gi|385803100|ref|YP_005839500.1| - 1.7e-12 47.0 49.0 8.7e-11 41.4 34.0 2.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|385803100|ref|YP_005839500.1| - 6.8e-08 31.9 0.2 1.5e-05 24.2 0.6 4.0 4 1 0 5 5 5 2 AAA ATPase domain DUF3584 PF12128.3 gi|385803100|ref|YP_005839500.1| - 1.1e-07 29.6 97.2 0.00021 18.8 28.5 4.0 3 1 1 4 4 4 3 Protein of unknown function (DUF3584) AAA_29 PF13555.1 gi|385803100|ref|YP_005839500.1| - 3.5e-05 23.2 0.0 7.5e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|385803100|ref|YP_005839500.1| - 0.00013 21.8 0.1 0.00082 19.2 0.0 2.5 2 0 0 2 2 2 1 Putative exonuclease SbcCD, C subunit DUF3450 PF11932.3 gi|385803100|ref|YP_005839500.1| - 0.0028 16.9 6.3 0.0028 16.9 4.3 6.8 2 2 6 8 8 7 1 Protein of unknown function (DUF3450) FliJ PF02050.11 gi|385803100|ref|YP_005839500.1| - 0.0083 16.1 5.1 0.0083 16.1 3.5 7.4 3 2 2 7 7 7 2 Flagellar FliJ protein IncA PF04156.9 gi|385803100|ref|YP_005839500.1| - 0.0087 15.6 108.0 0.27 10.8 7.0 5.6 1 1 3 5 5 5 2 IncA protein Laminin_II PF06009.7 gi|385803100|ref|YP_005839500.1| - 0.026 14.2 64.3 0.055 13.2 2.0 6.2 2 1 2 5 5 5 0 Laminin Domain II ABC_tran PF00005.22 gi|385803100|ref|YP_005839500.1| - 0.13 12.5 0.0 0.13 12.5 0.0 5.9 2 1 0 2 2 1 0 ABC transporter AAA_33 PF13671.1 gi|385803100|ref|YP_005839500.1| - 0.14 12.0 0.0 0.14 12.0 0.0 3.9 3 2 0 3 3 2 0 AAA domain Reo_sigmaC PF04582.7 gi|385803100|ref|YP_005839500.1| - 0.32 10.1 42.6 0.44 9.6 1.0 5.4 2 2 2 5 5 5 0 Reovirus sigma C capsid protein CENP-F_leu_zip PF10473.4 gi|385803100|ref|YP_005839500.1| - 0.79 9.5 105.9 0.019 14.8 4.2 7.1 2 2 4 6 6 6 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_22 PF13401.1 gi|385803100|ref|YP_005839500.1| - 0.79 9.8 0.0 0.79 9.8 0.0 3.7 4 2 0 4 4 4 0 AAA domain Atg14 PF10186.4 gi|385803100|ref|YP_005839500.1| - 1.2 7.9 86.5 0.19 10.6 10.9 5.2 1 1 4 5 5 5 0 UV radiation resistance protein and autophagy-related subunit 14 NPV_P10 PF05531.7 gi|385803100|ref|YP_005839500.1| - 1.3 9.2 42.6 0.078 13.2 1.5 7.8 4 2 3 7 7 7 0 Nucleopolyhedrovirus P10 protein AAA_27 PF13514.1 gi|385803100|ref|YP_005839500.1| - 7.8 4.0 110.1 0.59 7.7 0.0 4.7 2 1 0 2 2 1 0 AAA domain Phytase PF02333.10 gi|385803101|ref|YP_005839501.1| - 0.058 12.1 0.0 0.068 11.8 0.0 1.2 1 0 0 1 1 1 0 Phytase Zip PF02535.17 gi|385803102|ref|YP_005839502.1| - 0.22 10.5 1.1 5 6.0 1.1 1.9 1 1 1 2 2 2 0 ZIP Zinc transporter DNA_pol_B PF00136.16 gi|385803104|ref|YP_005839504.1| - 3.8e-48 164.4 0.0 1.8e-17 63.2 0.0 3.2 3 0 0 3 3 3 3 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|385803104|ref|YP_005839504.1| - 1.4e-28 99.7 0.0 4.6e-20 71.7 0.0 2.5 2 0 0 2 2 2 2 DNA polymerase family B, exonuclease domain Hint PF01079.15 gi|385803104|ref|YP_005839504.1| - 7.2e-12 44.9 0.0 1.5e-05 24.2 0.0 2.3 2 0 0 2 2 2 2 Hint module LAGLIDADG_3 PF14528.1 gi|385803104|ref|YP_005839504.1| - 2.4e-09 37.3 0.0 0.08 13.1 0.0 4.8 5 0 0 5 5 5 3 LAGLIDADG-like domain Hint_2 PF13403.1 gi|385803104|ref|YP_005839504.1| - 2.3e-08 34.0 0.1 3.7e-06 26.9 0.0 3.3 3 1 0 3 3 3 1 Hint domain PT-HINT PF07591.6 gi|385803104|ref|YP_005839504.1| - 4.6e-05 23.3 0.3 0.0025 17.7 0.0 3.4 3 0 0 3 3 3 1 Pretoxin HINT domain Hom_end_hint PF05203.11 gi|385803104|ref|YP_005839504.1| - 5.2e-05 23.0 0.1 0.0061 16.3 0.0 3.1 2 1 0 2 2 2 1 Hom_end-associated Hint Hom_end PF05204.9 gi|385803104|ref|YP_005839504.1| - 0.00027 20.8 0.0 0.014 15.3 0.0 3.0 3 0 0 3 3 3 1 Homing endonuclease Intein_splicing PF14890.1 gi|385803104|ref|YP_005839504.1| - 0.0015 17.5 0.3 1.9 7.2 0.0 4.2 4 0 0 4 4 4 1 Intein splicing domain ABC_tran PF00005.22 gi|385803105|ref|YP_005839505.1| - 1.7e-14 54.2 0.2 9.5e-14 51.8 0.2 2.0 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|385803105|ref|YP_005839505.1| - 2.4e-05 23.6 0.6 0.091 11.9 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|385803105|ref|YP_005839505.1| - 4.3e-05 23.6 0.2 0.00062 19.8 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|385803105|ref|YP_005839505.1| - 7.2e-05 23.5 2.4 0.00088 20.0 0.2 2.8 1 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|385803105|ref|YP_005839505.1| - 0.00037 20.7 0.1 0.13 12.4 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|385803105|ref|YP_005839505.1| - 0.00085 19.7 3.6 0.12 12.7 0.0 2.4 2 1 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|385803105|ref|YP_005839505.1| - 0.0021 17.7 0.5 1.2 8.8 0.0 2.6 2 1 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|385803105|ref|YP_005839505.1| - 0.0023 17.4 0.0 0.0043 16.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|385803105|ref|YP_005839505.1| - 0.0059 16.7 0.4 0.41 10.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|385803105|ref|YP_005839505.1| - 0.015 15.1 0.0 0.023 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|385803105|ref|YP_005839505.1| - 0.022 14.1 0.0 0.068 12.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|385803105|ref|YP_005839505.1| - 0.065 11.6 0.0 0.1 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|385803105|ref|YP_005839505.1| - 0.077 12.9 0.2 1.3 9.0 0.0 2.6 3 0 0 3 3 3 0 AAA domain AAA_18 PF13238.1 gi|385803105|ref|YP_005839505.1| - 2 8.7 5.3 3 8.1 2.2 2.4 2 1 0 2 2 2 0 AAA domain UPF0051 PF01458.12 gi|385803106|ref|YP_005839506.1| - 2.6e-69 233.1 0.5 3.6e-69 232.7 0.3 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.12 gi|385803107|ref|YP_005839507.1| - 5.5e-63 212.4 0.2 7.9e-63 211.9 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) HrpA_pilin PF09589.5 gi|385803108|ref|YP_005839508.1| - 0.041 14.3 0.0 0.16 12.3 0.0 1.9 1 1 1 2 2 2 0 HrpA pilus formation protein Rubrerythrin PF02915.12 gi|385803108|ref|YP_005839508.1| - 0.045 14.0 0.1 0.079 13.2 0.1 1.5 1 1 0 1 1 1 0 Rubrerythrin Fe_dep_repress PF01325.14 gi|385803109|ref|YP_005839509.1| - 1.4e-14 53.7 0.0 2.7e-14 52.8 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|385803109|ref|YP_005839509.1| - 1.6e-09 37.2 0.1 2.6e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_27 PF13463.1 gi|385803109|ref|YP_005839509.1| - 2.1e-05 24.7 0.1 6.1e-05 23.2 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|385803109|ref|YP_005839509.1| - 3.2e-05 23.4 0.0 5.4e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|385803109|ref|YP_005839509.1| - 7.4e-05 22.0 0.0 0.00014 21.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|385803109|ref|YP_005839509.1| - 0.00015 21.5 0.0 0.00034 20.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|385803109|ref|YP_005839509.1| - 0.00019 21.0 0.0 0.00033 20.2 0.0 1.4 1 0 0 1 1 1 1 MarR family FeoC PF09012.5 gi|385803109|ref|YP_005839509.1| - 0.0027 17.3 0.0 0.026 14.2 0.0 2.1 2 0 0 2 2 2 1 FeoC like transcriptional regulator HTH_Crp_2 PF13545.1 gi|385803109|ref|YP_005839509.1| - 0.0028 17.3 0.0 0.0053 16.5 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|385803109|ref|YP_005839509.1| - 0.0036 17.3 0.0 0.0071 16.4 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator TrmB PF01978.14 gi|385803109|ref|YP_005839509.1| - 0.0047 16.6 0.0 0.0088 15.7 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_13 PF11972.3 gi|385803109|ref|YP_005839509.1| - 0.011 15.5 0.0 0.022 14.6 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_12 PF08461.5 gi|385803109|ref|YP_005839509.1| - 0.033 13.9 0.3 0.097 12.4 0.0 2.0 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_45 PF14947.1 gi|385803109|ref|YP_005839509.1| - 0.043 13.6 0.0 0.067 13.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DUF4423 PF14394.1 gi|385803109|ref|YP_005839509.1| - 0.075 12.5 0.0 0.12 11.9 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HemN_C PF06969.11 gi|385803109|ref|YP_005839509.1| - 0.077 13.0 0.0 2.2 8.4 0.0 2.5 3 0 0 3 3 3 0 HemN C-terminal domain Ftsk_gamma PF09397.5 gi|385803109|ref|YP_005839509.1| - 0.092 12.4 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Ftsk gamma domain DUF1405 PF07187.6 gi|385803110|ref|YP_005839510.1| - 9.8e-53 178.2 12.0 1.4e-52 177.7 8.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) HD PF01966.17 gi|385803111|ref|YP_005839511.1| - 2.3e-12 46.9 0.3 1.2e-11 44.6 0.1 1.9 2 0 0 2 2 2 1 HD domain DUF305 PF03713.8 gi|385803111|ref|YP_005839511.1| - 0.043 13.6 0.5 0.099 12.4 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF305) Glu_synthase PF01645.12 gi|385803112|ref|YP_005839512.1| - 2.7e-153 510.2 0.4 1.4e-151 504.5 0.1 2.2 2 0 0 2 2 2 2 Conserved region in glutamate synthase GATase_2 PF00310.16 gi|385803112|ref|YP_005839512.1| - 4.4e-126 420.4 0.0 2e-125 418.2 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferases class-II Glu_syn_central PF04898.9 gi|385803112|ref|YP_005839512.1| - 7e-109 363.5 0.0 1.1e-108 362.9 0.0 1.3 1 0 0 1 1 1 1 Glutamate synthase central domain GXGXG PF01493.14 gi|385803112|ref|YP_005839512.1| - 1e-60 204.2 6.8 2e-60 203.2 4.7 1.5 1 0 0 1 1 1 1 GXGXG motif FMN_dh PF01070.13 gi|385803112|ref|YP_005839512.1| - 0.0013 17.6 3.4 0.076 11.8 1.1 3.1 3 0 0 3 3 3 1 FMN-dependent dehydrogenase HGTP_anticodon PF03129.15 gi|385803113|ref|YP_005839513.1| - 1.2e-22 79.6 0.1 2.1e-22 78.8 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|385803113|ref|YP_005839513.1| - 3.9e-17 62.3 0.0 8e-17 61.3 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) ProRS-C_1 PF09180.6 gi|385803113|ref|YP_005839513.1| - 3.5e-15 55.6 0.6 2.1e-08 33.9 0.0 2.6 2 0 0 2 2 2 2 Prolyl-tRNA synthetase, C-terminal Beta-Casp PF10996.3 gi|385803114|ref|YP_005839514.1| - 1.6e-33 115.3 0.0 3.3e-33 114.3 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|385803114|ref|YP_005839514.1| - 3.2e-23 82.4 3.6 6.4e-23 81.4 2.5 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|385803114|ref|YP_005839514.1| - 3.7e-13 49.0 0.0 1.6e-12 47.0 0.0 2.1 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|385803114|ref|YP_005839514.1| - 1.7e-12 47.3 0.3 2.9e-11 43.2 0.1 2.7 3 0 0 3 3 3 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|385803114|ref|YP_005839514.1| - 5.3e-08 32.3 0.0 3.3e-07 29.7 0.0 2.1 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.1 gi|385803114|ref|YP_005839514.1| - 6.2e-05 22.7 0.0 0.00017 21.3 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_1 PF00013.24 gi|385803114|ref|YP_005839514.1| - 6.7e-05 22.4 0.2 0.00017 21.1 0.1 1.7 1 0 0 1 1 1 1 KH domain KH_4 PF13083.1 gi|385803114|ref|YP_005839514.1| - 0.0067 16.0 0.1 0.016 14.8 0.1 1.6 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|385803114|ref|YP_005839514.1| - 0.012 15.2 1.1 0.029 14.0 0.8 1.6 1 0 0 1 1 1 0 KH domain DHquinase_II PF01220.14 gi|385803114|ref|YP_005839514.1| - 0.14 11.4 0.0 0.26 10.5 0.0 1.4 1 0 0 1 1 1 0 Dehydroquinase class II HpcH_HpaI PF03328.9 gi|385803118|ref|YP_005839518.1| - 4.2e-07 29.0 0.0 1.3e-06 27.4 0.0 1.7 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Toxin_65 PF15543.1 gi|385803118|ref|YP_005839518.1| - 0.12 11.9 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 Putative toxin 65 Glyoxalase_2 PF12681.2 gi|385803119|ref|YP_005839519.1| - 3.7e-15 56.4 0.3 4.4e-15 56.2 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|385803119|ref|YP_005839519.1| - 3.9e-15 55.9 0.2 4.6e-15 55.7 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|385803119|ref|YP_005839519.1| - 4.5e-11 42.7 0.2 7e-10 38.8 0.1 2.0 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|385803119|ref|YP_005839519.1| - 0.00039 20.3 0.1 0.026 14.4 0.0 2.1 2 0 0 2 2 2 1 Glyoxalase-like domain Acetyltransf_10 PF13673.1 gi|385803119|ref|YP_005839519.1| - 0.083 13.0 0.0 6.4 6.9 0.0 2.1 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain FAA_hydrolase PF01557.13 gi|385803120|ref|YP_005839520.1| - 1.1e-51 175.4 0.0 1.3e-51 175.1 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family UAF_Rrn10 PF05234.6 gi|385803121|ref|YP_005839521.1| - 0.051 13.6 0.9 0.063 13.3 0.6 1.1 1 0 0 1 1 1 0 UAF complex subunit Rrn10 CaATP_NAI PF12515.3 gi|385803121|ref|YP_005839521.1| - 0.64 9.5 2.4 15 5.1 0.0 2.8 3 0 0 3 3 3 0 Ca2+-ATPase N terminal autoinhibitory domain TrmB PF01978.14 gi|385803122|ref|YP_005839522.1| - 1e-15 57.1 0.0 1.4e-15 56.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|385803122|ref|YP_005839522.1| - 5.1e-06 26.0 0.0 8.2e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|385803122|ref|YP_005839522.1| - 6.1e-06 25.8 0.0 1.1e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|385803122|ref|YP_005839522.1| - 2.1e-05 24.0 0.0 3.4e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|385803122|ref|YP_005839522.1| - 5.3e-05 22.8 0.0 8.6e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|385803122|ref|YP_005839522.1| - 6e-05 22.7 0.0 0.0001 22.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|385803122|ref|YP_005839522.1| - 6.3e-05 23.0 0.0 9e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_24 PF13412.1 gi|385803122|ref|YP_005839522.1| - 0.00075 18.8 0.0 0.0014 17.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|385803122|ref|YP_005839522.1| - 0.0017 18.6 0.0 0.0025 18.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_38 PF13936.1 gi|385803122|ref|YP_005839522.1| - 0.0018 17.8 0.0 0.0032 16.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain RuvB_C PF05491.8 gi|385803122|ref|YP_005839522.1| - 0.002 17.6 0.0 0.0033 17.0 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB C-terminus HARE-HTH PF05066.8 gi|385803122|ref|YP_005839522.1| - 0.0061 16.8 0.0 0.015 15.6 0.0 1.6 1 0 0 1 1 1 1 HB1, ASXL, restriction endonuclease HTH domain HTH_5 PF01022.15 gi|385803122|ref|YP_005839522.1| - 0.0084 15.7 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_29 PF13551.1 gi|385803122|ref|YP_005839522.1| - 0.011 15.8 0.0 0.017 15.2 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn helix Rrf2 PF02082.15 gi|385803122|ref|YP_005839522.1| - 0.021 14.9 0.0 0.037 14.1 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator Rio2_N PF09202.6 gi|385803122|ref|YP_005839522.1| - 0.053 13.5 0.1 0.15 12.1 0.1 1.7 1 1 0 1 1 1 0 Rio2, N-terminal DUF387 PF04079.11 gi|385803122|ref|YP_005839522.1| - 0.054 12.8 0.3 0.25 10.7 0.0 2.0 1 1 1 2 2 2 0 Putative transcriptional regulators (Ypuh-like) HTH_23 PF13384.1 gi|385803122|ref|YP_005839522.1| - 0.059 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|385803122|ref|YP_005839522.1| - 0.064 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain eIF-1a PF01176.14 gi|385803123|ref|YP_005839523.1| - 7e-24 83.0 0.4 8.7e-24 82.7 0.3 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Glycos_transf_1 PF00534.15 gi|385803124|ref|YP_005839524.1| - 2.5e-08 33.5 0.0 4.2e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|385803124|ref|YP_005839524.1| - 4e-06 27.0 0.0 8.1e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|385803124|ref|YP_005839524.1| - 0.024 14.3 0.2 1.5 8.4 0.0 2.7 3 1 0 3 3 3 0 Glycosyltransferase Family 4 Aldo_ket_red PF00248.16 gi|385803125|ref|YP_005839525.1| - 2.6e-49 167.5 0.0 1.9e-47 161.4 0.0 2.1 2 0 0 2 2 2 2 Aldo/keto reductase family GFO_IDH_MocA PF01408.17 gi|385803125|ref|YP_005839525.1| - 3.5e-19 69.4 0.1 2.2e-18 66.9 0.0 2.3 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.11 gi|385803125|ref|YP_005839525.1| - 8.8e-09 35.7 0.2 2.2e-08 34.5 0.2 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|385803125|ref|YP_005839525.1| - 0.74 8.7 2.7 2.1 7.2 1.0 2.3 2 1 1 3 3 3 0 Saccharopine dehydrogenase CDP-OH_P_transf PF01066.16 gi|385803126|ref|YP_005839526.1| - 9.6e-13 48.3 2.2 9.6e-13 48.3 1.5 2.2 3 0 0 3 3 3 1 CDP-alcohol phosphatidyltransferase AAA_16 PF13191.1 gi|385803127|ref|YP_005839527.1| - 1.7e-12 47.7 0.5 1.1e-11 45.1 0.1 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|385803127|ref|YP_005839527.1| - 9.3e-09 35.5 0.0 3.1e-08 33.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|385803127|ref|YP_005839527.1| - 0.018 14.7 0.0 0.03 14.0 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase Phe_tRNA-synt_N PF02912.13 gi|385803127|ref|YP_005839527.1| - 0.02 14.6 0.0 0.19 11.4 0.0 2.2 2 0 0 2 2 2 0 Aminoacyl tRNA synthetase class II, N-terminal domain KAP_NTPase PF07693.9 gi|385803127|ref|YP_005839527.1| - 0.15 10.9 0.0 0.2 10.6 0.0 1.4 1 1 0 1 1 1 0 KAP family P-loop domain FGGY_N PF00370.16 gi|385803129|ref|YP_005839529.1| - 9.3e-74 247.8 0.0 1.3e-73 247.3 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|385803129|ref|YP_005839529.1| - 5.5e-56 189.3 2.4 8.6e-56 188.7 1.1 1.8 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|385803129|ref|YP_005839529.1| - 0.00043 19.6 0.3 0.0036 16.6 0.0 2.1 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family DAO PF01266.19 gi|385803130|ref|YP_005839530.1| - 5.3e-59 199.9 1.8 7.6e-59 199.4 1.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|385803130|ref|YP_005839530.1| - 7.1e-08 32.5 0.0 2.5e-05 24.2 0.0 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer2_BFD PF04324.10 gi|385803130|ref|YP_005839530.1| - 7.5e-08 32.3 1.5 2.1e-07 30.8 1.0 1.8 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain FAD_binding_2 PF00890.19 gi|385803130|ref|YP_005839530.1| - 3e-05 23.0 7.0 0.00022 20.2 4.9 2.0 1 1 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.13 gi|385803130|ref|YP_005839530.1| - 0.016 14.9 0.4 0.034 13.8 0.3 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.1 gi|385803130|ref|YP_005839530.1| - 0.02 14.9 0.2 1.4 8.9 0.1 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|385803130|ref|YP_005839530.1| - 0.046 13.7 1.1 0.14 12.1 0.6 1.9 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain NAD_binding_10 PF13460.1 gi|385803130|ref|YP_005839530.1| - 0.062 13.2 2.6 0.17 11.9 0.7 2.4 2 0 0 2 2 2 0 NADH(P)-binding Pyr_redox PF00070.22 gi|385803130|ref|YP_005839530.1| - 0.11 12.8 1.1 0.44 10.9 0.8 2.0 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|385803130|ref|YP_005839530.1| - 0.28 10.1 8.0 3.3 6.6 5.5 2.1 1 1 0 1 1 1 0 FAD binding domain Thi4 PF01946.12 gi|385803130|ref|YP_005839530.1| - 0.99 8.4 7.2 0.89 8.6 0.1 2.5 3 0 0 3 3 3 0 Thi4 family FAD_binding_2 PF00890.19 gi|385803131|ref|YP_005839531.1| - 9.8e-42 143.2 0.9 1.3e-41 142.8 0.6 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|385803131|ref|YP_005839531.1| - 3.9e-07 30.1 0.1 0.00074 19.4 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|385803131|ref|YP_005839531.1| - 1.3e-06 27.5 0.7 0.00027 19.9 0.4 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|385803131|ref|YP_005839531.1| - 3.8e-06 26.0 0.4 3.8e-06 26.0 0.3 2.4 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|385803131|ref|YP_005839531.1| - 0.00011 21.4 1.7 0.0002 20.5 0.8 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|385803131|ref|YP_005839531.1| - 0.00088 18.4 0.2 0.0033 16.5 0.2 1.7 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|385803131|ref|YP_005839531.1| - 0.0016 16.9 0.2 0.005 15.3 0.1 1.8 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|385803131|ref|YP_005839531.1| - 0.0027 17.6 1.1 0.016 15.1 0.3 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.13 gi|385803131|ref|YP_005839531.1| - 0.011 15.4 0.2 0.018 14.7 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|385803131|ref|YP_005839531.1| - 0.021 13.7 0.2 0.033 13.0 0.2 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Thi4 PF01946.12 gi|385803131|ref|YP_005839531.1| - 0.025 13.6 0.2 0.05 12.6 0.1 1.5 1 0 0 1 1 1 0 Thi4 family Pyr_redox PF00070.22 gi|385803131|ref|YP_005839531.1| - 0.03 14.7 0.0 0.099 13.0 0.1 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase CCG PF02754.11 gi|385803132|ref|YP_005839532.1| - 9.9e-20 70.3 0.9 2.1e-09 37.2 0.0 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|385803132|ref|YP_005839532.1| - 2.4e-08 33.8 7.0 2.4e-08 33.8 4.9 2.9 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|385803132|ref|YP_005839532.1| - 2.7e-07 30.8 6.5 2.7e-07 30.8 4.5 3.3 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|385803132|ref|YP_005839532.1| - 1.5e-06 28.5 4.6 0.0091 16.3 0.2 3.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|385803132|ref|YP_005839532.1| - 0.00017 21.7 14.0 0.0037 17.4 8.3 3.6 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|385803132|ref|YP_005839532.1| - 0.00044 20.9 9.5 0.042 14.5 0.2 3.5 4 0 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|385803132|ref|YP_005839532.1| - 0.0006 20.1 9.9 0.0006 20.1 6.8 2.8 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|385803132|ref|YP_005839532.1| - 0.00064 19.4 18.9 0.00085 19.0 9.1 3.4 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|385803132|ref|YP_005839532.1| - 0.0022 17.7 7.5 0.1 12.4 0.5 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain PhoU PF01895.14 gi|385803133|ref|YP_005839533.1| - 1.2e-32 112.1 8.6 2.9e-19 69.3 0.3 2.2 2 0 0 2 2 2 2 PhoU domain HrpB7 PF09486.5 gi|385803134|ref|YP_005839534.1| - 0.9 9.4 6.1 0.29 11.0 1.1 2.3 3 0 0 3 3 3 0 Bacterial type III secretion protein (HrpB7) PAS_9 PF13426.1 gi|385803135|ref|YP_005839535.1| - 6.6e-54 180.6 9.1 8.7e-13 48.5 0.0 6.8 6 0 0 6 6 6 6 PAS domain PAS_3 PF08447.6 gi|385803135|ref|YP_005839535.1| - 6.5e-37 125.5 11.7 4.6e-12 45.8 0.0 7.3 7 0 0 7 7 7 5 PAS fold PAS_4 PF08448.5 gi|385803135|ref|YP_005839535.1| - 4.8e-28 97.3 6.5 2.4e-05 24.3 0.0 7.9 7 0 0 7 7 7 6 PAS fold PAS PF00989.19 gi|385803135|ref|YP_005839535.1| - 1.5e-27 95.5 8.7 1.7e-06 27.7 0.0 8.4 7 2 0 7 7 7 4 PAS fold PAS_8 PF13188.1 gi|385803135|ref|YP_005839535.1| - 4.2e-25 86.6 0.5 4.4e-07 29.5 0.0 6.4 6 0 0 6 6 6 4 PAS domain HTH_10 PF04967.7 gi|385803135|ref|YP_005839535.1| - 2.4e-16 59.0 0.0 5.7e-16 57.8 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.1 gi|385803135|ref|YP_005839535.1| - 2.5e-10 41.0 5.5 8.2e-08 32.8 0.1 4.0 4 0 0 4 4 4 1 GAF domain GAF_3 PF13492.1 gi|385803135|ref|YP_005839535.1| - 1.6e-09 37.9 0.4 0.04 14.0 0.0 3.8 3 0 0 3 3 3 3 GAF domain GAF PF01590.21 gi|385803135|ref|YP_005839535.1| - 2.4e-05 24.5 0.6 0.00032 20.8 0.0 3.2 4 0 0 4 4 4 1 GAF domain HTH_22 PF13309.1 gi|385803135|ref|YP_005839535.1| - 0.0074 16.0 0.1 0.18 11.5 0.0 3.0 3 0 0 3 3 3 1 HTH domain TrmB PF01978.14 gi|385803136|ref|YP_005839536.1| - 6.1e-07 29.0 0.0 9e-07 28.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|385803136|ref|YP_005839536.1| - 1.3e-05 24.7 0.0 1.8e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|385803136|ref|YP_005839536.1| - 1.7e-05 24.3 0.0 3.1e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|385803136|ref|YP_005839536.1| - 3.4e-05 23.1 0.0 6.7e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|385803136|ref|YP_005839536.1| - 5.8e-05 22.8 0.0 0.00015 21.4 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|385803136|ref|YP_005839536.1| - 0.00089 18.8 0.0 0.0014 18.2 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_IclR PF09339.5 gi|385803136|ref|YP_005839536.1| - 0.0012 18.4 0.0 0.0019 17.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|385803136|ref|YP_005839536.1| - 0.0028 17.3 0.0 0.0059 16.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.1 gi|385803136|ref|YP_005839536.1| - 0.0037 17.2 0.0 0.0068 16.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.12 gi|385803136|ref|YP_005839536.1| - 0.0052 16.3 0.0 0.0079 15.8 0.0 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_AsnC-type PF13404.1 gi|385803136|ref|YP_005839536.1| - 0.0075 15.7 0.1 0.014 14.9 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_29 PF13551.1 gi|385803136|ref|YP_005839536.1| - 0.015 15.4 0.0 0.026 14.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix PadR PF03551.9 gi|385803136|ref|YP_005839536.1| - 0.022 14.5 0.0 0.034 13.9 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family GntR PF00392.16 gi|385803136|ref|YP_005839536.1| - 0.025 13.9 0.0 0.049 13.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_11 PF08279.7 gi|385803136|ref|YP_005839536.1| - 0.031 13.9 0.0 0.054 13.1 0.0 1.4 1 0 0 1 1 1 0 HTH domain FUR PF01475.14 gi|385803136|ref|YP_005839536.1| - 0.05 13.5 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_36 PF13730.1 gi|385803136|ref|YP_005839536.1| - 0.057 13.5 0.0 0.095 12.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|385803136|ref|YP_005839536.1| - 0.19 11.3 0.9 0.35 10.4 0.2 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|385803138|ref|YP_005839538.1| - 4.8e-06 26.2 0.1 6.7e-06 25.8 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|385803138|ref|YP_005839538.1| - 2.2e-05 23.7 0.0 3.4e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|385803138|ref|YP_005839538.1| - 0.00024 20.6 0.0 0.00035 20.0 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|385803138|ref|YP_005839538.1| - 0.00028 20.4 0.0 0.0004 19.9 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|385803138|ref|YP_005839538.1| - 0.00032 20.2 0.0 0.00048 19.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|385803138|ref|YP_005839538.1| - 0.0023 17.5 0.0 0.0037 16.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|385803138|ref|YP_005839538.1| - 0.0049 16.5 0.0 0.0078 15.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|385803138|ref|YP_005839538.1| - 0.01 15.4 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_36 PF13730.1 gi|385803138|ref|YP_005839538.1| - 0.056 13.5 0.0 0.086 12.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.9 gi|385803138|ref|YP_005839538.1| - 0.081 12.7 0.0 0.17 11.6 0.0 1.5 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family HTH_AsnC-type PF13404.1 gi|385803138|ref|YP_005839538.1| - 0.12 11.8 0.1 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_23 PF13384.1 gi|385803138|ref|YP_005839538.1| - 0.14 11.8 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain PP_kinase_C PF13090.1 gi|385803139|ref|YP_005839539.1| - 3.6e-153 509.3 0.0 5e-153 508.8 0.0 1.2 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain PP_kinase PF02503.12 gi|385803139|ref|YP_005839539.1| - 3.8e-65 219.2 4.2 6e-65 218.6 2.9 1.3 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.1 gi|385803139|ref|YP_005839539.1| - 8.1e-37 125.6 0.1 3e-36 123.8 0.0 2.1 2 0 0 2 2 2 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.1 gi|385803139|ref|YP_005839539.1| - 1e-10 41.4 0.0 3.4e-06 26.8 0.0 2.5 2 0 0 2 2 2 2 PLD-like domain zf-TFIIB PF13453.1 gi|385803141|ref|YP_005839541.1| - 0.00028 20.0 1.5 0.00048 19.2 1.1 1.4 1 0 0 1 1 1 1 Transcription factor zinc-finger DZR PF12773.2 gi|385803141|ref|YP_005839541.1| - 0.00059 19.5 0.4 0.0011 18.7 0.3 1.5 1 0 0 1 1 1 1 Double zinc ribbon zf-FPG_IleRS PF06827.9 gi|385803141|ref|YP_005839541.1| - 0.0011 18.5 1.0 0.0019 17.7 0.7 1.4 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS Lar_restr_allev PF14354.1 gi|385803141|ref|YP_005839541.1| - 0.0016 18.6 1.1 0.003 17.8 0.8 1.6 1 1 0 1 1 1 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|385803141|ref|YP_005839541.1| - 0.002 17.2 2.6 0.006 15.7 1.9 1.8 1 1 0 1 1 1 1 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|385803141|ref|YP_005839541.1| - 0.01 15.5 1.0 1.2 8.9 0.0 2.3 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|385803141|ref|YP_005839541.1| - 0.011 15.1 3.7 0.51 9.8 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF3994 PF13159.1 gi|385803141|ref|YP_005839541.1| - 0.014 15.6 3.8 0.019 15.1 2.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3994) UPF0547 PF10571.4 gi|385803141|ref|YP_005839541.1| - 0.015 14.9 1.0 0.039 13.6 0.7 1.6 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Elf1 PF05129.8 gi|385803141|ref|YP_005839541.1| - 0.045 13.4 0.1 0.07 12.8 0.0 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like DUF3797 PF12677.2 gi|385803141|ref|YP_005839541.1| - 0.064 12.8 0.1 1.2 8.8 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) DUF2387 PF09526.5 gi|385803141|ref|YP_005839541.1| - 0.064 13.1 1.4 0.11 12.3 0.1 1.9 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) Ribosomal_S27e PF01667.12 gi|385803141|ref|YP_005839541.1| - 0.1 12.1 0.7 0.15 11.6 0.5 1.2 1 0 0 1 1 1 0 Ribosomal protein S27 ComA PF02679.10 gi|385803141|ref|YP_005839541.1| - 0.14 11.1 0.0 0.15 11.0 0.0 1.1 1 0 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) OrfB_Zn_ribbon PF07282.6 gi|385803141|ref|YP_005839541.1| - 0.15 11.7 0.4 0.29 10.8 0.3 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|385803141|ref|YP_005839541.1| - 0.23 10.8 3.2 0.44 9.9 2.2 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding zf-NADH-PPase PF09297.6 gi|385803141|ref|YP_005839541.1| - 2.3 7.7 5.4 14 5.3 3.8 2.1 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Actin PF00022.14 gi|385803142|ref|YP_005839542.1| - 0.02 13.3 0.0 0.23 9.8 0.0 2.1 2 0 0 2 2 2 0 Actin AF1Q PF15017.1 gi|385803143|ref|YP_005839543.1| - 0.45 10.4 6.5 2.9 7.8 0.1 2.3 2 0 0 2 2 2 0 Drug resistance and apoptosis regulator DUF2721 PF11026.3 gi|385803143|ref|YP_005839543.1| - 3.5 7.2 7.4 3.3 7.3 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) DUF58 PF01882.13 gi|385803144|ref|YP_005839544.1| - 7.2e-17 61.3 0.1 1.5e-16 60.3 0.1 1.7 1 1 0 1 1 1 1 Protein of unknown function DUF58 VWA_2 PF13519.1 gi|385803144|ref|YP_005839544.1| - 3.9e-05 23.8 0.0 5.2e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|385803144|ref|YP_005839544.1| - 0.00037 19.6 0.0 0.019 14.1 0.0 2.1 2 0 0 2 2 2 2 VWA domain containing CoxE-like protein AAA_3 PF07726.6 gi|385803145|ref|YP_005839545.1| - 6.2e-62 207.0 0.1 9e-62 206.4 0.1 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|385803145|ref|YP_005839545.1| - 6.8e-11 42.0 0.0 1.1e-10 41.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|385803145|ref|YP_005839545.1| - 2.4e-07 29.8 0.0 2.1e-06 26.8 0.0 2.0 1 1 0 1 1 1 1 MCM2/3/5 family AAA PF00004.24 gi|385803145|ref|YP_005839545.1| - 2.3e-05 24.6 0.0 5.3e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|385803145|ref|YP_005839545.1| - 0.00054 19.0 0.1 0.0072 15.3 0.1 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|385803145|ref|YP_005839545.1| - 0.0011 18.4 0.0 0.0043 16.5 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|385803145|ref|YP_005839545.1| - 0.052 12.7 0.0 0.5 9.4 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF2570 PF10828.3 gi|385803146|ref|YP_005839546.1| - 0.098 12.2 1.3 0.8 9.3 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2570) Reo_sigmaC PF04582.7 gi|385803147|ref|YP_005839547.1| - 2.1e-09 36.9 13.8 4.4e-09 35.9 9.2 1.5 1 1 1 2 2 2 2 Reovirus sigma C capsid protein Myosin_tail_1 PF01576.14 gi|385803147|ref|YP_005839547.1| - 6.8e-09 34.0 30.9 7.8e-08 30.5 21.4 1.9 1 1 0 1 1 1 1 Myosin tail CENP-F_leu_zip PF10473.4 gi|385803147|ref|YP_005839547.1| - 9.8e-09 35.1 30.7 1e-05 25.4 7.5 2.1 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Tropomyosin_1 PF12718.2 gi|385803147|ref|YP_005839547.1| - 1.5e-08 34.6 31.8 6e-05 22.9 1.5 2.1 1 1 1 2 2 2 2 Tropomyosin like TPR_MLP1_2 PF07926.7 gi|385803147|ref|YP_005839547.1| - 5.5e-08 32.6 30.4 2.2e-05 24.2 21.0 2.1 1 1 0 1 1 1 1 TPR/MLP1/MLP2-like protein TMF_DNA_bd PF12329.3 gi|385803147|ref|YP_005839547.1| - 6.9e-08 32.1 16.0 3.9e-05 23.3 3.7 3.4 1 1 3 4 4 4 2 TATA element modulatory factor 1 DNA binding DivIC PF04977.10 gi|385803147|ref|YP_005839547.1| - 1.2e-07 31.1 26.3 0.017 14.5 1.8 4.4 1 1 4 5 5 4 3 Septum formation initiator WEMBL PF05701.6 gi|385803147|ref|YP_005839547.1| - 2.2e-07 29.7 19.8 3.7e-07 29.0 13.7 1.3 1 0 0 1 1 1 1 Weak chloroplast movement under blue light Laminin_I PF06008.9 gi|385803147|ref|YP_005839547.1| - 2.6e-07 30.2 26.0 1.2e-06 28.0 8.8 2.1 1 1 0 2 2 2 1 Laminin Domain I CCDC144C PF14915.1 gi|385803147|ref|YP_005839547.1| - 3.9e-07 29.2 25.9 5.3e-07 28.8 18.0 1.1 1 0 0 1 1 1 1 CCDC144C protein coiled-coil region bZIP_1 PF00170.16 gi|385803147|ref|YP_005839547.1| - 6.2e-07 29.2 22.1 0.012 15.5 0.7 4.3 1 1 1 3 3 3 2 bZIP transcription factor ADIP PF11559.3 gi|385803147|ref|YP_005839547.1| - 7e-07 29.2 31.2 0.00085 19.2 3.5 3.1 1 1 2 3 3 3 3 Afadin- and alpha -actinin-Binding PspA_IM30 PF04012.7 gi|385803147|ref|YP_005839547.1| - 9.1e-07 28.4 23.9 0.0035 16.7 7.8 2.5 1 1 1 2 2 2 2 PspA/IM30 family IncA PF04156.9 gi|385803147|ref|YP_005839547.1| - 1.5e-06 27.9 43.9 0.0006 19.4 4.4 3.0 1 1 2 3 3 2 2 IncA protein Tropomyosin PF00261.15 gi|385803147|ref|YP_005839547.1| - 1.8e-06 27.2 24.5 0.0003 19.9 10.0 2.4 1 1 1 2 2 2 2 Tropomyosin DUF1664 PF07889.7 gi|385803147|ref|YP_005839547.1| - 1.9e-06 27.7 13.0 0.00011 21.9 3.1 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) ERM PF00769.14 gi|385803147|ref|YP_005839547.1| - 2.2e-06 27.4 14.0 2.2e-06 27.4 9.7 2.0 1 1 1 2 2 2 1 Ezrin/radixin/moesin family AAA_13 PF13166.1 gi|385803147|ref|YP_005839547.1| - 4.4e-06 25.4 16.0 5.5e-06 25.1 11.1 1.0 1 0 0 1 1 1 1 AAA domain TBPIP PF07106.8 gi|385803147|ref|YP_005839547.1| - 8.8e-06 25.3 24.1 0.00095 18.7 5.8 2.2 1 1 1 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF972 PF06156.8 gi|385803147|ref|YP_005839547.1| - 8.8e-06 26.0 25.4 0.00046 20.4 0.7 3.1 1 1 2 3 3 3 1 Protein of unknown function (DUF972) Shugoshin_N PF07558.6 gi|385803147|ref|YP_005839547.1| - 1.6e-05 24.4 12.7 0.001 18.7 1.1 4.1 2 1 3 5 5 5 3 Shugoshin N-terminal coiled-coil region DUF4201 PF13870.1 gi|385803147|ref|YP_005839547.1| - 1.8e-05 24.2 18.5 0.0068 15.8 0.6 2.6 1 1 1 2 2 2 2 Domain of unknown function (DUF4201) ATG16 PF08614.6 gi|385803147|ref|YP_005839547.1| - 2.1e-05 24.4 32.1 0.00012 21.9 11.8 2.1 1 1 1 2 2 2 1 Autophagy protein 16 (ATG16) DUF2968 PF11180.3 gi|385803147|ref|YP_005839547.1| - 3.1e-05 23.4 28.3 0.00038 19.9 5.6 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF2968) Filament PF00038.16 gi|385803147|ref|YP_005839547.1| - 3.6e-05 23.4 26.6 0.003 17.0 9.8 2.5 1 1 1 2 2 2 2 Intermediate filament protein FlaC_arch PF05377.6 gi|385803147|ref|YP_005839547.1| - 4e-05 23.4 27.6 0.022 14.6 1.9 5.4 1 1 5 6 6 6 1 Flagella accessory protein C (FlaC) GAS PF13851.1 gi|385803147|ref|YP_005839547.1| - 4.5e-05 22.7 10.6 4.5e-05 22.7 7.3 2.2 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding FliJ PF02050.11 gi|385803147|ref|YP_005839547.1| - 4.8e-05 23.3 23.2 0.0015 18.6 7.4 2.4 1 1 1 2 2 2 2 Flagellar FliJ protein Laminin_II PF06009.7 gi|385803147|ref|YP_005839547.1| - 5.4e-05 22.9 22.6 0.0016 18.2 6.0 2.9 1 1 2 3 3 3 3 Laminin Domain II Spc7 PF08317.6 gi|385803147|ref|YP_005839547.1| - 7.5e-05 21.5 24.0 0.008 14.8 8.5 2.1 1 1 1 2 2 2 2 Spc7 kinetochore protein AAA_27 PF13514.1 gi|385803147|ref|YP_005839547.1| - 0.00012 19.9 18.5 0.00016 19.5 12.8 1.0 1 0 0 1 1 1 1 AAA domain Atg14 PF10186.4 gi|385803147|ref|YP_005839547.1| - 0.00014 20.9 21.9 0.0071 15.3 10.2 2.1 1 1 1 2 2 2 2 UV radiation resistance protein and autophagy-related subunit 14 Cast PF10174.4 gi|385803147|ref|YP_005839547.1| - 0.0002 19.6 28.2 0.0056 14.7 12.6 2.1 1 1 1 2 2 2 2 RIM-binding protein of the cytomatrix active zone HALZ PF02183.13 gi|385803147|ref|YP_005839547.1| - 0.00023 20.8 26.9 0.11 12.2 1.0 4.9 2 2 3 5 5 4 3 Homeobox associated leucine zipper MAD PF05557.8 gi|385803147|ref|YP_005839547.1| - 0.00024 19.3 29.4 0.00025 19.2 5.8 2.1 1 1 1 2 2 2 1 Mitotic checkpoint protein bZIP_2 PF07716.10 gi|385803147|ref|YP_005839547.1| - 0.00026 20.7 34.3 0.017 14.8 0.4 5.6 2 1 3 5 5 4 3 Basic region leucine zipper DUF3584 PF12128.3 gi|385803147|ref|YP_005839547.1| - 0.00028 18.3 23.3 0.00049 17.6 16.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) COG2 PF06148.6 gi|385803147|ref|YP_005839547.1| - 0.00029 20.7 18.6 0.24 11.2 2.7 3.0 1 1 2 3 3 3 2 COG (conserved oligomeric Golgi) complex component, COG2 DUF745 PF05335.8 gi|385803147|ref|YP_005839547.1| - 0.0003 20.3 15.1 0.0003 20.3 10.5 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF745) Seryl_tRNA_N PF02403.17 gi|385803147|ref|YP_005839547.1| - 0.0003 20.7 20.1 0.041 13.8 2.7 2.3 1 1 1 2 2 2 2 Seryl-tRNA synthetase N-terminal domain EzrA PF06160.7 gi|385803147|ref|YP_005839547.1| - 0.00036 18.8 20.9 0.028 12.6 6.5 2.0 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA Baculo_PEP_C PF04513.7 gi|385803147|ref|YP_005839547.1| - 0.00044 20.0 21.6 0.00048 19.9 9.4 2.2 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus BRE1 PF08647.6 gi|385803147|ref|YP_005839547.1| - 0.00046 20.1 20.1 0.0009 19.1 3.4 3.1 1 1 2 3 3 3 1 BRE1 E3 ubiquitin ligase IFT57 PF10498.4 gi|385803147|ref|YP_005839547.1| - 0.00047 19.0 15.6 0.00047 19.0 10.8 2.0 1 1 1 2 2 2 1 Intra-flagellar transport protein 57 Rootletin PF15035.1 gi|385803147|ref|YP_005839547.1| - 0.00052 20.0 32.5 0.072 13.0 4.3 3.5 1 1 2 3 3 3 2 Ciliary rootlet component, centrosome cohesion APG6 PF04111.7 gi|385803147|ref|YP_005839547.1| - 0.00052 19.1 29.1 0.0077 15.3 1.2 2.0 1 1 1 2 2 2 2 Autophagy protein Apg6 Vps52 PF04129.7 gi|385803147|ref|YP_005839547.1| - 0.0007 18.2 5.1 0.0007 18.2 3.6 1.9 1 1 1 2 2 2 1 Vps52 / Sac2 family BLOC1_2 PF10046.4 gi|385803147|ref|YP_005839547.1| - 0.00073 19.6 21.3 0.0077 16.3 4.8 3.4 1 1 2 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF812 PF05667.6 gi|385803147|ref|YP_005839547.1| - 0.00081 18.0 21.9 0.038 12.5 10.2 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF812) Syntaxin-6_N PF09177.6 gi|385803147|ref|YP_005839547.1| - 0.001 19.3 21.9 0.64 10.4 9.9 3.1 1 1 1 2 2 2 1 Syntaxin 6, N-terminal DUF869 PF05911.6 gi|385803147|ref|YP_005839547.1| - 0.0012 17.1 23.3 0.0028 16.0 16.1 1.6 1 1 0 1 1 1 1 Plant protein of unknown function (DUF869) DivIVA PF05103.8 gi|385803147|ref|YP_005839547.1| - 0.0013 18.8 25.4 0.014 15.4 11.8 2.7 1 1 1 2 2 2 1 DivIVA protein DUF948 PF06103.6 gi|385803147|ref|YP_005839547.1| - 0.0014 18.4 13.3 0.079 12.8 0.4 3.5 1 1 2 3 3 3 1 Bacterial protein of unknown function (DUF948) Macoilin PF09726.4 gi|385803147|ref|YP_005839547.1| - 0.0014 17.0 21.5 0.0019 16.6 14.9 1.2 1 0 0 1 1 1 1 Transmembrane protein CCDC155 PF14662.1 gi|385803147|ref|YP_005839547.1| - 0.0015 18.2 34.3 0.0031 17.1 19.1 2.3 1 1 1 2 2 2 1 Coiled-coil region of CCDC155 MscS_porin PF12795.2 gi|385803147|ref|YP_005839547.1| - 0.0015 17.9 40.2 0.0027 17.0 24.7 2.1 1 1 1 2 2 2 1 Mechanosensitive ion channel porin domain NPV_P10 PF05531.7 gi|385803147|ref|YP_005839547.1| - 0.0016 18.6 20.4 0.42 10.8 1.2 3.4 1 1 2 3 3 3 1 Nucleopolyhedrovirus P10 protein Taxilin PF09728.4 gi|385803147|ref|YP_005839547.1| - 0.0017 17.5 19.2 0.0027 16.8 13.3 1.3 1 0 0 1 1 1 1 Myosin-like coiled-coil protein Uds1 PF15456.1 gi|385803147|ref|YP_005839547.1| - 0.0017 18.3 14.1 0.0017 18.3 9.8 2.3 1 1 1 2 2 2 1 Up-regulated During Septation HOOK PF05622.7 gi|385803147|ref|YP_005839547.1| - 0.0018 16.2 27.8 0.023 12.5 4.6 2.0 1 1 1 2 2 2 2 HOOK protein Gp58 PF07902.6 gi|385803147|ref|YP_005839547.1| - 0.002 16.4 12.0 0.0025 16.0 8.3 1.1 1 0 0 1 1 1 1 gp58-like protein Cep57_CLD_2 PF14197.1 gi|385803147|ref|YP_005839547.1| - 0.0026 17.6 4.5 0.0026 17.6 3.1 3.3 1 1 2 3 3 3 1 Centrosome localisation domain of PPC89 Prefoldin_2 PF01920.15 gi|385803147|ref|YP_005839547.1| - 0.003 17.2 25.9 0.18 11.5 0.3 3.9 1 1 3 4 4 4 1 Prefoldin subunit WXG100 PF06013.7 gi|385803147|ref|YP_005839547.1| - 0.0037 17.2 21.4 2.4 8.2 0.9 4.4 1 1 2 3 3 3 0 Proteins of 100 residues with WXG Nup54 PF13874.1 gi|385803147|ref|YP_005839547.1| - 0.0039 16.8 20.9 0.0067 16.0 8.5 2.4 1 1 1 2 2 2 1 Nucleoporin complex subunit 54 DUF2205 PF10224.4 gi|385803147|ref|YP_005839547.1| - 0.0041 16.6 3.0 0.0041 16.6 2.1 3.4 1 1 2 3 3 3 1 Predicted coiled-coil protein (DUF2205) Rab5-bind PF09311.6 gi|385803147|ref|YP_005839547.1| - 0.0042 16.9 35.1 0.19 11.6 17.9 2.7 1 1 1 2 2 2 1 Rabaptin-like protein Fib_alpha PF08702.5 gi|385803147|ref|YP_005839547.1| - 0.0043 17.1 17.8 0.2 11.7 12.3 2.1 1 1 0 1 1 1 1 Fibrinogen alpha/beta chain family CENP-Q PF13094.1 gi|385803147|ref|YP_005839547.1| - 0.0047 16.9 35.2 0.093 12.7 12.1 2.9 1 1 2 3 3 3 1 CENP-Q, a CENPA-CAD centromere complex subunit AIP3 PF03915.8 gi|385803147|ref|YP_005839547.1| - 0.005 15.8 13.4 0.0064 15.4 9.3 1.1 1 0 0 1 1 1 1 Actin interacting protein 3 PEARLI-4 PF05278.7 gi|385803147|ref|YP_005839547.1| - 0.0061 15.9 9.2 0.024 14.0 0.4 2.3 1 1 1 2 2 2 1 Arabidopsis phospholipase-like protein (PEARLI 4) HrpB7 PF09486.5 gi|385803147|ref|YP_005839547.1| - 0.0073 16.2 15.6 0.013 15.4 7.2 3.0 1 1 1 2 2 2 1 Bacterial type III secretion protein (HrpB7) DUF904 PF06005.7 gi|385803147|ref|YP_005839547.1| - 0.008 16.4 38.0 0.041 14.1 1.1 4.2 1 1 2 3 3 2 2 Protein of unknown function (DUF904) COG5 PF10392.4 gi|385803147|ref|YP_005839547.1| - 0.0081 16.1 14.8 0.27 11.1 0.8 3.0 1 1 2 3 3 3 1 Golgi transport complex subunit 5 DUF2730 PF10805.3 gi|385803147|ref|YP_005839547.1| - 0.0094 15.6 13.1 1.1 9.0 2.2 3.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) MCPsignal PF00015.16 gi|385803147|ref|YP_005839547.1| - 0.0096 15.4 13.1 0.0093 15.5 8.2 1.5 1 1 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Herpes_U30 PF04523.8 gi|385803147|ref|YP_005839547.1| - 0.0099 13.3 9.7 0.012 13.1 6.7 1.0 1 0 0 1 1 1 1 Herpes virus tegument protein U30 Mod_r PF07200.8 gi|385803147|ref|YP_005839547.1| - 0.01 15.7 25.5 0.12 12.3 6.6 2.6 1 1 2 3 3 3 0 Modifier of rudimentary (Mod(r)) protein TMF_TATA_bd PF12325.3 gi|385803147|ref|YP_005839547.1| - 0.012 15.3 29.4 0.031 13.9 0.5 3.3 1 1 2 3 3 3 0 TATA element modulatory factor 1 TATA binding Fez1 PF06818.10 gi|385803147|ref|YP_005839547.1| - 0.013 15.5 24.9 0.11 12.5 17.1 2.1 1 1 0 1 1 1 0 Fez1 DUF3450 PF11932.3 gi|385803147|ref|YP_005839547.1| - 0.013 14.7 27.9 0.18 11.0 8.6 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) DUF4200 PF13863.1 gi|385803147|ref|YP_005839547.1| - 0.013 15.4 14.0 0.013 15.4 9.7 3.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4200) Sec8_exocyst PF04048.9 gi|385803147|ref|YP_005839547.1| - 0.015 14.9 14.6 0.027 14.0 8.5 2.3 1 1 1 2 2 1 0 Sec8 exocyst complex component specific domain DUF4094 PF13334.1 gi|385803147|ref|YP_005839547.1| - 0.016 15.5 14.0 0.54 10.6 1.5 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4094) TMPIT PF07851.8 gi|385803147|ref|YP_005839547.1| - 0.016 14.2 15.4 0.2 10.6 5.4 2.0 1 1 1 2 2 2 0 TMPIT-like protein LXG PF04740.7 gi|385803147|ref|YP_005839547.1| - 0.018 14.8 16.8 0.048 13.4 8.0 2.2 1 1 1 2 2 2 0 LXG domain of WXG superfamily DUF4363 PF14276.1 gi|385803147|ref|YP_005839547.1| - 0.018 14.7 5.4 0.099 12.3 0.0 2.8 1 1 0 2 2 2 0 Domain of unknown function (DUF4363) Snapin_Pallidin PF14712.1 gi|385803147|ref|YP_005839547.1| - 0.019 15.2 18.1 1.1 9.5 0.4 3.1 1 1 2 3 3 3 0 Snapin/Pallidin DegS PF05384.6 gi|385803147|ref|YP_005839547.1| - 0.019 14.1 17.3 0.71 9.0 0.4 2.7 1 1 1 2 2 2 0 Sensor protein DegS Prominin PF05478.6 gi|385803147|ref|YP_005839547.1| - 0.021 12.4 18.2 0.33 8.4 12.5 2.0 1 1 1 2 2 2 0 Prominin HsbA PF12296.3 gi|385803147|ref|YP_005839547.1| - 0.022 14.6 5.5 0.043 13.6 2.6 2.1 1 1 0 1 1 1 0 Hydrophobic surface binding protein A Leu_zip PF15294.1 gi|385803147|ref|YP_005839547.1| - 0.027 13.5 25.2 0.34 9.9 10.1 2.8 1 1 0 2 2 2 0 Leucine zipper Exonuc_VII_L PF02601.10 gi|385803147|ref|YP_005839547.1| - 0.028 13.6 14.8 0.042 13.0 10.3 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit Bacillus_HBL PF05791.6 gi|385803147|ref|YP_005839547.1| - 0.028 13.7 16.1 0.35 10.2 1.7 2.2 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) DUF2450 PF10475.4 gi|385803147|ref|YP_005839547.1| - 0.034 13.0 11.5 0.061 12.2 7.9 1.4 1 1 0 1 1 1 0 Protein of unknown function N-terminal domain (DUF2450) DUF724 PF05266.9 gi|385803147|ref|YP_005839547.1| - 0.036 13.6 16.0 0.077 12.6 3.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF724) RTBV_P46 PF06216.6 gi|385803147|ref|YP_005839547.1| - 0.037 12.8 9.5 0.16 10.7 0.6 2.6 1 1 1 3 3 3 0 Rice tungro bacilliform virus P46 protein UPF0242 PF06785.6 gi|385803147|ref|YP_005839547.1| - 0.037 12.7 22.0 0.76 8.3 10.6 2.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) Mnd1 PF03962.10 gi|385803147|ref|YP_005839547.1| - 0.039 13.6 23.8 2.1 7.9 7.8 2.5 1 1 1 2 2 2 0 Mnd1 family CENP-F_N PF10481.4 gi|385803147|ref|YP_005839547.1| - 0.043 13.1 22.4 0.012 14.9 7.8 2.1 1 1 1 2 2 2 0 Cenp-F N-terminal domain Prefoldin PF02996.12 gi|385803147|ref|YP_005839547.1| - 0.043 13.4 22.0 0.17 11.5 2.4 4.0 1 1 2 4 4 4 0 Prefoldin subunit DUF4140 PF13600.1 gi|385803147|ref|YP_005839547.1| - 0.046 14.1 25.8 0.36 11.3 1.8 3.8 1 1 2 3 3 3 0 N-terminal domain of unknown function (DUF4140) HisKA_3 PF07730.8 gi|385803147|ref|YP_005839547.1| - 0.056 13.8 12.1 0.19 12.0 1.4 3.2 1 1 1 3 3 2 0 Histidine kinase Lectin_N PF03954.9 gi|385803147|ref|YP_005839547.1| - 0.056 12.8 16.6 0.69 9.3 6.9 2.6 1 1 1 2 2 2 0 Hepatic lectin, N-terminal domain RmuC PF02646.11 gi|385803147|ref|YP_005839547.1| - 0.067 12.0 17.4 0.54 9.0 4.9 2.7 1 1 1 2 2 2 0 RmuC family ALIX_LYPXL_bnd PF13949.1 gi|385803147|ref|YP_005839547.1| - 0.078 11.9 24.5 0.26 10.1 17.0 1.7 1 1 0 1 1 1 0 ALIX V-shaped domain binding to HIV DUF2681 PF10883.3 gi|385803147|ref|YP_005839547.1| - 0.083 13.1 14.1 0.15 12.3 0.4 3.9 1 1 3 4 4 3 0 Protein of unknown function (DUF2681) Spectrin PF00435.16 gi|385803147|ref|YP_005839547.1| - 0.089 13.0 22.1 1.7 8.9 7.1 2.9 1 1 1 2 2 2 0 Spectrin repeat Perilipin PF03036.11 gi|385803147|ref|YP_005839547.1| - 0.09 11.5 11.6 0.11 11.3 8.0 1.1 1 0 0 1 1 1 0 Perilipin family Spc24 PF08286.6 gi|385803147|ref|YP_005839547.1| - 0.11 12.2 33.0 0.68 9.6 3.6 3.3 1 1 2 3 3 3 0 Spc24 subunit of Ndc80 DUF342 PF03961.8 gi|385803147|ref|YP_005839547.1| - 0.12 10.7 16.9 0.19 10.1 4.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF342) Lebercilin PF15619.1 gi|385803147|ref|YP_005839547.1| - 0.12 11.7 27.8 1.7 8.0 16.0 2.3 1 1 1 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease DUF2353 PF09789.4 gi|385803147|ref|YP_005839547.1| - 0.13 11.5 23.5 0.23 10.6 13.0 2.0 1 1 1 2 2 2 0 Uncharacterized coiled-coil protein (DUF2353) DUF3407 PF11887.3 gi|385803147|ref|YP_005839547.1| - 0.13 11.5 6.2 0.16 11.2 4.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3407) Ax_dynein_light PF10211.4 gi|385803147|ref|YP_005839547.1| - 0.13 12.1 24.0 1.2 8.9 1.0 3.2 1 1 2 3 3 3 0 Axonemal dynein light chain Tetraspannin PF00335.15 gi|385803147|ref|YP_005839547.1| - 0.13 11.4 0.3 0.28 10.4 0.2 1.6 1 1 0 1 1 1 0 Tetraspanin family Microtub_assoc PF07989.6 gi|385803147|ref|YP_005839547.1| - 0.14 12.0 15.4 0.18 11.6 1.4 3.7 1 1 1 3 3 3 0 Microtubule associated Borrelia_P83 PF05262.6 gi|385803147|ref|YP_005839547.1| - 0.15 10.2 15.7 0.18 10.0 10.9 1.0 1 0 0 1 1 1 0 Borrelia P83/100 protein CALCOCO1 PF07888.6 gi|385803147|ref|YP_005839547.1| - 0.16 10.2 24.3 3.4 5.8 16.8 2.0 1 1 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like THOC7 PF05615.8 gi|385803147|ref|YP_005839547.1| - 0.16 12.2 22.2 0.36 11.1 2.8 3.0 1 1 2 3 3 3 0 Tho complex subunit 7 KLRAQ PF10205.4 gi|385803147|ref|YP_005839547.1| - 0.16 11.9 25.7 0.47 10.5 3.6 2.4 1 1 1 2 2 2 0 Predicted coiled-coil domain-containing protein DUF4618 PF15397.1 gi|385803147|ref|YP_005839547.1| - 0.17 11.1 22.4 0.52 9.6 3.3 3.0 1 1 1 3 3 3 0 Domain of unknown function (DUF4618) Fmp27_WPPW PF10359.4 gi|385803147|ref|YP_005839547.1| - 0.17 10.2 21.6 0.061 11.7 3.4 2.0 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain zf-ZPR1 PF03367.8 gi|385803147|ref|YP_005839547.1| - 0.18 10.9 13.6 1.2 8.2 5.8 2.8 1 1 2 3 3 3 0 ZPR1 zinc-finger domain DUF641 PF04859.7 gi|385803147|ref|YP_005839547.1| - 0.18 11.5 16.3 0.81 9.4 4.6 2.8 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) GrpE PF01025.14 gi|385803147|ref|YP_005839547.1| - 0.21 11.1 26.1 0.37 10.3 0.7 3.1 1 1 2 3 3 3 0 GrpE GLE1 PF07817.8 gi|385803147|ref|YP_005839547.1| - 0.22 10.4 8.7 1.4 7.7 0.1 2.2 1 1 1 2 2 2 0 GLE1-like protein V_ATPase_I PF01496.14 gi|385803147|ref|YP_005839547.1| - 0.23 9.2 20.8 6.5 4.4 14.4 2.0 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family FH2 PF02181.18 gi|385803147|ref|YP_005839547.1| - 0.23 10.2 13.6 2.3 6.9 4.6 2.2 1 1 1 2 2 2 0 Formin Homology 2 Domain Med4 PF10018.4 gi|385803147|ref|YP_005839547.1| - 0.24 10.7 20.9 0.14 11.4 1.1 3.0 1 1 2 3 3 3 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF4446 PF14584.1 gi|385803147|ref|YP_005839547.1| - 0.25 11.1 14.0 0.59 9.9 0.3 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) DUF848 PF05852.6 gi|385803147|ref|YP_005839547.1| - 0.25 11.1 23.5 0.46 10.3 8.0 2.2 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) Sec2p PF06428.6 gi|385803147|ref|YP_005839547.1| - 0.26 11.1 26.8 1 9.2 6.5 3.5 1 1 2 3 3 3 0 GDP/GTP exchange factor Sec2p DUF1049 PF06305.6 gi|385803147|ref|YP_005839547.1| - 0.27 10.7 0.0 0.27 10.7 0.0 4.4 2 2 2 5 5 4 0 Protein of unknown function (DUF1049) Halogen_Hydrol PF10112.4 gi|385803147|ref|YP_005839547.1| - 0.33 10.3 4.8 0.63 9.4 0.1 2.2 1 1 1 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Cluap1 PF10234.4 gi|385803147|ref|YP_005839547.1| - 0.37 9.9 21.0 0.48 9.5 3.4 2.2 1 1 1 2 2 2 0 Clusterin-associated protein-1 Hemerythrin PF01814.18 gi|385803147|ref|YP_005839547.1| - 0.38 10.9 6.2 63 3.7 4.3 3.0 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain LMBR1 PF04791.11 gi|385803147|ref|YP_005839547.1| - 0.39 9.2 10.5 0.51 8.8 7.3 1.3 1 1 0 1 1 1 0 LMBR1-like membrane protein Herpes_UL6 PF01763.11 gi|385803147|ref|YP_005839547.1| - 0.45 8.6 18.6 0.2 9.7 5.8 2.1 1 1 1 2 2 2 0 Herpesvirus UL6 like LPP PF04728.8 gi|385803147|ref|YP_005839547.1| - 0.47 10.2 16.1 0.49 10.2 0.8 4.2 1 1 2 3 3 3 0 Lipoprotein leucine-zipper Surfac_D-trimer PF09006.6 gi|385803147|ref|YP_005839547.1| - 0.47 10.2 3.6 6.7 6.5 0.0 3.7 3 2 2 5 5 2 0 Lung surfactant protein D coiled-coil trimerisation Phlebovirus_NSM PF07246.6 gi|385803147|ref|YP_005839547.1| - 0.53 9.3 15.2 2.2 7.3 5.4 2.1 1 1 1 2 2 2 0 Phlebovirus nonstructural protein NS-M Kinetocho_Slk19 PF12709.2 gi|385803147|ref|YP_005839547.1| - 0.54 10.3 24.1 0.81 9.7 2.6 4.6 1 1 2 3 3 1 0 Central kinetochore-associated DUF1640 PF07798.6 gi|385803147|ref|YP_005839547.1| - 0.56 10.2 20.2 11 5.9 9.4 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) Sipho_Gp157 PF05565.6 gi|385803147|ref|YP_005839547.1| - 0.58 9.7 11.3 0.3 10.6 0.3 2.4 1 1 1 2 2 2 0 Siphovirus Gp157 DUF2935 PF11155.3 gi|385803147|ref|YP_005839547.1| - 0.59 10.2 8.6 2.9 7.9 0.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) BicD PF09730.4 gi|385803147|ref|YP_005839547.1| - 0.59 8.4 25.2 2 6.6 14.0 2.0 1 1 1 2 2 2 0 Microtubule-associated protein Bicaudal-D YqgF PF14639.1 gi|385803147|ref|YP_005839547.1| - 0.62 9.6 3.6 1.4 8.4 2.0 1.8 1 1 1 2 2 2 0 Holliday-junction resolvase-like of SPT6 Flagellin_C PF00700.16 gi|385803147|ref|YP_005839547.1| - 0.63 10.2 21.4 1.6 8.9 2.1 4.1 1 1 3 4 4 4 0 Bacterial flagellin C-terminal helical region OmpH PF03938.9 gi|385803147|ref|YP_005839547.1| - 0.65 9.9 27.9 12 5.7 19.4 2.3 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) RasGAP_C PF03836.10 gi|385803147|ref|YP_005839547.1| - 0.65 9.6 14.4 1.5 8.4 2.5 2.8 1 1 2 3 3 3 0 RasGAP C-terminus TSC22 PF01166.13 gi|385803147|ref|YP_005839547.1| - 0.66 9.9 23.3 0.13 12.2 1.6 4.7 1 1 4 5 5 4 0 TSC-22/dip/bun family DUF1515 PF07439.6 gi|385803147|ref|YP_005839547.1| - 0.69 9.7 11.3 1.6 8.5 1.1 3.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) Striatin PF08232.7 gi|385803147|ref|YP_005839547.1| - 0.7 10.2 22.6 0.14 12.4 3.2 2.6 1 1 1 2 2 2 0 Striatin family UPF0449 PF15136.1 gi|385803147|ref|YP_005839547.1| - 0.7 10.1 23.1 0.75 10.0 0.4 4.5 1 1 3 4 4 4 0 Uncharacterised protein family UPF0449 SpecificRecomb PF10136.4 gi|385803147|ref|YP_005839547.1| - 0.76 7.7 4.4 0.9 7.4 3.1 1.1 1 0 0 1 1 1 0 Site-specific recombinase DASH_Dam1 PF08653.5 gi|385803147|ref|YP_005839547.1| - 0.79 9.5 15.3 2.3 8.0 0.4 4.5 1 1 2 4 4 4 0 DASH complex subunit Dam1 DUF2203 PF09969.4 gi|385803147|ref|YP_005839547.1| - 0.89 9.7 11.8 9.5 6.4 5.6 2.6 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) HAP1_N PF04849.8 gi|385803147|ref|YP_005839547.1| - 0.89 8.4 30.2 0.39 9.6 16.1 2.0 1 1 1 2 2 2 0 HAP1 N-terminal conserved region Jnk-SapK_ap_N PF09744.4 gi|385803147|ref|YP_005839547.1| - 0.9 9.5 21.9 2.3 8.1 7.5 2.3 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 Syntaxin PF00804.20 gi|385803147|ref|YP_005839547.1| - 0.98 9.6 22.7 0.55 10.4 0.3 3.0 1 1 1 2 2 2 0 Syntaxin DUF3393 PF11873.3 gi|385803147|ref|YP_005839547.1| - 1 8.8 7.7 2.6 7.4 0.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3393) Golgin_A5 PF09787.4 gi|385803147|ref|YP_005839547.1| - 1.1 7.6 24.7 0.92 7.9 8.9 2.1 1 1 1 2 2 2 0 Golgin subfamily A member 5 YlqD PF11068.3 gi|385803147|ref|YP_005839547.1| - 1.2 9.1 25.3 7 6.7 4.9 3.1 1 1 2 3 3 3 0 YlqD protein DUF4337 PF14235.1 gi|385803147|ref|YP_005839547.1| - 1.3 8.8 14.3 2.5e+02 1.4 9.9 2.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4337) DUF1843 PF08898.5 gi|385803147|ref|YP_005839547.1| - 1.3 9.0 17.1 0.96 9.5 0.1 4.3 1 1 4 5 5 5 0 Domain of unknown function (DUF1843) EAP30 PF04157.11 gi|385803147|ref|YP_005839547.1| - 1.4 8.0 27.4 3.6 6.6 6.1 3.1 1 1 2 3 3 3 0 EAP30/Vps36 family Fzo_mitofusin PF04799.8 gi|385803147|ref|YP_005839547.1| - 1.4 8.2 21.1 3 7.2 5.4 3.0 1 1 2 3 3 3 0 fzo-like conserved region Neur_chan_memb PF02932.11 gi|385803147|ref|YP_005839547.1| - 1.8 8.3 4.3 2.2 8.1 3.0 1.2 1 0 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region Kinesin-relat_1 PF12711.2 gi|385803147|ref|YP_005839547.1| - 1.9 8.9 21.7 0.1 13.0 4.2 3.5 1 1 2 3 3 1 0 Kinesin motor Med9 PF07544.8 gi|385803147|ref|YP_005839547.1| - 2 8.1 16.1 7.3 6.3 2.5 3.3 1 1 2 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 HlyD PF00529.15 gi|385803147|ref|YP_005839547.1| - 2.1 7.5 30.4 2.5 7.3 16.3 2.0 1 1 1 2 2 2 0 HlyD family secretion protein zf-C4H2 PF10146.4 gi|385803147|ref|YP_005839547.1| - 2.2 8.2 13.8 1.7 8.6 7.2 1.8 1 1 1 2 2 2 0 Zinc finger-containing protein DUF1875 PF08961.5 gi|385803147|ref|YP_005839547.1| - 2.5 7.3 12.3 0.3 10.3 0.4 3.0 1 1 1 3 3 3 0 Domain of unknown function (DUF1875) KxDL PF10241.4 gi|385803147|ref|YP_005839547.1| - 2.6 8.0 16.1 1.1 9.1 0.3 3.6 1 1 2 4 4 4 0 Uncharacterized conserved protein Peptidase_S64 PF08192.6 gi|385803147|ref|YP_005839547.1| - 2.6 6.2 10.6 3.1 6.0 7.3 1.0 1 0 0 1 1 1 0 Peptidase family S64 Bap31 PF05529.7 gi|385803147|ref|YP_005839547.1| - 2.9 7.2 19.1 13 5.2 4.5 2.8 1 1 1 2 2 2 0 B-cell receptor-associated protein 31-like ATP-synt_B PF00430.13 gi|385803147|ref|YP_005839547.1| - 3.4 7.4 20.9 7 6.4 13.2 2.3 1 1 2 3 3 2 0 ATP synthase B/B' CF(0) CorA PF01544.13 gi|385803147|ref|YP_005839547.1| - 3.4 6.6 21.7 1.5 7.7 10.2 2.1 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein COX16 PF14138.1 gi|385803147|ref|YP_005839547.1| - 3.4 7.8 9.4 6.3 7.0 0.2 2.8 1 1 2 3 3 2 0 Cytochrome c oxidase assembly protein COX16 DUF3847 PF12958.2 gi|385803147|ref|YP_005839547.1| - 3.5 7.4 20.7 7.8 6.3 0.2 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF3847) DUF3186 PF11382.3 gi|385803147|ref|YP_005839547.1| - 3.5 6.6 26.8 0.34 10.0 2.1 4.0 1 1 3 4 4 4 0 Protein of unknown function (DUF3186) DUF4398 PF14346.1 gi|385803147|ref|YP_005839547.1| - 3.6 7.6 15.8 35 4.5 10.9 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4398) CCDC-167 PF15188.1 gi|385803147|ref|YP_005839547.1| - 3.6 7.5 20.2 0.65 9.9 1.7 3.3 1 1 2 3 3 3 0 Coiled-coil domain-containing protein 167 AATF-Che1 PF13339.1 gi|385803147|ref|YP_005839547.1| - 3.9 7.6 18.4 6.3 6.9 1.7 2.2 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor Pox_A_type_inc PF04508.7 gi|385803147|ref|YP_005839547.1| - 3.9 7.4 15.1 2.6 8.0 0.5 5.0 3 2 2 5 5 4 0 Viral A-type inclusion protein repeat TATR PF03430.8 gi|385803147|ref|YP_005839547.1| - 4.2 5.8 8.5 4.8 5.7 5.9 1.0 1 0 0 1 1 1 0 Trans-activating transcriptional regulator CENP-H PF05837.7 gi|385803147|ref|YP_005839547.1| - 4.4 7.5 23.4 0.26 11.4 2.0 3.1 1 1 2 3 3 3 0 Centromere protein H (CENP-H) DMPK_coil PF08826.5 gi|385803147|ref|YP_005839547.1| - 4.5 7.2 31.6 2.6 8.0 5.3 5.0 2 1 3 5 5 5 0 DMPK coiled coil domain like DUF4559 PF15112.1 gi|385803147|ref|YP_005839547.1| - 4.5 6.3 17.9 18 4.3 12.3 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4559) TMCO5 PF14992.1 gi|385803147|ref|YP_005839547.1| - 4.6 6.3 27.0 0.18 10.8 3.4 2.0 1 1 1 2 2 2 0 TMCO5 family PEP-utilisers_N PF05524.8 gi|385803147|ref|YP_005839547.1| - 4.7 7.0 14.6 8.1 6.2 3.4 3.0 1 1 1 2 2 2 0 PEP-utilising enzyme, N-terminal YPEB PF14620.1 gi|385803147|ref|YP_005839547.1| - 5 6.0 18.0 3.6 6.5 4.6 2.0 1 1 1 2 2 2 0 YpeB sporulation CENP-K PF11802.3 gi|385803147|ref|YP_005839547.1| - 5.1 6.2 14.1 1.8 7.7 6.8 1.9 1 1 1 2 2 2 0 Centromere-associated protein K ATP-synt_DE PF00401.15 gi|385803147|ref|YP_005839547.1| - 5.8 6.8 11.5 1.3e+02 2.5 0.5 2.9 1 1 1 2 2 2 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DASH_Duo1 PF08651.5 gi|385803147|ref|YP_005839547.1| - 5.9 6.5 17.7 0.2 11.2 1.1 3.7 3 1 1 4 4 3 0 DASH complex subunit Duo1 HAUS-augmin3 PF14932.1 gi|385803147|ref|YP_005839547.1| - 6.7 5.8 25.8 4.3 6.4 15.4 1.9 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 FliD_N PF02465.13 gi|385803147|ref|YP_005839547.1| - 7.2 7.0 16.4 1e+02 3.3 4.6 2.9 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus YscO PF07321.7 gi|385803147|ref|YP_005839547.1| - 7.4 6.3 28.5 26 4.6 9.8 3.0 1 1 1 2 2 2 0 Type III secretion protein YscO Erp_C PF06780.6 gi|385803147|ref|YP_005839547.1| - 7.8 6.3 16.3 1.3 8.8 0.9 2.6 1 1 0 2 2 2 0 Erp protein C-terminus bZIP_Maf PF03131.12 gi|385803147|ref|YP_005839547.1| - 7.9 6.8 28.9 3.1 8.1 0.4 4.1 1 1 3 4 4 4 0 bZIP Maf transcription factor End3 PF12761.2 gi|385803147|ref|YP_005839547.1| - 8.4 5.9 25.4 0.75 9.4 3.0 2.8 1 1 1 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 DHHW PF14286.1 gi|385803147|ref|YP_005839547.1| - 8.4 5.5 7.3 10 5.3 5.1 1.2 1 0 0 1 1 1 0 DHHW protein FtsL PF04999.8 gi|385803147|ref|YP_005839547.1| - 8.6 6.1 16.8 60 3.4 0.2 4.3 1 1 2 3 3 2 0 Cell division protein FtsL VWA_2 PF13519.1 gi|385803148|ref|YP_005839548.1| - 2.7e-31 108.9 6.3 5.1e-27 95.0 0.3 3.4 3 0 0 3 3 3 2 von Willebrand factor type A domain VWA PF00092.23 gi|385803148|ref|YP_005839548.1| - 6.7e-18 65.0 0.6 2.7e-16 59.8 0.0 2.3 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|385803148|ref|YP_005839548.1| - 5.3e-16 58.6 0.4 9.4e-15 54.6 0.1 2.5 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|385803148|ref|YP_005839548.1| - 9.2e-10 38.0 0.1 3.5e-08 32.8 0.0 2.4 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein DUF1355 PF07090.6 gi|385803148|ref|YP_005839548.1| - 4.5e-06 26.1 0.1 9.8e-06 25.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1355) BatA PF07584.6 gi|385803148|ref|YP_005839548.1| - 8.2 6.7 6.4 5.9 7.1 0.7 2.7 2 1 1 3 3 3 0 Aerotolerance regulator N-terminal BatA PF07584.6 gi|385803149|ref|YP_005839549.1| - 3.2e-16 59.2 3.3 5.6e-16 58.5 2.3 1.4 1 0 0 1 1 1 1 Aerotolerance regulator N-terminal VWA_2 PF13519.1 gi|385803149|ref|YP_005839549.1| - 3.6e-05 23.9 3.9 7.5e-05 22.8 2.7 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain HAD_2 PF13419.1 gi|385803150|ref|YP_005839550.1| - 5e-24 85.4 0.2 5.9e-24 85.2 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|385803150|ref|YP_005839550.1| - 0.00041 20.8 0.0 0.001 19.5 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|385803150|ref|YP_005839550.1| - 0.0014 18.8 0.0 0.0016 18.6 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|385803150|ref|YP_005839550.1| - 0.063 13.1 0.0 0.35 10.7 0.0 2.1 2 1 1 3 3 3 0 Haloacid dehalogenase-like hydrolase MTHFR PF02219.12 gi|385803151|ref|YP_005839551.1| - 1.9e-14 53.4 0.0 3.8e-14 52.4 0.0 1.5 1 1 0 1 1 1 1 Methylenetetrahydrofolate reductase G_glu_transpept PF01019.16 gi|385803151|ref|YP_005839551.1| - 0.05 12.0 0.0 0.071 11.5 0.0 1.1 1 0 0 1 1 1 0 Gamma-glutamyltranspeptidase AstE_AspA PF04952.9 gi|385803153|ref|YP_005839553.1| - 4.1e-37 127.6 0.0 5.4e-37 127.2 0.0 1.2 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.19 gi|385803153|ref|YP_005839553.1| - 1.7e-05 24.5 0.5 4.2e-05 23.3 0.3 1.6 1 1 0 1 1 1 1 Zinc carboxypeptidase Creatininase PF02633.9 gi|385803154|ref|YP_005839554.1| - 3.3e-70 235.8 2.1 3.8e-70 235.6 1.5 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Glyco_trans_4_4 PF13579.1 gi|385803154|ref|YP_005839554.1| - 0.013 15.6 0.4 0.018 15.1 0.3 1.2 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain DAO PF01266.19 gi|385803155|ref|YP_005839555.1| - 1.6e-65 221.3 0.2 2.9e-65 220.5 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase GCV_T PF01571.16 gi|385803155|ref|YP_005839555.1| - 2.2e-62 210.1 0.0 4.3e-62 209.2 0.0 1.5 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|385803155|ref|YP_005839555.1| - 5.8e-13 48.6 0.0 1.6e-12 47.2 0.0 1.8 2 0 0 2 2 1 1 Glycine cleavage T-protein C-terminal barrel domain SoxG PF04268.7 gi|385803155|ref|YP_005839555.1| - 1.6e-07 31.2 0.0 7.7e-07 29.0 0.0 2.0 1 1 1 2 2 2 1 Sarcosine oxidase, gamma subunit family Pyr_redox_3 PF13738.1 gi|385803155|ref|YP_005839555.1| - 1.1e-06 28.9 0.5 7.4e-05 22.9 0.3 2.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|385803155|ref|YP_005839555.1| - 1.4e-05 24.1 0.1 3.1e-05 23.0 0.1 1.6 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|385803155|ref|YP_005839555.1| - 2.3e-05 24.3 0.0 9e-05 22.4 0.0 2.1 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|385803155|ref|YP_005839555.1| - 0.00031 21.0 0.3 0.0029 17.9 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|385803155|ref|YP_005839555.1| - 0.0033 17.2 0.4 0.22 11.2 0.0 2.9 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox_2 PF07992.9 gi|385803155|ref|YP_005839555.1| - 0.0049 16.7 0.1 0.078 12.8 0.0 2.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|385803155|ref|YP_005839555.1| - 0.0088 15.8 0.2 0.022 14.6 0.1 1.6 1 0 0 1 1 1 1 ThiF family ApbA PF02558.11 gi|385803155|ref|YP_005839555.1| - 0.015 14.7 0.1 0.03 13.7 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.13 gi|385803155|ref|YP_005839555.1| - 0.026 14.5 0.1 0.069 13.1 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain HI0933_like PF03486.9 gi|385803155|ref|YP_005839555.1| - 0.029 12.8 0.5 0.13 10.7 0.0 1.9 2 0 0 2 2 2 0 HI0933-like protein GMC_oxred_N PF00732.14 gi|385803155|ref|YP_005839555.1| - 0.086 11.9 0.0 0.18 10.9 0.0 1.5 1 0 0 1 1 1 0 GMC oxidoreductase DUF22 PF01629.11 gi|385803155|ref|YP_005839555.1| - 0.09 12.2 0.3 0.17 11.4 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF22 Lycopene_cycl PF05834.7 gi|385803155|ref|YP_005839555.1| - 0.1 11.4 0.4 0.27 10.1 0.0 1.8 2 0 0 2 2 2 0 Lycopene cyclase protein GCV_T PF01571.16 gi|385803156|ref|YP_005839556.1| - 2.8e-60 203.3 0.0 6.4e-60 202.1 0.0 1.7 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain DAO PF01266.19 gi|385803156|ref|YP_005839556.1| - 1.6e-56 191.7 0.4 2.5e-56 191.1 0.3 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase GCV_T_C PF08669.6 gi|385803156|ref|YP_005839556.1| - 3.1e-15 55.9 0.0 1.1e-14 54.1 0.0 2.0 2 0 0 2 2 2 1 Glycine cleavage T-protein C-terminal barrel domain Pyr_redox_3 PF13738.1 gi|385803156|ref|YP_005839556.1| - 2.5e-07 30.9 0.1 3.1e-06 27.4 0.1 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|385803156|ref|YP_005839556.1| - 9.8e-07 27.9 0.6 1.6e-05 23.9 0.4 2.4 1 1 0 1 1 1 1 FAD binding domain SoxG PF04268.7 gi|385803156|ref|YP_005839556.1| - 1.7e-06 27.9 0.0 4.4e-05 23.3 0.0 2.4 2 0 0 2 2 2 1 Sarcosine oxidase, gamma subunit family NAD_binding_8 PF13450.1 gi|385803156|ref|YP_005839556.1| - 6.6e-06 26.0 0.0 2.3e-05 24.2 0.0 2.0 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain ThiF PF00899.16 gi|385803156|ref|YP_005839556.1| - 4.4e-05 23.3 0.3 8.5e-05 22.3 0.0 1.6 2 0 0 2 2 1 1 ThiF family Pyr_redox_2 PF07992.9 gi|385803156|ref|YP_005839556.1| - 4.4e-05 23.4 0.1 0.0013 18.6 0.1 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|385803156|ref|YP_005839556.1| - 0.00012 21.5 0.0 0.00024 20.5 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_9 PF13454.1 gi|385803156|ref|YP_005839556.1| - 0.00013 21.7 0.3 0.15 11.8 0.0 2.8 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|385803156|ref|YP_005839556.1| - 0.00015 22.1 0.6 0.00045 20.5 0.1 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|385803156|ref|YP_005839556.1| - 0.00036 20.6 0.0 0.0012 19.0 0.0 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase HI0933_like PF03486.9 gi|385803156|ref|YP_005839556.1| - 0.0037 15.8 0.1 1 7.7 0.0 2.3 2 0 0 2 2 2 2 HI0933-like protein GMC_oxred_N PF00732.14 gi|385803156|ref|YP_005839556.1| - 0.012 14.8 0.0 0.023 13.8 0.0 1.4 1 0 0 1 1 1 0 GMC oxidoreductase TrkA_N PF02254.13 gi|385803156|ref|YP_005839556.1| - 0.028 14.4 0.1 0.056 13.4 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain Lycopene_cycl PF05834.7 gi|385803156|ref|YP_005839556.1| - 0.074 11.9 0.2 0.12 11.2 0.2 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_7 PF13241.1 gi|385803156|ref|YP_005839556.1| - 0.15 12.3 0.0 0.32 11.2 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding PALP PF00291.20 gi|385803157|ref|YP_005839557.1| - 3.7e-77 259.5 6.5 4.7e-77 259.2 4.5 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.20 gi|385803157|ref|YP_005839557.1| - 1e-07 31.2 0.6 4e-07 29.3 0.4 2.0 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|385803157|ref|YP_005839557.1| - 1e-06 28.9 2.1 3.6e-06 27.2 0.1 2.6 3 0 0 3 3 3 1 ACT domain Usp PF00582.21 gi|385803158|ref|YP_005839558.1| - 3.1e-26 92.2 0.6 3.5e-26 92.0 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family Form_Nir_trans PF01226.12 gi|385803159|ref|YP_005839559.1| - 0.013 14.3 1.5 0.013 14.3 1.0 1.0 1 0 0 1 1 1 0 Formate/nitrite transporter DUF1097 PF06496.6 gi|385803159|ref|YP_005839559.1| - 0.044 13.5 4.1 0.047 13.5 2.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1097) DUF2721 PF11026.3 gi|385803159|ref|YP_005839559.1| - 0.15 11.6 7.1 0.33 10.6 4.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2721) DUF4418 PF14387.1 gi|385803159|ref|YP_005839559.1| - 1.5 8.5 4.6 1.7 8.3 3.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) IncA PF04156.9 gi|385803159|ref|YP_005839559.1| - 1.9 8.0 5.9 1.8 8.0 4.1 1.1 1 0 0 1 1 1 0 IncA protein DUF4064 PF13273.1 gi|385803159|ref|YP_005839559.1| - 2.6 8.1 9.1 3.1 7.9 6.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) BCCT PF02028.12 gi|385803160|ref|YP_005839560.1| - 1.8e-180 600.3 50.8 2.1e-180 600.1 35.2 1.0 1 0 0 1 1 1 1 BCCT family transporter Tnp_DNA_bind PF14706.1 gi|385803161|ref|YP_005839561.1| - 2.6e-26 91.0 0.0 4.6e-26 90.2 0.0 1.4 1 0 0 1 1 1 1 Transposase DNA-binding DDE_Tnp_1 PF01609.16 gi|385803161|ref|YP_005839561.1| - 2.9e-05 23.7 0.2 5.7e-05 22.7 0.2 1.5 1 1 0 1 1 1 1 Transposase DDE domain Dimer_Tnp_Tn5 PF02281.11 gi|385803161|ref|YP_005839561.1| - 0.064 13.3 0.1 0.16 12.0 0.0 1.7 2 0 0 2 2 2 0 Transposase Tn5 dimerisation domain DUF2155 PF09923.4 gi|385803161|ref|YP_005839561.1| - 0.13 12.3 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2155) Pterin_bind PF00809.17 gi|385803163|ref|YP_005839563.1| - 7.3e-71 237.8 0.1 2.1e-70 236.3 0.1 1.9 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.7 gi|385803163|ref|YP_005839563.1| - 2.1e-13 50.7 0.1 4.9e-13 49.5 0.1 1.7 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|385803163|ref|YP_005839563.1| - 1.3e-06 28.3 0.0 9.6e-06 25.5 0.0 2.5 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain FTHFS PF01268.14 gi|385803164|ref|YP_005839564.1| - 1.5e-243 808.9 0.0 1.6e-243 808.7 0.0 1.0 1 0 0 1 1 1 1 Formate--tetrahydrofolate ligase Ribonuc_L-PSP PF01042.16 gi|385803165|ref|YP_005839565.1| - 1.2e-36 125.1 0.1 1.4e-36 124.9 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.1 gi|385803165|ref|YP_005839565.1| - 0.0042 17.0 0.0 0.0057 16.5 0.0 1.3 1 0 0 1 1 1 1 YjgF/chorismate_mutase-like, putative endoribonuclease Gas_vesicle PF00741.13 gi|385803166|ref|YP_005839566.1| - 1.8e-13 50.1 5.7 2.1e-13 49.9 4.0 1.1 1 0 0 1 1 1 1 Gas vesicle protein DUF70 PF01901.11 gi|385803166|ref|YP_005839566.1| - 0.045 12.7 0.0 0.045 12.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function DUF70 GvpL_GvpF PF06386.6 gi|385803167|ref|YP_005839567.1| - 2.8e-87 292.4 0.0 4e-87 291.9 0.0 1.2 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpL/GvpF GvpK PF05121.7 gi|385803168|ref|YP_005839568.1| - 2.9e-28 97.5 6.2 4e-28 97.0 4.3 1.1 1 0 0 1 1 1 1 Gas vesicle protein K DUF948 PF06103.6 gi|385803168|ref|YP_005839568.1| - 0.0019 18.0 0.2 0.0032 17.2 0.2 1.4 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF948) DUF3829 PF12889.2 gi|385803168|ref|YP_005839568.1| - 0.0057 15.8 0.7 0.0063 15.7 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3829) DUF327 PF03885.8 gi|385803168|ref|YP_005839568.1| - 0.0059 16.4 0.5 0.0073 16.1 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF327) End3 PF12761.2 gi|385803168|ref|YP_005839568.1| - 0.013 15.1 1.3 0.017 14.8 0.9 1.1 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 DUF3573 PF12097.3 gi|385803168|ref|YP_005839568.1| - 0.014 14.0 0.4 0.016 13.8 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) Jnk-SapK_ap_N PF09744.4 gi|385803168|ref|YP_005839568.1| - 0.018 15.0 2.2 0.02 14.8 1.5 1.1 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 Syntaxin PF00804.20 gi|385803168|ref|YP_005839568.1| - 0.036 14.2 1.0 0.052 13.7 0.7 1.4 1 0 0 1 1 1 0 Syntaxin CorA PF01544.13 gi|385803168|ref|YP_005839568.1| - 0.056 12.4 1.3 0.075 12.0 0.9 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Uds1 PF15456.1 gi|385803168|ref|YP_005839568.1| - 0.064 13.2 1.8 0.085 12.8 1.2 1.2 1 0 0 1 1 1 0 Up-regulated During Septation FH2 PF02181.18 gi|385803168|ref|YP_005839568.1| - 0.074 11.9 0.7 0.083 11.7 0.5 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain DUF2730 PF10805.3 gi|385803168|ref|YP_005839568.1| - 0.083 12.6 0.2 0.13 12.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) FlxA PF14282.1 gi|385803168|ref|YP_005839568.1| - 0.091 12.7 1.9 0.15 12.0 1.3 1.5 1 1 0 1 1 1 0 FlxA-like protein TPD52 PF04201.10 gi|385803168|ref|YP_005839568.1| - 0.18 11.5 3.1 0.26 10.9 2.2 1.4 1 1 0 1 1 1 0 Tumour protein D52 family Spc24 PF08286.6 gi|385803168|ref|YP_005839568.1| - 1 9.0 4.6 1.6 8.4 3.1 1.6 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 Gas_vesicle PF00741.13 gi|385803169|ref|YP_005839569.1| - 1e-15 57.3 3.5 1.4e-15 56.8 2.4 1.2 1 0 0 1 1 1 1 Gas vesicle protein DUF883 PF05957.8 gi|385803170|ref|YP_005839570.1| - 0.0073 16.6 6.7 0.0073 16.6 4.6 1.6 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF883) MCPVI PF02993.9 gi|385803170|ref|YP_005839570.1| - 0.21 11.7 4.6 0.22 11.6 3.2 1.0 1 0 0 1 1 1 0 Minor capsid protein VI DUF1168 PF06658.7 gi|385803170|ref|YP_005839570.1| - 0.74 9.3 15.7 1 8.9 10.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1168) Borrelia_P83 PF05262.6 gi|385803170|ref|YP_005839570.1| - 0.94 7.6 7.9 0.99 7.5 5.5 1.1 1 0 0 1 1 1 0 Borrelia P83/100 protein SDH_alpha PF03313.10 gi|385803170|ref|YP_005839570.1| - 1.1 8.2 3.4 1.2 8.1 2.4 1.0 1 0 0 1 1 1 0 Serine dehydratase alpha chain Mnd1 PF03962.10 gi|385803170|ref|YP_005839570.1| - 1.3 8.6 7.5 1.6 8.3 5.2 1.2 1 0 0 1 1 1 0 Mnd1 family RF-1 PF00472.15 gi|385803170|ref|YP_005839570.1| - 1.4 8.7 12.0 2 8.2 8.2 1.4 1 1 0 1 1 1 0 RF-1 domain DUF4407 PF14362.1 gi|385803170|ref|YP_005839570.1| - 1.4 7.8 6.7 1.4 7.8 4.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) BBS2_C PF14782.1 gi|385803170|ref|YP_005839570.1| - 1.4 7.3 6.1 1.6 7.2 4.2 1.1 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 2, C-terminal Host_attach PF10116.4 gi|385803170|ref|YP_005839570.1| - 1.9 8.6 7.5 2.7 8.2 5.2 1.3 1 0 0 1 1 1 0 Protein required for attachment to host cells ELL PF10390.4 gi|385803170|ref|YP_005839570.1| - 2 7.5 11.6 2.4 7.3 8.0 1.0 1 0 0 1 1 1 0 RNA polymerase II elongation factor ELL SAPS PF04499.10 gi|385803170|ref|YP_005839570.1| - 4 5.9 7.1 4.2 5.8 4.9 1.0 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein FAM60A PF15396.1 gi|385803170|ref|YP_005839570.1| - 4 7.1 8.6 4.5 6.9 6.0 1.1 1 0 0 1 1 1 0 Protein Family FAM60A GvpH PF05455.6 gi|385803171|ref|YP_005839571.1| - 8.7e-20 71.0 7.0 4.6e-19 68.7 3.0 2.3 1 1 1 2 2 2 2 GvpH GvpG PF05120.7 gi|385803172|ref|YP_005839572.1| - 0.0038 16.9 4.3 0.0046 16.7 3.0 1.1 1 0 0 1 1 1 1 Gas vesicle protein G Orthopox_A49R PF06489.6 gi|385803172|ref|YP_005839572.1| - 0.12 12.3 0.0 0.12 12.3 0.0 1.1 1 0 0 1 1 1 0 Orthopoxvirus A49R protein GvpL_GvpF PF06386.6 gi|385803173|ref|YP_005839573.1| - 6.2e-54 183.2 0.1 7.5e-30 104.3 0.0 2.0 1 1 1 2 2 2 2 Gas vesicle synthesis protein GvpL/GvpF TarH PF02203.10 gi|385803173|ref|YP_005839573.1| - 0.11 12.3 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Tar ligand binding domain homologue DUF2375 PF09558.5 gi|385803173|ref|YP_005839573.1| - 0.13 12.1 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2375) CbiA PF01656.18 gi|385803174|ref|YP_005839574.1| - 6.9e-28 97.3 0.0 9.4e-28 96.9 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|385803174|ref|YP_005839574.1| - 1.8e-12 47.4 0.0 5.5e-07 29.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain MipZ PF09140.6 gi|385803174|ref|YP_005839574.1| - 5.4e-10 38.7 0.8 9.1e-09 34.7 0.1 2.3 1 1 0 2 2 2 1 ATPase MipZ Fer4_NifH PF00142.13 gi|385803174|ref|YP_005839574.1| - 1.5e-07 30.8 0.1 2e-06 27.1 0.0 2.0 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|385803174|ref|YP_005839574.1| - 5e-05 22.4 0.8 0.00012 21.2 0.3 1.8 2 1 0 2 2 2 1 Anion-transporting ATPase YhjQ PF06564.7 gi|385803174|ref|YP_005839574.1| - 0.001 18.5 0.3 0.97 8.7 0.0 2.1 2 0 0 2 2 2 2 YhjQ protein VirC1 PF07015.6 gi|385803174|ref|YP_005839574.1| - 0.0016 17.5 0.3 0.012 14.7 0.0 2.2 2 0 0 2 2 2 1 VirC1 protein AAA_25 PF13481.1 gi|385803174|ref|YP_005839574.1| - 0.018 14.4 0.0 0.03 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|385803174|ref|YP_005839574.1| - 0.039 13.6 0.3 0.094 12.4 0.2 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_17 PF13207.1 gi|385803174|ref|YP_005839574.1| - 0.14 12.9 0.2 0.39 11.5 0.1 2.1 1 1 0 1 1 1 0 AAA domain GvpO PF05800.6 gi|385803177|ref|YP_005839577.1| - 1.6e-35 121.0 2.3 2.3e-35 120.5 1.6 1.2 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpO DUF2072 PF09845.4 gi|385803177|ref|YP_005839577.1| - 0.31 10.9 5.6 0.88 9.4 2.0 2.2 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) AAA_5 PF07728.9 gi|385803178|ref|YP_005839578.1| - 5.7e-18 64.9 0.0 5.7e-17 61.7 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|385803178|ref|YP_005839578.1| - 6.3e-06 26.4 0.0 1.7e-05 25.0 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|385803178|ref|YP_005839578.1| - 0.00017 21.7 0.0 0.00045 20.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.1 gi|385803178|ref|YP_005839578.1| - 0.00019 21.4 0.0 0.00065 19.7 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_3 PF07726.6 gi|385803178|ref|YP_005839578.1| - 0.00028 20.4 0.0 0.014 14.9 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|385803178|ref|YP_005839578.1| - 0.00051 19.5 0.0 0.0061 16.0 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain IstB_IS21 PF01695.12 gi|385803178|ref|YP_005839578.1| - 0.0012 18.3 0.0 0.0023 17.3 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Arch_ATPase PF01637.13 gi|385803178|ref|YP_005839578.1| - 0.0014 18.4 0.0 0.0044 16.7 0.0 1.8 2 0 0 2 2 2 1 Archaeal ATPase AAA_17 PF13207.1 gi|385803178|ref|YP_005839578.1| - 0.0014 19.4 0.0 0.004 17.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain DNA_pol3_beta PF00712.14 gi|385803178|ref|YP_005839578.1| - 0.002 18.0 0.2 0.011 15.6 0.0 2.2 3 0 0 3 3 2 1 DNA polymerase III beta subunit, N-terminal domain AAA_14 PF13173.1 gi|385803178|ref|YP_005839578.1| - 0.0025 17.6 0.0 0.0056 16.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|385803178|ref|YP_005839578.1| - 0.0035 17.2 0.0 0.0095 15.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain IPT PF01745.11 gi|385803178|ref|YP_005839578.1| - 0.0049 16.0 0.0 0.0089 15.2 0.0 1.4 1 0 0 1 1 1 1 Isopentenyl transferase ABC_tran PF00005.22 gi|385803178|ref|YP_005839578.1| - 0.0093 16.2 0.0 0.03 14.6 0.0 2.0 2 0 0 2 2 2 1 ABC transporter AAA_16 PF13191.1 gi|385803178|ref|YP_005839578.1| - 0.0096 15.9 0.0 0.024 14.6 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain KaiC PF06745.8 gi|385803178|ref|YP_005839578.1| - 0.013 14.5 0.1 1.7 7.7 0.0 2.4 2 0 0 2 2 2 0 KaiC NACHT PF05729.7 gi|385803178|ref|YP_005839578.1| - 0.015 14.9 0.0 0.039 13.5 0.0 1.7 2 0 0 2 2 1 0 NACHT domain ATP-synt_ab PF00006.20 gi|385803178|ref|YP_005839578.1| - 0.016 14.6 0.0 0.023 14.1 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_18 PF13238.1 gi|385803178|ref|YP_005839578.1| - 0.02 15.1 0.0 0.02 15.1 0.0 2.0 2 0 0 2 2 1 0 AAA domain PhoH PF02562.11 gi|385803178|ref|YP_005839578.1| - 0.023 13.9 0.0 0.045 12.9 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_28 PF13521.1 gi|385803178|ref|YP_005839578.1| - 0.033 14.1 0.0 0.12 12.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.7 gi|385803178|ref|YP_005839578.1| - 0.034 13.2 0.0 0.27 10.2 0.0 2.3 2 1 1 3 3 3 0 Holliday junction DNA helicase ruvB N-terminus AAA_25 PF13481.1 gi|385803178|ref|YP_005839578.1| - 0.056 12.8 0.0 0.14 11.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|385803178|ref|YP_005839578.1| - 0.078 12.7 0.0 0.23 11.2 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain ResIII PF04851.10 gi|385803178|ref|YP_005839578.1| - 0.098 12.4 0.0 0.23 11.2 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_7 PF12775.2 gi|385803178|ref|YP_005839578.1| - 0.14 11.2 0.0 0.21 10.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region D3 RNA_helicase PF00910.17 gi|385803178|ref|YP_005839578.1| - 0.14 12.2 0.0 0.33 11.1 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Halo_GVPC PF05465.8 gi|385803179|ref|YP_005839579.1| - 5.2e-42 140.9 95.3 9.9e-11 41.2 3.0 8.3 8 0 0 8 8 8 6 Halobacterial gas vesicle protein C (GVPC) repeat ROS_MUCR PF05443.6 gi|385803179|ref|YP_005839579.1| - 1.8e-05 24.5 1.2 0.00015 21.5 0.0 2.8 1 1 2 3 3 3 1 ROS/MUCR transcriptional regulator protein TPR_MLP1_2 PF07926.7 gi|385803179|ref|YP_005839579.1| - 0.00015 21.5 0.3 0.0082 15.8 0.0 3.0 1 1 1 2 2 2 1 TPR/MLP1/MLP2-like protein LOH1CR12 PF10158.4 gi|385803179|ref|YP_005839579.1| - 0.0011 18.7 2.6 0.87 9.3 0.1 4.0 1 1 2 4 4 4 1 Tumour suppressor protein DUF1664 PF07889.7 gi|385803179|ref|YP_005839579.1| - 0.0012 18.5 1.2 0.33 10.7 0.0 3.4 1 1 3 4 4 4 1 Protein of unknown function (DUF1664) IncA PF04156.9 gi|385803179|ref|YP_005839579.1| - 0.0048 16.5 2.1 1.6 8.2 0.9 3.0 1 1 1 2 2 2 2 IncA protein DHC_N1 PF08385.7 gi|385803179|ref|YP_005839579.1| - 0.013 13.9 6.0 0.0076 14.6 2.3 1.6 1 1 1 2 2 2 0 Dynein heavy chain, N-terminal region 1 Baculo_PEP_C PF04513.7 gi|385803179|ref|YP_005839579.1| - 0.014 15.2 0.7 0.68 9.7 0.7 2.8 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Phage_GP20 PF06810.6 gi|385803179|ref|YP_005839579.1| - 0.053 12.9 2.5 9.9 5.5 0.0 3.4 1 1 3 4 4 4 0 Phage minor structural protein GP20 CCP_MauG PF03150.9 gi|385803179|ref|YP_005839579.1| - 0.065 13.5 14.9 1.1 9.5 3.7 3.4 1 1 0 2 2 2 0 Di-haem cytochrome c peroxidase PilJ PF13675.1 gi|385803179|ref|YP_005839579.1| - 0.071 13.4 8.5 6 7.2 0.6 3.8 1 1 2 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term NPV_P10 PF05531.7 gi|385803179|ref|YP_005839579.1| - 0.08 13.1 6.8 15 5.9 0.9 4.0 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein MutS_III PF05192.13 gi|385803179|ref|YP_005839579.1| - 0.097 12.4 6.0 0.15 11.7 3.9 1.5 1 1 0 1 1 1 0 MutS domain III DUF3486 PF11985.3 gi|385803179|ref|YP_005839579.1| - 0.99 9.4 7.2 2.5 8.1 5.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3486) Filament PF00038.16 gi|385803179|ref|YP_005839579.1| - 1.1 8.6 13.2 6.4 6.1 8.3 2.4 1 1 0 1 1 1 0 Intermediate filament protein DUF1033 PF06279.6 gi|385803179|ref|YP_005839579.1| - 1.6 8.5 14.7 2.1 8.1 0.2 4.4 1 1 2 4 4 4 0 Protein of unknown function (DUF1033) Gas_vesicle PF00741.13 gi|385803180|ref|YP_005839580.1| - 6.1e-16 58.0 6.4 7.9e-16 57.6 4.4 1.2 1 0 0 1 1 1 1 Gas vesicle protein GATase PF00117.23 gi|385803181|ref|YP_005839581.1| - 1.1e-48 165.2 0.0 1.2e-48 165.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|385803181|ref|YP_005839581.1| - 9.4e-08 31.7 0.3 2.2e-07 30.5 0.2 1.6 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.13 gi|385803182|ref|YP_005839582.1| - 1.7e-97 325.7 0.0 2.4e-97 325.2 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|385803182|ref|YP_005839582.1| - 1.5e-14 54.1 0.0 5.6e-14 52.3 0.0 1.9 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region Hexapep PF00132.19 gi|385803183|ref|YP_005839583.1| - 9.4e-13 47.0 6.9 2e-08 33.3 1.9 3.4 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|385803183|ref|YP_005839583.1| - 9.4e-05 21.8 2.7 0.0026 17.2 0.6 2.8 2 1 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.9 gi|385803183|ref|YP_005839583.1| - 0.00013 22.1 0.0 0.00023 21.3 0.0 1.3 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal ABC_membrane PF00664.18 gi|385803184|ref|YP_005839584.1| - 2.7e-36 125.4 4.5 3.5e-36 125.0 3.1 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.22 gi|385803184|ref|YP_005839584.1| - 1.4e-34 119.3 0.0 2.5e-34 118.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|385803184|ref|YP_005839584.1| - 4.8e-05 22.6 0.0 0.00015 21.1 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.7 gi|385803184|ref|YP_005839584.1| - 0.00013 21.0 0.0 0.00035 19.7 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_17 PF13207.1 gi|385803184|ref|YP_005839584.1| - 0.00019 22.2 0.3 0.00071 20.3 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|385803184|ref|YP_005839584.1| - 0.0029 17.6 0.0 0.16 11.8 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|385803184|ref|YP_005839584.1| - 0.0094 15.3 1.2 0.094 12.1 0.0 2.8 3 0 0 3 3 3 1 AAA domain AAA_29 PF13555.1 gi|385803184|ref|YP_005839584.1| - 0.019 14.5 0.2 0.048 13.1 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|385803184|ref|YP_005839584.1| - 0.03 13.5 0.0 0.054 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 APS_kinase PF01583.15 gi|385803184|ref|YP_005839584.1| - 0.032 13.9 0.0 0.071 12.7 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase KAP_NTPase PF07693.9 gi|385803184|ref|YP_005839584.1| - 0.035 13.0 0.0 0.074 12.0 0.0 1.6 2 0 0 2 2 2 0 KAP family P-loop domain AAA_22 PF13401.1 gi|385803184|ref|YP_005839584.1| - 0.046 13.8 0.5 0.95 9.6 0.4 2.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|385803184|ref|YP_005839584.1| - 0.067 13.3 0.1 1.5 9.0 0.1 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|385803184|ref|YP_005839584.1| - 0.068 13.4 0.1 0.3 11.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|385803184|ref|YP_005839584.1| - 0.92 9.4 8.5 0.34 10.8 2.2 2.9 3 1 0 3 3 3 0 AAA ATPase domain PAS_9 PF13426.1 gi|385803185|ref|YP_005839585.1| - 6.1e-13 49.0 0.0 1.6e-12 47.6 0.0 1.6 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|385803185|ref|YP_005839585.1| - 0.00077 19.2 0.0 0.0019 17.9 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|385803185|ref|YP_005839585.1| - 0.0015 18.4 0.0 0.0023 17.9 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|385803185|ref|YP_005839585.1| - 0.003 17.3 0.0 0.0081 15.9 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.6 gi|385803185|ref|YP_005839585.1| - 0.1 12.7 0.0 0.31 11.1 0.0 1.9 1 1 0 1 1 1 0 PAS fold DUF1819 PF08849.6 gi|385803185|ref|YP_005839585.1| - 0.11 11.8 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Putative inner membrane protein (DUF1819) Methyltransf_11 PF08241.7 gi|385803186|ref|YP_005839586.1| - 3.2e-09 37.1 0.0 5.6e-09 36.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|385803186|ref|YP_005839586.1| - 0.00028 20.6 0.0 0.00034 20.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|385803186|ref|YP_005839586.1| - 0.0012 19.2 0.0 0.0019 18.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|385803186|ref|YP_005839586.1| - 0.013 15.8 0.0 0.032 14.5 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain MetW PF07021.7 gi|385803186|ref|YP_005839586.1| - 0.023 14.0 0.0 0.031 13.6 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW N6_N4_Mtase PF01555.13 gi|385803186|ref|YP_005839586.1| - 0.087 12.2 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 DNA methylase Methyltransf_31 PF13847.1 gi|385803186|ref|YP_005839586.1| - 0.091 12.3 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF21 PF01595.15 gi|385803188|ref|YP_005839588.1| - 0.026 13.8 0.8 0.029 13.6 0.6 1.0 1 0 0 1 1 1 0 Domain of unknown function DUF21 Phage_holin PF04688.8 gi|385803188|ref|YP_005839588.1| - 0.046 13.2 0.7 0.046 13.2 0.5 1.5 2 0 0 2 2 2 0 Phage lysis protein, holin ABC2_membrane_2 PF12679.2 gi|385803188|ref|YP_005839588.1| - 0.32 9.8 2.0 0.36 9.6 1.4 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein Methyltransf_11 PF08241.7 gi|385803190|ref|YP_005839590.1| - 2.3e-15 56.8 0.0 4e-15 56.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385803190|ref|YP_005839590.1| - 2.3e-10 40.2 0.0 4.5e-10 39.2 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|385803190|ref|YP_005839590.1| - 1.8e-09 37.5 0.0 2.6e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|385803190|ref|YP_005839590.1| - 1.9e-08 34.6 0.0 6.3e-08 32.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385803190|ref|YP_005839590.1| - 6.9e-08 33.0 0.0 1.3e-07 32.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|385803190|ref|YP_005839590.1| - 1.3e-07 31.0 0.0 4.5e-07 29.2 0.0 1.8 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|385803190|ref|YP_005839590.1| - 2.3e-06 27.9 0.0 6.5e-06 26.5 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain CMAS PF02353.15 gi|385803190|ref|YP_005839590.1| - 4.6e-05 22.6 0.0 6.6e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.10 gi|385803190|ref|YP_005839590.1| - 0.00093 18.8 0.0 0.0017 18.0 0.0 1.4 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_26 PF13659.1 gi|385803190|ref|YP_005839590.1| - 0.0013 18.7 0.1 0.0025 17.8 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|385803190|ref|YP_005839590.1| - 0.0039 15.9 0.0 0.0055 15.4 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.7 gi|385803190|ref|YP_005839590.1| - 0.043 13.1 0.1 0.066 12.5 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW MTS PF05175.9 gi|385803190|ref|YP_005839590.1| - 0.13 11.6 0.1 0.23 10.8 0.1 1.5 1 1 0 1 1 1 0 Methyltransferase small domain DJ-1_PfpI PF01965.19 gi|385803191|ref|YP_005839591.1| - 1.3e-18 66.9 0.2 3.1e-18 65.6 0.1 1.7 1 1 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|385803191|ref|YP_005839591.1| - 0.038 13.2 0.1 0.2 10.9 0.0 2.0 2 0 0 2 2 2 0 Putative amidotransferase ThuA PF06283.6 gi|385803191|ref|YP_005839591.1| - 0.065 12.9 0.0 0.09 12.4 0.0 1.2 1 0 0 1 1 1 0 Trehalose utilisation Nitro_FeMo-Co PF02579.12 gi|385803191|ref|YP_005839591.1| - 0.082 12.9 0.0 0.79 9.8 0.0 2.4 3 0 0 3 3 3 0 Dinitrogenase iron-molybdenum cofactor GATase_3 PF07685.9 gi|385803191|ref|YP_005839591.1| - 0.12 11.9 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Amino_oxidase PF01593.19 gi|385803192|ref|YP_005839592.1| - 1.1e-25 90.6 0.6 9.3e-25 87.5 0.4 2.2 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|385803192|ref|YP_005839592.1| - 1.2e-16 60.4 0.1 3.8e-16 58.8 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|385803192|ref|YP_005839592.1| - 1.6e-16 60.2 0.6 2.8e-08 33.0 0.0 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|385803192|ref|YP_005839592.1| - 1.5e-09 38.1 1.5 2.3e-07 31.1 0.2 2.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|385803192|ref|YP_005839592.1| - 9.3e-07 29.1 0.1 0.0033 17.5 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|385803192|ref|YP_005839592.1| - 5.5e-06 25.6 0.2 1e-05 24.8 0.2 1.4 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|385803192|ref|YP_005839592.1| - 1.2e-05 24.5 0.1 2.1e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.9 gi|385803192|ref|YP_005839592.1| - 1.5e-05 23.6 0.1 0.0041 15.6 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.9 gi|385803192|ref|YP_005839592.1| - 5.6e-05 23.1 0.0 0.0015 18.4 0.1 2.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|385803192|ref|YP_005839592.1| - 0.00021 20.2 0.5 0.00055 18.8 0.3 1.7 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|385803192|ref|YP_005839592.1| - 0.00046 19.3 0.0 0.00066 18.8 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|385803192|ref|YP_005839592.1| - 0.011 14.6 0.6 0.02 13.7 0.4 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A Strep_67kDa_ant PF06100.6 gi|385803192|ref|YP_005839592.1| - 0.039 12.2 0.0 0.061 11.6 0.0 1.3 1 0 0 1 1 1 0 Streptococcal 67 kDa myosin-cross-reactive antigen like family NAD_binding_9 PF13454.1 gi|385803192|ref|YP_005839592.1| - 0.41 10.4 3.0 0.43 10.3 0.2 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding TK PF00265.13 gi|385803193|ref|YP_005839593.1| - 1.8e-47 161.1 0.0 3.8e-31 108.0 0.0 2.0 1 1 1 2 2 2 2 Thymidine kinase Helicase_RecD PF05127.9 gi|385803193|ref|YP_005839593.1| - 0.11 12.0 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Helicase Yip1 PF04893.12 gi|385803194|ref|YP_005839594.1| - 5.1e-16 58.6 17.0 6.3e-16 58.3 11.8 1.1 1 0 0 1 1 1 1 Yip1 domain tRNA_anti-codon PF01336.20 gi|385803195|ref|YP_005839595.1| - 9e-11 41.4 0.1 1.7e-10 40.5 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|385803195|ref|YP_005839595.1| - 2.6e-07 30.6 0.0 1.1e-06 28.6 0.0 2.1 1 0 0 1 1 1 1 S1 RNA binding domain tRNA_anti_2 PF13742.1 gi|385803195|ref|YP_005839595.1| - 0.0097 15.7 0.0 0.021 14.7 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Macoilin PF09726.4 gi|385803195|ref|YP_005839595.1| - 3 6.0 6.0 3.9 5.6 4.1 1.1 1 0 0 1 1 1 0 Transmembrane protein Med3 PF11593.3 gi|385803195|ref|YP_005839595.1| - 6.5 5.8 14.9 13 4.9 10.3 1.4 1 0 0 1 1 1 0 Mediator complex subunit 3 fungal Radical_SAM PF04055.16 gi|385803196|ref|YP_005839596.1| - 8.2e-24 84.6 0.0 1.5e-23 83.7 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|385803196|ref|YP_005839596.1| - 8.6e-08 32.1 1.3 2.2e-07 30.8 0.4 2.1 2 1 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|385803196|ref|YP_005839596.1| - 0.014 15.5 0.4 0.053 13.6 0.1 2.2 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|385803197|ref|YP_005839597.1| - 2.4e-10 40.2 0.0 5.6e-10 39.1 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|385803197|ref|YP_005839597.1| - 1.8e-07 31.0 0.0 0.00013 21.8 0.0 2.1 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|385803197|ref|YP_005839597.1| - 3.1e-07 30.4 0.0 2.8e-06 27.3 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|385803197|ref|YP_005839597.1| - 0.0014 18.7 0.1 0.0068 16.5 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_5 PF13444.1 gi|385803197|ref|YP_005839597.1| - 0.0048 17.4 0.0 0.032 14.7 0.0 2.1 1 1 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|385803197|ref|YP_005839597.1| - 0.017 14.8 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein Autoind_synth PF00765.12 gi|385803197|ref|YP_005839597.1| - 0.018 14.2 0.0 0.03 13.5 0.0 1.3 1 0 0 1 1 1 0 Autoinducer synthetase Acetyltransf_CG PF14542.1 gi|385803197|ref|YP_005839597.1| - 0.063 13.1 0.1 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF3846 PF12957.2 gi|385803198|ref|YP_005839598.1| - 0.036 13.8 0.2 0.14 11.9 0.0 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF3846) DUF2140 PF09911.4 gi|385803198|ref|YP_005839598.1| - 0.2 10.8 4.0 0.35 10.0 2.8 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2140) Mem_trans PF03547.13 gi|385803198|ref|YP_005839598.1| - 0.38 8.9 3.7 0.42 8.8 2.6 1.3 1 0 0 1 1 1 0 Membrane transport protein ATG2_CAD PF13329.1 gi|385803198|ref|YP_005839598.1| - 0.48 10.0 6.4 0.38 10.3 3.1 1.7 2 0 0 2 2 2 0 Autophagy-related protein 2 CAD motif TFIIA PF03153.8 gi|385803198|ref|YP_005839598.1| - 4.4 7.1 17.0 4.9 6.9 11.8 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit FbpA PF05833.6 gi|385803199|ref|YP_005839599.1| - 5.1e-98 328.5 0.6 6.6e-98 328.2 0.4 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|385803199|ref|YP_005839599.1| - 1.4e-25 88.9 0.0 2.7e-25 88.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF814) eRF1_1 PF03463.10 gi|385803200|ref|YP_005839600.1| - 2.2e-29 101.7 0.1 3.7e-29 100.9 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|385803200|ref|YP_005839600.1| - 6.8e-24 84.3 1.0 4.3e-23 81.7 0.0 2.6 3 0 0 3 3 3 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|385803200|ref|YP_005839600.1| - 5.1e-19 68.9 0.1 9e-19 68.1 0.1 1.4 1 0 0 1 1 1 1 eRF1 domain 2 Glyco_hydro_3_C PF01915.17 gi|385803200|ref|YP_005839600.1| - 0.025 14.1 2.8 0.062 12.8 1.3 2.0 2 1 1 3 3 3 0 Glycosyl hydrolase family 3 C-terminal domain OCD_Mu_crystall PF02423.10 gi|385803201|ref|YP_005839601.1| - 3e-08 32.7 0.0 3.1e-08 32.7 0.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family DDE_5 PF13546.1 gi|385803202|ref|YP_005839602.1| - 3e-20 72.2 0.0 4.5e-20 71.6 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.16 gi|385803202|ref|YP_005839602.1| - 3.3e-18 66.0 0.3 6e-18 65.1 0.1 1.6 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|385803202|ref|YP_005839602.1| - 0.00019 20.5 0.4 0.00083 18.4 0.3 1.8 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_6 PF13751.1 gi|385803202|ref|YP_005839602.1| - 0.0098 15.8 0.0 0.035 14.1 0.0 1.9 2 0 0 2 2 2 1 Transposase DDE domain DUF1469 PF07332.6 gi|385803203|ref|YP_005839603.1| - 0.06 13.0 0.1 0.064 12.9 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) IncA PF04156.9 gi|385803203|ref|YP_005839603.1| - 0.061 12.9 1.8 0.072 12.6 1.3 1.0 1 0 0 1 1 1 0 IncA protein PetG PF02529.10 gi|385803203|ref|YP_005839603.1| - 0.18 11.3 0.8 0.47 10.0 0.5 1.7 1 0 0 1 1 1 0 Cytochrome B6-F complex subunit 5 PT-VENN PF04829.8 gi|385803203|ref|YP_005839603.1| - 5.7 6.5 6.2 9.9 5.8 4.3 1.6 1 1 0 1 1 1 0 Pre-toxin domain with VENN motif Creatininase PF02633.9 gi|385803204|ref|YP_005839604.1| - 3e-68 229.4 0.0 3.4e-68 229.2 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Thioredoxin_4 PF13462.1 gi|385803205|ref|YP_005839605.1| - 1.7e-31 109.4 0.0 2e-31 109.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|385803205|ref|YP_005839605.1| - 3.6e-06 27.1 0.1 1.4e-05 25.2 0.1 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.15 gi|385803205|ref|YP_005839605.1| - 1.6e-05 24.5 1.2 0.0047 16.5 0.8 2.1 1 1 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_3 PF13192.1 gi|385803205|ref|YP_005839605.1| - 0.041 13.6 0.1 0.79 9.5 0.0 2.2 2 0 0 2 2 2 0 Thioredoxin domain Ribosomal_L21e PF01157.13 gi|385803206|ref|YP_005839606.1| - 0.0093 15.7 0.1 0.019 14.7 0.1 1.5 1 1 0 1 1 1 1 Ribosomal protein L21e DUF1918 PF08940.6 gi|385803206|ref|YP_005839606.1| - 0.047 13.0 0.1 0.059 12.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1918) NifZ PF04319.8 gi|385803206|ref|YP_005839606.1| - 0.052 12.9 0.0 0.058 12.7 0.0 1.2 1 0 0 1 1 1 0 NifZ domain eIF-1a PF01176.14 gi|385803206|ref|YP_005839606.1| - 0.053 12.9 0.0 0.11 11.9 0.0 1.5 1 1 0 1 1 1 0 Translation initiation factor 1A / IF-1 RNA_binding PF01877.12 gi|385803207|ref|YP_005839607.1| - 2.9e-28 98.2 0.1 3.7e-28 97.9 0.1 1.1 1 0 0 1 1 1 1 RNA binding AhpC-TSA PF00578.16 gi|385803208|ref|YP_005839608.1| - 3.2e-13 49.4 0.0 4.4e-13 49.0 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|385803208|ref|YP_005839608.1| - 3.4e-09 36.4 0.0 4.5e-09 35.9 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.1 gi|385803208|ref|YP_005839608.1| - 0.00065 19.8 0.0 0.00091 19.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|385803208|ref|YP_005839608.1| - 0.0042 17.1 0.0 0.0076 16.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like HSP20 PF00011.16 gi|385803209|ref|YP_005839609.1| - 1e-20 73.5 0.2 1.3e-20 73.1 0.1 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|385803209|ref|YP_005839609.1| - 0.0053 17.2 0.0 0.014 15.9 0.0 1.8 1 1 0 1 1 1 1 CS domain DUF4097 PF13349.1 gi|385803209|ref|YP_005839609.1| - 0.012 15.2 0.4 0.013 15.0 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4097) GvpH PF05455.6 gi|385803209|ref|YP_005839609.1| - 0.041 13.5 1.7 0.14 11.7 0.6 2.4 1 1 1 2 2 2 0 GvpH PIH1 PF08190.7 gi|385803209|ref|YP_005839609.1| - 0.043 13.2 0.0 0.048 13.0 0.0 1.2 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 Frataxin_Cyay PF01491.11 gi|385803209|ref|YP_005839609.1| - 0.12 12.1 0.3 2 8.2 0.2 2.5 2 1 0 2 2 2 0 Frataxin-like domain AsnC_trans_reg PF01037.16 gi|385803210|ref|YP_005839610.1| - 1.4e-15 56.7 0.2 2.4e-15 55.9 0.1 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|385803210|ref|YP_005839610.1| - 3.4e-05 23.1 0.1 6.9e-05 22.1 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|385803210|ref|YP_005839610.1| - 3.7e-05 23.1 1.7 5.9e-05 22.5 0.3 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|385803210|ref|YP_005839610.1| - 7.2e-05 22.3 0.2 0.00016 21.2 0.1 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|385803210|ref|YP_005839610.1| - 0.0006 19.4 0.0 0.0014 18.2 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|385803210|ref|YP_005839610.1| - 0.00071 19.1 0.0 0.0013 18.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain FeoC PF09012.5 gi|385803210|ref|YP_005839610.1| - 0.001 18.7 0.0 0.0018 17.9 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator MarR PF01047.17 gi|385803210|ref|YP_005839610.1| - 0.001 18.7 0.0 0.0024 17.5 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|385803210|ref|YP_005839610.1| - 0.0017 17.9 0.2 0.004 16.7 0.0 1.8 2 0 0 2 2 1 1 Homeodomain-like domain HTH_38 PF13936.1 gi|385803210|ref|YP_005839610.1| - 0.0022 17.5 0.0 0.17 11.5 0.0 2.6 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|385803210|ref|YP_005839610.1| - 0.0044 16.7 0.0 0.0091 15.7 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|385803210|ref|YP_005839610.1| - 0.0064 16.1 0.0 0.015 14.9 0.0 1.6 2 0 0 2 2 2 1 HTH domain HTH_Tnp_ISL3 PF13542.1 gi|385803210|ref|YP_005839610.1| - 0.01 15.0 0.0 0.025 13.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Fe_dep_repress PF01325.14 gi|385803210|ref|YP_005839610.1| - 0.026 14.4 0.0 0.06 13.2 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.2 gi|385803210|ref|YP_005839610.1| - 0.026 14.3 0.1 0.046 13.5 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|385803210|ref|YP_005839610.1| - 0.042 13.9 0.1 0.092 12.9 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn helix RPA_C PF08784.6 gi|385803210|ref|YP_005839610.1| - 0.043 14.2 0.0 0.16 12.3 0.0 1.8 2 0 0 2 2 2 0 Replication protein A C terminal HTH_28 PF13518.1 gi|385803210|ref|YP_005839610.1| - 0.066 13.2 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_13 PF11972.3 gi|385803210|ref|YP_005839610.1| - 0.076 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_27 PF13463.1 gi|385803210|ref|YP_005839610.1| - 0.081 13.2 0.1 0.28 11.5 0.1 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain Aminotran_1_2 PF00155.16 gi|385803211|ref|YP_005839611.1| - 2.7e-70 237.1 0.0 3.1e-70 236.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|385803211|ref|YP_005839611.1| - 1.8e-06 27.3 0.0 3e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|385803211|ref|YP_005839611.1| - 4e-05 22.5 0.0 0.0002 20.2 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|385803211|ref|YP_005839611.1| - 0.0019 17.3 0.1 0.0029 16.7 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family CARDB PF07705.6 gi|385803212|ref|YP_005839612.1| - 5.7e-10 39.1 16.9 0.00024 21.0 0.2 4.3 4 0 0 4 4 4 4 CARDB Transglut_C PF00927.17 gi|385803212|ref|YP_005839612.1| - 0.0077 16.2 0.3 0.09 12.8 0.0 2.7 3 1 0 3 3 3 1 Transglutaminase family, C-terminal ig like domain ABC_tran PF00005.22 gi|385803213|ref|YP_005839613.1| - 4.3e-34 117.7 0.0 6.3e-34 117.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385803213|ref|YP_005839613.1| - 1.7e-10 41.3 0.0 1.9e-05 24.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|385803213|ref|YP_005839613.1| - 1.4e-06 27.7 0.1 0.0042 16.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|385803213|ref|YP_005839613.1| - 8.2e-06 25.9 0.8 4.7e-05 23.5 0.6 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|385803213|ref|YP_005839613.1| - 3e-05 23.4 0.2 5.1e-05 22.7 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|385803213|ref|YP_005839613.1| - 0.00035 19.8 0.0 0.00056 19.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|385803213|ref|YP_005839613.1| - 0.0015 18.5 0.1 0.0024 17.9 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|385803213|ref|YP_005839613.1| - 0.0027 17.6 0.1 0.005 16.7 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|385803213|ref|YP_005839613.1| - 0.0036 16.7 1.9 0.016 14.6 0.8 2.2 1 1 1 2 2 2 1 AAA-like domain AAA_23 PF13476.1 gi|385803213|ref|YP_005839613.1| - 0.0039 17.5 0.0 0.0069 16.7 0.0 1.5 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|385803213|ref|YP_005839613.1| - 0.0049 16.4 0.2 0.076 12.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|385803213|ref|YP_005839613.1| - 0.0051 16.2 0.0 0.088 12.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|385803213|ref|YP_005839613.1| - 0.0055 17.5 0.4 0.01 16.6 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|385803213|ref|YP_005839613.1| - 0.016 14.2 0.0 2.4 7.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_14 PF13173.1 gi|385803213|ref|YP_005839613.1| - 0.03 14.2 0.0 0.088 12.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|385803213|ref|YP_005839613.1| - 0.039 13.3 0.1 0.089 12.2 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein T2SE PF00437.15 gi|385803213|ref|YP_005839613.1| - 0.039 12.8 0.0 0.066 12.0 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein MMR_HSR1 PF01926.18 gi|385803213|ref|YP_005839613.1| - 0.062 13.2 0.4 0.16 11.9 0.3 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase ArgK PF03308.11 gi|385803213|ref|YP_005839613.1| - 0.073 11.8 0.1 0.12 11.1 0.1 1.3 1 0 0 1 1 1 0 ArgK protein MobB PF03205.9 gi|385803213|ref|YP_005839613.1| - 0.084 12.5 0.1 0.21 11.2 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|385803213|ref|YP_005839613.1| - 0.11 12.2 0.1 0.33 10.7 0.0 1.8 2 0 0 2 2 1 0 Part of AAA domain SbcCD_C PF13558.1 gi|385803213|ref|YP_005839613.1| - 0.13 12.2 0.0 1.1 9.1 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.1 gi|385803213|ref|YP_005839613.1| - 0.14 12.4 0.7 0.25 11.6 0.5 1.8 1 1 0 1 1 1 0 AAA domain G-alpha PF00503.15 gi|385803213|ref|YP_005839613.1| - 0.15 10.7 0.0 0.15 10.7 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA PF00004.24 gi|385803213|ref|YP_005839613.1| - 0.2 11.8 0.8 23 5.1 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MacB_PCD PF12704.2 gi|385803214|ref|YP_005839614.1| - 6.1e-27 94.7 4.3 6.1e-27 94.7 3.0 2.8 2 1 1 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|385803214|ref|YP_005839614.1| - 1.7e-19 69.7 14.0 8.8e-19 67.4 7.2 2.2 2 0 0 2 2 2 1 FtsX-like permease family TarH PF02203.10 gi|385803214|ref|YP_005839614.1| - 0.016 15.0 0.2 0.035 13.9 0.1 1.5 1 0 0 1 1 1 0 Tar ligand binding domain homologue DUF4131 PF13567.1 gi|385803214|ref|YP_005839614.1| - 0.017 14.5 0.0 0.017 14.5 0.0 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) YjgP_YjgQ PF03739.9 gi|385803214|ref|YP_005839614.1| - 0.47 9.1 5.6 0.71 8.5 2.6 2.0 2 0 0 2 2 2 0 Predicted permease YjgP/YjgQ family GSDH PF07995.6 gi|385803215|ref|YP_005839615.1| - 1e-107 360.0 0.0 1.2e-107 359.7 0.0 1.1 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase PapC_C PF13953.1 gi|385803215|ref|YP_005839615.1| - 0.12 12.0 0.1 0.57 9.8 0.0 2.0 2 0 0 2 2 2 0 PapC C-terminal domain DUF543 PF04418.7 gi|385803217|ref|YP_005839617.1| - 0.61 10.0 3.2 17 5.4 2.6 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF543) TrbC PF04956.8 gi|385803217|ref|YP_005839617.1| - 0.65 10.0 4.6 1.2 9.1 3.2 1.4 1 0 0 1 1 1 0 TrbC/VIRB2 family SKG6 PF08693.5 gi|385803217|ref|YP_005839617.1| - 3.7 6.9 12.2 0.16 11.3 0.4 2.8 3 0 0 3 3 3 0 Transmembrane alpha-helix domain TMV_coat PF00721.16 gi|385803218|ref|YP_005839618.1| - 0.062 13.2 0.1 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Virus coat protein (TMV like) ALIX_LYPXL_bnd PF13949.1 gi|385803219|ref|YP_005839619.1| - 3.9e-07 29.3 55.2 3.8e-06 26.0 14.9 2.4 2 0 0 2 2 2 2 ALIX V-shaped domain binding to HIV AAA_23 PF13476.1 gi|385803219|ref|YP_005839619.1| - 5.4e-07 30.1 29.7 5.4e-07 30.1 20.6 4.6 1 1 1 2 2 1 1 AAA domain Seryl_tRNA_N PF02403.17 gi|385803219|ref|YP_005839619.1| - 1.8e-06 27.9 66.1 0.0092 15.9 8.6 5.5 2 2 3 5 5 5 3 Seryl-tRNA synthetase N-terminal domain Spc7 PF08317.6 gi|385803219|ref|YP_005839619.1| - 2e-06 26.7 74.9 0.037 12.6 11.8 4.6 2 2 1 4 4 4 4 Spc7 kinetochore protein Reo_sigmaC PF04582.7 gi|385803219|ref|YP_005839619.1| - 5.2e-06 25.8 33.9 0.0024 17.0 6.7 4.3 1 1 3 4 4 4 3 Reovirus sigma C capsid protein CENP-F_leu_zip PF10473.4 gi|385803219|ref|YP_005839619.1| - 8.6e-06 25.6 74.2 0.069 13.0 4.7 5.6 2 2 3 5 5 5 4 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3584 PF12128.3 gi|385803219|ref|YP_005839619.1| - 3.3e-05 21.4 62.3 0.00028 18.3 18.6 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3584) AAA_13 PF13166.1 gi|385803219|ref|YP_005839619.1| - 0.00012 20.7 63.6 0.0011 17.5 20.7 3.1 1 1 0 2 2 2 1 AAA domain Myosin_tail_1 PF01576.14 gi|385803219|ref|YP_005839619.1| - 0.00022 19.1 68.4 0.0021 15.8 18.1 2.7 2 1 0 2 2 2 2 Myosin tail WEMBL PF05701.6 gi|385803219|ref|YP_005839619.1| - 0.0012 17.4 54.3 0.026 13.0 15.8 2.4 2 0 0 2 2 2 2 Weak chloroplast movement under blue light Prefoldin PF02996.12 gi|385803219|ref|YP_005839619.1| - 0.0016 18.1 51.0 0.36 10.4 3.8 7.4 3 2 4 7 7 7 4 Prefoldin subunit APG6 PF04111.7 gi|385803219|ref|YP_005839619.1| - 0.0017 17.4 20.4 0.0017 17.4 14.1 4.1 2 2 3 5 5 5 1 Autophagy protein Apg6 AAA_21 PF13304.1 gi|385803219|ref|YP_005839619.1| - 0.0022 18.0 15.7 0.0028 17.6 2.9 2.4 2 0 0 2 2 2 1 AAA domain IncA PF04156.9 gi|385803219|ref|YP_005839619.1| - 0.0023 17.5 27.6 0.0023 17.5 19.1 4.4 2 2 1 3 3 3 2 IncA protein DUF1664 PF07889.7 gi|385803219|ref|YP_005839619.1| - 0.0058 16.4 7.7 0.0058 16.4 5.3 6.1 2 2 5 7 7 7 1 Protein of unknown function (DUF1664) AAA_27 PF13514.1 gi|385803219|ref|YP_005839619.1| - 0.011 13.5 49.4 0.12 10.0 13.6 2.3 2 0 0 2 2 2 0 AAA domain Shugoshin_N PF07558.6 gi|385803219|ref|YP_005839619.1| - 0.015 15.0 0.9 0.015 15.0 0.6 4.6 4 1 1 5 5 3 0 Shugoshin N-terminal coiled-coil region Fib_alpha PF08702.5 gi|385803219|ref|YP_005839619.1| - 0.062 13.4 60.5 0.27 11.3 8.2 5.0 3 2 1 4 4 4 0 Fibrinogen alpha/beta chain family NPV_P10 PF05531.7 gi|385803219|ref|YP_005839619.1| - 0.068 13.4 46.9 0.39 11.0 0.9 6.8 2 2 4 6 6 6 0 Nucleopolyhedrovirus P10 protein DUF342 PF03961.8 gi|385803219|ref|YP_005839619.1| - 0.086 11.2 54.3 0.033 12.6 4.2 4.2 1 1 2 4 4 4 0 Protein of unknown function (DUF342) Filament PF00038.16 gi|385803219|ref|YP_005839619.1| - 0.19 11.1 66.1 0.12 11.8 9.1 4.0 1 1 2 3 3 3 0 Intermediate filament protein Atg14 PF10186.4 gi|385803219|ref|YP_005839619.1| - 0.57 9.0 67.5 0.45 9.4 11.0 4.8 2 2 3 5 5 5 0 UV radiation resistance protein and autophagy-related subunit 14 FlxA PF14282.1 gi|385803219|ref|YP_005839619.1| - 1 9.3 72.9 1.9 8.4 12.5 5.4 2 2 2 5 5 5 0 FlxA-like protein Phage_GP20 PF06810.6 gi|385803219|ref|YP_005839619.1| - 1.2 8.5 63.0 0.14 11.5 8.6 5.8 2 2 3 5 5 5 0 Phage minor structural protein GP20 TBPIP PF07106.8 gi|385803219|ref|YP_005839619.1| - 1.3 8.5 68.1 3.9 7.0 6.3 5.0 2 2 2 4 4 4 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) LPP PF04728.8 gi|385803219|ref|YP_005839619.1| - 1.8 8.3 14.1 4.6 7.1 0.2 5.8 7 0 0 7 7 5 0 Lipoprotein leucine-zipper GAS PF13851.1 gi|385803219|ref|YP_005839619.1| - 2.5 7.2 68.0 0.19 10.9 11.5 4.6 3 2 2 5 5 4 0 Growth-arrest specific micro-tubule binding Flagellin_C PF00700.16 gi|385803219|ref|YP_005839619.1| - 3.2 7.9 29.0 3.1 8.0 1.0 5.9 4 2 1 5 5 5 0 Bacterial flagellin C-terminal helical region Cast PF10174.4 gi|385803219|ref|YP_005839619.1| - 3.3 5.6 67.7 1.6 6.6 21.2 2.8 1 1 0 2 2 2 0 RIM-binding protein of the cytomatrix active zone DivIC PF04977.10 gi|385803219|ref|YP_005839619.1| - 4.4 6.8 71.1 0.025 14.0 3.8 9.1 3 2 5 8 8 7 0 Septum formation initiator HALZ PF02183.13 gi|385803219|ref|YP_005839619.1| - 4.8 6.9 21.5 1.6 8.5 0.5 5.1 4 1 1 5 5 5 0 Homeobox associated leucine zipper FliJ PF02050.11 gi|385803219|ref|YP_005839619.1| - 5.1 7.1 51.7 0.072 13.1 7.0 5.3 2 2 2 5 5 5 0 Flagellar FliJ protein Laminin_II PF06009.7 gi|385803219|ref|YP_005839619.1| - 6 6.6 50.3 1.3 8.7 3.9 6.3 3 2 3 6 6 6 0 Laminin Domain II DUF4140 PF13600.1 gi|385803219|ref|YP_005839619.1| - 7.8 7.0 53.4 1.7 9.1 2.6 7.0 2 2 4 6 6 6 0 N-terminal domain of unknown function (DUF4140) FliD_N PF02465.13 gi|385803219|ref|YP_005839619.1| - 8.5 6.8 43.3 6.6 7.1 1.4 7.5 3 2 4 7 7 6 0 Flagellar hook-associated protein 2 N-terminus ATG16 PF08614.6 gi|385803219|ref|YP_005839619.1| - 8.5 6.1 68.4 0.73 9.6 9.3 4.8 2 2 2 4 4 4 0 Autophagy protein 16 (ATG16) BLOC1_2 PF10046.4 gi|385803219|ref|YP_005839619.1| - 8.8 6.5 55.0 8.4 6.5 1.7 7.2 2 2 1 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 adh_short PF00106.20 gi|385803220|ref|YP_005839620.1| - 3.6e-17 62.7 6.2 7.5e-17 61.7 4.3 1.4 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|385803220|ref|YP_005839620.1| - 5.2e-09 36.0 2.2 1e-08 35.0 1.5 1.4 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|385803220|ref|YP_005839620.1| - 1.2e-08 34.6 0.1 1.6e-08 34.3 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|385803220|ref|YP_005839620.1| - 0.0028 17.4 2.0 0.0039 16.9 0.5 1.9 2 0 0 2 2 2 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CarboxypepD_reg PF13620.1 gi|385803221|ref|YP_005839621.1| - 6.2e-18 64.6 17.6 6.6e-10 38.9 0.9 4.4 4 0 0 4 4 4 4 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|385803221|ref|YP_005839621.1| - 3e-11 43.2 8.0 0.00037 20.5 0.3 4.2 2 1 1 4 4 4 3 Domain of unknown function (DUF4480) Big_1 PF02369.11 gi|385803221|ref|YP_005839621.1| - 2.3e-06 27.4 7.1 0.054 13.4 0.2 3.7 3 0 0 3 3 3 2 Bacterial Ig-like domain (group 1) DUF2606 PF10794.4 gi|385803221|ref|YP_005839621.1| - 4.4e-05 22.9 1.2 0.59 9.5 0.0 3.2 3 0 0 3 3 3 2 Protein of unknown function (DUF2606) fn3_3 PF14686.1 gi|385803221|ref|YP_005839621.1| - 0.00015 21.7 0.3 0.016 15.2 0.1 2.5 2 0 0 2 2 2 1 Polysaccharide lyase family 4, domain II PEGA PF08308.6 gi|385803221|ref|YP_005839621.1| - 0.00032 20.4 7.4 0.024 14.3 0.1 3.1 3 1 0 3 3 3 2 PEGA domain DUF2012 PF09430.5 gi|385803221|ref|YP_005839621.1| - 0.00039 20.2 0.2 0.0017 18.1 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2012) DUF4198 PF10670.4 gi|385803221|ref|YP_005839621.1| - 0.00074 19.5 0.3 0.56 10.1 0.0 3.1 3 0 0 3 3 3 1 Domain of unknown function (DUF4198) Cna_B PF05738.8 gi|385803221|ref|YP_005839621.1| - 0.0013 18.4 0.3 0.012 15.3 0.1 2.5 2 0 0 2 2 2 1 Cna protein B-type domain EMP24_GP25L PF01105.19 gi|385803221|ref|YP_005839621.1| - 0.11 12.1 0.1 0.38 10.4 0.0 1.9 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD zf-RING_3 PF14369.1 gi|385803223|ref|YP_005839623.1| - 0.036 14.0 0.4 0.55 10.2 0.0 2.3 2 0 0 2 2 2 0 zinc-finger Orthopox_A5L PF06193.6 gi|385803223|ref|YP_005839623.1| - 0.043 13.7 1.9 0.052 13.4 1.3 1.2 1 0 0 1 1 1 0 Orthopoxvirus A5L protein-like DUF4428 PF14471.1 gi|385803223|ref|YP_005839623.1| - 0.09 12.5 0.1 0.26 11.0 0.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) Adeno_PX PF05829.7 gi|385803224|ref|YP_005839624.1| - 0.31 10.5 4.4 2.5 7.6 0.0 2.6 2 0 0 2 2 2 0 Adenovirus late L2 mu core protein (Protein X) DUF1129 PF06570.6 gi|385803224|ref|YP_005839624.1| - 1.9 7.7 6.4 0.51 9.6 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) DUF626 PF04776.7 gi|385803225|ref|YP_005839625.1| - 0.0085 16.4 0.1 0.011 16.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF626) CBS PF00571.23 gi|385803227|ref|YP_005839627.1| - 1.3e-21 76.0 2.9 5.5e-12 45.2 0.1 3.0 2 1 0 2 2 2 2 CBS domain HypA PF01155.14 gi|385803227|ref|YP_005839627.1| - 0.0012 18.5 1.5 0.0035 17.0 1.1 1.9 1 1 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|385803227|ref|YP_005839627.1| - 0.0036 17.2 4.5 0.01 15.7 3.1 1.7 1 1 0 1 1 1 1 Zinc ribbon domain DZR PF12773.2 gi|385803227|ref|YP_005839627.1| - 0.018 14.8 1.1 0.03 14.1 0.7 1.3 1 0 0 1 1 1 0 Double zinc ribbon NOB1_Zn_bind PF08772.6 gi|385803227|ref|YP_005839627.1| - 0.018 14.8 0.1 0.038 13.8 0.1 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DUF4371 PF14291.1 gi|385803227|ref|YP_005839627.1| - 0.024 14.1 0.2 0.03 13.8 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4371) Prok-RING_1 PF14446.1 gi|385803227|ref|YP_005839627.1| - 0.029 14.0 0.4 0.049 13.3 0.3 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C2HC5 PF06221.8 gi|385803227|ref|YP_005839627.1| - 0.041 13.6 0.2 0.067 12.9 0.2 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type UNC-79 PF14776.1 gi|385803227|ref|YP_005839627.1| - 0.052 11.9 1.0 0.098 11.0 0.0 1.7 2 0 0 2 2 2 0 Cation-channel complex subunit UNC-79 zf-RING_3 PF14369.1 gi|385803227|ref|YP_005839627.1| - 0.29 11.1 4.2 0.71 9.9 2.9 1.8 1 1 0 1 1 1 0 zinc-finger TFIIS_C PF01096.13 gi|385803227|ref|YP_005839627.1| - 0.37 10.4 2.3 2 8.1 0.0 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.1 gi|385803227|ref|YP_005839627.1| - 0.6 9.6 4.6 1 8.9 3.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|385803227|ref|YP_005839627.1| - 3.3 7.0 5.8 14 5.0 0.8 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding GATase_3 PF07685.9 gi|385803228|ref|YP_005839628.1| - 4.2e-30 104.4 0.0 6.8e-30 103.7 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|385803228|ref|YP_005839628.1| - 7.6e-20 71.1 0.0 2e-19 69.8 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|385803228|ref|YP_005839628.1| - 4e-11 42.9 0.0 1.2e-05 24.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain Fer4_15 PF13459.1 gi|385803229|ref|YP_005839629.1| - 1.2e-08 35.3 1.9 2e-08 34.6 1.3 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain CbiG_N PF11760.3 gi|385803230|ref|YP_005839630.1| - 2.9e-26 90.9 0.5 1.7e-25 88.5 0.0 2.4 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.11 gi|385803230|ref|YP_005839630.1| - 2e-25 89.3 0.0 4.1e-25 88.3 0.0 1.5 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus TP_methylase PF00590.15 gi|385803231|ref|YP_005839631.1| - 6.2e-38 130.6 0.3 7.4e-38 130.3 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases RraB PF06877.6 gi|385803231|ref|YP_005839631.1| - 0.067 13.8 0.0 0.2 12.3 0.0 1.7 1 0 0 1 1 1 0 Regulator of ribonuclease activity B TP_methylase PF00590.15 gi|385803232|ref|YP_005839632.1| - 2.9e-33 115.3 0.0 3.6e-33 115.0 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Glyoxalase_2 PF12681.2 gi|385803232|ref|YP_005839632.1| - 0.11 13.1 0.0 0.23 12.0 0.0 1.7 1 1 0 1 1 1 0 Glyoxalase-like domain CopK PF11525.3 gi|385803232|ref|YP_005839632.1| - 0.16 11.6 0.0 0.3 10.7 0.0 1.4 1 0 0 1 1 1 0 Copper resistance protein K Methyltransf_18 PF12847.2 gi|385803233|ref|YP_005839633.1| - 2.8e-10 40.7 0.0 5.1e-10 39.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|385803233|ref|YP_005839633.1| - 1.3e-06 27.9 0.0 3.5e-06 26.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase small domain PCMT PF01135.14 gi|385803233|ref|YP_005839633.1| - 7.6e-06 25.5 0.0 1.2e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|385803233|ref|YP_005839633.1| - 1e-05 25.1 0.0 1.2e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|385803233|ref|YP_005839633.1| - 2.2e-05 24.4 0.1 3.5e-05 23.8 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|385803233|ref|YP_005839633.1| - 3.1e-05 23.2 0.1 4.9e-05 22.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.15 gi|385803233|ref|YP_005839633.1| - 0.00049 19.1 0.1 0.00072 18.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|385803233|ref|YP_005839633.1| - 0.00057 19.0 0.0 0.00084 18.4 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Cons_hypoth95 PF03602.10 gi|385803233|ref|YP_005839633.1| - 0.00059 19.2 0.0 0.00085 18.7 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 DOT1 PF08123.8 gi|385803233|ref|YP_005839633.1| - 0.0014 17.9 0.0 0.0024 17.2 0.0 1.4 1 0 0 1 1 1 1 Histone methylation protein DOT1 UPF0020 PF01170.13 gi|385803233|ref|YP_005839633.1| - 0.012 15.2 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.1 gi|385803233|ref|YP_005839633.1| - 0.022 15.1 0.0 0.029 14.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.11 gi|385803233|ref|YP_005839633.1| - 0.066 12.7 0.3 0.11 12.0 0.2 1.3 1 1 0 1 1 1 0 Met-10+ like-protein Methyltransf_23 PF13489.1 gi|385803233|ref|YP_005839633.1| - 0.089 12.5 0.0 0.11 12.1 0.0 1.2 1 1 0 1 1 1 0 Methyltransferase domain GCD14 PF08704.5 gi|385803233|ref|YP_005839633.1| - 0.09 12.2 0.0 0.14 11.6 0.0 1.4 1 1 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Methyltransf_12 PF08242.7 gi|385803233|ref|YP_005839633.1| - 0.12 12.8 0.0 0.18 12.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain CbiM PF01891.11 gi|385803234|ref|YP_005839634.1| - 2.3e-49 167.8 19.5 2.5e-49 167.6 13.5 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region CbiN PF02553.10 gi|385803235|ref|YP_005839635.1| - 5.1e-08 32.7 0.0 7.2e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 Cobalt transport protein component CbiN CbiQ PF02361.11 gi|385803236|ref|YP_005839636.1| - 2.1e-32 112.4 15.1 2.1e-32 112.4 10.5 1.4 2 0 0 2 2 2 1 Cobalt transport protein DUF997 PF06196.7 gi|385803236|ref|YP_005839636.1| - 0.25 10.8 2.0 0.23 11.0 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF997) ABC_tran PF00005.22 gi|385803237|ref|YP_005839637.1| - 3.9e-29 101.7 0.0 4.9e-29 101.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385803237|ref|YP_005839637.1| - 2.2e-10 40.9 0.0 0.00023 21.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|385803237|ref|YP_005839637.1| - 3.2e-07 29.7 0.0 6.9e-05 22.1 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|385803237|ref|YP_005839637.1| - 7.1e-05 22.2 0.1 0.00012 21.4 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|385803237|ref|YP_005839637.1| - 0.00013 21.2 0.0 0.37 9.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|385803237|ref|YP_005839637.1| - 0.0017 17.5 0.0 0.0024 17.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|385803237|ref|YP_005839637.1| - 0.0025 18.1 0.0 0.0032 17.8 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|385803237|ref|YP_005839637.1| - 0.0074 16.2 0.1 0.016 15.2 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain Miro PF08477.8 gi|385803237|ref|YP_005839637.1| - 0.012 16.1 0.0 0.02 15.4 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein AAA_25 PF13481.1 gi|385803237|ref|YP_005839637.1| - 0.012 15.0 0.0 0.031 13.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|385803237|ref|YP_005839637.1| - 0.029 14.5 0.0 0.038 14.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|385803237|ref|YP_005839637.1| - 0.043 13.2 0.0 1.7 8.0 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain Zeta_toxin PF06414.7 gi|385803237|ref|YP_005839637.1| - 0.061 12.4 0.0 0.096 11.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_13 PF13166.1 gi|385803237|ref|YP_005839637.1| - 0.062 11.7 0.0 0.27 9.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|385803237|ref|YP_005839637.1| - 0.095 12.1 0.1 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MutS_V PF00488.16 gi|385803237|ref|YP_005839637.1| - 0.097 12.0 0.0 0.22 10.8 0.0 1.5 2 0 0 2 2 2 0 MutS domain V Arch_ATPase PF01637.13 gi|385803237|ref|YP_005839637.1| - 0.11 12.1 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_30 PF13604.1 gi|385803237|ref|YP_005839637.1| - 0.14 11.6 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain RHH_1 PF01402.16 gi|385803238|ref|YP_005839638.1| - 0.028 14.3 0.1 0.038 13.8 0.0 1.2 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family WGG PF10273.4 gi|385803238|ref|YP_005839638.1| - 0.35 10.9 1.7 0.7 10.0 1.1 1.6 1 1 0 1 1 1 0 Pre-rRNA-processing protein TSR2 adh_short_C2 PF13561.1 gi|385803239|ref|YP_005839639.1| - 2.4e-21 76.6 0.0 2.8e-21 76.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|385803239|ref|YP_005839639.1| - 4e-21 75.6 0.8 4.9e-21 75.3 0.5 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|385803239|ref|YP_005839639.1| - 3.4e-09 36.6 0.2 5.1e-09 36.0 0.1 1.3 1 0 0 1 1 1 1 KR domain MFS_1 PF07690.11 gi|385803240|ref|YP_005839640.1| - 1.4e-40 139.0 40.5 1.4e-40 139.0 28.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.14 gi|385803240|ref|YP_005839640.1| - 0.00026 19.6 1.3 0.00026 19.6 0.9 2.0 2 0 0 2 2 2 1 LacY proton/sugar symporter MFS_2 PF13347.1 gi|385803240|ref|YP_005839640.1| - 0.0005 18.5 24.7 0.001 17.5 17.1 1.5 1 0 0 1 1 1 1 MFS/sugar transport protein DUF4131 PF13567.1 gi|385803240|ref|YP_005839640.1| - 0.0074 15.7 1.8 0.0074 15.7 1.2 3.4 2 1 0 3 3 3 1 Domain of unknown function (DUF4131) DUF1228 PF06779.9 gi|385803240|ref|YP_005839640.1| - 0.025 14.5 0.5 0.025 14.5 0.4 3.4 4 1 0 4 4 4 0 Protein of unknown function (DUF1228) YwiC PF14256.1 gi|385803240|ref|YP_005839640.1| - 8.2 6.5 34.1 1.3 9.1 1.5 4.8 2 1 1 5 5 5 0 YwiC-like protein DDE_Tnp_1 PF01609.16 gi|385803241|ref|YP_005839641.1| - 2.3e-19 69.7 0.0 3.3e-19 69.2 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.1 gi|385803241|ref|YP_005839641.1| - 0.0045 15.2 0.0 0.0068 14.6 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain group 1 DUF2015 PF09435.5 gi|385803241|ref|YP_005839641.1| - 0.031 14.0 0.1 0.078 12.7 0.1 1.6 1 0 0 1 1 1 0 Fungal protein of unknown function (DUF2015) DHFR_1 PF00186.14 gi|385803242|ref|YP_005839642.1| - 2.2e-38 131.3 0.0 2.4e-38 131.2 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase RibD_C PF01872.12 gi|385803242|ref|YP_005839642.1| - 0.051 13.1 0.0 0.078 12.5 0.0 1.3 1 1 0 1 1 1 0 RibD C-terminal domain PMSR PF01625.16 gi|385803243|ref|YP_005839643.1| - 7.6e-66 220.8 1.1 9.1e-66 220.5 0.8 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase Aldedh PF00171.17 gi|385803244|ref|YP_005839644.1| - 2.1e-26 92.2 1.5 1.7e-20 72.8 0.2 2.1 2 0 0 2 2 2 2 Aldehyde dehydrogenase family AA_kinase PF00696.23 gi|385803245|ref|YP_005839645.1| - 2.3e-42 145.1 2.8 2.9e-42 144.8 2.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family Lipase_GDSL_2 PF13472.1 gi|385803245|ref|YP_005839645.1| - 0.084 13.0 0.1 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family Glyco_hydro_3_C PF01915.17 gi|385803245|ref|YP_005839645.1| - 0.6 9.5 4.5 0.27 10.7 1.1 1.8 2 0 0 2 2 2 0 Glycosyl hydrolase family 3 C-terminal domain P5CR_dimer PF14748.1 gi|385803246|ref|YP_005839646.1| - 2.6e-34 117.4 0.4 2.6e-34 117.4 0.3 1.6 2 0 0 2 2 2 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|385803246|ref|YP_005839646.1| - 5.9e-09 36.2 0.1 2.3e-08 34.3 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|385803246|ref|YP_005839646.1| - 8.4e-05 22.4 0.1 0.00025 20.9 0.0 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|385803246|ref|YP_005839646.1| - 0.0046 16.6 0.0 0.011 15.3 0.0 1.7 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|385803246|ref|YP_005839646.1| - 0.0075 15.4 0.0 0.015 14.4 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|385803246|ref|YP_005839646.1| - 0.012 15.6 0.2 0.075 13.0 0.1 2.5 1 1 1 2 2 2 0 TrkA-N domain PDH PF02153.12 gi|385803246|ref|YP_005839646.1| - 0.053 12.3 0.8 0.11 11.3 0.2 1.7 2 0 0 2 2 2 0 Prephenate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|385803246|ref|YP_005839646.1| - 0.076 12.7 2.0 0.83 9.3 0.1 2.4 1 1 1 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ThiF PF00899.16 gi|385803246|ref|YP_005839646.1| - 0.21 11.3 3.1 0.46 10.3 1.4 2.2 1 1 1 2 2 2 0 ThiF family FmdA_AmdA PF03069.10 gi|385803247|ref|YP_005839647.1| - 8.9e-52 175.9 0.2 5.5e-47 160.2 0.0 2.0 1 1 1 2 2 2 2 Acetamidase/Formamidase family UPF0547 PF10571.4 gi|385803247|ref|YP_005839647.1| - 0.0023 17.6 2.7 0.0085 15.7 1.9 1.8 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|385803247|ref|YP_005839647.1| - 0.011 15.5 0.3 0.02 14.6 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_S27e PF01667.12 gi|385803247|ref|YP_005839647.1| - 0.025 14.1 0.0 0.047 13.2 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 Zn-ribbon_8 PF09723.5 gi|385803247|ref|YP_005839647.1| - 0.043 13.7 0.3 0.15 12.0 0.3 1.8 2 0 0 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|385803247|ref|YP_005839647.1| - 0.1 11.9 1.0 0.29 10.4 0.7 1.8 1 0 0 1 1 1 0 TFIIB zinc-binding DUF4379 PF14311.1 gi|385803247|ref|YP_005839647.1| - 0.2 11.5 1.7 0.55 10.0 1.2 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4379) DNA_RNApol_7kD PF03604.8 gi|385803247|ref|YP_005839647.1| - 0.22 11.0 3.5 1.3 8.5 2.4 2.1 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|385803247|ref|YP_005839647.1| - 0.25 10.8 2.0 2.6 7.6 1.3 2.3 1 1 1 2 2 2 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|385803247|ref|YP_005839647.1| - 0.4 10.4 3.3 9.9 5.9 0.2 3.0 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.1 gi|385803247|ref|YP_005839647.1| - 2.3 7.5 5.7 32 3.9 4.0 2.3 1 1 1 2 2 2 0 zinc-ribbon domain ThiS PF02597.15 gi|385803248|ref|YP_005839648.1| - 2e-08 34.5 0.0 6e-08 32.9 0.0 1.7 2 0 0 2 2 2 1 ThiS family Urm1 PF09138.6 gi|385803248|ref|YP_005839648.1| - 0.0059 16.6 0.0 0.0069 16.4 0.0 1.2 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) MatE PF01554.13 gi|385803250|ref|YP_005839650.1| - 5.9e-44 149.5 35.7 2.3e-22 79.3 9.1 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|385803250|ref|YP_005839650.1| - 5e-09 36.1 6.2 5e-09 36.1 4.3 4.6 3 2 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain EcsB PF05975.7 gi|385803250|ref|YP_005839650.1| - 0.54 8.6 4.5 0.15 10.4 0.2 2.0 2 0 0 2 2 2 0 Bacterial ABC transporter protein EcsB DEAD PF00270.24 gi|385803251|ref|YP_005839651.1| - 1.9e-18 66.5 0.0 3.4e-18 65.7 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|385803251|ref|YP_005839651.1| - 4.5e-14 52.7 0.0 1.3e-13 51.2 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.26 gi|385803251|ref|YP_005839651.1| - 4.3e-11 42.5 0.0 2.4e-10 40.1 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|385803251|ref|YP_005839651.1| - 3.3e-07 30.3 0.0 7.1e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit RNase_H_2 PF13482.1 gi|385803252|ref|YP_005839652.1| - 2.5e-34 118.4 0.0 3.3e-34 118.0 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily HHH_5 PF14520.1 gi|385803252|ref|YP_005839652.1| - 8.4e-08 32.2 0.0 2.1e-07 31.0 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|385803252|ref|YP_005839652.1| - 0.00029 20.6 0.0 0.00063 19.5 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif DNA_pol_B_exo2 PF10108.4 gi|385803252|ref|YP_005839652.1| - 0.012 15.1 0.0 0.053 13.0 0.0 2.0 1 1 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB HHH PF00633.18 gi|385803252|ref|YP_005839652.1| - 0.013 15.1 0.0 0.45 10.3 0.0 3.2 3 0 0 3 3 3 0 Helix-hairpin-helix motif Myosin_tail_1 PF01576.14 gi|385803254|ref|YP_005839654.1| - 0.0099 13.6 1.4 0.015 13.0 0.9 1.2 1 0 0 1 1 1 1 Myosin tail DUF1949 PF09186.6 gi|385803254|ref|YP_005839654.1| - 0.055 13.0 0.2 0.15 11.6 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1949) ASC PF00858.19 gi|385803254|ref|YP_005839654.1| - 0.12 10.9 0.0 0.17 10.4 0.0 1.1 1 0 0 1 1 1 0 Amiloride-sensitive sodium channel Trypsin_2 PF13365.1 gi|385803255|ref|YP_005839655.1| - 6.7e-17 61.5 0.5 1.2e-16 60.7 0.3 1.5 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.1 gi|385803255|ref|YP_005839655.1| - 7.4e-16 57.8 0.3 1.9e-15 56.5 0.2 1.7 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.21 gi|385803255|ref|YP_005839655.1| - 3e-12 46.6 0.2 7.1e-12 45.3 0.1 1.6 1 1 0 1 1 1 1 Trypsin DUF533 PF04391.7 gi|385803255|ref|YP_005839655.1| - 0.02 14.2 0.3 0.47 9.8 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF533) Tricorn_PDZ PF14685.1 gi|385803255|ref|YP_005839655.1| - 0.079 12.7 0.2 0.4 10.4 0.1 2.2 2 0 0 2 2 2 0 Tricorn protease PDZ domain Peptidase_S3 PF00944.14 gi|385803255|ref|YP_005839655.1| - 0.1 11.9 0.3 0.2 11.0 0.2 1.4 1 0 0 1 1 1 0 Alphavirus core protein GCV_T PF01571.16 gi|385803256|ref|YP_005839656.1| - 2.6e-40 138.0 0.0 4.2e-40 137.3 0.0 1.3 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|385803256|ref|YP_005839656.1| - 2.4e-08 33.8 0.0 4.6e-08 32.9 0.0 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain UNC-50 PF05216.8 gi|385803257|ref|YP_005839657.1| - 0.013 14.7 2.1 0.014 14.6 1.5 1.0 1 0 0 1 1 1 0 UNC-50 family DUF1469 PF07332.6 gi|385803257|ref|YP_005839657.1| - 0.068 12.9 3.8 0.082 12.6 2.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Polysacc_synt_3 PF13440.1 gi|385803257|ref|YP_005839657.1| - 0.088 12.2 6.9 0.15 11.5 4.9 1.3 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein FUSC_2 PF13515.1 gi|385803257|ref|YP_005839657.1| - 0.13 12.1 7.0 0.17 11.7 4.8 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein-like DUF4231 PF14015.1 gi|385803257|ref|YP_005839657.1| - 6.8 6.7 7.1 8.7 6.3 4.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) HTH_10 PF04967.7 gi|385803258|ref|YP_005839658.1| - 1.1e-16 60.1 0.0 1.7e-16 59.5 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|385803258|ref|YP_005839658.1| - 7.1e-05 22.0 0.0 0.00013 21.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|385803258|ref|YP_005839658.1| - 0.0046 16.5 0.0 0.0094 15.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|385803258|ref|YP_005839658.1| - 0.037 13.5 0.2 0.071 12.6 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain UPF0122 PF04297.9 gi|385803258|ref|YP_005839658.1| - 0.046 13.7 0.0 0.099 12.6 0.0 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like DDE_Tnp_1_4 PF13701.1 gi|385803258|ref|YP_005839658.1| - 0.071 11.2 0.0 0.087 10.9 0.0 1.1 1 0 0 1 1 1 0 Transposase DDE domain group 1 HTH_24 PF13412.1 gi|385803258|ref|YP_005839658.1| - 0.071 12.5 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|385803258|ref|YP_005839658.1| - 0.099 12.1 0.0 0.3 10.5 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 Aminotran_5 PF00266.14 gi|385803259|ref|YP_005839659.1| - 7.5e-59 199.3 0.0 8.8e-59 199.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V HTH_10 PF04967.7 gi|385803260|ref|YP_005839660.1| - 4.6e-19 67.7 0.1 7.8e-19 67.0 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|385803260|ref|YP_005839660.1| - 0.049 12.9 0.0 0.12 11.7 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 DUF2493 PF10686.4 gi|385803260|ref|YP_005839660.1| - 0.094 12.2 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2493) BCD PF15461.1 gi|385803261|ref|YP_005839661.1| - 3.4e-67 226.5 20.4 4.8e-67 226.1 14.1 1.2 1 0 0 1 1 1 1 Beta-carotene 15,15'-dioxygenase CSD PF00313.17 gi|385803263|ref|YP_005839663.1| - 7.7e-21 73.6 0.2 8.5e-21 73.5 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|385803263|ref|YP_005839663.1| - 0.01 15.5 0.9 0.015 15.0 0.6 1.3 1 1 0 1 1 1 0 S1-like CusF_Ec PF11604.3 gi|385803263|ref|YP_005839663.1| - 0.012 15.3 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF OB_RNB PF08206.6 gi|385803263|ref|YP_005839663.1| - 0.03 13.8 1.2 0.044 13.2 0.9 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain TFIIB PF00382.14 gi|385803264|ref|YP_005839664.1| - 4.1e-45 151.4 1.1 7.3e-23 80.1 0.1 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|385803264|ref|YP_005839664.1| - 5e-18 64.1 1.4 8.1e-18 63.4 1.0 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|385803264|ref|YP_005839664.1| - 0.0034 16.8 2.8 0.03 13.7 1.9 2.2 1 1 1 2 2 2 1 A2L zinc ribbon domain HTH_23 PF13384.1 gi|385803264|ref|YP_005839664.1| - 0.01 15.4 0.3 0.59 9.8 0.0 3.3 3 0 0 3 3 3 0 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|385803264|ref|YP_005839664.1| - 0.014 14.7 0.8 0.3 10.4 0.0 3.3 3 1 0 3 3 3 0 Sigma-70, region 4 Ribosomal_S27e PF01667.12 gi|385803264|ref|YP_005839664.1| - 0.02 14.4 0.2 0.04 13.4 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 RRN7 PF11781.3 gi|385803264|ref|YP_005839664.1| - 0.061 12.8 0.5 0.11 11.9 0.3 1.5 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 Trm112p PF03966.11 gi|385803264|ref|YP_005839664.1| - 0.071 13.4 1.2 0.34 11.3 0.8 2.2 1 1 0 1 1 1 0 Trm112p-like protein Cyclin_N PF00134.18 gi|385803264|ref|YP_005839664.1| - 0.078 12.5 0.0 0.28 10.7 0.0 1.9 2 0 0 2 2 2 0 Cyclin, N-terminal domain OrfB_Zn_ribbon PF07282.6 gi|385803264|ref|YP_005839664.1| - 0.082 12.5 0.5 0.24 11.0 0.4 1.8 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Cyclin_C PF02984.14 gi|385803264|ref|YP_005839664.1| - 0.085 12.7 0.0 0.5 10.3 0.0 2.0 2 0 0 2 2 2 0 Cyclin, C-terminal domain Elf1 PF05129.8 gi|385803264|ref|YP_005839664.1| - 0.1 12.3 0.2 0.26 11.0 0.1 1.6 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|385803264|ref|YP_005839664.1| - 0.11 12.8 0.4 0.27 11.5 0.3 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-RING_3 PF14369.1 gi|385803264|ref|YP_005839664.1| - 1.3 9.1 3.9 1.3 9.0 0.3 2.3 1 1 1 2 2 2 0 zinc-finger Zn-ribbon_8 PF09723.5 gi|385803264|ref|YP_005839664.1| - 1.6 8.7 3.8 6.7 6.7 0.6 2.5 1 1 0 2 2 2 0 Zinc ribbon domain Methyltransf_26 PF13659.1 gi|385803265|ref|YP_005839665.1| - 1.6e-14 53.9 0.0 2.1e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|385803265|ref|YP_005839665.1| - 1.4e-12 47.5 0.0 2.2e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|385803265|ref|YP_005839665.1| - 3e-11 42.9 0.1 5e-11 42.2 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|385803265|ref|YP_005839665.1| - 2.2e-10 40.1 0.2 3.2e-10 39.6 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.1 gi|385803265|ref|YP_005839665.1| - 1.6e-08 34.2 0.0 4.4e-08 32.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|385803265|ref|YP_005839665.1| - 6.8e-08 32.7 0.0 1.4e-07 31.7 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385803265|ref|YP_005839665.1| - 2.3e-07 31.3 0.0 3.4e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|385803265|ref|YP_005839665.1| - 2.8e-07 30.1 0.0 3.7e-07 29.7 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.7 gi|385803265|ref|YP_005839665.1| - 4.9e-06 26.9 0.0 1e-05 25.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|385803265|ref|YP_005839665.1| - 1.5e-05 24.6 0.0 2.1e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Ubie_methyltran PF01209.13 gi|385803265|ref|YP_005839665.1| - 3.2e-05 23.1 0.0 5.1e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family RrnaAD PF00398.15 gi|385803265|ref|YP_005839665.1| - 0.00013 21.0 0.0 0.00019 20.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_3 PF01596.12 gi|385803265|ref|YP_005839665.1| - 0.00025 20.1 0.1 0.00037 19.5 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_32 PF13679.1 gi|385803265|ref|YP_005839665.1| - 0.00071 19.2 0.0 0.001 18.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|385803265|ref|YP_005839665.1| - 0.0019 17.3 0.0 0.0027 16.8 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_23 PF13489.1 gi|385803265|ref|YP_005839665.1| - 0.0033 17.1 0.0 0.0059 16.3 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|385803265|ref|YP_005839665.1| - 0.028 13.9 0.0 0.038 13.5 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_12 PF08242.7 gi|385803265|ref|YP_005839665.1| - 0.053 13.9 0.0 0.11 12.9 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain DOT1 PF08123.8 gi|385803265|ref|YP_005839665.1| - 0.075 12.3 0.0 0.12 11.6 0.0 1.4 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_4 PF02390.12 gi|385803265|ref|YP_005839665.1| - 0.099 11.6 0.0 0.1 11.6 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Rhomboid PF01694.17 gi|385803266|ref|YP_005839666.1| - 0.00065 19.7 17.3 0.00065 19.7 12.0 3.2 2 1 0 2 2 2 1 Rhomboid family UPF0058 PF01893.11 gi|385803267|ref|YP_005839667.1| - 9.7e-35 118.5 0.6 1.1e-34 118.3 0.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Chorismate_bind PF00425.13 gi|385803269|ref|YP_005839669.1| - 4.4e-71 239.2 0.0 6e-71 238.7 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme ACP PF06857.6 gi|385803269|ref|YP_005839669.1| - 0.079 12.8 0.0 0.21 11.4 0.0 1.8 1 0 0 1 1 1 0 Malonate decarboxylase delta subunit (MdcD) TPP_enzyme_N PF02776.13 gi|385803270|ref|YP_005839670.1| - 3.6e-31 107.9 0.1 1.3e-30 106.1 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|385803270|ref|YP_005839670.1| - 6.1e-08 32.3 0.0 1.7e-07 30.9 0.0 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|385803270|ref|YP_005839670.1| - 0.00071 19.3 0.0 0.0014 18.3 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain ECH PF00378.15 gi|385803271|ref|YP_005839671.1| - 3.4e-43 147.5 0.0 2.1e-42 144.9 0.0 1.8 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family UbiA PF01040.13 gi|385803272|ref|YP_005839672.1| - 1.2e-36 126.3 25.5 1.4e-36 126.0 17.6 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family PRA1 PF03208.14 gi|385803272|ref|YP_005839672.1| - 0.56 9.5 7.4 0.15 11.3 1.0 2.5 2 1 0 2 2 2 0 PRA1 family protein MR_MLE PF01188.16 gi|385803273|ref|YP_005839673.1| - 1.3e-16 60.8 0.5 5.7e-16 58.8 0.2 2.1 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|385803273|ref|YP_005839673.1| - 4e-14 52.5 0.5 4e-14 52.5 0.3 2.2 3 0 0 3 3 3 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|385803273|ref|YP_005839673.1| - 3.9e-05 23.6 0.0 9.2e-05 22.4 0.0 1.7 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Jiraiya PF15038.1 gi|385803274|ref|YP_005839674.1| - 0.094 12.1 0.4 0.098 12.0 0.2 1.0 1 0 0 1 1 1 0 Jiraiya PSII_Ycf12 PF05969.6 gi|385803274|ref|YP_005839674.1| - 0.79 9.3 4.9 0.94 9.1 3.4 1.1 1 0 0 1 1 1 0 Photosystem II complex subunit Ycf12 PyrI PF01948.13 gi|385803276|ref|YP_005839676.1| - 2.8e-36 123.4 0.9 3.8e-36 123.0 0.6 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|385803276|ref|YP_005839676.1| - 7.3e-17 60.5 0.6 1.2e-16 59.8 0.4 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.16 gi|385803277|ref|YP_005839677.1| - 7.6e-46 155.2 0.0 2e-45 153.9 0.0 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|385803277|ref|YP_005839677.1| - 3e-36 124.6 0.0 4.2e-36 124.2 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ELFV_dehydrog PF00208.16 gi|385803278|ref|YP_005839678.1| - 1.8e-71 240.5 0.4 2.2e-71 240.2 0.3 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|385803278|ref|YP_005839678.1| - 5e-50 168.4 0.0 7.9e-50 167.8 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|385803278|ref|YP_005839678.1| - 0.0042 16.2 0.1 0.0088 15.2 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|385803278|ref|YP_005839678.1| - 0.029 13.9 0.1 0.055 13.0 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain IlvN PF07991.7 gi|385803278|ref|YP_005839678.1| - 0.043 13.1 0.1 0.073 12.4 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Malic_M PF03949.10 gi|385803278|ref|YP_005839678.1| - 0.052 13.0 0.2 0.076 12.5 0.1 1.3 1 0 0 1 1 1 0 Malic enzyme, NAD binding domain FBPase PF00316.15 gi|385803279|ref|YP_005839679.1| - 1.6e-61 207.9 0.0 1.9e-61 207.6 0.0 1.0 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase Inositol_P PF00459.20 gi|385803279|ref|YP_005839679.1| - 0.0059 15.9 0.0 0.012 14.9 0.0 1.4 1 1 0 1 1 1 1 Inositol monophosphatase family HRDC PF00570.18 gi|385803280|ref|YP_005839680.1| - 0.0026 17.4 0.1 0.61 9.8 0.0 2.3 2 0 0 2 2 2 1 HRDC domain Rab5-bind PF09311.6 gi|385803280|ref|YP_005839680.1| - 0.0026 17.6 6.5 0.0031 17.4 4.5 1.0 1 0 0 1 1 1 1 Rabaptin-like protein HR1 PF02185.11 gi|385803280|ref|YP_005839680.1| - 0.0028 17.3 0.2 0.0069 16.1 0.1 1.7 1 0 0 1 1 1 1 Hr1 repeat DegS PF05384.6 gi|385803280|ref|YP_005839680.1| - 0.0041 16.3 2.1 0.005 16.0 1.5 1.2 1 0 0 1 1 1 1 Sensor protein DegS Filament PF00038.16 gi|385803280|ref|YP_005839680.1| - 0.0045 16.4 2.9 0.0052 16.3 2.0 1.1 1 0 0 1 1 1 1 Intermediate filament protein MCPsignal PF00015.16 gi|385803280|ref|YP_005839680.1| - 0.0081 15.7 5.3 0.0095 15.5 3.7 1.2 1 1 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Cep57_CLD_2 PF14197.1 gi|385803280|ref|YP_005839680.1| - 0.017 15.0 0.9 0.026 14.4 0.6 1.3 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 BLOC1_2 PF10046.4 gi|385803280|ref|YP_005839680.1| - 0.021 14.9 2.1 0.025 14.7 1.1 1.5 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4201 PF13870.1 gi|385803280|ref|YP_005839680.1| - 0.03 13.7 1.0 0.042 13.2 0.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) DUF1664 PF07889.7 gi|385803280|ref|YP_005839680.1| - 0.032 14.0 0.9 0.042 13.6 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF2730 PF10805.3 gi|385803280|ref|YP_005839680.1| - 0.037 13.7 0.7 0.056 13.1 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) RmuC PF02646.11 gi|385803280|ref|YP_005839680.1| - 0.04 12.7 1.2 0.046 12.5 0.8 1.1 1 0 0 1 1 1 0 RmuC family RP-C_C PF11800.3 gi|385803280|ref|YP_005839680.1| - 0.057 13.1 4.3 0.065 12.9 3.0 1.1 1 0 0 1 1 1 0 Replication protein C C-terminal region Laminin_II PF06009.7 gi|385803280|ref|YP_005839680.1| - 0.058 13.1 3.4 0.11 12.3 2.4 1.6 1 1 0 1 1 1 0 Laminin Domain II DUF972 PF06156.8 gi|385803280|ref|YP_005839680.1| - 0.06 13.6 4.6 0.1 12.9 3.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF972) DUF3829 PF12889.2 gi|385803280|ref|YP_005839680.1| - 0.07 12.3 2.1 0.09 11.9 1.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3829) AATF-Che1 PF13339.1 gi|385803280|ref|YP_005839680.1| - 0.075 13.1 3.3 0.11 12.6 2.3 1.4 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor CHASE3 PF05227.8 gi|385803280|ref|YP_005839680.1| - 0.079 12.6 4.6 0.11 12.1 3.2 1.3 1 0 0 1 1 1 0 CHASE3 domain YPEB PF14620.1 gi|385803280|ref|YP_005839680.1| - 0.089 11.7 1.5 0.098 11.6 1.0 1.1 1 0 0 1 1 1 0 YpeB sporulation EAP30 PF04157.11 gi|385803280|ref|YP_005839680.1| - 0.089 11.9 1.2 0.11 11.6 0.8 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family DASH_Dad2 PF08654.5 gi|385803280|ref|YP_005839680.1| - 0.11 12.4 4.1 0.44 10.5 2.8 2.1 1 1 0 1 1 1 0 DASH complex subunit Dad2 DUF1598 PF07643.6 gi|385803280|ref|YP_005839680.1| - 0.11 12.4 0.3 0.17 11.9 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1598) eIF3_N PF09440.5 gi|385803280|ref|YP_005839680.1| - 0.12 12.5 2.8 0.13 12.4 1.9 1.2 1 0 0 1 1 1 0 eIF3 subunit 6 N terminal domain DUF1098 PF06497.6 gi|385803280|ref|YP_005839680.1| - 0.13 12.3 0.7 0.18 11.8 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1098) NPV_P10 PF05531.7 gi|385803280|ref|YP_005839680.1| - 0.14 12.4 1.5 0.22 11.8 1.1 1.4 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Spc24 PF08286.6 gi|385803280|ref|YP_005839680.1| - 0.15 11.7 4.8 0.26 10.9 3.3 1.6 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 Spc7 PF08317.6 gi|385803280|ref|YP_005839680.1| - 0.16 10.6 3.8 0.18 10.4 2.6 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein T2SM PF04612.7 gi|385803280|ref|YP_005839680.1| - 0.16 11.7 1.6 0.2 11.4 1.1 1.1 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M Reo_sigmaC PF04582.7 gi|385803280|ref|YP_005839680.1| - 0.17 11.0 1.3 0.17 11.0 0.9 1.1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein IncA PF04156.9 gi|385803280|ref|YP_005839680.1| - 0.18 11.3 3.3 0.17 11.4 1.9 1.3 1 1 0 1 1 1 0 IncA protein FlaC_arch PF05377.6 gi|385803280|ref|YP_005839680.1| - 0.18 11.7 2.7 2.7 7.9 0.4 2.2 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) HTH_37 PF13744.1 gi|385803280|ref|YP_005839680.1| - 0.2 11.5 1.7 0.24 11.2 0.7 1.5 1 1 1 2 2 2 0 Helix-turn-helix domain DUF948 PF06103.6 gi|385803280|ref|YP_005839680.1| - 0.2 11.5 2.1 0.45 10.3 1.4 1.6 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Syntaxin-6_N PF09177.6 gi|385803280|ref|YP_005839680.1| - 0.23 11.9 3.0 0.27 11.6 1.9 1.3 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Med9 PF07544.8 gi|385803280|ref|YP_005839680.1| - 0.23 11.2 2.0 0.33 10.7 0.9 1.7 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Prominin PF05478.6 gi|385803280|ref|YP_005839680.1| - 0.25 8.8 1.1 0.26 8.8 0.8 1.0 1 0 0 1 1 1 0 Prominin CASP_C PF08172.7 gi|385803280|ref|YP_005839680.1| - 0.3 10.0 3.2 0.4 9.6 2.2 1.1 1 0 0 1 1 1 0 CASP C terminal Mnd1 PF03962.10 gi|385803280|ref|YP_005839680.1| - 0.31 10.6 4.5 0.36 10.4 3.1 1.1 1 0 0 1 1 1 0 Mnd1 family Atg14 PF10186.4 gi|385803280|ref|YP_005839680.1| - 0.31 9.9 1.6 0.33 9.8 1.1 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 CENP-F_leu_zip PF10473.4 gi|385803280|ref|YP_005839680.1| - 0.35 10.7 7.9 0.5 10.2 5.5 1.3 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FlgN PF05130.7 gi|385803280|ref|YP_005839680.1| - 0.36 11.0 5.6 0.55 10.4 3.9 1.3 1 1 0 1 1 1 0 FlgN protein DUF4404 PF14357.1 gi|385803280|ref|YP_005839680.1| - 0.4 11.1 4.5 0.38 11.2 1.9 1.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4404) zf-C4H2 PF10146.4 gi|385803280|ref|YP_005839680.1| - 0.49 10.3 4.6 0.67 9.9 3.2 1.4 1 1 0 1 1 1 0 Zinc finger-containing protein DUF2203 PF09969.4 gi|385803280|ref|YP_005839680.1| - 0.53 10.5 3.4 0.72 10.0 2.1 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) Halo_GVPC PF05465.8 gi|385803280|ref|YP_005839680.1| - 0.54 10.2 4.0 4.7 7.2 0.1 2.6 3 0 0 3 3 2 0 Halobacterial gas vesicle protein C (GVPC) repeat V_ATPase_I PF01496.14 gi|385803280|ref|YP_005839680.1| - 0.61 7.8 2.3 0.67 7.7 1.6 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF2067 PF09840.4 gi|385803280|ref|YP_005839680.1| - 0.7 9.3 5.3 4.8 6.6 0.1 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2067) TMF_TATA_bd PF12325.3 gi|385803280|ref|YP_005839680.1| - 0.84 9.3 8.0 2.1 8.1 1.2 1.9 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding HAUS6_N PF14661.1 gi|385803280|ref|YP_005839680.1| - 1 8.6 3.6 1.5 8.0 2.5 1.3 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus TMF_DNA_bd PF12329.3 gi|385803280|ref|YP_005839680.1| - 1.1 9.0 7.5 0.89 9.4 2.2 2.6 1 1 2 3 3 3 0 TATA element modulatory factor 1 DNA binding APG6 PF04111.7 gi|385803280|ref|YP_005839680.1| - 1.2 8.0 6.5 1.4 7.8 4.5 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF2802 PF10975.3 gi|385803280|ref|YP_005839680.1| - 1.6 8.5 4.5 17 5.2 3.1 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2802) DivIVA PF05103.8 gi|385803280|ref|YP_005839680.1| - 2.2 8.3 9.3 4.3 7.4 6.4 1.5 1 1 0 1 1 1 0 DivIVA protein HisKA PF00512.20 gi|385803280|ref|YP_005839680.1| - 3.1 7.8 5.4 13 5.9 2.4 2.6 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain Sigma70_ner PF04546.8 gi|385803280|ref|YP_005839680.1| - 5.8 6.4 11.1 0.4 10.2 0.4 2.0 1 1 1 2 2 2 0 Sigma-70, non-essential region CoA_binding_2 PF13380.1 gi|385803281|ref|YP_005839681.1| - 1.4e-31 109.0 0.1 1.7e-31 108.7 0.0 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|385803281|ref|YP_005839681.1| - 0.00022 21.6 0.0 0.00041 20.8 0.0 1.3 1 0 0 1 1 1 1 CoA binding domain UbiA PF01040.13 gi|385803282|ref|YP_005839682.1| - 7.5e-39 133.4 23.0 9.4e-39 133.1 16.0 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF1422 PF07226.6 gi|385803282|ref|YP_005839682.1| - 6.2 6.5 9.8 0.4 10.4 1.4 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1422) FKBP_C PF00254.23 gi|385803283|ref|YP_005839683.1| - 1.1e-19 70.1 0.1 1.6e-19 69.6 0.1 1.3 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Toxin_62 PF15540.1 gi|385803283|ref|YP_005839683.1| - 0.11 12.6 0.6 7.4 6.7 0.1 2.1 1 1 0 2 2 2 0 Putative toxin 62 YajC PF02699.10 gi|385803283|ref|YP_005839683.1| - 0.15 11.7 0.8 0.4 10.3 0.3 1.9 2 0 0 2 2 2 0 Preprotein translocase subunit HTH_12 PF08461.5 gi|385803284|ref|YP_005839684.1| - 0.0013 18.4 0.0 0.0024 17.5 0.0 1.6 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_24 PF13412.1 gi|385803284|ref|YP_005839684.1| - 0.0025 17.1 0.1 0.0039 16.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MotA_activ PF09114.5 gi|385803284|ref|YP_005839684.1| - 0.035 13.8 0.1 0.041 13.6 0.1 1.1 1 0 0 1 1 1 0 Transcription factor MotA, activation domain Phage_rep_org_N PF09681.5 gi|385803284|ref|YP_005839684.1| - 0.05 13.1 0.1 0.083 12.4 0.0 1.5 1 1 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF2513 PF10711.4 gi|385803284|ref|YP_005839684.1| - 0.067 13.2 0.0 0.12 12.5 0.0 1.4 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) DUF2680 PF10925.3 gi|385803284|ref|YP_005839684.1| - 0.082 12.7 0.2 0.18 11.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2680) HTH_5 PF01022.15 gi|385803284|ref|YP_005839684.1| - 0.082 12.5 0.1 0.18 11.4 0.1 1.6 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family Matrilin_ccoil PF10393.4 gi|385803284|ref|YP_005839684.1| - 0.09 12.1 1.1 0.15 11.4 0.2 1.7 2 0 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin DUF977 PF06163.6 gi|385803284|ref|YP_005839684.1| - 0.12 12.0 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HHH PF00633.18 gi|385803285|ref|YP_005839685.1| - 0.0028 17.2 0.2 0.0083 15.7 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|385803285|ref|YP_005839685.1| - 0.012 15.7 0.1 0.21 11.7 0.0 2.3 1 1 0 1 1 1 0 Helix-hairpin-helix domain Transposase_20 PF02371.11 gi|385803285|ref|YP_005839685.1| - 0.033 14.2 0.0 0.055 13.5 0.0 1.3 1 0 0 1 1 1 0 Transposase IS116/IS110/IS902 family Methyltransf_3 PF01596.12 gi|385803285|ref|YP_005839685.1| - 0.11 11.4 0.0 0.16 11.0 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase zf-C2H2 PF00096.21 gi|385803292|ref|YP_005839692.1| - 0.021 15.1 1.1 0.052 13.9 0.1 2.1 1 1 1 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_6 PF13912.1 gi|385803292|ref|YP_005839692.1| - 0.024 14.5 0.3 0.044 13.6 0.2 1.5 1 0 0 1 1 1 0 C2H2-type zinc finger Antitoxin-MazE PF04014.13 gi|385803293|ref|YP_005839693.1| - 0.0008 19.0 0.2 0.0018 17.9 0.2 1.7 1 1 0 1 1 1 1 Antidote-toxin recognition MazE PIN PF01850.16 gi|385803294|ref|YP_005839694.1| - 0.099 12.9 0.7 0.13 12.6 0.5 1.3 1 0 0 1 1 1 0 PIN domain DUF3328 PF11807.3 gi|385803295|ref|YP_005839695.1| - 0.06 13.0 0.1 0.092 12.4 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3328) RskA PF10099.4 gi|385803295|ref|YP_005839695.1| - 0.086 12.5 0.0 0.12 12.1 0.0 1.1 1 0 0 1 1 1 0 Anti-sigma-K factor rskA PNP_UDP_1 PF01048.15 gi|385803296|ref|YP_005839696.1| - 3.2e-25 88.4 0.1 3.9e-25 88.1 0.1 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily Afaf PF15339.1 gi|385803297|ref|YP_005839697.1| - 0.058 12.9 0.0 0.089 12.3 0.0 1.3 1 0 0 1 1 1 0 Acrosome formation-associated factor DUF3988 PF13149.1 gi|385803297|ref|YP_005839697.1| - 0.064 12.7 0.0 0.077 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3988) TrmB PF01978.14 gi|385803298|ref|YP_005839698.1| - 0.00033 20.3 0.0 0.00042 19.9 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Frankia_peptide PF14407.1 gi|385803298|ref|YP_005839698.1| - 0.0018 18.0 0.3 0.0076 15.9 0.0 2.0 2 0 0 2 2 2 1 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. HTH_27 PF13463.1 gi|385803298|ref|YP_005839698.1| - 0.0034 17.6 0.0 0.0044 17.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|385803298|ref|YP_005839698.1| - 0.014 15.1 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|385803298|ref|YP_005839698.1| - 0.13 11.9 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 MarR family PadR PF03551.9 gi|385803298|ref|YP_005839698.1| - 0.15 11.8 0.0 0.91 9.3 0.0 1.9 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|385803300|ref|YP_005839700.1| - 1.6e-12 46.9 0.1 4.4e-12 45.5 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|385803300|ref|YP_005839700.1| - 3.5e-08 33.1 0.0 6.9e-08 32.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|385803300|ref|YP_005839700.1| - 2.2e-06 27.2 0.0 8.6e-06 25.3 0.0 2.1 2 1 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|385803300|ref|YP_005839700.1| - 4.1e-06 26.2 0.0 1.1e-05 24.8 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|385803300|ref|YP_005839700.1| - 3.5e-05 23.3 0.0 8e-05 22.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|385803300|ref|YP_005839700.1| - 4e-05 22.9 0.0 0.00013 21.2 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|385803300|ref|YP_005839700.1| - 0.00022 20.8 0.0 0.00051 19.6 0.0 1.6 1 1 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|385803300|ref|YP_005839700.1| - 0.0021 18.3 0.0 0.0048 17.1 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|385803300|ref|YP_005839700.1| - 0.0034 16.9 0.0 0.0069 16.0 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_29 PF13551.1 gi|385803300|ref|YP_005839700.1| - 0.0088 16.1 0.0 0.023 14.8 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.1 gi|385803300|ref|YP_005839700.1| - 0.0099 15.8 0.0 0.043 13.8 0.0 2.0 2 1 0 2 2 2 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|385803300|ref|YP_005839700.1| - 0.015 15.4 0.0 0.028 14.5 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_DeoR PF08220.7 gi|385803300|ref|YP_005839700.1| - 0.023 14.1 0.0 0.05 13.1 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_39 PF14090.1 gi|385803300|ref|YP_005839700.1| - 0.027 13.9 0.0 0.066 12.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.9 gi|385803300|ref|YP_005839700.1| - 0.031 14.0 0.0 0.061 13.1 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family FaeA PF04703.7 gi|385803300|ref|YP_005839700.1| - 0.097 12.8 0.0 0.2 11.8 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein Rrf2 PF02082.15 gi|385803300|ref|YP_005839700.1| - 0.1 12.7 0.0 0.36 10.9 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator TrmB PF01978.14 gi|385803303|ref|YP_005839703.1| - 3.5e-05 23.4 0.0 0.00017 21.2 0.0 2.1 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|385803303|ref|YP_005839703.1| - 9.1e-05 21.9 0.1 0.00025 20.5 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|385803303|ref|YP_005839703.1| - 0.00091 18.8 0.0 0.085 12.5 0.0 2.5 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.2 gi|385803303|ref|YP_005839703.1| - 0.0017 17.9 0.0 0.0064 16.1 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|385803303|ref|YP_005839703.1| - 0.0092 15.7 0.1 0.11 12.3 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|385803303|ref|YP_005839703.1| - 0.02 14.2 0.2 0.062 12.6 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF1764 PF08576.5 gi|385803303|ref|YP_005839703.1| - 0.032 15.0 0.3 0.049 14.4 0.2 1.6 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF1764) HTH_29 PF13551.1 gi|385803303|ref|YP_005839703.1| - 0.033 14.3 0.5 0.17 12.0 0.3 2.1 1 1 0 1 1 1 0 Winged helix-turn helix HTH_6 PF01418.12 gi|385803303|ref|YP_005839703.1| - 0.046 13.4 0.0 0.24 11.1 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family WYL PF13280.1 gi|385803303|ref|YP_005839703.1| - 0.068 13.0 0.4 0.67 9.8 0.2 2.0 1 1 0 1 1 1 0 WYL domain Fe_dep_repress PF01325.14 gi|385803303|ref|YP_005839703.1| - 0.086 12.7 0.0 2.5 8.1 0.0 2.2 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain TBPIP PF07106.8 gi|385803303|ref|YP_005839703.1| - 0.12 11.9 0.3 0.22 11.0 0.2 1.5 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF1192 PF06698.6 gi|385803303|ref|YP_005839703.1| - 0.44 10.3 4.5 6.2 6.7 0.1 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1192) TrmB PF01978.14 gi|385803304|ref|YP_005839704.1| - 9.5e-11 41.2 0.4 3.4e-10 39.4 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|385803304|ref|YP_005839704.1| - 7e-07 28.9 0.2 1.9e-06 27.5 0.0 1.9 2 1 1 3 3 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|385803304|ref|YP_005839704.1| - 1.9e-05 23.9 0.0 0.00012 21.3 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|385803304|ref|YP_005839704.1| - 2.7e-05 23.7 0.0 7.3e-05 22.3 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family F-112 PF09645.5 gi|385803304|ref|YP_005839704.1| - 9.6e-05 22.2 0.0 0.2 11.5 0.0 2.2 2 0 0 2 2 2 2 F-112 protein MarR_2 PF12802.2 gi|385803304|ref|YP_005839704.1| - 0.0039 16.8 0.7 0.024 14.3 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|385803304|ref|YP_005839704.1| - 0.005 16.4 0.1 0.029 13.9 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain Penicillinase_R PF03965.11 gi|385803304|ref|YP_005839704.1| - 0.027 14.5 0.0 0.054 13.5 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_DeoR PF08220.7 gi|385803304|ref|YP_005839704.1| - 0.058 12.9 0.0 0.18 11.3 0.0 1.9 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain PadR PF03551.9 gi|385803304|ref|YP_005839704.1| - 0.073 12.8 0.0 0.25 11.1 0.0 2.0 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family FeoC PF09012.5 gi|385803304|ref|YP_005839704.1| - 0.073 12.7 0.0 0.98 9.1 0.0 2.1 2 0 0 2 2 2 0 FeoC like transcriptional regulator HTH_29 PF13551.1 gi|385803304|ref|YP_005839704.1| - 0.085 13.0 0.0 0.24 11.5 0.0 1.8 1 1 1 2 2 2 0 Winged helix-turn helix TFIIE_alpha PF02002.12 gi|385803304|ref|YP_005839704.1| - 0.088 12.3 0.1 0.68 9.4 0.0 2.1 1 1 0 2 2 2 0 TFIIE alpha subunit HTH_34 PF13601.1 gi|385803304|ref|YP_005839704.1| - 0.11 12.5 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|385803304|ref|YP_005839704.1| - 0.11 12.5 0.1 4.8 7.3 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator RP-C PF03428.8 gi|385803304|ref|YP_005839704.1| - 0.12 11.8 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain Amidohydro_5 PF13594.1 gi|385803304|ref|YP_005839704.1| - 0.99 9.2 3.5 2.3 8.1 2.4 1.6 1 1 0 1 1 1 0 Amidohydrolase Methyltransf_21 PF05050.7 gi|385803307|ref|YP_005839707.1| - 2.3e-25 89.4 0.0 2.9e-25 89.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|385803307|ref|YP_005839707.1| - 3.5e-06 27.5 0.0 4.4e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain V_cholerae_RfbT PF05575.6 gi|385803307|ref|YP_005839707.1| - 1.7e-05 24.0 0.0 2.2e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein Met_10 PF02475.11 gi|385803307|ref|YP_005839707.1| - 4.1e-05 23.2 0.1 8e-05 22.3 0.0 1.5 1 1 0 1 1 1 1 Met-10+ like-protein MTS PF05175.9 gi|385803307|ref|YP_005839707.1| - 0.0012 18.2 0.0 0.0022 17.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|385803307|ref|YP_005839707.1| - 0.0037 16.4 0.1 0.005 16.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|385803307|ref|YP_005839707.1| - 0.0069 15.7 0.0 0.038 13.3 0.0 1.9 1 1 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.1 gi|385803307|ref|YP_005839707.1| - 0.027 14.1 0.0 0.036 13.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_26 PF13659.1 gi|385803307|ref|YP_005839707.1| - 0.063 13.3 0.0 0.074 13.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385803307|ref|YP_005839707.1| - 0.063 12.8 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain NCKAP5 PF15246.1 gi|385803307|ref|YP_005839707.1| - 0.084 12.2 0.0 0.26 10.6 0.0 1.7 1 1 0 1 1 1 0 Nck-associated protein 5, Peripheral clock protein RrnaAD PF00398.15 gi|385803307|ref|YP_005839707.1| - 0.12 11.3 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase HicB PF05534.7 gi|385803309|ref|YP_005839709.1| - 0.0012 18.4 0.1 0.33 10.5 0.0 2.3 2 0 0 2 2 2 2 HicB family Tub_2 PF04525.7 gi|385803310|ref|YP_005839710.1| - 3.7e-08 32.9 1.2 6.7e-06 25.6 0.6 2.9 1 1 1 2 2 2 2 Tubby C 2 Scramblase PF03803.10 gi|385803310|ref|YP_005839710.1| - 0.062 12.3 0.1 5.3 6.0 0.0 2.5 1 1 0 2 2 2 0 Scramblase Glyco_hydro_31 PF01055.21 gi|385803311|ref|YP_005839711.1| - 2.3e-110 369.4 0.1 2.9e-110 369.1 0.1 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.1 gi|385803311|ref|YP_005839711.1| - 2e-14 53.1 0.0 4.5e-13 48.8 0.0 2.5 2 0 0 2 2 2 1 Galactose mutarotase-like SGL PF08450.7 gi|385803312|ref|YP_005839712.1| - 5.2e-07 29.2 1.4 0.0016 17.9 0.1 3.1 1 1 1 2 2 2 2 SMP-30/Gluconolaconase/LRE-like region Reg_prop PF07494.6 gi|385803312|ref|YP_005839712.1| - 0.013 15.4 0.1 2.5 8.4 0.0 4.1 4 0 0 4 4 4 0 Two component regulator propeller NHL PF01436.16 gi|385803312|ref|YP_005839712.1| - 0.17 11.8 11.7 30 4.8 0.0 5.6 6 0 0 6 6 6 0 NHL repeat DUF1902 PF08972.6 gi|385803312|ref|YP_005839712.1| - 0.18 11.3 0.8 0.46 10.0 0.6 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1902) Sensor PF13796.1 gi|385803313|ref|YP_005839713.1| - 1.7e-35 122.2 19.7 1.3e-34 119.4 10.2 1.6 1 1 1 2 2 2 2 Putative sensor DUF3487 PF11990.3 gi|385803313|ref|YP_005839713.1| - 4.5 6.6 11.0 0.64 9.4 0.9 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3487) PRA1 PF03208.14 gi|385803313|ref|YP_005839713.1| - 8.9 5.6 12.1 1.4 8.2 2.0 2.1 2 0 0 2 2 2 0 PRA1 family protein DUF2250 PF10007.4 gi|385803314|ref|YP_005839714.1| - 6.6e-62 205.4 3.8 9.3e-31 105.6 0.2 2.5 2 1 0 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2250) FbpA PF05833.6 gi|385803314|ref|YP_005839714.1| - 5.1e-06 25.2 1.7 3.7e-05 22.4 0.2 2.1 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) HTH_Crp_2 PF13545.1 gi|385803314|ref|YP_005839714.1| - 0.002 17.8 0.9 0.15 11.8 0.0 3.0 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain DUF4423 PF14394.1 gi|385803314|ref|YP_005839714.1| - 0.0038 16.7 0.0 0.3 10.6 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) HTH_27 PF13463.1 gi|385803314|ref|YP_005839714.1| - 0.03 14.6 0.7 0.85 9.9 0.1 3.0 2 1 0 2 2 2 0 Winged helix DNA-binding domain Phage_rep_org_N PF09681.5 gi|385803314|ref|YP_005839714.1| - 0.081 12.4 0.0 4.7 6.8 0.0 2.3 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) NapD PF03927.8 gi|385803314|ref|YP_005839714.1| - 0.097 12.5 0.0 0.24 11.2 0.0 1.7 1 0 0 1 1 1 0 NapD protein Usp PF00582.21 gi|385803315|ref|YP_005839715.1| - 1.6e-10 41.3 0.4 2.4e-10 40.7 0.3 1.3 1 1 0 1 1 1 1 Universal stress protein family Spermine_synth PF01564.12 gi|385803318|ref|YP_005839718.1| - 1.1e-16 60.5 0.0 1.7e-16 59.9 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_25 PF13649.1 gi|385803318|ref|YP_005839718.1| - 0.017 15.4 0.0 0.035 14.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|385803318|ref|YP_005839718.1| - 0.024 14.0 0.0 0.041 13.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|385803318|ref|YP_005839718.1| - 0.085 12.4 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385803318|ref|YP_005839718.1| - 0.13 12.8 0.0 0.23 12.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF2617 PF10936.3 gi|385803319|ref|YP_005839719.1| - 3.2e-05 23.5 0.2 7.8e-05 22.2 0.1 1.7 1 1 0 1 1 1 1 Protein of unknown function DUF2617 CmcI PF04989.7 gi|385803319|ref|YP_005839719.1| - 0.033 13.4 0.2 0.054 12.8 0.0 1.4 2 0 0 2 2 2 0 Cephalosporin hydroxylase Pentapeptide_3 PF13576.1 gi|385803320|ref|YP_005839720.1| - 2.4e-28 97.7 96.9 2.7e-07 30.3 9.9 11.1 4 2 4 11 11 11 9 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.11 gi|385803320|ref|YP_005839720.1| - 1.4e-05 24.6 6.3 1.4e-05 24.6 4.3 2.2 2 0 0 2 2 2 1 Ion channel DUF3672 PF12421.3 gi|385803320|ref|YP_005839720.1| - 3.3 7.8 5.4 0.96 9.5 0.0 2.7 3 0 0 3 3 3 0 Fibronectin type III protein DUF3060 PF11259.3 gi|385803321|ref|YP_005839721.1| - 4.9e-05 22.8 0.8 0.0003 20.3 0.1 2.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3060) DZR PF12773.2 gi|385803321|ref|YP_005839721.1| - 0.05 13.4 0.2 0.1 12.4 0.2 1.5 1 0 0 1 1 1 0 Double zinc ribbon FdhE PF04216.7 gi|385803321|ref|YP_005839721.1| - 0.13 11.9 0.0 0.17 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-ribbon_3 PF13248.1 gi|385803321|ref|YP_005839721.1| - 0.17 11.1 0.3 0.17 11.1 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|385803321|ref|YP_005839721.1| - 0.17 11.3 1.1 0.45 10.0 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.6 gi|385803321|ref|YP_005839721.1| - 0.32 11.1 6.4 6.6 6.9 1.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Ogr_Delta PF04606.7 gi|385803321|ref|YP_005839721.1| - 0.41 10.3 3.2 1.6 8.4 2.2 1.9 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger Sporozoite_P67 PF05642.6 gi|385803322|ref|YP_005839722.1| - 0.013 13.4 0.8 0.013 13.3 0.6 1.0 1 0 0 1 1 1 0 Sporozoite P67 surface antigen DUF4396 PF14342.1 gi|385803322|ref|YP_005839722.1| - 2.7 8.0 7.2 4.4 7.4 1.9 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4396) Gly-zipper_Omp PF13488.1 gi|385803322|ref|YP_005839722.1| - 5.2 6.7 18.6 0.18 11.4 5.9 2.9 3 0 0 3 3 3 0 Glycine zipper Viral_NABP PF05515.6 gi|385803323|ref|YP_005839723.1| - 0.65 10.2 4.7 1.2 9.4 3.2 1.4 1 0 0 1 1 1 0 Viral nucleic acid binding PMSR PF01625.16 gi|385803326|ref|YP_005839726.1| - 1.6e-36 125.5 0.0 2.1e-36 125.1 0.0 1.2 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase SelR PF01641.13 gi|385803327|ref|YP_005839727.1| - 4.6e-47 158.7 0.1 5.2e-47 158.5 0.1 1.0 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.9 gi|385803327|ref|YP_005839727.1| - 0.0081 16.1 0.1 0.018 15.0 0.1 1.6 1 1 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly DUF2296 PF10058.4 gi|385803327|ref|YP_005839727.1| - 0.022 14.5 0.1 0.45 10.3 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) HNH_5 PF14279.1 gi|385803327|ref|YP_005839727.1| - 0.024 14.6 0.9 0.095 12.7 0.1 2.0 2 0 0 2 2 2 0 HNH endonuclease Cytochrome_C554 PF13435.1 gi|385803327|ref|YP_005839727.1| - 0.054 13.5 0.2 0.099 12.6 0.1 1.5 1 1 0 1 1 1 0 Cytochrome c554 and c-prime Endonuclease_7 PF02945.10 gi|385803327|ref|YP_005839727.1| - 0.093 12.4 0.3 0.47 10.1 0.1 1.9 2 0 0 2 2 2 0 Recombination endonuclease VII CutA1 PF03091.10 gi|385803328|ref|YP_005839728.1| - 1.1e-25 89.2 0.2 1.2e-25 89.1 0.1 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein PAS_9 PF13426.1 gi|385803329|ref|YP_005839729.1| - 1.3e-15 57.6 0.0 1.5e-15 57.4 0.0 1.1 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|385803329|ref|YP_005839729.1| - 1.9e-07 30.8 0.0 3.1e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.6 gi|385803329|ref|YP_005839729.1| - 2.4e-06 27.5 0.3 3.7e-06 26.9 0.0 1.4 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|385803329|ref|YP_005839729.1| - 1.2e-05 24.9 0.0 1.8e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|385803329|ref|YP_005839729.1| - 0.12 12.4 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 PAS fold Peptidase_S15 PF02129.13 gi|385803330|ref|YP_005839730.1| - 4.8e-50 170.5 0.5 7e-50 169.9 0.3 1.3 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) PepX_C PF08530.5 gi|385803330|ref|YP_005839730.1| - 6.9e-45 153.6 0.4 1.2e-44 152.8 0.3 1.4 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Abhydrolase_6 PF12697.2 gi|385803330|ref|YP_005839730.1| - 2.2e-06 27.7 0.6 4.1e-06 26.8 0.4 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|385803330|ref|YP_005839730.1| - 3.8e-06 26.2 0.5 8.7e-06 25.1 0.3 1.5 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|385803330|ref|YP_005839730.1| - 5.3e-05 23.0 0.0 0.00012 21.9 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Beta_helix PF13229.1 gi|385803330|ref|YP_005839730.1| - 0.099 12.3 0.2 0.22 11.2 0.2 1.5 1 0 0 1 1 1 0 Right handed beta helix region Xan_ur_permease PF00860.15 gi|385803331|ref|YP_005839731.1| - 6.8e-74 248.6 48.1 1.4e-73 247.6 33.4 1.5 1 1 0 1 1 1 1 Permease family RhaA PF06134.6 gi|385803332|ref|YP_005839732.1| - 0.12 11.2 0.0 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 L-rhamnose isomerase (RhaA) Amidohydro_4 PF13147.1 gi|385803333|ref|YP_005839733.1| - 2.5e-27 96.5 0.0 8.4e-27 94.9 0.0 1.8 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|385803333|ref|YP_005839733.1| - 9.3e-15 54.2 0.1 2.4e-14 52.8 0.1 1.8 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|385803333|ref|YP_005839733.1| - 1.9e-10 40.9 0.1 0.00028 20.6 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_3 PF07969.6 gi|385803333|ref|YP_005839733.1| - 8.7e-06 25.2 0.0 0.013 14.7 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family IclR PF01614.13 gi|385803334|ref|YP_005839734.1| - 3.8e-30 104.2 0.0 6.4e-30 103.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|385803334|ref|YP_005839734.1| - 1.1e-10 40.8 0.1 6.4e-10 38.4 0.0 2.4 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|385803334|ref|YP_005839734.1| - 1.2e-07 30.9 0.0 2.8e-07 29.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|385803334|ref|YP_005839734.1| - 1.4e-07 31.0 0.0 2.6e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|385803334|ref|YP_005839734.1| - 8e-06 25.4 0.0 6e-05 22.6 0.0 2.3 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|385803334|ref|YP_005839734.1| - 1e-05 25.1 0.0 2e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|385803334|ref|YP_005839734.1| - 2e-05 24.2 0.0 5.1e-05 22.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4423 PF14394.1 gi|385803334|ref|YP_005839734.1| - 0.00076 19.0 0.0 0.0017 17.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_DeoR PF08220.7 gi|385803334|ref|YP_005839734.1| - 0.0014 18.1 0.0 0.0028 17.1 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|385803334|ref|YP_005839734.1| - 0.0019 17.6 1.2 0.0042 16.5 0.0 2.3 3 0 0 3 3 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|385803334|ref|YP_005839734.1| - 0.0064 16.1 0.0 0.016 14.8 0.0 1.7 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.14 gi|385803334|ref|YP_005839734.1| - 0.0077 16.1 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|385803334|ref|YP_005839734.1| - 0.0089 16.1 0.0 0.023 14.8 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_45 PF14947.1 gi|385803334|ref|YP_005839734.1| - 0.011 15.5 0.0 0.019 14.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_40 PF14493.1 gi|385803334|ref|YP_005839734.1| - 0.014 15.6 0.0 0.036 14.2 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.4 gi|385803334|ref|YP_005839734.1| - 0.016 15.0 0.0 0.035 14.0 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.2 gi|385803334|ref|YP_005839734.1| - 0.018 14.6 0.0 0.071 12.7 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_34 PF13601.1 gi|385803334|ref|YP_005839734.1| - 0.032 14.2 0.0 0.06 13.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|385803334|ref|YP_005839734.1| - 0.054 13.0 0.0 0.22 11.1 0.0 2.0 2 0 0 2 2 2 0 LexA DNA binding domain DUF2042 PF09743.4 gi|385803334|ref|YP_005839734.1| - 0.073 12.3 0.0 0.1 11.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2042) EAP30 PF04157.11 gi|385803334|ref|YP_005839734.1| - 0.091 11.9 0.0 0.17 11.0 0.0 1.4 1 0 0 1 1 1 0 EAP30/Vps36 family Cyclase PF04199.8 gi|385803335|ref|YP_005839735.1| - 1.1e-33 116.3 0.6 1.4e-33 115.9 0.4 1.1 1 0 0 1 1 1 1 Putative cyclase ADH_N PF08240.7 gi|385803336|ref|YP_005839736.1| - 2e-25 88.6 0.1 3.3e-25 87.9 0.0 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|385803336|ref|YP_005839736.1| - 8.9e-15 54.3 0.1 1.8e-14 53.4 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|385803336|ref|YP_005839736.1| - 2.2e-07 31.8 0.2 7e-07 30.1 0.1 1.9 2 0 0 2 2 2 1 Zinc-binding dehydrogenase adh_short PF00106.20 gi|385803336|ref|YP_005839736.1| - 0.0006 19.7 0.8 0.0014 18.5 0.6 1.6 1 0 0 1 1 1 1 short chain dehydrogenase AlaDh_PNT_C PF01262.16 gi|385803336|ref|YP_005839736.1| - 0.0028 17.2 0.1 0.0057 16.2 0.0 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|385803336|ref|YP_005839736.1| - 0.0038 16.8 0.2 0.0067 16.0 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.12 gi|385803336|ref|YP_005839736.1| - 0.014 14.2 0.2 0.029 13.2 0.1 1.5 2 0 0 2 2 2 0 RmlD substrate binding domain NmrA PF05368.8 gi|385803336|ref|YP_005839736.1| - 0.068 12.4 0.4 0.11 11.7 0.3 1.3 1 0 0 1 1 1 0 NmrA-like family NAD_binding_10 PF13460.1 gi|385803336|ref|YP_005839736.1| - 0.069 13.1 1.0 0.1 12.6 0.3 1.6 2 0 0 2 2 2 0 NADH(P)-binding 2-Hacid_dh_C PF02826.14 gi|385803336|ref|YP_005839736.1| - 0.074 12.1 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Epimerase PF01370.16 gi|385803336|ref|YP_005839736.1| - 0.077 12.4 0.2 0.12 11.7 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family CoA_transf_3 PF02515.12 gi|385803337|ref|YP_005839737.1| - 2.4e-64 216.0 0.0 3.3e-64 215.6 0.0 1.2 1 0 0 1 1 1 1 CoA-transferase family III XdhC_C PF13478.1 gi|385803338|ref|YP_005839738.1| - 5.7e-29 101.1 0.0 1.3e-28 99.9 0.0 1.6 1 0 0 1 1 1 1 XdhC Rossmann domain XdhC_CoxI PF02625.11 gi|385803338|ref|YP_005839738.1| - 1.7e-25 88.4 0.7 2.3e-20 71.9 0.1 2.4 2 0 0 2 2 2 2 XdhC and CoxI family FAD_binding_5 PF00941.16 gi|385803339|ref|YP_005839739.1| - 8.5e-45 152.2 0.0 1.2e-44 151.7 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|385803339|ref|YP_005839739.1| - 6.2e-19 67.8 0.2 9.2e-19 67.2 0.2 1.3 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Fer2_2 PF01799.15 gi|385803340|ref|YP_005839740.1| - 3.7e-33 113.2 0.1 3.7e-33 113.2 0.1 1.6 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|385803340|ref|YP_005839740.1| - 7.9e-07 28.7 0.4 7.9e-07 28.7 0.3 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|385803340|ref|YP_005839740.1| - 3.4e-05 23.6 0.1 6.3e-05 22.7 0.1 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|385803340|ref|YP_005839740.1| - 0.028 14.2 0.4 0.8 9.5 0.1 2.3 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain TSC22 PF01166.13 gi|385803340|ref|YP_005839740.1| - 0.082 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 TSC-22/dip/bun family Ald_Xan_dh_C2 PF02738.13 gi|385803341|ref|YP_005839741.1| - 5.1e-108 361.7 0.0 3.1e-107 359.1 0.0 1.9 1 1 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|385803341|ref|YP_005839741.1| - 4.1e-20 71.9 0.0 1.1e-19 70.5 0.0 1.7 2 0 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DUF4278 PF14105.1 gi|385803341|ref|YP_005839741.1| - 0.1 12.5 0.1 1.7 8.6 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4278) NTP_transf_3 PF12804.2 gi|385803342|ref|YP_005839742.1| - 1.7e-29 102.9 0.1 2.1e-29 102.6 0.1 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|385803342|ref|YP_005839742.1| - 1.2e-05 24.9 0.9 1.7e-05 24.4 0.6 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|385803342|ref|YP_005839742.1| - 0.02 14.5 0.0 0.025 14.2 0.0 1.1 1 0 0 1 1 1 0 Cytidylyltransferase STAS PF01740.16 gi|385803342|ref|YP_005839742.1| - 0.12 11.7 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 STAS domain HxlR PF01638.12 gi|385803343|ref|YP_005839743.1| - 1.6e-11 43.6 0.4 7.5e-11 41.5 0.1 2.0 2 0 0 2 2 2 1 HxlR-like helix-turn-helix Response_reg PF00072.19 gi|385803343|ref|YP_005839743.1| - 1.3e-08 34.7 0.1 2.4e-08 33.9 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain DUF4364 PF14277.1 gi|385803343|ref|YP_005839743.1| - 5.9e-05 22.7 1.4 0.0005 19.7 0.2 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF4364) HTH_45 PF14947.1 gi|385803343|ref|YP_005839743.1| - 0.00034 20.3 0.1 0.00088 19.0 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DUF2114 PF09887.4 gi|385803343|ref|YP_005839743.1| - 0.016 13.5 0.0 0.023 13.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2114) Usp PF00582.21 gi|385803344|ref|YP_005839744.1| - 3e-08 33.9 1.8 0.00026 21.1 0.0 2.4 2 0 0 2 2 2 2 Universal stress protein family Tmemb_170 PF10190.4 gi|385803345|ref|YP_005839745.1| - 0.00082 19.4 0.3 0.001 19.0 0.2 1.1 1 0 0 1 1 1 1 Putative transmembrane protein 170 7TMR-DISM_7TM PF07695.6 gi|385803345|ref|YP_005839745.1| - 0.017 14.8 5.0 0.019 14.6 3.5 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling YesK PF14150.1 gi|385803345|ref|YP_005839745.1| - 0.2 11.7 4.1 0.32 11.1 2.8 1.6 1 1 0 1 1 1 0 YesK-like protein HTH_20 PF12840.2 gi|385803346|ref|YP_005839746.1| - 3.7e-07 29.8 0.0 6.3e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|385803346|ref|YP_005839746.1| - 0.00024 20.6 0.1 0.00042 19.9 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|385803346|ref|YP_005839746.1| - 0.00034 19.9 0.1 0.00057 19.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|385803346|ref|YP_005839746.1| - 0.00073 18.9 0.1 0.0015 17.9 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 FUR PF01475.14 gi|385803346|ref|YP_005839746.1| - 0.0032 17.3 0.4 0.0039 17.1 0.3 1.3 1 1 0 1 1 1 1 Ferric uptake regulator family HTH_IclR PF09339.5 gi|385803346|ref|YP_005839746.1| - 0.0035 16.9 0.0 0.005 16.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_38 PF13936.1 gi|385803346|ref|YP_005839746.1| - 0.0066 15.9 0.1 0.015 14.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|385803346|ref|YP_005839746.1| - 0.0099 15.5 0.1 0.016 14.9 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|385803346|ref|YP_005839746.1| - 0.017 14.7 0.1 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_AsnC-type PF13404.1 gi|385803346|ref|YP_005839746.1| - 0.028 13.9 0.1 0.047 13.2 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain T2SE PF00437.15 gi|385803346|ref|YP_005839746.1| - 0.058 12.2 0.5 0.061 12.2 0.3 1.1 1 0 0 1 1 1 0 Type II/IV secretion system protein HTH_27 PF13463.1 gi|385803346|ref|YP_005839746.1| - 0.06 13.6 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Peptidase_C65 PF10275.4 gi|385803346|ref|YP_005839746.1| - 0.061 12.6 1.7 0.083 12.2 1.0 1.3 1 1 0 1 1 1 0 Peptidase C65 Otubain HTH_17 PF12728.2 gi|385803346|ref|YP_005839746.1| - 0.074 13.3 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|385803346|ref|YP_005839746.1| - 0.082 12.5 0.1 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_28 PF13518.1 gi|385803346|ref|YP_005839746.1| - 0.11 12.4 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|385803346|ref|YP_005839746.1| - 0.11 11.9 0.1 0.26 10.8 0.1 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain LUC7 PF03194.10 gi|385803346|ref|YP_005839746.1| - 0.17 11.3 3.1 0.19 11.2 2.1 1.0 1 0 0 1 1 1 0 LUC7 N_terminus AA_permease_2 PF13520.1 gi|385803347|ref|YP_005839747.1| - 4e-46 157.4 41.2 4.8e-46 157.1 28.5 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|385803347|ref|YP_005839747.1| - 2e-39 135.2 40.2 2.7e-39 134.8 27.9 1.1 1 0 0 1 1 1 1 Amino acid permease TrkA_N PF02254.13 gi|385803348|ref|YP_005839748.1| - 4.3e-23 81.5 0.2 6.7e-23 80.8 0.2 1.3 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_10 PF13460.1 gi|385803348|ref|YP_005839748.1| - 2e-07 31.2 0.1 3.8e-07 30.2 0.1 1.5 1 1 0 1 1 1 1 NADH(P)-binding TrkA_C PF02080.16 gi|385803348|ref|YP_005839748.1| - 1.8e-06 27.4 0.2 8.6e-06 25.2 0.0 2.1 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|385803348|ref|YP_005839748.1| - 3.2e-05 24.1 0.0 5.5e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|385803348|ref|YP_005839748.1| - 0.00018 21.2 0.1 0.00032 20.3 0.0 1.6 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|385803348|ref|YP_005839748.1| - 0.0002 21.7 0.1 0.0006 20.1 0.0 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NmrA PF05368.8 gi|385803348|ref|YP_005839748.1| - 0.00023 20.5 0.0 0.00033 19.9 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family FAD_binding_3 PF01494.14 gi|385803348|ref|YP_005839748.1| - 0.00029 20.0 0.0 0.00049 19.2 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain 2-Hacid_dh_C PF02826.14 gi|385803348|ref|YP_005839748.1| - 0.0003 20.0 0.0 0.00051 19.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|385803348|ref|YP_005839748.1| - 0.00042 19.7 0.0 0.00077 18.9 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA XdhC_C PF13478.1 gi|385803348|ref|YP_005839748.1| - 0.0047 17.2 0.0 0.0091 16.3 0.0 1.5 1 1 0 1 1 1 1 XdhC Rossmann domain Shikimate_DH PF01488.15 gi|385803348|ref|YP_005839748.1| - 0.0072 16.4 0.1 0.013 15.6 0.0 1.6 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase adh_short PF00106.20 gi|385803348|ref|YP_005839748.1| - 0.0074 16.2 0.2 0.013 15.4 0.1 1.5 1 1 0 1 1 1 1 short chain dehydrogenase Thi4 PF01946.12 gi|385803348|ref|YP_005839748.1| - 0.0097 15.0 0.0 1.3 8.1 0.0 2.1 1 1 1 2 2 2 2 Thi4 family DAO PF01266.19 gi|385803348|ref|YP_005839748.1| - 0.011 14.6 0.3 0.017 14.0 0.1 1.3 1 1 0 1 1 1 0 FAD dependent oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|385803348|ref|YP_005839748.1| - 0.031 14.0 0.0 0.051 13.3 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CPSase_L_chain PF00289.17 gi|385803348|ref|YP_005839748.1| - 0.051 13.6 0.0 0.077 13.1 0.0 1.4 1 1 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_binding_2 PF03446.10 gi|385803348|ref|YP_005839748.1| - 0.054 13.3 0.0 0.078 12.8 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Saccharop_dh PF03435.13 gi|385803348|ref|YP_005839748.1| - 0.057 12.3 0.0 0.072 12.0 0.0 1.1 1 0 0 1 1 1 0 Saccharopine dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|385803348|ref|YP_005839748.1| - 0.073 12.4 0.4 0.16 11.3 0.0 1.7 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AdoHcyase_NAD PF00670.16 gi|385803348|ref|YP_005839748.1| - 0.09 12.6 0.0 0.43 10.4 0.0 1.9 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Nitro_FeMo-Co PF02579.12 gi|385803348|ref|YP_005839748.1| - 0.093 12.8 0.0 1.5 8.9 0.0 2.5 2 1 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor TrkA_N PF02254.13 gi|385803349|ref|YP_005839749.1| - 1.8e-39 134.3 9.7 1.9e-19 69.7 1.2 2.8 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|385803349|ref|YP_005839749.1| - 2.5e-27 94.2 0.4 2.7e-12 46.0 0.0 3.8 4 0 0 4 4 4 2 TrkA-C domain NAD_binding_7 PF13241.1 gi|385803349|ref|YP_005839749.1| - 0.00038 20.6 2.6 0.00049 20.2 0.1 2.3 2 1 0 2 2 2 1 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|385803349|ref|YP_005839749.1| - 0.019 14.0 0.0 0.03 13.3 0.0 1.4 1 0 0 1 1 1 0 FAD binding domain AlaDh_PNT_C PF01262.16 gi|385803349|ref|YP_005839749.1| - 0.048 13.2 0.1 0.13 11.7 0.0 1.7 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ADH_zinc_N PF00107.21 gi|385803349|ref|YP_005839749.1| - 0.11 12.0 0.0 0.52 9.8 0.0 2.1 1 0 0 1 1 1 0 Zinc-binding dehydrogenase ThiF PF00899.16 gi|385803349|ref|YP_005839749.1| - 0.13 12.0 2.9 0.14 11.9 0.4 2.2 2 1 0 2 2 2 0 ThiF family NAD_binding_2 PF03446.10 gi|385803349|ref|YP_005839749.1| - 0.14 11.9 1.5 0.23 11.2 0.1 2.0 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Saccharop_dh PF03435.13 gi|385803349|ref|YP_005839749.1| - 0.19 10.6 1.3 0.21 10.5 0.0 1.7 2 0 0 2 2 2 0 Saccharopine dehydrogenase Fibritin_C PF07921.7 gi|385803349|ref|YP_005839749.1| - 0.33 10.8 2.1 1.5 8.8 0.2 2.7 2 1 1 3 3 3 0 Fibritin C-terminal region DUF2892 PF11127.3 gi|385803350|ref|YP_005839750.1| - 6e-09 35.5 0.7 6.4e-09 35.5 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) Nramp PF01566.13 gi|385803351|ref|YP_005839751.1| - 9.7e-59 198.9 34.9 9.7e-59 198.9 24.2 1.9 1 1 1 2 2 2 1 Natural resistance-associated macrophage protein CitMHS PF03600.11 gi|385803352|ref|YP_005839752.1| - 9.7e-48 162.5 0.0 6.8e-43 146.5 0.0 1.9 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.14 gi|385803352|ref|YP_005839752.1| - 1.7e-26 93.1 35.1 4.4e-16 58.8 9.8 2.8 2 1 0 2 2 2 2 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.16 gi|385803352|ref|YP_005839752.1| - 2.3e-20 71.9 0.9 7.5e-11 41.4 0.1 2.4 2 0 0 2 2 2 2 TrkA-C domain Erv26 PF04148.8 gi|385803352|ref|YP_005839752.1| - 0.018 14.4 4.4 1.6 8.0 0.0 2.4 2 0 0 2 2 2 0 Transmembrane adaptor Erv26 DUF2371 PF10177.4 gi|385803352|ref|YP_005839752.1| - 0.13 12.1 0.3 0.98 9.2 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) TrkA_N PF02254.13 gi|385803353|ref|YP_005839753.1| - 1.1e-24 86.7 0.7 1.1e-24 86.7 0.5 1.7 2 1 0 2 2 2 1 TrkA-N domain NAD_binding_7 PF13241.1 gi|385803353|ref|YP_005839753.1| - 1.8e-08 34.5 0.1 3e-08 33.8 0.1 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_C PF02080.16 gi|385803353|ref|YP_005839753.1| - 1e-06 28.2 0.8 3.6e-06 26.4 0.1 2.1 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_10 PF13460.1 gi|385803353|ref|YP_005839753.1| - 8.3e-06 25.9 0.2 1.2e-05 25.3 0.1 1.2 1 0 0 1 1 1 1 NADH(P)-binding DAO PF01266.19 gi|385803353|ref|YP_005839753.1| - 2.7e-05 23.2 0.5 3.1e-05 23.0 0.4 1.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase CPSase_L_chain PF00289.17 gi|385803353|ref|YP_005839753.1| - 3.9e-05 23.7 0.1 7.2e-05 22.8 0.1 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain FAD_binding_2 PF00890.19 gi|385803353|ref|YP_005839753.1| - 4.8e-05 22.3 0.3 5.2e-05 22.2 0.2 1.1 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.14 gi|385803353|ref|YP_005839753.1| - 0.00012 21.2 0.5 0.0011 18.1 0.0 2.1 1 1 1 2 2 2 1 FAD binding domain Pyr_redox PF00070.22 gi|385803353|ref|YP_005839753.1| - 0.00027 21.2 0.2 0.00057 20.2 0.2 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase adh_short PF00106.20 gi|385803353|ref|YP_005839753.1| - 0.00028 20.8 1.7 0.00037 20.4 0.9 1.5 1 1 0 1 1 1 1 short chain dehydrogenase Pyr_redox_2 PF07992.9 gi|385803353|ref|YP_005839753.1| - 0.00089 19.1 0.2 0.001 18.9 0.1 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.12 gi|385803353|ref|YP_005839753.1| - 0.00094 19.5 1.0 0.015 15.6 0.2 2.7 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|385803353|ref|YP_005839753.1| - 0.0028 17.3 0.3 0.0054 16.4 0.1 1.5 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|385803353|ref|YP_005839753.1| - 0.0032 16.8 0.0 0.0055 16.0 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_8 PF13450.1 gi|385803353|ref|YP_005839753.1| - 0.0043 17.0 0.1 0.0087 16.0 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|385803353|ref|YP_005839753.1| - 0.0098 15.0 0.0 0.014 14.4 0.0 1.4 1 0 0 1 1 1 1 Thi4 family KR PF08659.5 gi|385803353|ref|YP_005839753.1| - 0.015 14.9 0.2 0.021 14.4 0.1 1.3 1 0 0 1 1 1 0 KR domain ApbA PF02558.11 gi|385803353|ref|YP_005839753.1| - 0.017 14.5 0.0 0.029 13.8 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.14 gi|385803353|ref|YP_005839753.1| - 0.02 14.0 0.1 0.031 13.4 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|385803353|ref|YP_005839753.1| - 0.02 14.2 0.0 0.03 13.6 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Shikimate_DH PF01488.15 gi|385803353|ref|YP_005839753.1| - 0.024 14.7 0.1 0.042 13.9 0.1 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|385803353|ref|YP_005839753.1| - 0.037 13.7 0.0 0.076 12.7 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HI0933_like PF03486.9 gi|385803353|ref|YP_005839753.1| - 0.054 11.9 0.1 0.078 11.4 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein NAD_binding_2 PF03446.10 gi|385803353|ref|YP_005839753.1| - 0.077 12.8 0.1 0.18 11.6 0.0 1.6 1 1 1 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase XdhC_C PF13478.1 gi|385803353|ref|YP_005839753.1| - 0.086 13.1 0.1 0.19 12.0 0.0 1.6 2 0 0 2 2 2 0 XdhC Rossmann domain GFO_IDH_MocA PF01408.17 gi|385803353|ref|YP_005839753.1| - 0.1 13.1 0.0 0.17 12.3 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Saccharop_dh PF03435.13 gi|385803353|ref|YP_005839753.1| - 0.12 11.2 0.1 0.17 10.8 0.1 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Trp_halogenase PF04820.9 gi|385803353|ref|YP_005839753.1| - 0.13 10.8 0.1 0.17 10.4 0.0 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Usp PF00582.21 gi|385803354|ref|YP_005839754.1| - 8.7e-33 113.4 0.1 9.8e-33 113.3 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF2088 PF09861.4 gi|385803355|ref|YP_005839755.1| - 2.8e-05 23.2 0.0 4.8e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) UBA_4 PF14555.1 gi|385803356|ref|YP_005839756.1| - 0.11 12.0 0.1 0.18 11.3 0.1 1.3 1 0 0 1 1 1 0 UBA-like domain Usp PF00582.21 gi|385803357|ref|YP_005839757.1| - 5.5e-57 191.8 5.0 1e-28 100.3 0.0 2.1 2 0 0 2 2 2 2 Universal stress protein family FR47 PF08445.5 gi|385803357|ref|YP_005839757.1| - 0.08 12.7 0.0 0.24 11.1 0.0 1.9 1 1 0 1 1 1 0 FR47-like protein DUF21 PF01595.15 gi|385803358|ref|YP_005839758.1| - 1.5e-50 171.0 0.3 2.1e-50 170.5 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|385803358|ref|YP_005839758.1| - 5.4e-20 70.9 2.3 5.9e-20 70.8 0.6 1.9 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.23 gi|385803358|ref|YP_005839758.1| - 1.7e-15 56.5 1.6 4.9e-07 29.4 0.4 2.7 2 0 0 2 2 2 2 CBS domain PHB_acc_N PF07879.6 gi|385803358|ref|YP_005839758.1| - 0.046 13.4 0.4 4.9 6.9 0.0 2.7 2 0 0 2 2 2 0 PHB/PHA accumulation regulator DNA-binding domain GerE PF00196.14 gi|385803359|ref|YP_005839759.1| - 9.9e-08 31.1 0.0 1.7e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family DUF4379 PF14311.1 gi|385803359|ref|YP_005839759.1| - 0.0035 17.1 3.1 0.079 12.7 0.7 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4379) HTH_38 PF13936.1 gi|385803359|ref|YP_005839759.1| - 0.0041 16.6 0.0 0.01 15.3 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain DUF2481 PF10654.4 gi|385803359|ref|YP_005839759.1| - 0.0087 15.7 0.1 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2481) HTH_24 PF13412.1 gi|385803359|ref|YP_005839759.1| - 0.0097 15.2 0.0 0.018 14.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|385803359|ref|YP_005839759.1| - 0.011 15.1 0.0 0.024 14.0 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_23 PF13384.1 gi|385803359|ref|YP_005839759.1| - 0.066 12.8 0.0 0.16 11.6 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_10 PF04967.7 gi|385803359|ref|YP_005839759.1| - 0.084 12.4 0.0 0.25 10.9 0.0 1.8 1 0 0 1 1 1 0 HTH DNA binding domain Rubredoxin PF00301.15 gi|385803359|ref|YP_005839759.1| - 0.57 10.1 5.2 4.2 7.3 0.3 2.5 2 1 0 2 2 2 0 Rubredoxin PHD PF00628.24 gi|385803359|ref|YP_005839759.1| - 2 8.1 6.4 12 5.7 1.8 2.3 1 1 1 2 2 2 0 PHD-finger MoeA_N PF03453.12 gi|385803360|ref|YP_005839760.1| - 0.077 12.3 0.2 0.17 11.2 0.1 1.7 1 1 0 1 1 1 0 MoeA N-terminal region (domain I and II) AhpC-TSA PF00578.16 gi|385803361|ref|YP_005839761.1| - 6.7e-27 93.6 0.0 8.6e-27 93.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|385803361|ref|YP_005839761.1| - 3.1e-13 49.4 0.0 3.6e-13 49.2 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|385803361|ref|YP_005839761.1| - 3.8e-06 26.7 0.0 4.4e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme Phospho_p8 PF10195.4 gi|385803361|ref|YP_005839761.1| - 0.084 12.7 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 DNA-binding nuclear phosphoprotein p8 Big_1 PF02369.11 gi|385803362|ref|YP_005839762.1| - 0.042 13.7 2.5 0.13 12.2 1.5 2.1 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 1) Myco_19_kDa PF05481.7 gi|385803362|ref|YP_005839762.1| - 0.11 12.3 1.3 0.18 11.5 0.1 1.9 2 0 0 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen RtcB PF01139.12 gi|385803363|ref|YP_005839763.1| - 2.5e-109 366.0 0.0 3.2e-109 365.7 0.0 1.1 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB MRAP PF15183.1 gi|385803365|ref|YP_005839765.1| - 0.024 14.2 0.1 0.026 14.1 0.1 1.1 1 0 0 1 1 1 0 Melanocortin-2 receptor accessory protein family SdpI PF13630.1 gi|385803365|ref|YP_005839765.1| - 0.046 13.4 0.6 0.051 13.2 0.4 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family adh_short PF00106.20 gi|385803366|ref|YP_005839766.1| - 1.1e-36 126.3 1.9 1.5e-36 125.8 1.3 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|385803366|ref|YP_005839766.1| - 1.2e-20 74.3 0.1 1.5e-20 73.9 0.1 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|385803366|ref|YP_005839766.1| - 4.3e-19 68.8 0.6 5.2e-19 68.5 0.4 1.1 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|385803366|ref|YP_005839766.1| - 4.3e-10 39.9 2.5 9.4e-10 38.7 1.7 1.5 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|385803366|ref|YP_005839766.1| - 8.5e-05 22.0 0.4 0.00079 18.9 0.1 2.2 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.14 gi|385803366|ref|YP_005839766.1| - 0.00032 19.7 0.1 0.0006 18.9 0.1 1.5 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Eno-Rase_NADH_b PF12242.3 gi|385803366|ref|YP_005839766.1| - 0.0036 17.0 0.1 0.0036 17.0 0.1 2.1 3 0 0 3 3 3 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Shikimate_DH PF01488.15 gi|385803366|ref|YP_005839766.1| - 0.007 16.4 0.1 0.014 15.4 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NmrA PF05368.8 gi|385803366|ref|YP_005839766.1| - 0.0092 15.2 1.0 2.8 7.1 0.1 2.4 2 0 0 2 2 2 2 NmrA-like family OpuAC PF04069.7 gi|385803366|ref|YP_005839766.1| - 0.024 13.9 0.0 0.039 13.2 0.0 1.3 1 0 0 1 1 1 0 Substrate binding domain of ABC-type glycine betaine transport system 2-Hacid_dh_C PF02826.14 gi|385803366|ref|YP_005839766.1| - 0.027 13.6 0.0 0.045 12.9 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HEM4 PF02602.10 gi|385803366|ref|YP_005839766.1| - 0.067 12.4 0.2 0.22 10.7 0.1 1.8 1 1 1 2 2 2 0 Uroporphyrinogen-III synthase HemD ABC_tran PF00005.22 gi|385803367|ref|YP_005839767.1| - 5.1e-32 111.0 0.1 1.3e-31 109.7 0.0 1.7 2 0 0 2 2 1 1 ABC transporter ABC_membrane PF00664.18 gi|385803367|ref|YP_005839767.1| - 2.8e-23 82.7 8.5 4.3e-23 82.0 5.9 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.14 gi|385803367|ref|YP_005839767.1| - 4e-06 26.2 1.6 8e-05 21.9 1.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|385803367|ref|YP_005839767.1| - 1.1e-05 25.6 1.1 0.0019 18.2 0.1 2.8 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|385803367|ref|YP_005839767.1| - 4.4e-05 24.2 0.1 0.00036 21.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|385803367|ref|YP_005839767.1| - 0.0053 16.4 0.1 0.011 15.4 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|385803367|ref|YP_005839767.1| - 0.0056 16.8 0.1 0.069 13.2 0.0 2.5 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|385803367|ref|YP_005839767.1| - 0.0072 16.4 0.0 0.023 14.8 0.0 1.9 2 0 0 2 2 1 1 RNA helicase AAA_24 PF13479.1 gi|385803367|ref|YP_005839767.1| - 0.0082 15.7 0.0 0.016 14.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|385803367|ref|YP_005839767.1| - 0.0097 15.0 0.8 0.024 13.7 0.0 2.0 3 0 0 3 3 3 1 Zeta toxin AAA_16 PF13191.1 gi|385803367|ref|YP_005839767.1| - 0.011 15.7 0.1 0.031 14.2 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.1 gi|385803367|ref|YP_005839767.1| - 0.019 15.2 0.6 0.075 13.3 0.1 2.2 2 1 0 2 2 1 0 AAA domain AAA_33 PF13671.1 gi|385803367|ref|YP_005839767.1| - 0.019 14.8 0.0 0.072 12.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|385803367|ref|YP_005839767.1| - 0.033 14.1 0.0 0.21 11.5 0.0 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase DUF258 PF03193.11 gi|385803367|ref|YP_005839767.1| - 0.038 13.1 0.0 0.08 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 PRK PF00485.13 gi|385803367|ref|YP_005839767.1| - 0.056 12.9 0.1 0.18 11.3 0.0 1.9 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family DUF87 PF01935.12 gi|385803367|ref|YP_005839767.1| - 0.06 13.1 0.9 0.21 11.3 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function DUF87 AAA_29 PF13555.1 gi|385803367|ref|YP_005839767.1| - 0.095 12.2 0.0 0.24 10.9 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP_bind_1 PF03029.12 gi|385803367|ref|YP_005839767.1| - 0.096 12.2 0.1 0.51 9.8 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein FtsK_SpoIIIE PF01580.13 gi|385803367|ref|YP_005839767.1| - 0.14 11.6 0.0 0.3 10.5 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family N6_N4_Mtase PF01555.13 gi|385803368|ref|YP_005839768.1| - 1.1e-41 142.8 2.0 1.3e-41 142.6 1.4 1.0 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|385803368|ref|YP_005839768.1| - 1.1e-06 28.6 0.0 0.041 13.9 0.0 2.2 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385803368|ref|YP_005839768.1| - 0.00036 21.0 0.0 0.003 18.1 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385803368|ref|YP_005839768.1| - 0.0053 16.3 0.0 0.038 13.5 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|385803368|ref|YP_005839768.1| - 0.03 14.8 0.0 8.5 6.9 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_4 PF02390.12 gi|385803368|ref|YP_005839768.1| - 0.049 12.6 0.0 0.12 11.3 0.0 1.6 1 1 0 1 1 1 0 Putative methyltransferase Methyltransf_25 PF13649.1 gi|385803368|ref|YP_005839768.1| - 0.051 13.9 0.0 0.81 10.0 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain HABP4_PAI-RBP1 PF04774.10 gi|385803368|ref|YP_005839768.1| - 5.6 7.5 8.3 6.7 7.2 1.1 2.9 3 0 0 3 3 3 0 Hyaluronan / mRNA binding family Cytochrom_C552 PF02335.10 gi|385803369|ref|YP_005839769.1| - 0.044 12.4 2.7 0.066 11.8 1.9 1.2 1 0 0 1 1 1 0 Cytochrome c552 RNA_pol_Rpb1_3 PF04983.13 gi|385803369|ref|YP_005839769.1| - 0.058 13.1 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 3 Aldedh PF00171.17 gi|385803370|ref|YP_005839770.1| - 1.2e-172 574.3 0.0 1.4e-172 574.1 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DDE_5 PF13546.1 gi|385803371|ref|YP_005839771.1| - 5.5e-20 71.3 0.0 8.7e-20 70.6 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.16 gi|385803371|ref|YP_005839771.1| - 2.8e-17 62.9 0.4 5.2e-17 62.0 0.1 1.6 2 1 0 2 2 2 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|385803371|ref|YP_005839771.1| - 0.00011 21.3 0.5 0.00045 19.3 0.3 1.8 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_6 PF13751.1 gi|385803371|ref|YP_005839771.1| - 0.01 15.8 0.0 0.035 14.1 0.0 1.9 2 0 0 2 2 2 0 Transposase DDE domain DUF2892 PF11127.3 gi|385803372|ref|YP_005839772.1| - 2e-17 62.7 1.5 2.6e-17 62.3 1.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) DUF3040 PF11239.3 gi|385803372|ref|YP_005839772.1| - 0.04 13.9 2.1 0.045 13.8 1.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) DUF3149 PF11346.3 gi|385803372|ref|YP_005839772.1| - 1.9 8.1 6.3 6.5 6.3 4.3 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3149) SfsA PF03749.8 gi|385803373|ref|YP_005839773.1| - 1.8e-52 177.9 0.0 2.2e-52 177.6 0.0 1.0 1 0 0 1 1 1 1 Sugar fermentation stimulation protein NMT1 PF09084.6 gi|385803374|ref|YP_005839774.1| - 3.5e-08 33.3 0.0 5.8e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.1 gi|385803374|ref|YP_005839774.1| - 4.4e-06 26.2 0.0 6e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.15 gi|385803374|ref|YP_005839774.1| - 0.0049 16.1 0.0 0.0081 15.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 VitK2_biosynth PF02621.9 gi|385803374|ref|YP_005839774.1| - 0.0069 15.6 0.1 0.041 13.0 0.0 2.1 2 0 0 2 2 2 1 Menaquinone biosynthesis TAT_signal PF10518.4 gi|385803374|ref|YP_005839774.1| - 0.016 15.1 0.0 0.049 13.6 0.0 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Phosphonate-bd PF12974.2 gi|385803374|ref|YP_005839774.1| - 0.052 12.9 0.0 0.067 12.5 0.0 1.3 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein BPD_transp_1 PF00528.17 gi|385803375|ref|YP_005839775.1| - 3.9e-17 62.3 12.9 3.9e-17 62.3 8.9 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|385803376|ref|YP_005839776.1| - 4.9e-32 111.1 0.0 1.5e-31 109.5 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|385803376|ref|YP_005839776.1| - 4e-08 33.5 0.0 2.8e-06 27.5 0.0 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|385803376|ref|YP_005839776.1| - 0.00049 19.3 0.2 0.2 10.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|385803376|ref|YP_005839776.1| - 0.0013 17.9 0.0 0.0022 17.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|385803376|ref|YP_005839776.1| - 0.0042 16.5 0.1 0.0089 15.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|385803376|ref|YP_005839776.1| - 0.0058 16.6 1.3 0.042 13.8 0.9 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|385803376|ref|YP_005839776.1| - 0.0068 16.6 0.2 0.035 14.3 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|385803376|ref|YP_005839776.1| - 0.0097 15.8 0.2 0.083 12.8 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.1 gi|385803376|ref|YP_005839776.1| - 0.019 14.7 0.1 0.09 12.5 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain AAA_18 PF13238.1 gi|385803376|ref|YP_005839776.1| - 0.03 14.6 0.0 0.069 13.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|385803376|ref|YP_005839776.1| - 0.04 12.6 0.0 0.055 12.1 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_17 PF13207.1 gi|385803376|ref|YP_005839776.1| - 0.041 14.7 0.4 0.095 13.5 0.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|385803376|ref|YP_005839776.1| - 0.043 13.7 0.0 0.26 11.2 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|385803376|ref|YP_005839776.1| - 0.048 13.5 0.3 0.19 11.6 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|385803376|ref|YP_005839776.1| - 0.051 13.8 0.3 0.072 13.4 0.2 1.4 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|385803376|ref|YP_005839776.1| - 0.055 12.3 0.1 0.088 11.6 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_15 PF13175.1 gi|385803376|ref|YP_005839776.1| - 0.068 12.2 0.0 1.2 8.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Mg_chelatase PF01078.16 gi|385803376|ref|YP_005839776.1| - 0.085 12.0 0.1 0.5 9.4 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI PduV-EutP PF10662.4 gi|385803376|ref|YP_005839776.1| - 0.097 12.1 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_22 PF13401.1 gi|385803376|ref|YP_005839776.1| - 0.099 12.7 0.2 0.16 12.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|385803376|ref|YP_005839776.1| - 0.12 11.2 0.0 0.19 10.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_25 PF13481.1 gi|385803376|ref|YP_005839776.1| - 0.14 11.5 0.1 0.85 8.9 0.0 2.0 2 1 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|385803377|ref|YP_005839777.1| - 1.1e-14 54.3 18.3 1.1e-14 54.3 12.7 1.9 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2678 PF10856.3 gi|385803377|ref|YP_005839777.1| - 4.1 7.1 10.1 8.1 6.2 4.3 3.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2678) AIRC PF00731.15 gi|385803378|ref|YP_005839778.1| - 1e-17 63.7 3.8 1.9e-17 62.9 2.7 1.4 1 0 0 1 1 1 1 AIR carboxylase QRPTase_C PF01729.14 gi|385803379|ref|YP_005839779.1| - 4.4e-20 71.8 0.0 6.2e-20 71.4 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|385803379|ref|YP_005839779.1| - 1.1e-05 25.1 0.0 4.6e-05 23.1 0.0 2.1 2 1 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain Saccharop_dh PF03435.13 gi|385803380|ref|YP_005839780.1| - 4.9e-14 52.0 0.0 7.3e-14 51.5 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|385803380|ref|YP_005839780.1| - 0.00033 20.7 0.0 0.0032 17.5 0.0 2.3 2 1 0 2 2 2 1 NADH(P)-binding Epimerase PF01370.16 gi|385803380|ref|YP_005839780.1| - 0.00036 20.0 0.0 0.00085 18.8 0.0 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 5HT_transporter PF03491.8 gi|385803380|ref|YP_005839780.1| - 0.039 14.0 0.0 0.13 12.3 0.0 1.9 1 0 0 1 1 1 0 Serotonin (5-HT) neurotransmitter transporter, N-terminus 3Beta_HSD PF01073.14 gi|385803380|ref|YP_005839780.1| - 0.046 12.4 0.0 0.067 11.8 0.0 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.8 gi|385803380|ref|YP_005839780.1| - 0.072 12.3 0.0 0.18 11.0 0.0 1.6 1 1 0 1 1 1 0 NmrA-like family Polysacc_synt_2 PF02719.10 gi|385803380|ref|YP_005839780.1| - 0.083 11.7 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Helicase_C_2 PF13307.1 gi|385803381|ref|YP_005839781.1| - 4.8e-25 88.4 0.0 9e-25 87.5 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|385803381|ref|YP_005839781.1| - 1.9e-13 50.1 0.1 6.1e-12 45.2 0.0 2.3 2 0 0 2 2 2 1 DEAD_2 DEAD PF00270.24 gi|385803381|ref|YP_005839781.1| - 3.7e-07 29.7 0.2 0.02 14.3 0.0 2.7 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.10 gi|385803381|ref|YP_005839781.1| - 0.00082 19.2 0.1 0.21 11.4 0.0 2.4 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit AAA_30 PF13604.1 gi|385803381|ref|YP_005839781.1| - 0.0083 15.7 1.0 0.34 10.4 0.0 2.7 3 0 0 3 3 3 1 AAA domain DUF2075 PF09848.4 gi|385803381|ref|YP_005839781.1| - 0.023 13.6 0.0 1.8 7.4 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.1 gi|385803381|ref|YP_005839781.1| - 0.066 12.9 0.3 0.2 11.4 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain PhoH PF02562.11 gi|385803381|ref|YP_005839781.1| - 0.067 12.4 0.0 0.18 11.0 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein AAA_11 PF13086.1 gi|385803381|ref|YP_005839781.1| - 0.067 12.7 0.0 0.26 10.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain Metallophos_2 PF12850.2 gi|385803382|ref|YP_005839782.1| - 6.2e-05 22.8 0.1 8.1e-05 22.5 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|385803382|ref|YP_005839782.1| - 8.6e-05 22.0 2.9 0.0002 20.8 1.8 1.6 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase HTH_12 PF08461.5 gi|385803383|ref|YP_005839783.1| - 0.017 14.8 0.1 0.019 14.6 0.1 1.2 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HARE-HTH PF05066.8 gi|385803383|ref|YP_005839783.1| - 0.077 13.3 0.0 0.089 13.1 0.0 1.2 1 0 0 1 1 1 0 HB1, ASXL, restriction endonuclease HTH domain Beta-Casp PF10996.3 gi|385803384|ref|YP_005839784.1| - 4.6e-23 81.5 0.0 9e-23 80.5 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B_2 PF12706.2 gi|385803384|ref|YP_005839784.1| - 1.1e-14 54.3 0.6 2.3e-13 50.1 0.4 2.3 2 1 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|385803384|ref|YP_005839784.1| - 2e-12 47.1 2.3 4.1e-10 39.6 0.7 2.4 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|385803384|ref|YP_005839784.1| - 1.9e-08 33.9 0.1 3.9e-08 32.9 0.0 1.5 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase PDEase_II PF02112.10 gi|385803384|ref|YP_005839784.1| - 0.027 13.4 1.0 0.039 12.8 0.1 1.6 2 0 0 2 2 2 0 cAMP phosphodiesterases class-II AIRC PF00731.15 gi|385803384|ref|YP_005839784.1| - 0.072 12.3 0.1 0.38 10.0 0.0 2.2 3 0 0 3 3 3 0 AIR carboxylase FlgD_ig PF13860.1 gi|385803385|ref|YP_005839785.1| - 0.0026 17.4 0.4 0.013 15.1 0.1 2.4 1 1 1 2 2 2 1 FlgD Ig-like domain Flavi_glycoprot PF00869.15 gi|385803385|ref|YP_005839785.1| - 0.0047 15.9 0.3 0.0056 15.7 0.2 1.1 1 0 0 1 1 1 1 Flavivirus glycoprotein, central and dimerisation domains CHU_C PF13585.1 gi|385803385|ref|YP_005839785.1| - 0.018 14.9 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 C-terminal domain of CHU protein family fn3 PF00041.16 gi|385803385|ref|YP_005839785.1| - 0.042 13.9 1.7 0.061 13.4 0.5 1.7 1 1 1 2 2 2 0 Fibronectin type III domain DUF3244 PF11589.3 gi|385803385|ref|YP_005839785.1| - 0.076 12.7 0.2 0.1 12.3 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3244) I-set PF07679.11 gi|385803385|ref|YP_005839785.1| - 0.39 10.6 2.5 0.98 9.3 0.3 2.1 2 0 0 2 2 2 0 Immunoglobulin I-set domain adh_short PF00106.20 gi|385803387|ref|YP_005839787.1| - 3.3e-31 108.4 1.9 5.1e-31 107.8 1.3 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|385803387|ref|YP_005839787.1| - 2.6e-13 50.0 0.4 3.5e-13 49.6 0.3 1.1 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|385803387|ref|YP_005839787.1| - 4.7e-12 46.1 0.0 6.3e-12 45.7 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NAD_binding_10 PF13460.1 gi|385803387|ref|YP_005839787.1| - 6.5e-05 23.0 3.0 0.00033 20.7 2.1 2.0 1 1 0 1 1 1 1 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|385803387|ref|YP_005839787.1| - 0.00041 20.0 0.5 0.001 18.8 0.4 1.7 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Epimerase PF01370.16 gi|385803387|ref|YP_005839787.1| - 0.0085 15.5 1.8 0.021 14.2 0.3 2.2 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|385803387|ref|YP_005839787.1| - 0.015 14.2 0.0 0.021 13.7 0.0 1.3 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Shikimate_DH PF01488.15 gi|385803387|ref|YP_005839787.1| - 0.021 14.9 0.4 0.061 13.4 0.2 1.8 1 1 1 2 2 2 0 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.14 gi|385803387|ref|YP_005839787.1| - 0.04 13.0 0.1 0.064 12.3 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.14 gi|385803387|ref|YP_005839787.1| - 0.043 12.8 0.4 0.08 12.0 0.3 1.4 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DFP PF04127.10 gi|385803387|ref|YP_005839787.1| - 0.24 11.0 1.9 0.46 10.0 1.3 1.5 1 1 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Lysine_decarbox PF03641.9 gi|385803388|ref|YP_005839788.1| - 6.5e-10 38.9 0.1 9.2e-10 38.4 0.1 1.2 1 0 0 1 1 1 1 Possible lysine decarboxylase Nuc_deoxyrib_tr PF05014.10 gi|385803388|ref|YP_005839788.1| - 0.0098 15.7 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase DNA_processg_A PF02481.10 gi|385803388|ref|YP_005839788.1| - 0.012 14.4 0.7 0.13 11.1 0.7 1.9 1 1 1 2 2 2 0 DNA recombination-mediator protein A AA_kinase PF00696.23 gi|385803388|ref|YP_005839788.1| - 0.055 12.9 0.1 0.08 12.4 0.1 1.2 1 0 0 1 1 1 0 Amino acid kinase family DAGK_cat PF00781.19 gi|385803388|ref|YP_005839788.1| - 1.3 8.4 6.2 4.4 6.7 0.3 2.4 2 1 0 2 2 2 0 Diacylglycerol kinase catalytic domain Fer2 PF00111.22 gi|385803389|ref|YP_005839789.1| - 6.9e-15 54.5 0.3 1.1e-14 53.8 0.2 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|385803389|ref|YP_005839789.1| - 0.05 13.4 0.1 0.096 12.5 0.1 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain GIDE PF12483.3 gi|385803390|ref|YP_005839790.1| - 6.7e-06 25.5 0.1 0.016 14.5 0.0 2.4 2 0 0 2 2 2 2 E3 Ubiquitin ligase Polysacc_synt_2 PF02719.10 gi|385803391|ref|YP_005839791.1| - 0.1 11.4 0.0 0.11 11.3 0.0 1.0 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|385803392|ref|YP_005839792.1| - 1.9e-20 73.6 1.6 2.4e-20 73.3 0.3 1.7 2 0 0 2 2 2 1 NADH(P)-binding NmrA PF05368.8 gi|385803392|ref|YP_005839792.1| - 3.1e-12 46.2 0.0 4.6e-12 45.6 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|385803392|ref|YP_005839792.1| - 5.2e-08 32.6 0.1 1.1e-07 31.5 0.0 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|385803392|ref|YP_005839792.1| - 0.00012 20.8 0.0 0.00017 20.3 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|385803392|ref|YP_005839792.1| - 0.00073 18.5 0.0 0.0038 16.1 0.0 2.0 2 0 0 2 2 2 1 Male sterility protein Semialdhyde_dh PF01118.19 gi|385803392|ref|YP_005839792.1| - 0.016 15.4 0.0 0.034 14.4 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.12 gi|385803392|ref|YP_005839792.1| - 0.023 13.5 0.0 0.2 10.5 0.0 2.0 2 0 0 2 2 2 0 RmlD substrate binding domain DapB_N PF01113.15 gi|385803392|ref|YP_005839792.1| - 0.058 13.3 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus ApbA PF02558.11 gi|385803392|ref|YP_005839792.1| - 0.096 12.1 0.1 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Methyltransf_11 PF08241.7 gi|385803394|ref|YP_005839794.1| - 9.9e-15 54.8 0.0 1.8e-14 53.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|385803394|ref|YP_005839794.1| - 1.2e-13 51.0 0.0 1.8e-13 50.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385803394|ref|YP_005839794.1| - 4.8e-11 42.4 0.2 0.00032 20.3 0.0 2.6 2 1 0 2 2 2 2 Methyltransferase domain Methyltransf_8 PF05148.10 gi|385803394|ref|YP_005839794.1| - 8e-10 38.7 0.0 1.4e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_18 PF12847.2 gi|385803394|ref|YP_005839794.1| - 8.1e-07 29.6 0.6 5.4e-05 23.7 0.2 2.8 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|385803394|ref|YP_005839794.1| - 3.9e-06 26.9 0.1 2.5e-05 24.2 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|385803394|ref|YP_005839794.1| - 8.4e-05 22.8 0.3 0.0043 17.3 0.1 2.6 2 1 0 2 2 2 1 Methyltransferase domain CMAS PF02353.15 gi|385803394|ref|YP_005839794.1| - 0.00018 20.7 0.1 0.0005 19.2 0.0 1.7 2 1 0 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_12 PF08242.7 gi|385803394|ref|YP_005839794.1| - 0.0004 20.7 0.0 0.012 16.0 0.0 2.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|385803394|ref|YP_005839794.1| - 0.016 14.5 0.1 0.027 13.8 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase small domain PrmA PF06325.8 gi|385803394|ref|YP_005839794.1| - 0.065 12.3 0.8 0.16 11.0 0.4 1.9 1 1 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_29 PF03141.11 gi|385803394|ref|YP_005839794.1| - 0.086 11.1 0.0 0.093 11.0 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase MetW PF07021.7 gi|385803394|ref|YP_005839794.1| - 0.15 11.4 0.0 0.23 10.7 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Radical_SAM PF04055.16 gi|385803395|ref|YP_005839795.1| - 5.9e-23 81.8 0.0 9.3e-23 81.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|385803395|ref|YP_005839795.1| - 4.4e-08 33.1 0.0 9.1e-08 32.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|385803395|ref|YP_005839795.1| - 9.4e-07 29.0 0.0 1.7e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Thioredoxin_3 PF13192.1 gi|385803396|ref|YP_005839796.1| - 2.6e-05 23.9 0.0 3.2e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain AhpC-TSA PF00578.16 gi|385803397|ref|YP_005839797.1| - 1.2e-17 63.7 0.0 1.5e-17 63.4 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|385803397|ref|YP_005839797.1| - 5.7e-11 42.1 0.0 7.2e-11 41.8 0.0 1.1 1 0 0 1 1 1 1 Redoxin UvdE PF03851.9 gi|385803398|ref|YP_005839798.1| - 5.3e-50 169.9 0.0 6.3e-50 169.7 0.0 1.0 1 0 0 1 1 1 1 UV-endonuclease UvdE AP_endonuc_2 PF01261.19 gi|385803398|ref|YP_005839798.1| - 3.8e-05 23.0 0.0 5.4e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel zinc-ribbons_6 PF07191.7 gi|385803399|ref|YP_005839799.1| - 0.011 15.4 3.2 0.012 15.3 2.2 1.1 1 0 0 1 1 1 0 zinc-ribbons Fer2_4 PF13510.1 gi|385803399|ref|YP_005839799.1| - 0.021 14.6 2.4 0.024 14.4 1.7 1.1 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain zf-tcix PF14952.1 gi|385803399|ref|YP_005839799.1| - 0.059 12.7 0.8 0.089 12.1 0.6 1.3 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding zf-RanBP PF00641.13 gi|385803399|ref|YP_005839799.1| - 0.095 11.8 2.9 0.43 9.7 2.0 2.0 1 1 0 1 1 1 0 Zn-finger in Ran binding protein and others DZR PF12773.2 gi|385803399|ref|YP_005839799.1| - 0.23 11.2 5.8 0.35 10.7 4.0 1.5 1 1 0 1 1 1 0 Double zinc ribbon PolC_DP2 PF03833.8 gi|385803399|ref|YP_005839799.1| - 0.38 8.3 2.2 0.36 8.4 1.6 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-HIT PF04438.11 gi|385803399|ref|YP_005839799.1| - 0.78 9.4 5.9 0.68 9.6 0.6 2.2 2 0 0 2 2 2 0 HIT zinc finger zf-C4_Topoisom PF01396.14 gi|385803399|ref|YP_005839799.1| - 0.9 9.0 4.3 12 5.5 0.2 2.6 2 1 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Gin PF10764.4 gi|385803399|ref|YP_005839799.1| - 1.4 8.6 5.7 2.6 7.8 3.9 1.6 1 1 0 1 1 1 0 Inhibitor of sigma-G Gin HypA PF01155.14 gi|385803400|ref|YP_005839800.1| - 0.00044 19.9 0.9 0.00044 19.9 0.6 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|385803400|ref|YP_005839800.1| - 0.00064 19.4 0.7 0.00074 19.2 0.5 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|385803400|ref|YP_005839800.1| - 0.0035 16.4 2.5 0.006 15.7 1.7 1.5 1 1 0 1 1 1 1 zinc-ribbon domain zf-RING_4 PF14570.1 gi|385803400|ref|YP_005839800.1| - 0.0048 16.4 0.4 0.0063 16.0 0.3 1.2 1 0 0 1 1 1 1 RING/Ubox like zinc-binding domain DUF1936 PF09151.5 gi|385803400|ref|YP_005839800.1| - 0.0063 15.9 1.7 1.6 8.3 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1936) DnaJ_CXXCXGXG PF00684.14 gi|385803400|ref|YP_005839800.1| - 0.011 15.7 1.1 0.013 15.5 0.7 1.3 1 0 0 1 1 1 0 DnaJ central domain Prim_Zn_Ribbon PF08273.7 gi|385803400|ref|YP_005839800.1| - 0.013 15.6 1.0 0.76 9.8 0.1 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Nudix_N_2 PF14803.1 gi|385803400|ref|YP_005839800.1| - 0.017 14.8 1.9 1.5 8.6 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-C3HC4_3 PF13920.1 gi|385803400|ref|YP_005839800.1| - 0.019 14.6 0.3 0.021 14.4 0.2 1.1 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Zn-ribbon_8 PF09723.5 gi|385803400|ref|YP_005839800.1| - 0.019 14.8 4.2 0.1 12.5 3.1 1.8 1 1 1 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|385803400|ref|YP_005839800.1| - 0.029 14.2 1.9 0.063 13.1 1.3 1.6 1 1 0 1 1 1 0 Rubredoxin zf-IS66 PF13005.2 gi|385803400|ref|YP_005839800.1| - 0.03 14.2 6.1 0.14 12.1 0.6 2.1 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_2 PF13240.1 gi|385803400|ref|YP_005839800.1| - 0.037 13.5 4.3 0.093 12.2 3.0 1.7 1 1 0 1 1 1 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|385803400|ref|YP_005839800.1| - 0.056 12.6 3.0 0.14 11.3 0.2 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger RE_MamI PF09567.5 gi|385803400|ref|YP_005839800.1| - 0.059 12.4 0.1 0.06 12.3 0.1 1.0 1 0 0 1 1 1 0 MamI restriction endonuclease Zn_Tnp_IS1595 PF12760.2 gi|385803400|ref|YP_005839800.1| - 0.059 13.1 0.9 0.68 9.7 0.1 2.0 2 0 0 2 2 2 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|385803400|ref|YP_005839800.1| - 0.06 13.0 1.0 0.068 12.8 0.7 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|385803400|ref|YP_005839800.1| - 0.064 12.5 7.1 0.6 9.4 0.6 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding zf-ISL3 PF14690.1 gi|385803400|ref|YP_005839800.1| - 0.076 13.0 1.4 0.45 10.5 0.1 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 GCC2_GCC3 PF07699.8 gi|385803400|ref|YP_005839800.1| - 0.079 12.5 1.7 0.12 11.9 1.2 1.3 1 1 0 1 1 1 0 GCC2 and GCC3 zinc-ribbons_6 PF07191.7 gi|385803400|ref|YP_005839800.1| - 0.082 12.7 0.3 0.096 12.4 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons DNA_RNApol_7kD PF03604.8 gi|385803400|ref|YP_005839800.1| - 0.083 12.3 4.6 0.13 11.7 3.2 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF1272 PF06906.6 gi|385803400|ref|YP_005839800.1| - 0.088 12.6 2.2 0.14 11.9 1.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) Prok-RING_1 PF14446.1 gi|385803400|ref|YP_005839800.1| - 0.088 12.5 2.9 1.9 8.3 0.1 1.8 1 1 0 2 2 2 0 Prokaryotic RING finger family 1 DUF2072 PF09845.4 gi|385803400|ref|YP_005839800.1| - 0.091 12.6 2.0 0.11 12.4 1.4 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) NOB1_Zn_bind PF08772.6 gi|385803400|ref|YP_005839800.1| - 0.1 12.4 0.5 0.13 12.1 0.4 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like PhnA_Zn_Ribbon PF08274.7 gi|385803400|ref|YP_005839800.1| - 0.13 12.1 3.0 6.3 6.6 0.3 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF35_N PF12172.3 gi|385803400|ref|YP_005839800.1| - 0.14 12.1 3.2 3 7.8 0.3 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C4_Topoisom PF01396.14 gi|385803400|ref|YP_005839800.1| - 0.16 11.5 1.3 0.19 11.2 0.1 1.7 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Ogr_Delta PF04606.7 gi|385803400|ref|YP_005839800.1| - 0.18 11.4 0.7 0.18 11.4 0.5 1.8 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-MYND PF01753.13 gi|385803400|ref|YP_005839800.1| - 0.21 11.4 2.1 0.26 11.1 1.5 1.1 1 0 0 1 1 1 0 MYND finger A2L_zn_ribbon PF08792.5 gi|385803400|ref|YP_005839800.1| - 0.23 10.9 1.7 8.2 6.0 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain GFA PF04828.9 gi|385803400|ref|YP_005839800.1| - 0.27 11.2 2.4 6.9 6.6 0.1 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme PADR1 PF08063.7 gi|385803400|ref|YP_005839800.1| - 0.77 9.1 3.2 9 5.7 0.3 2.0 1 1 1 2 2 2 0 PADR1 (NUC008) domain YhfH PF14149.1 gi|385803400|ref|YP_005839800.1| - 0.8 9.5 4.0 9 6.1 0.3 2.1 1 1 1 2 2 2 0 YhfH-like protein Zn_ribbon_recom PF13408.1 gi|385803400|ref|YP_005839800.1| - 1.1 9.6 5.7 0.64 10.3 0.5 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain UPF0547 PF10571.4 gi|385803400|ref|YP_005839800.1| - 1.4 8.6 4.7 8.6 6.1 0.5 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Lar_restr_allev PF14354.1 gi|385803400|ref|YP_005839800.1| - 1.5 9.2 4.2 11 6.4 0.1 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar Peptidase_M28 PF04389.12 gi|385803401|ref|YP_005839801.1| - 6.6e-27 94.3 1.2 9.9e-27 93.8 0.8 1.3 1 0 0 1 1 1 1 Peptidase family M28 Peptidase_M20 PF01546.23 gi|385803401|ref|YP_005839801.1| - 2.7e-07 30.2 0.1 4e-07 29.7 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 PA PF02225.17 gi|385803401|ref|YP_005839801.1| - 1.8e-06 27.5 0.0 4.3e-06 26.3 0.0 1.7 2 0 0 2 2 2 1 PA domain Peptidase_M42 PF05343.9 gi|385803401|ref|YP_005839801.1| - 0.0011 17.8 0.1 0.0017 17.1 0.1 1.3 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase CPDase PF07823.6 gi|385803402|ref|YP_005839802.1| - 4.2e-25 88.4 0.1 6.6e-25 87.7 0.1 1.3 1 0 0 1 1 1 1 Cyclic phosphodiesterase-like protein 2_5_RNA_ligase2 PF13563.1 gi|385803402|ref|YP_005839802.1| - 5.1e-08 32.7 0.0 8.1e-08 32.1 0.0 1.4 1 1 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.11 gi|385803402|ref|YP_005839802.1| - 0.041 13.8 0.0 0.072 13.0 0.0 1.4 1 0 0 1 1 1 0 LigT like Phosphoesterase KRBA1 PF15287.1 gi|385803403|ref|YP_005839803.1| - 0.061 12.6 1.6 0.099 12.0 0.9 1.6 1 1 0 1 1 1 0 KRBA1 family repeat DUF4141 PF13605.1 gi|385803403|ref|YP_005839803.1| - 0.1 11.8 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4141) DUF4231 PF14015.1 gi|385803403|ref|YP_005839803.1| - 0.25 11.3 1.6 0.25 11.3 1.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) HCV_NS4a PF01006.15 gi|385803403|ref|YP_005839803.1| - 7.5 6.1 6.4 11 5.6 4.5 1.2 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a CARDB PF07705.6 gi|385803404|ref|YP_005839804.1| - 1.7e-13 50.4 16.3 9.2e-06 25.6 0.2 4.5 3 1 0 4 4 4 3 CARDB Transglut_C PF00927.17 gi|385803404|ref|YP_005839804.1| - 2.8e-07 30.5 0.5 0.0011 18.9 0.1 4.3 4 0 0 4 4 4 1 Transglutaminase family, C-terminal ig like domain NPCBM_assoc PF10633.4 gi|385803404|ref|YP_005839804.1| - 0.00012 22.0 0.9 0.00012 22.0 0.6 5.7 5 2 0 5 5 5 2 NPCBM-associated, NEW3 domain of alpha-galactosidase ABC_tran PF00005.22 gi|385803405|ref|YP_005839805.1| - 4.4e-34 117.7 0.0 6.1e-34 117.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385803405|ref|YP_005839805.1| - 8.8e-11 42.3 0.1 5.6e-05 23.2 0.0 2.3 2 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|385803405|ref|YP_005839805.1| - 9.1e-05 21.9 0.1 0.00016 21.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|385803405|ref|YP_005839805.1| - 9.5e-05 22.5 0.1 0.00053 20.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|385803405|ref|YP_005839805.1| - 0.00034 19.8 0.0 0.00055 19.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|385803405|ref|YP_005839805.1| - 0.00068 19.6 0.2 0.0019 18.2 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|385803405|ref|YP_005839805.1| - 0.00095 19.9 0.1 0.0021 18.8 0.1 1.7 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|385803405|ref|YP_005839805.1| - 0.0041 16.3 0.1 0.73 9.0 0.1 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|385803405|ref|YP_005839805.1| - 0.006 16.0 0.1 0.14 11.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|385803405|ref|YP_005839805.1| - 0.006 16.1 0.1 0.091 12.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|385803405|ref|YP_005839805.1| - 0.015 14.7 0.0 0.026 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain MobB PF03205.9 gi|385803405|ref|YP_005839805.1| - 0.016 14.8 0.0 0.061 13.0 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|385803405|ref|YP_005839805.1| - 0.026 14.4 0.1 0.043 13.7 0.1 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.1 gi|385803405|ref|YP_005839805.1| - 0.027 14.7 0.0 0.089 13.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|385803405|ref|YP_005839805.1| - 0.03 13.2 0.0 0.046 12.6 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.1 gi|385803405|ref|YP_005839805.1| - 0.03 14.2 0.0 0.052 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|385803405|ref|YP_005839805.1| - 0.033 14.5 0.1 0.05 13.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|385803405|ref|YP_005839805.1| - 0.064 12.6 0.0 0.14 11.5 0.0 1.5 2 0 0 2 2 1 0 IstB-like ATP binding protein AAA_19 PF13245.1 gi|385803405|ref|YP_005839805.1| - 0.082 12.6 0.2 0.32 10.7 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain NTPase_1 PF03266.10 gi|385803405|ref|YP_005839805.1| - 0.087 12.5 0.1 7.4 6.2 0.0 2.2 2 0 0 2 2 2 0 NTPase Arch_ATPase PF01637.13 gi|385803405|ref|YP_005839805.1| - 0.14 11.8 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase Dynamin_N PF00350.18 gi|385803405|ref|YP_005839805.1| - 0.14 11.9 0.2 0.43 10.3 0.0 1.9 2 0 0 2 2 2 0 Dynamin family IIGP PF05049.8 gi|385803405|ref|YP_005839805.1| - 0.14 10.8 0.0 0.21 10.3 0.0 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) MacB_PCD PF12704.2 gi|385803406|ref|YP_005839806.1| - 1.6e-22 80.2 6.9 1.6e-22 80.2 4.8 2.5 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|385803406|ref|YP_005839806.1| - 5.9e-17 61.5 11.8 5.9e-17 61.5 8.2 2.1 2 0 0 2 2 2 1 FtsX-like permease family TauE PF01925.14 gi|385803406|ref|YP_005839806.1| - 0.00043 19.8 13.1 0.00043 19.8 9.1 2.2 2 0 0 2 2 2 2 Sulfite exporter TauE/SafE RPE65 PF03055.10 gi|385803407|ref|YP_005839807.1| - 1.9e-109 366.4 0.0 2.1e-109 366.3 0.0 1.0 1 0 0 1 1 1 1 Retinal pigment epithelial membrane protein PHP PF02811.14 gi|385803408|ref|YP_005839808.1| - 2.8e-12 46.7 0.1 6.6e-12 45.5 0.1 1.6 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|385803408|ref|YP_005839808.1| - 0.0028 17.1 0.0 0.0087 15.5 0.0 1.8 1 0 0 1 1 1 1 PHP-associated DUF2075 PF09848.4 gi|385803409|ref|YP_005839809.1| - 5.6e-106 354.4 0.2 7.3e-106 354.0 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.1 gi|385803409|ref|YP_005839809.1| - 7.4e-08 32.0 0.0 1.7e-07 30.8 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain KaiC PF06745.8 gi|385803409|ref|YP_005839809.1| - 3e-06 26.5 0.2 6.9e-06 25.3 0.1 1.6 1 0 0 1 1 1 1 KaiC ResIII PF04851.10 gi|385803409|ref|YP_005839809.1| - 5.1e-06 26.4 0.5 0.023 14.5 0.0 2.9 1 1 1 2 2 2 2 Type III restriction enzyme, res subunit AAA PF00004.24 gi|385803409|ref|YP_005839809.1| - 1.8e-05 24.9 0.3 0.0001 22.5 0.2 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|385803409|ref|YP_005839809.1| - 6.8e-05 23.0 0.1 0.0005 20.2 0.1 2.5 1 1 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|385803409|ref|YP_005839809.1| - 0.0017 16.7 0.0 0.003 15.9 0.0 1.3 1 0 0 1 1 1 1 GvpD gas vesicle protein IstB_IS21 PF01695.12 gi|385803409|ref|YP_005839809.1| - 0.0022 17.4 0.0 0.0042 16.5 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_11 PF13086.1 gi|385803409|ref|YP_005839809.1| - 0.0089 15.6 0.1 0.039 13.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain UvrD-helicase PF00580.16 gi|385803409|ref|YP_005839809.1| - 0.01 15.1 1.5 0.017 14.4 0.0 1.9 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain AAA_30 PF13604.1 gi|385803409|ref|YP_005839809.1| - 0.015 14.8 0.0 0.026 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Torsin PF06309.6 gi|385803409|ref|YP_005839809.1| - 0.022 14.6 0.0 0.075 12.9 0.0 2.0 1 0 0 1 1 1 0 Torsin TIP49 PF06068.8 gi|385803409|ref|YP_005839809.1| - 0.022 13.4 0.0 0.038 12.6 0.0 1.3 1 0 0 1 1 1 0 TIP49 C-terminus Sigma54_activat PF00158.21 gi|385803409|ref|YP_005839809.1| - 0.032 13.6 0.0 0.1 12.0 0.0 1.9 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_14 PF13173.1 gi|385803409|ref|YP_005839809.1| - 0.033 14.0 0.3 0.91 9.4 0.2 2.8 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|385803409|ref|YP_005839809.1| - 0.044 13.1 0.0 0.13 11.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|385803409|ref|YP_005839809.1| - 0.049 13.6 0.0 0.13 12.2 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.1 gi|385803409|ref|YP_005839809.1| - 0.054 13.4 0.0 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|385803409|ref|YP_005839809.1| - 0.062 13.6 0.3 0.77 10.0 0.0 2.8 2 1 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|385803409|ref|YP_005839809.1| - 0.069 12.0 0.0 0.17 10.7 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein Mg_chelatase PF01078.16 gi|385803409|ref|YP_005839809.1| - 0.11 11.6 0.0 0.3 10.2 0.0 1.6 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI NUDIX PF00293.23 gi|385803410|ref|YP_005839810.1| - 6.1e-21 74.4 0.1 7.1e-21 74.2 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|385803410|ref|YP_005839810.1| - 0.009 15.4 0.0 0.014 14.8 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain Pterin_4a PF01329.14 gi|385803411|ref|YP_005839811.1| - 1.1e-28 98.8 1.4 1.2e-28 98.6 1.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase Alpha-amylase PF00128.19 gi|385803412|ref|YP_005839812.1| - 1.5e-47 162.5 0.0 2.1e-47 162.0 0.0 1.1 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Exonuc_VII_S PF02609.11 gi|385803413|ref|YP_005839813.1| - 2.5e-09 36.7 2.1 3.1e-09 36.4 1.4 1.1 1 0 0 1 1 1 1 Exonuclease VII small subunit UBN2_2 PF14227.1 gi|385803413|ref|YP_005839813.1| - 0.084 12.4 0.1 0.1 12.1 0.1 1.2 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type Exonuc_VII_L PF02601.10 gi|385803414|ref|YP_005839814.1| - 4e-51 174.0 2.3 5.5e-51 173.6 1.6 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit tRNA_anti_2 PF13742.1 gi|385803414|ref|YP_005839814.1| - 5.7e-20 71.0 0.1 1.9e-19 69.3 0.0 1.9 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain FbpA PF05833.6 gi|385803414|ref|YP_005839814.1| - 0.0017 16.9 0.2 0.0028 16.2 0.1 1.3 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF3584 PF12128.3 gi|385803414|ref|YP_005839814.1| - 0.013 12.9 5.0 0.018 12.3 3.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) tRNA_anti-codon PF01336.20 gi|385803414|ref|YP_005839814.1| - 0.013 15.3 0.0 0.026 14.3 0.0 1.5 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain CLP_protease PF00574.18 gi|385803414|ref|YP_005839814.1| - 0.015 15.0 0.4 0.082 12.5 0.2 2.2 1 1 0 1 1 1 0 Clp protease Rho_Binding PF08912.6 gi|385803414|ref|YP_005839814.1| - 0.12 12.7 5.0 0.086 13.1 0.8 2.3 1 1 1 2 2 2 0 Rho Binding Kinetocho_Slk19 PF12709.2 gi|385803414|ref|YP_005839814.1| - 0.25 11.4 3.8 0.67 10.0 2.6 1.7 1 0 0 1 1 1 0 Central kinetochore-associated DUF1311 PF07007.7 gi|385803414|ref|YP_005839814.1| - 0.76 9.9 5.0 16 5.6 0.3 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1311) DUF1611 PF07755.6 gi|385803415|ref|YP_005839815.1| - 9.6e-112 372.5 0.5 1.1e-111 372.2 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1611) AAA_26 PF13500.1 gi|385803415|ref|YP_005839815.1| - 0.02 14.5 0.4 0.74 9.3 0.0 2.5 2 1 0 3 3 3 0 AAA domain CbiA PF01656.18 gi|385803415|ref|YP_005839815.1| - 0.063 12.6 0.4 0.53 9.6 0.3 2.1 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Endonuclease_5 PF04493.9 gi|385803415|ref|YP_005839815.1| - 0.071 12.4 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Endonuclease V MR_MLE PF01188.16 gi|385803416|ref|YP_005839816.1| - 6.1e-15 55.5 2.5 6.8e-15 55.3 0.7 2.0 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|385803416|ref|YP_005839816.1| - 2.8e-14 53.0 0.2 2e-13 50.2 0.1 2.3 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|385803416|ref|YP_005839816.1| - 1.4e-11 44.4 0.1 4.6e-11 42.7 0.0 1.8 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Lactamase_B_2 PF12706.2 gi|385803417|ref|YP_005839817.1| - 1.7e-27 96.2 0.1 2.3e-27 95.7 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|385803417|ref|YP_005839817.1| - 1.1e-14 54.5 0.1 9.8e-14 51.4 0.1 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|385803417|ref|YP_005839817.1| - 0.0017 18.1 0.0 0.004 16.8 0.0 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_4 PF13691.1 gi|385803417|ref|YP_005839817.1| - 0.05 13.0 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 tRNase Z endonuclease MIT PF04212.13 gi|385803418|ref|YP_005839818.1| - 0.0055 16.5 3.3 0.039 13.8 0.9 3.5 2 0 0 2 2 2 1 MIT (microtubule interacting and transport) domain DUF1771 PF08590.5 gi|385803418|ref|YP_005839818.1| - 3.2 7.8 10.0 1.6 8.7 0.4 3.7 4 0 0 4 4 4 0 Domain of unknown function (DUF1771) Rhodanese PF00581.15 gi|385803419|ref|YP_005839819.1| - 7.1e-30 103.6 0.0 3.3e-14 53.1 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain NESP55 PF06390.7 gi|385803420|ref|YP_005839820.1| - 0.017 14.5 3.0 0.017 14.4 2.1 1.2 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) Peptidase_S49 PF01343.13 gi|385803421|ref|YP_005839821.1| - 2.8e-41 140.8 0.0 4.6e-41 140.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S49 DUF1009 PF06230.6 gi|385803421|ref|YP_005839821.1| - 0.0058 16.0 0.0 0.0099 15.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1009) SDH_sah PF01972.11 gi|385803421|ref|YP_005839821.1| - 0.011 14.5 0.0 0.02 13.6 0.0 1.4 1 0 0 1 1 1 0 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|385803421|ref|YP_005839821.1| - 0.012 15.2 0.0 3.8 7.1 0.0 2.4 2 0 0 2 2 2 0 Clp protease DICT PF10069.4 gi|529167404|ref|YP_005839822.2| - 1.6e-12 47.0 0.0 2.4e-12 46.4 0.0 1.3 1 0 0 1 1 1 1 Sensory domain found in DIguanylate Cyclases & Two-component systems zf-ribbon_3 PF13248.1 gi|385803423|ref|YP_005839823.1| - 2.9e-05 23.1 2.9 3.8e-05 22.7 2.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|385803423|ref|YP_005839823.1| - 5.4e-05 22.9 1.5 6.6e-05 22.6 1.1 1.1 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|385803423|ref|YP_005839823.1| - 0.0036 16.7 5.1 0.0054 16.1 3.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|385803423|ref|YP_005839823.1| - 0.0063 16.4 4.3 1.6 8.7 3.0 2.1 1 1 1 2 2 2 2 Zinc ribbon domain Prok-RING_1 PF14446.1 gi|385803423|ref|YP_005839823.1| - 0.007 16.0 0.8 0.008 15.8 0.6 1.1 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 HypA PF01155.14 gi|385803423|ref|YP_005839823.1| - 0.021 14.5 0.5 0.024 14.3 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Lar_restr_allev PF14354.1 gi|385803423|ref|YP_005839823.1| - 0.029 14.6 2.6 1.3 9.3 0.2 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar TFIIS_C PF01096.13 gi|385803423|ref|YP_005839823.1| - 0.032 13.8 0.6 2.1 8.0 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_5 PF13719.1 gi|385803423|ref|YP_005839823.1| - 0.048 13.2 1.0 0.97 9.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|385803423|ref|YP_005839823.1| - 0.049 13.3 0.3 0.054 13.1 0.2 1.1 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-RING_5 PF14634.1 gi|385803423|ref|YP_005839823.1| - 0.057 13.1 1.2 0.077 12.7 0.8 1.2 1 0 0 1 1 1 0 zinc-RING finger domain DnaJ_CXXCXGXG PF00684.14 gi|385803423|ref|YP_005839823.1| - 0.061 13.3 0.6 0.082 12.9 0.4 1.3 1 0 0 1 1 1 0 DnaJ central domain zinc_ribbon_4 PF13717.1 gi|385803423|ref|YP_005839823.1| - 0.07 12.8 1.0 1.2 8.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|385803423|ref|YP_005839823.1| - 0.079 12.7 0.5 0.095 12.4 0.3 1.1 1 0 0 1 1 1 0 zinc-ribbons Stc1 PF12898.2 gi|385803423|ref|YP_005839823.1| - 0.085 12.9 0.1 0.086 12.9 0.1 1.1 1 0 0 1 1 1 0 Stc1 domain zf-trcl PF13451.1 gi|385803423|ref|YP_005839823.1| - 0.085 12.4 1.6 1.3 8.7 0.1 2.1 2 0 0 2 2 2 0 Probable zinc-binding domain Ribosomal_L37e PF01907.14 gi|385803423|ref|YP_005839823.1| - 0.1 12.3 0.8 0.15 11.8 0.5 1.3 1 1 0 1 1 1 0 Ribosomal protein L37e DNA_RNApol_7kD PF03604.8 gi|385803423|ref|YP_005839823.1| - 0.12 11.8 1.5 0.78 9.2 0.0 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.2 gi|385803423|ref|YP_005839823.1| - 0.14 11.9 2.4 0.95 9.3 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|385803423|ref|YP_005839823.1| - 0.22 10.9 4.3 3.4 7.2 3.0 2.1 1 1 0 1 1 1 0 A2L zinc ribbon domain UPF0547 PF10571.4 gi|385803423|ref|YP_005839823.1| - 0.38 10.5 3.6 12 5.7 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Elf1 PF05129.8 gi|385803423|ref|YP_005839823.1| - 0.39 10.4 1.9 2.5 7.8 1.8 1.8 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like DUF1272 PF06906.6 gi|385803423|ref|YP_005839823.1| - 0.48 10.3 5.3 1.1 9.1 3.7 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) Nudix_N_2 PF14803.1 gi|385803423|ref|YP_005839823.1| - 0.49 10.1 2.8 16 5.2 1.0 2.4 2 1 1 3 3 2 0 Nudix N-terminal DUF35_N PF12172.3 gi|385803423|ref|YP_005839823.1| - 0.53 10.2 2.3 1.1 9.2 1.6 1.5 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C4_Topoisom PF01396.14 gi|385803423|ref|YP_005839823.1| - 0.66 9.5 3.3 1.3 8.5 0.2 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger RNA_POL_M_15KD PF02150.11 gi|385803423|ref|YP_005839823.1| - 1 9.1 5.2 2.8 7.7 0.3 2.4 2 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-IS66 PF13005.2 gi|385803423|ref|YP_005839823.1| - 1 9.3 6.6 2.3 8.2 1.2 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Sgf11 PF08209.6 gi|385803423|ref|YP_005839823.1| - 1.7 7.9 4.9 2.5 7.4 0.2 2.1 1 1 1 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-Mss51 PF13824.1 gi|385803423|ref|YP_005839823.1| - 2.7 7.9 5.2 4.3 7.2 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 TF_Zn_Ribbon PF08271.7 gi|385803423|ref|YP_005839823.1| - 2.9 7.2 6.0 5 6.5 0.6 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding zf-RING_3 PF14369.1 gi|385803423|ref|YP_005839823.1| - 5 7.2 6.0 26 4.9 4.1 2.0 1 1 0 1 1 1 0 zinc-finger MoCF_biosynth PF00994.19 gi|385803424|ref|YP_005839824.1| - 1.6e-32 111.9 0.3 2.4e-32 111.3 0.2 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain HAD PF12710.2 gi|385803425|ref|YP_005839825.1| - 7.5e-13 49.0 0.2 1.1e-12 48.5 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|385803425|ref|YP_005839825.1| - 0.039 14.3 0.0 0.089 13.1 0.0 1.7 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase SecA_SW PF07516.8 gi|385803425|ref|YP_005839825.1| - 0.069 12.8 0.4 0.13 11.9 0.3 1.6 1 1 0 1 1 1 0 SecA Wing and Scaffold domain DDE_5 PF13546.1 gi|385803427|ref|YP_005839827.1| - 5.5e-20 71.3 0.0 8.7e-20 70.6 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.16 gi|385803427|ref|YP_005839827.1| - 2.8e-17 62.9 0.4 5.2e-17 62.0 0.1 1.6 2 1 0 2 2 2 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|385803427|ref|YP_005839827.1| - 0.00011 21.3 0.5 0.00045 19.3 0.3 1.8 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_6 PF13751.1 gi|385803427|ref|YP_005839827.1| - 0.01 15.8 0.0 0.035 14.1 0.0 1.9 2 0 0 2 2 2 0 Transposase DDE domain Pro_CA PF00484.14 gi|385803428|ref|YP_005839828.1| - 1.1e-24 87.2 0.1 1.7e-24 86.5 0.0 1.4 2 0 0 2 2 2 1 Carbonic anhydrase Lbh PF15317.1 gi|385803428|ref|YP_005839828.1| - 0.07 13.3 0.0 0.21 11.8 0.0 1.8 1 0 0 1 1 1 0 Cardiac transcription factor regulator, Developmental protein Amidohydro_1 PF01979.15 gi|385803429|ref|YP_005839829.1| - 6.2e-40 137.8 0.7 7.8e-40 137.5 0.5 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|385803429|ref|YP_005839829.1| - 1.2e-16 61.6 0.1 7.2e-16 59.0 0.1 2.0 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|385803429|ref|YP_005839829.1| - 9.7e-16 57.9 8.0 3.5e-15 56.1 2.1 2.2 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|385803429|ref|YP_005839829.1| - 3.4e-12 46.0 0.4 1.1e-11 44.3 0.3 2.0 1 0 0 1 1 1 1 Amidohydrolase Baculo_LEF5_C PF11792.3 gi|385803429|ref|YP_005839829.1| - 0.085 12.2 0.1 0.21 10.9 0.1 1.6 1 0 0 1 1 1 0 Baculoviridae late expression factor 5 C-terminal domain ABC_tran PF00005.22 gi|385803430|ref|YP_005839830.1| - 6.4e-46 156.0 0.1 1.5e-29 102.9 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|385803430|ref|YP_005839830.1| - 1.6e-14 54.5 0.4 4.7e-13 49.7 0.3 2.4 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|385803430|ref|YP_005839830.1| - 1.1e-05 24.6 0.1 0.051 12.6 0.0 2.2 1 1 1 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|385803430|ref|YP_005839830.1| - 0.00025 20.5 0.4 0.95 8.8 0.0 3.3 3 0 0 3 3 3 1 AAA-like domain AAA_16 PF13191.1 gi|385803430|ref|YP_005839830.1| - 0.00026 21.0 0.4 0.12 12.3 0.0 3.0 3 0 0 3 3 3 1 AAA ATPase domain Bac_DnaA PF00308.13 gi|385803430|ref|YP_005839830.1| - 0.0027 17.3 0.1 0.007 16.0 0.1 1.7 1 0 0 1 1 1 1 Bacterial dnaA protein SMC_N PF02463.14 gi|385803430|ref|YP_005839830.1| - 0.0044 16.2 0.7 2 7.5 0.0 2.5 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|385803430|ref|YP_005839830.1| - 0.0063 16.6 0.1 4.4 7.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|385803430|ref|YP_005839830.1| - 0.014 14.8 0.1 0.014 14.8 0.1 2.0 3 0 0 3 3 3 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|385803430|ref|YP_005839830.1| - 0.035 13.2 1.2 0.12 11.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|385803430|ref|YP_005839830.1| - 0.087 13.1 0.0 0.18 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|385803430|ref|YP_005839830.1| - 1.1 8.5 3.2 1.1 8.6 0.1 2.4 3 0 0 3 3 3 0 IstB-like ATP binding protein BPD_transp_2 PF02653.11 gi|385803431|ref|YP_005839831.1| - 1.4e-36 125.8 35.0 1.4e-36 125.8 24.3 1.7 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ASF1_hist_chap PF04729.8 gi|385803431|ref|YP_005839831.1| - 0.17 11.5 0.0 0.26 10.9 0.0 1.2 1 0 0 1 1 1 0 ASF1 like histone chaperone BPD_transp_2 PF02653.11 gi|385803432|ref|YP_005839832.1| - 5.2e-40 137.1 30.8 7e-40 136.6 21.4 1.2 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component Bmp PF02608.9 gi|385803433|ref|YP_005839833.1| - 4.3e-41 140.6 0.0 5.9e-41 140.1 0.0 1.0 1 0 0 1 1 1 1 Basic membrane protein TAT_signal PF10518.4 gi|385803433|ref|YP_005839833.1| - 0.13 12.3 2.2 0.33 11.0 1.6 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Fer2_2 PF01799.15 gi|385803434|ref|YP_005839834.1| - 2.3e-28 97.8 1.0 2.9e-28 97.5 0.0 1.6 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2_3 PF13085.1 gi|385803434|ref|YP_005839834.1| - 8.3e-06 25.6 0.1 1.3e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2 PF00111.22 gi|385803434|ref|YP_005839834.1| - 4.6e-05 23.0 0.5 4.6e-05 23.0 0.4 1.8 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Ald_Xan_dh_C2 PF02738.13 gi|385803435|ref|YP_005839835.1| - 4.8e-118 394.8 0.0 6e-118 394.5 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|385803435|ref|YP_005839835.1| - 2.6e-22 79.0 0.0 6.2e-22 77.7 0.0 1.7 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FAD_binding_5 PF00941.16 gi|385803436|ref|YP_005839836.1| - 3.1e-43 147.1 0.0 4.2e-43 146.7 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|385803436|ref|YP_005839836.1| - 4.4e-12 45.8 0.1 7.5e-12 45.1 0.1 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Xan_ur_permease PF00860.15 gi|385803437|ref|YP_005839837.1| - 1.2e-92 310.4 45.0 1.2e-92 310.4 31.2 1.5 2 0 0 2 2 2 1 Permease family OHCU_decarbox PF09349.5 gi|385803438|ref|YP_005839838.1| - 4.4e-50 170.0 3.4 4.9e-50 169.9 2.4 1.0 1 0 0 1 1 1 1 OHCU decarboxylase Atg31 PF09795.4 gi|385803438|ref|YP_005839838.1| - 0.025 14.2 0.5 0.041 13.5 0.3 1.4 1 0 0 1 1 1 0 Autophagy-related protein 31 DUF4558 PF15104.1 gi|385803438|ref|YP_005839838.1| - 0.12 12.3 1.7 0.35 10.8 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4558) Uricase PF01014.13 gi|385803439|ref|YP_005839839.1| - 8.7e-37 126.2 0.0 2.8e-18 66.3 0.0 2.0 2 0 0 2 2 2 2 Uricase FolB PF02152.13 gi|385803439|ref|YP_005839839.1| - 0.0035 17.4 0.0 1.1 9.4 0.0 2.2 2 0 0 2 2 2 2 Dihydroneopterin aldolase Transthyretin PF00576.16 gi|385803440|ref|YP_005839840.1| - 5.2e-36 122.9 0.0 5.8e-36 122.7 0.0 1.0 1 0 0 1 1 1 1 HIUase/Transthyretin family CarboxypepD_reg PF13620.1 gi|385803440|ref|YP_005839840.1| - 0.00099 19.1 0.2 0.0024 17.9 0.1 1.7 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain Peptidase_M20 PF01546.23 gi|385803441|ref|YP_005839841.1| - 7.6e-20 71.2 0.2 1.1e-19 70.7 0.2 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|385803441|ref|YP_005839841.1| - 5.8e-12 45.3 0.6 1.1e-11 44.4 0.4 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|385803441|ref|YP_005839841.1| - 7.7e-08 32.2 0.0 1.4e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 Amidohydro_1 PF01979.15 gi|385803442|ref|YP_005839842.1| - 1.9e-45 155.9 1.3 2.4e-45 155.6 0.9 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|385803442|ref|YP_005839842.1| - 4.7e-15 56.3 2.1 8.2e-15 55.5 1.4 1.4 1 1 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|385803442|ref|YP_005839842.1| - 0.0015 17.5 0.0 0.0036 16.2 0.0 1.6 2 0 0 2 2 2 1 Adenosine/AMP deaminase Amidohydro_5 PF13594.1 gi|385803442|ref|YP_005839842.1| - 0.0026 17.5 0.5 0.0026 17.5 0.3 2.5 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|385803443|ref|YP_005839843.1| - 6.4e-27 95.2 3.8 8.1e-27 94.9 2.7 1.1 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|385803443|ref|YP_005839843.1| - 3.5e-16 59.7 0.2 2.7e-14 53.5 0.0 3.1 2 1 0 2 2 2 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|385803443|ref|YP_005839843.1| - 1.1e-09 37.9 0.9 1.1e-09 37.9 0.6 2.3 3 0 0 3 3 3 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|385803443|ref|YP_005839843.1| - 1.8e-09 37.3 1.5 1.8e-05 24.1 0.1 2.9 1 1 0 2 2 2 2 Amidohydrolase family DUF3830 PF12903.2 gi|385803444|ref|YP_005839844.1| - 3.1e-38 130.4 0.0 3.7e-38 130.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3830) Pribosyltran PF00156.22 gi|385803445|ref|YP_005839845.1| - 1.7e-19 69.8 0.4 2.2e-19 69.4 0.3 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|385803445|ref|YP_005839845.1| - 0.0082 15.3 0.1 0.013 14.7 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|385803445|ref|YP_005839845.1| - 0.077 12.2 0.2 0.11 11.7 0.1 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase 2-Hacid_dh_C PF02826.14 gi|385803447|ref|YP_005839847.1| - 1.1e-49 168.0 0.0 5.4e-48 162.4 0.0 2.2 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|385803447|ref|YP_005839847.1| - 3.5e-18 65.3 0.0 4.2e-18 65.0 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VWA PF00092.23 gi|385803450|ref|YP_005839850.1| - 3.1e-11 43.3 0.2 3.7e-11 43.0 0.1 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.1 gi|385803450|ref|YP_005839850.1| - 4.5e-11 43.1 1.9 8.2e-11 42.3 1.3 1.5 1 1 0 1 1 1 1 von Willebrand factor type A domain vWA-TerF-like PF10138.4 gi|385803450|ref|YP_005839850.1| - 0.00075 19.3 1.3 0.056 13.2 0.9 2.3 1 1 0 1 1 1 1 vWA found in TerF C terminus VWA_CoxE PF05762.9 gi|385803450|ref|YP_005839850.1| - 0.035 13.2 0.5 0.1 11.6 0.3 1.9 1 1 0 1 1 1 0 VWA domain containing CoxE-like protein DUF1194 PF06707.6 gi|385803450|ref|YP_005839850.1| - 0.041 12.8 0.1 0.041 12.8 0.1 2.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1194) DUF973 PF06157.6 gi|385803452|ref|YP_005839852.1| - 0.11 11.3 3.6 0.12 11.2 2.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF973) 2TM PF13239.1 gi|385803452|ref|YP_005839852.1| - 2.5 8.2 4.4 0.79 9.8 1.2 1.7 1 1 0 1 1 1 0 2TM domain Big_3_4 PF13754.1 gi|385803453|ref|YP_005839853.1| - 0.05 13.9 1.3 0.05 13.9 0.9 2.9 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 3) Nterm_IS4 PF13006.2 gi|385803454|ref|YP_005839854.1| - 0.0065 16.4 0.1 0.0087 16.0 0.1 1.2 1 0 0 1 1 1 1 Insertion element 4 transposase N-terminal DUF1129 PF06570.6 gi|385803454|ref|YP_005839854.1| - 0.048 12.9 4.0 0.053 12.8 2.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) BPD_transp_1 PF00528.17 gi|385803454|ref|YP_005839854.1| - 0.33 10.4 4.9 0.38 10.2 3.4 1.1 1 0 0 1 1 1 0 Binding-protein-dependent transport system inner membrane component 2TM PF13239.1 gi|385803454|ref|YP_005839854.1| - 3.4 7.7 6.3 12 6.0 4.3 1.9 1 1 0 1 1 1 0 2TM domain DUF3353 PF11833.3 gi|385803457|ref|YP_005839857.1| - 0.042 13.3 3.6 0.055 12.9 2.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) SdpI PF13630.1 gi|385803457|ref|YP_005839857.1| - 0.12 12.1 1.1 0.16 11.6 0.3 1.6 1 1 1 2 2 2 0 SdpI/YhfL protein family Yip1 PF04893.12 gi|385803457|ref|YP_005839857.1| - 0.6 9.5 5.8 2.2 7.7 4.0 1.8 1 1 0 1 1 1 0 Yip1 domain DUF1469 PF07332.6 gi|385803457|ref|YP_005839857.1| - 0.71 9.6 4.3 0.38 10.5 1.4 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1469) YiaAB PF05360.9 gi|385803457|ref|YP_005839857.1| - 7.1 6.2 9.8 0.72 9.4 2.1 2.2 2 0 0 2 2 2 0 yiaA/B two helix domain DUF2721 PF11026.3 gi|385803457|ref|YP_005839857.1| - 9.7 5.8 9.9 1.7 8.2 3.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2721) DRP PF06044.7 gi|385803458|ref|YP_005839858.1| - 1.4e-11 43.8 1.1 1.7e-11 43.6 0.8 1.1 1 0 0 1 1 1 1 Dam-replacing family Fic PF02661.13 gi|385803458|ref|YP_005839858.1| - 0.078 13.6 0.4 0.11 13.1 0.3 1.2 1 0 0 1 1 1 0 Fic/DOC family DUF3221 PF11518.3 gi|385803458|ref|YP_005839858.1| - 0.12 12.0 1.0 0.22 11.1 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3221) DDE_Tnp_IS1595 PF12762.2 gi|385803461|ref|YP_005839861.1| - 1.9e-23 82.9 0.0 3e-23 82.3 0.0 1.2 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.2 gi|385803461|ref|YP_005839861.1| - 1.5e-10 40.6 4.8 2.9e-10 39.7 3.3 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|385803461|ref|YP_005839861.1| - 1.3e-05 24.5 6.4 3.3e-05 23.2 4.5 1.7 1 0 0 1 1 1 1 InsA N-terminal domain DUF2089 PF09862.4 gi|385803461|ref|YP_005839861.1| - 0.026 14.3 0.0 0.04 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) Auxin_inducible PF02519.9 gi|385803461|ref|YP_005839861.1| - 0.035 14.1 0.0 0.063 13.3 0.0 1.3 1 0 0 1 1 1 0 Auxin responsive protein zf-ISL3 PF14690.1 gi|385803461|ref|YP_005839861.1| - 0.11 12.6 8.7 0.19 11.7 0.7 2.8 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-Dof PF02701.10 gi|385803461|ref|YP_005839861.1| - 0.11 12.4 3.8 0.2 11.5 2.6 1.4 1 0 0 1 1 1 0 Dof domain, zinc finger Zn-ribbon_8 PF09723.5 gi|385803461|ref|YP_005839861.1| - 0.55 10.2 4.7 6.7 6.7 0.4 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zf-C2H2_6 PF13912.1 gi|385803461|ref|YP_005839861.1| - 5 7.1 6.8 1.1 9.2 0.2 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger AAA_23 PF13476.1 gi|385803463|ref|YP_005839863.1| - 1.2e-13 51.8 22.5 1.2e-13 51.8 15.6 3.3 1 1 0 2 2 1 1 AAA domain SMC_N PF02463.14 gi|385803463|ref|YP_005839863.1| - 5.7e-08 32.2 0.1 5.7e-08 32.2 0.1 2.3 2 1 0 2 2 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|385803463|ref|YP_005839863.1| - 8.1e-06 25.2 0.0 1.5e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|385803463|ref|YP_005839863.1| - 5.6e-05 21.8 37.1 0.019 13.4 4.6 3.4 3 1 0 3 3 3 3 AAA domain AAA_15 PF13175.1 gi|385803463|ref|YP_005839863.1| - 0.00012 21.2 20.0 0.00012 21.2 13.9 3.4 2 2 0 2 2 1 1 AAA ATPase domain AAA_21 PF13304.1 gi|385803463|ref|YP_005839863.1| - 0.00057 19.9 18.0 0.0031 17.5 4.8 3.1 2 1 0 2 2 2 2 AAA domain Baculo_PEP_C PF04513.7 gi|385803463|ref|YP_005839863.1| - 0.015 15.1 12.6 0.44 10.3 0.4 4.0 2 2 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF258 PF03193.11 gi|385803463|ref|YP_005839863.1| - 0.022 13.9 0.0 0.082 12.0 0.0 2.0 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|385803463|ref|YP_005839863.1| - 0.031 14.1 0.1 0.13 12.1 0.0 2.1 2 0 0 2 2 2 0 Putative exonuclease SbcCD, C subunit DUF1786 PF08735.5 gi|385803463|ref|YP_005839863.1| - 0.053 12.6 2.7 0.1 11.7 1.8 1.4 1 0 0 1 1 1 0 Putative pyruvate format-lyase activating enzyme (DUF1786) ABC_tran PF00005.22 gi|385803463|ref|YP_005839863.1| - 0.06 13.6 0.0 0.06 13.6 0.0 3.7 3 1 0 3 3 3 0 ABC transporter V_ATPase_I PF01496.14 gi|385803463|ref|YP_005839863.1| - 0.14 10.0 24.9 0.2 9.4 8.6 2.3 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family IncA PF04156.9 gi|385803463|ref|YP_005839863.1| - 1.1 8.7 38.3 0.078 12.5 5.0 3.2 2 1 1 3 3 3 0 IncA protein Reo_sigmaC PF04582.7 gi|385803463|ref|YP_005839863.1| - 1.3 8.1 3.2 6.8 5.7 0.2 2.3 2 0 0 2 2 2 0 Reovirus sigma C capsid protein WXG100 PF06013.7 gi|385803463|ref|YP_005839863.1| - 2 8.4 10.8 2.9 7.9 0.2 4.8 4 1 1 6 6 6 0 Proteins of 100 residues with WXG ResIII PF04851.10 gi|385803465|ref|YP_005839865.1| - 3.9e-23 82.2 0.7 9.8e-23 80.9 0.0 2.1 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|385803465|ref|YP_005839865.1| - 5.2e-11 42.2 0.1 1.2e-10 41.0 0.1 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|385803465|ref|YP_005839865.1| - 7e-10 38.6 0.0 3.1e-09 36.5 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|385803465|ref|YP_005839865.1| - 1.9e-06 26.8 0.0 1e-05 24.5 0.0 2.1 1 1 1 2 2 2 1 SNF2 family N-terminal domain Helicase_C_2 PF13307.1 gi|385803465|ref|YP_005839865.1| - 0.0016 18.4 0.0 0.0038 17.1 0.0 1.7 1 0 0 1 1 1 1 Helicase C-terminal domain eIF3_N PF09440.5 gi|385803465|ref|YP_005839865.1| - 0.0056 16.8 1.7 0.28 11.3 0.0 2.8 1 1 2 3 3 3 1 eIF3 subunit 6 N terminal domain DUF853 PF05872.7 gi|385803465|ref|YP_005839865.1| - 0.026 12.8 0.0 0.063 11.6 0.1 1.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) AAA_22 PF13401.1 gi|385803465|ref|YP_005839865.1| - 0.064 13.3 0.2 1.7 8.7 0.0 2.7 2 1 0 2 2 2 0 AAA domain BRE1 PF08647.6 gi|385803465|ref|YP_005839865.1| - 0.14 12.1 4.6 0.35 10.8 3.2 1.7 1 0 0 1 1 1 0 BRE1 E3 ubiquitin ligase DUF499 PF04465.7 gi|385803466|ref|YP_005839866.1| - 5.1e-26 90.5 0.2 4.3e-24 84.2 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF499) zf-C2H2 PF00096.21 gi|385803466|ref|YP_005839866.1| - 1.8e-05 24.8 5.3 0.017 15.4 0.2 3.4 3 0 0 3 3 3 2 Zinc finger, C2H2 type zf-C2H2_6 PF13912.1 gi|385803466|ref|YP_005839866.1| - 8.6e-05 22.3 3.3 0.028 14.3 0.1 2.6 2 0 0 2 2 2 2 C2H2-type zinc finger zf-C2H2_4 PF13894.1 gi|385803466|ref|YP_005839866.1| - 0.0015 18.7 7.6 0.4 11.1 0.2 3.5 2 1 0 2 2 2 2 C2H2-type zinc finger zf-C2H2_jaz PF12171.3 gi|385803466|ref|YP_005839866.1| - 0.0049 16.9 2.4 0.19 11.9 0.2 2.5 2 0 0 2 2 2 1 Zinc-finger double-stranded RNA-binding AAA PF00004.24 gi|385803466|ref|YP_005839866.1| - 0.0065 16.6 0.3 0.057 13.6 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) zf-C2HC_2 PF13913.1 gi|385803466|ref|YP_005839866.1| - 0.026 14.2 0.6 0.052 13.2 0.4 1.5 1 0 0 1 1 1 0 zinc-finger of a C2HC-type U3snoRNP10 PF12397.3 gi|385803466|ref|YP_005839866.1| - 0.072 13.0 0.1 2 8.4 0.1 2.5 2 0 0 2 2 2 0 U3 small nucleolar RNA-associated protein 10 Methyltransf_26 PF13659.1 gi|385803468|ref|YP_005839868.1| - 2.9e-08 33.7 0.0 5.8e-07 29.5 0.0 2.5 1 1 0 1 1 1 1 Methyltransferase domain DUF1156 PF06634.7 gi|385803468|ref|YP_005839868.1| - 1.5e-05 24.6 0.0 3.5e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) UPF0020 PF01170.13 gi|385803468|ref|YP_005839868.1| - 0.074 12.6 0.0 15 5.1 0.0 2.5 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 SNF2_N PF00176.18 gi|385803469|ref|YP_005839869.1| - 1.8e-21 76.2 0.1 2.4e-20 72.5 0.0 2.4 3 0 0 3 3 3 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|385803469|ref|YP_005839869.1| - 1.2e-11 44.3 0.0 3.5e-11 42.8 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|385803469|ref|YP_005839869.1| - 0.0055 16.2 0.0 0.03 13.8 0.0 2.3 1 1 0 1 1 1 1 DEAD/DEAH box helicase Phage_connect_1 PF05135.8 gi|385803469|ref|YP_005839869.1| - 0.013 15.6 0.6 0.071 13.2 0.1 2.5 2 0 0 2 2 2 0 Phage gp6-like head-tail connector protein TF_Zn_Ribbon PF08271.7 gi|385803470|ref|YP_005839870.1| - 0.013 14.8 0.9 0.038 13.2 0.6 1.9 1 0 0 1 1 1 0 TFIIB zinc-binding DNA_ligase_ZBD PF03119.11 gi|385803470|ref|YP_005839870.1| - 0.033 13.9 0.1 0.11 12.2 0.1 1.8 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain RNR_N PF08343.5 gi|385803470|ref|YP_005839870.1| - 0.066 13.0 2.1 30 4.5 0.0 3.4 3 0 0 3 3 3 0 Ribonucleotide reductase N-terminal Helicase_C PF00271.26 gi|385803471|ref|YP_005839871.1| - 9.1e-06 25.4 0.0 2.1e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|385803471|ref|YP_005839871.1| - 0.0033 16.9 0.0 0.61 9.5 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase HTH_3 PF01381.17 gi|385803471|ref|YP_005839871.1| - 0.39 10.5 3.3 24 4.8 0.0 3.3 3 0 0 3 3 3 0 Helix-turn-helix Transpeptidase PF00905.17 gi|385803472|ref|YP_005839872.1| - 0.0097 14.9 0.0 0.021 13.8 0.0 1.5 1 0 0 1 1 1 1 Penicillin binding protein transpeptidase domain BpuSI_N PF15516.1 gi|385803473|ref|YP_005839873.1| - 0.082 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 BpuSI N-terminal domain RNA_pol_A_bac PF01000.21 gi|385803473|ref|YP_005839873.1| - 0.14 12.2 0.0 0.23 11.6 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase Rpb3/RpoA insert domain PIN_2 PF10130.4 gi|385803474|ref|YP_005839874.1| - 1.6e-31 109.0 0.4 1.7e-31 109.0 0.3 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|385803474|ref|YP_005839874.1| - 1.7e-08 35.1 1.1 2.3e-08 34.7 0.8 1.2 1 0 0 1 1 1 1 PIN domain PIN PF01850.16 gi|385803474|ref|YP_005839874.1| - 8.9e-05 22.8 3.7 0.00016 22.0 2.6 1.4 1 1 0 1 1 1 1 PIN domain UPF0547 PF10571.4 gi|385803476|ref|YP_005839876.1| - 0.0019 17.8 0.4 0.0094 15.6 0.3 1.8 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 Rubredoxin PF00301.15 gi|385803476|ref|YP_005839876.1| - 0.0064 16.3 0.4 3.3 7.6 0.0 2.2 2 0 0 2 2 2 2 Rubredoxin zf-TFIIB PF13453.1 gi|385803476|ref|YP_005839876.1| - 0.027 13.6 0.7 0.14 11.3 0.5 2.0 1 1 0 1 1 1 0 Transcription factor zinc-finger DZR PF12773.2 gi|385803476|ref|YP_005839876.1| - 0.037 13.8 0.2 0.11 12.3 0.1 1.7 1 1 0 1 1 1 0 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|385803476|ref|YP_005839876.1| - 0.04 13.3 0.8 3.5 7.2 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-IS66 PF13005.2 gi|385803476|ref|YP_005839876.1| - 0.049 13.6 1.0 3.4 7.7 0.1 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 TF_Zn_Ribbon PF08271.7 gi|385803476|ref|YP_005839876.1| - 0.068 12.5 0.8 3.4 7.0 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Methyltransf_13 PF08421.6 gi|385803476|ref|YP_005839876.1| - 0.073 12.5 0.5 0.18 11.3 0.0 1.8 2 0 0 2 2 2 0 Putative zinc binding domain zinc-ribbons_6 PF07191.7 gi|385803476|ref|YP_005839876.1| - 0.074 12.8 0.4 1 9.1 0.0 2.0 2 0 0 2 2 2 0 zinc-ribbons Zn_Tnp_IS1595 PF12760.2 gi|385803476|ref|YP_005839876.1| - 0.11 12.3 0.1 10 5.9 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|385803476|ref|YP_005839876.1| - 0.11 11.6 0.3 3.4 6.9 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|385803476|ref|YP_005839876.1| - 0.16 11.7 0.4 5.7 6.7 0.0 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C4_Topoisom PF01396.14 gi|385803476|ref|YP_005839876.1| - 0.16 11.4 1.0 6.4 6.3 0.0 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF1610 PF07754.6 gi|385803476|ref|YP_005839876.1| - 0.17 12.0 0.2 0.17 12.0 0.2 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) DUF2752 PF10825.3 gi|385803476|ref|YP_005839876.1| - 0.18 11.8 0.1 0.18 11.8 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) zf-RING_3 PF14369.1 gi|385803476|ref|YP_005839876.1| - 0.2 11.7 1.5 11 6.1 0.0 2.3 2 0 0 2 2 2 0 zinc-finger Zn-ribbon_8 PF09723.5 gi|385803476|ref|YP_005839876.1| - 0.21 11.5 1.0 17 5.4 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain Xan_ur_permease PF00860.15 gi|385803483|ref|YP_005839883.1| - 5.8e-93 311.4 45.1 7.8e-93 311.0 31.3 1.1 1 0 0 1 1 1 1 Permease family Abi PF02517.11 gi|385803484|ref|YP_005839884.1| - 9.6e-12 44.8 12.2 2.8e-11 43.3 8.5 2.1 1 1 0 1 1 1 1 CAAX protease self-immunity DUF433 PF04255.9 gi|385803486|ref|YP_005839886.1| - 2e-06 27.0 0.1 3.5e-06 26.3 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF433) DUF2964 PF11177.3 gi|385803491|ref|YP_005839891.1| - 5.7 6.9 9.7 3.1 7.7 0.3 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2964) RHH_1 PF01402.16 gi|385803492|ref|YP_005839892.1| - 0.0048 16.7 0.0 0.0076 16.0 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Arc PF03869.9 gi|385803492|ref|YP_005839892.1| - 0.044 13.4 0.0 0.076 12.6 0.0 1.5 1 0 0 1 1 1 0 Arc-like DNA binding domain SWIM PF04434.12 gi|385803494|ref|YP_005839894.1| - 0.044 13.2 0.2 0.099 12.1 0.1 1.6 1 1 0 1 1 1 0 SWIM zinc finger DUF1469 PF07332.6 gi|385803495|ref|YP_005839895.1| - 0.02 14.6 5.7 0.026 14.2 3.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF3397 PF11877.3 gi|385803496|ref|YP_005839896.1| - 0.14 12.1 1.0 0.17 11.9 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3397) SecE PF00584.15 gi|385803496|ref|YP_005839896.1| - 2.9 7.5 5.4 0.89 9.1 0.3 2.1 2 0 0 2 2 2 0 SecE/Sec61-gamma subunits of protein translocation complex Tom22 PF04281.8 gi|385803497|ref|YP_005839897.1| - 0.045 13.2 1.2 0.045 13.2 0.8 1.2 1 0 0 1 1 1 0 Mitochondrial import receptor subunit Tom22 Metallophos PF00149.23 gi|385803498|ref|YP_005839898.1| - 2.2e-10 40.2 3.1 3.4e-10 39.6 2.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|385803498|ref|YP_005839898.1| - 3.4e-10 39.9 6.6 8e-10 38.7 4.6 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain AAA_13 PF13166.1 gi|385803499|ref|YP_005839899.1| - 1.3e-18 66.8 89.0 7.5e-10 37.9 13.6 5.2 2 1 3 5 5 5 5 AAA domain AAA_23 PF13476.1 gi|385803499|ref|YP_005839899.1| - 1.8e-18 67.5 0.0 1.8e-18 67.5 0.0 7.4 1 1 3 4 4 2 1 AAA domain AAA_21 PF13304.1 gi|385803499|ref|YP_005839899.1| - 2.4e-10 40.8 24.6 7.6e-06 26.0 4.9 4.4 1 1 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|385803499|ref|YP_005839899.1| - 3.5e-09 36.4 0.0 1.4e-08 34.5 0.0 2.1 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_27 PF13514.1 gi|385803499|ref|YP_005839899.1| - 2.1e-08 32.3 106.2 0.0021 15.8 20.4 5.2 2 1 3 5 5 5 5 AAA domain IncA PF04156.9 gi|385803499|ref|YP_005839899.1| - 4.3e-06 26.4 135.2 0.018 14.6 10.8 6.7 1 1 5 6 6 6 4 IncA protein Reo_sigmaC PF04582.7 gi|385803499|ref|YP_005839899.1| - 4.5e-06 26.0 32.9 0.14 11.3 0.3 5.6 1 1 4 6 6 6 5 Reovirus sigma C capsid protein NPV_P10 PF05531.7 gi|385803499|ref|YP_005839899.1| - 1.4e-05 25.1 61.1 1.7 8.9 0.2 9.9 3 2 4 7 7 7 2 Nucleopolyhedrovirus P10 protein AAA_29 PF13555.1 gi|385803499|ref|YP_005839899.1| - 3.1e-05 23.3 0.0 6.1e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad50_zn_hook PF04423.9 gi|385803499|ref|YP_005839899.1| - 9.5e-05 21.7 1.6 9.5e-05 21.7 1.1 8.1 9 2 0 9 9 7 1 Rad50 zinc hook motif Laminin_I PF06008.9 gi|385803499|ref|YP_005839899.1| - 0.00026 20.4 6.9 0.00026 20.4 4.8 6.4 2 1 2 5 5 4 1 Laminin Domain I Baculo_PEP_C PF04513.7 gi|385803499|ref|YP_005839899.1| - 0.0011 18.7 43.6 0.6 9.9 3.0 7.3 2 2 3 6 6 6 4 Baculovirus polyhedron envelope protein, PEP, C terminus FliD_N PF02465.13 gi|385803499|ref|YP_005839899.1| - 0.0022 18.3 39.2 5.2 7.4 0.2 9.2 2 2 5 7 7 7 0 Flagellar hook-associated protein 2 N-terminus BLOC1_2 PF10046.4 gi|385803499|ref|YP_005839899.1| - 0.0023 18.0 86.8 0.11 12.6 1.4 10.8 3 3 7 11 11 11 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 LPP PF04728.8 gi|385803499|ref|YP_005839899.1| - 0.0027 17.4 31.9 0.73 9.6 0.8 8.2 8 2 0 8 8 7 2 Lipoprotein leucine-zipper Laminin_II PF06009.7 gi|385803499|ref|YP_005839899.1| - 0.0033 17.1 4.5 0.0033 17.1 3.1 7.2 2 1 4 7 7 7 1 Laminin Domain II Prefoldin_2 PF01920.15 gi|385803499|ref|YP_005839899.1| - 0.0067 16.1 17.6 0.0067 16.1 12.2 11.1 2 2 6 9 9 6 2 Prefoldin subunit DUF1664 PF07889.7 gi|385803499|ref|YP_005839899.1| - 0.018 14.8 72.4 0.14 11.9 0.4 8.7 3 3 7 10 10 10 0 Protein of unknown function (DUF1664) AAA_25 PF13481.1 gi|385803499|ref|YP_005839899.1| - 0.043 13.2 0.0 0.043 13.2 0.0 4.2 3 1 2 5 5 5 0 AAA domain Zn-ribbon_8 PF09723.5 gi|385803499|ref|YP_005839899.1| - 0.073 13.0 0.2 0.21 11.5 0.2 1.7 1 0 0 1 1 1 0 Zinc ribbon domain zf-TFIIB PF13453.1 gi|385803499|ref|YP_005839899.1| - 0.1 11.8 1.3 0.29 10.3 0.2 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger ABC_tran PF00005.22 gi|385803499|ref|YP_005839899.1| - 0.12 12.6 0.0 0.12 12.6 0.0 6.3 2 1 0 2 2 1 0 ABC transporter Occludin_ELL PF07303.8 gi|385803499|ref|YP_005839899.1| - 0.13 13.0 72.2 1.6 9.4 5.0 7.8 2 2 6 8 8 8 0 Occludin homology domain GAS PF13851.1 gi|385803499|ref|YP_005839899.1| - 0.42 9.7 107.4 1.7 7.8 9.2 6.6 1 1 4 6 6 5 0 Growth-arrest specific micro-tubule binding Seryl_tRNA_N PF02403.17 gi|385803499|ref|YP_005839899.1| - 0.49 10.4 108.5 0.19 11.7 4.3 9.4 2 2 6 8 8 7 0 Seryl-tRNA synthetase N-terminal domain Mnd1 PF03962.10 gi|385803499|ref|YP_005839899.1| - 0.77 9.3 103.6 0.21 11.2 6.8 7.7 1 1 6 7 7 7 0 Mnd1 family TPR_MLP1_2 PF07926.7 gi|385803499|ref|YP_005839899.1| - 0.97 9.1 115.1 0.021 14.5 9.4 6.7 4 2 2 6 6 5 0 TPR/MLP1/MLP2-like protein Spc7 PF08317.6 gi|385803499|ref|YP_005839899.1| - 1.1 7.8 106.1 0.22 10.1 9.4 5.6 1 1 4 5 5 5 0 Spc7 kinetochore protein Syntaxin-6_N PF09177.6 gi|385803499|ref|YP_005839899.1| - 2.1 8.8 93.3 4.1 7.8 3.9 10.1 1 1 10 11 11 11 0 Syntaxin 6, N-terminal TBPIP PF07106.8 gi|385803499|ref|YP_005839899.1| - 3.7 7.0 101.4 0.065 12.7 4.2 7.5 1 1 5 7 7 7 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF3584 PF12128.3 gi|385803499|ref|YP_005839899.1| - 6.6 3.9 113.7 1.2 6.3 13.7 4.6 2 1 0 3 3 3 0 Protein of unknown function (DUF3584) CENP-F_leu_zip PF10473.4 gi|385803499|ref|YP_005839899.1| - 6.8 6.5 132.0 0.051 13.4 12.9 7.2 1 1 4 6 6 6 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FliJ PF02050.11 gi|385803499|ref|YP_005839899.1| - 7.7 6.5 90.4 0.059 13.4 4.6 7.7 3 2 4 7 7 7 0 Flagellar FliJ protein NurA PF09376.5 gi|385803500|ref|YP_005839900.1| - 2.6e-18 66.4 0.0 4.3e-18 65.7 0.0 1.3 1 0 0 1 1 1 1 NurA domain Costars PF14705.1 gi|385803500|ref|YP_005839900.1| - 0.12 12.4 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 Costars Robl_LC7 PF03259.12 gi|385803500|ref|YP_005839900.1| - 0.13 11.7 0.0 0.3 10.6 0.0 1.5 1 0 0 1 1 1 0 Roadblock/LC7 domain DUF2963 PF11178.3 gi|385803500|ref|YP_005839900.1| - 0.15 11.5 0.0 17 4.9 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2963) DUF87 PF01935.12 gi|385803502|ref|YP_005839902.1| - 9.4e-30 104.1 0.0 1.8e-29 103.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|385803502|ref|YP_005839902.1| - 2e-17 63.6 0.0 6.5e-11 42.2 0.0 2.1 1 1 1 2 2 2 2 AAA-like domain DUF853 PF05872.7 gi|385803502|ref|YP_005839902.1| - 0.0002 19.8 0.0 0.0022 16.4 0.0 2.1 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.4 gi|385803502|ref|YP_005839902.1| - 0.00027 19.6 0.0 0.0021 16.7 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|385803502|ref|YP_005839902.1| - 0.00069 19.1 0.0 0.0048 16.3 0.0 2.0 2 0 0 2 2 2 1 FtsK/SpoIIIE family HAS-barrel PF09378.5 gi|385803502|ref|YP_005839902.1| - 0.016 15.0 0.6 0.033 14.0 0.4 1.6 1 0 0 1 1 1 0 HAS barrel domain Zot PF05707.7 gi|385803502|ref|YP_005839902.1| - 0.05 13.0 0.0 0.44 9.9 0.0 2.1 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) T4SS-DNA_transf PF02534.9 gi|385803502|ref|YP_005839902.1| - 0.06 11.9 0.0 0.15 10.6 0.0 1.5 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer ResIII PF04851.10 gi|385803502|ref|YP_005839902.1| - 0.098 12.4 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Tic20 PF09685.5 gi|385803503|ref|YP_005839903.1| - 2.7e-27 94.8 4.9 3.1e-27 94.7 3.4 1.0 1 0 0 1 1 1 1 Tic20-like protein DUF4153 PF13687.1 gi|385803503|ref|YP_005839903.1| - 0.005 16.3 4.1 0.0084 15.6 2.9 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4153) DUF1345 PF07077.6 gi|385803503|ref|YP_005839903.1| - 0.058 12.9 0.6 0.068 12.6 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1345) DUF3753 PF12575.3 gi|385803503|ref|YP_005839903.1| - 2.7 7.8 11.3 0.17 11.6 3.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3753) TMC PF07810.8 gi|385803503|ref|YP_005839903.1| - 8 6.9 6.4 26 5.2 4.4 1.7 1 1 0 1 1 1 0 TMC domain DUF4397 PF14344.1 gi|385803506|ref|YP_005839906.1| - 5.5e-97 320.5 26.2 7e-40 136.1 3.1 4.1 3 1 1 4 4 4 4 Domain of unknown function (DUF4397) AlgF PF11182.3 gi|385803506|ref|YP_005839906.1| - 1.5e-08 34.5 1.1 8.1e-05 22.3 0.1 2.9 2 1 0 2 2 2 2 Alginate O-acetyl transferase AlgF Sipho_tail PF05709.6 gi|385803506|ref|YP_005839906.1| - 2.3e-05 23.6 0.0 0.27 10.3 0.0 3.1 3 0 0 3 3 3 2 Phage tail protein Y_Y_Y PF07495.8 gi|385803506|ref|YP_005839906.1| - 0.0075 15.9 0.0 2.9 7.6 0.0 3.3 3 0 0 3 3 3 1 Y_Y_Y domain DUF2846 PF11008.3 gi|385803506|ref|YP_005839906.1| - 0.0088 15.8 0.0 36 4.2 0.0 4.1 3 2 0 4 4 4 0 Protein of unknown function (DUF2846) FlgD_ig PF13860.1 gi|385803506|ref|YP_005839906.1| - 0.036 13.7 6.4 11 5.8 0.0 4.9 4 1 0 4 4 4 0 FlgD Ig-like domain GDPD PF03009.12 gi|385803507|ref|YP_005839907.1| - 8.6e-23 81.1 0.3 1.1e-13 51.2 0.4 2.1 1 1 1 2 2 2 2 Glycerophosphoryl diester phosphodiesterase family MarR_2 PF12802.2 gi|385803508|ref|YP_005839908.1| - 2.5e-07 30.2 0.0 3.6e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|385803508|ref|YP_005839908.1| - 0.0001 22.0 0.0 0.00022 20.9 0.0 1.6 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|385803508|ref|YP_005839908.1| - 0.00016 21.7 0.0 0.00027 21.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator DUF2250 PF10007.4 gi|385803508|ref|YP_005839908.1| - 0.00017 21.4 0.0 0.00021 21.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.14 gi|385803508|ref|YP_005839908.1| - 0.00048 19.7 0.0 0.00081 19.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|385803508|ref|YP_005839908.1| - 0.00051 19.3 0.1 0.0011 18.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|385803508|ref|YP_005839908.1| - 0.00065 19.9 0.1 0.0011 19.2 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|385803508|ref|YP_005839908.1| - 0.0012 18.4 0.0 0.0018 17.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|385803508|ref|YP_005839908.1| - 0.0017 18.2 0.0 0.0035 17.2 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_45 PF14947.1 gi|385803508|ref|YP_005839908.1| - 0.0018 18.0 0.0 0.0024 17.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_36 PF13730.1 gi|385803508|ref|YP_005839908.1| - 0.0031 17.6 0.0 0.0045 17.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|385803508|ref|YP_005839908.1| - 0.0045 16.5 0.2 0.012 15.2 0.0 1.6 2 0 0 2 2 2 1 Homeodomain-like domain MarR PF01047.17 gi|385803508|ref|YP_005839908.1| - 0.0047 16.6 0.0 0.0078 15.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|385803508|ref|YP_005839908.1| - 0.011 15.3 0.1 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_20 PF12840.2 gi|385803508|ref|YP_005839908.1| - 0.017 14.9 0.0 0.026 14.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|385803508|ref|YP_005839908.1| - 0.026 14.0 0.1 0.05 13.1 0.1 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit PaaX PF07848.7 gi|385803508|ref|YP_005839908.1| - 0.052 13.5 0.2 0.13 12.3 0.2 1.6 1 1 0 1 1 1 0 PaaX-like protein HTH_29 PF13551.1 gi|385803508|ref|YP_005839908.1| - 0.054 13.6 0.2 0.065 13.3 0.1 1.2 1 0 0 1 1 1 0 Winged helix-turn helix FeoC PF09012.5 gi|385803508|ref|YP_005839908.1| - 0.085 12.5 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_Tnp_ISL3 PF13542.1 gi|385803508|ref|YP_005839908.1| - 0.12 11.5 0.0 0.2 10.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 z-alpha PF02295.12 gi|385803508|ref|YP_005839908.1| - 0.13 12.0 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain Glyco_tranf_2_4 PF13704.1 gi|385803508|ref|YP_005839908.1| - 0.67 10.2 7.9 0.53 10.6 1.2 3.0 1 1 1 2 2 2 0 Glycosyl transferase family 2 PemK PF02452.12 gi|385803509|ref|YP_005839909.1| - 2e-05 24.7 0.0 2.2e-05 24.6 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein DUF3368 PF11848.3 gi|385803511|ref|YP_005839911.1| - 3.8e-13 48.7 0.0 1.9e-12 46.5 0.0 2.1 3 0 0 3 3 3 1 Domain of unknown function (DUF3368) UPF0175 PF03683.8 gi|385803512|ref|YP_005839912.1| - 5.1e-16 57.9 0.6 5.1e-16 57.9 0.4 1.5 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.16 gi|385803512|ref|YP_005839912.1| - 0.00015 21.4 2.8 0.00038 20.2 0.7 2.5 3 1 1 4 4 4 1 Ribbon-helix-helix protein, copG family UPF0081 PF03652.10 gi|385803512|ref|YP_005839912.1| - 0.086 12.9 0.1 0.12 12.4 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0081) OrfB_Zn_ribbon PF07282.6 gi|385803514|ref|YP_005839914.1| - 0.67 9.6 2.7 0.26 10.9 0.2 1.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain TBPIP PF07106.8 gi|385803515|ref|YP_005839915.1| - 0.081 12.4 2.8 0.12 11.9 1.6 1.4 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) NYD-SP28 PF14772.1 gi|385803515|ref|YP_005839915.1| - 0.12 12.4 3.4 0.31 11.1 2.0 1.8 1 1 1 2 2 2 0 Sperm tail DUF1843 PF08898.5 gi|385803515|ref|YP_005839915.1| - 0.62 10.1 8.7 0.92 9.6 1.0 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF1843) zf-ribbon_3 PF13248.1 gi|385803517|ref|YP_005839917.1| - 0.022 13.9 1.1 0.68 9.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF2387 PF09526.5 gi|385803517|ref|YP_005839917.1| - 0.082 12.8 2.5 0.17 11.8 0.1 2.2 2 1 0 2 2 2 0 Probable metal-binding protein (DUF2387) Nudix_N_2 PF14803.1 gi|385803517|ref|YP_005839917.1| - 0.53 10.0 3.8 0.44 10.2 0.3 2.3 3 0 0 3 3 3 0 Nudix N-terminal Mso1_Sec1_bdg PF14475.1 gi|385803518|ref|YP_005839918.1| - 0.064 12.6 0.1 0.12 11.8 0.1 1.5 1 0 0 1 1 1 0 Sec1-binding region of Mso1 DrsE PF02635.10 gi|385803520|ref|YP_005839920.1| - 1.7e-06 28.0 0.0 2.2e-06 27.7 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family PAS_9 PF13426.1 gi|385803521|ref|YP_005839921.1| - 7.3e-27 93.7 10.4 1.2e-08 35.2 0.0 5.5 5 0 0 5 5 5 4 PAS domain PAS_4 PF08448.5 gi|385803521|ref|YP_005839921.1| - 8e-26 90.2 7.3 5.3e-12 45.7 0.1 4.7 4 0 0 4 4 4 3 PAS fold Response_reg PF00072.19 gi|385803521|ref|YP_005839921.1| - 3.4e-21 75.3 0.0 1.2e-20 73.6 0.0 2.0 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|385803521|ref|YP_005839921.1| - 3.8e-20 71.6 0.4 1.1e-19 70.1 0.3 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|385803521|ref|YP_005839921.1| - 1.5e-18 66.7 12.7 2.5e-11 43.5 0.1 5.1 6 0 0 6 6 6 3 PAS fold HisKA PF00512.20 gi|385803521|ref|YP_005839921.1| - 3.9e-17 62.0 0.8 3.9e-17 62.0 0.6 4.0 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|385803521|ref|YP_005839921.1| - 4e-11 42.7 12.3 6.4e-05 22.7 0.0 5.9 6 0 0 6 6 6 3 PAS fold PAS_8 PF13188.1 gi|385803521|ref|YP_005839921.1| - 2.5e-08 33.4 0.0 9.1e-05 22.1 0.0 3.5 3 0 0 3 3 3 2 PAS domain HATPase_c_5 PF14501.1 gi|385803521|ref|YP_005839921.1| - 2.2e-05 24.0 1.4 0.00017 21.2 0.0 2.9 3 0 0 3 3 3 1 GHKL domain HATPase_c_3 PF13589.1 gi|385803521|ref|YP_005839921.1| - 0.0029 17.2 4.2 0.01 15.4 2.9 2.0 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Zn-ribbon_8 PF09723.5 gi|385803522|ref|YP_005839922.1| - 0.00045 20.0 0.5 0.24 11.3 0.1 2.2 2 0 0 2 2 2 2 Zinc ribbon domain DNA_ligase_ZBD PF03119.11 gi|385803522|ref|YP_005839922.1| - 0.0017 17.9 1.3 0.23 11.1 0.0 2.2 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain zinc-ribbons_6 PF07191.7 gi|385803522|ref|YP_005839922.1| - 0.0025 17.5 0.7 0.29 10.9 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbons UPF0547 PF10571.4 gi|385803522|ref|YP_005839922.1| - 0.0027 17.3 1.1 0.66 9.7 0.1 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|385803522|ref|YP_005839922.1| - 0.0037 17.0 0.4 0.0062 16.3 0.3 1.4 1 1 0 1 1 1 1 Double zinc ribbon zf-IS66 PF13005.2 gi|385803522|ref|YP_005839922.1| - 0.0064 16.4 1.1 0.18 11.7 0.1 2.1 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 zf-C2H2 PF00096.21 gi|385803522|ref|YP_005839922.1| - 0.0077 16.5 1.7 0.53 10.7 0.0 2.2 2 0 0 2 2 2 1 Zinc finger, C2H2 type CpXC PF14353.1 gi|385803522|ref|YP_005839922.1| - 0.0083 16.0 0.5 0.02 14.8 0.4 1.6 1 1 0 1 1 1 1 CpXC protein zf-LITAF-like PF10601.4 gi|385803522|ref|YP_005839922.1| - 0.015 15.1 0.1 0.47 10.3 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zf-RING_3 PF14369.1 gi|385803522|ref|YP_005839922.1| - 0.017 15.1 1.5 8.8 6.4 0.1 2.9 3 0 0 3 3 3 0 zinc-finger zf-TFIIB PF13453.1 gi|385803522|ref|YP_005839922.1| - 0.02 14.0 1.1 1.1 8.4 0.1 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-RING_4 PF14570.1 gi|385803522|ref|YP_005839922.1| - 0.021 14.3 0.4 3.4 7.3 0.0 2.2 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain zf-C3HC4_3 PF13920.1 gi|385803522|ref|YP_005839922.1| - 0.033 13.8 0.6 3 7.5 0.1 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-ribbon_3 PF13248.1 gi|385803522|ref|YP_005839922.1| - 0.038 13.2 0.3 5.8 6.2 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF2256 PF10013.4 gi|385803522|ref|YP_005839922.1| - 0.041 13.6 0.5 3.7 7.3 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) TF_Zn_Ribbon PF08271.7 gi|385803522|ref|YP_005839922.1| - 0.075 12.3 1.4 2.2 7.6 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Auto_anti-p27 PF06677.7 gi|385803522|ref|YP_005839922.1| - 0.084 12.6 0.8 5.7 6.7 0.0 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF329 PF03884.9 gi|385803522|ref|YP_005839922.1| - 0.1 12.1 1.6 5.5 6.6 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF329) Sgf11 PF08209.6 gi|385803522|ref|YP_005839922.1| - 0.1 11.8 2.1 0.28 10.5 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Mut7-C PF01927.11 gi|385803522|ref|YP_005839922.1| - 0.14 12.1 0.0 0.17 11.8 0.0 1.1 1 0 0 1 1 1 0 Mut7-C RNAse domain DUF3039 PF11238.3 gi|385803522|ref|YP_005839922.1| - 0.18 11.2 1.2 3.5 7.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3039) zf-C4_Topoisom PF01396.14 gi|385803522|ref|YP_005839922.1| - 0.27 10.7 3.2 5.6 6.5 0.1 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-H2C2_2 PF13465.1 gi|385803522|ref|YP_005839922.1| - 0.62 10.4 2.7 11 6.5 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Opy2 PF09463.5 gi|385803522|ref|YP_005839922.1| - 2.3 8.3 5.8 17 5.6 0.9 2.2 2 0 0 2 2 2 0 Opy2 protein DUF217 PF02697.9 gi|385803524|ref|YP_005839924.1| - 4.9e-05 23.4 0.5 6.1e-05 23.1 0.4 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 RHH_1 PF01402.16 gi|385803524|ref|YP_005839924.1| - 0.0078 16.0 4.1 0.034 14.0 0.4 2.7 2 1 1 3 3 3 1 Ribbon-helix-helix protein, copG family PIN PF01850.16 gi|385803525|ref|YP_005839925.1| - 2.9e-12 46.9 0.1 3.5e-12 46.7 0.0 1.1 1 0 0 1 1 1 1 PIN domain PDDEXK_1 PF12705.2 gi|385803526|ref|YP_005839926.1| - 3.9e-16 59.1 0.1 3.9e-16 59.1 0.1 2.1 2 1 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Haemagg_act PF05860.8 gi|385803526|ref|YP_005839926.1| - 0.085 12.6 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 haemagglutination activity domain UvrD-helicase PF00580.16 gi|385803527|ref|YP_005839927.1| - 1.9e-50 171.9 0.0 5.3e-50 170.4 0.0 1.8 2 1 0 2 2 2 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|385803527|ref|YP_005839927.1| - 5.3e-33 114.9 0.0 7.4e-17 61.8 0.0 2.3 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|385803527|ref|YP_005839927.1| - 2e-13 49.8 0.0 1.2e-12 47.4 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain PDDEXK_1 PF12705.2 gi|385803527|ref|YP_005839927.1| - 1.7e-08 34.1 0.6 1.2e-07 31.3 0.1 2.4 2 1 0 2 2 2 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.1 gi|385803527|ref|YP_005839927.1| - 1.1e-07 31.9 0.4 0.011 15.8 0.1 3.2 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.1 gi|385803527|ref|YP_005839927.1| - 0.00021 20.9 0.0 0.00047 19.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_12 PF13087.1 gi|385803527|ref|YP_005839927.1| - 0.0012 18.2 0.2 0.033 13.5 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_11 PF13086.1 gi|385803527|ref|YP_005839927.1| - 0.012 15.2 1.1 1.4 8.4 0.0 2.5 3 0 0 3 3 3 0 AAA domain DUF2800 PF10926.3 gi|385803527|ref|YP_005839927.1| - 0.036 13.1 0.1 0.1 11.7 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2800) Viral_helicase1 PF01443.13 gi|385803527|ref|YP_005839927.1| - 0.042 13.3 1.8 22 4.4 0.1 3.7 4 0 0 4 4 4 0 Viral (Superfamily 1) RNA helicase Cas_Cas4 PF01930.12 gi|385803527|ref|YP_005839927.1| - 0.07 13.0 0.1 0.19 11.6 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function DUF83 Metallophos PF00149.23 gi|385803528|ref|YP_005839928.1| - 4.7e-09 35.9 0.1 8.4e-09 35.1 0.1 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|385803528|ref|YP_005839928.1| - 0.015 15.1 0.1 0.086 12.6 0.1 2.1 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain Cas_TM1802 PF09484.5 gi|385803530|ref|YP_005839930.1| - 1.3e-12 47.1 0.0 4.4e-12 45.3 0.0 1.7 1 1 0 1 1 1 1 CRISPR-associated protein TM1802 (cas_TM1802) DUF1679 PF07914.6 gi|385803530|ref|YP_005839930.1| - 0.0023 16.6 0.2 0.0039 15.8 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1679) DUF694 PF05107.7 gi|385803531|ref|YP_005839931.1| - 4.4e-58 196.6 0.0 5.1e-58 196.4 0.0 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF694) Cas_Cas5d PF09704.5 gi|385803532|ref|YP_005839932.1| - 1.8e-09 37.5 0.1 2.3e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) FAM91_N PF14647.1 gi|385803532|ref|YP_005839932.1| - 0.039 12.9 0.0 0.058 12.4 0.0 1.2 1 0 0 1 1 1 0 FAM91 N-terminus DEAD PF00270.24 gi|385803533|ref|YP_005839933.1| - 4.5e-08 32.7 0.1 9.8e-08 31.6 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase HD PF01966.17 gi|385803533|ref|YP_005839933.1| - 0.0041 17.1 0.0 0.013 15.5 0.0 1.9 1 0 0 1 1 1 1 HD domain ResIII PF04851.10 gi|385803533|ref|YP_005839933.1| - 0.074 12.8 0.0 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Cas_Cas4 PF01930.12 gi|385803534|ref|YP_005839934.1| - 1.4e-45 155.1 0.0 1.6e-45 154.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|385803534|ref|YP_005839934.1| - 2.5e-05 23.8 0.1 2.6e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas1 PF01867.11 gi|385803535|ref|YP_005839935.1| - 1.9e-80 269.9 0.0 2.3e-80 269.7 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 CRISPR_Cas2 PF09827.4 gi|385803536|ref|YP_005839936.1| - 2.8e-14 52.9 0.0 3.2e-14 52.8 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas2 RHH_1 PF01402.16 gi|385803537|ref|YP_005839937.1| - 0.0021 17.8 4.5 0.0036 17.1 0.8 2.5 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|385803537|ref|YP_005839937.1| - 0.0092 15.6 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix domain Antitoxin-MazE PF04014.13 gi|385803539|ref|YP_005839939.1| - 2.8e-10 39.6 0.2 3.5e-10 39.3 0.1 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF262 PF03235.9 gi|385803540|ref|YP_005839940.1| - 4.1e-29 102.1 1.1 4.1e-29 102.1 0.8 2.9 3 1 0 3 3 3 1 Protein of unknown function DUF262 DUF1524 PF07510.6 gi|385803540|ref|YP_005839940.1| - 1e-15 57.8 0.4 2.2e-15 56.7 0.3 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1524) RVT_3 PF13456.1 gi|385803541|ref|YP_005839941.1| - 0.13 12.0 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 Reverse transcriptase-like TrmB PF01978.14 gi|385803543|ref|YP_005839943.1| - 0.00056 19.5 0.0 0.0016 18.1 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FaeA PF04703.7 gi|385803543|ref|YP_005839943.1| - 0.038 14.1 0.0 0.066 13.3 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein Rrf2 PF02082.15 gi|385803543|ref|YP_005839943.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.1 gi|385803543|ref|YP_005839943.1| - 0.12 11.7 0.3 0.35 10.2 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|385803543|ref|YP_005839943.1| - 0.67 10.3 2.8 1 9.7 0.1 2.5 3 0 0 3 3 3 0 Winged helix DNA-binding domain TSC22 PF01166.13 gi|385803546|ref|YP_005839946.1| - 0.13 12.1 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 TSC-22/dip/bun family HTH_20 PF12840.2 gi|385803547|ref|YP_005839947.1| - 0.0053 16.5 0.1 0.0077 16.0 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2250 PF10007.4 gi|385803547|ref|YP_005839947.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF262 PF03235.9 gi|385803550|ref|YP_005839950.1| - 1.2e-37 129.9 3.5 1.2e-37 129.9 2.4 2.3 2 1 0 2 2 2 1 Protein of unknown function DUF262 DUF1524 PF07510.6 gi|385803550|ref|YP_005839950.1| - 7.9e-28 97.0 4.9 7.9e-28 97.0 3.4 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1524) DUF790 PF05626.6 gi|385803552|ref|YP_005839952.1| - 1.2e-135 451.9 0.0 1.3e-135 451.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) ResIII PF04851.10 gi|385803553|ref|YP_005839953.1| - 3.2e-24 85.7 0.0 1.7e-23 83.3 0.0 2.2 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|385803553|ref|YP_005839953.1| - 8.7e-20 70.3 0.1 1.9e-19 69.2 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|385803553|ref|YP_005839953.1| - 3.1e-12 46.3 0.0 8.1e-12 44.9 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|385803553|ref|YP_005839953.1| - 0.00019 21.5 0.0 0.00087 19.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|385803553|ref|YP_005839953.1| - 0.0026 17.2 0.1 0.059 12.7 0.0 2.7 3 0 0 3 3 3 1 IstB-like ATP binding protein PhoH PF02562.11 gi|385803553|ref|YP_005839953.1| - 0.012 14.8 0.0 0.022 14.0 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Zot PF05707.7 gi|385803553|ref|YP_005839953.1| - 0.012 15.0 0.0 0.025 14.0 0.0 1.6 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) Helicase_C_2 PF13307.1 gi|385803553|ref|YP_005839953.1| - 0.076 12.9 0.2 2 8.3 0.0 3.0 3 0 0 3 3 3 0 Helicase C-terminal domain DUF2800 PF10926.3 gi|385803555|ref|YP_005839955.1| - 0.00032 19.9 0.1 0.00063 18.9 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF2800) Med9 PF07544.8 gi|385803555|ref|YP_005839955.1| - 0.011 15.4 0.7 0.044 13.5 0.5 2.0 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 DivIC PF04977.10 gi|385803555|ref|YP_005839955.1| - 0.029 13.8 1.3 0.056 12.9 0.2 2.0 2 0 0 2 2 2 0 Septum formation initiator DUF972 PF06156.8 gi|385803555|ref|YP_005839955.1| - 0.16 12.3 0.5 0.44 10.9 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF972) DUF4140 PF13600.1 gi|385803555|ref|YP_005839955.1| - 1.3 9.5 6.1 0.72 10.3 2.3 2.0 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) IncA PF04156.9 gi|385803555|ref|YP_005839955.1| - 1.3 8.5 5.9 0.24 10.9 1.4 1.7 2 0 0 2 2 2 0 IncA protein ADIP PF11559.3 gi|385803555|ref|YP_005839955.1| - 2.8 7.8 6.0 0.47 10.3 0.9 2.0 2 1 0 2 2 2 0 Afadin- and alpha -actinin-Binding NikR_C PF08753.6 gi|385803556|ref|YP_005839956.1| - 5.1e-07 29.4 0.0 7.1e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain CbiM PF01891.11 gi|385803557|ref|YP_005839957.1| - 2.8e-31 108.7 24.6 3.2e-31 108.5 17.1 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF3816 PF12822.2 gi|385803557|ref|YP_005839957.1| - 0.048 13.5 28.2 0.023 14.6 15.3 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3816) DUF1370 PF07114.6 gi|385803557|ref|YP_005839957.1| - 3.3 6.9 6.7 1.8 7.7 0.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1370) CD20 PF04103.10 gi|385803557|ref|YP_005839957.1| - 6 6.7 19.0 1.2 9.0 4.8 2.4 1 1 1 2 2 2 0 CD20-like family CbiQ PF02361.11 gi|385803559|ref|YP_005839959.1| - 1.6e-25 89.9 3.8 2.1e-25 89.6 2.6 1.1 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|385803560|ref|YP_005839960.1| - 6.2e-28 97.8 0.0 8.6e-28 97.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385803560|ref|YP_005839960.1| - 4e-14 53.2 0.0 1.7e-09 38.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|385803560|ref|YP_005839960.1| - 2.1e-08 33.7 0.0 1.1e-07 31.2 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|385803560|ref|YP_005839960.1| - 4.9e-06 25.9 0.0 9.4e-06 25.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|385803560|ref|YP_005839960.1| - 1.6e-05 24.1 0.0 0.11 11.4 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_13 PF13166.1 gi|385803560|ref|YP_005839960.1| - 0.00033 19.2 0.0 0.017 13.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|385803560|ref|YP_005839960.1| - 0.0018 18.6 0.0 0.0025 18.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|385803560|ref|YP_005839960.1| - 0.002 18.1 0.1 0.0051 16.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.4 gi|385803560|ref|YP_005839960.1| - 0.0042 15.7 0.9 0.013 14.1 0.1 1.8 2 0 0 2 2 2 1 Predicted ATPase of the ABC class MukB PF04310.7 gi|385803560|ref|YP_005839960.1| - 0.0053 16.1 0.0 0.0084 15.4 0.0 1.3 1 0 0 1 1 1 1 MukB N-terminal DUF258 PF03193.11 gi|385803560|ref|YP_005839960.1| - 0.0064 15.6 0.0 0.01 15.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|385803560|ref|YP_005839960.1| - 0.0098 15.8 0.3 0.025 14.5 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|385803560|ref|YP_005839960.1| - 0.024 15.4 0.1 0.055 14.2 0.1 1.8 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|385803560|ref|YP_005839960.1| - 0.03 13.4 0.0 0.29 10.2 0.0 2.3 3 0 0 3 3 3 0 Zeta toxin AAA_19 PF13245.1 gi|385803560|ref|YP_005839960.1| - 0.046 13.4 1.1 1.1 9.0 0.0 2.8 4 0 0 4 4 2 0 Part of AAA domain AAA_30 PF13604.1 gi|385803560|ref|YP_005839960.1| - 0.046 13.2 0.0 0.088 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|385803560|ref|YP_005839960.1| - 0.052 13.4 0.0 0.093 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|385803560|ref|YP_005839960.1| - 0.064 12.9 0.0 0.2 11.3 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|385803560|ref|YP_005839960.1| - 0.072 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.1 gi|385803560|ref|YP_005839960.1| - 0.075 12.4 0.1 0.14 11.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain HAD PF12710.2 gi|385803560|ref|YP_005839960.1| - 0.087 12.9 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Miro PF08477.8 gi|385803560|ref|YP_005839960.1| - 0.14 12.7 0.0 0.26 11.8 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein SbcCD_C PF13558.1 gi|385803560|ref|YP_005839960.1| - 0.15 11.9 0.0 0.89 9.5 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NikR_C PF08753.6 gi|385803561|ref|YP_005839961.1| - 4.5e-11 42.4 0.1 8.2e-11 41.6 0.1 1.4 1 0 0 1 1 1 1 NikR C terminal nickel binding domain Kinesin-related PF06548.6 gi|385803561|ref|YP_005839961.1| - 0.03 12.8 0.1 0.034 12.7 0.1 1.1 1 0 0 1 1 1 0 Kinesin-related DUF3788 PF12663.2 gi|385803561|ref|YP_005839961.1| - 0.056 13.1 0.1 0.17 11.5 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3788) YojJ PF10372.4 gi|385803561|ref|YP_005839961.1| - 0.074 12.9 0.1 0.14 12.0 0.1 1.6 1 0 0 1 1 1 0 Bacterial membrane-spanning protein N-terminus UPF0061 PF02696.9 gi|385803562|ref|YP_005839962.1| - 9.8e-91 304.4 1.1 2.4e-88 296.5 0.8 2.0 1 1 0 1 1 1 1 Uncharacterized ACR, YdiU/UPF0061 family Phenyl_P_gamma PF09662.5 gi|385803562|ref|YP_005839962.1| - 0.11 12.2 0.0 0.38 10.4 0.0 2.0 2 0 0 2 2 2 0 Phenylphosphate carboxylase gamma subunit (Phenyl_P_gamma) PemK PF02452.12 gi|385803563|ref|YP_005839963.1| - 1e-22 80.4 0.1 1.1e-22 80.2 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein MarR_2 PF12802.2 gi|385803565|ref|YP_005839965.1| - 2e-05 24.1 0.0 3.2e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 MarR family HrcA_DNA-bdg PF03444.10 gi|385803565|ref|YP_005839965.1| - 0.00014 21.2 0.0 0.00022 20.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_Crp_2 PF13545.1 gi|385803565|ref|YP_005839965.1| - 0.00034 20.3 0.0 0.00054 19.6 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.1 gi|385803565|ref|YP_005839965.1| - 0.00048 19.4 0.0 0.00069 18.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|385803565|ref|YP_005839965.1| - 0.00059 19.9 0.0 0.00082 19.4 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator DUF4423 PF14394.1 gi|385803565|ref|YP_005839965.1| - 0.00083 18.9 0.1 0.0045 16.5 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) Sigma70_r4_2 PF08281.7 gi|385803565|ref|YP_005839965.1| - 0.0015 17.9 0.0 0.0026 17.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_27 PF13463.1 gi|385803565|ref|YP_005839965.1| - 0.0018 18.5 0.0 0.0037 17.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|385803565|ref|YP_005839965.1| - 0.0023 17.5 0.0 0.0038 16.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|385803565|ref|YP_005839965.1| - 0.0046 16.5 0.0 0.0091 15.5 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain PaaX PF07848.7 gi|385803565|ref|YP_005839965.1| - 0.0048 16.8 0.0 0.0083 16.1 0.0 1.4 1 0 0 1 1 1 1 PaaX-like protein GntR PF00392.16 gi|385803565|ref|YP_005839965.1| - 0.0063 15.9 0.0 0.012 15.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.14 gi|385803565|ref|YP_005839965.1| - 0.0065 16.3 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.15 gi|385803565|ref|YP_005839965.1| - 0.0067 16.0 0.0 0.0099 15.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|385803565|ref|YP_005839965.1| - 0.038 13.6 0.0 0.067 12.9 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_34 PF13601.1 gi|385803565|ref|YP_005839965.1| - 0.055 13.5 0.1 0.12 12.4 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|385803565|ref|YP_005839965.1| - 0.12 12.0 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain NikR_C PF08753.6 gi|385803567|ref|YP_005839967.1| - 1.4e-16 60.1 0.1 2e-16 59.6 0.0 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|385803567|ref|YP_005839967.1| - 8.9e-05 22.2 0.1 0.00014 21.5 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Arc PF03869.9 gi|385803567|ref|YP_005839967.1| - 0.044 13.4 0.1 0.07 12.7 0.0 1.3 1 0 0 1 1 1 0 Arc-like DNA binding domain cobW PF02492.14 gi|385803568|ref|YP_005839968.1| - 1.3e-48 164.7 0.0 1.7e-48 164.4 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.9 gi|385803568|ref|YP_005839968.1| - 2.1e-25 88.2 0.1 4.6e-25 87.1 0.1 1.6 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain GTP_EFTU PF00009.22 gi|385803568|ref|YP_005839968.1| - 3e-05 23.5 0.0 0.18 11.2 0.0 2.1 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_10 PF12846.2 gi|385803568|ref|YP_005839968.1| - 0.0085 15.5 0.1 0.048 13.1 0.1 2.0 1 1 1 2 2 2 1 AAA-like domain T2SE PF00437.15 gi|385803568|ref|YP_005839968.1| - 0.009 14.9 0.1 0.014 14.3 0.1 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein Zeta_toxin PF06414.7 gi|385803568|ref|YP_005839968.1| - 0.042 12.9 0.0 0.083 11.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin TrwB_AAD_bind PF10412.4 gi|385803568|ref|YP_005839968.1| - 0.069 11.7 0.0 0.12 10.9 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_19 PF13245.1 gi|385803568|ref|YP_005839968.1| - 0.075 12.7 0.1 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_14 PF13173.1 gi|385803568|ref|YP_005839968.1| - 0.077 12.8 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|385803568|ref|YP_005839968.1| - 0.082 13.2 0.0 0.16 12.2 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_22 PF13401.1 gi|385803568|ref|YP_005839968.1| - 0.087 12.9 0.0 0.35 11.0 0.0 2.0 3 0 0 3 3 2 0 AAA domain AAA_17 PF13207.1 gi|385803568|ref|YP_005839968.1| - 0.24 12.2 1.0 2.3 9.0 0.7 2.6 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|385803569|ref|YP_005839969.1| - 9.3e-47 158.7 0.1 1.2e-46 158.3 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.9 gi|385803569|ref|YP_005839969.1| - 2e-26 91.5 0.1 4.7e-26 90.3 0.1 1.7 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain GTP_EFTU PF00009.22 gi|385803569|ref|YP_005839969.1| - 0.00081 18.8 0.0 0.46 9.8 0.0 2.4 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain T2SE PF00437.15 gi|385803569|ref|YP_005839969.1| - 0.0063 15.4 0.1 0.011 14.6 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_19 PF13245.1 gi|385803569|ref|YP_005839969.1| - 0.0085 15.8 0.9 0.041 13.6 0.2 2.3 2 0 0 2 2 2 1 Part of AAA domain AAA_29 PF13555.1 gi|385803569|ref|YP_005839969.1| - 0.016 14.6 0.1 0.044 13.3 0.1 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zeta_toxin PF06414.7 gi|385803569|ref|YP_005839969.1| - 0.025 13.6 0.0 0.054 12.5 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin UPF0079 PF02367.12 gi|385803569|ref|YP_005839969.1| - 0.035 13.7 0.1 0.078 12.6 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_28 PF13521.1 gi|385803569|ref|YP_005839969.1| - 0.04 13.8 0.1 0.12 12.3 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|385803569|ref|YP_005839969.1| - 0.073 12.5 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_23 PF13476.1 gi|385803569|ref|YP_005839969.1| - 0.11 12.8 0.1 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain MoCF_biosynth PF00994.19 gi|385803570|ref|YP_005839970.1| - 2.3e-28 98.4 0.3 2.9e-28 98.0 0.2 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain NifU_N PF01592.11 gi|385803571|ref|YP_005839971.1| - 1.5e-26 92.8 0.0 1.8e-26 92.5 0.0 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain Mac PF12464.3 gi|385803573|ref|YP_005839973.1| - 0.049 13.6 0.2 0.081 12.9 0.0 1.4 2 0 0 2 2 2 0 Maltose acetyltransferase TroA PF01297.12 gi|385803574|ref|YP_005839974.1| - 1.3e-56 191.7 0.0 1.7e-56 191.3 0.0 1.1 1 0 0 1 1 1 1 Periplasmic solute binding protein family TAT_signal PF10518.4 gi|385803574|ref|YP_005839974.1| - 0.076 13.0 0.6 0.14 12.2 0.4 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|385803575|ref|YP_005839975.1| - 3.8e-31 108.1 0.0 5.1e-31 107.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385803575|ref|YP_005839975.1| - 8.2e-12 45.6 0.0 5.8e-06 26.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|385803575|ref|YP_005839975.1| - 8.4e-06 25.1 0.1 7.8e-05 21.9 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|385803575|ref|YP_005839975.1| - 4.4e-05 22.9 0.1 7.8e-05 22.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|385803575|ref|YP_005839975.1| - 0.00039 20.2 0.5 0.0079 16.0 0.3 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|385803575|ref|YP_005839975.1| - 0.00095 18.6 0.2 0.0087 15.4 0.1 2.2 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|385803575|ref|YP_005839975.1| - 0.0019 18.5 0.0 0.0034 17.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain YbjN PF10722.4 gi|385803575|ref|YP_005839975.1| - 0.0097 15.9 0.1 0.015 15.3 0.0 1.3 1 0 0 1 1 1 1 Putative bacterial sensory transduction regulator ArgK PF03308.11 gi|385803575|ref|YP_005839975.1| - 0.034 12.9 0.6 0.15 10.7 0.1 2.0 2 0 0 2 2 2 0 ArgK protein AAA_33 PF13671.1 gi|385803575|ref|YP_005839975.1| - 0.04 13.7 0.2 0.13 12.1 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|385803575|ref|YP_005839975.1| - 0.047 13.6 1.4 0.25 11.3 1.0 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|385803575|ref|YP_005839975.1| - 0.058 12.8 0.0 0.099 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain MobB PF03205.9 gi|385803575|ref|YP_005839975.1| - 0.069 12.8 0.0 0.53 9.9 0.0 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Peripla_BP_4 PF13407.1 gi|385803575|ref|YP_005839975.1| - 0.12 11.7 0.0 0.46 9.8 0.0 1.8 2 0 0 2 2 2 0 Periplasmic binding protein domain AAA_17 PF13207.1 gi|385803575|ref|YP_005839975.1| - 0.16 12.7 0.4 1.2 9.9 0.1 2.2 2 1 0 2 2 2 0 AAA domain ABC-3 PF00950.12 gi|385803576|ref|YP_005839976.1| - 4e-57 193.4 42.5 4.8e-57 193.1 29.5 1.1 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|385803576|ref|YP_005839976.1| - 7.1e-05 21.7 40.7 7.1e-05 21.7 28.2 2.0 1 1 1 2 2 2 2 FecCD transport family MarR_2 PF12802.2 gi|385803577|ref|YP_005839977.1| - 0.0012 18.4 0.1 0.0018 17.9 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_13 PF11972.3 gi|385803577|ref|YP_005839977.1| - 0.0014 18.3 0.0 0.0026 17.5 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain FaeA PF04703.7 gi|385803577|ref|YP_005839977.1| - 0.0069 16.5 0.0 0.0098 16.0 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein HTH_Crp_2 PF13545.1 gi|385803577|ref|YP_005839977.1| - 0.0076 16.0 0.0 0.0096 15.6 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.11 gi|385803577|ref|YP_005839977.1| - 0.095 12.0 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 TrmB PF01978.14 gi|385803577|ref|YP_005839977.1| - 0.1 12.2 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|385803577|ref|YP_005839977.1| - 0.13 12.2 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|385803577|ref|YP_005839977.1| - 0.14 11.8 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_DeoR PF08220.7 gi|385803577|ref|YP_005839977.1| - 0.16 11.5 0.2 0.3 10.6 0.0 1.5 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain PIN PF01850.16 gi|385803578|ref|YP_005839978.1| - 1.4e-06 28.6 0.2 1.7e-06 28.3 0.2 1.0 1 0 0 1 1 1 1 PIN domain zf-C2H2_6 PF13912.1 gi|385803579|ref|YP_005839979.1| - 1.9e-07 30.7 4.2 0.0021 17.9 0.2 2.2 2 0 0 2 2 2 2 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|385803579|ref|YP_005839979.1| - 1.3e-06 28.4 3.4 0.0088 16.3 0.3 2.1 2 0 0 2 2 2 2 Zinc finger, C2H2 type zf-C2H2_jaz PF12171.3 gi|385803579|ref|YP_005839979.1| - 5.9e-05 23.0 4.5 0.035 14.2 0.1 2.2 2 0 0 2 2 2 2 Zinc-finger double-stranded RNA-binding zf-C2H2_4 PF13894.1 gi|385803579|ref|YP_005839979.1| - 6.5e-05 22.9 5.0 0.011 15.9 0.3 2.1 2 0 0 2 2 2 2 C2H2-type zinc finger zf-C2H2_2 PF12756.2 gi|385803579|ref|YP_005839979.1| - 0.0011 19.0 4.3 0.16 12.0 0.6 2.0 1 1 1 2 2 2 2 C2H2 type zinc-finger (2 copies) zf-H2C2_5 PF13909.1 gi|385803579|ref|YP_005839979.1| - 0.0015 18.6 6.9 0.0046 17.1 0.4 2.4 2 1 0 2 2 2 1 C2H2-type zinc-finger domain zf-LYAR PF08790.6 gi|385803579|ref|YP_005839979.1| - 0.0085 15.7 4.4 0.89 9.3 0.1 2.2 2 0 0 2 2 2 2 LYAR-type C2HC zinc finger zinc_ribbon_4 PF13717.1 gi|385803579|ref|YP_005839979.1| - 0.029 14.0 1.3 0.55 9.9 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-DNL PF05180.7 gi|385803579|ref|YP_005839979.1| - 0.052 13.2 1.7 5.5 6.7 0.1 2.1 2 0 0 2 2 2 0 DNL zinc finger zf-ribbon_3 PF13248.1 gi|385803579|ref|YP_005839979.1| - 0.056 12.6 0.7 1.5 8.1 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|385803579|ref|YP_005839979.1| - 0.075 12.6 2.9 0.68 9.5 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|385803579|ref|YP_005839979.1| - 0.086 12.8 3.9 2.8 7.9 2.9 2.1 1 1 1 2 2 2 0 Zinc ribbon domain Prok-RING_1 PF14446.1 gi|385803579|ref|YP_005839979.1| - 0.097 12.4 4.1 0.93 9.2 0.7 2.1 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-HIT PF04438.11 gi|385803579|ref|YP_005839979.1| - 0.098 12.3 1.4 0.64 9.7 0.1 2.0 2 0 0 2 2 2 0 HIT zinc finger TFIIS_C PF01096.13 gi|385803579|ref|YP_005839979.1| - 0.099 12.2 2.9 1.8 8.2 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-Di19 PF05605.7 gi|385803579|ref|YP_005839979.1| - 0.12 12.5 7.5 4.1 7.6 0.7 2.1 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding RRN7 PF11781.3 gi|385803579|ref|YP_005839979.1| - 0.13 11.7 2.1 1.1 8.7 0.1 2.1 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-RING_3 PF14369.1 gi|385803579|ref|YP_005839979.1| - 0.15 12.1 1.3 7.2 6.7 0.0 2.2 2 0 0 2 2 2 0 zinc-finger DNA_RNApol_7kD PF03604.8 gi|385803579|ref|YP_005839979.1| - 0.15 11.5 1.9 5.9 6.4 0.1 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit LIM PF00412.17 gi|385803579|ref|YP_005839979.1| - 0.2 11.7 3.6 1.1 9.4 2.5 1.9 1 1 0 1 1 1 0 LIM domain DUF629 PF04780.7 gi|385803579|ref|YP_005839979.1| - 0.23 9.9 5.6 1.2 7.5 1.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF629) DZR PF12773.2 gi|385803579|ref|YP_005839979.1| - 0.27 11.0 3.1 0.6 9.9 2.2 1.6 1 1 0 1 1 1 0 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|385803579|ref|YP_005839979.1| - 0.28 11.0 4.3 10 6.0 3.0 2.0 1 1 0 1 1 1 0 zinc-ribbons zf-C3HC4_3 PF13920.1 gi|385803579|ref|YP_005839979.1| - 0.38 10.4 2.8 0.72 9.5 1.9 1.5 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) C1_4 PF07975.7 gi|385803579|ref|YP_005839979.1| - 0.69 9.9 5.0 1.3 9.1 3.4 1.6 1 1 0 1 1 1 0 TFIIH C1-like domain HNH PF01844.18 gi|385803579|ref|YP_005839979.1| - 0.75 9.7 6.3 1.7 8.5 1.0 2.1 2 0 0 2 2 2 0 HNH endonuclease zf-DBF PF07535.7 gi|385803579|ref|YP_005839979.1| - 1.2 8.8 6.5 1.4 8.6 3.9 1.6 1 1 0 1 1 1 0 DBF zinc finger FYVE PF01363.16 gi|385803579|ref|YP_005839979.1| - 1.3 8.9 4.7 11 6.0 0.4 2.0 1 1 1 2 2 2 0 FYVE zinc finger zf-H2C2_2 PF13465.1 gi|385803579|ref|YP_005839979.1| - 8.5 6.8 12.8 3.6 8.0 0.1 3.0 3 1 0 3 3 3 0 Zinc-finger double domain HTH_Crp_2 PF13545.1 gi|385803580|ref|YP_005839980.1| - 0.014 15.1 0.0 0.019 14.7 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Phage_CI_repr PF07022.8 gi|385803580|ref|YP_005839980.1| - 0.056 13.5 0.0 0.067 13.2 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_11 PF08279.7 gi|385803580|ref|YP_005839980.1| - 0.057 13.0 0.0 0.082 12.5 0.0 1.3 1 0 0 1 1 1 0 HTH domain TrmB PF01978.14 gi|385803580|ref|YP_005839980.1| - 0.082 12.6 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|385803580|ref|YP_005839980.1| - 0.12 12.0 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 MarR family LacI PF00356.16 gi|385803580|ref|YP_005839980.1| - 0.14 11.8 0.0 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family MarR PF01047.17 gi|385803580|ref|YP_005839980.1| - 0.14 11.8 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 MarR family FAD_binding_3 PF01494.14 gi|385803581|ref|YP_005839981.1| - 2.4e-09 36.7 0.6 3.6e-08 32.8 0.4 2.0 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|385803581|ref|YP_005839981.1| - 0.00034 19.8 3.3 0.0029 16.7 2.3 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|385803581|ref|YP_005839981.1| - 0.0062 15.2 0.0 0.6 8.6 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|385803581|ref|YP_005839981.1| - 0.012 15.5 0.0 0.17 11.7 0.0 2.5 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|385803581|ref|YP_005839981.1| - 0.049 12.5 0.2 0.096 11.5 0.1 1.5 2 0 0 2 2 2 0 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|385803581|ref|YP_005839981.1| - 0.15 12.4 0.5 1 9.8 0.3 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|385803581|ref|YP_005839981.1| - 0.17 10.6 2.3 4.7 5.9 1.0 2.3 1 1 1 2 2 2 0 FAD binding domain DUF4010 PF13194.1 gi|385803582|ref|YP_005839982.1| - 3.3e-65 219.3 20.2 3.3e-65 219.3 14.0 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF4010) CytB6-F_Fe-S PF08802.5 gi|385803583|ref|YP_005839983.1| - 0.52 10.3 2.1 1.3 9.0 0.1 2.3 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit MFS_1 PF07690.11 gi|385803584|ref|YP_005839984.1| - 9.7e-30 103.4 48.7 9.7e-30 103.4 33.8 1.5 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|385803584|ref|YP_005839984.1| - 2.8e-05 23.8 3.5 0.00038 20.2 0.5 2.8 2 0 0 2 2 2 1 MFS_1 like family ESSS PF10183.4 gi|385803584|ref|YP_005839984.1| - 4.9 7.5 6.2 0.67 10.3 0.7 2.4 2 1 0 2 2 2 0 ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) DUF4538 PF15061.1 gi|385803584|ref|YP_005839984.1| - 9.7 5.5 8.1 12 5.2 0.3 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4538) Molybdopterin PF00384.17 gi|385803585|ref|YP_005839985.1| - 4.4e-63 213.5 0.0 5.5e-63 213.2 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|385803585|ref|YP_005839985.1| - 5.4e-16 58.3 0.1 1.3e-15 57.1 0.0 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|385803585|ref|YP_005839985.1| - 2.3e-08 33.6 2.2 5.7e-08 32.4 1.5 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain NIR_SIR PF01077.17 gi|385803586|ref|YP_005839986.1| - 7.8e-45 152.0 0.1 1.3e-29 102.6 0.0 2.4 3 0 0 3 3 3 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|385803586|ref|YP_005839986.1| - 3.4e-32 109.8 0.1 4.2e-15 55.1 0.0 3.1 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain Molybdopterin PF00384.17 gi|385803587|ref|YP_005839987.1| - 1.4e-58 198.6 0.0 1.7e-58 198.4 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|385803587|ref|YP_005839987.1| - 2.1e-11 43.5 0.4 1.1e-10 41.2 0.2 2.2 1 1 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|385803587|ref|YP_005839987.1| - 1.2e-07 31.3 0.7 3.1e-07 30.0 0.5 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain DUF2993 PF11209.3 gi|385803588|ref|YP_005839988.1| - 0.06 13.2 0.8 0.076 12.9 0.5 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2993) Acetyltransf_10 PF13673.1 gi|385803590|ref|YP_005839990.1| - 0.00025 21.1 0.0 0.0005 20.1 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|385803590|ref|YP_005839990.1| - 0.0028 17.6 0.0 0.0069 16.3 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_6 PF13480.1 gi|385803590|ref|YP_005839990.1| - 0.0073 16.2 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Zip PF02535.17 gi|385803592|ref|YP_005839992.1| - 4.9e-06 25.7 18.8 4.9e-06 25.7 13.0 2.1 1 1 1 2 2 2 2 ZIP Zinc transporter DUF3488 PF11992.3 gi|385803592|ref|YP_005839992.1| - 0.93 8.0 8.3 0.96 8.0 3.3 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3488) SnoaL_4 PF13577.1 gi|385803593|ref|YP_005839993.1| - 0.00024 20.9 0.2 0.00037 20.4 0.1 1.5 1 1 0 1 1 1 1 SnoaL-like domain SnoaL_2 PF12680.2 gi|385803593|ref|YP_005839993.1| - 0.0043 17.4 0.1 0.0054 17.1 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain NTF2 PF02136.15 gi|385803593|ref|YP_005839993.1| - 0.039 14.3 0.0 0.057 13.7 0.0 1.5 1 1 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain NikR_C PF08753.6 gi|385803596|ref|YP_005839996.1| - 3.6e-19 68.4 1.8 5.2e-19 67.9 1.3 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|385803596|ref|YP_005839996.1| - 4.4e-06 26.3 0.0 7.6e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Arc PF03869.9 gi|385803596|ref|YP_005839996.1| - 0.13 11.9 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Arc-like DNA binding domain UPF0104 PF03706.8 gi|385803597|ref|YP_005839997.1| - 1.1e-30 106.9 41.9 1.5e-30 106.4 29.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) AIM24 PF01987.12 gi|385803598|ref|YP_005839998.1| - 9e-57 191.9 0.8 1e-56 191.8 0.6 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 HxlR PF01638.12 gi|385803600|ref|YP_005840000.1| - 3e-24 84.4 0.0 3.6e-24 84.1 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.17 gi|385803600|ref|YP_005840000.1| - 0.051 13.2 0.0 0.079 12.6 0.0 1.3 1 0 0 1 1 1 0 MarR family Isochorismatase PF00857.15 gi|385803601|ref|YP_005840001.1| - 4.7e-34 117.8 0.1 6e-34 117.4 0.1 1.1 1 0 0 1 1 1 1 Isochorismatase family Pentapeptide PF00805.17 gi|385803603|ref|YP_005840003.1| - 1.7e-51 170.7 44.8 6.4e-15 54.0 3.6 4.2 1 1 4 5 5 5 5 Pentapeptide repeats (8 copies) Pentapeptide_3 PF13576.1 gi|385803603|ref|YP_005840003.1| - 1e-19 70.1 0.0 3.5e-06 26.8 0.0 3.9 1 1 3 4 4 4 4 Pentapeptide repeats (9 copies) Pentapeptide_4 PF13599.1 gi|385803603|ref|YP_005840003.1| - 4.2e-18 64.9 0.0 2.3e-10 40.1 0.0 2.2 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) DUF4193 PF13834.1 gi|385803603|ref|YP_005840003.1| - 0.012 15.8 1.0 21 5.3 0.0 4.4 1 1 3 4 4 4 0 Domain of unknown function (DUF4193) Methyltransf_12 PF08242.7 gi|385803603|ref|YP_005840003.1| - 0.019 15.4 0.5 3.5 8.1 0.0 2.4 1 1 1 2 2 2 0 Methyltransferase domain SIC PF03482.8 gi|385803603|ref|YP_005840003.1| - 0.021 14.4 1.0 3.6 7.1 0.1 2.3 1 1 1 2 2 2 0 sic protein Ldl_recept_b PF00058.12 gi|385803603|ref|YP_005840003.1| - 0.34 11.2 2.7 8.2 6.8 0.1 3.3 2 1 2 4 4 4 0 Low-density lipoprotein receptor repeat class B DUF202 PF02656.10 gi|385803604|ref|YP_005840004.1| - 1.4 9.1 4.5 4.1 7.6 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF202) Multi_Drug_Res PF00893.14 gi|385803605|ref|YP_005840005.1| - 2.2e-26 92.1 5.6 2.8e-26 91.8 3.9 1.2 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.15 gi|385803605|ref|YP_005840005.1| - 0.72 9.9 8.6 1.1 9.3 5.9 1.5 1 1 0 1 1 1 0 EamA-like transporter family EmrE PF13536.1 gi|385803605|ref|YP_005840005.1| - 2.4 8.3 10.5 7.2 6.8 7.3 1.7 1 1 0 1 1 1 0 Multidrug resistance efflux transporter MFS_1 PF07690.11 gi|385803606|ref|YP_005840006.1| - 2.1e-25 89.2 63.4 1.4e-19 70.0 22.3 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Mrr_cat PF04471.7 gi|385803607|ref|YP_005840007.1| - 2.1e-27 95.2 0.0 4e-27 94.2 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease zf-ribbon_3 PF13248.1 gi|385803607|ref|YP_005840007.1| - 0.0018 17.4 2.2 0.0045 16.1 1.5 1.6 1 0 0 1 1 1 1 zinc-ribbon domain Siva PF05458.7 gi|385803607|ref|YP_005840007.1| - 0.086 12.4 1.2 0.13 11.8 0.8 1.3 1 0 0 1 1 1 0 Cd27 binding protein (Siva) Zn_Tnp_IS1595 PF12760.2 gi|385803607|ref|YP_005840007.1| - 0.17 11.6 0.2 0.17 11.6 0.2 3.1 1 1 2 3 3 3 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|385803607|ref|YP_005840007.1| - 0.25 10.9 2.7 0.66 9.5 1.9 1.7 1 0 0 1 1 1 0 zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|385803607|ref|YP_005840007.1| - 0.31 10.8 5.3 0.13 12.0 2.0 1.7 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DZR PF12773.2 gi|385803607|ref|YP_005840007.1| - 0.5 10.2 8.0 2.1 8.2 5.6 1.9 1 1 0 1 1 1 0 Double zinc ribbon zf-RING_5 PF14634.1 gi|385803607|ref|YP_005840007.1| - 7.9 6.3 10.7 12 5.6 5.5 2.3 2 0 0 2 2 2 0 zinc-RING finger domain AA_permease_2 PF13520.1 gi|385803608|ref|YP_005840008.1| - 3.3e-47 160.9 44.6 4e-47 160.7 30.9 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|385803608|ref|YP_005840008.1| - 2.5e-40 138.2 44.1 3.1e-40 137.9 30.6 1.0 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.8 gi|385803608|ref|YP_005840008.1| - 7.8e-08 31.3 13.6 7.8e-08 31.3 9.4 3.2 3 1 0 3 3 3 2 Spore germination protein AA_permease_C PF13906.1 gi|385803608|ref|YP_005840008.1| - 0.02 14.7 1.5 0.02 14.7 1.0 2.9 2 0 0 2 2 2 0 C-terminus of AA_permease Usp PF00582.21 gi|385803609|ref|YP_005840009.1| - 0.00041 20.5 0.5 1.6 8.9 0.0 2.8 2 1 0 2 2 2 2 Universal stress protein family PIG-L PF02585.12 gi|385803609|ref|YP_005840009.1| - 0.11 12.9 0.0 0.18 12.3 0.0 1.4 1 0 0 1 1 1 0 GlcNAc-PI de-N-acetylase Usp PF00582.21 gi|385803610|ref|YP_005840010.1| - 8.4e-13 48.7 3.7 3.9e-11 43.2 0.4 2.3 2 1 0 2 2 2 2 Universal stress protein family Acetyltransf_10 PF13673.1 gi|385803610|ref|YP_005840010.1| - 0.023 14.8 0.0 0.049 13.7 0.0 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Meth_synt_2 PF01717.13 gi|385803611|ref|YP_005840011.1| - 3.5e-153 509.2 0.0 2.4e-141 470.4 0.0 2.2 2 0 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|385803611|ref|YP_005840011.1| - 7.8e-137 455.6 0.0 3e-121 404.4 0.0 3.1 3 0 0 3 3 3 3 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|385803611|ref|YP_005840011.1| - 0.0031 16.4 0.3 0.57 9.0 0.0 2.6 3 0 0 3 3 3 2 Uroporphyrinogen decarboxylase (URO-D) OCD_Mu_crystall PF02423.10 gi|385803612|ref|YP_005840012.1| - 2.5e-56 190.7 6.6 2.8e-56 190.5 4.6 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|385803612|ref|YP_005840012.1| - 0.0025 17.9 0.0 0.012 15.6 0.0 2.1 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Zip PF02535.17 gi|385803613|ref|YP_005840013.1| - 4.9e-20 71.7 7.7 4.9e-20 71.7 5.3 2.5 2 1 0 2 2 2 2 ZIP Zinc transporter Hydantoinase_B PF02538.9 gi|385803615|ref|YP_005840015.1| - 2.6e-164 547.3 0.0 3e-164 547.1 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.13 gi|385803616|ref|YP_005840016.1| - 1.1e-97 326.6 7.9 1.3e-95 319.8 1.2 2.3 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|385803616|ref|YP_005840016.1| - 5.6e-54 182.3 5.3 1.1e-53 181.3 0.8 2.5 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.15 gi|385803616|ref|YP_005840016.1| - 0.017 14.4 0.3 0.63 9.2 0.1 2.2 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family MutL PF13941.1 gi|385803616|ref|YP_005840016.1| - 0.16 10.2 9.7 0.05 11.9 0.4 2.7 3 0 0 3 3 3 0 MutL protein FtsA PF14450.1 gi|385803616|ref|YP_005840016.1| - 0.4 10.5 7.8 2.2 8.1 0.4 2.9 3 0 0 3 3 3 0 Cell division protein FtsA HNH PF01844.18 gi|385803617|ref|YP_005840017.1| - 0.0085 15.9 1.1 0.026 14.3 0.7 1.8 1 1 0 1 1 1 1 HNH endonuclease DUF3505 PF12013.3 gi|385803617|ref|YP_005840017.1| - 0.14 12.4 1.6 0.14 12.4 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3505) zf-dskA_traR PF01258.12 gi|385803617|ref|YP_005840017.1| - 0.25 11.1 1.7 5.4 6.8 0.1 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger ABC_tran PF00005.22 gi|385803618|ref|YP_005840018.1| - 6.3e-35 120.4 0.0 9.3e-35 119.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|385803618|ref|YP_005840018.1| - 1.4e-10 41.0 1.1 6.5e-10 38.8 0.1 2.4 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|385803618|ref|YP_005840018.1| - 7.7e-07 29.3 0.0 0.0016 18.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain TOBE PF03459.12 gi|385803618|ref|YP_005840018.1| - 0.0069 16.4 0.0 0.044 13.8 0.0 2.3 2 0 0 2 2 2 1 TOBE domain AAA PF00004.24 gi|385803618|ref|YP_005840018.1| - 0.0087 16.2 1.2 0.044 13.9 0.8 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|385803618|ref|YP_005840018.1| - 0.014 15.5 1.7 0.097 12.8 1.2 2.1 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|385803618|ref|YP_005840018.1| - 0.015 13.9 0.1 0.03 12.9 0.0 1.3 1 1 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_16 PF13191.1 gi|385803618|ref|YP_005840018.1| - 0.024 14.6 0.6 0.044 13.7 0.3 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.1 gi|385803618|ref|YP_005840018.1| - 0.026 13.9 0.0 0.13 11.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|385803618|ref|YP_005840018.1| - 0.051 13.5 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|385803618|ref|YP_005840018.1| - 0.062 12.4 0.0 0.095 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|385803618|ref|YP_005840018.1| - 0.066 14.0 0.2 0.14 12.9 0.1 1.6 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|385803618|ref|YP_005840018.1| - 0.071 12.3 0.1 2.3 7.3 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain PRK PF00485.13 gi|385803618|ref|YP_005840018.1| - 0.1 12.1 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.1 gi|385803618|ref|YP_005840018.1| - 0.14 11.9 0.4 0.27 11.1 0.3 1.7 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|385803619|ref|YP_005840019.1| - 4e-09 36.2 13.9 4e-09 36.2 9.6 2.6 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|385803620|ref|YP_005840020.1| - 7.1e-13 48.4 19.9 7.1e-13 48.4 13.8 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_6 PF13343.1 gi|385803621|ref|YP_005840021.1| - 2.5e-19 69.5 0.1 4.2e-19 68.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|385803621|ref|YP_005840021.1| - 8.7e-18 65.0 1.7 1.1e-17 64.6 1.0 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|385803621|ref|YP_005840021.1| - 1.8e-10 41.0 4.5 2.6e-10 40.5 2.7 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|385803621|ref|YP_005840021.1| - 7.3e-08 32.3 0.1 1.3e-07 31.4 0.1 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Como_LCP PF02247.11 gi|385803621|ref|YP_005840021.1| - 0.089 11.1 0.0 0.14 10.4 0.0 1.2 1 0 0 1 1 1 0 Large coat protein MOSC PF03473.12 gi|385803622|ref|YP_005840022.1| - 4.2e-15 55.3 0.0 7.5e-15 54.5 0.0 1.4 1 0 0 1 1 1 1 MOSC domain MOSC_N PF03476.11 gi|385803622|ref|YP_005840022.1| - 2.5e-12 46.5 0.0 6.1e-12 45.3 0.0 1.7 1 1 0 1 1 1 1 MOSC N-terminal beta barrel domain Spore_YtfJ PF09579.5 gi|385803624|ref|YP_005840024.1| - 0.095 12.5 2.8 0.13 12.0 1.9 1.2 1 0 0 1 1 1 0 Sporulation protein YtfJ (Spore_YtfJ) E1-E2_ATPase PF00122.15 gi|385803625|ref|YP_005840025.1| - 7.9e-58 195.2 0.9 1.8e-57 194.0 0.6 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|385803625|ref|YP_005840025.1| - 1e-44 153.5 3.0 1.7e-44 152.7 2.1 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|385803625|ref|YP_005840025.1| - 6.9e-23 80.5 3.3 1.6e-10 40.9 0.0 3.9 5 1 0 5 5 5 2 Heavy-metal-associated domain HAD PF12710.2 gi|385803625|ref|YP_005840025.1| - 6.1e-18 65.6 0.0 1.4e-17 64.4 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|385803625|ref|YP_005840025.1| - 0.0083 15.7 2.0 0.12 11.9 0.3 2.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HipA_N PF07805.7 gi|385803625|ref|YP_005840025.1| - 0.047 13.9 0.0 0.12 12.6 0.0 1.6 1 0 0 1 1 1 0 HipA-like N-terminal domain Pox_A14 PF05767.7 gi|385803625|ref|YP_005840025.1| - 0.084 12.8 0.3 0.28 11.1 0.2 1.9 1 0 0 1 1 1 0 Poxvirus virion envelope protein A14 zf-LITAF-like PF10601.4 gi|385803625|ref|YP_005840025.1| - 1.8 8.4 6.9 0.83 9.5 0.0 3.0 3 0 0 3 3 3 0 LITAF-like zinc ribbon domain DUF4385 PF14328.1 gi|385803627|ref|YP_005840027.1| - 2.4e-57 192.9 4.7 2.9e-57 192.6 3.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4385) Transglut_core PF01841.14 gi|385803628|ref|YP_005840028.1| - 9.7e-28 96.6 0.3 3.6e-27 94.8 0.0 2.2 3 0 0 3 3 3 1 Transglutaminase-like superfamily DUF4129 PF13559.1 gi|385803628|ref|YP_005840028.1| - 9.1e-08 31.9 0.3 2.6e-07 30.5 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) DUF3488 PF11992.3 gi|385803628|ref|YP_005840028.1| - 3.9e-06 25.7 3.0 6.4e-06 25.0 2.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3488) DUF4480 PF13715.1 gi|385803628|ref|YP_005840028.1| - 0.00068 19.6 9.5 0.95 9.5 0.4 3.8 3 0 0 3 3 3 3 Domain of unknown function (DUF4480) Transglut_core3 PF13471.1 gi|385803628|ref|YP_005840028.1| - 0.0029 17.4 0.0 0.0079 15.9 0.0 1.7 1 0 0 1 1 1 1 Transglutaminase-like superfamily X PF00739.14 gi|385803628|ref|YP_005840028.1| - 0.46 10.3 2.5 25 4.7 1.5 2.6 2 0 0 2 2 2 0 Trans-activation protein X DUF58 PF01882.13 gi|385803630|ref|YP_005840030.1| - 8e-16 57.9 0.0 1.9e-15 56.7 0.0 1.8 1 1 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|385803630|ref|YP_005840030.1| - 1.3e-05 25.1 1.0 1.3e-05 25.1 0.7 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|385803630|ref|YP_005840030.1| - 0.00022 20.4 0.0 0.00035 19.7 0.0 1.3 1 0 0 1 1 1 1 Translocon-associated protein beta (TRAPB) NPCBM_assoc PF10633.4 gi|385803630|ref|YP_005840030.1| - 0.00083 19.3 0.2 0.004 17.1 0.1 2.2 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|385803630|ref|YP_005840030.1| - 0.0064 16.5 0.1 0.05 13.6 0.0 2.4 1 1 2 3 3 3 1 CARDB LPAM_2 PF13627.1 gi|385803630|ref|YP_005840030.1| - 0.85 9.4 3.8 2.2 8.0 2.7 1.8 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site AAA_3 PF07726.6 gi|385803632|ref|YP_005840032.1| - 1.9e-65 218.4 0.1 3e-65 217.7 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|385803632|ref|YP_005840032.1| - 3.9e-14 52.5 0.0 9.7e-14 51.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|385803632|ref|YP_005840032.1| - 5.1e-07 28.7 0.0 0.00012 20.9 0.0 2.2 2 0 0 2 2 2 2 MCM2/3/5 family Sigma54_activat PF00158.21 gi|385803632|ref|YP_005840032.1| - 2.8e-05 23.6 0.0 0.0001 21.8 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.24 gi|385803632|ref|YP_005840032.1| - 4.5e-05 23.6 0.0 0.00018 21.7 0.0 2.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|385803632|ref|YP_005840032.1| - 0.022 13.7 0.1 0.28 10.1 0.0 2.5 1 1 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|385803632|ref|YP_005840032.1| - 0.067 12.9 0.1 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain ODV-E18 PF10717.4 gi|385803633|ref|YP_005840033.1| - 0.29 10.5 1.2 0.48 9.8 0.2 1.8 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 DUF3225 PF11533.3 gi|385803634|ref|YP_005840034.1| - 0.0024 17.5 0.0 0.0029 17.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3225) SnoaL_3 PF13474.1 gi|385803634|ref|YP_005840034.1| - 0.0025 17.8 0.4 0.0031 17.5 0.3 1.1 1 0 0 1 1 1 1 SnoaL-like domain NTF2 PF02136.15 gi|385803634|ref|YP_005840034.1| - 0.046 14.0 0.0 0.065 13.6 0.0 1.2 1 0 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain Coat_X PF07552.6 gi|385803634|ref|YP_005840034.1| - 0.27 11.0 1.4 0.58 9.9 0.1 2.0 1 1 1 2 2 2 0 Spore Coat Protein X and V domain bPH_2 PF03703.9 gi|385803635|ref|YP_005840035.1| - 2e-13 50.1 0.3 2e-13 50.1 0.2 1.8 3 0 0 3 3 3 1 Bacterial PH domain bPH_2 PF03703.9 gi|385803636|ref|YP_005840036.1| - 2.3e-17 62.7 0.0 3.9e-17 62.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial PH domain HTH_45 PF14947.1 gi|385803637|ref|YP_005840037.1| - 9.5e-06 25.3 0.0 2e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|385803637|ref|YP_005840037.1| - 0.00061 20.0 0.1 0.0046 17.2 0.0 2.3 2 1 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|385803637|ref|YP_005840037.1| - 0.013 15.1 0.0 0.024 14.3 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Mrr_N PF14338.1 gi|385803637|ref|YP_005840037.1| - 0.1 12.6 0.0 0.43 10.7 0.0 2.2 2 1 0 2 2 2 0 Mrr N-terminal domain Pyridox_oxidase PF01243.15 gi|385803638|ref|YP_005840038.1| - 2.9e-13 49.6 0.1 4.4e-13 49.0 0.1 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_oxidase_2 PF13883.1 gi|385803638|ref|YP_005840038.1| - 0.033 13.9 0.1 0.042 13.6 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase DUF2255 PF10012.4 gi|385803638|ref|YP_005840038.1| - 0.13 12.2 0.2 0.2 11.6 0.1 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2255) Acetyltransf_1 PF00583.19 gi|385803639|ref|YP_005840039.1| - 1.3e-06 28.3 0.0 1.9e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|385803639|ref|YP_005840039.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF21 PF01595.15 gi|385803640|ref|YP_005840040.1| - 1.2e-26 93.1 0.5 1.7e-26 92.6 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF21 CBS PF00571.23 gi|385803640|ref|YP_005840040.1| - 1.9e-10 40.3 0.0 5.7e-07 29.2 0.1 2.4 2 0 0 2 2 2 2 CBS domain Sigma70_r3 PF04539.11 gi|385803640|ref|YP_005840040.1| - 0.048 13.5 1.1 0.087 12.7 0.1 1.9 2 0 0 2 2 2 0 Sigma-70 region 3 Hydrolase_6 PF13344.1 gi|385803641|ref|YP_005840041.1| - 2.4e-26 91.5 0.0 5.6e-26 90.3 0.0 1.6 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|385803641|ref|YP_005840041.1| - 3.5e-20 71.5 0.0 9.4e-20 70.1 0.0 1.8 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|385803641|ref|YP_005840041.1| - 5.1e-08 33.5 0.2 1.1e-06 29.2 0.1 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|385803641|ref|YP_005840041.1| - 2.2e-07 31.2 0.0 8.9e-05 22.7 0.0 2.3 1 1 0 2 2 2 2 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|385803641|ref|YP_005840041.1| - 0.097 12.8 0.0 0.29 11.2 0.0 1.8 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Peptidase_S9 PF00326.16 gi|385803642|ref|YP_005840042.1| - 1.7e-43 148.3 0.1 2.6e-43 147.7 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|385803642|ref|YP_005840042.1| - 2.2e-11 43.6 0.0 9e-11 41.7 0.0 1.9 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|385803642|ref|YP_005840042.1| - 1.3e-06 28.5 0.0 1e-05 25.5 0.0 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9_N PF02897.10 gi|385803642|ref|YP_005840042.1| - 1.8e-06 26.8 0.6 2.3e-06 26.4 0.0 1.4 2 0 0 2 2 2 1 Prolyl oligopeptidase, N-terminal beta-propeller domain PD40 PF07676.7 gi|385803642|ref|YP_005840042.1| - 1.1e-05 24.9 1.7 0.45 10.2 0.0 5.3 5 0 0 5 5 5 1 WD40-like Beta Propeller Repeat Peptidase_S15 PF02129.13 gi|385803642|ref|YP_005840042.1| - 1.4e-05 24.6 0.1 0.14 11.5 0.0 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Pectate_lyase22 PF14583.1 gi|385803642|ref|YP_005840042.1| - 7.1e-05 21.4 0.1 0.008 14.6 0.0 2.4 2 0 0 2 2 2 1 Oligogalacturonate lyase Peptidase_S28 PF05577.7 gi|385803642|ref|YP_005840042.1| - 0.00027 19.6 0.0 0.00049 18.7 0.0 1.3 1 0 0 1 1 1 1 Serine carboxypeptidase S28 DPPIV_N PF00930.16 gi|385803642|ref|YP_005840042.1| - 0.0005 18.7 0.1 0.71 8.3 0.0 3.1 1 1 1 3 3 3 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_1 PF00561.15 gi|385803642|ref|YP_005840042.1| - 0.00082 18.9 0.2 0.88 9.0 0.0 2.3 1 1 1 2 2 2 2 alpha/beta hydrolase fold eIF2A PF08662.6 gi|385803642|ref|YP_005840042.1| - 0.013 15.1 0.0 3.8 7.1 0.0 2.3 1 1 1 2 2 2 0 Eukaryotic translation initiation factor eIF2A Esterase PF00756.15 gi|385803642|ref|YP_005840042.1| - 0.021 14.2 0.0 0.076 12.4 0.0 2.1 2 0 0 2 2 2 0 Putative esterase Abhydrolase_2 PF02230.11 gi|385803642|ref|YP_005840042.1| - 0.038 13.4 0.0 0.25 10.7 0.0 2.0 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase YqcI_YcgG PF08892.6 gi|385803644|ref|YP_005840044.1| - 4.3e-77 258.5 0.0 5e-77 258.3 0.0 1.0 1 0 0 1 1 1 1 YqcI/YcgG family Isochorismatase PF00857.15 gi|385803645|ref|YP_005840045.1| - 4.9e-33 114.4 0.0 5.8e-33 114.2 0.0 1.1 1 0 0 1 1 1 1 Isochorismatase family AIM24 PF01987.12 gi|385803646|ref|YP_005840046.1| - 1.3e-39 135.8 0.1 1.5e-39 135.6 0.1 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Ribosomal_S8 PF00410.14 gi|385803647|ref|YP_005840047.1| - 0.2 11.5 0.1 0.41 10.4 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S8 DDE_Tnp_IS66 PF03050.9 gi|385803648|ref|YP_005840048.1| - 1.6e-53 181.6 1.7 3.2e-53 180.6 0.0 1.9 2 0 0 2 2 2 1 Transposase IS66 family DUF904 PF06005.7 gi|385803648|ref|YP_005840048.1| - 4.8e-10 39.5 5.2 1.5e-09 37.9 3.6 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF904) bZIP_1 PF00170.16 gi|385803648|ref|YP_005840048.1| - 0.00025 20.9 7.9 0.00051 19.9 5.5 1.5 1 0 0 1 1 1 1 bZIP transcription factor CASP_C PF08172.7 gi|385803648|ref|YP_005840048.1| - 0.00026 20.0 1.7 0.00054 19.0 1.2 1.4 1 0 0 1 1 1 1 CASP C terminal DUF972 PF06156.8 gi|385803648|ref|YP_005840048.1| - 0.0004 20.6 4.5 0.00075 19.8 2.7 1.7 2 0 0 2 2 1 1 Protein of unknown function (DUF972) zf-IS66 PF13005.2 gi|385803648|ref|YP_005840048.1| - 0.0031 17.4 8.9 0.01 15.8 6.2 2.0 1 1 0 1 1 1 1 zinc-finger binding domain of transposase IS66 Striatin PF08232.7 gi|385803648|ref|YP_005840048.1| - 0.0036 17.5 2.8 0.0077 16.5 1.9 1.5 1 0 0 1 1 1 1 Striatin family IncA PF04156.9 gi|385803648|ref|YP_005840048.1| - 0.01 15.4 6.0 0.021 14.4 4.2 1.4 1 0 0 1 1 1 0 IncA protein DivIC PF04977.10 gi|385803648|ref|YP_005840048.1| - 0.014 14.8 4.3 0.014 14.8 3.0 2.1 2 0 0 2 2 1 0 Septum formation initiator GAS PF13851.1 gi|385803648|ref|YP_005840048.1| - 0.021 14.0 5.7 0.039 13.1 3.9 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF4201 PF13870.1 gi|385803648|ref|YP_005840048.1| - 0.024 14.0 5.1 0.042 13.2 3.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) CENP-H PF05837.7 gi|385803648|ref|YP_005840048.1| - 0.026 14.6 2.8 0.057 13.5 1.9 1.5 1 0 0 1 1 1 0 Centromere protein H (CENP-H) Transposase_mut PF00872.13 gi|385803648|ref|YP_005840048.1| - 0.036 12.6 0.0 0.07 11.6 0.0 1.4 1 0 0 1 1 1 0 Transposase, Mutator family Atg14 PF10186.4 gi|385803648|ref|YP_005840048.1| - 0.038 12.9 3.8 0.076 11.9 2.6 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 eIF-3c_N PF05470.7 gi|385803648|ref|YP_005840048.1| - 0.039 12.0 0.1 0.04 12.0 0.1 1.1 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit 8 N-terminus TMF_DNA_bd PF12329.3 gi|385803648|ref|YP_005840048.1| - 0.05 13.4 9.4 0.12 12.2 6.5 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding ADIP PF11559.3 gi|385803648|ref|YP_005840048.1| - 0.053 13.4 6.8 0.099 12.5 4.7 1.4 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DDE_Tnp_IS240 PF13610.1 gi|385803648|ref|YP_005840048.1| - 0.089 12.7 2.0 0.2 11.6 0.0 2.2 2 1 0 2 2 2 0 DDE domain DUF1875 PF08961.5 gi|385803648|ref|YP_005840048.1| - 0.089 12.0 3.6 0.18 11.0 2.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1875) Synaptobrevin PF00957.16 gi|385803648|ref|YP_005840048.1| - 0.11 12.1 2.5 0.2 11.2 1.7 1.3 1 0 0 1 1 1 0 Synaptobrevin Fmp27_WPPW PF10359.4 gi|385803648|ref|YP_005840048.1| - 0.14 10.5 2.7 0.19 10.0 1.9 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain V_ATPase_I PF01496.14 gi|385803648|ref|YP_005840048.1| - 0.15 9.8 1.5 0.2 9.4 1.1 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Sipho_Gp157 PF05565.6 gi|385803648|ref|YP_005840048.1| - 0.15 11.6 3.9 0.25 10.9 2.7 1.3 1 0 0 1 1 1 0 Siphovirus Gp157 TSC22 PF01166.13 gi|385803648|ref|YP_005840048.1| - 0.2 11.6 13.9 0.087 12.7 3.7 3.2 2 1 1 3 3 3 0 TSC-22/dip/bun family Herpes_BLRF2 PF05812.7 gi|385803648|ref|YP_005840048.1| - 0.21 11.4 6.5 3.1 7.6 0.1 2.6 1 1 1 2 2 2 0 Herpesvirus BLRF2 protein bZIP_2 PF07716.10 gi|385803648|ref|YP_005840048.1| - 0.25 11.1 12.5 0.25 11.1 6.0 2.4 1 1 1 2 2 2 0 Basic region leucine zipper Spc24 PF08286.6 gi|385803648|ref|YP_005840048.1| - 0.53 9.9 4.4 1 9.1 3.0 1.5 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 NYD-SP28_assoc PF14775.1 gi|385803648|ref|YP_005840048.1| - 0.55 9.9 11.2 3 7.6 2.5 2.7 1 1 1 2 2 2 0 Sperm tail C-terminal domain APG6 PF04111.7 gi|385803648|ref|YP_005840048.1| - 0.6 9.1 4.1 1 8.3 2.8 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 EMP24_GP25L PF01105.19 gi|385803648|ref|YP_005840048.1| - 2 8.0 4.3 3.8 7.2 3.0 1.4 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD HALZ PF02183.13 gi|385803648|ref|YP_005840048.1| - 3.6 7.3 10.9 0.79 9.4 4.6 2.1 2 0 0 2 2 2 0 Homeobox associated leucine zipper SlyX PF04102.7 gi|385803648|ref|YP_005840048.1| - 3.8 7.9 7.4 12 6.3 5.1 1.9 1 1 0 1 1 1 0 SlyX KfrA_N PF11740.3 gi|385803648|ref|YP_005840048.1| - 8.5 6.8 10.7 9.5 6.6 2.2 2.9 2 1 0 2 2 2 0 Plasmid replication region DNA-binding N-term TauE PF01925.14 gi|385803649|ref|YP_005840049.1| - 1.5e-22 80.2 36.6 1.7e-22 80.0 25.4 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF2919 PF11143.3 gi|385803649|ref|YP_005840049.1| - 0.42 10.4 5.8 1.8 8.3 0.1 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF2919) MFS_1 PF07690.11 gi|385803651|ref|YP_005840051.1| - 2.1e-16 59.5 55.7 6.5e-11 41.5 21.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1424 PF07232.6 gi|385803651|ref|YP_005840051.1| - 0.091 11.5 0.0 0.14 10.9 0.0 1.1 1 0 0 1 1 1 0 Putative rep protein (DUF1424) RHH_1 PF01402.16 gi|385803652|ref|YP_005840052.1| - 0.001 18.8 0.1 0.0019 18.0 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RepB-RCR_reg PF10723.4 gi|385803652|ref|YP_005840052.1| - 0.027 14.2 0.8 0.045 13.4 0.6 1.4 1 0 0 1 1 1 0 Replication regulatory protein RepB Rubrerythrin PF02915.12 gi|385803653|ref|YP_005840053.1| - 0.026 14.8 0.5 0.097 12.9 0.1 1.9 2 0 0 2 2 2 0 Rubrerythrin Amidohydro_2 PF04909.9 gi|385803653|ref|YP_005840053.1| - 0.037 13.5 0.1 0.044 13.3 0.1 1.3 1 0 0 1 1 1 0 Amidohydrolase DUF892 PF05974.7 gi|385803653|ref|YP_005840053.1| - 0.08 12.7 0.8 3 7.6 0.1 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF892) Lactamase_B PF00753.22 gi|385803654|ref|YP_005840054.1| - 3.1e-19 69.4 5.0 4.6e-19 68.8 3.5 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|385803654|ref|YP_005840054.1| - 1.3e-08 35.1 0.0 2.7e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.2 gi|385803654|ref|YP_005840054.1| - 0.0021 17.6 0.1 0.023 14.2 0.0 2.2 2 1 0 2 2 2 1 Beta-lactamase superfamily domain DUF1289 PF06945.8 gi|385803655|ref|YP_005840055.1| - 3.6e-17 61.5 1.2 4.8e-17 61.1 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1289) DUF2848 PF11010.3 gi|385803655|ref|YP_005840055.1| - 0.027 13.9 0.1 0.072 12.5 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2848) Rad50_zn_hook PF04423.9 gi|385803655|ref|YP_005840055.1| - 0.12 11.8 2.6 1.9 8.0 0.0 2.2 2 0 0 2 2 2 0 Rad50 zinc hook motif MFS_1 PF07690.11 gi|385803656|ref|YP_005840056.1| - 3.1e-32 111.6 54.3 7.5e-18 64.3 18.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|385803656|ref|YP_005840056.1| - 2.6e-07 29.4 23.9 1.9e-05 23.2 12.5 3.4 1 1 0 2 2 2 2 MFS/sugar transport protein Cupin_2 PF07883.6 gi|385803658|ref|YP_005840058.1| - 2.1e-12 46.3 0.9 2.4e-12 46.1 0.6 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|385803658|ref|YP_005840058.1| - 7.2e-05 22.4 0.1 9.7e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Auxin_BP PF02041.11 gi|385803658|ref|YP_005840058.1| - 0.015 14.7 0.0 0.018 14.5 0.0 1.2 1 0 0 1 1 1 0 Auxin binding protein Ectoine_synth PF06339.7 gi|385803658|ref|YP_005840058.1| - 0.037 13.9 0.0 0.042 13.7 0.0 1.2 1 0 0 1 1 1 0 Ectoine synthase Cupin_3 PF05899.7 gi|385803658|ref|YP_005840058.1| - 0.078 12.3 0.0 0.12 11.8 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF861) ARD PF03079.9 gi|385803658|ref|YP_005840058.1| - 0.19 11.7 0.5 0.33 10.9 0.4 1.6 1 1 0 1 1 1 0 ARD/ARD' family VWA_2 PF13519.1 gi|385803659|ref|YP_005840059.1| - 1.4e-18 67.5 2.3 3.7e-18 66.2 1.6 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain Mg_chelatase PF01078.16 gi|385803659|ref|YP_005840059.1| - 2e-12 46.6 0.0 3.7e-08 32.7 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|385803659|ref|YP_005840059.1| - 3.4e-09 36.5 0.0 0.0002 21.1 0.0 3.2 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|385803659|ref|YP_005840059.1| - 5.3e-06 25.4 0.1 4.3e-05 22.4 0.0 2.2 2 0 0 2 2 2 1 MCM2/3/5 family AAA_16 PF13191.1 gi|385803659|ref|YP_005840059.1| - 0.00077 19.4 0.1 0.0085 16.0 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.21 gi|385803659|ref|YP_005840059.1| - 0.0015 18.0 0.0 0.2 11.1 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain VWA_3 PF13768.1 gi|385803659|ref|YP_005840059.1| - 0.0018 17.9 0.3 0.0043 16.7 0.2 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_29 PF13555.1 gi|385803659|ref|YP_005840059.1| - 0.1 12.1 0.0 0.32 10.5 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain CobN-Mg_chel PF02514.11 gi|385803660|ref|YP_005840060.1| - 0 1195.8 0.0 0 1195.6 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.11 gi|385803660|ref|YP_005840060.1| - 0.2 11.2 0.0 0.51 9.9 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain CbiC PF02570.10 gi|385803661|ref|YP_005840061.1| - 1.4e-51 174.7 1.5 1.7e-51 174.4 1.0 1.1 1 0 0 1 1 1 1 Precorrin-8X methylmutase LKAAEAR PF15478.1 gi|385803661|ref|YP_005840061.1| - 0.028 14.6 0.0 0.06 13.6 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function with LKAAEAR motif TP_methylase PF00590.15 gi|385803662|ref|YP_005840062.1| - 7.8e-27 94.3 0.1 9.1e-27 94.1 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF3252 PF11623.3 gi|385803662|ref|YP_005840062.1| - 0.025 13.9 0.1 0.049 13.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3252) Cob_adeno_trans PF01923.13 gi|385803663|ref|YP_005840063.1| - 3.1e-58 196.1 0.0 3.5e-58 195.9 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase Tropomyosin_1 PF12718.2 gi|385803663|ref|YP_005840063.1| - 0.042 13.7 0.0 0.058 13.2 0.0 1.2 1 0 0 1 1 1 0 Tropomyosin like Osmo_CC PF08946.5 gi|385803663|ref|YP_005840063.1| - 0.3 11.1 2.9 18 5.4 0.0 2.6 2 0 0 2 2 2 0 Osmosensory transporter coiled coil ArgK PF03308.11 gi|385803664|ref|YP_005840064.1| - 1e-89 299.8 12.8 9.6e-89 296.6 8.9 1.9 1 1 0 1 1 1 1 ArgK protein cobW PF02492.14 gi|385803664|ref|YP_005840064.1| - 8.4e-09 35.1 1.4 8.2e-08 31.8 1.0 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|385803664|ref|YP_005840064.1| - 5.6e-06 27.1 0.2 1.5e-05 25.8 0.0 1.9 2 1 0 2 2 1 1 AAA domain AAA_19 PF13245.1 gi|385803664|ref|YP_005840064.1| - 9.7e-06 25.2 0.8 0.00017 21.2 0.1 2.7 2 0 0 2 2 2 1 Part of AAA domain SRP54 PF00448.17 gi|385803664|ref|YP_005840064.1| - 3.5e-05 23.3 0.5 0.00012 21.5 0.3 1.9 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|385803664|ref|YP_005840064.1| - 3.8e-05 23.7 0.1 0.00024 21.1 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|385803664|ref|YP_005840064.1| - 0.00011 21.7 1.1 0.00025 20.5 0.8 1.7 1 1 0 1 1 1 1 AAA-like domain AAA_30 PF13604.1 gi|385803664|ref|YP_005840064.1| - 0.0002 21.0 0.1 0.0005 19.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|385803664|ref|YP_005840064.1| - 0.00033 20.4 0.1 0.00094 18.9 0.0 1.8 2 0 0 2 2 1 1 NTPase ATP_bind_1 PF03029.12 gi|385803664|ref|YP_005840064.1| - 0.00033 20.2 0.0 0.0011 18.6 0.0 1.8 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein ABC_tran PF00005.22 gi|385803664|ref|YP_005840064.1| - 0.00037 20.7 0.5 0.0012 19.1 0.0 2.0 2 0 0 2 2 2 1 ABC transporter AAA_18 PF13238.1 gi|385803664|ref|YP_005840064.1| - 0.00076 19.7 0.1 0.0022 18.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|385803664|ref|YP_005840064.1| - 0.00077 19.4 0.5 0.022 14.7 0.4 2.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|385803664|ref|YP_005840064.1| - 0.00078 18.9 0.1 0.97 8.8 0.0 2.4 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain DUF258 PF03193.11 gi|385803664|ref|YP_005840064.1| - 0.0013 17.9 0.5 0.0091 15.1 0.4 2.2 1 1 0 1 1 1 1 Protein of unknown function, DUF258 KAP_NTPase PF07693.9 gi|385803664|ref|YP_005840064.1| - 0.0026 16.7 0.0 0.0054 15.7 0.0 1.5 1 0 0 1 1 1 1 KAP family P-loop domain AAA_22 PF13401.1 gi|385803664|ref|YP_005840064.1| - 0.0032 17.6 0.0 0.011 15.9 0.0 1.9 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|385803664|ref|YP_005840064.1| - 0.0034 16.8 0.6 0.0068 15.8 0.4 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_29 PF13555.1 gi|385803664|ref|YP_005840064.1| - 0.0036 16.7 0.1 0.0094 15.4 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.7 gi|385803664|ref|YP_005840064.1| - 0.0038 16.3 0.3 0.012 14.7 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin AAA_28 PF13521.1 gi|385803664|ref|YP_005840064.1| - 0.004 17.1 0.5 0.011 15.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain TrwB_AAD_bind PF10412.4 gi|385803664|ref|YP_005840064.1| - 0.0088 14.7 0.1 0.022 13.4 0.0 1.6 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain NB-ARC PF00931.17 gi|385803664|ref|YP_005840064.1| - 0.0094 14.8 0.0 0.017 14.0 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain KTI12 PF08433.5 gi|385803664|ref|YP_005840064.1| - 0.01 15.0 0.1 0.06 12.5 0.0 2.0 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_33 PF13671.1 gi|385803664|ref|YP_005840064.1| - 0.016 15.1 0.1 0.11 12.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain PRK PF00485.13 gi|385803664|ref|YP_005840064.1| - 0.025 14.1 0.0 0.079 12.5 0.0 1.9 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family MobB PF03205.9 gi|385803664|ref|YP_005840064.1| - 0.026 14.2 0.2 0.15 11.7 0.0 2.5 3 1 0 3 3 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|385803664|ref|YP_005840064.1| - 0.036 13.7 0.0 0.13 11.9 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_25 PF13481.1 gi|385803664|ref|YP_005840064.1| - 0.053 12.9 0.3 0.22 10.9 0.2 2.0 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|385803664|ref|YP_005840064.1| - 0.059 13.1 0.4 0.35 10.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function DUF87 AAA_5 PF07728.9 gi|385803664|ref|YP_005840064.1| - 0.069 12.8 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Miro PF08477.8 gi|385803664|ref|YP_005840064.1| - 0.072 13.5 0.0 0.23 11.9 0.0 1.9 1 0 0 1 1 1 0 Miro-like protein AAA_14 PF13173.1 gi|385803664|ref|YP_005840064.1| - 0.11 12.4 0.0 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain B12-binding PF02310.14 gi|385803665|ref|YP_005840065.1| - 2.2e-19 69.4 0.8 2.6e-19 69.2 0.6 1.1 1 0 0 1 1 1 1 B12 binding domain Staph_haemo PF05480.6 gi|385803665|ref|YP_005840065.1| - 0.056 13.1 0.0 0.14 11.8 0.0 1.7 1 0 0 1 1 1 0 Staphylococcus haemolytic protein Amidohydro_4 PF13147.1 gi|385803665|ref|YP_005840065.1| - 0.063 13.2 0.4 0.07 13.1 0.3 1.1 1 0 0 1 1 1 0 Amidohydrolase BcrAD_BadFG PF01869.15 gi|385803665|ref|YP_005840065.1| - 0.096 11.9 0.0 0.22 10.7 0.0 1.5 1 1 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family Peripla_BP_6 PF13458.1 gi|385803665|ref|YP_005840065.1| - 0.1 11.9 0.0 0.18 11.1 0.0 1.4 1 1 0 1 1 1 0 Periplasmic binding protein 3HCDH_N PF02737.13 gi|385803666|ref|YP_005840066.1| - 8.2e-58 195.0 0.2 1e-57 194.7 0.2 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|385803666|ref|YP_005840066.1| - 1.6e-32 111.7 0.1 5.9e-32 109.9 0.0 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|385803666|ref|YP_005840066.1| - 0.0003 20.6 1.8 0.00074 19.3 1.3 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|385803666|ref|YP_005840066.1| - 0.0027 18.0 0.7 0.0073 16.7 0.5 1.8 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|385803666|ref|YP_005840066.1| - 0.0087 15.8 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|385803666|ref|YP_005840066.1| - 0.022 13.9 0.1 0.044 12.9 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|385803666|ref|YP_005840066.1| - 0.034 13.5 0.8 0.051 12.9 0.6 1.4 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain adh_short_C2 PF13561.1 gi|385803666|ref|YP_005840066.1| - 0.076 12.7 0.2 0.12 12.1 0.1 1.2 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase ApbA PF02558.11 gi|385803666|ref|YP_005840066.1| - 0.098 12.0 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DAO PF01266.19 gi|385803666|ref|YP_005840066.1| - 0.25 10.1 1.8 0.41 9.5 1.2 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase ABC_tran PF00005.22 gi|385803667|ref|YP_005840067.1| - 6.2e-30 104.2 0.0 9e-30 103.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385803667|ref|YP_005840067.1| - 3.5e-15 56.7 0.0 1.4e-10 41.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|385803667|ref|YP_005840067.1| - 3.9e-08 32.8 0.0 1.8e-07 30.6 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|385803667|ref|YP_005840067.1| - 4.8e-06 25.9 0.0 9.4e-06 25.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|385803667|ref|YP_005840067.1| - 3.8e-05 22.9 0.0 0.12 11.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|385803667|ref|YP_005840067.1| - 0.00013 22.3 0.0 0.00017 22.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|385803667|ref|YP_005840067.1| - 0.00027 19.5 0.0 0.017 13.6 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|385803667|ref|YP_005840067.1| - 0.0016 18.4 0.1 0.0038 17.1 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|385803667|ref|YP_005840067.1| - 0.0022 17.6 0.1 0.34 10.6 0.0 2.7 2 0 0 2 2 2 1 Part of AAA domain MukB PF04310.7 gi|385803667|ref|YP_005840067.1| - 0.0029 16.9 0.0 0.0042 16.4 0.0 1.2 1 0 0 1 1 1 1 MukB N-terminal DUF258 PF03193.11 gi|385803667|ref|YP_005840067.1| - 0.0034 16.6 0.0 0.0053 15.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|385803667|ref|YP_005840067.1| - 0.0043 17.0 0.7 0.016 15.1 0.5 1.8 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.4 gi|385803667|ref|YP_005840067.1| - 0.011 14.2 0.1 0.23 9.9 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_17 PF13207.1 gi|385803667|ref|YP_005840067.1| - 0.012 16.4 0.2 0.031 15.0 0.1 1.9 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|385803667|ref|YP_005840067.1| - 0.017 14.2 0.1 0.16 11.0 0.0 2.3 3 0 0 3 3 3 0 Zeta toxin AAA_30 PF13604.1 gi|385803667|ref|YP_005840067.1| - 0.019 14.5 0.0 0.03 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|385803667|ref|YP_005840067.1| - 0.03 13.7 0.4 0.084 12.2 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|385803667|ref|YP_005840067.1| - 0.059 13.2 0.2 0.17 11.7 0.1 1.7 2 1 0 2 2 1 0 AAA domain NACHT PF05729.7 gi|385803667|ref|YP_005840067.1| - 0.06 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain MobB PF03205.9 gi|385803667|ref|YP_005840067.1| - 0.069 12.8 0.1 0.2 11.3 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.1 gi|385803667|ref|YP_005840067.1| - 0.1 12.5 0.0 0.59 10.0 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Miro PF08477.8 gi|385803667|ref|YP_005840067.1| - 0.11 13.0 0.0 0.18 12.3 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein AAA_5 PF07728.9 gi|385803667|ref|YP_005840067.1| - 0.11 12.1 0.0 0.61 9.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NTPase_1 PF03266.10 gi|385803667|ref|YP_005840067.1| - 0.11 12.1 0.0 0.43 10.2 0.0 1.8 2 0 0 2 2 2 0 NTPase cobW PF02492.14 gi|385803667|ref|YP_005840067.1| - 0.12 11.8 0.1 0.24 10.8 0.1 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain HAD PF12710.2 gi|385803667|ref|YP_005840067.1| - 0.14 12.3 0.0 0.19 11.8 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase CbiQ PF02361.11 gi|385803668|ref|YP_005840068.1| - 1.9e-25 89.7 4.5 2.7e-25 89.2 3.1 1.1 1 0 0 1 1 1 1 Cobalt transport protein CcoS PF03597.10 gi|385803669|ref|YP_005840069.1| - 8.8 5.8 6.1 2 7.9 0.0 2.6 3 0 0 3 3 3 0 Cytochrome oxidase maturation protein cbb3-type CbiM PF01891.11 gi|385803670|ref|YP_005840070.1| - 1.1e-32 113.3 22.8 1.2e-32 113.1 15.8 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF3816 PF12822.2 gi|385803670|ref|YP_005840070.1| - 0.00067 19.5 19.1 0.00067 19.5 13.3 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF3816) DUF1370 PF07114.6 gi|385803670|ref|YP_005840070.1| - 2.6 7.2 7.1 0.68 9.1 0.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1370) Thiolase_N PF00108.18 gi|385803671|ref|YP_005840071.1| - 6.4e-13 48.2 0.3 7.1e-11 41.5 0.0 2.2 2 0 0 2 2 2 2 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|385803671|ref|YP_005840071.1| - 1e-10 41.5 6.7 8.6e-10 38.5 1.8 3.3 3 1 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.13 gi|385803671|ref|YP_005840071.1| - 4.8e-10 38.9 0.1 2.7e-09 36.4 0.1 2.2 2 0 0 2 2 2 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.17 gi|385803671|ref|YP_005840071.1| - 0.00054 19.7 0.3 1.3 8.8 0.0 3.4 3 0 0 3 3 3 2 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.5 gi|385803671|ref|YP_005840071.1| - 0.016 14.8 1.2 0.78 9.4 0.2 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF35 PF01796.12 gi|385803672|ref|YP_005840072.1| - 1.1e-08 35.1 1.4 1.5e-08 34.7 0.9 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|385803672|ref|YP_005840072.1| - 0.00024 20.9 1.2 0.00038 20.2 0.3 1.7 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.2 gi|385803672|ref|YP_005840072.1| - 0.03 14.1 0.1 0.049 13.4 0.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Nudix_N_2 PF14803.1 gi|385803672|ref|YP_005840072.1| - 0.073 12.7 0.5 0.13 11.9 0.3 1.5 1 0 0 1 1 1 0 Nudix N-terminal TF_Zn_Ribbon PF08271.7 gi|385803672|ref|YP_005840072.1| - 0.078 12.3 0.1 0.16 11.3 0.1 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|385803672|ref|YP_005840072.1| - 0.14 11.3 0.4 0.26 10.5 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain adh_short PF00106.20 gi|385803673|ref|YP_005840073.1| - 2.6e-43 147.8 0.3 3.2e-43 147.5 0.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|385803673|ref|YP_005840073.1| - 1e-22 80.6 0.2 1.4e-22 80.2 0.1 1.1 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|385803673|ref|YP_005840073.1| - 1.4e-18 67.5 0.6 1.7e-18 67.3 0.4 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|385803673|ref|YP_005840073.1| - 3.2e-05 23.5 0.3 5.2e-05 22.7 0.2 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.14 gi|385803673|ref|YP_005840073.1| - 0.0061 15.6 0.4 0.18 10.8 0.0 2.2 1 1 1 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 3Beta_HSD PF01073.14 gi|385803673|ref|YP_005840073.1| - 0.0088 14.7 0.6 0.012 14.2 0.4 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|385803673|ref|YP_005840073.1| - 0.016 15.2 1.2 0.022 14.7 0.9 1.4 1 1 0 1 1 1 0 NADH(P)-binding NmrA PF05368.8 gi|385803673|ref|YP_005840073.1| - 0.072 12.3 1.7 0.071 12.3 0.4 1.6 2 1 0 2 2 2 0 NmrA-like family Abhydrolase_1 PF00561.15 gi|385803674|ref|YP_005840074.1| - 4.2e-19 69.0 0.0 6.8e-19 68.3 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|385803674|ref|YP_005840074.1| - 2.3e-11 44.0 0.0 5.2e-11 42.8 0.0 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family PhaC_N PF07167.8 gi|385803674|ref|YP_005840074.1| - 1.2e-09 37.8 0.0 2e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Abhydrolase_5 PF12695.2 gi|385803674|ref|YP_005840074.1| - 2.4e-09 37.0 0.0 2e-08 34.1 0.0 2.2 1 1 0 1 1 1 1 Alpha/beta hydrolase family HHH_5 PF14520.1 gi|385803674|ref|YP_005840074.1| - 1e-06 28.7 0.2 4.7e-06 26.6 0.1 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain DLH PF01738.13 gi|385803674|ref|YP_005840074.1| - 6.2e-05 22.3 0.0 0.0018 17.5 0.0 2.5 3 0 0 3 3 3 1 Dienelactone hydrolase family DUF3141 PF11339.3 gi|385803674|ref|YP_005840074.1| - 8.3e-05 21.1 0.0 0.00032 19.1 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3141) DUF4332 PF14229.1 gi|385803674|ref|YP_005840074.1| - 0.00018 21.4 0.0 0.00047 20.1 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) PHB_depo_C PF06850.6 gi|385803674|ref|YP_005840074.1| - 0.0015 17.7 0.0 0.0033 16.6 0.0 1.6 1 0 0 1 1 1 1 PHB de-polymerase C-terminus Cdd1 PF11731.3 gi|385803674|ref|YP_005840074.1| - 0.0071 16.2 0.0 0.016 15.1 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.4 gi|385803674|ref|YP_005840074.1| - 0.0072 15.8 0.0 0.015 14.8 0.0 1.5 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda TfoX_C PF04994.8 gi|385803674|ref|YP_005840074.1| - 0.017 15.0 0.0 0.033 14.0 0.0 1.5 1 0 0 1 1 1 0 TfoX C-terminal domain DUF2048 PF09752.4 gi|385803674|ref|YP_005840074.1| - 0.028 13.2 0.2 1.9 7.2 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2048) FSH1 PF03959.8 gi|385803674|ref|YP_005840074.1| - 0.049 13.0 0.0 0.22 10.9 0.0 1.9 2 0 0 2 2 2 0 Serine hydrolase (FSH1) PHA_synth_III_E PF09712.5 gi|385803675|ref|YP_005840075.1| - 8.2e-10 38.5 1.4 8.2e-10 38.5 1.0 2.3 1 1 2 3 3 3 2 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) Phasin PF05597.6 gi|385803675|ref|YP_005840075.1| - 0.093 12.4 1.9 0.91 9.2 0.0 2.5 2 1 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) KCNQ_channel PF03520.9 gi|385803675|ref|YP_005840075.1| - 0.11 11.8 0.5 0.22 10.8 0.2 1.7 2 1 0 2 2 2 0 KCNQ voltage-gated potassium channel IMD PF08397.6 gi|385803675|ref|YP_005840075.1| - 0.11 11.7 1.9 0.43 9.8 0.1 2.3 2 1 0 2 2 2 0 IRSp53/MIM homology domain FliD_C PF07195.7 gi|385803675|ref|YP_005840075.1| - 0.13 11.5 2.9 0.43 9.8 2.0 1.8 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Phasin_2 PF09361.5 gi|385803675|ref|YP_005840075.1| - 0.27 11.3 7.0 42 4.2 0.0 3.2 2 1 0 2 2 2 0 Phasin protein DUF4226 PF10774.4 gi|385803676|ref|YP_005840076.1| - 0.0076 16.2 2.5 0.03 14.3 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4226) Phasin_2 PF09361.5 gi|385803676|ref|YP_005840076.1| - 0.024 14.6 6.1 0.26 11.3 0.1 3.0 1 1 2 3 3 3 0 Phasin protein DUF2580 PF10824.3 gi|385803676|ref|YP_005840076.1| - 0.041 14.2 3.8 3.3 8.0 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2580) Helicase_IV_N PF12462.3 gi|385803676|ref|YP_005840076.1| - 0.046 13.3 0.3 0.11 12.1 0.0 1.7 2 0 0 2 2 2 0 DNA helicase IV / RNA helicase N terminal Tape_meas_lam_C PF09718.5 gi|385803676|ref|YP_005840076.1| - 0.054 13.4 4.5 5.9 6.8 0.0 2.9 1 1 2 3 3 3 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) PMEI PF04043.10 gi|385803676|ref|YP_005840076.1| - 0.09 12.6 0.8 0.16 11.9 0.5 1.6 1 1 0 1 1 1 0 Plant invertase/pectin methylesterase inhibitor KfrA_N PF11740.3 gi|385803676|ref|YP_005840076.1| - 0.24 11.8 6.4 0.15 12.4 0.6 2.1 1 1 1 2 2 2 0 Plasmid replication region DNA-binding N-term YtxH PF12732.2 gi|385803676|ref|YP_005840076.1| - 0.34 11.3 3.7 0.54 10.6 0.7 2.4 2 1 0 2 2 2 0 YtxH-like protein DUF2508 PF10704.4 gi|385803676|ref|YP_005840076.1| - 0.59 10.3 2.4 4.4 7.5 0.2 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF2508) WXG100 PF06013.7 gi|385803676|ref|YP_005840076.1| - 1.4 8.9 6.5 0.54 10.2 0.9 2.4 2 1 0 2 2 2 0 Proteins of 100 residues with WXG RepB-RCR_reg PF10723.4 gi|385803677|ref|YP_005840077.1| - 0.05 13.3 0.0 0.077 12.7 0.0 1.2 1 0 0 1 1 1 0 Replication regulatory protein RepB Antitoxin-MazE PF04014.13 gi|385803677|ref|YP_005840077.1| - 0.096 12.4 0.5 0.2 11.4 0.3 1.5 1 0 0 1 1 1 0 Antidote-toxin recognition MazE MaoC_dehydratas PF01575.14 gi|385803678|ref|YP_005840078.1| - 9.7e-22 76.6 0.1 1.6e-21 75.9 0.1 1.3 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|385803678|ref|YP_005840078.1| - 7.8e-07 28.9 0.4 2.1e-06 27.5 0.0 1.9 2 1 0 2 2 2 1 N-terminal half of MaoC dehydratase 4HBT PF03061.17 gi|385803678|ref|YP_005840078.1| - 0.053 13.6 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Thioesterase superfamily 4HBT_2 PF13279.1 gi|385803678|ref|YP_005840078.1| - 0.07 13.5 0.0 0.3 11.5 0.0 1.7 1 1 1 2 2 2 0 Thioesterase-like superfamily AP_endonuc_2 PF01261.19 gi|385803679|ref|YP_005840079.1| - 2.1e-17 63.1 0.1 3e-17 62.6 0.1 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel tRNA-synt_1 PF00133.17 gi|385803680|ref|YP_005840080.1| - 6.7e-71 239.0 7.0 3.6e-27 94.6 0.0 4.9 1 1 3 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.1 gi|385803680|ref|YP_005840080.1| - 2.4e-54 183.4 0.0 4.1e-54 182.6 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.6 gi|385803680|ref|YP_005840080.1| - 4.2e-41 140.8 0.3 9.6e-26 90.3 0.1 4.1 3 1 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|385803680|ref|YP_005840080.1| - 2.9e-15 56.3 0.0 5.8e-15 55.3 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|385803680|ref|YP_005840080.1| - 4.8e-09 35.7 0.3 1.3e-05 24.5 0.0 3.0 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|385803680|ref|YP_005840080.1| - 2.8e-05 22.9 0.0 0.0077 14.9 0.0 2.7 2 0 0 2 2 2 2 tRNA synthetases class I (K) DZR PF12773.2 gi|385803680|ref|YP_005840080.1| - 0.00014 21.6 2.7 0.3 10.9 0.2 2.5 2 0 0 2 2 2 2 Double zinc ribbon tRNA-synt_1d PF00750.14 gi|385803680|ref|YP_005840080.1| - 0.0058 15.5 0.0 1.3 7.7 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (R) DNA_ligase_ZBD PF03119.11 gi|385803680|ref|YP_005840080.1| - 0.014 15.0 4.2 0.31 10.7 0.0 3.1 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain tRNA-synt_1b PF00579.20 gi|385803680|ref|YP_005840080.1| - 0.033 13.3 0.1 0.11 11.5 0.0 1.8 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) DUF2570 PF10828.3 gi|385803680|ref|YP_005840080.1| - 0.1 12.1 0.0 1.4 8.5 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2570) Nudix_N_2 PF14803.1 gi|385803680|ref|YP_005840080.1| - 0.76 9.5 3.1 29 4.4 0.1 3.7 3 0 0 3 3 3 0 Nudix N-terminal TF_Zn_Ribbon PF08271.7 gi|385803680|ref|YP_005840080.1| - 1.2 8.4 9.5 20 4.6 0.1 3.6 3 0 0 3 3 3 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|385803680|ref|YP_005840080.1| - 1.5 8.8 3.6 2.9 7.9 0.1 2.9 3 0 0 3 3 3 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|385803680|ref|YP_005840080.1| - 2.5 7.4 7.5 6.8 6.0 0.6 3.1 2 1 1 3 3 3 0 zinc-ribbon domain QueC PF06508.8 gi|385803681|ref|YP_005840081.1| - 0.15 11.3 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC PMSR PF01625.16 gi|385803683|ref|YP_005840083.1| - 6.6e-39 133.2 0.0 8.8e-39 132.8 0.0 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase FAD_binding_4 PF01565.18 gi|385803684|ref|YP_005840084.1| - 8.9e-32 109.4 2.7 1.6e-31 108.6 1.9 1.4 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.7 gi|385803684|ref|YP_005840084.1| - 2.4e-09 36.9 0.0 4.9e-09 35.9 0.0 1.6 1 0 0 1 1 1 1 Berberine and berberine like Cytokin-bind PF09265.5 gi|385803684|ref|YP_005840084.1| - 0.026 13.6 0.3 0.071 12.2 0.2 1.7 1 1 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding Lactamase_B_2 PF12706.2 gi|385803685|ref|YP_005840085.1| - 1.6e-05 24.5 4.0 0.0025 17.3 1.0 3.2 2 1 0 2 2 2 2 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|385803685|ref|YP_005840085.1| - 0.00014 21.6 0.0 0.00033 20.3 0.0 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase DNA_ligase_A_N PF04675.9 gi|385803686|ref|YP_005840086.1| - 3.3e-42 144.2 0.0 8.6e-42 142.9 0.0 1.7 1 1 1 2 2 2 1 DNA ligase N terminus DNA_ligase_A_M PF01068.16 gi|385803686|ref|YP_005840086.1| - 9.5e-41 139.3 0.0 3.9e-40 137.3 0.0 1.9 1 1 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_C PF04679.10 gi|385803686|ref|YP_005840086.1| - 2.4e-13 50.3 0.0 2.1e-12 47.2 0.0 2.5 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region mRNA_cap_enzyme PF01331.14 gi|385803686|ref|YP_005840086.1| - 0.048 13.3 0.0 0.13 11.9 0.0 1.7 2 0 0 2 2 2 0 mRNA capping enzyme, catalytic domain Rhomboid PF01694.17 gi|385803688|ref|YP_005840088.1| - 2.2e-21 76.4 13.4 3.1e-21 75.9 9.3 1.2 1 0 0 1 1 1 1 Rhomboid family DUF1751 PF08551.5 gi|385803688|ref|YP_005840088.1| - 2.5e-05 24.5 0.4 2.5e-05 24.5 0.3 1.9 2 0 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) DUF3040 PF11239.3 gi|385803689|ref|YP_005840089.1| - 0.0066 16.4 0.0 0.0095 15.9 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3040) Methyltransf_11 PF08241.7 gi|385803691|ref|YP_005840091.1| - 7.2e-12 45.6 0.0 1.3e-11 44.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385803691|ref|YP_005840091.1| - 1.9e-11 43.7 0.0 2.2e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|385803691|ref|YP_005840091.1| - 3.8e-11 42.9 0.0 5.6e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.7 gi|385803691|ref|YP_005840091.1| - 6.9e-09 36.0 0.0 1.5e-08 34.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385803691|ref|YP_005840091.1| - 6.8e-08 33.0 0.0 1.5e-07 31.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|385803691|ref|YP_005840091.1| - 1.6e-07 31.5 0.0 2.9e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|385803691|ref|YP_005840091.1| - 1.1e-06 28.4 0.0 1.9e-06 27.6 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|385803691|ref|YP_005840091.1| - 8.2e-06 25.8 0.7 2.1e-05 24.4 0.1 1.7 1 1 0 2 2 2 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|385803691|ref|YP_005840091.1| - 2.7e-05 23.3 0.0 4.2e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Ubie_methyltran PF01209.13 gi|385803691|ref|YP_005840091.1| - 0.00018 20.7 0.0 0.00028 20.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|385803691|ref|YP_005840091.1| - 0.00087 18.4 0.0 0.0012 18.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase FtsJ PF01728.14 gi|385803691|ref|YP_005840091.1| - 0.0057 16.6 0.0 0.0065 16.4 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase MTS PF05175.9 gi|385803691|ref|YP_005840091.1| - 0.0059 15.9 0.0 0.011 15.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain GCD14 PF08704.5 gi|385803691|ref|YP_005840091.1| - 0.016 14.6 0.0 0.025 14.0 0.0 1.3 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Fibrillarin PF01269.12 gi|385803691|ref|YP_005840091.1| - 0.06 12.2 0.0 0.083 11.7 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin Methyltransf_32 PF13679.1 gi|385803691|ref|YP_005840091.1| - 0.085 12.5 0.0 0.16 11.6 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Na_Ca_ex PF01699.19 gi|385803693|ref|YP_005840093.1| - 9.8e-38 128.9 32.5 2.6e-20 72.4 8.4 2.3 2 1 0 2 2 2 2 Sodium/calcium exchanger protein 2TM PF13239.1 gi|385803693|ref|YP_005840093.1| - 0.13 12.3 0.1 0.13 12.3 0.1 2.5 3 0 0 3 3 3 0 2TM domain NAD_binding_10 PF13460.1 gi|385803694|ref|YP_005840094.1| - 2.6e-23 82.9 0.1 4.3e-23 82.2 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|385803694|ref|YP_005840094.1| - 1.6e-11 43.9 0.0 2e-11 43.5 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|385803694|ref|YP_005840094.1| - 5.3e-10 39.1 0.0 7.3e-09 35.4 0.0 2.3 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|385803694|ref|YP_005840094.1| - 3.4e-07 29.4 0.0 6.9e-05 21.8 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|385803694|ref|YP_005840094.1| - 1.9e-05 23.5 0.0 3.4e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|385803694|ref|YP_005840094.1| - 0.0014 17.6 0.3 0.014 14.2 0.0 2.4 3 0 0 3 3 3 1 Male sterility protein DapB_N PF01113.15 gi|385803694|ref|YP_005840094.1| - 0.0022 17.9 0.0 0.0042 16.9 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|385803694|ref|YP_005840094.1| - 0.0031 17.7 0.0 0.0084 16.4 0.0 1.7 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain adh_short PF00106.20 gi|385803694|ref|YP_005840094.1| - 0.014 15.3 0.0 0.034 14.0 0.0 1.7 1 1 0 1 1 1 0 short chain dehydrogenase Glyco_trans_4_4 PF13579.1 gi|385803694|ref|YP_005840094.1| - 2.5 8.2 6.0 3.7 7.6 0.0 2.9 1 1 1 3 3 3 0 Glycosyl transferase 4-like domain Fer2 PF00111.22 gi|385803695|ref|YP_005840095.1| - 1.3e-07 31.2 2.9 1.9e-06 27.4 2.0 2.4 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain zf-C3HC4 PF00097.20 gi|385803695|ref|YP_005840095.1| - 0.3 10.7 1.5 2.6 7.8 0.3 2.3 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Fer2_3 PF13085.1 gi|385803695|ref|YP_005840095.1| - 0.67 9.7 2.9 2.4 8.0 2.0 2.1 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain A2L_zn_ribbon PF08792.5 gi|385803696|ref|YP_005840096.1| - 0.01 15.2 0.5 0.016 14.6 0.3 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain DUF2318 PF10080.4 gi|385803696|ref|YP_005840096.1| - 0.024 14.3 0.2 0.027 14.2 0.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Prok-RING_1 PF14446.1 gi|385803696|ref|YP_005840096.1| - 0.034 13.8 1.1 0.047 13.4 0.8 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 RNA_POL_M_15KD PF02150.11 gi|385803696|ref|YP_005840096.1| - 0.045 13.4 1.8 2.8 7.7 0.1 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit GCC2_GCC3 PF07699.8 gi|385803696|ref|YP_005840096.1| - 0.23 11.0 1.9 0.32 10.6 1.3 1.2 1 0 0 1 1 1 0 GCC2 and GCC3 Tnp_DNA_bind PF14706.1 gi|385803697|ref|YP_005840097.1| - 2.7e-26 91.0 0.0 4.6e-26 90.2 0.0 1.4 1 0 0 1 1 1 1 Transposase DNA-binding DDE_Tnp_1 PF01609.16 gi|385803697|ref|YP_005840097.1| - 4.3e-05 23.1 0.2 7.8e-05 22.3 0.1 1.5 1 1 0 1 1 1 1 Transposase DDE domain Dimer_Tnp_Tn5 PF02281.11 gi|385803697|ref|YP_005840097.1| - 0.058 13.5 0.1 0.15 12.1 0.0 1.7 2 0 0 2 2 2 0 Transposase Tn5 dimerisation domain DUF2155 PF09923.4 gi|385803697|ref|YP_005840097.1| - 0.13 12.3 0.0 0.26 11.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2155) FUN14 PF04930.10 gi|385803698|ref|YP_005840098.1| - 8.5e-20 70.8 2.2 1e-19 70.6 1.5 1.0 1 0 0 1 1 1 1 FUN14 family DUF4646 PF15496.1 gi|385803698|ref|YP_005840098.1| - 0.084 12.9 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4646) ATPase_gene1 PF09527.5 gi|385803698|ref|YP_005840098.1| - 0.58 10.0 9.0 0.36 10.6 2.4 2.6 2 1 0 2 2 2 0 Putative F0F1-ATPase subunit (ATPase_gene1) MMR_HSR1 PF01926.18 gi|385803699|ref|YP_005840099.1| - 1.8e-18 66.5 0.0 5.5e-18 65.0 0.0 1.9 2 0 0 2 2 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|385803699|ref|YP_005840099.1| - 2.8e-11 43.2 0.0 7.3e-11 41.8 0.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP-bdg_N PF13167.1 gi|385803699|ref|YP_005840099.1| - 4.2e-11 42.8 0.0 1.2e-10 41.3 0.0 1.8 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal cobW PF02492.14 gi|385803699|ref|YP_005840099.1| - 3.2e-06 26.7 0.2 0.0005 19.5 0.0 2.6 1 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.13 gi|385803699|ref|YP_005840099.1| - 0.00021 20.5 0.0 0.25 10.5 0.0 3.0 3 0 0 3 3 3 2 Ferrous iron transport protein B AAA_18 PF13238.1 gi|385803699|ref|YP_005840099.1| - 0.00081 19.7 0.0 0.0091 16.2 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|385803699|ref|YP_005840099.1| - 0.0037 18.0 2.0 0.038 14.8 0.0 3.0 2 2 1 3 3 3 1 AAA domain Miro PF08477.8 gi|385803699|ref|YP_005840099.1| - 0.0039 17.6 0.0 0.018 15.5 0.0 2.1 1 1 0 1 1 1 1 Miro-like protein AAA_22 PF13401.1 gi|385803699|ref|YP_005840099.1| - 0.0062 16.6 0.1 0.035 14.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|385803699|ref|YP_005840099.1| - 0.023 14.3 0.0 0.07 12.8 0.0 1.9 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Nif11 PF07862.6 gi|385803699|ref|YP_005840099.1| - 0.027 14.4 0.5 0.089 12.7 0.0 2.2 2 0 0 2 2 2 0 Nitrogen fixation protein of unknown function Arf PF00025.16 gi|385803699|ref|YP_005840099.1| - 0.051 12.8 0.1 3.9 6.6 0.0 2.5 2 0 0 2 2 2 0 ADP-ribosylation factor family AAA_14 PF13173.1 gi|385803699|ref|YP_005840099.1| - 0.068 13.0 0.0 0.35 10.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.18 gi|385803699|ref|YP_005840099.1| - 0.26 11.1 6.3 2.6 7.8 0.0 3.3 3 1 1 4 4 4 0 Dynamin family Neur_chan_memb PF02932.11 gi|385803699|ref|YP_005840099.1| - 4 7.2 5.6 16 5.2 4.3 1.6 2 0 0 2 2 2 0 Neurotransmitter-gated ion-channel transmembrane region MoaC PF01967.16 gi|385803700|ref|YP_005840100.1| - 2.2e-43 147.1 2.2 2.7e-43 146.9 1.5 1.1 1 0 0 1 1 1 1 MoaC family Carb_kinase PF01256.12 gi|385803701|ref|YP_005840101.1| - 5.3e-49 166.7 1.9 9.6e-49 165.8 1.3 1.4 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|385803701|ref|YP_005840101.1| - 1.7e-42 144.8 0.1 3.7e-42 143.7 0.1 1.6 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.10 gi|385803701|ref|YP_005840101.1| - 0.0018 17.4 0.2 0.0031 16.7 0.1 1.3 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family MFS_1 PF07690.11 gi|385803702|ref|YP_005840102.1| - 4.1e-31 107.9 48.8 4.1e-31 107.9 33.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily zf-FCS PF06467.9 gi|385803703|ref|YP_005840103.1| - 2.5e-05 23.8 1.3 4.3e-05 23.0 0.9 1.4 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF3330 PF11809.3 gi|385803703|ref|YP_005840103.1| - 0.0052 16.6 1.8 0.0063 16.3 1.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3330) DUF2116 PF09889.4 gi|385803703|ref|YP_005840103.1| - 0.013 15.2 2.7 0.18 11.6 0.2 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Ecl1 PF12855.2 gi|385803703|ref|YP_005840103.1| - 0.034 13.4 0.1 0.051 12.8 0.1 1.3 1 0 0 1 1 1 0 Life-span regulatory factor DZR PF12773.2 gi|385803703|ref|YP_005840103.1| - 0.036 13.8 0.9 0.053 13.3 0.6 1.3 1 1 0 1 1 1 0 Double zinc ribbon YHS PF04945.8 gi|385803703|ref|YP_005840103.1| - 0.046 13.5 1.8 0.083 12.7 1.2 1.3 1 0 0 1 1 1 0 YHS domain DUF329 PF03884.9 gi|385803703|ref|YP_005840103.1| - 0.1 12.1 2.6 1.8 8.2 1.5 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF329) zf-C2H2_3 PF13878.1 gi|385803703|ref|YP_005840103.1| - 0.11 12.1 2.1 5.5 6.6 0.1 2.4 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO NosL PF05573.7 gi|385803703|ref|YP_005840103.1| - 0.13 11.9 0.1 0.14 11.8 0.1 1.0 1 0 0 1 1 1 0 NosL NAD_binding_1 PF00175.16 gi|385803704|ref|YP_005840104.1| - 3.3e-16 59.8 0.0 4.8e-16 59.2 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|385803704|ref|YP_005840104.1| - 7.3e-06 26.0 0.0 1.1e-05 25.4 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain HTH_20 PF12840.2 gi|385803705|ref|YP_005840105.1| - 1.7e-08 34.1 0.0 2.6e-08 33.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|385803705|ref|YP_005840105.1| - 0.00066 19.0 0.1 0.0012 18.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|385803705|ref|YP_005840105.1| - 0.0039 16.7 0.0 0.0074 15.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|385803705|ref|YP_005840105.1| - 0.0062 16.1 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|385803705|ref|YP_005840105.1| - 0.0087 15.7 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|385803705|ref|YP_005840105.1| - 0.01 15.5 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FUR PF01475.14 gi|385803705|ref|YP_005840105.1| - 0.074 12.9 0.0 0.095 12.6 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family MarR PF01047.17 gi|385803705|ref|YP_005840105.1| - 0.11 12.2 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 MarR family Usp PF00582.21 gi|385803706|ref|YP_005840106.1| - 2.7e-38 131.2 2.2 3.1e-38 131.1 1.5 1.0 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.11 gi|385803706|ref|YP_005840106.1| - 0.0042 17.6 0.1 0.0057 17.1 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase B12-binding PF02310.14 gi|385803706|ref|YP_005840106.1| - 0.041 13.7 0.1 0.058 13.2 0.1 1.3 1 0 0 1 1 1 0 B12 binding domain Glu_synthase PF01645.12 gi|385803706|ref|YP_005840106.1| - 0.071 12.0 0.2 0.087 11.7 0.1 1.1 1 0 0 1 1 1 0 Conserved region in glutamate synthase Imm1 PF14430.1 gi|385803706|ref|YP_005840106.1| - 0.12 12.4 0.4 0.17 12.0 0.2 1.3 1 1 0 1 1 1 0 Immunity protein Imm1 ETF PF01012.16 gi|385803706|ref|YP_005840106.1| - 0.18 11.5 5.9 2.3 7.9 4.1 2.5 1 1 0 1 1 1 0 Electron transfer flavoprotein domain RIO1 PF01163.17 gi|385803707|ref|YP_005840107.1| - 1.2e-12 47.5 0.0 2e-12 46.8 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|385803707|ref|YP_005840107.1| - 1.6e-09 37.1 0.0 2.6e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|385803707|ref|YP_005840107.1| - 7.3e-06 25.8 0.8 0.00016 21.5 0.6 2.8 1 1 0 1 1 1 1 Phosphotransferase enzyme family Pkinase PF00069.20 gi|385803707|ref|YP_005840107.1| - 0.00037 19.7 0.0 0.00052 19.2 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|385803707|ref|YP_005840107.1| - 0.022 13.9 0.0 0.031 13.5 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) APH_6_hur PF04655.9 gi|385803707|ref|YP_005840107.1| - 0.043 12.9 0.0 0.061 12.4 0.0 1.3 1 0 0 1 1 1 0 Aminoglycoside/hydroxyurea antibiotic resistance kinase Polyketide_cyc2 PF10604.4 gi|385803709|ref|YP_005840109.1| - 3.7e-14 53.0 0.5 4.2e-14 52.8 0.4 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.8 gi|385803709|ref|YP_005840109.1| - 0.00048 19.7 0.0 0.0011 18.6 0.0 1.5 1 1 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc PF03364.15 gi|385803709|ref|YP_005840109.1| - 0.015 15.2 0.1 0.02 14.8 0.1 1.2 1 0 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport FaeA PF04703.7 gi|385803710|ref|YP_005840110.1| - 0.0011 19.1 0.1 0.0012 18.8 0.1 1.2 1 0 0 1 1 1 1 FaeA-like protein HTH_AsnC-type PF13404.1 gi|385803710|ref|YP_005840110.1| - 0.066 12.7 0.0 0.16 11.4 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|385803710|ref|YP_005840110.1| - 0.098 12.0 0.1 0.36 10.2 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TrkA_N PF02254.13 gi|385803711|ref|YP_005840111.1| - 2.9e-41 140.1 11.2 6e-22 77.8 1.6 2.8 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|385803711|ref|YP_005840111.1| - 1.5e-27 94.9 1.8 3.6e-13 48.8 0.0 2.9 2 0 0 2 2 2 2 TrkA-C domain Ion_trans_2 PF07885.11 gi|385803711|ref|YP_005840111.1| - 0.00058 19.5 5.1 0.0011 18.5 3.5 1.5 1 0 0 1 1 1 1 Ion channel AdoHcyase_NAD PF00670.16 gi|385803711|ref|YP_005840111.1| - 0.0017 18.2 0.1 0.43 10.4 0.0 2.5 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_7 PF13241.1 gi|385803711|ref|YP_005840111.1| - 0.0019 18.4 5.1 0.0084 16.3 0.1 3.6 2 1 2 5 5 5 1 Putative NAD(P)-binding ThiF PF00899.16 gi|385803711|ref|YP_005840111.1| - 0.019 14.7 0.0 0.082 12.7 0.0 2.1 1 0 0 1 1 1 0 ThiF family 2-Hacid_dh_C PF02826.14 gi|385803711|ref|YP_005840111.1| - 0.022 13.9 0.0 0.042 13.0 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EmrE PF13536.1 gi|385803711|ref|YP_005840111.1| - 0.034 14.3 4.6 4.6 7.4 0.1 2.3 1 1 1 2 2 2 0 Multidrug resistance efflux transporter DUF3391 PF11871.3 gi|385803711|ref|YP_005840111.1| - 0.049 13.8 0.2 0.99 9.6 0.0 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF3391) AlaDh_PNT_C PF01262.16 gi|385803711|ref|YP_005840111.1| - 0.059 12.9 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Xan_ur_permease PF00860.15 gi|385803711|ref|YP_005840111.1| - 0.081 11.3 2.4 0.12 10.8 1.7 1.2 1 0 0 1 1 1 0 Permease family COX3 PF00510.13 gi|385803712|ref|YP_005840112.1| - 6.3e-37 127.4 18.9 1.2e-36 126.5 13.1 1.3 1 0 0 1 1 1 1 Cytochrome c oxidase subunit III DUF3464 PF11947.3 gi|385803712|ref|YP_005840112.1| - 4.4 6.7 5.5 32 3.9 1.8 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3464) SQS_PSY PF00494.14 gi|385803713|ref|YP_005840113.1| - 2.3e-44 151.6 0.8 2.8e-44 151.4 0.5 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase DUF1414 PF07208.6 gi|385803713|ref|YP_005840113.1| - 0.039 13.6 0.0 0.12 12.1 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1414) CDP-OH_P_transf PF01066.16 gi|385803715|ref|YP_005840115.1| - 5.7e-10 39.4 8.2 5.7e-10 39.4 5.7 2.4 3 0 0 3 3 3 1 CDP-alcohol phosphatidyltransferase Copper-bind PF00127.15 gi|385803716|ref|YP_005840116.1| - 3.5e-17 62.4 0.0 5.7e-17 61.7 0.0 1.3 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|385803716|ref|YP_005840116.1| - 0.00013 21.8 0.0 0.077 12.8 0.0 2.1 2 0 0 2 2 2 2 Cupredoxin-like domain TAT_signal PF10518.4 gi|385803716|ref|YP_005840116.1| - 0.032 14.2 0.4 0.067 13.2 0.3 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SURNod19 PF07712.7 gi|385803716|ref|YP_005840116.1| - 0.052 11.9 0.3 0.071 11.5 0.2 1.1 1 0 0 1 1 1 0 Stress up-regulated Nod 19 SnoaL_3 PF13474.1 gi|385803716|ref|YP_005840116.1| - 0.06 13.3 0.3 5.5 7.0 0.1 2.2 1 1 1 2 2 2 0 SnoaL-like domain Ribosomal_S3Ae PF01015.13 gi|385803717|ref|YP_005840117.1| - 3.6e-67 225.4 0.2 4.3e-67 225.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Tmemb_cc2 PF10267.4 gi|385803718|ref|YP_005840118.1| - 0.67 8.4 8.8 0.91 8.0 6.1 1.2 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein Ribosomal_S13_N PF08069.7 gi|385803720|ref|YP_005840120.1| - 1e-23 82.8 0.1 1.6e-23 82.2 0.1 1.3 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|385803720|ref|YP_005840120.1| - 9.5e-22 76.5 0.5 1.4e-21 76.0 0.3 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 DUF3675 PF12428.3 gi|385803721|ref|YP_005840121.1| - 0.072 13.3 0.2 0.16 12.2 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3675) DUF4065 PF13274.1 gi|385803722|ref|YP_005840122.1| - 2.1e-08 34.8 0.3 4e-08 33.9 0.1 1.6 1 1 1 2 2 2 1 Protein of unknown function (DUF4065) YaeQ PF07152.7 gi|385803722|ref|YP_005840122.1| - 0.086 12.1 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 YaeQ protein Adenine_glyco PF03352.8 gi|385803723|ref|YP_005840123.1| - 0.00083 18.9 0.2 0.00083 18.9 0.2 1.0 1 0 0 1 1 1 1 Methyladenine glycosylase HTH_24 PF13412.1 gi|385803725|ref|YP_005840125.1| - 0.00064 19.0 0.0 0.0011 18.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MotA_activ PF09114.5 gi|385803725|ref|YP_005840125.1| - 0.0023 17.6 0.1 0.0026 17.4 0.0 1.1 1 0 0 1 1 1 1 Transcription factor MotA, activation domain HTH_12 PF08461.5 gi|385803725|ref|YP_005840125.1| - 0.0038 16.9 0.0 0.0067 16.1 0.0 1.6 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain FerA PF08165.6 gi|385803725|ref|YP_005840125.1| - 0.022 14.4 0.2 7.8 6.2 0.0 2.3 2 0 0 2 2 2 0 FerA (NUC095) domain HTH_5 PF01022.15 gi|385803725|ref|YP_005840125.1| - 0.043 13.4 0.3 0.11 12.1 0.2 1.7 1 1 1 2 2 2 0 Bacterial regulatory protein, arsR family DUF2513 PF10711.4 gi|385803725|ref|YP_005840125.1| - 0.087 12.9 0.0 0.18 11.9 0.0 1.5 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_20 PF12840.2 gi|385803725|ref|YP_005840125.1| - 0.15 11.9 0.2 0.6 9.9 0.0 2.0 1 1 1 2 2 2 0 Helix-turn-helix domain DUF262 PF03235.9 gi|385803726|ref|YP_005840126.1| - 3e-26 92.7 6.0 3e-26 92.7 4.2 2.9 3 0 0 3 3 3 1 Protein of unknown function DUF262 DUF1524 PF07510.6 gi|385803726|ref|YP_005840126.1| - 7.2e-19 68.0 3.6 1.7e-17 63.6 1.2 2.7 2 0 0 2 2 2 2 Protein of unknown function (DUF1524) DUF45 PF01863.12 gi|385803727|ref|YP_005840127.1| - 2e-58 197.5 3.1 2.4e-58 197.3 1.8 1.3 1 1 1 2 2 2 1 Protein of unknown function DUF45 WLM PF08325.5 gi|385803727|ref|YP_005840127.1| - 4.9e-05 23.2 0.3 0.00012 22.0 0.2 1.6 1 0 0 1 1 1 1 WLM domain DUF4230 PF14014.1 gi|385803727|ref|YP_005840127.1| - 0.01 15.6 1.5 0.015 15.2 0.6 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4230) SprT-like PF10263.4 gi|385803727|ref|YP_005840127.1| - 0.029 14.0 0.0 0.063 12.9 0.0 1.5 1 1 0 1 1 1 0 SprT-like family HSDR_N PF04313.9 gi|385803728|ref|YP_005840128.1| - 1.2e-36 126.2 0.0 1.2e-36 126.2 0.0 3.1 4 0 0 4 4 4 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.10 gi|385803728|ref|YP_005840128.1| - 5.8e-18 65.3 0.0 1.7e-17 63.8 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF3387 PF11867.3 gi|385803728|ref|YP_005840128.1| - 7.3e-13 48.1 7.0 1.9e-12 46.8 4.8 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3387) Helicase_C PF00271.26 gi|385803728|ref|YP_005840128.1| - 0.0064 16.3 0.0 0.039 13.8 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain AAA_22 PF13401.1 gi|385803728|ref|YP_005840128.1| - 0.028 14.5 0.0 0.23 11.5 0.0 2.6 2 0 0 2 2 2 0 AAA domain Helicase_C_2 PF13307.1 gi|385803728|ref|YP_005840128.1| - 0.033 14.1 0.2 20 5.1 0.0 3.4 2 1 0 2 2 2 0 Helicase C-terminal domain AAA_10 PF12846.2 gi|385803728|ref|YP_005840128.1| - 0.037 13.4 2.4 0.69 9.2 0.0 3.5 3 1 1 4 4 4 0 AAA-like domain Methylase_S PF01420.14 gi|385803729|ref|YP_005840129.1| - 4.6e-41 140.5 0.0 3.8e-22 79.0 0.0 2.2 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain DUF2443 PF10398.4 gi|385803729|ref|YP_005840129.1| - 0.66 9.8 5.2 5.7 6.8 0.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2443) Methylase_S PF01420.14 gi|385803730|ref|YP_005840130.1| - 8e-32 110.5 0.9 1.3e-19 70.7 0.0 2.2 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain N6_Mtase PF02384.11 gi|385803731|ref|YP_005840131.1| - 6.2e-79 265.2 0.0 8.7e-79 264.8 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|385803731|ref|YP_005840131.1| - 7.7e-22 78.1 0.1 3.5e-21 76.0 0.1 2.2 1 0 0 1 1 1 1 HsdM N-terminal domain UPF0020 PF01170.13 gi|385803731|ref|YP_005840131.1| - 1.8e-09 37.4 0.0 3.1e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|385803731|ref|YP_005840131.1| - 2.4e-09 37.2 0.0 5.6e-09 36.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Phage_integrase PF00589.17 gi|385803732|ref|YP_005840132.1| - 1.6e-11 44.2 0.0 6.3e-09 35.7 0.0 2.9 1 1 1 2 2 2 2 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|385803732|ref|YP_005840132.1| - 2.5e-05 24.3 0.2 9.3e-05 22.5 0.1 2.0 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|385803732|ref|YP_005840132.1| - 0.0003 21.0 0.2 0.0012 19.1 0.1 2.0 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain HTH_40 PF14493.1 gi|385803732|ref|YP_005840132.1| - 0.081 13.1 0.2 3.1 8.0 0.2 2.8 2 1 0 2 2 2 0 Helix-turn-helix domain Phage_int_SAM_3 PF14659.1 gi|385803732|ref|YP_005840132.1| - 0.1 12.9 0.0 2.5 8.4 0.0 2.8 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain Asp_decarbox PF02261.11 gi|385803733|ref|YP_005840133.1| - 5.6e-41 138.7 0.0 6.2e-41 138.6 0.0 1.0 1 0 0 1 1 1 1 Aspartate decarboxylase SHOCT PF09851.4 gi|385803734|ref|YP_005840134.1| - 1.6e-08 33.7 1.3 1.6e-08 33.7 0.9 1.8 2 0 0 2 2 2 1 Short C-terminal domain GvpG PF05120.7 gi|385803734|ref|YP_005840134.1| - 0.0022 17.7 2.7 0.0023 17.7 1.0 1.6 1 1 1 2 2 2 1 Gas vesicle protein G DUF1707 PF08044.6 gi|385803734|ref|YP_005840134.1| - 0.0024 17.5 1.2 0.005 16.5 0.8 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF1707) DHDPS PF00701.17 gi|385803735|ref|YP_005840135.1| - 1.4e-62 210.9 0.0 1.6e-62 210.7 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ADH_N PF08240.7 gi|385803736|ref|YP_005840136.1| - 1.1e-29 102.4 2.9 2e-29 101.5 2.0 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|385803736|ref|YP_005840136.1| - 3.2e-20 71.9 0.2 4.7e-20 71.4 0.2 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|385803736|ref|YP_005840136.1| - 2.7e-05 25.0 0.1 4.9e-05 24.2 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glyoxalase_2 PF12681.2 gi|385803737|ref|YP_005840137.1| - 4.4e-13 49.7 0.0 5.4e-13 49.4 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|385803737|ref|YP_005840137.1| - 6e-12 45.6 0.0 7e-12 45.4 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|385803737|ref|YP_005840137.1| - 3e-09 36.8 0.0 3.8e-09 36.5 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|385803737|ref|YP_005840137.1| - 0.049 13.5 0.1 0.097 12.5 0.1 1.5 1 1 0 1 1 1 0 Glyoxalase-like domain TENA_THI-4 PF03070.11 gi|385803738|ref|YP_005840138.1| - 4.8e-48 163.6 0.1 5.4e-48 163.5 0.1 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family SSF PF00474.12 gi|385803739|ref|YP_005840139.1| - 2.4e-28 98.9 29.7 3.1e-28 98.5 20.6 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF1684 PF07920.6 gi|385803740|ref|YP_005840140.1| - 1.4e-52 177.3 0.0 1.7e-52 177.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) Usp PF00582.21 gi|385803741|ref|YP_005840141.1| - 8.6e-27 94.0 0.1 7.3e-26 91.0 0.1 1.9 1 1 0 1 1 1 1 Universal stress protein family SCO1-SenC PF02630.9 gi|385803742|ref|YP_005840142.1| - 5.4e-15 55.4 0.0 7.8e-15 54.9 0.0 1.1 1 0 0 1 1 1 1 SCO1/SenC Redoxin PF08534.5 gi|385803743|ref|YP_005840143.1| - 5e-09 35.8 0.0 6.2e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|385803743|ref|YP_005840143.1| - 5.5e-08 32.8 0.0 9.2e-08 32.1 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.16 gi|385803743|ref|YP_005840143.1| - 6.1e-08 32.3 0.0 8.1e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin PF00085.15 gi|385803743|ref|YP_005840143.1| - 3.9e-06 26.4 0.0 1.3e-05 24.7 0.0 1.8 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|385803743|ref|YP_005840143.1| - 0.00037 20.6 0.0 0.00052 20.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain Ant_C PF05586.6 gi|385803743|ref|YP_005840143.1| - 0.02 15.3 0.1 0.32 11.4 0.0 2.3 2 1 0 2 2 2 0 Anthrax receptor C-terminus region PC4 PF02229.11 gi|385803743|ref|YP_005840143.1| - 0.098 11.8 0.1 0.19 10.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional Coactivator p15 (PC4) DsbD PF02683.10 gi|385803744|ref|YP_005840144.1| - 1.8e-14 53.8 12.4 2.6e-14 53.3 8.6 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region ABC_membrane PF00664.18 gi|385803744|ref|YP_005840144.1| - 3.7 6.8 7.6 0.63 9.4 0.8 2.2 2 0 0 2 2 2 0 ABC transporter transmembrane region NTP_transf_3 PF12804.2 gi|385803745|ref|YP_005840145.1| - 6.7e-34 117.2 0.0 8.3e-34 116.9 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|385803745|ref|YP_005840145.1| - 0.00046 19.8 0.0 0.0011 18.6 0.0 1.6 1 1 0 1 1 1 1 Cytidylyltransferase IspD PF01128.14 gi|385803745|ref|YP_005840145.1| - 0.0027 17.2 0.1 0.0049 16.4 0.1 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.18 gi|385803745|ref|YP_005840145.1| - 0.0049 16.2 0.0 0.0088 15.3 0.0 1.6 1 1 0 1 1 1 1 Nucleotidyl transferase Glycos_transf_2 PF00535.21 gi|385803745|ref|YP_005840145.1| - 0.11 12.2 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 2 ALG3 PF05208.8 gi|385803746|ref|YP_005840146.1| - 0.064 12.4 0.7 0.064 12.4 0.5 1.0 1 0 0 1 1 1 0 ALG3 protein GDPD PF03009.12 gi|385803748|ref|YP_005840148.1| - 5.3e-28 98.2 0.4 1e-26 94.0 0.3 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family adh_short PF00106.20 gi|385803749|ref|YP_005840149.1| - 1.4e-27 96.6 0.2 2.2e-27 95.9 0.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|385803749|ref|YP_005840149.1| - 1.1e-11 44.9 0.0 1.5e-11 44.5 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|385803749|ref|YP_005840149.1| - 1.5e-09 37.7 0.1 8.4e-09 35.3 0.1 1.8 1 1 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|385803749|ref|YP_005840149.1| - 4.8e-09 36.4 0.6 6e-09 36.1 0.4 1.3 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|385803749|ref|YP_005840149.1| - 2.5e-07 30.3 0.0 3.2e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|385803749|ref|YP_005840149.1| - 0.0017 17.2 0.3 0.0022 16.9 0.2 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain THF_DHG_CYH_C PF02882.14 gi|385803749|ref|YP_005840149.1| - 0.077 12.0 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 3Beta_HSD PF01073.14 gi|385803749|ref|YP_005840149.1| - 0.16 10.6 0.1 0.22 10.1 0.0 1.1 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family RPE65 PF03055.10 gi|385803750|ref|YP_005840150.1| - 8.1e-109 364.3 0.0 9.1e-109 364.1 0.0 1.0 1 0 0 1 1 1 1 Retinal pigment epithelial membrane protein IMPDH PF00478.20 gi|385803751|ref|YP_005840151.1| - 1.3e-125 419.0 5.4 1.4e-125 418.8 3.8 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.23 gi|385803751|ref|YP_005840151.1| - 8.8e-24 83.0 4.0 7e-12 44.9 0.2 2.7 2 0 0 2 2 2 2 CBS domain NMO PF03060.10 gi|385803751|ref|YP_005840151.1| - 1.1e-10 41.1 5.2 5.3e-06 25.8 2.0 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|385803751|ref|YP_005840151.1| - 8.6e-09 34.6 4.9 1.4e-08 33.9 3.4 1.4 1 1 0 1 1 1 1 FMN-dependent dehydrogenase DHO_dh PF01180.16 gi|385803751|ref|YP_005840151.1| - 0.00032 19.7 3.1 0.00042 19.3 1.5 1.6 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase Glu_synthase PF01645.12 gi|385803751|ref|YP_005840151.1| - 0.00032 19.7 5.3 0.00057 18.9 3.7 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase ThiG PF05690.9 gi|385803751|ref|YP_005840151.1| - 0.00061 18.9 2.3 0.00061 18.9 1.6 2.2 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|385803751|ref|YP_005840151.1| - 0.0013 17.6 0.1 0.0029 16.4 0.1 1.6 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|385803751|ref|YP_005840151.1| - 0.0021 17.3 1.7 0.0044 16.3 0.7 1.8 2 1 0 2 2 2 1 Histidine biosynthesis protein HET-s_218-289 PF11558.3 gi|385803751|ref|YP_005840151.1| - 0.07 13.1 0.3 0.19 11.7 0.2 1.7 1 0 0 1 1 1 0 Het-s 218-289 PcrB PF01884.12 gi|385803751|ref|YP_005840151.1| - 4.4 6.4 8.1 0.13 11.4 0.4 2.2 3 0 0 3 3 3 0 PcrB family DZR PF12773.2 gi|385803754|ref|YP_005840154.1| - 0.029 14.1 0.3 0.046 13.5 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|385803754|ref|YP_005840154.1| - 0.055 13.1 1.2 0.11 12.1 0.8 1.5 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 UPF1_Zn_bind PF09416.5 gi|385803754|ref|YP_005840154.1| - 0.071 12.6 0.0 0.071 12.6 0.0 1.2 1 0 0 1 1 1 0 RNA helicase (UPF2 interacting domain) zf-RING_3 PF14369.1 gi|385803754|ref|YP_005840154.1| - 0.16 11.9 2.3 0.16 11.9 0.2 1.9 2 0 0 2 2 2 0 zinc-finger A2L_zn_ribbon PF08792.5 gi|385803754|ref|YP_005840154.1| - 0.35 10.3 2.3 3.7 7.1 0.2 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|385803754|ref|YP_005840154.1| - 0.68 9.9 3.4 8.7 6.3 0.2 2.2 2 0 0 2 2 2 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|385803755|ref|YP_005840155.1| - 0.037 13.7 1.2 0.061 13.0 0.8 1.5 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit RecR PF02132.10 gi|385803755|ref|YP_005840155.1| - 0.1 12.0 0.6 3.9 6.9 0.0 2.1 2 0 0 2 2 2 0 RecR protein RRN7 PF11781.3 gi|385803755|ref|YP_005840155.1| - 0.11 11.9 1.0 4.6 6.8 0.0 2.3 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-FPG_IleRS PF06827.9 gi|385803755|ref|YP_005840155.1| - 0.12 12.0 0.1 3.3 7.4 0.0 2.1 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-C2HC5 PF06221.8 gi|385803755|ref|YP_005840155.1| - 0.12 12.1 0.6 0.18 11.6 0.4 1.3 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type YhfH PF14149.1 gi|385803755|ref|YP_005840155.1| - 0.15 11.8 3.7 4.9 7.0 0.2 2.1 2 0 0 2 2 2 0 YhfH-like protein DUF3797 PF12677.2 gi|385803755|ref|YP_005840155.1| - 0.3 10.7 2.9 0.56 9.8 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Zn-ribbon_8 PF09723.5 gi|385803755|ref|YP_005840155.1| - 0.32 10.9 2.4 2 8.4 1.7 1.9 1 1 1 2 2 2 0 Zinc ribbon domain zf-IS66 PF13005.2 gi|385803755|ref|YP_005840155.1| - 0.37 10.8 1.9 1.3 9.0 0.1 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-dskA_traR PF01258.12 gi|385803755|ref|YP_005840155.1| - 1.4 8.7 4.4 7.1 6.4 0.2 2.1 1 1 1 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger 2_5_RNA_ligase2 PF13563.1 gi|385803757|ref|YP_005840157.1| - 2.4e-18 66.3 0.0 3e-18 65.9 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.11 gi|385803757|ref|YP_005840157.1| - 0.00014 21.7 0.0 0.19 11.7 0.0 2.4 2 1 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.4 gi|385803757|ref|YP_005840157.1| - 0.0024 17.5 0.0 0.0033 17.1 0.0 1.2 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain NusB PF01029.13 gi|385803757|ref|YP_005840157.1| - 0.12 12.3 0.1 0.21 11.5 0.0 1.4 1 1 0 1 1 1 0 NusB family Acyl-CoA_dh_1 PF00441.19 gi|385803758|ref|YP_005840158.1| - 1.2e-42 145.5 3.3 2.5e-42 144.5 0.9 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|385803758|ref|YP_005840158.1| - 6.5e-21 75.0 0.6 1.7e-20 73.6 0.4 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|385803758|ref|YP_005840158.1| - 7.3e-21 73.4 0.4 1.6e-20 72.3 0.3 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|385803758|ref|YP_005840158.1| - 5.2e-17 62.3 3.3 1.1e-16 61.2 2.3 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Mor PF08765.6 gi|385803758|ref|YP_005840158.1| - 0.069 12.9 0.3 5.5 6.8 0.0 2.7 2 1 0 2 2 2 0 Mor transcription activator family Polysacc_synt_C PF14667.1 gi|385803759|ref|YP_005840159.1| - 1e-05 25.3 16.2 1e-05 25.3 11.2 3.8 2 2 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain NUDIX PF00293.23 gi|385803760|ref|YP_005840160.1| - 1e-17 64.0 0.3 1.3e-17 63.6 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain PaaX PF07848.7 gi|385803761|ref|YP_005840161.1| - 0.049 13.6 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 PaaX-like protein PqqD PF05402.7 gi|385803762|ref|YP_005840162.1| - 0.013 15.5 0.1 0.035 14.1 0.1 1.8 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) ECH PF00378.15 gi|385803763|ref|YP_005840163.1| - 4.4e-65 219.2 0.1 4.9e-65 219.0 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family SDH_sah PF01972.11 gi|385803763|ref|YP_005840163.1| - 0.0018 17.1 0.0 0.0032 16.2 0.0 1.3 1 0 0 1 1 1 1 Serine dehydrogenase proteinase TFIIS_C PF01096.13 gi|385803764|ref|YP_005840164.1| - 4.3e-17 61.4 4.1 4.3e-17 61.4 2.8 3.2 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|385803764|ref|YP_005840164.1| - 5.4e-07 29.1 1.3 5.4e-07 29.1 0.9 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|385803764|ref|YP_005840164.1| - 1.4e-06 28.0 9.0 0.00034 20.3 0.4 2.5 2 1 0 2 2 2 2 Double zinc ribbon Prok-RING_1 PF14446.1 gi|385803764|ref|YP_005840164.1| - 3.2e-06 26.7 10.1 6e-05 22.6 1.5 3.1 3 0 0 3 3 3 1 Prokaryotic RING finger family 1 OrfB_Zn_ribbon PF07282.6 gi|385803764|ref|YP_005840164.1| - 6.4e-06 25.7 11.5 0.0017 17.9 0.7 2.4 1 1 0 2 2 2 2 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|385803764|ref|YP_005840164.1| - 0.00011 21.8 6.8 0.00023 20.8 0.4 2.6 2 1 0 2 2 2 1 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|385803764|ref|YP_005840164.1| - 0.00011 21.2 8.5 0.51 9.6 0.1 4.1 4 0 0 4 4 4 1 zinc-ribbon domain UPF0547 PF10571.4 gi|385803764|ref|YP_005840164.1| - 0.00015 21.3 6.5 0.61 9.8 0.0 4.0 4 0 0 4 4 4 1 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.7 gi|385803764|ref|YP_005840164.1| - 0.00022 20.9 10.4 0.2 11.4 0.1 4.1 4 0 0 4 4 4 1 PhnA Zinc-Ribbon zinc_ribbon_2 PF13240.1 gi|385803764|ref|YP_005840164.1| - 0.0006 19.2 7.7 2.3 7.8 0.1 4.1 4 0 0 4 4 4 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|385803764|ref|YP_005840164.1| - 0.0053 16.0 14.0 0.036 13.3 1.8 3.7 2 2 0 2 2 2 1 TFIIB zinc-binding Nudix_N_2 PF14803.1 gi|385803764|ref|YP_005840164.1| - 0.0066 16.1 10.5 1.1 9.0 0.1 3.8 3 1 0 3 3 3 1 Nudix N-terminal DUF2387 PF09526.5 gi|385803764|ref|YP_005840164.1| - 0.0079 16.0 9.7 0.016 15.1 1.1 2.3 2 0 0 2 2 2 1 Probable metal-binding protein (DUF2387) RRN7 PF11781.3 gi|385803764|ref|YP_005840164.1| - 0.0091 15.4 9.4 4.4 6.9 0.6 4.1 4 0 0 4 4 4 0 RNA polymerase I-specific transcription initiation factor Rrn7 Lar_restr_allev PF14354.1 gi|385803764|ref|YP_005840164.1| - 0.013 15.8 13.0 0.057 13.7 0.7 2.7 2 1 0 2 2 2 0 Restriction alleviation protein Lar PHF5 PF03660.9 gi|385803764|ref|YP_005840164.1| - 0.013 15.5 5.9 0.21 11.6 0.5 2.1 1 1 1 2 2 2 0 PHF5-like protein zf-C4pol PF14260.1 gi|385803764|ref|YP_005840164.1| - 0.014 15.4 4.5 0.38 10.7 0.1 2.3 1 1 1 2 2 2 0 C4-type zinc-finger of DNA polymerase delta PolC_DP2 PF03833.8 gi|385803764|ref|YP_005840164.1| - 0.014 13.0 8.4 0.22 9.1 1.1 2.0 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 DUF4428 PF14471.1 gi|385803764|ref|YP_005840164.1| - 0.023 14.4 0.5 0.023 14.4 0.3 2.6 3 0 0 3 3 2 0 Domain of unknown function (DUF4428) Zn-ribbon_8 PF09723.5 gi|385803764|ref|YP_005840164.1| - 0.025 14.5 10.4 3.1 7.8 0.0 3.9 3 1 0 3 3 3 0 Zinc ribbon domain zf-IS66 PF13005.2 gi|385803764|ref|YP_005840164.1| - 0.029 14.3 6.9 25 4.9 0.0 4.1 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 DUF164 PF02591.10 gi|385803764|ref|YP_005840164.1| - 0.039 13.7 7.0 12 5.8 0.0 3.9 3 1 1 4 4 4 0 Putative zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|385803764|ref|YP_005840164.1| - 0.041 13.4 7.6 0.52 9.9 0.1 3.7 4 0 0 4 4 4 0 zinc-ribbon domain GFA PF04828.9 gi|385803764|ref|YP_005840164.1| - 0.046 13.6 8.3 0.16 11.9 0.1 3.1 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme NinF PF05810.7 gi|385803764|ref|YP_005840164.1| - 0.047 13.4 7.4 0.14 11.9 1.0 3.0 2 1 1 3 3 3 0 NinF protein A2L_zn_ribbon PF08792.5 gi|385803764|ref|YP_005840164.1| - 0.052 13.0 14.2 0.28 10.6 0.1 4.1 3 1 0 4 4 4 0 A2L zinc ribbon domain zf-UBP PF02148.14 gi|385803764|ref|YP_005840164.1| - 0.076 13.1 5.5 0.084 12.9 0.8 2.3 1 1 1 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein DNA_RNApol_7kD PF03604.8 gi|385803764|ref|YP_005840164.1| - 0.086 12.3 14.3 1 8.9 0.1 4.0 3 1 1 4 4 4 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_4 PF13717.1 gi|385803764|ref|YP_005840164.1| - 0.088 12.5 9.4 0.53 10.0 0.2 3.6 4 0 0 4 4 3 0 zinc-ribbon domain HypA PF01155.14 gi|385803764|ref|YP_005840164.1| - 0.1 12.3 10.0 0.33 10.6 0.9 2.8 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family zf-RING_3 PF14369.1 gi|385803764|ref|YP_005840164.1| - 0.12 12.4 9.3 1 9.4 0.1 3.5 3 1 0 3 3 3 0 zinc-finger Tnp_zf-ribbon_2 PF13842.1 gi|385803764|ref|YP_005840164.1| - 0.12 12.8 5.3 40 4.7 0.6 3.2 3 0 0 3 3 3 0 DDE_Tnp_1-like zinc-ribbon zinc-ribbons_6 PF07191.7 gi|385803764|ref|YP_005840164.1| - 0.16 11.7 8.5 0.92 9.3 0.4 2.5 2 1 0 2 2 2 0 zinc-ribbons YhfH PF14149.1 gi|385803764|ref|YP_005840164.1| - 0.16 11.7 14.9 1.2 8.9 3.3 4.0 3 1 1 4 4 4 0 YhfH-like protein DUF3268 PF11672.3 gi|385803764|ref|YP_005840164.1| - 0.19 11.7 3.7 2.3 8.3 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3268) FYVE_2 PF02318.11 gi|385803764|ref|YP_005840164.1| - 0.19 11.5 0.3 0.19 11.5 0.2 2.3 2 1 0 2 2 2 0 FYVE-type zinc finger zf-ISL3 PF14690.1 gi|385803764|ref|YP_005840164.1| - 0.28 11.2 7.6 0.97 9.5 0.0 3.7 3 1 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 C1_1 PF00130.17 gi|385803764|ref|YP_005840164.1| - 0.55 10.0 9.8 0.27 10.9 2.0 2.4 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C4_Topoisom PF01396.14 gi|385803764|ref|YP_005840164.1| - 0.62 9.6 8.4 2 7.9 0.1 3.5 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger Mut7-C PF01927.11 gi|385803764|ref|YP_005840164.1| - 0.72 9.8 4.1 4.9 7.1 2.4 2.0 1 1 1 2 2 2 0 Mut7-C RNAse domain ADK_lid PF05191.9 gi|385803764|ref|YP_005840164.1| - 0.8 9.4 10.7 7 6.4 0.1 4.0 4 0 0 4 4 4 0 Adenylate kinase, active site lid Terminase_GpA PF05876.7 gi|385803764|ref|YP_005840164.1| - 0.84 7.9 6.8 0.084 11.2 1.4 1.6 1 1 0 2 2 2 0 Phage terminase large subunit (GpA) DUF2082 PF09855.4 gi|385803764|ref|YP_005840164.1| - 0.85 9.5 8.5 1.5 8.7 1.2 3.3 2 2 1 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Jiv90 PF14901.1 gi|385803764|ref|YP_005840164.1| - 1.1 9.2 8.1 6.9 6.7 0.6 2.4 2 1 0 2 2 2 0 Cleavage inducing molecular chaperone Herpes_UL49_1 PF03117.9 gi|385803764|ref|YP_005840164.1| - 1.4 7.9 5.7 11 4.9 0.1 3.0 1 1 2 3 3 3 0 UL49 family Rubredoxin PF00301.15 gi|385803764|ref|YP_005840164.1| - 1.4 8.8 9.0 8.5 6.3 0.6 3.7 3 1 0 3 3 3 0 Rubredoxin DUF3797 PF12677.2 gi|385803764|ref|YP_005840164.1| - 1.5 8.5 6.6 1.5 8.5 0.0 3.2 3 1 1 4 4 4 0 Domain of unknown function (DUF3797) zf-C2HC5 PF06221.8 gi|385803764|ref|YP_005840164.1| - 1.5 8.6 6.7 0.63 9.8 0.2 2.7 2 1 0 2 2 2 0 Putative zinc finger motif, C2HC5-type NOB1_Zn_bind PF08772.6 gi|385803764|ref|YP_005840164.1| - 1.5 8.6 11.6 5 7.0 1.6 3.2 2 2 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Ribosomal_L37ae PF01780.14 gi|385803764|ref|YP_005840164.1| - 1.6 8.6 7.3 2.6 7.9 0.6 2.7 1 1 0 2 2 2 0 Ribosomal L37ae protein family TerY-C PF15616.1 gi|385803764|ref|YP_005840164.1| - 1.8 8.5 8.5 0.29 11.0 0.6 2.1 1 1 1 2 2 2 0 TerY-C metal binding domain DUF2072 PF09845.4 gi|385803764|ref|YP_005840164.1| - 2.3 8.1 7.0 5.4 6.9 0.5 2.5 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) Cytochrom_CIII PF02085.11 gi|385803764|ref|YP_005840164.1| - 2.5 8.2 8.9 4.2 7.5 1.4 2.3 1 1 1 2 2 2 0 Class III cytochrome C family zf-trcl PF13451.1 gi|385803764|ref|YP_005840164.1| - 2.7 7.6 12.1 1.5 8.4 0.2 3.9 4 0 0 4 4 4 0 Probable zinc-binding domain FdhE PF04216.7 gi|385803764|ref|YP_005840164.1| - 3.2 7.3 7.5 0.25 11.0 0.7 1.9 1 1 0 2 2 2 0 Protein involved in formate dehydrogenase formation Cys_rich_KTR PF14205.1 gi|385803764|ref|YP_005840164.1| - 3.6 7.1 7.2 1.5 8.3 0.1 2.9 4 0 0 4 4 3 0 Cysteine-rich KTR Methyltransf_13 PF08421.6 gi|385803764|ref|YP_005840164.1| - 3.7 7.1 6.6 16 5.0 0.0 3.5 3 1 1 4 4 4 0 Putative zinc binding domain zf-UBR PF02207.15 gi|385803764|ref|YP_005840164.1| - 3.8 7.3 11.1 2.2 8.0 0.4 3.0 2 1 1 3 3 3 0 Putative zinc finger in N-recognin (UBR box) zf-NADH-PPase PF09297.6 gi|385803764|ref|YP_005840164.1| - 4 7.0 9.9 13 5.4 1.0 3.8 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain NCD3G PF07562.9 gi|385803764|ref|YP_005840164.1| - 4.1 7.1 10.5 0.62 9.8 0.4 2.9 2 2 0 2 2 2 0 Nine Cysteines Domain of family 3 GPCR zf-RING_5 PF14634.1 gi|385803764|ref|YP_005840164.1| - 4.4 7.1 11.8 7.7 6.3 1.7 3.3 1 1 1 2 2 2 0 zinc-RING finger domain IBR PF01485.16 gi|385803764|ref|YP_005840164.1| - 4.6 7.1 13.3 5.3e+03 -2.7 9.3 3.2 1 1 0 1 1 0 0 IBR domain DUF2296 PF10058.4 gi|385803764|ref|YP_005840164.1| - 5.2 6.8 9.6 7.4 6.3 1.7 3.1 2 2 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-B_box PF00643.19 gi|385803764|ref|YP_005840164.1| - 6.5 6.7 11.7 45 4.0 2.1 3.8 3 1 0 3 3 3 0 B-box zinc finger Baculo_LEF5_C PF11792.3 gi|385803764|ref|YP_005840164.1| - 7 6.1 10.7 0.43 10.0 1.2 3.1 3 1 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain DUF2066 PF09839.4 gi|385803765|ref|YP_005840165.1| - 0.062 12.4 0.2 0.087 11.9 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2066) Methyltransf_18 PF12847.2 gi|385803766|ref|YP_005840166.1| - 1.2e-14 54.8 0.0 1.7e-14 54.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|385803766|ref|YP_005840166.1| - 3.2e-14 52.9 1.2 2.1e-13 50.3 0.8 2.0 1 1 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|385803766|ref|YP_005840166.1| - 2e-11 43.8 0.0 1.1e-09 38.1 0.0 2.0 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.1 gi|385803766|ref|YP_005840166.1| - 5.1e-09 35.8 0.0 7.1e-09 35.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|385803766|ref|YP_005840166.1| - 1.2e-08 34.8 0.0 3.5e-08 33.3 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|385803766|ref|YP_005840166.1| - 3.3e-08 33.0 0.0 4.9e-08 32.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|385803766|ref|YP_005840166.1| - 7e-08 31.9 0.1 9.6e-08 31.4 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.14 gi|385803766|ref|YP_005840166.1| - 2.3e-07 30.5 0.1 3.1e-07 30.1 0.1 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|385803766|ref|YP_005840166.1| - 4.3e-06 25.9 0.0 1.3e-05 24.4 0.0 1.6 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|385803766|ref|YP_005840166.1| - 2.3e-05 24.7 0.0 4.9e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|385803766|ref|YP_005840166.1| - 3.4e-05 24.2 0.0 5.5e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|385803766|ref|YP_005840166.1| - 0.0002 20.4 0.0 0.00026 20.1 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase CMAS PF02353.15 gi|385803766|ref|YP_005840166.1| - 0.0006 18.9 0.0 0.00074 18.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase UPF0020 PF01170.13 gi|385803766|ref|YP_005840166.1| - 0.0023 17.5 0.0 0.0029 17.1 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Met_10 PF02475.11 gi|385803766|ref|YP_005840166.1| - 0.011 15.3 0.0 0.015 14.9 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Cons_hypoth95 PF03602.10 gi|385803766|ref|YP_005840166.1| - 0.011 15.0 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_25 PF13649.1 gi|385803766|ref|YP_005840166.1| - 0.021 15.1 0.0 0.031 14.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain TehB PF03848.9 gi|385803766|ref|YP_005840166.1| - 0.074 12.2 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_15 PF09445.5 gi|385803766|ref|YP_005840166.1| - 0.11 12.0 0.0 0.15 11.6 0.0 1.1 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase FmrO PF07091.6 gi|385803766|ref|YP_005840166.1| - 0.17 10.8 0.0 0.26 10.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) NAC PF01849.13 gi|385803767|ref|YP_005840167.1| - 9.2e-18 63.5 0.7 1.3e-17 63.0 0.5 1.3 1 0 0 1 1 1 1 NAC domain UBA PF00627.26 gi|385803767|ref|YP_005840167.1| - 0.00018 21.2 0.2 0.00018 21.2 0.1 2.2 2 0 0 2 2 2 1 UBA/TS-N domain UBA_4 PF14555.1 gi|385803767|ref|YP_005840167.1| - 0.004 16.6 0.5 0.0083 15.6 0.3 1.5 1 0 0 1 1 1 1 UBA-like domain DUF3867 PF12983.2 gi|385803767|ref|YP_005840167.1| - 0.015 15.2 0.1 0.023 14.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3867) LptC PF06835.8 gi|385803767|ref|YP_005840167.1| - 0.082 12.3 0.2 0.12 11.7 0.1 1.4 1 1 0 1 1 1 0 Lipopolysaccharide-assembly, LptC-related MM_CoA_mutase PF01642.17 gi|385803768|ref|YP_005840168.1| - 3.3e-204 678.8 2.9 3.8e-204 678.6 2.0 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Glyoxalase_4 PF13669.1 gi|385803769|ref|YP_005840169.1| - 6.4e-16 58.3 0.3 7.4e-16 58.1 0.2 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|385803769|ref|YP_005840169.1| - 1.4e-07 31.5 0.2 1.5e-07 31.4 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.2 gi|385803769|ref|YP_005840169.1| - 7.7e-05 23.2 0.1 0.00013 22.5 0.0 1.5 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|385803769|ref|YP_005840169.1| - 0.00027 20.8 0.1 0.00054 19.9 0.1 1.6 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMP-binding PF00501.23 gi|385803770|ref|YP_005840170.1| - 1.3e-79 267.5 1.0 1.6e-79 267.2 0.7 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|385803770|ref|YP_005840170.1| - 8.7e-18 65.0 1.6 2e-17 63.9 0.2 2.3 2 1 0 2 2 2 1 AMP-binding enzyme C-terminal domain Metallophos_2 PF12850.2 gi|385803771|ref|YP_005840171.1| - 8.7e-09 35.3 1.8 1.8e-08 34.3 1.2 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|385803771|ref|YP_005840171.1| - 0.00021 20.7 1.6 0.0012 18.3 0.0 2.2 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|385803773|ref|YP_005840173.1| - 0.0024 17.6 6.4 0.24 11.2 0.2 3.7 3 1 0 3 3 3 3 OB-fold nucleic acid binding domain UPF0118 PF01594.11 gi|385803774|ref|YP_005840174.1| - 2.2e-36 125.5 33.0 2.8e-36 125.1 22.9 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF20 Prominin PF05478.6 gi|385803774|ref|YP_005840174.1| - 0.071 10.6 0.2 0.11 10.0 0.2 1.3 1 0 0 1 1 1 0 Prominin DUF2830 PF11125.3 gi|385803774|ref|YP_005840174.1| - 1.9 8.2 8.8 24 4.7 0.0 4.2 4 0 0 4 4 4 0 Protein of unknown function (DUF2830) PadR PF03551.9 gi|385803775|ref|YP_005840175.1| - 6.1e-16 57.9 1.4 7.4e-16 57.6 1.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|385803775|ref|YP_005840175.1| - 0.0011 19.2 0.0 0.0014 18.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|385803775|ref|YP_005840175.1| - 0.0087 15.8 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.6 gi|385803775|ref|YP_005840175.1| - 0.021 14.4 0.0 0.032 13.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HypA PF01155.14 gi|385803776|ref|YP_005840176.1| - 0.0077 15.9 0.8 0.018 14.6 0.6 1.6 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|385803776|ref|YP_005840176.1| - 0.011 15.5 0.7 0.023 14.5 0.5 1.5 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|385803776|ref|YP_005840176.1| - 0.017 14.8 2.0 4 7.3 0.2 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain UPF0547 PF10571.4 gi|385803776|ref|YP_005840176.1| - 0.018 14.6 3.9 0.082 12.6 0.4 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 FdhE PF04216.7 gi|385803776|ref|YP_005840176.1| - 0.02 14.6 0.9 0.1 12.2 0.3 2.0 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation zf-ribbon_3 PF13248.1 gi|385803776|ref|YP_005840176.1| - 0.027 13.6 2.5 0.41 9.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|385803776|ref|YP_005840176.1| - 0.027 13.7 0.4 0.055 12.8 0.3 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding NinG PF05766.7 gi|385803776|ref|YP_005840176.1| - 0.07 12.8 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage Lambda NinG protein zinc_ribbon_5 PF13719.1 gi|385803776|ref|YP_005840176.1| - 0.079 12.5 2.1 1.5 8.4 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|385803776|ref|YP_005840176.1| - 0.091 12.7 2.1 0.29 11.1 1.5 1.8 1 1 0 1 1 1 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|385803776|ref|YP_005840176.1| - 0.094 12.1 0.3 0.19 11.1 0.2 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_4 PF13717.1 gi|385803776|ref|YP_005840176.1| - 0.15 11.8 2.5 2.2 8.0 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|385803776|ref|YP_005840176.1| - 0.27 10.9 1.8 0.53 9.9 1.3 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|385803776|ref|YP_005840176.1| - 0.28 10.7 2.5 4.1 7.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|385803776|ref|YP_005840176.1| - 0.44 10.3 7.0 1.7 8.4 2.8 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-tcix PF14952.1 gi|385803776|ref|YP_005840176.1| - 0.54 9.6 2.9 3.2 7.1 0.1 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-IS66 PF13005.2 gi|385803776|ref|YP_005840176.1| - 9.6 6.2 7.9 11 6.0 0.2 3.3 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 DoxX PF07681.7 gi|385803777|ref|YP_005840177.1| - 2.2e-08 34.3 20.3 1.2e-07 32.0 3.4 3.3 2 1 0 2 2 2 2 DoxX DoxD PF04173.8 gi|385803777|ref|YP_005840177.1| - 0.66 9.6 12.3 15 5.2 0.8 3.7 2 1 1 3 3 3 0 TQO small subunit DoxD DDE_5 PF13546.1 gi|385803778|ref|YP_005840178.1| - 5.5e-20 71.3 0.0 8.7e-20 70.6 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.16 gi|385803778|ref|YP_005840178.1| - 2.8e-17 62.9 0.4 5.2e-17 62.0 0.1 1.6 2 1 0 2 2 2 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|385803778|ref|YP_005840178.1| - 0.00011 21.3 0.5 0.00045 19.3 0.3 1.8 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_6 PF13751.1 gi|385803778|ref|YP_005840178.1| - 0.01 15.8 0.0 0.035 14.1 0.0 1.9 2 0 0 2 2 2 0 Transposase DDE domain Hydrolase_3 PF08282.7 gi|385803780|ref|YP_005840180.1| - 3.2e-11 43.3 0.0 0.00014 21.5 0.0 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|385803780|ref|YP_005840180.1| - 0.0012 19.0 1.1 0.028 14.5 0.0 2.5 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase CutC PF03932.9 gi|385803780|ref|YP_005840180.1| - 0.023 13.9 0.1 0.04 13.1 0.1 1.4 1 0 0 1 1 1 0 CutC family MR_MLE_C PF13378.1 gi|385803781|ref|YP_005840181.1| - 7.9e-30 103.0 0.2 2.5e-29 101.4 0.0 1.9 3 0 0 3 3 3 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|385803781|ref|YP_005840181.1| - 2.3e-15 56.6 0.1 4.9e-15 55.5 0.1 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|385803781|ref|YP_005840181.1| - 4.8e-12 46.2 2.3 1.1e-10 41.8 0.1 3.6 4 0 0 4 4 4 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SBP_bac_11 PF13531.1 gi|385803781|ref|YP_005840181.1| - 0.0092 15.6 0.2 0.02 14.5 0.1 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Rubrerythrin PF02915.12 gi|385803782|ref|YP_005840182.1| - 0.00075 19.8 1.3 0.0016 18.7 0.9 1.6 1 0 0 1 1 1 1 Rubrerythrin Fer2 PF00111.22 gi|385803783|ref|YP_005840183.1| - 2.2e-12 46.5 2.0 2.8e-12 46.2 1.4 1.1 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|385803783|ref|YP_005840183.1| - 0.028 14.2 0.1 0.031 14.0 0.1 1.3 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|385803783|ref|YP_005840183.1| - 0.078 12.8 0.6 0.41 10.4 0.4 2.2 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain DHODB_Fe-S_bind PF10418.4 gi|385803783|ref|YP_005840183.1| - 0.12 11.8 1.3 0.2 11.1 0.2 1.9 3 0 0 3 3 3 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B DUF3054 PF11255.3 gi|385803784|ref|YP_005840184.1| - 2.2e-26 91.8 10.2 2.6e-26 91.6 7.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) Methyltransf_11 PF08241.7 gi|385803785|ref|YP_005840185.1| - 5e-18 65.3 0.0 7.4e-18 64.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|385803785|ref|YP_005840185.1| - 4.9e-14 52.3 0.0 6.1e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|385803785|ref|YP_005840185.1| - 5.6e-10 39.5 0.0 1.1e-09 38.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385803785|ref|YP_005840185.1| - 1.3e-08 34.6 0.0 2.1e-08 33.8 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|385803785|ref|YP_005840185.1| - 2.7e-07 29.9 0.0 4.9e-07 29.1 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|385803785|ref|YP_005840185.1| - 1.3e-06 28.7 0.0 1.9e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385803785|ref|YP_005840185.1| - 1.4e-06 28.8 0.1 3.1e-06 27.7 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|385803785|ref|YP_005840185.1| - 0.00035 20.2 0.0 0.00045 19.9 0.0 1.1 1 0 0 1 1 1 1 Hypothetical methyltransferase MetW PF07021.7 gi|385803785|ref|YP_005840185.1| - 0.0023 17.3 0.0 0.0036 16.7 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_2 PF00891.13 gi|385803785|ref|YP_005840185.1| - 0.12 11.5 0.4 0.15 11.2 0.3 1.1 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_26 PF13659.1 gi|385803785|ref|YP_005840185.1| - 0.14 12.2 0.8 0.39 10.7 0.6 1.7 1 1 0 1 1 1 0 Methyltransferase domain Acetyltransf_1 PF00583.19 gi|385803786|ref|YP_005840186.1| - 0.0013 18.7 0.0 0.0022 18.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|385803786|ref|YP_005840186.1| - 0.0055 16.4 0.0 0.011 15.4 0.0 1.5 1 1 0 1 1 1 1 FR47-like protein YpzI PF14140.1 gi|385803786|ref|YP_005840186.1| - 0.05 13.1 0.1 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 YpzI-like protein Acetyltransf_CG PF14542.1 gi|385803786|ref|YP_005840186.1| - 0.094 12.6 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase XPG_I PF00867.13 gi|385803787|ref|YP_005840187.1| - 2e-25 88.6 0.0 3.6e-25 87.8 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|385803787|ref|YP_005840187.1| - 4.5e-12 46.1 0.0 8.2e-12 45.2 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|385803787|ref|YP_005840187.1| - 0.0021 18.2 0.0 0.0041 17.3 0.0 1.5 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold DUF3179 PF11376.3 gi|385803789|ref|YP_005840189.1| - 9.8e-99 329.8 0.1 1.2e-98 329.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3179) Flocculin_t3 PF13928.1 gi|385803789|ref|YP_005840189.1| - 0.24 11.5 0.2 0.24 11.5 0.2 2.6 3 0 0 3 3 3 0 Flocculin type 3 repeat MerT PF02411.10 gi|385803790|ref|YP_005840190.1| - 0.62 9.8 10.6 0.1 12.4 4.2 2.0 2 1 0 2 2 2 0 MerT mercuric transport protein zinc_ribbon_5 PF13719.1 gi|385803791|ref|YP_005840191.1| - 0.00048 19.6 0.6 0.069 12.7 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|385803791|ref|YP_005840191.1| - 0.0007 19.2 0.6 0.076 12.7 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|385803791|ref|YP_005840191.1| - 0.0018 18.1 2.4 0.75 9.8 0.7 2.1 2 0 0 2 2 2 2 Zinc ribbon domain CpXC PF14353.1 gi|385803791|ref|YP_005840191.1| - 0.0026 17.7 1.2 0.004 17.1 0.8 1.4 1 1 0 1 1 1 1 CpXC protein zf-ribbon_3 PF13248.1 gi|385803791|ref|YP_005840191.1| - 0.0065 15.6 0.4 1.3 8.3 0.0 2.3 2 0 0 2 2 2 1 zinc-ribbon domain DUF4379 PF14311.1 gi|385803791|ref|YP_005840191.1| - 0.0082 15.9 0.4 0.0082 15.9 0.3 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4379) HypA PF01155.14 gi|385803791|ref|YP_005840191.1| - 0.011 15.4 0.3 0.014 15.0 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-PHD-like PF15446.1 gi|385803791|ref|YP_005840191.1| - 0.012 14.8 0.6 0.013 14.7 0.4 1.0 1 0 0 1 1 1 0 PHD/FYVE-zinc-finger like domain TF_Zn_Ribbon PF08271.7 gi|385803791|ref|YP_005840191.1| - 0.013 14.7 3.3 0.2 11.0 0.0 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding zf-C2H2 PF00096.21 gi|385803791|ref|YP_005840191.1| - 0.014 15.6 1.5 2.5 8.6 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-Sec23_Sec24 PF04810.10 gi|385803791|ref|YP_005840191.1| - 0.026 14.0 1.0 4.3 6.9 0.1 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger DUF2296 PF10058.4 gi|385803791|ref|YP_005840191.1| - 0.03 14.0 0.3 0.9 9.3 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) OrfB_Zn_ribbon PF07282.6 gi|385803791|ref|YP_005840191.1| - 0.032 13.8 0.5 1.7 8.3 0.0 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DUF35_N PF12172.3 gi|385803791|ref|YP_005840191.1| - 0.037 13.9 1.0 1.5 8.7 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Terminase_GpA PF05876.7 gi|385803791|ref|YP_005840191.1| - 0.044 12.1 0.3 0.046 12.0 0.2 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) UPF0547 PF10571.4 gi|385803791|ref|YP_005840191.1| - 0.05 13.2 1.9 1.7 8.4 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.7 gi|385803791|ref|YP_005840191.1| - 0.051 13.3 0.0 0.14 11.9 0.0 1.7 1 1 0 1 1 1 0 PhnA Zinc-Ribbon SprT-like PF10263.4 gi|385803791|ref|YP_005840191.1| - 0.06 13.0 0.3 0.085 12.5 0.2 1.3 1 1 0 1 1 1 0 SprT-like family Mut7-C PF01927.11 gi|385803791|ref|YP_005840191.1| - 0.06 13.3 0.7 0.09 12.7 0.5 1.3 1 0 0 1 1 1 0 Mut7-C RNAse domain A2L_zn_ribbon PF08792.5 gi|385803791|ref|YP_005840191.1| - 0.075 12.5 2.7 6.8 6.2 0.2 2.6 3 0 0 3 3 3 0 A2L zinc ribbon domain Rubredoxin PF00301.15 gi|385803791|ref|YP_005840191.1| - 0.079 12.8 6.2 4.6 7.2 4.3 2.3 1 1 0 1 1 1 0 Rubredoxin zf-tcix PF14952.1 gi|385803791|ref|YP_005840191.1| - 0.097 12.0 2.0 2.3 7.6 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding GFA PF04828.9 gi|385803791|ref|YP_005840191.1| - 0.099 12.5 1.1 0.41 10.6 0.7 1.8 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme zf-TFIIB PF13453.1 gi|385803791|ref|YP_005840191.1| - 0.12 11.5 1.2 0.35 10.0 0.8 1.8 1 1 0 1 1 1 0 Transcription factor zinc-finger Prok-RING_1 PF14446.1 gi|385803791|ref|YP_005840191.1| - 0.12 12.1 1.0 13 5.6 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DNA_RNApol_7kD PF03604.8 gi|385803791|ref|YP_005840191.1| - 0.15 11.5 3.3 5.9 6.4 0.3 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.2 gi|385803791|ref|YP_005840191.1| - 0.16 11.7 2.0 0.43 10.4 1.4 1.7 1 1 0 1 1 1 0 Double zinc ribbon DUF2225 PF09986.4 gi|385803791|ref|YP_005840191.1| - 0.17 11.3 0.4 0.19 11.1 0.3 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) Lar_restr_allev PF14354.1 gi|385803791|ref|YP_005840191.1| - 0.17 12.1 2.4 5.5 7.3 1.8 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar DUF164 PF02591.10 gi|385803791|ref|YP_005840191.1| - 0.18 11.6 1.6 1.5 8.7 0.0 2.2 2 0 0 2 2 2 0 Putative zinc ribbon domain Ribosomal_S27e PF01667.12 gi|385803791|ref|YP_005840191.1| - 0.24 10.9 1.0 15 5.2 0.1 2.1 2 0 0 2 2 2 0 Ribosomal protein S27 zf-ISL3 PF14690.1 gi|385803791|ref|YP_005840191.1| - 0.3 11.1 2.2 2.2 8.3 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-LITAF-like PF10601.4 gi|385803791|ref|YP_005840191.1| - 0.3 10.9 1.4 0.99 9.3 0.0 2.0 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain PHD PF00628.24 gi|385803791|ref|YP_005840191.1| - 0.34 10.6 3.9 3.2 7.5 2.7 2.0 1 1 0 1 1 1 0 PHD-finger Elf1 PF05129.8 gi|385803791|ref|YP_005840191.1| - 0.39 10.4 2.1 2.9 7.6 0.3 2.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like DNA_ligase_ZBD PF03119.11 gi|385803791|ref|YP_005840191.1| - 0.43 10.3 0.1 0.43 10.3 0.1 2.3 3 0 0 3 3 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn_ribbon_recom PF13408.1 gi|385803791|ref|YP_005840191.1| - 0.56 10.5 2.2 11 6.4 0.1 2.4 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zf-IS66 PF13005.2 gi|385803791|ref|YP_005840191.1| - 2.4 8.1 4.7 15 5.6 0.4 2.0 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 SBP_bac_8 PF13416.1 gi|385803792|ref|YP_005840192.1| - 1.7e-24 87.0 6.8 2.4e-24 86.5 4.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|385803792|ref|YP_005840192.1| - 0.0057 16.3 0.7 0.06 12.9 0.5 2.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|385803792|ref|YP_005840192.1| - 0.068 12.4 0.1 0.16 11.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|385803792|ref|YP_005840192.1| - 0.23 11.5 2.8 0.68 10.0 2.0 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|385803793|ref|YP_005840193.1| - 1.5e-17 63.7 17.0 1.5e-17 63.7 11.8 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4064 PF13273.1 gi|385803793|ref|YP_005840193.1| - 0.57 10.3 5.7 0.77 9.9 1.3 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF4064) BPD_transp_1 PF00528.17 gi|385803794|ref|YP_005840194.1| - 2.7e-13 49.8 20.3 2.7e-13 49.8 14.0 2.0 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|385803795|ref|YP_005840195.1| - 1.4e-32 112.8 0.0 3.1e-32 111.7 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|385803795|ref|YP_005840195.1| - 6.7e-09 36.1 0.0 0.00067 19.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|385803795|ref|YP_005840195.1| - 2.9e-06 27.1 0.1 1.4e-05 25.0 0.0 2.2 2 0 0 2 2 2 1 TOBE domain DUF258 PF03193.11 gi|385803795|ref|YP_005840195.1| - 0.00036 19.7 0.0 0.00065 18.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|385803795|ref|YP_005840195.1| - 0.00058 19.1 0.2 0.0028 16.9 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|385803795|ref|YP_005840195.1| - 0.0019 18.1 0.6 0.0044 16.9 0.4 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|385803795|ref|YP_005840195.1| - 0.0022 18.1 0.0 0.007 16.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|385803795|ref|YP_005840195.1| - 0.0039 15.9 0.2 0.0075 15.0 0.1 1.4 1 1 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_15 PF13175.1 gi|385803795|ref|YP_005840195.1| - 0.0044 16.1 0.0 0.35 9.8 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|385803795|ref|YP_005840195.1| - 0.0059 16.1 0.0 0.013 15.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|385803795|ref|YP_005840195.1| - 0.008 16.1 0.0 0.018 15.0 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain TOBE PF03459.12 gi|385803795|ref|YP_005840195.1| - 0.013 15.5 0.0 0.15 12.1 0.0 2.5 2 0 0 2 2 2 0 TOBE domain AAA PF00004.24 gi|385803795|ref|YP_005840195.1| - 0.021 15.0 0.3 0.087 13.0 0.0 2.2 3 0 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|385803795|ref|YP_005840195.1| - 0.022 14.2 0.1 0.04 13.3 0.1 1.5 1 1 0 1 1 1 0 AAA-like domain AAA_25 PF13481.1 gi|385803795|ref|YP_005840195.1| - 0.023 14.0 0.6 0.13 11.6 0.4 2.0 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|385803795|ref|YP_005840195.1| - 0.029 14.2 0.0 0.077 12.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|385803795|ref|YP_005840195.1| - 0.042 14.6 0.0 0.084 13.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|385803795|ref|YP_005840195.1| - 0.065 12.3 0.0 0.14 11.2 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|385803795|ref|YP_005840195.1| - 0.18 11.5 2.1 0.36 10.5 0.1 2.5 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) PAS_9 PF13426.1 gi|385803796|ref|YP_005840196.1| - 2.8e-74 246.1 10.0 6.9e-14 52.0 0.0 7.6 7 0 0 7 7 7 7 PAS domain PAS_4 PF08448.5 gi|385803796|ref|YP_005840196.1| - 1.2e-61 205.5 8.0 2.2e-10 40.5 0.1 7.6 8 0 0 8 8 7 6 PAS fold PAS PF00989.19 gi|385803796|ref|YP_005840196.1| - 4.2e-44 148.9 14.8 4.4e-11 42.5 0.3 8.7 8 1 2 10 10 10 5 PAS fold PAS_3 PF08447.6 gi|385803796|ref|YP_005840196.1| - 6.4e-30 103.1 1.6 6.9e-10 38.8 0.0 7.4 7 0 0 7 7 7 4 PAS fold PAS_8 PF13188.1 gi|385803796|ref|YP_005840196.1| - 2.2e-27 93.9 3.4 5.3e-07 29.2 0.0 7.2 7 0 0 7 7 7 5 PAS domain PAS_11 PF14598.1 gi|385803796|ref|YP_005840196.1| - 6.9e-13 48.5 1.4 1.9e-05 24.5 0.0 5.9 6 0 0 6 6 6 3 PAS domain PAS_10 PF13596.1 gi|385803796|ref|YP_005840196.1| - 8.7e-11 42.0 0.5 0.024 14.9 0.0 6.0 6 0 0 6 6 6 2 PAS domain GAF_3 PF13492.1 gi|385803796|ref|YP_005840196.1| - 2.3e-05 24.4 0.0 9.9e-05 22.4 0.0 2.2 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|385803796|ref|YP_005840196.1| - 0.00033 21.1 0.2 0.0021 18.5 0.0 2.6 2 0 0 2 2 1 1 GAF domain PAS_7 PF12860.2 gi|385803796|ref|YP_005840196.1| - 0.0012 18.8 13.2 0.59 10.1 0.0 7.2 6 3 2 8 8 8 1 PAS fold IQ-like PF15157.1 gi|385803796|ref|YP_005840196.1| - 0.0023 18.0 1.3 0.25 11.5 0.1 3.0 3 0 0 3 3 2 1 IQ-like HATPase_c PF02518.21 gi|385803796|ref|YP_005840196.1| - 0.0025 17.5 0.0 0.0083 15.8 0.0 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|385803796|ref|YP_005840196.1| - 0.0064 16.4 0.2 0.0064 16.4 0.2 3.4 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain DUF2984 PF11203.3 gi|385803796|ref|YP_005840196.1| - 1 9.4 6.1 0.34 11.0 0.1 3.3 4 0 0 4 4 3 0 Protein of unknown function (DUF2984) DUF615 PF04751.9 gi|385803796|ref|YP_005840196.1| - 3.1 7.4 13.0 0.047 13.3 2.9 2.6 3 1 0 3 3 3 0 Protein of unknown function (DUF615) Response_reg PF00072.19 gi|385803797|ref|YP_005840197.1| - 1.8e-14 53.6 0.3 2.8e-14 53.0 0.2 1.3 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.5 gi|385803797|ref|YP_005840197.1| - 3.1e-13 49.4 5.4 3.1e-13 49.4 3.8 1.7 2 0 0 2 2 2 1 HalX domain DUF695 PF05117.7 gi|385803797|ref|YP_005840197.1| - 0.039 13.8 0.9 0.38 10.6 0.2 2.2 1 1 1 2 2 2 0 Family of unknown function (DUF695) Cytadhesin_P30 PF07271.6 gi|385803797|ref|YP_005840197.1| - 0.61 9.3 2.6 0.9 8.7 1.8 1.2 1 0 0 1 1 1 0 Cytadhesin P30/P32 Peptidase_S24 PF00717.18 gi|385803799|ref|YP_005840199.1| - 6.9e-06 25.6 0.2 2e-05 24.1 0.0 1.8 2 0 0 2 2 2 1 Peptidase S24-like PKD PF00801.15 gi|385803801|ref|YP_005840201.1| - 2e-15 56.2 9.4 1.7e-07 30.8 0.0 3.6 3 0 0 3 3 3 2 PKD domain Y_Y_Y PF07495.8 gi|385803801|ref|YP_005840201.1| - 0.44 10.3 2.5 31 4.4 0.1 3.1 3 0 0 3 3 3 0 Y_Y_Y domain DUF1034 PF06280.7 gi|385803802|ref|YP_005840202.1| - 0.074 13.4 5.5 0.051 13.9 2.5 1.8 2 0 0 2 2 2 0 Fn3-like domain (DUF1034) ABC2_membrane_3 PF12698.2 gi|385803803|ref|YP_005840203.1| - 0.012 14.7 6.0 0.015 14.3 4.1 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein CotE PF10628.4 gi|385803803|ref|YP_005840203.1| - 0.028 13.8 7.2 0.051 12.9 0.0 2.1 2 0 0 2 2 2 0 Outer spore coat protein E (CotE) CarboxypepD_reg PF13620.1 gi|385803803|ref|YP_005840203.1| - 7.3 6.7 7.9 2 8.5 0.3 3.2 4 0 0 4 4 4 0 Carboxypeptidase regulatory-like domain Daxx PF03344.10 gi|385803804|ref|YP_005840204.1| - 0.0043 15.6 7.9 0.0066 15.0 5.5 1.4 1 0 0 1 1 1 1 Daxx Family Nop14 PF04147.7 gi|385803804|ref|YP_005840204.1| - 0.19 9.6 14.3 0.28 9.0 9.9 1.2 1 0 0 1 1 1 0 Nop14-like family CDC45 PF02724.9 gi|385803804|ref|YP_005840204.1| - 0.4 8.6 9.7 0.58 8.1 6.7 1.1 1 0 0 1 1 1 0 CDC45-like protein DUF2457 PF10446.4 gi|385803804|ref|YP_005840204.1| - 6.4 5.3 26.1 13 4.4 18.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) Spore_YpjB PF09577.5 gi|385803806|ref|YP_005840206.1| - 0.036 13.6 0.1 0.092 12.2 0.0 1.5 1 1 0 1 1 1 0 Sporulation protein YpjB (SpoYpjB) CRISPR_Cse2 PF09485.5 gi|385803806|ref|YP_005840206.1| - 0.068 13.2 0.1 0.12 12.4 0.1 1.4 1 0 0 1 1 1 0 CRISPR-associated protein Cse2 (CRISPR_cse2) Mrr_N PF14338.1 gi|385803806|ref|YP_005840206.1| - 0.13 12.3 0.4 0.26 11.3 0.1 1.6 2 0 0 2 2 2 0 Mrr N-terminal domain Bacillus_HBL PF05791.6 gi|385803808|ref|YP_005840208.1| - 0.027 13.8 16.9 0.026 13.9 3.3 2.4 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Prok-RING_4 PF14447.1 gi|385803808|ref|YP_005840208.1| - 0.098 12.2 1.1 0.23 11.0 0.8 1.6 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 PyrI_C PF02748.10 gi|385803808|ref|YP_005840208.1| - 0.2 11.0 1.2 2.2 7.7 0.2 2.5 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Tox-ODYAM1 PF15642.1 gi|385803808|ref|YP_005840208.1| - 1.4 7.4 10.6 2 7.0 7.3 1.3 1 0 0 1 1 1 0 Toxin in Odyssella and Amoebophilus DUF3450 PF11932.3 gi|385803808|ref|YP_005840208.1| - 1.5 8.0 27.2 0.21 10.8 5.2 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF3450) DUF2229 PF09989.4 gi|385803808|ref|YP_005840208.1| - 1.8 7.9 6.9 0.56 9.6 2.1 2.1 2 1 1 3 3 3 0 CoA enzyme activase uncharacterised domain (DUF2229) GrpE PF01025.14 gi|385803808|ref|YP_005840208.1| - 1.9 8.0 16.4 1.2 8.6 9.3 2.2 1 1 0 1 1 1 0 GrpE SAC3_GANP PF03399.11 gi|385803808|ref|YP_005840208.1| - 2 7.8 7.6 3.8 7.0 5.0 1.7 1 1 1 2 2 2 0 SAC3/GANP/Nin1/mts3/eIF-3 p25 family Spc7 PF08317.6 gi|385803808|ref|YP_005840208.1| - 2.5 6.6 23.7 0.34 9.5 11.3 2.3 1 1 1 2 2 2 0 Spc7 kinetochore protein Tropomyosin_1 PF12718.2 gi|385803808|ref|YP_005840208.1| - 2.9 7.7 29.9 0.3 10.9 13.9 2.6 1 1 1 2 2 2 0 Tropomyosin like Occludin_ELL PF07303.8 gi|385803808|ref|YP_005840208.1| - 3.2 8.5 13.9 3.2 8.5 3.5 3.2 2 1 1 3 3 3 0 Occludin homology domain CENP-Q PF13094.1 gi|385803808|ref|YP_005840208.1| - 3.2 7.7 24.7 0.15 12.0 11.8 2.5 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DASH_Dad1 PF08649.5 gi|385803808|ref|YP_005840208.1| - 3.3 7.4 13.5 0.7 9.6 0.8 4.0 4 1 1 5 5 5 0 DASH complex subunit Dad1 Baculo_PEP_C PF04513.7 gi|385803808|ref|YP_005840208.1| - 5.1 6.9 14.4 0.78 9.5 4.6 3.0 2 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus TMPIT PF07851.8 gi|385803808|ref|YP_005840208.1| - 8.3 5.3 14.5 0.42 9.6 5.2 2.0 1 1 1 2 2 2 0 TMPIT-like protein DUF1664 PF07889.7 gi|385803808|ref|YP_005840208.1| - 9.2 6.0 14.9 2.9 7.7 2.0 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) DUF2762 PF10960.3 gi|385803808|ref|YP_005840208.1| - 9.3 6.0 13.0 2.3 8.0 3.1 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF2762) PAS_9 PF13426.1 gi|385803809|ref|YP_005840209.1| - 3.1e-21 75.6 0.1 1.6e-19 70.1 0.0 2.9 2 1 0 2 2 2 1 PAS domain PAS PF00989.19 gi|385803809|ref|YP_005840209.1| - 3.5e-17 62.2 0.4 7.7e-14 51.4 0.0 3.1 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.5 gi|385803809|ref|YP_005840209.1| - 1.1e-09 38.2 0.2 9.1e-07 28.9 0.0 3.4 2 1 0 2 2 2 1 PAS fold HATPase_c PF02518.21 gi|385803809|ref|YP_005840209.1| - 2.1e-08 33.8 0.2 9.8e-08 31.7 0.1 2.1 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|385803809|ref|YP_005840209.1| - 1.5e-07 31.0 0.1 4e-05 23.3 0.0 3.2 4 0 0 4 4 4 1 PAS domain PAS_3 PF08447.6 gi|385803809|ref|YP_005840209.1| - 4.7e-05 23.4 0.0 0.0001 22.2 0.0 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|385803809|ref|YP_005840209.1| - 0.00016 21.4 0.7 0.00052 19.8 0.5 1.9 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.2 gi|385803809|ref|YP_005840209.1| - 0.0094 15.9 0.7 2.2 8.3 0.1 3.5 2 1 1 3 3 3 1 PAS fold OST3_OST6 PF04756.8 gi|385803809|ref|YP_005840209.1| - 0.051 13.1 0.3 0.12 11.9 0.2 1.5 1 0 0 1 1 1 0 OST3 / OST6 family HisKA PF00512.20 gi|385803809|ref|YP_005840209.1| - 0.082 12.9 0.4 0.26 11.3 0.2 1.9 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain Methyltransf_18 PF12847.2 gi|385803813|ref|YP_005840213.1| - 2.2e-06 28.2 0.0 7.9e-06 26.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|385803813|ref|YP_005840213.1| - 5.1e-05 23.6 0.1 0.00053 20.4 0.1 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|385803813|ref|YP_005840213.1| - 5.7e-05 22.8 0.0 0.00014 21.6 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|385803813|ref|YP_005840213.1| - 0.00013 22.3 0.1 0.024 15.1 0.1 2.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385803813|ref|YP_005840213.1| - 0.0011 18.5 0.0 0.031 13.8 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|385803813|ref|YP_005840213.1| - 0.0018 18.6 0.0 0.0034 17.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|385803813|ref|YP_005840213.1| - 0.0053 16.7 0.9 0.023 14.7 0.1 2.4 2 2 0 2 2 2 1 Methyltransferase domain DUF4278 PF14105.1 gi|385803813|ref|YP_005840213.1| - 0.14 12.1 0.6 0.64 10.0 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4278) PTPS PF01242.14 gi|385803814|ref|YP_005840214.1| - 5.1e-20 71.3 0.0 5.7e-20 71.2 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase ADH_zinc_N PF00107.21 gi|385803815|ref|YP_005840215.1| - 5.1e-13 48.6 0.0 1.4e-12 47.3 0.0 1.7 1 0 0 1 1 1 1 Zinc-binding dehydrogenase GGDN PF05165.7 gi|385803816|ref|YP_005840216.1| - 9.5e-90 299.9 0.2 1.3e-89 299.5 0.2 1.0 1 0 0 1 1 1 1 GGDN family Sulfatase PF00884.18 gi|385803817|ref|YP_005840217.1| - 3.4e-23 82.3 1.6 5.3e-23 81.6 1.1 1.3 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|385803817|ref|YP_005840217.1| - 0.013 14.7 1.3 0.024 13.9 0.1 2.0 2 0 0 2 2 2 0 Type I phosphodiesterase / nucleotide pyrophosphatase Cpl-7 PF08230.6 gi|385803817|ref|YP_005840217.1| - 0.031 14.0 0.0 1.4 8.6 0.0 2.5 2 0 0 2 2 2 0 Cpl-7 lysozyme C-terminal domain zf-CDGSH PF09360.5 gi|385803818|ref|YP_005840218.1| - 2.6e-14 52.7 0.2 4e-14 52.1 0.2 1.3 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type ArsA_ATPase PF02374.10 gi|385803819|ref|YP_005840219.1| - 4.8e-77 258.9 0.0 5.5e-77 258.8 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|385803819|ref|YP_005840219.1| - 5.8e-09 35.6 0.1 2.8e-08 33.4 0.1 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|385803819|ref|YP_005840219.1| - 3.5e-05 23.7 0.2 0.0015 18.5 0.0 2.8 2 1 1 3 3 3 1 AAA domain Fer4_NifH PF00142.13 gi|385803819|ref|YP_005840219.1| - 0.00028 20.1 0.1 0.00061 19.0 0.0 1.5 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|385803819|ref|YP_005840219.1| - 0.01 15.2 0.6 0.01 15.2 0.4 2.2 2 1 0 2 2 2 0 AAA domain YhjQ PF06564.7 gi|385803819|ref|YP_005840219.1| - 0.017 14.5 0.0 0.028 13.7 0.0 1.3 1 0 0 1 1 1 0 YhjQ protein PhoH PF02562.11 gi|385803819|ref|YP_005840219.1| - 0.019 14.1 0.0 0.036 13.3 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein KaiC PF06745.8 gi|385803819|ref|YP_005840219.1| - 0.032 13.3 0.0 0.57 9.2 0.0 2.2 1 1 1 2 2 2 0 KaiC AAA_10 PF12846.2 gi|385803819|ref|YP_005840219.1| - 0.041 13.3 0.1 0.067 12.6 0.1 1.5 1 1 0 1 1 1 0 AAA-like domain SRP54 PF00448.17 gi|385803819|ref|YP_005840219.1| - 0.08 12.3 0.7 0.44 9.9 0.1 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DPRP PF04244.8 gi|385803820|ref|YP_005840220.1| - 2.5e-57 193.9 0.0 8e-57 192.3 0.0 1.8 2 0 0 2 2 2 1 Deoxyribodipyrimidine photo-lyase-related protein FAD_binding_7 PF03441.9 gi|385803820|ref|YP_005840220.1| - 1.9e-09 37.1 0.4 9.5e-09 34.8 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain of DNA photolyase RNase_H PF00075.19 gi|385803821|ref|YP_005840221.1| - 2.9e-11 43.8 0.0 4e-11 43.3 0.0 1.2 1 0 0 1 1 1 1 RNase H RVT_3 PF13456.1 gi|385803821|ref|YP_005840221.1| - 2e-06 27.4 0.0 3.1e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like TrmB PF01978.14 gi|385803822|ref|YP_005840222.1| - 8.2e-09 35.0 0.0 1.2e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|385803822|ref|YP_005840222.1| - 0.00018 21.1 0.5 0.00066 19.2 0.1 1.9 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|385803822|ref|YP_005840222.1| - 0.00088 18.8 0.2 0.0033 17.0 0.1 2.1 2 1 1 3 3 3 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|385803822|ref|YP_005840222.1| - 0.00091 18.5 0.1 0.0042 16.4 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|385803822|ref|YP_005840222.1| - 0.0031 17.0 0.0 0.0051 16.2 0.0 1.4 1 1 0 1 1 1 1 TFIIE alpha subunit Desulfoferrod_N PF06397.7 gi|385803822|ref|YP_005840222.1| - 0.0076 15.6 3.5 0.021 14.1 2.4 1.8 1 1 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain MarR PF01047.17 gi|385803822|ref|YP_005840222.1| - 0.0089 15.7 0.1 0.025 14.2 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|385803822|ref|YP_005840222.1| - 0.0098 15.6 0.3 0.022 14.5 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|385803822|ref|YP_005840222.1| - 0.016 14.7 0.0 0.031 13.8 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|385803822|ref|YP_005840222.1| - 0.053 13.6 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator DUF2576 PF10845.3 gi|385803822|ref|YP_005840222.1| - 0.089 11.9 1.3 0.45 9.7 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2576) HTH_29 PF13551.1 gi|385803822|ref|YP_005840222.1| - 0.093 12.8 0.2 0.17 12.0 0.1 1.5 1 1 0 1 1 1 0 Winged helix-turn helix zf-LITAF-like PF10601.4 gi|385803823|ref|YP_005840223.1| - 0.16 11.8 0.9 4.3 7.2 0.0 2.2 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain GATA PF00320.22 gi|385803823|ref|YP_005840223.1| - 0.43 9.9 2.0 0.76 9.1 0.1 2.0 2 0 0 2 2 2 0 GATA zinc finger zf-piccolo PF05715.8 gi|385803823|ref|YP_005840223.1| - 0.65 10.0 3.2 1.3 9.0 2.2 1.8 1 1 0 1 1 1 0 Piccolo Zn-finger DUF1576 PF07613.6 gi|385803824|ref|YP_005840224.1| - 2.1 7.8 9.6 4.2 6.8 3.3 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1576) MFS_1 PF07690.11 gi|385803825|ref|YP_005840225.1| - 1.5e-33 115.9 65.8 6.6e-29 100.7 26.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily EamA PF00892.15 gi|385803826|ref|YP_005840226.1| - 2.6e-25 88.9 31.7 2.2e-14 53.6 7.1 2.3 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|385803826|ref|YP_005840226.1| - 4.2e-08 33.3 39.9 3.1e-07 30.5 7.6 3.4 1 1 2 3 3 3 3 Multidrug resistance efflux transporter UPF0542 PF15086.1 gi|385803826|ref|YP_005840226.1| - 0.041 13.5 0.4 0.11 12.2 0.3 1.8 1 0 0 1 1 1 0 Uncharacterised protein family UPF0542 FAD_binding_2 PF00890.19 gi|385803827|ref|YP_005840227.1| - 1.9e-89 300.4 6.7 2.5e-89 300.0 4.7 1.2 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|385803827|ref|YP_005840227.1| - 6e-20 71.4 0.0 1.5e-19 70.1 0.0 1.7 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|385803827|ref|YP_005840227.1| - 7.3e-08 32.5 2.4 3.1e-06 27.2 1.6 2.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|385803827|ref|YP_005840227.1| - 1.9e-07 30.3 4.0 6.3e-07 28.6 2.8 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|385803827|ref|YP_005840227.1| - 9.2e-05 21.6 1.0 0.0002 20.5 0.3 1.8 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|385803827|ref|YP_005840227.1| - 9.3e-05 21.0 1.5 0.098 11.1 0.0 2.8 3 0 0 3 3 3 2 HI0933-like protein GIDA PF01134.17 gi|385803827|ref|YP_005840227.1| - 0.0045 15.9 1.2 0.036 12.9 0.8 2.1 1 1 0 1 1 1 1 Glucose inhibited division protein A ThiF PF00899.16 gi|385803827|ref|YP_005840227.1| - 0.039 13.7 0.4 0.09 12.6 0.3 1.6 1 0 0 1 1 1 0 ThiF family Pyr_redox_3 PF13738.1 gi|385803827|ref|YP_005840227.1| - 0.044 13.8 0.1 3.4 7.6 0.1 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|385803827|ref|YP_005840227.1| - 0.087 12.9 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ApbA PF02558.11 gi|385803827|ref|YP_005840227.1| - 0.13 11.6 0.6 0.24 10.8 0.4 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DUF457 PF04307.9 gi|385803828|ref|YP_005840228.1| - 1.6e-14 53.5 11.3 2e-14 53.2 7.8 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF3976 PF13121.1 gi|385803828|ref|YP_005840228.1| - 0.027 14.3 0.7 0.027 14.3 0.5 3.0 3 1 0 3 3 3 0 Domain of unknown function (DUF3976) PDGLE PF13190.1 gi|385803828|ref|YP_005840228.1| - 0.27 10.9 8.9 0.74 9.5 0.1 3.5 2 2 2 4 4 4 0 PDGLE domain YrvL PF14184.1 gi|385803828|ref|YP_005840228.1| - 0.33 10.7 4.6 0.11 12.3 0.4 2.0 2 0 0 2 2 2 0 Regulatory protein YrvL zf-RING_3 PF14369.1 gi|385803830|ref|YP_005840230.1| - 0.00041 20.2 0.7 0.00054 19.8 0.5 1.1 1 0 0 1 1 1 1 zinc-finger Zn-ribbon_8 PF09723.5 gi|385803830|ref|YP_005840230.1| - 0.094 12.6 0.7 0.14 12.1 0.5 1.3 1 1 0 1 1 1 0 Zinc ribbon domain ZZ PF00569.12 gi|385803830|ref|YP_005840230.1| - 0.12 11.9 0.9 0.98 9.0 0.0 2.0 2 0 0 2 2 2 0 Zinc finger, ZZ type zf-C2H2 PF00096.21 gi|385803830|ref|YP_005840230.1| - 0.12 12.7 1.0 2.6 8.5 0.0 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type DZR PF12773.2 gi|385803830|ref|YP_005840230.1| - 0.12 12.2 1.4 0.18 11.6 1.0 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-TFIIB PF13453.1 gi|385803830|ref|YP_005840230.1| - 0.14 11.4 0.8 0.16 11.1 0.5 1.2 1 0 0 1 1 1 0 Transcription factor zinc-finger zinc_ribbon_5 PF13719.1 gi|385803830|ref|YP_005840230.1| - 2.5 7.7 6.5 1.7 8.3 0.9 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|385803830|ref|YP_005840230.1| - 2.8 7.7 6.8 1.7 8.3 0.9 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DAO PF01266.19 gi|385803831|ref|YP_005840231.1| - 7.5e-09 34.9 1.1 8.4e-06 24.9 1.0 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|385803831|ref|YP_005840231.1| - 1.1e-08 35.1 0.2 1e-07 32.0 0.0 1.9 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|385803831|ref|YP_005840231.1| - 4.7e-08 32.3 2.2 7e-08 31.7 0.9 1.7 1 1 1 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|385803831|ref|YP_005840231.1| - 5.7e-08 32.0 3.4 2.4e-06 26.6 0.1 2.9 1 1 1 3 3 3 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|385803831|ref|YP_005840231.1| - 2.5e-05 22.9 0.3 0.00015 20.3 0.1 1.9 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.2 gi|385803831|ref|YP_005840231.1| - 4.5e-05 22.7 0.2 6.6e-05 22.1 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|385803831|ref|YP_005840231.1| - 9.7e-05 22.5 3.0 0.22 11.5 1.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|385803831|ref|YP_005840231.1| - 0.00021 20.4 0.1 0.00032 19.8 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.13 gi|385803831|ref|YP_005840231.1| - 0.00035 20.2 0.5 0.0008 19.1 0.4 1.6 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|385803831|ref|YP_005840231.1| - 0.00048 20.0 0.1 0.0011 18.9 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|385803831|ref|YP_005840231.1| - 0.00068 19.9 0.7 0.0015 18.9 0.5 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|385803831|ref|YP_005840231.1| - 0.002 17.2 0.4 0.0084 15.2 0.1 1.9 2 0 0 2 2 2 1 Thi4 family AlaDh_PNT_C PF01262.16 gi|385803831|ref|YP_005840231.1| - 0.0024 17.4 2.1 0.0036 16.8 1.1 1.8 1 1 1 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|385803831|ref|YP_005840231.1| - 0.063 13.5 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Lycopene_cycl PF05834.7 gi|385803831|ref|YP_005840231.1| - 0.069 12.0 1.4 0.13 11.1 0.6 1.7 1 1 1 2 2 2 0 Lycopene cyclase protein Pico_P1A PF02226.11 gi|385803832|ref|YP_005840232.1| - 0.018 14.7 0.1 0.032 13.9 0.1 1.3 1 0 0 1 1 1 0 Picornavirus coat protein (VP4) BALF1 PF06861.6 gi|385803832|ref|YP_005840232.1| - 0.03 13.7 0.0 0.046 13.1 0.0 1.3 1 0 0 1 1 1 0 BALF1 protein TetR_N PF00440.18 gi|385803832|ref|YP_005840232.1| - 0.16 11.6 0.1 3.5 7.3 0.0 2.6 3 0 0 3 3 3 0 Bacterial regulatory proteins, tetR family adh_short PF00106.20 gi|385803833|ref|YP_005840233.1| - 1.2e-36 126.1 2.6 1.2e-36 126.1 1.8 1.7 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|385803833|ref|YP_005840233.1| - 3.6e-15 56.0 0.9 5.5e-15 55.4 0.6 1.2 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|385803833|ref|YP_005840233.1| - 2.4e-14 53.7 0.0 3.4e-14 53.1 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|385803833|ref|YP_005840233.1| - 6e-05 22.5 0.2 0.00015 21.2 0.1 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|385803833|ref|YP_005840233.1| - 7e-05 22.9 2.9 0.00011 22.2 2.0 1.5 1 1 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|385803833|ref|YP_005840233.1| - 0.0011 17.8 0.0 0.0015 17.4 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein F420_oxidored PF03807.12 gi|385803833|ref|YP_005840233.1| - 0.0018 18.6 0.4 0.0037 17.6 0.3 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|385803833|ref|YP_005840233.1| - 0.0098 15.3 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|385803833|ref|YP_005840233.1| - 0.014 15.0 3.7 0.029 14.0 1.1 2.3 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Eno-Rase_NADH_b PF12242.3 gi|385803833|ref|YP_005840233.1| - 0.032 14.0 0.2 0.095 12.5 0.1 1.8 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NAD_Gly3P_dh_N PF01210.18 gi|385803833|ref|YP_005840233.1| - 0.036 13.8 0.1 0.064 12.9 0.1 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_7 PF13241.1 gi|385803833|ref|YP_005840233.1| - 0.039 14.2 0.6 0.078 13.2 0.1 1.7 2 0 0 2 2 2 0 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|385803833|ref|YP_005840233.1| - 0.045 12.9 0.0 0.087 11.9 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CoA_binding_2 PF13380.1 gi|385803833|ref|YP_005840233.1| - 0.057 13.5 0.3 1.3 9.2 0.2 2.5 3 0 0 3 3 3 0 CoA binding domain MR_MLE_C PF13378.1 gi|385803833|ref|YP_005840233.1| - 0.092 12.7 0.2 0.45 10.5 0.0 2.1 1 1 1 2 2 2 0 Enolase C-terminal domain-like Shikimate_DH PF01488.15 gi|385803833|ref|YP_005840233.1| - 0.095 12.8 0.1 0.19 11.8 0.1 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Bmp PF02608.9 gi|385803834|ref|YP_005840234.1| - 7.3e-57 192.4 2.9 1.1e-56 191.8 2.0 1.2 1 0 0 1 1 1 1 Basic membrane protein OMP_b-brl_2 PF13568.1 gi|385803834|ref|YP_005840234.1| - 0.0016 18.3 0.1 0.0032 17.3 0.0 1.5 1 0 0 1 1 1 1 Outer membrane protein beta-barrel domain Peripla_BP_4 PF13407.1 gi|385803834|ref|YP_005840234.1| - 0.0017 17.7 6.2 0.0036 16.7 4.3 1.5 1 1 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.4 gi|385803834|ref|YP_005840234.1| - 0.11 12.5 0.6 0.11 12.5 0.4 2.4 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_2 PF02653.11 gi|385803836|ref|YP_005840236.1| - 1.6e-45 155.1 29.9 1.6e-45 155.1 20.7 2.0 1 1 1 2 2 2 2 Branched-chain amino acid transport system / permease component DUF1378 PF07125.6 gi|385803836|ref|YP_005840236.1| - 0.072 13.0 0.7 0.22 11.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1378) BPD_transp_2 PF02653.11 gi|385803837|ref|YP_005840237.1| - 1.2e-38 132.6 35.8 1.2e-38 132.6 24.8 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component DUF3093 PF11292.3 gi|385803837|ref|YP_005840237.1| - 3.4 7.4 7.8 5.6 6.7 0.0 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF3093) Proteasome PF00227.21 gi|385803838|ref|YP_005840238.1| - 7.7e-52 175.3 0.0 9.7e-52 175.0 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|385803838|ref|YP_005840238.1| - 1.7e-12 46.3 0.2 2.8e-12 45.6 0.1 1.4 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature DUF4169 PF13770.1 gi|385803838|ref|YP_005840238.1| - 0.022 14.7 0.1 0.044 13.7 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4169) DHFR_1 PF00186.14 gi|385803839|ref|YP_005840239.1| - 4.9e-47 159.4 0.0 6.1e-47 159.1 0.0 1.1 1 0 0 1 1 1 1 Dihydrofolate reductase Thymidylat_synt PF00303.14 gi|385803840|ref|YP_005840240.1| - 1.6e-92 309.3 0.0 1.8e-92 309.1 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase Lactamase_B PF00753.22 gi|385803841|ref|YP_005840241.1| - 1.2e-20 73.9 4.3 1.5e-20 73.6 3.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|385803841|ref|YP_005840241.1| - 0.00059 19.4 2.1 0.00089 18.8 1.5 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|385803841|ref|YP_005840241.1| - 0.13 11.9 1.7 0.3 10.7 1.2 1.8 1 1 0 1 1 1 0 Beta-lactamase superfamily domain zf-CSL PF05207.8 gi|385803843|ref|YP_005840243.1| - 0.041 13.4 0.4 0.054 13.0 0.3 1.2 1 0 0 1 1 1 0 CSL zinc finger cEGF PF12662.2 gi|385803843|ref|YP_005840243.1| - 0.15 11.7 1.1 0.22 11.2 0.7 1.5 1 1 0 1 1 1 0 Complement Clr-like EGF-like Tnp_DNA_bind PF14706.1 gi|385803844|ref|YP_005840244.1| - 1e-24 85.9 0.0 1.8e-24 85.2 0.0 1.4 1 0 0 1 1 1 1 Transposase DNA-binding DDE_Tnp_1 PF01609.16 gi|385803844|ref|YP_005840244.1| - 9.8e-06 25.2 0.1 2.3e-05 24.0 0.1 1.6 2 0 0 2 2 2 1 Transposase DDE domain Dimer_Tnp_Tn5 PF02281.11 gi|385803844|ref|YP_005840244.1| - 0.063 13.3 0.1 0.17 12.0 0.0 1.7 2 0 0 2 2 2 0 Transposase Tn5 dimerisation domain Sod_Fe_C PF02777.13 gi|385803845|ref|YP_005840245.1| - 1.9e-36 124.1 0.1 3.1e-36 123.4 0.1 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|385803845|ref|YP_005840245.1| - 6.5e-29 100.0 0.8 1e-28 99.4 0.5 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain DUF2237 PF09996.4 gi|385803846|ref|YP_005840246.1| - 5.8e-51 170.8 0.0 6.8e-51 170.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2237) FAD_binding_7 PF03441.9 gi|385803847|ref|YP_005840247.1| - 1.2e-101 339.5 0.7 1.6e-101 339.1 0.5 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|385803847|ref|YP_005840247.1| - 2.1e-44 151.2 0.1 1.5e-43 148.4 0.0 2.1 2 0 0 2 2 2 1 DNA photolyase MAF_flag10 PF01973.13 gi|385803848|ref|YP_005840248.1| - 4.8e-26 91.2 0.0 6.4e-26 90.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 Pterin_bind PF00809.17 gi|385803849|ref|YP_005840249.1| - 3.4e-30 105.0 0.0 6.5e-30 104.0 0.0 1.5 1 0 0 1 1 1 1 Pterin binding enzyme SpoU_methylase PF00588.14 gi|385803851|ref|YP_005840251.1| - 4.2e-30 104.4 0.0 6.8e-30 103.8 0.0 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family DUF1675 PF07897.6 gi|385803851|ref|YP_005840251.1| - 0.016 15.1 0.6 0.021 14.7 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1675) GatB_N PF02934.10 gi|385803852|ref|YP_005840252.1| - 2.5e-73 246.4 0.0 3.4e-73 246.0 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|385803852|ref|YP_005840252.1| - 7.5e-21 74.3 0.0 2e-20 72.9 0.0 1.8 2 0 0 2 2 2 1 GatB domain GAD PF02938.9 gi|385803852|ref|YP_005840252.1| - 7.9e-13 48.3 0.0 1.7e-12 47.3 0.0 1.6 1 0 0 1 1 1 1 GAD domain YqeY PF09424.5 gi|385803852|ref|YP_005840252.1| - 0.0029 17.4 0.4 0.0086 15.9 0.3 1.8 1 0 0 1 1 1 1 Yqey-like protein Zn-ribbon_8 PF09723.5 gi|385803853|ref|YP_005840253.1| - 0.0023 17.8 1.9 0.0035 17.2 1.3 1.3 1 0 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|385803853|ref|YP_005840253.1| - 0.0029 17.0 0.2 0.005 16.2 0.2 1.5 1 1 0 1 1 1 1 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|385803853|ref|YP_005840253.1| - 0.0037 16.9 1.9 0.016 14.8 0.1 2.1 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit zf-C2H2_6 PF13912.1 gi|385803853|ref|YP_005840253.1| - 0.004 17.0 2.5 0.013 15.3 0.1 2.1 2 0 0 2 2 2 1 C2H2-type zinc finger DZR PF12773.2 gi|385803853|ref|YP_005840253.1| - 0.015 15.0 2.2 0.021 14.6 1.5 1.3 1 1 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|385803853|ref|YP_005840253.1| - 0.017 14.8 0.3 0.017 14.7 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_5 PF13719.1 gi|385803853|ref|YP_005840253.1| - 0.026 14.0 0.4 0.64 9.6 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain C1_4 PF07975.7 gi|385803853|ref|YP_005840253.1| - 0.028 14.4 0.3 0.037 14.0 0.2 1.2 1 0 0 1 1 1 0 TFIIH C1-like domain zinc_ribbon_4 PF13717.1 gi|385803853|ref|YP_005840253.1| - 0.029 14.0 0.5 0.78 9.4 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|385803853|ref|YP_005840253.1| - 0.031 13.4 2.0 3.1 7.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain RNHCP PF12647.2 gi|385803853|ref|YP_005840253.1| - 0.047 13.5 0.1 0.053 13.3 0.1 1.1 1 0 0 1 1 1 0 RNHCP domain C1_3 PF07649.7 gi|385803853|ref|YP_005840253.1| - 0.056 13.5 1.5 0.13 12.2 0.1 2.0 2 0 0 2 2 2 0 C1-like domain zf-HIT PF04438.11 gi|385803853|ref|YP_005840253.1| - 0.072 12.7 0.3 6.9 6.4 0.0 2.2 2 0 0 2 2 2 0 HIT zinc finger A2L_zn_ribbon PF08792.5 gi|385803853|ref|YP_005840253.1| - 0.076 12.4 2.1 1 8.8 0.1 2.6 3 0 0 3 3 3 0 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|385803853|ref|YP_005840253.1| - 0.095 12.5 4.2 2.1 8.2 0.3 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DUF2296 PF10058.4 gi|385803853|ref|YP_005840253.1| - 0.1 12.3 0.5 0.16 11.7 0.3 1.3 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) zf-NADH-PPase PF09297.6 gi|385803853|ref|YP_005840253.1| - 0.1 12.1 2.9 0.18 11.3 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Rubredoxin PF00301.15 gi|385803853|ref|YP_005840253.1| - 0.12 12.2 3.3 2 8.3 2.3 2.1 1 1 0 1 1 1 0 Rubredoxin DUF1610 PF07754.6 gi|385803853|ref|YP_005840253.1| - 0.15 12.2 2.0 0.98 9.5 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) PhnA_Zn_Ribbon PF08274.7 gi|385803853|ref|YP_005840253.1| - 0.18 11.6 1.6 0.97 9.2 1.3 1.9 1 1 1 2 2 2 0 PhnA Zinc-Ribbon zf-C2H2_3 PF13878.1 gi|385803853|ref|YP_005840253.1| - 0.31 10.6 1.7 0.43 10.1 0.0 1.9 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO DNA_RNApol_7kD PF03604.8 gi|385803853|ref|YP_005840253.1| - 0.51 9.8 2.8 6 6.4 0.2 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-RING_3 PF14369.1 gi|385803853|ref|YP_005840253.1| - 0.69 9.9 3.7 3.1 7.8 0.4 2.1 1 1 1 2 2 2 0 zinc-finger PHD PF00628.24 gi|385803853|ref|YP_005840253.1| - 0.73 9.5 3.5 7.1 6.4 2.5 2.0 1 1 0 1 1 1 0 PHD-finger RRN7 PF11781.3 gi|385803853|ref|YP_005840253.1| - 2.1 7.9 8.1 8.5 5.9 0.1 2.7 2 1 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Lyase_1 PF00206.15 gi|385803854|ref|YP_005840254.1| - 2.5e-105 352.0 0.1 3.2e-105 351.7 0.1 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|385803854|ref|YP_005840254.1| - 4.2e-23 81.1 0.1 1.4e-22 79.5 0.1 2.0 1 0 0 1 1 1 1 Fumarase C C-terminus LacAB_rpiB PF02502.13 gi|385803854|ref|YP_005840254.1| - 0.045 13.4 0.2 0.13 11.9 0.1 1.7 1 0 0 1 1 1 0 Ribose/Galactose Isomerase BolA PF01722.13 gi|385803855|ref|YP_005840255.1| - 9.8e-22 76.7 0.0 1.1e-21 76.5 0.0 1.1 1 0 0 1 1 1 1 BolA-like protein Aph-1 PF06105.7 gi|385803856|ref|YP_005840256.1| - 0.02 14.1 0.1 0.02 14.1 0.0 1.8 1 1 1 2 2 2 0 Aph-1 protein BPD_transp_1 PF00528.17 gi|385803857|ref|YP_005840257.1| - 2.8e-33 114.9 7.7 2.8e-33 114.9 5.4 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|385803857|ref|YP_005840257.1| - 0.0047 16.2 2.5 0.0047 16.2 1.7 2.5 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|385803858|ref|YP_005840258.1| - 1.3e-36 125.8 13.1 2.1e-36 125.1 9.1 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|385803859|ref|YP_005840259.1| - 2.6e-75 253.5 1.2 3.8e-75 253.0 0.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|385803859|ref|YP_005840259.1| - 0.00015 21.5 2.3 0.00037 20.2 1.6 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|385803860|ref|YP_005840260.1| - 9.7e-58 194.3 0.0 1.4e-29 103.1 0.0 2.6 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|385803860|ref|YP_005840260.1| - 2.5e-41 139.8 3.3 7.5e-22 77.4 0.1 2.6 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|385803860|ref|YP_005840260.1| - 1.1e-15 58.3 0.2 3.1e-07 30.6 0.0 3.9 3 1 0 4 4 4 2 AAA domain SMC_N PF02463.14 gi|385803860|ref|YP_005840260.1| - 5.9e-11 42.0 0.0 2.1e-06 27.1 0.0 3.1 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|385803860|ref|YP_005840260.1| - 7.4e-06 25.3 2.0 0.059 12.9 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|385803860|ref|YP_005840260.1| - 1.7e-05 24.8 0.6 0.17 11.8 0.1 2.9 2 1 0 2 2 2 2 AAA ATPase domain AAA_25 PF13481.1 gi|385803860|ref|YP_005840260.1| - 3.3e-05 23.3 0.1 1 8.7 0.0 4.1 4 0 0 4 4 4 2 AAA domain AAA_22 PF13401.1 gi|385803860|ref|YP_005840260.1| - 3.7e-05 23.8 5.9 0.0073 16.4 0.3 4.3 3 2 0 3 3 3 1 AAA domain ATP-synt_ab PF00006.20 gi|385803860|ref|YP_005840260.1| - 5.2e-05 22.8 0.2 0.025 14.0 0.0 2.8 2 1 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_10 PF12846.2 gi|385803860|ref|YP_005840260.1| - 0.0001 21.8 0.0 0.035 13.5 0.0 2.8 2 0 0 2 2 2 1 AAA-like domain AAA_15 PF13175.1 gi|385803860|ref|YP_005840260.1| - 0.00037 19.6 0.4 0.21 10.5 0.0 2.8 3 0 0 3 3 3 2 AAA ATPase domain AAA_5 PF07728.9 gi|385803860|ref|YP_005840260.1| - 0.00095 18.8 0.0 0.43 10.2 0.0 2.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AIG1 PF04548.11 gi|385803860|ref|YP_005840260.1| - 0.0014 17.7 0.7 0.084 11.9 0.1 2.4 2 0 0 2 2 2 1 AIG1 family DUF258 PF03193.11 gi|385803860|ref|YP_005840260.1| - 0.0042 16.3 0.8 0.71 9.0 0.0 2.7 2 1 0 2 2 2 1 Protein of unknown function, DUF258 Hpr_kinase_C PF07475.7 gi|385803860|ref|YP_005840260.1| - 0.014 14.6 2.6 1.2 8.3 0.0 2.4 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain Sigma54_activat PF00158.21 gi|385803860|ref|YP_005840260.1| - 0.024 14.1 0.8 6.5 6.1 0.0 3.2 4 0 0 4 4 3 0 Sigma-54 interaction domain AAA_18 PF13238.1 gi|385803860|ref|YP_005840260.1| - 0.024 14.9 0.0 2 8.7 0.0 3.1 3 0 0 3 3 2 0 AAA domain NB-ARC PF00931.17 gi|385803860|ref|YP_005840260.1| - 0.06 12.1 1.4 2.6 6.8 0.1 2.3 2 0 0 2 2 2 0 NB-ARC domain RNA_helicase PF00910.17 gi|385803860|ref|YP_005840260.1| - 0.062 13.4 0.0 4.2 7.5 0.0 2.6 2 0 0 2 2 2 0 RNA helicase AAA_30 PF13604.1 gi|385803860|ref|YP_005840260.1| - 0.062 12.8 1.2 1.9 8.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|385803860|ref|YP_005840260.1| - 0.077 11.8 1.4 1.7 7.4 0.0 2.7 3 0 0 3 3 3 0 Type II/IV secretion system protein PRK PF00485.13 gi|385803860|ref|YP_005840260.1| - 0.077 12.5 0.4 0.59 9.6 0.0 2.2 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family DUF87 PF01935.12 gi|385803860|ref|YP_005840260.1| - 0.09 12.5 1.5 13 5.4 0.1 2.8 2 0 0 2 2 2 0 Domain of unknown function DUF87 NACHT PF05729.7 gi|385803860|ref|YP_005840260.1| - 0.094 12.3 0.8 3 7.4 0.0 2.5 2 0 0 2 2 2 0 NACHT domain Zeta_toxin PF06414.7 gi|385803860|ref|YP_005840260.1| - 0.1 11.7 0.5 1.3 8.0 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin AAA PF00004.24 gi|385803860|ref|YP_005840260.1| - 0.1 12.8 0.0 3.6 7.8 0.0 3.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|385803860|ref|YP_005840260.1| - 0.11 11.6 0.0 14 4.7 0.0 2.9 4 0 0 4 4 4 0 Magnesium chelatase, subunit ChlI KaiC PF06745.8 gi|385803860|ref|YP_005840260.1| - 0.14 11.2 0.4 7 5.6 0.0 2.6 2 0 0 2 2 2 0 KaiC DUF3265 PF11665.3 gi|385803860|ref|YP_005840260.1| - 0.98 9.3 2.8 2.8 7.8 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3265) DUF3530 PF12048.3 gi|385803861|ref|YP_005840261.1| - 0.0042 16.1 0.1 0.005 15.8 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3530) HhH-GPD PF00730.20 gi|385803863|ref|YP_005840263.1| - 6e-14 52.2 0.0 9.7e-14 51.5 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|385803863|ref|YP_005840263.1| - 6.9e-09 34.9 0.0 1.3e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif MoCF_biosynth PF00994.19 gi|385803865|ref|YP_005840265.1| - 2e-36 124.5 0.4 3.2e-36 123.9 0.3 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain Lipase_GDSL_2 PF13472.1 gi|385803865|ref|YP_005840265.1| - 0.07 13.2 0.2 0.19 11.8 0.2 1.8 1 1 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family TauE PF01925.14 gi|385803866|ref|YP_005840266.1| - 0.24 10.8 2.6 0.27 10.6 0.6 1.8 2 0 0 2 2 2 0 Sulfite exporter TauE/SafE DUF2110 PF09883.4 gi|385803867|ref|YP_005840267.1| - 2e-90 302.3 0.0 2.5e-90 302.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) TFIIE_alpha PF02002.12 gi|385803868|ref|YP_005840268.1| - 1e-20 73.1 0.1 1.8e-20 72.3 0.0 1.4 2 0 0 2 2 2 1 TFIIE alpha subunit Sigma70_r3 PF04539.11 gi|385803868|ref|YP_005840268.1| - 0.0033 17.2 0.1 0.007 16.2 0.0 1.5 1 0 0 1 1 1 1 Sigma-70 region 3 HTH_20 PF12840.2 gi|385803868|ref|YP_005840268.1| - 0.054 13.3 0.3 0.21 11.3 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HSBP1 PF06825.7 gi|385803868|ref|YP_005840268.1| - 0.45 10.1 2.4 0.97 9.0 0.1 2.1 2 0 0 2 2 2 0 Heat shock factor binding protein 1 Trm56 PF01994.11 gi|385803869|ref|YP_005840269.1| - 1.3e-46 157.2 0.0 1.7e-46 156.8 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 Phage_min_tail PF05939.8 gi|385803869|ref|YP_005840269.1| - 0.076 12.9 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Phage minor tail protein SIS_2 PF13580.1 gi|385803869|ref|YP_005840269.1| - 0.1 12.2 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 SIS domain DAO PF01266.19 gi|385803870|ref|YP_005840270.1| - 3.8e-15 55.6 0.0 6.1e-15 54.9 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|385803870|ref|YP_005840270.1| - 0.011 15.6 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|385803870|ref|YP_005840270.1| - 0.09 13.1 0.1 0.17 12.3 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Epimerase PF01370.16 gi|385803871|ref|YP_005840271.1| - 7.8e-49 166.2 0.0 9.4e-49 165.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|385803871|ref|YP_005840271.1| - 1.3e-22 80.0 0.1 1.7e-22 79.6 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|385803871|ref|YP_005840271.1| - 2.2e-15 56.3 0.1 1.4e-14 53.7 0.1 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|385803871|ref|YP_005840271.1| - 1.5e-14 53.3 0.0 2.1e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|385803871|ref|YP_005840271.1| - 1.2e-10 40.7 0.0 2.6e-08 33.0 0.0 2.2 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|385803871|ref|YP_005840271.1| - 7.5e-08 32.5 0.0 1e-07 32.1 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|385803871|ref|YP_005840271.1| - 0.00019 21.4 0.8 0.00034 20.5 0.1 1.8 2 0 0 2 2 2 1 short chain dehydrogenase TrkA_N PF02254.13 gi|385803871|ref|YP_005840271.1| - 0.0016 18.4 0.1 0.0029 17.5 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain Ldh_1_N PF00056.18 gi|385803871|ref|YP_005840271.1| - 0.0029 17.4 0.1 0.0055 16.5 0.1 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|385803871|ref|YP_005840271.1| - 0.012 14.6 0.2 0.021 13.7 0.1 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NmrA PF05368.8 gi|385803871|ref|YP_005840271.1| - 0.025 13.8 0.4 0.57 9.3 0.1 2.1 2 0 0 2 2 2 0 NmrA-like family DUF3919 PF13057.1 gi|385803871|ref|YP_005840271.1| - 0.027 13.9 0.1 0.051 13.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3919) KR PF08659.5 gi|385803871|ref|YP_005840271.1| - 0.19 11.3 0.8 0.85 9.2 0.4 2.1 1 1 0 1 1 1 0 KR domain DUF2797 PF10977.3 gi|385803872|ref|YP_005840272.1| - 1.9e-66 224.0 0.1 2.2e-66 223.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2797) VASP_tetra PF08776.6 gi|385803873|ref|YP_005840273.1| - 0.035 13.4 0.8 0.059 12.6 0.5 1.4 1 0 0 1 1 1 0 VASP tetramerisation domain ABC_trans_N PF14510.1 gi|385803873|ref|YP_005840273.1| - 0.68 10.0 3.6 6.4 6.9 0.0 2.1 2 0 0 2 2 2 0 ABC-transporter extracellular N-terminal DivIVA PF05103.8 gi|385803873|ref|YP_005840273.1| - 2.3 8.2 7.5 1.5 8.9 0.3 2.0 2 0 0 2 2 2 0 DivIVA protein DUF4140 PF13600.1 gi|385803873|ref|YP_005840273.1| - 4.3 7.8 9.1 0.46 10.9 0.8 2.1 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) IncA PF04156.9 gi|385803873|ref|YP_005840273.1| - 5.2 6.6 6.4 2.1 7.9 0.8 2.0 2 0 0 2 2 2 0 IncA protein Cwf_Cwc_15 PF04889.7 gi|385803873|ref|YP_005840273.1| - 6.1 6.4 19.5 3 7.4 9.5 2.0 2 0 0 2 2 2 0 Cwf15/Cwc15 cell cycle control protein IU_nuc_hydro PF01156.14 gi|385803874|ref|YP_005840274.1| - 2.7e-78 263.3 5.6 3e-78 263.2 3.9 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase DUF1593 PF07632.6 gi|385803874|ref|YP_005840274.1| - 0.044 13.0 0.2 0.79 8.9 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1593) Glycos_transf_1 PF00534.15 gi|385803875|ref|YP_005840275.1| - 5.6e-27 94.2 0.0 1e-24 86.8 0.0 2.3 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|385803875|ref|YP_005840275.1| - 8.7e-14 51.9 0.1 1.7e-13 51.0 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|385803875|ref|YP_005840275.1| - 3.6e-13 49.8 0.0 1.9e-10 41.0 0.0 3.4 4 0 0 4 4 4 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|385803875|ref|YP_005840275.1| - 2.3e-11 43.7 0.0 3.8e-11 43.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|385803875|ref|YP_005840275.1| - 0.0001 22.1 0.0 0.0004 20.2 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|385803875|ref|YP_005840275.1| - 0.026 14.7 0.0 0.087 13.1 0.0 1.8 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|385803876|ref|YP_005840276.1| - 5.1e-20 71.5 0.0 1.8e-19 69.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|385803876|ref|YP_005840276.1| - 1.9e-15 57.2 0.0 1.5e-13 51.0 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|385803876|ref|YP_005840276.1| - 4.4e-11 42.8 0.1 8e-11 42.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|385803876|ref|YP_005840276.1| - 4e-09 36.4 0.0 6.6e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|385803876|ref|YP_005840276.1| - 5e-09 36.5 0.0 7.2e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Rpr2 PF04032.11 gi|385803877|ref|YP_005840277.1| - 3.3e-17 62.1 0.2 3.8e-17 61.9 0.2 1.0 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF164 PF02591.10 gi|385803877|ref|YP_005840277.1| - 0.0031 17.3 1.8 0.0049 16.6 0.6 1.9 2 1 0 2 2 2 1 Putative zinc ribbon domain DUF1771 PF08590.5 gi|385803877|ref|YP_005840277.1| - 0.005 16.8 0.2 0.0073 16.2 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1771) DNA_RNApol_7kD PF03604.8 gi|385803877|ref|YP_005840277.1| - 0.092 12.2 1.1 0.2 11.1 0.1 1.9 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-DNL PF05180.7 gi|385803877|ref|YP_005840277.1| - 0.095 12.4 0.3 0.17 11.5 0.2 1.4 1 0 0 1 1 1 0 DNL zinc finger CRS1_YhbY PF01985.16 gi|385803878|ref|YP_005840278.1| - 1.2e-18 66.8 0.0 1.5e-18 66.5 0.0 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain MS_channel PF00924.13 gi|385803879|ref|YP_005840279.1| - 2.3e-49 167.5 0.1 3.5e-49 166.9 0.0 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel CopD PF05425.8 gi|385803879|ref|YP_005840279.1| - 1.2 9.3 8.9 0.14 12.3 2.5 1.9 1 1 1 2 2 2 0 Copper resistance protein D HD PF01966.17 gi|385803880|ref|YP_005840280.1| - 1.2e-09 38.1 1.3 2.1e-09 37.4 0.9 1.5 1 0 0 1 1 1 1 HD domain MttA_Hcf106 PF02416.11 gi|385803881|ref|YP_005840281.1| - 3e-15 55.0 0.0 3.4e-15 54.9 0.0 1.2 1 0 0 1 1 1 1 mttA/Hcf106 family NSP2-B_epitope PF14757.1 gi|385803881|ref|YP_005840281.1| - 0.0058 16.1 0.3 0.0067 15.9 0.2 1.0 1 0 0 1 1 1 1 Immunogenic region of nsp2 protein of arterivirus polyprotein MatE PF01554.13 gi|385803882|ref|YP_005840282.1| - 3.5e-62 208.8 35.7 8.7e-36 122.9 10.6 2.7 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|385803882|ref|YP_005840282.1| - 7.4e-11 42.0 5.6 7.4e-11 42.0 3.9 4.5 5 1 0 5 5 5 1 Polysaccharide biosynthesis C-terminal domain Lin-8 PF03353.10 gi|385803883|ref|YP_005840283.1| - 0.42 9.8 2.1 0.47 9.6 1.5 1.1 1 0 0 1 1 1 0 Ras-mediated vulval-induction antagonist DUF515 PF04415.7 gi|385803883|ref|YP_005840283.1| - 8.6 4.4 7.3 9.6 4.3 5.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF515) Glycos_transf_1 PF00534.15 gi|385803884|ref|YP_005840284.1| - 3.4e-29 101.4 0.0 5.7e-29 100.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|385803884|ref|YP_005840284.1| - 3.4e-17 62.8 0.0 9.3e-17 61.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|385803884|ref|YP_005840284.1| - 5e-16 59.2 0.4 9.2e-16 58.3 0.3 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|385803884|ref|YP_005840284.1| - 1.8e-08 34.2 0.0 4e-08 33.1 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.6 gi|385803884|ref|YP_005840284.1| - 7.9e-06 25.5 0.2 0.15 11.5 0.0 2.8 1 1 1 2 2 2 2 Starch synthase catalytic domain RibD_C PF01872.12 gi|385803885|ref|YP_005840285.1| - 1e-49 168.8 0.1 1.2e-49 168.6 0.1 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Sugar-bind PF04198.8 gi|385803885|ref|YP_005840285.1| - 0.048 12.5 0.0 0.099 11.5 0.0 1.5 2 0 0 2 2 2 0 Putative sugar-binding domain Thioredoxin PF00085.15 gi|385803886|ref|YP_005840286.1| - 3.7e-27 94.0 0.0 4.2e-27 93.8 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|385803886|ref|YP_005840286.1| - 2.3e-08 34.2 0.1 1.7e-07 31.3 0.1 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|385803886|ref|YP_005840286.1| - 6.4e-05 23.0 0.1 0.00034 20.6 0.0 2.0 2 1 1 3 3 3 1 Thioredoxin-like Thioredoxin_7 PF13899.1 gi|385803886|ref|YP_005840286.1| - 0.0006 19.7 0.0 0.00086 19.2 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|385803886|ref|YP_005840286.1| - 0.0015 18.2 0.1 0.0021 17.8 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|385803886|ref|YP_005840286.1| - 0.0039 16.7 0.0 0.0046 16.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin AhpC-TSA PF00578.16 gi|385803886|ref|YP_005840286.1| - 0.043 13.4 0.0 0.047 13.3 0.0 1.2 1 0 0 1 1 1 0 AhpC/TSA family Redoxin PF08534.5 gi|385803886|ref|YP_005840286.1| - 0.062 12.8 0.0 0.097 12.2 0.0 1.5 1 1 0 1 1 1 0 Redoxin Glutaredoxin PF00462.19 gi|385803886|ref|YP_005840286.1| - 0.13 12.3 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Glutaredoxin Sigma70_r3 PF04539.11 gi|385803886|ref|YP_005840286.1| - 0.16 11.8 1.6 2.4 8.0 0.1 2.3 2 0 0 2 2 2 0 Sigma-70 region 3 SBDS PF01172.13 gi|385803889|ref|YP_005840289.1| - 3.5e-23 81.1 0.0 5.4e-23 80.5 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|385803889|ref|YP_005840289.1| - 2.2e-17 62.9 0.0 3.3e-17 62.3 0.0 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain DUF3760 PF12586.3 gi|385803889|ref|YP_005840289.1| - 0.03 14.1 0.1 0.065 13.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3760) YbjN PF10722.4 gi|385803889|ref|YP_005840289.1| - 0.069 13.1 1.5 1.2 9.1 0.0 2.3 2 0 0 2 2 2 0 Putative bacterial sensory transduction regulator Cation_efflux PF01545.16 gi|385803890|ref|YP_005840290.1| - 0.083 11.9 0.1 0.16 11.0 0.0 1.4 2 0 0 2 2 2 0 Cation efflux family Shisa PF13908.1 gi|385803891|ref|YP_005840291.1| - 0.00054 20.1 5.0 0.00068 19.8 3.4 1.0 1 0 0 1 1 1 1 Wnt and FGF inhibitory regulator Myco_19_kDa PF05481.7 gi|385803891|ref|YP_005840291.1| - 4.7 7.0 6.4 0.4 10.4 0.6 1.8 1 1 1 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen DUF4013 PF13197.1 gi|385803892|ref|YP_005840292.1| - 0.0027 17.0 22.0 0.0027 17.0 15.3 3.2 1 1 2 3 3 3 2 Protein of unknown function (DUF4013) MBOAT_2 PF13813.1 gi|385803892|ref|YP_005840292.1| - 0.072 13.1 0.5 18 5.4 0.1 2.6 2 0 0 2 2 2 0 Membrane bound O-acyl transferase family MFS_1 PF07690.11 gi|385803893|ref|YP_005840293.1| - 3e-50 170.9 54.7 1.1e-25 90.1 18.5 2.1 2 0 0 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|385803893|ref|YP_005840293.1| - 1.1e-06 27.1 18.6 0.00034 18.8 5.9 2.4 2 1 0 2 2 2 2 Transmembrane secretion effector OATP PF03137.15 gi|385803893|ref|YP_005840293.1| - 2 6.3 14.1 2.9 5.8 1.0 2.3 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family Acetyltransf_1 PF00583.19 gi|385803894|ref|YP_005840294.1| - 4.7e-13 48.9 0.3 1.9e-12 47.0 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|385803894|ref|YP_005840294.1| - 1.6e-08 34.1 0.2 6.9e-08 32.1 0.0 2.0 2 1 0 2 2 2 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|385803894|ref|YP_005840294.1| - 2.9e-07 30.5 0.0 6.4e-07 29.4 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|385803894|ref|YP_005840294.1| - 6.2e-07 29.4 0.1 8.6e-07 28.9 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|385803894|ref|YP_005840294.1| - 9.4e-07 28.9 0.1 1.9e-06 27.9 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|385803894|ref|YP_005840294.1| - 3.2e-06 27.3 0.0 4.3e-06 26.9 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|385803894|ref|YP_005840294.1| - 0.0009 19.2 0.0 0.0015 18.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|385803894|ref|YP_005840294.1| - 0.0018 18.1 0.1 0.0038 17.0 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|385803894|ref|YP_005840294.1| - 0.011 15.5 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|385803894|ref|YP_005840294.1| - 0.021 14.5 0.1 0.047 13.4 0.0 1.5 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase CDP-OH_P_transf PF01066.16 gi|385803895|ref|YP_005840295.1| - 3.4e-16 59.3 3.7 3.4e-16 59.3 2.5 2.4 1 1 1 2 2 2 1 CDP-alcohol phosphatidyltransferase SNARE_assoc PF09335.6 gi|385803896|ref|YP_005840296.1| - 3.7e-25 88.5 3.4 3.7e-25 88.5 2.3 1.8 2 0 0 2 2 2 1 SNARE associated Golgi protein Sarcolipin PF05366.6 gi|385803896|ref|YP_005840296.1| - 7.2 6.1 8.9 0.49 9.8 1.0 2.6 2 0 0 2 2 2 0 Sarcolipin TBP PF00352.16 gi|385803899|ref|YP_005840299.1| - 4.1e-64 211.9 0.0 4.3e-31 106.1 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|385803899|ref|YP_005840299.1| - 4.8e-05 23.3 0.0 0.29 11.2 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) CENP-F_C_Rb_bdg PF10490.4 gi|385803899|ref|YP_005840299.1| - 0.12 11.7 0.8 8.1 5.8 0.2 2.4 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 ResIII PF04851.10 gi|385803900|ref|YP_005840300.1| - 3.5e-20 72.5 0.0 6.6e-20 71.7 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|385803900|ref|YP_005840300.1| - 1.6e-15 56.6 0.0 2.6e-15 56.0 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|385803900|ref|YP_005840300.1| - 9.2e-13 47.8 0.0 2.3e-12 46.5 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|385803900|ref|YP_005840300.1| - 1.4e-08 34.4 0.0 2.6e-08 33.5 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|385803900|ref|YP_005840300.1| - 0.00085 19.4 1.3 0.01 16.0 0.2 3.1 3 1 0 3 3 3 1 AAA domain HTH_11 PF08279.7 gi|385803900|ref|YP_005840300.1| - 0.0019 17.8 0.0 0.0053 16.3 0.0 1.7 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|385803900|ref|YP_005840300.1| - 0.0019 17.8 0.1 0.0062 16.2 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB AAA_5 PF07728.9 gi|385803900|ref|YP_005840300.1| - 0.0032 17.2 0.1 0.077 12.7 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|385803900|ref|YP_005840300.1| - 0.0032 17.1 0.0 0.01 15.5 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain MarR PF01047.17 gi|385803900|ref|YP_005840300.1| - 0.022 14.4 0.1 0.083 12.6 0.0 2.0 2 0 0 2 2 2 0 MarR family MarR_2 PF12802.2 gi|385803900|ref|YP_005840300.1| - 0.05 13.2 0.0 0.18 11.4 0.0 2.0 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.15 gi|385803900|ref|YP_005840300.1| - 0.11 12.1 0.0 0.25 11.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family AAA PF00004.24 gi|385803900|ref|YP_005840300.1| - 0.12 12.5 0.0 0.33 11.1 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HPP PF04982.8 gi|385803901|ref|YP_005840301.1| - 5.4e-09 35.9 5.5 7.9e-09 35.3 3.8 1.3 1 0 0 1 1 1 1 HPP family PsbR PF04725.7 gi|385803901|ref|YP_005840301.1| - 0.11 12.4 2.0 6.7 6.7 0.0 2.5 2 0 0 2 2 2 0 Photosystem II 10 kDa polypeptide PsbR ABC2_membrane_2 PF12679.2 gi|385803901|ref|YP_005840301.1| - 0.32 9.8 7.3 0.54 9.0 5.1 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein PepSY_TM_2 PF13703.1 gi|385803901|ref|YP_005840301.1| - 0.83 9.8 9.7 0.46 10.6 0.8 2.6 3 0 0 3 3 3 0 PepSY-associated TM helix PAS_4 PF08448.5 gi|385803902|ref|YP_005840302.1| - 0.1 12.6 0.1 0.14 12.2 0.1 1.2 1 0 0 1 1 1 0 PAS fold DUF1660 PF07874.6 gi|385803902|ref|YP_005840302.1| - 0.25 11.6 1.0 0.63 10.3 0.0 1.9 1 1 1 2 2 2 0 Prophage protein (DUF1660) zf-CHY PF05495.7 gi|385803902|ref|YP_005840302.1| - 0.29 11.3 1.7 5.6 7.2 0.0 2.4 1 1 0 2 2 2 0 CHY zinc finger zinc_ribbon_5 PF13719.1 gi|385803902|ref|YP_005840302.1| - 0.42 10.2 3.2 0.82 9.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-UBP PF02148.14 gi|385803902|ref|YP_005840302.1| - 0.53 10.4 2.7 14 5.8 1.9 2.3 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein zinc_ribbon_4 PF13717.1 gi|385803902|ref|YP_005840302.1| - 1.2 8.8 4.0 1.3 8.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain LysE PF01810.13 gi|385803903|ref|YP_005840303.1| - 4.6e-25 88.0 13.3 5.7e-25 87.7 9.2 1.1 1 0 0 1 1 1 1 LysE type translocator Cystatin PF00031.16 gi|385803904|ref|YP_005840304.1| - 0.1 12.7 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Cystatin domain Arylsulfotran_2 PF14269.1 gi|385803905|ref|YP_005840305.1| - 7.4e-14 51.5 0.2 1.4e-12 47.4 0.2 2.3 1 1 0 1 1 1 1 Arylsulfotransferase (ASST) Arylsulfotrans PF05935.6 gi|385803905|ref|YP_005840305.1| - 4.8e-08 31.9 0.7 2.9e-07 29.3 0.2 2.3 2 1 0 2 2 2 1 Arylsulfotransferase (ASST) Fer2 PF00111.22 gi|385803906|ref|YP_005840306.1| - 2.7e-06 27.0 0.1 1.4e-05 24.7 0.1 2.2 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Polyketide_cyc PF03364.15 gi|385803907|ref|YP_005840307.1| - 4.3e-07 29.9 0.0 7.8e-07 29.1 0.0 1.4 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.4 gi|385803907|ref|YP_005840307.1| - 1e-06 28.9 0.2 1.1e-06 28.8 0.1 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Glucodextran_N PF09137.6 gi|385803908|ref|YP_005840308.1| - 1.2e-36 126.4 3.2 2.1e-35 122.2 2.2 2.2 1 1 0 1 1 1 1 Glucodextranase, domain N Glyco_hydro_15 PF00723.16 gi|385803908|ref|YP_005840308.1| - 8.9e-29 100.3 1.2 4.6e-21 74.9 0.0 4.2 3 1 1 4 4 4 3 Glycosyl hydrolases family 15 Prenyltrans_1 PF13243.1 gi|385803908|ref|YP_005840308.1| - 0.097 12.6 7.4 3.5 7.6 0.3 4.0 2 2 2 4 4 4 0 Prenyltransferase-like Alpha-amylase PF00128.19 gi|385803909|ref|YP_005840309.1| - 4.2e-50 170.9 0.0 4.6e-49 167.5 0.0 2.1 1 1 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.3 gi|385803909|ref|YP_005840309.1| - 0.0012 18.8 0.0 0.007 16.4 0.0 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF3459) Glyco_hydro_42C PF08533.5 gi|385803909|ref|YP_005840309.1| - 0.0042 16.5 0.3 0.28 10.7 0.0 3.1 3 0 0 3 3 3 1 Beta-galactosidase C-terminal domain Alpha-amylase_C PF02806.13 gi|385803909|ref|YP_005840309.1| - 0.0065 16.5 0.0 0.018 15.1 0.0 1.8 1 0 0 1 1 1 1 Alpha amylase, C-terminal all-beta domain hDGE_amylase PF14701.1 gi|385803909|ref|YP_005840309.1| - 0.013 14.4 0.0 0.021 13.7 0.0 1.2 1 0 0 1 1 1 0 glucanotransferase domain of human glycogen debranching enzyme Surp PF01805.15 gi|385803909|ref|YP_005840309.1| - 0.24 11.0 0.6 6.8 6.4 0.2 2.5 2 0 0 2 2 2 0 Surp module Zn_Tnp_IS1595 PF12760.2 gi|385803910|ref|YP_005840310.1| - 0.0047 16.7 3.5 0.034 13.9 2.9 1.9 1 1 1 2 2 2 1 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|385803910|ref|YP_005840310.1| - 0.0064 15.6 2.5 0.53 9.5 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Trm112p PF03966.11 gi|385803910|ref|YP_005840310.1| - 0.013 15.8 0.1 0.37 11.1 0.0 2.1 2 0 0 2 2 2 0 Trm112p-like protein OrfB_Zn_ribbon PF07282.6 gi|385803910|ref|YP_005840310.1| - 0.02 14.5 0.5 0.04 13.5 0.3 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TFIIS_C PF01096.13 gi|385803910|ref|YP_005840310.1| - 0.035 13.7 1.0 1.7 8.3 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-RING_3 PF14369.1 gi|385803910|ref|YP_005840310.1| - 0.042 13.8 3.1 2 8.4 0.1 2.3 1 1 1 2 2 2 0 zinc-finger TF_Zn_Ribbon PF08271.7 gi|385803910|ref|YP_005840310.1| - 0.053 12.8 1.6 0.35 10.2 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-nanos PF05741.8 gi|385803910|ref|YP_005840310.1| - 0.079 12.9 1.9 7 6.7 0.1 2.1 1 1 1 2 2 2 0 Nanos RNA binding domain PhnA_Zn_Ribbon PF08274.7 gi|385803910|ref|YP_005840310.1| - 0.14 11.9 2.2 0.9 9.3 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF2296 PF10058.4 gi|385803910|ref|YP_005840310.1| - 0.14 11.8 0.6 3.4 7.5 0.1 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) UPF0547 PF10571.4 gi|385803910|ref|YP_005840310.1| - 0.2 11.3 6.5 0.59 9.8 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C2H2_4 PF13894.1 gi|385803910|ref|YP_005840310.1| - 0.28 11.5 1.2 6 7.4 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Zn_Tnp_IS1 PF03811.8 gi|385803910|ref|YP_005840310.1| - 0.29 10.6 1.8 7.3 6.1 0.1 2.2 2 0 0 2 2 2 0 InsA N-terminal domain Zn-ribbon_8 PF09723.5 gi|385803910|ref|YP_005840310.1| - 0.45 10.5 3.5 1.9 8.4 2.4 1.9 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|385803910|ref|YP_005840310.1| - 0.51 9.9 4.1 9.7 5.8 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|385803910|ref|YP_005840310.1| - 0.53 10.0 4.1 13 5.5 0.1 2.7 3 0 0 3 3 3 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|385803910|ref|YP_005840310.1| - 1.4 8.6 4.2 0.93 9.2 0.2 2.1 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-HIT PF04438.11 gi|385803910|ref|YP_005840310.1| - 2 8.1 4.7 2.2 8.0 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger PMT_2 PF13231.1 gi|385803911|ref|YP_005840311.1| - 5.3e-10 39.4 16.4 5.3e-10 39.4 11.4 2.6 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_transf_22 PF03901.12 gi|385803911|ref|YP_005840311.1| - 0.0082 15.1 4.9 0.015 14.2 3.4 1.4 1 0 0 1 1 1 1 Alg9-like mannosyltransferase family ABC_tran PF00005.22 gi|385803912|ref|YP_005840312.1| - 1.5e-34 119.2 0.0 3.1e-34 118.2 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385803912|ref|YP_005840312.1| - 1.6e-06 28.2 0.2 0.0027 17.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|385803912|ref|YP_005840312.1| - 4.9e-05 23.3 0.3 0.00017 21.6 0.1 1.7 1 1 1 2 2 2 1 AAA ATPase domain TOBE_2 PF08402.5 gi|385803912|ref|YP_005840312.1| - 0.00025 20.9 0.2 0.0041 17.0 0.1 2.9 1 1 0 1 1 1 1 TOBE domain AAA PF00004.24 gi|385803912|ref|YP_005840312.1| - 0.00032 20.9 0.0 0.0021 18.2 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|385803912|ref|YP_005840312.1| - 0.00035 19.3 0.0 0.00052 18.8 0.0 1.4 1 1 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|385803912|ref|YP_005840312.1| - 0.0026 17.9 0.5 0.012 15.6 0.3 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|385803912|ref|YP_005840312.1| - 0.019 14.1 0.1 0.037 13.2 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|385803912|ref|YP_005840312.1| - 0.025 14.5 0.4 0.14 12.0 0.3 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|385803912|ref|YP_005840312.1| - 0.027 14.3 0.1 0.096 12.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|385803912|ref|YP_005840312.1| - 0.032 13.0 0.1 0.048 12.5 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.1 gi|385803912|ref|YP_005840312.1| - 0.037 13.4 0.2 0.11 11.9 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|385803912|ref|YP_005840312.1| - 0.1 12.3 0.2 0.23 11.2 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_15 PF13175.1 gi|385803912|ref|YP_005840312.1| - 0.11 11.5 0.0 0.43 9.5 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.1 gi|385803912|ref|YP_005840312.1| - 0.41 10.5 2.3 2.1 8.3 0.5 2.2 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|385803913|ref|YP_005840313.1| - 3.8e-26 91.7 28.4 2e-15 56.7 5.4 4.0 3 1 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component SBP_bac_6 PF13343.1 gi|385803914|ref|YP_005840314.1| - 1.2e-15 57.5 0.0 1.5e-15 57.1 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|385803914|ref|YP_005840314.1| - 1.3e-10 41.4 0.0 2.1e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|385803914|ref|YP_005840314.1| - 7.3e-08 32.3 0.3 1.3e-07 31.5 0.2 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein UCR_Fe-S_N PF10399.4 gi|385803914|ref|YP_005840314.1| - 0.78 8.9 6.3 0.29 10.3 1.9 2.0 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.4 gi|385803914|ref|YP_005840314.1| - 1.3 9.2 11.6 0.1 12.6 4.2 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence RGP PF03214.8 gi|385803915|ref|YP_005840315.1| - 1.6e-16 60.0 0.0 1.7e-16 59.8 0.0 1.2 1 0 0 1 1 1 1 Reversibly glycosylated polypeptide Cytochrom_C_2 PF01322.15 gi|385803915|ref|YP_005840315.1| - 0.058 13.9 0.2 0.14 12.7 0.1 1.6 1 0 0 1 1 1 0 Cytochrome C' DUF393 PF04134.7 gi|385803916|ref|YP_005840316.1| - 3.7e-08 34.4 0.4 5.5e-08 33.9 0.3 1.4 1 1 0 1 1 1 1 Protein of unknown function, DUF393 DUF123 PF01986.11 gi|385803917|ref|YP_005840317.1| - 5.5e-25 87.3 0.0 7.2e-25 86.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 FAD-oxidase_C PF02913.14 gi|385803918|ref|YP_005840318.1| - 2.2e-64 217.1 0.1 3.7e-64 216.4 0.1 1.4 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|385803918|ref|YP_005840318.1| - 1.4e-40 137.9 0.4 3.3e-40 136.7 0.3 1.7 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.1 gi|385803918|ref|YP_005840318.1| - 3e-08 33.9 4.1 6.2e-08 32.8 2.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|385803918|ref|YP_005840318.1| - 4e-08 33.1 4.8 7.5e-08 32.2 3.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|385803918|ref|YP_005840318.1| - 4.2e-08 33.0 0.0 1.7e-06 27.9 0.0 2.6 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_18 PF13746.1 gi|385803918|ref|YP_005840318.1| - 2.8e-05 24.4 1.7 9.6e-05 22.7 0.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|385803918|ref|YP_005840318.1| - 0.0004 20.5 2.0 0.013 15.7 0.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|385803918|ref|YP_005840318.1| - 0.00045 19.9 3.4 0.013 15.2 0.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|385803918|ref|YP_005840318.1| - 0.0016 19.1 1.2 0.11 13.2 0.1 2.6 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|385803918|ref|YP_005840318.1| - 0.002 18.4 4.1 0.097 13.0 3.1 2.5 1 1 1 2 2 2 1 4Fe-4S dicluster domain Cytokin-bind PF09265.5 gi|385803918|ref|YP_005840318.1| - 0.0075 15.4 0.0 0.015 14.4 0.0 1.4 1 0 0 1 1 1 1 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_21 PF14697.1 gi|385803918|ref|YP_005840318.1| - 0.067 13.0 4.1 0.099 12.5 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|385803918|ref|YP_005840318.1| - 0.18 11.4 14.6 0.048 13.2 2.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|385803918|ref|YP_005840318.1| - 0.81 10.2 6.8 0.16 12.5 0.2 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|385803918|ref|YP_005840318.1| - 4.2 7.3 10.8 0.53 10.2 1.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|385803918|ref|YP_005840318.1| - 7.6 6.6 11.7 0.4 10.6 1.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain DDE_Tnp_1 PF01609.16 gi|385803921|ref|YP_005840321.1| - 1.9e-14 53.7 0.0 3.3e-14 52.9 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.1 gi|385803921|ref|YP_005840321.1| - 0.0024 16.1 0.0 0.0035 15.5 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain group 1 DUF2015 PF09435.5 gi|385803921|ref|YP_005840321.1| - 0.097 12.4 0.2 0.21 11.3 0.1 1.6 1 0 0 1 1 1 0 Fungal protein of unknown function (DUF2015) DDE_5 PF13546.1 gi|385803922|ref|YP_005840322.1| - 5.5e-20 71.3 0.0 8.7e-20 70.6 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.16 gi|385803922|ref|YP_005840322.1| - 2.8e-17 62.9 0.4 5.2e-17 62.0 0.1 1.6 2 1 0 2 2 2 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|385803922|ref|YP_005840322.1| - 0.00011 21.3 0.5 0.00045 19.3 0.3 1.8 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_6 PF13751.1 gi|385803922|ref|YP_005840322.1| - 0.01 15.8 0.0 0.035 14.1 0.0 1.9 2 0 0 2 2 2 0 Transposase DDE domain DUF3267 PF11667.3 gi|385803924|ref|YP_005840324.1| - 1.3e-05 25.3 2.7 1.3e-05 25.3 1.9 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF3267) Peptidase_M50B PF13398.1 gi|385803924|ref|YP_005840324.1| - 0.25 10.6 11.6 4.2 6.6 7.6 2.3 1 1 0 1 1 1 0 Peptidase M50B-like Ibs_toxin PF13956.1 gi|385803924|ref|YP_005840324.1| - 0.52 10.1 3.7 1.5 8.6 2.6 1.8 1 0 0 1 1 1 0 Toxin Ibs, type I toxin-antitoxin system Gly-zipper_OmpA PF13436.1 gi|385803926|ref|YP_005840326.1| - 0.0014 18.2 3.0 0.0014 18.2 2.1 1.6 2 0 0 2 2 2 1 Glycine-zipper containing OmpA-like membrane domain DUF39 PF01837.11 gi|385803926|ref|YP_005840326.1| - 0.072 11.7 1.0 0.1 11.2 0.7 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF39 Gly-zipper_Omp PF13488.1 gi|385803926|ref|YP_005840326.1| - 0.091 12.4 13.6 0.15 11.6 9.4 1.3 1 0 0 1 1 1 0 Glycine zipper Hid1 PF12722.2 gi|385803926|ref|YP_005840326.1| - 0.11 10.2 1.9 0.095 10.3 1.3 1.0 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein DUF1510 PF07423.6 gi|385803926|ref|YP_005840326.1| - 0.22 10.8 10.4 0.32 10.3 7.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) Rick_17kDa_Anti PF05433.10 gi|385803926|ref|YP_005840326.1| - 0.6 9.8 14.2 0.89 9.2 9.9 1.3 1 0 0 1 1 1 0 Glycine zipper 2TM domain Gly-zipper_YMGG PF13441.1 gi|385803926|ref|YP_005840326.1| - 0.84 9.1 13.4 1.4 8.5 9.3 1.3 1 0 0 1 1 1 0 YMGG-like Gly-zipper Bacteriocin_IIc PF10439.4 gi|385803926|ref|YP_005840326.1| - 0.87 9.7 9.8 1.4 9.0 6.8 1.4 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide DDE_Tnp_IS1595 PF12762.2 gi|385803927|ref|YP_005840327.1| - 1.9e-23 82.9 0.0 3e-23 82.3 0.0 1.2 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.2 gi|385803927|ref|YP_005840327.1| - 1.5e-10 40.6 4.8 2.9e-10 39.7 3.3 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|385803927|ref|YP_005840327.1| - 1.3e-05 24.5 6.4 3.3e-05 23.2 4.5 1.7 1 0 0 1 1 1 1 InsA N-terminal domain DUF2089 PF09862.4 gi|385803927|ref|YP_005840327.1| - 0.026 14.3 0.0 0.04 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) Auxin_inducible PF02519.9 gi|385803927|ref|YP_005840327.1| - 0.035 14.1 0.0 0.063 13.3 0.0 1.3 1 0 0 1 1 1 0 Auxin responsive protein zf-ISL3 PF14690.1 gi|385803927|ref|YP_005840327.1| - 0.11 12.6 8.7 0.19 11.7 0.7 2.8 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-Dof PF02701.10 gi|385803927|ref|YP_005840327.1| - 0.11 12.4 3.8 0.2 11.5 2.6 1.4 1 0 0 1 1 1 0 Dof domain, zinc finger Zn-ribbon_8 PF09723.5 gi|385803927|ref|YP_005840327.1| - 0.55 10.2 4.7 6.7 6.7 0.4 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zf-C2H2_6 PF13912.1 gi|385803927|ref|YP_005840327.1| - 5 7.1 6.8 1.1 9.2 0.2 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger PALP PF00291.20 gi|385803928|ref|YP_005840328.1| - 4.3e-57 193.6 0.3 6.1e-57 193.1 0.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.21 gi|385803928|ref|YP_005840328.1| - 0.019 14.4 0.2 0.052 13.0 0.1 1.8 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Thioredoxin PF00085.15 gi|385803929|ref|YP_005840329.1| - 5.9e-06 25.8 0.0 8.1e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin AhpC-TSA PF00578.16 gi|385803929|ref|YP_005840329.1| - 0.00031 20.4 0.0 0.00047 19.8 0.0 1.5 1 1 0 1 1 1 1 AhpC/TSA family Thioredoxin_9 PF14595.1 gi|385803929|ref|YP_005840329.1| - 0.0038 16.7 0.1 0.017 14.6 0.0 1.9 1 1 1 2 2 2 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|385803929|ref|YP_005840329.1| - 0.01 15.9 0.0 0.071 13.2 0.0 2.1 1 1 0 1 1 1 0 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|385803929|ref|YP_005840329.1| - 0.025 14.3 0.1 0.046 13.5 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin domain Redoxin PF08534.5 gi|385803929|ref|YP_005840329.1| - 0.026 14.0 0.0 0.07 12.6 0.0 1.7 1 1 0 1 1 1 0 Redoxin Thioredoxin_2 PF13098.1 gi|385803929|ref|YP_005840329.1| - 0.06 13.5 0.1 0.3 11.2 0.1 2.0 1 1 0 1 1 1 0 Thioredoxin-like domain DUF1923 PF09083.5 gi|385803929|ref|YP_005840329.1| - 0.092 12.2 0.5 10 5.6 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1923) Prok-RING_1 PF14446.1 gi|385803930|ref|YP_005840330.1| - 0.71 9.6 6.0 1 9.1 4.1 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Thioredox_DsbH PF03190.10 gi|385803931|ref|YP_005840331.1| - 2e-72 242.2 0.0 3.2e-72 241.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|385803931|ref|YP_005840331.1| - 1.8e-10 40.6 0.0 4.2e-10 39.5 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.6 gi|385803931|ref|YP_005840331.1| - 8e-05 21.8 0.1 0.0067 15.4 0.0 2.4 2 0 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) C5-epim_C PF06662.8 gi|385803931|ref|YP_005840331.1| - 0.012 14.8 0.1 0.74 9.0 0.0 2.9 2 1 1 3 3 3 0 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_88 PF07470.8 gi|385803931|ref|YP_005840331.1| - 0.02 13.9 0.2 0.24 10.4 0.0 2.4 1 1 0 2 2 2 0 Glycosyl Hydrolase Family 88 Thioredoxin_2 PF13098.1 gi|385803931|ref|YP_005840331.1| - 0.022 14.9 0.0 0.056 13.6 0.0 1.6 1 0 0 1 1 1 0 Thioredoxin-like domain GARS_A PF01071.14 gi|385803932|ref|YP_005840332.1| - 3.4e-52 176.8 0.0 4.7e-52 176.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|385803932|ref|YP_005840332.1| - 5.2e-24 84.6 0.1 1.1e-23 83.5 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|385803932|ref|YP_005840332.1| - 4e-20 71.7 1.3 1.1e-19 70.3 0.3 2.2 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|385803932|ref|YP_005840332.1| - 4e-20 72.3 0.0 9.3e-20 71.1 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|385803932|ref|YP_005840332.1| - 2.1e-11 43.1 0.0 1.4e-10 40.4 0.0 2.3 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|385803932|ref|YP_005840332.1| - 1.1e-06 28.6 0.0 2.6e-06 27.3 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain Hexapep PF00132.19 gi|385803933|ref|YP_005840333.1| - 4.8e-09 35.3 3.4 1.9e-06 27.0 0.1 3.1 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|385803933|ref|YP_005840333.1| - 2.5e-07 30.1 0.6 0.00011 21.6 0.0 2.7 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase MS_channel PF00924.13 gi|385803934|ref|YP_005840334.1| - 2.9e-15 56.1 2.4 2.9e-15 56.1 1.7 2.1 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|385803934|ref|YP_005840334.1| - 3.1e-05 23.5 0.0 3.1e-05 23.5 0.0 3.3 4 0 0 4 4 4 2 Conserved TM helix DUF373 PF04123.8 gi|385803934|ref|YP_005840334.1| - 3.9 6.3 16.7 5.5 5.8 11.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DisA_N PF02457.11 gi|385803935|ref|YP_005840335.1| - 6.2e-25 86.7 0.0 9.7e-25 86.0 0.0 1.3 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding TFIIB PF00382.14 gi|385803936|ref|YP_005840336.1| - 1.8e-05 24.4 0.3 2.8e-05 23.8 0.2 1.4 1 1 0 1 1 1 1 Transcription factor TFIIB repeat DUF4608 PF15381.1 gi|385803936|ref|YP_005840336.1| - 0.017 15.2 0.1 0.024 14.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4608) CTP_transf_2 PF01467.21 gi|385803937|ref|YP_005840337.1| - 6.2e-12 45.8 0.1 4.5e-10 39.8 0.1 2.1 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|385803937|ref|YP_005840337.1| - 0.00015 21.4 0.0 0.011 15.3 0.0 2.2 2 0 0 2 2 2 2 FAD synthetase GCS2 PF04107.8 gi|385803938|ref|YP_005840338.1| - 1.1e-72 244.6 0.4 1.2e-72 244.4 0.3 1.0 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Amidoligase_2 PF12224.3 gi|385803938|ref|YP_005840338.1| - 0.018 14.6 0.7 0.32 10.5 0.2 2.7 2 1 0 2 2 2 0 Putative amidoligase enzyme Fibrillarin PF01269.12 gi|385803939|ref|YP_005840339.1| - 2.4e-50 170.6 0.0 2.8e-50 170.3 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin Nop PF01798.13 gi|385803940|ref|YP_005840340.1| - 1.2e-42 144.7 0.1 1.7e-42 144.2 0.1 1.2 1 0 0 1 1 1 1 Putative snoRNA binding domain MutS_III PF05192.13 gi|385803940|ref|YP_005840340.1| - 0.013 15.2 0.1 0.017 14.9 0.0 1.3 1 1 0 1 1 1 0 MutS domain III TFIIB PF00382.14 gi|385803942|ref|YP_005840342.1| - 3.5e-42 142.0 0.6 1.5e-20 72.7 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|385803942|ref|YP_005840342.1| - 9e-18 63.3 1.4 2e-17 62.2 1.0 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|385803942|ref|YP_005840342.1| - 0.0089 15.3 1.8 0.063 12.6 0.0 2.9 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|385803942|ref|YP_005840342.1| - 0.013 14.8 0.1 0.026 13.8 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|385803942|ref|YP_005840342.1| - 0.027 14.1 0.1 0.06 13.0 0.0 1.6 1 0 0 1 1 1 0 HTH domain Rubredoxin PF00301.15 gi|385803942|ref|YP_005840342.1| - 0.044 13.6 0.1 7.5 6.5 0.0 2.6 2 0 0 2 2 2 0 Rubredoxin HTH_AsnC-type PF13404.1 gi|385803942|ref|YP_005840342.1| - 0.045 13.2 0.0 0.29 10.7 0.0 2.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|385803942|ref|YP_005840342.1| - 0.059 13.0 1.3 0.12 12.0 0.2 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Cyclin_C PF02984.14 gi|385803942|ref|YP_005840342.1| - 0.11 12.4 0.0 1.8 8.5 0.0 2.4 2 0 0 2 2 2 0 Cyclin, C-terminal domain DZR PF12773.2 gi|385803942|ref|YP_005840342.1| - 0.13 12.1 0.6 0.23 11.3 0.4 1.4 1 0 0 1 1 1 0 Double zinc ribbon UreF PF01730.11 gi|385803942|ref|YP_005840342.1| - 0.15 12.1 4.0 10 6.2 0.1 2.9 2 1 1 3 3 3 0 UreF A2L_zn_ribbon PF08792.5 gi|385803942|ref|YP_005840342.1| - 0.2 11.1 0.6 0.37 10.3 0.4 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|385803942|ref|YP_005840342.1| - 0.28 10.8 1.6 0.57 9.8 1.1 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain UPF0058 PF01893.11 gi|385803944|ref|YP_005840344.1| - 5.2e-20 71.3 0.0 5.9e-20 71.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 DUF555 PF04475.7 gi|385803945|ref|YP_005840345.1| - 8.9e-39 131.6 0.1 1.1e-38 131.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) OGG_N PF07934.7 gi|385803946|ref|YP_005840346.1| - 2e-20 72.8 0.0 3.6e-20 72.0 0.0 1.4 1 0 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.20 gi|385803946|ref|YP_005840346.1| - 2.7e-10 40.4 0.0 4e-10 39.9 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein Glyco_hydro_77 PF02446.12 gi|385803947|ref|YP_005840347.1| - 5.9e-119 397.8 0.2 5.1e-97 325.4 1.5 2.0 2 0 0 2 2 2 2 4-alpha-glucanotransferase tRNA-synt_2b PF00587.20 gi|385803948|ref|YP_005840348.1| - 6.5e-40 136.5 0.0 1.2e-39 135.6 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|385803948|ref|YP_005840348.1| - 1.4e-19 69.7 0.8 4.1e-19 68.2 0.1 2.2 3 0 0 3 3 3 1 Anticodon binding domain TGS PF02824.16 gi|385803948|ref|YP_005840348.1| - 1.2e-12 47.4 0.2 2.8e-12 46.2 0.1 1.7 1 0 0 1 1 1 1 TGS domain tRNA_SAD PF07973.9 gi|385803948|ref|YP_005840348.1| - 1.9e-11 43.6 0.0 3.6e-11 42.7 0.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain OrfB_IS605 PF01385.14 gi|385803949|ref|YP_005840349.1| - 6.5e-48 163.0 0.0 8.8e-48 162.6 0.0 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385803949|ref|YP_005840349.1| - 8.9e-18 63.7 2.4 8.9e-18 63.7 1.6 2.4 2 0 0 2 2 2 1 Putative transposase DNA-binding domain C1_2 PF03107.11 gi|385803949|ref|YP_005840349.1| - 0.025 14.6 3.8 0.06 13.4 2.6 1.6 1 0 0 1 1 1 0 C1 domain DUF3791 PF12668.2 gi|385803949|ref|YP_005840349.1| - 0.08 12.5 0.1 0.18 11.4 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3791) C1_3 PF07649.7 gi|385803949|ref|YP_005840349.1| - 0.19 11.8 2.6 0.61 10.1 1.8 1.9 1 0 0 1 1 1 0 C1-like domain RRN7 PF11781.3 gi|385803949|ref|YP_005840349.1| - 3.7 7.1 8.6 0.71 9.4 3.3 1.9 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 NAD_synthase PF02540.12 gi|385803950|ref|YP_005840350.1| - 7.6e-64 214.9 0.0 1.1e-63 214.4 0.0 1.1 1 0 0 1 1 1 1 NAD synthase CN_hydrolase PF00795.17 gi|385803950|ref|YP_005840350.1| - 1.3e-13 50.6 0.0 2.6e-13 49.7 0.0 1.5 2 0 0 2 2 2 1 Carbon-nitrogen hydrolase tRNA_Me_trans PF03054.11 gi|385803950|ref|YP_005840350.1| - 4.5e-08 32.0 0.0 5e-06 25.3 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|385803950|ref|YP_005840350.1| - 1.5e-06 27.9 0.0 2.4e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|385803950|ref|YP_005840350.1| - 0.0071 15.6 0.0 0.025 13.8 0.0 1.8 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC TrkA_N PF02254.13 gi|385803951|ref|YP_005840351.1| - 1.6e-21 76.4 2.6 1.6e-21 76.4 1.8 2.2 2 0 0 2 2 2 1 TrkA-N domain DHH PF01368.15 gi|385803951|ref|YP_005840351.1| - 1.3e-12 47.6 0.7 4.2e-12 45.9 0.2 2.0 2 0 0 2 2 2 1 DHH family F420_oxidored PF03807.12 gi|385803951|ref|YP_005840351.1| - 3e-07 30.7 2.5 4.6e-07 30.1 0.3 2.3 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|385803951|ref|YP_005840351.1| - 4.9e-07 29.9 3.2 7.1e-07 29.3 1.4 1.8 1 1 0 1 1 1 1 NADH(P)-binding ApbA PF02558.11 gi|385803951|ref|YP_005840351.1| - 2e-06 27.2 0.0 4.7e-06 26.1 0.0 1.7 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DHHA1 PF02272.14 gi|385803951|ref|YP_005840351.1| - 5.1e-06 26.0 0.0 3e-05 23.6 0.0 2.2 2 0 0 2 2 2 1 DHHA1 domain Saccharop_dh PF03435.13 gi|385803951|ref|YP_005840351.1| - 5.8e-06 25.5 0.6 9.8e-06 24.7 0.4 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|385803951|ref|YP_005840351.1| - 3.2e-05 23.3 0.1 8.3e-05 22.0 0.1 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.1 gi|385803951|ref|YP_005840351.1| - 6.6e-05 23.1 0.7 0.00022 21.4 0.5 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_2 PF03446.10 gi|385803951|ref|YP_005840351.1| - 0.00012 22.0 0.0 0.00022 21.0 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|385803951|ref|YP_005840351.1| - 0.00021 20.6 0.4 0.00041 19.7 0.3 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_Gly3P_dh_N PF01210.18 gi|385803951|ref|YP_005840351.1| - 0.00039 20.1 0.0 0.00098 18.8 0.0 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ADH_zinc_N PF00107.21 gi|385803951|ref|YP_005840351.1| - 0.0013 18.2 0.2 0.1 12.1 0.1 2.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase 3HCDH_N PF02737.13 gi|385803951|ref|YP_005840351.1| - 0.0034 17.0 1.9 0.0035 17.0 0.2 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain adh_short PF00106.20 gi|385803951|ref|YP_005840351.1| - 0.0038 17.1 7.7 0.016 15.1 0.9 3.1 2 1 1 3 3 3 2 short chain dehydrogenase DAO PF01266.19 gi|385803951|ref|YP_005840351.1| - 0.0056 15.6 0.0 0.011 14.7 0.0 1.6 1 0 0 1 1 1 1 FAD dependent oxidoreductase ThiF PF00899.16 gi|385803951|ref|YP_005840351.1| - 0.0086 15.8 3.8 0.0094 15.7 0.9 2.3 2 1 0 2 2 2 1 ThiF family XdhC_C PF13478.1 gi|385803951|ref|YP_005840351.1| - 0.021 15.1 1.0 0.11 12.7 0.7 2.2 1 1 0 1 1 1 0 XdhC Rossmann domain 2-Hacid_dh_C PF02826.14 gi|385803951|ref|YP_005840351.1| - 0.025 13.7 0.1 0.18 10.9 0.0 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|385803951|ref|YP_005840351.1| - 0.057 13.4 0.0 0.14 12.2 0.0 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_C PF03720.10 gi|385803951|ref|YP_005840351.1| - 0.12 12.5 4.9 1.4 9.1 0.7 2.7 1 1 2 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KR PF08659.5 gi|385803951|ref|YP_005840351.1| - 0.15 11.7 2.8 0.29 10.7 0.7 2.2 1 1 2 3 3 3 0 KR domain PRC PF05239.11 gi|385803952|ref|YP_005840352.1| - 2.5e-09 36.8 1.8 3.8e-09 36.2 1.2 1.3 1 0 0 1 1 1 1 PRC-barrel domain DUF3315 PF11776.3 gi|385803952|ref|YP_005840352.1| - 0.059 12.8 0.5 0.11 11.9 0.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3315) zf-FCS PF06467.9 gi|385803954|ref|YP_005840354.1| - 0.54 9.9 3.2 8.2 6.1 2.2 2.3 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif AdoMet_Synthase PF01941.14 gi|385803955|ref|YP_005840355.1| - 8e-178 590.9 7.9 9.1e-178 590.7 5.5 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.15 gi|385803955|ref|YP_005840355.1| - 0.076 13.2 0.2 0.31 11.2 0.0 2.1 2 0 0 2 2 2 0 S-adenosylmethionine synthetase, N-terminal domain CYTH PF01928.16 gi|385803956|ref|YP_005840356.1| - 3.6e-38 131.1 2.6 4.1e-38 130.9 1.8 1.0 1 0 0 1 1 1 1 CYTH domain CAP_assoc_N PF14504.1 gi|385803956|ref|YP_005840356.1| - 0.043 13.5 0.1 0.14 11.8 0.0 1.8 1 1 0 2 2 2 0 CAP-associated N-terminal FKBP_C PF00254.23 gi|385803957|ref|YP_005840357.1| - 1.8e-08 34.2 0.0 4.8e-08 32.9 0.0 1.7 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase CbiA PF01656.18 gi|385803958|ref|YP_005840358.1| - 1.4e-19 70.3 0.0 2.1e-19 69.7 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.4 gi|385803958|ref|YP_005840358.1| - 5.7e-05 22.9 0.3 0.0001 22.0 0.2 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_26 PF13500.1 gi|385803958|ref|YP_005840358.1| - 0.00013 21.5 0.1 0.21 11.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_31 PF13614.1 gi|385803958|ref|YP_005840358.1| - 0.0075 16.2 0.0 0.05 13.5 0.0 2.1 1 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|385803958|ref|YP_005840358.1| - 0.07 12.2 0.0 0.15 11.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_25 PF13481.1 gi|385803958|ref|YP_005840358.1| - 0.11 11.8 0.2 0.61 9.4 0.1 2.1 2 0 0 2 2 2 0 AAA domain Fer4_NifH PF00142.13 gi|385803958|ref|YP_005840358.1| - 0.32 10.1 1.2 12 5.0 0.2 2.4 3 0 0 3 3 3 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|385803958|ref|YP_005840358.1| - 2.8 6.9 4.1 2 7.3 1.4 1.7 2 0 0 2 2 2 0 Anion-transporting ATPase DUF964 PF06133.6 gi|385803959|ref|YP_005840359.1| - 5.5e-22 77.8 6.8 6.3e-22 77.6 4.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF964) Hanta_nucleocap PF00846.13 gi|385803959|ref|YP_005840359.1| - 0.0034 16.1 0.1 0.004 15.9 0.1 1.2 1 0 0 1 1 1 1 Hantavirus nucleocapsid protein DUF3080 PF11279.3 gi|385803959|ref|YP_005840359.1| - 0.013 14.6 2.4 0.015 14.4 1.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3080) SH3BP5 PF05276.9 gi|385803959|ref|YP_005840359.1| - 0.014 14.7 3.3 0.018 14.3 0.9 1.8 1 1 1 2 2 2 0 SH3 domain-binding protein 5 (SH3BP5) NPV_P10 PF05531.7 gi|385803959|ref|YP_005840359.1| - 0.045 13.9 2.0 0.08 13.2 0.3 2.1 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF641 PF04859.7 gi|385803959|ref|YP_005840359.1| - 0.061 13.0 2.8 0.084 12.6 2.0 1.1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) Mu-like_Pro PF10123.4 gi|385803959|ref|YP_005840359.1| - 0.097 12.1 7.6 0.12 11.8 5.3 1.0 1 0 0 1 1 1 0 Mu-like prophage I protein MRP-S27 PF10037.4 gi|385803959|ref|YP_005840359.1| - 0.099 11.5 2.0 0.11 11.3 1.4 1.1 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S27 Syntaxin_2 PF14523.1 gi|385803959|ref|YP_005840359.1| - 0.14 12.2 1.0 0.28 11.2 0.7 1.7 1 1 0 1 1 1 0 Syntaxin-like protein Syntaxin-6_N PF09177.6 gi|385803959|ref|YP_005840359.1| - 0.22 11.9 3.2 1.4 9.3 1.5 2.3 1 1 1 2 2 2 0 Syntaxin 6, N-terminal OmpH PF03938.9 gi|385803959|ref|YP_005840359.1| - 0.63 9.9 8.1 0.85 9.5 5.6 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Nif11 PF07862.6 gi|385803959|ref|YP_005840359.1| - 0.67 9.9 3.4 0.5 10.3 0.2 2.3 2 1 0 2 2 2 0 Nitrogen fixation protein of unknown function Diphthamide_syn PF01866.12 gi|385803961|ref|YP_005840361.1| - 3.8e-93 312.1 0.0 4.4e-93 311.8 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Lactamase_B_2 PF12706.2 gi|385803962|ref|YP_005840362.1| - 5.6e-19 68.4 3.2 7e-19 68.1 2.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|385803962|ref|YP_005840362.1| - 6e-13 48.8 0.4 9.2e-13 48.2 0.3 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|385803962|ref|YP_005840362.1| - 5.5e-05 22.8 13.6 0.00024 20.8 9.5 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily HisG PF01634.13 gi|385803963|ref|YP_005840363.1| - 0.005 16.4 0.1 0.011 15.3 0.1 1.7 1 1 0 1 1 1 1 ATP phosphoribosyltransferase PhoU PF01895.14 gi|385803964|ref|YP_005840364.1| - 2.2e-19 69.6 9.6 8.2e-15 55.0 3.1 2.5 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|385803964|ref|YP_005840364.1| - 1.4e-07 31.0 0.0 2.9e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PhoU_div PF01865.11 gi|385803964|ref|YP_005840364.1| - 0.013 14.6 1.6 0.023 13.8 1.1 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF47 Amidase PF01425.16 gi|385803964|ref|YP_005840364.1| - 0.037 12.8 0.2 0.047 12.5 0.2 1.1 1 0 0 1 1 1 0 Amidase Phage_rep_org_N PF09681.5 gi|385803964|ref|YP_005840364.1| - 0.042 13.4 0.0 0.1 12.1 0.0 1.6 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) PhoU PF01895.14 gi|385803965|ref|YP_005840365.1| - 3e-06 27.5 0.1 0.0012 19.2 0.0 2.9 3 0 0 3 3 3 1 PhoU domain HTH_24 PF13412.1 gi|385803965|ref|YP_005840365.1| - 0.0014 17.9 0.0 0.0027 17.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|385803965|ref|YP_005840365.1| - 0.0019 17.9 0.0 0.0055 16.4 0.0 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|385803965|ref|YP_005840365.1| - 0.01 15.4 0.0 0.032 13.9 0.0 1.8 1 0 0 1 1 1 0 MarR family CBM_X PF06204.6 gi|385803965|ref|YP_005840365.1| - 0.016 14.6 0.0 0.043 13.2 0.0 1.7 1 0 0 1 1 1 0 Putative carbohydrate binding domain Rrf2 PF02082.15 gi|385803965|ref|YP_005840365.1| - 0.054 13.6 0.0 0.17 12.0 0.0 1.9 1 0 0 1 1 1 0 Transcriptional regulator DMAP_binding PF06464.6 gi|385803965|ref|YP_005840365.1| - 0.096 13.2 0.7 0.2 12.2 0.5 1.5 1 0 0 1 1 1 0 DMAP1-binding Domain DUF515 PF04415.7 gi|385803965|ref|YP_005840365.1| - 0.5 8.5 5.3 0.71 8.0 3.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF515) Hexapep PF00132.19 gi|385803966|ref|YP_005840366.1| - 5.7e-14 50.8 3.2 2.3e-11 42.6 3.5 2.8 2 1 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|385803966|ref|YP_005840366.1| - 7e-10 38.2 1.8 1.2e-09 37.5 1.2 1.4 1 0 0 1 1 1 1 Hexapeptide repeat of succinyl-transferase ABC_tran PF00005.22 gi|385803968|ref|YP_005840368.1| - 1.6e-31 109.4 0.2 2.6e-31 108.7 0.2 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385803968|ref|YP_005840368.1| - 1.3e-08 35.1 0.0 4.2e-06 26.9 0.0 2.2 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|385803968|ref|YP_005840368.1| - 1e-05 24.7 0.1 2.4e-05 23.5 0.1 1.7 1 1 0 1 1 1 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|385803968|ref|YP_005840368.1| - 7.8e-05 22.0 0.2 0.003 16.8 0.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|385803968|ref|YP_005840368.1| - 8e-05 21.8 0.0 0.23 10.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|385803968|ref|YP_005840368.1| - 0.00036 20.0 0.0 0.00079 18.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|385803968|ref|YP_005840368.1| - 0.00064 20.1 0.2 0.02 15.2 0.0 2.1 1 1 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|385803968|ref|YP_005840368.1| - 0.0027 17.3 0.4 0.01 15.4 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|385803968|ref|YP_005840368.1| - 0.0029 17.6 1.6 0.0092 15.9 1.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|385803968|ref|YP_005840368.1| - 0.0031 17.6 0.2 0.0066 16.5 0.1 1.6 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|385803968|ref|YP_005840368.1| - 0.0065 16.3 1.1 0.097 12.5 0.8 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit G-alpha PF00503.15 gi|385803968|ref|YP_005840368.1| - 0.017 13.8 0.0 0.018 13.7 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit Oxidored_FMN PF00724.15 gi|385803968|ref|YP_005840368.1| - 0.018 14.0 0.0 0.027 13.4 0.0 1.2 1 0 0 1 1 1 0 NADH:flavin oxidoreductase / NADH oxidase family MMR_HSR1 PF01926.18 gi|385803968|ref|YP_005840368.1| - 0.02 14.8 0.1 3.9 7.4 0.0 2.4 2 0 0 2 2 2 0 50S ribosome-binding GTPase Miro PF08477.8 gi|385803968|ref|YP_005840368.1| - 0.13 12.8 0.4 0.71 10.3 0.0 2.2 2 1 0 2 2 2 0 Miro-like protein Phosphonate-bd PF12974.2 gi|385803969|ref|YP_005840369.1| - 8.3e-37 126.8 0.1 1.1e-36 126.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.6 gi|385803969|ref|YP_005840369.1| - 0.0081 15.7 0.0 0.015 14.8 0.0 1.5 1 0 0 1 1 1 1 NMT1/THI5 like PhnG PF06754.7 gi|385803970|ref|YP_005840370.1| - 4.7e-15 55.4 0.2 5.6e-15 55.2 0.1 1.0 1 0 0 1 1 1 1 Phosphonate metabolism protein PhnG PhnI PF05861.7 gi|385803970|ref|YP_005840370.1| - 0.011 14.2 0.1 0.019 13.5 0.1 1.4 1 1 0 1 1 1 0 Bacterial phosphonate metabolism protein (PhnI) PhnH PF05845.7 gi|385803971|ref|YP_005840371.1| - 1.8e-23 83.0 0.1 2.4e-23 82.6 0.1 1.1 1 0 0 1 1 1 1 Bacterial phosphonate metabolism protein (PhnH) PhnI PF05861.7 gi|385803972|ref|YP_005840372.1| - 2.4e-137 457.2 0.0 2.8e-137 457.0 0.0 1.0 1 0 0 1 1 1 1 Bacterial phosphonate metabolism protein (PhnI) PhnJ PF06007.6 gi|385803973|ref|YP_005840373.1| - 1.8e-134 446.8 0.0 2.2e-134 446.5 0.0 1.1 1 0 0 1 1 1 1 Phosphonate metabolism protein PhnJ ABC_tran PF00005.22 gi|385803974|ref|YP_005840374.1| - 1.7e-26 93.1 0.0 2.4e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385803974|ref|YP_005840374.1| - 1.1e-13 51.7 0.0 9.6e-12 45.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|385803974|ref|YP_005840374.1| - 4.5e-06 26.2 0.9 1.3e-05 24.6 0.6 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|385803974|ref|YP_005840374.1| - 4.6e-06 26.8 0.3 5.9e-05 23.2 0.2 2.1 1 1 0 1 1 1 1 AAA domain oligo_HPY PF08352.7 gi|385803974|ref|YP_005840374.1| - 9.6e-05 22.6 0.0 0.00029 21.1 0.0 1.8 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.14 gi|385803974|ref|YP_005840374.1| - 0.00093 18.4 0.7 0.67 9.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|385803974|ref|YP_005840374.1| - 0.001 18.5 0.3 0.11 11.9 0.0 2.2 1 1 1 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|385803974|ref|YP_005840374.1| - 0.0028 17.6 0.2 0.0052 16.8 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|385803974|ref|YP_005840374.1| - 0.0044 17.8 1.3 0.014 16.2 0.9 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|385803974|ref|YP_005840374.1| - 0.0054 15.8 0.0 0.28 10.1 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain SbcCD_C PF13558.1 gi|385803974|ref|YP_005840374.1| - 0.0086 15.9 0.0 0.033 14.0 0.0 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.1 gi|385803974|ref|YP_005840374.1| - 0.014 15.6 0.3 0.042 14.1 0.2 2.1 1 1 0 1 1 1 0 AAA domain Chitin_bind_4 PF00379.18 gi|385803974|ref|YP_005840374.1| - 0.016 15.4 0.1 0.032 14.5 0.1 1.5 1 0 0 1 1 1 0 Insect cuticle protein AAA_29 PF13555.1 gi|385803974|ref|YP_005840374.1| - 0.021 14.3 0.1 0.049 13.1 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|385803974|ref|YP_005840374.1| - 0.03 13.5 0.0 0.046 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Miro PF08477.8 gi|385803974|ref|YP_005840374.1| - 0.034 14.6 0.0 0.092 13.2 0.0 1.7 2 0 0 2 2 1 0 Miro-like protein AAA_33 PF13671.1 gi|385803974|ref|YP_005840374.1| - 0.039 13.8 0.8 0.48 10.3 0.6 2.3 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|385803974|ref|YP_005840374.1| - 0.039 14.1 0.3 1.2 9.3 0.2 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|385803974|ref|YP_005840374.1| - 0.053 12.9 0.2 2.8 7.3 0.0 2.3 2 1 0 2 2 2 0 IstB-like ATP binding protein Propep_M14 PF02244.11 gi|385803974|ref|YP_005840374.1| - 0.072 12.7 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Carboxypeptidase activation peptide DUF87 PF01935.12 gi|385803974|ref|YP_005840374.1| - 0.09 12.5 0.8 0.33 10.7 0.1 2.1 2 1 0 2 2 2 0 Domain of unknown function DUF87 Zeta_toxin PF06414.7 gi|385803974|ref|YP_005840374.1| - 0.093 11.8 0.2 0.61 9.1 0.0 2.0 2 0 0 2 2 2 0 Zeta toxin MMR_HSR1 PF01926.18 gi|385803974|ref|YP_005840374.1| - 0.14 12.1 0.0 0.33 10.9 0.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC_tran PF00005.22 gi|385803975|ref|YP_005840375.1| - 3.6e-28 98.5 0.0 1.1e-27 96.9 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|385803975|ref|YP_005840375.1| - 3.9e-10 40.1 0.0 0.00054 20.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|385803975|ref|YP_005840375.1| - 2.6e-06 26.8 0.1 0.0011 18.2 0.0 3.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|385803975|ref|YP_005840375.1| - 4.7e-06 26.7 0.1 9.3e-06 25.7 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|385803975|ref|YP_005840375.1| - 6.9e-05 22.4 0.0 0.00014 21.4 0.0 1.4 1 1 0 1 1 1 1 AAA-like domain SbcCD_C PF13558.1 gi|385803975|ref|YP_005840375.1| - 0.00012 21.9 0.3 0.0022 17.8 0.1 3.0 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|385803975|ref|YP_005840375.1| - 0.00056 19.0 0.0 0.03 13.3 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|385803975|ref|YP_005840375.1| - 0.00096 19.3 0.3 0.014 15.5 0.2 2.6 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|385803975|ref|YP_005840375.1| - 0.0011 18.2 0.0 0.0018 17.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|385803975|ref|YP_005840375.1| - 0.0018 18.2 0.0 0.015 15.2 0.0 2.4 3 1 0 3 3 3 1 AAA domain Miro PF08477.8 gi|385803975|ref|YP_005840375.1| - 0.01 16.3 0.0 0.03 14.8 0.0 1.8 1 0 0 1 1 1 0 Miro-like protein Gtr1_RagA PF04670.7 gi|385803975|ref|YP_005840375.1| - 0.011 14.9 0.0 0.02 14.0 0.0 1.4 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region AAA_29 PF13555.1 gi|385803975|ref|YP_005840375.1| - 0.012 15.1 0.0 0.024 14.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|385803975|ref|YP_005840375.1| - 0.017 15.0 0.0 0.078 12.8 0.0 2.1 1 1 1 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|385803975|ref|YP_005840375.1| - 0.033 13.7 0.1 0.52 9.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|385803975|ref|YP_005840375.1| - 0.069 13.4 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|385803975|ref|YP_005840375.1| - 0.082 12.8 0.1 0.27 11.1 0.0 2.0 2 1 1 3 3 2 0 50S ribosome-binding GTPase Amidohydro_4 PF13147.1 gi|385803976|ref|YP_005840376.1| - 9e-22 78.3 9.3 4.3e-21 76.1 6.5 1.9 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|385803976|ref|YP_005840376.1| - 8.7e-12 44.6 0.2 8.7e-12 44.6 0.1 2.9 2 1 1 3 3 3 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|385803976|ref|YP_005840376.1| - 8.8e-07 28.8 5.0 2.8e-06 27.2 1.2 2.6 2 1 0 2 2 2 1 Amidohydrolase family Amidohydro_3 PF07969.6 gi|385803976|ref|YP_005840376.1| - 1.7e-05 24.2 6.6 2.5e-05 23.6 0.8 2.7 1 1 0 2 2 2 1 Amidohydrolase family Urease_alpha PF00449.15 gi|385803976|ref|YP_005840376.1| - 0.028 14.5 2.4 0.48 10.5 0.6 2.3 2 0 0 2 2 2 0 Urease alpha-subunit, N-terminal domain ArdA PF07275.6 gi|385803976|ref|YP_005840376.1| - 0.075 13.2 0.1 0.14 12.4 0.1 1.4 1 0 0 1 1 1 0 Antirestriction protein (ArdA) AP_endonuc_2 PF01261.19 gi|385803977|ref|YP_005840377.1| - 3.9e-27 94.9 0.3 4.8e-27 94.6 0.2 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF318 PF03773.8 gi|385803978|ref|YP_005840378.1| - 4.3e-60 203.2 13.8 5e-60 203.0 9.5 1.0 1 0 0 1 1 1 1 Predicted permease HTH_20 PF12840.2 gi|385803979|ref|YP_005840379.1| - 7.7e-15 54.4 0.4 1.3e-14 53.6 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|385803979|ref|YP_005840379.1| - 7.6e-12 44.7 0.1 1.4e-11 43.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|385803979|ref|YP_005840379.1| - 0.00034 20.2 0.0 0.00069 19.2 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|385803979|ref|YP_005840379.1| - 0.0046 17.2 0.2 0.13 12.5 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain DUF4123 PF13503.1 gi|385803979|ref|YP_005840379.1| - 0.0056 16.6 0.0 0.0083 16.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4123) HTH_24 PF13412.1 gi|385803979|ref|YP_005840379.1| - 0.051 12.9 0.1 0.21 10.9 0.0 2.2 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.11 gi|385803979|ref|YP_005840379.1| - 0.067 13.2 0.1 0.19 11.8 0.0 1.7 1 1 0 2 2 2 0 Penicillinase repressor DUF742 PF05331.6 gi|385803979|ref|YP_005840379.1| - 0.07 12.7 0.1 0.085 12.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF742) TFIIE_alpha PF02002.12 gi|385803979|ref|YP_005840379.1| - 0.074 12.5 0.2 0.54 9.7 0.0 2.0 1 1 1 2 2 2 0 TFIIE alpha subunit NOC3p PF07540.6 gi|385803979|ref|YP_005840379.1| - 0.1 12.8 0.0 0.25 11.6 0.0 1.6 1 1 0 1 1 1 0 Nucleolar complex-associated protein Gluconate_2-dh3 PF13618.1 gi|385803979|ref|YP_005840379.1| - 0.12 12.5 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 Gluconate 2-dehydrogenase subunit 3 MgtE_N PF03448.12 gi|385803979|ref|YP_005840379.1| - 0.18 12.1 0.9 1.7 8.9 0.4 2.4 1 1 0 1 1 1 0 MgtE intracellular N domain Phage_integrase PF00589.17 gi|385803980|ref|YP_005840380.1| - 1.9e-14 53.6 0.0 4.3e-14 52.5 0.0 1.6 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|385803980|ref|YP_005840380.1| - 8.6e-07 29.2 0.9 4.3e-06 26.9 0.6 2.1 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|385803980|ref|YP_005840380.1| - 1.8e-06 27.9 4.2 0.00053 20.0 2.4 3.3 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Rrf2 PF02082.15 gi|385803981|ref|YP_005840381.1| - 0.0035 17.4 0.0 0.01 15.9 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator ELL PF10390.4 gi|385803981|ref|YP_005840381.1| - 0.01 15.0 0.3 0.012 14.8 0.2 1.1 1 0 0 1 1 1 0 RNA polymerase II elongation factor ELL FtsH_ext PF06480.10 gi|385803981|ref|YP_005840381.1| - 0.015 15.4 1.3 0.025 14.7 0.9 1.4 1 0 0 1 1 1 0 FtsH Extracellular Prismane PF03063.15 gi|385803981|ref|YP_005840381.1| - 0.082 11.2 1.5 0.29 9.4 1.0 1.8 1 1 0 1 1 1 0 Prismane/CO dehydrogenase family DUF3527 PF12043.3 gi|385803981|ref|YP_005840381.1| - 0.13 11.7 1.9 0.18 11.3 1.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3527) Iron_transport PF10634.4 gi|385803982|ref|YP_005840382.1| - 5.4e-05 23.1 0.0 0.0012 18.7 0.0 2.2 2 0 0 2 2 2 1 Fe2+ transport protein HTH_24 PF13412.1 gi|385803983|ref|YP_005840383.1| - 1.3e-15 56.4 0.2 5.8e-11 41.6 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|385803983|ref|YP_005840383.1| - 2.8e-14 52.6 0.8 2.5e-08 33.6 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.2 gi|385803983|ref|YP_005840383.1| - 7.9e-13 47.8 0.2 2.2e-07 30.4 0.0 2.2 2 0 0 2 2 2 2 MarR family HTH_AsnC-type PF13404.1 gi|385803983|ref|YP_005840383.1| - 2.4e-08 33.3 0.9 4.1e-05 23.0 0.0 2.9 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain HTH_5 PF01022.15 gi|385803983|ref|YP_005840383.1| - 4.5e-08 32.6 0.0 3.6e-07 29.7 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|385803983|ref|YP_005840383.1| - 1.8e-07 30.7 0.0 0.00025 20.6 0.0 2.2 2 0 0 2 2 2 2 MarR family HTH_10 PF04967.7 gi|385803983|ref|YP_005840383.1| - 1.3e-05 24.6 0.0 0.0055 16.2 0.0 3.0 3 0 0 3 3 3 1 HTH DNA binding domain TrmB PF01978.14 gi|385803983|ref|YP_005840383.1| - 3.7e-05 23.3 0.0 0.0031 17.1 0.0 2.5 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|385803983|ref|YP_005840383.1| - 0.00022 20.7 0.0 0.0014 18.1 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|385803983|ref|YP_005840383.1| - 0.00034 20.0 0.0 0.00074 18.9 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_34 PF13601.1 gi|385803983|ref|YP_005840383.1| - 0.00093 19.1 0.0 0.6 10.1 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain GerE PF00196.14 gi|385803983|ref|YP_005840383.1| - 0.0016 17.7 0.0 0.018 14.3 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family DUF2513 PF10711.4 gi|385803983|ref|YP_005840383.1| - 0.0016 18.4 0.0 0.3 11.1 0.0 2.7 2 1 1 3 3 3 1 Hypothetical protein (DUF2513) HTH_27 PF13463.1 gi|385803983|ref|YP_005840383.1| - 0.0016 18.7 0.0 0.079 13.2 0.0 2.4 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_38 PF13936.1 gi|385803983|ref|YP_005840383.1| - 0.0019 17.6 1.4 0.0068 15.9 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|385803983|ref|YP_005840383.1| - 0.0037 16.7 0.0 0.073 12.6 0.0 2.3 2 0 0 2 2 2 1 LexA DNA binding domain HTH_30 PF13556.1 gi|385803983|ref|YP_005840383.1| - 0.0039 16.7 0.1 0.013 15.0 0.0 2.0 2 0 0 2 2 1 1 PucR C-terminal helix-turn-helix domain HTH_23 PF13384.1 gi|385803983|ref|YP_005840383.1| - 0.0061 16.1 0.0 0.021 14.4 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|385803983|ref|YP_005840383.1| - 0.0097 15.5 0.1 0.037 13.6 0.0 2.0 3 0 0 3 3 2 1 HTH domain HTH_40 PF14493.1 gi|385803983|ref|YP_005840383.1| - 0.02 15.1 0.1 0.14 12.3 0.0 2.1 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|385803983|ref|YP_005840383.1| - 0.029 14.2 0.1 0.082 12.7 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase Fe_dep_repress PF01325.14 gi|385803983|ref|YP_005840383.1| - 0.034 14.0 0.0 0.17 11.8 0.0 2.0 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain DUF4423 PF14394.1 gi|385803983|ref|YP_005840383.1| - 0.034 13.6 0.0 0.21 11.0 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_DeoR PF08220.7 gi|385803983|ref|YP_005840383.1| - 0.037 13.5 0.0 0.099 12.2 0.0 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_29 PF13551.1 gi|385803983|ref|YP_005840383.1| - 0.044 13.9 0.7 2.6 8.2 0.0 2.2 1 1 1 2 2 2 0 Winged helix-turn helix HTH_28 PF13518.1 gi|385803983|ref|YP_005840383.1| - 0.045 13.7 0.0 0.13 12.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.7 gi|385803983|ref|YP_005840383.1| - 0.049 13.8 0.1 0.33 11.1 0.0 2.0 2 0 0 2 2 2 0 FaeA-like protein UTRA PF07702.8 gi|385803983|ref|YP_005840383.1| - 0.055 13.0 1.2 0.52 9.9 0.8 2.1 1 1 0 1 1 1 0 UTRA domain Terminase_5 PF06056.7 gi|385803983|ref|YP_005840383.1| - 0.082 12.4 0.0 0.2 11.2 0.0 1.6 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) CENP-B_N PF04218.8 gi|385803983|ref|YP_005840383.1| - 0.1 12.0 0.0 1.3 8.5 0.0 2.4 2 1 0 2 2 2 0 CENP-B N-terminal DNA-binding domain Sigma70_r4 PF04545.11 gi|385803983|ref|YP_005840383.1| - 0.11 11.8 0.9 0.34 10.2 0.0 2.4 2 2 0 2 2 2 0 Sigma-70, region 4 RP-C PF03428.8 gi|385803983|ref|YP_005840383.1| - 0.11 11.8 0.4 0.35 10.3 0.0 1.9 2 1 0 2 2 2 0 Replication protein C N-terminal domain HTH_8 PF02954.14 gi|385803983|ref|YP_005840383.1| - 0.19 11.3 0.7 1.9 8.1 0.0 2.7 3 0 0 3 3 3 0 Bacterial regulatory protein, Fis family PQQ_2 PF13360.1 gi|385803985|ref|YP_005840385.1| - 2.5e-17 63.1 12.1 3.9e-09 36.3 1.5 3.0 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|385803985|ref|YP_005840385.1| - 6e-14 50.7 2.7 0.00013 21.2 0.0 5.9 5 1 0 5 5 5 3 PQQ enzyme repeat FG-GAP PF01839.18 gi|385803985|ref|YP_005840385.1| - 1.4e-09 37.3 19.9 0.0016 18.0 0.0 5.9 6 0 0 6 6 6 4 FG-GAP repeat BBS2_Mid PF14783.1 gi|385803985|ref|YP_005840385.1| - 8.9e-08 31.8 0.2 0.00038 20.2 0.0 3.7 3 1 0 3 3 3 2 Ciliary BBSome complex subunit 2, middle region VCBS PF13517.1 gi|385803985|ref|YP_005840385.1| - 1.4e-07 31.7 21.9 0.00043 20.5 0.0 5.6 2 1 4 6 6 6 4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella PQQ_3 PF13570.1 gi|385803985|ref|YP_005840385.1| - 0.0014 18.8 28.4 0.25 11.6 0.1 7.8 7 3 1 8 8 8 3 PQQ-like domain PepSY_2 PF13670.1 gi|385803985|ref|YP_005840385.1| - 0.11 12.4 0.8 19 5.2 0.1 3.1 3 0 0 3 3 3 0 Peptidase propeptide and YPEB domain QueC PF06508.8 gi|385803986|ref|YP_005840386.1| - 0.14 11.3 0.0 0.25 10.6 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC TAT_signal PF10518.4 gi|385803988|ref|YP_005840388.1| - 0.046 13.7 0.1 0.15 12.0 0.1 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SnoaL_4 PF13577.1 gi|385803988|ref|YP_005840388.1| - 0.15 11.9 2.3 2.5 7.9 0.1 2.6 2 0 0 2 2 2 0 SnoaL-like domain HTH_24 PF13412.1 gi|385803989|ref|YP_005840389.1| - 4.6e-15 54.7 0.3 6.6e-15 54.2 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|385803989|ref|YP_005840389.1| - 1.1e-12 47.2 2.5 2.1e-12 46.3 1.8 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|385803989|ref|YP_005840389.1| - 2e-08 33.9 0.0 3.5e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|385803989|ref|YP_005840389.1| - 3.5e-07 29.7 0.0 7.1e-07 28.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|385803989|ref|YP_005840389.1| - 4.9e-06 26.0 0.0 9e-06 25.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|385803989|ref|YP_005840389.1| - 6.9e-06 25.6 0.1 1.1e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.15 gi|385803989|ref|YP_005840389.1| - 0.00011 22.2 0.0 0.00023 21.2 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator Sigma70_r4_2 PF08281.7 gi|385803989|ref|YP_005840389.1| - 0.00014 21.2 0.1 0.00025 20.4 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_27 PF13463.1 gi|385803989|ref|YP_005840389.1| - 0.00015 22.0 0.1 0.00038 20.7 0.0 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|385803989|ref|YP_005840389.1| - 0.00024 20.5 0.2 0.0052 16.2 0.0 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.15 gi|385803989|ref|YP_005840389.1| - 0.00077 19.0 0.0 0.0013 18.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|385803989|ref|YP_005840389.1| - 0.0013 18.6 0.0 0.0022 17.8 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.1 gi|385803989|ref|YP_005840389.1| - 0.0013 18.8 0.0 0.0019 18.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_CodY PF08222.6 gi|385803989|ref|YP_005840389.1| - 0.0016 17.6 0.3 0.0031 16.7 0.2 1.4 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|385803989|ref|YP_005840389.1| - 0.0022 17.1 0.3 0.0046 16.0 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 MarR PF01047.17 gi|385803989|ref|YP_005840389.1| - 0.0032 17.1 0.0 0.0052 16.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.1 gi|385803989|ref|YP_005840389.1| - 0.0045 16.5 0.3 0.0083 15.6 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|385803989|ref|YP_005840389.1| - 0.0055 16.3 0.0 0.01 15.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|385803989|ref|YP_005840389.1| - 0.0083 15.7 0.1 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|385803989|ref|YP_005840389.1| - 0.014 15.3 0.0 0.027 14.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|385803989|ref|YP_005840389.1| - 0.024 14.0 0.0 0.043 13.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_34 PF13601.1 gi|385803989|ref|YP_005840389.1| - 0.024 14.6 0.0 0.042 13.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|385803989|ref|YP_005840389.1| - 0.048 13.4 0.1 0.092 12.5 0.1 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain GntR PF00392.16 gi|385803989|ref|YP_005840389.1| - 0.1 12.0 0.0 0.25 10.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family RepL PF05732.6 gi|385803989|ref|YP_005840389.1| - 0.1 11.7 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_Mga PF08280.6 gi|385803989|ref|YP_005840389.1| - 0.11 12.3 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain RP-C PF03428.8 gi|385803989|ref|YP_005840389.1| - 0.11 11.9 0.1 0.27 10.6 0.0 1.6 1 1 1 2 2 2 0 Replication protein C N-terminal domain HTH_1 PF00126.22 gi|385803989|ref|YP_005840389.1| - 0.11 12.2 0.2 0.2 11.3 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF4423 PF14394.1 gi|385803989|ref|YP_005840389.1| - 0.12 11.9 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_10 PF04967.7 gi|385803989|ref|YP_005840389.1| - 0.12 11.9 0.1 0.22 11.1 0.1 1.3 1 0 0 1 1 1 0 HTH DNA binding domain HTH_29 PF13551.1 gi|385803989|ref|YP_005840389.1| - 0.13 12.4 0.0 0.19 11.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix Phage_pRha PF09669.5 gi|385803989|ref|YP_005840389.1| - 0.15 12.4 0.0 0.21 11.9 0.0 1.2 1 0 0 1 1 1 0 Phage regulatory protein Rha (Phage_pRha) Amidohydro_1 PF01979.15 gi|385803990|ref|YP_005840390.1| - 8.8e-22 78.1 3.0 3.8e-20 72.8 2.1 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|385803990|ref|YP_005840390.1| - 8.8e-08 32.4 10.1 5.3e-07 29.9 7.0 1.9 1 1 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|385803990|ref|YP_005840390.1| - 3.6e-07 29.3 0.1 5.2e-07 28.8 0.1 1.1 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_5 PF13594.1 gi|385803990|ref|YP_005840390.1| - 3.7e-05 23.4 0.0 8.2e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|385803990|ref|YP_005840390.1| - 0.076 12.2 9.7 0.17 11.0 2.7 2.8 1 1 0 2 2 2 0 Amidohydrolase family Oxidored_q1 PF00361.15 gi|385803991|ref|YP_005840391.1| - 2.9e-33 115.2 18.2 2.9e-33 115.2 12.6 2.9 2 1 1 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|385803991|ref|YP_005840391.1| - 6.3e-06 25.6 0.0 6.3e-06 25.6 0.0 3.1 2 1 1 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF4366 PF14283.1 gi|385803991|ref|YP_005840391.1| - 0.18 11.1 0.0 0.37 10.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) DUF2309 PF10070.4 gi|529167405|ref|YP_005840392.2| - 6.5e-258 857.9 0.0 7.7e-258 857.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2309) DUF159 PF02586.9 gi|385803993|ref|YP_005840393.1| - 6.8e-59 198.8 0.0 7.8e-59 198.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ACR, COG2135 RNase_H_2 PF13482.1 gi|385803994|ref|YP_005840394.1| - 8.3e-36 123.2 0.0 1.1e-35 122.9 0.0 1.1 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_A_exo1 PF01612.15 gi|385803994|ref|YP_005840394.1| - 0.00062 19.2 0.0 0.0013 18.2 0.0 1.6 1 1 0 1 1 1 1 3'-5' exonuclease DNA_pol_B_exo2 PF10108.4 gi|385803994|ref|YP_005840394.1| - 0.028 13.9 0.1 0.47 9.9 0.0 2.1 2 0 0 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Glycos_transf_2 PF00535.21 gi|385803995|ref|YP_005840395.1| - 1.1e-20 73.9 0.0 1.4e-20 73.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|385803995|ref|YP_005840395.1| - 1.2e-09 38.3 0.1 1.5e-09 38.0 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|385803995|ref|YP_005840395.1| - 0.004 16.4 0.0 0.0057 15.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 NTP_transf_3 PF12804.2 gi|385803995|ref|YP_005840395.1| - 0.019 15.0 0.1 0.035 14.1 0.1 1.5 1 1 1 2 2 2 0 MobA-like NTP transferase domain Bactofilin PF04519.8 gi|529167406|ref|YP_005840397.2| - 1e-10 41.5 5.5 6.8e-08 32.4 0.1 3.8 2 2 1 3 3 3 2 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|529167406|ref|YP_005840397.2| - 9.8e-07 28.0 8.4 0.035 13.6 0.0 6.1 4 2 1 6 6 6 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|529167406|ref|YP_005840397.2| - 0.001 18.5 8.2 0.18 11.3 0.1 4.2 3 1 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase DUF3494 PF11999.3 gi|529167406|ref|YP_005840397.2| - 0.0019 17.8 0.1 0.013 15.1 0.1 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF3494) MMR_HSR1_C PF08438.5 gi|385803998|ref|YP_005840398.1| - 5e-31 107.1 0.1 8.3e-31 106.4 0.1 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|385803998|ref|YP_005840398.1| - 3.3e-16 59.2 0.0 1e-15 57.7 0.0 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|385803998|ref|YP_005840398.1| - 1.9e-12 46.8 0.0 5.2e-12 45.4 0.0 1.7 2 0 0 2 2 2 1 TGS domain FeoB_N PF02421.13 gi|385803998|ref|YP_005840398.1| - 4.5e-10 39.0 0.1 6.3e-08 32.0 0.0 2.7 3 0 0 3 3 3 1 Ferrous iron transport protein B Miro PF08477.8 gi|385803998|ref|YP_005840398.1| - 0.031 14.7 0.0 1 9.8 0.0 2.6 2 1 0 2 2 2 0 Miro-like protein NOG1 PF06858.9 gi|385803998|ref|YP_005840398.1| - 0.15 11.9 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 Nucleolar GTP-binding protein 1 (NOG1) Aminotran_1_2 PF00155.16 gi|385803999|ref|YP_005840399.1| - 2e-61 207.9 0.0 2.2e-61 207.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|385803999|ref|YP_005840399.1| - 2.7e-13 49.7 0.2 4.1e-13 49.1 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|385803999|ref|YP_005840399.1| - 2.6e-10 39.9 0.0 4.2e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|385803999|ref|YP_005840399.1| - 2.2e-08 33.2 0.0 2.9e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|385803999|ref|YP_005840399.1| - 5.1e-07 28.3 0.0 7.1e-07 27.8 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme NMT1_2 PF13379.1 gi|385804000|ref|YP_005840400.1| - 2e-29 102.7 0.0 2.7e-29 102.3 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.6 gi|385804000|ref|YP_005840400.1| - 1.2e-05 25.0 0.0 6.2e-05 22.6 0.0 1.9 1 1 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|385804000|ref|YP_005840400.1| - 0.001 18.4 0.0 0.0015 17.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein DUF4621 PF15414.1 gi|385804000|ref|YP_005840400.1| - 0.03 13.0 0.1 0.051 12.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4621) TAT_signal PF10518.4 gi|385804000|ref|YP_005840400.1| - 0.039 13.9 1.9 0.13 12.3 1.3 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|385804001|ref|YP_005840401.1| - 1.4e-20 73.6 9.7 1.4e-20 73.6 6.7 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|385804002|ref|YP_005840402.1| - 2.8e-34 118.3 0.0 4.6e-34 117.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385804002|ref|YP_005840402.1| - 1.1e-06 28.8 0.0 0.0077 16.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|385804002|ref|YP_005840402.1| - 4.9e-06 26.6 0.0 7.5e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|385804002|ref|YP_005840402.1| - 7.6e-05 21.9 0.0 0.00013 21.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|385804002|ref|YP_005840402.1| - 0.00043 20.2 0.1 0.03 14.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|385804002|ref|YP_005840402.1| - 0.00057 20.0 0.3 0.0023 18.1 0.2 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|385804002|ref|YP_005840402.1| - 0.0022 17.4 0.0 0.0039 16.6 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_29 PF13555.1 gi|385804002|ref|YP_005840402.1| - 0.0033 16.8 0.0 0.0081 15.6 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain PduV-EutP PF10662.4 gi|385804002|ref|YP_005840402.1| - 0.0035 16.8 0.0 0.0097 15.4 0.0 1.7 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation DEAD PF00270.24 gi|385804002|ref|YP_005840402.1| - 0.0047 16.4 0.0 0.52 9.7 0.0 2.7 1 1 1 2 2 2 1 DEAD/DEAH box helicase AAA_5 PF07728.9 gi|385804002|ref|YP_005840402.1| - 0.0052 16.5 0.1 0.012 15.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.20 gi|385804002|ref|YP_005840402.1| - 0.0083 15.6 0.0 0.014 14.8 0.0 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_25 PF13481.1 gi|385804002|ref|YP_005840402.1| - 0.0093 15.3 0.5 0.059 12.7 0.0 2.3 2 1 1 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|385804002|ref|YP_005840402.1| - 0.011 15.8 0.1 0.031 14.4 0.1 1.8 2 0 0 2 2 1 0 AAA domain AAA_23 PF13476.1 gi|385804002|ref|YP_005840402.1| - 0.012 15.9 0.0 0.021 15.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|385804002|ref|YP_005840402.1| - 0.014 15.3 0.2 0.025 14.4 0.1 1.8 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|385804002|ref|YP_005840402.1| - 0.014 15.0 0.0 0.047 13.3 0.0 1.8 2 0 0 2 2 2 0 Archaeal ATPase AAA_18 PF13238.1 gi|385804002|ref|YP_005840402.1| - 0.015 15.5 0.1 0.14 12.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|385804002|ref|YP_005840402.1| - 0.016 14.1 0.0 0.032 13.1 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_17 PF13207.1 gi|385804002|ref|YP_005840402.1| - 0.016 16.0 0.1 0.039 14.7 0.1 1.7 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|385804002|ref|YP_005840402.1| - 0.016 14.7 0.0 0.089 12.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|385804002|ref|YP_005840402.1| - 0.019 14.7 0.6 0.18 11.5 0.1 2.6 2 0 0 2 2 2 0 Part of AAA domain NACHT PF05729.7 gi|385804002|ref|YP_005840402.1| - 0.021 14.4 0.0 0.041 13.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain UPF0079 PF02367.12 gi|385804002|ref|YP_005840402.1| - 0.029 14.0 0.0 0.054 13.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_14 PF13173.1 gi|385804002|ref|YP_005840402.1| - 0.031 14.1 0.1 0.32 10.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|385804002|ref|YP_005840402.1| - 0.095 12.6 0.1 0.3 11.0 0.0 2.2 2 1 0 2 2 2 0 50S ribosome-binding GTPase RuvB_N PF05496.7 gi|385804002|ref|YP_005840402.1| - 0.1 11.6 0.0 0.18 10.7 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_24 PF13479.1 gi|385804002|ref|YP_005840402.1| - 0.11 12.0 0.4 1.5 8.3 0.0 2.5 3 0 0 3 3 3 0 AAA domain Rad17 PF03215.10 gi|385804002|ref|YP_005840402.1| - 0.13 10.9 0.0 0.17 10.5 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein RNA_helicase PF00910.17 gi|385804002|ref|YP_005840402.1| - 0.14 12.3 0.0 0.29 11.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_15 PF13175.1 gi|385804002|ref|YP_005840402.1| - 0.15 11.0 0.0 2.6 6.9 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain ResIII PF04851.10 gi|385804004|ref|YP_005840404.1| - 1.1e-28 100.3 0.3 2.4e-26 92.6 0.0 3.1 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|385804004|ref|YP_005840404.1| - 2.7e-17 62.4 0.8 6.3e-17 61.2 0.2 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|385804004|ref|YP_005840404.1| - 4.1e-11 42.6 0.0 1.2e-10 41.1 0.0 1.9 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF2075 PF09848.4 gi|385804004|ref|YP_005840404.1| - 0.00072 18.6 0.2 0.0033 16.4 0.1 2.0 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Helicase_C_2 PF13307.1 gi|385804004|ref|YP_005840404.1| - 0.0023 17.8 0.1 0.035 14.0 0.0 2.7 3 0 0 3 3 3 1 Helicase C-terminal domain AAA_30 PF13604.1 gi|385804004|ref|YP_005840404.1| - 0.008 15.7 0.0 0.016 14.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|385804004|ref|YP_005840404.1| - 0.051 13.7 0.0 0.41 10.8 0.0 2.4 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|385804004|ref|YP_005840404.1| - 0.052 12.9 0.0 0.39 10.1 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF790 PF05626.6 gi|385804005|ref|YP_005840405.1| - 6.9e-118 393.4 0.3 9e-118 393.0 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF790) Nol1_Nop2_Fmu_2 PF13636.1 gi|385804006|ref|YP_005840406.1| - 8.1e-17 61.1 0.0 1e-16 60.8 0.0 1.1 1 0 0 1 1 1 1 pre-rRNA processing and ribosome biogenesis Nol1_Nop2_Fmu PF01189.12 gi|385804007|ref|YP_005840407.1| - 2.6e-47 161.5 0.0 3.2e-47 161.2 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|385804007|ref|YP_005840407.1| - 4.7e-06 26.2 0.0 7.5e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385804007|ref|YP_005840407.1| - 1.2e-05 25.8 0.0 1.9e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|385804007|ref|YP_005840407.1| - 4.5e-05 23.4 0.1 0.00016 21.6 0.1 1.8 2 0 0 2 2 2 1 Methyltransferase domain FtsJ PF01728.14 gi|385804007|ref|YP_005840407.1| - 0.022 14.7 0.0 0.037 14.0 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_15 PF09445.5 gi|385804007|ref|YP_005840407.1| - 0.12 11.9 0.0 0.18 11.3 0.0 1.5 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase PAC2 PF09754.4 gi|385804008|ref|YP_005840408.1| - 7.3e-43 146.9 0.1 8.3e-43 146.7 0.1 1.0 1 0 0 1 1 1 1 PAC2 family GrpE PF01025.14 gi|385804009|ref|YP_005840409.1| - 4.1e-33 114.2 14.0 4.1e-33 114.2 9.7 2.6 2 1 0 2 2 2 1 GrpE CENP-Q PF13094.1 gi|385804009|ref|YP_005840409.1| - 0.001 19.0 5.5 0.001 19.0 3.8 2.9 2 1 1 3 3 3 1 CENP-Q, a CENPA-CAD centromere complex subunit KH_1 PF00013.24 gi|385804009|ref|YP_005840409.1| - 0.058 13.0 0.0 0.15 11.6 0.0 1.7 1 0 0 1 1 1 0 KH domain Tho2 PF11262.3 gi|385804009|ref|YP_005840409.1| - 0.11 11.5 3.2 0.21 10.6 2.2 1.5 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 DUF1423 PF07227.6 gi|385804009|ref|YP_005840409.1| - 0.3 9.7 7.7 0.48 9.0 5.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1423) ApoO PF09769.4 gi|385804009|ref|YP_005840409.1| - 0.59 9.8 3.3 1.2 8.8 2.3 1.5 1 0 0 1 1 1 0 Apolipoprotein O Atg14 PF10186.4 gi|385804009|ref|YP_005840409.1| - 1.2 7.9 9.5 2.2 7.1 6.6 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Sugarporin_N PF11471.3 gi|385804009|ref|YP_005840409.1| - 7.2 6.3 6.8 17 5.1 4.7 1.6 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension HSP70 PF00012.15 gi|385804010|ref|YP_005840410.1| - 2.5e-237 788.6 15.6 9.1e-209 694.2 8.3 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.8 gi|385804010|ref|YP_005840410.1| - 3.9e-18 65.1 0.3 3.9e-18 65.1 0.2 2.5 2 1 0 2 2 2 1 MreB/Mbl protein FGGY_C PF02782.11 gi|385804010|ref|YP_005840410.1| - 0.0017 17.9 0.0 0.0046 16.5 0.0 1.7 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain DUF4446 PF14584.1 gi|385804010|ref|YP_005840410.1| - 0.011 15.5 1.1 0.011 15.5 0.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) FIVAR PF07554.8 gi|385804010|ref|YP_005840410.1| - 0.012 15.8 1.5 0.012 15.8 1.0 3.0 2 1 1 3 3 3 0 Uncharacterised Sugar-binding Domain Hydantoinase_A PF01968.13 gi|385804010|ref|YP_005840410.1| - 0.015 14.4 3.3 0.14 11.2 0.0 3.3 3 0 0 3 3 3 0 Hydantoinase/oxoprolinase StbA PF06406.6 gi|385804010|ref|YP_005840410.1| - 0.032 13.1 0.0 0.1 11.5 0.0 1.8 1 0 0 1 1 1 0 StbA protein FtsA PF14450.1 gi|385804010|ref|YP_005840410.1| - 0.044 13.6 2.6 12 5.7 0.0 4.0 3 1 0 3 3 3 0 Cell division protein FtsA PhyH PF05721.8 gi|385804010|ref|YP_005840410.1| - 0.12 12.3 1.0 0.34 10.9 0.7 1.7 1 0 0 1 1 1 0 Phytanoyl-CoA dioxygenase (PhyH) CorA PF01544.13 gi|385804010|ref|YP_005840410.1| - 2.1 7.3 5.6 4.9 6.1 3.9 1.6 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF1664 PF07889.7 gi|385804010|ref|YP_005840410.1| - 8 6.2 7.4 0.97 9.2 1.9 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) CTDII PF01556.13 gi|385804011|ref|YP_005840411.1| - 8.7e-32 108.8 0.0 8.2e-23 80.1 0.0 3.0 3 0 0 3 3 3 2 DnaJ C terminal domain DnaJ PF00226.26 gi|385804011|ref|YP_005840411.1| - 7.3e-25 86.4 2.3 1.6e-24 85.3 1.6 1.6 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|385804011|ref|YP_005840411.1| - 9.5e-16 57.6 16.8 2.3e-15 56.4 11.7 1.7 1 0 0 1 1 1 1 DnaJ central domain DZR PF12773.2 gi|385804011|ref|YP_005840411.1| - 0.0073 16.1 12.4 0.017 14.9 8.6 1.6 1 1 0 1 1 1 1 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|385804011|ref|YP_005840411.1| - 0.8 9.2 8.6 2.5 7.6 0.2 3.1 2 1 1 3 3 3 0 A2L zinc ribbon domain Opy2 PF09463.5 gi|385804011|ref|YP_005840411.1| - 1.7 8.7 17.8 3.5 7.8 3.8 3.2 3 0 0 3 3 3 0 Opy2 protein zf-RING_3 PF14369.1 gi|385804011|ref|YP_005840411.1| - 1.9 8.5 20.9 0.77 9.8 0.5 4.2 2 2 2 4 4 4 0 zinc-finger Mut7-C PF01927.11 gi|385804011|ref|YP_005840411.1| - 2.2 8.2 4.9 46 3.9 4.1 2.4 1 1 1 2 2 2 0 Mut7-C RNAse domain AMP-binding PF00501.23 gi|385804012|ref|YP_005840412.1| - 6.2e-05 21.5 0.0 0.01 14.2 0.0 2.3 2 0 0 2 2 2 2 AMP-binding enzyme Acetyltransf_1 PF00583.19 gi|385804013|ref|YP_005840413.1| - 2.2e-05 24.3 0.0 3.5e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|385804013|ref|YP_005840413.1| - 0.0041 17.2 0.0 0.0064 16.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|385804013|ref|YP_005840413.1| - 0.0067 16.5 0.0 0.011 15.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|385804013|ref|YP_005840413.1| - 0.041 13.7 0.0 0.07 12.9 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF1656 PF07869.7 gi|385804015|ref|YP_005840415.1| - 0.098 12.4 2.1 0.17 11.6 1.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1656) FtsX PF02687.16 gi|385804015|ref|YP_005840415.1| - 0.37 10.5 7.1 0.49 10.1 4.9 1.1 1 0 0 1 1 1 0 FtsX-like permease family dCMP_cyt_deam_1 PF00383.17 gi|385804017|ref|YP_005840417.1| - 1.3e-17 63.2 0.4 1.6e-17 62.9 0.2 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|385804017|ref|YP_005840417.1| - 7.5e-13 48.5 0.4 1.1e-12 48.0 0.3 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region YwqJ-deaminase PF14431.1 gi|385804017|ref|YP_005840417.1| - 0.032 14.0 0.4 0.21 11.4 0.1 1.9 1 1 1 2 2 2 0 YwqJ-like deaminase MafB19-deam PF14437.1 gi|385804017|ref|YP_005840417.1| - 0.09 12.4 0.5 0.19 11.3 0.4 1.5 1 1 0 1 1 1 0 MafB19-like deaminase PNP_UDP_1 PF01048.15 gi|385804018|ref|YP_005840418.1| - 8.1e-44 149.3 0.5 9.8e-44 149.0 0.4 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Pyr_redox_2 PF07992.9 gi|385804019|ref|YP_005840419.1| - 2.3e-18 66.7 0.1 8.4e-18 64.9 0.1 2.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|385804019|ref|YP_005840419.1| - 1.7e-09 37.9 0.5 3.6e-07 30.4 0.1 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|385804019|ref|YP_005840419.1| - 1.6e-07 31.6 0.3 0.00071 19.6 0.0 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|385804019|ref|YP_005840419.1| - 9.8e-05 22.1 0.9 2.6 7.7 0.0 3.4 3 0 0 3 3 3 3 FAD-NAD(P)-binding K_oxygenase PF13434.1 gi|385804019|ref|YP_005840419.1| - 0.0057 15.6 0.0 0.85 8.4 0.0 2.3 2 0 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.1 gi|385804019|ref|YP_005840419.1| - 0.057 13.4 0.1 16 5.5 0.0 2.7 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.16 gi|385804019|ref|YP_005840419.1| - 0.088 12.3 0.9 6 6.3 0.2 2.4 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain HrcA_DNA-bdg PF03444.10 gi|385804020|ref|YP_005840420.1| - 1.1e-36 124.1 0.1 1.5e-36 123.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|385804020|ref|YP_005840420.1| - 1.1e-08 35.0 0.0 1.9e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|385804020|ref|YP_005840420.1| - 2.6e-06 26.9 0.0 3.9e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|385804020|ref|YP_005840420.1| - 0.032 13.9 0.0 0.055 13.1 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Epimerase PF01370.16 gi|385804021|ref|YP_005840421.1| - 2.2e-42 145.1 0.5 2.8e-42 144.7 0.3 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|385804021|ref|YP_005840421.1| - 7e-19 67.7 0.4 8.7e-19 67.4 0.3 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|385804021|ref|YP_005840421.1| - 4.2e-15 55.2 0.1 6.3e-15 54.6 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|385804021|ref|YP_005840421.1| - 2.7e-11 42.9 0.5 4.9e-08 32.2 0.1 2.6 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|385804021|ref|YP_005840421.1| - 5.4e-11 41.9 0.1 5.6e-08 32.0 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|385804021|ref|YP_005840421.1| - 1.1e-06 28.6 0.6 0.0077 16.1 0.1 2.4 1 1 1 2 2 2 2 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|385804021|ref|YP_005840421.1| - 2.5e-05 24.3 0.0 3.1e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding KR PF08659.5 gi|385804021|ref|YP_005840421.1| - 0.0043 16.7 0.3 0.33 10.5 0.1 2.3 1 1 1 2 2 2 1 KR domain 2OG-FeII_Oxy_4 PF13661.1 gi|385804021|ref|YP_005840421.1| - 0.024 14.2 0.0 0.052 13.1 0.0 1.5 1 0 0 1 1 1 0 2OG-Fe(II) oxygenase superfamily DNA_topoisoIV PF00521.15 gi|385804022|ref|YP_005840422.1| - 8e-149 496.0 0.0 1.1e-148 495.6 0.0 1.2 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|385804022|ref|YP_005840422.1| - 7e-68 223.7 7.6 8.3e-12 44.2 0.1 6.4 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller DUF2262 PF10020.4 gi|385804022|ref|YP_005840422.1| - 0.011 15.8 0.8 0.023 14.8 0.2 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2262) DNA_gyraseB PF00204.20 gi|385804023|ref|YP_005840423.1| - 4e-59 198.6 0.3 9e-59 197.5 0.2 1.6 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|385804023|ref|YP_005840423.1| - 2.6e-30 103.9 0.0 5.5e-30 102.9 0.0 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.21 gi|385804023|ref|YP_005840423.1| - 2.1e-20 72.5 0.0 5.7e-20 71.0 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.17 gi|385804023|ref|YP_005840423.1| - 2.1e-18 66.1 0.2 5.4e-17 61.6 0.0 2.8 3 0 0 3 3 3 1 Toprim domain HATPase_c_3 PF13589.1 gi|385804023|ref|YP_005840423.1| - 0.00044 19.9 1.9 0.00048 19.8 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Intein_splicing PF14890.1 gi|385804023|ref|YP_005840423.1| - 0.0042 16.0 1.8 0.011 14.6 1.3 1.6 1 1 0 1 1 1 1 Intein splicing domain PT-HINT PF07591.6 gi|385804023|ref|YP_005840423.1| - 0.0096 15.7 0.3 0.99 9.2 0.0 2.5 1 1 1 2 2 2 1 Pretoxin HINT domain Topo-VIb_trans PF09239.6 gi|385804024|ref|YP_005840424.1| - 1.2e-62 210.2 0.0 2.5e-62 209.1 0.0 1.6 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|385804024|ref|YP_005840424.1| - 2.9e-13 49.5 0.1 1.6e-11 43.8 0.0 3.2 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|385804024|ref|YP_005840424.1| - 1.2e-08 34.7 0.0 3.2e-06 26.8 0.0 3.0 2 0 0 2 2 2 2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|385804024|ref|YP_005840424.1| - 0.00015 21.5 0.2 0.0016 18.2 0.0 2.7 3 0 0 3 3 3 1 Histidine kinase-like ATPase domain Intein_splicing PF14890.1 gi|385804024|ref|YP_005840424.1| - 0.0028 16.6 0.0 0.038 12.8 0.0 2.2 2 0 0 2 2 2 1 Intein splicing domain TP6A_N PF04406.9 gi|385804025|ref|YP_005840425.1| - 3.1e-20 71.5 0.2 5.5e-20 70.8 0.2 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase TMP-TENI PF02581.12 gi|385804026|ref|YP_005840426.1| - 1.2e-59 200.4 4.3 1.4e-59 200.2 3.0 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI ThiG PF05690.9 gi|385804026|ref|YP_005840426.1| - 9.6e-08 31.3 2.0 1.2e-07 31.0 1.4 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|385804026|ref|YP_005840426.1| - 5.2e-05 22.5 7.3 7.1e-05 22.1 5.1 1.1 1 0 0 1 1 1 1 Nitronate monooxygenase DHO_dh PF01180.16 gi|385804026|ref|YP_005840426.1| - 0.00049 19.1 0.6 0.00074 18.5 0.4 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase DUF561 PF04481.7 gi|385804026|ref|YP_005840426.1| - 0.00091 18.2 0.7 0.0041 16.1 0.2 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF561) Dus PF01207.12 gi|385804026|ref|YP_005840426.1| - 0.0094 14.8 0.2 0.016 14.0 0.0 1.4 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) PRAI PF00697.17 gi|385804026|ref|YP_005840426.1| - 0.041 13.4 0.1 3.5 7.1 0.1 2.2 2 0 0 2 2 2 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase IMPDH PF00478.20 gi|385804026|ref|YP_005840426.1| - 0.044 12.6 6.8 0.055 12.3 4.7 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain OMPdecase PF00215.19 gi|385804026|ref|YP_005840426.1| - 0.1 11.9 2.8 0.14 11.5 1.4 1.8 1 1 1 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.9 gi|385804026|ref|YP_005840426.1| - 0.11 11.4 9.8 5.4 5.9 0.0 3.5 1 1 3 4 4 4 0 Putative N-acetylmannosamine-6-phosphate epimerase HK PF02110.10 gi|385804027|ref|YP_005840427.1| - 4.8e-62 209.3 6.5 6e-62 208.9 4.5 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.12 gi|385804027|ref|YP_005840427.1| - 2e-05 24.0 3.5 2.7e-05 23.5 2.4 1.2 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.7 gi|385804028|ref|YP_005840428.1| - 2.9e-82 275.5 3.9 3.5e-82 275.2 2.7 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.19 gi|385804028|ref|YP_005840428.1| - 5.1e-10 38.9 2.2 5.1e-10 38.9 1.5 1.4 2 0 0 2 2 2 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|385804028|ref|YP_005840428.1| - 0.0011 18.2 3.4 0.0023 17.2 2.4 1.6 1 1 0 1 1 1 1 Carbohydrate kinase HK PF02110.10 gi|385804028|ref|YP_005840428.1| - 0.0095 15.1 4.2 0.13 11.4 2.9 2.3 1 1 0 1 1 1 1 Hydroxyethylthiazole kinase family EIF_2_alpha PF07541.7 gi|385804028|ref|YP_005840428.1| - 0.11 12.2 0.0 0.94 9.2 0.0 2.1 2 0 0 2 2 2 0 Eukaryotic translation initiation factor 2 alpha subunit Lactamase_B_3 PF13483.1 gi|385804029|ref|YP_005840429.1| - 5.8e-28 97.6 0.1 7.6e-28 97.2 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain XdhC_C PF13478.1 gi|385804029|ref|YP_005840429.1| - 0.012 15.9 0.0 0.021 15.1 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain Pox_polyA_pol PF03296.8 gi|385804029|ref|YP_005840429.1| - 0.054 13.0 0.1 0.35 10.4 0.0 1.9 2 0 0 2 2 2 0 Poxvirus poly(A) polymerase nucleotidyltransferase domain DNA_ligase_A_M PF01068.16 gi|385804030|ref|YP_005840430.1| - 1.3e-46 158.5 0.0 1.9e-46 158.0 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|385804030|ref|YP_005840430.1| - 8.5e-38 129.9 0.0 1.7e-37 128.9 0.0 1.5 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|385804030|ref|YP_005840430.1| - 7.8e-18 64.6 0.0 3.4e-17 62.6 0.0 2.1 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region DUF3839 PF12943.2 gi|385804030|ref|YP_005840430.1| - 0.089 11.9 0.1 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3839) Proteasome PF00227.21 gi|385804032|ref|YP_005840432.1| - 5.3e-51 172.6 0.2 6.1e-51 172.4 0.2 1.0 1 0 0 1 1 1 1 Proteasome subunit VP7 PF00434.13 gi|385804033|ref|YP_005840433.1| - 0.0039 16.1 0.0 0.0044 15.9 0.0 1.0 1 0 0 1 1 1 1 Glycoprotein VP7 DUF555 PF04475.7 gi|385804034|ref|YP_005840434.1| - 1.5e-45 153.3 0.0 1.8e-45 153.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zinc_ribbon_2 PF13240.1 gi|385804034|ref|YP_005840434.1| - 0.019 14.4 0.2 0.032 13.7 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain QueC PF06508.8 gi|385804035|ref|YP_005840435.1| - 0.15 11.3 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC CBS PF00571.23 gi|385804036|ref|YP_005840436.1| - 5.7e-20 70.8 4.7 6.4e-14 51.4 0.0 2.7 2 1 0 2 2 2 2 CBS domain HTH_3 PF01381.17 gi|385804036|ref|YP_005840436.1| - 5.9e-11 42.0 0.1 1.1e-10 41.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|385804036|ref|YP_005840436.1| - 1.8e-10 40.8 0.7 3.7e-10 39.8 0.5 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|385804036|ref|YP_005840436.1| - 4.4e-08 33.0 0.0 7.4e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|385804036|ref|YP_005840436.1| - 0.0002 21.0 0.1 0.00037 20.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|385804036|ref|YP_005840436.1| - 0.0045 17.1 0.0 0.0084 16.2 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain ILVD_EDD PF00920.16 gi|385804036|ref|YP_005840436.1| - 0.0055 15.1 0.1 0.0075 14.7 0.1 1.2 1 0 0 1 1 1 1 Dehydratase family HTH_25 PF13413.1 gi|385804036|ref|YP_005840436.1| - 0.02 14.5 0.1 0.033 13.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain AIRS_C PF02769.17 gi|385804037|ref|YP_005840437.1| - 2.9e-17 63.0 0.0 5.3e-17 62.2 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|385804037|ref|YP_005840437.1| - 1.1e-13 51.1 1.4 1.1e-13 51.1 1.0 1.8 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain PsaD PF02531.11 gi|385804037|ref|YP_005840437.1| - 0.035 13.3 0.0 0.094 11.9 0.0 1.7 2 0 0 2 2 2 0 PsaD Peptidase_M50 PF02163.17 gi|385804039|ref|YP_005840439.1| - 2.7e-08 33.0 17.2 5.8e-08 31.9 10.0 2.5 1 1 1 2 2 2 1 Peptidase family M50 Tmemb_185A PF10269.4 gi|385804039|ref|YP_005840439.1| - 0.3 10.6 6.7 1.1 8.8 4.7 1.9 1 1 0 1 1 1 0 Transmembrane Fragile-X-F protein TraB PF01963.12 gi|385804040|ref|YP_005840440.1| - 4e-38 131.3 0.1 1.5e-19 70.4 0.0 2.2 2 0 0 2 2 2 2 TraB family DUF399 PF04187.8 gi|385804040|ref|YP_005840440.1| - 0.15 11.4 0.0 0.28 10.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF399 DNase-RNase PF02577.9 gi|385804041|ref|YP_005840441.1| - 4.7e-36 122.9 0.0 5.3e-36 122.8 0.0 1.1 1 0 0 1 1 1 1 Bifunctional nuclease tRNA-synt_1 PF00133.17 gi|385804043|ref|YP_005840443.1| - 3.5e-183 609.8 1.1 4.8e-183 609.4 0.8 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|385804043|ref|YP_005840443.1| - 1.2e-31 109.4 0.1 2.7e-31 108.4 0.1 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|385804043|ref|YP_005840443.1| - 6.3e-30 104.1 1.1 4.4e-11 42.0 0.0 4.4 4 1 0 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|385804043|ref|YP_005840443.1| - 0.00011 21.5 0.0 0.00027 20.2 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.13 gi|385804043|ref|YP_005840443.1| - 0.00058 18.6 0.0 0.0091 14.7 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.14 gi|385804043|ref|YP_005840443.1| - 0.023 13.8 0.0 0.086 11.9 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain zf-FPG_IleRS PF06827.9 gi|385804043|ref|YP_005840443.1| - 0.12 12.0 0.2 0.32 10.6 0.1 1.7 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS Dak1 PF02733.12 gi|385804044|ref|YP_005840444.1| - 3.3e-100 334.8 4.8 4.1e-100 334.5 3.3 1.0 1 0 0 1 1 1 1 Dak1 domain Dak2 PF02734.12 gi|385804045|ref|YP_005840445.1| - 3.4e-48 163.5 0.6 3.4e-48 163.5 0.4 1.5 2 0 0 2 2 2 1 DAK2 domain EIIA-man PF03610.11 gi|385804046|ref|YP_005840446.1| - 3.5e-16 59.2 3.7 1e-08 35.2 0.5 2.1 2 0 0 2 2 2 2 PTS system fructose IIA component CoatB PF10389.4 gi|385804046|ref|YP_005840446.1| - 3.5 7.5 8.7 1.2 9.0 0.7 2.6 2 0 0 2 2 2 0 Bacteriophage coat protein B DAO PF01266.19 gi|385804047|ref|YP_005840447.1| - 3.6e-61 207.0 2.1 4.6e-61 206.7 1.5 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|385804047|ref|YP_005840447.1| - 7.3e-07 28.5 4.0 2.3e-06 26.9 2.7 1.7 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|385804047|ref|YP_005840447.1| - 4.3e-06 26.7 2.2 0.00025 20.9 1.5 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|385804047|ref|YP_005840447.1| - 2.6e-05 24.3 0.2 0.26 11.2 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|385804047|ref|YP_005840447.1| - 0.00051 19.2 4.0 0.0011 18.1 2.8 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|385804047|ref|YP_005840447.1| - 0.00073 18.1 4.4 0.36 9.2 1.5 2.1 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|385804047|ref|YP_005840447.1| - 0.0023 17.9 5.5 0.0076 16.2 3.8 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.13 gi|385804047|ref|YP_005840447.1| - 0.0056 16.3 1.3 0.012 15.2 0.9 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|385804047|ref|YP_005840447.1| - 0.012 16.0 3.0 0.11 12.8 0.7 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|385804047|ref|YP_005840447.1| - 0.02 14.0 1.7 0.02 14.0 1.1 2.1 2 0 0 2 2 2 0 Thi4 family FAD_binding_2 PF00890.19 gi|385804047|ref|YP_005840447.1| - 0.054 12.3 11.4 0.58 8.9 7.9 2.0 1 1 0 1 1 1 0 FAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|385804047|ref|YP_005840447.1| - 0.11 12.1 0.3 0.21 11.3 0.2 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|385804047|ref|YP_005840447.1| - 0.14 12.6 0.2 0.76 10.2 0.4 2.1 2 0 0 2 2 1 0 NADP oxidoreductase coenzyme F420-dependent Lycopene_cycl PF05834.7 gi|385804047|ref|YP_005840447.1| - 2.5 6.9 4.4 5.9 5.7 0.8 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|385804047|ref|YP_005840447.1| - 5.1 6.8 7.3 0.61 9.8 1.2 2.1 2 0 0 2 2 2 0 FAD-NAD(P)-binding Amino_oxidase PF01593.19 gi|385804047|ref|YP_005840447.1| - 9.5 5.1 8.1 0.33 9.9 0.1 2.3 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase Hydrolase_3 PF08282.7 gi|385804048|ref|YP_005840448.1| - 1.1e-26 93.9 0.0 1.6e-17 63.9 0.0 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|385804048|ref|YP_005840448.1| - 6.3e-06 25.6 0.0 9.5e-05 21.8 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.21 gi|385804048|ref|YP_005840448.1| - 0.0011 19.4 0.5 0.11 12.9 0.4 2.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|385804048|ref|YP_005840448.1| - 0.045 13.9 0.2 4.4 7.4 0.0 2.6 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|385804048|ref|YP_005840448.1| - 0.051 12.4 0.3 0.19 10.6 0.0 1.9 2 0 0 2 2 2 0 Trehalose-phosphatase HAD PF12710.2 gi|385804048|ref|YP_005840448.1| - 0.062 13.4 4.8 0.17 12.0 0.1 2.7 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase DUF2608 PF11019.3 gi|385804048|ref|YP_005840448.1| - 0.12 11.3 0.0 0.23 10.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2608) BMC PF00936.14 gi|385804048|ref|YP_005840448.1| - 0.42 10.3 2.1 0.74 9.5 0.1 2.1 2 0 0 2 2 2 0 BMC domain zf-CCHC_5 PF14787.1 gi|385804049|ref|YP_005840449.1| - 0.0016 17.8 0.2 0.025 14.0 0.2 2.2 2 0 0 2 2 2 1 GAG-polyprotein viral zinc-finger Methyltransf_11 PF08241.7 gi|385804050|ref|YP_005840450.1| - 2e-17 63.4 0.0 2.9e-17 62.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|385804050|ref|YP_005840450.1| - 5.5e-10 39.5 0.0 8.8e-10 38.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385804050|ref|YP_005840450.1| - 1.2e-09 37.9 0.0 1.5e-09 37.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|385804050|ref|YP_005840450.1| - 2.7e-07 29.9 0.0 3.8e-07 29.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|385804050|ref|YP_005840450.1| - 4.9e-06 26.3 0.0 6.4e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385804050|ref|YP_005840450.1| - 5.1e-06 27.0 0.0 8.6e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|385804050|ref|YP_005840450.1| - 0.00031 21.1 0.0 0.0005 20.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.7 gi|385804050|ref|YP_005840450.1| - 0.00098 18.0 0.0 0.0012 17.7 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_26 PF13659.1 gi|385804050|ref|YP_005840450.1| - 0.0015 18.5 0.0 0.0027 17.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|385804050|ref|YP_005840450.1| - 0.037 13.0 0.0 0.048 12.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase FYVE PF01363.16 gi|385804051|ref|YP_005840451.1| - 9.6e-05 22.2 0.7 0.0001 22.1 0.5 1.1 1 0 0 1 1 1 1 FYVE zinc finger DZR PF12773.2 gi|385804051|ref|YP_005840451.1| - 0.0021 17.8 1.5 0.0024 17.6 1.1 1.1 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.14 gi|385804051|ref|YP_005840451.1| - 0.0054 16.4 1.5 0.0055 16.3 1.0 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Cript PF10235.4 gi|385804051|ref|YP_005840451.1| - 0.029 14.6 0.5 0.032 14.5 0.4 1.1 1 0 0 1 1 1 0 Microtubule-associated protein CRIPT NRDD PF13597.1 gi|385804051|ref|YP_005840451.1| - 0.038 12.0 1.1 0.036 12.1 0.7 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Nudix_N_2 PF14803.1 gi|385804051|ref|YP_005840451.1| - 0.077 12.6 2.9 0.82 9.4 0.1 2.1 2 0 0 2 2 2 0 Nudix N-terminal RNA_POL_M_15KD PF02150.11 gi|385804051|ref|YP_005840451.1| - 0.08 12.6 3.6 0.44 10.2 0.2 2.1 1 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.5 gi|385804051|ref|YP_005840451.1| - 0.099 12.6 3.7 3.7 7.5 0.2 2.2 1 1 1 2 2 2 0 Zinc ribbon domain NOB1_Zn_bind PF08772.6 gi|385804051|ref|YP_005840451.1| - 0.11 12.2 1.4 0.14 11.9 1.0 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like ADK_lid PF05191.9 gi|385804051|ref|YP_005840451.1| - 0.24 11.1 2.7 7.7 6.2 1.0 2.3 1 1 1 2 2 2 0 Adenylate kinase, active site lid RecR PF02132.10 gi|385804051|ref|YP_005840451.1| - 0.58 9.6 5.3 2.5 7.5 3.6 1.9 1 1 1 2 2 2 0 RecR protein GATA PF00320.22 gi|385804051|ref|YP_005840451.1| - 0.65 9.3 3.5 1.6 8.1 0.1 2.2 1 1 1 2 2 2 0 GATA zinc finger zf-ribbon_3 PF13248.1 gi|385804051|ref|YP_005840451.1| - 0.77 9.0 3.4 4.3 6.6 2.4 1.9 1 1 1 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|385804051|ref|YP_005840451.1| - 1.7 8.3 5.1 3 7.5 3.5 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.8 gi|385804051|ref|YP_005840451.1| - 3.2 7.3 5.7 5.5 6.5 0.4 2.0 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-C2H2_6 PF13912.1 gi|385804051|ref|YP_005840451.1| - 4.1 7.4 6.5 1.5 8.8 0.3 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2H2_3 PF13878.1 gi|385804051|ref|YP_005840451.1| - 4.5 6.9 5.7 2.4 7.7 0.1 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO DUF368 PF04018.8 gi|385804052|ref|YP_005840452.1| - 1.3e-67 227.6 17.4 1.3e-67 227.6 12.0 1.5 1 1 1 2 2 2 1 Domain of unknown function (DUF368) UDPG_MGDP_dh_N PF03721.9 gi|385804053|ref|YP_005840453.1| - 1.8e-47 161.0 0.1 2.7e-45 154.0 0.0 2.9 2 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|385804053|ref|YP_005840453.1| - 1.2e-32 111.9 0.1 2.4e-32 111.0 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|385804053|ref|YP_005840453.1| - 2.3e-26 91.9 0.1 6e-26 90.6 0.1 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Pyr_redox PF00070.22 gi|385804053|ref|YP_005840453.1| - 4.1e-05 23.9 0.2 0.00023 21.4 0.2 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|385804053|ref|YP_005840453.1| - 5.9e-05 22.7 0.3 0.00016 21.4 0.0 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|385804053|ref|YP_005840453.1| - 0.00022 21.0 0.0 0.0008 19.1 0.0 1.9 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|385804053|ref|YP_005840453.1| - 0.0016 17.9 0.0 0.0047 16.3 0.0 1.8 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.16 gi|385804053|ref|YP_005840453.1| - 0.019 14.5 0.0 0.038 13.5 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.1 gi|385804053|ref|YP_005840453.1| - 0.029 14.3 0.2 0.096 12.7 0.1 2.0 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain 2-Hacid_dh_C PF02826.14 gi|385804053|ref|YP_005840453.1| - 0.043 12.9 0.2 0.75 8.9 0.0 2.5 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|385804053|ref|YP_005840453.1| - 0.05 13.4 0.0 1.9 8.3 0.0 2.6 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|385804053|ref|YP_005840453.1| - 0.055 13.4 1.3 0.59 10.1 0.0 3.0 3 1 0 3 3 3 0 TrkA-N domain CHASE2 PF05226.6 gi|385804053|ref|YP_005840453.1| - 0.1 11.8 1.4 0.34 10.0 0.1 2.3 2 1 1 3 3 3 0 CHASE2 domain DAO PF01266.19 gi|385804053|ref|YP_005840453.1| - 0.3 9.9 2.4 0.45 9.3 0.7 1.9 2 0 0 2 2 2 0 FAD dependent oxidoreductase STT3 PF02516.9 gi|385804054|ref|YP_005840454.1| - 2.2e-19 69.7 26.0 2.2e-19 69.7 18.0 2.7 2 1 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit NTP_transferase PF00483.18 gi|385804055|ref|YP_005840455.1| - 9.8e-42 142.9 0.0 1.1e-41 142.7 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|385804055|ref|YP_005840455.1| - 8.1e-15 55.2 0.0 9.5e-15 55.0 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|385804055|ref|YP_005840455.1| - 5.2e-05 22.8 0.0 0.00025 20.6 0.0 1.9 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Epimerase PF01370.16 gi|385804056|ref|YP_005840456.1| - 1.4e-62 211.2 0.1 1.7e-62 210.9 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|385804056|ref|YP_005840456.1| - 3.7e-20 71.7 0.0 4.9e-20 71.3 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|385804056|ref|YP_005840456.1| - 7.4e-16 57.8 0.1 1.2e-15 57.1 0.1 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|385804056|ref|YP_005840456.1| - 5.8e-13 48.3 0.0 1.9e-12 46.7 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|385804056|ref|YP_005840456.1| - 5.6e-11 41.8 1.0 9.8e-10 37.7 0.7 2.1 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|385804056|ref|YP_005840456.1| - 2.5e-09 37.4 0.5 4.6e-08 33.2 0.3 2.1 1 1 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|385804056|ref|YP_005840456.1| - 3.4e-06 26.5 0.0 5.3e-06 25.8 0.0 1.4 1 1 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|385804056|ref|YP_005840456.1| - 7.8e-06 25.9 0.4 2.7e-05 24.1 0.3 2.0 1 1 0 1 1 1 1 short chain dehydrogenase Epimerase_Csub PF13950.1 gi|385804056|ref|YP_005840456.1| - 0.00047 20.0 0.0 0.00097 19.0 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit 3HCDH_N PF02737.13 gi|385804056|ref|YP_005840456.1| - 0.026 14.1 0.2 0.051 13.2 0.0 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KR PF08659.5 gi|385804056|ref|YP_005840456.1| - 0.11 12.1 0.3 1.9 8.1 0.2 2.2 1 1 0 1 1 1 0 KR domain ABC_tran PF00005.22 gi|385804057|ref|YP_005840457.1| - 1.2e-32 113.0 0.0 2.2e-32 112.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|385804057|ref|YP_005840457.1| - 2.9e-07 30.1 4.2 4.4e-07 29.6 2.9 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.14 gi|385804057|ref|YP_005840457.1| - 3.9e-07 29.5 1.2 7e-06 25.4 0.1 2.2 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|385804057|ref|YP_005840457.1| - 0.00012 22.8 0.6 0.00042 21.1 0.4 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|385804057|ref|YP_005840457.1| - 0.00012 21.2 0.0 0.0003 20.0 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_21 PF13304.1 gi|385804057|ref|YP_005840457.1| - 0.0004 20.4 0.0 0.081 12.8 0.0 2.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|385804057|ref|YP_005840457.1| - 0.0007 19.0 0.0 0.0014 18.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|385804057|ref|YP_005840457.1| - 0.0013 18.1 0.1 0.0051 16.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|385804057|ref|YP_005840457.1| - 0.0079 16.3 0.4 0.071 13.2 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|385804057|ref|YP_005840457.1| - 0.013 15.5 0.2 0.057 13.4 0.1 2.1 2 1 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.1 gi|385804057|ref|YP_005840457.1| - 0.017 14.7 0.0 0.2 11.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|385804057|ref|YP_005840457.1| - 0.045 14.0 0.0 0.13 12.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|385804057|ref|YP_005840457.1| - 0.083 11.4 0.1 0.17 10.4 0.0 1.5 2 0 0 2 2 2 0 Predicted ATPase of the ABC class DUF87 PF01935.12 gi|385804057|ref|YP_005840457.1| - 0.087 12.6 0.2 0.26 11.0 0.1 1.8 1 1 0 1 1 1 0 Domain of unknown function DUF87 DASH_Dam1 PF08653.5 gi|385804057|ref|YP_005840457.1| - 0.33 10.7 1.4 1.3 8.8 0.1 2.3 2 0 0 2 2 2 0 DASH complex subunit Dam1 Glycos_transf_1 PF00534.15 gi|385804058|ref|YP_005840458.1| - 7e-39 132.9 0.0 1.5e-38 131.8 0.0 1.5 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|385804058|ref|YP_005840458.1| - 2.5e-20 73.0 0.0 4.3e-20 72.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|385804058|ref|YP_005840458.1| - 1.4e-13 50.9 0.0 2.6e-13 50.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|385804058|ref|YP_005840458.1| - 1.3e-10 41.6 0.0 3.6e-10 40.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|385804058|ref|YP_005840458.1| - 8.1e-08 32.1 0.0 3.9e-07 29.9 0.0 2.0 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|385804058|ref|YP_005840458.1| - 1.8e-07 31.1 0.0 3.3e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Methyltransf_21 PF05050.7 gi|385804064|ref|YP_005840464.1| - 0.002 18.0 0.0 0.003 17.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_21 PF05050.7 gi|385804065|ref|YP_005840465.1| - 5.5e-13 49.2 0.1 8e-13 48.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|385804065|ref|YP_005840465.1| - 5.6e-06 26.9 0.1 9.9e-06 26.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|385804065|ref|YP_005840465.1| - 0.014 14.9 0.0 0.019 14.5 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein V_cholerae_RfbT PF05575.6 gi|385804065|ref|YP_005840465.1| - 0.05 12.6 0.0 0.058 12.4 0.0 1.2 1 0 0 1 1 1 0 Vibrio cholerae RfbT protein Glycos_transf_1 PF00534.15 gi|385804067|ref|YP_005840467.1| - 1.8e-17 63.2 0.0 2.9e-17 62.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|385804067|ref|YP_005840467.1| - 6.9e-13 48.9 0.0 5.2e-12 46.0 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|385804067|ref|YP_005840467.1| - 0.00061 20.0 0.0 0.0014 18.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycogen_syn PF05693.8 gi|385804067|ref|YP_005840467.1| - 0.1 10.7 0.0 0.15 10.2 0.0 1.2 1 0 0 1 1 1 0 Glycogen synthase Capsule_synth PF05159.9 gi|385804068|ref|YP_005840468.1| - 0.00038 20.0 0.1 0.00076 19.0 0.1 1.4 1 0 0 1 1 1 1 Capsule polysaccharide biosynthesis protein Glyphos_transf PF04464.9 gi|385804068|ref|YP_005840468.1| - 0.0026 16.6 0.2 0.014 14.2 0.1 1.9 1 1 0 1 1 1 1 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DUF354 PF04007.7 gi|385804068|ref|YP_005840468.1| - 0.0064 15.4 0.0 0.012 14.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF354) LpxB PF02684.10 gi|385804068|ref|YP_005840468.1| - 0.039 12.5 0.0 0.067 11.8 0.0 1.3 1 0 0 1 1 1 0 Lipid-A-disaccharide synthetase MAF_flag10 PF01973.13 gi|385804068|ref|YP_005840468.1| - 0.085 12.3 0.0 0.28 10.6 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function DUF115 DUF892 PF05974.7 gi|385804068|ref|YP_005840468.1| - 0.11 12.3 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF892) Glycos_transf_N PF04413.11 gi|385804068|ref|YP_005840468.1| - 0.15 11.2 0.0 0.41 9.7 0.0 1.8 2 0 0 2 2 2 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DDE_Tnp_1 PF01609.16 gi|385804069|ref|YP_005840469.1| - 2.2e-22 79.6 3.1 6.5e-22 78.1 2.2 1.7 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|385804069|ref|YP_005840469.1| - 0.00024 20.9 0.0 0.0004 20.1 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|385804069|ref|YP_005840469.1| - 0.00058 19.8 0.0 0.0014 18.5 0.0 1.7 1 0 0 1 1 1 1 Transposase DDE domain DUF1989 PF09347.5 gi|385804069|ref|YP_005840469.1| - 0.0033 16.8 0.2 0.0054 16.2 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1989) DDE_Tnp_1_2 PF13586.1 gi|385804069|ref|YP_005840469.1| - 0.0034 17.5 0.1 0.007 16.5 0.1 1.6 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|385804069|ref|YP_005840469.1| - 0.055 13.3 0.0 0.14 12.0 0.0 1.7 1 0 0 1 1 1 0 Transposase domain (DUF772) Glycos_transf_1 PF00534.15 gi|385804070|ref|YP_005840470.1| - 1.2e-30 106.2 0.0 1.7e-30 105.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|385804070|ref|YP_005840470.1| - 6.5e-16 58.7 0.0 1.3e-15 57.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|385804070|ref|YP_005840470.1| - 0.00011 22.3 0.0 0.0003 21.0 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.21 gi|385804071|ref|YP_005840471.1| - 4.3e-25 88.3 0.1 6.4e-25 87.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|385804071|ref|YP_005840471.1| - 5.3e-12 46.0 0.0 1.1e-11 44.9 0.0 1.6 1 1 1 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|385804071|ref|YP_005840471.1| - 1.5e-07 30.8 1.4 2.3e-07 30.1 0.1 1.9 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|385804071|ref|YP_005840471.1| - 0.00099 18.4 0.0 0.0021 17.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.1 gi|385804071|ref|YP_005840471.1| - 0.0013 18.5 0.1 0.002 17.8 0.1 1.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|385804072|ref|YP_005840472.1| - 1.2e-18 67.3 0.1 3.6e-18 65.8 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|385804072|ref|YP_005840472.1| - 6.1e-11 42.5 1.2 9.1e-11 41.9 0.8 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|385804072|ref|YP_005840472.1| - 1.4e-05 25.3 0.1 2.5e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.2 gi|385804072|ref|YP_005840472.1| - 3.6e-05 23.8 0.0 5.8e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain RHH_1 PF01402.16 gi|385804074|ref|YP_005840474.1| - 4.9e-05 23.0 0.1 0.00011 21.9 0.0 1.6 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family GvpK PF05121.7 gi|385804074|ref|YP_005840474.1| - 0.01 15.6 0.1 0.015 15.0 0.1 1.2 1 0 0 1 1 1 0 Gas vesicle protein K RHH_2 PF03693.9 gi|385804074|ref|YP_005840474.1| - 0.012 15.7 0.3 0.076 13.1 0.1 1.8 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0156) DUF4336 PF14234.1 gi|385804076|ref|YP_005840476.1| - 0.085 12.0 0.0 0.75 8.9 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4336) DUF2742 PF10888.3 gi|385804077|ref|YP_005840477.1| - 0.13 12.1 0.0 0.15 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2742) HMGL-like PF00682.14 gi|385804078|ref|YP_005840478.1| - 3.4e-71 239.6 3.5 5.4e-71 238.9 2.4 1.3 1 0 0 1 1 1 1 HMGL-like Lipase_GDSL_2 PF13472.1 gi|385804078|ref|YP_005840478.1| - 0.00086 19.4 0.6 0.043 13.9 0.2 2.3 2 0 0 2 2 2 1 GDSL-like Lipase/Acylhydrolase family Radical_SAM PF04055.16 gi|385804078|ref|YP_005840478.1| - 0.024 14.8 0.2 1.1 9.4 0.0 3.0 2 1 1 3 3 3 0 Radical SAM superfamily DUF2945 PF11160.3 gi|385804079|ref|YP_005840479.1| - 0.099 12.4 0.1 0.22 11.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2945) TPP_enzyme_C PF02775.16 gi|385804080|ref|YP_005840480.1| - 5.1e-50 169.0 0.8 1.2e-49 167.8 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.13 gi|385804080|ref|YP_005840480.1| - 8.1e-50 168.6 0.4 2.4e-49 167.1 0.2 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|385804080|ref|YP_005840480.1| - 8.9e-40 135.6 0.3 2.8e-39 134.0 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.11 gi|385804080|ref|YP_005840480.1| - 0.0084 15.6 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit ALS_ss_C PF10369.4 gi|385804081|ref|YP_005840481.1| - 1.4e-20 72.7 0.2 2.9e-20 71.7 0.0 1.6 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|385804081|ref|YP_005840481.1| - 1.6e-18 66.2 0.4 6.6e-18 64.2 0.1 2.0 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|385804081|ref|YP_005840481.1| - 7.4e-10 38.0 0.5 2.4e-09 36.4 0.1 2.0 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.1 gi|385804081|ref|YP_005840481.1| - 1.3e-05 24.7 0.1 3.1e-05 23.5 0.0 1.6 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|385804081|ref|YP_005840481.1| - 0.00044 20.5 0.1 0.00092 19.5 0.0 1.5 1 0 0 1 1 1 1 ACT domain Phage_rep_org_N PF09681.5 gi|385804081|ref|YP_005840481.1| - 0.014 14.9 0.1 0.032 13.8 0.0 1.5 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) IlvN PF07991.7 gi|385804082|ref|YP_005840482.1| - 1.2e-68 229.5 0.6 1.7e-68 229.1 0.4 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|385804082|ref|YP_005840482.1| - 4.5e-53 179.0 0.1 8.4e-53 178.1 0.0 1.4 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|385804082|ref|YP_005840482.1| - 8e-08 32.6 0.2 2.2e-07 31.2 0.0 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|385804082|ref|YP_005840482.1| - 9.7e-07 28.1 0.0 1.9e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|385804082|ref|YP_005840482.1| - 0.00019 21.2 0.0 0.00042 20.1 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Oxidored_nitro PF00148.14 gi|385804082|ref|YP_005840482.1| - 0.0033 16.1 0.4 0.0087 14.7 0.0 1.8 2 1 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase AdoHcyase_NAD PF00670.16 gi|385804082|ref|YP_005840482.1| - 0.0034 17.2 0.0 0.0069 16.2 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.11 gi|385804082|ref|YP_005840482.1| - 0.023 14.1 0.2 0.051 13.0 0.1 1.6 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|385804082|ref|YP_005840482.1| - 0.042 13.5 0.4 0.62 9.7 0.3 2.4 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|385804082|ref|YP_005840482.1| - 0.051 13.2 0.3 0.13 11.8 0.0 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Aconitase PF00330.15 gi|385804083|ref|YP_005840483.1| - 7.2e-142 473.1 0.0 8.2e-142 472.9 0.0 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF192 PF02643.10 gi|385804083|ref|YP_005840483.1| - 0.01 15.5 0.0 1 9.0 0.0 2.7 2 1 1 3 3 3 0 Uncharacterized ACR, COG1430 Aconitase_C PF00694.14 gi|385804084|ref|YP_005840484.1| - 4.1e-21 75.4 0.0 6e-21 74.9 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain GSHPx PF00255.14 gi|385804084|ref|YP_005840484.1| - 0.078 12.3 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Glutathione peroxidase Iso_dh PF00180.15 gi|385804085|ref|YP_005840485.1| - 7.9e-89 298.0 0.1 8.8e-89 297.8 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PTS-HPr PF00381.14 gi|385804086|ref|YP_005840486.1| - 4.4e-29 100.1 0.0 4.9e-29 100.0 0.0 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site PEP-utilizers_C PF02896.13 gi|385804087|ref|YP_005840487.1| - 1.6e-96 322.6 0.0 2.5e-96 322.0 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilisers_N PF05524.8 gi|385804087|ref|YP_005840487.1| - 2.7e-27 94.9 0.6 5.3e-27 94.0 0.0 1.8 2 0 0 2 2 2 1 PEP-utilising enzyme, N-terminal PEP-utilizers PF00391.18 gi|385804087|ref|YP_005840487.1| - 1.9e-23 81.7 0.4 4.8e-23 80.5 0.3 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain F_bP_aldolase PF01116.15 gi|385804088|ref|YP_005840488.1| - 3.1e-85 285.7 0.0 3.5e-85 285.6 0.0 1.0 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-II TIM-br_sig_trns PF09370.5 gi|385804088|ref|YP_005840488.1| - 0.1 11.6 0.0 0.31 10.0 0.0 1.7 1 1 1 2 2 2 0 TIM-barrel signal transduction protein Acetyltransf_1 PF00583.19 gi|385804089|ref|YP_005840489.1| - 1.1e-11 44.5 0.0 2.6e-11 43.3 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|385804089|ref|YP_005840489.1| - 3.1e-11 43.2 0.0 5.3e-11 42.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|385804089|ref|YP_005840489.1| - 5.5e-11 42.6 0.0 7.4e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|385804089|ref|YP_005840489.1| - 5.5e-07 29.2 0.0 1e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|385804089|ref|YP_005840489.1| - 0.00019 21.3 0.0 0.0062 16.3 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|385804089|ref|YP_005840489.1| - 0.0014 18.5 0.0 0.0027 17.6 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|385804089|ref|YP_005840489.1| - 0.007 16.3 0.0 0.016 15.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|385804089|ref|YP_005840489.1| - 0.016 15.1 0.0 0.028 14.3 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|385804089|ref|YP_005840489.1| - 0.068 13.0 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase NTS_2 PF15448.1 gi|385804089|ref|YP_005840489.1| - 0.36 11.1 1.9 0.72 10.1 1.3 1.5 1 0 0 1 1 1 0 N-terminal segments of P. falciparum erythrocyte membrane protein TrmB PF01978.14 gi|385804090|ref|YP_005840490.1| - 0.0054 16.4 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|385804090|ref|YP_005840490.1| - 0.0099 15.6 0.2 0.017 14.8 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|385804090|ref|YP_005840490.1| - 0.1 12.1 0.1 0.19 11.3 0.1 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain IF-2B PF01008.12 gi|385804091|ref|YP_005840491.1| - 6.8e-43 146.6 2.5 8.2e-43 146.4 1.7 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF3584 PF12128.3 gi|385804091|ref|YP_005840491.1| - 0.028 11.7 2.1 0.031 11.6 1.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Adaptin_N PF01602.15 gi|385804091|ref|YP_005840491.1| - 0.07 11.4 0.8 0.24 9.6 0.2 1.8 1 1 0 2 2 2 0 Adaptin N terminal region Seryl_tRNA_N PF02403.17 gi|385804091|ref|YP_005840491.1| - 0.12 12.4 0.7 0.23 11.4 0.5 1.6 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain CHDCT2 PF08074.6 gi|385804092|ref|YP_005840492.1| - 0.014 15.1 0.2 0.029 14.1 0.0 1.6 1 1 1 2 2 2 0 CHDCT2 (NUC038) domain Neisseria_TspB PF05616.8 gi|385804092|ref|YP_005840492.1| - 0.21 9.9 6.0 0.25 9.6 4.2 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein Trypan_PARP PF05887.6 gi|385804092|ref|YP_005840492.1| - 0.29 10.9 3.2 0.43 10.4 2.2 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) SpoIIIAH PF12685.2 gi|385804092|ref|YP_005840492.1| - 10 5.5 13.5 23 4.4 9.4 1.6 1 1 0 1 1 1 0 SpoIIIAH-like protein AAA PF00004.24 gi|385804094|ref|YP_005840494.1| - 5e-99 327.6 0.0 3.4e-48 163.1 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|385804094|ref|YP_005840494.1| - 1e-22 79.8 0.1 5e-22 77.6 0.1 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|385804094|ref|YP_005840494.1| - 1.1e-18 67.7 0.1 2e-08 34.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|385804094|ref|YP_005840494.1| - 1.4e-16 60.2 0.0 2.9e-08 33.0 0.0 2.7 3 0 0 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|385804094|ref|YP_005840494.1| - 2.1e-15 57.2 0.2 9.2e-09 35.5 0.0 3.6 3 1 0 3 3 3 2 AAA ATPase domain CDC48_2 PF02933.12 gi|385804094|ref|YP_005840494.1| - 2.9e-15 55.6 0.1 6.6e-15 54.5 0.1 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.1 gi|385804094|ref|YP_005840494.1| - 2.7e-12 46.9 0.1 0.00042 20.4 0.0 3.8 2 2 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|385804094|ref|YP_005840494.1| - 3.8e-11 42.9 0.0 0.00018 21.3 0.0 2.7 3 0 0 3 3 2 2 AAA domain AAA_5 PF07728.9 gi|385804094|ref|YP_005840494.1| - 5.7e-11 42.3 0.4 0.00054 19.7 0.0 4.5 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|385804094|ref|YP_005840494.1| - 5.7e-11 43.2 0.3 0.00016 22.4 0.1 2.9 2 1 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|385804094|ref|YP_005840494.1| - 1.4e-10 41.2 0.0 0.00051 19.9 0.0 2.7 2 1 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|385804094|ref|YP_005840494.1| - 3.5e-10 39.1 0.0 0.00014 20.7 0.0 2.4 2 0 0 2 2 2 2 TIP49 C-terminus Zeta_toxin PF06414.7 gi|385804094|ref|YP_005840494.1| - 1.5e-09 37.2 0.0 0.0017 17.4 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin AAA_19 PF13245.1 gi|385804094|ref|YP_005840494.1| - 3.5e-09 36.2 0.0 0.00072 19.2 0.0 2.9 2 0 0 2 2 2 2 Part of AAA domain IstB_IS21 PF01695.12 gi|385804094|ref|YP_005840494.1| - 2.6e-08 33.4 0.0 0.0031 16.9 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|385804094|ref|YP_005840494.1| - 5.4e-08 32.9 0.0 0.012 15.8 0.0 2.7 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.16 gi|385804094|ref|YP_005840494.1| - 6.5e-08 31.9 0.2 0.0022 17.1 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|385804094|ref|YP_005840494.1| - 4.2e-07 30.0 0.0 0.024 14.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.6 gi|385804094|ref|YP_005840494.1| - 9.3e-07 28.5 0.0 0.009 15.6 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|385804094|ref|YP_005840494.1| - 9.6e-07 29.1 0.1 0.01 16.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|385804094|ref|YP_005840494.1| - 3e-06 26.7 0.0 0.062 12.7 0.0 3.1 3 0 0 3 3 3 2 Sigma-54 interaction domain ABC_tran PF00005.22 gi|385804094|ref|YP_005840494.1| - 4.2e-06 27.1 0.0 0.077 13.2 0.0 2.7 2 0 0 2 2 2 2 ABC transporter AAA_11 PF13086.1 gi|385804094|ref|YP_005840494.1| - 4.4e-06 26.4 0.0 0.035 13.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.1 gi|385804094|ref|YP_005840494.1| - 5.3e-06 26.5 0.0 0.087 12.8 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain DUF815 PF05673.8 gi|385804094|ref|YP_005840494.1| - 6.6e-06 25.2 0.0 0.016 14.1 0.0 2.7 2 1 0 2 2 2 2 Protein of unknown function (DUF815) NACHT PF05729.7 gi|385804094|ref|YP_005840494.1| - 6.9e-06 25.8 0.1 0.18 11.4 0.0 3.7 4 0 0 4 4 4 2 NACHT domain NB-ARC PF00931.17 gi|385804094|ref|YP_005840494.1| - 7.4e-06 25.0 0.0 0.091 11.5 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain PhoH PF02562.11 gi|385804094|ref|YP_005840494.1| - 1e-05 24.8 0.2 0.1 11.8 0.0 2.8 3 0 0 3 3 2 2 PhoH-like protein AAA_25 PF13481.1 gi|385804094|ref|YP_005840494.1| - 1.4e-05 24.6 6.9 1.1 8.5 0.1 4.5 3 2 1 5 5 4 3 AAA domain DUF2075 PF09848.4 gi|385804094|ref|YP_005840494.1| - 3.1e-05 23.1 0.0 0.054 12.4 0.0 2.5 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Arch_ATPase PF01637.13 gi|385804094|ref|YP_005840494.1| - 3.1e-05 23.7 0.0 0.45 10.1 0.0 3.2 2 1 1 3 3 3 2 Archaeal ATPase KaiC PF06745.8 gi|385804094|ref|YP_005840494.1| - 5.6e-05 22.3 0.1 1.1 8.2 0.0 3.4 2 1 1 3 3 3 2 KaiC AAA_24 PF13479.1 gi|385804094|ref|YP_005840494.1| - 5.7e-05 22.7 0.0 0.035 13.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain Parvo_NS1 PF01057.12 gi|385804094|ref|YP_005840494.1| - 6.5e-05 21.9 0.0 0.18 10.6 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_30 PF13604.1 gi|385804094|ref|YP_005840494.1| - 0.00014 21.5 0.0 0.51 9.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain NTPase_1 PF03266.10 gi|385804094|ref|YP_005840494.1| - 0.00019 21.1 1.1 0.83 9.3 0.0 3.6 2 2 1 3 3 3 2 NTPase UPF0079 PF02367.12 gi|385804094|ref|YP_005840494.1| - 0.00058 19.4 0.0 0.85 9.2 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 SKI PF01202.17 gi|385804094|ref|YP_005840494.1| - 0.001 18.9 0.0 1.4 8.7 0.0 2.5 2 0 0 2 2 2 1 Shikimate kinase ATP-synt_ab PF00006.20 gi|385804094|ref|YP_005840494.1| - 0.0011 18.5 0.0 0.41 10.0 0.0 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain T2SE PF00437.15 gi|385804094|ref|YP_005840494.1| - 0.0013 17.6 0.0 1.1 8.0 0.0 2.5 2 0 0 2 2 2 2 Type II/IV secretion system protein Bac_DnaA PF00308.13 gi|385804094|ref|YP_005840494.1| - 0.0014 18.3 0.0 0.39 10.3 0.0 2.5 2 1 0 2 2 2 1 Bacterial dnaA protein ResIII PF04851.10 gi|385804094|ref|YP_005840494.1| - 0.0023 17.8 0.0 2.5 7.8 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Guanylate_kin PF00625.16 gi|385804094|ref|YP_005840494.1| - 0.0046 16.4 0.4 7.7 5.9 0.0 3.9 2 2 2 4 4 3 0 Guanylate kinase Cytidylate_kin2 PF13189.1 gi|385804094|ref|YP_005840494.1| - 0.011 15.6 0.1 0.54 10.1 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase-like family AFG1_ATPase PF03969.11 gi|385804094|ref|YP_005840494.1| - 0.012 14.4 0.0 3.2 6.4 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase KTI12 PF08433.5 gi|385804094|ref|YP_005840494.1| - 0.04 13.1 0.2 8.6 5.4 0.0 2.6 3 0 0 3 3 2 0 Chromatin associated protein KTI12 CPT PF07931.7 gi|385804094|ref|YP_005840494.1| - 0.043 13.4 0.0 3.4 7.2 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Torsin PF06309.6 gi|385804094|ref|YP_005840494.1| - 0.046 13.6 0.0 2.8 7.8 0.0 2.5 2 0 0 2 2 2 0 Torsin DEAD PF00270.24 gi|385804094|ref|YP_005840494.1| - 0.075 12.5 0.9 20 4.5 0.1 3.3 2 2 1 4 4 3 0 DEAD/DEAH box helicase Vps4_C PF09336.5 gi|385804094|ref|YP_005840494.1| - 0.081 12.8 0.0 6.8 6.6 0.0 2.9 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain MobB PF03205.9 gi|385804094|ref|YP_005840494.1| - 0.091 12.4 0.3 26 4.4 0.0 3.4 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B Viral_helicase1 PF01443.13 gi|385804094|ref|YP_005840494.1| - 0.099 12.1 0.0 7.7 5.9 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_23 PF13476.1 gi|385804094|ref|YP_005840494.1| - 0.1 12.9 0.1 23 5.2 0.0 3.0 3 0 0 3 3 2 0 AAA domain AhpC-TSA PF00578.16 gi|385804095|ref|YP_005840495.1| - 1.9e-33 114.7 0.0 2.3e-33 114.5 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|385804095|ref|YP_005840495.1| - 2.4e-20 72.5 0.0 2.8e-20 72.3 0.0 1.0 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.7 gi|385804095|ref|YP_005840495.1| - 0.014 14.8 0.0 0.015 14.6 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) DNA_primase_S PF01896.14 gi|385804097|ref|YP_005840497.1| - 6e-25 87.7 0.0 1.1e-24 86.9 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit Histidinol_dh PF00815.15 gi|385804098|ref|YP_005840498.1| - 3.7e-144 480.3 5.2 4.4e-144 480.1 3.6 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase SIP PF04954.8 gi|385804098|ref|YP_005840498.1| - 0.47 10.8 3.8 0.52 10.6 1.4 2.1 2 0 0 2 2 2 0 Siderophore-interacting protein Fe-S_biosyn PF01521.15 gi|385804099|ref|YP_005840499.1| - 3.1e-18 65.7 0.0 3.5e-18 65.5 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis 5_nucleotid_C PF02872.13 gi|385804101|ref|YP_005840501.1| - 2.6e-29 102.2 0.0 4.5e-29 101.4 0.0 1.4 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos_2 PF12850.2 gi|385804101|ref|YP_005840501.1| - 4.4e-05 23.3 3.5 0.00098 18.9 1.1 2.7 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|385804101|ref|YP_005840501.1| - 5.1e-05 22.7 0.0 8.7e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Usp PF00582.21 gi|385804102|ref|YP_005840502.1| - 1e-09 38.7 2.0 1.9e-09 37.8 1.4 1.6 1 1 0 1 1 1 1 Universal stress protein family MS_channel PF00924.13 gi|385804103|ref|YP_005840503.1| - 9.4e-37 126.3 0.1 1.4e-36 125.8 0.1 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel Colicin_V PF02674.11 gi|385804103|ref|YP_005840503.1| - 0.099 12.4 8.7 0.17 11.7 6.0 1.3 1 0 0 1 1 1 0 Colicin V production protein EI24 PF07264.6 gi|385804103|ref|YP_005840503.1| - 0.72 9.2 7.9 1.2 8.5 5.5 1.2 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) Regulator_TrmB PF11495.3 gi|385804104|ref|YP_005840504.1| - 6.4e-74 247.8 1.1 1.2e-73 246.9 0.5 1.6 2 0 0 2 2 2 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|385804104|ref|YP_005840504.1| - 1.2e-20 72.9 0.0 2.6e-20 71.8 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|385804104|ref|YP_005840504.1| - 8.1e-06 25.5 0.1 2.1e-05 24.2 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|385804104|ref|YP_005840504.1| - 8.8e-06 25.3 0.1 2.3e-05 23.9 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|385804104|ref|YP_005840504.1| - 0.00011 21.6 0.1 0.00024 20.6 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|385804104|ref|YP_005840504.1| - 0.0014 18.0 0.0 0.0042 16.4 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|385804104|ref|YP_005840504.1| - 0.0044 17.1 0.0 0.011 15.8 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_5 PF01022.15 gi|385804104|ref|YP_005840504.1| - 0.0055 16.3 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF2250 PF10007.4 gi|385804104|ref|YP_005840504.1| - 0.0071 16.2 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_CodY PF08222.6 gi|385804104|ref|YP_005840504.1| - 0.061 12.6 0.0 0.2 11.0 0.0 1.9 1 0 0 1 1 1 0 CodY helix-turn-helix domain Sigma70_r4 PF04545.11 gi|385804104|ref|YP_005840504.1| - 0.094 12.0 0.1 5.2 6.4 0.0 2.9 2 1 0 2 2 2 0 Sigma-70, region 4 Phage_rep_org_N PF09681.5 gi|385804104|ref|YP_005840504.1| - 0.14 11.6 0.0 0.33 10.5 0.0 1.6 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) Baculo_LEF-11 PF06385.7 gi|385804105|ref|YP_005840505.1| - 0.1 12.7 0.3 0.23 11.5 0.2 1.6 1 1 0 1 1 1 0 Baculovirus LEF-11 protein AAA PF00004.24 gi|385804106|ref|YP_005840506.1| - 1.1e-11 45.0 0.0 3.7e-11 43.3 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|385804106|ref|YP_005840506.1| - 1.5e-06 28.3 0.3 7.5e-06 26.1 0.1 2.2 2 1 0 2 2 1 1 AAA domain IstB_IS21 PF01695.12 gi|385804106|ref|YP_005840506.1| - 9.7e-06 25.1 0.1 0.00011 21.7 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_17 PF13207.1 gi|385804106|ref|YP_005840506.1| - 1.5e-05 25.8 0.8 0.00014 22.6 0.5 2.6 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|385804106|ref|YP_005840506.1| - 2.4e-05 23.4 0.0 5.1e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|385804106|ref|YP_005840506.1| - 0.0002 21.1 0.1 0.0054 16.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|385804106|ref|YP_005840506.1| - 0.00059 19.7 0.1 0.002 18.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|385804106|ref|YP_005840506.1| - 0.00066 19.6 0.0 0.002 18.1 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|385804106|ref|YP_005840506.1| - 0.00094 19.2 0.9 0.017 15.1 0.6 2.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|385804106|ref|YP_005840506.1| - 0.0025 18.1 0.1 0.019 15.2 0.0 2.4 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|385804106|ref|YP_005840506.1| - 0.0025 17.6 0.0 0.0071 16.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|385804106|ref|YP_005840506.1| - 0.003 16.6 0.0 0.0066 15.5 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin Rad17 PF03215.10 gi|385804106|ref|YP_005840506.1| - 0.0048 15.6 0.0 0.44 9.1 0.0 2.9 1 1 1 2 2 2 1 Rad17 cell cycle checkpoint protein NACHT PF05729.7 gi|385804106|ref|YP_005840506.1| - 0.0051 16.4 0.1 0.2 11.2 0.0 2.3 1 1 0 1 1 1 1 NACHT domain Viral_helicase1 PF01443.13 gi|385804106|ref|YP_005840506.1| - 0.008 15.7 0.0 0.016 14.7 0.0 1.5 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase RNA_helicase PF00910.17 gi|385804106|ref|YP_005840506.1| - 0.025 14.7 0.0 0.059 13.5 0.0 1.7 1 0 0 1 1 1 0 RNA helicase DUF258 PF03193.11 gi|385804106|ref|YP_005840506.1| - 0.053 12.7 0.0 0.09 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|385804106|ref|YP_005840506.1| - 0.078 12.7 2.1 0.23 11.2 0.4 2.6 2 1 0 2 2 2 0 Part of AAA domain Bac_DnaA PF00308.13 gi|385804106|ref|YP_005840506.1| - 0.094 12.3 0.0 1.2 8.7 0.0 2.4 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_3 PF07726.6 gi|385804106|ref|YP_005840506.1| - 0.12 11.9 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|385804107|ref|YP_005840507.1| - 1.1e-36 126.1 0.1 1.4e-36 125.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385804107|ref|YP_005840507.1| - 4.7e-12 46.4 0.0 1.7e-05 24.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|385804107|ref|YP_005840507.1| - 1.9e-10 40.3 0.2 1.5e-09 37.3 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|385804107|ref|YP_005840507.1| - 1.7e-06 27.6 0.0 0.0031 16.9 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_16 PF13191.1 gi|385804107|ref|YP_005840507.1| - 1.1e-05 25.5 0.2 2e-05 24.6 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|385804107|ref|YP_005840507.1| - 3.6e-05 23.2 0.0 7.2e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|385804107|ref|YP_005840507.1| - 5.7e-05 23.2 0.1 0.00026 21.1 0.0 2.2 2 1 0 2 2 1 1 AAA domain DUF258 PF03193.11 gi|385804107|ref|YP_005840507.1| - 0.00017 20.8 0.0 0.00028 20.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 ABC_ATPase PF09818.4 gi|385804107|ref|YP_005840507.1| - 0.00026 19.6 0.1 0.92 8.0 0.0 2.9 3 0 0 3 3 3 2 Predicted ATPase of the ABC class Arch_ATPase PF01637.13 gi|385804107|ref|YP_005840507.1| - 0.00034 20.3 0.0 0.0032 17.2 0.0 2.2 1 1 0 1 1 1 1 Archaeal ATPase AAA_23 PF13476.1 gi|385804107|ref|YP_005840507.1| - 0.00039 20.7 0.2 0.00093 19.5 0.0 1.6 1 1 1 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|385804107|ref|YP_005840507.1| - 0.00044 19.9 0.0 0.002 17.8 0.0 2.2 1 1 1 2 2 2 1 Part of AAA domain AAA_30 PF13604.1 gi|385804107|ref|YP_005840507.1| - 0.0019 17.8 0.0 0.0048 16.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain DUF3987 PF13148.1 gi|385804107|ref|YP_005840507.1| - 0.0045 15.5 0.0 0.0067 15.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3987) AAA_14 PF13173.1 gi|385804107|ref|YP_005840507.1| - 0.0055 16.6 0.0 0.042 13.7 0.0 2.4 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|385804107|ref|YP_005840507.1| - 0.0056 15.5 0.0 0.057 12.2 0.0 2.3 2 1 1 3 3 3 1 NB-ARC domain AAA_33 PF13671.1 gi|385804107|ref|YP_005840507.1| - 0.0089 15.9 0.1 0.022 14.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|385804107|ref|YP_005840507.1| - 0.01 16.6 0.6 0.02 15.7 0.4 1.7 1 1 0 1 1 1 0 AAA domain MutS_V PF00488.16 gi|385804107|ref|YP_005840507.1| - 0.011 15.1 0.0 0.022 14.1 0.0 1.5 1 0 0 1 1 1 0 MutS domain V MMR_HSR1 PF01926.18 gi|385804107|ref|YP_005840507.1| - 0.012 15.6 0.0 0.034 14.0 0.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_5 PF07728.9 gi|385804107|ref|YP_005840507.1| - 0.012 15.3 0.0 1.9 8.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|385804107|ref|YP_005840507.1| - 0.013 14.9 0.3 0.044 13.1 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA PF00004.24 gi|385804107|ref|YP_005840507.1| - 0.013 15.6 0.2 0.72 10.0 0.0 2.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|385804107|ref|YP_005840507.1| - 0.016 15.0 0.2 0.18 11.7 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.7 gi|385804107|ref|YP_005840507.1| - 0.028 14.0 0.0 0.084 12.5 0.0 1.8 2 0 0 2 2 1 0 NACHT domain MobB PF03205.9 gi|385804107|ref|YP_005840507.1| - 0.03 14.0 0.0 0.066 12.9 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.7 gi|385804107|ref|YP_005840507.1| - 0.035 13.1 0.0 0.054 12.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_13 PF13166.1 gi|385804107|ref|YP_005840507.1| - 0.039 12.4 0.0 0.25 9.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|385804107|ref|YP_005840507.1| - 0.043 14.1 0.0 0.071 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|385804107|ref|YP_005840507.1| - 0.05 13.3 0.0 0.37 10.4 0.0 2.3 1 1 0 1 1 1 0 NTPase T2SE PF00437.15 gi|385804107|ref|YP_005840507.1| - 0.062 12.1 0.0 0.098 11.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein cobW PF02492.14 gi|385804107|ref|YP_005840507.1| - 0.083 12.3 0.0 0.17 11.3 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain IstB_IS21 PF01695.12 gi|385804107|ref|YP_005840507.1| - 0.11 11.8 0.0 0.29 10.5 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein Adeno_IVa2 PF02456.10 gi|385804107|ref|YP_005840507.1| - 0.17 10.4 0.0 0.38 9.3 0.0 1.5 2 0 0 2 2 2 0 Adenovirus IVa2 protein BPD_transp_1 PF00528.17 gi|385804108|ref|YP_005840508.1| - 1.5e-17 63.7 7.1 1.5e-17 63.7 4.9 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component MS_channel PF00924.13 gi|385804108|ref|YP_005840508.1| - 0.55 9.5 8.7 0.88 8.8 6.0 1.3 1 0 0 1 1 1 0 Mechanosensitive ion channel SBP_bac_3 PF00497.15 gi|385804109|ref|YP_005840509.1| - 7e-65 218.4 0.7 8.5e-65 218.1 0.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|385804109|ref|YP_005840509.1| - 0.0022 17.5 0.0 0.0033 17.0 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|385804109|ref|YP_005840509.1| - 0.0047 16.3 0.1 0.038 13.3 0.1 2.7 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein TAT_signal PF10518.4 gi|385804109|ref|YP_005840509.1| - 0.014 15.3 0.1 0.028 14.4 0.0 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence COX15-CtaA PF02628.10 gi|385804110|ref|YP_005840510.1| - 4.2e-29 101.3 34.7 2.2e-27 95.7 24.1 2.2 1 1 0 1 1 1 1 Cytochrome oxidase assembly protein VKOR PF07884.9 gi|385804110|ref|YP_005840510.1| - 0.014 15.2 2.5 0.014 15.2 1.7 3.6 2 1 2 4 4 4 0 Vitamin K epoxide reductase family Hum_adeno_E3A PF05393.6 gi|385804110|ref|YP_005840510.1| - 1.1 9.0 3.9 1 9.0 0.2 2.6 2 1 1 3 3 3 0 Human adenovirus early E3A glycoprotein Peptidase_M24 PF00557.19 gi|385804111|ref|YP_005840511.1| - 7.9e-13 48.4 2.2 1.3e-12 47.7 1.5 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|385804111|ref|YP_005840511.1| - 0.00011 22.7 0.1 0.00039 20.9 0.0 2.0 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain DUF2125 PF09898.4 gi|385804111|ref|YP_005840511.1| - 0.061 12.6 1.4 0.099 11.9 0.5 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2125) PTA_PTB PF01515.14 gi|385804112|ref|YP_005840512.1| - 6.9e-95 317.7 0.0 9.6e-95 317.2 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase Malic_M PF03949.10 gi|385804112|ref|YP_005840512.1| - 2.2e-69 233.8 0.9 2.2e-69 233.8 0.6 1.6 2 0 0 2 2 2 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|385804112|ref|YP_005840512.1| - 1e-28 100.1 0.0 3.4e-26 91.9 0.0 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain RNase_H PF00075.19 gi|385804113|ref|YP_005840513.1| - 0.0085 16.4 0.0 0.014 15.7 0.0 1.3 1 0 0 1 1 1 1 RNase H EamA PF00892.15 gi|385804114|ref|YP_005840514.1| - 2e-31 108.6 35.9 4e-17 62.4 11.4 2.4 2 1 0 2 2 2 2 EamA-like transporter family DUF914 PF06027.7 gi|385804114|ref|YP_005840514.1| - 0.0012 17.7 7.4 0.0019 17.0 5.1 1.3 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF914) TPT PF03151.11 gi|385804114|ref|YP_005840514.1| - 0.0062 16.1 9.2 0.0062 16.1 6.3 2.6 3 0 0 3 3 3 2 Triose-phosphate Transporter family MitoNEET_N PF10660.4 gi|385804114|ref|YP_005840514.1| - 0.53 10.1 2.6 6.2 6.7 0.2 3.4 3 0 0 3 3 3 0 Iron-containing outer mitochondrial membrane protein N-terminus Cytidylate_kin2 PF13189.1 gi|385804116|ref|YP_005840516.1| - 3e-20 72.8 0.1 2.4e-19 69.9 0.0 1.9 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|385804116|ref|YP_005840516.1| - 5.1e-18 65.6 0.0 6.8e-18 65.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|385804116|ref|YP_005840516.1| - 1.5e-09 38.7 0.2 1.9e-09 38.3 0.1 1.3 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|385804116|ref|YP_005840516.1| - 5.3e-05 23.2 0.5 0.00035 20.5 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|385804116|ref|YP_005840516.1| - 7.1e-05 22.7 0.1 0.00018 21.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|385804116|ref|YP_005840516.1| - 0.00033 20.5 0.0 0.0011 18.8 0.0 1.8 2 0 0 2 2 2 1 Adenylate kinase AAA PF00004.24 gi|385804116|ref|YP_005840516.1| - 0.00062 19.9 0.0 0.0016 18.6 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SKI PF01202.17 gi|385804116|ref|YP_005840516.1| - 0.0009 19.1 0.5 0.0077 16.1 0.3 2.0 1 1 0 1 1 1 1 Shikimate kinase AAA_19 PF13245.1 gi|385804116|ref|YP_005840516.1| - 0.0056 16.4 0.0 0.01 15.5 0.0 1.6 1 1 0 1 1 1 1 Part of AAA domain RHH_4 PF13467.1 gi|385804116|ref|YP_005840516.1| - 0.025 14.4 0.1 0.071 12.9 0.1 1.8 1 1 0 1 1 1 0 Ribbon-helix-helix domain Cytidylate_kin PF02224.13 gi|385804116|ref|YP_005840516.1| - 0.033 13.6 0.1 0.052 12.9 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase DUF1684 PF07920.6 gi|385804117|ref|YP_005840517.1| - 3.6e-56 188.9 0.2 1.2e-55 187.2 0.2 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF1684) SdpI PF13630.1 gi|385804118|ref|YP_005840518.1| - 0.073 12.7 1.3 0.084 12.5 0.9 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF973 PF06157.6 gi|385804118|ref|YP_005840518.1| - 0.12 11.3 0.7 0.13 11.2 0.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF872 PF05915.7 gi|385804118|ref|YP_005840518.1| - 1 9.2 3.1 8.2 6.3 1.8 1.9 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) Ribosomal_S10 PF00338.17 gi|385804119|ref|YP_005840519.1| - 2.9e-12 46.2 0.0 3.5e-12 46.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e Peptidase_M20 PF01546.23 gi|385804120|ref|YP_005840520.1| - 7.8e-14 51.6 12.1 1.9e-07 30.8 5.5 3.1 2 1 0 2 2 2 2 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|385804120|ref|YP_005840520.1| - 3.4e-13 49.3 0.8 3.4e-13 49.3 0.5 2.1 2 0 0 2 2 2 1 Peptidase dimerisation domain DUF1761 PF08570.5 gi|385804121|ref|YP_005840521.1| - 0.24 11.4 3.7 0.25 11.3 2.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1761) PhoU PF01895.14 gi|385804122|ref|YP_005840522.1| - 2.8e-10 40.5 7.0 6.6e-10 39.2 0.1 2.8 2 1 0 2 2 2 1 PhoU domain Antitoxin-MazE PF04014.13 gi|385804122|ref|YP_005840522.1| - 1.5e-06 27.7 0.0 2.9e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE NAD_kinase PF01513.16 gi|385804123|ref|YP_005840523.1| - 5e-43 146.9 0.3 5.7e-43 146.7 0.2 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|385804123|ref|YP_005840523.1| - 1.8e-05 24.1 1.7 8e-05 22.0 0.0 2.6 3 0 0 3 3 3 1 Diacylglycerol kinase catalytic domain DeoRC PF00455.17 gi|385804123|ref|YP_005840523.1| - 0.19 11.3 1.1 14 5.2 0.1 2.2 2 0 0 2 2 2 0 DeoR C terminal sensor domain SMP PF04927.7 gi|385804123|ref|YP_005840523.1| - 6.6 6.7 10.9 0.61 10.0 1.0 3.1 3 0 0 3 3 3 0 Seed maturation protein zf-ribbon_3 PF13248.1 gi|385804124|ref|YP_005840524.1| - 0.00033 19.7 0.3 0.00055 19.0 0.2 1.4 1 1 0 1 1 1 1 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|385804124|ref|YP_005840524.1| - 0.0062 16.1 1.1 0.04 13.6 0.8 2.0 1 1 0 1 1 1 1 Nudix N-terminal DZR PF12773.2 gi|385804124|ref|YP_005840524.1| - 0.0063 16.3 0.8 0.012 15.3 0.5 1.5 1 1 0 1 1 1 1 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|385804124|ref|YP_005840524.1| - 0.013 15.0 2.2 0.13 11.8 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.4 gi|385804124|ref|YP_005840524.1| - 0.015 15.0 1.5 0.51 10.0 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|385804124|ref|YP_005840524.1| - 0.024 14.2 0.4 1 9.0 0.0 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|385804124|ref|YP_005840524.1| - 0.032 13.7 1.7 3.5 7.2 0.1 2.3 2 1 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|385804124|ref|YP_005840524.1| - 4 7.3 5.2 4.4 7.2 0.4 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain PAS_9 PF13426.1 gi|385804125|ref|YP_005840525.1| - 3.8e-06 27.2 0.0 1.4e-05 25.3 0.0 2.0 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|385804125|ref|YP_005840525.1| - 0.00019 21.4 0.0 0.00047 20.1 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|385804125|ref|YP_005840525.1| - 0.00093 18.9 0.0 0.0034 17.1 0.0 1.9 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|385804125|ref|YP_005840525.1| - 0.0015 18.2 0.0 0.0045 16.7 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c PF02518.21 gi|385804125|ref|YP_005840525.1| - 0.043 13.5 0.1 0.13 11.9 0.1 2.0 1 1 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DHHW PF14286.1 gi|385804125|ref|YP_005840525.1| - 0.47 9.7 6.2 0.056 12.7 1.3 1.6 2 0 0 2 2 2 0 DHHW protein HTH_10 PF04967.7 gi|385804126|ref|YP_005840526.1| - 2.1e-19 68.8 0.0 4.7e-19 67.7 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Response_reg PF00072.19 gi|385804126|ref|YP_005840526.1| - 2.4e-15 56.5 1.6 6.5e-15 55.1 1.1 1.8 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.1 gi|385804126|ref|YP_005840526.1| - 0.0073 16.8 0.0 0.018 15.5 0.0 1.7 1 0 0 1 1 1 1 GAF domain Borrelia_lipo_2 PF06238.6 gi|385804126|ref|YP_005840526.1| - 0.012 15.6 0.2 0.079 13.0 0.0 2.4 2 1 0 2 2 2 0 Borrelia burgdorferi BBR25 lipoprotein HalX PF08663.5 gi|385804126|ref|YP_005840526.1| - 0.016 15.1 1.4 0.076 13.0 1.0 2.2 1 0 0 1 1 1 0 HalX domain Baculo_PEP_C PF04513.7 gi|385804126|ref|YP_005840526.1| - 1.6 8.5 7.7 12 5.7 1.5 2.9 2 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Response_reg PF00072.19 gi|385804127|ref|YP_005840527.1| - 1.9e-12 47.1 0.3 8.2e-12 45.1 0.2 1.9 1 1 0 1 1 1 1 Response regulator receiver domain C1_1 PF00130.17 gi|385804128|ref|YP_005840528.1| - 0.0074 15.9 0.3 0.71 9.6 0.0 2.1 2 0 0 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Rpr2 PF04032.11 gi|385804128|ref|YP_005840528.1| - 0.017 14.9 0.9 0.021 14.6 0.6 1.2 1 0 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain DZR PF12773.2 gi|385804128|ref|YP_005840528.1| - 0.018 14.8 2.3 0.036 13.8 1.6 1.5 1 1 0 1 1 1 0 Double zinc ribbon ADK_lid PF05191.9 gi|385804128|ref|YP_005840528.1| - 0.039 13.6 0.5 1.7 8.3 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-dskA_traR PF01258.12 gi|385804128|ref|YP_005840528.1| - 0.051 13.3 2.3 0.14 11.9 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Ecl1 PF12855.2 gi|385804128|ref|YP_005840528.1| - 0.075 12.3 0.9 2.4 7.5 0.0 2.2 2 0 0 2 2 2 0 Life-span regulatory factor zf-DNL PF05180.7 gi|385804128|ref|YP_005840528.1| - 0.096 12.4 2.9 1.3 8.7 0.1 2.6 1 1 2 3 3 3 0 DNL zinc finger NOB1_Zn_bind PF08772.6 gi|385804128|ref|YP_005840528.1| - 0.11 12.3 1.1 1.1 9.1 0.1 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DAN PF03045.10 gi|385804128|ref|YP_005840528.1| - 0.13 11.6 1.4 0.14 11.5 1.0 1.1 1 0 0 1 1 1 0 DAN domain Copper-fist PF00649.13 gi|385804128|ref|YP_005840528.1| - 0.16 11.2 0.6 0.36 10.0 0.0 1.9 2 0 0 2 2 2 0 Copper fist DNA binding domain CpXC PF14353.1 gi|385804128|ref|YP_005840528.1| - 0.17 11.8 1.4 0.21 11.5 1.0 1.1 1 0 0 1 1 1 0 CpXC protein YhfH PF14149.1 gi|385804128|ref|YP_005840528.1| - 0.29 10.9 0.6 0.29 10.9 0.4 1.7 2 0 0 2 2 2 0 YhfH-like protein DEAD_assoc PF08494.6 gi|385804129|ref|YP_005840529.1| - 1.9e-39 135.3 0.4 5.2e-39 133.9 0.1 1.9 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.24 gi|385804129|ref|YP_005840529.1| - 2.2e-30 105.3 0.0 5e-28 97.6 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|385804129|ref|YP_005840529.1| - 5.8e-18 64.5 0.1 3.2e-17 62.1 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|385804129|ref|YP_005840529.1| - 5.5e-08 32.8 0.0 1e-07 31.9 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|385804129|ref|YP_005840529.1| - 0.016 14.9 0.0 0.099 12.4 0.0 2.5 1 0 0 1 1 1 0 Part of AAA domain AAA_11 PF13086.1 gi|385804129|ref|YP_005840529.1| - 0.092 12.3 0.0 1.4 8.4 0.0 2.3 1 1 1 2 2 2 0 AAA domain AAA PF00004.24 gi|385804130|ref|YP_005840530.1| - 5.4e-94 311.3 0.0 3.3e-46 156.7 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|385804130|ref|YP_005840530.1| - 2.2e-21 75.5 0.9 5.4e-21 74.3 0.1 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_16 PF13191.1 gi|385804130|ref|YP_005840530.1| - 3.4e-13 49.9 0.0 2.1e-05 24.5 0.0 3.4 2 1 0 2 2 2 2 AAA ATPase domain RuvB_N PF05496.7 gi|385804130|ref|YP_005840530.1| - 5e-13 48.6 0.1 1.1e-05 24.6 0.0 3.2 4 0 0 4 4 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|385804130|ref|YP_005840530.1| - 1.5e-12 47.7 0.0 1.6e-06 28.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|385804130|ref|YP_005840530.1| - 6.7e-11 43.0 0.0 8.6e-05 23.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|385804130|ref|YP_005840530.1| - 7.4e-11 42.3 0.1 0.002 18.2 0.0 4.1 2 2 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|385804130|ref|YP_005840530.1| - 2.9e-10 40.1 0.0 0.00048 20.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|385804130|ref|YP_005840530.1| - 3.8e-10 39.7 0.0 0.00016 21.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|385804130|ref|YP_005840530.1| - 4.4e-10 39.1 1.3 0.00074 19.2 0.1 3.5 2 0 0 2 2 2 2 Part of AAA domain AAA_5 PF07728.9 gi|385804130|ref|YP_005840530.1| - 8.2e-10 38.5 0.2 0.0016 18.2 0.0 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|385804130|ref|YP_005840530.1| - 4e-09 35.6 0.0 0.00022 20.0 0.0 2.2 2 0 0 2 2 2 2 TIP49 C-terminus Zeta_toxin PF06414.7 gi|385804130|ref|YP_005840530.1| - 1.5e-08 33.9 0.0 0.00065 18.8 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin AAA_28 PF13521.1 gi|385804130|ref|YP_005840530.1| - 1.1e-07 31.9 0.0 0.0091 15.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|385804130|ref|YP_005840530.1| - 1.1e-07 31.4 0.3 0.012 15.0 0.0 2.6 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|385804130|ref|YP_005840530.1| - 2e-06 28.1 0.0 0.04 14.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|385804130|ref|YP_005840530.1| - 3e-06 26.5 0.2 0.072 12.2 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI CDC48_2 PF02933.12 gi|385804130|ref|YP_005840530.1| - 3.4e-06 26.5 0.1 1.3e-05 24.7 0.1 2.0 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 RNA_helicase PF00910.17 gi|385804130|ref|YP_005840530.1| - 3.8e-06 27.0 0.0 0.063 13.4 0.0 2.8 3 0 0 3 3 2 2 RNA helicase AAA_3 PF07726.6 gi|385804130|ref|YP_005840530.1| - 5.1e-06 26.1 0.0 0.046 13.3 0.0 2.7 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|385804130|ref|YP_005840530.1| - 9.5e-06 25.9 0.0 0.12 12.6 0.0 2.7 2 0 0 2 2 2 2 ABC transporter AAA_25 PF13481.1 gi|385804130|ref|YP_005840530.1| - 2.5e-05 23.7 8.3 0.25 10.7 0.1 4.4 2 2 1 4 4 4 2 AAA domain Sigma54_activat PF00158.21 gi|385804130|ref|YP_005840530.1| - 3.2e-05 23.4 0.0 0.31 10.4 0.0 3.6 3 2 0 3 3 3 2 Sigma-54 interaction domain PhoH PF02562.11 gi|385804130|ref|YP_005840530.1| - 0.0001 21.6 0.2 0.43 9.7 0.0 2.7 2 0 0 2 2 2 2 PhoH-like protein Parvo_NS1 PF01057.12 gi|385804130|ref|YP_005840530.1| - 0.00013 20.9 0.0 0.35 9.7 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NACHT PF05729.7 gi|385804130|ref|YP_005840530.1| - 0.00014 21.5 0.1 1.9 8.1 0.0 3.4 3 0 0 3 3 3 2 NACHT domain DUF2075 PF09848.4 gi|385804130|ref|YP_005840530.1| - 0.00019 20.5 0.0 0.16 10.8 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.1 gi|385804130|ref|YP_005840530.1| - 0.0002 21.0 0.0 0.45 10.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.1 gi|385804130|ref|YP_005840530.1| - 0.00047 19.8 0.5 0.19 11.3 0.1 2.4 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|385804130|ref|YP_005840530.1| - 0.00055 19.5 0.0 0.51 9.8 0.0 2.8 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|385804130|ref|YP_005840530.1| - 0.00055 18.9 0.0 1.3 7.8 0.0 3.0 2 2 0 2 2 2 2 Protein of unknown function (DUF815) NB-ARC PF00931.17 gi|385804130|ref|YP_005840530.1| - 0.00062 18.7 0.0 0.18 10.6 0.0 2.2 2 0 0 2 2 2 1 NB-ARC domain Sigma54_activ_2 PF14532.1 gi|385804130|ref|YP_005840530.1| - 0.00089 19.3 0.0 1.1 9.3 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain UPF0079 PF02367.12 gi|385804130|ref|YP_005840530.1| - 0.0016 18.0 0.0 1.2 8.7 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Cytidylate_kin2 PF13189.1 gi|385804130|ref|YP_005840530.1| - 0.0026 17.6 0.0 0.18 11.6 0.0 2.4 2 0 0 2 2 2 1 Cytidylate kinase-like family KaiC PF06745.8 gi|385804130|ref|YP_005840530.1| - 0.0028 16.8 0.1 1.7 7.6 0.0 3.0 3 0 0 3 3 3 1 KaiC SKI PF01202.17 gi|385804130|ref|YP_005840530.1| - 0.0029 17.5 0.0 1.4 8.7 0.0 2.6 2 0 0 2 2 2 1 Shikimate kinase Arch_ATPase PF01637.13 gi|385804130|ref|YP_005840530.1| - 0.0033 17.1 0.0 5.6 6.5 0.0 3.2 2 2 2 4 4 4 0 Archaeal ATPase NTPase_1 PF03266.10 gi|385804130|ref|YP_005840530.1| - 0.0065 16.1 0.1 1.3 8.7 0.0 3.0 2 1 0 3 3 2 1 NTPase CPT PF07931.7 gi|385804130|ref|YP_005840530.1| - 0.007 16.0 0.0 0.27 10.8 0.0 2.5 2 0 0 2 2 2 1 Chloramphenicol phosphotransferase-like protein ResIII PF04851.10 gi|385804130|ref|YP_005840530.1| - 0.0076 16.0 0.0 3 7.6 0.0 2.7 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Viral_helicase1 PF01443.13 gi|385804130|ref|YP_005840530.1| - 0.016 14.7 0.0 0.81 9.1 0.0 2.8 3 0 0 3 3 3 0 Viral (Superfamily 1) RNA helicase Torsin PF06309.6 gi|385804130|ref|YP_005840530.1| - 0.082 12.7 0.0 2 8.3 0.0 2.4 2 0 0 2 2 2 0 Torsin Bac_DnaA PF00308.13 gi|385804130|ref|YP_005840530.1| - 0.15 11.6 0.0 25 4.4 0.0 2.4 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_23 PF13476.1 gi|385804130|ref|YP_005840530.1| - 0.16 12.3 0.1 20 5.4 0.0 2.6 2 0 0 2 2 2 0 AAA domain Peripla_BP_6 PF13458.1 gi|385804131|ref|YP_005840531.1| - 2.9e-46 158.4 5.3 5e-46 157.6 3.7 1.4 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|385804131|ref|YP_005840531.1| - 1.1e-28 100.0 1.0 1.3e-28 99.8 0.7 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|385804131|ref|YP_005840531.1| - 1.5e-15 56.8 1.9 7.2e-12 44.7 0.0 2.0 2 0 0 2 2 2 2 Periplasmic binding protein domain TAT_signal PF10518.4 gi|385804131|ref|YP_005840531.1| - 0.048 13.6 2.4 0.15 12.1 1.7 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_2 PF02653.11 gi|385804132|ref|YP_005840532.1| - 1.2e-34 119.5 42.3 1.5e-34 119.1 29.3 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF106 PF01956.11 gi|385804132|ref|YP_005840532.1| - 0.69 9.4 3.2 1.1 8.8 0.6 2.4 1 1 1 2 2 2 0 Integral membrane protein DUF106 BPD_transp_2 PF02653.11 gi|385804133|ref|YP_005840533.1| - 2.4e-47 161.1 32.7 2.8e-47 160.9 22.7 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component HCV_NS4a PF01006.15 gi|385804133|ref|YP_005840533.1| - 0.018 14.5 4.8 0.046 13.2 1.7 2.5 2 0 0 2 2 2 0 Hepatitis C virus non-structural protein NS4a Coa1 PF08695.5 gi|385804133|ref|YP_005840533.1| - 0.11 11.9 0.0 0.25 10.8 0.0 1.6 1 0 0 1 1 1 0 Cytochrome oxidase complex assembly protein 1 ABC_tran PF00005.22 gi|385804134|ref|YP_005840534.1| - 1.7e-34 119.0 0.0 2.3e-34 118.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385804134|ref|YP_005840534.1| - 7.6e-14 52.3 2.0 6.9e-12 45.9 1.4 2.1 1 1 0 1 1 1 1 AAA domain BCA_ABC_TP_C PF12399.3 gi|385804134|ref|YP_005840534.1| - 1.5e-07 30.9 0.0 2.6e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.1 gi|385804134|ref|YP_005840534.1| - 1.7e-06 28.5 1.7 2e-06 28.2 0.6 1.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|385804134|ref|YP_005840534.1| - 1.5e-05 24.4 0.2 2.9e-05 23.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|385804134|ref|YP_005840534.1| - 0.00029 20.8 0.8 0.4 10.6 0.1 2.2 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|385804134|ref|YP_005840534.1| - 0.0007 18.8 1.7 0.026 13.7 1.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|385804134|ref|YP_005840534.1| - 0.0016 17.6 0.1 0.0026 16.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|385804134|ref|YP_005840534.1| - 0.0054 15.8 0.2 0.59 9.1 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain MMR_HSR1 PF01926.18 gi|385804134|ref|YP_005840534.1| - 0.0081 16.1 0.1 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase Mg_chelatase PF01078.16 gi|385804134|ref|YP_005840534.1| - 0.092 11.8 0.0 0.16 11.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.1 gi|385804134|ref|YP_005840534.1| - 0.13 11.8 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|385804134|ref|YP_005840534.1| - 0.36 10.9 2.4 3.6 7.7 0.1 2.3 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|385804135|ref|YP_005840535.1| - 3.6e-30 105.0 0.0 5.4e-30 104.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385804135|ref|YP_005840535.1| - 1.8e-12 47.8 0.4 2.6e-05 24.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|385804135|ref|YP_005840535.1| - 9.4e-07 29.0 0.0 1.9e-06 28.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|385804135|ref|YP_005840535.1| - 1.3e-06 28.9 0.0 1.7e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|385804135|ref|YP_005840535.1| - 2.2e-06 27.3 0.1 0.012 15.0 0.0 2.1 1 1 0 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|385804135|ref|YP_005840535.1| - 8.7e-06 25.1 0.0 2.1e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|385804135|ref|YP_005840535.1| - 4e-05 22.9 0.0 0.021 14.0 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|385804135|ref|YP_005840535.1| - 0.00013 22.0 0.0 0.0027 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|385804135|ref|YP_005840535.1| - 0.00017 21.7 0.0 0.00099 19.3 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|385804135|ref|YP_005840535.1| - 0.00017 20.7 0.1 0.17 10.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_17 PF13207.1 gi|385804135|ref|YP_005840535.1| - 0.00028 21.7 0.0 0.00048 20.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|385804135|ref|YP_005840535.1| - 0.00041 20.1 0.0 0.00055 19.7 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_33 PF13671.1 gi|385804135|ref|YP_005840535.1| - 0.00054 19.8 0.0 0.00099 18.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|385804135|ref|YP_005840535.1| - 0.0018 17.4 0.0 0.17 11.0 0.0 2.1 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.1 gi|385804135|ref|YP_005840535.1| - 0.0019 18.1 0.1 0.031 14.1 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|385804135|ref|YP_005840535.1| - 0.0019 17.4 0.0 0.0031 16.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|385804135|ref|YP_005840535.1| - 0.0044 16.9 0.0 0.041 13.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|385804135|ref|YP_005840535.1| - 0.0087 15.4 0.0 0.032 13.6 0.0 2.0 1 1 1 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|385804135|ref|YP_005840535.1| - 0.009 15.1 0.0 0.016 14.3 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin DUF815 PF05673.8 gi|385804135|ref|YP_005840535.1| - 0.011 14.6 0.0 0.018 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_13 PF13166.1 gi|385804135|ref|YP_005840535.1| - 0.011 14.2 0.0 0.024 13.1 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|385804135|ref|YP_005840535.1| - 0.011 15.9 0.0 0.022 15.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|385804135|ref|YP_005840535.1| - 0.012 15.1 0.0 0.033 13.6 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family UPF0079 PF02367.12 gi|385804135|ref|YP_005840535.1| - 0.022 14.3 0.0 0.041 13.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_28 PF13521.1 gi|385804135|ref|YP_005840535.1| - 0.024 14.5 0.0 0.16 11.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain Guanylate_kin PF00625.16 gi|385804135|ref|YP_005840535.1| - 0.027 13.9 0.0 0.16 11.3 0.0 2.1 2 0 0 2 2 2 0 Guanylate kinase T2SE PF00437.15 gi|385804135|ref|YP_005840535.1| - 0.033 13.1 0.0 0.057 12.3 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein ATP_bind_1 PF03029.12 gi|385804135|ref|YP_005840535.1| - 0.037 13.5 0.0 0.073 12.5 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_24 PF13479.1 gi|385804135|ref|YP_005840535.1| - 0.04 13.4 0.0 0.077 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain Dynamin_N PF00350.18 gi|385804135|ref|YP_005840535.1| - 0.045 13.5 0.0 0.11 12.2 0.0 1.6 2 0 0 2 2 2 0 Dynamin family Rad17 PF03215.10 gi|385804135|ref|YP_005840535.1| - 0.052 12.2 0.0 0.061 12.0 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein MMR_HSR1 PF01926.18 gi|385804135|ref|YP_005840535.1| - 0.053 13.4 0.0 0.069 13.1 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase MobB PF03205.9 gi|385804135|ref|YP_005840535.1| - 0.057 13.1 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|385804135|ref|YP_005840535.1| - 0.061 13.0 0.0 0.47 10.1 0.0 2.1 2 0 0 2 2 2 0 NTPase MutS_V PF00488.16 gi|385804135|ref|YP_005840535.1| - 0.061 12.7 0.0 0.098 12.0 0.0 1.2 1 0 0 1 1 1 0 MutS domain V RNA_helicase PF00910.17 gi|385804135|ref|YP_005840535.1| - 0.077 13.1 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Miro PF08477.8 gi|385804135|ref|YP_005840535.1| - 0.087 13.3 0.0 0.25 11.8 0.0 1.8 2 0 0 2 2 1 0 Miro-like protein AAA_30 PF13604.1 gi|385804135|ref|YP_005840535.1| - 0.094 12.2 0.0 0.62 9.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|385804135|ref|YP_005840535.1| - 0.098 12.0 0.0 0.3 10.4 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein DBI_PRT PF02277.12 gi|385804135|ref|YP_005840535.1| - 0.11 11.5 0.0 0.31 10.1 0.0 1.6 2 0 0 2 2 2 0 Phosphoribosyltransferase ABC_ATPase PF09818.4 gi|385804135|ref|YP_005840535.1| - 0.12 10.9 0.0 0.47 8.9 0.0 1.8 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NB-ARC PF00931.17 gi|385804135|ref|YP_005840535.1| - 0.14 11.0 0.0 0.5 9.1 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain zf-C2H2_3 PF13878.1 gi|385804136|ref|YP_005840536.1| - 0.0019 17.7 3.2 0.0028 17.1 2.2 1.3 1 0 0 1 1 1 1 zinc-finger of acetyl-transferase ESCO zf-C2H2_4 PF13894.1 gi|385804136|ref|YP_005840536.1| - 0.069 13.5 0.5 0.1 13.0 0.4 1.3 1 0 0 1 1 1 0 C2H2-type zinc finger C1_4 PF07975.7 gi|385804136|ref|YP_005840536.1| - 0.077 13.0 1.1 0.093 12.7 0.7 1.1 1 0 0 1 1 1 0 TFIIH C1-like domain GHMP_kinases_N PF00288.21 gi|385804138|ref|YP_005840538.1| - 7.4e-10 38.7 2.5 1.3e-09 37.9 0.9 2.1 2 0 0 2 2 2 1 GHMP kinases N terminal domain CM_2 PF01817.16 gi|385804139|ref|YP_005840539.1| - 2.5e-18 65.9 2.4 3.1e-18 65.6 1.7 1.1 1 0 0 1 1 1 1 Chorismate mutase type II DUF2461 PF09365.5 gi|385804139|ref|YP_005840539.1| - 0.11 11.9 0.0 0.12 11.8 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein (DUF2461) TruB_N PF01509.13 gi|385804140|ref|YP_005840540.1| - 6.1e-22 78.3 0.1 4.8e-17 62.4 0.1 3.3 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|385804140|ref|YP_005840540.1| - 1e-07 31.7 0.0 2.4e-07 30.5 0.0 1.6 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.15 gi|385804140|ref|YP_005840540.1| - 0.0026 17.4 0.0 0.0065 16.1 0.0 1.7 1 0 0 1 1 1 1 PUA domain Cytidylate_kin2 PF13189.1 gi|385804141|ref|YP_005840541.1| - 2.1e-16 60.3 1.2 1e-14 54.8 0.9 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|385804141|ref|YP_005840541.1| - 4.8e-14 52.7 0.0 7.1e-14 52.2 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|385804141|ref|YP_005840541.1| - 6.3e-13 49.6 0.5 9.7e-13 49.0 0.3 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|385804141|ref|YP_005840541.1| - 1.5e-08 34.6 0.5 4.8e-07 29.7 0.3 2.1 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|385804141|ref|YP_005840541.1| - 1.7e-08 34.4 0.3 1e-07 31.9 0.1 1.8 1 1 1 2 2 2 1 Adenylate kinase SKI PF01202.17 gi|385804141|ref|YP_005840541.1| - 3e-05 23.9 2.2 0.00026 20.8 1.5 2.0 1 1 0 1 1 1 1 Shikimate kinase AAA_28 PF13521.1 gi|385804141|ref|YP_005840541.1| - 0.00014 21.8 0.4 0.00026 21.0 0.3 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|385804141|ref|YP_005840541.1| - 0.0051 16.9 0.0 0.0081 16.3 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|385804141|ref|YP_005840541.1| - 0.0062 16.2 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain CPT PF07931.7 gi|385804141|ref|YP_005840541.1| - 0.0075 15.9 0.1 0.093 12.3 0.1 2.1 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein AAA_22 PF13401.1 gi|385804141|ref|YP_005840541.1| - 0.0097 16.0 0.1 0.016 15.3 0.1 1.5 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|385804141|ref|YP_005840541.1| - 0.011 14.8 0.2 0.034 13.2 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin KTI12 PF08433.5 gi|385804141|ref|YP_005840541.1| - 0.025 13.7 0.0 0.037 13.2 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 PRK PF00485.13 gi|385804141|ref|YP_005840541.1| - 0.026 14.0 0.0 0.063 12.8 0.0 1.7 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.1 gi|385804141|ref|YP_005840541.1| - 0.027 14.4 2.0 0.071 13.0 1.4 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.9 gi|385804141|ref|YP_005840541.1| - 0.028 14.1 0.0 0.049 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|385804141|ref|YP_005840541.1| - 0.031 13.8 0.2 0.06 12.8 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.17 gi|385804141|ref|YP_005840541.1| - 0.055 13.6 0.0 0.093 12.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase PIG-L PF02585.12 gi|385804141|ref|YP_005840541.1| - 0.11 13.0 0.0 0.19 12.2 0.0 1.4 1 0 0 1 1 1 0 GlcNAc-PI de-N-acetylase ABC_tran PF00005.22 gi|385804141|ref|YP_005840541.1| - 0.14 12.4 0.0 0.2 11.9 0.0 1.5 1 1 0 1 1 1 0 ABC transporter AAA_25 PF13481.1 gi|385804141|ref|YP_005840541.1| - 0.15 11.4 0.8 0.26 10.6 0.5 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|385804141|ref|YP_005840541.1| - 0.38 10.2 4.2 3.7 7.0 2.9 2.4 1 1 0 1 1 1 0 AAA domain DUF106 PF01956.11 gi|385804142|ref|YP_005840542.1| - 2.2e-45 154.2 0.8 2.9e-45 153.7 0.6 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF106 60KD_IMP PF02096.15 gi|385804142|ref|YP_005840542.1| - 7.1e-06 25.8 0.4 1.1e-05 25.2 0.3 1.3 1 0 0 1 1 1 1 60Kd inner membrane protein YgaB PF14182.1 gi|385804142|ref|YP_005840542.1| - 0.076 13.2 2.2 0.12 12.5 1.6 1.3 1 0 0 1 1 1 0 YgaB-like protein FA_desaturase PF00487.19 gi|385804142|ref|YP_005840542.1| - 0.12 11.7 0.5 0.3 10.5 0.1 1.7 2 0 0 2 2 2 0 Fatty acid desaturase ADK PF00406.17 gi|532164363|ref|YP_005840543.3| - 2.1e-41 141.2 0.0 2.6e-41 141.0 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|532164363|ref|YP_005840543.3| - 3e-18 65.1 0.8 5.2e-18 64.4 0.5 1.4 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_33 PF13671.1 gi|532164363|ref|YP_005840543.3| - 8.4e-09 35.4 0.0 1.7e-08 34.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|532164363|ref|YP_005840543.3| - 9e-09 36.1 0.0 1.4e-08 35.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|532164363|ref|YP_005840543.3| - 1.2e-07 32.1 0.0 2.3e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain TF_Zn_Ribbon PF08271.7 gi|532164363|ref|YP_005840543.3| - 2.4e-05 23.5 2.7 5.4e-05 22.4 1.9 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding Prok-RING_1 PF14446.1 gi|532164363|ref|YP_005840543.3| - 0.00033 20.3 3.0 0.051 13.3 0.2 2.2 2 0 0 2 2 2 2 Prokaryotic RING finger family 1 DZR PF12773.2 gi|532164363|ref|YP_005840543.3| - 0.00038 20.2 0.5 0.00063 19.5 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon RuvB_N PF05496.7 gi|532164363|ref|YP_005840543.3| - 0.00045 19.3 0.0 0.00063 18.8 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus SKI PF01202.17 gi|532164363|ref|YP_005840543.3| - 0.001 18.9 0.3 0.0043 16.9 0.1 2.1 2 1 0 2 2 2 1 Shikimate kinase zf-IS66 PF13005.2 gi|532164363|ref|YP_005840543.3| - 0.0012 18.7 4.2 0.11 12.5 0.7 2.4 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 A2L_zn_ribbon PF08792.5 gi|532164363|ref|YP_005840543.3| - 0.0017 17.7 0.4 0.11 11.9 0.0 2.4 2 0 0 2 2 2 1 A2L zinc ribbon domain AAA_5 PF07728.9 gi|532164363|ref|YP_005840543.3| - 0.0069 16.1 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) PduV-EutP PF10662.4 gi|532164363|ref|YP_005840543.3| - 0.0073 15.8 0.0 0.012 15.0 0.0 1.5 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|532164363|ref|YP_005840543.3| - 0.013 15.4 0.0 0.022 14.6 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase Zn_ribbon_recom PF13408.1 gi|532164363|ref|YP_005840543.3| - 0.017 15.3 0.8 4.1 7.7 0.0 2.7 3 1 0 3 3 2 0 Recombinase zinc beta ribbon domain AAA PF00004.24 gi|532164363|ref|YP_005840543.3| - 0.023 14.9 0.1 0.047 13.8 0.0 1.7 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|532164363|ref|YP_005840543.3| - 0.025 13.6 0.0 0.055 12.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin zf-C4_Topoisom PF01396.14 gi|532164363|ref|YP_005840543.3| - 0.036 13.5 0.4 7.6 6.1 0.0 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger GFA PF04828.9 gi|532164363|ref|YP_005840543.3| - 0.043 13.7 0.5 1.1 9.2 0.0 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-ribbon_3 PF13248.1 gi|532164363|ref|YP_005840543.3| - 0.06 12.5 3.2 0.36 10.0 2.4 2.0 1 1 1 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|532164363|ref|YP_005840543.3| - 0.062 12.9 0.4 0.13 11.9 0.3 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2H2_3 PF13878.1 gi|532164363|ref|YP_005840543.3| - 0.073 12.6 0.2 1.3 8.6 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Mg_chelatase PF01078.16 gi|532164363|ref|YP_005840543.3| - 0.076 12.1 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Nudix_N_2 PF14803.1 gi|532164363|ref|YP_005840543.3| - 0.086 12.5 3.0 7.1 6.4 0.2 2.4 2 0 0 2 2 2 0 Nudix N-terminal AAA_22 PF13401.1 gi|532164363|ref|YP_005840543.3| - 0.097 12.8 0.0 0.19 11.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain Ogr_Delta PF04606.7 gi|532164363|ref|YP_005840543.3| - 0.14 11.8 0.3 3.2 7.4 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DUF2387 PF09526.5 gi|532164363|ref|YP_005840543.3| - 0.21 11.5 1.9 0.52 10.2 1.3 1.7 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) zinc_ribbon_2 PF13240.1 gi|532164363|ref|YP_005840543.3| - 0.37 10.3 2.8 4.5 6.8 1.9 2.3 1 1 0 1 1 1 0 zinc-ribbon domain RRN7 PF11781.3 gi|532164363|ref|YP_005840543.3| - 0.66 9.5 3.8 2.9 7.4 0.3 2.3 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 UPF0547 PF10571.4 gi|532164363|ref|YP_005840543.3| - 0.73 9.5 4.5 4.1 7.1 3.1 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF35_N PF12172.3 gi|532164363|ref|YP_005840543.3| - 1.7 8.6 4.4 22 5.0 3.1 2.2 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Abhydrolase_6 PF12697.2 gi|385804145|ref|YP_005840545.1| - 6.1e-37 127.6 4.9 7.8e-37 127.3 3.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|385804145|ref|YP_005840545.1| - 3.7e-24 85.5 0.4 5.5e-24 84.9 0.3 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|385804145|ref|YP_005840545.1| - 1.5e-18 66.9 0.0 5.9e-18 65.0 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|385804145|ref|YP_005840545.1| - 4.4e-06 26.1 0.1 0.0025 17.1 0.0 2.7 2 1 0 2 2 2 2 Dienelactone hydrolase family Hydrolase_4 PF12146.3 gi|385804145|ref|YP_005840545.1| - 8.6e-05 22.3 0.1 0.00015 21.5 0.0 1.4 1 0 0 1 1 1 1 Putative lysophospholipase Peptidase_S9 PF00326.16 gi|385804145|ref|YP_005840545.1| - 0.0017 17.6 0.8 0.057 12.6 0.1 2.3 2 1 0 2 2 2 1 Prolyl oligopeptidase family Abhydrolase_4 PF08386.5 gi|385804145|ref|YP_005840545.1| - 0.0049 16.7 0.1 0.0093 15.8 0.1 1.4 1 0 0 1 1 1 1 TAP-like protein FSH1 PF03959.8 gi|385804145|ref|YP_005840545.1| - 0.016 14.6 0.0 0.027 13.9 0.0 1.6 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Ndr PF03096.9 gi|385804145|ref|YP_005840545.1| - 0.017 13.5 0.0 0.036 12.5 0.0 1.5 2 0 0 2 2 2 0 Ndr family Esterase PF00756.15 gi|385804145|ref|YP_005840545.1| - 0.019 14.4 0.2 0.031 13.6 0.1 1.5 1 1 0 1 1 1 0 Putative esterase Chlorophyllase PF07224.6 gi|385804145|ref|YP_005840545.1| - 0.093 11.5 0.0 0.27 9.9 0.0 1.7 1 1 0 1 1 1 0 Chlorophyllase HopW1-1 PF15457.1 gi|385804145|ref|YP_005840545.1| - 0.095 11.7 0.1 0.14 11.1 0.1 1.2 1 0 0 1 1 1 0 Type III T3SS secreted effector HopW1-1/HopPmaA adh_short PF00106.20 gi|385804147|ref|YP_005840547.1| - 7.7e-22 77.9 0.3 1.6e-21 76.9 0.2 1.5 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|385804147|ref|YP_005840547.1| - 2e-08 34.3 0.0 2.9e-08 33.7 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|385804147|ref|YP_005840547.1| - 0.00048 19.6 0.0 0.00056 19.4 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|385804147|ref|YP_005840547.1| - 0.0019 18.2 0.6 0.004 17.1 0.4 1.5 1 1 0 1 1 1 1 NADH(P)-binding KR PF08659.5 gi|385804147|ref|YP_005840547.1| - 0.0066 16.1 0.1 0.075 12.6 0.1 2.0 1 1 0 1 1 1 1 KR domain NUDIX PF00293.23 gi|385804148|ref|YP_005840548.1| - 1.3e-08 34.5 0.6 1.7e-08 34.1 0.4 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|385804148|ref|YP_005840548.1| - 0.0054 16.1 0.4 0.017 14.5 0.3 1.8 1 1 0 1 1 1 1 NUDIX domain HTH_AsnC-type PF13404.1 gi|385804149|ref|YP_005840549.1| - 1.3e-17 63.0 1.3 2.9e-17 61.9 0.9 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|385804149|ref|YP_005840549.1| - 1.3e-16 59.7 0.5 2.4e-16 58.8 0.1 1.7 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|385804149|ref|YP_005840549.1| - 1.5e-10 40.6 0.8 2.6e-10 39.8 0.5 1.4 1 0 0 1 1 1 1 AsnC family HTH_20 PF12840.2 gi|385804149|ref|YP_005840549.1| - 2.8e-06 27.0 0.0 4.8e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|385804149|ref|YP_005840549.1| - 1.4e-05 24.5 0.0 2.6e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|385804149|ref|YP_005840549.1| - 3.2e-05 23.3 0.1 0.00065 19.1 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 MarR PF01047.17 gi|385804149|ref|YP_005840549.1| - 3.8e-05 23.3 0.6 0.00017 21.2 0.0 2.2 3 0 0 3 3 2 1 MarR family MarR_2 PF12802.2 gi|385804149|ref|YP_005840549.1| - 4.4e-05 23.0 0.5 8e-05 22.2 0.1 1.6 2 0 0 2 2 1 1 MarR family HTH_11 PF08279.7 gi|385804149|ref|YP_005840549.1| - 0.00014 21.4 0.1 0.00032 20.2 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|385804149|ref|YP_005840549.1| - 0.00023 20.6 0.1 0.00058 19.4 0.0 1.7 2 0 0 2 2 1 1 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.1 gi|385804149|ref|YP_005840549.1| - 0.00037 19.6 0.4 0.0008 18.5 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_DeoR PF08220.7 gi|385804149|ref|YP_005840549.1| - 0.0007 19.0 0.3 0.0017 17.8 0.2 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain GntR PF00392.16 gi|385804149|ref|YP_005840549.1| - 0.0011 18.3 0.2 0.0025 17.2 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_29 PF13551.1 gi|385804149|ref|YP_005840549.1| - 0.0035 17.4 0.0 0.0063 16.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_27 PF13463.1 gi|385804149|ref|YP_005840549.1| - 0.0049 17.1 0.0 0.011 16.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain RPA_C PF08784.6 gi|385804149|ref|YP_005840549.1| - 0.0049 17.2 0.0 0.01 16.2 0.0 1.5 1 0 0 1 1 1 1 Replication protein A C terminal TrmB PF01978.14 gi|385804149|ref|YP_005840549.1| - 0.0051 16.4 0.1 0.11 12.1 0.0 2.1 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB GYD PF08734.6 gi|385804149|ref|YP_005840549.1| - 0.006 16.2 0.5 0.034 13.8 0.2 2.2 1 1 0 1 1 1 1 GYD domain Sigma70_r4 PF04545.11 gi|385804149|ref|YP_005840549.1| - 0.0079 15.4 1.0 0.016 14.4 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 PaaX PF07848.7 gi|385804149|ref|YP_005840549.1| - 0.009 15.9 0.1 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 PaaX-like protein HTH_28 PF13518.1 gi|385804149|ref|YP_005840549.1| - 0.0092 15.9 0.0 0.018 15.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|385804149|ref|YP_005840549.1| - 0.012 15.0 0.1 0.045 13.2 0.0 1.9 1 1 1 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|385804149|ref|YP_005840549.1| - 0.013 15.6 0.0 0.24 11.5 0.0 2.1 1 1 1 2 2 2 0 Transcriptional regulator HTH_Mga PF08280.6 gi|385804149|ref|YP_005840549.1| - 0.026 14.2 0.0 0.043 13.5 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain DUF4191 PF13829.1 gi|385804149|ref|YP_005840549.1| - 0.028 13.5 0.6 0.084 11.9 0.2 1.8 1 1 0 2 2 2 0 Domain of unknown function (DUF4191) DUF746 PF05344.6 gi|385804149|ref|YP_005840549.1| - 0.035 13.6 0.1 0.15 11.5 0.0 2.0 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_Crp_2 PF13545.1 gi|385804149|ref|YP_005840549.1| - 0.046 13.5 0.1 0.14 11.9 0.1 1.9 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.15 gi|385804149|ref|YP_005840549.1| - 0.046 13.3 0.0 0.087 12.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Stk19 PF10494.4 gi|385804149|ref|YP_005840549.1| - 0.056 12.8 0.3 0.06 12.7 0.2 1.2 1 1 0 1 1 1 0 Serine-threonine protein kinase 19 GerE PF00196.14 gi|385804149|ref|YP_005840549.1| - 0.059 12.6 0.2 0.23 10.7 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_38 PF13936.1 gi|385804149|ref|YP_005840549.1| - 0.12 12.0 0.3 0.29 10.7 0.1 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain CPSase_sm_chain PF00988.17 gi|385804150|ref|YP_005840550.1| - 2.6e-38 130.4 0.0 2.3e-37 127.4 0.0 2.2 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|385804150|ref|YP_005840550.1| - 3.1e-35 121.3 0.0 1.8e-34 118.8 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|385804150|ref|YP_005840550.1| - 3.6e-08 33.1 0.1 1.3e-05 24.7 0.0 2.3 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|385804150|ref|YP_005840550.1| - 0.047 13.1 0.0 0.092 12.1 0.0 1.5 1 0 0 1 1 1 0 DJ-1/PfpI family Acetyltransf_1 PF00583.19 gi|385804151|ref|YP_005840551.1| - 8.5e-10 38.5 0.0 1.7e-09 37.5 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|385804151|ref|YP_005840551.1| - 7.1e-06 26.2 0.0 1.6e-05 25.0 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|385804151|ref|YP_005840551.1| - 0.00017 21.3 0.0 0.00036 20.2 0.0 1.6 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|385804151|ref|YP_005840551.1| - 0.00059 19.9 0.2 0.0026 17.8 0.1 2.2 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain KR PF08659.5 gi|385804151|ref|YP_005840551.1| - 0.001 18.7 0.4 1.6 8.3 0.0 2.6 3 0 0 3 3 3 2 KR domain Acetyltransf_7 PF13508.1 gi|385804151|ref|YP_005840551.1| - 0.0013 18.8 0.0 0.0026 17.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain adh_short PF00106.20 gi|385804151|ref|YP_005840551.1| - 0.016 15.1 1.1 1.5 8.7 0.1 2.3 2 0 0 2 2 2 0 short chain dehydrogenase Acetyltransf_CG PF14542.1 gi|385804151|ref|YP_005840551.1| - 0.031 14.1 0.0 0.074 12.9 0.0 1.6 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|385804151|ref|YP_005840551.1| - 0.037 13.8 0.0 0.1 12.4 0.0 1.8 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Asparaginase PF00710.15 gi|385804152|ref|YP_005840552.1| - 1.4e-85 286.9 2.3 1.7e-85 286.6 1.6 1.1 1 0 0 1 1 1 1 Asparaginase CK2S PF15011.1 gi|385804153|ref|YP_005840553.1| - 0.071 12.9 0.0 2.5 7.8 0.0 2.1 2 0 0 2 2 2 0 Casein Kinase 2 substrate FmdA_AmdA PF03069.10 gi|385804156|ref|YP_005840556.1| - 1.3e-144 481.5 0.0 2.9e-144 480.3 0.0 1.5 1 1 0 1 1 1 1 Acetamidase/Formamidase family Cpn60_TCP1 PF00118.19 gi|385804157|ref|YP_005840557.1| - 4.1e-132 441.2 2.2 4.7e-132 441.0 1.5 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Peripla_BP_5 PF13433.1 gi|385804158|ref|YP_005840558.1| - 1.8e-89 300.0 1.0 2.9e-89 299.3 0.7 1.3 1 1 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_6 PF13458.1 gi|385804158|ref|YP_005840558.1| - 3.2e-83 279.9 6.5 4.1e-83 279.5 4.5 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|385804158|ref|YP_005840558.1| - 6.8e-12 44.8 0.7 1.8e-11 43.4 0.5 1.5 1 1 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.4 gi|385804158|ref|YP_005840558.1| - 0.058 13.4 0.3 0.16 12.0 0.2 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_2 PF02653.11 gi|385804159|ref|YP_005840559.1| - 1.4e-38 132.4 45.9 1.7e-38 132.1 31.8 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|385804160|ref|YP_005840560.1| - 2.7e-31 108.5 37.5 3.9e-31 108.0 26.0 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|385804161|ref|YP_005840561.1| - 6.4e-28 97.7 0.1 1e-27 97.0 0.1 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385804161|ref|YP_005840561.1| - 1.4e-08 35.0 1.3 0.00012 22.1 0.0 2.3 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|385804161|ref|YP_005840561.1| - 0.00042 19.6 3.4 0.0016 17.7 2.4 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain BCA_ABC_TP_C PF12399.3 gi|385804161|ref|YP_005840561.1| - 0.001 18.7 0.1 0.0018 17.8 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter DUF258 PF03193.11 gi|385804161|ref|YP_005840561.1| - 0.0034 16.5 0.1 0.0057 15.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|385804161|ref|YP_005840561.1| - 0.0049 16.3 0.0 0.0096 15.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.16 gi|385804161|ref|YP_005840561.1| - 0.067 12.3 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_23 PF13476.1 gi|385804161|ref|YP_005840561.1| - 0.16 12.3 4.2 0.27 11.5 2.5 2.0 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|385804161|ref|YP_005840561.1| - 0.31 9.4 4.7 0.26 9.7 0.6 2.1 1 1 1 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|385804162|ref|YP_005840562.1| - 2.7e-28 98.9 0.0 4.2e-28 98.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385804162|ref|YP_005840562.1| - 1.8e-06 28.1 0.7 0.03 14.2 0.1 2.2 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|385804162|ref|YP_005840562.1| - 0.0024 17.9 0.7 0.015 15.4 0.5 2.0 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|385804162|ref|YP_005840562.1| - 0.0037 16.9 0.5 0.0067 16.1 0.1 1.5 2 0 0 2 2 1 1 NACHT domain Miro PF08477.8 gi|385804162|ref|YP_005840562.1| - 0.0057 17.1 0.1 0.014 15.8 0.0 1.7 2 0 0 2 2 2 1 Miro-like protein MMR_HSR1 PF01926.18 gi|385804162|ref|YP_005840562.1| - 0.006 16.5 0.0 0.0096 15.8 0.0 1.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_23 PF13476.1 gi|385804162|ref|YP_005840562.1| - 0.0086 16.4 1.0 0.031 14.5 0.1 1.9 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|385804162|ref|YP_005840562.1| - 0.009 15.2 0.3 0.016 14.4 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 NB-ARC PF00931.17 gi|385804162|ref|YP_005840562.1| - 0.0096 14.8 0.3 0.022 13.6 0.1 1.6 2 0 0 2 2 2 1 NB-ARC domain Arch_ATPase PF01637.13 gi|385804162|ref|YP_005840562.1| - 0.02 14.6 0.0 0.032 13.9 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase ABC_ATPase PF09818.4 gi|385804162|ref|YP_005840562.1| - 0.02 13.4 1.4 7.2 5.0 0.0 2.9 2 1 0 2 2 2 0 Predicted ATPase of the ABC class SMC_N PF02463.14 gi|385804162|ref|YP_005840562.1| - 0.028 13.6 0.3 0.092 11.9 0.2 1.7 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|385804162|ref|YP_005840562.1| - 0.033 13.7 0.1 0.066 12.7 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.9 gi|385804162|ref|YP_005840562.1| - 0.047 13.4 0.1 0.096 12.3 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|385804162|ref|YP_005840562.1| - 0.067 13.1 0.9 0.18 11.7 0.6 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.1 gi|385804162|ref|YP_005840562.1| - 0.069 13.0 0.0 0.56 10.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|385804162|ref|YP_005840562.1| - 0.072 12.1 0.1 1.5 7.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|385804162|ref|YP_005840562.1| - 0.077 12.4 0.1 0.26 10.6 0.1 1.7 2 0 0 2 2 2 0 AAA-like domain AAA_25 PF13481.1 gi|385804162|ref|YP_005840562.1| - 0.079 12.3 0.0 0.28 10.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|385804162|ref|YP_005840562.1| - 0.088 12.4 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_24 PF13479.1 gi|385804162|ref|YP_005840562.1| - 0.098 12.2 0.1 0.26 10.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain Usp PF00582.21 gi|385804163|ref|YP_005840563.1| - 4.5e-16 59.3 0.0 5.4e-16 59.0 0.0 1.1 1 0 0 1 1 1 1 Universal stress protein family CRCB PF02537.10 gi|385804164|ref|YP_005840564.1| - 8.9e-21 73.9 10.5 1e-20 73.7 7.3 1.1 1 0 0 1 1 1 1 CrcB-like protein EamA PF00892.15 gi|385804164|ref|YP_005840564.1| - 0.052 13.5 7.0 0.081 12.9 4.8 1.4 1 0 0 1 1 1 0 EamA-like transporter family DUF606 PF04657.8 gi|385804164|ref|YP_005840564.1| - 0.17 11.9 5.5 0.32 11.0 3.8 1.6 1 1 0 1 1 1 0 Protein of unknown function, DUF606 UPF0197 PF05251.7 gi|385804164|ref|YP_005840564.1| - 2.7 8.3 6.7 0.96 9.7 0.7 2.5 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0197) CRCB PF02537.10 gi|385804165|ref|YP_005840565.1| - 3.3e-25 88.2 15.1 3.9e-25 88.0 10.5 1.1 1 0 0 1 1 1 1 CrcB-like protein MFS_3 PF05977.8 gi|385804165|ref|YP_005840565.1| - 0.096 10.7 3.7 0.11 10.5 2.6 1.0 1 0 0 1 1 1 0 Transmembrane secretion effector HTH_5 PF01022.15 gi|385804167|ref|YP_005840567.1| - 6.5e-15 54.5 0.1 1.6e-14 53.3 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|385804167|ref|YP_005840567.1| - 1.7e-13 50.1 1.2 4.6e-13 48.7 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|385804167|ref|YP_005840567.1| - 3.6e-10 39.3 0.0 3.8e-06 26.5 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|385804167|ref|YP_005840567.1| - 7.2e-09 35.1 0.2 8.2e-07 28.6 0.1 2.8 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|385804167|ref|YP_005840567.1| - 4.5e-08 32.6 0.1 2e-05 24.2 0.0 2.6 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|385804167|ref|YP_005840567.1| - 1.7e-07 30.5 0.3 4.6e-07 29.1 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|385804167|ref|YP_005840567.1| - 2.1e-06 27.9 0.2 6.4e-05 23.1 0.0 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|385804167|ref|YP_005840567.1| - 3.9e-05 23.4 0.0 0.00069 19.4 0.0 2.4 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|385804167|ref|YP_005840567.1| - 8.7e-05 22.0 0.0 0.00025 20.5 0.0 1.8 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.15 gi|385804167|ref|YP_005840567.1| - 0.00014 21.9 0.0 0.0082 16.2 0.0 2.4 2 0 0 2 2 2 1 Transcriptional regulator DUF4423 PF14394.1 gi|385804167|ref|YP_005840567.1| - 0.00047 19.7 0.1 0.38 10.2 0.0 2.8 3 1 1 4 4 4 2 Domain of unknown function (DUF4423) PadR PF03551.9 gi|385804167|ref|YP_005840567.1| - 0.00057 19.5 0.5 0.007 16.1 0.1 2.8 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|385804167|ref|YP_005840567.1| - 0.00089 19.0 0.0 1 9.2 0.0 2.6 3 0 0 3 3 2 2 Winged helix-turn-helix HTH_Crp_2 PF13545.1 gi|385804167|ref|YP_005840567.1| - 0.0023 17.6 0.0 0.02 14.6 0.0 2.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain DDRGK PF09756.4 gi|385804167|ref|YP_005840567.1| - 0.0078 15.6 1.3 0.17 11.2 0.0 2.3 2 0 0 2 2 2 1 DDRGK domain DUF2513 PF10711.4 gi|385804167|ref|YP_005840567.1| - 0.014 15.5 0.0 0.044 13.8 0.0 1.8 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_CodY PF08222.6 gi|385804167|ref|YP_005840567.1| - 0.018 14.3 0.0 0.21 10.9 0.0 2.2 2 0 0 2 2 2 0 CodY helix-turn-helix domain HTH_10 PF04967.7 gi|385804167|ref|YP_005840567.1| - 0.022 14.3 0.0 0.055 13.0 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain HTH_23 PF13384.1 gi|385804167|ref|YP_005840567.1| - 0.022 14.3 0.0 0.07 12.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain Cucumo_2B PF03263.8 gi|385804167|ref|YP_005840567.1| - 0.023 14.9 3.9 0.93 9.8 0.1 2.7 2 1 1 3 3 3 0 Cucumovirus protein 2B Cas_Cas1 PF01867.11 gi|385804167|ref|YP_005840567.1| - 0.04 12.9 0.3 0.069 12.2 0.2 1.4 1 0 0 1 1 1 0 CRISPR associated protein Cas1 ArsR PF09824.4 gi|385804167|ref|YP_005840567.1| - 0.043 13.1 0.0 0.17 11.2 0.0 1.8 2 0 0 2 2 2 0 ArsR transcriptional regulator DUF3456 PF11938.3 gi|385804167|ref|YP_005840567.1| - 0.064 13.2 0.9 0.13 12.2 0.6 1.5 1 0 0 1 1 1 0 TLR4 regulator and MIR-interacting MSAP HTH_IclR PF09339.5 gi|385804167|ref|YP_005840567.1| - 0.11 12.1 0.3 1.9 8.1 0.0 3.1 4 0 0 4 4 4 0 IclR helix-turn-helix domain DUF1405 PF07187.6 gi|385804168|ref|YP_005840568.1| - 8.5e-41 139.4 11.3 1.1e-40 139.0 7.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) Metalloenzyme PF01676.13 gi|385804169|ref|YP_005840569.1| - 4e-80 268.8 1.9 4.5e-80 268.6 1.3 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily iPGM_N PF06415.8 gi|385804169|ref|YP_005840569.1| - 4e-75 251.9 0.1 5.7e-75 251.4 0.1 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Phosphodiest PF01663.17 gi|385804169|ref|YP_005840569.1| - 1.3e-07 31.3 0.1 3.4e-07 29.9 0.1 1.8 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|385804169|ref|YP_005840569.1| - 0.00018 21.2 0.1 0.00046 19.9 0.0 1.7 1 0 0 1 1 1 1 PglZ domain SNARE_assoc PF09335.6 gi|385804170|ref|YP_005840570.1| - 1.9e-10 40.9 4.9 1.9e-10 40.9 3.4 2.3 2 1 0 2 2 2 1 SNARE associated Golgi protein Peptidase_C3 PF00548.15 gi|385804172|ref|YP_005840572.1| - 0.013 15.3 0.1 0.014 15.2 0.1 1.0 1 0 0 1 1 1 0 3C cysteine protease (picornain 3C) CCDC92 PF14916.1 gi|385804172|ref|YP_005840572.1| - 0.044 13.3 7.1 0.035 13.7 3.5 1.9 1 1 0 1 1 1 0 Coiled-coil domain of unknown function Atg14 PF10186.4 gi|385804172|ref|YP_005840572.1| - 0.1 11.4 3.6 0.11 11.4 2.5 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 ClpB_D2-small PF10431.4 gi|385804172|ref|YP_005840572.1| - 0.15 11.9 2.3 0.21 11.5 1.6 1.2 1 0 0 1 1 1 0 C-terminal, D2-small domain, of ClpB protein DUF4407 PF14362.1 gi|385804172|ref|YP_005840572.1| - 0.37 9.7 3.7 0.45 9.4 2.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) CorA PF01544.13 gi|385804172|ref|YP_005840572.1| - 0.37 9.7 3.5 0.41 9.6 2.4 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein ABC_transp_aux PF09822.4 gi|385804174|ref|YP_005840574.1| - 5.7e-07 29.2 0.0 7.2e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DUF4350 PF14258.1 gi|385804174|ref|YP_005840574.1| - 1.3e-05 25.2 0.3 5.7e-05 23.2 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) Peptidase_S49 PF01343.13 gi|385804175|ref|YP_005840575.1| - 1.5e-18 67.0 1.4 3.2e-17 62.7 0.9 2.3 1 1 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.18 gi|385804175|ref|YP_005840575.1| - 0.00097 18.8 0.1 0.004 16.8 0.0 1.9 2 0 0 2 2 2 1 Clp protease SDH_sah PF01972.11 gi|385804175|ref|YP_005840575.1| - 0.014 14.2 0.0 0.019 13.7 0.0 1.1 1 0 0 1 1 1 0 Serine dehydrogenase proteinase OKR_DC_1_N PF03709.10 gi|385804175|ref|YP_005840575.1| - 0.015 15.3 0.0 0.029 14.4 0.0 1.4 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain Peptidase_S49_N PF08496.5 gi|385804175|ref|YP_005840575.1| - 0.34 10.7 0.1 0.34 10.7 0.1 1.7 2 0 0 2 2 2 0 Peptidase family S49 N-terminal HAD_2 PF13419.1 gi|385804176|ref|YP_005840576.1| - 1.3e-11 45.0 0.0 1.4e-07 31.8 0.0 2.1 1 1 1 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|385804176|ref|YP_005840576.1| - 7e-06 26.6 0.1 0.003 17.9 0.0 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|385804176|ref|YP_005840576.1| - 0.0036 16.9 0.0 0.0075 15.9 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|385804176|ref|YP_005840576.1| - 0.034 14.3 0.1 0.37 10.9 0.1 2.0 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase zf-ribbon_3 PF13248.1 gi|385804177|ref|YP_005840577.1| - 0.012 14.8 2.0 0.012 14.7 0.0 2.0 3 0 0 3 3 3 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|385804177|ref|YP_005840577.1| - 0.014 15.1 0.1 0.67 9.8 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_2 PF13240.1 gi|385804177|ref|YP_005840577.1| - 0.026 14.0 1.6 0.056 12.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Acetone_carb_G PF08882.6 gi|385804177|ref|YP_005840577.1| - 0.055 13.4 0.6 0.11 12.4 0.4 1.4 1 0 0 1 1 1 0 Acetone carboxylase gamma subunit DUF2296 PF10058.4 gi|385804177|ref|YP_005840577.1| - 0.059 13.1 0.5 0.15 11.7 0.2 1.8 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) TF_Zn_Ribbon PF08271.7 gi|385804177|ref|YP_005840577.1| - 0.17 11.2 1.2 0.34 10.2 0.2 1.9 2 0 0 2 2 2 0 TFIIB zinc-binding Desulfoferrod_N PF06397.7 gi|385804177|ref|YP_005840577.1| - 0.25 10.7 4.4 0.095 12.1 0.9 1.8 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain THF_DHG_CYH_C PF02882.14 gi|385804178|ref|YP_005840578.1| - 2.3e-66 221.8 3.2 2.3e-66 221.8 2.3 1.4 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|385804178|ref|YP_005840578.1| - 1e-38 131.9 0.1 1.6e-38 131.3 0.1 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SHMT PF00464.14 gi|385804179|ref|YP_005840579.1| - 4.4e-150 499.5 0.1 5.3e-150 499.2 0.1 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|385804179|ref|YP_005840579.1| - 6.2e-11 41.8 0.0 1.1e-10 41.0 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|385804179|ref|YP_005840579.1| - 2.2e-06 27.0 0.0 6e-06 25.6 0.0 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|385804179|ref|YP_005840579.1| - 0.00059 18.9 1.0 0.001 18.2 0.5 1.4 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family YcaO PF02624.11 gi|385804181|ref|YP_005840581.1| - 1e-64 219.1 0.5 1.4e-64 218.6 0.3 1.2 1 0 0 1 1 1 1 YcaO-like family DUF4318 PF14201.1 gi|385804181|ref|YP_005840581.1| - 0.12 12.1 0.0 28 4.6 0.0 3.2 4 0 0 4 4 4 0 Domain of unknown function (DUF4318) DUF63 PF01889.12 gi|385804182|ref|YP_005840582.1| - 3.7e-38 132.1 11.8 5.8e-37 128.2 8.2 2.4 2 1 0 2 2 2 1 Membrane protein of unknown function DUF63 DUF4345 PF14248.1 gi|385804182|ref|YP_005840582.1| - 0.019 14.4 17.0 0.02 14.3 0.2 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4345) Inositol_P PF00459.20 gi|385804183|ref|YP_005840583.1| - 9.3e-57 192.3 4.5 1e-56 192.2 3.1 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|385804183|ref|YP_005840583.1| - 0.014 14.2 0.1 0.02 13.7 0.1 1.2 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase Usp PF00582.21 gi|385804184|ref|YP_005840584.1| - 4.3e-29 101.4 0.2 4.8e-29 101.3 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family IPT PF01745.11 gi|385804184|ref|YP_005840584.1| - 0.08 12.0 0.0 0.099 11.7 0.0 1.1 1 0 0 1 1 1 0 Isopentenyl transferase DUF77 PF01910.12 gi|385804185|ref|YP_005840585.1| - 3.2e-22 77.9 0.6 4e-22 77.7 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF77 MCH PF02289.11 gi|385804186|ref|YP_005840586.1| - 5.8e-94 314.6 0.2 6.5e-94 314.4 0.1 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Peptidase_M48 PF01435.13 gi|385804187|ref|YP_005840587.1| - 1.9e-40 138.7 0.0 2.6e-40 138.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|385804187|ref|YP_005840587.1| - 0.0027 16.7 0.8 0.005 15.8 0.0 1.8 2 0 0 2 2 2 1 BlaR1 peptidase M56 DUF2268 PF10026.4 gi|385804187|ref|YP_005840587.1| - 0.014 14.7 0.0 0.026 13.8 0.0 1.3 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) DUF45 PF01863.12 gi|385804187|ref|YP_005840587.1| - 0.15 11.8 0.0 0.3 10.8 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function DUF45 GTP_EFTU PF00009.22 gi|385804188|ref|YP_005840588.1| - 5.2e-35 120.5 0.1 7.6e-35 120.0 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|385804188|ref|YP_005840588.1| - 1.1e-16 60.7 0.0 2.5e-16 59.6 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|385804188|ref|YP_005840588.1| - 1.5e-10 41.0 0.4 1.5e-10 41.0 0.3 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|385804188|ref|YP_005840588.1| - 0.0049 16.8 0.0 0.01 15.8 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|385804188|ref|YP_005840588.1| - 0.0065 16.0 0.8 0.06 12.8 0.0 2.2 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein DnaJ PF00226.26 gi|385804189|ref|YP_005840589.1| - 1.3e-16 60.1 0.1 1.8e-16 59.6 0.1 1.2 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.1 gi|385804189|ref|YP_005840589.1| - 4.7e-05 22.7 0.1 0.00018 20.8 0.0 1.9 1 1 1 2 2 2 1 A repeated domain in UCH-protein IncA PF04156.9 gi|385804189|ref|YP_005840589.1| - 0.13 11.7 0.3 0.2 11.2 0.2 1.3 1 0 0 1 1 1 0 IncA protein Zn_Tnp_IS1595 PF12760.2 gi|385804191|ref|YP_005840591.1| - 0.00022 20.9 0.6 0.00027 20.6 0.4 1.1 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|385804191|ref|YP_005840591.1| - 0.0004 20.5 1.1 0.52 10.7 0.0 2.1 1 1 1 2 2 2 2 Zinc-finger double domain RNA_POL_M_15KD PF02150.11 gi|385804191|ref|YP_005840591.1| - 0.00081 19.0 0.1 0.0027 17.3 0.1 1.8 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit Rubredoxin PF00301.15 gi|385804191|ref|YP_005840591.1| - 0.00088 19.0 0.3 0.89 9.4 0.0 2.2 2 0 0 2 2 2 2 Rubredoxin Zn-ribbon_8 PF09723.5 gi|385804191|ref|YP_005840591.1| - 0.0013 18.5 0.2 0.52 10.3 0.0 2.1 2 0 0 2 2 2 2 Zinc ribbon domain zf-C2H2 PF00096.21 gi|385804191|ref|YP_005840591.1| - 0.0049 17.1 0.5 0.69 10.3 0.1 2.2 2 0 0 2 2 2 1 Zinc finger, C2H2 type Lar_restr_allev PF14354.1 gi|385804191|ref|YP_005840591.1| - 0.029 14.6 0.3 0.037 14.3 0.2 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar DnaJ_CXXCXGXG PF00684.14 gi|385804191|ref|YP_005840591.1| - 0.06 13.4 0.1 0.073 13.1 0.1 1.1 1 0 0 1 1 1 0 DnaJ central domain DUF2082 PF09855.4 gi|385804191|ref|YP_005840591.1| - 0.064 13.1 0.1 3.3 7.6 0.0 2.1 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-IS66 PF13005.2 gi|385804191|ref|YP_005840591.1| - 0.065 13.2 0.7 2.4 8.2 0.1 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Prok-RING_1 PF14446.1 gi|385804191|ref|YP_005840591.1| - 0.079 12.7 1.3 3 7.6 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-RING_3 PF14369.1 gi|385804191|ref|YP_005840591.1| - 0.082 12.9 0.4 10 6.2 0.1 2.2 2 0 0 2 2 2 0 zinc-finger OrfB_Zn_ribbon PF07282.6 gi|385804191|ref|YP_005840591.1| - 0.13 11.8 0.3 11 5.7 0.1 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain HypA PF01155.14 gi|385804191|ref|YP_005840591.1| - 0.16 11.6 0.2 4.7 6.9 0.0 1.9 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-trcl PF13451.1 gi|385804191|ref|YP_005840591.1| - 0.17 11.5 1.0 12 5.6 0.0 2.1 2 0 0 2 2 2 0 Probable zinc-binding domain zf-Mss51 PF13824.1 gi|385804191|ref|YP_005840591.1| - 0.22 11.4 4.1 0.26 11.1 0.5 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 A2L_zn_ribbon PF08792.5 gi|385804191|ref|YP_005840591.1| - 0.36 10.3 3.6 6.8 6.2 0.1 2.4 2 1 0 2 2 2 0 A2L zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|385804191|ref|YP_005840591.1| - 0.36 10.6 2.2 4.7 7.0 0.1 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon ADK_lid PF05191.9 gi|385804191|ref|YP_005840591.1| - 0.39 10.4 2.0 2.2 8.0 1.4 1.9 1 1 0 1 1 1 0 Adenylate kinase, active site lid UPF0547 PF10571.4 gi|385804191|ref|YP_005840591.1| - 0.82 9.4 6.9 3.5 7.3 0.5 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF4379 PF14311.1 gi|385804191|ref|YP_005840591.1| - 1.1 9.1 5.3 0.64 9.8 0.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4379) DUF3797 PF12677.2 gi|385804191|ref|YP_005840591.1| - 1.3 8.6 3.5 15 5.2 0.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-TFIIB PF13453.1 gi|385804191|ref|YP_005840591.1| - 7.4 5.8 6.7 1.5 8.0 0.7 2.4 2 1 1 3 3 3 0 Transcription factor zinc-finger ABC_tran PF00005.22 gi|385804192|ref|YP_005840592.1| - 9.2e-31 106.9 0.0 1.2e-30 106.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385804192|ref|YP_005840592.1| - 2e-12 47.6 0.0 2.7e-06 27.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|385804192|ref|YP_005840592.1| - 7.2e-06 25.4 0.0 1.4e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|385804192|ref|YP_005840592.1| - 4e-05 22.9 0.2 0.0022 17.2 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|385804192|ref|YP_005840592.1| - 0.00024 21.2 0.2 0.16 12.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|385804192|ref|YP_005840592.1| - 0.0003 21.1 0.1 0.0005 20.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|385804192|ref|YP_005840592.1| - 0.0045 16.5 0.1 0.018 14.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|385804192|ref|YP_005840592.1| - 0.0082 15.5 0.0 0.037 13.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|385804192|ref|YP_005840592.1| - 0.014 14.8 0.1 0.4 10.0 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain MutS_V PF00488.16 gi|385804192|ref|YP_005840592.1| - 0.027 13.9 0.0 0.042 13.2 0.0 1.2 1 0 0 1 1 1 0 MutS domain V AAA_17 PF13207.1 gi|385804192|ref|YP_005840592.1| - 0.051 14.3 0.0 0.099 13.4 0.0 1.7 2 0 0 2 2 1 0 AAA domain DUF258 PF03193.11 gi|385804192|ref|YP_005840592.1| - 0.067 12.3 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|385804192|ref|YP_005840592.1| - 0.073 12.0 0.0 1.2 8.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_14 PF13173.1 gi|385804192|ref|YP_005840592.1| - 0.076 12.9 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|385804192|ref|YP_005840592.1| - 0.088 11.8 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_16 PF13191.1 gi|385804192|ref|YP_005840592.1| - 0.09 12.7 0.0 0.51 10.2 0.0 2.0 1 1 0 1 1 1 0 AAA ATPase domain ABC_ATPase PF09818.4 gi|385804192|ref|YP_005840592.1| - 0.099 11.2 0.6 6.3 5.2 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class SbcCD_C PF13558.1 gi|385804192|ref|YP_005840592.1| - 0.12 12.2 1.0 0.74 9.7 0.7 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Dynamin_N PF00350.18 gi|385804192|ref|YP_005840592.1| - 0.14 11.9 0.0 0.34 10.6 0.0 1.6 1 1 0 1 1 1 0 Dynamin family T2SE PF00437.15 gi|385804192|ref|YP_005840592.1| - 0.14 11.0 0.1 1.1 8.1 0.0 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein ABC_tran PF00005.22 gi|385804193|ref|YP_005840593.1| - 1.3e-25 90.2 0.2 9.8e-13 48.5 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|385804193|ref|YP_005840593.1| - 9.5e-12 45.4 0.3 1.8e-05 24.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|385804193|ref|YP_005840593.1| - 7.8e-09 35.0 0.0 1.3e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.14 gi|385804193|ref|YP_005840593.1| - 4.8e-05 22.6 0.1 0.07 12.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|385804193|ref|YP_005840593.1| - 0.00072 19.9 1.7 0.0012 19.2 1.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|385804193|ref|YP_005840593.1| - 0.0012 18.3 0.5 0.0032 16.9 0.1 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain MukB PF04310.7 gi|385804193|ref|YP_005840593.1| - 0.0013 18.0 0.2 0.0022 17.3 0.1 1.3 1 0 0 1 1 1 1 MukB N-terminal BPD_transp_2 PF02653.11 gi|385804194|ref|YP_005840594.1| - 1.1e-38 132.7 55.9 4.8e-23 81.4 23.5 3.1 2 1 1 3 3 3 2 Branched-chain amino acid transport system / permease component SP_C-Propep PF08999.5 gi|385804194|ref|YP_005840594.1| - 1.9 8.0 5.2 40 3.7 0.6 3.8 4 0 0 4 4 4 0 Surfactant protein C, N terminal propeptide BPD_transp_2 PF02653.11 gi|385804195|ref|YP_005840595.1| - 2e-25 89.3 62.9 1.7e-21 76.4 43.6 3.1 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.1 gi|385804196|ref|YP_005840596.1| - 5e-41 141.1 10.8 6.3e-41 140.8 7.5 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|385804196|ref|YP_005840596.1| - 1.4e-34 119.4 0.2 2.1e-34 118.8 0.1 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|385804196|ref|YP_005840596.1| - 4.7e-14 51.9 0.1 1.1e-10 40.8 0.0 2.4 2 0 0 2 2 2 2 Periplasmic binding protein domain TAT_signal PF10518.4 gi|385804196|ref|YP_005840596.1| - 0.0071 16.2 1.5 0.026 14.5 1.0 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence OrfB_IS605 PF01385.14 gi|385804197|ref|YP_005840597.1| - 1.7e-61 207.4 0.6 2.2e-61 207.1 0.4 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385804197|ref|YP_005840597.1| - 7.5e-15 54.3 0.1 1.8e-14 53.1 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Tnp_DNA_bind PF14706.1 gi|385804198|ref|YP_005840598.1| - 2.7e-26 91.0 0.0 4.6e-26 90.2 0.0 1.4 1 0 0 1 1 1 1 Transposase DNA-binding DDE_Tnp_1 PF01609.16 gi|385804198|ref|YP_005840598.1| - 4.3e-05 23.1 0.2 7.8e-05 22.3 0.1 1.5 1 1 0 1 1 1 1 Transposase DDE domain Dimer_Tnp_Tn5 PF02281.11 gi|385804198|ref|YP_005840598.1| - 0.058 13.5 0.1 0.15 12.1 0.0 1.7 2 0 0 2 2 2 0 Transposase Tn5 dimerisation domain DUF2155 PF09923.4 gi|385804198|ref|YP_005840598.1| - 0.13 12.3 0.0 0.26 11.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2155) 2TM PF13239.1 gi|385804200|ref|YP_005840600.1| - 0.041 13.9 0.2 0.049 13.6 0.1 1.1 1 0 0 1 1 1 0 2TM domain Claudin_2 PF13903.1 gi|385804201|ref|YP_005840601.1| - 0.054 13.1 1.0 0.06 13.0 0.7 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF3262 PF11660.3 gi|385804201|ref|YP_005840601.1| - 0.061 13.4 2.5 0.12 12.5 1.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3262) HATPase_c PF02518.21 gi|385804203|ref|YP_005840603.1| - 1.7e-18 66.3 0.1 4.1e-18 65.1 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|385804203|ref|YP_005840603.1| - 4.5e-11 42.7 0.0 8.4e-11 41.8 0.0 1.5 1 0 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|385804203|ref|YP_005840603.1| - 1.4e-10 41.0 3.3 6.2e-10 38.9 0.7 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|385804203|ref|YP_005840603.1| - 1.7e-10 41.1 0.0 1e-09 38.6 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|385804203|ref|YP_005840603.1| - 3.9e-06 26.6 0.0 1.6e-05 24.6 0.0 2.1 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|385804203|ref|YP_005840603.1| - 7.9e-06 25.5 0.4 0.00035 20.3 0.0 3.1 3 0 0 3 3 3 1 PAS domain HATPase_c_3 PF13589.1 gi|385804203|ref|YP_005840603.1| - 3.7e-05 23.4 0.3 0.00025 20.7 0.0 2.3 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|385804203|ref|YP_005840603.1| - 0.013 15.4 0.1 0.16 11.9 0.0 2.7 2 1 1 3 3 3 0 PAS fold IMS_C PF11799.3 gi|385804203|ref|YP_005840603.1| - 0.047 13.6 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 impB/mucB/samB family C-terminal domain DUF726 PF05277.7 gi|385804206|ref|YP_005840606.1| - 0.7 8.7 8.2 0.87 8.3 5.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF726) UPF0444 PF15475.1 gi|385804206|ref|YP_005840606.1| - 5.9 7.0 11.5 2.9 7.9 0.8 2.3 1 1 1 2 2 2 0 Transmembrane protein C12orf23, UPF0444 Snf7 PF03357.16 gi|385804207|ref|YP_005840607.1| - 0.029 13.7 2.2 3.1 7.1 0.1 2.0 1 1 1 2 2 2 0 Snf7 HTH_20 PF12840.2 gi|385804210|ref|YP_005840610.1| - 0.0009 18.9 0.5 0.0013 18.5 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|385804210|ref|YP_005840610.1| - 0.038 14.3 0.1 0.076 13.3 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Phage_prot_Gp6 PF05133.9 gi|385804210|ref|YP_005840610.1| - 0.12 10.9 0.0 0.16 10.5 0.0 1.1 1 0 0 1 1 1 0 Phage portal protein, SPP1 Gp6-like TPP_enzyme_N PF02776.13 gi|385804213|ref|YP_005840613.1| - 0.052 13.0 0.1 0.063 12.7 0.1 1.2 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LuxQ-periplasm PF09308.5 gi|385804216|ref|YP_005840616.1| - 0.031 13.6 0.2 0.04 13.2 0.1 1.1 1 0 0 1 1 1 0 LuxQ, periplasmic CBM_11 PF03425.8 gi|385804216|ref|YP_005840616.1| - 0.041 13.5 0.1 0.051 13.2 0.1 1.2 1 0 0 1 1 1 0 Carbohydrate binding domain (family 11) DUF4488 PF14869.1 gi|385804216|ref|YP_005840616.1| - 0.12 11.8 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4488) SecY PF00344.15 gi|385804218|ref|YP_005840618.1| - 3.4e-93 312.3 20.8 4.2e-93 312.0 14.4 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|385804218|ref|YP_005840618.1| - 7.8e-09 34.8 2.3 7.8e-09 34.8 1.6 2.1 2 0 0 2 2 2 1 Plug domain of Sec61p Ribosomal_L18e PF00828.14 gi|385804219|ref|YP_005840619.1| - 1.5e-25 90.0 0.3 2.4e-25 89.3 0.0 1.4 1 1 1 2 2 2 1 Ribosomal protein L18e/L15 Ribosomal_L30 PF00327.15 gi|385804220|ref|YP_005840620.1| - 7.5e-14 51.0 0.0 1.3e-13 50.2 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e OHCU_decarbox PF09349.5 gi|385804220|ref|YP_005840620.1| - 0.12 12.6 0.1 0.18 12.1 0.0 1.3 1 0 0 1 1 1 0 OHCU decarboxylase Ribosomal_S5 PF00333.15 gi|385804221|ref|YP_005840621.1| - 9.9e-27 92.4 0.2 2.3e-26 91.3 0.2 1.7 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|385804221|ref|YP_005840621.1| - 1.1e-20 72.6 0.3 1.7e-20 72.0 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L18p PF00861.17 gi|385804222|ref|YP_005840622.1| - 6.5e-30 103.7 0.0 9.2e-30 103.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L19e PF01280.15 gi|385804223|ref|YP_005840623.1| - 1.9e-54 183.4 4.2 2.1e-54 183.3 2.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e HTH_17 PF12728.2 gi|385804223|ref|YP_005840623.1| - 0.045 14.0 0.1 9.2 6.6 0.0 3.3 3 0 0 3 3 3 0 Helix-turn-helix domain Ribosomal_L32e PF01655.13 gi|385804224|ref|YP_005840624.1| - 3.8e-36 123.4 0.1 1.3e-35 121.7 0.2 1.8 2 0 0 2 2 2 1 Ribosomal protein L32 HHH_5 PF14520.1 gi|385804224|ref|YP_005840624.1| - 1.4e-09 37.9 1.5 2.8e-08 33.8 0.3 2.8 2 1 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|385804224|ref|YP_005840624.1| - 0.00016 21.1 0.0 0.00035 20.0 0.0 1.6 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.2 gi|385804224|ref|YP_005840624.1| - 0.00082 19.2 0.2 0.0025 17.6 0.1 1.8 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.18 gi|385804224|ref|YP_005840624.1| - 0.004 16.7 0.0 0.67 9.7 0.0 3.3 3 0 0 3 3 3 1 Helix-hairpin-helix motif Ribosomal_L6 PF00347.18 gi|385804225|ref|YP_005840625.1| - 2.5e-22 79.1 0.1 6.8e-10 39.3 0.0 2.8 2 1 0 2 2 2 2 Ribosomal protein L6 OspE PF02471.12 gi|385804225|ref|YP_005840625.1| - 0.019 14.8 0.1 0.031 14.1 0.0 1.4 1 0 0 1 1 1 0 Borrelia outer surface protein E Ribosomal_S8 PF00410.14 gi|385804226|ref|YP_005840626.1| - 3.7e-23 81.7 0.0 5.2e-23 81.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.16 gi|385804227|ref|YP_005840627.1| - 1.1e-16 59.9 3.7 1.2e-16 59.7 2.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.1 gi|385804227|ref|YP_005840627.1| - 0.0052 16.5 0.3 0.0066 16.1 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) Ribosomal_L37ae PF01780.14 gi|385804227|ref|YP_005840627.1| - 0.016 15.0 0.7 0.02 14.7 0.5 1.2 1 0 0 1 1 1 0 Ribosomal L37ae protein family zf-P11 PF03854.9 gi|385804227|ref|YP_005840627.1| - 0.019 14.4 0.6 0.026 13.9 0.4 1.2 1 0 0 1 1 1 0 P-11 zinc finger DUF2616 PF11077.3 gi|385804227|ref|YP_005840627.1| - 0.068 12.6 0.4 0.066 12.7 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2616) Ribosomal_S26e PF01283.14 gi|385804227|ref|YP_005840627.1| - 0.11 12.7 0.7 0.13 12.5 0.5 1.2 1 0 0 1 1 1 0 Ribosomal protein S26e FYVE PF01363.16 gi|385804227|ref|YP_005840627.1| - 0.16 11.9 4.6 0.23 11.3 3.2 1.3 1 1 0 1 1 1 0 FYVE zinc finger zf-C2HC_2 PF13913.1 gi|385804227|ref|YP_005840627.1| - 3 7.6 6.4 3.8 7.2 1.3 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Ribosomal_L5_C PF00673.16 gi|385804228|ref|YP_005840628.1| - 1e-22 79.6 0.0 1.7e-22 78.9 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|385804228|ref|YP_005840628.1| - 3.3e-14 52.4 0.0 6.2e-14 51.5 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 5_nucleotid_C PF02872.13 gi|385804228|ref|YP_005840628.1| - 0.093 12.7 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 5'-nucleotidase, C-terminal domain Ribosomal_S4e PF00900.15 gi|385804229|ref|YP_005840629.1| - 1.4e-24 85.5 0.0 2.5e-24 84.7 0.0 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|385804229|ref|YP_005840629.1| - 8.6e-12 44.7 0.1 1.7e-11 43.7 0.0 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|385804229|ref|YP_005840629.1| - 8.3e-07 28.3 0.1 1.5e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 S4 domain KOW PF00467.24 gi|385804229|ref|YP_005840629.1| - 0.05 13.3 0.1 0.15 11.8 0.0 1.9 1 0 0 1 1 1 0 KOW motif KOW PF00467.24 gi|385804230|ref|YP_005840630.1| - 9e-05 22.0 0.8 0.00017 21.1 0.6 1.5 1 0 0 1 1 1 1 KOW motif Ribosomal_L14 PF00238.14 gi|385804231|ref|YP_005840631.1| - 2.7e-37 127.2 0.1 3e-37 127.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.15 gi|385804232|ref|YP_005840632.1| - 5.7e-28 96.7 0.5 6.9e-28 96.4 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 UPF0086 PF01868.11 gi|385804233|ref|YP_005840633.1| - 7.9e-22 76.7 0.2 9.6e-14 50.8 0.0 3.1 2 1 0 2 2 2 2 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.18 gi|385804234|ref|YP_005840634.1| - 2.1e-18 65.7 0.2 2.3e-18 65.6 0.1 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein FUSC-like PF12805.2 gi|385804234|ref|YP_005840634.1| - 0.052 12.4 0.0 0.059 12.2 0.0 1.0 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS KH_2 PF07650.12 gi|385804235|ref|YP_005840635.1| - 2.9e-15 55.5 0.0 6.4e-15 54.4 0.0 1.6 1 0 0 1 1 1 1 KH domain Ribosomal_S3_C PF00189.15 gi|385804235|ref|YP_005840635.1| - 6.8e-15 55.0 0.3 1.1e-14 54.4 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_1 PF00013.24 gi|385804235|ref|YP_005840635.1| - 0.0018 17.8 0.1 0.0018 17.8 0.1 2.3 2 0 0 2 2 2 1 KH domain NEAT PF05031.7 gi|385804235|ref|YP_005840635.1| - 0.01 15.8 0.7 0.024 14.6 0.5 1.6 1 0 0 1 1 1 0 Iron Transport-associated domain KH_3 PF13014.1 gi|385804235|ref|YP_005840635.1| - 0.01 15.4 0.9 0.055 13.1 0.6 2.3 1 0 0 1 1 1 0 KH domain KH_5 PF13184.1 gi|385804235|ref|YP_005840635.1| - 0.022 14.5 0.0 0.091 12.5 0.0 2.0 2 0 0 2 2 2 0 NusA-like KH domain KH_4 PF13083.1 gi|385804235|ref|YP_005840635.1| - 0.27 10.9 0.1 0.27 10.9 0.1 2.3 2 1 0 2 2 2 0 KH domain Ribosomal_L22 PF00237.14 gi|385804236|ref|YP_005840636.1| - 6.4e-24 83.9 0.0 7.5e-24 83.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.16 gi|385804237|ref|YP_005840637.1| - 1.8e-27 94.7 0.0 2.5e-27 94.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L2_C PF03947.13 gi|385804238|ref|YP_005840638.1| - 2.4e-46 156.7 0.9 3.3e-46 156.3 0.6 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|385804238|ref|YP_005840638.1| - 7.4e-15 54.6 0.0 2.4e-14 53.0 0.0 1.9 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|385804239|ref|YP_005840639.1| - 5.2e-17 61.5 0.6 9.9e-17 60.6 0.4 1.4 1 1 0 1 1 1 1 Ribosomal protein L23 P2 PF07194.6 gi|385804239|ref|YP_005840639.1| - 0.0028 17.4 2.1 0.0042 16.9 1.3 1.4 1 1 0 1 1 1 1 P2 response regulator binding domain Ribosomal_L4 PF00573.17 gi|385804240|ref|YP_005840640.1| - 1.4e-44 151.8 0.3 1.6e-44 151.6 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.17 gi|385804241|ref|YP_005840641.1| - 1.3e-83 280.4 0.0 2e-83 279.7 0.0 1.3 2 0 0 2 2 2 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.12 gi|385804242|ref|YP_005840642.1| - 6.4e-46 157.0 0.0 9.4e-46 156.4 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methyltransferase eIF-1a PF01176.14 gi|385804242|ref|YP_005840642.1| - 0.002 17.5 0.2 0.037 13.4 0.1 2.4 2 0 0 2 2 2 1 Translation initiation factor 1A / IF-1 DDE_Tnp_1 PF01609.16 gi|385804243|ref|YP_005840643.1| - 4.6e-20 72.0 0.0 6.1e-20 71.6 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.1 gi|385804243|ref|YP_005840643.1| - 0.0035 15.5 0.0 0.0054 14.9 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain group 1 DUF2015 PF09435.5 gi|385804243|ref|YP_005840643.1| - 0.039 13.7 0.2 0.097 12.4 0.1 1.7 1 0 0 1 1 1 0 Fungal protein of unknown function (DUF2015) TPR_16 PF13432.1 gi|385804244|ref|YP_005840644.1| - 0.34 11.6 3.3 0.32 11.7 0.3 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat DNA_ligase_ZBD PF03119.11 gi|385804244|ref|YP_005840644.1| - 0.38 10.4 2.4 1.3 8.7 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DisA_N PF02457.11 gi|385804245|ref|YP_005840645.1| - 1e-08 34.3 0.4 2.3e-08 33.2 0.3 1.6 1 1 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding DisA_N PF02457.11 gi|385804246|ref|YP_005840646.1| - 0.00074 18.6 0.0 0.0019 17.3 0.0 1.6 1 1 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding FMN_dh PF01070.13 gi|385804247|ref|YP_005840647.1| - 5.4e-127 423.5 0.0 6.3e-127 423.3 0.0 1.0 1 0 0 1 1 1 1 FMN-dependent dehydrogenase ThiG PF05690.9 gi|385804247|ref|YP_005840647.1| - 3.5e-07 29.5 0.1 0.0069 15.4 0.0 2.2 1 1 1 2 2 2 2 Thiazole biosynthesis protein ThiG IMPDH PF00478.20 gi|385804247|ref|YP_005840647.1| - 1.5e-05 24.1 2.5 1.5e-05 24.0 0.4 2.0 2 1 1 3 3 3 1 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.16 gi|385804247|ref|YP_005840647.1| - 0.00078 18.7 0.1 0.45 9.7 0.0 3.1 2 1 2 4 4 4 2 Histidine biosynthesis protein PcrB PF01884.12 gi|385804247|ref|YP_005840647.1| - 0.034 13.3 0.4 2.1 7.5 0.0 2.3 1 1 1 2 2 2 0 PcrB family Glu_synthase PF01645.12 gi|385804247|ref|YP_005840647.1| - 0.082 11.8 0.6 0.14 11.0 0.4 1.4 1 1 0 1 1 1 0 Conserved region in glutamate synthase NMO PF03060.10 gi|385804247|ref|YP_005840647.1| - 0.098 11.7 2.3 0.18 10.9 1.6 1.4 1 0 0 1 1 1 0 Nitronate monooxygenase DDE_5 PF13546.1 gi|385804248|ref|YP_005840648.1| - 5.5e-20 71.3 0.0 8.7e-20 70.6 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.16 gi|385804248|ref|YP_005840648.1| - 2.8e-17 62.9 0.4 5.2e-17 62.0 0.1 1.6 2 1 0 2 2 2 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|385804248|ref|YP_005840648.1| - 0.00011 21.3 0.5 0.00045 19.3 0.3 1.8 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_6 PF13751.1 gi|385804248|ref|YP_005840648.1| - 0.01 15.8 0.0 0.035 14.1 0.0 1.9 2 0 0 2 2 2 0 Transposase DDE domain PGA_cap PF09587.5 gi|385804249|ref|YP_005840649.1| - 2.6e-65 220.2 0.1 3.4e-65 219.8 0.1 1.2 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap CarboxypepD_reg PF13620.1 gi|385804249|ref|YP_005840649.1| - 1.2e-06 28.4 0.1 5.2e-06 26.4 0.1 2.1 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain AP_endonuc_2 PF01261.19 gi|385804249|ref|YP_005840649.1| - 0.0052 16.0 0.1 0.085 12.1 0.0 2.3 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel UCR_Fe-S_N PF10399.4 gi|385804249|ref|YP_005840649.1| - 0.022 13.8 0.2 0.022 13.8 0.1 2.2 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal eIF-5_eIF-2B PF01873.12 gi|385804250|ref|YP_005840650.1| - 6.6e-27 93.6 0.0 9.1e-27 93.1 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|385804250|ref|YP_005840650.1| - 2.2e-09 36.9 2.1 3.9e-09 36.1 1.4 1.4 1 0 0 1 1 1 1 TRAM domain DUF2387 PF09526.5 gi|385804250|ref|YP_005840650.1| - 0.041 13.8 2.8 0.29 11.1 1.8 2.2 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) DUF35_N PF12172.3 gi|385804250|ref|YP_005840650.1| - 0.065 13.1 0.3 9.5 6.2 0.0 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DNA_RNApol_7kD PF03604.8 gi|385804250|ref|YP_005840650.1| - 0.085 12.3 0.5 13 5.4 0.0 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Lar_restr_allev PF14354.1 gi|385804250|ref|YP_005840650.1| - 0.31 11.3 2.4 2.5 8.4 1.7 2.1 1 1 0 1 1 1 0 Restriction alleviation protein Lar DS PF01916.12 gi|385804252|ref|YP_005840652.1| - 4.7e-73 245.9 0.0 1.7e-51 175.1 0.0 2.0 2 0 0 2 2 2 2 Deoxyhypusine synthase Peptidase_M22 PF00814.20 gi|385804252|ref|YP_005840652.1| - 0.0086 15.6 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 Glycoprotease family Med8 PF10232.4 gi|385804252|ref|YP_005840652.1| - 0.01 15.3 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 0 Mediator of RNA polymerase II transcription complex subunit 8 DDE_Tnp_1 PF01609.16 gi|385804253|ref|YP_005840653.1| - 1.5e-11 44.2 0.0 2.4e-11 43.5 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|385804253|ref|YP_005840653.1| - 0.0011 18.0 0.0 0.0016 17.5 0.0 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_2 PF13586.1 gi|385804253|ref|YP_005840653.1| - 0.0032 17.6 0.0 0.0078 16.3 0.0 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|385804253|ref|YP_005840653.1| - 0.18 11.8 0.0 0.31 11.0 0.0 1.3 1 0 0 1 1 1 0 Transposase DDE domain NIF3 PF01784.13 gi|385804254|ref|YP_005840654.1| - 1e-47 162.7 0.0 1.2e-47 162.5 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) PhoQ_Sensor PF08918.5 gi|385804255|ref|YP_005840655.1| - 0.12 11.8 1.8 11 5.5 0.0 2.8 3 0 0 3 3 3 0 PhoQ Sensor TMEM191C PF15194.1 gi|385804256|ref|YP_005840656.1| - 0.037 13.9 0.0 0.04 13.8 0.0 1.1 1 0 0 1 1 1 0 TMEM191C family zf-C2H2 PF00096.21 gi|385804256|ref|YP_005840656.1| - 0.058 13.7 3.4 0.1 13.0 2.3 1.5 1 1 0 1 1 1 0 Zinc finger, C2H2 type zf-H2C2_2 PF13465.1 gi|385804256|ref|YP_005840656.1| - 0.11 12.7 0.1 0.11 12.7 0.1 1.6 2 0 0 2 2 2 0 Zinc-finger double domain NinG PF05766.7 gi|385804256|ref|YP_005840656.1| - 0.13 11.9 0.0 0.15 11.8 0.0 1.0 1 0 0 1 1 1 0 Bacteriophage Lambda NinG protein zf-C2H2_4 PF13894.1 gi|385804256|ref|YP_005840656.1| - 0.82 10.1 3.2 1.3 9.5 2.2 1.4 1 0 0 1 1 1 0 C2H2-type zinc finger Iron_transport PF10634.4 gi|385804257|ref|YP_005840657.1| - 1.5e-05 24.9 0.1 0.01 15.7 0.0 2.5 2 2 0 2 2 2 2 Fe2+ transport protein CoA_binding PF02629.14 gi|385804258|ref|YP_005840658.1| - 6.8e-24 84.2 2.1 1.4e-23 83.2 0.5 2.2 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|385804258|ref|YP_005840658.1| - 2.1e-13 50.1 0.9 4.2e-13 49.1 0.6 1.5 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|385804258|ref|YP_005840658.1| - 4.6e-08 32.7 0.0 7.4e-08 32.0 0.0 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|385804258|ref|YP_005840658.1| - 5.9e-07 29.6 0.0 3.6e-05 23.8 0.0 2.2 2 0 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|385804258|ref|YP_005840658.1| - 0.09 13.3 0.1 0.28 11.6 0.0 1.9 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold ATP-grasp_2 PF08442.5 gi|385804259|ref|YP_005840659.1| - 8.2e-64 214.7 0.2 1.3e-63 214.0 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|385804259|ref|YP_005840659.1| - 8.1e-19 67.7 1.5 9.5e-19 67.4 0.4 1.6 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|385804259|ref|YP_005840659.1| - 1.6e-12 47.3 1.6 1.6e-12 47.3 1.1 1.7 2 0 0 2 2 2 1 CoA-ligase CPSase_L_D2 PF02786.12 gi|385804259|ref|YP_005840659.1| - 6.8e-10 38.5 1.8 9.3e-09 34.8 0.2 2.2 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.1 gi|385804259|ref|YP_005840659.1| - 9.5e-09 35.2 0.7 4.8e-08 32.9 0.0 2.3 3 0 0 3 3 3 1 ATP-grasp domain GARS_A PF01071.14 gi|385804259|ref|YP_005840659.1| - 5.8e-07 29.2 2.4 7.3e-07 28.9 0.1 2.0 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.17 gi|385804259|ref|YP_005840659.1| - 6.8e-07 28.7 0.0 1.3e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Ribonuc_red_lgC PF02867.10 gi|385804260|ref|YP_005840660.1| - 3.6e-134 448.2 0.2 4e-102 342.5 0.0 3.2 3 0 0 3 3 3 3 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|385804260|ref|YP_005840660.1| - 3e-27 94.2 0.0 1.5e-26 91.9 0.0 2.3 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain TSCPD PF12637.2 gi|385804260|ref|YP_005840660.1| - 1.7e-26 91.9 0.0 7.4e-26 89.9 0.0 2.2 2 0 0 2 2 2 1 TSCPD domain Intein_splicing PF14890.1 gi|385804260|ref|YP_005840660.1| - 8.2e-21 74.2 0.0 9e-15 54.3 0.0 2.5 2 0 0 2 2 2 2 Intein splicing domain LAGLIDADG_3 PF14528.1 gi|385804260|ref|YP_005840660.1| - 1.7e-08 34.5 0.0 0.0039 17.3 0.0 4.5 5 0 0 5 5 5 2 LAGLIDADG-like domain PT-HINT PF07591.6 gi|385804260|ref|YP_005840660.1| - 1.7e-07 31.1 0.0 0.036 13.9 0.0 3.5 3 0 0 3 3 3 2 Pretoxin HINT domain Hint PF01079.15 gi|385804260|ref|YP_005840660.1| - 9.3e-06 24.9 0.0 0.00017 20.8 0.0 2.5 2 0 0 2 2 2 1 Hint module LAGLIDADG_WhiA PF14527.1 gi|385804260|ref|YP_005840660.1| - 0.019 14.8 0.1 3.8 7.4 0.0 3.5 3 0 0 3 3 3 0 WhiA LAGLIDADG-like domain zf-Mss51 PF13824.1 gi|385804261|ref|YP_005840661.1| - 0.071 12.9 6.7 0.088 12.6 4.6 1.1 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Lar_restr_allev PF14354.1 gi|385804261|ref|YP_005840661.1| - 1.4 9.2 5.6 1.9 8.8 3.9 1.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar SQS_PSY PF00494.14 gi|385804262|ref|YP_005840662.1| - 4.9e-64 216.2 8.6 6.5e-64 215.7 6.0 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase DUF422 PF04240.7 gi|385804263|ref|YP_005840663.1| - 1.3e-78 263.2 14.8 1.6e-78 263.0 10.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF422) DUF2512 PF10710.4 gi|385804263|ref|YP_005840663.1| - 0.85 9.0 8.9 0.041 13.3 0.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2512) UbiA PF01040.13 gi|385804264|ref|YP_005840664.1| - 1.5e-24 86.6 23.5 2.1e-24 86.1 16.3 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Amino_oxidase PF01593.19 gi|385804265|ref|YP_005840665.1| - 1.3e-21 77.2 0.1 3.6e-21 75.7 0.1 1.7 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|385804265|ref|YP_005840665.1| - 1.4e-17 63.5 0.0 3.7e-17 62.0 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|385804265|ref|YP_005840665.1| - 4.7e-14 52.0 3.0 1.5e-08 33.9 0.6 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|385804265|ref|YP_005840665.1| - 6.9e-10 39.1 0.9 1.2e-06 28.8 0.2 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|385804265|ref|YP_005840665.1| - 8.8e-07 27.7 0.0 0.00042 18.9 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|385804265|ref|YP_005840665.1| - 2.4e-06 26.6 2.1 3.3e-06 26.2 0.4 1.9 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|385804265|ref|YP_005840665.1| - 3.3e-06 27.3 0.0 0.0018 18.3 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|385804265|ref|YP_005840665.1| - 6.9e-06 26.0 0.0 5.7e-05 23.0 0.1 2.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|385804265|ref|YP_005840665.1| - 8.4e-05 21.7 0.6 0.00013 21.1 0.4 1.3 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|385804265|ref|YP_005840665.1| - 0.00012 21.2 0.4 0.00023 20.3 0.3 1.4 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|385804265|ref|YP_005840665.1| - 0.0003 19.9 0.0 0.00042 19.5 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|385804265|ref|YP_005840665.1| - 0.0032 17.7 0.0 0.0055 16.9 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Strep_67kDa_ant PF06100.6 gi|385804265|ref|YP_005840665.1| - 0.0052 15.1 0.0 0.0077 14.6 0.0 1.2 1 0 0 1 1 1 1 Streptococcal 67 kDa myosin-cross-reactive antigen like family GDI PF00996.13 gi|385804265|ref|YP_005840665.1| - 0.0058 15.0 0.2 2.2 6.5 0.0 2.2 2 0 0 2 2 2 2 GDP dissociation inhibitor GIDA PF01134.17 gi|385804265|ref|YP_005840665.1| - 0.025 13.4 0.3 0.039 12.7 0.2 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A AlaDh_PNT_C PF01262.16 gi|385804265|ref|YP_005840665.1| - 0.049 13.2 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|385804265|ref|YP_005840665.1| - 0.063 12.6 0.3 0.11 11.8 0.2 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.9 gi|385804265|ref|YP_005840665.1| - 0.13 10.8 0.2 0.22 10.1 0.2 1.3 1 0 0 1 1 1 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|385804265|ref|YP_005840665.1| - 0.19 11.5 0.8 1.4 8.6 0.1 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding Usp PF00582.21 gi|385804266|ref|YP_005840666.1| - 2.2e-12 47.3 1.2 2.6e-12 47.1 0.8 1.1 1 0 0 1 1 1 1 Universal stress protein family NYN PF01936.13 gi|385804267|ref|YP_005840667.1| - 2e-20 73.5 0.1 3.3e-20 72.8 0.1 1.3 1 0 0 1 1 1 1 NYN domain TatD_DNase PF01026.16 gi|385804268|ref|YP_005840668.1| - 4.5e-23 81.7 0.0 1e-21 77.3 0.0 2.0 1 1 0 1 1 1 1 TatD related DNase DUF2150 PF09920.4 gi|385804269|ref|YP_005840669.1| - 4.3e-72 241.7 8.0 4.8e-72 241.5 5.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) HrpJ PF07201.6 gi|385804269|ref|YP_005840669.1| - 0.024 14.6 1.1 0.23 11.4 0.6 2.0 2 0 0 2 2 2 0 HrpJ-like domain HMG_CoA_synt_N PF01154.12 gi|385804270|ref|YP_005840670.1| - 4.7e-25 88.1 0.0 8.1e-25 87.3 0.0 1.4 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.5 gi|385804270|ref|YP_005840670.1| - 1.1e-19 71.0 0.0 2.3e-19 69.9 0.0 1.5 2 0 0 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HTH_31 PF13560.1 gi|385804271|ref|YP_005840671.1| - 4.4e-09 36.4 0.0 1.6e-08 34.6 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|385804271|ref|YP_005840671.1| - 3.5e-08 33.3 0.0 8.4e-08 32.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|385804271|ref|YP_005840671.1| - 5.9e-08 32.4 0.0 1.6e-07 31.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_11 PF08279.7 gi|385804271|ref|YP_005840671.1| - 0.032 13.8 0.1 0.34 10.6 0.0 2.5 3 0 0 3 3 3 0 HTH domain DUF457 PF04307.9 gi|385804272|ref|YP_005840672.1| - 1e-09 37.9 1.7 1.1e-09 37.7 1.2 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Acetyltransf_1 PF00583.19 gi|385804273|ref|YP_005840673.1| - 2.5e-13 49.8 0.0 4.4e-13 49.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|385804273|ref|YP_005840673.1| - 9.5e-09 35.4 0.0 1.5e-08 34.8 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|385804273|ref|YP_005840673.1| - 8.8e-08 32.1 0.0 1.4e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|385804273|ref|YP_005840673.1| - 6.4e-06 26.2 0.0 1e-05 25.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|385804273|ref|YP_005840673.1| - 4.3e-05 23.6 0.0 5.3e-05 23.4 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|385804273|ref|YP_005840673.1| - 4.4e-05 23.2 0.0 0.00012 21.8 0.0 1.7 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|385804273|ref|YP_005840673.1| - 0.0049 16.7 0.0 0.0093 15.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|385804273|ref|YP_005840673.1| - 0.025 14.5 0.0 0.06 13.2 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|385804273|ref|YP_005840673.1| - 0.028 14.1 0.0 0.05 13.3 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein TauE PF01925.14 gi|385804274|ref|YP_005840674.1| - 0.033 13.6 23.0 0.045 13.1 15.9 1.1 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE DUF3817 PF12823.2 gi|385804274|ref|YP_005840674.1| - 1.5 9.2 6.6 0.14 12.5 1.1 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF3817) RseC_MucC PF04246.7 gi|385804274|ref|YP_005840674.1| - 6.4 6.3 12.1 0.36 10.4 1.9 2.5 2 1 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC tRNA_SAD PF07973.9 gi|385804275|ref|YP_005840675.1| - 1.4e-11 44.0 0.0 2.5e-11 43.2 0.0 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|385804275|ref|YP_005840675.1| - 1.9e-10 39.6 0.1 2.9e-10 39.0 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.14 gi|385804275|ref|YP_005840675.1| - 0.013 15.1 3.0 0.027 14.1 1.0 2.3 2 0 0 2 2 2 0 DHHA1 domain HTH_31 PF13560.1 gi|385804276|ref|YP_005840676.1| - 0.0099 16.0 2.5 0.035 14.3 0.1 2.6 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|385804276|ref|YP_005840676.1| - 0.014 14.9 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PhnA_Zn_Ribbon PF08274.7 gi|385804276|ref|YP_005840676.1| - 0.015 15.0 1.4 0.034 13.9 1.0 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon MRI PF15325.1 gi|385804276|ref|YP_005840676.1| - 0.044 14.7 0.9 0.065 14.2 0.6 1.3 1 0 0 1 1 1 0 Modulator of retrovirus infection FLO_LFY PF01698.11 gi|385804276|ref|YP_005840676.1| - 0.073 11.9 0.1 0.082 11.7 0.1 1.1 1 0 0 1 1 1 0 Floricaula / Leafy protein Toprim_4 PF13662.1 gi|385804278|ref|YP_005840678.1| - 0.014 15.3 0.1 0.017 15.0 0.1 1.2 1 0 0 1 1 1 0 Toprim domain zf-ribbon_3 PF13248.1 gi|385804279|ref|YP_005840679.1| - 4.5e-05 22.4 0.9 6.8e-05 21.9 0.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|385804279|ref|YP_005840679.1| - 0.00018 20.8 1.1 0.0003 20.1 0.8 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|385804279|ref|YP_005840679.1| - 0.00056 19.6 0.3 0.00086 19.0 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon NOB1_Zn_bind PF08772.6 gi|385804279|ref|YP_005840679.1| - 0.029 14.2 0.6 0.074 12.8 0.4 1.6 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like UPF0547 PF10571.4 gi|385804279|ref|YP_005840679.1| - 0.097 12.3 0.2 0.19 11.4 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-RING_4 PF14570.1 gi|385804279|ref|YP_005840679.1| - 0.11 12.1 0.5 0.19 11.3 0.4 1.3 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain Phage_integrase PF00589.17 gi|385804280|ref|YP_005840680.1| - 8e-11 41.9 0.2 1.3e-10 41.1 0.2 1.3 1 0 0 1 1 1 1 Phage integrase family DUF420 PF04238.7 gi|385804281|ref|YP_005840681.1| - 6.4e-38 129.7 14.1 6.4e-38 129.7 9.8 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.4 gi|385804281|ref|YP_005840681.1| - 0.002 18.2 17.3 0.0072 16.4 7.5 3.1 1 1 3 4 4 4 2 Predicted membrane protein (DUF2306) DUF1240 PF06836.7 gi|385804281|ref|YP_005840681.1| - 0.014 15.6 3.6 0.014 15.6 2.5 2.5 1 1 1 3 3 3 0 Protein of unknown function (DUF1240) RrnaAD PF00398.15 gi|385804282|ref|YP_005840682.1| - 9.6e-50 169.0 0.0 1.1e-49 168.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|385804282|ref|YP_005840682.1| - 5.8e-09 36.0 0.1 1.4e-08 34.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385804282|ref|YP_005840682.1| - 0.0005 20.6 0.0 0.001 19.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|385804282|ref|YP_005840682.1| - 0.015 14.7 0.0 0.055 12.8 0.0 1.8 2 0 0 2 2 2 0 Nodulation protein S (NodS) MTS PF05175.9 gi|385804282|ref|YP_005840682.1| - 0.023 14.0 0.0 0.047 13.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|385804282|ref|YP_005840682.1| - 0.041 14.3 0.2 0.15 12.5 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385804282|ref|YP_005840682.1| - 0.17 11.4 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_26 PF13659.1 gi|385804283|ref|YP_005840683.1| - 1.5e-16 60.4 0.1 2.2e-16 59.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|385804283|ref|YP_005840683.1| - 1.4e-12 47.3 0.0 1.8e-12 46.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|385804283|ref|YP_005840683.1| - 3.5e-06 27.5 0.0 5.8e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|385804283|ref|YP_005840683.1| - 5.4e-05 23.6 0.0 0.00054 20.3 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|385804283|ref|YP_005840683.1| - 0.0001 22.7 0.0 0.00095 19.5 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|385804283|ref|YP_005840683.1| - 0.00057 19.4 0.0 0.00076 19.0 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|385804283|ref|YP_005840683.1| - 0.001 18.6 0.0 0.0013 18.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|385804283|ref|YP_005840683.1| - 0.0011 18.6 0.0 0.0054 16.4 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|385804283|ref|YP_005840683.1| - 0.0048 17.2 0.0 0.0068 16.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DUF938 PF06080.7 gi|385804283|ref|YP_005840683.1| - 0.013 15.0 0.1 0.02 14.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) PrmA PF06325.8 gi|385804283|ref|YP_005840683.1| - 0.014 14.5 0.4 0.025 13.7 0.1 1.5 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_3 PF01596.12 gi|385804283|ref|YP_005840683.1| - 0.018 14.1 0.0 0.056 12.4 0.0 1.7 2 0 0 2 2 2 0 O-methyltransferase UPF0146 PF03686.8 gi|385804283|ref|YP_005840683.1| - 0.057 13.2 0.0 0.095 12.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) Ubie_methyltran PF01209.13 gi|385804283|ref|YP_005840683.1| - 0.13 11.3 0.0 0.3 10.1 0.0 1.5 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family Meth_synt_1 PF08267.7 gi|385804284|ref|YP_005840684.1| - 1.6e-21 76.9 0.0 5.1e-20 71.9 0.0 2.0 1 1 1 2 2 2 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.13 gi|385804284|ref|YP_005840684.1| - 1.4e-05 24.2 0.0 3.3e-05 23.0 0.0 1.6 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain PIG-L PF02585.12 gi|385804284|ref|YP_005840684.1| - 0.047 14.1 0.0 0.082 13.4 0.0 1.4 1 0 0 1 1 1 0 GlcNAc-PI de-N-acetylase Meth_synt_2 PF01717.13 gi|385804285|ref|YP_005840685.1| - 1.9e-76 257.1 0.0 2.3e-76 256.8 0.0 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|385804285|ref|YP_005840685.1| - 2.1e-20 73.2 0.0 3.9e-20 72.3 0.0 1.4 1 1 1 2 2 2 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|385804285|ref|YP_005840685.1| - 9.6e-05 21.4 0.0 0.00014 20.9 0.0 1.2 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) NDK PF00334.14 gi|385804286|ref|YP_005840686.1| - 4.2e-54 182.0 0.0 4.7e-54 181.8 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.15 gi|385804287|ref|YP_005840687.1| - 6e-23 80.4 0.0 6.5e-23 80.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e Ribosomal_S28e PF01200.13 gi|385804288|ref|YP_005840688.1| - 7.8e-28 96.0 0.9 8.1e-28 95.9 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.21 gi|385804289|ref|YP_005840689.1| - 9.2e-24 82.7 0.0 1.1e-23 82.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|385804289|ref|YP_005840689.1| - 0.0001 22.0 0.0 0.00014 21.5 0.0 1.2 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.10 gi|385804289|ref|YP_005840689.1| - 0.0017 18.5 0.1 0.0035 17.5 0.1 1.5 1 1 0 1 1 1 1 eRF1 domain 3 DUF1269 PF06897.7 gi|385804289|ref|YP_005840689.1| - 0.24 11.4 2.7 1.9 8.5 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1269) DUF456 PF04306.8 gi|385804290|ref|YP_005840690.1| - 1e-24 87.1 26.6 1e-24 87.1 18.4 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF456) PsbM PF05151.7 gi|385804290|ref|YP_005840690.1| - 0.14 11.7 9.6 1.7 8.3 0.5 3.2 3 0 0 3 3 3 0 Photosystem II reaction centre M protein (PsbM) Cyclase PF04199.8 gi|385804291|ref|YP_005840691.1| - 1.5e-23 83.3 1.2 2.1e-23 82.8 0.9 1.2 1 0 0 1 1 1 1 Putative cyclase tRNA-synt_1c PF00749.16 gi|385804292|ref|YP_005840692.1| - 3.1e-55 187.0 0.0 4e-55 186.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|385804292|ref|YP_005840692.1| - 9.9e-20 70.9 0.0 2e-19 69.9 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain polyprenyl_synt PF00348.12 gi|385804293|ref|YP_005840693.1| - 2.2e-58 197.1 1.6 3e-58 196.7 1.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase NTPase_1 PF03266.10 gi|385804293|ref|YP_005840693.1| - 0.11 12.1 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 NTPase Lactamase_B PF00753.22 gi|385804294|ref|YP_005840694.1| - 4.9e-11 42.6 5.5 2.3e-10 40.4 3.8 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|385804294|ref|YP_005840694.1| - 3.1e-06 26.8 2.1 5.9e-06 25.9 0.3 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|385804294|ref|YP_005840694.1| - 0.0014 18.3 3.3 0.0016 18.1 0.4 2.4 3 0 0 3 3 3 1 RNA-metabolising metallo-beta-lactamase PDEase_II PF02112.10 gi|385804294|ref|YP_005840694.1| - 0.087 11.7 0.1 0.14 11.0 0.1 1.2 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II LSM PF01423.17 gi|385804295|ref|YP_005840695.1| - 7.5e-14 51.0 0.0 1.1e-13 50.5 0.0 1.3 1 1 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|385804295|ref|YP_005840695.1| - 1.9e-05 24.4 0.0 2.7e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain DUF4440 PF14534.1 gi|385804295|ref|YP_005840695.1| - 0.017 15.3 0.1 0.019 15.1 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4440) Ribosomal_L37e PF01907.14 gi|385804296|ref|YP_005840696.1| - 7.8e-25 86.4 12.7 8.4e-25 86.3 8.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|385804296|ref|YP_005840696.1| - 0.00051 19.7 2.6 0.00059 19.5 1.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|385804296|ref|YP_005840696.1| - 0.029 13.5 4.8 0.13 11.5 3.3 1.9 1 1 2 3 3 3 0 zinc-ribbon domain Ribosomal_L32p PF01783.18 gi|385804296|ref|YP_005840696.1| - 0.04 14.1 3.2 0.055 13.6 2.2 1.3 1 0 0 1 1 1 0 Ribosomal L32p protein family DUF2616 PF11077.3 gi|385804296|ref|YP_005840696.1| - 0.043 13.3 0.2 0.045 13.2 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2616) HypA PF01155.14 gi|385804296|ref|YP_005840696.1| - 0.057 13.0 2.0 0.065 12.9 1.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family FYVE_2 PF02318.11 gi|385804296|ref|YP_005840696.1| - 0.081 12.8 2.6 0.088 12.7 1.8 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger zinc_ribbon_6 PF14599.1 gi|385804296|ref|YP_005840696.1| - 0.13 12.1 1.8 0.16 11.7 1.2 1.2 1 0 0 1 1 1 0 Zinc-ribbon Zn_Tnp_IS91 PF14319.1 gi|385804296|ref|YP_005840696.1| - 0.17 11.3 3.0 0.19 11.2 2.1 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain Baculo_ME53 PF06061.6 gi|385804296|ref|YP_005840696.1| - 0.19 10.6 3.2 0.21 10.5 2.2 1.0 1 0 0 1 1 1 0 Baculoviridae ME53 zf-piccolo PF05715.8 gi|385804296|ref|YP_005840696.1| - 0.43 10.6 5.1 5.5 7.0 3.5 2.0 1 1 0 1 1 1 0 Piccolo Zn-finger zinc_ribbon_2 PF13240.1 gi|385804296|ref|YP_005840696.1| - 0.66 9.5 6.1 3.5 7.2 4.3 1.9 1 1 1 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|385804296|ref|YP_005840696.1| - 1 9.0 8.0 0.82 9.3 5.0 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2H2_3 PF13878.1 gi|385804296|ref|YP_005840696.1| - 1.2 8.7 8.7 5 6.7 0.9 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO RNA_POL_M_15KD PF02150.11 gi|385804296|ref|YP_005840696.1| - 1.2 8.8 5.7 3.8 7.2 0.3 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit GATase_7 PF13537.1 gi|385804297|ref|YP_005840697.1| - 2.9e-23 81.9 0.0 1.2e-22 80.0 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|385804297|ref|YP_005840697.1| - 7.5e-23 80.9 0.2 2.1e-22 79.5 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|385804297|ref|YP_005840697.1| - 1e-20 73.7 0.0 3.6e-15 55.5 0.0 3.2 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|385804297|ref|YP_005840697.1| - 4.7e-12 45.7 0.1 1.4e-11 44.2 0.1 1.7 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|385804297|ref|YP_005840697.1| - 0.0048 15.6 0.0 0.0081 14.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DUF655 PF04919.7 gi|385804298|ref|YP_005840698.1| - 5e-62 208.8 0.1 5.8e-62 208.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.2 gi|385804298|ref|YP_005840698.1| - 1.2e-05 25.1 0.0 2.6e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|385804298|ref|YP_005840698.1| - 0.0051 16.8 0.0 0.014 15.4 0.0 1.9 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|385804298|ref|YP_005840698.1| - 0.043 13.9 0.0 0.12 12.5 0.0 1.7 1 1 0 1 1 1 0 Helix-hairpin-helix domain RNA_pol_Rpb4 PF03874.11 gi|385804299|ref|YP_005840699.1| - 7.3e-15 55.0 0.6 8.3e-15 54.8 0.4 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb4 VIT1 PF01988.14 gi|385804299|ref|YP_005840699.1| - 0.19 11.2 0.2 0.21 11.0 0.1 1.2 1 0 0 1 1 1 0 VIT family Ribosomal_L21e PF01157.13 gi|385804300|ref|YP_005840700.1| - 2.2e-31 107.5 0.1 2.4e-31 107.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e YiaAB PF05360.9 gi|385804301|ref|YP_005840701.1| - 1.3 8.6 7.2 1.8 8.1 5.0 1.2 1 0 0 1 1 1 0 yiaA/B two helix domain EF1_GNE PF00736.14 gi|385804302|ref|YP_005840702.1| - 1.4e-21 75.9 0.1 1.5e-21 75.8 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF3073 PF11273.3 gi|385804302|ref|YP_005840702.1| - 0.061 13.8 0.0 0.079 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3073) DUF1610 PF07754.6 gi|385804303|ref|YP_005840703.1| - 2e-08 34.1 18.5 7.6e-05 22.7 3.7 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) DZR PF12773.2 gi|385804303|ref|YP_005840703.1| - 0.025 14.3 14.7 7.7 6.4 10.2 2.3 1 1 0 1 1 1 0 Double zinc ribbon zf-UBP PF02148.14 gi|385804303|ref|YP_005840703.1| - 0.09 12.8 1.3 0.09 12.8 0.9 2.4 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein OrfB_Zn_ribbon PF07282.6 gi|385804303|ref|YP_005840703.1| - 0.092 12.4 12.5 0.31 10.7 1.8 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-Mss51 PF13824.1 gi|385804303|ref|YP_005840703.1| - 0.14 12.0 15.6 1.9 8.3 3.0 3.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2039 PF10217.4 gi|385804303|ref|YP_005840703.1| - 0.22 11.5 8.0 0.35 10.9 5.5 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) NMDAR2_C PF10565.4 gi|385804303|ref|YP_005840703.1| - 0.37 9.4 9.0 0.4 9.3 6.2 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus DUF2387 PF09526.5 gi|385804303|ref|YP_005840703.1| - 0.69 9.8 0.2 0.69 9.8 0.1 2.4 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) PolC_DP2 PF03833.8 gi|385804303|ref|YP_005840703.1| - 0.87 7.1 7.8 0.89 7.1 5.4 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 C1_3 PF07649.7 gi|385804303|ref|YP_005840703.1| - 0.94 9.5 14.2 0.24 11.4 1.9 2.4 2 1 0 2 2 2 0 C1-like domain zf-tcix PF14952.1 gi|385804303|ref|YP_005840703.1| - 0.96 8.8 0.0 0.96 8.8 0.0 3.7 2 1 1 3 3 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-RING_5 PF14634.1 gi|385804303|ref|YP_005840703.1| - 1.3 8.8 12.9 3.6 7.3 1.4 2.3 1 1 1 2 2 2 0 zinc-RING finger domain zinc_ribbon_2 PF13240.1 gi|385804303|ref|YP_005840703.1| - 1.4 8.5 17.9 13 5.4 0.3 3.9 3 1 1 4 4 4 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|385804303|ref|YP_005840703.1| - 1.4 8.7 20.3 1.2 9.0 9.4 2.9 1 1 0 2 2 2 0 Transposase zinc-ribbon domain FYVE_2 PF02318.11 gi|385804303|ref|YP_005840703.1| - 3 7.7 9.2 3.3 7.6 6.4 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger C1_1 PF00130.17 gi|385804303|ref|YP_005840703.1| - 3 7.6 12.1 1.8 8.3 1.3 2.2 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-H2C2_2 PF13465.1 gi|385804303|ref|YP_005840703.1| - 3.2 8.2 14.1 12 6.4 2.7 3.8 3 1 1 4 4 4 0 Zinc-finger double domain DNA_RNApol_7kD PF03604.8 gi|385804303|ref|YP_005840703.1| - 3.5 7.1 17.6 7.8 6.0 3.9 3.5 2 2 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS91 PF14319.1 gi|385804303|ref|YP_005840703.1| - 3.5 7.1 11.9 4.7 6.7 8.2 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain IBR PF01485.16 gi|385804303|ref|YP_005840703.1| - 5.9 6.8 14.3 1e+02 2.8 10.5 2.1 1 1 1 2 2 2 0 IBR domain RNHCP PF12647.2 gi|385804303|ref|YP_005840703.1| - 9 6.2 12.7 7.5 6.4 1.4 2.2 1 1 1 2 2 2 0 RNHCP domain TctA PF01970.11 gi|385804304|ref|YP_005840704.1| - 4e-60 203.3 43.4 5.5e-60 202.9 30.1 1.2 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Ribosomal_60s PF00428.14 gi|385804305|ref|YP_005840705.1| - 2.8e-11 43.6 34.3 1.2e-10 41.5 23.8 1.8 1 1 0 1 1 1 1 60s Acidic ribosomal protein TFIID_30kDa PF03540.8 gi|385804305|ref|YP_005840705.1| - 0.085 12.7 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Transcription initiation factor TFIID 23-30kDa subunit RRN3 PF05327.6 gi|385804305|ref|YP_005840705.1| - 0.18 9.8 4.8 0.24 9.4 3.3 1.2 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 Penicil_amidase PF01804.13 gi|385804305|ref|YP_005840705.1| - 0.42 9.6 2.6 0.45 9.4 1.8 1.0 1 0 0 1 1 1 0 Penicillin amidase NOA36 PF06524.7 gi|385804305|ref|YP_005840705.1| - 0.45 9.7 6.9 0.49 9.5 4.8 1.1 1 0 0 1 1 1 0 NOA36 protein DUF1510 PF07423.6 gi|385804305|ref|YP_005840705.1| - 0.66 9.3 5.5 0.67 9.2 3.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) RR_TM4-6 PF06459.7 gi|385804305|ref|YP_005840705.1| - 1.1 9.0 6.5 1.3 8.8 4.5 1.0 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 BSP_II PF05432.6 gi|385804305|ref|YP_005840705.1| - 1.2 8.3 14.7 1.4 8.1 10.2 1.2 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) Cwf_Cwc_15 PF04889.7 gi|385804305|ref|YP_005840705.1| - 1.7 8.2 8.8 1.9 8.1 6.1 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein CDC45 PF02724.9 gi|385804305|ref|YP_005840705.1| - 2.7 5.8 6.4 2.9 5.8 4.4 1.1 1 0 0 1 1 1 0 CDC45-like protein RNA_pol_3_Rpc31 PF11705.3 gi|385804305|ref|YP_005840705.1| - 3.3 7.5 12.1 3.4 7.5 8.4 1.2 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 Daxx PF03344.10 gi|385804305|ref|YP_005840705.1| - 3.6 5.9 12.7 4.1 5.7 8.8 1.1 1 0 0 1 1 1 0 Daxx Family CENP-T PF15511.1 gi|385804305|ref|YP_005840705.1| - 3.9 6.6 11.1 4.5 6.4 7.7 1.0 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T Myc_N PF01056.13 gi|385804305|ref|YP_005840705.1| - 4.9 6.2 8.6 5.1 6.1 5.9 1.2 1 0 0 1 1 1 0 Myc amino-terminal region Sigma70_ner PF04546.8 gi|385804305|ref|YP_005840705.1| - 5.6 6.5 15.6 7.7 6.0 10.8 1.2 1 0 0 1 1 1 0 Sigma-70, non-essential region Exonuc_VIII PF06630.6 gi|385804305|ref|YP_005840705.1| - 6.7 5.9 9.2 3.8 6.8 5.0 1.5 1 1 1 2 2 2 0 Enterobacterial exodeoxyribonuclease VIII VID27 PF08553.5 gi|385804305|ref|YP_005840705.1| - 6.8 4.7 6.6 7.1 4.7 4.6 1.1 1 0 0 1 1 1 0 VID27 cytoplasmic protein DUF2457 PF10446.4 gi|385804305|ref|YP_005840705.1| - 9 4.8 16.3 11 4.6 11.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) Ribosomal_L10 PF00466.15 gi|385804306|ref|YP_005840706.1| - 8.4e-21 73.7 0.0 1.3e-20 73.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L10 Sporozoite_P67 PF05642.6 gi|385804306|ref|YP_005840706.1| - 0.23 9.3 7.4 0.34 8.7 5.2 1.2 1 0 0 1 1 1 0 Sporozoite P67 surface antigen CobT PF06213.7 gi|385804306|ref|YP_005840706.1| - 0.93 8.5 15.3 1.6 7.7 10.6 1.4 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT Ribosomal_L1 PF00687.16 gi|385804307|ref|YP_005840707.1| - 8.3e-44 149.5 0.0 9.8e-44 149.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family UvrB PF12344.3 gi|385804307|ref|YP_005840707.1| - 0.059 12.9 0.3 0.13 11.8 0.2 1.5 1 0 0 1 1 1 0 Ultra-violet resistance protein B RPAP3_C PF13877.1 gi|385804308|ref|YP_005840708.1| - 0.038 13.9 0.0 0.043 13.7 0.0 1.1 1 0 0 1 1 1 0 Potential Monad-binding region of RPAP3 BPL_LplA_LipB PF03099.14 gi|385804309|ref|YP_005840709.1| - 6.3e-22 77.9 0.0 1.1e-21 77.1 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.7 gi|385804309|ref|YP_005840709.1| - 1.4e-13 50.2 0.0 2.8e-13 49.2 0.0 1.6 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.12 gi|385804309|ref|YP_005840709.1| - 9.5e-13 47.6 0.1 1.7e-12 46.8 0.0 1.4 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_24 PF13412.1 gi|385804309|ref|YP_005840709.1| - 9.5e-05 21.7 0.0 0.00021 20.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|385804309|ref|YP_005840709.1| - 0.00044 20.0 0.1 0.0012 18.5 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|385804309|ref|YP_005840709.1| - 0.008 15.8 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_36 PF13730.1 gi|385804309|ref|YP_005840709.1| - 0.1 12.7 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|385804309|ref|YP_005840709.1| - 0.11 12.0 0.1 0.26 10.8 0.1 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain CPSase_L_D2 PF02786.12 gi|385804310|ref|YP_005840710.1| - 3.8e-74 248.5 0.1 6.5e-74 247.7 0.1 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|385804310|ref|YP_005840710.1| - 1.9e-41 140.5 1.6 7.5e-41 138.6 0.2 2.6 3 0 0 3 3 3 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|385804310|ref|YP_005840710.1| - 7.1e-36 122.4 0.0 1.8e-35 121.1 0.0 1.7 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.17 gi|385804310|ref|YP_005840710.1| - 1.7e-17 62.8 4.6 2.2e-17 62.4 1.8 2.3 2 0 0 2 2 2 1 Biotin-requiring enzyme ATP-grasp_4 PF13535.1 gi|385804310|ref|YP_005840710.1| - 2.2e-17 63.4 0.2 5.4e-17 62.1 0.1 1.6 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|385804310|ref|YP_005840710.1| - 2.3e-13 49.5 0.0 9.8e-13 47.5 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|385804310|ref|YP_005840710.1| - 5.9e-09 35.6 0.0 1.2e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|385804310|ref|YP_005840710.1| - 2.9e-08 33.2 0.3 9.8e-08 31.5 0.1 2.0 3 0 0 3 3 3 1 ATP-grasp domain Biotin_lipoyl_2 PF13533.1 gi|385804310|ref|YP_005840710.1| - 3.5e-06 26.5 3.1 0.072 12.7 0.0 3.6 3 1 1 4 4 4 2 Biotin-lipoyl like RimK PF08443.6 gi|385804310|ref|YP_005840710.1| - 0.00015 21.2 0.0 0.0024 17.3 0.0 2.2 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|385804310|ref|YP_005840710.1| - 0.0012 18.6 0.0 0.0029 17.4 0.0 1.7 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|385804310|ref|YP_005840710.1| - 0.0099 15.1 0.0 0.019 14.1 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Peptidase_M23 PF01551.17 gi|385804310|ref|YP_005840710.1| - 0.016 15.2 0.1 1.9 8.5 0.0 2.9 2 0 0 2 2 2 0 Peptidase family M23 GARS_A PF01071.14 gi|385804310|ref|YP_005840710.1| - 0.02 14.4 0.0 0.041 13.4 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GCV_H PF01597.14 gi|385804310|ref|YP_005840710.1| - 0.088 12.4 0.3 0.24 11.1 0.2 1.7 1 0 0 1 1 1 0 Glycine cleavage H-protein Semialdhyde_dh PF01118.19 gi|385804311|ref|YP_005840711.1| - 9.6e-31 106.6 0.0 2.3e-30 105.3 0.0 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|385804311|ref|YP_005840711.1| - 6.4e-30 104.3 0.0 9e-30 103.8 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|385804311|ref|YP_005840711.1| - 3.3e-05 23.7 0.0 9.9e-05 22.2 0.0 1.9 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.11 gi|385804311|ref|YP_005840711.1| - 0.00031 21.2 0.0 0.00067 20.1 0.0 1.5 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase GFO_IDH_MocA PF01408.17 gi|385804311|ref|YP_005840711.1| - 0.0096 16.4 0.0 0.019 15.5 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_10 PF13460.1 gi|385804311|ref|YP_005840711.1| - 0.094 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 NADH(P)-binding DUF3387 PF11867.3 gi|385804312|ref|YP_005840712.1| - 3.6e-84 282.5 14.0 7e-84 281.6 9.7 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3387) ResIII PF04851.10 gi|385804312|ref|YP_005840712.1| - 3.1e-16 59.7 0.0 3.1e-16 59.7 0.0 2.5 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit Biotin_carb_C PF02785.14 gi|385804312|ref|YP_005840712.1| - 0.018 14.9 0.1 4.8 7.2 0.0 3.6 3 0 0 3 3 3 0 Biotin carboxylase C-terminal domain AAA_22 PF13401.1 gi|385804312|ref|YP_005840712.1| - 0.026 14.6 0.1 0.5 10.5 0.0 2.8 2 0 0 2 2 2 0 AAA domain Lipase_GDSL PF00657.17 gi|385804312|ref|YP_005840712.1| - 0.15 11.8 0.6 0.56 9.9 0.5 1.9 2 0 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase DUF4411 PF14367.1 gi|385804312|ref|YP_005840712.1| - 2.3 7.9 9.6 0.15 11.7 1.6 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4411) DUF433 PF04255.9 gi|385804314|ref|YP_005840714.1| - 6.7e-06 25.4 0.7 7.2e-05 22.1 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF433) DUF4296 PF14129.1 gi|385804314|ref|YP_005840714.1| - 0.00028 20.9 0.1 0.00035 20.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4296) Glyco_trans_1_2 PF13524.1 gi|385804314|ref|YP_005840714.1| - 0.024 14.9 0.4 0.032 14.4 0.3 1.3 1 0 0 1 1 1 0 Glycosyl transferases group 1 2-Hacid_dh_C PF02826.14 gi|385804316|ref|YP_005840716.1| - 8.8e-50 168.3 0.0 1.4e-49 167.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|385804316|ref|YP_005840716.1| - 2e-07 30.5 0.0 2.5e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.12 gi|385804316|ref|YP_005840716.1| - 0.013 15.9 0.0 0.028 14.8 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DAO PF01266.19 gi|385804317|ref|YP_005840717.1| - 3.7e-10 39.2 8.2 5e-05 22.3 0.6 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|385804317|ref|YP_005840717.1| - 8.6e-05 21.1 0.5 0.00062 18.3 0.4 2.2 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|385804317|ref|YP_005840717.1| - 0.00057 19.8 4.0 0.003 17.4 2.8 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|385804317|ref|YP_005840717.1| - 0.00072 18.7 3.6 0.0053 15.8 2.5 2.1 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|385804317|ref|YP_005840717.1| - 0.001 18.2 11.5 0.0036 16.4 7.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|385804317|ref|YP_005840717.1| - 0.0044 15.9 2.9 0.0076 15.1 1.1 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|385804317|ref|YP_005840717.1| - 0.008 15.0 5.2 0.008 15.0 3.6 2.2 3 0 0 3 3 3 1 FAD binding domain Thi4 PF01946.12 gi|385804317|ref|YP_005840717.1| - 0.0086 15.2 0.4 0.031 13.3 0.1 1.9 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.1 gi|385804317|ref|YP_005840717.1| - 0.018 15.0 0.4 0.018 15.0 0.3 2.5 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|385804317|ref|YP_005840717.1| - 0.067 12.0 4.6 1.3 7.8 0.8 2.4 2 1 1 3 3 3 0 Lycopene cyclase protein Pyr_redox PF00070.22 gi|385804317|ref|YP_005840717.1| - 0.079 13.3 1.6 8.3 6.9 0.8 2.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|385804317|ref|YP_005840717.1| - 0.11 12.2 6.8 0.38 10.5 0.3 2.9 2 1 0 2 2 2 0 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|385804317|ref|YP_005840717.1| - 0.17 10.4 6.5 0.25 9.9 0.1 2.5 2 1 0 2 2 2 0 Tryptophan halogenase FAD_binding_3 PF01494.14 gi|385804318|ref|YP_005840718.1| - 0.0027 16.8 0.0 0.11 11.5 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain Pyr_redox PF00070.22 gi|385804318|ref|YP_005840718.1| - 0.11 12.8 0.0 14 6.1 0.0 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase IncA PF04156.9 gi|385804319|ref|YP_005840719.1| - 0.4 10.2 0.0 0.4 10.2 0.0 2.3 3 0 0 3 3 3 0 IncA protein Mut7-C PF01927.11 gi|385804320|ref|YP_005840720.1| - 0.094 12.6 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Mut7-C RNAse domain DUF433 PF04255.9 gi|385804321|ref|YP_005840721.1| - 1e-17 63.2 0.1 1.6e-17 62.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF433) HTH_28 PF13518.1 gi|385804323|ref|YP_005840723.1| - 0.025 14.6 0.0 0.85 9.6 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|385804323|ref|YP_005840723.1| - 0.069 12.9 0.1 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PIN PF01850.16 gi|385804324|ref|YP_005840724.1| - 6.2e-12 45.9 0.1 7.6e-12 45.6 0.1 1.0 1 0 0 1 1 1 1 PIN domain DUF3072 PF11272.3 gi|385804324|ref|YP_005840724.1| - 0.068 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3072) Antitoxin-MazE PF04014.13 gi|385804325|ref|YP_005840725.1| - 0.0025 17.5 0.0 0.0033 17.0 0.0 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE SusE PF14292.1 gi|385804326|ref|YP_005840726.1| - 0.42 10.4 3.9 0.3 10.9 0.7 2.0 1 1 0 2 2 2 0 SusE outer membrane protein TrmB PF01978.14 gi|385804328|ref|YP_005840728.1| - 0.0042 16.7 0.1 0.0065 16.1 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|385804328|ref|YP_005840728.1| - 0.012 15.9 0.0 0.026 14.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain Gam PF06064.6 gi|385804328|ref|YP_005840728.1| - 0.071 13.2 0.0 0.27 11.3 0.0 1.9 1 1 1 2 2 2 0 Host-nuclease inhibitor protein Gam 4HB_MCP_1 PF12729.2 gi|385804328|ref|YP_005840728.1| - 0.094 12.0 0.3 0.16 11.2 0.2 1.3 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction Cdc6_C PF09079.6 gi|385804328|ref|YP_005840728.1| - 0.1 12.3 0.2 0.28 10.9 0.0 1.8 2 0 0 2 2 2 0 CDC6, C terminal DinB PF05163.7 gi|385804328|ref|YP_005840728.1| - 0.38 10.4 2.9 11 5.7 0.0 2.1 1 1 1 2 2 2 0 DinB family Aminotran_5 PF00266.14 gi|385804330|ref|YP_005840730.1| - 4.3e-28 98.1 0.0 5.4e-28 97.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DUF1623 PF07785.6 gi|385804330|ref|YP_005840730.1| - 0.13 12.2 1.2 1.3 8.9 0.1 3.0 4 1 0 4 4 4 0 Protein of unknown function (DUF1623) SelR PF01641.13 gi|385804331|ref|YP_005840731.1| - 9.4e-45 151.3 0.0 1.1e-44 151.0 0.0 1.1 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.9 gi|385804331|ref|YP_005840731.1| - 0.0049 16.8 0.0 0.017 15.1 0.0 1.8 1 1 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly DUF2296 PF10058.4 gi|385804331|ref|YP_005840731.1| - 0.028 14.1 0.1 1.1 9.0 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Zn_Tnp_IS1595 PF12760.2 gi|385804331|ref|YP_005840731.1| - 0.12 12.1 1.2 13 5.6 0.0 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|385804331|ref|YP_005840731.1| - 0.77 9.1 5.5 22 4.4 0.2 3.5 3 0 0 3 3 3 0 TFIIB zinc-binding Ribosomal_L11 PF00298.14 gi|385804332|ref|YP_005840732.1| - 1.7e-19 69.7 0.0 2.3e-19 69.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.9 gi|385804332|ref|YP_005840732.1| - 2.2e-18 65.4 0.1 3.4e-18 64.8 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Peptidase_M42 PF05343.9 gi|385804333|ref|YP_005840733.1| - 2.1e-76 256.4 1.8 2.4e-76 256.2 1.2 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|385804333|ref|YP_005840733.1| - 7.2e-12 45.2 0.1 1.2e-11 44.5 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.10 gi|385804333|ref|YP_005840733.1| - 3.5e-09 35.6 0.0 0.00064 18.3 0.1 3.0 3 0 0 3 3 3 3 Aminopeptidase I zinc metalloprotease (M18) Peptidase_M28 PF04389.12 gi|385804333|ref|YP_005840733.1| - 5.5e-05 22.9 0.2 0.00013 21.7 0.1 1.6 1 0 0 1 1 1 1 Peptidase family M28 GHMP_kinases_N PF00288.21 gi|385804335|ref|YP_005840735.1| - 1.3e-15 57.1 0.1 2.8e-15 56.1 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|385804335|ref|YP_005840735.1| - 4.5e-13 49.2 0.3 4.2e-12 46.0 0.0 2.4 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|385804335|ref|YP_005840735.1| - 0.00013 21.2 0.0 0.00026 20.1 0.0 1.6 1 0 0 1 1 1 1 Galactokinase galactose-binding signature AA_kinase PF00696.23 gi|385804336|ref|YP_005840736.1| - 3.1e-34 118.5 1.4 3.8e-34 118.3 1.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family Lactamase_B_2 PF12706.2 gi|385804337|ref|YP_005840737.1| - 1.6e-21 76.7 0.1 2e-21 76.4 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|385804337|ref|YP_005840737.1| - 5e-11 42.6 2.2 3.2e-10 39.9 1.2 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|385804337|ref|YP_005840737.1| - 0.05 13.3 0.1 0.083 12.5 0.1 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain DEAD_assoc PF08494.6 gi|385804338|ref|YP_005840738.1| - 4.9e-51 173.1 0.6 9.6e-51 172.1 0.4 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|385804338|ref|YP_005840738.1| - 9.1e-29 100.1 0.0 6.5e-14 51.7 0.0 3.3 2 1 0 3 3 3 2 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|385804338|ref|YP_005840738.1| - 9.8e-16 57.3 0.1 2.1e-14 53.1 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|385804338|ref|YP_005840738.1| - 1.8e-09 37.6 0.0 5.4e-09 36.1 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|385804338|ref|YP_005840738.1| - 0.002 18.2 1.1 0.04 14.0 0.1 3.3 2 2 1 3 3 3 1 AAA domain LcrG PF07216.7 gi|385804338|ref|YP_005840738.1| - 0.061 13.3 0.0 0.21 11.6 0.0 1.9 1 0 0 1 1 1 0 LcrG protein AAA_11 PF13086.1 gi|385804339|ref|YP_005840739.1| - 4.8e-43 147.4 1.9 4.3e-22 78.8 0.7 2.8 2 1 1 3 3 3 2 AAA domain AAA_12 PF13087.1 gi|385804339|ref|YP_005840739.1| - 1.8e-41 141.7 0.0 2.9e-41 141.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain Dna2 PF08696.6 gi|385804339|ref|YP_005840739.1| - 2.9e-36 124.7 0.0 8.9e-36 123.1 0.0 1.7 1 1 0 1 1 1 1 DNA replication factor Dna2 AAA_30 PF13604.1 gi|385804339|ref|YP_005840739.1| - 1.7e-18 66.8 6.9 6.1e-18 65.1 0.4 4.1 4 2 0 4 4 4 1 AAA domain AAA_19 PF13245.1 gi|385804339|ref|YP_005840739.1| - 7.7e-14 51.2 1.7 3.8e-11 42.5 0.3 2.8 2 0 0 2 2 2 1 Part of AAA domain PDDEXK_1 PF12705.2 gi|385804339|ref|YP_005840739.1| - 1.9e-11 43.8 0.0 4.4e-11 42.6 0.0 1.6 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Viral_helicase1 PF01443.13 gi|385804339|ref|YP_005840739.1| - 1.5e-10 41.0 1.1 0.0002 20.9 0.1 3.3 2 1 1 3 3 3 3 Viral (Superfamily 1) RNA helicase DUF2075 PF09848.4 gi|385804339|ref|YP_005840739.1| - 6.8e-06 25.2 0.1 0.00013 21.1 0.0 2.5 3 0 0 3 3 3 1 Uncharacterized conserved protein (DUF2075) UvrD-helicase PF00580.16 gi|385804339|ref|YP_005840739.1| - 2.4e-05 23.7 0.0 3.8e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain Cas_Cas4 PF01930.12 gi|385804339|ref|YP_005840739.1| - 3.9e-05 23.6 0.0 0.00064 19.6 0.0 2.4 1 1 0 1 1 1 1 Domain of unknown function DUF83 AAA_22 PF13401.1 gi|385804339|ref|YP_005840739.1| - 0.00011 22.2 0.1 0.0068 16.5 0.0 3.2 2 1 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.1 gi|385804339|ref|YP_005840739.1| - 0.00016 21.7 0.0 0.0005 20.1 0.0 1.9 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain CbiA PF01656.18 gi|385804339|ref|YP_005840739.1| - 0.0011 18.4 1.4 0.0032 16.8 0.9 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain PIF1 PF05970.9 gi|385804339|ref|YP_005840739.1| - 0.0015 17.5 0.0 0.17 10.7 0.0 2.2 2 0 0 2 2 2 1 PIF1-like helicase ResIII PF04851.10 gi|385804339|ref|YP_005840739.1| - 0.0021 17.9 0.0 0.0045 16.8 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.1 gi|385804339|ref|YP_005840739.1| - 0.0024 17.2 0.0 0.0063 15.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain PhoH PF02562.11 gi|385804339|ref|YP_005840739.1| - 0.0049 16.1 0.0 0.025 13.7 0.0 2.0 2 0 0 2 2 2 1 PhoH-like protein AAA_10 PF12846.2 gi|385804339|ref|YP_005840739.1| - 0.0072 15.7 0.1 2.1 7.6 0.0 2.6 1 1 0 2 2 2 1 AAA-like domain T2SE PF00437.15 gi|385804339|ref|YP_005840739.1| - 0.008 15.1 0.0 0.017 14.0 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.1 gi|385804339|ref|YP_005840739.1| - 0.01 15.8 0.4 0.01 15.8 0.3 2.4 2 1 1 3 3 2 0 AAA ATPase domain TrwB_AAD_bind PF10412.4 gi|385804339|ref|YP_005840739.1| - 0.01 14.4 0.0 0.017 13.7 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Helicase_RecD PF05127.9 gi|385804339|ref|YP_005840739.1| - 0.012 15.1 0.2 0.064 12.8 0.1 2.3 2 1 0 2 2 1 0 Helicase AAA PF00004.24 gi|385804339|ref|YP_005840739.1| - 0.013 15.7 0.0 0.037 14.2 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|385804339|ref|YP_005840739.1| - 0.019 14.0 0.0 0.036 13.1 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|385804339|ref|YP_005840739.1| - 0.023 14.4 0.0 0.11 12.2 0.0 2.1 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|385804339|ref|YP_005840739.1| - 0.027 14.0 0.3 0.13 11.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|385804339|ref|YP_005840739.1| - 0.038 13.1 0.0 0.066 12.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SRP54 PF00448.17 gi|385804339|ref|YP_005840739.1| - 0.049 13.0 0.0 0.13 11.6 0.0 1.7 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DDE_5 PF13546.1 gi|385804340|ref|YP_005840740.1| - 5.5e-20 71.3 0.0 8.7e-20 70.6 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.16 gi|385804340|ref|YP_005840740.1| - 2.8e-17 62.9 0.4 5.2e-17 62.0 0.1 1.6 2 1 0 2 2 2 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|385804340|ref|YP_005840740.1| - 0.00011 21.3 0.5 0.00045 19.3 0.3 1.8 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_6 PF13751.1 gi|385804340|ref|YP_005840740.1| - 0.01 15.8 0.0 0.035 14.1 0.0 1.9 2 0 0 2 2 2 0 Transposase DDE domain Peptidase_M50B PF13398.1 gi|385804342|ref|YP_005840742.1| - 0.084 12.2 3.4 0.091 12.1 2.4 1.0 1 0 0 1 1 1 0 Peptidase M50B-like ABC_tran PF00005.22 gi|385804343|ref|YP_005840743.1| - 2e-32 112.3 0.0 4.1e-32 111.3 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_17 PF13207.1 gi|385804343|ref|YP_005840743.1| - 8e-07 29.9 0.2 4.4e-06 27.5 0.1 2.4 2 1 0 2 2 1 1 AAA domain ABC_membrane PF00664.18 gi|385804343|ref|YP_005840743.1| - 9.5e-07 28.4 8.3 1.4e-06 27.9 5.8 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.14 gi|385804343|ref|YP_005840743.1| - 2.2e-06 27.0 2.5 1.1e-05 24.8 0.2 2.0 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|385804343|ref|YP_005840743.1| - 0.0001 21.5 0.0 0.00019 20.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|385804343|ref|YP_005840743.1| - 0.00048 20.2 0.3 0.0039 17.3 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|385804343|ref|YP_005840743.1| - 0.00093 18.6 0.0 0.0018 17.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|385804343|ref|YP_005840743.1| - 0.002 18.1 0.1 0.59 10.0 0.0 2.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|385804343|ref|YP_005840743.1| - 0.0026 18.0 0.0 0.011 16.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|385804343|ref|YP_005840743.1| - 0.0039 16.6 0.0 0.011 15.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|385804343|ref|YP_005840743.1| - 0.0065 16.4 0.1 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain RNA_helicase PF00910.17 gi|385804343|ref|YP_005840743.1| - 0.0092 16.1 0.0 0.042 14.0 0.0 2.2 2 0 0 2 2 1 1 RNA helicase AAA_5 PF07728.9 gi|385804343|ref|YP_005840743.1| - 0.019 14.6 0.0 0.063 13.0 0.0 2.0 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) ABC_ATPase PF09818.4 gi|385804343|ref|YP_005840743.1| - 0.021 13.4 0.1 0.036 12.6 0.1 1.3 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_30 PF13604.1 gi|385804343|ref|YP_005840743.1| - 0.024 14.2 0.3 0.18 11.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|385804343|ref|YP_005840743.1| - 0.036 13.9 0.0 0.17 11.7 0.0 2.3 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|385804343|ref|YP_005840743.1| - 0.062 13.0 0.1 2.2 8.0 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function DUF87 Zeta_toxin PF06414.7 gi|385804343|ref|YP_005840743.1| - 0.07 12.2 0.1 0.29 10.2 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin AAA_23 PF13476.1 gi|385804343|ref|YP_005840743.1| - 0.079 13.2 1.2 0.13 12.5 0.2 1.9 2 1 0 2 2 2 0 AAA domain DBI_PRT PF02277.12 gi|385804343|ref|YP_005840743.1| - 0.083 11.9 0.5 0.13 11.3 0.0 1.5 2 0 0 2 2 2 0 Phosphoribosyltransferase APS_kinase PF01583.15 gi|385804343|ref|YP_005840743.1| - 0.1 12.2 0.3 0.32 10.6 0.0 2.0 3 0 0 3 3 2 0 Adenylylsulphate kinase DUF2342 PF10103.4 gi|385804344|ref|YP_005840744.1| - 1e-90 304.1 1.9 1.2e-52 178.9 0.2 2.0 1 1 1 2 2 2 2 Uncharacterised conserved protein (DUF2342) Peptidase_MA_2 PF13485.1 gi|385804344|ref|YP_005840744.1| - 0.41 10.6 5.3 0.16 12.0 0.9 2.3 2 1 0 2 2 2 0 Peptidase MA superfamily Ribosomal_S2 PF00318.15 gi|385804345|ref|YP_005840745.1| - 7.2e-37 126.6 0.0 2.7e-18 65.9 0.1 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Enolase_C PF00113.17 gi|385804346|ref|YP_005840746.1| - 1.2e-73 247.6 0.3 1.8e-73 247.1 0.2 1.2 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|385804346|ref|YP_005840746.1| - 1.3e-38 131.8 1.0 4e-38 130.3 0.5 2.0 2 0 0 2 2 2 1 Enolase, N-terminal domain MAAL_C PF07476.6 gi|385804346|ref|YP_005840746.1| - 2.2e-05 23.5 1.4 5.1e-05 22.3 0.1 2.0 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus MR_MLE_C PF13378.1 gi|385804346|ref|YP_005840746.1| - 0.0001 22.2 0.4 0.00043 20.2 0.0 2.2 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|385804346|ref|YP_005840746.1| - 0.00019 21.8 0.0 0.00059 20.3 0.0 1.9 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RNA_pol_Rpb6 PF01192.17 gi|385804347|ref|YP_005840747.1| - 8.5e-20 70.2 0.0 9.1e-20 70.1 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.12 gi|385804348|ref|YP_005840748.1| - 2.2e-29 101.2 0.4 2.4e-29 101.1 0.3 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit DUF2655 PF10848.3 gi|385804348|ref|YP_005840748.1| - 0.11 12.3 0.1 0.14 12.0 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2655) Ribosomal_S9 PF00380.14 gi|385804349|ref|YP_005840749.1| - 4.1e-36 123.8 0.1 4.6e-36 123.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.13 gi|385804350|ref|YP_005840750.1| - 5.9e-19 68.3 0.0 7.7e-19 68.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18e PF00828.14 gi|385804351|ref|YP_005840751.1| - 3.3e-13 50.1 0.1 4.3e-13 49.7 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 RNA_pol_A_bac PF01000.21 gi|385804352|ref|YP_005840752.1| - 1.6e-18 66.8 0.0 9.8e-18 64.3 0.0 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|385804352|ref|YP_005840752.1| - 4.2e-11 41.8 0.0 5.8e-11 41.3 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_S11 PF00411.14 gi|385804353|ref|YP_005840753.1| - 7.1e-44 148.4 0.3 8.2e-44 148.2 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.20 gi|385804354|ref|YP_005840754.1| - 4.9e-16 57.8 0.5 1.3e-14 53.3 0.0 2.3 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.14 gi|385804354|ref|YP_005840754.1| - 0.00067 19.9 0.8 0.01 16.2 0.6 2.2 1 1 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain S4_2 PF13275.1 gi|385804354|ref|YP_005840754.1| - 0.038 13.6 0.0 0.064 12.8 0.0 1.4 1 0 0 1 1 1 0 S4 domain ATP-synt_D PF01813.12 gi|385804354|ref|YP_005840754.1| - 0.048 13.2 0.0 0.067 12.7 0.0 1.1 1 0 0 1 1 1 0 ATP synthase subunit D Ribosomal_S13 PF00416.17 gi|385804355|ref|YP_005840755.1| - 4.9e-34 116.9 1.8 6.2e-34 116.6 1.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH_5 PF14520.1 gi|385804355|ref|YP_005840755.1| - 0.34 11.1 2.0 0.28 11.3 0.3 2.0 1 1 1 2 2 1 0 Helix-hairpin-helix domain STT3 PF02516.9 gi|385804356|ref|YP_005840756.1| - 3.7e-10 39.3 21.2 3.7e-10 39.3 14.7 2.1 2 1 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit GATase PF00117.23 gi|385804357|ref|YP_005840757.1| - 7.1e-21 74.5 0.0 9.8e-21 74.0 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|385804357|ref|YP_005840757.1| - 0.00014 21.4 0.0 0.025 14.0 0.0 2.3 2 0 0 2 2 2 2 Peptidase C26 HTS PF04204.11 gi|385804357|ref|YP_005840757.1| - 0.00092 18.0 0.0 0.0049 15.6 0.0 1.8 1 1 0 1 1 1 1 Homoserine O-succinyltransferase GATase_3 PF07685.9 gi|385804357|ref|YP_005840757.1| - 0.0019 17.8 0.0 0.0046 16.5 0.0 1.8 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DDE_5 PF13546.1 gi|385804358|ref|YP_005840758.1| - 5.5e-20 71.3 0.0 8.7e-20 70.6 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.16 gi|385804358|ref|YP_005840758.1| - 2.8e-17 62.9 0.4 5.2e-17 62.0 0.1 1.6 2 1 0 2 2 2 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|385804358|ref|YP_005840758.1| - 0.00011 21.3 0.5 0.00045 19.3 0.3 1.8 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_6 PF13751.1 gi|385804358|ref|YP_005840758.1| - 0.01 15.8 0.0 0.035 14.1 0.0 1.9 2 0 0 2 2 2 0 Transposase DDE domain Mob_synth_C PF06463.8 gi|385804359|ref|YP_005840759.1| - 9.3e-34 115.8 0.0 1.4e-33 115.2 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.16 gi|385804359|ref|YP_005840759.1| - 5.5e-25 88.4 0.1 2.2e-24 86.4 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|385804359|ref|YP_005840759.1| - 4.3e-08 33.2 0.0 1e-07 31.9 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|385804359|ref|YP_005840759.1| - 9.7e-08 32.2 0.0 2.7e-07 30.7 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Imm49 PF15660.1 gi|385804359|ref|YP_005840759.1| - 0.0079 16.2 0.0 0.019 14.9 0.0 1.6 1 0 0 1 1 1 1 Immunity protein 49 Cytochrome_C7 PF14522.1 gi|385804359|ref|YP_005840759.1| - 0.061 12.9 0.4 10 5.8 0.0 2.3 2 0 0 2 2 2 0 Cytochrome c7 ParA PF10609.4 gi|385804360|ref|YP_005840760.1| - 4.2e-34 116.2 0.2 8.2e-34 115.3 0.0 1.6 2 0 0 2 2 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|385804360|ref|YP_005840760.1| - 1.7e-19 70.0 0.0 2.6e-19 69.4 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF59 PF01883.14 gi|385804360|ref|YP_005840760.1| - 2e-10 40.4 0.3 5.7e-10 39.0 0.2 1.8 1 0 0 1 1 1 1 Domain of unknown function DUF59 AAA_31 PF13614.1 gi|385804360|ref|YP_005840760.1| - 2.4e-08 34.0 0.0 3.3e-06 27.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|385804360|ref|YP_005840760.1| - 5.1e-08 32.3 0.0 8.9e-08 31.5 0.0 1.4 1 0 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|385804360|ref|YP_005840760.1| - 4.4e-05 22.6 1.9 0.00033 19.8 0.2 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.6 gi|385804360|ref|YP_005840760.1| - 0.00025 20.1 0.0 0.00043 19.4 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein AAA_26 PF13500.1 gi|385804360|ref|YP_005840760.1| - 0.0067 16.0 0.1 1 8.9 0.0 2.5 3 0 0 3 3 3 1 AAA domain Fer4_NifH PF00142.13 gi|385804360|ref|YP_005840760.1| - 0.019 14.1 0.1 0.036 13.2 0.1 1.4 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|385804360|ref|YP_005840760.1| - 0.032 13.6 0.3 0.051 12.9 0.2 1.5 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|385804360|ref|YP_005840760.1| - 0.12 11.5 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Polysacc_synt_2 PF02719.10 gi|385804361|ref|YP_005840761.1| - 3.9e-93 311.5 0.1 4.5e-93 311.3 0.1 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.16 gi|385804361|ref|YP_005840761.1| - 5.4e-28 98.0 0.1 1.1e-26 93.7 0.0 2.4 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|385804361|ref|YP_005840761.1| - 1.6e-26 92.6 0.1 7.4e-25 87.1 0.0 2.1 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|385804361|ref|YP_005840761.1| - 4e-14 52.1 0.0 6.6e-13 48.1 0.0 2.1 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|385804361|ref|YP_005840761.1| - 2.8e-13 50.2 1.2 3.2e-12 46.8 0.8 2.3 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|385804361|ref|YP_005840761.1| - 4.4e-12 46.2 0.1 8e-12 45.3 0.1 1.4 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_4 PF07993.7 gi|385804361|ref|YP_005840761.1| - 1.6e-11 43.5 0.4 6.3e-09 35.1 0.3 2.9 1 1 1 2 2 2 2 Male sterility protein NmrA PF05368.8 gi|385804361|ref|YP_005840761.1| - 2.5e-09 36.7 0.1 4.6e-09 35.8 0.0 1.5 1 1 0 1 1 1 1 NmrA-like family Saccharop_dh PF03435.13 gi|385804361|ref|YP_005840761.1| - 6.9e-06 25.2 0.1 1e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase KR PF08659.5 gi|385804361|ref|YP_005840761.1| - 2.8e-05 23.8 0.1 7.2e-05 22.5 0.1 1.7 1 1 0 1 1 1 1 KR domain Shikimate_DH PF01488.15 gi|385804361|ref|YP_005840761.1| - 0.011 15.8 0.5 0.028 14.5 0.1 1.9 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.13 gi|385804361|ref|YP_005840761.1| - 0.013 15.4 0.0 0.041 13.8 0.0 1.9 1 0 0 1 1 1 0 TrkA-N domain Epimerase PF01370.16 gi|385804362|ref|YP_005840762.1| - 4.3e-52 176.9 0.0 5.4e-52 176.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|385804362|ref|YP_005840762.1| - 2.5e-19 69.1 0.0 1.7e-17 63.1 0.0 2.1 1 1 0 1 1 1 1 Male sterility protein 3Beta_HSD PF01073.14 gi|385804362|ref|YP_005840762.1| - 3.4e-19 68.6 0.0 5e-19 68.0 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|385804362|ref|YP_005840762.1| - 2e-15 56.4 0.0 2.6e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|385804362|ref|YP_005840762.1| - 4.4e-14 52.0 0.0 4.6e-13 48.7 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|385804362|ref|YP_005840762.1| - 4.7e-12 46.2 0.0 7.1e-12 45.6 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|385804362|ref|YP_005840762.1| - 9.4e-07 28.3 0.0 0.012 14.8 0.0 2.1 2 0 0 2 2 2 2 NmrA-like family adh_short PF00106.20 gi|385804362|ref|YP_005840762.1| - 5.6e-06 26.3 0.4 9.5e-06 25.6 0.3 1.5 1 1 0 1 1 1 1 short chain dehydrogenase Saccharop_dh PF03435.13 gi|385804362|ref|YP_005840762.1| - 0.0023 17.0 0.1 0.0037 16.3 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase DapB_N PF01113.15 gi|385804362|ref|YP_005840762.1| - 0.0075 16.1 0.4 0.019 14.9 0.1 1.8 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Epimerase_Csub PF13950.1 gi|385804362|ref|YP_005840762.1| - 0.091 12.7 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit KR PF08659.5 gi|385804362|ref|YP_005840762.1| - 0.091 12.4 0.1 0.17 11.4 0.1 1.5 1 1 0 1 1 1 0 KR domain DegT_DnrJ_EryC1 PF01041.12 gi|385804363|ref|YP_005840763.1| - 6e-115 384.1 0.0 6.9e-115 383.9 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|385804363|ref|YP_005840763.1| - 5.6e-10 38.7 0.0 1.2e-09 37.5 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|385804363|ref|YP_005840763.1| - 1.8e-09 36.8 0.0 2.2e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|385804363|ref|YP_005840763.1| - 1.1e-08 34.6 0.1 6.9e-08 31.9 0.1 1.9 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|385804363|ref|YP_005840763.1| - 2.7e-05 22.6 0.0 4.2e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.15 gi|385804363|ref|YP_005840763.1| - 0.015 13.8 0.1 0.029 12.9 0.1 1.5 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain NeuB PF03102.9 gi|385804364|ref|YP_005840764.1| - 1.3e-83 279.8 0.0 1.6e-83 279.5 0.0 1.1 1 0 0 1 1 1 1 NeuB family SAF PF08666.7 gi|385804364|ref|YP_005840764.1| - 6.9e-06 26.3 0.0 2.6e-05 24.5 0.0 2.1 2 0 0 2 2 2 1 SAF domain PEP-utilizers_C PF02896.13 gi|385804365|ref|YP_005840765.1| - 3.2e-49 167.4 0.0 4.6e-49 166.8 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|385804365|ref|YP_005840765.1| - 4e-06 26.2 0.0 7.1e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Phage_Gp15 PF06854.6 gi|385804365|ref|YP_005840765.1| - 0.056 12.9 0.8 0.26 10.7 0.3 2.1 2 0 0 2 2 2 0 Bacteriophage Gp15 protein DUF3150 PF11348.3 gi|385804365|ref|YP_005840765.1| - 0.062 12.3 0.4 0.15 11.1 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3150) ATPgrasp_Ter PF15632.1 gi|385804366|ref|YP_005840766.1| - 1.9e-40 138.6 0.0 3.1e-40 137.9 0.0 1.3 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|385804366|ref|YP_005840766.1| - 5e-29 101.3 0.0 8.4e-29 100.6 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|385804366|ref|YP_005840766.1| - 2.3e-17 63.3 0.0 3.6e-17 62.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|385804366|ref|YP_005840766.1| - 1.4e-07 31.0 0.0 0.00093 18.6 0.0 2.5 1 1 1 2 2 2 2 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.12 gi|385804366|ref|YP_005840766.1| - 2.3e-07 30.3 0.0 6.9e-06 25.4 0.0 2.3 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.1 gi|385804366|ref|YP_005840766.1| - 3.1e-05 23.2 0.2 0.00061 18.9 0.0 2.6 2 1 0 2 2 2 1 Sugar-transfer associated ATP-grasp RimK PF08443.6 gi|385804366|ref|YP_005840766.1| - 5.7e-05 22.6 0.0 0.0001 21.8 0.0 1.5 1 0 0 1 1 1 1 RimK-like ATP-grasp domain TTL PF03133.10 gi|385804366|ref|YP_005840766.1| - 0.00022 20.2 0.0 0.0051 15.7 0.0 2.1 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family GSH-S_ATP PF02955.11 gi|385804366|ref|YP_005840766.1| - 0.0045 16.1 0.0 0.0088 15.2 0.0 1.5 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_TupA PF14305.1 gi|385804366|ref|YP_005840766.1| - 0.038 13.2 0.0 0.055 12.7 0.0 1.2 1 0 0 1 1 1 0 TupA-like ATPgrasp CPSase_L_chain PF00289.17 gi|385804366|ref|YP_005840766.1| - 0.058 13.4 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Metallophos_2 PF12850.2 gi|385804367|ref|YP_005840767.1| - 2.1e-37 128.3 0.0 2.6e-37 128.0 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|385804367|ref|YP_005840767.1| - 1.1e-10 41.2 3.3 2.7e-10 39.9 2.3 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Glyco_trans_1_3 PF13528.1 gi|385804368|ref|YP_005840768.1| - 4.1e-09 36.0 0.1 1.5e-05 24.3 0.0 2.9 2 1 1 3 3 3 2 Glycosyl transferase family 1 Glyco_trans_1_2 PF13524.1 gi|385804368|ref|YP_005840768.1| - 0.001 19.2 0.7 0.0035 17.5 0.0 2.2 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|385804368|ref|YP_005840768.1| - 0.023 14.8 0.0 0.06 13.4 0.0 1.7 2 0 0 2 2 2 0 Glycosyl transferases group 1 CTP_transf_3 PF02348.14 gi|385804369|ref|YP_005840769.1| - 2.2e-18 66.7 0.3 2.6e-18 66.4 0.2 1.1 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.2 gi|385804369|ref|YP_005840769.1| - 1.5e-05 25.1 0.0 1.8e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF2064 PF09837.4 gi|385804369|ref|YP_005840769.1| - 5.2e-05 22.8 0.2 0.0001 21.9 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) DUF1351 PF07083.6 gi|385804369|ref|YP_005840769.1| - 0.047 13.3 0.3 0.087 12.4 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1351) CofC PF01983.11 gi|385804369|ref|YP_005840769.1| - 0.052 12.4 1.0 0.087 11.7 0.4 1.7 2 1 0 2 2 2 0 Guanylyl transferase CofC like SWIM PF04434.12 gi|385804371|ref|YP_005840771.1| - 4.7e-07 29.1 1.6 8.5e-07 28.3 1.1 1.4 1 0 0 1 1 1 1 SWIM zinc finger TPR_12 PF13424.1 gi|385804371|ref|YP_005840771.1| - 0.67 9.9 9.7 5.1 7.1 0.2 5.0 5 1 1 6 6 6 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|385804371|ref|YP_005840771.1| - 0.91 10.1 5.1 2.5e+02 2.4 0.0 5.4 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|385804371|ref|YP_005840771.1| - 5.1 8.0 20.5 12 6.9 0.0 6.8 6 1 1 7 7 7 0 Tetratricopeptide repeat Cdc6_C PF09079.6 gi|385804372|ref|YP_005840772.1| - 4e-13 48.9 0.0 9.2e-13 47.7 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA PF00004.24 gi|385804372|ref|YP_005840772.1| - 2e-10 40.9 0.0 5.6e-10 39.5 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|385804372|ref|YP_005840772.1| - 1.3e-08 35.0 0.3 8.7e-08 32.3 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|385804372|ref|YP_005840772.1| - 7.8e-06 26.0 0.0 1.7e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|385804372|ref|YP_005840772.1| - 0.00066 19.3 0.0 0.0023 17.6 0.0 1.8 1 1 0 1 1 1 1 NACHT domain DUF815 PF05673.8 gi|385804372|ref|YP_005840772.1| - 0.0053 15.7 0.0 0.0084 15.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Bac_DnaA PF00308.13 gi|385804372|ref|YP_005840772.1| - 0.0086 15.7 0.0 0.26 10.9 0.0 2.2 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_19 PF13245.1 gi|385804372|ref|YP_005840772.1| - 0.073 12.8 0.0 0.2 11.4 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain Abhydrolase_9 PF10081.4 gi|385804372|ref|YP_005840772.1| - 0.085 11.5 0.0 0.13 10.9 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta-hydrolase family Mg_chelatase PF01078.16 gi|385804372|ref|YP_005840772.1| - 0.085 12.0 0.0 0.21 10.7 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI HTH_20 PF12840.2 gi|385804373|ref|YP_005840773.1| - 0.00018 21.2 0.0 0.00037 20.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|385804373|ref|YP_005840773.1| - 0.01 15.4 0.0 0.23 11.1 0.0 2.5 3 0 0 3 3 3 0 MarR family TrmB PF01978.14 gi|385804373|ref|YP_005840773.1| - 0.083 12.6 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|385804373|ref|YP_005840773.1| - 0.088 12.4 0.0 0.18 11.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Cdc6_C PF09079.6 gi|385804376|ref|YP_005840776.1| - 8.1e-15 54.3 0.0 1.8e-14 53.1 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|385804376|ref|YP_005840776.1| - 6.7e-11 42.5 0.0 3.9e-10 40.0 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|385804376|ref|YP_005840776.1| - 9.1e-11 42.0 0.0 2.4e-10 40.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|385804376|ref|YP_005840776.1| - 6.1e-06 26.4 0.2 4.3e-05 23.7 0.1 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|385804376|ref|YP_005840776.1| - 0.00016 20.7 0.0 0.00027 19.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|385804376|ref|YP_005840776.1| - 0.00045 19.7 0.0 0.00092 18.7 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_5 PF07728.9 gi|385804376|ref|YP_005840776.1| - 0.0012 18.5 0.1 0.018 14.7 0.1 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|385804376|ref|YP_005840776.1| - 0.003 17.7 0.0 0.017 15.2 0.0 2.3 2 0 0 2 2 2 1 RNA helicase ResIII PF04851.10 gi|385804376|ref|YP_005840776.1| - 0.0035 17.1 0.0 0.012 15.5 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit RuvB_N PF05496.7 gi|385804376|ref|YP_005840776.1| - 0.0045 16.0 0.1 0.14 11.1 0.0 2.8 3 0 0 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus DUF2075 PF09848.4 gi|385804376|ref|YP_005840776.1| - 0.0056 15.6 0.0 0.011 14.7 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.17 gi|385804376|ref|YP_005840776.1| - 0.0074 15.1 0.0 0.016 14.1 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain Sigma54_activ_2 PF14532.1 gi|385804376|ref|YP_005840776.1| - 0.01 15.8 0.0 0.021 14.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_2 PF07724.9 gi|385804376|ref|YP_005840776.1| - 0.018 14.9 0.0 0.051 13.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|385804376|ref|YP_005840776.1| - 0.024 15.4 0.2 0.11 13.3 0.0 2.4 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|385804376|ref|YP_005840776.1| - 0.035 13.7 0.0 0.068 12.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.7 gi|385804376|ref|YP_005840776.1| - 0.056 12.5 0.0 0.095 11.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Terminase_2 PF03592.11 gi|385804376|ref|YP_005840776.1| - 0.059 13.6 0.1 0.19 12.0 0.1 2.0 1 1 0 1 1 1 0 Terminase small subunit Myosin_head PF00063.16 gi|385804376|ref|YP_005840776.1| - 0.071 11.1 0.0 0.11 10.4 0.0 1.2 1 0 0 1 1 1 0 Myosin head (motor domain) Mg_chelatase_2 PF13335.1 gi|385804376|ref|YP_005840776.1| - 0.075 13.4 0.3 0.23 11.8 0.1 1.9 2 0 0 2 2 1 0 Magnesium chelatase, subunit ChlI AAA_32 PF13654.1 gi|385804376|ref|YP_005840776.1| - 0.084 11.5 0.5 8 4.9 0.2 2.1 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|385804376|ref|YP_005840776.1| - 0.092 12.6 0.0 0.3 10.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain DEAD PF00270.24 gi|385804376|ref|YP_005840776.1| - 0.12 11.8 0.4 0.98 8.8 0.0 2.2 1 1 0 2 2 2 0 DEAD/DEAH box helicase Mg_chelatase PF01078.16 gi|385804376|ref|YP_005840776.1| - 0.13 11.3 0.0 1 8.4 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Acetyltransf_1 PF00583.19 gi|385804378|ref|YP_005840778.1| - 5.4e-15 55.1 0.0 8.6e-15 54.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|385804378|ref|YP_005840778.1| - 9.2e-12 45.1 0.1 1.1e-11 44.8 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|385804378|ref|YP_005840778.1| - 2.2e-09 37.3 0.1 4.1e-09 36.4 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|385804378|ref|YP_005840778.1| - 9.6e-08 32.1 0.1 1.3e-07 31.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|385804378|ref|YP_005840778.1| - 5.6e-07 29.2 0.2 2e-06 27.4 0.0 1.8 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_CG PF14542.1 gi|385804378|ref|YP_005840778.1| - 3.2e-05 23.7 0.0 8.1e-05 22.4 0.0 1.8 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.1 gi|385804378|ref|YP_005840778.1| - 0.0011 18.8 0.1 0.0014 18.5 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|385804378|ref|YP_005840778.1| - 0.0057 16.5 0.0 0.019 14.7 0.0 1.7 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|385804378|ref|YP_005840778.1| - 0.016 14.8 0.0 0.03 13.9 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF488 PF04343.8 gi|385804378|ref|YP_005840778.1| - 0.047 14.0 1.0 1.9 8.9 0.0 2.4 2 1 1 3 3 3 0 Protein of unknown function, DUF488 BPD_transp_2 PF02653.11 gi|385804379|ref|YP_005840779.1| - 1.9e-33 115.5 43.3 1.9e-33 115.5 30.0 1.6 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|385804380|ref|YP_005840780.1| - 1.6e-41 142.0 29.7 1.6e-41 142.0 20.6 1.6 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component E1-E2_ATPase PF00122.15 gi|385804380|ref|YP_005840780.1| - 9.9 5.1 6.5 0.61 9.0 0.0 2.2 2 1 0 2 2 2 0 E1-E2 ATPase ABC_tran PF00005.22 gi|385804381|ref|YP_005840781.1| - 1.5e-31 109.5 0.0 2e-31 109.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385804381|ref|YP_005840781.1| - 3e-13 50.3 4.4 1.6e-10 41.4 3.0 2.1 1 1 0 1 1 1 1 AAA domain BCA_ABC_TP_C PF12399.3 gi|385804381|ref|YP_005840781.1| - 2.1e-10 40.0 0.2 4.9e-10 38.8 0.1 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_29 PF13555.1 gi|385804381|ref|YP_005840781.1| - 2.4e-06 26.9 0.3 4.5e-06 26.0 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|385804381|ref|YP_005840781.1| - 8.6e-06 26.2 0.0 1.1e-05 25.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|385804381|ref|YP_005840781.1| - 0.00034 19.9 0.1 0.019 14.2 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain MukB PF04310.7 gi|385804381|ref|YP_005840781.1| - 0.0024 17.2 0.2 0.0039 16.5 0.2 1.3 1 0 0 1 1 1 1 MukB N-terminal AAA_10 PF12846.2 gi|385804381|ref|YP_005840781.1| - 0.0067 15.8 0.4 1.6 8.1 0.2 2.5 1 1 2 3 3 3 1 AAA-like domain AAA PF00004.24 gi|385804381|ref|YP_005840781.1| - 0.031 14.4 0.0 2.1 8.5 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|385804381|ref|YP_005840781.1| - 0.039 13.1 0.0 0.068 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|385804381|ref|YP_005840781.1| - 0.085 12.8 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase Zeta_toxin PF06414.7 gi|385804381|ref|YP_005840781.1| - 0.086 11.9 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.22 gi|385804382|ref|YP_005840782.1| - 1.3e-31 109.6 0.0 2e-31 109.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385804382|ref|YP_005840782.1| - 2.8e-10 40.6 0.0 0.00031 20.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|385804382|ref|YP_005840782.1| - 0.0002 20.6 1.5 0.0031 16.7 1.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain MutS_V PF00488.16 gi|385804382|ref|YP_005840782.1| - 0.00027 20.4 0.0 0.00039 19.8 0.0 1.2 1 0 0 1 1 1 1 MutS domain V AAA_29 PF13555.1 gi|385804382|ref|YP_005840782.1| - 0.001 18.5 0.2 0.002 17.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|385804382|ref|YP_005840782.1| - 0.0016 18.7 0.0 0.0022 18.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|385804382|ref|YP_005840782.1| - 0.0021 18.1 0.0 0.004 17.1 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|385804382|ref|YP_005840782.1| - 0.0092 15.4 1.5 0.044 13.2 0.5 2.0 1 1 0 2 2 2 1 AAA-like domain AAA_30 PF13604.1 gi|385804382|ref|YP_005840782.1| - 0.018 14.6 0.1 0.039 13.5 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|385804382|ref|YP_005840782.1| - 0.023 14.8 0.1 0.19 11.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|385804382|ref|YP_005840782.1| - 0.027 13.2 0.1 0.041 12.6 0.0 1.2 1 0 0 1 1 1 0 ArgK protein NB-ARC PF00931.17 gi|385804382|ref|YP_005840782.1| - 0.045 12.6 0.2 0.065 12.0 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.1 gi|385804382|ref|YP_005840782.1| - 0.062 13.1 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|385804382|ref|YP_005840782.1| - 0.069 12.8 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_15 PF13175.1 gi|385804382|ref|YP_005840782.1| - 0.076 12.0 0.0 0.27 10.2 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|385804382|ref|YP_005840782.1| - 0.095 12.0 0.0 0.19 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|385804382|ref|YP_005840782.1| - 0.16 12.7 0.7 0.27 12.0 0.2 1.7 2 1 0 2 2 1 0 AAA domain SbcCD_C PF13558.1 gi|385804382|ref|YP_005840782.1| - 8.6 6.3 8.7 3.4 7.6 1.5 2.7 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Plasmid_stabil PF05016.9 gi|385804383|ref|YP_005840783.1| - 5.4e-09 36.3 2.5 6.1e-09 36.1 1.7 1.0 1 0 0 1 1 1 1 Plasmid stabilisation system protein RHH_1 PF01402.16 gi|385804384|ref|YP_005840784.1| - 2.4e-05 24.0 0.3 6.2e-05 22.7 0.0 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DNA_gyraseB PF00204.20 gi|385804384|ref|YP_005840784.1| - 0.065 12.4 0.0 0.082 12.1 0.0 1.2 1 0 0 1 1 1 0 DNA gyrase B PSK_trans_fac PF07704.6 gi|385804384|ref|YP_005840784.1| - 0.11 13.1 1.1 0.17 12.5 0.5 1.5 1 1 0 1 1 1 0 Rv0623-like transcription factor DUF2064 PF09837.4 gi|385804386|ref|YP_005840786.1| - 4.9e-06 26.1 0.0 7.5e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) CofC PF01983.11 gi|385804386|ref|YP_005840786.1| - 0.044 12.7 0.1 2.3 7.0 0.1 2.1 1 1 0 1 1 1 0 Guanylyl transferase CofC like UDG PF03167.14 gi|385804387|ref|YP_005840787.1| - 1.1e-21 76.8 0.0 1.3e-21 76.6 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF539 PF04400.8 gi|385804387|ref|YP_005840787.1| - 0.025 14.0 0.3 0.045 13.2 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF539) NTP_transferase PF00483.18 gi|385804388|ref|YP_005840788.1| - 1.7e-27 96.3 0.0 2e-27 96.0 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|385804388|ref|YP_005840788.1| - 3e-12 46.9 0.1 4e-12 46.4 0.1 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|385804388|ref|YP_005840788.1| - 7e-07 28.9 0.3 1.5e-06 27.8 0.2 1.6 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|385804388|ref|YP_005840788.1| - 0.0098 15.5 0.1 0.014 15.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transferase PF00483.18 gi|385804389|ref|YP_005840789.1| - 5e-43 147.1 0.0 5.9e-43 146.9 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|385804389|ref|YP_005840789.1| - 2.8e-14 53.4 0.0 3.4e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|385804389|ref|YP_005840789.1| - 0.00018 21.1 0.0 0.00091 18.8 0.0 2.0 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|385804389|ref|YP_005840789.1| - 0.038 13.6 0.0 0.05 13.2 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 2 Epimerase PF01370.16 gi|385804390|ref|YP_005840790.1| - 2.4e-63 213.7 0.0 2.9e-63 213.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|385804390|ref|YP_005840790.1| - 6.8e-25 87.3 0.0 9e-25 86.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|385804390|ref|YP_005840790.1| - 3.6e-18 65.4 0.1 4.8e-18 65.0 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|385804390|ref|YP_005840790.1| - 7.2e-15 54.6 0.0 4e-14 52.1 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|385804390|ref|YP_005840790.1| - 1.6e-13 50.1 0.0 3.3e-13 49.1 0.0 1.5 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|385804390|ref|YP_005840790.1| - 8.3e-12 45.4 0.5 9.5e-11 42.0 0.3 2.1 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|385804390|ref|YP_005840790.1| - 1.1e-09 38.3 0.0 3.1e-09 36.9 0.0 1.7 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|385804390|ref|YP_005840790.1| - 0.00029 20.5 0.0 0.0017 18.0 0.0 2.1 1 1 0 1 1 1 1 KR domain NmrA PF05368.8 gi|385804390|ref|YP_005840790.1| - 0.001 18.3 0.1 0.0021 17.3 0.1 1.6 1 1 0 1 1 1 1 NmrA-like family Epimerase_Csub PF13950.1 gi|385804390|ref|YP_005840790.1| - 0.0042 16.9 0.1 0.012 15.5 0.0 1.7 2 0 0 2 2 2 1 UDP-glucose 4-epimerase C-term subunit NAD_binding_2 PF03446.10 gi|385804390|ref|YP_005840790.1| - 0.026 14.3 0.0 0.047 13.5 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|385804390|ref|YP_005840790.1| - 0.056 13.0 0.0 0.16 11.6 0.0 1.9 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|385804390|ref|YP_005840790.1| - 0.082 12.9 0.1 1.1 9.2 0.1 2.7 2 2 0 2 2 2 0 TrkA-N domain Peripla_BP_6 PF13458.1 gi|385804391|ref|YP_005840791.1| - 2.5e-27 96.1 7.4 8e-20 71.4 0.7 2.3 2 0 0 2 2 2 2 Periplasmic binding protein ANF_receptor PF01094.23 gi|385804391|ref|YP_005840791.1| - 6.1e-16 58.1 1.4 1.2e-12 47.3 0.3 2.1 2 0 0 2 2 2 2 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|385804391|ref|YP_005840791.1| - 0.00012 20.9 0.3 0.013 14.3 0.1 2.2 2 0 0 2 2 2 2 Periplasmic binding protein domain HTH_18 PF12833.2 gi|385804391|ref|YP_005840791.1| - 0.14 12.2 0.1 1.3 9.1 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain DUF433 PF04255.9 gi|385804393|ref|YP_005840793.1| - 1e-07 31.2 0.1 2e-07 30.3 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF433) DUF4296 PF14129.1 gi|385804393|ref|YP_005840793.1| - 0.015 15.4 0.0 0.016 15.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4296) Ca_chan_IQ PF08763.6 gi|385804393|ref|YP_005840793.1| - 0.1 11.8 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 Voltage gated calcium channel IQ domain DDE_5 PF13546.1 gi|385804394|ref|YP_005840794.1| - 5.5e-20 71.3 0.0 8.7e-20 70.6 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.16 gi|385804394|ref|YP_005840794.1| - 2.8e-17 62.9 0.4 5.2e-17 62.0 0.1 1.6 2 1 0 2 2 2 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|385804394|ref|YP_005840794.1| - 0.00011 21.3 0.5 0.00045 19.3 0.3 1.8 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_6 PF13751.1 gi|385804394|ref|YP_005840794.1| - 0.01 15.8 0.0 0.035 14.1 0.0 1.9 2 0 0 2 2 2 0 Transposase DDE domain Bac_transf PF02397.11 gi|385804397|ref|YP_005840797.1| - 2.8e-61 205.8 0.0 6e-61 204.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial sugar transferase DDE_3 PF13358.1 gi|529167408|ref|YP_005840799.2| - 2.7e-21 75.8 0.0 5.1e-21 74.9 0.0 1.5 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_29 PF13551.1 gi|529167408|ref|YP_005840799.2| - 8.3e-16 58.1 0.1 1.8e-15 57.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|529167408|ref|YP_005840799.2| - 1.9e-09 38.1 0.1 1.4e-08 35.3 0.0 2.4 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|529167408|ref|YP_005840799.2| - 7.4e-09 35.0 3.2 1.9e-08 33.7 0.0 3.3 4 0 0 4 4 4 1 Winged helix-turn helix HTH_28 PF13518.1 gi|529167408|ref|YP_005840799.2| - 1e-07 31.7 0.1 6e-07 29.3 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|529167408|ref|YP_005840799.2| - 2.3e-07 30.2 0.1 1.6e-06 27.5 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain DDE_1 PF03184.14 gi|529167408|ref|YP_005840799.2| - 0.00045 19.4 0.0 0.00081 18.5 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|529167408|ref|YP_005840799.2| - 0.0014 18.7 0.0 0.0037 17.3 0.0 1.7 1 0 0 1 1 1 1 Integrase core domain Terminase_5 PF06056.7 gi|529167408|ref|YP_005840799.2| - 0.0029 17.1 0.0 0.0073 15.8 0.0 1.7 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) Glycos_transf_1 PF00534.15 gi|385804400|ref|YP_005840800.1| - 8.2e-32 109.9 0.0 1.3e-31 109.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|385804400|ref|YP_005840800.1| - 1.5e-19 70.6 0.2 6e-19 68.7 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|385804400|ref|YP_005840800.1| - 3.3e-18 66.1 0.0 7.1e-18 65.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|385804400|ref|YP_005840800.1| - 6.7e-17 61.7 0.1 9.5e-17 61.2 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|385804400|ref|YP_005840800.1| - 2.9e-08 33.6 0.0 4.4e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like DUF3492 PF11997.3 gi|385804400|ref|YP_005840800.1| - 0.00018 21.1 0.3 0.37 10.3 0.4 2.4 2 1 0 2 2 2 2 Domain of unknown function (DUF3492) Glyco_trans_1_2 PF13524.1 gi|385804400|ref|YP_005840800.1| - 0.025 14.8 0.0 0.057 13.6 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_N PF04413.11 gi|385804400|ref|YP_005840800.1| - 0.027 13.6 0.0 0.44 9.6 0.0 2.3 2 0 0 2 2 2 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Glyco_transf_5 PF08323.6 gi|385804400|ref|YP_005840800.1| - 0.12 11.8 0.6 0.71 9.3 0.1 2.0 1 1 1 2 2 2 0 Starch synthase catalytic domain Asn_synthase PF00733.16 gi|385804401|ref|YP_005840801.1| - 4.9e-76 255.6 0.0 8.8e-76 254.7 0.0 1.4 1 1 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.1 gi|385804401|ref|YP_005840801.1| - 9.8e-43 144.8 0.2 3.9e-42 142.9 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|385804401|ref|YP_005840801.1| - 3e-39 133.9 0.1 7.3e-39 132.7 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|385804401|ref|YP_005840801.1| - 0.00055 18.7 0.2 0.57 8.8 0.1 2.3 1 1 1 2 2 2 2 Glutamine amidotransferases class-II DUF3700 PF12481.3 gi|385804401|ref|YP_005840801.1| - 0.0029 16.8 0.1 0.015 14.4 0.1 2.2 2 1 0 2 2 2 1 Aluminium induced protein QueC PF06508.8 gi|385804401|ref|YP_005840801.1| - 0.16 11.2 0.0 0.31 10.2 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC DDE_Tnp_IS66 PF03050.9 gi|385804402|ref|YP_005840802.1| - 7.5e-53 179.4 0.6 1.1e-52 178.9 0.5 1.3 1 0 0 1 1 1 1 Transposase IS66 family DDE_Tnp_IS240 PF13610.1 gi|385804402|ref|YP_005840802.1| - 0.0031 17.4 1.2 0.21 11.5 0.0 2.9 3 0 0 3 3 3 1 DDE domain TBPIP PF07106.8 gi|385804402|ref|YP_005840802.1| - 0.011 15.3 2.7 0.06 12.8 0.3 2.3 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF3166 PF11365.3 gi|385804402|ref|YP_005840802.1| - 0.015 15.7 0.2 0.015 15.7 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3166) FliJ PF02050.11 gi|385804402|ref|YP_005840802.1| - 0.043 13.8 4.7 2.5 8.1 1.6 2.5 2 0 0 2 2 2 0 Flagellar FliJ protein Med9 PF07544.8 gi|385804402|ref|YP_005840802.1| - 0.054 13.2 2.9 0.51 10.1 1.4 2.5 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 DUF305 PF03713.8 gi|385804402|ref|YP_005840802.1| - 0.2 11.4 1.0 0.35 10.6 0.2 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF305) CCDC74_C PF14917.1 gi|385804402|ref|YP_005840802.1| - 0.31 11.1 4.6 0.39 10.7 0.3 2.4 2 0 0 2 2 2 0 Coiled coil protein 74, C terminal SlyX PF04102.7 gi|385804402|ref|YP_005840802.1| - 1.1 9.6 6.8 9.3 6.7 2.4 3.1 2 1 0 2 2 2 0 SlyX Sigma70_ner PF04546.8 gi|385804402|ref|YP_005840802.1| - 4.9 6.6 9.4 5 6.6 3.7 2.2 2 0 0 2 2 2 0 Sigma-70, non-essential region Sulfatase PF00884.18 gi|385804403|ref|YP_005840803.1| - 1.9e-38 132.4 0.1 2.5e-38 131.9 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|385804403|ref|YP_005840803.1| - 4.4e-06 26.2 1.3 0.0022 17.4 0.3 2.5 2 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|385804403|ref|YP_005840803.1| - 0.0065 15.8 0.0 0.014 14.8 0.0 1.5 1 0 0 1 1 1 1 Metalloenzyme superfamily Glycos_transf_1 PF00534.15 gi|385804404|ref|YP_005840804.1| - 2.1e-36 124.9 0.0 5.9e-36 123.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|385804404|ref|YP_005840804.1| - 9.3e-19 67.9 0.0 9.4e-18 64.6 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|385804404|ref|YP_005840804.1| - 1.4e-14 54.0 0.0 2.7e-14 53.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|385804404|ref|YP_005840804.1| - 0.001 18.7 0.0 0.003 17.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|385804404|ref|YP_005840804.1| - 0.038 14.1 0.0 0.068 13.3 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain PMT_2 PF13231.1 gi|385804405|ref|YP_005840805.1| - 3.1e-06 27.1 20.1 3.1e-06 27.1 13.9 2.4 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DDE_Tnp_1 PF01609.16 gi|385804406|ref|YP_005840806.1| - 2.5e-17 63.1 0.0 3.5e-17 62.6 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|385804406|ref|YP_005840806.1| - 0.057 13.4 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Transposase DDE domain QueC PF06508.8 gi|385804407|ref|YP_005840807.1| - 0.12 11.6 0.0 0.2 10.9 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC DDE_Tnp_1 PF01609.16 gi|385804408|ref|YP_005840808.1| - 6.7e-09 35.6 0.1 1e-08 35.0 0.1 1.3 1 0 0 1 1 1 1 Transposase DDE domain Glycos_transf_1 PF00534.15 gi|385804409|ref|YP_005840809.1| - 1.5e-26 92.8 0.0 1.2e-25 89.8 0.0 2.1 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|385804409|ref|YP_005840809.1| - 1e-13 51.5 0.0 1.7e-13 50.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|385804409|ref|YP_005840809.1| - 7.6e-07 29.4 0.0 4.1e-06 27.0 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|385804409|ref|YP_005840809.1| - 0.00014 21.6 0.0 0.048 13.3 0.0 2.5 2 1 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|385804409|ref|YP_005840809.1| - 0.00049 20.3 0.0 0.001 19.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|385804409|ref|YP_005840809.1| - 0.0036 17.1 0.0 0.032 14.0 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like Methyltransf_21 PF05050.7 gi|385804410|ref|YP_005840810.1| - 2.7e-28 99.0 0.0 3.7e-28 98.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|385804410|ref|YP_005840810.1| - 1.1e-06 29.1 0.0 4.7e-06 27.1 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Met_10 PF02475.11 gi|385804410|ref|YP_005840810.1| - 3.2e-05 23.6 0.0 4.1e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein V_cholerae_RfbT PF05575.6 gi|385804410|ref|YP_005840810.1| - 0.00031 19.9 0.0 0.00061 18.9 0.0 1.5 1 1 0 1 1 1 1 Vibrio cholerae RfbT protein Nol1_Nop2_Fmu PF01189.12 gi|385804410|ref|YP_005840810.1| - 0.03 13.7 0.0 0.039 13.3 0.0 1.1 1 0 0 1 1 1 0 NOL1/NOP2/sun family DUF4238 PF14022.1 gi|385804410|ref|YP_005840810.1| - 0.08 12.2 0.1 0.13 11.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4238) DDE_5 PF13546.1 gi|385804412|ref|YP_005840812.1| - 3e-20 72.2 0.0 4.5e-20 71.6 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.16 gi|385804412|ref|YP_005840812.1| - 3.3e-18 66.0 0.3 6e-18 65.1 0.1 1.6 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|385804412|ref|YP_005840812.1| - 0.00019 20.5 0.4 0.00083 18.4 0.3 1.8 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_6 PF13751.1 gi|385804412|ref|YP_005840812.1| - 0.0098 15.8 0.0 0.035 14.1 0.0 1.9 2 0 0 2 2 2 1 Transposase DDE domain Capsule_synth PF05159.9 gi|385804414|ref|YP_005840814.1| - 7.4e-05 22.3 0.1 0.00016 21.2 0.1 1.5 1 0 0 1 1 1 1 Capsule polysaccharide biosynthesis protein Glyphos_transf PF04464.9 gi|385804414|ref|YP_005840814.1| - 0.0038 16.0 0.6 0.015 14.0 0.4 2.0 1 1 0 1 1 1 1 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DUF354 PF04007.7 gi|385804414|ref|YP_005840814.1| - 0.01 14.7 0.0 0.017 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF354) RHH_1 PF01402.16 gi|385804415|ref|YP_005840815.1| - 0.0028 17.4 4.1 0.0034 17.2 0.7 2.4 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family Capsule_synth PF05159.9 gi|385804417|ref|YP_005840817.1| - 6.1e-21 75.0 0.0 9.1e-21 74.5 0.0 1.2 1 0 0 1 1 1 1 Capsule polysaccharide biosynthesis protein DUF4330 PF14221.1 gi|385804418|ref|YP_005840818.1| - 5.4e-33 114.2 15.7 4.2e-11 43.0 0.0 5.1 4 1 0 4 4 4 4 Domain of unknown function (DUF4330) HlyD_3 PF13437.1 gi|385804418|ref|YP_005840818.1| - 0.67 10.3 8.5 3.3 8.1 0.0 4.5 4 1 2 6 6 6 0 HlyD family secretion protein BacA PF02673.13 gi|385804420|ref|YP_005840820.1| - 6.1e-45 153.4 17.6 7.5e-45 153.1 12.2 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA Tim17 PF02466.14 gi|385804420|ref|YP_005840820.1| - 1.4 8.9 12.8 1.8 8.6 2.1 3.0 2 1 0 2 2 2 0 Tim17/Tim22/Tim23/Pmp24 family HTH_11 PF08279.7 gi|385804421|ref|YP_005840821.1| - 0.00013 21.5 0.1 0.0023 17.5 0.0 2.4 2 0 0 2 2 2 1 HTH domain TrmB PF01978.14 gi|385804421|ref|YP_005840821.1| - 0.00019 21.0 0.1 0.00044 19.8 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|385804421|ref|YP_005840821.1| - 0.00036 20.1 0.0 0.011 15.4 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|385804421|ref|YP_005840821.1| - 0.00076 19.0 0.1 0.0018 17.8 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain Ribosomal_S25 PF03297.10 gi|385804421|ref|YP_005840821.1| - 0.0016 18.4 0.0 0.0027 17.7 0.0 1.4 1 0 0 1 1 1 1 S25 ribosomal protein HTH_20 PF12840.2 gi|385804421|ref|YP_005840821.1| - 0.0018 18.0 0.0 0.0071 16.1 0.0 2.1 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|385804421|ref|YP_005840821.1| - 0.016 14.7 0.0 0.057 12.9 0.0 1.9 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Rrf2 PF02082.15 gi|385804421|ref|YP_005840821.1| - 0.019 15.0 0.0 0.051 13.7 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator DUF742 PF05331.6 gi|385804421|ref|YP_005840821.1| - 0.029 13.9 0.1 0.044 13.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) FaeA PF04703.7 gi|385804421|ref|YP_005840821.1| - 0.048 13.8 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 FaeA-like protein HTH_40 PF14493.1 gi|385804421|ref|YP_005840821.1| - 0.056 13.6 0.8 0.24 11.6 0.5 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|385804421|ref|YP_005840821.1| - 0.057 12.8 0.0 0.12 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|385804421|ref|YP_005840821.1| - 0.059 13.0 2.0 0.18 11.5 0.0 2.7 3 0 0 3 3 2 0 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.1 gi|385804421|ref|YP_005840821.1| - 0.075 12.2 0.3 0.36 10.0 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_36 PF13730.1 gi|385804421|ref|YP_005840821.1| - 0.081 13.0 0.1 0.3 11.2 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain SPATIAL PF15256.1 gi|385804421|ref|YP_005840821.1| - 0.084 12.9 0.5 0.12 12.4 0.3 1.2 1 0 0 1 1 1 0 SPATIAL GntR PF00392.16 gi|385804421|ref|YP_005840821.1| - 0.085 12.3 0.2 0.25 10.8 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family DUF86 PF01934.12 gi|385804422|ref|YP_005840822.1| - 3.2e-11 42.8 0.2 3.9e-11 42.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 HTH_20 PF12840.2 gi|385804423|ref|YP_005840823.1| - 0.0021 17.8 1.4 0.0073 16.0 0.1 2.1 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_40 PF14493.1 gi|385804423|ref|YP_005840823.1| - 0.019 15.1 0.2 0.053 13.7 0.1 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.16 gi|385804423|ref|YP_005840823.1| - 0.021 14.2 0.1 0.039 13.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family rve_3 PF13683.1 gi|385804423|ref|YP_005840823.1| - 0.035 13.6 1.4 0.11 11.9 0.1 2.3 1 1 0 2 2 2 0 Integrase core domain Penicillinase_R PF03965.11 gi|385804423|ref|YP_005840823.1| - 0.05 13.7 0.0 0.076 13.1 0.0 1.5 1 1 0 1 1 1 0 Penicillinase repressor HTH_Tnp_ISL3 PF13542.1 gi|385804423|ref|YP_005840823.1| - 0.069 12.3 0.1 0.13 11.4 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_DeoR PF08220.7 gi|385804423|ref|YP_005840823.1| - 0.081 12.4 0.0 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_IclR PF09339.5 gi|385804423|ref|YP_005840823.1| - 0.099 12.2 0.1 0.26 10.9 0.1 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain Antitoxin-MazE PF04014.13 gi|385804426|ref|YP_005840826.1| - 4.6e-09 35.7 0.2 6.3e-09 35.3 0.2 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE HTH_20 PF12840.2 gi|385804428|ref|YP_005840828.1| - 2.8e-10 39.8 0.1 8.8e-07 28.6 0.0 3.3 2 1 1 3 3 3 1 Helix-turn-helix domain TrmB PF01978.14 gi|385804428|ref|YP_005840828.1| - 1.6e-09 37.3 0.0 3.6e-06 26.5 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|385804428|ref|YP_005840828.1| - 2.7e-07 30.1 0.0 0.00023 20.7 0.0 2.9 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|385804428|ref|YP_005840828.1| - 1.1e-06 28.0 0.5 0.042 13.4 0.0 2.8 3 0 0 3 3 3 2 IclR helix-turn-helix domain HTH_29 PF13551.1 gi|385804428|ref|YP_005840828.1| - 5.8e-06 26.4 0.0 0.12 12.5 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn helix MarR PF01047.17 gi|385804428|ref|YP_005840828.1| - 1.3e-05 24.7 0.0 0.007 16.0 0.0 2.6 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|385804428|ref|YP_005840828.1| - 1.8e-05 23.9 0.0 0.094 12.1 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|385804428|ref|YP_005840828.1| - 8.5e-05 22.1 0.1 0.0057 16.2 0.0 2.3 2 0 0 2 2 2 1 HTH domain Rrf2 PF02082.15 gi|385804428|ref|YP_005840828.1| - 0.00011 22.2 0.0 0.039 14.0 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator HTH_36 PF13730.1 gi|385804428|ref|YP_005840828.1| - 0.00013 22.0 0.1 0.00046 20.2 0.0 2.0 3 0 0 3 3 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|385804428|ref|YP_005840828.1| - 0.00016 21.2 0.0 0.054 13.1 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|385804428|ref|YP_005840828.1| - 0.00046 20.4 0.2 0.2 11.9 0.1 2.6 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|385804428|ref|YP_005840828.1| - 0.0005 20.0 0.0 0.21 11.6 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain PadR PF03551.9 gi|385804428|ref|YP_005840828.1| - 0.00084 19.0 0.1 0.014 15.1 0.0 2.7 4 0 0 4 4 2 1 Transcriptional regulator PadR-like family HTH_7 PF02796.10 gi|385804428|ref|YP_005840828.1| - 0.00091 19.0 0.2 1 9.2 0.0 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain of resolvase TetR_N PF00440.18 gi|385804428|ref|YP_005840828.1| - 0.0012 18.4 0.4 0.42 10.2 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_23 PF13384.1 gi|385804428|ref|YP_005840828.1| - 0.0024 17.4 0.0 1.6 8.5 0.0 2.3 2 0 0 2 2 2 1 Homeodomain-like domain FUR PF01475.14 gi|385804428|ref|YP_005840828.1| - 0.0029 17.5 0.1 0.0096 15.8 0.0 1.8 1 1 1 2 2 2 1 Ferric uptake regulator family Sulfolobus_pRN PF05584.6 gi|385804428|ref|YP_005840828.1| - 0.0089 15.9 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein HTH_DeoR PF08220.7 gi|385804428|ref|YP_005840828.1| - 0.011 15.2 0.0 0.21 11.1 0.0 2.4 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_17 PF12728.2 gi|385804428|ref|YP_005840828.1| - 0.015 15.5 0.0 8.1 6.7 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|385804428|ref|YP_005840828.1| - 0.068 13.0 0.0 0.18 11.6 0.0 1.7 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC FaeA PF04703.7 gi|385804428|ref|YP_005840828.1| - 0.071 13.2 0.1 0.16 12.1 0.1 1.5 1 0 0 1 1 1 0 FaeA-like protein Fe_dep_repress PF01325.14 gi|385804428|ref|YP_005840828.1| - 0.091 12.7 0.8 0.45 10.4 0.1 2.4 3 0 0 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain Phage_AlpA PF05930.7 gi|385804428|ref|YP_005840828.1| - 0.14 11.8 0.0 2.5 7.9 0.0 2.4 2 0 0 2 2 2 0 Prophage CP4-57 regulatory protein (AlpA) HTH_9 PF08221.6 gi|385804428|ref|YP_005840828.1| - 0.15 11.9 0.0 9.2 6.2 0.0 2.5 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Antitoxin-MazE PF04014.13 gi|385804429|ref|YP_005840829.1| - 4.2e-09 35.9 0.1 7.7e-09 35.0 0.1 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PIN PF01850.16 gi|385804430|ref|YP_005840830.1| - 0.00018 21.8 0.0 0.00025 21.3 0.0 1.1 1 0 0 1 1 1 1 PIN domain Maf_N PF08383.6 gi|385804430|ref|YP_005840830.1| - 0.072 12.6 0.0 0.18 11.4 0.0 1.7 1 0 0 1 1 1 0 Maf N-terminal region MarR_2 PF12802.2 gi|385804431|ref|YP_005840831.1| - 0.0045 16.6 0.1 0.0073 15.9 0.1 1.3 1 0 0 1 1 1 1 MarR family FaeA PF04703.7 gi|385804431|ref|YP_005840831.1| - 0.032 14.3 0.0 0.046 13.8 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein APH_6_hur PF04655.9 gi|385804431|ref|YP_005840831.1| - 0.054 12.6 0.0 0.063 12.4 0.0 1.1 1 0 0 1 1 1 0 Aminoglycoside/hydroxyurea antibiotic resistance kinase HTH_DeoR PF08220.7 gi|385804431|ref|YP_005840831.1| - 0.065 12.7 0.1 0.11 12.1 0.1 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain NTP_transf_2 PF01909.18 gi|385804433|ref|YP_005840833.1| - 6.1e-18 64.9 0.1 7.2e-18 64.7 0.1 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.2 gi|385804433|ref|YP_005840833.1| - 0.0064 16.0 0.0 0.0064 16.0 0.0 1.1 1 0 0 1 1 1 1 Adenylate cyclase NT domain MdcG PF10620.4 gi|385804433|ref|YP_005840833.1| - 0.0079 15.7 0.1 0.011 15.3 0.1 1.3 1 1 0 1 1 1 1 Phosphoribosyl-dephospho-CoA transferase MdcG DUF294 PF03445.8 gi|385804433|ref|YP_005840833.1| - 0.025 14.2 0.0 0.028 14.0 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 DUF86 PF01934.12 gi|385804434|ref|YP_005840834.1| - 5.3e-28 97.0 0.1 6.1e-28 96.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 RepB-RCR_reg PF10723.4 gi|385804435|ref|YP_005840835.1| - 0.037 13.7 0.2 0.35 10.6 0.1 2.1 2 1 0 2 2 2 0 Replication regulatory protein RepB PIN PF01850.16 gi|385804436|ref|YP_005840836.1| - 4.5e-12 46.3 0.2 5.2e-12 46.1 0.2 1.1 1 0 0 1 1 1 1 PIN domain NTP_transf_2 PF01909.18 gi|385804437|ref|YP_005840837.1| - 0.0018 18.5 0.1 0.0024 18.1 0.1 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain HTH_45 PF14947.1 gi|385804440|ref|YP_005840840.1| - 5.2e-05 22.9 0.0 7.2e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix Mrr_N PF14338.1 gi|385804440|ref|YP_005840840.1| - 0.051 13.6 0.0 0.1 12.7 0.0 1.5 1 1 1 2 2 2 0 Mrr N-terminal domain RepL PF05732.6 gi|385804440|ref|YP_005840840.1| - 0.082 12.1 0.0 0.083 12.1 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_12 PF08461.5 gi|385804440|ref|YP_005840840.1| - 0.12 12.1 0.1 0.31 10.8 0.1 1.8 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain DUF433 PF04255.9 gi|385804441|ref|YP_005840841.1| - 2.7e-16 58.6 0.1 3.2e-16 58.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF433) NTP_transf_2 PF01909.18 gi|385804443|ref|YP_005840843.1| - 4.7e-06 26.8 0.1 6.7e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.12 gi|385804444|ref|YP_005840844.1| - 1.2e-06 28.2 0.1 1.3e-06 28.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 SMK-1 PF04802.10 gi|385804444|ref|YP_005840844.1| - 0.085 12.3 0.0 0.091 12.2 0.0 1.2 1 0 0 1 1 1 0 Component of IIS longevity pathway SMK-1 RHH_1 PF01402.16 gi|385804444|ref|YP_005840844.1| - 0.12 12.2 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family DUF86 PF01934.12 gi|385804445|ref|YP_005840845.1| - 9.6e-12 44.6 0.1 1e-11 44.4 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF217 PF02697.9 gi|385804448|ref|YP_005840848.1| - 1.1e-12 48.0 0.2 1.4e-12 47.6 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 DUF433 PF04255.9 gi|385804449|ref|YP_005840849.1| - 5.6e-14 51.2 0.0 7.8e-14 50.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF433) HTH_20 PF12840.2 gi|385804452|ref|YP_005840852.1| - 2.3e-05 24.0 0.0 3.7e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|385804452|ref|YP_005840852.1| - 0.0043 16.7 0.0 0.0067 16.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|385804452|ref|YP_005840852.1| - 0.0078 15.8 0.1 0.014 15.0 0.1 1.3 1 0 0 1 1 1 1 MarR family Sigma70_r1_1 PF03979.9 gi|385804452|ref|YP_005840852.1| - 0.043 13.7 0.0 1.7 8.5 0.0 2.1 1 1 1 2 2 2 0 Sigma-70 factor, region 1.1 HTH_24 PF13412.1 gi|385804452|ref|YP_005840852.1| - 0.057 12.8 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Bac_DNA_binding PF00216.16 gi|385804452|ref|YP_005840852.1| - 0.072 13.1 0.0 0.2 11.6 0.0 1.7 2 0 0 2 2 2 0 Bacterial DNA-binding protein UPF0150 PF03681.10 gi|385804455|ref|YP_005840855.1| - 2.4e-05 23.8 0.2 0.00016 21.2 0.0 2.3 2 1 0 2 2 2 1 Uncharacterised protein family (UPF0150) SH3_1 PF00018.23 gi|385804455|ref|YP_005840855.1| - 0.022 14.1 0.1 0.051 12.9 0.0 1.6 1 0 0 1 1 1 0 SH3 domain HTH_20 PF12840.2 gi|385804456|ref|YP_005840856.1| - 0.00014 21.5 0.0 0.00019 21.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|385804456|ref|YP_005840856.1| - 0.00021 21.1 0.0 0.00028 20.7 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|385804456|ref|YP_005840856.1| - 0.00032 20.2 0.0 0.00043 19.8 0.0 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|385804456|ref|YP_005840856.1| - 0.00032 20.0 0.0 0.00044 19.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FaeA PF04703.7 gi|385804456|ref|YP_005840856.1| - 0.00076 19.5 0.0 0.00089 19.3 0.0 1.1 1 0 0 1 1 1 1 FaeA-like protein TrmB PF01978.14 gi|385804456|ref|YP_005840856.1| - 0.00087 18.9 0.0 0.0011 18.6 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_30 PF13556.1 gi|385804456|ref|YP_005840856.1| - 0.0012 18.4 0.0 0.0015 18.0 0.0 1.2 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.2 gi|385804456|ref|YP_005840856.1| - 0.0019 17.8 0.0 0.0027 17.3 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_10 PF04967.7 gi|385804456|ref|YP_005840856.1| - 0.0025 17.3 0.0 0.004 16.7 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_AsnC-type PF13404.1 gi|385804456|ref|YP_005840856.1| - 0.0038 16.7 0.0 0.0056 16.1 0.0 1.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|385804456|ref|YP_005840856.1| - 0.0039 16.8 0.0 0.005 16.5 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_1 PF00126.22 gi|385804456|ref|YP_005840856.1| - 0.0039 16.8 0.0 0.0056 16.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_5 PF01022.15 gi|385804456|ref|YP_005840856.1| - 0.026 14.2 0.0 0.03 13.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.11 gi|385804456|ref|YP_005840856.1| - 0.026 14.6 0.0 0.042 13.9 0.0 1.4 1 1 0 1 1 1 0 Penicillinase repressor HTH_8 PF02954.14 gi|385804456|ref|YP_005840856.1| - 0.063 12.8 0.3 0.11 12.0 0.0 1.5 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family AstA PF04958.7 gi|385804456|ref|YP_005840856.1| - 0.13 10.6 0.0 0.14 10.5 0.0 1.1 1 0 0 1 1 1 0 Arginine N-succinyltransferase beta subunit Epimerase PF01370.16 gi|385804457|ref|YP_005840857.1| - 3.7e-21 75.6 0.0 7.4e-21 74.6 0.0 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|385804457|ref|YP_005840857.1| - 9.9e-05 21.3 0.1 0.0029 16.5 0.0 2.3 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|385804457|ref|YP_005840857.1| - 0.00022 21.1 0.0 0.0004 20.3 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase RmlD_sub_bind PF04321.12 gi|385804457|ref|YP_005840857.1| - 0.00029 19.8 0.2 0.03 13.2 0.1 3.1 2 2 0 2 2 2 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|385804457|ref|YP_005840857.1| - 0.0096 14.6 0.1 0.029 13.0 0.1 1.7 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family KR PF08659.5 gi|385804457|ref|YP_005840857.1| - 0.12 12.0 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 KR domain Epimerase PF01370.16 gi|385804458|ref|YP_005840858.1| - 1.2e-50 172.2 0.0 1.5e-50 171.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|385804458|ref|YP_005840858.1| - 3.4e-31 107.9 0.0 4.5e-31 107.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|385804458|ref|YP_005840858.1| - 1.4e-18 66.8 0.1 1.7e-18 66.5 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|385804458|ref|YP_005840858.1| - 4.8e-16 59.2 0.0 6.9e-16 58.7 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|385804458|ref|YP_005840858.1| - 2.9e-14 52.6 0.0 1.6e-13 50.2 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|385804458|ref|YP_005840858.1| - 5.3e-14 51.7 0.1 2.4e-13 49.6 0.0 1.8 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|385804458|ref|YP_005840858.1| - 4.1e-08 33.3 0.1 7.1e-08 32.5 0.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|385804458|ref|YP_005840858.1| - 0.00023 20.5 0.0 0.00053 19.3 0.0 1.6 1 1 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|385804458|ref|YP_005840858.1| - 0.00025 20.7 0.0 0.00039 20.1 0.0 1.4 1 0 0 1 1 1 1 KR domain Saccharop_dh PF03435.13 gi|385804458|ref|YP_005840858.1| - 0.0038 16.2 0.0 0.0059 15.6 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase AP_endonuc_2 PF01261.19 gi|385804458|ref|YP_005840858.1| - 0.13 11.5 0.4 1.1 8.4 0.3 2.3 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Epimerase PF01370.16 gi|385804459|ref|YP_005840859.1| - 4.4e-37 127.7 0.0 5.4e-37 127.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|385804459|ref|YP_005840859.1| - 1.7e-25 89.4 0.1 2.1e-25 89.2 0.1 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|385804459|ref|YP_005840859.1| - 7.8e-19 67.4 0.0 2.1e-18 66.0 0.0 1.6 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|385804459|ref|YP_005840859.1| - 2.1e-16 59.7 0.0 8e-16 57.7 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|385804459|ref|YP_005840859.1| - 3.7e-11 42.4 0.0 2.4e-08 33.2 0.0 2.3 2 0 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|385804459|ref|YP_005840859.1| - 4.2e-09 36.6 1.4 8e-09 35.7 0.1 2.1 2 1 0 2 2 2 1 NADH(P)-binding Semialdhyde_dh PF01118.19 gi|385804459|ref|YP_005840859.1| - 2.2e-05 24.7 0.1 5e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|385804459|ref|YP_005840859.1| - 0.00035 20.4 0.5 0.00074 19.4 0.1 1.7 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus adh_short PF00106.20 gi|385804459|ref|YP_005840859.1| - 0.00047 20.1 1.1 0.0015 18.4 0.9 1.8 2 0 0 2 2 2 1 short chain dehydrogenase Saccharop_dh PF03435.13 gi|385804459|ref|YP_005840859.1| - 0.00086 18.3 0.3 0.0013 17.8 0.2 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NmrA PF05368.8 gi|385804459|ref|YP_005840859.1| - 0.0011 18.3 0.3 0.0057 15.9 0.1 2.2 2 1 0 2 2 2 1 NmrA-like family Ldh_1_N PF00056.18 gi|385804459|ref|YP_005840859.1| - 0.003 17.3 0.1 0.0053 16.5 0.1 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|385804459|ref|YP_005840859.1| - 0.027 14.4 1.9 0.05 13.6 0.2 2.0 2 0 0 2 2 2 0 TrkA-N domain Epimerase_Csub PF13950.1 gi|385804459|ref|YP_005840859.1| - 0.054 13.4 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit DUF1131 PF06572.7 gi|385804459|ref|YP_005840859.1| - 0.11 11.9 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1131) TrmB PF01978.14 gi|385804460|ref|YP_005840860.1| - 1.8e-18 65.9 0.1 5e-18 64.5 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|385804460|ref|YP_005840860.1| - 0.00097 18.6 0.0 0.0022 17.5 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|385804460|ref|YP_005840860.1| - 0.0049 16.2 0.0 0.013 14.8 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|385804460|ref|YP_005840860.1| - 0.024 14.7 0.0 0.049 13.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator RHH_3 PF12651.2 gi|385804460|ref|YP_005840860.1| - 0.073 12.8 0.5 8.6 6.1 0.0 2.9 3 0 0 3 3 3 0 Ribbon-helix-helix domain YaeQ PF07152.7 gi|385804460|ref|YP_005840860.1| - 0.1 11.8 0.0 0.37 10.1 0.0 1.8 2 1 1 3 3 3 0 YaeQ protein NTP_transferase PF00483.18 gi|385804462|ref|YP_005840862.1| - 6e-38 130.5 0.0 7.5e-38 130.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|385804462|ref|YP_005840862.1| - 8e-14 50.4 15.7 2.1e-07 30.1 1.2 4.9 2 2 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|385804462|ref|YP_005840862.1| - 9e-14 51.8 0.0 1.9e-13 50.8 0.0 1.6 2 0 0 2 2 2 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|385804462|ref|YP_005840862.1| - 2.5e-07 30.1 15.5 0.0008 18.9 0.9 4.3 3 1 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase SIS PF01380.17 gi|385804463|ref|YP_005840863.1| - 8.4e-51 170.9 0.2 3.8e-28 97.7 0.1 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|385804463|ref|YP_005840863.1| - 6.5e-25 87.6 0.0 1.3e-24 86.6 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|385804463|ref|YP_005840863.1| - 6.4e-21 74.3 0.0 1.2e-20 73.4 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|385804463|ref|YP_005840863.1| - 4.7e-19 68.3 0.1 6.3e-14 51.4 0.0 2.6 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_4 PF13230.1 gi|385804463|ref|YP_005840863.1| - 0.0026 16.4 0.0 0.0043 15.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DUF4154 PF13689.1 gi|385804463|ref|YP_005840863.1| - 0.0052 16.4 0.1 0.048 13.2 0.0 2.4 3 0 0 3 3 3 1 Domain of unknown function (DUF4154) SIS_2 PF13580.1 gi|385804463|ref|YP_005840863.1| - 0.0056 16.4 0.0 0.073 12.7 0.0 2.3 2 0 0 2 2 2 1 SIS domain NTP_transferase PF00483.18 gi|385804465|ref|YP_005840865.1| - 4e-40 137.6 0.0 5.5e-40 137.2 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|385804465|ref|YP_005840865.1| - 7.9e-14 52.0 0.0 1.2e-13 51.3 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|385804465|ref|YP_005840865.1| - 9.4e-11 40.7 19.6 2.5e-06 26.7 1.4 4.5 2 1 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|385804465|ref|YP_005840865.1| - 0.012 15.1 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TrmB PF01978.14 gi|385804466|ref|YP_005840866.1| - 2.9e-05 23.7 0.2 3.7e-05 23.3 0.1 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sulfolobus_pRN PF05584.6 gi|385804466|ref|YP_005840866.1| - 0.0022 17.8 0.0 0.0028 17.5 0.0 1.1 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein HTH_IclR PF09339.5 gi|385804466|ref|YP_005840866.1| - 0.0023 17.4 0.3 0.0029 17.1 0.2 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|385804466|ref|YP_005840866.1| - 0.0076 15.7 0.0 0.0087 15.5 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_20 PF12840.2 gi|385804466|ref|YP_005840866.1| - 0.0083 15.9 0.2 0.0097 15.6 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Mga PF08280.6 gi|385804466|ref|YP_005840866.1| - 0.025 14.3 0.7 0.035 13.8 0.5 1.2 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain MarR PF01047.17 gi|385804466|ref|YP_005840866.1| - 0.032 13.9 0.2 0.038 13.6 0.1 1.2 1 0 0 1 1 1 0 MarR family PadR PF03551.9 gi|385804466|ref|YP_005840866.1| - 0.033 13.9 0.1 0.048 13.4 0.1 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|385804466|ref|YP_005840866.1| - 0.088 13.1 0.1 0.1 12.8 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|385804466|ref|YP_005840866.1| - 0.12 12.0 0.2 0.17 11.5 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family FAD_binding_2 PF00890.19 gi|385804467|ref|YP_005840867.1| - 2.8e-124 415.1 6.9 2.8e-124 415.1 4.8 1.8 2 0 0 2 2 2 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|385804467|ref|YP_005840867.1| - 7e-39 132.6 0.4 1.1e-38 132.0 0.3 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.19 gi|385804467|ref|YP_005840867.1| - 7.5e-09 34.9 2.6 7.1e-07 28.4 1.7 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|385804467|ref|YP_005840867.1| - 4.5e-07 29.9 12.5 3.2e-06 27.1 6.4 3.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|385804467|ref|YP_005840867.1| - 0.00015 20.3 2.6 0.00017 20.1 0.7 1.9 3 0 0 3 3 3 1 HI0933-like protein Thi4 PF01946.12 gi|385804467|ref|YP_005840867.1| - 0.00054 19.1 2.0 0.0033 16.5 0.3 2.5 3 0 0 3 3 3 1 Thi4 family GIDA PF01134.17 gi|385804467|ref|YP_005840867.1| - 0.0019 17.1 3.6 0.0019 17.1 2.5 1.9 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|385804467|ref|YP_005840867.1| - 0.0036 16.4 7.1 0.0036 16.4 4.9 1.9 2 1 0 2 2 2 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.16 gi|385804467|ref|YP_005840867.1| - 0.0037 16.8 0.1 0.0086 15.6 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.14 gi|385804467|ref|YP_005840867.1| - 0.0071 15.4 1.0 0.013 14.5 0.7 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_7 PF13241.1 gi|385804467|ref|YP_005840867.1| - 0.022 15.0 0.0 0.052 13.8 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox_3 PF13738.1 gi|385804467|ref|YP_005840867.1| - 0.038 14.0 0.7 0.098 12.6 0.5 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|385804467|ref|YP_005840867.1| - 0.045 13.7 0.5 0.18 11.8 0.3 2.1 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|385804467|ref|YP_005840867.1| - 0.095 13.1 2.0 0.22 11.9 0.7 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Fer2_3 PF13085.1 gi|385804468|ref|YP_005840868.1| - 1.1e-33 115.3 1.1 3.2e-33 113.8 0.0 2.1 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|385804468|ref|YP_005840868.1| - 2.3e-11 43.5 4.2 4.7e-11 42.5 2.9 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|385804468|ref|YP_005840868.1| - 2.8e-06 27.5 3.9 7e-06 26.2 2.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|385804468|ref|YP_005840868.1| - 1.3e-05 25.3 5.6 1.3e-05 25.3 3.9 2.0 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|385804468|ref|YP_005840868.1| - 1.7e-05 25.0 5.5 7.7e-05 22.9 3.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|385804468|ref|YP_005840868.1| - 5.8e-05 23.4 6.8 0.051 14.0 0.1 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|385804468|ref|YP_005840868.1| - 0.00011 21.9 7.4 0.00026 20.7 5.1 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain YtkA PF13115.1 gi|385804468|ref|YP_005840868.1| - 0.005 17.1 1.1 0.012 15.9 0.0 2.2 3 0 0 3 3 3 1 YtkA-like Fer4_2 PF12797.2 gi|385804468|ref|YP_005840868.1| - 0.0065 16.3 8.3 0.011 15.6 0.8 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_20 PF14691.1 gi|385804468|ref|YP_005840868.1| - 0.033 13.7 6.0 0.93 9.1 0.2 2.4 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.1 gi|385804468|ref|YP_005840868.1| - 0.11 13.2 9.5 1.1 10.0 1.8 2.6 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|385804468|ref|YP_005840868.1| - 0.17 11.7 9.6 0.25 11.2 1.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|385804468|ref|YP_005840868.1| - 0.93 9.2 8.8 2.6 7.7 1.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|385804468|ref|YP_005840868.1| - 1.5 9.3 14.1 1.3 9.5 1.6 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|385804468|ref|YP_005840868.1| - 8.8 6.2 10.0 1.2e+02 2.5 7.0 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|385804468|ref|YP_005840868.1| - 9.6 6.8 9.1 27 5.4 2.0 2.9 1 1 1 2 2 2 0 4Fe-4S single cluster domain Sdh_cyt PF01127.17 gi|385804469|ref|YP_005840869.1| - 2.4e-11 43.5 7.7 2.8e-11 43.3 5.3 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FA_hydroxylase PF04116.8 gi|385804469|ref|YP_005840869.1| - 0.065 13.6 5.5 0.086 13.2 3.8 1.4 1 1 0 1 1 1 0 Fatty acid hydroxylase superfamily 7tm_3 PF00003.17 gi|385804469|ref|YP_005840869.1| - 0.14 11.4 2.8 0.19 11.0 1.9 1.3 1 0 0 1 1 1 0 7 transmembrane sweet-taste receptor of 3 GCPR Colicin_V PF02674.11 gi|385804469|ref|YP_005840869.1| - 0.27 11.0 5.9 0.32 10.8 4.1 1.1 1 0 0 1 1 1 0 Colicin V production protein DUF3040 PF11239.3 gi|385804469|ref|YP_005840869.1| - 4.6 7.3 6.4 7.3 6.7 1.6 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) Sdh_cyt PF01127.17 gi|385804470|ref|YP_005840870.1| - 2.7e-22 78.8 4.9 3.1e-22 78.6 3.4 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Ferric_reduct PF01794.14 gi|385804470|ref|YP_005840870.1| - 0.081 13.0 5.6 0.13 12.3 3.9 1.5 1 1 0 1 1 1 0 Ferric reductase like transmembrane component BH4 PF02180.12 gi|385804470|ref|YP_005840870.1| - 0.1 12.1 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Bcl-2 homology region 4 PgaD PF13994.1 gi|385804470|ref|YP_005840870.1| - 0.17 11.3 4.0 0.28 10.6 2.8 1.3 1 0 0 1 1 1 0 PgaD-like protein Tox-ODYAM1 PF15642.1 gi|385804470|ref|YP_005840870.1| - 0.17 10.4 0.1 0.24 10.0 0.1 1.3 1 1 0 1 1 1 0 Toxin in Odyssella and Amoebophilus TusA PF01206.12 gi|385804472|ref|YP_005840872.1| - 0.038 13.5 0.0 0.071 12.7 0.0 1.5 1 1 0 1 1 1 0 Sulfurtransferase TusA DUF4006 PF13179.1 gi|385804472|ref|YP_005840872.1| - 0.076 12.5 0.6 6.9 6.3 0.0 2.4 2 1 0 2 2 2 0 Family of unknown function (DUF4006) TOBE PF03459.12 gi|385804472|ref|YP_005840872.1| - 0.11 12.5 0.1 0.22 11.6 0.1 1.5 1 0 0 1 1 1 0 TOBE domain tRNA_anti-like PF12869.2 gi|385804472|ref|YP_005840872.1| - 0.39 10.1 5.4 0.36 10.3 0.1 2.7 2 1 1 3 3 3 0 tRNA_anti-like DUF3753 PF12575.3 gi|385804472|ref|YP_005840872.1| - 3.5 7.4 5.4 0.32 10.8 0.5 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3753) SpoVR PF04293.8 gi|385804474|ref|YP_005840874.1| - 4.5e-85 285.5 7.0 1.5e-70 237.7 0.2 2.2 2 0 0 2 2 2 2 SpoVR like protein DUF444 PF04285.7 gi|385804475|ref|YP_005840875.1| - 1.4e-92 310.5 0.1 1.9e-92 310.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF444) AAA_PrkA PF08298.6 gi|385804476|ref|YP_005840876.1| - 9.2e-14 50.8 0.0 7.7e-09 34.6 0.0 3.8 2 1 0 2 2 2 2 PrkA AAA domain PrkA PF06798.7 gi|385804476|ref|YP_005840876.1| - 2.1e-09 37.0 1.2 4.7e-09 35.8 0.1 2.1 2 1 0 2 2 2 1 PrkA serine protein kinase C-terminal domain PrkA PF06798.7 gi|385804477|ref|YP_005840877.1| - 4.5e-79 265.3 5.2 8.8e-79 264.3 3.6 1.5 1 0 0 1 1 1 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.6 gi|385804477|ref|YP_005840877.1| - 6.5e-66 222.4 0.0 1.1e-65 221.6 0.0 1.3 1 0 0 1 1 1 1 PrkA AAA domain AAA_5 PF07728.9 gi|385804477|ref|YP_005840877.1| - 0.028 14.1 0.4 3.1 7.5 0.3 2.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RecX PF02631.11 gi|385804477|ref|YP_005840877.1| - 0.076 13.2 1.2 4.5 7.5 0.8 2.5 1 1 0 1 1 1 0 RecX family UPF0179 PF03684.8 gi|385804478|ref|YP_005840878.1| - 2e-49 166.8 0.2 2.2e-49 166.7 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.1 gi|385804478|ref|YP_005840878.1| - 0.0018 18.2 0.3 0.014 15.3 0.0 2.1 2 0 0 2 2 2 1 Transposase DDE domain AstE_AspA PF04952.9 gi|385804479|ref|YP_005840879.1| - 1e-14 54.1 0.0 2e-14 53.2 0.0 1.5 1 1 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family DUF309 PF03745.9 gi|385804480|ref|YP_005840880.1| - 7.3e-14 50.9 0.2 1e-13 50.5 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF309) RPE65 PF03055.10 gi|385804481|ref|YP_005840881.1| - 1.3e-108 363.6 0.0 1.5e-108 363.4 0.0 1.0 1 0 0 1 1 1 1 Retinal pigment epithelial membrane protein DUF3735 PF12537.3 gi|385804482|ref|YP_005840882.1| - 0.084 12.9 0.0 0.39 10.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3735) Amidohydro_1 PF01979.15 gi|385804483|ref|YP_005840883.1| - 4.6e-22 79.1 0.5 5.8e-20 72.2 0.3 2.2 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|385804483|ref|YP_005840883.1| - 1.5e-08 35.0 8.1 8.6e-08 32.5 5.6 2.5 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|385804483|ref|YP_005840883.1| - 5.4e-07 29.3 0.1 1.2e-06 28.2 0.1 1.7 1 0 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|385804483|ref|YP_005840883.1| - 4.6e-05 22.4 0.0 7.4e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.6 gi|385804483|ref|YP_005840883.1| - 0.016 14.4 7.3 0.26 10.4 0.3 3.0 1 1 2 3 3 3 0 Amidohydrolase family HD PF01966.17 gi|385804484|ref|YP_005840884.1| - 8.3e-11 41.9 0.6 1.9e-10 40.8 0.4 1.7 1 0 0 1 1 1 1 HD domain UPF0052 PF01933.13 gi|385804485|ref|YP_005840885.1| - 4.4e-41 141.1 0.2 5.5e-41 140.8 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 Dus PF01207.12 gi|385804486|ref|YP_005840886.1| - 4.1e-05 22.5 1.3 0.00024 20.0 0.9 1.9 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) CitG PF01874.11 gi|385804487|ref|YP_005840887.1| - 6.9e-59 199.3 3.2 8.4e-59 199.0 2.2 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.7 gi|385804488|ref|YP_005840888.1| - 2.2e-35 121.8 0.0 2.1e-30 105.6 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF447) Ribosomal_S17e PF00833.13 gi|385804489|ref|YP_005840889.1| - 1.5e-13 50.5 0.0 1.8e-13 50.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S17 DUF4019 PF13211.1 gi|385804489|ref|YP_005840889.1| - 0.026 14.7 0.0 0.028 14.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4019) PemK PF02452.12 gi|385804490|ref|YP_005840890.1| - 0.0044 17.2 0.0 0.0052 16.9 0.0 1.1 1 0 0 1 1 1 1 PemK-like protein CRISPR_Cse2 PF09485.5 gi|385804490|ref|YP_005840890.1| - 0.0063 16.5 0.2 0.0065 16.5 0.1 1.1 1 0 0 1 1 1 1 CRISPR-associated protein Cse2 (CRISPR_cse2) GT36_AF PF06205.6 gi|385804490|ref|YP_005840890.1| - 0.1 12.3 0.1 0.18 11.5 0.1 1.3 1 0 0 1 1 1 0 Glycosyltransferase 36 associated family Carboxyl_trans PF01039.17 gi|385804491|ref|YP_005840891.1| - 3.5e-199 662.2 0.0 4e-199 662.0 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|385804491|ref|YP_005840891.1| - 0.0089 15.2 0.0 0.03 13.5 0.0 1.8 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) Zn-ribbon_8 PF09723.5 gi|385804492|ref|YP_005840892.1| - 0.0057 16.5 0.8 1.5 8.8 0.0 2.1 1 1 2 3 3 3 3 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|385804492|ref|YP_005840892.1| - 0.018 15.3 0.2 0.025 14.8 0.1 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar DUF951 PF06107.6 gi|385804492|ref|YP_005840892.1| - 0.029 13.8 0.2 0.037 13.5 0.1 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF951) zf-Di19 PF05605.7 gi|385804492|ref|YP_005840892.1| - 0.041 13.9 0.7 0.079 13.0 0.5 1.4 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-C4pol PF14260.1 gi|385804492|ref|YP_005840892.1| - 0.056 13.4 1.0 1.5 8.8 0.7 2.0 1 1 1 2 2 2 0 C4-type zinc-finger of DNA polymerase delta zinc_ribbon_2 PF13240.1 gi|385804492|ref|YP_005840892.1| - 0.081 12.4 0.3 6 6.4 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|385804492|ref|YP_005840892.1| - 0.096 12.5 1.2 0.21 11.4 0.8 1.6 1 1 0 1 1 1 0 Double zinc ribbon Rubredoxin PF00301.15 gi|385804492|ref|YP_005840892.1| - 0.1 12.5 1.2 0.21 11.5 0.8 1.6 1 1 0 1 1 1 0 Rubredoxin zf-ribbon_3 PF13248.1 gi|385804492|ref|YP_005840892.1| - 0.18 11.0 2.3 2 7.7 1.6 2.0 1 1 0 1 1 1 0 zinc-ribbon domain AhpC-TSA PF00578.16 gi|385804493|ref|YP_005840893.1| - 2.1e-31 108.1 0.0 2.5e-31 107.9 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|385804493|ref|YP_005840893.1| - 2e-21 76.0 0.0 2.3e-21 75.8 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|385804493|ref|YP_005840893.1| - 0.0024 17.7 0.0 0.15 12.0 0.0 2.1 2 0 0 2 2 2 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.7 gi|385804493|ref|YP_005840893.1| - 0.012 15.0 0.0 0.016 14.6 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) AdoMet_dc PF02675.10 gi|385804493|ref|YP_005840893.1| - 0.15 11.9 0.0 0.23 11.3 0.0 1.2 1 0 0 1 1 1 0 S-adenosylmethionine decarboxylase ILVD_EDD PF00920.16 gi|385804494|ref|YP_005840894.1| - 3.2e-208 692.3 3.5 3.6e-208 692.2 2.4 1.0 1 0 0 1 1 1 1 Dehydratase family MoCF_biosynth PF00994.19 gi|385804495|ref|YP_005840895.1| - 1.7e-27 95.5 1.0 2.4e-27 95.0 0.7 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain TIM-br_sig_trns PF09370.5 gi|385804495|ref|YP_005840895.1| - 0.033 13.2 0.6 0.047 12.7 0.4 1.1 1 0 0 1 1 1 0 TIM-barrel signal transduction protein Kinase-PPPase PF03618.9 gi|385804495|ref|YP_005840895.1| - 0.046 13.2 0.4 0.061 12.8 0.3 1.2 1 0 0 1 1 1 0 Kinase/pyrophosphorylase HTH_5 PF01022.15 gi|385804496|ref|YP_005840896.1| - 6.6e-05 22.5 0.0 0.00012 21.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|385804496|ref|YP_005840896.1| - 0.00014 21.5 0.1 0.00026 20.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.2 gi|385804496|ref|YP_005840896.1| - 0.0083 15.9 0.0 0.019 14.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|385804496|ref|YP_005840896.1| - 0.01 15.4 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|385804496|ref|YP_005840896.1| - 0.02 14.5 0.0 0.043 13.4 0.0 1.5 1 0 0 1 1 1 0 HTH domain MarR_2 PF12802.2 gi|385804496|ref|YP_005840896.1| - 0.031 13.9 0.0 0.063 12.9 0.0 1.4 1 0 0 1 1 1 0 MarR family GntR PF00392.16 gi|385804496|ref|YP_005840896.1| - 0.073 12.5 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|385804496|ref|YP_005840896.1| - 0.097 12.4 0.1 0.43 10.4 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|385804496|ref|YP_005840896.1| - 0.14 12.1 0.0 0.58 10.1 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.1 gi|385804496|ref|YP_005840896.1| - 0.16 12.1 0.0 0.34 11.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain ADH_zinc_N PF00107.21 gi|385804497|ref|YP_005840897.1| - 1.1e-38 131.6 0.0 2e-38 130.9 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|385804497|ref|YP_005840897.1| - 1.4e-21 77.7 0.0 3.1e-21 76.5 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|385804497|ref|YP_005840897.1| - 6.9e-20 70.8 0.0 1.4e-19 69.8 0.0 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain DapB_N PF01113.15 gi|385804497|ref|YP_005840897.1| - 0.0018 18.2 0.1 0.0035 17.2 0.1 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_10 PF13460.1 gi|385804497|ref|YP_005840897.1| - 0.0065 16.4 0.1 0.01 15.8 0.1 1.4 1 0 0 1 1 1 1 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|385804497|ref|YP_005840897.1| - 0.012 15.3 0.2 0.027 14.2 0.1 1.5 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AlaDh_PNT_C PF01262.16 gi|385804497|ref|YP_005840897.1| - 0.015 14.9 0.3 0.032 13.8 0.0 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Semialdhyde_dh PF01118.19 gi|385804497|ref|YP_005840897.1| - 0.052 13.8 0.2 0.092 13.0 0.2 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DUF2493 PF10686.4 gi|385804497|ref|YP_005840897.1| - 0.1 12.1 1.0 0.21 11.1 0.5 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2493) Presenilin PF01080.12 gi|385804498|ref|YP_005840898.1| - 0.13 11.0 1.5 0.16 10.8 1.0 1.0 1 0 0 1 1 1 0 Presenilin eRF1_2 PF03464.10 gi|385804500|ref|YP_005840900.1| - 0.00017 21.9 0.0 0.00038 20.8 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 2 Laminin_II PF06009.7 gi|385804500|ref|YP_005840900.1| - 0.0022 17.7 3.5 0.0065 16.2 2.4 1.7 1 0 0 1 1 1 1 Laminin Domain II Tropomyosin_1 PF12718.2 gi|385804500|ref|YP_005840900.1| - 0.0069 16.2 13.7 0.0091 15.8 6.3 2.2 2 0 0 2 2 2 1 Tropomyosin like Mnd1 PF03962.10 gi|385804500|ref|YP_005840900.1| - 0.01 15.4 10.1 0.01 15.4 7.0 1.7 2 0 0 2 2 2 0 Mnd1 family TMF_DNA_bd PF12329.3 gi|385804500|ref|YP_005840900.1| - 0.053 13.3 13.0 0.14 12.0 9.0 1.7 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding GAS PF13851.1 gi|385804500|ref|YP_005840900.1| - 0.069 12.3 10.1 0.019 14.1 4.6 1.7 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding Fmp27_WPPW PF10359.4 gi|385804500|ref|YP_005840900.1| - 0.1 10.9 9.3 0.027 12.9 3.8 1.7 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain DivIC PF04977.10 gi|385804500|ref|YP_005840900.1| - 0.1 12.0 11.8 0.23 10.9 2.1 2.5 1 1 1 2 2 2 0 Septum formation initiator TACC PF05010.9 gi|385804500|ref|YP_005840900.1| - 0.11 12.2 6.2 0.049 13.3 2.4 1.7 2 0 0 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC) ERM PF00769.14 gi|385804500|ref|YP_005840900.1| - 0.21 11.0 14.9 0.034 13.6 6.9 1.9 2 0 0 2 2 2 0 Ezrin/radixin/moesin family Herpes_UL36 PF03586.8 gi|385804500|ref|YP_005840900.1| - 0.65 9.0 0.0 0.65 9.0 0.0 2.3 2 1 0 2 2 2 0 Herpesvirus UL36 tegument protein CALCOCO1 PF07888.6 gi|385804500|ref|YP_005840900.1| - 1.2 7.3 12.1 0.61 8.3 5.6 1.9 2 0 0 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like Baculo_PEP_C PF04513.7 gi|385804500|ref|YP_005840900.1| - 1.2 8.9 4.2 2.7 7.7 0.9 2.6 3 0 0 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_13 PF13166.1 gi|385804500|ref|YP_005840900.1| - 1.3 7.3 6.9 0.21 10.0 2.3 1.3 2 0 0 2 2 2 0 AAA domain Tropomyosin PF00261.15 gi|385804500|ref|YP_005840900.1| - 1.8 7.6 20.6 0.15 11.1 8.7 2.1 2 0 0 2 2 2 0 Tropomyosin IncA PF04156.9 gi|385804500|ref|YP_005840900.1| - 2 8.0 18.3 0.16 11.5 8.6 2.0 2 0 0 2 2 2 0 IncA protein Transposase_22 PF02994.9 gi|385804500|ref|YP_005840900.1| - 2 6.8 10.4 0.2 10.1 4.2 1.4 2 0 0 2 2 2 0 L1 transposable element Ax_dynein_light PF10211.4 gi|385804500|ref|YP_005840900.1| - 2.1 8.1 16.3 6.6 6.5 5.3 3.0 2 1 1 3 3 3 0 Axonemal dynein light chain DUF342 PF03961.8 gi|385804500|ref|YP_005840900.1| - 2.2 6.5 7.8 0.3 9.4 2.6 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF342) DUF4407 PF14362.1 gi|385804500|ref|YP_005840900.1| - 2.5 6.9 9.4 1.8 7.4 4.7 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) CENP-F_leu_zip PF10473.4 gi|385804500|ref|YP_005840900.1| - 2.9 7.7 19.0 1.5 8.6 4.6 2.9 2 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TSC22 PF01166.13 gi|385804500|ref|YP_005840900.1| - 4.3 7.3 9.0 9.7 6.2 1.5 2.6 2 0 0 2 2 2 0 TSC-22/dip/bun family APG6 PF04111.7 gi|385804500|ref|YP_005840900.1| - 6.5 5.6 13.4 0.74 8.7 6.2 1.6 2 0 0 2 2 2 0 Autophagy protein Apg6 FadA PF09403.5 gi|385804500|ref|YP_005840900.1| - 7.8 6.5 12.8 8.8 6.3 7.0 2.1 2 0 0 2 2 2 0 Adhesion protein FadA PspA_IM30 PF04012.7 gi|385804502|ref|YP_005840902.1| - 3.2e-33 114.9 31.9 3.2e-33 114.9 22.1 1.4 2 0 0 2 2 2 1 PspA/IM30 family MAD PF05557.8 gi|385804502|ref|YP_005840902.1| - 0.00074 17.7 26.0 0.0012 17.0 18.0 1.3 1 0 0 1 1 1 1 Mitotic checkpoint protein Snf7 PF03357.16 gi|385804502|ref|YP_005840902.1| - 0.0023 17.3 16.8 0.0023 17.3 11.6 3.3 1 1 2 3 3 3 2 Snf7 Spc7 PF08317.6 gi|385804502|ref|YP_005840902.1| - 0.0027 16.4 23.6 0.0027 16.4 16.3 2.2 1 1 1 2 2 2 1 Spc7 kinetochore protein ERM PF00769.14 gi|385804502|ref|YP_005840902.1| - 0.003 17.1 38.7 0.003 17.1 26.8 1.6 1 1 1 2 2 2 1 Ezrin/radixin/moesin family DUF4200 PF13863.1 gi|385804502|ref|YP_005840902.1| - 0.042 13.8 35.9 0.26 11.2 3.7 3.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4200) AAA_13 PF13166.1 gi|385804502|ref|YP_005840902.1| - 0.044 12.2 24.1 0.021 13.3 15.0 1.6 1 1 0 1 1 1 0 AAA domain WXG100 PF06013.7 gi|385804502|ref|YP_005840902.1| - 0.055 13.4 18.6 0.3 11.1 3.5 3.0 2 1 1 3 3 3 0 Proteins of 100 residues with WXG DUF972 PF06156.8 gi|385804502|ref|YP_005840902.1| - 0.11 12.9 29.3 0.41 11.0 6.7 3.6 1 1 2 3 3 3 0 Protein of unknown function (DUF972) STAT_alpha PF01017.15 gi|385804502|ref|YP_005840902.1| - 0.12 12.1 19.2 0.72 9.5 2.2 3.1 1 1 1 3 3 3 0 STAT protein, all-alpha domain DUF3584 PF12128.3 gi|385804502|ref|YP_005840902.1| - 0.18 9.0 33.4 0.09 10.1 21.9 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) IncA PF04156.9 gi|385804502|ref|YP_005840902.1| - 0.24 10.9 33.9 1.4 8.5 4.9 3.1 1 1 2 3 3 3 0 IncA protein DUF3810 PF12725.2 gi|385804502|ref|YP_005840902.1| - 0.37 9.6 14.0 0.022 13.6 2.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3810) TBPIP PF07106.8 gi|385804502|ref|YP_005840902.1| - 0.48 9.9 28.7 0.96 8.9 4.7 3.3 1 1 2 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Baculo_PEP_C PF04513.7 gi|385804502|ref|YP_005840902.1| - 0.56 10.0 9.1 13 5.6 0.1 3.3 1 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF3450 PF11932.3 gi|385804502|ref|YP_005840902.1| - 0.72 9.0 26.2 2.1 7.5 7.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) DUF948 PF06103.6 gi|385804502|ref|YP_005840902.1| - 0.9 9.4 14.7 11 5.9 1.8 4.2 2 1 1 4 4 4 0 Bacterial protein of unknown function (DUF948) Snapin_Pallidin PF14712.1 gi|385804502|ref|YP_005840902.1| - 1.4 9.2 17.8 0.16 12.3 3.3 2.9 1 1 1 2 2 2 0 Snapin/Pallidin Dor1 PF04124.7 gi|385804502|ref|YP_005840902.1| - 1.6 7.1 16.6 2.4 6.5 9.8 2.0 1 1 1 2 2 2 0 Dor1-like family ATG_C PF09333.6 gi|385804502|ref|YP_005840902.1| - 2.7 8.2 8.9 2.6 8.2 0.2 3.1 1 1 2 3 3 3 0 ATG C terminal domain DUF342 PF03961.8 gi|385804502|ref|YP_005840902.1| - 2.7 6.2 22.8 2.4 6.4 10.9 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF342) FlaC_arch PF05377.6 gi|385804502|ref|YP_005840902.1| - 3.1 7.7 21.3 4.4 7.2 1.6 5.3 5 1 1 6 6 6 0 Flagella accessory protein C (FlaC) TPR_MLP1_2 PF07926.7 gi|385804502|ref|YP_005840902.1| - 4.5 7.0 39.2 3.4 7.4 18.0 3.5 1 1 3 4 4 4 0 TPR/MLP1/MLP2-like protein YlqD PF11068.3 gi|385804502|ref|YP_005840902.1| - 5.1 7.1 29.7 1.2 9.1 11.1 3.1 2 1 1 3 3 3 0 YlqD protein Bacillus_HBL PF05791.6 gi|385804502|ref|YP_005840902.1| - 6.9 5.9 15.7 5.4 6.3 1.4 2.5 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) V_ATPase_I PF01496.14 gi|385804502|ref|YP_005840902.1| - 7.4 4.2 24.7 14 3.3 15.5 2.2 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Abhydrolase_5 PF12695.2 gi|385804503|ref|YP_005840903.1| - 2.6e-09 36.9 0.0 3.7e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|385804503|ref|YP_005840903.1| - 7.2e-07 29.3 0.1 0.029 14.2 0.0 2.2 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|385804503|ref|YP_005840903.1| - 1.2e-06 27.9 0.0 1.6e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family BAAT_C PF08840.6 gi|385804503|ref|YP_005840903.1| - 0.0054 16.4 0.0 0.012 15.3 0.0 1.5 1 1 1 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal Thioesterase PF00975.15 gi|385804503|ref|YP_005840903.1| - 0.014 15.5 0.2 0.12 12.5 0.1 2.0 2 0 0 2 2 2 0 Thioesterase domain Abhydrolase_2 PF02230.11 gi|385804503|ref|YP_005840903.1| - 0.021 14.2 0.0 0.036 13.4 0.0 1.4 1 0 0 1 1 1 0 Phospholipase/Carboxylesterase Peptidase_S15 PF02129.13 gi|385804503|ref|YP_005840903.1| - 0.032 13.6 0.1 0.047 13.1 0.0 1.2 1 0 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) FSH1 PF03959.8 gi|385804503|ref|YP_005840903.1| - 0.035 13.5 0.1 0.17 11.3 0.1 2.0 1 1 0 1 1 1 0 Serine hydrolase (FSH1) DUF3209 PF11483.3 gi|385804504|ref|YP_005840904.1| - 9.6e-63 209.9 4.1 1.1e-62 209.8 2.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3209) HWE_HK PF07536.9 gi|385804504|ref|YP_005840904.1| - 0.012 16.0 0.7 0.45 10.9 0.1 2.5 1 1 1 2 2 2 0 HWE histidine kinase Syntaxin-6_N PF09177.6 gi|385804504|ref|YP_005840904.1| - 0.12 12.8 0.1 0.19 12.1 0.1 1.5 1 1 0 1 1 1 0 Syntaxin 6, N-terminal CbiX PF01903.12 gi|385804505|ref|YP_005840905.1| - 8.5e-43 144.7 0.0 8.5e-22 77.2 0.1 2.4 2 0 0 2 2 2 2 CbiX 2Fe-2S_thioredx PF01257.14 gi|385804505|ref|YP_005840905.1| - 7.2e-09 35.3 0.2 1.3e-08 34.5 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin CbiK PF06180.6 gi|385804505|ref|YP_005840905.1| - 5.7e-05 22.3 0.0 0.23 10.4 0.0 2.1 1 1 1 2 2 2 2 Cobalt chelatase (CbiK) Suc_Fer-like PF06999.7 gi|385804505|ref|YP_005840905.1| - 0.054 13.4 0.0 0.21 11.5 0.0 2.0 2 0 0 2 2 2 0 Sucrase/ferredoxin-like DUF1636 PF07845.6 gi|385804505|ref|YP_005840905.1| - 0.065 13.4 0.5 0.31 11.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1636) Guanylin PF02058.10 gi|385804505|ref|YP_005840905.1| - 0.12 12.4 0.3 0.25 11.4 0.2 1.6 1 0 0 1 1 1 0 Guanylin precursor LAGLIDADG_3 PF14528.1 gi|385804506|ref|YP_005840906.1| - 0.075 13.2 0.0 2.1 8.6 0.0 2.7 3 0 0 3 3 3 0 LAGLIDADG-like domain TP_methylase PF00590.15 gi|385804507|ref|YP_005840907.1| - 4.9e-36 124.4 0.2 6.3e-36 124.0 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF236 PF03057.9 gi|385804507|ref|YP_005840907.1| - 0.073 13.0 2.2 0.13 12.2 0.0 2.1 1 1 0 2 2 2 0 Protein of unknown function TP_methylase PF00590.15 gi|385804508|ref|YP_005840908.1| - 1.8e-41 142.1 0.1 2.4e-41 141.7 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.3 gi|385804509|ref|YP_005840909.1| - 2.7e-20 71.8 0.0 4.5e-19 67.9 0.0 2.7 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal Asparaginase_2 PF01112.13 gi|385804510|ref|YP_005840910.1| - 3.8e-39 134.2 11.2 8.2e-39 133.1 7.8 1.5 1 1 0 1 1 1 1 Asparaginase Usp PF00582.21 gi|385804513|ref|YP_005840913.1| - 8e-16 58.4 0.0 1.2e-15 57.9 0.0 1.2 1 0 0 1 1 1 1 Universal stress protein family UPF0118 PF01594.11 gi|385804514|ref|YP_005840914.1| - 1.2e-24 86.8 30.2 1.6e-24 86.5 20.9 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF20 MobB PF03205.9 gi|385804516|ref|YP_005840916.1| - 8.6e-21 74.1 0.0 1.1e-20 73.7 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|385804516|ref|YP_005840916.1| - 0.0002 21.4 0.0 0.00038 20.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|385804516|ref|YP_005840916.1| - 0.0031 18.3 0.0 0.0089 16.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|385804516|ref|YP_005840916.1| - 0.004 16.6 0.0 0.06 12.8 0.0 2.2 2 1 0 2 2 2 1 FtsK/SpoIIIE family MMR_HSR1 PF01926.18 gi|385804516|ref|YP_005840916.1| - 0.0052 16.7 0.0 0.0073 16.2 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase Arch_ATPase PF01637.13 gi|385804516|ref|YP_005840916.1| - 0.006 16.2 0.0 0.0088 15.7 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_26 PF13500.1 gi|385804516|ref|YP_005840916.1| - 0.0071 15.9 0.0 0.0098 15.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|385804516|ref|YP_005840916.1| - 0.0097 16.2 0.0 0.011 15.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter PPV_E1_C PF00519.12 gi|385804516|ref|YP_005840916.1| - 0.011 14.3 0.0 0.015 13.9 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus helicase AAA_16 PF13191.1 gi|385804516|ref|YP_005840916.1| - 0.012 15.6 0.0 0.024 14.6 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain ATP_bind_1 PF03029.12 gi|385804516|ref|YP_005840916.1| - 0.013 15.0 0.1 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_33 PF13671.1 gi|385804516|ref|YP_005840916.1| - 0.013 15.3 0.1 0.038 13.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|385804516|ref|YP_005840916.1| - 0.022 14.6 0.0 0.033 14.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain GTP_EFTU PF00009.22 gi|385804516|ref|YP_005840916.1| - 0.025 13.9 0.1 0.032 13.6 0.1 1.4 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain AAA_21 PF13304.1 gi|385804516|ref|YP_005840916.1| - 0.026 14.4 0.0 0.031 14.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain Pox_A32 PF04665.7 gi|385804516|ref|YP_005840916.1| - 0.034 13.4 0.0 0.18 11.0 0.0 1.8 2 0 0 2 2 2 0 Poxvirus A32 protein RNA_helicase PF00910.17 gi|385804516|ref|YP_005840916.1| - 0.04 14.0 0.0 0.053 13.6 0.0 1.4 1 1 0 1 1 1 0 RNA helicase Dynamin_N PF00350.18 gi|385804516|ref|YP_005840916.1| - 0.043 13.6 0.1 0.11 12.2 0.0 1.6 1 1 0 2 2 2 0 Dynamin family AAA_29 PF13555.1 gi|385804516|ref|YP_005840916.1| - 0.048 13.2 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF463 PF04317.7 gi|385804516|ref|YP_005840916.1| - 0.053 12.0 0.0 0.079 11.5 0.0 1.2 1 0 0 1 1 1 0 YcjX-like family, DUF463 SRPRB PF09439.5 gi|385804516|ref|YP_005840916.1| - 0.058 12.6 0.0 0.074 12.2 0.0 1.4 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit T2SE PF00437.15 gi|385804516|ref|YP_005840916.1| - 0.065 12.1 0.0 0.1 11.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Miro PF08477.8 gi|385804516|ref|YP_005840916.1| - 0.073 13.5 0.0 0.1 13.0 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein NACHT PF05729.7 gi|385804516|ref|YP_005840916.1| - 0.078 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_23 PF13476.1 gi|385804516|ref|YP_005840916.1| - 0.091 13.0 0.0 0.11 12.7 0.0 1.2 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|385804516|ref|YP_005840916.1| - 0.099 12.0 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRP1_TIP1 PF00660.12 gi|385804516|ref|YP_005840916.1| - 0.14 11.9 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 Seripauperin and TIP1 family Septin PF00735.13 gi|385804516|ref|YP_005840916.1| - 0.14 11.0 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Septin MarR_2 PF12802.2 gi|385804517|ref|YP_005840917.1| - 0.0026 17.3 0.1 0.0079 15.8 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|385804517|ref|YP_005840917.1| - 0.022 14.3 0.2 0.086 12.4 0.0 2.1 2 0 0 2 2 2 0 IclR helix-turn-helix domain HemN_C PF06969.11 gi|385804517|ref|YP_005840917.1| - 0.024 14.6 0.1 1.5 8.9 0.0 2.5 2 0 0 2 2 2 0 HemN C-terminal domain HTH_27 PF13463.1 gi|385804517|ref|YP_005840917.1| - 0.094 13.0 0.1 0.28 11.5 0.0 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF1724 PF08350.5 gi|385804517|ref|YP_005840917.1| - 0.095 12.2 0.0 0.19 11.3 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1724) HTH_24 PF13412.1 gi|385804517|ref|YP_005840917.1| - 0.11 11.9 0.0 0.29 10.5 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|385804517|ref|YP_005840917.1| - 0.14 11.8 0.0 0.34 10.6 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family EamA PF00892.15 gi|385804518|ref|YP_005840918.1| - 1.2e-35 122.2 34.6 4.3e-19 68.8 5.3 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|385804518|ref|YP_005840918.1| - 1.8e-07 31.3 5.7 1.8e-07 31.3 3.9 3.8 1 1 3 4 4 4 3 Multidrug resistance efflux transporter TPT PF03151.11 gi|385804518|ref|YP_005840918.1| - 0.063 12.9 21.1 0.14 11.7 1.5 2.7 2 1 0 2 2 2 0 Triose-phosphate Transporter family Gate PF07670.9 gi|385804519|ref|YP_005840919.1| - 1e-08 35.0 17.3 1.6e-05 24.7 2.1 2.7 2 1 0 2 2 2 2 Nucleoside recognition RNA_binding PF01877.12 gi|385804520|ref|YP_005840920.1| - 7e-26 90.5 0.6 9.8e-26 90.1 0.4 1.2 1 0 0 1 1 1 1 RNA binding Auxin_BP PF02041.11 gi|385804520|ref|YP_005840920.1| - 0.045 13.1 0.1 0.053 12.9 0.1 1.2 1 0 0 1 1 1 0 Auxin binding protein AAA_18 PF13238.1 gi|385804521|ref|YP_005840921.1| - 5.9e-12 46.0 0.1 8.6e-12 45.4 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|385804521|ref|YP_005840921.1| - 4.5e-10 40.3 0.2 7.3e-10 39.7 0.1 1.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|385804521|ref|YP_005840921.1| - 4.5e-08 33.0 0.0 6.8e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain SKI PF01202.17 gi|385804521|ref|YP_005840921.1| - 0.0022 17.9 0.1 0.0091 15.8 0.0 1.8 1 1 0 1 1 1 1 Shikimate kinase CoaE PF01121.15 gi|385804521|ref|YP_005840921.1| - 0.0028 17.1 0.2 1.4 8.2 0.0 2.2 2 0 0 2 2 2 2 Dephospho-CoA kinase Cytidylate_kin2 PF13189.1 gi|385804521|ref|YP_005840921.1| - 0.003 17.5 0.2 0.099 12.5 0.1 2.2 1 1 0 1 1 1 1 Cytidylate kinase-like family ADK PF00406.17 gi|385804521|ref|YP_005840921.1| - 0.029 14.2 0.1 0.058 13.2 0.1 1.7 1 1 0 1 1 1 0 Adenylate kinase PEP-utilizers PF00391.18 gi|385804521|ref|YP_005840921.1| - 0.062 12.8 0.2 0.16 11.5 0.2 1.8 1 1 0 1 1 1 0 PEP-utilising enzyme, mobile domain Cpn60_TCP1 PF00118.19 gi|385804522|ref|YP_005840922.1| - 3.6e-166 553.5 4.2 4.1e-166 553.3 2.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DICT PF10069.4 gi|385804523|ref|YP_005840923.1| - 1.8e-20 72.7 0.0 3e-20 72.0 0.0 1.3 1 0 0 1 1 1 1 Sensory domain found in DIguanylate Cyclases & Two-component systems PRAI PF00697.17 gi|385804523|ref|YP_005840923.1| - 0.14 11.6 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase KH_1 PF00013.24 gi|385804524|ref|YP_005840924.1| - 1.2e-16 60.1 4.6 8.7e-09 34.9 0.2 2.2 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|385804524|ref|YP_005840924.1| - 1.3e-08 34.2 1.2 0.00016 21.2 0.1 2.5 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|385804524|ref|YP_005840924.1| - 1e-05 25.0 2.3 0.0023 17.4 0.0 2.4 2 1 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|385804524|ref|YP_005840924.1| - 0.0053 16.3 0.7 2.7 7.6 0.3 2.8 2 1 0 2 2 2 2 KH domain CRCB PF02537.10 gi|385804525|ref|YP_005840925.1| - 3.4e-23 81.7 5.9 3.8e-23 81.5 4.1 1.0 1 0 0 1 1 1 1 CrcB-like protein DUF389 PF04087.9 gi|385804525|ref|YP_005840925.1| - 2.1 8.2 9.3 9.4 6.1 3.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF389) CRCB PF02537.10 gi|385804526|ref|YP_005840926.1| - 8.6e-19 67.5 17.3 1e-18 67.3 12.0 1.0 1 0 0 1 1 1 1 CrcB-like protein AAA_10 PF12846.2 gi|385804527|ref|YP_005840927.1| - 4.7e-17 62.3 0.1 3.4e-11 43.1 0.0 2.1 1 1 1 2 2 2 2 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|385804527|ref|YP_005840927.1| - 1.2e-07 31.4 0.0 6.2e-05 22.5 0.0 2.3 2 0 0 2 2 2 2 FtsK/SpoIIIE family DUF87 PF01935.12 gi|385804527|ref|YP_005840927.1| - 2.5e-06 27.5 0.0 5.4e-06 26.3 0.0 1.5 2 0 0 2 2 2 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|385804527|ref|YP_005840927.1| - 1.7e-05 23.3 0.1 0.00018 20.0 0.0 2.1 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.4 gi|385804527|ref|YP_005840927.1| - 0.00022 19.9 0.0 0.36 9.4 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain Zot PF05707.7 gi|385804527|ref|YP_005840927.1| - 0.039 13.4 0.1 0.18 11.2 0.0 2.0 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Helicase_RecD PF05127.9 gi|385804527|ref|YP_005840927.1| - 0.059 12.9 0.0 0.25 10.9 0.0 2.0 2 0 0 2 2 2 0 Helicase AAA_16 PF13191.1 gi|385804527|ref|YP_005840927.1| - 0.067 13.1 0.2 0.36 10.8 0.0 2.1 2 1 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|385804527|ref|YP_005840927.1| - 0.11 12.6 0.0 9.7 6.3 0.0 2.6 3 1 0 3 3 3 0 AAA domain CarboxypepD_reg PF13620.1 gi|385804528|ref|YP_005840928.1| - 0.00016 21.6 0.2 0.00027 20.9 0.1 1.5 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.11 gi|385804528|ref|YP_005840928.1| - 0.024 14.5 0.0 0.035 14.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) DUF2964 PF11177.3 gi|385804528|ref|YP_005840928.1| - 0.031 14.1 0.1 0.06 13.2 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2964) DUF1743 PF08489.6 gi|385804529|ref|YP_005840929.1| - 9.5e-35 118.9 0.0 1.6e-34 118.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.20 gi|385804529|ref|YP_005840929.1| - 0.0097 15.7 0.1 0.17 11.7 0.0 2.4 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.6 gi|385804529|ref|YP_005840929.1| - 0.06 13.0 1.5 0.14 11.8 1.1 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|385804529|ref|YP_005840929.1| - 0.11 12.2 0.4 0.21 11.3 0.3 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS1595 PF12760.2 gi|385804529|ref|YP_005840929.1| - 0.39 10.5 2.5 0.89 9.4 1.7 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-C2H2 PF00096.21 gi|385804529|ref|YP_005840929.1| - 1.5 9.2 3.9 11 6.5 0.5 2.7 2 0 0 2 2 2 0 Zinc finger, C2H2 type HTH_3 PF01381.17 gi|385804530|ref|YP_005840930.1| - 1.5e-10 40.7 0.0 2.8e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|385804530|ref|YP_005840930.1| - 1.1e-06 28.7 0.2 2.7e-06 27.4 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|385804530|ref|YP_005840930.1| - 1.2e-06 28.4 0.0 2.2e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|385804530|ref|YP_005840930.1| - 0.00014 21.3 0.2 0.00045 19.7 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_11 PF08279.7 gi|385804530|ref|YP_005840930.1| - 0.00049 19.6 0.0 0.0011 18.5 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_25 PF13413.1 gi|385804530|ref|YP_005840930.1| - 0.00076 19.0 0.1 0.0014 18.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|385804530|ref|YP_005840930.1| - 0.012 15.5 0.0 0.028 14.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|385804530|ref|YP_005840930.1| - 0.072 12.4 0.1 0.14 11.5 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_20 PF12840.2 gi|385804530|ref|YP_005840930.1| - 0.1 12.4 0.0 3.7 7.4 0.0 3.2 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_37 PF13744.1 gi|385804530|ref|YP_005840930.1| - 0.11 12.3 0.0 1.7 8.5 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|385804530|ref|YP_005840930.1| - 0.11 12.0 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_8 PF02954.14 gi|385804530|ref|YP_005840930.1| - 0.12 11.9 0.1 0.26 10.8 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family Glutaredoxin PF00462.19 gi|385804531|ref|YP_005840931.1| - 4e-12 45.9 0.0 5e-12 45.6 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.1 gi|385804531|ref|YP_005840931.1| - 2.6e-11 43.5 0.0 2.9e-11 43.4 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|385804531|ref|YP_005840931.1| - 3.8e-08 33.2 0.0 4.3e-08 33.0 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|385804531|ref|YP_005840931.1| - 0.0036 17.5 0.1 0.0049 17.0 0.1 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_3 PF13192.1 gi|385804531|ref|YP_005840931.1| - 0.073 12.9 0.1 0.14 11.9 0.1 1.5 1 1 0 1 1 1 0 Thioredoxin domain COX14 PF14880.1 gi|385804532|ref|YP_005840932.1| - 0.42 10.2 2.8 7.7 6.2 0.0 3.1 2 0 0 2 2 2 0 Cytochrome oxidase c assembly TRAM PF01938.15 gi|385804533|ref|YP_005840933.1| - 1.1e-10 41.1 1.5 2e-10 40.2 1.0 1.5 1 0 0 1 1 1 1 TRAM domain Macoilin PF09726.4 gi|385804533|ref|YP_005840933.1| - 0.95 7.6 4.3 1 7.5 3.0 1.0 1 0 0 1 1 1 0 Transmembrane protein PhnA_Zn_Ribbon PF08274.7 gi|385804534|ref|YP_005840934.1| - 0.00033 20.3 0.3 0.00043 20.0 0.2 1.2 1 0 0 1 1 1 1 PhnA Zinc-Ribbon FdhE PF04216.7 gi|385804534|ref|YP_005840934.1| - 0.014 15.0 0.3 0.016 14.9 0.2 1.2 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation DZR PF12773.2 gi|385804534|ref|YP_005840934.1| - 0.017 14.8 1.1 0.028 14.2 0.7 1.4 1 1 0 1 1 1 0 Double zinc ribbon DUF678 PF05077.7 gi|385804534|ref|YP_005840934.1| - 0.019 14.9 0.9 0.022 14.7 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF678) HypA PF01155.14 gi|385804534|ref|YP_005840934.1| - 0.025 14.2 0.4 0.029 14.0 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Orbi_NS1 PF01718.11 gi|385804534|ref|YP_005840934.1| - 0.03 12.3 0.7 0.031 12.3 0.5 1.0 1 0 0 1 1 1 0 Orbivirus non-structural protein NS1, or hydrophobic tubular protein DUF4428 PF14471.1 gi|385804534|ref|YP_005840934.1| - 0.032 13.9 0.9 0.58 9.9 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4428) DUF2296 PF10058.4 gi|385804534|ref|YP_005840934.1| - 0.034 13.9 2.2 0.75 9.5 1.5 2.1 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) Elf1 PF05129.8 gi|385804534|ref|YP_005840934.1| - 0.037 13.7 2.5 0.047 13.3 0.1 1.9 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like Zn-ribbon_8 PF09723.5 gi|385804534|ref|YP_005840934.1| - 0.041 13.8 1.9 0.52 10.3 1.3 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zf-Di19 PF05605.7 gi|385804534|ref|YP_005840934.1| - 0.043 13.9 1.4 0.16 12.1 0.2 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-Sec23_Sec24 PF04810.10 gi|385804534|ref|YP_005840934.1| - 0.049 13.1 0.3 0.35 10.4 0.0 2.0 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Zn_Tnp_IS1595 PF12760.2 gi|385804534|ref|YP_005840934.1| - 0.051 13.3 1.6 0.44 10.3 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|385804534|ref|YP_005840934.1| - 0.062 13.1 0.9 1.8 8.4 0.1 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG TF_Zn_Ribbon PF08271.7 gi|385804534|ref|YP_005840934.1| - 0.09 12.1 1.3 0.3 10.4 0.1 2.0 2 0 0 2 2 2 0 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|385804534|ref|YP_005840934.1| - 0.13 11.7 0.5 2 7.9 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-RING_5 PF14634.1 gi|385804534|ref|YP_005840934.1| - 0.19 11.4 3.2 0.38 10.5 2.2 1.4 1 1 0 1 1 1 0 zinc-RING finger domain zf-RING_3 PF14369.1 gi|385804534|ref|YP_005840934.1| - 0.2 11.7 2.0 1.1 9.2 1.4 2.0 1 1 0 1 1 1 0 zinc-finger Lar_restr_allev PF14354.1 gi|385804534|ref|YP_005840934.1| - 0.29 11.4 4.0 0.91 9.8 0.3 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar NOB1_Zn_bind PF08772.6 gi|385804534|ref|YP_005840934.1| - 0.32 10.8 3.3 3.6 7.4 2.3 2.1 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Ogr_Delta PF04606.7 gi|385804534|ref|YP_005840934.1| - 0.38 10.4 3.1 8.1 6.1 0.1 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger GFA PF04828.9 gi|385804534|ref|YP_005840934.1| - 0.39 10.7 2.3 2.4 8.1 1.6 1.9 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme zf-C3HC4_4 PF15227.1 gi|385804534|ref|YP_005840934.1| - 0.76 9.6 3.7 23 4.9 2.6 2.1 1 1 0 1 1 1 0 zinc finger of C3HC4-type, RING PfkB PF00294.19 gi|385804535|ref|YP_005840935.1| - 2.6e-61 207.3 0.0 3e-61 207.1 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HTH_24 PF13412.1 gi|385804536|ref|YP_005840936.1| - 2.1e-15 55.7 0.1 3.3e-15 55.2 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|385804536|ref|YP_005840936.1| - 5.4e-12 45.0 0.2 5.4e-12 45.0 0.1 1.7 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|385804536|ref|YP_005840936.1| - 6.8e-07 28.8 0.0 1.3e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|385804536|ref|YP_005840936.1| - 1e-06 28.2 0.0 1.9e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|385804536|ref|YP_005840936.1| - 1.7e-06 27.7 0.0 3e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|385804536|ref|YP_005840936.1| - 3.7e-05 23.2 0.0 6.8e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|385804536|ref|YP_005840936.1| - 4e-05 23.2 0.0 7e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|385804536|ref|YP_005840936.1| - 5.3e-05 22.7 0.0 9.2e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|385804536|ref|YP_005840936.1| - 0.00022 21.1 0.0 0.00047 20.0 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.1 gi|385804536|ref|YP_005840936.1| - 0.00033 20.5 0.1 0.00061 19.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|385804536|ref|YP_005840936.1| - 0.0005 19.5 0.0 0.00085 18.8 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_38 PF13936.1 gi|385804536|ref|YP_005840936.1| - 0.00081 18.8 0.0 0.0014 18.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|385804536|ref|YP_005840936.1| - 0.0011 19.1 0.0 0.0023 18.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|385804536|ref|YP_005840936.1| - 0.0015 18.0 0.0 0.004 16.7 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|385804536|ref|YP_005840936.1| - 0.002 17.5 0.0 0.0034 16.8 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 LexA_DNA_bind PF01726.11 gi|385804536|ref|YP_005840936.1| - 0.0029 17.1 0.0 0.0057 16.1 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain Rrf2 PF02082.15 gi|385804536|ref|YP_005840936.1| - 0.0051 16.9 0.0 0.009 16.1 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator GerE PF00196.14 gi|385804536|ref|YP_005840936.1| - 0.0075 15.5 0.0 0.017 14.4 0.0 1.5 2 0 0 2 2 1 1 Bacterial regulatory proteins, luxR family FaeA PF04703.7 gi|385804536|ref|YP_005840936.1| - 0.0083 16.2 0.0 0.014 15.5 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein Sigma70_r4 PF04545.11 gi|385804536|ref|YP_005840936.1| - 0.011 15.0 0.0 0.017 14.4 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 RPA_C PF08784.6 gi|385804536|ref|YP_005840936.1| - 0.012 16.0 0.0 0.035 14.5 0.0 1.7 2 0 0 2 2 2 0 Replication protein A C terminal MarR PF01047.17 gi|385804536|ref|YP_005840936.1| - 0.014 15.0 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_3 PF01381.17 gi|385804536|ref|YP_005840936.1| - 0.018 14.9 0.0 0.12 12.1 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix HrcA_DNA-bdg PF03444.10 gi|385804536|ref|YP_005840936.1| - 0.02 14.3 0.0 0.034 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding EAP30 PF04157.11 gi|385804536|ref|YP_005840936.1| - 0.021 13.9 0.0 0.037 13.1 0.0 1.4 1 0 0 1 1 1 0 EAP30/Vps36 family GntR PF00392.16 gi|385804536|ref|YP_005840936.1| - 0.029 13.8 0.0 0.052 12.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Put_DNA-bind_N PF06971.8 gi|385804536|ref|YP_005840936.1| - 0.029 14.1 0.0 0.062 13.0 0.0 1.6 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus TrmB PF01978.14 gi|385804536|ref|YP_005840936.1| - 0.031 13.9 0.0 0.055 13.1 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.1 gi|385804536|ref|YP_005840936.1| - 0.038 14.1 0.0 0.076 13.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Tnp_ISL3 PF13542.1 gi|385804536|ref|YP_005840936.1| - 0.047 12.8 0.0 0.081 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_Crp_2 PF13545.1 gi|385804536|ref|YP_005840936.1| - 0.051 13.3 0.0 0.098 12.4 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_12 PF08461.5 gi|385804536|ref|YP_005840936.1| - 0.058 13.1 0.4 0.16 11.7 0.0 1.9 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain Bac_rhodopsin PF01036.13 gi|385804537|ref|YP_005840937.1| - 4.6e-52 176.5 21.7 5.4e-52 176.3 15.0 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein DEAD PF00270.24 gi|385804538|ref|YP_005840938.1| - 2.9e-23 82.1 0.0 6.6e-23 81.0 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|385804538|ref|YP_005840938.1| - 2.3e-12 46.6 0.0 4.2e-12 45.7 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|385804538|ref|YP_005840938.1| - 3.3e-07 30.3 0.0 7.7e-07 29.1 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit CBS PF00571.23 gi|385804539|ref|YP_005840939.1| - 2e-27 94.6 4.4 3.3e-17 61.9 0.1 2.5 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|385804539|ref|YP_005840939.1| - 9.9e-20 70.3 13.8 6.5e-15 54.6 3.1 2.7 1 1 2 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|385804539|ref|YP_005840939.1| - 0.00012 21.5 3.7 0.00012 21.5 2.6 2.5 1 1 2 3 3 3 1 Peptidase M50B-like Peptidase_MA_2 PF13485.1 gi|385804539|ref|YP_005840939.1| - 0.052 13.6 0.0 0.094 12.7 0.0 1.4 1 0 0 1 1 1 0 Peptidase MA superfamily HAD_2 PF13419.1 gi|385804540|ref|YP_005840940.1| - 5e-22 78.9 0.0 5.7e-22 78.7 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|385804540|ref|YP_005840940.1| - 3.7e-12 47.1 1.8 2.2e-11 44.6 1.3 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|385804540|ref|YP_005840940.1| - 3.3e-08 33.1 0.4 7.6e-08 31.9 0.3 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like NurA PF09376.5 gi|385804541|ref|YP_005840941.1| - 4.3e-22 78.7 0.0 5.6e-22 78.4 0.0 1.2 1 0 0 1 1 1 1 NurA domain AMP-binding_C PF13193.1 gi|385804542|ref|YP_005840942.1| - 0.095 13.6 0.0 0.13 13.2 0.0 1.2 1 0 0 1 1 1 0 AMP-binding enzyme C-terminal domain AAA_10 PF12846.2 gi|385804543|ref|YP_005840943.1| - 7.6e-20 71.5 0.0 3.7e-19 69.3 0.0 2.0 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|385804543|ref|YP_005840943.1| - 1.2e-10 41.6 0.0 4.4e-10 39.7 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|385804543|ref|YP_005840943.1| - 6.5e-06 24.7 0.2 0.011 14.1 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|385804543|ref|YP_005840943.1| - 1.4e-05 24.6 0.0 0.0063 16.0 0.0 2.5 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA_19 PF13245.1 gi|385804543|ref|YP_005840943.1| - 0.0019 17.8 0.0 0.0058 16.3 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain TrwB_AAD_bind PF10412.4 gi|385804543|ref|YP_005840943.1| - 0.0061 15.2 0.0 0.026 13.1 0.0 1.8 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|385804543|ref|YP_005840943.1| - 0.016 15.3 0.0 0.094 12.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|385804543|ref|YP_005840943.1| - 0.019 13.9 0.0 0.039 12.8 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_16 PF13191.1 gi|385804543|ref|YP_005840943.1| - 0.031 14.2 0.0 0.27 11.2 0.0 2.3 1 1 0 1 1 1 0 AAA ATPase domain Zot PF05707.7 gi|385804543|ref|YP_005840943.1| - 0.035 13.5 0.0 0.92 8.9 0.0 2.2 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) DEAD PF00270.24 gi|385804543|ref|YP_005840943.1| - 0.067 12.6 0.0 0.46 9.9 0.0 2.2 1 1 0 1 1 1 0 DEAD/DEAH box helicase HTH_29 PF13551.1 gi|385804545|ref|YP_005840945.1| - 1.9e-15 56.9 0.1 1.3e-14 54.2 0.0 2.4 3 0 0 3 3 3 1 Winged helix-turn helix HTH_33 PF13592.1 gi|385804545|ref|YP_005840945.1| - 5.7e-13 48.2 0.0 2.8e-11 42.7 0.0 2.5 2 0 0 2 2 2 1 Winged helix-turn helix DDE_3 PF13358.1 gi|385804545|ref|YP_005840945.1| - 1.2e-12 47.8 0.0 2.4e-12 46.8 0.0 1.6 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_32 PF13565.1 gi|385804545|ref|YP_005840945.1| - 1.3e-11 45.1 9.2 2.6e-11 44.1 0.0 3.6 3 2 1 4 4 4 1 Homeodomain-like domain DDE_1 PF03184.14 gi|385804545|ref|YP_005840945.1| - 1.7e-05 24.1 0.0 2.9e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_23 PF13384.1 gi|385804545|ref|YP_005840945.1| - 1.8e-05 24.2 1.0 5.3e-05 22.7 0.1 2.3 3 0 0 3 3 3 1 Homeodomain-like domain HTH_28 PF13518.1 gi|385804545|ref|YP_005840945.1| - 5.4e-05 23.0 0.5 0.00026 20.8 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain rve PF00665.21 gi|385804545|ref|YP_005840945.1| - 0.00017 21.6 0.0 0.00036 20.6 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain HTH_7 PF02796.10 gi|385804545|ref|YP_005840945.1| - 0.001 18.9 0.0 0.0025 17.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Colicin_Pyocin PF01320.13 gi|385804545|ref|YP_005840945.1| - 0.45 10.4 2.2 10 6.1 0.1 3.0 3 0 0 3 3 3 0 Colicin immunity protein / pyocin immunity protein DUF552 PF04472.7 gi|385804546|ref|YP_005840946.1| - 7.3e-17 61.0 1.9 9.6e-17 60.6 1.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF552) ABC_tran PF00005.22 gi|385804547|ref|YP_005840947.1| - 4.2e-22 78.9 0.0 4.9e-12 46.3 0.0 4.3 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.14 gi|385804547|ref|YP_005840947.1| - 1.1e-12 47.6 0.0 0.028 13.6 0.0 4.2 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|385804547|ref|YP_005840947.1| - 4.5e-09 35.7 0.0 0.0012 18.3 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|385804547|ref|YP_005840947.1| - 3.7e-08 33.6 5.9 0.07 13.0 0.0 4.2 4 0 0 4 4 4 3 AAA domain AAA_25 PF13481.1 gi|385804547|ref|YP_005840947.1| - 1e-06 28.2 0.0 0.097 12.0 0.0 3.4 3 0 0 3 3 3 2 AAA domain DnaJ_CXXCXGXG PF00684.14 gi|385804547|ref|YP_005840947.1| - 1.9e-06 27.8 4.6 0.0049 16.8 0.7 3.4 3 0 0 3 3 3 1 DnaJ central domain AAA_22 PF13401.1 gi|385804547|ref|YP_005840947.1| - 1.9e-06 28.0 0.3 0.24 11.5 0.0 3.9 4 0 0 4 4 3 2 AAA domain AAA_16 PF13191.1 gi|385804547|ref|YP_005840947.1| - 1.7e-05 24.8 0.0 0.23 11.4 0.0 3.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|385804547|ref|YP_005840947.1| - 2.2e-05 24.0 0.8 0.0099 15.3 0.0 2.7 2 1 0 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|385804547|ref|YP_005840947.1| - 2.3e-05 23.6 0.0 0.15 11.2 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|385804547|ref|YP_005840947.1| - 4.7e-05 24.1 1.2 0.64 10.8 0.0 4.1 4 0 0 4 4 3 2 AAA domain KaiC PF06745.8 gi|385804547|ref|YP_005840947.1| - 7.3e-05 21.9 0.2 0.076 12.1 0.0 2.8 3 0 0 3 3 3 2 KaiC AAA_23 PF13476.1 gi|385804547|ref|YP_005840947.1| - 0.00027 21.3 0.3 0.33 11.2 0.2 2.9 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|385804547|ref|YP_005840947.1| - 0.00027 21.2 0.1 0.74 10.1 0.0 3.2 3 0 0 3 3 2 1 AAA domain AAA_14 PF13173.1 gi|385804547|ref|YP_005840947.1| - 0.00032 20.6 0.0 0.39 10.6 0.0 3.2 3 0 0 3 3 3 1 AAA domain AAA_33 PF13671.1 gi|385804547|ref|YP_005840947.1| - 0.00095 19.0 0.0 1.8 8.4 0.0 3.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|385804547|ref|YP_005840947.1| - 0.0037 16.3 0.0 1.9 7.4 0.0 2.9 3 0 0 3 3 3 1 AAA ATPase domain APS_kinase PF01583.15 gi|385804547|ref|YP_005840947.1| - 0.0061 16.2 0.1 3.7 7.2 0.0 2.7 2 0 0 2 2 2 1 Adenylylsulphate kinase DUF2075 PF09848.4 gi|385804547|ref|YP_005840947.1| - 0.0063 15.5 0.1 2.1 7.2 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.13 gi|385804547|ref|YP_005840947.1| - 0.01 15.3 0.0 0.42 10.1 0.0 2.5 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase NACHT PF05729.7 gi|385804547|ref|YP_005840947.1| - 0.011 15.4 0.0 0.41 10.2 0.0 2.3 2 0 0 2 2 2 0 NACHT domain Arch_ATPase PF01637.13 gi|385804547|ref|YP_005840947.1| - 0.012 15.2 0.0 6.3 6.4 0.0 2.8 3 0 0 3 3 2 0 Archaeal ATPase MobB PF03205.9 gi|385804547|ref|YP_005840947.1| - 0.018 14.7 0.1 0.78 9.4 0.0 2.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|385804547|ref|YP_005840947.1| - 0.021 14.2 0.1 1.3 8.4 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.18 gi|385804547|ref|YP_005840947.1| - 0.029 14.3 0.2 2.4 8.1 0.0 3.5 4 0 0 4 4 4 0 50S ribosome-binding GTPase DUF3006 PF11213.3 gi|385804547|ref|YP_005840947.1| - 0.039 13.6 0.6 0.15 11.7 0.4 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3006) AAA_19 PF13245.1 gi|385804547|ref|YP_005840947.1| - 0.041 13.6 0.1 12 5.7 0.0 2.7 2 0 0 2 2 2 0 Part of AAA domain FtsK_SpoIIIE PF01580.13 gi|385804547|ref|YP_005840947.1| - 0.058 12.8 0.1 0.75 9.2 0.0 2.5 3 0 0 3 3 3 0 FtsK/SpoIIIE family RNA_helicase PF00910.17 gi|385804547|ref|YP_005840947.1| - 0.11 12.7 0.0 3.6 7.8 0.0 2.4 2 0 0 2 2 2 0 RNA helicase Miro PF08477.8 gi|385804547|ref|YP_005840947.1| - 0.13 12.7 0.6 27 5.2 0.0 3.2 3 0 0 3 3 2 0 Miro-like protein zf-RING_3 PF14369.1 gi|385804547|ref|YP_005840947.1| - 0.16 11.9 0.4 12 5.9 0.0 2.7 2 0 0 2 2 2 0 zinc-finger Zn-ribbon_8 PF09723.5 gi|385804547|ref|YP_005840947.1| - 0.36 10.8 6.0 6.2 6.8 0.1 3.4 3 0 0 3 3 3 0 Zinc ribbon domain GTP_EFTU PF00009.22 gi|385804550|ref|YP_005840950.1| - 2.3e-30 105.4 0.0 1.3e-29 102.9 0.0 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|385804550|ref|YP_005840950.1| - 8.7e-23 80.2 1.3 2.3e-22 78.9 0.9 1.7 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|385804550|ref|YP_005840950.1| - 2.5e-12 46.7 5.4 1.4e-09 37.9 0.0 3.0 3 0 0 3 3 3 2 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|385804550|ref|YP_005840950.1| - 7.8e-11 41.4 0.1 2.6e-10 39.7 0.0 2.0 2 0 0 2 2 2 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|385804550|ref|YP_005840950.1| - 9.3e-06 25.5 0.0 2.5e-05 24.1 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|385804550|ref|YP_005840950.1| - 0.0051 16.3 0.0 0.02 14.4 0.0 2.0 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.18 gi|385804550|ref|YP_005840950.1| - 0.017 14.9 0.2 1.2 8.9 0.0 2.4 1 1 0 2 2 2 0 Dynamin family MobB PF03205.9 gi|385804550|ref|YP_005840950.1| - 0.026 14.2 0.5 0.071 12.8 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|385804550|ref|YP_005840950.1| - 0.063 13.7 0.0 0.14 12.6 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein PRC PF05239.11 gi|385804551|ref|YP_005840951.1| - 2.3e-08 33.7 0.0 3.1e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 PRC-barrel domain MraZ PF02381.13 gi|385804551|ref|YP_005840951.1| - 0.08 12.6 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 MraZ protein NOB1_Zn_bind PF08772.6 gi|385804552|ref|YP_005840952.1| - 0.00017 21.3 0.5 0.0003 20.5 0.4 1.4 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like UPF0278 PF08745.6 gi|385804552|ref|YP_005840952.1| - 0.00088 18.5 0.2 0.0011 18.2 0.1 1.3 1 0 0 1 1 1 1 UPF0278 family zf-C3HC4_3 PF13920.1 gi|385804552|ref|YP_005840952.1| - 0.0057 16.3 0.7 0.0079 15.8 0.5 1.2 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) Zn-ribbon_8 PF09723.5 gi|385804552|ref|YP_005840952.1| - 0.0074 16.2 5.6 0.15 12.0 3.9 2.2 1 1 0 1 1 1 1 Zinc ribbon domain Mut7-C PF01927.11 gi|385804552|ref|YP_005840952.1| - 0.0077 16.2 0.1 0.0098 15.8 0.1 1.2 1 0 0 1 1 1 1 Mut7-C RNAse domain Rad50_zn_hook PF04423.9 gi|385804552|ref|YP_005840952.1| - 0.0085 15.5 4.0 0.25 10.8 0.3 2.5 1 1 1 2 2 2 2 Rad50 zinc hook motif DZR PF12773.2 gi|385804552|ref|YP_005840952.1| - 0.0087 15.8 1.1 0.014 15.1 0.8 1.3 1 0 0 1 1 1 1 Double zinc ribbon DUF4411 PF14367.1 gi|385804552|ref|YP_005840952.1| - 0.016 14.8 0.5 0.21 11.2 0.2 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4411) DNA_ligase_ZBD PF03119.11 gi|385804552|ref|YP_005840952.1| - 0.023 14.3 0.3 0.023 14.3 0.2 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain SprT-like PF10263.4 gi|385804552|ref|YP_005840952.1| - 0.03 13.9 0.0 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 SprT-like family PIN PF01850.16 gi|385804552|ref|YP_005840952.1| - 0.03 14.6 2.0 0.11 12.8 0.6 2.0 1 1 1 2 2 2 0 PIN domain zinc-ribbons_6 PF07191.7 gi|385804552|ref|YP_005840952.1| - 0.065 13.0 0.4 0.12 12.2 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbons zf-C2H2 PF00096.21 gi|385804552|ref|YP_005840952.1| - 0.087 13.2 1.5 1.7 9.1 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-ribbon_3 PF13248.1 gi|385804552|ref|YP_005840952.1| - 0.14 11.4 1.7 0.24 10.6 1.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zf-C2HC_2 PF13913.1 gi|385804552|ref|YP_005840952.1| - 0.21 11.2 8.8 0.16 11.6 0.8 2.3 1 1 1 2 2 2 0 zinc-finger of a C2HC-type HypA PF01155.14 gi|385804552|ref|YP_005840952.1| - 0.25 11.0 2.9 0.41 10.3 1.9 1.7 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C2H2_4 PF13894.1 gi|385804552|ref|YP_005840952.1| - 0.3 11.5 2.0 18 5.9 0.1 2.4 1 1 1 2 2 2 0 C2H2-type zinc finger DNA_RNApol_7kD PF03604.8 gi|385804552|ref|YP_005840952.1| - 0.72 9.3 3.8 1.6 8.3 2.6 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|385804552|ref|YP_005840952.1| - 1.7 8.2 6.1 0.92 9.0 2.4 1.9 2 1 0 2 2 2 0 zinc-ribbon domain Abi PF02517.11 gi|385804553|ref|YP_005840953.1| - 2.1e-16 59.8 5.0 2.1e-16 59.8 3.4 2.5 2 1 0 2 2 2 1 CAAX protease self-immunity TctB PF07331.6 gi|385804553|ref|YP_005840953.1| - 6.5 6.4 27.4 0.16 11.6 10.3 3.0 1 1 1 2 2 2 0 Tripartite tricarboxylate transporter TctB family AzlD PF05437.7 gi|385804554|ref|YP_005840954.1| - 2.9e-23 81.6 7.9 3.3e-23 81.4 5.5 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) DUF2516 PF10724.4 gi|385804554|ref|YP_005840954.1| - 0.26 11.2 0.3 0.26 11.2 0.2 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF2516) AzlC PF03591.9 gi|385804555|ref|YP_005840955.1| - 3.1e-42 143.9 5.6 3.1e-42 143.9 3.9 1.9 2 1 0 2 2 2 1 AzlC protein FixQ PF05545.6 gi|385804556|ref|YP_005840956.1| - 0.031 13.9 0.8 0.046 13.3 0.6 1.3 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ UPF0552 PF10574.4 gi|385804556|ref|YP_005840956.1| - 1.3 8.4 5.6 1.5 8.2 3.9 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0552 Abi PF02517.11 gi|385804557|ref|YP_005840957.1| - 1.6e-15 56.9 2.2 1.6e-15 56.9 1.5 2.7 2 1 0 2 2 2 1 CAAX protease self-immunity NUDIX PF00293.23 gi|385804558|ref|YP_005840958.1| - 1.2e-12 47.5 0.1 1.7e-12 47.1 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain Arylsulfotran_2 PF14269.1 gi|385804559|ref|YP_005840959.1| - 0.00035 19.8 1.2 0.014 14.6 0.7 2.5 1 1 0 1 1 1 1 Arylsulfotransferase (ASST) Arylsulfotrans PF05935.6 gi|385804559|ref|YP_005840959.1| - 0.00064 18.3 3.0 0.0014 17.1 0.3 2.2 1 1 0 2 2 2 1 Arylsulfotransferase (ASST) NHL PF01436.16 gi|385804559|ref|YP_005840959.1| - 0.3 11.1 6.8 0.41 10.6 0.1 4.2 4 0 0 4 4 4 0 NHL repeat PQQ_3 PF13570.1 gi|385804559|ref|YP_005840959.1| - 0.58 10.5 3.5 2.9 8.2 0.6 3.3 3 0 0 3 3 3 0 PQQ-like domain Glyoxalase_2 PF12681.2 gi|385804560|ref|YP_005840960.1| - 5.7e-07 30.1 0.0 7.1e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|385804560|ref|YP_005840960.1| - 0.0037 17.2 0.2 0.0095 15.9 0.1 1.7 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DUF457 PF04307.9 gi|385804561|ref|YP_005840961.1| - 4.2e-12 45.6 28.5 9.1e-11 41.3 17.7 2.7 2 1 0 2 2 2 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) zf-CHY PF05495.7 gi|385804562|ref|YP_005840962.1| - 3.9e-12 46.1 1.5 3.1e-05 24.0 0.2 2.4 1 1 0 2 2 2 2 CHY zinc finger zf-RING_3 PF14369.1 gi|385804562|ref|YP_005840962.1| - 0.0023 17.8 4.5 0.045 13.7 0.1 3.1 2 2 0 2 2 2 2 zinc-finger DZR PF12773.2 gi|385804562|ref|YP_005840962.1| - 0.87 9.4 7.4 1.7 8.5 3.0 3.0 2 1 0 2 2 2 0 Double zinc ribbon Lar_restr_allev PF14354.1 gi|385804562|ref|YP_005840962.1| - 5.7 7.3 8.3 7.3 6.9 1.4 2.6 2 0 0 2 2 2 0 Restriction alleviation protein Lar ABC_transp_aux PF09822.4 gi|385804563|ref|YP_005840963.1| - 4.8e-07 29.5 0.0 6.3e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system Peptidase_S49 PF01343.13 gi|385804564|ref|YP_005840964.1| - 5e-17 62.1 3.8 1.4e-07 31.4 0.0 2.3 2 0 0 2 2 2 2 Peptidase family S49 CLP_protease PF00574.18 gi|385804564|ref|YP_005840964.1| - 0.0083 15.7 0.2 1.4 8.5 0.1 2.2 2 0 0 2 2 2 2 Clp protease DUF3068 PF11271.3 gi|385804564|ref|YP_005840964.1| - 0.039 12.9 0.2 0.066 12.2 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3068) ABC2_membrane PF01061.19 gi|385804565|ref|YP_005840965.1| - 4.7e-27 94.5 20.4 5.7e-27 94.2 14.2 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|385804565|ref|YP_005840965.1| - 1.5e-07 30.7 22.1 1.5e-07 30.7 15.3 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|385804565|ref|YP_005840965.1| - 1.3 8.3 18.1 2.5 7.3 12.6 1.7 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|385804566|ref|YP_005840966.1| - 3.1e-30 105.2 0.0 4.7e-30 104.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385804566|ref|YP_005840966.1| - 1.6e-16 61.0 0.3 1.6e-10 41.4 0.0 2.3 1 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|385804566|ref|YP_005840966.1| - 0.0029 17.0 0.0 0.0061 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA-like domain AAA_15 PF13175.1 gi|385804566|ref|YP_005840966.1| - 0.0045 16.1 0.0 0.18 10.8 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|385804566|ref|YP_005840966.1| - 0.0094 16.2 0.0 0.013 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|385804566|ref|YP_005840966.1| - 0.012 14.8 0.0 0.25 10.5 0.0 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.1 gi|385804566|ref|YP_005840966.1| - 0.028 13.9 0.0 0.075 12.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|385804566|ref|YP_005840966.1| - 0.038 13.1 0.1 0.18 10.9 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|385804566|ref|YP_005840966.1| - 0.042 13.3 0.3 0.085 12.4 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|385804566|ref|YP_005840966.1| - 0.054 12.8 0.1 0.19 11.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF4162 PF13732.1 gi|385804566|ref|YP_005840966.1| - 0.065 13.7 0.0 0.13 12.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_19 PF13245.1 gi|385804566|ref|YP_005840966.1| - 0.085 12.6 0.1 0.25 11.1 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|385804566|ref|YP_005840966.1| - 0.22 11.2 1.2 6.6 6.4 0.1 3.0 3 1 0 3 3 3 0 NTPase PEP_mutase PF13714.1 gi|385804567|ref|YP_005840967.1| - 2.3e-45 154.6 0.1 2.9e-45 154.3 0.1 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.16 gi|385804567|ref|YP_005840967.1| - 1.9e-37 128.7 2.0 1.1e-18 66.7 0.0 2.1 1 1 1 2 2 2 2 Isocitrate lyase family THUMP PF02926.12 gi|385804568|ref|YP_005840968.1| - 0.00042 20.2 0.0 0.0009 19.1 0.0 1.5 1 0 0 1 1 1 1 THUMP domain DnaJ_CXXCXGXG PF00684.14 gi|385804568|ref|YP_005840968.1| - 0.0016 18.4 1.1 0.0016 18.4 0.8 2.9 3 0 0 3 3 3 1 DnaJ central domain DUF1356 PF07092.7 gi|385804568|ref|YP_005840968.1| - 0.22 10.6 0.5 0.45 9.6 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1356) RNase_HII PF01351.13 gi|385804569|ref|YP_005840969.1| - 3.3e-33 115.0 0.0 8e-33 113.7 0.0 1.6 1 1 0 1 1 1 1 Ribonuclease HII SecD_SecF PF02355.11 gi|385804570|ref|YP_005840970.1| - 8.6e-17 60.9 5.7 1.9e-16 59.8 4.0 1.5 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.10 gi|385804570|ref|YP_005840970.1| - 0.00047 18.9 13.1 0.0014 17.3 9.1 1.8 1 0 0 1 1 1 1 MMPL family Sterol-sensing PF12349.3 gi|385804570|ref|YP_005840970.1| - 0.004 16.6 3.1 0.0089 15.4 1.8 1.8 2 0 0 2 2 2 1 Sterol-sensing domain of SREBP cleavage-activation Sec_GG PF07549.9 gi|385804570|ref|YP_005840970.1| - 0.011 14.9 0.0 0.16 11.2 0.0 2.9 2 0 0 2 2 2 0 SecD/SecF GG Motif SecD_SecF PF02355.11 gi|385804571|ref|YP_005840971.1| - 3.3e-31 107.9 16.0 3.3e-31 107.9 11.1 1.7 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.9 gi|385804571|ref|YP_005840971.1| - 0.00056 18.9 0.1 0.0017 17.4 0.1 1.9 1 0 0 1 1 1 1 SecD/SecF GG Motif Patched PF02460.13 gi|385804571|ref|YP_005840971.1| - 0.24 9.2 14.5 0.33 8.8 10.0 1.1 1 0 0 1 1 1 0 Patched family Peptidase_M50 PF02163.17 gi|385804573|ref|YP_005840973.1| - 0.0095 14.9 1.5 0.015 14.2 1.1 1.2 1 0 0 1 1 1 1 Peptidase family M50 MARVEL PF01284.18 gi|385804573|ref|YP_005840973.1| - 0.098 12.4 12.0 0.15 11.8 0.7 2.4 1 1 1 2 2 2 0 Membrane-associating domain DUF2781 PF10914.3 gi|385804573|ref|YP_005840973.1| - 0.23 11.2 3.3 0.25 11.0 1.3 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2781) DUF898 PF05987.8 gi|385804573|ref|YP_005840973.1| - 1.2 7.9 11.1 4.2 6.1 7.5 1.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF898) Competence PF03772.11 gi|385804573|ref|YP_005840973.1| - 2.4 7.1 16.0 0.31 10.0 7.7 1.7 2 0 0 2 2 2 0 Competence protein PGI PF00342.14 gi|385804574|ref|YP_005840974.1| - 5.1e-50 170.3 0.0 6.9e-50 169.8 0.0 1.1 1 0 0 1 1 1 1 Phosphoglucose isomerase Na_H_Exchanger PF00999.16 gi|385804575|ref|YP_005840975.1| - 3.1e-32 111.5 46.6 4e-32 111.1 32.3 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|385804575|ref|YP_005840975.1| - 9.3e-29 99.7 0.5 2.5e-28 98.4 0.3 1.8 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|385804575|ref|YP_005840975.1| - 1.9e-10 40.1 0.8 1.9e-10 40.1 0.6 2.6 3 0 0 3 3 3 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|385804575|ref|YP_005840975.1| - 1.3e-06 28.6 0.1 4.1e-06 27.0 0.0 1.9 2 0 0 2 2 1 1 Putative NAD(P)-binding F420_oxidored PF03807.12 gi|385804575|ref|YP_005840975.1| - 5.6e-05 23.4 2.2 0.13 12.6 0.1 3.8 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|385804575|ref|YP_005840975.1| - 0.00017 21.8 1.5 0.0038 17.5 0.6 2.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|385804575|ref|YP_005840975.1| - 0.0014 17.7 0.6 0.002 17.2 0.4 1.2 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|385804575|ref|YP_005840975.1| - 0.0028 16.6 1.9 0.0052 15.7 1.3 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|385804575|ref|YP_005840975.1| - 0.0057 16.3 0.5 0.0057 16.3 0.3 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|385804575|ref|YP_005840975.1| - 0.0066 15.9 0.6 0.02 14.3 0.4 1.8 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|385804575|ref|YP_005840975.1| - 0.0066 16.4 1.0 0.016 15.2 0.7 1.7 1 0 0 1 1 1 1 NADH(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|385804575|ref|YP_005840975.1| - 0.0093 15.7 0.8 0.037 13.7 0.1 2.3 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Epimerase PF01370.16 gi|385804575|ref|YP_005840975.1| - 0.048 13.0 0.5 0.076 12.4 0.3 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family UDPG_MGDP_dh_N PF03721.9 gi|385804575|ref|YP_005840975.1| - 0.052 12.9 0.2 0.098 12.0 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.7 gi|385804575|ref|YP_005840975.1| - 0.063 12.1 0.1 0.091 11.6 0.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein 2-Hacid_dh_C PF02826.14 gi|385804575|ref|YP_005840975.1| - 0.15 11.2 2.6 0.14 11.3 0.1 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.9 gi|385804575|ref|YP_005840975.1| - 0.21 11.4 4.4 0.12 12.2 0.3 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AAA PF00004.24 gi|385804577|ref|YP_005840977.1| - 2.9e-40 137.5 0.0 1.3e-39 135.4 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|385804577|ref|YP_005840977.1| - 9e-10 39.4 4.0 3e-09 37.7 0.2 3.1 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|385804577|ref|YP_005840977.1| - 9.8e-07 28.5 0.1 6.2e-06 25.9 0.0 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|385804577|ref|YP_005840977.1| - 2.6e-06 27.7 1.4 1.8e-05 25.0 0.0 2.8 3 0 0 3 3 3 1 AAA domain AAA_33 PF13671.1 gi|385804577|ref|YP_005840977.1| - 3.8e-06 26.8 1.0 1.1e-05 25.3 0.0 2.4 3 1 0 3 3 2 1 AAA domain AAA_16 PF13191.1 gi|385804577|ref|YP_005840977.1| - 8.2e-06 25.9 4.3 0.0021 18.0 1.6 3.8 1 1 1 2 2 2 1 AAA ATPase domain AAA_28 PF13521.1 gi|385804577|ref|YP_005840977.1| - 9.3e-06 25.6 1.0 3.5e-05 23.8 0.0 2.6 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|385804577|ref|YP_005840977.1| - 2.6e-05 24.3 1.1 0.0026 17.9 0.4 3.1 2 1 0 2 2 1 1 AAA domain RuvB_N PF05496.7 gi|385804577|ref|YP_005840977.1| - 6.2e-05 22.1 0.0 0.00014 21.0 0.0 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|385804577|ref|YP_005840977.1| - 0.00013 21.6 0.3 0.0084 15.8 0.0 2.6 2 0 0 2 2 2 1 Part of AAA domain AAA_2 PF07724.9 gi|385804577|ref|YP_005840977.1| - 0.00019 21.3 0.0 0.00046 20.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) T2SE PF00437.15 gi|385804577|ref|YP_005840977.1| - 0.00028 19.8 0.0 0.00082 18.3 0.0 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein MMR_HSR1 PF01926.18 gi|385804577|ref|YP_005840977.1| - 0.0014 18.5 0.0 0.0031 17.4 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase SKI PF01202.17 gi|385804577|ref|YP_005840977.1| - 0.0017 18.2 0.0 0.005 16.7 0.0 1.8 1 0 0 1 1 1 1 Shikimate kinase TIP49 PF06068.8 gi|385804577|ref|YP_005840977.1| - 0.0018 17.0 0.0 0.004 15.9 0.0 1.6 1 0 0 1 1 1 1 TIP49 C-terminus AAA_14 PF13173.1 gi|385804577|ref|YP_005840977.1| - 0.0025 17.7 0.0 0.012 15.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|385804577|ref|YP_005840977.1| - 0.0029 17.0 1.2 0.06 12.7 0.0 3.4 2 1 1 4 4 4 1 AAA domain Cytidylate_kin2 PF13189.1 gi|385804577|ref|YP_005840977.1| - 0.0044 16.9 0.0 0.014 15.3 0.0 1.8 1 0 0 1 1 1 1 Cytidylate kinase-like family Sigma54_activ_2 PF14532.1 gi|385804577|ref|YP_005840977.1| - 0.011 15.8 0.0 0.021 14.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|385804577|ref|YP_005840977.1| - 0.011 15.8 0.0 0.03 14.5 0.0 1.8 1 0 0 1 1 1 0 RNA helicase IstB_IS21 PF01695.12 gi|385804577|ref|YP_005840977.1| - 0.013 14.8 0.0 0.026 13.9 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.7 gi|385804577|ref|YP_005840977.1| - 0.017 14.8 0.0 4.7 6.8 0.0 2.5 1 1 1 2 2 2 0 NACHT domain Zeta_toxin PF06414.7 gi|385804577|ref|YP_005840977.1| - 0.021 13.8 0.0 0.19 10.8 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin ABC_tran PF00005.22 gi|385804577|ref|YP_005840977.1| - 0.022 15.0 0.0 0.087 13.1 0.0 2.0 2 0 0 2 2 1 0 ABC transporter AAA_3 PF07726.6 gi|385804577|ref|YP_005840977.1| - 0.022 14.3 0.2 0.056 13.0 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.1 gi|385804577|ref|YP_005840977.1| - 0.028 14.0 0.0 0.046 13.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|385804577|ref|YP_005840977.1| - 0.031 13.9 0.0 0.13 11.9 0.0 2.1 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Mg_chelatase PF01078.16 gi|385804577|ref|YP_005840977.1| - 0.035 13.2 0.0 0.075 12.1 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ResIII PF04851.10 gi|385804577|ref|YP_005840977.1| - 0.055 13.3 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Rad17 PF03215.10 gi|385804577|ref|YP_005840977.1| - 0.067 11.8 0.0 0.1 11.2 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein SRP54 PF00448.17 gi|385804577|ref|YP_005840977.1| - 0.088 12.2 0.0 0.35 10.2 0.0 2.0 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain Lactamase_B_2 PF12706.2 gi|385804578|ref|YP_005840978.1| - 2.7e-17 62.9 0.4 3.5e-17 62.5 0.3 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|385804578|ref|YP_005840978.1| - 1.4e-06 28.1 1.4 2e-06 27.5 1.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily NifU PF01106.12 gi|385804580|ref|YP_005840980.1| - 1.2e-07 31.4 0.1 1.6e-07 30.9 0.1 1.3 1 0 0 1 1 1 1 NifU-like domain ROK PF00480.15 gi|385804581|ref|YP_005840981.1| - 3.9e-30 105.0 0.2 5.1e-30 104.6 0.2 1.2 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.15 gi|385804581|ref|YP_005840981.1| - 3.9e-05 23.0 0.9 0.00014 21.3 0.3 1.9 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.16 gi|385804581|ref|YP_005840981.1| - 0.026 13.8 0.1 0.053 12.8 0.1 1.6 1 1 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain zf-RING_3 PF14369.1 gi|385804583|ref|YP_005840983.1| - 0.00084 19.2 5.1 0.07 13.1 0.0 3.2 3 0 0 3 3 3 2 zinc-finger zf-CHY PF05495.7 gi|385804583|ref|YP_005840983.1| - 0.018 15.1 3.7 0.24 11.5 0.4 2.4 2 0 0 2 2 2 0 CHY zinc finger DUF4379 PF14311.1 gi|385804583|ref|YP_005840983.1| - 0.031 14.0 0.5 0.12 12.1 0.3 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4379) Stc1 PF12898.2 gi|385804583|ref|YP_005840983.1| - 0.047 13.7 1.4 10 6.2 0.2 2.8 2 1 0 2 2 2 0 Stc1 domain DZR PF12773.2 gi|385804583|ref|YP_005840983.1| - 0.08 12.7 1.8 0.45 10.3 0.2 2.4 2 0 0 2 2 2 0 Double zinc ribbon zinc_ribbon_5 PF13719.1 gi|385804583|ref|YP_005840983.1| - 1.4 8.5 4.8 3 7.5 0.0 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|385804583|ref|YP_005840983.1| - 1.8 8.3 5.2 4.7 6.9 0.0 3.0 3 0 0 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|385804583|ref|YP_005840983.1| - 3.7 7.4 7.1 12 5.8 2.7 2.9 2 1 1 3 3 3 0 Transposase zinc-ribbon domain HTH_20 PF12840.2 gi|385804584|ref|YP_005840984.1| - 0.00068 19.3 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|385804584|ref|YP_005840984.1| - 0.0028 17.2 0.2 0.004 16.7 0.2 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|385804584|ref|YP_005840984.1| - 0.027 13.8 0.0 0.041 13.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|385804584|ref|YP_005840984.1| - 0.041 13.5 0.0 0.053 13.2 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|385804584|ref|YP_005840984.1| - 0.067 13.3 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.1 gi|385804584|ref|YP_005840984.1| - 0.12 12.7 0.1 0.15 12.3 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain GCV_T PF01571.16 gi|385804585|ref|YP_005840985.1| - 9.7e-33 113.3 0.0 1.4e-32 112.7 0.0 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|385804585|ref|YP_005840985.1| - 1.5e-14 53.7 0.0 3.1e-14 52.7 0.0 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain FAD_binding_3 PF01494.14 gi|385804586|ref|YP_005840986.1| - 1.4e-15 57.2 4.0 3.5e-12 46.0 2.8 3.0 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|385804586|ref|YP_005840986.1| - 1.1e-09 37.7 2.9 5.2e-05 22.3 0.2 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|385804586|ref|YP_005840986.1| - 1e-08 34.5 0.6 0.00062 18.7 0.0 2.4 2 1 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|385804586|ref|YP_005840986.1| - 1.4e-07 31.5 0.0 5.1e-06 26.5 0.0 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|385804586|ref|YP_005840986.1| - 0.0009 18.4 0.2 0.0013 17.9 0.1 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|385804586|ref|YP_005840986.1| - 0.0027 16.2 0.2 0.035 12.5 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|385804586|ref|YP_005840986.1| - 0.0068 16.4 0.2 0.02 14.9 0.1 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|385804586|ref|YP_005840986.1| - 0.012 14.4 4.8 0.2 10.4 0.5 2.2 1 1 0 2 2 2 0 FAD binding domain SE PF08491.5 gi|385804586|ref|YP_005840986.1| - 0.16 10.8 0.0 0.52 9.0 0.0 1.7 2 0 0 2 2 2 0 Squalene epoxidase FBPase_3 PF01950.11 gi|385804586|ref|YP_005840986.1| - 0.16 10.8 0.0 0.24 10.3 0.0 1.1 1 0 0 1 1 1 0 Fructose-1,6-bisphosphatase NAD_binding_8 PF13450.1 gi|385804586|ref|YP_005840986.1| - 2.6 8.1 4.5 0.45 10.5 0.1 2.2 2 0 0 2 2 1 0 NAD(P)-binding Rossmann-like domain PvlArgDC PF01862.11 gi|529167409|ref|YP_005840987.2| - 1.9e-34 118.6 0.2 2.1e-34 118.4 0.1 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) DUF2267 PF10025.4 gi|529167409|ref|YP_005840987.2| - 0.1 12.6 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2267) DUF3313 PF11769.3 gi|529167409|ref|YP_005840987.2| - 0.14 11.5 0.6 0.21 10.9 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3313) AAA PF00004.24 gi|385804588|ref|YP_005840988.1| - 3.7e-44 150.1 0.9 1.1e-43 148.5 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|385804588|ref|YP_005840988.1| - 2.3e-08 34.1 0.4 8.4e-08 32.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|385804588|ref|YP_005840988.1| - 7.8e-07 28.9 0.2 4.4e-06 26.4 0.1 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|385804588|ref|YP_005840988.1| - 7.9e-07 28.3 0.0 2.2e-06 26.8 0.0 1.7 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|385804588|ref|YP_005840988.1| - 1e-06 28.8 3.9 0.0011 19.0 0.0 3.2 2 2 2 4 4 4 2 AAA ATPase domain AAA_22 PF13401.1 gi|385804588|ref|YP_005840988.1| - 1.7e-06 28.1 1.1 0.00011 22.3 0.1 2.9 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|385804588|ref|YP_005840988.1| - 4e-05 24.4 1.0 0.00011 22.9 0.0 2.2 2 2 0 2 2 1 1 AAA domain AAA_18 PF13238.1 gi|385804588|ref|YP_005840988.1| - 0.00016 21.9 0.1 0.0062 16.8 0.0 2.6 2 0 0 2 2 2 1 AAA domain DUF904 PF06005.7 gi|385804588|ref|YP_005840988.1| - 0.00024 21.3 5.6 0.00028 21.0 3.0 1.8 2 0 0 2 2 1 1 Protein of unknown function (DUF904) AAA_19 PF13245.1 gi|385804588|ref|YP_005840988.1| - 0.00029 20.5 0.1 0.00086 19.0 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_33 PF13671.1 gi|385804588|ref|YP_005840988.1| - 0.00035 20.4 0.1 0.0012 18.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|385804588|ref|YP_005840988.1| - 0.00037 19.3 0.1 0.00087 18.1 0.0 1.6 1 1 0 1 1 1 1 TIP49 C-terminus AAA_14 PF13173.1 gi|385804588|ref|YP_005840988.1| - 0.00043 20.1 0.0 0.0011 18.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain CASP_C PF08172.7 gi|385804588|ref|YP_005840988.1| - 0.00044 19.3 0.8 0.00065 18.8 0.5 1.3 1 0 0 1 1 1 1 CASP C terminal AAA_28 PF13521.1 gi|385804588|ref|YP_005840988.1| - 0.00066 19.6 0.2 0.0054 16.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|385804588|ref|YP_005840988.1| - 0.0012 17.8 0.0 0.0023 16.8 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NACHT PF05729.7 gi|385804588|ref|YP_005840988.1| - 0.0014 18.3 0.2 0.021 14.4 0.0 2.3 2 0 0 2 2 2 1 NACHT domain IstB_IS21 PF01695.12 gi|385804588|ref|YP_005840988.1| - 0.0016 17.9 0.0 0.0049 16.3 0.0 1.8 1 0 0 1 1 1 1 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|385804588|ref|YP_005840988.1| - 0.0018 17.4 0.0 0.0047 16.0 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin Mg_chelatase PF01078.16 gi|385804588|ref|YP_005840988.1| - 0.0026 16.9 0.0 0.0056 15.8 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI CENP-Q PF13094.1 gi|385804588|ref|YP_005840988.1| - 0.0041 17.1 4.8 0.012 15.6 2.6 2.1 2 0 0 2 2 2 1 CENP-Q, a CENPA-CAD centromere complex subunit NTPase_1 PF03266.10 gi|385804588|ref|YP_005840988.1| - 0.005 16.5 0.0 0.014 15.1 0.0 1.8 1 0 0 1 1 1 1 NTPase Sigma54_activat PF00158.21 gi|385804588|ref|YP_005840988.1| - 0.0051 16.2 0.2 0.068 12.6 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain NB-ARC PF00931.17 gi|385804588|ref|YP_005840988.1| - 0.013 14.3 0.3 0.05 12.4 0.0 2.0 3 0 0 3 3 3 0 NB-ARC domain AAA_3 PF07726.6 gi|385804588|ref|YP_005840988.1| - 0.017 14.6 0.0 0.031 13.8 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|385804588|ref|YP_005840988.1| - 0.018 14.4 8.3 0.26 10.6 0.1 3.6 2 2 1 3 3 3 0 AAA domain Torsin PF06309.6 gi|385804588|ref|YP_005840988.1| - 0.033 14.0 0.0 0.064 13.1 0.0 1.4 1 0 0 1 1 1 0 Torsin CPT PF07931.7 gi|385804588|ref|YP_005840988.1| - 0.034 13.7 0.0 0.087 12.4 0.0 1.7 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein RNA_helicase PF00910.17 gi|385804588|ref|YP_005840988.1| - 0.036 14.2 0.0 0.075 13.2 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_11 PF13086.1 gi|385804588|ref|YP_005840988.1| - 0.043 13.3 0.1 0.13 11.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.1 gi|385804588|ref|YP_005840988.1| - 0.047 13.7 0.0 0.16 11.9 0.0 1.9 2 0 0 2 2 1 0 Sigma-54 interaction domain ABC_tran PF00005.22 gi|385804588|ref|YP_005840988.1| - 0.068 13.4 0.2 0.23 11.7 0.0 2.1 2 1 0 2 2 1 0 ABC transporter Bac_DnaA PF00308.13 gi|385804588|ref|YP_005840988.1| - 0.083 12.5 0.1 2.1 7.9 0.0 2.3 2 0 0 2 2 2 0 Bacterial dnaA protein KaiC PF06745.8 gi|385804588|ref|YP_005840988.1| - 0.13 11.3 1.6 0.86 8.6 0.0 2.5 2 1 1 3 3 3 0 KaiC Nup54 PF13874.1 gi|385804588|ref|YP_005840988.1| - 0.14 11.7 1.7 0.3 10.7 0.7 1.8 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 IncA PF04156.9 gi|385804588|ref|YP_005840988.1| - 0.16 11.5 2.2 0.3 10.6 1.5 1.4 1 0 0 1 1 1 0 IncA protein Parvo_NS1 PF01057.12 gi|385804588|ref|YP_005840988.1| - 0.17 10.7 0.0 0.29 9.9 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Snapin_Pallidin PF14712.1 gi|385804588|ref|YP_005840988.1| - 0.22 11.8 3.0 0.53 10.6 1.7 2.1 1 1 0 1 1 1 0 Snapin/Pallidin AATF-Che1 PF13339.1 gi|385804588|ref|YP_005840988.1| - 0.22 11.6 3.1 0.25 11.5 1.3 1.8 2 0 0 2 2 1 0 Apoptosis antagonizing transcription factor DUF972 PF06156.8 gi|385804588|ref|YP_005840988.1| - 0.29 11.5 3.1 0.74 10.1 2.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF972) zf-HC2 PF13490.1 gi|385804588|ref|YP_005840988.1| - 0.42 10.6 3.3 0.87 9.5 0.1 2.9 3 0 0 3 3 3 0 Putative zinc-finger BLOC1_2 PF10046.4 gi|385804588|ref|YP_005840988.1| - 0.53 10.4 5.5 0.21 11.7 1.2 2.3 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 dUTPase PF00692.14 gi|385804589|ref|YP_005840989.1| - 5.1e-10 38.8 0.0 8e-10 38.2 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|385804589|ref|YP_005840989.1| - 0.052 11.9 0.0 0.59 8.4 0.0 2.0 1 1 1 2 2 2 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Aconitase PF00330.15 gi|385804590|ref|YP_005840990.1| - 3.8e-99 332.2 0.4 5.8e-70 236.0 0.0 2.2 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|385804590|ref|YP_005840990.1| - 1.8e-21 76.5 0.0 3.4e-21 75.7 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain Barwin PF00967.12 gi|385804590|ref|YP_005840990.1| - 0.094 12.3 0.2 0.36 10.5 0.0 2.0 2 0 0 2 2 2 0 Barwin family Acetyltransf_1 PF00583.19 gi|385804591|ref|YP_005840991.1| - 1.5e-16 60.2 0.0 2e-16 59.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|385804591|ref|YP_005840991.1| - 3.8e-09 36.1 0.0 5.9e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|385804591|ref|YP_005840991.1| - 1.4e-08 34.8 0.0 1.7e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|385804591|ref|YP_005840991.1| - 5.2e-05 23.1 0.0 6.5e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|385804591|ref|YP_005840991.1| - 0.0001 22.3 0.0 0.00014 21.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|385804591|ref|YP_005840991.1| - 0.0049 17.0 0.0 0.0056 16.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|385804591|ref|YP_005840991.1| - 0.0087 15.6 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|385804591|ref|YP_005840991.1| - 0.058 13.2 0.0 0.24 11.2 0.0 2.0 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|385804591|ref|YP_005840991.1| - 0.14 11.9 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase NAD_binding_8 PF13450.1 gi|385804592|ref|YP_005840992.1| - 1.5e-14 53.7 0.2 4.1e-14 52.3 0.1 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|385804592|ref|YP_005840992.1| - 3.8e-09 36.1 1.3 1.6e-05 24.1 0.0 2.1 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase DAO PF01266.19 gi|385804592|ref|YP_005840992.1| - 1.4e-07 30.7 0.0 4.8e-07 28.9 0.0 1.8 1 1 1 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|385804592|ref|YP_005840992.1| - 1.5e-05 25.1 0.4 8.3e-05 22.7 0.2 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|385804592|ref|YP_005840992.1| - 5.4e-05 23.0 0.2 0.051 13.3 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox_2 PF07992.9 gi|385804592|ref|YP_005840992.1| - 0.00014 21.8 0.8 0.00014 21.8 0.6 1.8 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|385804592|ref|YP_005840992.1| - 0.0011 18.0 0.2 0.0017 17.4 0.1 1.2 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|385804592|ref|YP_005840992.1| - 0.004 16.2 0.1 0.0053 15.8 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|385804592|ref|YP_005840992.1| - 0.0044 16.7 0.0 0.0074 15.9 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.9 gi|385804592|ref|YP_005840992.1| - 0.0059 15.1 1.4 0.017 13.5 1.0 1.6 2 0 0 2 2 2 1 HI0933-like protein ApbA PF02558.11 gi|385804592|ref|YP_005840992.1| - 0.029 13.7 0.1 7.5 5.9 0.0 2.2 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.1 gi|385804592|ref|YP_005840992.1| - 0.031 14.5 0.1 0.08 13.2 0.1 1.9 1 1 0 1 1 1 0 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|385804592|ref|YP_005840992.1| - 0.045 12.8 0.4 0.073 12.1 0.3 1.3 1 0 0 1 1 1 0 FAD binding domain GIDA PF01134.17 gi|385804592|ref|YP_005840992.1| - 0.088 11.6 1.6 0.15 10.9 1.1 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A Shikimate_DH PF01488.15 gi|385804592|ref|YP_005840992.1| - 0.11 12.6 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Pyr_redox PF00070.22 gi|385804592|ref|YP_005840992.1| - 0.13 12.6 1.5 0.63 10.4 0.2 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|385804592|ref|YP_005840992.1| - 0.34 9.7 4.3 0.29 9.9 2.0 1.6 2 0 0 2 2 2 0 FAD binding domain PHP_C PF13263.1 gi|385804593|ref|YP_005840993.1| - 1.7e-21 75.4 0.3 8.5e-21 73.2 0.1 2.0 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|385804593|ref|YP_005840993.1| - 1.8e-14 53.9 0.0 1.3e-13 51.1 0.0 2.0 1 1 0 1 1 1 1 PHP domain TfuA PF07812.7 gi|385804593|ref|YP_005840993.1| - 0.048 13.0 0.6 0.3 10.5 0.2 2.1 2 0 0 2 2 2 0 TfuA-like protein HTH_AsnC-type PF13404.1 gi|385804594|ref|YP_005840994.1| - 6.9e-05 22.3 0.1 0.00088 18.7 0.0 2.4 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Glycos_transf_3 PF00591.16 gi|385804595|ref|YP_005840995.1| - 1.6e-30 106.3 0.0 3.8e-30 105.1 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|385804595|ref|YP_005840995.1| - 7.1e-10 38.3 0.1 4.1e-09 35.8 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Pro_isomerase PF00160.16 gi|385804596|ref|YP_005840996.1| - 2.5e-49 167.4 0.0 2.8e-49 167.2 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Fer4_15 PF13459.1 gi|385804597|ref|YP_005840997.1| - 0.0035 17.8 0.5 0.0035 17.8 0.3 1.9 2 1 0 2 2 2 1 4Fe-4S single cluster domain IncA PF04156.9 gi|385804598|ref|YP_005840998.1| - 0.0079 15.8 1.1 0.013 15.0 0.2 1.8 1 1 0 1 1 1 1 IncA protein CoA_binding_3 PF13727.1 gi|385804598|ref|YP_005840998.1| - 0.14 12.0 3.9 0.29 10.9 0.0 2.5 2 0 0 2 2 2 0 CoA-binding domain WHIM2 PF15613.1 gi|385804598|ref|YP_005840998.1| - 0.24 11.4 1.9 0.62 10.0 1.3 1.7 1 0 0 1 1 1 0 WSTF, HB1, Itc1p, MBD9 motif 2 p450 PF00067.17 gi|385804599|ref|YP_005840999.1| - 6.1e-73 245.9 0.0 7.9e-73 245.5 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 Radical_SAM PF04055.16 gi|385804600|ref|YP_005841000.1| - 2.6e-15 56.9 0.0 4.4e-15 56.2 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily DUF457 PF04307.9 gi|385804601|ref|YP_005841001.1| - 1.5e-07 30.9 10.8 2.5e-07 30.1 7.5 1.4 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) ABC2_membrane_4 PF12730.2 gi|385804601|ref|YP_005841001.1| - 0.0033 16.6 0.7 0.0059 15.7 0.5 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein PRA1 PF03208.14 gi|385804601|ref|YP_005841001.1| - 0.14 11.4 0.1 0.27 10.5 0.1 1.5 1 0 0 1 1 1 0 PRA1 family protein Radical_SAM PF04055.16 gi|385804602|ref|YP_005841002.1| - 2.9e-10 40.5 0.0 1.2e-09 38.5 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily GPAT_N PF14829.1 gi|385804602|ref|YP_005841002.1| - 0.082 12.6 0.0 16 5.2 0.0 2.6 2 0 0 2 2 2 0 Glycerol-3-phosphate acyltransferase N-terminal KdpD PF02702.12 gi|385804602|ref|YP_005841002.1| - 0.088 11.9 0.0 0.22 10.6 0.0 1.6 2 0 0 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain SAICAR_synt PF01259.13 gi|385804603|ref|YP_005841003.1| - 3.2e-18 65.7 0.0 1.7e-17 63.3 0.0 1.8 1 1 0 1 1 1 1 SAICAR synthetase DUF4259 PF14078.1 gi|385804603|ref|YP_005841003.1| - 0.017 15.6 1.3 0.08 13.4 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4259) Formyl_trans_N PF00551.14 gi|385804604|ref|YP_005841004.1| - 1.6e-40 138.6 0.0 2.3e-40 138.0 0.0 1.3 1 0 0 1 1 1 1 Formyl transferase ACT_6 PF13740.1 gi|385804604|ref|YP_005841004.1| - 1.7e-10 40.4 0.4 3.7e-10 39.3 0.3 1.5 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|385804604|ref|YP_005841004.1| - 1.6e-07 30.6 1.1 4e-07 29.3 0.2 2.2 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|385804604|ref|YP_005841004.1| - 0.00021 21.5 0.3 0.00068 19.9 0.2 1.8 1 0 0 1 1 1 1 ACT domain Glyco_transf_28 PF03033.15 gi|385804604|ref|YP_005841004.1| - 0.036 13.8 0.0 0.093 12.4 0.0 1.7 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain ACT_7 PF13840.1 gi|385804604|ref|YP_005841004.1| - 0.043 13.3 0.1 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 ACT domain MTS_N PF08468.6 gi|385804604|ref|YP_005841004.1| - 0.07 12.9 0.0 0.69 9.7 0.0 2.1 1 1 1 2 2 2 0 Methyltransferase small domain N-terminal PurS PF02700.9 gi|385804605|ref|YP_005841005.1| - 1.4e-26 92.1 0.0 1.7e-26 91.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase AP_endonuc_2 PF01261.19 gi|385804605|ref|YP_005841005.1| - 0.014 14.6 0.1 0.015 14.5 0.0 1.1 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel DUF1822 PF08852.6 gi|385804605|ref|YP_005841005.1| - 0.085 11.6 0.0 0.086 11.6 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1822) AP2 PF00847.15 gi|385804605|ref|YP_005841005.1| - 0.54 10.4 3.3 13 5.9 0.9 2.1 1 1 1 2 2 2 0 AP2 domain GATase_5 PF13507.1 gi|385804606|ref|YP_005841006.1| - 6.7e-45 153.0 0.0 8.1e-45 152.7 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|385804606|ref|YP_005841006.1| - 5.6e-09 35.7 0.0 7.1e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|385804606|ref|YP_005841006.1| - 3.1e-06 26.8 0.0 5.1e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|385804606|ref|YP_005841006.1| - 0.00032 20.1 0.1 0.0011 18.4 0.1 1.7 1 1 0 1 1 1 1 Peptidase C26 DUF4066 PF13278.1 gi|385804606|ref|YP_005841006.1| - 0.0019 17.4 0.0 0.0027 16.9 0.0 1.3 1 0 0 1 1 1 1 Putative amidotransferase DJ-1_PfpI PF01965.19 gi|385804606|ref|YP_005841006.1| - 0.0044 16.4 0.0 0.0064 15.9 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family AfsA PF03756.8 gi|385804608|ref|YP_005841008.1| - 0.0045 16.7 1.2 0.049 13.3 0.0 2.9 3 0 0 3 3 3 1 A-factor biosynthesis hotdog domain CarboxypepD_reg PF13620.1 gi|385804608|ref|YP_005841008.1| - 1.7 8.7 8.4 3.6 7.7 0.4 3.8 3 1 0 3 3 3 0 Carboxypeptidase regulatory-like domain Lactamase_B PF00753.22 gi|385804610|ref|YP_005841010.1| - 2.6e-21 76.1 2.8 4.4e-21 75.4 1.9 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|385804610|ref|YP_005841010.1| - 1.2e-05 24.9 0.2 2e-05 24.2 0.2 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain PDEase_II PF02112.10 gi|385804610|ref|YP_005841010.1| - 0.14 11.0 0.5 0.43 9.4 0.2 1.7 2 0 0 2 2 2 0 cAMP phosphodiesterases class-II tRNA-synt_2b PF00587.20 gi|385804611|ref|YP_005841011.1| - 1.9e-34 118.7 0.0 2.6e-34 118.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|385804611|ref|YP_005841011.1| - 9.8e-28 96.3 6.0 1.4e-27 95.8 4.2 1.2 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain DUF342 PF03961.8 gi|385804611|ref|YP_005841011.1| - 0.091 11.1 1.1 0.13 10.6 0.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) tRNA-synt_His PF13393.1 gi|385804611|ref|YP_005841011.1| - 0.15 11.1 1.3 1.7 7.5 0.0 2.1 2 0 0 2 2 2 0 Histidyl-tRNA synthetase Mnd1 PF03962.10 gi|385804611|ref|YP_005841011.1| - 0.2 11.3 3.8 0.32 10.6 2.6 1.2 1 0 0 1 1 1 0 Mnd1 family DUF4391 PF14335.1 gi|385804611|ref|YP_005841011.1| - 0.22 10.8 1.2 0.33 10.2 0.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4391) LUC7 PF03194.10 gi|385804611|ref|YP_005841011.1| - 0.28 10.6 2.3 0.42 10.1 1.6 1.1 1 0 0 1 1 1 0 LUC7 N_terminus DUF904 PF06005.7 gi|385804611|ref|YP_005841011.1| - 0.79 10.0 7.6 78 3.6 5.2 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF904) DUF367 PF04034.8 gi|385804612|ref|YP_005841012.1| - 5e-42 142.5 0.0 6.3e-42 142.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|385804612|ref|YP_005841012.1| - 3.6e-09 36.0 0.0 5.4e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI MMR_HSR1 PF01926.18 gi|385804613|ref|YP_005841013.1| - 1.6e-20 73.1 0.0 3.4e-20 72.1 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.9 gi|385804613|ref|YP_005841013.1| - 1.2e-17 63.5 0.0 2.4e-17 62.5 0.0 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.13 gi|385804613|ref|YP_005841013.1| - 1.2e-12 47.4 0.0 1.7e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|385804613|ref|YP_005841013.1| - 2.2e-08 34.0 0.4 0.0023 17.7 0.0 3.2 2 1 1 3 3 3 2 Dynamin family Miro PF08477.8 gi|385804613|ref|YP_005841013.1| - 7.6e-06 26.4 0.0 1.8e-05 25.1 0.0 1.7 1 0 0 1 1 1 1 Miro-like protein AIG1 PF04548.11 gi|385804613|ref|YP_005841013.1| - 0.0011 18.1 0.0 0.0018 17.3 0.0 1.5 1 0 0 1 1 1 1 AIG1 family AAA_16 PF13191.1 gi|385804613|ref|YP_005841013.1| - 0.0083 16.1 0.1 0.1 12.5 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain GTP_EFTU PF00009.22 gi|385804613|ref|YP_005841013.1| - 0.043 13.2 0.0 3.7 6.9 0.0 2.9 1 1 1 2 2 2 0 Elongation factor Tu GTP binding domain DUF258 PF03193.11 gi|385804613|ref|YP_005841013.1| - 0.053 12.7 0.0 0.18 10.9 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function, DUF258 Ras PF00071.17 gi|385804613|ref|YP_005841013.1| - 0.059 12.7 0.0 0.33 10.3 0.0 2.2 1 1 0 1 1 1 0 Ras family AAA_17 PF13207.1 gi|385804613|ref|YP_005841013.1| - 0.15 12.8 0.5 0.85 10.4 0.0 2.3 2 2 0 2 2 2 0 AAA domain DUF389 PF04087.9 gi|385804614|ref|YP_005841014.1| - 3.2e-35 121.1 22.4 3.2e-35 121.1 15.5 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF389) DuffyBP_N PF12377.3 gi|385804614|ref|YP_005841014.1| - 0.13 12.5 0.0 22 5.3 0.0 2.3 2 0 0 2 2 2 0 Duffy binding protein N terminal TrkA_N PF02254.13 gi|385804616|ref|YP_005841016.1| - 4.5e-25 87.9 1.0 7.5e-25 87.1 0.7 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|385804616|ref|YP_005841016.1| - 1.6e-08 34.0 1.0 4e-08 32.7 0.1 2.0 2 0 0 2 2 2 1 TrkA-C domain DAO PF01266.19 gi|385804616|ref|YP_005841016.1| - 1.5e-07 30.6 0.4 1.9e-07 30.3 0.3 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|385804616|ref|YP_005841016.1| - 1.6e-06 28.3 0.3 3.1e-06 27.3 0.2 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|385804616|ref|YP_005841016.1| - 2.2e-06 26.9 0.1 2.7e-06 26.6 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain AdoHcyase_NAD PF00670.16 gi|385804616|ref|YP_005841016.1| - 2.1e-05 24.3 0.5 0.00011 22.0 0.2 2.0 1 1 1 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|385804616|ref|YP_005841016.1| - 9.5e-05 21.8 0.2 0.00018 20.9 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.1 gi|385804616|ref|YP_005841016.1| - 0.00013 21.9 2.3 0.00025 21.0 1.1 1.7 1 1 1 2 2 2 1 NADH(P)-binding Pyr_redox PF00070.22 gi|385804616|ref|YP_005841016.1| - 0.00049 20.4 0.1 0.0013 19.1 0.1 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|385804616|ref|YP_005841016.1| - 0.0006 19.7 0.4 0.0013 18.6 0.2 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|385804616|ref|YP_005841016.1| - 0.00083 18.5 0.1 0.0011 18.1 0.1 1.2 1 0 0 1 1 1 1 Thi4 family AlaDh_PNT_C PF01262.16 gi|385804616|ref|YP_005841016.1| - 0.0014 18.1 0.3 0.0031 17.0 0.1 1.7 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.1 gi|385804616|ref|YP_005841016.1| - 0.0015 18.5 0.4 0.0015 18.5 0.3 1.7 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.13 gi|385804616|ref|YP_005841016.1| - 0.0021 17.7 0.3 0.0044 16.6 0.2 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|385804616|ref|YP_005841016.1| - 0.0028 17.4 0.7 0.096 12.5 0.1 2.3 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase FAD_binding_2 PF00890.19 gi|385804616|ref|YP_005841016.1| - 0.0032 16.3 0.8 0.0043 15.9 0.6 1.2 1 0 0 1 1 1 1 FAD binding domain XdhC_C PF13478.1 gi|385804616|ref|YP_005841016.1| - 0.0041 17.4 0.1 0.011 16.0 0.1 1.7 2 0 0 2 2 2 1 XdhC Rossmann domain Saccharop_dh PF03435.13 gi|385804616|ref|YP_005841016.1| - 0.0043 16.0 0.9 0.016 14.2 0.3 1.8 1 1 1 2 2 2 1 Saccharopine dehydrogenase ApbA PF02558.11 gi|385804616|ref|YP_005841016.1| - 0.0098 15.3 0.4 0.018 14.4 0.2 1.5 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA HI0933_like PF03486.9 gi|385804616|ref|YP_005841016.1| - 0.016 13.6 0.1 0.029 12.8 0.1 1.4 1 0 0 1 1 1 0 HI0933-like protein IlvN PF07991.7 gi|385804616|ref|YP_005841016.1| - 0.019 14.3 0.1 0.033 13.5 0.1 1.6 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Pyr_redox_3 PF13738.1 gi|385804616|ref|YP_005841016.1| - 0.027 14.5 0.3 0.056 13.5 0.1 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|385804616|ref|YP_005841016.1| - 0.058 13.1 0.6 0.11 12.2 0.0 1.8 3 0 0 3 3 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|385804616|ref|YP_005841016.1| - 0.064 12.4 0.3 0.15 11.1 0.1 1.7 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|385804616|ref|YP_005841016.1| - 0.075 13.4 0.8 0.21 12.0 0.4 2.1 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Lycopene_cycl PF05834.7 gi|385804616|ref|YP_005841016.1| - 0.083 11.7 1.1 0.085 11.7 0.1 1.5 2 0 0 2 2 2 0 Lycopene cyclase protein CPSase_L_chain PF00289.17 gi|385804616|ref|YP_005841016.1| - 0.094 12.8 0.1 0.21 11.6 0.1 1.6 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain UPF0146 PF03686.8 gi|385804616|ref|YP_005841016.1| - 0.14 12.0 0.8 0.35 10.6 0.2 1.8 1 1 0 2 2 2 0 Uncharacterised protein family (UPF0146) ABC2_membrane_2 PF12679.2 gi|385804617|ref|YP_005841017.1| - 0.053 12.3 9.8 0.062 12.1 6.8 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein Thymidylate_kin PF02223.12 gi|385804618|ref|YP_005841018.1| - 3.8e-39 133.9 0.0 4.4e-39 133.7 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_33 PF13671.1 gi|385804618|ref|YP_005841018.1| - 2e-05 24.4 0.0 3.2e-05 23.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|385804618|ref|YP_005841018.1| - 0.00017 21.9 0.0 0.00043 20.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|385804618|ref|YP_005841018.1| - 0.00041 20.3 0.1 0.00051 20.0 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|385804618|ref|YP_005841018.1| - 0.0036 17.4 0.0 0.01 16.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain CPT PF07931.7 gi|385804618|ref|YP_005841018.1| - 0.0099 15.5 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein AAA_17 PF13207.1 gi|385804618|ref|YP_005841018.1| - 0.012 16.3 0.1 0.026 15.3 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|385804618|ref|YP_005841018.1| - 0.048 13.2 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain APS_kinase PF01583.15 gi|385804618|ref|YP_005841018.1| - 0.06 13.0 0.0 0.089 12.4 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase CoaE PF01121.15 gi|385804618|ref|YP_005841018.1| - 0.11 11.8 0.1 8.6 5.7 0.0 2.5 2 1 0 2 2 2 0 Dephospho-CoA kinase KTI12 PF08433.5 gi|385804618|ref|YP_005841018.1| - 0.12 11.5 0.0 0.19 10.9 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NAD_binding_10 PF13460.1 gi|385804619|ref|YP_005841019.1| - 7.5e-27 94.5 0.3 1.9e-26 93.1 0.0 1.7 2 0 0 2 2 2 1 NADH(P)-binding Epimerase PF01370.16 gi|385804619|ref|YP_005841019.1| - 4.7e-18 65.4 0.0 2.3e-17 63.2 0.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|385804619|ref|YP_005841019.1| - 2.7e-14 52.5 0.0 5.7e-12 44.9 0.0 2.1 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|385804619|ref|YP_005841019.1| - 1.8e-13 50.0 0.0 1.4e-06 27.3 0.0 2.2 2 0 0 2 2 2 2 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|385804619|ref|YP_005841019.1| - 5.8e-06 25.4 0.0 0.012 14.5 0.0 2.4 1 1 0 2 2 2 2 Male sterility protein NmrA PF05368.8 gi|385804619|ref|YP_005841019.1| - 7.8e-06 25.3 0.0 1.5e-05 24.4 0.0 1.5 1 1 0 1 1 1 1 NmrA-like family Polysacc_synt_2 PF02719.10 gi|385804619|ref|YP_005841019.1| - 0.00015 20.7 0.1 0.0011 17.9 0.1 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|385804619|ref|YP_005841019.1| - 0.00016 21.6 0.0 0.00055 19.8 0.0 1.7 1 1 0 1 1 1 1 short chain dehydrogenase Pyr_redox PF00070.22 gi|385804619|ref|YP_005841019.1| - 0.0066 16.8 0.0 0.016 15.5 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.12 gi|385804619|ref|YP_005841019.1| - 0.011 16.0 0.0 0.052 13.9 0.0 2.0 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|385804619|ref|YP_005841019.1| - 0.011 15.6 0.0 0.023 14.7 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain ApbA PF02558.11 gi|385804619|ref|YP_005841019.1| - 0.014 14.8 0.0 0.025 14.0 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Glyco_trans_4_4 PF13579.1 gi|385804619|ref|YP_005841019.1| - 0.028 14.5 0.0 0.041 14.0 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain DAO PF01266.19 gi|385804619|ref|YP_005841019.1| - 0.028 13.3 0.0 0.21 10.4 0.0 2.0 2 0 0 2 2 2 0 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|385804619|ref|YP_005841019.1| - 0.038 13.3 0.0 0.069 12.5 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Glyco_transf_4 PF13439.1 gi|385804619|ref|YP_005841019.1| - 0.043 13.5 0.0 0.079 12.6 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 CPSase_L_chain PF00289.17 gi|385804619|ref|YP_005841019.1| - 0.074 13.1 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_binding_2 PF03446.10 gi|385804619|ref|YP_005841019.1| - 0.12 12.1 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Tubulin PF00091.20 gi|385804620|ref|YP_005841020.1| - 5.1e-27 95.1 0.1 1.4e-26 93.6 0.0 1.7 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain DUF4398 PF14346.1 gi|385804621|ref|YP_005841021.1| - 0.00073 19.5 4.4 0.0013 18.7 3.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4398) DUF1771 PF08590.5 gi|385804621|ref|YP_005841021.1| - 0.016 15.1 1.2 0.027 14.4 0.9 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1771) DUF3708 PF12501.3 gi|385804621|ref|YP_005841021.1| - 0.027 14.3 1.3 0.062 13.1 0.9 1.6 1 0 0 1 1 1 0 Phosphate ATP-binding cassette transporter Rsd_AlgQ PF04353.8 gi|385804621|ref|YP_005841021.1| - 0.091 12.4 0.1 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ PTS_IIA PF02255.11 gi|385804621|ref|YP_005841021.1| - 0.12 12.3 3.8 0.11 12.3 1.5 1.8 1 1 1 2 2 2 0 PTS system, Lactose/Cellobiose specific IIA subunit HemY_N PF07219.8 gi|385804621|ref|YP_005841021.1| - 0.32 10.5 2.6 0.3 10.6 0.3 2.0 2 0 0 2 2 2 0 HemY protein N-terminus CofC PF01983.11 gi|385804622|ref|YP_005841022.1| - 1.3e-36 125.6 0.0 1.2e-27 96.2 0.0 2.1 2 0 0 2 2 2 2 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|385804622|ref|YP_005841022.1| - 0.0083 16.2 0.1 0.027 14.5 0.1 1.8 1 1 0 1 1 1 1 MobA-like NTP transferase domain DUF3236 PF11576.3 gi|385804622|ref|YP_005841022.1| - 0.023 14.1 0.1 0.051 12.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3236) CDC48_N PF02359.13 gi|385804622|ref|YP_005841022.1| - 0.064 13.2 0.1 0.33 10.9 0.0 2.1 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain MMR_HSR1 PF01926.18 gi|385804623|ref|YP_005841023.1| - 6.9e-17 61.4 0.0 1e-16 60.9 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|385804623|ref|YP_005841023.1| - 1.5e-12 47.0 0.0 2.1e-11 43.3 0.0 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|385804623|ref|YP_005841023.1| - 1.4e-06 27.8 0.0 0.00092 18.6 0.0 2.3 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain AIG1 PF04548.11 gi|385804623|ref|YP_005841023.1| - 4.2e-05 22.7 0.0 7.5e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 AIG1 family DUF258 PF03193.11 gi|385804623|ref|YP_005841023.1| - 0.0042 16.2 0.1 0.0074 15.4 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|385804623|ref|YP_005841023.1| - 0.0069 16.6 0.0 0.011 16.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|385804623|ref|YP_005841023.1| - 0.024 14.9 0.1 0.036 14.3 0.1 1.6 1 1 0 1 1 1 0 ABC transporter ATP_bind_1 PF03029.12 gi|385804623|ref|YP_005841023.1| - 0.033 13.7 0.6 0.69 9.3 0.0 2.2 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_17 PF13207.1 gi|385804623|ref|YP_005841023.1| - 0.06 14.1 0.2 0.17 12.6 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|385804623|ref|YP_005841023.1| - 0.063 12.8 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Dynamin_N PF00350.18 gi|385804623|ref|YP_005841023.1| - 0.063 13.0 0.1 0.22 11.3 0.1 1.9 1 1 0 1 1 1 0 Dynamin family Miro PF08477.8 gi|385804623|ref|YP_005841023.1| - 0.11 13.0 0.1 0.26 11.7 0.1 1.9 1 1 0 1 1 1 0 Miro-like protein Arch_ATPase PF01637.13 gi|385804623|ref|YP_005841023.1| - 0.12 12.1 0.0 0.3 10.7 0.0 1.6 2 0 0 2 2 2 0 Archaeal ATPase Prok-JAB PF14464.1 gi|385804624|ref|YP_005841024.1| - 2.4e-13 49.5 0.3 2.4e-13 49.5 0.2 1.6 2 0 0 2 2 2 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|385804624|ref|YP_005841024.1| - 2.4e-08 33.7 0.3 4e-08 32.9 0.0 1.5 2 0 0 2 2 2 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Toxin-JAB1 PF15659.1 gi|385804624|ref|YP_005841024.1| - 0.043 13.7 1.8 0.28 11.0 0.0 2.1 2 0 0 2 2 2 0 JAB-like toxin 1 Rhodanese PF00581.15 gi|385804625|ref|YP_005841025.1| - 5.3e-15 55.7 0.0 6.6e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain F420_ligase PF01996.11 gi|385804626|ref|YP_005841026.1| - 6.5e-65 218.3 0.0 7.4e-65 218.2 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Bac_luciferase PF00296.15 gi|385804627|ref|YP_005841027.1| - 5.4e-55 186.6 1.9 7.7e-55 186.1 1.3 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase GFO_IDH_MocA PF01408.17 gi|385804627|ref|YP_005841027.1| - 0.07 13.6 0.0 0.16 12.5 0.0 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold H_PPase PF03030.11 gi|385804628|ref|YP_005841028.1| - 0.0097 14.2 1.0 0.01 14.1 0.7 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase YrhK PF14145.1 gi|385804628|ref|YP_005841028.1| - 0.21 11.2 4.6 0.56 9.9 3.2 2.0 1 1 0 1 1 1 0 YrhK-like protein ABC2_membrane PF01061.19 gi|385804628|ref|YP_005841028.1| - 1.5 7.9 9.0 1.8 7.6 6.2 1.1 1 0 0 1 1 1 0 ABC-2 type transporter Zn_Tnp_IS1595 PF12760.2 gi|385804629|ref|YP_005841029.1| - 0.0057 16.4 1.9 0.0091 15.7 1.3 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Nudix_N_2 PF14803.1 gi|385804629|ref|YP_005841029.1| - 0.24 11.1 3.1 0.16 11.6 0.6 1.9 2 1 0 2 2 2 0 Nudix N-terminal Zn_Tnp_IS91 PF14319.1 gi|385804629|ref|YP_005841029.1| - 0.42 10.1 2.8 0.27 10.7 1.0 1.5 1 1 0 1 1 1 0 Transposase zinc-binding domain Mucin PF01456.12 gi|385804629|ref|YP_005841029.1| - 2.4 7.9 15.4 3.4 7.4 10.7 1.2 1 0 0 1 1 1 0 Mucin-like glycoprotein MutL_C PF08676.6 gi|385804630|ref|YP_005841030.1| - 1.9e-27 95.6 0.0 4.4e-27 94.4 0.0 1.6 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.14 gi|385804630|ref|YP_005841030.1| - 1.5e-26 92.1 0.1 2.6e-26 91.3 0.0 1.4 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.1 gi|385804630|ref|YP_005841030.1| - 5.4e-13 48.7 0.6 2.4e-12 46.6 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|385804630|ref|YP_005841030.1| - 7.2e-09 35.3 0.1 1.7e-08 34.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MutS_V PF00488.16 gi|385804631|ref|YP_005841031.1| - 4.4e-91 304.4 0.2 8e-91 303.6 0.2 1.4 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|385804631|ref|YP_005841031.1| - 2.9e-40 138.2 4.0 7.3e-40 136.9 2.8 1.7 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.15 gi|385804631|ref|YP_005841031.1| - 7.2e-34 116.2 0.0 1.6e-33 115.1 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.13 gi|385804631|ref|YP_005841031.1| - 5.5e-27 93.7 0.4 1.9e-26 92.0 0.1 2.1 2 0 0 2 2 2 1 MutS family domain IV MutS_II PF05188.12 gi|385804631|ref|YP_005841031.1| - 5.9e-11 42.5 0.0 1.5e-10 41.3 0.0 1.7 1 0 0 1 1 1 1 MutS domain II AAA_29 PF13555.1 gi|385804631|ref|YP_005841031.1| - 0.02 14.4 0.0 0.047 13.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|385804631|ref|YP_005841031.1| - 0.027 14.7 0.0 0.11 12.7 0.0 2.1 1 1 0 1 1 1 0 ABC transporter AAA_14 PF13173.1 gi|385804631|ref|YP_005841031.1| - 0.028 14.3 0.0 0.072 12.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|385804631|ref|YP_005841031.1| - 0.046 14.0 0.3 0.54 10.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_3 PF07726.6 gi|385804632|ref|YP_005841032.1| - 4.4e-59 197.7 0.3 7.9e-59 196.9 0.2 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|385804632|ref|YP_005841032.1| - 1.7e-12 47.2 0.0 7e-12 45.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|385804632|ref|YP_005841032.1| - 1.2e-07 31.9 0.0 1.1e-06 28.8 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|385804632|ref|YP_005841032.1| - 3.1e-05 23.5 0.0 0.0031 16.9 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain MCM PF00493.18 gi|385804632|ref|YP_005841032.1| - 0.00044 19.1 0.0 0.12 11.1 0.0 2.4 2 1 0 2 2 2 2 MCM2/3/5 family Mg_chelatase PF01078.16 gi|385804632|ref|YP_005841032.1| - 0.00075 18.7 0.1 0.0027 16.8 0.0 1.9 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|385804632|ref|YP_005841032.1| - 0.002 17.2 0.1 0.011 14.7 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|385804632|ref|YP_005841032.1| - 0.025 14.7 0.1 0.32 11.1 0.0 2.5 2 1 1 3 3 3 0 AAA domain DUF58 PF01882.13 gi|385804633|ref|YP_005841033.1| - 1.5e-18 66.7 0.1 2.8e-18 65.8 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 Transglut_core PF01841.14 gi|385804634|ref|YP_005841034.1| - 2.3e-27 95.4 1.4 5.1e-27 94.3 0.0 2.3 3 1 1 4 4 4 1 Transglutaminase-like superfamily DUF4129 PF13559.1 gi|385804634|ref|YP_005841034.1| - 3.9e-06 26.7 9.0 7.7e-06 25.7 5.0 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) Transglut_core3 PF13471.1 gi|385804634|ref|YP_005841034.1| - 5.8e-06 26.0 0.1 3.2e-05 23.7 0.0 2.2 2 0 0 2 2 2 1 Transglutaminase-like superfamily DUF4218 PF13960.1 gi|385804634|ref|YP_005841034.1| - 0.11 11.9 0.1 0.26 10.7 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4218) SUI1 PF01253.17 gi|385804635|ref|YP_005841035.1| - 1.1e-24 86.0 0.0 1.3e-24 85.8 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|385804635|ref|YP_005841035.1| - 0.066 13.4 0.0 0.094 12.9 0.0 1.5 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.10 gi|385804635|ref|YP_005841035.1| - 0.073 12.2 0.3 0.087 12.0 0.2 1.1 1 0 0 1 1 1 0 DTW domain DUF2631 PF10939.3 gi|385804635|ref|YP_005841035.1| - 0.12 12.2 0.1 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2631) NUDIX PF00293.23 gi|385804636|ref|YP_005841036.1| - 6.5e-14 51.7 0.1 9e-14 51.2 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain DUF3090 PF11290.3 gi|385804638|ref|YP_005841038.1| - 0.41 10.0 7.7 0.083 12.3 1.8 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3090) GATase PF00117.23 gi|385804639|ref|YP_005841039.1| - 3.9e-42 143.8 0.0 2.2e-30 105.5 0.0 2.0 1 1 1 2 2 2 2 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|385804639|ref|YP_005841039.1| - 0.00037 19.9 0.0 0.15 11.4 0.0 2.6 2 1 0 2 2 2 2 Peptidase C26 Chorismate_bind PF00425.13 gi|385804640|ref|YP_005841040.1| - 6.9e-87 291.0 0.2 1e-85 287.1 0.0 2.2 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|385804640|ref|YP_005841040.1| - 4.5e-22 78.5 0.9 4.1e-21 75.4 0.0 2.9 3 2 1 4 4 4 1 Anthranilate synthase component I, N terminal region PRAI PF00697.17 gi|385804641|ref|YP_005841041.1| - 1.2e-37 129.4 0.6 1.4e-37 129.1 0.4 1.1 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase His_biosynth PF00977.16 gi|385804641|ref|YP_005841041.1| - 0.02 14.1 2.5 0.14 11.3 1.7 2.4 1 1 0 1 1 1 0 Histidine biosynthesis protein TMP-TENI PF02581.12 gi|385804641|ref|YP_005841041.1| - 0.047 12.8 3.2 0.039 13.0 0.7 1.8 1 1 0 2 2 2 0 Thiamine monophosphate synthase/TENI Tim44 PF04280.10 gi|385804641|ref|YP_005841041.1| - 0.049 13.6 0.0 0.094 12.7 0.0 1.4 1 0 0 1 1 1 0 Tim44-like domain GFO_IDH_MocA PF01408.17 gi|385804641|ref|YP_005841041.1| - 0.058 13.9 1.3 0.74 10.3 0.0 2.7 2 1 1 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold Glycos_transf_3 PF00591.16 gi|385804642|ref|YP_005841042.1| - 2.7e-92 308.7 2.9 3.4e-92 308.4 2.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|385804642|ref|YP_005841042.1| - 1e-15 57.0 1.2 1e-15 57.0 0.8 2.0 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.3 gi|385804642|ref|YP_005841042.1| - 0.055 12.9 0.0 0.14 11.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2717) LMWPc PF01451.16 gi|385804643|ref|YP_005841043.1| - 5.7e-28 97.9 0.1 6.7e-28 97.7 0.1 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase PAD_N PF08526.5 gi|385804643|ref|YP_005841043.1| - 0.066 13.2 0.1 0.084 12.9 0.1 1.2 1 0 0 1 1 1 0 Protein-arginine deiminase (PAD) N-terminal domain Fer2 PF00111.22 gi|385804644|ref|YP_005841044.1| - 3.1e-12 46.0 0.2 1.2e-11 44.1 0.0 1.9 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain DnaJ PF00226.26 gi|385804644|ref|YP_005841044.1| - 6.6e-10 38.5 0.0 1.1e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.1 gi|385804644|ref|YP_005841044.1| - 0.0029 16.9 0.0 0.0056 16.0 0.0 1.4 1 0 0 1 1 1 1 A repeated domain in UCH-protein Fer2_3 PF13085.1 gi|385804644|ref|YP_005841044.1| - 0.0084 15.9 0.1 0.018 14.8 0.1 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain CBS PF00571.23 gi|385804645|ref|YP_005841045.1| - 8e-37 124.7 9.1 4.5e-11 42.3 0.1 4.4 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.14 gi|385804645|ref|YP_005841045.1| - 0.0038 17.6 0.1 0.082 13.3 0.0 2.7 3 1 0 3 3 3 1 Sigma 54 modulation protein / S30EA ribosomal protein Surf_Ag_VNR PF07244.10 gi|385804645|ref|YP_005841045.1| - 0.014 15.8 0.0 0.097 13.1 0.0 2.2 2 0 0 2 2 2 0 Surface antigen variable number repeat Rad51 PF08423.6 gi|385804646|ref|YP_005841046.1| - 5.8e-28 97.4 0.2 1.8e-15 56.5 0.1 2.0 2 0 0 2 2 2 2 Rad51 AAA_25 PF13481.1 gi|385804646|ref|YP_005841046.1| - 3.3e-12 46.2 0.2 9.6e-12 44.7 0.1 1.8 1 1 0 1 1 1 1 AAA domain RecA PF00154.16 gi|385804646|ref|YP_005841046.1| - 2.5e-08 33.3 0.9 3.6e-08 32.8 0.3 1.5 2 1 0 2 2 2 1 recA bacterial DNA recombination protein KaiC PF06745.8 gi|385804646|ref|YP_005841046.1| - 9.8e-08 31.3 0.0 1.2e-06 27.7 0.0 2.1 1 1 0 1 1 1 1 KaiC Zot PF05707.7 gi|385804646|ref|YP_005841046.1| - 5.6e-06 25.9 0.0 6.6e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) DnaB_C PF03796.10 gi|385804646|ref|YP_005841046.1| - 6.2e-05 22.0 0.0 0.00029 19.7 0.0 2.0 3 0 0 3 3 3 1 DnaB-like helicase C terminal domain PAXNEB PF05625.6 gi|385804646|ref|YP_005841046.1| - 0.0069 15.2 0.1 0.018 13.8 0.1 1.6 2 0 0 2 2 2 1 PAXNEB protein AAA_10 PF12846.2 gi|385804646|ref|YP_005841046.1| - 0.0077 15.7 0.1 0.49 9.7 0.0 2.3 2 1 0 2 2 2 1 AAA-like domain ATP-synt_ab PF00006.20 gi|385804646|ref|YP_005841046.1| - 0.014 14.8 0.1 0.021 14.3 0.1 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_19 PF13245.1 gi|385804646|ref|YP_005841046.1| - 0.02 14.6 0.0 0.058 13.1 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_16 PF13191.1 gi|385804646|ref|YP_005841046.1| - 0.029 14.3 0.1 0.044 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|385804646|ref|YP_005841046.1| - 0.11 12.1 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase cobW PF02492.14 gi|385804646|ref|YP_005841046.1| - 0.13 11.7 0.1 14 5.0 0.0 2.8 2 1 1 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain Big_3_3 PF13750.1 gi|385804647|ref|YP_005841047.1| - 0.036 13.4 0.0 0.062 12.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) DUF460 PF04312.8 gi|385804647|ref|YP_005841047.1| - 0.066 12.7 0.3 0.14 11.6 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF460) DUF111 PF01969.12 gi|385804648|ref|YP_005841048.1| - 4.1e-131 437.3 7.6 1.1e-130 435.8 5.3 1.6 1 1 0 1 1 1 1 Protein of unknown function DUF111 DUF1510 PF07423.6 gi|385804648|ref|YP_005841048.1| - 1.3 8.3 14.2 2.1 7.6 9.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) Hid1 PF12722.2 gi|385804648|ref|YP_005841048.1| - 6.6 4.2 9.6 8.7 3.8 6.7 1.1 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein AAA PF00004.24 gi|385804649|ref|YP_005841049.1| - 4.3e-101 334.3 0.0 1.8e-49 167.2 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|385804649|ref|YP_005841049.1| - 5.8e-29 99.8 0.1 2.9e-28 97.6 0.1 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.12 gi|385804649|ref|YP_005841049.1| - 1.7e-15 56.3 0.0 8.1e-15 54.2 0.0 2.2 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.7 gi|385804649|ref|YP_005841049.1| - 3.6e-15 55.6 0.0 5.4e-07 28.9 0.0 2.8 3 0 0 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|385804649|ref|YP_005841049.1| - 7.2e-15 55.2 0.2 9.6e-05 22.5 0.1 4.4 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|385804649|ref|YP_005841049.1| - 9.7e-15 55.0 0.0 4e-07 30.1 0.0 3.4 2 1 0 2 2 2 2 AAA ATPase domain AAA_5 PF07728.9 gi|385804649|ref|YP_005841049.1| - 2.3e-14 53.2 0.5 5.8e-06 26.0 0.0 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|385804649|ref|YP_005841049.1| - 8.9e-13 48.4 0.0 1.4e-05 25.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|385804649|ref|YP_005841049.1| - 1.9e-12 48.0 0.1 0.00016 22.4 0.0 3.1 3 1 0 3 3 2 2 AAA domain TIP49 PF06068.8 gi|385804649|ref|YP_005841049.1| - 1.1e-11 44.1 0.0 2.8e-05 23.0 0.0 3.0 3 0 0 3 3 3 2 TIP49 C-terminus AAA_33 PF13671.1 gi|385804649|ref|YP_005841049.1| - 2.9e-11 43.4 0.0 8e-05 22.5 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_14 PF13173.1 gi|385804649|ref|YP_005841049.1| - 3.8e-10 39.7 0.0 0.00026 20.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|385804649|ref|YP_005841049.1| - 2.9e-09 36.5 4.3 0.0012 18.5 0.1 3.6 3 0 0 3 3 3 2 Part of AAA domain IstB_IS21 PF01695.12 gi|385804649|ref|YP_005841049.1| - 6.9e-09 35.3 0.0 0.0041 16.5 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_25 PF13481.1 gi|385804649|ref|YP_005841049.1| - 5.5e-08 32.4 5.6 0.94 8.8 0.1 4.4 2 2 1 4 4 4 3 AAA domain Zeta_toxin PF06414.7 gi|385804649|ref|YP_005841049.1| - 5.6e-08 32.1 0.5 0.0045 16.0 0.0 2.9 3 0 0 3 3 2 2 Zeta toxin AAA_18 PF13238.1 gi|385804649|ref|YP_005841049.1| - 6.4e-08 32.9 0.0 0.0073 16.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|385804649|ref|YP_005841049.1| - 6.9e-07 28.6 0.1 0.038 13.1 0.0 2.7 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|385804649|ref|YP_005841049.1| - 9.2e-07 28.9 0.2 0.014 15.3 0.0 2.7 3 0 0 3 3 2 2 AAA domain RNA_helicase PF00910.17 gi|385804649|ref|YP_005841049.1| - 1.2e-06 28.6 0.0 0.057 13.5 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Sigma54_activat PF00158.21 gi|385804649|ref|YP_005841049.1| - 2.9e-06 26.8 0.1 0.094 12.1 0.0 3.3 3 1 0 3 3 2 2 Sigma-54 interaction domain NB-ARC PF00931.17 gi|385804649|ref|YP_005841049.1| - 4.4e-06 25.7 0.0 0.036 12.9 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain PhoH PF02562.11 gi|385804649|ref|YP_005841049.1| - 6.9e-06 25.4 0.4 0.16 11.1 0.0 3.2 3 0 0 3 3 3 2 PhoH-like protein AAA_3 PF07726.6 gi|385804649|ref|YP_005841049.1| - 1.1e-05 24.9 0.0 0.15 11.6 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) KaiC PF06745.8 gi|385804649|ref|YP_005841049.1| - 1.3e-05 24.3 1.0 0.43 9.6 0.0 3.6 2 1 1 3 3 3 2 KaiC Arch_ATPase PF01637.13 gi|385804649|ref|YP_005841049.1| - 1.4e-05 24.9 0.0 0.12 12.0 0.0 3.6 2 2 1 3 3 3 1 Archaeal ATPase ABC_tran PF00005.22 gi|385804649|ref|YP_005841049.1| - 1.7e-05 25.1 0.0 0.39 11.0 0.0 2.9 2 0 0 2 2 2 2 ABC transporter Sigma54_activ_2 PF14532.1 gi|385804649|ref|YP_005841049.1| - 1.7e-05 24.9 0.0 0.3 11.1 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain DUF815 PF05673.8 gi|385804649|ref|YP_005841049.1| - 3.4e-05 22.8 0.0 0.3 9.9 0.0 2.6 2 1 0 2 2 2 2 Protein of unknown function (DUF815) DUF2075 PF09848.4 gi|385804649|ref|YP_005841049.1| - 3.9e-05 22.8 0.0 0.25 10.2 0.0 2.6 3 0 0 3 3 2 2 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.1 gi|385804649|ref|YP_005841049.1| - 4.6e-05 23.1 0.2 0.13 11.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain SKI PF01202.17 gi|385804649|ref|YP_005841049.1| - 5.4e-05 23.1 0.0 0.28 11.0 0.0 2.5 2 0 0 2 2 2 2 Shikimate kinase NACHT PF05729.7 gi|385804649|ref|YP_005841049.1| - 8.6e-05 22.2 0.1 0.26 10.9 0.0 3.5 4 0 0 4 4 4 1 NACHT domain AAA_11 PF13086.1 gi|385804649|ref|YP_005841049.1| - 0.0001 22.0 0.0 0.51 9.8 0.0 2.4 2 1 0 2 2 2 2 AAA domain Parvo_NS1 PF01057.12 gi|385804649|ref|YP_005841049.1| - 0.00016 20.6 0.1 0.2 10.4 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NTPase_1 PF03266.10 gi|385804649|ref|YP_005841049.1| - 0.00027 20.7 0.6 1.8 8.2 0.0 3.7 3 1 1 4 4 3 2 NTPase AAA_30 PF13604.1 gi|385804649|ref|YP_005841049.1| - 0.00037 20.1 0.8 0.89 9.0 0.0 3.1 3 0 0 3 3 2 2 AAA domain Bac_DnaA PF00308.13 gi|385804649|ref|YP_005841049.1| - 0.0016 18.1 0.0 2.3 7.8 0.0 3.1 3 0 0 3 3 3 1 Bacterial dnaA protein ResIII PF04851.10 gi|385804649|ref|YP_005841049.1| - 0.0016 18.2 0.0 2 8.2 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit IPT PF01745.11 gi|385804649|ref|YP_005841049.1| - 0.003 16.7 0.8 0.97 8.5 0.0 2.8 3 0 0 3 3 3 1 Isopentenyl transferase UPF0079 PF02367.12 gi|385804649|ref|YP_005841049.1| - 0.0031 17.1 0.1 1.6 8.3 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 ATP-synt_ab PF00006.20 gi|385804649|ref|YP_005841049.1| - 0.0044 16.5 0.0 1.5 8.3 0.0 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain Cytidylate_kin2 PF13189.1 gi|385804649|ref|YP_005841049.1| - 0.0052 16.6 0.0 1.3 8.8 0.0 2.3 2 0 0 2 2 2 1 Cytidylate kinase-like family KAP_NTPase PF07693.9 gi|385804649|ref|YP_005841049.1| - 0.0068 15.4 0.1 2.8 6.8 0.0 3.3 2 2 0 3 3 3 1 KAP family P-loop domain T2SE PF00437.15 gi|385804649|ref|YP_005841049.1| - 0.015 14.2 0.0 4.6 6.0 0.0 2.5 2 0 0 2 2 2 0 Type II/IV secretion system protein Torsin PF06309.6 gi|385804649|ref|YP_005841049.1| - 0.016 15.1 0.0 3.8 7.4 0.0 2.7 3 0 0 3 3 2 0 Torsin CPT PF07931.7 gi|385804649|ref|YP_005841049.1| - 0.019 14.5 0.0 3.1 7.3 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein KTI12 PF08433.5 gi|385804649|ref|YP_005841049.1| - 0.021 14.0 0.0 11 5.1 0.0 3.0 3 0 0 3 3 3 0 Chromatin associated protein KTI12 Viral_helicase1 PF01443.13 gi|385804649|ref|YP_005841049.1| - 0.04 13.4 0.0 3.5 7.0 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AFG1_ATPase PF03969.11 gi|385804649|ref|YP_005841049.1| - 0.041 12.6 0.1 1.8 7.2 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase Guanylate_kin PF00625.16 gi|385804649|ref|YP_005841049.1| - 0.058 12.8 0.2 36 3.7 0.0 3.5 2 1 1 3 3 3 0 Guanylate kinase PUA PF01472.15 gi|385804650|ref|YP_005841050.1| - 5.9e-17 61.1 2.6 9.7e-17 60.4 1.8 1.4 1 0 0 1 1 1 1 PUA domain UL11 PF11094.3 gi|385804650|ref|YP_005841050.1| - 0.86 9.4 3.4 0.9 9.4 0.1 2.6 3 0 0 3 3 3 0 Membrane-associated tegument protein DUF2387 PF09526.5 gi|385804651|ref|YP_005841051.1| - 0.052 13.4 0.3 0.095 12.6 0.2 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) BIR PF00653.16 gi|385804651|ref|YP_005841051.1| - 0.11 12.9 0.8 0.19 12.1 0.5 1.4 1 0 0 1 1 1 0 Inhibitor of Apoptosis domain zf-B_box PF00643.19 gi|385804651|ref|YP_005841051.1| - 0.18 11.6 2.4 0.8 9.6 0.5 2.2 2 0 0 2 2 2 0 B-box zinc finger Ribosomal_S27e PF01667.12 gi|385804651|ref|YP_005841051.1| - 0.31 10.6 2.0 1.1 8.7 0.4 2.1 2 0 0 2 2 2 0 Ribosomal protein S27 Tnp_zf-ribbon_2 PF13842.1 gi|385804651|ref|YP_005841051.1| - 1.8 9.0 4.9 4.3 7.8 0.4 2.3 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon DZR PF12773.2 gi|385804651|ref|YP_005841051.1| - 9.6 6.1 7.7 4.3 7.2 2.8 2.2 2 1 0 2 2 2 0 Double zinc ribbon RNB PF00773.14 gi|385804652|ref|YP_005841052.1| - 8.2e-81 271.7 0.4 1.4e-50 172.4 0.2 2.4 1 1 1 2 2 2 2 RNB domain DUF982 PF06169.7 gi|385804652|ref|YP_005841052.1| - 0.023 14.4 0.0 0.051 13.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF982) FF PF01846.14 gi|385804652|ref|YP_005841052.1| - 0.31 11.0 2.1 12 5.9 0.0 3.8 4 0 0 4 4 4 0 FF domain Prok-RING_1 PF14446.1 gi|385804653|ref|YP_005841053.1| - 0.0067 16.1 0.6 0.012 15.3 0.4 1.4 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-P11 PF03854.9 gi|385804653|ref|YP_005841053.1| - 0.14 11.6 0.2 0.2 11.1 0.2 1.4 1 0 0 1 1 1 0 P-11 zinc finger Peripla_BP_6 PF13458.1 gi|385804654|ref|YP_005841054.1| - 1.4e-50 172.5 2.3 1.8e-50 172.2 1.6 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|385804654|ref|YP_005841054.1| - 7.8e-19 67.6 0.5 3.4e-18 65.5 0.3 1.8 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|385804654|ref|YP_005841054.1| - 6.4e-17 61.3 0.2 1.1e-16 60.5 0.1 1.3 1 1 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.4 gi|385804654|ref|YP_005841054.1| - 0.025 14.5 5.8 0.14 12.2 4.0 2.3 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_2 PF02653.11 gi|385804655|ref|YP_005841055.1| - 1.5e-40 138.8 42.5 1.8e-40 138.6 29.5 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Internalin_N PF12354.3 gi|385804655|ref|YP_005841055.1| - 6.5 6.4 7.7 4.2 7.0 0.9 3.3 2 1 0 2 2 2 0 Bacterial adhesion/invasion protein N terminal BPD_transp_2 PF02653.11 gi|385804656|ref|YP_005841056.1| - 1.4e-35 122.5 36.7 2e-35 122.0 25.5 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|385804657|ref|YP_005841057.1| - 8e-29 100.6 0.0 1.1e-28 100.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385804657|ref|YP_005841057.1| - 4.5e-12 46.5 2.0 9.2e-09 35.6 1.4 2.1 1 1 0 1 1 1 1 AAA domain BCA_ABC_TP_C PF12399.3 gi|385804657|ref|YP_005841057.1| - 2.5e-11 42.9 0.1 5.5e-11 41.8 0.1 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.1 gi|385804657|ref|YP_005841057.1| - 6.8e-06 26.5 0.2 9.8e-06 26.0 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|385804657|ref|YP_005841057.1| - 4.6e-05 22.8 0.0 9.2e-05 21.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|385804657|ref|YP_005841057.1| - 6.9e-05 22.7 0.0 0.00014 21.8 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase SMC_N PF02463.14 gi|385804657|ref|YP_005841057.1| - 0.00013 21.2 0.5 0.0016 17.6 0.3 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|385804657|ref|YP_005841057.1| - 0.0011 18.1 0.0 0.0017 17.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|385804657|ref|YP_005841057.1| - 0.0014 17.7 0.0 0.66 8.9 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|385804657|ref|YP_005841057.1| - 0.0045 16.4 0.4 0.028 13.8 0.2 1.9 1 1 0 1 1 1 1 AAA-like domain FeoB_N PF02421.13 gi|385804657|ref|YP_005841057.1| - 0.0058 15.9 1.1 0.31 10.2 0.1 3.0 3 0 0 3 3 3 1 Ferrous iron transport protein B AAA_16 PF13191.1 gi|385804657|ref|YP_005841057.1| - 0.0098 15.8 0.0 0.016 15.2 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain RNA_helicase PF00910.17 gi|385804657|ref|YP_005841057.1| - 0.025 14.7 0.0 0.054 13.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Miff PF05644.6 gi|385804657|ref|YP_005841057.1| - 0.042 13.4 0.0 0.071 12.7 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial and peroxisomal fission factor Mff Mg_chelatase PF01078.16 gi|385804657|ref|YP_005841057.1| - 0.058 12.5 0.0 0.15 11.2 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI T2SE PF00437.15 gi|385804657|ref|YP_005841057.1| - 0.061 12.2 0.1 0.23 10.2 0.0 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_13 PF13166.1 gi|385804657|ref|YP_005841057.1| - 0.066 11.6 0.0 0.39 9.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|385804657|ref|YP_005841057.1| - 0.071 11.8 0.0 0.13 10.9 0.0 1.4 1 0 0 1 1 1 0 ArgK protein AAA_30 PF13604.1 gi|385804657|ref|YP_005841057.1| - 0.085 12.4 0.0 0.32 10.5 0.0 1.8 2 1 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|385804657|ref|YP_005841057.1| - 0.13 11.8 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Arch_ATPase PF01637.13 gi|385804657|ref|YP_005841057.1| - 0.14 11.8 0.0 0.77 9.4 0.0 1.9 2 1 1 3 3 3 0 Archaeal ATPase ABC_tran PF00005.22 gi|385804658|ref|YP_005841058.1| - 2.9e-33 115.0 0.0 4e-33 114.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385804658|ref|YP_005841058.1| - 1.6e-16 61.1 0.4 7.6e-08 32.6 0.1 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|385804658|ref|YP_005841058.1| - 1.3e-06 27.8 0.3 7.4e-06 25.3 0.2 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|385804658|ref|YP_005841058.1| - 7.9e-05 22.1 0.1 0.00018 20.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|385804658|ref|YP_005841058.1| - 0.00021 21.7 0.3 0.00035 20.9 0.2 1.3 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|385804658|ref|YP_005841058.1| - 0.00025 20.2 0.0 0.00043 19.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|385804658|ref|YP_005841058.1| - 0.00034 19.7 0.2 0.0062 15.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|385804658|ref|YP_005841058.1| - 0.0015 18.6 0.1 0.0087 16.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|385804658|ref|YP_005841058.1| - 0.0035 16.8 0.1 0.0078 15.6 0.1 1.5 1 0 0 1 1 1 1 AAA-like domain AAA PF00004.24 gi|385804658|ref|YP_005841058.1| - 0.004 17.3 0.0 0.085 13.0 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|385804658|ref|YP_005841058.1| - 0.0046 16.9 0.0 0.0064 16.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|385804658|ref|YP_005841058.1| - 0.0075 15.6 0.0 0.016 14.6 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_17 PF13207.1 gi|385804658|ref|YP_005841058.1| - 0.0091 16.8 0.0 0.016 16.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|385804658|ref|YP_005841058.1| - 0.01 15.7 0.0 0.016 15.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|385804658|ref|YP_005841058.1| - 0.013 15.1 0.0 0.027 14.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) MutS_V PF00488.16 gi|385804658|ref|YP_005841058.1| - 0.019 14.3 0.0 0.034 13.5 0.0 1.3 1 0 0 1 1 1 0 MutS domain V AAA_14 PF13173.1 gi|385804658|ref|YP_005841058.1| - 0.025 14.4 0.0 0.052 13.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|385804658|ref|YP_005841058.1| - 0.027 14.1 0.2 0.06 12.9 0.0 1.7 2 0 0 2 2 1 0 NACHT domain ATP-synt_ab PF00006.20 gi|385804658|ref|YP_005841058.1| - 0.029 13.8 0.0 0.035 13.6 0.0 1.1 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain MMR_HSR1 PF01926.18 gi|385804658|ref|YP_005841058.1| - 0.046 13.6 0.0 0.065 13.1 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase RNA_helicase PF00910.17 gi|385804658|ref|YP_005841058.1| - 0.057 13.5 0.0 0.099 12.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.17 gi|385804658|ref|YP_005841058.1| - 0.058 12.2 0.0 0.074 11.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.1 gi|385804658|ref|YP_005841058.1| - 0.07 12.7 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|385804658|ref|YP_005841058.1| - 0.08 12.6 0.1 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_13 PF13166.1 gi|385804658|ref|YP_005841058.1| - 0.11 10.9 0.0 0.14 10.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|385804658|ref|YP_005841058.1| - 0.11 12.0 0.1 0.17 11.3 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein SbcCD_C PF13558.1 gi|385804658|ref|YP_005841058.1| - 0.14 12.1 0.2 2.5 8.0 0.2 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Rad17 PF03215.10 gi|385804658|ref|YP_005841058.1| - 0.17 10.5 0.0 0.19 10.4 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein ADH_N PF08240.7 gi|385804659|ref|YP_005841059.1| - 7.4e-27 93.2 1.3 1.4e-26 92.3 0.7 1.6 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|385804659|ref|YP_005841059.1| - 3.8e-11 42.6 0.1 7e-11 41.7 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_assoc PF13823.1 gi|385804659|ref|YP_005841059.1| - 2.4e-08 33.4 0.5 6.2e-08 32.1 0.4 1.8 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated Methyltransf_18 PF12847.2 gi|385804659|ref|YP_005841059.1| - 0.0002 21.8 0.0 0.00065 20.2 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Shikimate_DH PF01488.15 gi|385804659|ref|YP_005841059.1| - 0.026 14.6 0.1 0.5 10.4 0.0 2.2 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase HI0933_like PF03486.9 gi|385804659|ref|YP_005841059.1| - 0.065 11.6 0.1 0.25 9.7 0.1 1.8 2 0 0 2 2 2 0 HI0933-like protein zf-DBF PF07535.7 gi|385804659|ref|YP_005841059.1| - 0.76 9.5 4.2 1.4 8.6 2.9 1.4 1 0 0 1 1 1 0 DBF zinc finger cobW PF02492.14 gi|385804661|ref|YP_005841061.1| - 4.4e-49 166.3 0.0 5.9e-49 165.9 0.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.9 gi|385804661|ref|YP_005841061.1| - 7.3e-23 80.1 0.0 1.6e-22 79.0 0.0 1.6 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain T2SE PF00437.15 gi|385804661|ref|YP_005841061.1| - 0.00059 18.8 0.1 0.00094 18.1 0.1 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein GTP_EFTU PF00009.22 gi|385804661|ref|YP_005841061.1| - 0.00064 19.1 0.0 0.41 10.0 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_22 PF13401.1 gi|385804661|ref|YP_005841061.1| - 0.0014 18.7 0.0 0.0027 17.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|385804661|ref|YP_005841061.1| - 0.0026 17.4 0.0 0.046 13.4 0.0 2.3 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|385804661|ref|YP_005841061.1| - 0.0063 16.2 0.0 0.01 15.5 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_10 PF12846.2 gi|385804661|ref|YP_005841061.1| - 0.0069 15.8 0.0 0.012 15.0 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain DUF258 PF03193.11 gi|385804661|ref|YP_005841061.1| - 0.0081 15.3 0.0 0.013 14.7 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function, DUF258 UPF0079 PF02367.12 gi|385804661|ref|YP_005841061.1| - 0.0084 15.7 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|385804661|ref|YP_005841061.1| - 0.01 15.6 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|385804661|ref|YP_005841061.1| - 0.012 15.3 0.1 0.029 14.1 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_16 PF13191.1 gi|385804661|ref|YP_005841061.1| - 0.012 15.5 0.0 0.036 14.0 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|385804661|ref|YP_005841061.1| - 0.017 15.0 0.0 0.068 13.1 0.0 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase TrwB_AAD_bind PF10412.4 gi|385804661|ref|YP_005841061.1| - 0.018 13.6 0.0 0.027 13.1 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain ABC_tran PF00005.22 gi|385804661|ref|YP_005841061.1| - 0.02 15.1 0.0 0.037 14.3 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_14 PF13173.1 gi|385804661|ref|YP_005841061.1| - 0.025 14.4 0.0 0.051 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|385804661|ref|YP_005841061.1| - 0.026 15.3 0.1 0.052 14.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|385804661|ref|YP_005841061.1| - 0.026 14.4 0.0 0.057 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|385804661|ref|YP_005841061.1| - 0.029 14.6 0.0 0.077 13.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|385804661|ref|YP_005841061.1| - 0.037 13.1 0.0 0.066 12.3 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_29 PF13555.1 gi|385804661|ref|YP_005841061.1| - 0.051 13.1 0.0 0.12 11.8 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Guanylate_kin PF00625.16 gi|385804661|ref|YP_005841061.1| - 0.064 12.6 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Guanylate kinase AAA_23 PF13476.1 gi|385804661|ref|YP_005841061.1| - 0.076 13.3 0.0 0.14 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|385804661|ref|YP_005841061.1| - 0.11 11.9 0.0 0.56 9.7 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein NACHT PF05729.7 gi|385804661|ref|YP_005841061.1| - 0.13 11.8 0.0 0.69 9.5 0.0 2.0 2 0 0 2 2 2 0 NACHT domain NTPase_1 PF03266.10 gi|385804661|ref|YP_005841061.1| - 0.18 11.5 0.0 0.28 10.8 0.0 1.3 1 0 0 1 1 1 0 NTPase TFIIS_C PF01096.13 gi|385804662|ref|YP_005841062.1| - 1.9e-17 62.6 2.4 1.9e-17 62.6 1.7 3.0 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|385804662|ref|YP_005841062.1| - 8.2e-08 31.8 1.9 8.2e-08 31.8 1.3 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|385804662|ref|YP_005841062.1| - 3.9e-06 26.5 9.8 0.0001 22.0 0.7 2.5 2 1 0 2 2 2 2 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|385804662|ref|YP_005841062.1| - 0.00021 20.9 11.0 0.0046 16.5 1.0 2.9 2 1 1 3 3 3 2 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.6 gi|385804662|ref|YP_005841062.1| - 0.01 15.3 0.7 0.01 15.3 0.5 3.0 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|385804662|ref|YP_005841062.1| - 0.014 14.6 14.5 3.6 6.9 3.9 4.2 3 1 0 3 3 3 0 TFIIB zinc-binding PHF5 PF03660.9 gi|385804662|ref|YP_005841062.1| - 0.021 14.8 1.8 0.46 10.5 0.2 2.2 2 0 0 2 2 2 0 PHF5-like protein Zn_Tnp_IS1595 PF12760.2 gi|385804662|ref|YP_005841062.1| - 0.024 14.4 0.5 0.024 14.4 0.3 2.9 2 1 1 3 3 3 0 Transposase zinc-ribbon domain Prok-RING_1 PF14446.1 gi|385804662|ref|YP_005841062.1| - 0.042 13.5 2.4 0.042 13.5 1.6 3.0 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 Ribosomal_L44 PF00935.14 gi|385804662|ref|YP_005841062.1| - 0.048 13.6 2.7 2.6 8.1 0.1 3.2 3 1 0 3 3 3 0 Ribosomal protein L44 HypA PF01155.14 gi|385804662|ref|YP_005841062.1| - 0.052 13.2 8.0 2.2 8.0 1.2 2.5 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Auto_anti-p27 PF06677.7 gi|385804662|ref|YP_005841062.1| - 0.053 13.2 3.5 0.053 13.2 2.4 2.7 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Nudix_N_2 PF14803.1 gi|385804662|ref|YP_005841062.1| - 0.067 12.8 10.2 3.6 7.3 0.1 4.1 4 0 0 4 4 4 0 Nudix N-terminal RRN7 PF11781.3 gi|385804662|ref|YP_005841062.1| - 0.07 12.6 11.5 8.3 6.0 0.4 4.1 3 1 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-trcl PF13451.1 gi|385804662|ref|YP_005841062.1| - 0.1 12.2 10.1 1 9.0 0.1 4.0 4 0 0 4 4 4 0 Probable zinc-binding domain PhnA_Zn_Ribbon PF08274.7 gi|385804662|ref|YP_005841062.1| - 0.11 12.3 0.1 0.11 12.3 0.1 3.9 4 0 0 4 4 4 0 PhnA Zinc-Ribbon Cytochrome_C554 PF13435.1 gi|385804662|ref|YP_005841062.1| - 0.11 12.5 1.9 0.14 12.1 1.0 1.5 1 1 0 1 1 1 0 Cytochrome c554 and c-prime eRF1_3 PF03465.10 gi|385804662|ref|YP_005841062.1| - 0.15 12.3 0.5 0.86 9.8 0.1 1.9 2 0 0 2 2 2 0 eRF1 domain 3 zinc_ribbon_2 PF13240.1 gi|385804662|ref|YP_005841062.1| - 0.22 11.0 15.5 1 8.9 2.0 4.1 3 1 0 3 3 3 0 zinc-ribbon domain zf-piccolo PF05715.8 gi|385804662|ref|YP_005841062.1| - 0.24 11.4 10.0 0.51 10.3 0.1 3.4 2 2 1 3 3 3 0 Piccolo Zn-finger zf-ribbon_3 PF13248.1 gi|385804662|ref|YP_005841062.1| - 0.4 9.9 16.1 0.059 12.5 1.5 3.7 4 1 0 4 4 3 0 zinc-ribbon domain DUF2054 PF10218.4 gi|385804662|ref|YP_005841062.1| - 0.4 10.5 2.8 3.7 7.3 0.1 2.0 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2054) C1_1 PF00130.17 gi|385804662|ref|YP_005841062.1| - 0.53 10.0 10.5 0.27 10.9 1.2 2.8 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) YhfH PF14149.1 gi|385804662|ref|YP_005841062.1| - 0.58 9.9 14.6 3.8 7.3 0.0 4.4 4 0 0 4 4 4 0 YhfH-like protein zinc_ribbon_4 PF13717.1 gi|385804662|ref|YP_005841062.1| - 0.69 9.6 11.1 1.4 8.6 0.3 3.6 4 0 0 4 4 4 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|385804662|ref|YP_005841062.1| - 0.7 9.5 10.8 1.4 8.5 0.2 3.6 4 0 0 4 4 4 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|385804662|ref|YP_005841062.1| - 1.2 8.6 12.1 7.5 6.1 0.1 3.7 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-C2HC5 PF06221.8 gi|385804662|ref|YP_005841062.1| - 1.3 8.8 5.6 1.1 9.0 0.5 2.6 3 0 0 3 3 3 0 Putative zinc finger motif, C2HC5-type zinc-ribbons_6 PF07191.7 gi|385804662|ref|YP_005841062.1| - 1.5 8.6 7.3 0.65 9.8 0.3 2.7 2 1 0 2 2 2 0 zinc-ribbons Mcm10 PF09332.6 gi|385804662|ref|YP_005841062.1| - 1.9 7.7 7.5 1.1 8.5 3.7 1.9 1 1 0 1 1 1 0 Mcm10 replication factor Zn-ribbon_8 PF09723.5 gi|385804662|ref|YP_005841062.1| - 2.4 8.2 15.9 11 6.0 0.4 4.0 2 2 0 3 3 3 0 Zinc ribbon domain DUF3797 PF12677.2 gi|385804662|ref|YP_005841062.1| - 3 7.5 9.3 9 6.0 0.0 3.5 3 1 1 4 4 4 0 Domain of unknown function (DUF3797) DUF702 PF05142.7 gi|385804662|ref|YP_005841062.1| - 3 7.9 6.6 39 4.3 0.4 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF702) UPF0547 PF10571.4 gi|385804662|ref|YP_005841062.1| - 4.1 7.2 14.1 7.1 6.4 0.2 3.9 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 IBR PF01485.16 gi|385804662|ref|YP_005841062.1| - 4.6 7.1 12.2 6.6 6.6 1.3 3.2 2 1 0 2 2 2 0 IBR domain Lar_restr_allev PF14354.1 gi|385804662|ref|YP_005841062.1| - 6.3 7.1 13.5 4.3 7.7 1.4 3.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar GATA PF00320.22 gi|385804662|ref|YP_005841062.1| - 6.4 6.2 11.3 5.4 6.4 0.2 3.7 3 1 1 4 4 4 0 GATA zinc finger A2L_zn_ribbon PF08792.5 gi|385804662|ref|YP_005841062.1| - 7.1 6.2 17.9 8.2 6.0 2.7 4.0 3 1 0 3 3 3 0 A2L zinc ribbon domain Lar_restr_allev PF14354.1 gi|385804666|ref|YP_005841066.1| - 0.017 15.4 0.1 0.043 14.1 0.1 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-Di19 PF05605.7 gi|385804666|ref|YP_005841066.1| - 0.07 13.2 0.8 0.12 12.5 0.6 1.3 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding DUF3797 PF12677.2 gi|385804666|ref|YP_005841066.1| - 0.17 11.5 0.6 13 5.4 0.0 3.1 4 0 0 4 4 4 0 Domain of unknown function (DUF3797) zf-dskA_traR PF01258.12 gi|385804667|ref|YP_005841067.1| - 0.014 15.1 0.6 0.29 10.8 0.2 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger RNA_POL_M_15KD PF02150.11 gi|385804667|ref|YP_005841067.1| - 0.022 14.4 0.2 0.95 9.2 0.0 2.0 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Lar_restr_allev PF14354.1 gi|385804667|ref|YP_005841067.1| - 0.09 13.0 2.1 0.16 12.3 1.5 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.2 gi|385804667|ref|YP_005841067.1| - 0.097 12.5 1.0 0.33 10.8 0.7 1.8 1 1 0 1 1 1 0 Double zinc ribbon FANCL_C PF11793.3 gi|385804667|ref|YP_005841067.1| - 0.099 12.6 0.2 1.6 8.7 0.0 2.0 2 0 0 2 2 2 0 FANCL C-terminal domain UPF0547 PF10571.4 gi|385804667|ref|YP_005841067.1| - 1.7 8.4 7.2 1.4 8.7 0.3 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF4027 PF13219.1 gi|385804668|ref|YP_005841068.1| - 0.76 9.2 3.1 1.8 8.0 2.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4027) DUF1469 PF07332.6 gi|385804668|ref|YP_005841068.1| - 6.6 6.4 11.8 4.1 7.1 2.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1469) FUSC PF04632.7 gi|385804669|ref|YP_005841069.1| - 0.0084 14.5 0.9 0.0084 14.5 0.6 1.0 1 0 0 1 1 1 1 Fusaric acid resistance protein family Polysacc_synt_3 PF13440.1 gi|385804671|ref|YP_005841071.1| - 0.01 15.3 2.2 0.012 15.0 1.6 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein DUF3353 PF11833.3 gi|385804671|ref|YP_005841071.1| - 0.037 13.4 2.5 0.042 13.2 1.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) Phosphorylase PF00343.15 gi|385804672|ref|YP_005841072.1| - 0.0035 15.3 0.0 0.0049 14.8 0.0 1.1 1 0 0 1 1 1 1 Carbohydrate phosphorylase Vps55 PF04133.9 gi|385804675|ref|YP_005841075.1| - 0.059 13.1 0.1 0.062 13.0 0.1 1.0 1 0 0 1 1 1 0 Vacuolar protein sorting 55 DUF2207 PF09972.4 gi|385804675|ref|YP_005841075.1| - 0.068 11.7 0.4 0.067 11.7 0.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3098 PF11297.3 gi|385804675|ref|YP_005841075.1| - 0.078 12.6 0.4 0.33 10.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3098) GHMP_kinases_N PF00288.21 gi|385804678|ref|YP_005841078.1| - 8.8e-07 28.8 0.2 1.8e-06 27.9 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|385804678|ref|YP_005841078.1| - 0.0085 16.2 0.0 0.019 15.1 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal Keratin PF02422.11 gi|385804678|ref|YP_005841078.1| - 0.17 11.8 3.8 0.53 10.2 2.6 1.9 1 1 0 1 1 1 0 Keratin Cupin_2 PF07883.6 gi|385804679|ref|YP_005841079.1| - 1.3e-11 43.7 0.3 1.9e-11 43.2 0.2 1.2 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.13 gi|385804679|ref|YP_005841079.1| - 0.0024 17.4 0.0 0.0029 17.2 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase DUF1637 PF07847.7 gi|385804679|ref|YP_005841079.1| - 0.025 13.9 0.0 0.034 13.5 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1637) Cupin_3 PF05899.7 gi|385804679|ref|YP_005841079.1| - 0.14 11.5 0.1 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) TrkA_N PF02254.13 gi|385804680|ref|YP_005841080.1| - 3.9e-05 23.6 0.2 4.8e-05 23.3 0.2 1.2 1 0 0 1 1 1 1 TrkA-N domain GMP_synt_C PF00958.17 gi|385804681|ref|YP_005841081.1| - 1.2e-29 101.8 0.1 2.8e-29 100.6 0.0 1.6 2 0 0 2 2 2 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|385804681|ref|YP_005841081.1| - 5.6e-09 35.2 0.1 2.6e-08 33.0 0.0 1.9 1 1 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|385804681|ref|YP_005841081.1| - 1.5e-05 23.7 0.0 0.0006 18.4 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|385804681|ref|YP_005841081.1| - 0.0011 18.5 0.1 0.0043 16.5 0.0 1.8 2 1 0 2 2 2 1 Asparagine synthase PAPS_reduct PF01507.14 gi|385804681|ref|YP_005841081.1| - 0.0056 16.5 0.0 0.0092 15.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.8 gi|385804681|ref|YP_005841081.1| - 0.021 14.1 0.1 0.084 12.1 0.0 1.7 1 1 0 2 2 2 0 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|385804681|ref|YP_005841081.1| - 0.023 14.1 0.0 0.053 12.9 0.0 1.7 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) CTP_synth_N PF06418.9 gi|385804682|ref|YP_005841082.1| - 1.9e-126 420.8 0.1 2.7e-126 420.2 0.1 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|385804682|ref|YP_005841082.1| - 4.6e-47 159.9 0.0 8.3e-47 159.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|385804682|ref|YP_005841082.1| - 1.9e-09 37.3 0.0 5.3e-09 35.8 0.0 1.8 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|385804682|ref|YP_005841082.1| - 1.1e-07 31.4 0.0 2.8e-07 30.1 0.0 1.7 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Glyco_hydro_3_C PF01915.17 gi|385804682|ref|YP_005841082.1| - 0.12 11.8 0.1 2 7.8 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolase family 3 C-terminal domain DUF2892 PF11127.3 gi|385804683|ref|YP_005841083.1| - 4.3e-10 39.2 1.5 4.8e-10 39.1 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) PEPcase PF00311.12 gi|385804684|ref|YP_005841084.1| - 7.2e-242 804.6 0.0 9.6e-242 804.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.1 gi|385804684|ref|YP_005841084.1| - 0.00053 18.4 0.0 0.00096 17.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase AlkA_N PF06029.6 gi|385804684|ref|YP_005841084.1| - 0.00067 19.6 1.0 0.21 11.6 0.1 2.7 2 0 0 2 2 2 2 AlkA N-terminal domain Rieske PF00355.21 gi|385804685|ref|YP_005841085.1| - 6.3e-08 32.0 0.1 1.1e-07 31.2 0.1 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain ThiS PF02597.15 gi|385804686|ref|YP_005841086.1| - 8e-16 58.2 0.0 1.2e-15 57.6 0.0 1.3 1 0 0 1 1 1 1 ThiS family STN PF07660.9 gi|385804686|ref|YP_005841086.1| - 0.044 13.3 0.0 0.074 12.6 0.0 1.4 1 0 0 1 1 1 0 Secretin and TonB N terminus short domain Ub-Mut7C PF14451.1 gi|385804686|ref|YP_005841086.1| - 0.14 11.7 0.1 0.92 9.0 0.0 2.1 2 1 0 2 2 2 0 Mut7-C ubiquitin PNP_UDP_1 PF01048.15 gi|385804688|ref|YP_005841088.1| - 1.1e-45 155.4 6.0 1.2e-45 155.3 4.2 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily GFO_IDH_MocA PF01408.17 gi|385804689|ref|YP_005841089.1| - 3.6e-13 50.0 0.2 1.1e-12 48.5 0.2 1.8 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|385804689|ref|YP_005841089.1| - 2e-08 34.0 0.0 4.4e-08 32.9 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Sulfatase PF00884.18 gi|385804690|ref|YP_005841090.1| - 2.2e-36 125.6 0.3 3.1e-36 125.1 0.2 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|385804690|ref|YP_005841090.1| - 6.4e-13 48.7 1.2 1.5e-11 44.2 0.9 2.3 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|385804690|ref|YP_005841090.1| - 1.1e-05 24.1 0.0 2.6e-05 22.8 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF229) DUF1501 PF07394.7 gi|385804690|ref|YP_005841090.1| - 0.025 13.4 0.0 0.041 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1501) HTH_1 PF00126.22 gi|385804690|ref|YP_005841090.1| - 0.063 13.0 0.5 0.19 11.5 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF63 PF01889.12 gi|385804691|ref|YP_005841091.1| - 8.4e-17 62.1 12.6 1.1e-16 61.7 8.7 1.1 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DeoC PF01791.4 gi|385804692|ref|YP_005841092.1| - 9.1e-35 120.0 3.1 1e-34 119.8 2.2 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase His_biosynth PF00977.16 gi|385804692|ref|YP_005841092.1| - 0.0076 15.5 0.2 0.028 13.6 0.0 1.9 2 0 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.12 gi|385804692|ref|YP_005841092.1| - 0.18 11.0 1.9 1.5 7.9 0.1 2.3 1 1 0 2 2 2 0 PcrB family Cation_efflux PF01545.16 gi|385804693|ref|YP_005841093.1| - 1.7e-56 191.3 1.8 2e-56 191.2 1.3 1.0 1 0 0 1 1 1 1 Cation efflux family HIT PF01230.18 gi|385804694|ref|YP_005841094.1| - 3.3e-10 40.3 0.0 7.6e-10 39.2 0.0 1.6 2 0 0 2 2 2 1 HIT domain CwfJ_C_1 PF04677.10 gi|385804694|ref|YP_005841094.1| - 0.00089 18.9 0.0 0.0014 18.2 0.0 1.4 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.3 gi|385804694|ref|YP_005841094.1| - 0.0046 17.1 0.0 0.013 15.7 0.0 1.7 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding Peptidase_M24 PF00557.19 gi|385804695|ref|YP_005841095.1| - 7.4e-46 156.3 0.8 9.4e-46 155.9 0.6 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Metallophos PF00149.23 gi|385804696|ref|YP_005841096.1| - 1.2e-13 50.9 0.7 4.1e-13 49.1 0.5 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|385804696|ref|YP_005841096.1| - 9.4e-10 38.5 0.0 1.3e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|385804696|ref|YP_005841096.1| - 0.003 16.7 0.0 0.0043 16.2 0.0 1.2 1 0 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily Gag_spuma PF03276.9 gi|385804697|ref|YP_005841097.1| - 0.00069 18.0 0.3 0.00069 18.0 0.2 1.1 1 0 0 1 1 1 1 Spumavirus gag protein Shisa PF13908.1 gi|385804697|ref|YP_005841097.1| - 0.0011 19.1 0.4 0.0011 19.1 0.3 1.3 2 0 0 2 2 2 1 Wnt and FGF inhibitory regulator Mem_trans PF03547.13 gi|385804697|ref|YP_005841097.1| - 0.033 12.5 1.0 0.052 11.8 0.7 1.4 1 1 0 1 1 1 0 Membrane transport protein Zip PF02535.17 gi|385804697|ref|YP_005841097.1| - 0.05 12.6 0.1 0.099 11.6 0.0 1.6 1 1 0 1 1 1 0 ZIP Zinc transporter Peroxin-13_N PF04088.8 gi|385804697|ref|YP_005841097.1| - 0.068 13.1 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Peroxin 13, N-terminal region DUF3592 PF12158.3 gi|385804697|ref|YP_005841097.1| - 0.17 11.6 0.1 0.17 11.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3592) CD20 PF04103.10 gi|385804697|ref|YP_005841097.1| - 0.17 11.8 6.9 0.28 11.0 4.8 1.5 1 1 0 1 1 1 0 CD20-like family OAD_gamma PF04277.8 gi|385804697|ref|YP_005841097.1| - 1.5 9.2 3.6 1.1 9.6 0.6 2.2 2 1 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain DSBA PF01323.15 gi|385804698|ref|YP_005841098.1| - 1.8e-25 89.6 0.1 2.6e-25 89.1 0.1 1.3 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_2 PF13098.1 gi|385804698|ref|YP_005841098.1| - 3.3e-07 30.4 0.3 1.9e-05 24.8 0.2 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_4 PF13462.1 gi|385804698|ref|YP_005841098.1| - 0.00013 22.0 2.3 0.0097 15.9 1.6 2.1 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_5 PF13743.1 gi|385804698|ref|YP_005841098.1| - 0.031 13.8 0.5 0.78 9.2 0.0 2.3 2 1 0 2 2 2 0 Thioredoxin Suppressor_APC PF11414.3 gi|385804698|ref|YP_005841098.1| - 0.14 11.9 1.4 0.32 10.8 1.0 1.5 1 0 0 1 1 1 0 Adenomatous polyposis coli tumour suppressor protein Iso_dh PF00180.15 gi|385804699|ref|YP_005841099.1| - 1.2e-106 356.6 0.0 5.5e-106 354.4 0.0 1.8 1 1 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DUF2314 PF10077.4 gi|385804699|ref|YP_005841099.1| - 0.079 13.0 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2314) DUF2088 PF09861.4 gi|385804700|ref|YP_005841100.1| - 2.1e-08 33.4 0.2 3.6e-08 32.6 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) Zn-ribbon_8 PF09723.5 gi|385804701|ref|YP_005841101.1| - 0.036 14.0 0.9 0.071 13.0 0.6 1.5 1 0 0 1 1 1 0 Zinc ribbon domain zf-Di19 PF05605.7 gi|385804701|ref|YP_005841101.1| - 0.037 14.1 0.0 0.064 13.3 0.0 1.4 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding OrfB_Zn_ribbon PF07282.6 gi|385804701|ref|YP_005841101.1| - 0.092 12.4 0.1 0.28 10.8 0.1 1.9 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DUF2072 PF09845.4 gi|385804701|ref|YP_005841101.1| - 0.13 12.1 0.2 0.21 11.4 0.1 1.5 1 1 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) HypA PF01155.14 gi|385804701|ref|YP_005841101.1| - 0.14 11.8 0.5 0.22 11.2 0.3 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family FYDLN_acid PF09538.5 gi|385804701|ref|YP_005841101.1| - 0.37 11.3 3.6 0.75 10.3 2.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zf-RING_3 PF14369.1 gi|385804701|ref|YP_005841101.1| - 6.1 6.9 7.4 0.32 11.0 1.3 1.7 2 0 0 2 2 2 0 zinc-finger HMG-CoA_red PF00368.13 gi|385804702|ref|YP_005841102.1| - 6.7e-137 456.1 8.9 7.8e-137 455.8 6.2 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DUF1522 PF07482.6 gi|385804702|ref|YP_005841102.1| - 5.7 7.1 11.8 2.9 8.0 1.6 3.3 2 2 1 3 3 3 0 Domain of Unknown Function (DUF1522) NadA PF02445.11 gi|385804703|ref|YP_005841103.1| - 1e-100 336.4 0.0 1.2e-100 336.2 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein FAD_binding_2 PF00890.19 gi|385804704|ref|YP_005841104.1| - 2.8e-76 257.0 5.0 3.6e-76 256.6 3.4 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|385804704|ref|YP_005841104.1| - 1.3e-10 41.4 1.7 3.3e-09 36.8 1.2 2.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|385804704|ref|YP_005841104.1| - 1.2e-09 37.5 0.4 1.2e-09 37.5 0.3 2.3 2 1 1 3 3 3 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|385804704|ref|YP_005841104.1| - 4.3e-08 32.4 0.9 2.3e-06 26.7 0.6 2.3 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|385804704|ref|YP_005841104.1| - 7.6e-07 28.5 7.4 1.2e-06 27.8 4.5 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|385804704|ref|YP_005841104.1| - 1.2e-06 27.3 0.3 0.0012 17.3 0.1 2.3 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|385804704|ref|YP_005841104.1| - 0.00011 22.1 0.2 0.00035 20.5 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|385804704|ref|YP_005841104.1| - 0.00018 20.6 0.0 0.00026 20.1 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|385804704|ref|YP_005841104.1| - 0.00041 20.1 0.1 0.00072 19.4 0.1 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox PF00070.22 gi|385804704|ref|YP_005841104.1| - 0.00043 20.6 0.1 0.0021 18.4 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|385804704|ref|YP_005841104.1| - 0.00083 18.9 0.1 0.0015 18.1 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|385804704|ref|YP_005841104.1| - 0.0025 18.0 0.1 0.005 17.0 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Lycopene_cycl PF05834.7 gi|385804704|ref|YP_005841104.1| - 0.046 12.6 0.6 0.075 11.9 0.4 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein 3HCDH_N PF02737.13 gi|385804704|ref|YP_005841104.1| - 0.065 12.8 0.2 0.12 11.9 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|385804704|ref|YP_005841104.1| - 0.087 12.2 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Thi4 PF01946.12 gi|385804704|ref|YP_005841104.1| - 0.46 9.5 3.2 0.75 8.8 0.5 2.4 2 1 1 3 3 3 0 Thi4 family QRPTase_C PF01729.14 gi|385804705|ref|YP_005841105.1| - 8.5e-53 178.3 1.4 1.1e-52 177.9 0.9 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|385804705|ref|YP_005841105.1| - 6e-18 64.4 0.1 2e-17 62.7 0.0 1.9 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.14 gi|385804705|ref|YP_005841105.1| - 0.037 13.1 0.4 0.11 11.6 0.1 1.8 1 1 1 2 2 2 0 Ribulose-phosphate 3 epimerase family OMPdecase PF00215.19 gi|385804706|ref|YP_005841106.1| - 4.4e-33 114.5 0.0 5.3e-33 114.2 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF2859 PF11072.3 gi|385804706|ref|YP_005841106.1| - 0.069 12.6 0.0 0.16 11.3 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2859) zf-C2HC5 PF06221.8 gi|385804707|ref|YP_005841107.1| - 0.013 15.2 1.8 0.019 14.7 1.2 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type DUF2180 PF09947.4 gi|385804707|ref|YP_005841107.1| - 0.076 12.7 7.6 0.94 9.2 5.3 2.1 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2180) DUF1889 PF08986.5 gi|385804707|ref|YP_005841107.1| - 0.12 12.6 0.0 0.12 12.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1889) zf-AN1 PF01428.11 gi|385804707|ref|YP_005841107.1| - 0.18 11.7 4.4 0.33 10.8 3.0 1.6 1 1 0 1 1 1 0 AN1-like Zinc finger DZR PF12773.2 gi|385804707|ref|YP_005841107.1| - 0.25 11.1 4.3 0.39 10.5 3.0 1.4 1 0 0 1 1 1 0 Double zinc ribbon FYVE PF01363.16 gi|385804707|ref|YP_005841107.1| - 1.4 8.9 7.3 9.3 6.2 5.2 1.9 1 1 0 1 1 1 0 FYVE zinc finger zf-TFIIB PF13453.1 gi|385804707|ref|YP_005841107.1| - 3.9 6.7 6.0 0.53 9.5 1.4 1.6 1 1 0 1 1 1 0 Transcription factor zinc-finger Glutaredoxin PF00462.19 gi|385804708|ref|YP_005841108.1| - 4.9e-14 52.0 0.0 6.2e-14 51.7 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.1 gi|385804708|ref|YP_005841108.1| - 4.5e-12 46.0 0.0 4.8e-12 45.9 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|385804708|ref|YP_005841108.1| - 1.9e-08 34.1 0.0 2.1e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.15 gi|385804708|ref|YP_005841108.1| - 0.00071 19.7 0.0 0.00085 19.4 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|385804708|ref|YP_005841108.1| - 0.0017 18.6 0.0 0.0018 18.4 0.0 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_3 PF13192.1 gi|385804708|ref|YP_005841108.1| - 0.12 12.1 0.0 0.17 11.7 0.0 1.3 1 1 0 1 1 1 0 Thioredoxin domain Thioredoxin_2 PF13098.1 gi|385804708|ref|YP_005841108.1| - 0.13 12.4 0.0 0.18 12.0 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin-like domain PLDc_2 PF13091.1 gi|385804709|ref|YP_005841109.1| - 1.7e-06 27.8 0.0 3.3e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 PLD-like domain Tyr-DNA_phospho PF06087.7 gi|385804709|ref|YP_005841109.1| - 0.0012 17.5 0.0 0.0019 16.9 0.0 1.1 1 0 0 1 1 1 1 Tyrosyl-DNA phosphodiesterase RE_NgoFVII PF09565.5 gi|385804709|ref|YP_005841109.1| - 0.0034 16.3 0.7 0.0065 15.4 0.0 1.7 2 0 0 2 2 2 1 NgoFVII restriction endonuclease DUF457 PF04307.9 gi|385804710|ref|YP_005841110.1| - 1.3e-09 37.6 7.8 1.6e-09 37.3 5.4 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Arylsulfotrans PF05935.6 gi|385804711|ref|YP_005841111.1| - 9.3e-13 47.4 4.4 3.3e-12 45.6 1.4 2.1 1 1 0 2 2 2 1 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.1 gi|385804711|ref|YP_005841111.1| - 6.2e-07 28.8 0.3 8.8e-05 21.7 0.3 3.2 3 1 0 3 3 3 1 Arylsulfotransferase (ASST) NHL PF01436.16 gi|385804711|ref|YP_005841111.1| - 8.9 6.4 7.1 8 6.6 0.0 4.1 5 0 0 5 5 5 0 NHL repeat Xan_ur_permease PF00860.15 gi|385804712|ref|YP_005841112.1| - 1.7e-30 105.8 43.3 2.4e-30 105.2 30.0 1.2 1 0 0 1 1 1 1 Permease family Pribosyltran PF00156.22 gi|385804713|ref|YP_005841113.1| - 2.5e-11 43.3 0.1 4.1e-11 42.6 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.17 gi|385804713|ref|YP_005841113.1| - 0.043 13.6 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix DUF2017 PF09438.5 gi|385804713|ref|YP_005841113.1| - 0.059 12.9 0.1 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2017) Pribosyltran PF00156.22 gi|385804714|ref|YP_005841114.1| - 8.8e-11 41.6 3.5 3.4e-10 39.7 2.4 2.0 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|385804714|ref|YP_005841114.1| - 1.4e-05 24.4 0.4 2.1e-05 23.8 0.3 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|385804714|ref|YP_005841114.1| - 0.016 14.5 0.7 0.03 13.6 0.5 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase DUF46 PF01864.12 gi|385804715|ref|YP_005841115.1| - 1.3e-44 152.1 3.6 1.7e-44 151.7 2.5 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|385804715|ref|YP_005841115.1| - 3.9e-05 23.4 1.1 3.9e-05 23.4 0.7 2.0 2 0 0 2 2 2 1 Cytidylyltransferase family DUF502 PF04367.8 gi|385804716|ref|YP_005841116.1| - 2.8e-20 72.0 0.4 5.8e-20 71.0 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF502) Colicin_V PF02674.11 gi|385804716|ref|YP_005841116.1| - 0.0025 17.6 3.0 0.0036 17.1 2.1 1.2 1 0 0 1 1 1 1 Colicin V production protein Aminotran_4 PF01063.14 gi|385804717|ref|YP_005841117.1| - 3.8e-47 160.7 0.0 4.4e-47 160.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV RNA_pol_Rpb5_N PF03871.9 gi|385804717|ref|YP_005841117.1| - 0.027 14.8 0.1 0.049 14.0 0.1 1.4 1 0 0 1 1 1 0 RNA polymerase Rpb5, N-terminal domain DHBP_synthase PF00926.14 gi|385804718|ref|YP_005841118.1| - 2.3e-55 186.8 0.3 2.6e-55 186.6 0.2 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CTP-dep_RFKase PF01982.11 gi|385804719|ref|YP_005841119.1| - 4.7e-45 152.1 0.0 6.8e-45 151.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_24 PF13412.1 gi|385804719|ref|YP_005841119.1| - 1.6e-06 27.3 0.0 2.8e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|385804719|ref|YP_005841119.1| - 4.2e-06 26.3 0.1 8e-06 25.4 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|385804719|ref|YP_005841119.1| - 5.3e-06 26.3 0.0 0.00012 21.9 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|385804719|ref|YP_005841119.1| - 6.6e-06 25.8 0.1 1.5e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|385804719|ref|YP_005841119.1| - 1.7e-05 25.0 0.1 3.4e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|385804719|ref|YP_005841119.1| - 8.8e-05 22.1 0.0 0.00018 21.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|385804719|ref|YP_005841119.1| - 0.00021 20.8 0.0 0.00042 19.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.1 gi|385804719|ref|YP_005841119.1| - 0.00039 19.8 0.3 0.00078 18.9 0.2 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.14 gi|385804719|ref|YP_005841119.1| - 0.0017 18.2 0.0 0.0031 17.4 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|385804719|ref|YP_005841119.1| - 0.0044 16.5 0.1 0.0082 15.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.7 gi|385804719|ref|YP_005841119.1| - 0.021 14.3 0.0 0.039 13.5 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_1 PF00126.22 gi|385804719|ref|YP_005841119.1| - 0.076 12.7 0.0 0.36 10.6 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family tRNA-synt_1d PF00750.14 gi|385804721|ref|YP_005841121.1| - 5.7e-59 199.7 0.2 3.1e-58 197.3 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|385804721|ref|YP_005841121.1| - 1.3e-30 105.8 0.2 1.2e-29 102.7 0.0 2.3 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|385804721|ref|YP_005841121.1| - 1.2e-09 38.5 0.0 3.9e-09 36.9 0.0 1.9 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|385804721|ref|YP_005841121.1| - 0.0082 14.8 0.0 0.15 10.6 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) FixP_N PF14715.1 gi|529167410|ref|YP_008378658.1| - 0.0096 15.2 0.1 0.0098 15.2 0.1 1.2 1 0 0 1 1 1 1 N-terminal domain of cytochrome oxidase-cbb3, FixP OPT PF03169.10 gi|529167410|ref|YP_008378658.1| - 0.053 11.9 0.1 0.053 11.9 0.1 1.0 1 0 0 1 1 1 0 OPT oligopeptide transporter protein eRF1_2 PF03464.10 gi|385804722|ref|YP_005841122.1| - 6.2e-37 126.8 0.0 1.5e-36 125.6 0.0 1.7 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|385804722|ref|YP_005841122.1| - 1.5e-27 96.1 0.1 4e-27 94.7 0.0 1.8 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|385804722|ref|YP_005841122.1| - 2.7e-25 88.4 0.0 4.4e-25 87.7 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 Zn-ribbon_8 PF09723.5 gi|385804722|ref|YP_005841122.1| - 0.00014 21.7 1.9 0.00035 20.4 1.3 1.7 1 0 0 1 1 1 1 Zinc ribbon domain ATP-synt_D PF01813.12 gi|385804723|ref|YP_005841123.1| - 1e-60 204.6 10.9 1.2e-60 204.4 7.5 1.1 1 0 0 1 1 1 1 ATP synthase subunit D DUF948 PF06103.6 gi|385804723|ref|YP_005841123.1| - 0.14 12.0 1.4 3.7 7.4 0.1 2.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) RNA_pol_3_Rpc31 PF11705.3 gi|385804723|ref|YP_005841123.1| - 0.91 9.4 14.2 1.7 8.5 9.8 1.4 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 Ribosomal_S13 PF00416.17 gi|385804723|ref|YP_005841123.1| - 1 9.8 4.8 1.2 9.5 0.8 2.4 2 0 0 2 2 2 0 Ribosomal protein S13/S18 DUF4611 PF15387.1 gi|385804723|ref|YP_005841123.1| - 1.8 8.7 9.7 4.6 7.4 6.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4611) ATP-synt_ab PF00006.20 gi|385804724|ref|YP_005841124.1| - 1.1e-58 198.2 0.0 1.5e-58 197.8 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|385804724|ref|YP_005841124.1| - 7.5e-18 65.0 0.1 1.5e-17 64.0 0.1 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|385804724|ref|YP_005841124.1| - 1.8e-12 47.3 0.6 3.9e-12 46.2 0.4 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|385804724|ref|YP_005841124.1| - 0.00059 19.6 0.9 0.002 17.9 0.7 2.0 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_ab PF00006.20 gi|385804725|ref|YP_005841125.1| - 1.8e-93 311.9 0.0 2.8e-93 311.3 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|385804725|ref|YP_005841125.1| - 9e-19 68.0 0.5 2e-18 66.9 0.3 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|385804725|ref|YP_005841125.1| - 3.6e-12 46.3 3.4 3.6e-12 46.3 2.3 2.1 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain DUF1932 PF09130.6 gi|385804725|ref|YP_005841125.1| - 0.18 11.5 1.7 1.7 8.4 0.4 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1932) ATP-synt_F PF01990.12 gi|385804726|ref|YP_005841126.1| - 1.3e-18 67.1 0.1 1.6e-18 66.8 0.0 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit vATP-synt_AC39 PF01992.11 gi|385804727|ref|YP_005841127.1| - 7.9e-95 317.8 6.2 8.8e-95 317.6 4.3 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit DUF2981 PF11200.3 gi|385804727|ref|YP_005841127.1| - 0.1 11.6 0.0 0.28 10.2 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2981) vATP-synt_E PF01991.13 gi|385804728|ref|YP_005841128.1| - 1.8e-42 144.8 13.0 2.4e-42 144.4 9.0 1.1 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit HrpE PF06188.7 gi|385804728|ref|YP_005841128.1| - 0.00021 21.1 8.6 0.00032 20.5 6.0 1.2 1 0 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E ATP-synt_B PF00430.13 gi|385804728|ref|YP_005841128.1| - 0.0031 17.3 20.8 0.013 15.3 14.5 1.9 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) Fmp27_WPPW PF10359.4 gi|385804728|ref|YP_005841128.1| - 0.0071 14.8 4.6 0.0079 14.6 3.2 1.2 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain DUF3552 PF12072.3 gi|385804728|ref|YP_005841128.1| - 0.084 12.0 23.7 0.18 11.0 16.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) AAA_13 PF13166.1 gi|385804728|ref|YP_005841128.1| - 0.16 10.4 9.9 0.19 10.1 6.9 1.1 1 0 0 1 1 1 0 AAA domain DUF2317 PF10079.4 gi|385804728|ref|YP_005841128.1| - 0.19 10.3 6.8 0.27 9.8 4.7 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2317) HlyD PF00529.15 gi|385804728|ref|YP_005841128.1| - 0.75 9.0 12.3 1 8.5 8.5 1.2 1 0 0 1 1 1 0 HlyD family secretion protein DivIVA PF05103.8 gi|385804728|ref|YP_005841128.1| - 0.79 9.7 17.0 15 5.6 11.5 2.4 1 1 1 2 2 2 0 DivIVA protein Peptidase_M41 PF01434.13 gi|385804728|ref|YP_005841128.1| - 0.94 8.9 5.8 0.77 9.1 2.4 1.9 1 1 1 2 2 2 0 Peptidase family M41 HXXSHH PF07586.6 gi|385804728|ref|YP_005841128.1| - 0.97 8.2 3.7 0.71 8.7 1.1 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1552) Rgp1 PF08737.5 gi|385804728|ref|YP_005841128.1| - 1.5 7.8 3.9 1.9 7.4 2.7 1.1 1 0 0 1 1 1 0 Rgp1 zf-C4H2 PF10146.4 gi|385804728|ref|YP_005841128.1| - 2.2 8.2 11.7 2.7 7.9 8.1 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein Aldedh PF00171.17 gi|385804728|ref|YP_005841128.1| - 3.4 5.9 5.3 4 5.6 3.4 1.4 1 1 0 1 1 1 0 Aldehyde dehydrogenase family FUSC PF04632.7 gi|385804728|ref|YP_005841128.1| - 6.2 5.1 6.1 6.9 4.9 4.2 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family Terminase_2 PF03592.11 gi|385804728|ref|YP_005841128.1| - 7.6 6.8 13.9 8.4 6.6 7.8 2.1 1 1 1 2 2 2 0 Terminase small subunit ATP-synt_C PF00137.16 gi|385804729|ref|YP_005841129.1| - 1.3e-13 50.5 12.5 1.6e-13 50.3 8.7 1.1 1 0 0 1 1 1 1 ATP synthase subunit C V_ATPase_I PF01496.14 gi|385804730|ref|YP_005841130.1| - 4.8e-64 216.5 39.3 9e-32 109.8 13.7 5.4 3 2 0 3 3 3 3 V-type ATPase 116kDa subunit family BBS2_C PF14782.1 gi|385804730|ref|YP_005841130.1| - 0.0013 17.3 0.8 0.04 12.4 0.1 2.1 2 0 0 2 2 2 1 Ciliary BBSome complex subunit 2, C-terminal ATP-synt_D PF01813.12 gi|385804730|ref|YP_005841130.1| - 0.0066 16.0 2.1 0.69 9.4 0.5 2.3 2 0 0 2 2 2 1 ATP synthase subunit D YlqD PF11068.3 gi|385804730|ref|YP_005841130.1| - 0.038 14.0 1.5 2.1 8.3 0.0 2.4 2 0 0 2 2 2 0 YlqD protein DUF4140 PF13600.1 gi|385804730|ref|YP_005841130.1| - 0.048 14.1 6.3 1.8 9.0 0.5 2.4 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Prefoldin_2 PF01920.15 gi|385804730|ref|YP_005841130.1| - 0.2 11.4 8.9 2.5 7.9 0.7 2.8 3 0 0 3 3 3 0 Prefoldin subunit CENP-F_leu_zip PF10473.4 gi|385804730|ref|YP_005841130.1| - 0.21 11.4 8.2 0.76 9.6 0.4 2.3 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4071 PF13281.1 gi|385804730|ref|YP_005841130.1| - 0.31 9.8 2.7 8.8 5.0 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4071) Med4 PF10018.4 gi|385804730|ref|YP_005841130.1| - 0.4 10.0 5.5 2 7.7 0.5 2.2 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF4600 PF15372.1 gi|385804730|ref|YP_005841130.1| - 0.4 10.8 4.9 1 9.5 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4600) GrpE PF01025.14 gi|385804730|ref|YP_005841130.1| - 0.6 9.6 5.2 8.1 5.9 1.2 2.3 2 0 0 2 2 2 0 GrpE DASH_Dad3 PF08656.5 gi|385804730|ref|YP_005841130.1| - 0.63 9.7 3.8 0.18 11.5 0.2 1.8 2 0 0 2 2 2 0 DASH complex subunit Dad3 OmpH PF03938.9 gi|385804730|ref|YP_005841130.1| - 0.91 9.4 4.5 1.7 8.5 1.3 2.0 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) TBPIP PF07106.8 gi|385804730|ref|YP_005841130.1| - 1.4 8.4 5.4 5.6 6.4 0.3 2.2 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) ALIX_LYPXL_bnd PF13949.1 gi|385804730|ref|YP_005841130.1| - 1.7 7.5 9.2 4.7 6.0 0.9 2.1 2 0 0 2 2 2 0 ALIX V-shaped domain binding to HIV DUF4200 PF13863.1 gi|385804730|ref|YP_005841130.1| - 3.2 7.7 10.3 1.5 8.7 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) KfrA_N PF11740.3 gi|385804730|ref|YP_005841130.1| - 4.1 7.8 10.3 3.7 8.0 0.5 2.5 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term ATP-synt_B PF00430.13 gi|385804731|ref|YP_005841131.1| - 2.9e-06 27.1 27.3 0.0017 18.1 4.1 2.5 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) DUF3552 PF12072.3 gi|385804731|ref|YP_005841131.1| - 0.00016 20.9 26.7 0.00039 19.6 13.3 2.0 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) HrpE PF06188.7 gi|385804731|ref|YP_005841131.1| - 0.021 14.5 13.1 0.039 13.7 9.1 1.5 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E DUF883 PF05957.8 gi|385804731|ref|YP_005841131.1| - 0.078 13.3 15.2 1.2 9.5 4.8 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) V-ATPase_G PF03179.10 gi|385804731|ref|YP_005841131.1| - 0.29 11.4 27.3 7.7 6.8 18.9 2.4 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit PP_kinase_N PF13089.1 gi|385804731|ref|YP_005841131.1| - 0.55 10.3 5.9 0.23 11.5 1.3 1.9 1 1 1 2 2 2 0 Polyphosphate kinase N-terminal domain DUF445 PF04286.7 gi|385804731|ref|YP_005841131.1| - 0.97 8.8 8.6 1.2 8.6 5.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF445) Phage_GPO PF05929.6 gi|385804731|ref|YP_005841131.1| - 1 8.5 8.2 1.1 8.4 5.7 1.1 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF4102 PF13356.1 gi|385804731|ref|YP_005841131.1| - 1.3 8.9 11.9 1.2 9.0 2.3 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4102) DivIVA PF05103.8 gi|385804731|ref|YP_005841131.1| - 1.4 9.0 18.2 3.9 7.5 7.2 2.1 1 1 1 2 2 2 0 DivIVA protein Caudo_TAP PF02413.12 gi|385804731|ref|YP_005841131.1| - 1.4 9.0 15.9 4.6 7.4 6.5 2.6 1 1 2 3 3 3 0 Caudovirales tail fibre assembly protein Muted PF14942.1 gi|385804731|ref|YP_005841131.1| - 1.6 8.6 13.2 2.7 7.8 9.1 1.4 1 1 0 1 1 1 0 Organelle biogenesis, Muted-like protein Mnd1 PF03962.10 gi|385804731|ref|YP_005841131.1| - 3.6 7.2 12.0 4.6 6.8 8.3 1.2 1 0 0 1 1 1 0 Mnd1 family Med8 PF10232.4 gi|385804731|ref|YP_005841131.1| - 4 6.8 11.4 4.4 6.7 7.9 1.1 1 0 0 1 1 1 0 Mediator of RNA polymerase II transcription complex subunit 8 DUF2252 PF10009.4 gi|385804731|ref|YP_005841131.1| - 4.1 6.1 7.9 4.7 5.9 5.5 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2252) LUC7 PF03194.10 gi|385804731|ref|YP_005841131.1| - 4.2 6.8 12.0 5 6.5 8.3 1.1 1 0 0 1 1 1 0 LUC7 N_terminus KfrA_N PF11740.3 gi|385804731|ref|YP_005841131.1| - 4.7 7.6 25.0 1.1 9.7 9.1 2.3 1 1 1 2 2 2 0 Plasmid replication region DNA-binding N-term DUF3135 PF11333.3 gi|385804731|ref|YP_005841131.1| - 5.2 7.3 6.1 3.2 7.9 0.9 2.4 1 1 1 3 3 3 0 Protein of unknown function (DUF3135) Atg14 PF10186.4 gi|385804731|ref|YP_005841131.1| - 7.6 5.3 9.1 11 4.9 6.3 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 HAUS6_N PF14661.1 gi|385804731|ref|YP_005841131.1| - 8.2 5.6 11.0 11 5.3 7.6 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus Sds3 PF08598.6 gi|385804731|ref|YP_005841131.1| - 8.5 5.8 13.3 11 5.4 9.2 1.3 1 0 0 1 1 1 0 Sds3-like ISG65-75 PF11727.3 gi|385804731|ref|YP_005841131.1| - 8.6 5.3 13.9 11 4.9 8.7 1.7 1 1 0 1 1 1 0 Invariant surface glycoprotein Methyltransf_11 PF08241.7 gi|385804732|ref|YP_005841132.1| - 3.2e-22 78.8 0.0 5.2e-22 78.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|385804732|ref|YP_005841132.1| - 9e-17 61.2 0.0 1.1e-16 60.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385804732|ref|YP_005841132.1| - 9e-16 57.8 0.0 1.2e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|385804732|ref|YP_005841132.1| - 3.3e-14 52.5 0.0 4.7e-11 42.2 0.0 2.1 1 1 1 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|385804732|ref|YP_005841132.1| - 2.3e-13 50.3 0.0 4.1e-13 49.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|385804732|ref|YP_005841132.1| - 3.2e-12 46.8 0.0 4.8e-12 46.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385804732|ref|YP_005841132.1| - 3.9e-11 43.5 0.0 6.2e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|385804732|ref|YP_005841132.1| - 7.7e-09 35.6 0.0 1.4e-08 34.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|385804732|ref|YP_005841132.1| - 6e-06 25.4 0.0 7.5e-06 25.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MetW PF07021.7 gi|385804732|ref|YP_005841132.1| - 2.9e-05 23.5 0.0 4e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.14 gi|385804732|ref|YP_005841132.1| - 0.00015 21.3 0.0 0.00052 19.6 0.0 1.9 2 1 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|385804732|ref|YP_005841132.1| - 0.00022 20.3 0.0 0.00036 19.6 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|385804732|ref|YP_005841132.1| - 0.00068 19.0 0.0 0.001 18.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_9 PF08003.6 gi|385804732|ref|YP_005841132.1| - 0.0032 16.2 0.0 0.004 15.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) NodS PF05401.6 gi|385804732|ref|YP_005841132.1| - 0.0046 16.3 0.0 0.006 16.0 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_29 PF03141.11 gi|385804732|ref|YP_005841132.1| - 0.014 13.7 0.0 0.018 13.4 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase ADPrib_exo_Tox PF03496.9 gi|385804732|ref|YP_005841132.1| - 0.036 13.2 0.0 0.11 11.7 0.0 1.7 2 0 0 2 2 2 0 ADP-ribosyltransferase exoenzyme Methyltransf_2 PF00891.13 gi|385804732|ref|YP_005841132.1| - 0.037 13.2 0.0 0.059 12.5 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_32 PF13679.1 gi|385804732|ref|YP_005841132.1| - 0.11 12.1 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF1628 PF07790.6 gi|385804733|ref|YP_005841133.1| - 1.8 9.3 4.8 8 7.2 3.3 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1628) polyprenyl_synt PF00348.12 gi|385804736|ref|YP_005841136.1| - 2.1e-53 180.8 0.2 2.6e-53 180.5 0.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase DUF373 PF04123.8 gi|385804737|ref|YP_005841137.1| - 1.2e-117 392.7 8.9 1.4e-117 392.5 6.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) MARVEL PF01284.18 gi|385804737|ref|YP_005841137.1| - 0.27 11.0 10.3 5.8 6.7 0.4 2.3 1 1 1 2 2 2 0 Membrane-associating domain Radical_SAM PF04055.16 gi|385804738|ref|YP_005841138.1| - 5.7e-05 23.3 0.0 0.0077 16.4 0.0 2.2 2 0 0 2 2 2 2 Radical SAM superfamily Fer4_14 PF13394.1 gi|385804738|ref|YP_005841138.1| - 0.001 19.0 0.0 0.0019 18.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|385804738|ref|YP_005841138.1| - 0.0018 18.3 0.0 0.0037 17.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF4134 PF13572.1 gi|385804739|ref|YP_005841139.1| - 0.0044 17.1 3.4 0.0045 17.0 0.1 2.5 2 1 0 2 2 2 1 Domain of unknown function (DUF4134) DUF3955 PF13127.1 gi|385804739|ref|YP_005841139.1| - 0.092 12.3 0.2 0.092 12.3 0.1 4.1 4 0 0 4 4 4 0 Protein of unknown function (DUF3955) DUF1705 PF08019.7 gi|385804739|ref|YP_005841139.1| - 0.13 11.8 2.3 0.53 9.7 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1705) TRAM PF01938.15 gi|385804740|ref|YP_005841140.1| - 5.9e-08 32.3 0.1 9.5e-08 31.7 0.1 1.3 1 0 0 1 1 1 1 TRAM domain TRAP_alpha PF03896.11 gi|385804740|ref|YP_005841140.1| - 0.033 13.1 1.3 0.046 12.7 0.9 1.2 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit Metaviral_G PF09595.5 gi|385804740|ref|YP_005841140.1| - 0.051 13.2 2.8 0.068 12.7 2.0 1.1 1 0 0 1 1 1 0 Metaviral_G glycoprotein Bd3614_N PF14442.1 gi|385804740|ref|YP_005841140.1| - 0.11 12.4 3.5 0.15 12.0 2.4 1.2 1 0 0 1 1 1 0 Bd3614-like deaminase N-terminal TFX_C PF14601.1 gi|385804741|ref|YP_005841141.1| - 2.1e-32 110.7 0.0 3.1e-32 110.2 0.0 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.11 gi|385804741|ref|YP_005841141.1| - 1.7e-05 23.9 0.5 2.8e-05 23.3 0.3 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.14 gi|385804741|ref|YP_005841141.1| - 3.6e-05 22.9 0.4 9.4e-05 21.6 0.1 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family RepB PF07506.6 gi|385804741|ref|YP_005841141.1| - 0.00077 19.3 0.1 0.0012 18.7 0.1 1.3 1 0 0 1 1 1 1 RepB plasmid partitioning protein Sigma70_r4_2 PF08281.7 gi|385804741|ref|YP_005841141.1| - 0.0015 17.9 0.2 0.0035 16.7 0.1 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|385804741|ref|YP_005841141.1| - 0.0018 17.8 0.3 0.0045 16.6 0.2 1.7 1 0 0 1 1 1 1 Homeodomain-like domain KorB PF08535.5 gi|385804741|ref|YP_005841141.1| - 0.0031 17.6 0.2 3.3 7.9 0.0 2.4 1 1 0 2 2 2 2 KorB domain HTH_7 PF02796.10 gi|385804741|ref|YP_005841141.1| - 0.0058 16.4 0.0 0.014 15.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_3 PF01381.17 gi|385804741|ref|YP_005841141.1| - 0.01 15.6 0.1 0.024 14.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_37 PF13744.1 gi|385804741|ref|YP_005841141.1| - 0.018 14.8 0.0 0.036 13.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_31 PF13560.1 gi|385804741|ref|YP_005841141.1| - 0.022 14.9 2.1 0.054 13.7 1.5 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain AP_endonuc_2 PF01261.19 gi|385804741|ref|YP_005841141.1| - 0.084 12.1 0.1 0.11 11.7 0.1 1.2 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel NTP_transferase PF00483.18 gi|385804742|ref|YP_005841142.1| - 6.2e-39 133.7 0.0 3.5e-38 131.3 0.0 2.0 2 0 0 2 2 2 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|385804742|ref|YP_005841142.1| - 2.2e-10 40.8 0.5 2.4e-09 37.4 0.0 2.2 2 0 0 2 2 2 1 MobA-like NTP transferase domain MannoseP_isomer PF01050.13 gi|385804742|ref|YP_005841142.1| - 1.1e-05 25.1 0.2 0.0017 17.9 0.0 2.4 2 0 0 2 2 2 2 Mannose-6-phosphate isomerase CRA PF06589.6 gi|385804742|ref|YP_005841142.1| - 0.087 12.1 1.0 0.16 11.2 0.0 1.9 2 0 0 2 2 2 0 Circumsporozoite-related antigen (CRA) NYAP_C PF15452.1 gi|385804743|ref|YP_005841143.1| - 0.0078 15.2 0.8 0.0091 15.0 0.5 1.0 1 0 0 1 1 1 1 Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter tRNA_anti-codon PF01336.20 gi|385804744|ref|YP_005841144.1| - 0.00086 19.1 0.2 0.009 15.8 0.0 2.4 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain PqqD PF05402.7 gi|385804744|ref|YP_005841144.1| - 0.048 13.6 3.6 0.057 13.4 0.8 2.5 2 1 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) RHH_1 PF01402.16 gi|385804746|ref|YP_005841146.1| - 1.6e-06 27.7 0.3 7.2e-06 25.6 0.1 2.3 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF3562 PF12085.3 gi|385804746|ref|YP_005841146.1| - 0.0063 16.3 0.3 0.024 14.4 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3562) RHH_3 PF12651.2 gi|385804746|ref|YP_005841146.1| - 0.0099 15.5 0.1 0.018 14.7 0.1 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix domain HicB PF05534.7 gi|385804746|ref|YP_005841146.1| - 0.062 12.8 0.5 0.34 10.5 0.0 2.0 2 0 0 2 2 2 0 HicB family Glutaredoxin2_C PF04399.8 gi|385804746|ref|YP_005841146.1| - 0.086 12.4 1.5 0.46 10.0 0.5 1.9 2 0 0 2 2 2 0 Glutaredoxin 2, C terminal domain Topoisom_I PF01028.15 gi|385804746|ref|YP_005841146.1| - 0.09 11.8 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Eukaryotic DNA topoisomerase I, catalytic core Sec2p PF06428.6 gi|385804746|ref|YP_005841146.1| - 0.15 11.9 6.7 0.32 10.8 4.7 1.7 1 1 0 1 1 1 0 GDP/GTP exchange factor Sec2p Spc24 PF08286.6 gi|385804746|ref|YP_005841146.1| - 0.18 11.4 3.2 0.31 10.7 2.2 1.4 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 Condensation PF00668.15 gi|385804746|ref|YP_005841146.1| - 0.25 10.1 3.0 0.74 8.6 0.0 2.0 2 0 0 2 2 2 0 Condensation domain IncA PF04156.9 gi|385804746|ref|YP_005841146.1| - 3.7 7.1 8.3 4.5 6.8 5.7 1.5 1 1 0 1 1 1 0 IncA protein ABC_tran PF00005.22 gi|385804748|ref|YP_005841148.1| - 2.5e-33 115.2 0.0 3.6e-33 114.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385804748|ref|YP_005841148.1| - 3.4e-12 46.9 0.1 5.7e-06 26.4 0.1 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|385804748|ref|YP_005841148.1| - 3.5e-06 26.4 0.7 0.0044 16.2 0.1 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|385804748|ref|YP_005841148.1| - 1.9e-05 23.9 0.4 0.00087 18.4 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|385804748|ref|YP_005841148.1| - 2.4e-05 23.7 0.0 4.8e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|385804748|ref|YP_005841148.1| - 2.8e-05 24.5 0.2 6e-05 23.4 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|385804748|ref|YP_005841148.1| - 6.8e-05 23.0 0.2 0.00086 19.4 0.1 2.4 1 1 1 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|385804748|ref|YP_005841148.1| - 9.7e-05 21.9 0.1 0.0057 16.1 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|385804748|ref|YP_005841148.1| - 0.00027 20.1 0.0 0.00048 19.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|385804748|ref|YP_005841148.1| - 0.0038 18.0 0.1 0.0063 17.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain MutS_V PF00488.16 gi|385804748|ref|YP_005841148.1| - 0.0038 16.6 0.0 0.0067 15.8 0.0 1.3 1 0 0 1 1 1 1 MutS domain V Arch_ATPase PF01637.13 gi|385804748|ref|YP_005841148.1| - 0.01 15.5 0.0 0.025 14.3 0.0 1.6 2 0 0 2 2 2 0 Archaeal ATPase Miro PF08477.8 gi|385804748|ref|YP_005841148.1| - 0.011 16.1 0.0 0.028 14.9 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein cobW PF02492.14 gi|385804748|ref|YP_005841148.1| - 0.012 15.0 0.2 0.025 14.0 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.1 gi|385804748|ref|YP_005841148.1| - 0.013 15.5 0.8 0.11 12.5 0.6 2.1 1 1 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|385804748|ref|YP_005841148.1| - 0.013 15.4 1.0 0.062 13.2 0.7 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|385804748|ref|YP_005841148.1| - 0.014 14.8 0.0 0.086 12.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|385804748|ref|YP_005841148.1| - 0.015 14.9 0.8 0.033 13.8 0.2 1.7 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.1 gi|385804748|ref|YP_005841148.1| - 0.018 14.6 0.1 0.071 12.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|385804748|ref|YP_005841148.1| - 0.031 14.1 0.0 0.088 12.7 0.0 1.8 2 1 0 2 2 2 0 AAA domain Dynamin_N PF00350.18 gi|385804748|ref|YP_005841148.1| - 0.044 13.6 0.3 0.38 10.5 0.1 2.0 2 0 0 2 2 2 0 Dynamin family AAA_18 PF13238.1 gi|385804748|ref|YP_005841148.1| - 0.044 14.0 0.5 0.09 13.0 0.4 1.9 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|385804748|ref|YP_005841148.1| - 0.052 13.4 0.3 0.12 12.2 0.1 1.7 2 1 0 2 2 1 0 AAA domain NB-ARC PF00931.17 gi|385804748|ref|YP_005841148.1| - 0.054 12.3 0.3 0.1 11.4 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain MobB PF03205.9 gi|385804748|ref|YP_005841148.1| - 0.065 12.9 0.1 0.11 12.1 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|385804748|ref|YP_005841148.1| - 0.074 11.9 0.1 0.14 11.0 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein GTP_EFTU PF00009.22 gi|385804748|ref|YP_005841148.1| - 0.076 12.4 0.2 0.38 10.1 0.0 2.1 2 1 1 3 3 3 0 Elongation factor Tu GTP binding domain AAA_24 PF13479.1 gi|385804748|ref|YP_005841148.1| - 0.12 11.8 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain Guanylate_kin PF00625.16 gi|385804748|ref|YP_005841148.1| - 0.13 11.6 0.4 3.6 6.9 0.0 2.2 2 0 0 2 2 2 0 Guanylate kinase ABC_tran PF00005.22 gi|385804749|ref|YP_005841149.1| - 1.1e-31 110.0 0.0 1.5e-31 109.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385804749|ref|YP_005841149.1| - 1.2e-14 54.9 0.6 2.1e-06 27.9 0.1 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|385804749|ref|YP_005841149.1| - 0.00023 20.6 0.1 0.00048 19.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|385804749|ref|YP_005841149.1| - 0.00074 19.9 0.2 0.0014 19.0 0.2 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|385804749|ref|YP_005841149.1| - 0.0034 16.6 1.2 0.12 11.6 0.9 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|385804749|ref|YP_005841149.1| - 0.0038 16.4 0.0 0.0062 15.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 FlbD PF06289.6 gi|385804749|ref|YP_005841149.1| - 0.0076 15.6 0.3 0.014 14.7 0.2 1.5 1 0 0 1 1 1 1 Flagellar protein (FlbD) ABC_ATPase PF09818.4 gi|385804749|ref|YP_005841149.1| - 0.0089 14.6 0.1 0.68 8.4 0.0 2.2 2 0 0 2 2 2 1 Predicted ATPase of the ABC class BCA_ABC_TP_C PF12399.3 gi|385804749|ref|YP_005841149.1| - 0.016 14.8 0.5 0.042 13.5 0.4 1.7 1 1 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter AAA_16 PF13191.1 gi|385804749|ref|YP_005841149.1| - 0.016 15.1 1.4 0.72 9.8 1.0 2.1 1 1 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|385804749|ref|YP_005841149.1| - 0.025 14.5 0.0 0.044 13.7 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase Zeta_toxin PF06414.7 gi|385804749|ref|YP_005841149.1| - 0.053 12.6 0.0 0.082 11.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin DUF2813 PF11398.3 gi|385804749|ref|YP_005841149.1| - 0.055 12.5 0.0 0.08 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) AAA_15 PF13175.1 gi|385804749|ref|YP_005841149.1| - 0.093 11.7 0.1 5.9 5.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.1 gi|385804749|ref|YP_005841149.1| - 0.14 11.6 0.0 0.22 11.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|385804749|ref|YP_005841149.1| - 0.32 11.1 2.8 5 7.2 1.9 2.4 1 1 0 1 1 1 0 AAA domain BPD_transp_2 PF02653.11 gi|385804750|ref|YP_005841150.1| - 2.8e-36 124.8 39.4 3.4e-36 124.5 27.3 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|385804751|ref|YP_005841151.1| - 1.8e-47 161.5 26.5 2e-47 161.3 18.4 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Dexa_ind PF15198.1 gi|385804751|ref|YP_005841151.1| - 0.22 11.4 1.9 4.4 7.2 0.1 2.5 2 0 0 2 2 2 0 Dexamethasone-induced Peripla_BP_6 PF13458.1 gi|385804752|ref|YP_005841152.1| - 7e-44 150.5 7.5 8.7e-44 150.2 5.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|385804752|ref|YP_005841152.1| - 7.1e-26 90.8 0.0 8.2e-26 90.6 0.0 1.0 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|385804752|ref|YP_005841152.1| - 7.3e-14 51.2 0.0 1.4e-08 33.9 0.0 2.1 2 0 0 2 2 2 2 Periplasmic binding protein domain PhoU PF01895.14 gi|385804754|ref|YP_005841154.1| - 8.5e-38 128.6 8.5 5.2e-21 74.8 2.2 2.1 2 0 0 2 2 2 2 PhoU domain ATP-synt_D PF01813.12 gi|385804754|ref|YP_005841154.1| - 0.019 14.5 0.1 0.037 13.5 0.0 1.5 1 0 0 1 1 1 0 ATP synthase subunit D PhoU PF01895.14 gi|385804755|ref|YP_005841155.1| - 1.3e-24 86.4 9.2 1.1e-16 60.9 1.1 2.4 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|385804755|ref|YP_005841155.1| - 8.2e-11 41.3 0.0 1.9e-10 40.2 0.0 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PhoU_div PF01865.11 gi|385804755|ref|YP_005841155.1| - 0.0034 16.5 1.4 0.0034 16.5 1.0 1.6 2 0 0 2 2 2 1 Protein of unknown function DUF47 Ribosomal_S8e PF01201.17 gi|385804756|ref|YP_005841156.1| - 1.2e-31 109.6 1.2 1.3e-31 109.4 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e DUF2240 PF09999.4 gi|385804757|ref|YP_005841157.1| - 4.6e-52 175.2 0.1 5.4e-52 175.0 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) CPSase_L_D2 PF02786.12 gi|385804758|ref|YP_005841158.1| - 2.6e-95 317.7 0.2 1.6e-57 194.2 0.0 2.9 2 1 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|385804758|ref|YP_005841158.1| - 5.6e-46 155.1 0.6 8e-22 77.4 0.1 2.6 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP-grasp_4 PF13535.1 gi|385804758|ref|YP_005841158.1| - 4.1e-27 95.1 0.0 7.1e-15 55.2 0.0 2.7 2 0 0 2 2 2 2 ATP-grasp domain CPSase_L_D3 PF02787.14 gi|385804758|ref|YP_005841158.1| - 4.8e-23 81.2 0.1 1e-22 80.1 0.1 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATPgrasp_Ter PF15632.1 gi|385804758|ref|YP_005841158.1| - 4.1e-19 68.5 0.0 4.7e-10 38.7 0.0 4.0 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|385804758|ref|YP_005841158.1| - 1.9e-12 47.0 0.0 2.1e-08 33.7 0.0 2.6 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|385804758|ref|YP_005841158.1| - 2.6e-12 46.4 0.0 1.1e-06 28.1 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|385804758|ref|YP_005841158.1| - 1.3e-09 38.1 0.1 8e-05 22.5 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp domain FxsA PF04186.8 gi|385804762|ref|YP_005841162.1| - 2.6e-29 101.2 7.8 3.1e-29 101.0 5.4 1.0 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein Thioredox_DsbH PF03190.10 gi|385804763|ref|YP_005841163.1| - 1.3e-27 96.5 0.0 2.2e-27 95.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|385804763|ref|YP_005841163.1| - 1.2e-12 47.6 0.0 2.7e-12 46.5 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.15 gi|385804763|ref|YP_005841163.1| - 2.3e-07 30.4 0.0 4.3e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|385804763|ref|YP_005841163.1| - 0.00018 21.6 0.0 0.00076 19.6 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain GCHY-1 PF02649.9 gi|385804764|ref|YP_005841164.1| - 2.7e-85 285.9 2.4 3.1e-85 285.7 1.7 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 DNA_pol_B_palm PF14792.1 gi|385804764|ref|YP_005841164.1| - 0.042 13.9 0.0 0.11 12.5 0.0 1.7 1 0 0 1 1 1 0 DNA polymerase beta palm DUF4167 PF13763.1 gi|385804764|ref|YP_005841164.1| - 0.11 12.5 3.5 0.13 12.3 1.5 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4167) Pyr_redox_2 PF07992.9 gi|385804766|ref|YP_005841166.1| - 4.5e-30 105.0 0.2 5.8e-30 104.6 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|385804766|ref|YP_005841166.1| - 1.1e-07 32.1 0.5 6.2e-05 23.3 0.0 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|385804766|ref|YP_005841166.1| - 0.00052 20.1 2.1 0.021 14.8 0.2 3.3 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|385804766|ref|YP_005841166.1| - 0.0088 14.9 2.9 6.2 5.6 0.0 3.5 4 0 0 4 4 4 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|385804766|ref|YP_005841166.1| - 0.047 13.7 2.2 0.92 9.5 0.0 3.0 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|385804766|ref|YP_005841166.1| - 0.057 11.8 0.0 5.4 5.3 0.0 2.9 3 1 0 3 3 3 0 HI0933-like protein NAD_binding_9 PF13454.1 gi|385804766|ref|YP_005841166.1| - 0.11 12.2 3.8 11 5.7 0.0 3.7 4 0 0 4 4 4 0 FAD-NAD(P)-binding Amino_oxidase PF01593.19 gi|385804768|ref|YP_005841168.1| - 4.6e-21 75.4 0.2 1.4e-16 60.6 0.0 2.1 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|385804768|ref|YP_005841168.1| - 4.3e-13 49.0 2.6 8.5e-13 48.1 0.3 2.6 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|385804768|ref|YP_005841168.1| - 1.2e-06 28.6 0.2 7.2e-05 22.7 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|385804768|ref|YP_005841168.1| - 1.3e-06 27.5 0.9 3.5e-06 26.1 0.4 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|385804768|ref|YP_005841168.1| - 8.7e-06 24.8 3.4 1.6e-05 23.9 2.4 1.4 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|385804768|ref|YP_005841168.1| - 0.0002 20.5 0.7 0.00034 19.8 0.5 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|385804768|ref|YP_005841168.1| - 0.00028 19.8 0.5 0.00061 18.7 0.4 1.6 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|385804768|ref|YP_005841168.1| - 0.00077 19.5 0.3 0.0018 18.3 0.2 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|385804768|ref|YP_005841168.1| - 0.0017 16.9 1.7 0.0026 16.2 1.2 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox PF00070.22 gi|385804768|ref|YP_005841168.1| - 0.0059 16.9 2.8 0.016 15.5 0.5 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|385804768|ref|YP_005841168.1| - 0.0093 15.0 2.7 0.023 13.7 1.0 2.2 2 0 0 2 2 2 1 Thi4 family Trp_halogenase PF04820.9 gi|385804768|ref|YP_005841168.1| - 0.016 13.8 0.9 0.038 12.6 0.3 1.8 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|385804768|ref|YP_005841168.1| - 0.023 14.4 0.1 0.06 13.1 0.1 1.7 1 0 0 1 1 1 0 FAD-NAD(P)-binding NAD_binding_2 PF03446.10 gi|385804768|ref|YP_005841168.1| - 0.045 13.5 0.1 0.1 12.4 0.1 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|385804768|ref|YP_005841168.1| - 0.045 13.3 0.4 0.076 12.6 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FMO-like PF00743.14 gi|385804768|ref|YP_005841168.1| - 0.074 11.2 0.0 0.1 10.7 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like Lycopene_cycl PF05834.7 gi|385804768|ref|YP_005841168.1| - 0.083 11.7 0.1 0.17 10.7 0.1 1.5 1 0 0 1 1 1 0 Lycopene cyclase protein ApbA PF02558.11 gi|385804768|ref|YP_005841168.1| - 0.12 11.8 1.6 0.23 10.8 1.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.14 gi|385804768|ref|YP_005841168.1| - 0.2 10.6 1.7 0.38 9.7 1.1 1.5 1 0 0 1 1 1 0 FAD binding domain GHMP_kinases_N PF00288.21 gi|385804769|ref|YP_005841169.1| - 5.2e-15 55.2 2.3 1.9e-14 53.4 1.6 2.1 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|385804769|ref|YP_005841169.1| - 1.1e-06 28.6 0.2 2.3e-06 27.6 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal Tubulin PF00091.20 gi|385804769|ref|YP_005841169.1| - 0.033 14.0 0.1 0.048 13.4 0.1 1.2 1 0 0 1 1 1 0 Tubulin/FtsZ family, GTPase domain SOR_SNZ PF01680.12 gi|385804770|ref|YP_005841170.1| - 1e-97 325.8 3.7 1.3e-97 325.4 2.6 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|385804770|ref|YP_005841170.1| - 1.2e-09 37.5 2.6 1.8e-06 27.2 0.4 2.3 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|385804770|ref|YP_005841170.1| - 0.01 14.7 0.2 0.074 11.8 0.1 2.1 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) IGPS PF00218.16 gi|385804770|ref|YP_005841170.1| - 0.011 14.7 0.0 0.062 12.3 0.0 2.0 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase OMPdecase PF00215.19 gi|385804770|ref|YP_005841170.1| - 0.059 12.7 0.1 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.9 gi|385804770|ref|YP_005841170.1| - 0.098 11.6 0.6 0.24 10.3 0.0 1.9 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase DUF1405 PF07187.6 gi|385804771|ref|YP_005841171.1| - 4e-51 173.0 16.2 4.7e-51 172.7 11.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) Ins_allergen_rp PF06757.8 gi|385804772|ref|YP_005841172.1| - 0.002 17.6 1.6 0.0032 16.9 1.1 1.3 1 0 0 1 1 1 1 Insect allergen related repeat, nitrile-specifier detoxification ADC PF06314.6 gi|385804772|ref|YP_005841172.1| - 0.13 11.5 0.2 0.19 11.0 0.1 1.2 1 0 0 1 1 1 0 Acetoacetate decarboxylase (ADC) DUF3311 PF11755.3 gi|385804774|ref|YP_005841174.1| - 2.9e-15 55.5 8.0 2.9e-15 55.5 5.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) Acyl_transf_3 PF01757.17 gi|385804774|ref|YP_005841174.1| - 0.11 11.2 6.7 0.13 11.0 4.7 1.0 1 0 0 1 1 1 0 Acyltransferase family UbiA PF01040.13 gi|385804774|ref|YP_005841174.1| - 0.47 9.6 7.9 0.6 9.2 5.5 1.0 1 0 0 1 1 1 0 UbiA prenyltransferase family Toprim_4 PF13662.1 gi|385804775|ref|YP_005841175.1| - 2.8e-09 36.8 0.1 9.6e-09 35.1 0.1 2.0 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.1 gi|385804775|ref|YP_005841175.1| - 0.016 15.5 0.0 0.042 14.1 0.0 1.7 1 0 0 1 1 1 0 Toprim-like Acetyltransf_1 PF00583.19 gi|385804776|ref|YP_005841176.1| - 8.6e-11 41.7 0.0 1.2e-10 41.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|385804776|ref|YP_005841176.1| - 7.4e-07 29.2 0.1 2.5e-06 27.5 0.0 1.9 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|385804776|ref|YP_005841176.1| - 0.00023 20.8 0.0 0.00042 20.0 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|385804776|ref|YP_005841176.1| - 0.0027 17.5 0.0 0.067 13.0 0.0 2.2 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|385804776|ref|YP_005841176.1| - 0.0029 17.4 0.0 0.0037 17.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|385804776|ref|YP_005841176.1| - 0.01 15.9 0.0 0.019 15.1 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF92 PF01940.11 gi|385804777|ref|YP_005841177.1| - 6.2e-65 218.5 14.3 6.2e-65 218.5 9.9 2.7 3 1 0 3 3 3 1 Integral membrane protein DUF92 DUF46 PF01864.12 gi|385804777|ref|YP_005841177.1| - 0.0051 16.7 2.9 0.0051 16.7 2.0 3.1 2 1 1 3 3 3 1 Putative integral membrane protein DUF46 Prenyltransf PF01255.14 gi|385804778|ref|YP_005841178.1| - 1.8e-27 95.9 0.0 7.3e-27 93.9 0.0 1.7 2 0 0 2 2 2 1 Putative undecaprenyl diphosphate synthase Prenyltransf PF01255.14 gi|385804779|ref|YP_005841179.1| - 2.6e-71 239.2 0.0 3.6e-71 238.8 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase DUF3744 PF12558.3 gi|385804781|ref|YP_005841181.1| - 0.083 13.3 0.0 0.47 10.9 0.0 2.1 2 0 0 2 2 2 0 ATP-binding cassette cobalt transporter IGR PF09597.5 gi|385804781|ref|YP_005841181.1| - 0.15 11.9 0.0 1.5 8.7 0.0 2.2 2 0 0 2 2 2 0 IGR protein motif NAD_binding_7 PF13241.1 gi|385804782|ref|YP_005841182.1| - 8.8e-23 80.5 0.0 2e-22 79.3 0.0 1.6 1 1 1 2 2 2 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.1 gi|385804782|ref|YP_005841182.1| - 9.1e-08 30.9 0.0 2.5e-07 29.5 0.0 1.8 1 0 0 1 1 1 1 Sirohaem biosynthesis protein central TrkA_N PF02254.13 gi|385804782|ref|YP_005841182.1| - 0.0035 17.3 0.1 0.017 15.1 0.1 2.1 1 1 0 1 1 1 1 TrkA-N domain PALP PF00291.20 gi|385804782|ref|YP_005841182.1| - 0.0036 16.5 0.1 0.0063 15.7 0.0 1.5 1 1 1 2 2 2 1 Pyridoxal-phosphate dependent enzyme GlutR_N PF05201.10 gi|385804783|ref|YP_005841183.1| - 7.2e-33 113.3 2.5 8.1e-33 113.1 0.1 2.3 3 0 0 3 3 3 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|385804783|ref|YP_005841183.1| - 3.5e-30 104.8 0.4 6.8e-30 103.9 0.3 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|385804783|ref|YP_005841183.1| - 9.3e-21 73.6 3.4 1.9e-20 72.6 2.3 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.12 gi|385804783|ref|YP_005841183.1| - 1e-05 25.8 0.3 1e-05 25.8 0.2 2.6 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|385804783|ref|YP_005841183.1| - 5.2e-05 22.3 0.1 0.00011 21.3 0.0 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_2 PF03446.10 gi|385804783|ref|YP_005841183.1| - 8.1e-05 22.5 0.1 0.00023 21.0 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|385804783|ref|YP_005841183.1| - 0.00018 20.7 0.1 0.00037 19.6 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|385804783|ref|YP_005841183.1| - 0.00042 20.5 0.2 0.0045 17.2 0.0 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|385804783|ref|YP_005841183.1| - 0.0056 16.4 0.1 0.011 15.4 0.1 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.13 gi|385804783|ref|YP_005841183.1| - 0.0066 16.4 0.8 0.017 15.0 0.3 2.0 1 1 0 1 1 1 1 TrkA-N domain zf-C4H2 PF10146.4 gi|385804783|ref|YP_005841183.1| - 0.0098 15.9 1.2 0.0098 15.9 0.8 1.6 2 0 0 2 2 1 1 Zinc finger-containing protein 3HCDH_N PF02737.13 gi|385804783|ref|YP_005841183.1| - 0.017 14.8 0.1 0.017 14.8 0.1 2.5 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|385804783|ref|YP_005841183.1| - 0.017 14.5 0.1 0.18 11.2 0.0 2.3 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA ThiF PF00899.16 gi|385804783|ref|YP_005841183.1| - 0.021 14.6 2.5 0.065 13.0 0.1 2.8 2 2 0 2 2 2 0 ThiF family AdoHcyase_NAD PF00670.16 gi|385804783|ref|YP_005841183.1| - 0.031 14.1 0.4 0.062 13.1 0.3 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CPSase_L_chain PF00289.17 gi|385804783|ref|YP_005841183.1| - 0.031 14.3 0.3 0.1 12.6 0.2 1.9 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain DapB_N PF01113.15 gi|385804783|ref|YP_005841183.1| - 0.046 13.6 1.1 0.26 11.1 0.0 2.7 3 1 0 3 3 3 0 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|385804783|ref|YP_005841183.1| - 0.052 14.0 0.7 0.17 12.4 0.0 2.1 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold End3 PF12761.2 gi|385804783|ref|YP_005841183.1| - 0.068 12.8 2.9 0.11 12.0 2.0 1.3 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 Peptidase_C58 PF03543.9 gi|385804783|ref|YP_005841183.1| - 1.2 8.6 3.1 5.2 6.5 2.2 1.9 2 1 0 2 2 2 0 Yersinia/Haemophilus virulence surface antigen Pterin_4a PF01329.14 gi|385804784|ref|YP_005841184.1| - 1.2e-24 85.8 0.0 1.2e-24 85.8 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase HAD_2 PF13419.1 gi|385804785|ref|YP_005841185.1| - 4e-23 82.5 0.0 5e-23 82.2 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|385804785|ref|YP_005841185.1| - 1.5e-07 32.0 0.0 9.5e-06 26.1 0.0 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|385804785|ref|YP_005841185.1| - 5.6e-07 29.9 0.0 9.4e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|385804785|ref|YP_005841185.1| - 0.0083 15.8 0.0 0.016 14.8 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like MoeA_N PF03453.12 gi|385804786|ref|YP_005841186.1| - 3.2e-45 153.3 2.5 5e-45 152.7 1.7 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|385804786|ref|YP_005841186.1| - 4e-27 94.3 0.1 6.4e-27 93.7 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.2 gi|385804786|ref|YP_005841186.1| - 6.4e-18 64.3 0.5 3.5e-17 62.0 0.0 2.4 2 1 0 2 2 2 1 PBP superfamily domain MoeA_C PF03454.10 gi|385804786|ref|YP_005841186.1| - 9e-14 51.1 0.3 9.8e-13 47.8 0.1 2.5 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) MoeA_N PF03453.12 gi|385804787|ref|YP_005841187.1| - 1.7e-40 138.0 0.6 2.8e-40 137.3 0.4 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|385804787|ref|YP_005841187.1| - 6.3e-27 93.7 0.2 1.2e-26 92.8 0.2 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|385804787|ref|YP_005841187.1| - 7.3e-14 51.4 4.9 2e-12 46.8 0.4 3.7 3 1 0 3 3 3 1 MoeA C-terminal region (domain IV) HSP20 PF00011.16 gi|385804788|ref|YP_005841188.1| - 5.6e-11 42.2 0.0 6.6e-11 41.9 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family PIH1 PF08190.7 gi|385804788|ref|YP_005841188.1| - 0.017 14.5 0.0 0.023 14.1 0.0 1.1 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 ABC1 PF03109.11 gi|385804789|ref|YP_005841189.1| - 2.3e-27 95.3 0.0 7.8e-27 93.6 0.0 1.8 2 0 0 2 2 2 1 ABC1 family APH PF01636.18 gi|385804789|ref|YP_005841189.1| - 8.9e-05 22.3 0.2 0.046 13.4 0.0 3.0 1 1 0 2 2 2 2 Phosphotransferase enzyme family DUF1469 PF07332.6 gi|385804789|ref|YP_005841189.1| - 0.0044 16.7 0.2 0.018 14.7 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1469) RIO1 PF01163.17 gi|385804789|ref|YP_005841189.1| - 0.016 14.5 0.0 0.047 13.0 0.0 1.7 2 0 0 2 2 2 0 RIO1 family Pkinase PF00069.20 gi|385804789|ref|YP_005841189.1| - 0.023 13.8 0.0 0.1 11.7 0.0 1.9 2 0 0 2 2 2 0 Protein kinase domain eIF-5a PF01287.15 gi|385804790|ref|YP_005841190.1| - 5.6e-06 26.2 0.5 1.5e-05 24.8 0.4 1.8 1 1 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|385804790|ref|YP_005841190.1| - 0.032 14.0 0.0 0.066 13.0 0.0 1.5 1 0 0 1 1 1 0 Elongation factor P (EF-P) KOW-like domain Arginase PF00491.16 gi|385804791|ref|YP_005841191.1| - 1.8e-57 194.7 1.9 2.1e-57 194.5 1.3 1.0 1 0 0 1 1 1 1 Arginase family SurE PF01975.12 gi|385804792|ref|YP_005841192.1| - 4.6e-44 150.0 0.3 5.8e-44 149.7 0.2 1.1 1 0 0 1 1 1 1 Survival protein SurE Methyltransf_23 PF13489.1 gi|385804793|ref|YP_005841193.1| - 1.7e-05 24.5 0.0 3.6e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|385804793|ref|YP_005841193.1| - 3.4e-05 24.2 0.0 9e-05 22.8 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|385804793|ref|YP_005841193.1| - 0.0002 21.6 0.0 0.00041 20.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385804793|ref|YP_005841193.1| - 0.0031 18.0 0.0 0.012 16.1 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain PALP PF00291.20 gi|385804793|ref|YP_005841193.1| - 0.02 14.1 0.0 0.034 13.3 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme Methyltransf_31 PF13847.1 gi|385804793|ref|YP_005841193.1| - 0.041 13.4 0.0 0.082 12.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Rsm22 PF09243.5 gi|385804793|ref|YP_005841193.1| - 0.058 12.4 0.0 0.095 11.7 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial small ribosomal subunit Rsm22 PCMT PF01135.14 gi|385804793|ref|YP_005841193.1| - 0.1 12.1 0.0 0.23 10.9 0.0 1.6 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.7 gi|385804793|ref|YP_005841193.1| - 0.14 12.6 0.0 0.46 11.0 0.0 2.0 1 0 0 1 1 1 0 Methyltransferase domain PDH PF02153.12 gi|385804794|ref|YP_005841194.1| - 7.2e-10 38.1 4.2 1.1e-08 34.3 2.9 2.0 1 1 0 1 1 1 1 Prephenate dehydrogenase Gp_dh_N PF00044.19 gi|385804794|ref|YP_005841194.1| - 3.7e-05 23.7 0.2 0.00093 19.1 0.0 2.1 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|385804794|ref|YP_005841194.1| - 0.00017 21.3 0.2 0.00017 21.3 0.2 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|385804794|ref|YP_005841194.1| - 0.00035 20.6 0.3 0.00067 19.7 0.2 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.11 gi|385804794|ref|YP_005841194.1| - 0.00068 19.1 0.0 0.0011 18.4 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|385804794|ref|YP_005841194.1| - 0.0021 18.4 1.9 0.0057 17.0 0.2 2.3 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|385804794|ref|YP_005841194.1| - 0.0022 17.9 0.1 0.0077 16.2 0.1 2.1 1 1 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.1 gi|385804794|ref|YP_005841194.1| - 0.0085 16.3 1.1 0.015 15.5 0.2 1.8 2 0 0 2 2 2 1 Putative NAD(P)-binding Saccharop_dh PF03435.13 gi|385804794|ref|YP_005841194.1| - 0.014 14.4 0.1 0.024 13.6 0.1 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NAD_binding_2 PF03446.10 gi|385804794|ref|YP_005841194.1| - 0.073 12.9 0.8 0.26 11.1 0.1 2.1 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase ThiF PF00899.16 gi|385804794|ref|YP_005841194.1| - 0.076 12.8 1.2 0.27 11.0 0.8 2.1 1 1 0 1 1 1 0 ThiF family DapB_N PF01113.15 gi|385804794|ref|YP_005841194.1| - 0.078 12.9 0.6 0.17 11.7 0.1 1.9 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|385804794|ref|YP_005841194.1| - 0.24 11.9 2.2 0.81 10.2 0.9 2.5 1 1 1 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Peptidase_M24 PF00557.19 gi|385804795|ref|YP_005841195.1| - 9.2e-39 133.1 0.5 1.2e-38 132.7 0.3 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|385804795|ref|YP_005841195.1| - 1.3e-06 28.8 1.1 3.3e-06 27.6 0.1 2.0 1 1 1 2 2 2 1 Creatinase/Prolidase N-terminal domain HTH_24 PF13412.1 gi|385804796|ref|YP_005841196.1| - 1.4e-13 50.0 0.1 2.6e-13 49.1 0.0 1.5 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|385804796|ref|YP_005841196.1| - 3.1e-09 36.3 0.0 5.8e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|385804796|ref|YP_005841196.1| - 1.5e-08 34.0 0.0 3.2e-08 32.9 0.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|385804796|ref|YP_005841196.1| - 4.2e-07 29.5 0.1 8.5e-06 25.3 0.0 2.5 3 0 0 3 3 3 1 MarR family HTH_20 PF12840.2 gi|385804796|ref|YP_005841196.1| - 6e-07 29.1 0.0 1.5e-06 27.8 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain MarR PF01047.17 gi|385804796|ref|YP_005841196.1| - 6.1e-07 29.0 0.0 3.5e-06 26.6 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|385804796|ref|YP_005841196.1| - 1.4e-06 27.7 0.0 2.6e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|385804796|ref|YP_005841196.1| - 2.8e-06 27.1 0.0 8.7e-06 25.5 0.0 1.9 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|385804796|ref|YP_005841196.1| - 3.8e-06 26.4 0.0 8.5e-06 25.3 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|385804796|ref|YP_005841196.1| - 1.7e-05 24.3 0.0 2.9e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.15 gi|385804796|ref|YP_005841196.1| - 3.1e-05 23.5 0.0 5.7e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|385804796|ref|YP_005841196.1| - 3.9e-05 23.5 0.0 6.9e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|385804796|ref|YP_005841196.1| - 5.1e-05 22.7 0.0 9.8e-05 21.8 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_36 PF13730.1 gi|385804796|ref|YP_005841196.1| - 0.00017 21.6 0.0 0.0003 20.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|385804796|ref|YP_005841196.1| - 0.0003 20.4 0.3 0.00058 19.5 0.0 1.6 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|385804796|ref|YP_005841196.1| - 0.00049 20.1 0.0 0.0018 18.3 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator HTH_6 PF01418.12 gi|385804796|ref|YP_005841196.1| - 0.00055 19.6 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family HTH_10 PF04967.7 gi|385804796|ref|YP_005841196.1| - 0.00073 19.0 0.1 0.0014 18.1 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_29 PF13551.1 gi|385804796|ref|YP_005841196.1| - 0.0009 19.3 0.0 0.0011 19.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_27 PF13463.1 gi|385804796|ref|YP_005841196.1| - 0.001 19.3 0.0 0.0017 18.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MerR PF00376.18 gi|385804796|ref|YP_005841196.1| - 0.003 17.0 0.4 0.098 12.2 0.0 2.5 2 0 0 2 2 2 1 MerR family regulatory protein LacI PF00356.16 gi|385804796|ref|YP_005841196.1| - 0.0038 16.8 0.0 0.0094 15.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family Sigma70_r4_2 PF08281.7 gi|385804796|ref|YP_005841196.1| - 0.0041 16.5 0.1 0.0078 15.6 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 TetR_N PF00440.18 gi|385804796|ref|YP_005841196.1| - 0.011 15.2 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_45 PF14947.1 gi|385804796|ref|YP_005841196.1| - 0.016 15.0 0.0 0.026 14.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix TFIIE_alpha PF02002.12 gi|385804796|ref|YP_005841196.1| - 0.021 14.3 0.1 0.028 13.8 0.1 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit EAP30 PF04157.11 gi|385804796|ref|YP_005841196.1| - 0.029 13.5 0.0 0.041 13.0 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family FeoC PF09012.5 gi|385804796|ref|YP_005841196.1| - 0.031 13.9 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator GntR PF00392.16 gi|385804796|ref|YP_005841196.1| - 0.031 13.6 0.0 0.086 12.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_38 PF13936.1 gi|385804796|ref|YP_005841196.1| - 0.034 13.7 0.0 0.061 12.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.7 gi|385804796|ref|YP_005841196.1| - 0.049 13.7 0.0 0.084 13.0 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein DUF2250 PF10007.4 gi|385804796|ref|YP_005841196.1| - 0.053 13.4 0.0 0.09 12.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_3 PF01381.17 gi|385804796|ref|YP_005841196.1| - 0.062 13.1 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_1 PF00126.22 gi|385804796|ref|YP_005841196.1| - 0.066 12.9 0.1 0.27 11.0 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.1 gi|385804796|ref|YP_005841196.1| - 0.068 12.7 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|385804796|ref|YP_005841196.1| - 0.071 13.0 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Transposase HTH_34 PF13601.1 gi|385804796|ref|YP_005841196.1| - 0.071 13.1 0.0 0.13 12.3 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_17 PF12728.2 gi|385804796|ref|YP_005841196.1| - 0.072 13.3 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|385804796|ref|YP_005841196.1| - 0.089 12.5 0.0 0.42 10.4 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Methyltransf_14 PF08484.6 gi|385804796|ref|YP_005841196.1| - 0.091 12.3 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 C-methyltransferase C-terminal domain DUF2913 PF11140.3 gi|385804796|ref|YP_005841196.1| - 0.11 11.7 0.0 0.18 11.0 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2913) Phage_NinH PF06322.6 gi|385804796|ref|YP_005841196.1| - 0.13 11.8 0.2 0.28 10.8 0.0 1.6 2 0 0 2 2 1 0 Phage NinH protein TPP_enzyme_C PF02775.16 gi|385804797|ref|YP_005841197.1| - 4.8e-31 107.4 0.2 6.8e-31 106.9 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR PF01558.13 gi|385804798|ref|YP_005841198.1| - 2.8e-53 180.3 0.0 5.1e-53 179.5 0.0 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase POR_N PF01855.14 gi|385804798|ref|YP_005841198.1| - 1.6e-49 168.5 0.1 3.9e-49 167.2 0.1 1.6 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.13 gi|385804798|ref|YP_005841198.1| - 3e-06 26.8 0.1 6.2e-06 25.8 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Chorismate_synt PF01264.16 gi|385804799|ref|YP_005841199.1| - 5.2e-127 423.0 0.0 6e-127 422.8 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase EPSP_synthase PF00275.15 gi|385804800|ref|YP_005841200.1| - 1.6e-102 343.0 0.6 1.9e-102 342.8 0.4 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SLA_LP_auto_ag PF05889.8 gi|385804800|ref|YP_005841200.1| - 0.077 11.4 0.0 0.12 10.8 0.0 1.2 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) IMS PF00817.15 gi|385804801|ref|YP_005841201.1| - 2e-36 125.0 0.0 4e-36 124.0 0.0 1.5 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.3 gi|385804801|ref|YP_005841201.1| - 5.1e-14 52.2 0.0 1.2e-13 51.0 0.0 1.6 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.3 gi|385804801|ref|YP_005841201.1| - 4.2e-07 29.6 0.0 8.4e-07 28.6 0.0 1.6 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.1 gi|385804801|ref|YP_005841201.1| - 8e-05 22.7 0.0 0.00021 21.3 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|385804801|ref|YP_005841201.1| - 0.00025 20.5 0.0 0.00051 19.5 0.0 1.5 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda TIM PF00121.13 gi|385804802|ref|YP_005841202.1| - 1.1e-22 80.2 0.1 2.6e-20 72.5 0.1 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|385804802|ref|YP_005841202.1| - 0.0019 17.3 0.9 0.0019 17.3 0.6 1.8 2 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.13 gi|385804802|ref|YP_005841202.1| - 0.011 14.5 2.1 0.017 13.9 1.4 1.5 1 1 0 1 1 1 0 FMN-dependent dehydrogenase Hydrolase_like PF13242.1 gi|385804802|ref|YP_005841202.1| - 0.021 14.5 0.9 0.038 13.7 0.1 1.9 2 0 0 2 2 2 0 HAD-hyrolase-like Pax2_C PF12403.3 gi|385804802|ref|YP_005841202.1| - 0.077 12.6 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Paired-box protein 2 C terminal HTH_3 PF01381.17 gi|385804803|ref|YP_005841203.1| - 8.7e-09 35.1 0.8 1.4e-08 34.4 0.6 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|385804803|ref|YP_005841203.1| - 7e-08 32.5 0.5 1.1e-07 31.8 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|385804803|ref|YP_005841203.1| - 1.2e-06 28.4 0.4 2.7e-06 27.3 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|385804803|ref|YP_005841203.1| - 5.2e-05 22.7 1.9 8e-05 22.2 1.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain RAP1 PF07218.6 gi|385804803|ref|YP_005841203.1| - 0.35 8.9 5.0 0.34 8.9 3.5 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) SSP160 PF06933.6 gi|385804803|ref|YP_005841203.1| - 2.4 6.0 10.8 3.1 5.6 7.5 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 CDP-OH_P_transf PF01066.16 gi|385804804|ref|YP_005841204.1| - 5.5e-12 45.8 11.2 2.8e-11 43.5 7.8 2.1 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase AAA_18 PF13238.1 gi|385804805|ref|YP_005841205.1| - 2.1e-17 63.6 0.0 3.5e-17 62.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|385804805|ref|YP_005841205.1| - 9.5e-09 36.1 0.1 1.6e-08 35.3 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|385804805|ref|YP_005841205.1| - 0.00071 19.2 0.2 0.0019 17.8 0.1 1.8 2 0 0 2 2 2 1 Part of AAA domain AAA_22 PF13401.1 gi|385804805|ref|YP_005841205.1| - 0.0068 16.5 0.3 0.012 15.7 0.2 1.6 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|385804805|ref|YP_005841205.1| - 0.014 15.2 0.1 0.046 13.5 0.0 1.7 2 0 0 2 2 2 0 Shikimate kinase CPT PF07931.7 gi|385804805|ref|YP_005841205.1| - 0.018 14.6 0.7 0.024 14.2 0.5 1.5 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_33 PF13671.1 gi|385804805|ref|YP_005841205.1| - 0.02 14.7 1.2 0.29 10.9 0.8 2.6 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|385804805|ref|YP_005841205.1| - 0.028 14.1 0.2 0.087 12.5 0.0 1.9 2 0 0 2 2 2 0 NTPase AAA_30 PF13604.1 gi|385804805|ref|YP_005841205.1| - 0.056 13.0 0.0 0.099 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|385804805|ref|YP_005841205.1| - 0.072 13.0 4.4 0.1 12.5 2.2 2.0 1 1 1 2 2 2 0 AAA domain FlpD PF02662.11 gi|385804805|ref|YP_005841205.1| - 0.11 12.1 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Methyl-viologen-reducing hydrogenase, delta subunit AAA PF00004.24 gi|385804805|ref|YP_005841205.1| - 0.29 11.3 2.2 1.2 9.3 0.9 2.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Aminotran_1_2 PF00155.16 gi|385804806|ref|YP_005841206.1| - 8e-61 205.9 0.0 9.1e-61 205.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DUF3798 PF12683.2 gi|385804806|ref|YP_005841206.1| - 0.0064 15.6 0.0 0.0097 15.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3798) Alliinase_C PF04864.8 gi|385804806|ref|YP_005841206.1| - 0.011 14.4 0.0 0.019 13.6 0.0 1.4 1 0 0 1 1 1 0 Allinase Cys_Met_Meta_PP PF01053.15 gi|385804806|ref|YP_005841206.1| - 0.018 13.3 0.0 0.041 12.1 0.0 1.5 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme FTR PF01913.13 gi|385804806|ref|YP_005841206.1| - 0.041 13.6 0.1 0.098 12.3 0.1 1.6 1 0 0 1 1 1 0 Formylmethanofuran-tetrahydromethanopterin formyltransferase Vif PF00559.12 gi|385804806|ref|YP_005841206.1| - 0.063 13.1 0.3 0.36 10.6 0.0 1.9 2 0 0 2 2 2 0 Retroviral Vif (Viral infectivity) protein GMC_oxred_C PF05199.8 gi|385804807|ref|YP_005841207.1| - 3.4e-25 89.0 0.6 1e-24 87.4 0.4 1.9 1 1 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.14 gi|385804807|ref|YP_005841207.1| - 7.9e-15 54.7 0.0 1.4e-14 53.9 0.0 1.4 1 0 0 1 1 1 1 GMC oxidoreductase DAO PF01266.19 gi|385804807|ref|YP_005841207.1| - 2.1e-10 40.0 0.5 1.1e-06 27.8 0.0 2.7 3 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|385804807|ref|YP_005841207.1| - 3.7e-09 35.9 0.2 0.00064 18.6 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.1 gi|385804807|ref|YP_005841207.1| - 1.1e-06 28.6 0.0 3.7e-06 26.8 0.0 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|385804807|ref|YP_005841207.1| - 6e-06 25.4 0.1 9.5e-06 24.7 0.0 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein Thi4 PF01946.12 gi|385804807|ref|YP_005841207.1| - 8.4e-06 25.0 0.0 1.8e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.9 gi|385804807|ref|YP_005841207.1| - 2.5e-05 24.2 0.0 0.0028 17.5 0.0 2.8 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|385804807|ref|YP_005841207.1| - 0.00023 20.3 0.2 0.00072 18.7 0.0 1.8 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|385804807|ref|YP_005841207.1| - 0.00065 18.2 0.3 0.0017 16.8 0.0 1.7 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|385804807|ref|YP_005841207.1| - 0.007 16.4 0.0 0.021 14.8 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_7 PF12838.2 gi|385804807|ref|YP_005841207.1| - 0.01 16.2 0.7 0.031 14.6 0.5 1.8 1 0 0 1 1 1 0 4Fe-4S dicluster domain 3HCDH_N PF02737.13 gi|385804807|ref|YP_005841207.1| - 0.021 14.4 0.0 0.041 13.5 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.17 gi|385804807|ref|YP_005841207.1| - 0.022 13.6 0.1 0.38 9.5 0.0 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A ApbA PF02558.11 gi|385804807|ref|YP_005841207.1| - 0.024 14.0 0.0 0.068 12.6 0.0 1.8 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_9 PF13454.1 gi|385804807|ref|YP_005841207.1| - 0.028 14.1 0.0 0.072 12.8 0.0 1.7 2 0 0 2 2 2 0 FAD-NAD(P)-binding Shikimate_DH PF01488.15 gi|385804807|ref|YP_005841207.1| - 0.037 14.1 0.0 0.063 13.3 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Gluconate_2-dh3 PF13618.1 gi|385804808|ref|YP_005841208.1| - 8.1e-12 45.4 0.0 1.1e-11 44.9 0.0 1.2 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 TAT_signal PF10518.4 gi|385804808|ref|YP_005841208.1| - 0.0052 16.6 0.5 0.015 15.2 0.3 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|385804808|ref|YP_005841208.1| - 0.076 12.2 0.3 0.076 12.2 0.2 2.1 3 0 0 3 3 3 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal FAA_hydrolase PF01557.13 gi|385804809|ref|YP_005841209.1| - 3.2e-64 216.3 0.1 4e-64 216.0 0.1 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Lactamase_B_3 PF13483.1 gi|385804810|ref|YP_005841210.1| - 1.6e-23 83.1 1.5 2.1e-23 82.8 1.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|385804810|ref|YP_005841210.1| - 1.7e-17 63.6 1.1 2.1e-17 63.3 0.8 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|385804810|ref|YP_005841210.1| - 2.4e-11 43.6 9.2 5.8e-11 42.4 6.2 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Hydrolase_6 PF13344.1 gi|385804811|ref|YP_005841211.1| - 2.8e-22 78.5 0.0 5.3e-22 77.6 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|385804811|ref|YP_005841211.1| - 2.2e-18 65.7 0.0 4.5e-18 64.7 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD_2 PF13419.1 gi|385804811|ref|YP_005841211.1| - 4.7e-07 30.2 0.2 8e-05 22.9 0.0 2.7 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|385804811|ref|YP_005841211.1| - 3e-06 27.8 1.5 3.7e-05 24.2 1.1 2.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.5 gi|385804811|ref|YP_005841211.1| - 0.00037 19.8 0.1 0.001 18.4 0.1 1.8 1 0 0 1 1 1 1 Mitochondrial PGP phosphatase zf-TFIIB PF13453.1 gi|385804812|ref|YP_005841212.1| - 0.00073 18.6 10.3 0.014 14.6 1.6 3.1 2 1 1 3 3 3 1 Transcription factor zinc-finger zf-CHY PF05495.7 gi|385804812|ref|YP_005841212.1| - 0.12 12.5 4.0 0.36 11.0 0.9 2.1 1 1 1 2 2 2 0 CHY zinc finger zf-RING_3 PF14369.1 gi|385804812|ref|YP_005841212.1| - 0.12 12.3 11.1 0.36 10.8 0.1 4.0 3 1 1 4 4 4 0 zinc-finger Stc1 PF12898.2 gi|385804812|ref|YP_005841212.1| - 0.17 11.9 2.1 0.17 11.9 0.2 1.8 1 1 1 2 2 2 0 Stc1 domain HypA PF01155.14 gi|385804812|ref|YP_005841212.1| - 0.17 11.5 6.7 1 9.1 1.5 2.8 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|385804812|ref|YP_005841212.1| - 0.19 11.5 7.6 8.6 6.2 5.5 2.8 1 1 1 2 2 2 0 Double zinc ribbon RPA_interact_C PF14768.1 gi|385804812|ref|YP_005841212.1| - 0.26 11.6 6.4 0.84 10.0 0.1 2.8 2 1 1 3 3 3 0 Replication protein A interacting C-terminal zinc-ribbons_6 PF07191.7 gi|385804812|ref|YP_005841212.1| - 0.29 10.9 7.8 2.2 8.1 2.8 2.6 1 1 1 2 2 2 0 zinc-ribbons zf-C3HC4_3 PF13920.1 gi|385804812|ref|YP_005841212.1| - 0.55 9.9 9.1 20 4.9 3.8 3.0 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Opy2 PF09463.5 gi|385804812|ref|YP_005841212.1| - 0.63 10.1 10.6 7.1 6.8 0.2 3.9 4 0 0 4 4 4 0 Opy2 protein OrfB_Zn_ribbon PF07282.6 gi|385804812|ref|YP_005841212.1| - 0.67 9.6 9.2 0.14 11.8 0.7 2.6 1 1 2 3 3 3 0 Putative transposase DNA-binding domain Zn_Tnp_IS1 PF03811.8 gi|385804812|ref|YP_005841212.1| - 0.75 9.3 15.6 0.58 9.6 0.2 3.8 4 0 0 4 4 4 0 InsA N-terminal domain zf-Di19 PF05605.7 gi|385804812|ref|YP_005841212.1| - 0.8 9.8 6.0 23 5.2 1.4 3.3 2 1 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-C4_Topoisom PF01396.14 gi|385804812|ref|YP_005841212.1| - 0.91 9.0 7.1 13 5.3 0.0 3.5 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger Mu-like_Com PF10122.4 gi|385804812|ref|YP_005841212.1| - 1 8.5 5.9 17 4.5 0.2 3.1 2 1 1 3 3 3 0 Mu-like prophage protein Com DUF2387 PF09526.5 gi|385804812|ref|YP_005841212.1| - 1.2 9.1 8.9 5 7.1 0.2 2.5 2 1 0 2 2 2 0 Probable metal-binding protein (DUF2387) zinc_ribbon_5 PF13719.1 gi|385804812|ref|YP_005841212.1| - 1.2 8.7 13.5 2.9 7.5 1.9 3.8 3 1 0 3 3 3 0 zinc-ribbon domain IBR PF01485.16 gi|385804812|ref|YP_005841212.1| - 2.8 7.8 8.5 3.6e+02 1.1 5.9 2.7 1 1 0 1 1 1 0 IBR domain zinc_ribbon_4 PF13717.1 gi|385804812|ref|YP_005841212.1| - 3.9 7.2 14.4 3.3 7.4 2.1 3.8 3 1 0 3 3 3 0 zinc-ribbon domain TerY-C PF15616.1 gi|385804812|ref|YP_005841212.1| - 5.6 6.9 6.6 22 5.0 1.9 2.9 1 1 1 2 2 2 0 TerY-C metal binding domain YdjO PF14169.1 gi|385804812|ref|YP_005841212.1| - 9.5 5.7 7.8 1.7 8.1 0.2 2.8 1 1 2 3 3 3 0 Cold-inducible protein YdjO zf-ribbon_3 PF13248.1 gi|385804812|ref|YP_005841212.1| - 9.7 5.5 7.3 18 4.7 0.0 3.6 4 0 0 4 4 4 0 zinc-ribbon domain dCMP_cyt_deam_1 PF00383.17 gi|385804813|ref|YP_005841213.1| - 1e-14 54.0 0.0 1.3e-14 53.6 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.1 gi|385804813|ref|YP_005841213.1| - 0.0072 15.9 0.0 0.0093 15.6 0.0 1.2 1 0 0 1 1 1 1 MafB19-like deaminase XOO_2897-deam PF14440.1 gi|385804813|ref|YP_005841213.1| - 0.077 12.7 0.1 0.099 12.3 0.0 1.2 1 0 0 1 1 1 0 Xanthomonas XOO_2897-like deaminase Bd3614-deam PF14439.1 gi|385804813|ref|YP_005841213.1| - 0.15 11.9 0.4 0.28 11.0 0.2 1.5 1 1 0 1 1 1 0 Bd3614-like deaminase LTD PF00932.14 gi|385804814|ref|YP_005841214.1| - 1.2e-21 76.8 3.1 1.2e-21 76.8 2.2 2.3 3 0 0 3 3 3 1 Lamin Tail Domain SNase PF00565.12 gi|385804814|ref|YP_005841214.1| - 3.4e-18 65.8 0.0 5.3e-18 65.2 0.0 1.3 1 0 0 1 1 1 1 Staphylococcal nuclease homologue DUF4249 PF14054.1 gi|385804814|ref|YP_005841214.1| - 0.0034 16.7 0.4 0.0034 16.7 0.3 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4249) OrfB_IS605 PF01385.14 gi|385804817|ref|YP_005841217.1| - 7.3e-60 202.1 2.5 9.6e-60 201.8 1.8 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|385804817|ref|YP_005841217.1| - 2.2e-13 49.6 2.3 7.7e-13 47.8 1.6 2.0 1 1 0 1 1 1 1 Putative transposase DNA-binding domain BPD_transp_1 PF00528.17 gi|385804818|ref|YP_005841218.1| - 1.7e-14 53.7 21.6 1.7e-14 53.7 15.0 2.4 1 1 2 3 3 3 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|385804819|ref|YP_005841219.1| - 1.7e-08 34.2 26.1 2.5e-07 30.3 18.1 2.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component FliP PF00813.15 gi|385804819|ref|YP_005841219.1| - 1 9.0 10.0 0.12 12.0 0.8 2.5 2 1 1 3 3 3 0 FliP family ABC_tran PF00005.22 gi|385804820|ref|YP_005841220.1| - 2.5e-35 121.7 0.0 4.5e-35 120.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385804820|ref|YP_005841220.1| - 7e-12 45.8 0.0 6e-07 29.7 0.0 2.3 1 1 1 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|385804820|ref|YP_005841220.1| - 1.5e-05 24.9 0.1 0.00084 19.2 0.0 3.3 2 1 1 3 3 3 1 TOBE domain SMC_N PF02463.14 gi|385804820|ref|YP_005841220.1| - 0.0002 20.6 0.1 0.021 14.0 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|385804820|ref|YP_005841220.1| - 0.00034 21.4 0.0 0.00068 20.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|385804820|ref|YP_005841220.1| - 0.00043 20.3 0.4 0.00098 19.1 0.3 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|385804820|ref|YP_005841220.1| - 0.0011 19.1 0.2 0.0044 17.1 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|385804820|ref|YP_005841220.1| - 0.0053 16.9 0.3 0.031 14.4 0.2 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|385804820|ref|YP_005841220.1| - 0.0067 16.3 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|385804820|ref|YP_005841220.1| - 0.016 15.5 0.1 0.035 14.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|385804820|ref|YP_005841220.1| - 0.02 14.0 0.0 0.045 12.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|385804820|ref|YP_005841220.1| - 0.021 15.1 0.0 0.056 13.7 0.0 1.8 2 0 0 2 2 1 0 AAA domain Rad17 PF03215.10 gi|385804820|ref|YP_005841220.1| - 0.021 13.4 0.0 0.03 13.0 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_33 PF13671.1 gi|385804820|ref|YP_005841220.1| - 0.031 14.1 0.0 0.07 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|385804820|ref|YP_005841220.1| - 0.042 13.5 0.0 0.096 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|385804820|ref|YP_005841220.1| - 0.054 13.0 0.0 0.15 11.6 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain DAP10 PF07213.6 gi|385804820|ref|YP_005841220.1| - 0.062 13.0 0.0 1.9 8.3 0.0 2.3 2 0 0 2 2 2 0 DAP10 membrane protein Mg_chelatase PF01078.16 gi|385804820|ref|YP_005841220.1| - 0.075 12.1 0.0 0.25 10.4 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_15 PF13175.1 gi|385804820|ref|YP_005841220.1| - 0.087 11.8 0.0 3.6 6.5 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain SBP_bac_8 PF13416.1 gi|385804821|ref|YP_005841221.1| - 1.6e-16 60.9 0.0 2.1e-16 60.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|385804821|ref|YP_005841221.1| - 5.9e-11 42.1 0.1 6.9e-10 38.6 0.1 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|385804821|ref|YP_005841221.1| - 7.5e-10 39.0 0.1 1.4e-09 38.1 0.1 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Ribosomal_S10 PF00338.17 gi|385804822|ref|YP_005841222.1| - 1.9e-28 98.1 0.0 2.1e-28 98.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|385804823|ref|YP_005841223.1| - 1.4e-57 194.1 0.0 1.9e-57 193.7 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|385804823|ref|YP_005841223.1| - 9e-31 105.9 0.1 3.5e-30 104.1 0.0 2.0 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|385804823|ref|YP_005841223.1| - 8.6e-18 64.2 4.2 4.5e-17 61.9 1.4 2.6 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|385804823|ref|YP_005841223.1| - 2e-07 30.9 0.0 3.9e-07 30.0 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.1 gi|385804823|ref|YP_005841223.1| - 1.6e-06 27.6 0.1 5.9e-06 25.8 0.1 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Miro PF08477.8 gi|385804823|ref|YP_005841223.1| - 4.3e-05 23.9 0.0 0.0012 19.2 0.0 2.9 2 1 0 2 2 2 1 Miro-like protein Gtr1_RagA PF04670.7 gi|385804823|ref|YP_005841223.1| - 0.00073 18.7 0.0 0.074 12.1 0.0 2.2 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region SRPRB PF09439.5 gi|385804823|ref|YP_005841223.1| - 0.018 14.2 0.0 0.5 9.5 0.0 2.2 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Dynamin_N PF00350.18 gi|385804823|ref|YP_005841223.1| - 0.026 14.3 0.1 6.3 6.5 0.0 2.4 1 1 1 2 2 2 0 Dynamin family FeoB_N PF02421.13 gi|385804823|ref|YP_005841223.1| - 0.029 13.6 0.2 0.48 9.6 0.1 2.5 2 1 0 2 2 2 0 Ferrous iron transport protein B Septin PF00735.13 gi|385804823|ref|YP_005841223.1| - 0.086 11.8 0.0 0.2 10.6 0.0 1.5 1 0 0 1 1 1 0 Septin Hemolysin_N PF12563.3 gi|385804823|ref|YP_005841223.1| - 0.15 11.5 0.1 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 Hemolytic toxin N terminal Homoserine_dh PF00742.14 gi|385804824|ref|YP_005841224.1| - 1.7e-48 164.6 0.3 2.5e-48 164.0 0.2 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase ELFV_dehydrog PF00208.16 gi|385804824|ref|YP_005841224.1| - 1.2e-09 38.0 0.1 3.5e-09 36.6 0.1 1.7 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_3 PF03447.11 gi|385804824|ref|YP_005841224.1| - 0.00057 20.2 0.1 0.0013 19.1 0.1 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|385804824|ref|YP_005841224.1| - 0.003 16.7 0.0 0.0057 15.8 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|385804824|ref|YP_005841224.1| - 0.013 15.5 1.0 0.025 14.5 0.7 1.6 1 0 0 1 1 1 0 NADH(P)-binding ApbA PF02558.11 gi|385804824|ref|YP_005841224.1| - 0.02 14.3 0.0 0.032 13.6 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ACT PF01842.20 gi|385804825|ref|YP_005841225.1| - 0.00034 20.0 0.1 0.0022 17.4 0.0 2.4 1 1 1 2 2 2 1 ACT domain GTP_EFTU PF00009.22 gi|385804826|ref|YP_005841226.1| - 1.4e-60 204.0 0.6 2.3e-60 203.2 0.4 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|385804826|ref|YP_005841226.1| - 6e-23 80.6 0.0 2.2e-22 78.8 0.0 2.0 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|385804826|ref|YP_005841226.1| - 2.9e-22 78.2 0.4 2.9e-22 78.2 0.3 1.9 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|385804826|ref|YP_005841226.1| - 3.6e-22 78.0 0.3 5.7e-21 74.1 0.0 2.9 3 0 0 3 3 3 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|385804826|ref|YP_005841226.1| - 7.1e-14 51.6 2.4 2.8e-13 49.7 0.8 2.9 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|385804826|ref|YP_005841226.1| - 2.5e-05 24.2 0.2 0.00014 21.8 0.0 2.4 2 0 0 2 2 2 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|385804826|ref|YP_005841226.1| - 0.099 11.8 0.1 0.29 10.3 0.1 1.8 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Rnk_N PF14760.1 gi|385804827|ref|YP_005841227.1| - 0.076 13.0 0.2 3.1 7.9 0.0 2.5 2 0 0 2 2 2 0 Rnk N-terminus DUF4157 PF13699.1 gi|385804827|ref|YP_005841227.1| - 0.31 11.2 5.4 0.14 12.3 0.6 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF4157) Ribosomal_S7 PF00177.16 gi|385804828|ref|YP_005841228.1| - 6.2e-35 119.9 1.1 7.7e-35 119.6 0.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosom_S12_S23 PF00164.20 gi|385804829|ref|YP_005841229.1| - 9.7e-41 138.0 0.1 1.1e-40 137.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.12 gi|385804830|ref|YP_005841230.1| - 2.1e-13 49.6 0.0 4.9e-08 32.4 0.0 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|385804830|ref|YP_005841230.1| - 1.7e-11 43.7 0.1 4.2e-11 42.4 0.0 1.7 2 0 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.24 gi|385804830|ref|YP_005841230.1| - 3.2e-06 26.6 0.2 0.00046 19.7 0.0 2.3 1 1 1 2 2 2 2 KH domain KH_4 PF13083.1 gi|385804830|ref|YP_005841230.1| - 0.00029 20.4 0.0 0.049 13.2 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|385804830|ref|YP_005841230.1| - 0.0044 16.6 0.1 0.23 11.1 0.0 2.9 2 2 1 3 3 3 1 KH domain RNA_pol_Rpb1_5 PF04998.12 gi|385804831|ref|YP_005841231.1| - 8.7e-42 143.2 1.0 7.8e-33 113.9 0.1 2.2 2 0 0 2 2 2 2 RNA polymerase Rpb1, domain 5 Spo0A_C PF08769.6 gi|385804831|ref|YP_005841231.1| - 0.041 13.7 0.1 0.18 11.7 0.0 2.0 2 0 0 2 2 2 0 Sporulation initiation factor Spo0A C terminal DUF4355 PF14265.1 gi|385804831|ref|YP_005841231.1| - 0.081 12.8 0.7 1.1 9.2 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4355) RNA_pol_Rpb1_1 PF04997.7 gi|385804832|ref|YP_005841232.1| - 2.4e-87 293.3 0.0 3.4e-87 292.8 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|385804832|ref|YP_005841232.1| - 3.4e-65 219.0 0.1 5.5e-65 218.3 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.12 gi|385804832|ref|YP_005841232.1| - 1.2e-32 111.8 0.0 2.5e-32 110.8 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|385804832|ref|YP_005841232.1| - 3.6e-29 101.9 0.0 6.2e-29 101.1 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_3 PF04983.13 gi|385804832|ref|YP_005841232.1| - 2.3e-27 95.6 0.0 4.1e-27 94.8 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 HTH_3 PF01381.17 gi|385804832|ref|YP_005841232.1| - 0.0093 15.7 0.0 0.023 14.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix Lar_restr_allev PF14354.1 gi|385804832|ref|YP_005841232.1| - 0.13 12.5 0.6 0.84 9.9 0.1 2.3 2 0 0 2 2 2 0 Restriction alleviation protein Lar RNA_pol_Rpb2_6 PF00562.23 gi|385804833|ref|YP_005841233.1| - 1.1e-122 409.5 0.0 2.1e-122 408.5 0.0 1.4 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_4 PF04566.8 gi|385804833|ref|YP_005841233.1| - 2.2e-26 91.4 1.6 1.4e-25 88.8 0.9 2.4 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_7 PF04560.15 gi|385804833|ref|YP_005841233.1| - 5.9e-26 90.5 0.1 2e-25 88.8 0.0 1.9 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_5 PF04567.12 gi|385804833|ref|YP_005841233.1| - 2.3e-12 46.6 3.5 6e-12 45.3 2.4 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb2_1 PF04563.10 gi|385804834|ref|YP_005841234.1| - 1.5e-53 180.7 0.0 1.9e-53 180.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|385804834|ref|YP_005841234.1| - 4e-27 94.8 0.1 6e-27 94.2 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|385804834|ref|YP_005841234.1| - 4.5e-23 80.7 0.0 8.7e-23 79.8 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb5_C PF01191.14 gi|385804835|ref|YP_005841235.1| - 9e-26 89.2 0.4 9.9e-26 89.1 0.3 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF3006 PF11213.3 gi|385804835|ref|YP_005841235.1| - 0.017 14.8 0.1 0.12 12.1 0.1 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3006) RIO1 PF01163.17 gi|385804836|ref|YP_005841236.1| - 4e-61 205.6 0.0 7.7e-61 204.7 0.0 1.4 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|385804836|ref|YP_005841236.1| - 8.6e-08 32.1 0.2 2.8e-05 23.9 0.0 2.6 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|385804836|ref|YP_005841236.1| - 5.2e-06 25.7 0.0 1.7e-05 24.1 0.0 1.7 1 1 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|385804836|ref|YP_005841236.1| - 1.1e-05 24.6 0.1 2.9e-05 23.2 0.1 1.6 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family WaaY PF06176.6 gi|385804836|ref|YP_005841236.1| - 0.022 13.9 0.0 0.033 13.3 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) ABC1 PF03109.11 gi|385804836|ref|YP_005841236.1| - 0.1 12.6 0.3 7.3 6.5 0.0 3.2 3 0 0 3 3 3 0 ABC1 family Apolipo_F PF15148.1 gi|385804836|ref|YP_005841236.1| - 0.13 11.5 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 Apolipoprotein F eIF-1a PF01176.14 gi|385804837|ref|YP_005841237.1| - 1.9e-28 97.6 0.4 2.6e-28 97.2 0.3 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 tRNA-synt_1b PF00579.20 gi|385804838|ref|YP_005841238.1| - 2.8e-43 148.1 0.0 3.4e-43 147.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|385804838|ref|YP_005841238.1| - 0.016 13.9 0.0 3.4 6.2 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) tRNA-synt_1c PF00749.16 gi|385804838|ref|YP_005841238.1| - 0.033 12.8 0.3 3.4 6.2 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (E and Q), catalytic domain PLDc_N PF13396.1 gi|385804839|ref|YP_005841239.1| - 1.9e-06 27.4 3.8 1.9e-06 27.4 2.7 2.0 2 1 0 2 2 2 1 Phospholipase_D-nuclease N-terminal 7TMR-DISM_7TM PF07695.6 gi|385804839|ref|YP_005841239.1| - 0.042 13.5 6.8 0.059 13.0 4.7 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling Herpes_LMP1 PF05297.6 gi|385804839|ref|YP_005841239.1| - 0.33 9.8 5.9 0.42 9.4 4.1 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) RseC_MucC PF04246.7 gi|385804839|ref|YP_005841239.1| - 9.1 5.8 6.6 3.1 7.3 0.1 2.1 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF460 PF04312.8 gi|385804840|ref|YP_005841240.1| - 2.5e-48 163.0 1.1 2.2e-47 160.0 0.1 2.8 3 0 0 3 3 3 1 Protein of unknown function (DUF460) GAS PF13851.1 gi|385804840|ref|YP_005841240.1| - 0.0033 16.6 17.8 0.0076 15.4 11.3 2.1 2 0 0 2 2 2 1 Growth-arrest specific micro-tubule binding APG6 PF04111.7 gi|385804840|ref|YP_005841240.1| - 0.0061 15.6 14.8 0.02 13.9 10.3 1.9 1 0 0 1 1 1 1 Autophagy protein Apg6 BLOC1_2 PF10046.4 gi|385804840|ref|YP_005841240.1| - 0.012 15.7 7.2 0.39 10.8 1.4 2.6 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_13 PF13166.1 gi|385804840|ref|YP_005841240.1| - 0.019 13.4 9.0 0.03 12.8 6.2 1.2 1 0 0 1 1 1 0 AAA domain Nsp1_C PF05064.8 gi|385804840|ref|YP_005841240.1| - 0.06 12.9 9.4 0.11 12.1 0.6 2.8 1 1 1 2 2 2 0 Nsp1-like C-terminal region Spc7 PF08317.6 gi|385804840|ref|YP_005841240.1| - 0.06 11.9 16.0 0.089 11.4 10.0 1.9 1 1 1 2 2 2 0 Spc7 kinetochore protein Reo_sigmaC PF04582.7 gi|385804840|ref|YP_005841240.1| - 0.084 12.0 0.5 0.19 10.9 0.3 1.5 1 1 0 1 1 1 0 Reovirus sigma C capsid protein V_ATPase_I PF01496.14 gi|385804840|ref|YP_005841240.1| - 0.13 10.0 9.7 0.26 9.0 6.7 1.4 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family SlyX PF04102.7 gi|385804840|ref|YP_005841240.1| - 0.2 12.0 7.5 1.4 9.3 0.8 3.1 1 1 2 3 3 3 0 SlyX Laminin_II PF06009.7 gi|385804840|ref|YP_005841240.1| - 0.29 10.8 8.6 1.1 8.9 5.9 2.1 1 1 0 1 1 1 0 Laminin Domain II TMF_DNA_bd PF12329.3 gi|385804840|ref|YP_005841240.1| - 0.47 10.3 24.6 0.22 11.3 9.4 3.0 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding CENP-F_leu_zip PF10473.4 gi|385804840|ref|YP_005841240.1| - 0.52 10.1 29.3 0.029 14.2 14.8 2.6 2 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DivIC PF04977.10 gi|385804840|ref|YP_005841240.1| - 0.55 9.7 14.5 1.2 8.6 0.8 3.2 1 1 0 2 2 2 0 Septum formation initiator DUF342 PF03961.8 gi|385804840|ref|YP_005841240.1| - 0.93 7.8 7.9 1.8 6.8 5.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF342) PspB PF06667.7 gi|385804840|ref|YP_005841240.1| - 0.94 9.4 16.3 0.83 9.6 2.3 2.7 2 0 0 2 2 2 0 Phage shock protein B Prefoldin PF02996.12 gi|385804840|ref|YP_005841240.1| - 1.7 8.2 8.6 0.67 9.6 0.8 2.9 3 0 0 3 3 3 0 Prefoldin subunit FlaC_arch PF05377.6 gi|385804840|ref|YP_005841240.1| - 1.8 8.4 9.0 1.7 8.5 0.7 2.7 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) LMBR1 PF04791.11 gi|385804840|ref|YP_005841240.1| - 2.5 6.5 2.4 3.5 6.1 1.7 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF641 PF04859.7 gi|385804840|ref|YP_005841240.1| - 2.6 7.8 17.9 0.031 14.0 2.5 3.1 2 1 1 3 3 3 0 Plant protein of unknown function (DUF641) DUF812 PF05667.6 gi|385804840|ref|YP_005841240.1| - 2.7 6.3 23.4 1.2 7.5 12.7 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF812) TBPIP PF07106.8 gi|385804840|ref|YP_005841240.1| - 5.1 6.6 15.1 11 5.4 1.4 2.4 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Bacillus_HBL PF05791.6 gi|385804840|ref|YP_005841240.1| - 5.2 6.3 7.9 5.6 6.2 1.0 2.3 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Spc24 PF08286.6 gi|385804840|ref|YP_005841240.1| - 6.8 6.4 14.6 7 6.3 4.5 2.8 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 IncA PF04156.9 gi|385804840|ref|YP_005841240.1| - 7.5 6.0 24.7 0.088 12.3 11.1 2.2 2 0 0 2 2 2 0 IncA protein DUF3450 PF11932.3 gi|385804840|ref|YP_005841240.1| - 9.3 5.4 16.7 0.83 8.8 3.1 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF3450) Lactamase_B_2 PF12706.2 gi|385804841|ref|YP_005841241.1| - 5.4e-31 107.6 0.1 7.8e-31 107.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|385804841|ref|YP_005841241.1| - 2.1e-17 63.4 1.0 7.5e-17 61.6 0.6 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|385804841|ref|YP_005841241.1| - 0.0021 17.5 0.0 0.0039 16.6 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease DUF218 PF02698.12 gi|385804841|ref|YP_005841241.1| - 0.08 12.4 0.4 0.14 11.6 0.3 1.2 1 0 0 1 1 1 0 DUF218 domain AAA PF00004.24 gi|385804843|ref|YP_005841243.1| - 1.1e-10 41.7 0.0 5.6e-10 39.5 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|385804843|ref|YP_005841243.1| - 1.9e-10 40.6 0.0 3.6e-10 39.7 0.0 1.5 1 1 0 1 1 1 1 DNA polymerase III, delta subunit AAA_16 PF13191.1 gi|385804843|ref|YP_005841243.1| - 3.6e-08 33.6 0.4 6.4e-06 26.2 0.0 3.0 1 1 1 2 2 2 1 AAA ATPase domain Rep_fac_C PF08542.6 gi|385804843|ref|YP_005841243.1| - 4.7e-08 32.9 0.0 1.7e-07 31.0 0.0 2.0 2 0 0 2 2 2 1 Replication factor C C-terminal domain AAA_22 PF13401.1 gi|385804843|ref|YP_005841243.1| - 1.5e-06 28.3 0.0 8.1e-06 26.0 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|385804843|ref|YP_005841243.1| - 2e-06 27.7 0.0 0.0001 22.2 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|385804843|ref|YP_005841243.1| - 6.5e-05 22.6 0.0 0.00012 21.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|385804843|ref|YP_005841243.1| - 0.00031 20.2 0.0 0.0021 17.5 0.0 2.0 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_11 PF13086.1 gi|385804843|ref|YP_005841243.1| - 0.0016 18.1 0.1 0.0037 16.8 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|385804843|ref|YP_005841243.1| - 0.0048 16.6 0.0 0.012 15.3 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|385804843|ref|YP_005841243.1| - 0.0054 16.3 0.5 0.075 12.6 0.0 2.5 2 1 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.1 gi|385804843|ref|YP_005841243.1| - 0.0064 16.5 0.0 0.54 10.2 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|385804843|ref|YP_005841243.1| - 0.0095 15.0 0.3 2.3 7.1 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus DUF2075 PF09848.4 gi|385804843|ref|YP_005841243.1| - 0.011 14.6 0.0 0.015 14.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) IstB_IS21 PF01695.12 gi|385804843|ref|YP_005841243.1| - 0.015 14.7 0.0 0.035 13.5 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein DNA_pol3_delta PF06144.8 gi|385804843|ref|YP_005841243.1| - 0.028 13.9 0.0 0.067 12.6 0.0 1.6 1 0 0 1 1 1 0 DNA polymerase III, delta subunit NACHT PF05729.7 gi|385804843|ref|YP_005841243.1| - 0.028 14.0 0.0 0.11 12.1 0.0 2.0 2 1 0 2 2 1 0 NACHT domain Rad17 PF03215.10 gi|385804843|ref|YP_005841243.1| - 0.029 13.0 0.0 3.4 6.2 0.0 2.2 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein AAA_5 PF07728.9 gi|385804843|ref|YP_005841243.1| - 0.042 13.5 0.0 0.21 11.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|385804843|ref|YP_005841243.1| - 0.05 12.3 0.0 4.9 5.7 0.0 2.1 2 0 0 2 2 2 0 TIP49 C-terminus AAA_18 PF13238.1 gi|385804843|ref|YP_005841243.1| - 0.058 13.7 0.0 0.16 12.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|385804843|ref|YP_005841243.1| - 0.069 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase NTPase_1 PF03266.10 gi|385804843|ref|YP_005841243.1| - 0.075 12.7 0.0 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 NTPase ABC_tran PF00005.22 gi|385804843|ref|YP_005841243.1| - 0.085 13.1 0.0 0.17 12.2 0.0 1.9 1 1 0 1 1 1 0 ABC transporter AAA_3 PF07726.6 gi|385804843|ref|YP_005841243.1| - 0.1 12.2 0.0 1.7 8.2 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PS_Dcarbxylase PF02666.10 gi|385804844|ref|YP_005841244.1| - 4.9e-27 94.5 0.0 2.7e-24 85.5 0.0 2.1 1 1 0 1 1 1 1 Phosphatidylserine decarboxylase UPF0020 PF01170.13 gi|385804845|ref|YP_005841245.1| - 1e-25 90.3 0.0 1.5e-25 89.8 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|385804845|ref|YP_005841245.1| - 2.3e-11 43.7 0.0 6.6e-11 42.2 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|385804845|ref|YP_005841245.1| - 0.0013 18.1 0.0 0.0048 16.2 0.0 1.8 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.1 gi|385804845|ref|YP_005841245.1| - 0.0043 17.3 0.0 0.012 15.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|385804845|ref|YP_005841245.1| - 0.01 16.2 0.0 0.023 15.1 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385804845|ref|YP_005841245.1| - 0.015 15.8 0.1 0.038 14.5 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain THUMP PF02926.12 gi|385804845|ref|YP_005841245.1| - 0.023 14.5 0.0 0.044 13.6 0.0 1.4 1 0 0 1 1 1 0 THUMP domain AviRa PF11599.3 gi|385804845|ref|YP_005841245.1| - 0.036 13.1 0.1 2.1 7.3 0.0 2.2 1 1 1 2 2 2 0 RRNA methyltransferase AviRa TFIIB PF00382.14 gi|385804846|ref|YP_005841246.1| - 1.5e-31 107.9 4.4 2.1e-15 56.2 0.0 2.6 3 0 0 3 3 3 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|385804846|ref|YP_005841246.1| - 8.4e-12 44.2 1.9 1.9e-11 43.1 1.3 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|385804846|ref|YP_005841246.1| - 0.00018 20.7 0.2 0.034 13.4 0.0 2.8 2 0 0 2 2 2 1 Sigma-70, region 4 DZR PF12773.2 gi|385804846|ref|YP_005841246.1| - 0.056 13.2 0.3 0.13 12.0 0.2 1.6 1 0 0 1 1 1 0 Double zinc ribbon Rubredoxin PF00301.15 gi|385804846|ref|YP_005841246.1| - 0.14 12.0 0.2 15 5.5 0.0 2.4 2 0 0 2 2 2 0 Rubredoxin Zn-ribbon_8 PF09723.5 gi|385804846|ref|YP_005841246.1| - 0.45 10.5 3.7 0.89 9.5 0.1 2.5 1 1 1 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|385804846|ref|YP_005841246.1| - 0.49 9.6 3.9 2.8 7.2 2.7 2.0 1 1 1 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|385804847|ref|YP_005841247.1| - 0.041 13.6 2.5 0.067 13.0 1.7 1.3 1 0 0 1 1 1 0 Double zinc ribbon FYVE PF01363.16 gi|385804847|ref|YP_005841247.1| - 0.05 13.4 1.3 0.068 13.0 0.9 1.3 1 1 0 1 1 1 0 FYVE zinc finger HypA PF01155.14 gi|385804847|ref|YP_005841247.1| - 0.1 12.3 2.7 0.16 11.7 1.8 1.5 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|385804847|ref|YP_005841247.1| - 0.41 10.6 4.2 0.93 9.5 2.9 1.6 1 1 0 1 1 1 0 Zinc ribbon domain TBP PF00352.16 gi|385804848|ref|YP_005841248.1| - 6.6e-64 211.2 0.0 1e-30 104.9 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|385804848|ref|YP_005841248.1| - 0.0059 16.6 0.0 0.49 10.4 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF3378) CENP-F_C_Rb_bdg PF10490.4 gi|385804848|ref|YP_005841248.1| - 0.039 13.2 0.6 8.8 5.7 0.0 2.2 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 DUF3773 PF12608.3 gi|385804848|ref|YP_005841248.1| - 0.12 12.4 0.0 0.85 9.7 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3773) TcpE PF12648.2 gi|385804849|ref|YP_005841249.1| - 0.83 9.8 8.1 5.7 7.1 0.4 2.1 2 0 0 2 2 2 0 TcpE family FixQ PF05545.6 gi|385804849|ref|YP_005841249.1| - 2.3 7.9 7.8 1.1 8.9 0.1 2.6 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ Chitin_synth_2 PF03142.10 gi|385804849|ref|YP_005841249.1| - 2.9 6.1 6.6 3.1 6.0 4.5 1.0 1 0 0 1 1 1 0 Chitin synthase DAD PF02109.11 gi|385804849|ref|YP_005841249.1| - 3.1 7.8 6.2 13 5.9 3.7 2.3 1 1 1 2 2 2 0 DAD family DUF3753 PF12575.3 gi|385804849|ref|YP_005841249.1| - 9.8 6.0 7.6 15 5.4 4.7 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3753) HisG PF01634.13 gi|385804850|ref|YP_005841250.1| - 9.2e-48 161.8 0.1 1.4e-47 161.2 0.1 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|385804850|ref|YP_005841250.1| - 1.1e-27 95.7 0.1 2e-27 94.9 0.1 1.5 1 0 0 1 1 1 1 HisG, C-terminal domain Amidohydro_1 PF01979.15 gi|385804851|ref|YP_005841251.1| - 2.6e-47 162.0 5.6 3.2e-47 161.7 3.9 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|385804851|ref|YP_005841251.1| - 6.6e-16 59.1 16.3 1.1e-15 58.4 11.3 1.4 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|385804851|ref|YP_005841251.1| - 5.2e-12 45.6 15.1 1.1e-10 41.3 6.1 2.2 1 1 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|385804851|ref|YP_005841251.1| - 1.2e-10 40.9 0.4 6.5e-10 38.6 0.2 2.3 1 1 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|385804851|ref|YP_005841251.1| - 0.00032 19.7 0.1 0.00063 18.7 0.0 1.5 1 0 0 1 1 1 1 Adenosine/AMP deaminase SHS2_FTSA PF02491.15 gi|385804851|ref|YP_005841251.1| - 0.049 13.5 1.6 0.27 11.1 0.2 2.6 2 1 0 2 2 2 0 SHS2 domain inserted in FTSA AdoHcyase PF05221.12 gi|385804852|ref|YP_005841252.1| - 2e-49 167.9 0.2 2.4e-49 167.6 0.1 1.1 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|385804852|ref|YP_005841252.1| - 6.4e-49 165.9 0.8 1.1e-48 165.1 0.4 1.5 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|385804852|ref|YP_005841252.1| - 6.6e-10 38.4 0.2 1.3e-09 37.5 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|385804852|ref|YP_005841252.1| - 1.7e-06 27.5 0.6 5.3e-06 25.8 0.1 2.0 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|385804852|ref|YP_005841252.1| - 0.0061 16.5 0.1 0.017 15.1 0.1 1.8 1 0 0 1 1 1 1 TrkA-N domain DUF3921 PF13060.1 gi|385804852|ref|YP_005841252.1| - 0.03 14.2 0.1 0.071 13.0 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3921) 3HCDH_N PF02737.13 gi|385804852|ref|YP_005841252.1| - 0.041 13.5 0.2 0.089 12.4 0.2 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sulfatase PF00884.18 gi|385804853|ref|YP_005841253.1| - 1.3e-35 123.0 0.1 2e-35 122.4 0.1 1.3 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|385804853|ref|YP_005841253.1| - 1e-07 31.6 0.1 0.0018 17.6 0.0 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase HAT PF02184.11 gi|385804853|ref|YP_005841253.1| - 0.082 12.6 0.1 0.28 10.9 0.0 1.9 2 0 0 2 2 2 0 HAT (Half-A-TPR) repeat MgtE PF01769.11 gi|385804854|ref|YP_005841254.1| - 5.2e-19 68.8 11.9 5.2e-19 68.8 8.3 1.4 2 0 0 2 2 2 1 Divalent cation transporter MgtE PF01769.11 gi|385804855|ref|YP_005841255.1| - 3.9e-17 62.7 10.8 3.9e-17 62.7 7.5 1.4 2 0 0 2 2 2 1 Divalent cation transporter TMEM141 PF15110.1 gi|385804855|ref|YP_005841255.1| - 0.17 12.1 0.8 0.37 11.1 0.5 1.6 1 1 0 1 1 1 0 TMEM141 protein family DUF3816 PF12822.2 gi|385804855|ref|YP_005841255.1| - 0.55 10.0 14.9 1 9.2 10.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3816) SRP54 PF00448.17 gi|385804856|ref|YP_005841256.1| - 3e-62 209.5 0.1 5.8e-62 208.6 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|385804856|ref|YP_005841256.1| - 7.9e-30 103.1 3.6 7.9e-30 103.1 2.5 2.9 2 1 1 3 3 3 1 Signal peptide binding domain SRP54_N PF02881.14 gi|385804856|ref|YP_005841256.1| - 4.5e-16 58.7 0.6 1.2e-15 57.3 0.2 2.0 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.7 gi|385804856|ref|YP_005841256.1| - 0.0039 16.3 0.0 0.0089 15.1 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin CbiA PF01656.18 gi|385804856|ref|YP_005841256.1| - 0.0051 16.2 0.3 0.039 13.3 0.2 2.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_10 PF12846.2 gi|385804856|ref|YP_005841256.1| - 0.0065 15.9 0.2 0.0083 15.5 0.1 1.4 1 1 0 1 1 1 1 AAA-like domain MobB PF03205.9 gi|385804856|ref|YP_005841256.1| - 0.0099 15.5 0.0 0.024 14.3 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|385804856|ref|YP_005841256.1| - 0.011 15.1 0.1 0.041 13.3 0.1 1.9 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain APS_kinase PF01583.15 gi|385804856|ref|YP_005841256.1| - 0.013 15.1 0.1 0.039 13.6 0.0 1.9 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_25 PF13481.1 gi|385804856|ref|YP_005841256.1| - 0.018 14.4 0.1 0.018 14.4 0.1 2.5 3 1 0 3 3 3 0 AAA domain ArsA_ATPase PF02374.10 gi|385804856|ref|YP_005841256.1| - 0.021 13.8 3.0 0.099 11.6 0.1 2.4 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_33 PF13671.1 gi|385804856|ref|YP_005841256.1| - 0.041 13.7 0.0 0.097 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|385804856|ref|YP_005841256.1| - 0.041 14.0 0.2 0.2 11.7 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|385804856|ref|YP_005841256.1| - 0.06 13.1 0.0 2.6 7.8 0.0 2.7 2 0 0 2 2 2 0 Part of AAA domain DUF4618 PF15397.1 gi|385804856|ref|YP_005841256.1| - 0.068 12.4 1.9 0.41 9.9 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) SRPRB PF09439.5 gi|385804856|ref|YP_005841256.1| - 0.082 12.1 0.1 5.1 6.2 0.0 2.4 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Thymidylate_kin PF02223.12 gi|385804856|ref|YP_005841256.1| - 0.13 11.5 0.1 0.47 9.8 0.0 1.9 2 0 0 2 2 2 0 Thymidylate kinase KTI12 PF08433.5 gi|385804856|ref|YP_005841256.1| - 0.14 11.3 0.0 0.27 10.3 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 SMC_N PF02463.14 gi|385804856|ref|YP_005841256.1| - 0.14 11.3 0.0 0.25 10.5 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain SRP54 PF00448.17 gi|385804857|ref|YP_005841257.1| - 2.5e-68 229.3 0.5 3.7e-68 228.8 0.3 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|385804857|ref|YP_005841257.1| - 2.7e-12 46.6 0.2 2.7e-12 46.6 0.1 1.8 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain cobW PF02492.14 gi|385804857|ref|YP_005841257.1| - 2.9e-05 23.5 0.4 7.5e-05 22.2 0.3 1.6 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.18 gi|385804857|ref|YP_005841257.1| - 3.2e-05 23.4 4.1 3.7e-05 23.2 1.1 2.2 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain APS_kinase PF01583.15 gi|385804857|ref|YP_005841257.1| - 4.8e-05 23.0 0.0 8.4e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_16 PF13191.1 gi|385804857|ref|YP_005841257.1| - 6.8e-05 22.9 0.8 0.00018 21.5 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain Thymidylate_kin PF02223.12 gi|385804857|ref|YP_005841257.1| - 0.0001 21.7 0.1 0.005 16.2 0.0 2.4 2 0 0 2 2 2 1 Thymidylate kinase Zeta_toxin PF06414.7 gi|385804857|ref|YP_005841257.1| - 0.00014 21.0 0.1 0.00032 19.8 0.1 1.6 1 0 0 1 1 1 1 Zeta toxin MobB PF03205.9 gi|385804857|ref|YP_005841257.1| - 0.00015 21.4 0.2 0.00055 19.6 0.1 2.0 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|385804857|ref|YP_005841257.1| - 0.00054 20.1 0.0 0.0016 18.6 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|385804857|ref|YP_005841257.1| - 0.00058 19.4 1.4 0.00058 19.4 0.9 2.0 2 1 0 2 2 2 1 AAA domain KTI12 PF08433.5 gi|385804857|ref|YP_005841257.1| - 0.0015 17.8 0.9 0.0026 17.0 0.0 1.8 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_28 PF13521.1 gi|385804857|ref|YP_005841257.1| - 0.0018 18.2 0.8 0.0089 16.0 0.2 2.4 2 1 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|385804857|ref|YP_005841257.1| - 0.0019 17.9 0.1 0.0043 16.7 0.1 1.6 1 0 0 1 1 1 1 NTPase ArgK PF03308.11 gi|385804857|ref|YP_005841257.1| - 0.0085 14.8 0.7 0.018 13.8 0.5 1.7 1 1 0 1 1 1 1 ArgK protein ATP_bind_1 PF03029.12 gi|385804857|ref|YP_005841257.1| - 0.012 15.1 0.0 0.024 14.1 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein VirC1 PF07015.6 gi|385804857|ref|YP_005841257.1| - 0.012 14.6 0.1 0.021 13.9 0.1 1.4 1 0 0 1 1 1 0 VirC1 protein AAA PF00004.24 gi|385804857|ref|YP_005841257.1| - 0.015 15.4 0.3 0.11 12.6 0.1 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|385804857|ref|YP_005841257.1| - 0.018 14.8 0.0 0.04 13.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|385804857|ref|YP_005841257.1| - 0.018 14.7 0.1 0.051 13.3 0.1 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_17 PF13207.1 gi|385804857|ref|YP_005841257.1| - 0.03 15.1 0.1 0.088 13.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain 6PF2K PF01591.13 gi|385804857|ref|YP_005841257.1| - 0.033 13.2 0.0 0.056 12.5 0.0 1.3 1 0 0 1 1 1 0 6-phosphofructo-2-kinase AAA_14 PF13173.1 gi|385804857|ref|YP_005841257.1| - 0.039 13.8 0.0 0.12 12.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|385804857|ref|YP_005841257.1| - 0.12 12.0 0.1 0.25 10.9 0.1 1.5 1 0 0 1 1 1 0 NACHT domain Viral_helicase1 PF01443.13 gi|385804857|ref|YP_005841257.1| - 0.12 11.8 0.5 0.25 10.8 0.0 1.8 2 1 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Podoplanin PF05808.6 gi|385804857|ref|YP_005841257.1| - 2.5 7.6 10.1 5.4 6.5 7.0 1.6 1 0 0 1 1 1 0 Podoplanin DUF966 PF06136.8 gi|385804857|ref|YP_005841257.1| - 6.7 6.0 9.8 10 5.4 6.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF966) Prefoldin PF02996.12 gi|385804858|ref|YP_005841258.1| - 1.2e-24 86.2 7.2 1.2e-24 86.2 5.0 2.2 1 1 2 3 3 3 1 Prefoldin subunit TBPIP PF07106.8 gi|385804858|ref|YP_005841258.1| - 2.2e-05 24.0 16.2 0.0033 16.9 0.4 2.1 2 0 0 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) IncA PF04156.9 gi|385804858|ref|YP_005841258.1| - 2.3e-05 24.0 24.6 0.0028 17.2 4.6 2.1 2 0 0 2 2 2 2 IncA protein DUF641 PF04859.7 gi|385804858|ref|YP_005841258.1| - 4.2e-05 23.3 13.2 0.0042 16.8 3.2 2.2 2 0 0 2 2 2 2 Plant protein of unknown function (DUF641) TSC22 PF01166.13 gi|385804858|ref|YP_005841258.1| - 0.00012 21.9 18.6 0.00073 19.4 4.5 2.8 2 1 1 3 3 2 1 TSC-22/dip/bun family Fib_alpha PF08702.5 gi|385804858|ref|YP_005841258.1| - 0.00013 22.1 14.2 0.087 12.9 5.9 2.3 2 0 0 2 2 2 2 Fibrinogen alpha/beta chain family CENP-F_leu_zip PF10473.4 gi|385804858|ref|YP_005841258.1| - 0.00023 21.0 16.5 0.042 13.6 4.8 2.3 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Prefoldin_2 PF01920.15 gi|385804858|ref|YP_005841258.1| - 0.00024 20.8 27.1 0.099 12.4 3.4 3.1 1 1 1 2 2 2 2 Prefoldin subunit DivIC PF04977.10 gi|385804858|ref|YP_005841258.1| - 0.00031 20.1 3.0 0.00031 20.1 2.1 3.3 2 1 1 3 3 2 1 Septum formation initiator TMF_DNA_bd PF12329.3 gi|385804858|ref|YP_005841258.1| - 0.00032 20.4 23.9 0.0053 16.5 6.3 2.7 2 1 0 2 2 2 1 TATA element modulatory factor 1 DNA binding GAS PF13851.1 gi|385804858|ref|YP_005841258.1| - 0.00037 19.7 13.3 0.052 12.7 3.4 2.1 2 0 0 2 2 2 2 Growth-arrest specific micro-tubule binding BLOC1_2 PF10046.4 gi|385804858|ref|YP_005841258.1| - 0.00046 20.2 16.9 0.021 14.9 1.7 2.6 2 1 1 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4618 PF15397.1 gi|385804858|ref|YP_005841258.1| - 0.00056 19.3 13.1 0.009 15.3 3.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4618) DUF972 PF06156.8 gi|385804858|ref|YP_005841258.1| - 0.00058 20.1 15.8 0.023 15.0 0.3 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF972) DUF812 PF05667.6 gi|385804858|ref|YP_005841258.1| - 0.00074 18.1 17.9 0.025 13.0 1.4 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF812) Golgin_A5 PF09787.4 gi|385804858|ref|YP_005841258.1| - 0.00076 18.1 3.0 0.00076 18.1 2.1 2.0 1 1 1 2 2 2 1 Golgin subfamily A member 5 MAD PF05557.8 gi|385804858|ref|YP_005841258.1| - 0.00081 17.6 13.6 0.0013 16.9 9.5 1.3 1 1 0 1 1 1 1 Mitotic checkpoint protein ORF6C PF10552.4 gi|385804858|ref|YP_005841258.1| - 0.00088 18.9 12.0 0.024 14.3 0.3 2.2 2 0 0 2 2 2 1 ORF6C domain AAA_13 PF13166.1 gi|385804858|ref|YP_005841258.1| - 0.0011 17.5 15.3 0.0057 15.1 8.4 1.9 1 1 1 2 2 2 2 AAA domain bZIP_1 PF00170.16 gi|385804858|ref|YP_005841258.1| - 0.0011 18.8 12.4 0.12 12.3 1.2 2.7 2 1 0 2 2 2 2 bZIP transcription factor Filament PF00038.16 gi|385804858|ref|YP_005841258.1| - 0.0013 18.3 14.8 0.07 12.5 4.0 2.1 2 0 0 2 2 2 2 Intermediate filament protein LPP PF04728.8 gi|385804858|ref|YP_005841258.1| - 0.0018 18.0 11.9 0.072 12.8 1.3 2.8 2 1 0 2 2 2 2 Lipoprotein leucine-zipper DUF342 PF03961.8 gi|385804858|ref|YP_005841258.1| - 0.002 16.6 11.0 0.036 12.5 2.4 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF342) APG6 PF04111.7 gi|385804858|ref|YP_005841258.1| - 0.002 17.2 21.1 0.046 12.7 6.4 2.0 2 0 0 2 2 2 2 Autophagy protein Apg6 PspA_IM30 PF04012.7 gi|385804858|ref|YP_005841258.1| - 0.0021 17.4 20.7 0.015 14.6 7.7 2.1 2 0 0 2 2 2 1 PspA/IM30 family NPV_P10 PF05531.7 gi|385804858|ref|YP_005841258.1| - 0.0022 18.1 21.3 0.13 12.5 3.4 2.7 2 2 0 2 2 2 2 Nucleopolyhedrovirus P10 protein Spc24 PF08286.6 gi|385804858|ref|YP_005841258.1| - 0.0024 17.5 20.0 0.049 13.3 0.7 2.2 2 0 0 2 2 2 2 Spc24 subunit of Ndc80 FlxA PF14282.1 gi|385804858|ref|YP_005841258.1| - 0.003 17.4 38.5 0.027 14.4 16.7 2.3 2 0 0 2 2 2 1 FlxA-like protein FliD_C PF07195.7 gi|385804858|ref|YP_005841258.1| - 0.0032 16.8 13.0 0.0085 15.4 4.1 2.1 2 0 0 2 2 2 1 Flagellar hook-associated protein 2 C-terminus ketoacyl-synt PF00109.21 gi|385804858|ref|YP_005841258.1| - 0.0045 16.4 0.2 0.015 14.8 0.0 1.7 2 0 0 2 2 1 1 Beta-ketoacyl synthase, N-terminal domain ADIP PF11559.3 gi|385804858|ref|YP_005841258.1| - 0.0049 16.7 9.2 0.0049 16.7 6.4 2.1 2 0 0 2 2 2 1 Afadin- and alpha -actinin-Binding DUF4515 PF14988.1 gi|385804858|ref|YP_005841258.1| - 0.0058 16.3 20.2 0.016 14.9 13.5 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4515) Lzipper-MIP1 PF14389.1 gi|385804858|ref|YP_005841258.1| - 0.0061 16.6 13.9 0.013 15.5 3.1 2.3 2 0 0 2 2 2 1 Leucine-zipper of ternary complex factor MIP1 EzrA PF06160.7 gi|385804858|ref|YP_005841258.1| - 0.0069 14.6 16.7 0.013 13.6 0.8 2.1 2 0 0 2 2 2 1 Septation ring formation regulator, EzrA Spectrin PF00435.16 gi|385804858|ref|YP_005841258.1| - 0.007 16.6 18.2 0.18 12.0 2.0 2.3 2 0 0 2 2 2 2 Spectrin repeat DUF904 PF06005.7 gi|385804858|ref|YP_005841258.1| - 0.0073 16.5 24.9 0.2 11.9 7.6 2.6 2 1 0 2 2 2 1 Protein of unknown function (DUF904) DUF4201 PF13870.1 gi|385804858|ref|YP_005841258.1| - 0.0074 15.7 11.8 0.14 11.6 0.2 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4201) Allexi_40kDa PF05549.6 gi|385804858|ref|YP_005841258.1| - 0.0076 15.5 5.5 0.51 9.5 1.3 2.1 2 0 0 2 2 2 1 Allexivirus 40kDa protein Spc7 PF08317.6 gi|385804858|ref|YP_005841258.1| - 0.0077 14.9 16.3 0.063 11.9 1.4 2.1 2 0 0 2 2 2 2 Spc7 kinetochore protein TPR_MLP1_2 PF07926.7 gi|385804858|ref|YP_005841258.1| - 0.0091 15.7 22.6 0.033 13.9 3.9 2.2 1 1 1 2 2 2 1 TPR/MLP1/MLP2-like protein TMF_TATA_bd PF12325.3 gi|385804858|ref|YP_005841258.1| - 0.0092 15.7 18.6 0.1 12.3 2.6 2.2 2 0 0 2 2 2 2 TATA element modulatory factor 1 TATA binding AKNA PF12443.3 gi|385804858|ref|YP_005841258.1| - 0.0092 15.9 17.1 0.083 12.9 0.7 2.2 2 0 0 2 2 2 1 AT-hook-containing transcription factor Cep57_MT_bd PF06657.8 gi|385804858|ref|YP_005841258.1| - 0.0097 15.8 20.1 0.18 11.7 6.9 2.3 2 0 0 2 2 2 2 Centrosome microtubule-binding domain of Cep57 Laminin_II PF06009.7 gi|385804858|ref|YP_005841258.1| - 0.01 15.5 12.3 0.12 12.0 0.9 2.2 2 0 0 2 2 2 0 Laminin Domain II DUF3450 PF11932.3 gi|385804858|ref|YP_005841258.1| - 0.011 15.0 26.6 0.085 12.1 9.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Synaptobrevin PF00957.16 gi|385804858|ref|YP_005841258.1| - 0.013 15.0 4.1 0.013 15.0 2.8 2.3 2 0 0 2 2 2 0 Synaptobrevin DUF4200 PF13863.1 gi|385804858|ref|YP_005841258.1| - 0.014 15.3 4.9 0.014 15.3 3.4 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4200) Seryl_tRNA_N PF02403.17 gi|385804858|ref|YP_005841258.1| - 0.015 15.2 14.1 0.36 10.8 1.7 2.5 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain CorA PF01544.13 gi|385804858|ref|YP_005841258.1| - 0.015 14.3 16.2 0.037 13.0 0.4 2.1 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein Hemerythrin PF01814.18 gi|385804858|ref|YP_005841258.1| - 0.015 15.4 2.5 1.4 9.0 0.1 2.2 2 0 0 2 2 2 0 Hemerythrin HHE cation binding domain Nnf1 PF03980.9 gi|385804858|ref|YP_005841258.1| - 0.016 15.2 12.1 0.27 11.2 0.6 2.4 2 0 0 2 2 2 0 Nnf1 Uds1 PF15456.1 gi|385804858|ref|YP_005841258.1| - 0.024 14.6 14.7 0.48 10.4 0.8 2.4 2 1 0 2 2 2 0 Up-regulated During Septation ATP-synt_D PF01813.12 gi|385804858|ref|YP_005841258.1| - 0.026 14.1 8.2 0.12 11.9 2.0 2.1 2 0 0 2 2 2 0 ATP synthase subunit D DUF603 PF04645.7 gi|385804858|ref|YP_005841258.1| - 0.026 14.4 2.4 2.7 7.9 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function, DUF603 COG2 PF06148.6 gi|385804858|ref|YP_005841258.1| - 0.026 14.3 9.8 0.26 11.1 0.4 2.2 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Reo_sigmaC PF04582.7 gi|385804858|ref|YP_005841258.1| - 0.027 13.6 9.5 0.1 11.7 0.4 2.0 1 1 1 2 2 2 0 Reovirus sigma C capsid protein HalX PF08663.5 gi|385804858|ref|YP_005841258.1| - 0.032 14.2 16.5 0.22 11.4 2.8 2.9 2 1 0 2 2 2 0 HalX domain Cluap1 PF10234.4 gi|385804858|ref|YP_005841258.1| - 0.04 13.1 14.8 0.038 13.2 3.4 2.1 2 0 0 2 2 2 0 Clusterin-associated protein-1 DUF4446 PF14584.1 gi|385804858|ref|YP_005841258.1| - 0.043 13.6 10.9 0.69 9.7 2.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) DUF4337 PF14235.1 gi|385804858|ref|YP_005841258.1| - 0.044 13.6 17.1 0.11 12.3 6.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) Tropomyosin_1 PF12718.2 gi|385804858|ref|YP_005841258.1| - 0.052 13.3 25.0 0.61 9.9 3.0 2.3 2 0 0 2 2 2 0 Tropomyosin like Mnd1 PF03962.10 gi|385804858|ref|YP_005841258.1| - 0.053 13.1 20.8 0.096 12.3 1.2 2.1 2 0 0 2 2 2 0 Mnd1 family DUF1664 PF07889.7 gi|385804858|ref|YP_005841258.1| - 0.062 13.1 16.1 0.54 10.0 2.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Effector_1 PF04518.7 gi|385804858|ref|YP_005841258.1| - 0.062 12.2 11.9 1.3 7.9 0.2 2.1 2 0 0 2 2 2 0 Effector from type III secretion system YlqD PF11068.3 gi|385804858|ref|YP_005841258.1| - 0.063 13.3 26.5 0.17 11.9 8.8 2.6 2 1 0 2 2 2 0 YlqD protein Ax_dynein_light PF10211.4 gi|385804858|ref|YP_005841258.1| - 0.074 12.8 20.8 0.49 10.2 7.4 2.1 2 0 0 2 2 2 0 Axonemal dynein light chain Phage_GP20 PF06810.6 gi|385804858|ref|YP_005841258.1| - 0.074 12.4 20.7 0.53 9.7 2.5 2.3 2 0 0 2 2 2 0 Phage minor structural protein GP20 DUF2730 PF10805.3 gi|385804858|ref|YP_005841258.1| - 0.076 12.7 8.8 1.1 9.0 0.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) CK2S PF15011.1 gi|385804858|ref|YP_005841258.1| - 0.086 12.6 10.1 0.92 9.2 0.3 2.1 2 0 0 2 2 2 0 Casein Kinase 2 substrate IFT57 PF10498.4 gi|385804858|ref|YP_005841258.1| - 0.098 11.3 16.5 0.36 9.5 5.1 2.1 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 DegS PF05384.6 gi|385804858|ref|YP_005841258.1| - 0.1 11.7 9.6 0.5 9.5 0.5 2.2 2 0 0 2 2 2 0 Sensor protein DegS Vps51 PF08700.6 gi|385804858|ref|YP_005841258.1| - 0.11 12.3 14.4 1.4 8.8 0.9 3.2 2 1 1 3 3 3 0 Vps51/Vps67 Syntaxin-6_N PF09177.6 gi|385804858|ref|YP_005841258.1| - 0.11 12.8 14.5 1.3 9.4 4.2 2.5 2 1 0 2 2 2 0 Syntaxin 6, N-terminal HCMV_UL139 PF12507.3 gi|385804858|ref|YP_005841258.1| - 0.12 12.5 6.9 4.6 7.4 0.1 2.1 2 0 0 2 2 2 0 Human Cytomegalovirus UL139 protein DUF4140 PF13600.1 gi|385804858|ref|YP_005841258.1| - 0.13 12.7 20.9 0.59 10.6 3.4 2.7 1 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) EMP24_GP25L PF01105.19 gi|385804858|ref|YP_005841258.1| - 0.15 11.8 13.4 0.73 9.5 2.7 2.2 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD DUF948 PF06103.6 gi|385804858|ref|YP_005841258.1| - 0.15 11.9 13.1 1.5 8.7 0.7 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) COG5 PF10392.4 gi|385804858|ref|YP_005841258.1| - 0.2 11.6 7.0 3.6 7.5 0.2 2.3 2 0 0 2 2 2 0 Golgi transport complex subunit 5 DUF607 PF04678.8 gi|385804858|ref|YP_005841258.1| - 0.2 11.5 10.2 0.98 9.3 2.2 2.2 1 1 0 2 2 2 0 Protein of unknown function, DUF607 DUF2353 PF09789.4 gi|385804858|ref|YP_005841258.1| - 0.22 10.7 13.4 0.4 9.8 9.3 1.4 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) DUF2130 PF09903.4 gi|385804858|ref|YP_005841258.1| - 0.23 10.1 8.7 1.1 7.9 2.2 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2130) Baculo_PEP_C PF04513.7 gi|385804858|ref|YP_005841258.1| - 0.23 11.2 17.1 0.52 10.1 1.4 2.1 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus STAT_alpha PF01017.15 gi|385804858|ref|YP_005841258.1| - 0.24 11.1 20.7 1.2 8.8 0.8 2.1 2 0 0 2 2 2 0 STAT protein, all-alpha domain DUF2746 PF10874.3 gi|385804858|ref|YP_005841258.1| - 0.24 11.6 9.9 0.33 11.1 0.7 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF2746) OmpH PF03938.9 gi|385804858|ref|YP_005841258.1| - 0.24 11.3 28.6 0.82 9.5 2.8 2.1 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Prefoldin_3 PF13758.1 gi|385804858|ref|YP_005841258.1| - 0.25 11.1 8.4 4.9 6.9 4.8 2.8 1 1 0 1 1 1 0 Prefoldin subunit PhoU PF01895.14 gi|385804858|ref|YP_005841258.1| - 0.25 11.7 13.6 0.64 10.4 2.2 2.4 2 1 0 2 2 2 0 PhoU domain GrpE PF01025.14 gi|385804858|ref|YP_005841258.1| - 0.26 10.8 17.9 0.93 9.0 1.1 2.2 2 0 0 2 2 2 0 GrpE Hemagglutinin PF00509.13 gi|385804858|ref|YP_005841258.1| - 0.26 9.3 10.5 0.29 9.2 0.2 2.0 2 0 0 2 2 2 0 Haemagglutinin Mod_r PF07200.8 gi|385804858|ref|YP_005841258.1| - 0.3 11.0 19.3 1.3 8.8 1.5 2.1 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein DivIVA PF05103.8 gi|385804858|ref|YP_005841258.1| - 0.31 11.1 22.1 0.31 11.0 2.0 2.2 2 0 0 2 2 2 0 DivIVA protein DUF3375 PF11855.3 gi|385804858|ref|YP_005841258.1| - 0.31 9.7 15.1 0.73 8.5 2.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3375) Sec34 PF04136.10 gi|385804858|ref|YP_005841258.1| - 0.31 10.7 11.1 1.9 8.1 0.8 2.1 2 0 0 2 2 2 0 Sec34-like family FliJ PF02050.11 gi|385804858|ref|YP_005841258.1| - 0.32 11.0 25.1 0.067 13.2 1.4 2.5 2 1 0 2 2 2 0 Flagellar FliJ protein Tektin PF03148.9 gi|385804858|ref|YP_005841258.1| - 0.33 9.4 17.5 1 7.8 1.3 2.1 2 0 0 2 2 2 0 Tektin family Rootletin PF15035.1 gi|385804858|ref|YP_005841258.1| - 0.34 10.8 17.3 1.4 8.8 5.0 2.1 2 0 0 2 2 2 0 Ciliary rootlet component, centrosome cohesion FlaC_arch PF05377.6 gi|385804858|ref|YP_005841258.1| - 0.34 10.8 15.2 1.5 8.8 2.3 3.6 2 2 0 2 2 2 0 Flagella accessory protein C (FlaC) ATG16 PF08614.6 gi|385804858|ref|YP_005841258.1| - 0.35 10.6 24.4 2.9 7.6 3.3 2.1 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) Occludin_ELL PF07303.8 gi|385804858|ref|YP_005841258.1| - 0.36 11.5 11.9 1.5 9.6 0.7 2.3 2 0 0 2 2 2 0 Occludin homology domain SYCE1 PF15233.1 gi|385804858|ref|YP_005841258.1| - 0.42 10.5 17.7 0.68 9.8 2.6 2.3 2 0 0 2 2 2 0 Synaptonemal complex central element protein 1 NTR2 PF15458.1 gi|385804858|ref|YP_005841258.1| - 0.45 9.6 22.3 0.58 9.3 4.5 2.4 2 0 0 2 2 2 0 Nineteen complex-related protein 2 Nsp1_C PF05064.8 gi|385804858|ref|YP_005841258.1| - 0.47 10.1 20.8 0.99 9.0 6.7 2.4 2 0 0 2 2 2 0 Nsp1-like C-terminal region Not3 PF04065.10 gi|385804858|ref|YP_005841258.1| - 0.47 9.6 17.1 0.43 9.8 5.6 2.1 2 0 0 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component DUF3552 PF12072.3 gi|385804858|ref|YP_005841258.1| - 0.5 9.5 23.9 0.42 9.7 8.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) Bap31 PF05529.7 gi|385804858|ref|YP_005841258.1| - 0.5 9.7 13.7 1.8 7.9 3.6 2.2 2 0 0 2 2 2 0 B-cell receptor-associated protein 31-like HemX PF04375.9 gi|385804858|ref|YP_005841258.1| - 0.51 8.8 23.6 0.96 7.9 2.5 2.2 1 1 0 2 2 2 0 HemX Fzo_mitofusin PF04799.8 gi|385804858|ref|YP_005841258.1| - 0.52 9.6 13.3 2 7.7 3.3 2.1 2 0 0 2 2 2 0 fzo-like conserved region Sas10_Utp3 PF04000.10 gi|385804858|ref|YP_005841258.1| - 0.56 10.4 11.2 0.56 10.4 0.7 2.6 2 1 0 2 2 2 0 Sas10/Utp3/C1D family AAA_27 PF13514.1 gi|385804858|ref|YP_005841258.1| - 0.6 7.7 20.5 1.6 6.3 14.2 1.6 1 1 0 1 1 1 0 AAA domain Dor1 PF04124.7 gi|385804858|ref|YP_005841258.1| - 0.65 8.3 14.6 0.82 8.0 0.9 2.1 2 0 0 2 2 2 0 Dor1-like family DUF1515 PF07439.6 gi|385804858|ref|YP_005841258.1| - 0.67 9.7 11.9 0.17 11.6 0.8 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF1515) Rop-like PF05082.8 gi|385804858|ref|YP_005841258.1| - 0.67 9.4 5.8 1.4 8.4 0.6 2.9 2 1 0 2 2 2 0 Rop-like Med9 PF07544.8 gi|385804858|ref|YP_005841258.1| - 0.7 9.6 17.6 0.057 13.1 3.3 2.5 2 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Tup_N PF08581.5 gi|385804858|ref|YP_005841258.1| - 0.83 9.8 18.7 2.5 8.3 5.7 2.5 2 0 0 2 2 2 0 Tup N-terminal FliD_N PF02465.13 gi|385804858|ref|YP_005841258.1| - 0.85 10.0 0.1 0.85 10.0 0.0 3.1 2 1 1 3 3 2 0 Flagellar hook-associated protein 2 N-terminus Macoilin PF09726.4 gi|385804858|ref|YP_005841258.1| - 0.86 7.8 19.3 0.087 11.1 6.8 1.7 1 1 1 2 2 2 0 Transmembrane protein DUF2935 PF11155.3 gi|385804858|ref|YP_005841258.1| - 0.89 9.6 4.4 23 5.0 1.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF2935) Tmemb_cc2 PF10267.4 gi|385804858|ref|YP_005841258.1| - 0.95 7.9 14.0 0.68 8.4 1.1 2.1 2 0 0 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein LUC7 PF03194.10 gi|385804858|ref|YP_005841258.1| - 1 8.8 19.9 5.2e+02 -0.1 13.8 2.1 1 1 0 1 1 1 0 LUC7 N_terminus HALZ PF02183.13 gi|385804858|ref|YP_005841258.1| - 1.1 9.0 13.0 4.3 7.1 2.3 2.9 2 1 0 2 2 2 0 Homeobox associated leucine zipper Lectin_N PF03954.9 gi|385804858|ref|YP_005841258.1| - 1.1 8.6 11.1 1.8 7.9 3.6 2.1 2 0 0 2 2 2 0 Hepatic lectin, N-terminal domain Potyvirid-P3 PF13608.1 gi|385804858|ref|YP_005841258.1| - 1.1 8.2 11.1 0.089 11.9 0.2 2.0 2 0 0 2 2 2 0 Protein P3 of Potyviral polyprotein Hormone_1 PF00103.15 gi|385804858|ref|YP_005841258.1| - 1.3 8.3 7.7 1.9 7.8 2.5 2.0 2 0 0 2 2 2 0 Somatotropin hormone family DUF3373 PF11853.3 gi|385804858|ref|YP_005841258.1| - 1.3 7.4 17.5 0.8 8.1 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3373) TMCO5 PF14992.1 gi|385804858|ref|YP_005841258.1| - 1.3 8.0 18.9 0.23 10.5 4.8 2.0 2 0 0 2 2 2 0 TMCO5 family DUF2232 PF09991.4 gi|385804858|ref|YP_005841258.1| - 1.3 7.9 3.2 2.1 7.2 2.3 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2232) DASH_Dam1 PF08653.5 gi|385804858|ref|YP_005841258.1| - 1.3 8.8 10.5 2.3 8.0 0.6 3.2 2 2 0 2 2 2 0 DASH complex subunit Dam1 DUF2205 PF10224.4 gi|385804858|ref|YP_005841258.1| - 1.4 8.5 15.6 0.26 10.8 0.6 2.5 2 1 0 2 2 2 0 Predicted coiled-coil protein (DUF2205) Snapin_Pallidin PF14712.1 gi|385804858|ref|YP_005841258.1| - 1.4 9.2 23.0 3.6 7.9 1.7 3.0 2 2 1 3 3 3 0 Snapin/Pallidin Cob_adeno_trans PF01923.13 gi|385804858|ref|YP_005841258.1| - 1.5 8.5 10.9 2.3 7.9 2.9 2.6 1 1 1 2 2 2 0 Cobalamin adenosyltransferase MIS13 PF08202.6 gi|385804858|ref|YP_005841258.1| - 1.5 7.7 16.4 4.5 6.2 11.4 1.6 1 1 0 1 1 1 0 Mis12-Mtw1 protein family Atg14 PF10186.4 gi|385804858|ref|YP_005841258.1| - 1.5 7.6 21.0 0.66 8.8 1.8 2.0 1 1 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 P4Ha_N PF08336.6 gi|385804858|ref|YP_005841258.1| - 1.6 8.5 11.8 6 6.6 3.0 2.5 2 0 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Transposase_22 PF02994.9 gi|385804858|ref|YP_005841258.1| - 1.6 7.1 14.2 1.8 6.9 0.7 2.0 1 1 1 2 2 2 0 L1 transposable element DUF2514 PF10721.4 gi|385804858|ref|YP_005841258.1| - 1.6 8.3 11.7 0.69 9.5 0.1 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2514) CCDC155 PF14662.1 gi|385804858|ref|YP_005841258.1| - 1.8 8.0 28.6 2.7 7.5 4.6 2.1 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 ERM PF00769.14 gi|385804858|ref|YP_005841258.1| - 1.8 8.0 24.0 4.9 6.6 8.6 2.1 1 1 1 2 2 2 0 Ezrin/radixin/moesin family DUF4164 PF13747.1 gi|385804858|ref|YP_005841258.1| - 2.1 8.5 20.1 5 7.3 2.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) Adeno_PIX PF03955.9 gi|385804858|ref|YP_005841258.1| - 2.2 8.8 9.7 4.5 7.8 2.5 2.4 2 0 0 2 2 2 0 Adenovirus hexon-associated protein (IX) Herpes_UL6 PF01763.11 gi|385804858|ref|YP_005841258.1| - 2.2 6.3 14.2 0.37 8.9 5.5 1.9 1 1 1 2 2 2 0 Herpesvirus UL6 like HrpB7 PF09486.5 gi|385804858|ref|YP_005841258.1| - 2.4 8.0 19.5 0.33 10.8 4.1 2.5 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) Pox_A_type_inc PF04508.7 gi|385804858|ref|YP_005841258.1| - 2.5 8.1 8.5 2.7 8.0 2.0 2.8 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat V_ATPase_I PF01496.14 gi|385804858|ref|YP_005841258.1| - 2.5 5.8 18.4 0.68 7.7 1.6 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family KLRAQ PF10205.4 gi|385804858|ref|YP_005841258.1| - 2.7 8.0 16.9 2.5 8.1 5.8 2.2 2 0 0 2 2 2 0 Predicted coiled-coil domain-containing protein DUF1759 PF03564.10 gi|385804858|ref|YP_005841258.1| - 2.7 7.8 6.3 5.1 6.8 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1759) DUF745 PF05335.8 gi|385804858|ref|YP_005841258.1| - 2.7 7.4 15.9 2 7.8 0.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF745) IL2 PF00715.12 gi|385804858|ref|YP_005841258.1| - 2.8 7.6 5.2 0.62 9.7 0.1 2.1 1 1 1 2 2 1 0 Interleukin 2 Cauli_AT PF03233.8 gi|385804858|ref|YP_005841258.1| - 2.9 7.5 7.4 4.9 6.8 0.3 2.2 2 0 0 2 2 2 0 Aphid transmission protein DUF2120 PF09893.4 gi|385804858|ref|YP_005841258.1| - 2.9 7.8 7.5 5.5 6.9 0.3 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2120) Nup54 PF13874.1 gi|385804858|ref|YP_005841258.1| - 3 7.5 18.2 2 8.0 1.3 2.2 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 Syntaxin PF00804.20 gi|385804858|ref|YP_005841258.1| - 3.2 7.9 24.6 72 3.6 17.0 2.2 1 1 0 1 1 1 0 Syntaxin Viral_P18 PF04521.8 gi|385804858|ref|YP_005841258.1| - 3.3 7.1 13.2 9.6 5.6 4.8 2.5 2 1 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein Med4 PF10018.4 gi|385804858|ref|YP_005841258.1| - 3.4 7.0 18.0 2.5 7.4 1.3 2.2 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Lge1 PF11488.3 gi|385804858|ref|YP_005841258.1| - 3.4 7.9 13.6 4.8 7.4 2.1 2.5 2 1 0 2 2 2 0 Transcriptional regulatory protein LGE1 DASH_Spc34 PF08657.5 gi|385804858|ref|YP_005841258.1| - 3.5 7.2 20.6 1.1 8.8 1.8 2.1 2 0 0 2 2 2 0 DASH complex subunit Spc34 DUF883 PF05957.8 gi|385804858|ref|YP_005841258.1| - 3.5 8.0 11.1 3.9 7.9 2.7 2.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) CENP-H PF05837.7 gi|385804858|ref|YP_005841258.1| - 3.9 7.7 21.7 6.5 6.9 7.6 2.7 2 1 0 2 2 2 0 Centromere protein H (CENP-H) CCDC-167 PF15188.1 gi|385804858|ref|YP_005841258.1| - 4.4 7.3 12.1 4.5 7.2 2.4 2.8 2 1 0 2 2 2 0 Coiled-coil domain-containing protein 167 SlyX PF04102.7 gi|385804858|ref|YP_005841258.1| - 4.8 7.6 30.2 3.6 8.0 4.0 2.4 2 0 0 2 2 2 0 SlyX Rho_Binding PF08912.6 gi|385804858|ref|YP_005841258.1| - 5 7.4 17.3 0.69 10.2 4.6 2.7 2 1 0 2 2 2 0 Rho Binding HAUS6_N PF14661.1 gi|385804858|ref|YP_005841258.1| - 5.2 6.3 17.5 3.2 7.0 0.4 2.1 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus DUF4391 PF14335.1 gi|385804858|ref|YP_005841258.1| - 5.4 6.3 10.9 1.1 8.5 2.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4391) MscS_porin PF12795.2 gi|385804858|ref|YP_005841258.1| - 5.4 6.2 38.7 6.8e+02 -0.7 26.8 2.1 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain PCRF PF03462.13 gi|385804858|ref|YP_005841258.1| - 5.8 6.6 14.2 0.67 9.6 0.7 2.5 2 1 0 2 2 2 0 PCRF domain COG6 PF06419.6 gi|385804858|ref|YP_005841258.1| - 5.8 4.9 17.9 3.1 5.8 1.6 2.0 2 0 0 2 2 2 0 Conserved oligomeric complex COG6 CENP-Q PF13094.1 gi|385804858|ref|YP_005841258.1| - 5.9 6.8 23.1 1.9 8.4 7.0 2.2 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Tnp_P_element PF12017.3 gi|385804858|ref|YP_005841258.1| - 6.5 5.9 11.9 6.7 5.8 3.0 2.2 2 0 0 2 2 2 0 Transposase protein DUF1192 PF06698.6 gi|385804858|ref|YP_005841258.1| - 6.7 6.5 12.2 3.8 7.3 1.0 2.9 2 2 0 2 2 2 0 Protein of unknown function (DUF1192) DUF4407 PF14362.1 gi|385804858|ref|YP_005841258.1| - 7.6 5.3 21.9 50 2.7 15.1 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) TMPIT PF07851.8 gi|385804858|ref|YP_005841258.1| - 7.6 5.4 10.5 6.9 5.6 0.1 2.0 2 0 0 2 2 2 0 TMPIT-like protein SPT16 PF08644.6 gi|385804858|ref|YP_005841258.1| - 7.8 6.3 12.0 23 4.7 0.1 2.1 1 1 1 2 2 2 0 FACT complex subunit (SPT16/CDC68) Phasin PF05597.6 gi|385804858|ref|YP_005841258.1| - 8.2 6.2 12.6 6.3 6.5 0.7 2.8 2 1 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) PRKCSH_1 PF13015.1 gi|385804858|ref|YP_005841258.1| - 8.8 5.7 7.7 5.6 6.4 0.3 2.3 2 0 0 2 2 2 0 Glucosidase II beta subunit-like protein Peptidase_M16 PF00675.15 gi|385804858|ref|YP_005841258.1| - 9 6.0 10.2 3.1 7.5 2.2 2.1 2 0 0 2 2 2 0 Insulinase (Peptidase family M16) DUF16 PF01519.11 gi|385804858|ref|YP_005841258.1| - 9.4 6.5 18.1 7.5 6.8 2.8 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF16 Exonuc_VII_S PF02609.11 gi|385804858|ref|YP_005841258.1| - 9.7 6.0 15.7 0.13 12.0 1.8 3.1 2 2 0 2 2 2 0 Exonuclease VII small subunit HR1 PF02185.11 gi|385804858|ref|YP_005841258.1| - 9.9 5.9 22.4 0.23 11.2 1.8 3.1 2 1 0 2 2 1 0 Hr1 repeat Ribosomal_L18ae PF01775.12 gi|385804859|ref|YP_005841259.1| - 1e-11 44.7 0.0 1.2e-11 44.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain eIF-6 PF01912.13 gi|385804860|ref|YP_005841260.1| - 2.3e-69 232.5 0.3 2.9e-69 232.1 0.2 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.14 gi|385804861|ref|YP_005841261.1| - 4.9e-27 93.4 0.0 6.1e-27 93.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.15 gi|385804862|ref|YP_005841262.1| - 3.4e-21 74.4 7.3 4e-21 74.1 5.0 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein TPR_11 PF13414.1 gi|385804863|ref|YP_005841263.1| - 1.1e-25 89.0 12.0 1.3e-12 47.2 1.2 3.2 1 1 1 3 3 3 3 TPR repeat TPR_1 PF00515.23 gi|385804863|ref|YP_005841263.1| - 1.9e-25 87.3 0.4 1.2e-06 27.9 0.0 5.0 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|385804863|ref|YP_005841263.1| - 8.2e-24 81.5 6.8 4.9e-05 22.9 0.1 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|385804863|ref|YP_005841263.1| - 2.6e-17 62.5 11.2 1.4e-07 31.2 2.3 3.2 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|385804863|ref|YP_005841263.1| - 2.1e-16 60.1 11.9 4.2e-10 40.0 0.7 3.3 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|385804863|ref|YP_005841263.1| - 2.6e-16 58.0 0.0 0.0036 16.9 0.0 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|385804863|ref|YP_005841263.1| - 1.9e-13 49.7 14.3 1.7e-05 25.0 0.3 4.9 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_9 PF13371.1 gi|385804863|ref|YP_005841263.1| - 4.3e-12 45.6 3.7 9.1e-06 25.4 0.2 3.4 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|385804863|ref|YP_005841263.1| - 1.4e-11 43.6 1.3 0.0018 18.2 0.0 4.7 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|385804863|ref|YP_005841263.1| - 2.9e-10 39.1 7.7 0.00042 19.8 0.1 5.2 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|385804863|ref|YP_005841263.1| - 8.4e-08 32.1 3.0 2.2 8.9 0.0 5.1 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|385804863|ref|YP_005841263.1| - 2e-06 28.0 9.5 0.0099 16.2 0.4 3.3 2 1 0 3 3 3 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|385804863|ref|YP_005841263.1| - 5e-05 23.0 16.5 0.031 14.2 0.3 4.7 5 0 0 5 5 5 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|385804863|ref|YP_005841263.1| - 0.00015 21.8 0.0 0.58 10.3 0.0 2.4 1 1 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 Apc5 PF12862.2 gi|385804863|ref|YP_005841263.1| - 0.00038 20.2 1.0 0.54 10.1 0.1 3.4 1 1 1 2 2 2 1 Anaphase-promoting complex subunit 5 TPR_4 PF07721.9 gi|385804863|ref|YP_005841263.1| - 0.00046 20.3 13.1 0.018 15.3 1.0 4.7 5 0 0 5 5 5 1 Tetratricopeptide repeat DUF3856 PF12968.2 gi|385804863|ref|YP_005841263.1| - 0.00061 19.6 11.1 0.023 14.4 0.5 4.1 1 1 2 3 3 3 1 Domain of Unknown Function (DUF3856) YfiO PF13525.1 gi|385804863|ref|YP_005841263.1| - 0.00066 19.2 0.4 0.0033 16.9 0.1 1.9 1 1 1 2 2 2 1 Outer membrane lipoprotein TPR_20 PF14561.1 gi|385804863|ref|YP_005841263.1| - 0.0029 17.6 3.4 0.36 10.9 0.1 3.1 1 1 2 3 3 3 1 Tetratricopeptide repeat TPR_18 PF13512.1 gi|385804863|ref|YP_005841263.1| - 0.014 15.4 0.0 0.051 13.5 0.0 1.9 1 1 1 2 2 2 0 Tetratricopeptide repeat MIT PF04212.13 gi|385804863|ref|YP_005841263.1| - 0.45 10.4 7.1 6.6 6.6 0.2 3.3 2 1 0 3 3 3 0 MIT (microtubule interacting and transport) domain DUF424 PF04242.8 gi|385804864|ref|YP_005841264.1| - 1.3e-31 108.4 0.1 1.7e-31 108.0 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF424) Merozoite_SPAM PF07133.6 gi|385804864|ref|YP_005841264.1| - 1.9 8.3 6.7 3 7.7 4.6 1.3 1 0 0 1 1 1 0 Merozoite surface protein (SPAM) Cwf_Cwc_15 PF04889.7 gi|385804864|ref|YP_005841264.1| - 9.9 5.7 8.6 13 5.3 6.0 1.2 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein Aminotran_5 PF00266.14 gi|385804865|ref|YP_005841265.1| - 1.8e-148 494.2 0.0 2e-148 494.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|385804865|ref|YP_005841265.1| - 1.1e-11 44.3 0.0 7.4e-10 38.3 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|385804865|ref|YP_005841265.1| - 4.4e-09 35.9 0.0 5.8e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|385804865|ref|YP_005841265.1| - 2.1e-08 33.6 0.4 3.4e-08 32.9 0.3 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|385804865|ref|YP_005841265.1| - 0.00056 18.3 0.0 0.00086 17.6 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.14 gi|385804865|ref|YP_005841265.1| - 0.03 12.7 0.0 0.057 11.8 0.0 1.4 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain SelA PF03841.8 gi|385804865|ref|YP_005841265.1| - 0.039 12.6 0.0 0.081 11.6 0.0 1.5 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase NifU_N PF01592.11 gi|385804866|ref|YP_005841266.1| - 1.8e-27 95.7 0.1 2.2e-27 95.4 0.0 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain SufE PF02657.10 gi|385804866|ref|YP_005841266.1| - 0.0071 15.9 0.0 0.0083 15.7 0.0 1.1 1 0 0 1 1 1 1 Fe-S metabolism associated domain Lip_prot_lig_C PF10437.4 gi|385804866|ref|YP_005841266.1| - 0.092 12.4 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial lipoate protein ligase C-terminus TSCPD PF12637.2 gi|385804866|ref|YP_005841266.1| - 0.14 12.1 0.1 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 TSCPD domain Rad51 PF08423.6 gi|385804867|ref|YP_005841267.1| - 2.1e-75 252.9 0.0 5e-45 153.4 0.0 2.1 2 0 0 2 2 2 2 Rad51 HHH_5 PF14520.1 gi|385804867|ref|YP_005841267.1| - 3.3e-11 43.2 0.0 9.2e-11 41.7 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain AAA_25 PF13481.1 gi|385804867|ref|YP_005841267.1| - 5.5e-10 38.9 0.1 8.5e-10 38.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|385804867|ref|YP_005841267.1| - 6e-07 28.8 0.0 0.0047 16.0 0.0 2.2 2 0 0 2 2 2 2 recA bacterial DNA recombination protein HHH PF00633.18 gi|385804867|ref|YP_005841267.1| - 1.5e-05 24.3 0.1 0.011 15.3 0.0 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif KaiC PF06745.8 gi|385804867|ref|YP_005841267.1| - 6.8e-05 22.0 0.0 0.00055 19.1 0.0 2.1 2 0 0 2 2 2 1 KaiC HHH_2 PF12826.2 gi|385804867|ref|YP_005841267.1| - 0.0001 22.1 0.0 0.00031 20.5 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|385804867|ref|YP_005841267.1| - 0.00011 22.0 0.0 0.00036 20.3 0.0 1.9 2 0 0 2 2 2 1 Pathogenicity locus AAA_22 PF13401.1 gi|385804867|ref|YP_005841267.1| - 0.011 15.8 0.0 0.056 13.5 0.0 2.1 2 1 0 2 2 2 0 AAA domain IMS_HHH PF11798.3 gi|385804867|ref|YP_005841267.1| - 0.032 14.2 0.0 0.14 12.2 0.0 2.2 2 0 0 2 2 2 0 IMS family HHH motif DNA_pol_lambd_f PF10391.4 gi|385804867|ref|YP_005841267.1| - 0.052 13.0 0.0 0.24 10.9 0.0 2.2 1 1 1 2 2 2 0 Fingers domain of DNA polymerase lambda Peptidase_M48 PF01435.13 gi|385804869|ref|YP_005841269.1| - 7.8e-41 140.0 0.0 1e-40 139.7 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|385804869|ref|YP_005841269.1| - 5.8e-07 28.7 0.7 8.8e-06 24.8 0.0 2.2 2 0 0 2 2 2 1 BlaR1 peptidase M56 SprT-like PF10263.4 gi|385804869|ref|YP_005841269.1| - 0.0022 17.6 0.0 0.0032 17.1 0.0 1.2 1 0 0 1 1 1 1 SprT-like family Tic20 PF09685.5 gi|385804869|ref|YP_005841269.1| - 0.016 15.1 4.9 1.1 9.3 0.3 2.2 2 0 0 2 2 2 0 Tic20-like protein DUF420 PF04238.7 gi|385804869|ref|YP_005841269.1| - 0.027 14.4 0.3 0.027 14.4 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF420) DUF3007 PF11460.3 gi|385804869|ref|YP_005841269.1| - 0.071 13.1 0.1 0.17 11.9 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) Peptidase_MA_2 PF13485.1 gi|385804869|ref|YP_005841269.1| - 0.12 12.4 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 Peptidase MA superfamily DUF2201_N PF13203.1 gi|385804869|ref|YP_005841269.1| - 0.12 11.5 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 Putative metallopeptidase domain MENTAL PF10457.4 gi|385804869|ref|YP_005841269.1| - 0.13 11.8 0.0 0.13 11.8 0.0 1.8 2 0 0 2 2 2 0 Cholesterol-capturing domain DUF1469 PF07332.6 gi|385804869|ref|YP_005841269.1| - 0.36 10.5 4.0 1.4 8.6 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) NMD3 PF04981.8 gi|385804870|ref|YP_005841270.1| - 1.4e-67 227.2 0.2 1.7e-67 226.9 0.1 1.1 1 0 0 1 1 1 1 NMD3 family Thioredoxin_2 PF13098.1 gi|385804870|ref|YP_005841270.1| - 0.077 13.2 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 Thioredoxin-like domain DZR PF12773.2 gi|385804870|ref|YP_005841270.1| - 0.099 12.4 6.0 3.9 7.3 2.8 3.1 2 1 0 2 2 2 0 Double zinc ribbon zf-FPG_IleRS PF06827.9 gi|385804870|ref|YP_005841270.1| - 0.14 11.7 11.8 0.61 9.7 1.2 4.1 3 1 0 3 3 3 0 Zinc finger found in FPG and IleRS FYVE PF01363.16 gi|385804870|ref|YP_005841270.1| - 0.31 10.9 4.9 2.2 8.2 0.7 2.6 2 0 0 2 2 2 0 FYVE zinc finger zinc_ribbon_2 PF13240.1 gi|385804870|ref|YP_005841270.1| - 0.4 10.2 5.3 4.6 6.8 0.1 3.4 3 0 0 3 3 3 0 zinc-ribbon domain DUF35_N PF12172.3 gi|385804870|ref|YP_005841270.1| - 0.47 10.4 0.1 0.47 10.4 0.1 3.0 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.7 gi|385804870|ref|YP_005841270.1| - 0.68 9.2 6.4 7.3 6.0 0.5 3.5 3 1 0 3 3 3 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|385804870|ref|YP_005841270.1| - 0.8 8.9 9.5 3.3 7.0 0.1 3.5 4 0 0 4 4 4 0 zinc-ribbon domain DUF4193 PF13834.1 gi|385804870|ref|YP_005841270.1| - 1.3 9.1 4.5 2.4 8.4 0.1 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4193) Rpr2 PF04032.11 gi|385804870|ref|YP_005841270.1| - 1.4 8.8 4.8 1.6 8.6 0.0 2.9 2 1 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain GFA PF04828.9 gi|385804870|ref|YP_005841270.1| - 1.7 8.6 5.1 17 5.4 0.0 3.2 2 1 0 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-NADH-PPase PF09297.6 gi|385804870|ref|YP_005841270.1| - 7.8 6.0 9.4 3.2 7.3 0.1 3.2 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain UPF0175 PF03683.8 gi|385804871|ref|YP_005841271.1| - 2.1e-09 36.7 0.0 2.5e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) DUF732 PF05305.9 gi|385804871|ref|YP_005841271.1| - 0.017 15.1 0.0 0.018 15.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF732) HTH_AraC PF00165.18 gi|385804871|ref|YP_005841271.1| - 0.023 14.5 0.0 0.031 14.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family Helicase_C_2 PF13307.1 gi|385804872|ref|YP_005841272.1| - 3.2e-21 75.9 0.0 4.8e-21 75.4 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|385804872|ref|YP_005841272.1| - 7.1e-07 28.8 0.0 1.2e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.10 gi|385804872|ref|YP_005841272.1| - 1.8e-05 24.6 0.0 0.0043 16.9 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|385804872|ref|YP_005841272.1| - 0.00012 21.6 0.0 0.067 12.6 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|385804872|ref|YP_005841272.1| - 0.00027 20.6 0.1 0.00076 19.1 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|385804872|ref|YP_005841272.1| - 0.00095 19.3 0.0 0.0084 16.2 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|385804872|ref|YP_005841272.1| - 0.0021 17.6 0.3 1.4 8.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|385804872|ref|YP_005841272.1| - 0.012 15.1 0.3 2.5 7.4 0.0 2.4 2 0 0 2 2 2 0 AAA-like domain DXP_redisom_C PF08436.7 gi|385804872|ref|YP_005841272.1| - 0.029 14.2 0.0 0.095 12.5 0.0 1.8 2 0 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal AAA_16 PF13191.1 gi|385804872|ref|YP_005841272.1| - 0.03 14.3 2.0 0.18 11.7 0.0 3.0 3 1 1 4 4 4 0 AAA ATPase domain AAA PF00004.24 gi|385804872|ref|YP_005841272.1| - 0.16 12.2 0.0 1.4 9.1 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PhoH PF02562.11 gi|385804872|ref|YP_005841272.1| - 0.16 11.1 0.0 0.31 10.2 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein Mg_chelatase PF01078.16 gi|385804872|ref|YP_005841272.1| - 0.16 11.0 0.0 0.28 10.2 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF4428 PF14471.1 gi|385804873|ref|YP_005841273.1| - 0.055 13.2 0.3 0.093 12.4 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) PHP PF02811.14 gi|385804877|ref|YP_005841277.1| - 3.4e-13 49.7 0.0 9.1e-13 48.3 0.0 1.6 1 1 0 1 1 1 1 PHP domain YyzF PF14116.1 gi|385804878|ref|YP_005841278.1| - 0.66 9.9 6.1 0.27 11.2 1.3 2.0 2 0 0 2 2 2 0 YyzF-like protein PyrI_C PF02748.10 gi|385804878|ref|YP_005841278.1| - 0.69 9.3 2.8 0.91 9.0 1.1 1.8 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain DDE_Tnp_IS1595 PF12762.2 gi|385804879|ref|YP_005841279.1| - 1.9e-23 82.9 0.0 3e-23 82.3 0.0 1.2 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.2 gi|385804879|ref|YP_005841279.1| - 1.5e-10 40.6 4.8 2.9e-10 39.7 3.3 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|385804879|ref|YP_005841279.1| - 1.3e-05 24.5 6.4 3.3e-05 23.2 4.5 1.7 1 0 0 1 1 1 1 InsA N-terminal domain DUF2089 PF09862.4 gi|385804879|ref|YP_005841279.1| - 0.026 14.3 0.0 0.04 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) Auxin_inducible PF02519.9 gi|385804879|ref|YP_005841279.1| - 0.035 14.1 0.0 0.063 13.3 0.0 1.3 1 0 0 1 1 1 0 Auxin responsive protein zf-ISL3 PF14690.1 gi|385804879|ref|YP_005841279.1| - 0.11 12.6 8.7 0.19 11.7 0.7 2.8 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-Dof PF02701.10 gi|385804879|ref|YP_005841279.1| - 0.11 12.4 3.8 0.2 11.5 2.6 1.4 1 0 0 1 1 1 0 Dof domain, zinc finger Zn-ribbon_8 PF09723.5 gi|385804879|ref|YP_005841279.1| - 0.55 10.2 4.7 6.7 6.7 0.4 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zf-C2H2_6 PF13912.1 gi|385804879|ref|YP_005841279.1| - 5 7.1 6.8 1.1 9.2 0.2 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger SNARE_assoc PF09335.6 gi|385804880|ref|YP_005841280.1| - 1.2e-10 41.7 1.5 1.7e-10 41.1 1.0 1.3 1 1 0 1 1 1 1 SNARE associated Golgi protein ALAD PF00490.16 gi|385804881|ref|YP_005841281.1| - 1.1e-137 458.2 0.8 1.3e-137 458.0 0.6 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Ammonium_transp PF00909.16 gi|385804882|ref|YP_005841282.1| - 2e-96 322.8 41.8 2.3e-96 322.6 29.0 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family PsbY PF06298.6 gi|385804882|ref|YP_005841282.1| - 0.033 13.7 1.1 1.4 8.5 0.0 2.9 2 0 0 2 2 2 0 Photosystem II protein Y (PsbY) P-II PF00543.17 gi|385804883|ref|YP_005841283.1| - 2.6e-32 111.3 0.0 3.1e-32 111.0 0.0 1.1 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Aminotran_3 PF00202.16 gi|385804885|ref|YP_005841285.1| - 1e-64 218.5 0.0 1.3e-64 218.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|385804885|ref|YP_005841285.1| - 0.0036 16.2 0.0 0.0086 15.0 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class I and II Porphobil_deam PF01379.15 gi|385804886|ref|YP_005841286.1| - 5.5e-60 201.9 0.7 3.2e-48 163.5 0.1 2.1 2 0 0 2 2 2 2 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|385804886|ref|YP_005841286.1| - 2.8e-10 40.1 0.0 6.8e-10 38.9 0.0 1.7 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Uds1 PF15456.1 gi|385804886|ref|YP_005841286.1| - 0.0012 18.8 1.9 0.0012 18.8 1.3 1.8 2 0 0 2 2 2 1 Up-regulated During Septation TP_methylase PF00590.15 gi|385804887|ref|YP_005841287.1| - 5.3e-47 160.2 0.7 6.3e-47 159.9 0.5 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases HEM4 PF02602.10 gi|385804888|ref|YP_005841288.1| - 4.5e-44 150.4 1.1 5.7e-44 150.0 0.7 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD DUF4538 PF15061.1 gi|385804889|ref|YP_005841289.1| - 0.27 10.5 0.1 0.27 10.5 0.1 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4538) Tmemb_170 PF10190.4 gi|385804889|ref|YP_005841289.1| - 5.2 7.1 10.5 0.58 10.2 4.1 1.7 2 0 0 2 2 2 0 Putative transmembrane protein 170 Cys_Met_Meta_PP PF01053.15 gi|385804890|ref|YP_005841290.1| - 5.2e-136 452.9 0.0 5.9e-136 452.7 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|385804890|ref|YP_005841290.1| - 3.1e-06 26.3 0.0 4.5e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|385804890|ref|YP_005841290.1| - 1.8e-05 23.9 0.7 3.4e-05 23.0 0.5 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|385804890|ref|YP_005841290.1| - 0.00015 20.6 1.0 0.00026 19.8 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|385804890|ref|YP_005841290.1| - 0.0023 17.1 0.1 0.0045 16.1 0.1 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase SLA_LP_auto_ag PF05889.8 gi|385804890|ref|YP_005841290.1| - 0.08 11.4 0.0 0.12 10.8 0.0 1.3 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) PHO4 PF01384.15 gi|385804891|ref|YP_005841291.1| - 2.3e-72 243.3 28.2 3.1e-72 242.9 19.5 1.1 1 0 0 1 1 1 1 Phosphate transporter family Fer2 PF00111.22 gi|385804892|ref|YP_005841292.1| - 7.8e-15 54.3 0.3 1.3e-14 53.7 0.2 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|385804892|ref|YP_005841292.1| - 0.055 13.2 0.1 0.11 12.3 0.1 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Auto_anti-p27 PF06677.7 gi|385804893|ref|YP_005841293.1| - 2.9e-18 65.3 0.7 4e-18 64.8 0.5 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) GFA PF04828.9 gi|385804893|ref|YP_005841293.1| - 0.004 17.0 2.0 0.086 12.7 0.0 2.6 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme DZR PF12773.2 gi|385804893|ref|YP_005841293.1| - 0.0085 15.8 2.1 0.018 14.8 1.4 1.5 1 0 0 1 1 1 1 Double zinc ribbon DUF3279 PF11682.3 gi|385804893|ref|YP_005841293.1| - 0.03 13.8 0.9 0.058 12.9 0.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3279) HypA PF01155.14 gi|385804893|ref|YP_005841293.1| - 0.054 13.1 0.6 0.094 12.4 0.4 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS91 PF14319.1 gi|385804893|ref|YP_005841293.1| - 0.054 12.9 1.1 0.11 11.9 0.7 1.5 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-FPG_IleRS PF06827.9 gi|385804893|ref|YP_005841293.1| - 0.097 12.3 3.6 0.23 11.1 2.5 1.6 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS zf-dskA_traR PF01258.12 gi|385804893|ref|YP_005841293.1| - 0.2 11.4 1.5 0.37 10.5 1.0 1.4 1 0 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger DUF605 PF04652.11 gi|385804893|ref|YP_005841293.1| - 0.59 9.4 22.8 0.72 9.1 15.8 1.1 1 0 0 1 1 1 0 Vta1 like zf-ribbon_3 PF13248.1 gi|385804893|ref|YP_005841293.1| - 0.6 9.4 2.9 1.2 8.4 2.0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain TFIIA PF03153.8 gi|385804893|ref|YP_005841293.1| - 2 8.2 22.1 2.5 7.8 15.3 1.3 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit DUF2116 PF09889.4 gi|385804893|ref|YP_005841293.1| - 2.1 8.2 4.6 4.1 7.2 0.7 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Macoilin PF09726.4 gi|385804893|ref|YP_005841293.1| - 2.4 6.3 26.5 2.9 6.0 18.4 1.1 1 0 0 1 1 1 0 Transmembrane protein Ldh_1_N PF00056.18 gi|385804894|ref|YP_005841294.1| - 8.6e-37 126.0 0.2 1.2e-36 125.6 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|385804894|ref|YP_005841294.1| - 2e-33 115.5 0.0 3.1e-33 114.9 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Semialdhyde_dh PF01118.19 gi|385804894|ref|YP_005841294.1| - 0.094 13.0 0.1 0.17 12.1 0.1 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DUF296 PF03479.10 gi|385804895|ref|YP_005841295.1| - 1.3e-27 95.7 0.0 1.5e-27 95.5 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) PolC_DP2 PF03833.8 gi|385804896|ref|YP_005841296.1| - 0 1274.2 0.1 0 1273.0 0.1 1.6 1 1 0 1 1 1 1 DNA polymerase II large subunit DP2 Hom_end PF05204.9 gi|385804896|ref|YP_005841296.1| - 2.7e-05 24.0 1.0 0.37 10.7 0.0 3.7 3 0 0 3 3 3 2 Homing endonuclease LAGLIDADG_3 PF14528.1 gi|385804896|ref|YP_005841296.1| - 8.7e-05 22.6 0.0 0.0062 16.7 0.0 3.1 3 0 0 3 3 3 1 LAGLIDADG-like domain Hint PF01079.15 gi|385804896|ref|YP_005841296.1| - 0.0024 17.1 0.1 1.3 8.2 0.0 2.5 2 0 0 2 2 2 2 Hint module TerY-C PF15616.1 gi|385804896|ref|YP_005841296.1| - 2.1 8.2 6.8 34 4.3 4.7 2.5 1 1 0 1 1 1 0 TerY-C metal binding domain HAD_2 PF13419.1 gi|385804897|ref|YP_005841297.1| - 8.4e-15 55.4 0.4 1.1e-14 55.1 0.3 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|385804897|ref|YP_005841297.1| - 1e-09 37.9 0.0 2.1e-09 36.9 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|385804897|ref|YP_005841297.1| - 3.7e-05 24.2 0.0 0.0013 19.1 0.0 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Sulfatase PF00884.18 gi|385804898|ref|YP_005841298.1| - 5e-45 154.0 0.6 7e-45 153.5 0.4 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|385804898|ref|YP_005841298.1| - 1.9e-12 47.1 3.2 2.2e-05 23.9 0.6 2.4 2 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.7 gi|385804898|ref|YP_005841298.1| - 0.11 11.3 1.3 0.17 10.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1501) DUF229 PF02995.12 gi|385804898|ref|YP_005841298.1| - 0.21 9.9 0.0 0.27 9.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF229) NifU PF01106.12 gi|385804899|ref|YP_005841299.1| - 3.7e-10 39.4 0.1 5.4e-10 38.8 0.1 1.3 1 1 0 1 1 1 1 NifU-like domain FliT PF05400.8 gi|385804900|ref|YP_005841300.1| - 0.094 13.1 1.1 1.3 9.5 0.9 2.0 1 1 1 2 2 2 0 Flagellar protein FliT Inhibitor_I42 PF09394.5 gi|385804900|ref|YP_005841300.1| - 0.097 13.0 0.0 0.17 12.2 0.0 1.4 1 0 0 1 1 1 0 Chagasin family peptidase inhibitor I42 EST1 PF10374.4 gi|385804900|ref|YP_005841300.1| - 0.14 12.1 0.9 0.21 11.5 0.6 1.4 1 1 0 1 1 1 0 Telomerase activating protein Est1 DUF3437 PF11919.3 gi|385804901|ref|YP_005841301.1| - 0.028 14.1 0.6 0.035 13.8 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3437) 7TMR-HDED PF07697.6 gi|385804901|ref|YP_005841301.1| - 0.058 13.1 1.0 0.063 12.9 0.7 1.0 1 0 0 1 1 1 0 7TM-HD extracellular TMF_TATA_bd PF12325.3 gi|385804902|ref|YP_005841302.1| - 0.038 13.7 3.5 0.047 13.4 0.6 1.9 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding PSK_trans_fac PF07704.6 gi|529167411|ref|YP_005841303.2| - 0.019 15.6 2.8 0.069 13.8 1.9 2.0 1 1 0 1 1 1 0 Rv0623-like transcription factor DUF935 PF06074.7 gi|529167411|ref|YP_005841303.2| - 0.043 12.5 1.0 0.048 12.3 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF935) DUF2805 PF10985.3 gi|529167411|ref|YP_005841303.2| - 0.063 13.2 0.3 0.11 12.4 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2805) HTH_27 PF13463.1 gi|529167411|ref|YP_005841303.2| - 0.17 12.2 0.5 0.76 10.1 0.0 2.2 3 0 0 3 3 3 0 Winged helix DNA-binding domain TSC22 PF01166.13 gi|385804906|ref|YP_005841306.1| - 0.0049 16.8 0.6 0.008 16.1 0.4 1.3 1 0 0 1 1 1 1 TSC-22/dip/bun family DUF2564 PF10819.3 gi|385804906|ref|YP_005841306.1| - 0.013 15.6 0.1 0.021 14.9 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2564) DUF3832 PF12909.2 gi|385804906|ref|YP_005841306.1| - 0.045 13.8 0.0 0.064 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3832) YtxH PF12732.2 gi|385804911|ref|YP_005841311.1| - 0.1 12.9 2.4 4.1 7.8 0.4 2.6 2 1 0 2 2 2 0 YtxH-like protein Ycf1 PF05758.7 gi|385804911|ref|YP_005841311.1| - 0.15 9.7 1.9 0.16 9.6 1.3 1.0 1 0 0 1 1 1 0 Ycf1 DUF1707 PF08044.6 gi|385804911|ref|YP_005841311.1| - 0.23 11.2 0.1 0.23 11.2 0.1 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1707) Flg_hook PF02120.11 gi|385804911|ref|YP_005841311.1| - 1.4 8.6 4.3 47 3.7 0.0 3.9 3 1 1 4 4 4 0 Flagellar hook-length control protein FliK PRA-PH PF01503.12 gi|385804911|ref|YP_005841311.1| - 1.4 9.2 5.4 1.6 9.0 1.7 2.3 2 1 0 2 2 2 0 Phosphoribosyl-ATP pyrophosphohydrolase Stn1 PF10451.4 gi|385804911|ref|YP_005841311.1| - 4.8 5.9 6.4 7.9 5.2 0.1 2.9 1 1 2 3 3 3 0 Telomere regulation protein Stn1 Syntaxin-6_N PF09177.6 gi|385804911|ref|YP_005841311.1| - 9.6 6.6 8.8 10 6.6 2.8 2.8 1 1 2 3 3 3 0 Syntaxin 6, N-terminal NIR_SIR_ferr PF03460.12 gi|385804913|ref|YP_005841313.1| - 0.024 14.2 0.0 0.82 9.3 0.0 2.2 2 0 0 2 2 2 0 Nitrite/Sulfite reductase ferredoxin-like half domain NTP_transf_5 PF14907.1 gi|385804914|ref|YP_005841314.1| - 1.3e-06 27.9 0.0 2.2e-06 27.2 0.0 1.4 1 1 0 1 1 1 1 Uncharacterised nucleotidyltransferase DUF1814 PF08843.6 gi|385804914|ref|YP_005841314.1| - 3.3e-06 27.0 0.5 1e-05 25.4 0.3 1.8 1 1 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF1814) Propep_M14 PF02244.11 gi|385804914|ref|YP_005841314.1| - 0.001 18.6 0.1 0.0031 17.1 0.0 1.9 2 0 0 2 2 2 1 Carboxypeptidase activation peptide NTP_transf_2 PF01909.18 gi|385804914|ref|YP_005841314.1| - 0.036 14.3 0.1 0.1 12.9 0.0 1.8 2 0 0 2 2 2 0 Nucleotidyltransferase domain HTH_23 PF13384.1 gi|385804915|ref|YP_005841315.1| - 0.00029 20.3 0.5 0.0016 18.0 0.0 2.4 2 1 1 3 3 3 1 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|385804915|ref|YP_005841315.1| - 0.0014 18.4 0.0 0.0035 17.2 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|385804915|ref|YP_005841315.1| - 0.0018 17.9 0.2 0.0061 16.1 0.1 1.9 1 1 1 2 2 2 1 MarR family HTH_1 PF00126.22 gi|385804915|ref|YP_005841315.1| - 0.0022 17.6 0.4 0.019 14.6 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family GntR PF00392.16 gi|385804915|ref|YP_005841315.1| - 0.0033 16.8 0.1 0.069 12.5 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|385804915|ref|YP_005841315.1| - 0.0043 16.7 0.1 0.01 15.4 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|385804915|ref|YP_005841315.1| - 0.0066 16.5 0.0 0.079 13.0 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator HTH_28 PF13518.1 gi|385804915|ref|YP_005841315.1| - 0.0071 16.3 0.1 0.028 14.4 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|385804915|ref|YP_005841315.1| - 0.019 15.1 0.2 0.041 14.0 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn helix HTH_24 PF13412.1 gi|385804915|ref|YP_005841315.1| - 0.025 13.9 0.0 0.038 13.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_30 PF13556.1 gi|385804915|ref|YP_005841315.1| - 0.041 13.4 0.0 0.094 12.3 0.0 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain RPA_C PF08784.6 gi|385804915|ref|YP_005841315.1| - 0.085 13.2 0.0 0.2 12.0 0.0 1.6 2 0 0 2 2 2 0 Replication protein A C terminal NTP_transf_2 PF01909.18 gi|385804917|ref|YP_005841317.1| - 6.6e-09 35.9 0.1 6.6e-09 35.9 0.1 1.6 2 0 0 2 2 2 1 Nucleotidyltransferase domain HTH_11 PF08279.7 gi|385804917|ref|YP_005841317.1| - 9.9e-07 28.3 0.8 1.5e-06 27.7 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.5 gi|385804917|ref|YP_005841317.1| - 0.0011 18.5 0.0 0.0025 17.3 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|385804917|ref|YP_005841317.1| - 0.0095 15.6 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|385804917|ref|YP_005841317.1| - 0.034 13.5 0.0 0.077 12.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|385804917|ref|YP_005841317.1| - 0.038 13.6 0.1 0.088 12.4 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_41 PF14502.1 gi|385804917|ref|YP_005841317.1| - 0.067 12.8 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF294 PF03445.8 gi|385804917|ref|YP_005841317.1| - 0.082 12.5 0.1 0.13 11.8 0.1 1.3 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HTH_23 PF13384.1 gi|385804917|ref|YP_005841317.1| - 0.12 12.0 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain SWIM PF04434.12 gi|385804920|ref|YP_005841320.1| - 0.0035 16.7 1.0 0.009 15.4 0.7 1.8 1 1 0 1 1 1 1 SWIM zinc finger Antitoxin-MazE PF04014.13 gi|385804921|ref|YP_005841321.1| - 0.0065 16.1 0.3 0.01 15.5 0.2 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF3714 PF12508.3 gi|385804921|ref|YP_005841321.1| - 0.1 12.0 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3714) Oligomerisation PF02410.10 gi|385804921|ref|YP_005841321.1| - 0.12 12.3 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Oligomerisation domain zf-HC2 PF13490.1 gi|385804921|ref|YP_005841321.1| - 0.17 11.8 0.2 0.32 10.9 0.2 1.4 1 0 0 1 1 1 0 Putative zinc-finger ABC_tran PF00005.22 gi|385804925|ref|YP_005841325.1| - 3.1e-35 121.4 0.0 4.6e-35 120.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385804925|ref|YP_005841325.1| - 1.9e-10 41.2 0.1 6e-05 23.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|385804925|ref|YP_005841325.1| - 0.00015 21.2 0.0 0.0004 19.8 0.0 1.7 2 0 0 2 2 1 1 P-loop containing region of AAA domain MobB PF03205.9 gi|385804925|ref|YP_005841325.1| - 0.00022 20.9 0.0 0.00036 20.2 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|385804925|ref|YP_005841325.1| - 0.00054 19.7 0.0 0.00082 19.1 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_23 PF13476.1 gi|385804925|ref|YP_005841325.1| - 0.00063 20.1 0.5 0.00091 19.5 0.4 1.6 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|385804925|ref|YP_005841325.1| - 0.0017 17.2 0.6 0.003 16.4 0.1 1.6 2 0 0 2 2 2 1 NB-ARC domain DUF258 PF03193.11 gi|385804925|ref|YP_005841325.1| - 0.0019 17.4 0.1 0.0033 16.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 NACHT PF05729.7 gi|385804925|ref|YP_005841325.1| - 0.0024 17.5 0.4 0.0042 16.7 0.3 1.4 1 0 0 1 1 1 1 NACHT domain AAA_10 PF12846.2 gi|385804925|ref|YP_005841325.1| - 0.0025 17.3 0.1 0.05 13.0 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain NTPase_1 PF03266.10 gi|385804925|ref|YP_005841325.1| - 0.0026 17.4 0.3 0.0082 15.8 0.1 1.8 2 0 0 2 2 2 1 NTPase AAA_22 PF13401.1 gi|385804925|ref|YP_005841325.1| - 0.0029 17.7 0.4 0.025 14.7 0.3 2.1 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|385804925|ref|YP_005841325.1| - 0.0031 17.4 0.2 0.0079 16.1 0.1 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase SMC_N PF02463.14 gi|385804925|ref|YP_005841325.1| - 0.0068 15.6 1.0 0.044 13.0 0.7 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|385804925|ref|YP_005841325.1| - 0.0072 15.7 0.1 0.017 14.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|385804925|ref|YP_005841325.1| - 0.0076 15.8 0.2 0.021 14.3 0.1 1.7 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|385804925|ref|YP_005841325.1| - 0.01 16.0 0.1 0.028 14.6 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|385804925|ref|YP_005841325.1| - 0.01 14.9 0.0 0.014 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Miro PF08477.8 gi|385804925|ref|YP_005841325.1| - 0.013 15.9 0.0 0.026 14.9 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein AAA_14 PF13173.1 gi|385804925|ref|YP_005841325.1| - 0.015 15.2 0.0 0.028 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|385804925|ref|YP_005841325.1| - 0.015 14.7 0.0 0.016 14.7 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_16 PF13191.1 gi|385804925|ref|YP_005841325.1| - 0.016 15.2 0.0 0.025 14.5 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain ArgK PF03308.11 gi|385804925|ref|YP_005841325.1| - 0.017 13.9 0.2 0.027 13.2 0.1 1.2 1 0 0 1 1 1 0 ArgK protein AAA_18 PF13238.1 gi|385804925|ref|YP_005841325.1| - 0.019 15.2 0.1 0.085 13.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|385804925|ref|YP_005841325.1| - 0.023 14.1 0.5 0.043 13.2 0.1 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain T2SE PF00437.15 gi|385804925|ref|YP_005841325.1| - 0.026 13.4 0.1 0.04 12.8 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_17 PF13207.1 gi|385804925|ref|YP_005841325.1| - 0.038 14.7 0.0 0.073 13.8 0.0 1.6 2 0 0 2 2 1 0 AAA domain Mg_chelatase PF01078.16 gi|385804925|ref|YP_005841325.1| - 0.048 12.8 0.1 8.1 5.5 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|385804925|ref|YP_005841325.1| - 0.077 12.7 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) UPF0079 PF02367.12 gi|385804925|ref|YP_005841325.1| - 0.095 12.3 0.2 0.17 11.4 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ABC_ATPase PF09818.4 gi|385804925|ref|YP_005841325.1| - 0.11 11.0 0.5 1.5 7.2 0.2 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_24 PF13479.1 gi|385804925|ref|YP_005841325.1| - 0.11 12.0 0.6 0.23 10.9 0.1 1.7 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.3 gi|385804925|ref|YP_005841325.1| - 0.15 9.3 0.3 0.23 8.7 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC_tran PF00005.22 gi|385804926|ref|YP_005841326.1| - 1.9e-31 109.2 0.0 2.9e-31 108.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385804926|ref|YP_005841326.1| - 9.3e-09 35.6 0.3 0.00013 22.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|385804926|ref|YP_005841326.1| - 8.8e-06 25.1 0.6 5.5e-05 22.4 0.4 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|385804926|ref|YP_005841326.1| - 0.00025 20.5 0.0 0.00051 19.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|385804926|ref|YP_005841326.1| - 0.00057 20.2 0.1 0.00083 19.7 0.1 1.4 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|385804926|ref|YP_005841326.1| - 0.0021 17.2 0.0 0.0033 16.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|385804926|ref|YP_005841326.1| - 0.0065 16.4 0.3 0.017 15.1 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|385804926|ref|YP_005841326.1| - 0.033 14.0 0.0 0.13 12.1 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|385804926|ref|YP_005841326.1| - 0.039 14.1 0.2 0.1 12.7 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|385804926|ref|YP_005841326.1| - 0.079 12.3 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain AAA_30 PF13604.1 gi|385804926|ref|YP_005841326.1| - 0.088 12.3 0.1 0.2 11.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|385804926|ref|YP_005841326.1| - 0.094 11.7 0.0 0.31 10.0 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_13 PF13166.1 gi|385804926|ref|YP_005841326.1| - 0.13 10.7 0.0 0.68 8.3 0.0 2.0 1 1 1 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|385804926|ref|YP_005841326.1| - 0.14 11.8 0.3 0.68 9.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|385804926|ref|YP_005841326.1| - 0.15 12.9 0.1 0.37 11.6 0.1 1.8 1 1 0 1 1 1 0 AAA domain BPD_transp_2 PF02653.11 gi|385804927|ref|YP_005841327.1| - 8.3e-34 116.7 40.6 1.2e-33 116.2 28.2 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|385804928|ref|YP_005841328.1| - 7.5e-39 133.2 39.7 8.9e-39 133.0 27.5 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.1 gi|385804929|ref|YP_005841329.1| - 1.4e-83 281.1 0.1 1.6e-83 280.8 0.1 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|385804929|ref|YP_005841329.1| - 2.8e-70 236.8 0.1 3.4e-70 236.6 0.1 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.4 gi|385804929|ref|YP_005841329.1| - 0.37 10.8 5.9 0.87 9.7 4.1 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence NikR_C PF08753.6 gi|385804930|ref|YP_005841330.1| - 3.3e-23 81.3 2.1 4.5e-23 80.9 1.5 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|385804930|ref|YP_005841330.1| - 1.9e-05 24.3 0.0 3.3e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|385804930|ref|YP_005841330.1| - 0.017 15.2 0.0 0.047 13.8 0.0 1.8 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0156) CbiM PF01891.11 gi|385804931|ref|YP_005841331.1| - 2.4e-59 200.3 22.7 2.7e-59 200.2 15.7 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF3816 PF12822.2 gi|385804931|ref|YP_005841331.1| - 0.025 14.4 20.4 0.045 13.6 14.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) PDGLE PF13190.1 gi|385804932|ref|YP_005841332.1| - 1.5e-12 47.0 2.3 1.9e-12 46.6 1.6 1.2 1 0 0 1 1 1 1 PDGLE domain CbiQ PF02361.11 gi|385804933|ref|YP_005841333.1| - 5.8e-27 94.7 12.3 8.1e-27 94.2 8.6 1.1 1 0 0 1 1 1 1 Cobalt transport protein Cytochrom_B_N PF00033.14 gi|385804933|ref|YP_005841333.1| - 0.00085 18.7 2.2 0.0023 17.2 1.5 1.8 1 1 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|385804933|ref|YP_005841333.1| - 0.031 13.6 5.3 0.4 10.0 3.7 2.3 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 ABC_tran PF00005.22 gi|385804934|ref|YP_005841334.1| - 5.2e-28 98.0 0.0 7e-28 97.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385804934|ref|YP_005841334.1| - 2.5e-08 34.2 0.8 0.0012 18.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|385804934|ref|YP_005841334.1| - 1.1e-05 24.7 0.1 0.1 11.8 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|385804934|ref|YP_005841334.1| - 0.00023 21.0 0.1 0.0016 18.2 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|385804934|ref|YP_005841334.1| - 0.00041 19.8 0.0 0.0011 18.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|385804934|ref|YP_005841334.1| - 0.017 15.9 0.4 1 10.1 0.2 2.3 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|385804934|ref|YP_005841334.1| - 0.041 12.7 0.4 0.28 10.0 0.1 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.13 gi|385804934|ref|YP_005841334.1| - 0.081 12.3 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family Urease_beta PF00699.15 gi|385804935|ref|YP_005841335.1| - 5.7e-44 148.0 0.0 6.9e-44 147.7 0.0 1.1 1 0 0 1 1 1 1 Urease beta subunit ROKNT PF08067.6 gi|385804935|ref|YP_005841335.1| - 0.025 14.3 2.0 0.031 14.1 0.2 1.9 2 0 0 2 2 2 0 ROKNT (NUC014) domain Amidohydro_1 PF01979.15 gi|385804936|ref|YP_005841336.1| - 9.2e-62 209.6 2.9 1.5e-61 208.8 2.0 1.3 1 0 0 1 1 1 1 Amidohydrolase family Urease_alpha PF00449.15 gi|385804936|ref|YP_005841336.1| - 2.7e-48 163.0 2.2 5.6e-48 162.0 1.5 1.6 1 0 0 1 1 1 1 Urease alpha-subunit, N-terminal domain Amidohydro_5 PF13594.1 gi|385804936|ref|YP_005841336.1| - 4.6e-07 29.5 2.0 1.2e-06 28.2 1.4 1.7 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|385804936|ref|YP_005841336.1| - 6.8e-07 29.5 1.0 0.0051 16.8 1.1 2.4 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_3 PF07969.6 gi|385804936|ref|YP_005841336.1| - 1.8e-06 27.4 1.3 1.8e-06 27.4 0.9 2.5 1 1 1 2 2 2 1 Amidohydrolase family Pyocin_S PF06958.7 gi|385804936|ref|YP_005841336.1| - 0.021 15.1 0.0 0.038 14.3 0.0 1.4 1 0 0 1 1 1 0 S-type Pyocin Urease_gamma PF00547.13 gi|385804937|ref|YP_005841337.1| - 3.5e-43 145.6 0.1 4e-43 145.4 0.0 1.0 1 0 0 1 1 1 1 Urease, gamma subunit DUF732 PF05305.9 gi|385804937|ref|YP_005841337.1| - 0.05 13.6 0.0 0.064 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF732) cobW PF02492.14 gi|385804938|ref|YP_005841338.1| - 2.3e-36 124.8 0.0 2.7e-36 124.6 0.0 1.0 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|385804938|ref|YP_005841338.1| - 1.9e-11 43.2 0.2 7.2e-06 24.9 0.0 2.1 2 0 0 2 2 2 2 ArgK protein MobB PF03205.9 gi|385804938|ref|YP_005841338.1| - 0.0054 16.4 0.0 0.013 15.2 0.0 1.7 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|385804938|ref|YP_005841338.1| - 0.018 14.7 0.0 0.026 14.2 0.0 1.3 1 0 0 1 1 1 0 NTPase AAA_18 PF13238.1 gi|385804938|ref|YP_005841338.1| - 0.018 15.3 0.0 0.036 14.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|385804938|ref|YP_005841338.1| - 0.022 15.5 0.0 0.044 14.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|385804938|ref|YP_005841338.1| - 0.024 14.6 0.0 0.031 14.2 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain GTP_EFTU PF00009.22 gi|385804938|ref|YP_005841338.1| - 0.029 13.8 0.0 7.2 6.0 0.0 2.5 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain SRP54 PF00448.17 gi|385804938|ref|YP_005841338.1| - 0.037 13.4 0.0 0.059 12.8 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain LpxK PF02606.9 gi|385804938|ref|YP_005841338.1| - 0.038 12.9 0.0 0.11 11.3 0.0 1.6 1 1 1 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase NACHT PF05729.7 gi|385804938|ref|YP_005841338.1| - 0.04 13.5 0.0 0.21 11.2 0.0 1.9 2 0 0 2 2 2 0 NACHT domain ATP_bind_1 PF03029.12 gi|385804938|ref|YP_005841338.1| - 0.066 12.7 0.0 0.24 10.9 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Miro PF08477.8 gi|385804938|ref|YP_005841338.1| - 0.067 13.6 0.0 0.38 11.2 0.0 2.0 2 0 0 2 2 2 0 Miro-like protein UPF0079 PF02367.12 gi|385804938|ref|YP_005841338.1| - 0.069 12.7 0.1 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Arch_ATPase PF01637.13 gi|385804938|ref|YP_005841338.1| - 0.069 12.8 0.0 0.086 12.5 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_10 PF12846.2 gi|385804938|ref|YP_005841338.1| - 0.079 12.3 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_PrkA PF08298.6 gi|385804938|ref|YP_005841338.1| - 0.15 10.6 0.0 0.26 9.9 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain UreD PF01774.12 gi|385804939|ref|YP_005841339.1| - 1.1e-46 158.9 0.5 1.3e-46 158.6 0.3 1.1 1 0 0 1 1 1 1 UreD urease accessory protein UreE_N PF02814.10 gi|385804940|ref|YP_005841340.1| - 1.8e-11 43.4 1.1 3.9e-11 42.3 0.8 1.5 1 0 0 1 1 1 1 UreE urease accessory protein, N-terminal domain UreE_C PF05194.7 gi|385804940|ref|YP_005841340.1| - 0.00046 20.2 21.6 0.0074 16.3 14.9 2.6 1 1 0 1 1 1 1 UreE urease accessory protein, C-terminal domain DUF2796 PF10986.3 gi|385804940|ref|YP_005841340.1| - 0.011 15.6 16.5 0.018 14.9 11.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2796) Zip PF02535.17 gi|385804940|ref|YP_005841340.1| - 2.7 6.9 10.9 3.7 6.4 7.6 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter SelP_N PF04592.9 gi|385804940|ref|YP_005841340.1| - 4.5 6.5 13.9 7.8 5.8 9.7 1.4 1 0 0 1 1 1 0 Selenoprotein P, N terminal region UreF PF01730.11 gi|385804941|ref|YP_005841341.1| - 3.1e-33 114.9 0.0 3.9e-33 114.6 0.0 1.1 1 0 0 1 1 1 1 UreF AA_permease_2 PF13520.1 gi|385804942|ref|YP_005841342.1| - 1.9e-43 148.6 46.9 2.4e-43 148.2 32.5 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|385804942|ref|YP_005841342.1| - 2.2e-40 138.4 46.7 2.8e-40 138.1 32.4 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|385804942|ref|YP_005841342.1| - 6.1e-08 32.9 0.6 1.7e-07 31.5 0.3 1.9 2 0 0 2 2 2 1 Universal stress protein family Phage_HK97_TLTM PF06120.6 gi|385804942|ref|YP_005841342.1| - 0.51 9.6 1.3 5.6 6.2 0.0 2.3 2 0 0 2 2 2 0 Tail length tape measure protein TrkA_N PF02254.13 gi|385804943|ref|YP_005841343.1| - 8.9e-14 51.4 0.2 1.2e-13 51.0 0.1 1.1 1 0 0 1 1 1 1 TrkA-N domain LMWPc PF01451.16 gi|385804945|ref|YP_005841345.1| - 2.6e-26 92.5 0.0 3e-26 92.3 0.0 1.0 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase Cons_hypoth698 PF03601.9 gi|385804947|ref|YP_005841347.1| - 2.1e-65 220.3 17.8 2.5e-65 220.1 12.4 1.0 1 0 0 1 1 1 1 Conserved hypothetical protein 698 Metallophos_2 PF12850.2 gi|385804948|ref|YP_005841348.1| - 4.2e-22 78.6 0.6 5.6e-22 78.2 0.4 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|385804948|ref|YP_005841348.1| - 3e-05 23.5 0.2 0.01 15.2 0.0 2.4 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase tRNA_lig_kinase PF08303.6 gi|385804948|ref|YP_005841348.1| - 0.033 14.0 0.0 0.045 13.6 0.0 1.1 1 0 0 1 1 1 0 tRNA ligase kinase domain Peptidase_M29 PF02073.10 gi|385804949|ref|YP_005841349.1| - 5.1e-110 367.9 0.7 5.7e-110 367.7 0.5 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) AsnC_trans_reg PF01037.16 gi|385804950|ref|YP_005841350.1| - 2.7e-11 43.0 0.0 4.9e-11 42.1 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|385804950|ref|YP_005841350.1| - 8.3e-10 37.9 0.1 2.3e-09 36.5 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|385804950|ref|YP_005841350.1| - 1.4e-08 34.1 0.3 2.5e-08 33.2 0.2 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.15 gi|385804950|ref|YP_005841350.1| - 4.9e-07 29.3 0.3 9.3e-07 28.4 0.1 1.6 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|385804950|ref|YP_005841350.1| - 6.7e-06 25.8 0.2 1.3e-05 24.9 0.1 1.5 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|385804950|ref|YP_005841350.1| - 1.3e-05 24.6 0.1 2.8e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|385804950|ref|YP_005841350.1| - 6.3e-05 22.5 0.2 0.00019 21.1 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.7 gi|385804950|ref|YP_005841350.1| - 0.00011 21.7 0.0 0.00025 20.5 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GntR PF00392.16 gi|385804950|ref|YP_005841350.1| - 0.00018 20.8 0.2 0.0005 19.4 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.7 gi|385804950|ref|YP_005841350.1| - 0.00036 20.0 0.2 0.0011 18.4 0.0 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.1 gi|385804950|ref|YP_005841350.1| - 0.00075 19.4 0.0 0.0019 18.1 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|385804950|ref|YP_005841350.1| - 0.0019 17.7 0.1 0.0037 16.8 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|385804950|ref|YP_005841350.1| - 0.0035 16.9 0.1 0.013 15.1 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_Tnp_ISL3 PF13542.1 gi|385804950|ref|YP_005841350.1| - 0.0039 16.3 0.3 0.034 13.3 0.0 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_38 PF13936.1 gi|385804950|ref|YP_005841350.1| - 0.0043 16.5 0.0 0.0087 15.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|385804950|ref|YP_005841350.1| - 0.006 16.2 0.0 0.048 13.3 0.0 2.1 2 0 0 2 2 2 1 MarR family Mga PF05043.8 gi|385804950|ref|YP_005841350.1| - 0.0078 16.4 0.0 0.023 14.9 0.0 1.7 2 0 0 2 2 2 1 Mga helix-turn-helix domain HTH_23 PF13384.1 gi|385804950|ref|YP_005841350.1| - 0.015 14.9 0.0 0.025 14.2 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|385804950|ref|YP_005841350.1| - 0.025 14.5 0.2 0.08 12.9 0.0 1.9 2 1 1 3 3 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_41 PF14502.1 gi|385804950|ref|YP_005841350.1| - 0.037 13.6 0.0 0.1 12.2 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_1 PF00126.22 gi|385804950|ref|YP_005841350.1| - 0.047 13.4 0.0 0.097 12.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_34 PF13601.1 gi|385804950|ref|YP_005841350.1| - 0.1 12.6 0.2 0.29 11.1 0.0 1.8 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_7 PF02796.10 gi|385804950|ref|YP_005841350.1| - 0.11 12.3 0.0 0.37 10.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Gln-synt_C PF00120.19 gi|385804951|ref|YP_005841351.1| - 3.2e-101 337.8 0.1 4.1e-101 337.4 0.1 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|385804951|ref|YP_005841351.1| - 1.4e-30 104.7 0.0 2.7e-30 103.7 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain PAP2 PF01569.16 gi|385804952|ref|YP_005841352.1| - 5.7e-17 61.6 12.6 5.7e-17 61.6 8.8 2.7 2 2 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.1 gi|385804952|ref|YP_005841352.1| - 0.00032 20.8 2.2 0.00032 20.8 1.5 2.9 3 1 0 3 3 3 1 PAP2 superfamily C-terminal PAP2_3 PF14378.1 gi|385804952|ref|YP_005841352.1| - 0.0012 18.3 10.6 0.0012 18.3 7.3 2.5 2 1 0 2 2 2 1 PAP2 superfamily DUF641 PF04859.7 gi|385804953|ref|YP_005841353.1| - 0.076 12.7 0.1 0.12 12.1 0.1 1.3 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) DUF4220 PF13968.1 gi|385804953|ref|YP_005841353.1| - 0.23 10.5 3.1 0.11 11.6 0.2 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4220) DUF812 PF05667.6 gi|385804953|ref|YP_005841353.1| - 0.54 8.6 4.6 0.66 8.4 3.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF812) Pex14_N PF04695.8 gi|385804953|ref|YP_005841353.1| - 1.2 9.2 3.8 2.7 8.0 2.6 1.7 1 1 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region Macoilin PF09726.4 gi|385804953|ref|YP_005841353.1| - 1.2 7.3 5.1 1.4 7.1 3.1 1.3 2 0 0 2 2 2 0 Transmembrane protein IncA PF04156.9 gi|385804953|ref|YP_005841353.1| - 2.8 7.4 9.1 4.9 6.7 0.2 2.2 2 0 0 2 2 2 0 IncA protein TRM PF02005.11 gi|385804954|ref|YP_005841354.1| - 2.2e-90 303.3 0.0 2.8e-90 302.9 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase PrmA PF06325.8 gi|385804954|ref|YP_005841354.1| - 6e-05 22.3 0.0 8.1e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_26 PF13659.1 gi|385804954|ref|YP_005841354.1| - 9.3e-05 22.4 0.6 0.00021 21.2 0.4 2.0 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|385804954|ref|YP_005841354.1| - 0.00013 21.4 0.1 0.00022 20.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Zn-ribbon_8 PF09723.5 gi|385804954|ref|YP_005841354.1| - 0.0013 18.5 1.5 0.0027 17.6 1.0 1.5 1 0 0 1 1 1 1 Zinc ribbon domain Methyltransf_31 PF13847.1 gi|385804954|ref|YP_005841354.1| - 0.0028 17.2 0.0 0.0045 16.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|385804954|ref|YP_005841354.1| - 0.038 13.3 0.0 0.059 12.7 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_18 PF12847.2 gi|385804954|ref|YP_005841354.1| - 0.045 14.3 0.0 0.087 13.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain SWIM PF04434.12 gi|385804955|ref|YP_005841355.1| - 0.34 10.4 4.6 4.9 6.7 3.2 2.2 1 1 0 1 1 1 0 SWIM zinc finger ADH_N PF08240.7 gi|385804956|ref|YP_005841356.1| - 1.4e-28 98.8 0.7 1.4e-28 98.8 0.5 1.9 3 0 0 3 3 3 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|385804956|ref|YP_005841356.1| - 2.4e-20 72.4 0.3 4.7e-20 71.4 0.1 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|385804956|ref|YP_005841356.1| - 1.1e-07 32.8 0.8 2.3e-07 31.7 0.6 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase BBS2_N PF14781.1 gi|385804957|ref|YP_005841357.1| - 0.074 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 2, N-terminal MF_alpha_N PF05436.6 gi|385804957|ref|YP_005841357.1| - 0.09 12.4 0.2 0.28 10.8 0.1 1.8 1 0 0 1 1 1 0 Mating factor alpha precursor N-terminus PQQ_3 PF13570.1 gi|385804957|ref|YP_005841357.1| - 9.5 6.6 11.8 8.3 6.8 0.0 4.4 4 1 0 5 5 5 0 PQQ-like domain Pribosyltran_N PF13793.1 gi|385804958|ref|YP_005841358.1| - 2.9e-22 78.6 0.0 4.8e-20 71.4 0.0 2.4 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|385804958|ref|YP_005841358.1| - 2.1e-11 43.6 1.2 1.5e-09 37.6 0.1 2.8 2 1 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|385804958|ref|YP_005841358.1| - 8.8e-07 28.8 2.0 8.8e-07 28.8 1.4 1.6 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|385804958|ref|YP_005841358.1| - 0.00016 20.9 0.1 0.00028 20.1 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|385804958|ref|YP_005841358.1| - 0.0025 17.1 0.4 1.3 8.3 0.3 2.4 1 1 1 2 2 2 2 Phosphoribosyl transferase HIT PF01230.18 gi|385804959|ref|YP_005841359.1| - 2.3e-25 88.9 0.0 2.7e-25 88.7 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|385804959|ref|YP_005841359.1| - 2.1e-14 53.7 0.0 2.6e-14 53.4 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|385804959|ref|YP_005841359.1| - 0.014 15.0 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 AAA_31 PF13614.1 gi|385804960|ref|YP_005841360.1| - 6.2e-09 35.9 0.0 9.2e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|385804960|ref|YP_005841360.1| - 1.3e-08 34.4 0.1 2.1e-08 33.7 0.1 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|385804960|ref|YP_005841360.1| - 1.9e-05 23.8 1.2 0.012 14.6 0.1 2.2 2 0 0 2 2 2 2 ATPase MipZ YhjQ PF06564.7 gi|385804960|ref|YP_005841360.1| - 0.0025 17.2 2.1 0.06 12.7 0.0 2.1 2 0 0 2 2 2 1 YhjQ protein Glyco_transf_4 PF13439.1 gi|385804960|ref|YP_005841360.1| - 0.047 13.4 0.1 0.3 10.7 0.0 2.0 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Hydrolase_4 PF12146.3 gi|385804960|ref|YP_005841360.1| - 0.082 12.7 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Putative lysophospholipase TFIIB PF00382.14 gi|385804962|ref|YP_005841362.1| - 4.7e-36 122.4 0.5 5.1e-19 67.8 0.3 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|385804962|ref|YP_005841362.1| - 2.4e-11 42.7 2.9 3.9e-11 42.0 2.0 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.2 gi|385804962|ref|YP_005841362.1| - 0.019 14.7 1.3 0.04 13.7 0.9 1.5 1 0 0 1 1 1 0 Double zinc ribbon Cyclin_C PF02984.14 gi|385804962|ref|YP_005841362.1| - 0.023 14.6 0.5 0.72 9.7 0.0 2.2 2 0 0 2 2 2 0 Cyclin, C-terminal domain zf-ribbon_3 PF13248.1 gi|385804962|ref|YP_005841362.1| - 0.11 11.7 2.9 0.18 11.0 2.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|385804962|ref|YP_005841362.1| - 0.12 11.9 0.6 2.5 7.6 0.0 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.6 gi|385804962|ref|YP_005841362.1| - 0.21 11.2 1.5 0.28 10.8 0.4 1.7 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|385804962|ref|YP_005841362.1| - 1.7 8.6 4.0 0.87 9.5 0.3 2.2 1 1 1 2 2 2 0 Zinc ribbon domain CbiA PF01656.18 gi|385804964|ref|YP_005841364.1| - 2e-15 56.7 0.1 2.8e-15 56.2 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|385804964|ref|YP_005841364.1| - 1.8e-07 31.1 0.0 2.7e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|385804964|ref|YP_005841364.1| - 9.3e-05 21.6 0.3 0.00036 19.6 0.2 1.8 1 1 0 1 1 1 1 ATPase MipZ AAA_17 PF13207.1 gi|385804964|ref|YP_005841364.1| - 0.00015 22.5 0.1 0.00045 21.0 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|385804964|ref|YP_005841364.1| - 0.0022 17.8 0.0 0.0049 16.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain ParA PF10609.4 gi|385804964|ref|YP_005841364.1| - 0.0024 17.7 1.2 0.0039 17.0 0.0 1.9 2 0 0 2 2 2 1 ParA/MinD ATPase like YhjQ PF06564.7 gi|385804964|ref|YP_005841364.1| - 0.0029 17.0 0.1 0.0061 15.9 0.1 1.6 1 1 0 1 1 1 1 YhjQ protein Fer4_NifH PF00142.13 gi|385804964|ref|YP_005841364.1| - 0.0049 16.0 0.2 0.37 9.9 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|385804964|ref|YP_005841364.1| - 0.023 14.1 2.0 0.065 12.6 1.4 1.9 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|385804964|ref|YP_005841364.1| - 0.12 11.9 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.10 gi|385804964|ref|YP_005841364.1| - 0.15 11.0 0.7 0.29 10.1 0.5 1.4 1 0 0 1 1 1 0 Anion-transporting ATPase Ferritin PF00210.19 gi|385804966|ref|YP_005841366.1| - 0.065 12.9 0.3 0.12 12.1 0.2 1.3 1 0 0 1 1 1 0 Ferritin-like domain DNA_pol3_alpha PF07733.7 gi|385804966|ref|YP_005841366.1| - 0.067 11.6 0.5 0.091 11.1 0.4 1.1 1 0 0 1 1 1 0 Bacterial DNA polymerase III alpha subunit LURAP PF14854.1 gi|385804966|ref|YP_005841366.1| - 0.098 12.3 0.1 0.21 11.3 0.1 1.6 1 0 0 1 1 1 0 Leucine rich adaptor protein HTH_25 PF13413.1 gi|385804968|ref|YP_005841368.1| - 0.04 13.5 0.1 0.38 10.4 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain MCM PF00493.18 gi|385804970|ref|YP_005841370.1| - 3.9e-100 334.8 5.5 3.2e-58 197.0 0.0 5.2 5 0 0 5 5 5 4 MCM2/3/5 family Intein_splicing PF14890.1 gi|385804970|ref|YP_005841370.1| - 1.2e-22 80.2 3.0 4.4e-06 25.8 0.1 7.4 8 0 0 8 8 8 6 Intein splicing domain MCM_N PF14551.1 gi|385804970|ref|YP_005841370.1| - 2.8e-14 53.6 0.3 1.2e-13 51.6 0.2 2.1 1 0 0 1 1 1 1 MCM N-terminal domain LAGLIDADG_3 PF14528.1 gi|385804970|ref|YP_005841370.1| - 2.4e-11 43.7 0.0 5.7e-08 32.8 0.0 2.8 2 0 0 2 2 2 2 LAGLIDADG-like domain Hint PF01079.15 gi|385804970|ref|YP_005841370.1| - 3.7e-08 32.8 0.2 0.00071 18.8 0.0 4.0 4 0 0 4 4 4 2 Hint module Hom_end PF05204.9 gi|385804970|ref|YP_005841370.1| - 0.0032 17.4 5.9 0.3 11.0 0.0 3.5 4 0 0 4 4 4 2 Homing endonuclease BioY PF02632.9 gi|385804972|ref|YP_005841372.1| - 7.5e-38 129.5 16.9 1.3e-37 128.7 11.7 1.3 1 0 0 1 1 1 1 BioY family ABC_tran PF00005.22 gi|385804973|ref|YP_005841373.1| - 4.6e-29 101.4 0.0 1e-28 100.3 0.0 1.5 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|385804973|ref|YP_005841373.1| - 1.3e-08 35.1 0.0 0.0014 18.6 0.1 2.2 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|385804973|ref|YP_005841373.1| - 2.3e-07 30.2 0.0 2.8e-06 26.7 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|385804973|ref|YP_005841373.1| - 4.2e-05 23.6 0.0 7.8e-05 22.7 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|385804973|ref|YP_005841373.1| - 0.00039 19.5 0.0 0.32 10.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|385804973|ref|YP_005841373.1| - 0.00055 19.4 0.1 0.0011 18.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.1 gi|385804973|ref|YP_005841373.1| - 0.0015 18.5 0.0 0.0027 17.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|385804973|ref|YP_005841373.1| - 0.0015 17.9 0.3 1 8.7 0.1 2.2 2 0 0 2 2 2 2 AAA-like domain SbcCD_C PF13558.1 gi|385804973|ref|YP_005841373.1| - 0.0027 17.5 0.3 0.024 14.5 0.2 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|385804973|ref|YP_005841373.1| - 0.0033 17.7 0.1 0.0045 17.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|385804973|ref|YP_005841373.1| - 0.0036 15.8 0.0 0.011 14.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|385804973|ref|YP_005841373.1| - 0.0092 15.6 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_22 PF13401.1 gi|385804973|ref|YP_005841373.1| - 0.011 15.8 0.1 0.035 14.2 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|385804973|ref|YP_005841373.1| - 0.015 14.9 0.1 0.036 13.7 0.1 1.7 1 0 0 1 1 1 0 Part of AAA domain Miro PF08477.8 gi|385804973|ref|YP_005841373.1| - 0.019 15.4 0.0 0.031 14.7 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein DUF258 PF03193.11 gi|385804973|ref|YP_005841373.1| - 0.019 14.1 0.0 0.029 13.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Etmic-2 PF06670.6 gi|385804973|ref|YP_005841373.1| - 0.022 13.5 0.1 0.036 12.8 0.0 1.3 1 0 0 1 1 1 0 Microneme protein Etmic-2 NB-ARC PF00931.17 gi|385804973|ref|YP_005841373.1| - 0.025 13.4 0.0 0.037 12.8 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain MobB PF03205.9 gi|385804973|ref|YP_005841373.1| - 0.027 14.1 0.1 0.094 12.4 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|385804973|ref|YP_005841373.1| - 0.032 13.8 0.0 0.052 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|385804973|ref|YP_005841373.1| - 0.034 13.8 0.0 0.099 12.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) T2SE PF00437.15 gi|385804973|ref|YP_005841373.1| - 0.046 12.6 0.2 0.57 9.0 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_14 PF13173.1 gi|385804973|ref|YP_005841373.1| - 0.05 13.4 0.0 0.088 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|385804973|ref|YP_005841373.1| - 0.054 12.9 0.2 0.11 11.9 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|385804973|ref|YP_005841373.1| - 0.061 14.1 0.2 0.2 12.4 0.1 1.8 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|385804973|ref|YP_005841373.1| - 0.063 13.1 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|385804973|ref|YP_005841373.1| - 0.069 12.5 0.1 0.28 10.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|385804973|ref|YP_005841373.1| - 0.069 12.2 0.0 0.099 11.7 0.0 1.3 1 0 0 1 1 1 0 KaiC FtsK_SpoIIIE PF01580.13 gi|385804973|ref|YP_005841373.1| - 0.094 12.1 0.0 0.19 11.1 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family UPF0079 PF02367.12 gi|385804973|ref|YP_005841373.1| - 0.094 12.3 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 PduV-EutP PF10662.4 gi|385804973|ref|YP_005841373.1| - 0.13 11.7 0.0 0.33 10.4 0.0 1.7 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation G-alpha PF00503.15 gi|385804973|ref|YP_005841373.1| - 0.14 10.7 0.0 0.2 10.2 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit DUF3584 PF12128.3 gi|385804973|ref|YP_005841373.1| - 0.2 8.9 0.0 0.27 8.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) CbiQ PF02361.11 gi|385804974|ref|YP_005841374.1| - 7e-13 48.6 11.7 7e-13 48.6 8.1 1.7 2 1 0 2 2 2 1 Cobalt transport protein Fer4_7 PF12838.2 gi|385804975|ref|YP_005841375.1| - 2.5e-13 50.1 21.0 1.1e-08 35.3 4.0 1.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|385804975|ref|YP_005841375.1| - 1.1e-12 46.9 12.5 7.3e-07 28.5 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|385804975|ref|YP_005841375.1| - 2e-10 40.7 4.8 2.9e-10 40.2 3.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|385804975|ref|YP_005841375.1| - 4.1e-09 35.9 15.5 3.2e-05 23.5 3.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|385804975|ref|YP_005841375.1| - 3.4e-08 33.1 18.3 2e-06 27.5 5.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|385804975|ref|YP_005841375.1| - 8.9e-08 31.8 7.0 1.4e-07 31.2 4.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|385804975|ref|YP_005841375.1| - 9.1e-08 31.8 7.5 0.00023 21.2 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|385804975|ref|YP_005841375.1| - 1.9e-07 30.6 10.1 0.0016 18.2 0.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|385804975|ref|YP_005841375.1| - 9.8e-07 28.7 9.8 6.4e-06 26.1 3.5 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|385804975|ref|YP_005841375.1| - 6.1e-06 26.8 5.9 0.00029 21.5 0.8 2.5 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|385804975|ref|YP_005841375.1| - 9.1e-06 26.0 4.0 0.0016 18.7 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|385804975|ref|YP_005841375.1| - 2.3e-05 24.6 1.0 0.1 12.9 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|385804975|ref|YP_005841375.1| - 3.3e-05 24.1 11.9 0.0047 17.3 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|385804975|ref|YP_005841375.1| - 0.0024 18.2 14.6 0.038 14.3 10.1 2.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|385804975|ref|YP_005841375.1| - 0.0072 16.8 14.0 0.4 11.2 9.7 2.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain GATase PF00117.23 gi|385804976|ref|YP_005841376.1| - 1.4e-24 86.6 0.0 1.9e-24 86.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|385804976|ref|YP_005841376.1| - 4.7e-10 39.2 0.1 2.7e-09 36.7 0.0 2.1 1 1 0 1 1 1 1 Peptidase C26 HTS PF04204.11 gi|385804976|ref|YP_005841376.1| - 0.00042 19.1 0.0 0.00091 18.0 0.0 1.5 1 1 1 2 2 2 1 Homoserine O-succinyltransferase Abhydrolase_6 PF12697.2 gi|385804977|ref|YP_005841377.1| - 4.7e-33 114.9 4.9 5.4e-33 114.7 3.4 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|385804977|ref|YP_005841377.1| - 4.4e-19 68.9 0.1 9.2e-19 67.9 0.0 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|385804977|ref|YP_005841377.1| - 9.1e-14 51.4 0.3 3e-13 49.7 0.2 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.5 gi|385804977|ref|YP_005841377.1| - 0.00057 19.7 0.0 0.001 18.9 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein Peptidase_S15 PF02129.13 gi|385804977|ref|YP_005841377.1| - 0.0012 18.2 0.3 0.5 9.7 0.0 2.1 2 0 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.3 gi|385804977|ref|YP_005841377.1| - 0.037 13.8 0.0 0.11 12.4 0.0 1.8 2 0 0 2 2 2 0 Putative lysophospholipase tRNA-synt_2c PF01411.14 gi|385804978|ref|YP_005841378.1| - 4.9e-108 361.8 0.0 6.4e-108 361.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|385804978|ref|YP_005841378.1| - 3.8e-13 49.0 1.7 8.1e-13 48.0 1.2 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|385804978|ref|YP_005841378.1| - 1.5e-10 40.5 3.7 3.5e-10 39.4 2.6 1.6 1 0 0 1 1 1 1 DHHA1 domain Rep_fac_C PF08542.6 gi|385804979|ref|YP_005841379.1| - 4.6e-21 74.5 0.0 1e-20 73.4 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.1 gi|385804979|ref|YP_005841379.1| - 1.9e-15 56.8 0.0 8.8e-14 51.4 0.0 2.4 2 0 0 2 2 2 1 DNA polymerase III, delta subunit AAA PF00004.24 gi|385804979|ref|YP_005841379.1| - 1.5e-09 38.1 3.4 1.7e-08 34.7 0.0 3.2 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta PF06144.8 gi|385804979|ref|YP_005841379.1| - 2e-06 27.4 0.0 4.6e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Rad17 PF03215.10 gi|385804979|ref|YP_005841379.1| - 6.5e-06 25.1 0.0 0.068 11.8 0.0 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|385804979|ref|YP_005841379.1| - 0.00063 18.8 0.1 0.024 13.6 0.0 2.9 3 0 0 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|385804979|ref|YP_005841379.1| - 0.002 18.1 0.0 3 7.7 0.0 2.6 2 0 0 2 2 2 2 AAA ATPase domain Intein_splicing PF14890.1 gi|385804979|ref|YP_005841379.1| - 0.0048 15.8 0.0 0.34 9.7 0.0 2.4 2 0 0 2 2 2 1 Intein splicing domain AAA_22 PF13401.1 gi|385804979|ref|YP_005841379.1| - 0.0077 16.3 0.1 0.14 12.2 0.0 2.7 2 0 0 2 2 2 1 AAA domain Acetyltransf_7 PF13508.1 gi|385804980|ref|YP_005841380.1| - 6.9e-08 32.5 0.0 1.2e-07 31.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|385804980|ref|YP_005841380.1| - 0.0019 18.1 0.0 0.0048 16.8 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family PGM_PMM_I PF02878.11 gi|385804981|ref|YP_005841381.1| - 3.2e-37 127.0 0.0 5.7e-37 126.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|385804981|ref|YP_005841381.1| - 2.6e-25 88.7 0.1 7.1e-25 87.3 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|385804981|ref|YP_005841381.1| - 1.9e-23 82.6 0.1 3.7e-23 81.7 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|385804981|ref|YP_005841381.1| - 5.1e-14 52.0 0.3 1.5e-13 50.5 0.0 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain GIY-YIG PF01541.19 gi|385804982|ref|YP_005841382.1| - 5e-14 52.4 1.5 6e-14 52.1 1.0 1.1 1 0 0 1 1 1 1 GIY-YIG catalytic domain T5orf172 PF10544.4 gi|385804982|ref|YP_005841382.1| - 0.0038 17.5 0.6 0.0054 17.0 0.4 1.3 1 1 0 1 1 1 1 T5orf172 domain MUG113 PF13455.1 gi|385804982|ref|YP_005841382.1| - 0.016 15.6 0.3 0.034 14.5 0.2 1.7 1 1 0 1 1 1 0 Meiotically up-regulated gene 113 Rho_N PF07498.7 gi|385804982|ref|YP_005841382.1| - 0.13 12.0 0.2 0.18 11.5 0.2 1.2 1 0 0 1 1 1 0 Rho termination factor, N-terminal domain SurE PF01975.12 gi|385804983|ref|YP_005841383.1| - 8.8e-45 152.4 0.0 1.1e-44 152.0 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE DZR PF12773.2 gi|385804984|ref|YP_005841384.1| - 0.0011 18.7 0.5 0.0013 18.5 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon PhnA_Zn_Ribbon PF08274.7 gi|385804984|ref|YP_005841384.1| - 0.002 17.8 0.2 0.0056 16.4 0.2 1.6 1 1 0 1 1 1 1 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.1 gi|385804984|ref|YP_005841384.1| - 0.0056 15.8 1.6 0.28 10.4 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain ATPase-cat_bd PF12156.3 gi|385804984|ref|YP_005841384.1| - 0.013 15.9 0.5 0.014 15.9 0.3 1.1 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase OrfB_Zn_ribbon PF07282.6 gi|385804984|ref|YP_005841384.1| - 0.014 14.9 0.6 0.019 14.5 0.4 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|385804984|ref|YP_005841384.1| - 0.017 14.8 0.3 0.022 14.4 0.2 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) TerY-C PF15616.1 gi|385804984|ref|YP_005841384.1| - 0.032 14.1 0.3 0.035 14.0 0.2 1.1 1 0 0 1 1 1 0 TerY-C metal binding domain zinc_ribbon_2 PF13240.1 gi|385804984|ref|YP_005841384.1| - 0.035 13.5 3.9 0.21 11.1 2.7 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Ogr_Delta PF04606.7 gi|385804984|ref|YP_005841384.1| - 0.057 13.0 2.5 1.3 8.6 0.4 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Zn_Tnp_IS1595 PF12760.2 gi|385804984|ref|YP_005841384.1| - 0.075 12.8 3.2 0.97 9.2 2.1 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|385804984|ref|YP_005841384.1| - 0.091 12.4 1.9 0.31 10.7 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Arc_trans_TRASH PF08394.5 gi|385804984|ref|YP_005841384.1| - 0.11 12.6 0.6 0.39 10.9 0.4 1.8 1 1 0 1 1 1 0 Archaeal TRASH domain zf-ISL3 PF14690.1 gi|385804984|ref|YP_005841384.1| - 0.14 12.2 0.5 15 5.6 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Lar_restr_allev PF14354.1 gi|385804984|ref|YP_005841384.1| - 0.18 12.1 1.9 0.29 11.4 1.3 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_5 PF13719.1 gi|385804984|ref|YP_005841384.1| - 0.2 11.2 2.9 0.37 10.4 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|385804984|ref|YP_005841384.1| - 0.21 11.3 1.1 0.96 9.1 0.7 1.9 1 1 0 1 1 1 0 Nudix N-terminal zf-HYPF PF07503.7 gi|385804984|ref|YP_005841384.1| - 0.28 10.6 4.1 4.6 6.7 0.2 2.2 2 0 0 2 2 2 0 HypF finger Zn-ribbon_8 PF09723.5 gi|385804984|ref|YP_005841384.1| - 0.31 11.0 3.3 4.2 7.3 2.2 2.1 1 1 0 1 1 1 0 Zinc ribbon domain UPF0547 PF10571.4 gi|385804984|ref|YP_005841384.1| - 0.46 10.2 5.1 2 8.1 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF1610 PF07754.6 gi|385804984|ref|YP_005841384.1| - 0.5 10.5 4.1 1.1 9.3 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) DUF164 PF02591.10 gi|385804984|ref|YP_005841384.1| - 0.51 10.1 2.6 1.4 8.8 1.2 2.0 1 1 0 1 1 1 0 Putative zinc ribbon domain Sgf11 PF08209.6 gi|385804984|ref|YP_005841384.1| - 0.67 9.3 3.5 0.86 8.9 0.1 2.3 2 1 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Prim_Zn_Ribbon PF08273.7 gi|385804984|ref|YP_005841384.1| - 1.1 9.3 6.6 1.5 8.9 0.2 2.2 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase zf-RING_3 PF14369.1 gi|385804984|ref|YP_005841384.1| - 1.2 9.1 3.7 13 5.8 2.5 2.1 1 1 1 2 2 2 0 zinc-finger DUF35_N PF12172.3 gi|385804984|ref|YP_005841384.1| - 3.7 7.5 4.9 10 6.1 0.4 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF1931 PF09123.6 gi|385804985|ref|YP_005841385.1| - 0.00028 20.8 0.5 0.00031 20.6 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) Histone PF00125.19 gi|385804985|ref|YP_005841385.1| - 0.00054 20.0 0.1 0.00073 19.6 0.0 1.5 1 1 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CBFD_NFYB_HMF PF00808.18 gi|385804985|ref|YP_005841385.1| - 0.0041 17.1 0.1 0.007 16.3 0.1 1.6 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Rib_5-P_isom_A PF06026.9 gi|385804986|ref|YP_005841386.1| - 3.8e-58 195.6 0.2 5e-58 195.2 0.1 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|385804986|ref|YP_005841386.1| - 1.1e-07 31.5 0.2 2.9e-05 23.7 0.0 2.4 2 0 0 2 2 2 2 DeoR C terminal sensor domain Sugar-bind PF04198.8 gi|385804986|ref|YP_005841386.1| - 0.084 11.7 0.1 0.18 10.6 0.1 1.6 1 1 0 1 1 1 0 Putative sugar-binding domain AAA_16 PF13191.1 gi|385804987|ref|YP_005841387.1| - 2.9e-15 56.7 0.3 5.6e-14 52.5 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|385804987|ref|YP_005841387.1| - 3e-10 40.3 0.0 6.5e-10 39.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|385804987|ref|YP_005841387.1| - 2.6e-06 27.6 0.0 6.4e-06 26.3 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdc6_C PF09079.6 gi|385804987|ref|YP_005841387.1| - 4.6e-06 26.2 0.1 2.8e-05 23.7 0.0 2.4 2 0 0 2 2 2 1 CDC6, C terminal Arch_ATPase PF01637.13 gi|385804987|ref|YP_005841387.1| - 4.3e-05 23.3 0.0 8.3e-05 22.3 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase AAA_19 PF13245.1 gi|385804987|ref|YP_005841387.1| - 9.8e-05 22.0 0.2 0.00025 20.7 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_35 PF14516.1 gi|385804987|ref|YP_005841387.1| - 0.00013 20.7 0.0 0.02 13.5 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain NACHT PF05729.7 gi|385804987|ref|YP_005841387.1| - 0.00022 20.8 0.0 0.00038 20.1 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_17 PF13207.1 gi|385804987|ref|YP_005841387.1| - 0.0003 21.5 0.1 0.0012 19.6 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|385804987|ref|YP_005841387.1| - 0.00045 20.1 0.1 0.0029 17.5 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|385804987|ref|YP_005841387.1| - 0.00059 19.7 0.0 0.0011 18.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|385804987|ref|YP_005841387.1| - 0.00083 19.0 0.0 0.0012 18.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|385804987|ref|YP_005841387.1| - 0.0038 17.5 0.0 0.018 15.3 0.0 2.3 2 1 0 2 2 1 1 AAA domain IstB_IS21 PF01695.12 gi|385804987|ref|YP_005841387.1| - 0.0052 16.2 1.0 0.074 12.4 0.7 2.2 1 1 0 1 1 1 1 IstB-like ATP binding protein NTPase_1 PF03266.10 gi|385804987|ref|YP_005841387.1| - 0.0081 15.8 0.2 0.017 14.7 0.1 1.6 1 0 0 1 1 1 1 NTPase RNA_helicase PF00910.17 gi|385804987|ref|YP_005841387.1| - 0.0099 16.0 0.0 0.019 15.1 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA_28 PF13521.1 gi|385804987|ref|YP_005841387.1| - 0.014 15.4 0.2 0.028 14.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|385804987|ref|YP_005841387.1| - 0.022 13.6 0.0 0.038 12.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein RuvB_N PF05496.7 gi|385804987|ref|YP_005841387.1| - 0.022 13.8 0.0 0.044 12.8 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus Rad17 PF03215.10 gi|385804987|ref|YP_005841387.1| - 0.023 13.4 0.0 0.034 12.8 0.0 1.4 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_30 PF13604.1 gi|385804987|ref|YP_005841387.1| - 0.025 14.1 0.3 0.072 12.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|385804987|ref|YP_005841387.1| - 0.031 13.1 0.0 0.043 12.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain DUF2075 PF09848.4 gi|385804987|ref|YP_005841387.1| - 0.038 12.9 0.0 0.064 12.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.13 gi|385804987|ref|YP_005841387.1| - 0.04 13.4 0.0 0.064 12.7 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_5 PF07728.9 gi|385804987|ref|YP_005841387.1| - 0.04 13.6 0.3 0.14 11.9 0.1 2.1 2 1 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA_32 PF13654.1 gi|385804987|ref|YP_005841387.1| - 0.049 12.3 0.1 12 4.4 0.0 2.8 3 0 0 3 3 3 0 AAA domain Sigma54_activat PF00158.21 gi|385804987|ref|YP_005841387.1| - 0.049 13.0 0.0 0.09 12.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_25 PF13481.1 gi|385804987|ref|YP_005841387.1| - 0.052 12.9 0.1 0.36 10.2 0.1 2.1 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|385804987|ref|YP_005841387.1| - 0.068 12.6 0.0 0.17 11.3 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_24 PF13479.1 gi|385804987|ref|YP_005841387.1| - 0.072 12.6 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|385804987|ref|YP_005841387.1| - 0.086 12.2 0.1 0.18 11.2 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF835 PF05763.7 gi|385804987|ref|YP_005841387.1| - 0.11 12.0 0.3 0.21 11.1 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF835) Phage-MuB_C PF09077.6 gi|385804987|ref|YP_005841387.1| - 0.13 11.9 0.0 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 Mu B transposition protein, C terminal Bac_DnaA PF00308.13 gi|385804987|ref|YP_005841387.1| - 0.15 11.6 0.1 0.29 10.7 0.1 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein MutS_V PF00488.16 gi|385804988|ref|YP_005841388.1| - 3.4e-09 36.4 0.0 6.4e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 MutS domain V HHH PF00633.18 gi|385804988|ref|YP_005841388.1| - 0.0065 16.1 0.0 0.022 14.4 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif IMS_HHH PF11798.3 gi|385804988|ref|YP_005841388.1| - 0.0078 16.2 0.0 0.035 14.1 0.0 2.1 2 0 0 2 2 2 1 IMS family HHH motif AAA PF00004.24 gi|385804988|ref|YP_005841388.1| - 0.021 15.0 0.9 0.2 11.8 0.0 2.9 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) HHH_5 PF14520.1 gi|385804988|ref|YP_005841388.1| - 0.077 13.1 0.3 0.077 13.1 0.2 2.9 3 0 0 3 3 3 0 Helix-hairpin-helix domain AAA_29 PF13555.1 gi|385804988|ref|YP_005841388.1| - 0.099 12.1 0.1 0.21 11.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|385804988|ref|YP_005841388.1| - 0.12 12.3 0.0 6.4 6.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain NAD_synthase PF02540.12 gi|385804989|ref|YP_005841389.1| - 5.7e-08 31.9 0.0 1.2e-07 30.9 0.0 1.5 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.16 gi|385804989|ref|YP_005841389.1| - 1.4e-07 31.3 0.1 2.3e-07 30.5 0.1 1.4 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|385804989|ref|YP_005841389.1| - 7.6e-07 27.9 0.0 2.3e-05 23.1 0.0 2.2 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.8 gi|385804989|ref|YP_005841389.1| - 0.00013 21.3 0.0 0.00064 19.0 0.0 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|385804989|ref|YP_005841389.1| - 0.0008 18.9 0.0 0.0016 17.9 0.0 1.5 1 0 0 1 1 1 1 PP-loop family DUF208 PF02677.9 gi|385804989|ref|YP_005841389.1| - 0.0051 16.6 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized BCR, COG1636 FTR_C PF02741.10 gi|385804989|ref|YP_005841389.1| - 0.62 9.8 4.0 0.42 10.3 0.2 2.4 3 0 0 3 3 3 0 FTR, proximal lobe TatC PF00902.13 gi|385804990|ref|YP_005841390.1| - 2.8e-34 118.3 14.0 3.6e-34 118.0 9.7 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) TatC PF00902.13 gi|385804991|ref|YP_005841391.1| - 2.4e-69 233.0 41.2 9.5e-38 129.7 13.2 2.2 2 0 0 2 2 2 2 Sec-independent protein translocase protein (TatC) HCV_env PF01539.12 gi|385804991|ref|YP_005841391.1| - 1.2 8.6 5.9 11 5.3 1.3 2.9 2 1 0 2 2 2 0 Hepatitis C virus envelope glycoprotein E1 DUF2627 PF11118.3 gi|385804991|ref|YP_005841391.1| - 8.5 6.5 10.5 0.31 11.1 0.1 4.0 2 1 2 4 4 4 0 Protein of unknown function (DUF2627) FtsJ PF01728.14 gi|385804992|ref|YP_005841392.1| - 1.7e-52 178.0 0.0 2.2e-52 177.6 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.15 gi|385804992|ref|YP_005841392.1| - 1.3e-09 37.6 0.5 2.5e-09 36.7 0.4 1.5 1 0 0 1 1 1 1 TRAM domain Methyltransf_31 PF13847.1 gi|385804992|ref|YP_005841392.1| - 9.2e-05 22.0 0.0 0.00046 19.8 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|385804992|ref|YP_005841392.1| - 0.00036 20.2 0.0 0.0017 18.1 0.0 2.0 1 1 1 2 2 2 1 Methyltransferase domain NSP13 PF06460.7 gi|385804992|ref|YP_005841392.1| - 0.0024 16.8 0.0 0.003 16.4 0.0 1.1 1 0 0 1 1 1 1 Coronavirus NSP13 Methyltransf_26 PF13659.1 gi|385804992|ref|YP_005841392.1| - 0.018 15.0 0.1 0.049 13.6 0.1 1.7 1 1 0 1 1 1 0 Methyltransferase domain CDC48_N PF02359.13 gi|385804992|ref|YP_005841392.1| - 0.047 13.6 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Methyltransf_18 PF12847.2 gi|385804992|ref|YP_005841392.1| - 0.07 13.7 0.1 0.18 12.4 0.1 1.8 1 1 0 1 1 1 0 Methyltransferase domain Fibrillarin PF01269.12 gi|385804992|ref|YP_005841392.1| - 0.12 11.2 0.0 0.18 10.7 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin PCNA_N PF00705.13 gi|385804993|ref|YP_005841393.1| - 4.9e-09 35.7 1.2 1.5e-08 34.2 0.3 2.0 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|385804993|ref|YP_005841393.1| - 7.9e-09 35.5 0.0 3.9e-08 33.2 0.0 2.1 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain DNA_pol3_beta_3 PF02768.10 gi|385804993|ref|YP_005841393.1| - 0.0037 16.8 0.4 0.013 15.0 0.1 1.9 2 1 0 2 2 2 1 DNA polymerase III beta subunit, C-terminal domain GST_C_2 PF13410.1 gi|385804994|ref|YP_005841394.1| - 0.056 13.3 0.1 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Glutathione S-transferase, C-terminal domain DNA_primase_lrg PF04104.9 gi|385804995|ref|YP_005841395.1| - 2.2e-18 66.4 0.0 4.3e-18 65.5 0.0 1.5 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit ABC2_membrane PF01061.19 gi|385804996|ref|YP_005841396.1| - 0.22 10.6 3.9 0.26 10.3 2.7 1.0 1 0 0 1 1 1 0 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|385804996|ref|YP_005841396.1| - 0.26 10.0 3.1 0.26 10.0 2.1 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF3481 PF11980.3 gi|385804996|ref|YP_005841396.1| - 2.7 7.8 4.5 1.2 8.9 0.2 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3481) PepSY_TM PF03929.11 gi|385804996|ref|YP_005841396.1| - 9.9 6.7 7.4 6.4 7.3 1.4 2.2 2 0 0 2 2 2 0 PepSY-associated TM helix Hjc PF01870.13 gi|385804997|ref|YP_005841397.1| - 1.4e-27 95.1 0.0 1.7e-27 94.7 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) FKBP_C PF00254.23 gi|385804998|ref|YP_005841398.1| - 3.9e-20 71.6 0.0 5.9e-20 71.0 0.0 1.3 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase YajC PF02699.10 gi|385804998|ref|YP_005841398.1| - 0.017 14.7 0.0 0.037 13.7 0.0 1.5 1 0 0 1 1 1 0 Preprotein translocase subunit UvrC_HhH_N PF08459.6 gi|385805000|ref|YP_005841400.1| - 7.5e-40 136.0 0.0 1.5e-39 134.9 0.0 1.6 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH PF00633.18 gi|385805000|ref|YP_005841400.1| - 3.4e-10 39.0 0.0 1.6e-06 27.4 0.0 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|385805000|ref|YP_005841400.1| - 1.7e-09 37.7 0.0 5.2e-09 36.1 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|385805000|ref|YP_005841400.1| - 2.1e-09 37.1 0.0 6e-09 35.6 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif UVR PF02151.14 gi|385805000|ref|YP_005841400.1| - 6.1e-09 35.0 4.9 3.8e-08 32.5 1.1 2.9 2 0 0 2 2 2 1 UvrB/uvrC motif GIY-YIG PF01541.19 gi|385805000|ref|YP_005841400.1| - 4.9e-06 26.8 0.0 1.1e-05 25.7 0.0 1.6 1 0 0 1 1 1 1 GIY-YIG catalytic domain 5_3_exonuc PF01367.15 gi|385805000|ref|YP_005841400.1| - 0.001 19.2 0.0 0.0086 16.2 0.0 2.3 1 1 1 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold IMS_HHH PF11798.3 gi|385805000|ref|YP_005841400.1| - 0.0067 16.4 0.0 1.9 8.6 0.0 2.7 2 0 0 2 2 2 1 IMS family HHH motif HHH_8 PF14716.1 gi|385805000|ref|YP_005841400.1| - 0.066 13.4 0.0 7.7 6.7 0.0 3.2 3 0 0 3 3 3 0 Helix-hairpin-helix domain Transposase_20 PF02371.11 gi|385805000|ref|YP_005841400.1| - 0.091 12.8 0.0 9 6.4 0.0 2.6 1 1 1 2 2 2 0 Transposase IS116/IS110/IS902 family ABC_tran PF00005.22 gi|385805001|ref|YP_005841401.1| - 1.3e-26 93.5 0.0 2.4e-26 92.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|385805001|ref|YP_005841401.1| - 3e-12 47.1 0.0 6.1e-08 32.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|385805001|ref|YP_005841401.1| - 0.0016 18.8 0.0 0.003 18.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) DUF258 PF03193.11 gi|385805001|ref|YP_005841401.1| - 0.0033 16.6 0.0 0.0097 15.1 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|385805001|ref|YP_005841401.1| - 0.0065 15.9 0.1 0.014 14.9 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|385805001|ref|YP_005841401.1| - 0.0099 15.8 0.2 0.2 11.6 0.0 2.7 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|385805001|ref|YP_005841401.1| - 0.014 14.8 0.0 0.29 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain AAA_23 PF13476.1 gi|385805001|ref|YP_005841401.1| - 0.027 14.7 0.1 0.054 13.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|385805001|ref|YP_005841401.1| - 0.034 13.3 0.0 9.3 5.4 0.0 2.7 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|385805001|ref|YP_005841401.1| - 0.045 13.7 0.0 0.13 12.2 0.0 1.7 1 1 1 2 2 2 0 AAA ATPase domain ArgK PF03308.11 gi|385805001|ref|YP_005841401.1| - 0.055 12.2 0.2 0.055 12.2 0.1 2.4 2 1 1 3 3 3 0 ArgK protein AAA_22 PF13401.1 gi|385805001|ref|YP_005841401.1| - 0.12 12.5 0.6 3.9 7.6 0.0 2.9 3 1 1 4 4 4 0 AAA domain ABC2_membrane_2 PF12679.2 gi|385805002|ref|YP_005841402.1| - 4.8e-44 150.2 22.1 5.5e-44 150.0 15.3 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|385805002|ref|YP_005841402.1| - 3.2e-09 36.2 17.1 3.2e-09 36.2 11.8 2.1 2 1 1 3 3 3 1 ABC-2 type transporter ABC2_membrane_4 PF12730.2 gi|385805002|ref|YP_005841402.1| - 2.8e-07 29.9 34.2 1.7e-06 27.4 23.2 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|385805002|ref|YP_005841402.1| - 6.5e-07 28.8 14.1 6.5e-07 28.8 9.8 2.4 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|385805002|ref|YP_005841402.1| - 4.1e-06 26.0 17.7 4.1e-06 26.0 12.3 2.9 1 1 2 3 3 3 2 ABC-2 family transporter protein DNA_ligase_aden PF01653.13 gi|385805003|ref|YP_005841403.1| - 2.7e-100 335.3 0.0 4.2e-100 334.7 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.11 gi|385805003|ref|YP_005841403.1| - 3.6e-28 97.0 1.8 9e-28 95.7 1.3 1.7 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.2 gi|385805003|ref|YP_005841403.1| - 3.2e-21 74.9 0.2 2.1e-18 65.9 0.0 3.0 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|385805003|ref|YP_005841403.1| - 2.4e-17 62.8 1.8 2.5e-10 40.3 0.2 3.4 4 0 0 4 4 4 2 Helix-hairpin-helix domain BRCT PF00533.21 gi|385805003|ref|YP_005841403.1| - 7.6e-10 38.7 0.0 1.8e-09 37.6 0.0 1.7 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain DNA_ligase_ZBD PF03119.11 gi|385805003|ref|YP_005841403.1| - 3e-05 23.6 1.5 7.2e-05 22.4 1.0 1.7 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain HHH PF00633.18 gi|385805003|ref|YP_005841403.1| - 0.0079 15.8 0.1 19 5.2 0.0 4.1 4 0 0 4 4 4 1 Helix-hairpin-helix motif Cys_Met_Meta_PP PF01053.15 gi|385805004|ref|YP_005841404.1| - 1.4e-127 425.1 0.0 1.6e-127 424.9 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|385805004|ref|YP_005841404.1| - 8.5e-08 31.5 0.2 3.9e-07 29.3 0.0 1.9 2 0 0 2 2 2 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|385805004|ref|YP_005841404.1| - 1.2e-05 24.2 0.1 2.1e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|385805004|ref|YP_005841404.1| - 7.2e-05 22.0 0.2 0.00013 21.1 0.1 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|385805004|ref|YP_005841404.1| - 0.00066 18.8 1.7 0.0012 17.9 1.2 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Abhydrolase_1 PF00561.15 gi|385805005|ref|YP_005841405.1| - 3.8e-22 78.9 0.1 4.9e-22 78.6 0.1 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|385805005|ref|YP_005841405.1| - 1.4e-17 64.3 3.8 2.1e-17 63.7 2.7 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|385805005|ref|YP_005841405.1| - 0.0012 18.5 0.0 0.0042 16.8 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Esterase PF00756.15 gi|385805005|ref|YP_005841405.1| - 0.0015 17.9 0.0 0.0025 17.2 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Peptidase_S9 PF00326.16 gi|385805005|ref|YP_005841405.1| - 0.0021 17.3 0.3 0.014 14.6 0.0 2.2 2 1 0 2 2 2 1 Prolyl oligopeptidase family Tannase PF07519.6 gi|385805005|ref|YP_005841405.1| - 0.0041 15.8 0.1 0.0088 14.8 0.1 1.5 1 0 0 1 1 1 1 Tannase and feruloyl esterase Abhydrolase_4 PF08386.5 gi|385805005|ref|YP_005841405.1| - 0.028 14.3 0.0 0.078 12.8 0.0 1.7 1 0 0 1 1 1 0 TAP-like protein MFS_1 PF07690.11 gi|385805006|ref|YP_005841406.1| - 8.1e-32 110.2 57.9 3.7e-24 85.1 32.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|385805006|ref|YP_005841406.1| - 2.8e-05 22.9 16.3 2.8e-05 22.9 11.3 2.4 2 1 0 2 2 2 1 Sugar (and other) transporter DHHA1 PF02272.14 gi|385805007|ref|YP_005841407.1| - 3.3e-14 52.3 0.3 7.6e-14 51.1 0.2 1.7 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|385805007|ref|YP_005841407.1| - 1.1e-13 51.0 0.0 1.7e-13 50.4 0.0 1.3 1 0 0 1 1 1 1 DHH family HAMP PF00672.20 gi|385805008|ref|YP_005841408.1| - 0.019 15.1 0.3 0.025 14.7 0.2 1.2 1 0 0 1 1 1 0 HAMP domain PRRSV_2b PF07069.6 gi|385805008|ref|YP_005841408.1| - 0.028 14.6 1.0 0.036 14.3 0.7 1.2 1 0 0 1 1 1 0 Porcine reproductive and respiratory syndrome virus 2b PHO4 PF01384.15 gi|385805009|ref|YP_005841409.1| - 8.4e-45 152.8 34.5 8.4e-45 152.8 23.9 1.5 1 1 1 2 2 2 1 Phosphate transporter family UbiA PF01040.13 gi|385805009|ref|YP_005841409.1| - 0.0019 17.4 15.6 0.0019 17.4 10.8 4.0 1 1 0 3 3 3 1 UbiA prenyltransferase family DUF21 PF01595.15 gi|385805010|ref|YP_005841410.1| - 2.9e-54 183.1 0.2 3.9e-54 182.7 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|385805010|ref|YP_005841410.1| - 2.4e-19 68.9 1.1 2.4e-19 68.9 0.7 2.0 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.23 gi|385805010|ref|YP_005841410.1| - 1.2e-17 63.4 8.9 1.3e-09 37.6 0.4 3.2 4 0 0 4 4 4 2 CBS domain GST_N_3 PF13417.1 gi|385805011|ref|YP_005841411.1| - 5.8e-16 58.4 0.0 7.1e-16 58.1 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|385805011|ref|YP_005841411.1| - 5.8e-13 48.6 0.0 7e-13 48.3 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|385805011|ref|YP_005841411.1| - 8.5e-13 48.0 0.0 1.1e-12 47.6 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N PF02798.15 gi|385805011|ref|YP_005841411.1| - 0.00017 21.6 0.0 0.00021 21.4 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|385805011|ref|YP_005841411.1| - 0.014 15.6 0.0 0.016 15.4 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Curlin_rpt PF07012.7 gi|385805011|ref|YP_005841411.1| - 0.48 10.1 2.4 1.2 8.8 0.1 2.1 2 0 0 2 2 2 0 Curlin associated repeat AhpC-TSA PF00578.16 gi|385805012|ref|YP_005841412.1| - 5.6e-15 55.1 0.0 7.1e-15 54.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|385805012|ref|YP_005841412.1| - 0.002 17.7 0.0 0.0036 16.8 0.0 1.4 1 1 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|385805012|ref|YP_005841412.1| - 0.0087 15.9 0.0 0.5 10.3 0.0 2.1 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme Sua5_yciO_yrdC PF01300.13 gi|385805013|ref|YP_005841413.1| - 9.4e-48 161.8 0.1 1.1e-47 161.5 0.1 1.0 1 0 0 1 1 1 1 Telomere recombination tRNA-synt_2b PF00587.20 gi|385805014|ref|YP_005841414.1| - 1.1e-52 178.1 0.0 1.6e-52 177.5 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|385805014|ref|YP_005841414.1| - 6.4e-19 67.6 0.1 1.5e-18 66.4 0.0 1.7 1 0 0 1 1 1 1 Anticodon binding domain zinc_ribbon_5 PF13719.1 gi|385805014|ref|YP_005841414.1| - 0.044 13.3 0.5 2.2 7.9 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|385805014|ref|YP_005841414.1| - 0.044 13.4 0.6 2.3 7.9 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|385805014|ref|YP_005841414.1| - 0.088 12.0 2.4 0.58 9.4 1.6 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|385805014|ref|YP_005841414.1| - 0.18 11.7 0.1 5.7 6.9 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain DUF3732 PF12532.3 gi|385805015|ref|YP_005841415.1| - 0.15 11.5 0.1 0.22 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3732) Arginosuc_synth PF00764.14 gi|385805016|ref|YP_005841416.1| - 7.6e-144 479.5 0.0 8.8e-144 479.2 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Asn_synthase PF00733.16 gi|385805016|ref|YP_005841416.1| - 3.3e-05 23.5 0.2 7.1e-05 22.4 0.0 1.6 2 0 0 2 2 2 1 Asparagine synthase QueC PF06508.8 gi|385805016|ref|YP_005841416.1| - 5.3e-05 22.5 0.0 9.8e-05 21.7 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|385805016|ref|YP_005841416.1| - 0.001 17.6 0.0 0.0016 17.0 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|385805016|ref|YP_005841416.1| - 0.0072 15.2 0.0 0.0095 14.8 0.0 1.2 1 0 0 1 1 1 1 NAD synthase Acyl-CoA_dh_2 PF08028.6 gi|385805016|ref|YP_005841416.1| - 0.023 14.9 4.2 1.2 9.4 0.0 3.2 2 1 1 3 3 3 0 Acyl-CoA dehydrogenase, C-terminal domain Lyase_1 PF00206.15 gi|385805017|ref|YP_005841417.1| - 2.2e-55 188.0 0.0 3.8e-55 187.2 0.0 1.4 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|385805017|ref|YP_005841417.1| - 3.2e-09 36.7 0.1 1.4e-08 34.6 0.1 2.2 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal PT-TG PF14449.1 gi|385805018|ref|YP_005841418.1| - 0.033 13.9 0.7 0.082 12.6 0.0 1.9 2 1 1 3 3 3 0 Pre-toxin TG RimK PF08443.6 gi|385805019|ref|YP_005841419.1| - 1.1e-36 126.1 0.0 2.9e-36 124.7 0.0 1.6 2 0 0 2 2 2 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|385805019|ref|YP_005841419.1| - 2.2e-17 63.3 0.0 3.8e-17 62.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|385805019|ref|YP_005841419.1| - 1.5e-09 37.1 0.0 2.4e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon GSH-S_ATP PF02955.11 gi|385805019|ref|YP_005841419.1| - 2.2e-09 36.7 0.0 5.7e-09 35.3 0.0 1.7 2 0 0 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|385805019|ref|YP_005841419.1| - 1.8e-08 34.4 0.0 2.6e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|385805019|ref|YP_005841419.1| - 2.9e-06 26.7 0.0 8.6e-06 25.1 0.0 1.9 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.17 gi|385805019|ref|YP_005841419.1| - 0.00057 19.2 0.0 0.002 17.4 0.0 1.9 2 1 0 2 2 2 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|385805019|ref|YP_005841419.1| - 0.0033 16.6 0.0 0.052 12.7 0.0 2.3 1 1 1 2 2 2 1 ATP-grasp domain ThiF PF00899.16 gi|385805019|ref|YP_005841419.1| - 0.074 12.8 0.5 0.68 9.7 0.0 2.3 2 0 0 2 2 2 0 ThiF family Semialdhyde_dh PF01118.19 gi|385805020|ref|YP_005841420.1| - 1e-27 96.8 0.0 1.8e-27 96.0 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|385805020|ref|YP_005841420.1| - 5.7e-07 29.5 0.0 1.6e-06 28.1 0.0 1.9 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|385805020|ref|YP_005841420.1| - 0.0031 17.4 0.0 0.013 15.4 0.0 1.9 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Epimerase PF01370.16 gi|385805020|ref|YP_005841420.1| - 0.0073 15.7 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|385805020|ref|YP_005841420.1| - 0.013 15.4 0.0 0.041 13.8 0.0 1.9 2 0 0 2 2 2 0 NADH(P)-binding Endotoxin_C PF03944.9 gi|385805020|ref|YP_005841420.1| - 0.14 12.3 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 delta endotoxin AA_kinase PF00696.23 gi|385805021|ref|YP_005841421.1| - 1.5e-29 103.2 3.1 1.9e-29 102.9 2.1 1.1 1 0 0 1 1 1 1 Amino acid kinase family Aminotran_3 PF00202.16 gi|385805022|ref|YP_005841422.1| - 2.8e-98 328.8 0.3 3.3e-98 328.6 0.2 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Cys_Met_Meta_PP PF01053.15 gi|385805022|ref|YP_005841422.1| - 0.00032 19.1 0.0 0.0034 15.7 0.0 2.0 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Peptidase_M20 PF01546.23 gi|385805023|ref|YP_005841423.1| - 1.3e-24 86.7 0.0 2e-24 86.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|385805023|ref|YP_005841423.1| - 0.00024 20.8 0.0 0.00056 19.6 0.0 1.7 1 0 0 1 1 1 1 Peptidase dimerisation domain OTCace_N PF02729.16 gi|385805024|ref|YP_005841424.1| - 2.5e-48 163.3 0.0 4.6e-48 162.4 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|385805024|ref|YP_005841424.1| - 2.5e-43 147.6 0.0 4.8e-43 146.7 0.0 1.5 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Helicase_C_2 PF13307.1 gi|385805025|ref|YP_005841425.1| - 5.4e-33 114.3 0.0 1.6e-32 112.7 0.0 1.8 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|385805025|ref|YP_005841425.1| - 5e-23 81.3 0.0 9.1e-23 80.5 0.0 1.4 1 0 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|385805025|ref|YP_005841425.1| - 2.3e-08 33.7 0.6 7.8e-06 25.4 0.0 3.2 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|385805025|ref|YP_005841425.1| - 9.2e-06 25.6 0.8 0.00046 20.0 0.5 2.8 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit Zot PF05707.7 gi|385805025|ref|YP_005841425.1| - 0.00064 19.2 0.1 0.057 12.8 0.0 2.4 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_19 PF13245.1 gi|385805025|ref|YP_005841425.1| - 0.00077 19.1 0.2 0.0019 17.9 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain PhoH PF02562.11 gi|385805025|ref|YP_005841425.1| - 0.0026 17.0 0.1 0.017 14.3 0.0 2.0 2 0 0 2 2 2 1 PhoH-like protein KaiC PF06745.8 gi|385805025|ref|YP_005841425.1| - 0.0033 16.5 0.0 0.006 15.7 0.0 1.4 1 0 0 1 1 1 1 KaiC AAA PF00004.24 gi|385805025|ref|YP_005841425.1| - 0.011 15.9 1.1 0.41 10.8 0.1 2.9 2 2 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|385805025|ref|YP_005841425.1| - 0.014 14.9 0.1 0.033 13.7 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|385805025|ref|YP_005841425.1| - 0.015 15.3 1.2 0.66 9.9 0.8 3.1 1 1 0 1 1 1 0 AAA ATPase domain DUF2075 PF09848.4 gi|385805025|ref|YP_005841425.1| - 0.018 14.0 0.0 0.91 8.4 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_34 PF13872.1 gi|385805025|ref|YP_005841425.1| - 0.023 13.4 0.0 0.04 12.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 TPR_MLP1_2 PF07926.7 gi|385805025|ref|YP_005841425.1| - 0.03 14.0 0.3 0.088 12.5 0.2 1.8 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein AAA_11 PF13086.1 gi|385805025|ref|YP_005841425.1| - 0.032 13.8 0.1 0.091 12.3 0.1 1.7 2 0 0 2 2 2 0 AAA domain HAUS-augmin3 PF14932.1 gi|385805025|ref|YP_005841425.1| - 0.051 12.7 2.6 1.9 7.6 0.0 3.1 3 0 0 3 3 3 0 HAUS augmin-like complex subunit 3 Myosin_tail_1 PF01576.14 gi|385805025|ref|YP_005841425.1| - 0.054 11.2 0.8 0.086 10.5 0.6 1.2 1 0 0 1 1 1 0 Myosin tail AAA_22 PF13401.1 gi|385805025|ref|YP_005841425.1| - 0.054 13.6 2.2 5.4 7.1 0.1 3.3 1 1 2 3 3 3 0 AAA domain Gluconate_2-dh3 PF13618.1 gi|385805025|ref|YP_005841425.1| - 0.53 10.4 5.1 16 5.6 0.0 3.4 3 0 0 3 3 3 0 Gluconate 2-dehydrogenase subunit 3 RsbRD_N PF14361.1 gi|385805025|ref|YP_005841425.1| - 2.6 8.5 6.1 6.9 7.1 0.7 3.5 2 1 0 3 3 3 0 RsbT co-antagonist protein rsbRD N-terminal domain p450 PF00067.17 gi|385805026|ref|YP_005841426.1| - 2.2e-90 303.4 0.0 2.7e-90 303.1 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 2_5_RNA_ligase2 PF13563.1 gi|385805027|ref|YP_005841427.1| - 2.5e-13 49.9 0.0 2.9e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|385805027|ref|YP_005841427.1| - 4.2e-05 23.3 0.0 0.00011 21.9 0.0 1.7 1 1 1 2 2 2 1 AKAP7 2'5' RNA ligase-like domain LigT_PEase PF02834.11 gi|385805027|ref|YP_005841427.1| - 4.2e-05 23.4 0.0 0.00098 19.0 0.0 2.5 3 0 0 3 3 3 1 LigT like Phosphoesterase Usp PF00582.21 gi|385805028|ref|YP_005841428.1| - 3.1e-30 105.2 0.5 4e-30 104.8 0.3 1.1 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.11 gi|385805028|ref|YP_005841428.1| - 0.046 14.2 0.1 0.064 13.7 0.0 1.4 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase TauE PF01925.14 gi|385805029|ref|YP_005841429.1| - 1.8e-32 112.7 17.8 1.8e-32 112.7 12.4 1.5 1 1 0 1 1 1 1 Sulfite exporter TauE/SafE IncA PF04156.9 gi|385805029|ref|YP_005841429.1| - 0.44 10.1 0.0 0.44 10.1 0.0 2.9 4 0 0 4 4 4 0 IncA protein UvrB PF12344.3 gi|385805030|ref|YP_005841430.1| - 4.5e-22 77.2 3.6 7.1e-22 76.6 1.2 2.2 2 0 0 2 2 2 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|385805030|ref|YP_005841430.1| - 1.9e-14 53.2 0.0 4.7e-14 52.0 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain UVR PF02151.14 gi|385805030|ref|YP_005841430.1| - 8.3e-10 37.8 4.1 3.2e-09 36.0 2.8 2.1 1 0 0 1 1 1 1 UvrB/uvrC motif ResIII PF04851.10 gi|385805030|ref|YP_005841430.1| - 1.5e-08 34.6 0.1 1e-07 31.9 0.0 2.3 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|385805030|ref|YP_005841430.1| - 9.3e-05 21.9 0.1 0.003 17.0 0.0 2.9 2 1 0 3 3 3 1 DEAD/DEAH box helicase UB2H PF14814.1 gi|385805030|ref|YP_005841430.1| - 0.0057 16.3 0.0 0.02 14.5 0.0 2.0 1 1 0 1 1 1 1 Bifunctional transglycosylase second domain AAA_19 PF13245.1 gi|385805030|ref|YP_005841430.1| - 0.0067 16.1 0.1 6.6 6.5 0.0 3.2 4 0 0 4 4 4 2 Part of AAA domain DUF87 PF01935.12 gi|385805030|ref|YP_005841430.1| - 0.036 13.8 3.5 0.067 12.9 0.1 2.8 3 0 0 3 3 3 0 Domain of unknown function DUF87 AAA PF00004.24 gi|385805030|ref|YP_005841430.1| - 0.038 14.2 0.5 2.2 8.4 0.0 3.5 4 0 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) Cpl-7 PF08230.6 gi|385805030|ref|YP_005841430.1| - 0.086 12.5 0.1 18 5.1 0.0 2.7 2 0 0 2 2 2 0 Cpl-7 lysozyme C-terminal domain NACHT PF05729.7 gi|385805030|ref|YP_005841430.1| - 0.11 12.1 0.2 4.4 6.9 0.0 2.4 2 0 0 2 2 2 0 NACHT domain Med9 PF07544.8 gi|385805031|ref|YP_005841431.1| - 0.002 17.7 1.1 0.083 12.6 0.1 2.2 1 1 1 2 2 2 1 RNA polymerase II transcription mediator complex subunit 9 DUF619 PF04768.8 gi|385805031|ref|YP_005841431.1| - 0.0049 16.2 0.2 0.0057 16.0 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF619) Nucleo_P87 PF07267.6 gi|385805031|ref|YP_005841431.1| - 0.0051 15.5 0.2 0.0057 15.4 0.2 1.1 1 0 0 1 1 1 1 Nucleopolyhedrovirus capsid protein P87 Latarcin PF10279.4 gi|385805031|ref|YP_005841431.1| - 0.0098 16.0 0.4 0.02 15.0 0.3 1.5 1 1 0 1 1 1 1 Latarcin precursor HrpJ PF07201.6 gi|385805031|ref|YP_005841431.1| - 0.013 15.5 4.9 0.021 14.8 3.4 1.3 1 1 0 1 1 1 0 HrpJ-like domain DUF3509 PF12021.3 gi|385805031|ref|YP_005841431.1| - 0.015 15.0 1.0 0.023 14.4 0.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3509) KorB PF08535.5 gi|385805031|ref|YP_005841431.1| - 0.037 14.1 0.4 0.1 12.7 0.2 1.7 1 1 1 2 2 2 0 KorB domain TPR_MLP1_2 PF07926.7 gi|385805031|ref|YP_005841431.1| - 0.06 13.0 8.6 0.088 12.5 6.0 1.3 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein Tropomyosin PF00261.15 gi|385805031|ref|YP_005841431.1| - 0.085 11.9 7.4 0.15 11.0 5.1 1.4 1 1 0 1 1 1 0 Tropomyosin SCO1-SenC PF02630.9 gi|385805031|ref|YP_005841431.1| - 0.11 12.0 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 SCO1/SenC AAA_32 PF13654.1 gi|385805031|ref|YP_005841431.1| - 0.15 10.7 3.3 0.15 10.6 2.3 1.0 1 0 0 1 1 1 0 AAA domain DUF2205 PF10224.4 gi|385805031|ref|YP_005841431.1| - 0.18 11.4 2.3 0.44 10.1 1.6 1.8 1 1 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) Phage_GP20 PF06810.6 gi|385805031|ref|YP_005841431.1| - 0.28 10.6 5.8 0.41 10.0 4.0 1.4 1 1 0 1 1 1 0 Phage minor structural protein GP20 ATP-synt_B PF00430.13 gi|385805031|ref|YP_005841431.1| - 0.39 10.5 8.9 8 6.2 0.0 2.0 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) ApoLp-III PF07464.6 gi|385805031|ref|YP_005841431.1| - 0.52 10.3 4.7 0.79 9.7 3.2 1.2 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) FliE PF02049.13 gi|385805031|ref|YP_005841431.1| - 0.68 9.9 3.1 0.73 9.9 1.0 1.7 1 1 1 2 2 2 0 Flagellar hook-basal body complex protein FliE FUSC PF04632.7 gi|385805031|ref|YP_005841431.1| - 0.77 8.1 4.0 0.88 7.9 2.8 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family Baculo_PEP_C PF04513.7 gi|385805031|ref|YP_005841431.1| - 1.1 9.0 4.4 2 8.2 3.0 1.5 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4404 PF14357.1 gi|385805031|ref|YP_005841431.1| - 1.4 9.4 9.0 7.4 7.0 1.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) DUF521 PF04412.8 gi|385805032|ref|YP_005841432.1| - 0.068 11.7 0.0 0.1 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF521) DUF95 PF01944.12 gi|385805033|ref|YP_005841433.1| - 1.1e-25 90.3 17.1 1.1e-25 90.3 11.8 3.6 2 1 0 3 3 3 1 Integral membrane protein DUF95 Rhodanese PF00581.15 gi|385805034|ref|YP_005841434.1| - 7e-36 123.0 0.1 1.3e-19 70.6 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.15 gi|385805035|ref|YP_005841435.1| - 4.8e-37 126.7 0.0 3.2e-19 69.3 0.0 2.5 2 1 1 3 3 3 2 Rhodanese-like domain DUF2080 PF09853.4 gi|385805037|ref|YP_005841437.1| - 0.047 13.4 0.0 0.069 12.9 0.0 1.3 1 0 0 1 1 1 0 Putative transposon-encoded protein (DUF2080) Methyltransf_11 PF08241.7 gi|385805038|ref|YP_005841438.1| - 9.3e-23 80.5 0.0 1.5e-22 79.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|385805038|ref|YP_005841438.1| - 3.6e-17 62.3 0.0 4.3e-17 62.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|385805038|ref|YP_005841438.1| - 4e-12 46.1 0.0 5.1e-12 45.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|385805038|ref|YP_005841438.1| - 4.6e-11 42.9 0.0 7.5e-11 42.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|385805038|ref|YP_005841438.1| - 4.5e-10 40.0 0.0 7.3e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|385805038|ref|YP_005841438.1| - 2.8e-09 36.4 0.0 5.2e-09 35.5 0.0 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|385805038|ref|YP_005841438.1| - 5.1e-09 36.5 0.0 7.8e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|385805038|ref|YP_005841438.1| - 2.6e-06 26.3 0.0 3.5e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.7 gi|385805038|ref|YP_005841438.1| - 2.5e-05 23.7 0.0 3.7e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_26 PF13659.1 gi|385805038|ref|YP_005841438.1| - 4.3e-05 23.5 0.0 0.00011 22.2 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.13 gi|385805038|ref|YP_005841438.1| - 0.00045 19.4 0.0 0.00059 19.1 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase PCMT PF01135.14 gi|385805038|ref|YP_005841438.1| - 0.00086 18.9 0.0 0.0015 18.1 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|385805038|ref|YP_005841438.1| - 0.013 14.5 0.0 0.016 14.3 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_29 PF03141.11 gi|385805038|ref|YP_005841438.1| - 0.017 13.4 0.0 0.021 13.1 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.9 gi|385805038|ref|YP_005841438.1| - 0.043 13.1 0.0 0.083 12.2 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_8 PF05148.10 gi|385805038|ref|YP_005841438.1| - 0.1 12.1 0.0 0.22 11.1 0.0 1.5 2 0 0 2 2 2 0 Hypothetical methyltransferase Methyltransf_32 PF13679.1 gi|385805038|ref|YP_005841438.1| - 0.11 12.1 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.15 gi|385805038|ref|YP_005841438.1| - 0.12 11.4 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DUF2934 PF11154.3 gi|385805038|ref|YP_005841438.1| - 0.58 9.5 4.1 0.2 11.0 0.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2934) KaiC PF06745.8 gi|385805039|ref|YP_005841439.1| - 0.0032 16.6 0.1 0.0041 16.2 0.0 1.1 1 0 0 1 1 1 1 KaiC DUF2072 PF09845.4 gi|385805041|ref|YP_005841441.1| - 1.2e-28 99.6 6.7 2.3e-14 53.4 0.3 2.6 2 1 1 3 3 3 2 Zn-ribbon containing protein (DUF2072) zinc_ribbon_2 PF13240.1 gi|385805041|ref|YP_005841441.1| - 0.076 12.5 4.2 0.2 11.2 2.9 1.8 1 0 0 1 1 1 0 zinc-ribbon domain DUF1451 PF07295.6 gi|385805041|ref|YP_005841441.1| - 0.12 12.1 0.5 0.27 10.9 0.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) zf-C2H2_6 PF13912.1 gi|385805041|ref|YP_005841441.1| - 0.14 12.0 0.1 0.14 12.0 0.0 1.8 2 0 0 2 2 2 0 C2H2-type zinc finger Zn-ribbon_8 PF09723.5 gi|385805041|ref|YP_005841441.1| - 0.16 11.9 1.2 0.52 10.2 0.8 1.9 1 0 0 1 1 1 0 Zinc ribbon domain zf-C2HC5 PF06221.8 gi|385805041|ref|YP_005841441.1| - 0.17 11.6 0.5 0.34 10.7 0.4 1.4 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type DUF1272 PF06906.6 gi|385805041|ref|YP_005841441.1| - 0.32 10.8 1.6 0.63 9.9 1.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-C2H2 PF00096.21 gi|385805041|ref|YP_005841441.1| - 1.1 9.6 3.9 2.9 8.4 0.2 2.5 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-ribbon_3 PF13248.1 gi|385805041|ref|YP_005841441.1| - 3.6 6.9 5.6 42 3.5 3.9 2.2 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|385805041|ref|YP_005841441.1| - 9.5 5.6 6.8 16 4.8 0.1 2.8 3 0 0 3 3 3 0 TFIIB zinc-binding DUF2073 PF09846.4 gi|385805042|ref|YP_005841442.1| - 3.1e-46 155.3 0.3 4e-46 154.9 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.18 gi|385805043|ref|YP_005841443.1| - 5.4e-15 55.3 0.0 7.9e-15 54.8 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|385805043|ref|YP_005841443.1| - 8.3e-11 41.6 0.1 5.8e-05 22.6 0.0 2.6 2 2 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|385805043|ref|YP_005841443.1| - 6.1e-07 28.8 0.0 0.00038 19.7 0.0 2.5 2 1 1 3 3 3 2 ADP-ribosylation factor family AAA_17 PF13207.1 gi|385805043|ref|YP_005841443.1| - 6.6e-06 26.9 0.1 1.2e-05 26.0 0.1 1.4 1 1 0 1 1 1 1 AAA domain SRPRB PF09439.5 gi|385805043|ref|YP_005841443.1| - 1.5e-05 24.2 0.0 0.058 12.6 0.0 2.3 2 0 0 2 2 2 2 Signal recognition particle receptor beta subunit AAA_18 PF13238.1 gi|385805043|ref|YP_005841443.1| - 2.7e-05 24.4 0.0 3.9e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain FeoB_N PF02421.13 gi|385805043|ref|YP_005841443.1| - 4.7e-05 22.7 0.5 0.00068 18.9 0.4 2.5 1 1 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|385805043|ref|YP_005841443.1| - 9.9e-05 22.8 0.0 0.00041 20.8 0.0 1.9 1 1 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|385805043|ref|YP_005841443.1| - 0.00052 19.8 0.0 0.085 12.6 0.2 2.7 1 1 1 2 2 2 1 Dynamin family NB-ARC PF00931.17 gi|385805043|ref|YP_005841443.1| - 0.00053 18.9 0.0 0.0018 17.2 0.0 1.7 2 0 0 2 2 2 1 NB-ARC domain Septin PF00735.13 gi|385805043|ref|YP_005841443.1| - 0.00066 18.7 0.0 0.001 18.1 0.0 1.5 1 1 0 1 1 1 1 Septin AAA_22 PF13401.1 gi|385805043|ref|YP_005841443.1| - 0.0038 17.3 0.0 0.0065 16.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|385805043|ref|YP_005841443.1| - 0.0044 16.7 0.2 0.028 14.1 0.0 2.1 2 0 0 2 2 2 1 Part of AAA domain AAA PF00004.24 gi|385805043|ref|YP_005841443.1| - 0.0065 16.6 0.0 0.02 15.0 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|385805043|ref|YP_005841443.1| - 0.0071 16.3 0.1 0.085 12.8 0.0 2.1 1 1 1 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|385805043|ref|YP_005841443.1| - 0.0074 16.4 0.0 0.017 15.2 0.0 1.7 2 0 0 2 2 1 1 RNA helicase cobW PF02492.14 gi|385805043|ref|YP_005841443.1| - 0.0082 15.5 0.0 3.7 6.9 0.0 2.3 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.1 gi|385805043|ref|YP_005841443.1| - 0.013 15.4 0.0 0.029 14.3 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain ArgK PF03308.11 gi|385805043|ref|YP_005841443.1| - 0.024 13.3 0.1 0.23 10.1 0.0 2.3 2 1 0 2 2 2 0 ArgK protein ABC_tran PF00005.22 gi|385805043|ref|YP_005841443.1| - 0.024 14.9 0.0 0.035 14.4 0.0 1.4 1 0 0 1 1 1 0 ABC transporter ATP-synt_ab PF00006.20 gi|385805043|ref|YP_005841443.1| - 0.029 13.8 0.0 0.059 12.8 0.0 1.5 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Zeta_toxin PF06414.7 gi|385805043|ref|YP_005841443.1| - 0.031 13.3 0.0 0.082 12.0 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin AAA_14 PF13173.1 gi|385805043|ref|YP_005841443.1| - 0.034 14.0 0.0 0.062 13.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|385805043|ref|YP_005841443.1| - 0.048 13.3 0.0 0.082 12.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Arch_ATPase PF01637.13 gi|385805043|ref|YP_005841443.1| - 0.067 12.8 0.0 0.092 12.4 0.0 1.5 1 1 0 1 1 1 0 Archaeal ATPase MMR_HSR1_C PF08438.5 gi|385805043|ref|YP_005841443.1| - 0.071 13.3 0.1 0.18 12.0 0.0 1.6 2 0 0 2 2 1 0 GTPase of unknown function C-terminal MobB PF03205.9 gi|385805043|ref|YP_005841443.1| - 0.081 12.6 0.0 0.27 10.9 0.0 1.9 1 1 1 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B RuvB_N PF05496.7 gi|385805043|ref|YP_005841443.1| - 0.084 11.9 0.0 0.15 11.0 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus FMN_bind PF04205.9 gi|385805043|ref|YP_005841443.1| - 0.086 13.0 0.1 0.17 12.0 0.1 1.5 1 0 0 1 1 1 0 FMN-binding domain AAA_25 PF13481.1 gi|385805043|ref|YP_005841443.1| - 0.089 12.1 0.0 0.17 11.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain