# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|385802383|ref|YP_005838783.1| - 1.5e-24 85.8 0.3 3.6e-24 84.5 0.3 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|385802383|ref|YP_005838783.1| - 5.2e-10 40.0 0.5 1.8e-09 38.2 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|385802383|ref|YP_005838783.1| - 6e-09 36.4 0.1 0.00063 20.2 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|385802383|ref|YP_005838783.1| - 3.1e-08 34.0 2.2 5.1e-06 26.8 0.9 2.8 2 1 0 2 2 2 1 AAA domain TniB PF05621.11 gi|385802383|ref|YP_005838783.1| - 0.00021 20.8 0.4 0.0041 16.6 0.1 2.6 3 0 0 3 3 2 1 Bacterial TniB protein Sigma54_activat PF00158.26 gi|385802383|ref|YP_005838783.1| - 0.0021 17.8 0.0 0.0045 16.7 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|385802383|ref|YP_005838783.1| - 0.003 16.7 0.0 0.0074 15.5 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_18 PF13238.6 gi|385802383|ref|YP_005838783.1| - 0.0045 17.5 0.1 0.016 15.8 0.1 2.1 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|385802383|ref|YP_005838783.1| - 0.0067 15.6 0.0 0.011 14.9 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain AAA_2 PF07724.14 gi|385802383|ref|YP_005838783.1| - 0.0087 16.2 0.0 0.24 11.5 0.0 2.4 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) T2SSE PF00437.20 gi|385802383|ref|YP_005838783.1| - 0.0088 15.1 0.0 0.016 14.3 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein ATPase_2 PF01637.18 gi|385802383|ref|YP_005838783.1| - 0.009 15.9 0.4 0.052 13.5 0.4 2.1 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea RuvB_N PF05496.12 gi|385802383|ref|YP_005838783.1| - 0.012 15.4 0.0 0.033 13.9 0.0 1.8 2 0 0 2 2 1 0 Holliday junction DNA helicase RuvB P-loop domain DNA_pol3_delta2 PF13177.6 gi|385802383|ref|YP_005838783.1| - 0.016 15.0 0.9 0.16 11.7 0.3 2.5 2 1 0 2 2 2 0 DNA polymerase III, delta subunit ABC_tran PF00005.27 gi|385802383|ref|YP_005838783.1| - 0.016 15.7 0.3 0.06 13.9 0.0 2.1 2 0 0 2 2 1 0 ABC transporter TIP49 PF06068.13 gi|385802383|ref|YP_005838783.1| - 0.033 13.4 0.0 0.068 12.4 0.0 1.5 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_32 PF13654.6 gi|385802383|ref|YP_005838783.1| - 0.04 12.7 0.8 2.7 6.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|385802383|ref|YP_005838783.1| - 0.043 13.3 0.0 0.075 12.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_assoc_2 PF16193.5 gi|385802383|ref|YP_005838783.1| - 0.047 14.0 1.6 0.094 13.1 0.3 2.1 2 0 0 2 2 2 0 AAA C-terminal domain RNA_helicase PF00910.22 gi|385802383|ref|YP_005838783.1| - 0.11 12.9 0.0 0.31 11.5 0.0 1.9 1 0 0 1 1 1 0 RNA helicase DEAD PF00270.29 gi|385802383|ref|YP_005838783.1| - 0.12 12.1 2.7 10 5.8 0.7 2.8 2 1 1 3 3 3 0 DEAD/DEAH box helicase TsaE PF02367.17 gi|385802383|ref|YP_005838783.1| - 0.13 12.2 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MutS_III PF05192.18 gi|385802383|ref|YP_005838783.1| - 4.4 7.5 9.6 15 5.7 7.5 2.4 1 1 0 1 1 1 0 MutS domain III Peptidase_S24 PF00717.23 gi|385802384|ref|YP_005838784.1| - 0.0005 20.0 0.0 0.00091 19.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase S24-like DNA_pol_E_B PF04042.16 gi|385802385|ref|YP_005838785.1| - 2.6e-12 46.6 0.0 4.7e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.7 gi|385802385|ref|YP_005838785.1| - 2.7e-11 44.0 2.5 5.8e-11 42.9 2.5 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|385802385|ref|YP_005838785.1| - 4.6e-08 33.8 1.9 1.2e-07 32.5 1.9 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.25 gi|385802385|ref|YP_005838785.1| - 0.019 15.0 0.0 0.049 13.6 0.0 1.6 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain Colicin_M PF14859.6 gi|385802385|ref|YP_005838785.1| - 0.023 13.8 0.2 0.037 13.1 0.2 1.2 1 0 0 1 1 1 0 Colicin M Ndc1_Nup PF09531.10 gi|385802385|ref|YP_005838785.1| - 0.11 11.2 2.5 0.14 10.8 2.5 1.1 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup AA_kinase PF00696.28 gi|385802387|ref|YP_005838787.1| - 4.3e-45 154.2 2.4 4.3e-45 154.2 2.4 1.5 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.6 gi|385802387|ref|YP_005838787.1| - 1.1e-14 54.0 3.2 8.5e-08 31.9 0.1 2.8 3 0 0 3 3 3 2 ACT domain ACT PF01842.25 gi|385802387|ref|YP_005838787.1| - 6.3e-09 35.5 1.0 5.9e-06 26.0 0.1 2.7 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.6 gi|385802387|ref|YP_005838787.1| - 1.4e-05 25.6 1.1 0.14 12.8 0.0 2.8 1 1 2 3 3 3 2 ACT domain ACT_6 PF13740.6 gi|385802387|ref|YP_005838787.1| - 0.052 13.5 0.3 0.76 9.8 0.1 2.5 2 1 0 2 2 2 0 ACT domain IMP_cyclohyd PF07826.11 gi|385802388|ref|YP_005838788.1| - 1.1e-63 214.4 0.5 1.3e-63 214.1 0.5 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein CGI-121 PF08617.10 gi|385802389|ref|YP_005838789.1| - 1.7e-09 38.0 0.0 2e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 NodS PF05401.11 gi|385802389|ref|YP_005838789.1| - 0.016 14.8 0.0 0.025 14.2 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) DEAD PF00270.29 gi|385802390|ref|YP_005838790.1| - 8.5e-21 74.5 0.0 1.6e-20 73.6 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|385802390|ref|YP_005838790.1| - 3.7e-07 30.5 0.0 5.9e-06 26.6 0.0 2.4 1 1 0 1 1 1 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|385802390|ref|YP_005838790.1| - 6.6e-07 29.8 0.4 2.3e-06 28.1 0.4 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|385802390|ref|YP_005838790.1| - 0.0073 16.1 0.0 0.02 14.7 0.0 1.8 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH PF00633.23 gi|385802390|ref|YP_005838790.1| - 0.051 13.5 0.0 1.2 9.1 0.0 2.9 2 0 0 2 2 2 0 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|385802390|ref|YP_005838790.1| - 0.15 12.5 0.1 0.55 10.7 0.0 2.0 2 0 0 2 2 2 0 IMS family HHH motif AAA PF00004.29 gi|385802393|ref|YP_005838793.1| - 1.3e-60 203.6 0.0 4.5e-46 156.5 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|385802393|ref|YP_005838793.1| - 1.7e-14 53.3 4.7 6.8e-11 41.8 0.3 2.5 2 0 0 2 2 2 2 AAA+ lid domain AAA_5 PF07728.14 gi|385802393|ref|YP_005838793.1| - 4.4e-12 46.2 0.0 1.5e-07 31.5 0.0 2.7 2 1 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|385802393|ref|YP_005838793.1| - 1.7e-11 44.8 3.6 1.4e-05 25.6 0.2 3.7 2 2 1 3 3 3 2 AAA ATPase domain AAA_2 PF07724.14 gi|385802393|ref|YP_005838793.1| - 4.9e-10 39.8 0.0 0.00012 22.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.17 gi|385802393|ref|YP_005838793.1| - 9.7e-10 38.1 0.1 3.4e-09 36.3 0.1 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.6 gi|385802393|ref|YP_005838793.1| - 4.2e-08 33.6 0.1 0.0061 16.8 0.0 3.5 2 1 1 3 3 3 2 AAA domain NACHT PF05729.12 gi|385802393|ref|YP_005838793.1| - 1.9e-07 31.1 3.2 0.026 14.4 0.8 3.7 3 1 0 3 3 3 2 NACHT domain RuvB_N PF05496.12 gi|385802393|ref|YP_005838793.1| - 3.4e-07 30.1 0.0 0.00014 21.6 0.0 2.9 3 1 0 3 3 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 gi|385802393|ref|YP_005838793.1| - 2.4e-06 27.8 0.0 0.0013 18.9 0.0 2.7 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.13 gi|385802393|ref|YP_005838793.1| - 8.6e-06 25.1 0.0 0.0094 15.1 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF815) TsaE PF02367.17 gi|385802393|ref|YP_005838793.1| - 1.1e-05 25.4 0.0 0.097 12.7 0.0 2.6 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_3 PF07726.11 gi|385802393|ref|YP_005838793.1| - 1.2e-05 25.2 0.0 0.13 12.1 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|385802393|ref|YP_005838793.1| - 1.3e-05 25.0 0.0 0.026 14.3 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_19 PF13245.6 gi|385802393|ref|YP_005838793.1| - 3.7e-05 24.1 2.1 0.015 15.6 0.2 2.6 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|385802393|ref|YP_005838793.1| - 5.5e-05 22.9 0.0 0.13 12.0 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.6 gi|385802393|ref|YP_005838793.1| - 6.2e-05 22.8 0.0 0.038 13.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|385802393|ref|YP_005838793.1| - 6.7e-05 22.5 0.0 0.15 11.5 0.0 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region Bac_DnaA PF00308.18 gi|385802393|ref|YP_005838793.1| - 6.8e-05 22.8 0.0 0.03 14.2 0.0 2.8 3 1 0 3 3 3 1 Bacterial dnaA protein AAA_14 PF13173.6 gi|385802393|ref|YP_005838793.1| - 7.7e-05 22.7 0.0 0.042 13.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|385802393|ref|YP_005838793.1| - 0.00011 22.0 0.5 0.54 9.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.12 gi|385802393|ref|YP_005838793.1| - 0.0005 19.4 0.1 0.35 10.1 0.0 2.5 2 0 0 2 2 2 1 Zeta toxin Mg_chelatase PF01078.21 gi|385802393|ref|YP_005838793.1| - 0.00082 18.8 0.1 0.0081 15.6 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|385802393|ref|YP_005838793.1| - 0.0011 19.6 0.0 0.094 13.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|385802393|ref|YP_005838793.1| - 0.0011 19.3 0.0 0.37 11.2 0.0 2.9 3 0 0 3 3 2 1 RNA helicase AAA_28 PF13521.6 gi|385802393|ref|YP_005838793.1| - 0.0028 17.9 0.0 0.026 14.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|385802393|ref|YP_005838793.1| - 0.0053 17.3 0.1 2.7 8.5 0.0 2.9 2 1 0 2 2 2 1 ABC transporter AAA_25 PF13481.6 gi|385802393|ref|YP_005838793.1| - 0.0062 16.1 4.9 0.042 13.4 0.7 3.4 2 2 1 3 3 3 1 AAA domain TIP49 PF06068.13 gi|385802393|ref|YP_005838793.1| - 0.011 15.0 0.0 0.13 11.4 0.0 2.2 2 0 0 2 2 2 0 TIP49 P-loop domain DAP3 PF10236.9 gi|385802393|ref|YP_005838793.1| - 0.027 13.6 0.0 5.9 6.0 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 ATPase PF06745.13 gi|385802393|ref|YP_005838793.1| - 0.036 13.4 1.1 3.4 7.0 0.0 3.4 2 1 1 3 3 3 0 KaiC RsgA_GTPase PF03193.16 gi|385802393|ref|YP_005838793.1| - 0.04 13.8 0.1 1.1 9.1 0.0 2.8 2 1 1 3 3 3 0 RsgA GTPase AAA_29 PF13555.6 gi|385802393|ref|YP_005838793.1| - 0.04 13.7 0.0 6.7 6.5 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain TniB PF05621.11 gi|385802393|ref|YP_005838793.1| - 0.093 12.1 0.0 5.8 6.3 0.0 2.4 2 0 0 2 2 2 0 Bacterial TniB protein NTPase_1 PF03266.15 gi|385802393|ref|YP_005838793.1| - 0.1 12.5 0.0 4 7.3 0.0 2.4 2 0 0 2 2 2 0 NTPase PhoH PF02562.16 gi|385802393|ref|YP_005838793.1| - 0.11 11.9 0.2 0.95 8.9 0.1 2.3 2 0 0 2 2 2 0 PhoH-like protein ATPase_2 PF01637.18 gi|385802393|ref|YP_005838793.1| - 0.13 12.2 0.0 6.5 6.6 0.0 2.6 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea AFG1_ATPase PF03969.16 gi|385802393|ref|YP_005838793.1| - 0.14 11.0 0.0 13 4.6 0.0 2.3 2 0 0 2 2 2 0 AFG1-like ATPase NB-ARC PF00931.22 gi|385802393|ref|YP_005838793.1| - 0.16 11.2 0.0 3 7.0 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain Parvo_NS1 PF01057.17 gi|385802393|ref|YP_005838793.1| - 0.16 11.0 0.0 0.27 10.3 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Gly_reductase PF09338.11 gi|385802393|ref|YP_005838793.1| - 0.17 10.2 0.1 0.29 9.5 0.1 1.3 1 0 0 1 1 1 0 Glycine/sarcosine/betaine reductase component B subunits Hpr_kinase_C PF07475.12 gi|385802393|ref|YP_005838793.1| - 0.18 11.3 0.0 2.8 7.4 0.1 2.2 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain DUF371 PF04027.13 gi|385802393|ref|YP_005838793.1| - 0.41 10.6 2.9 14 5.6 0.1 3.0 2 1 0 3 3 3 0 Domain of unknown function (DUF371) OrfB_IS605 PF01385.19 gi|385802394|ref|YP_005838794.1| - 2.8e-23 82.4 0.2 8e-23 80.9 0.0 1.8 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|385802394|ref|YP_005838794.1| - 7e-22 77.1 1.4 7e-22 77.1 1.4 2.4 2 0 0 2 2 2 1 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|385802394|ref|YP_005838794.1| - 0.002 18.4 0.8 0.0061 16.8 0.8 1.8 1 0 0 1 1 1 1 C1 domain A2L_zn_ribbon PF08792.10 gi|385802394|ref|YP_005838794.1| - 0.097 12.4 2.5 0.27 11.0 2.5 1.8 1 0 0 1 1 1 0 A2L zinc ribbon domain Topoisom_I PF01028.20 gi|385802394|ref|YP_005838794.1| - 0.11 11.7 0.0 0.21 10.8 0.0 1.4 1 1 0 1 1 1 0 Eukaryotic DNA topoisomerase I, catalytic core TF_Zn_Ribbon PF08271.12 gi|385802394|ref|YP_005838794.1| - 0.12 11.9 5.9 0.12 11.9 4.3 1.9 2 0 0 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|385802394|ref|YP_005838794.1| - 0.32 11.0 5.0 0.59 10.1 2.7 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Phage_holin_3_6 PF07332.11 gi|385802395|ref|YP_005838795.1| - 0.02 14.9 2.2 0.023 14.7 2.2 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Bac_rhodopsin PF01036.18 gi|385802396|ref|YP_005838796.1| - 2.9e-66 223.3 19.9 3.3e-66 223.1 19.9 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein IncE PF17627.2 gi|385802396|ref|YP_005838796.1| - 0.22 11.5 0.2 0.22 11.5 0.2 2.1 2 0 0 2 2 2 0 Inclusion membrane protein E SlyX PF04102.12 gi|385802397|ref|YP_005838797.1| - 0.0011 19.6 0.1 0.0018 18.9 0.1 1.3 1 0 0 1 1 1 1 SlyX TF_Zn_Ribbon PF08271.12 gi|385802397|ref|YP_005838797.1| - 0.0018 17.7 0.8 0.09 12.3 0.8 2.6 1 1 1 2 2 2 2 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|385802397|ref|YP_005838797.1| - 0.0055 16.8 0.9 2 8.6 0.0 2.5 2 0 0 2 2 2 2 Zinc ribbon domain C1_1 PF00130.22 gi|385802397|ref|YP_005838797.1| - 0.0081 16.0 0.2 0.011 15.6 0.2 1.2 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) IBR PF01485.21 gi|385802397|ref|YP_005838797.1| - 0.013 15.8 0.0 0.021 15.0 0.0 1.4 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain Fib_alpha PF08702.10 gi|385802397|ref|YP_005838797.1| - 0.014 15.6 0.6 0.019 15.1 0.6 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family ADK_lid PF05191.14 gi|385802397|ref|YP_005838797.1| - 0.017 15.1 2.6 1.2 9.2 0.3 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid DUF35_N PF12172.8 gi|385802397|ref|YP_005838797.1| - 0.046 13.6 4.2 0.41 10.6 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DivIC PF04977.15 gi|385802397|ref|YP_005838797.1| - 0.061 13.1 1.1 0.097 12.5 1.1 1.2 1 0 0 1 1 1 0 Septum formation initiator DUF327 PF03885.13 gi|385802397|ref|YP_005838797.1| - 0.14 12.1 2.3 0.19 11.7 2.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF327) DUF4140 PF13600.6 gi|385802397|ref|YP_005838797.1| - 0.18 12.2 4.8 0.23 11.9 4.8 1.2 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Rubredoxin_2 PF18073.1 gi|385802397|ref|YP_005838797.1| - 0.29 10.9 3.0 7.5 6.4 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-C2H2 PF00096.26 gi|385802397|ref|YP_005838797.1| - 0.31 11.6 2.9 2.3 8.9 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zinc_ribbon_4 PF13717.6 gi|385802397|ref|YP_005838797.1| - 0.32 11.0 0.5 0.32 11.0 0.5 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Pox_RNA_Pol_19 PF05320.12 gi|385802397|ref|YP_005838797.1| - 0.52 10.3 4.0 0.69 9.9 4.0 1.1 1 0 0 1 1 1 0 Poxvirus DNA-directed RNA polymerase 19 kDa subunit NESP55 PF06390.12 gi|385802397|ref|YP_005838797.1| - 2.6 7.6 11.1 3 7.4 11.1 1.1 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) Trypan_PARP PF05887.11 gi|385802397|ref|YP_005838797.1| - 2.7 8.0 10.2 3.7 7.6 10.2 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) zinc_ribbon_5 PF13719.6 gi|385802397|ref|YP_005838797.1| - 2.7 7.8 5.3 1 9.2 0.4 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Fer4_15 PF13459.6 gi|385802398|ref|YP_005838798.1| - 6e-19 68.5 3.0 7.1e-19 68.3 3.0 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|385802398|ref|YP_005838798.1| - 5.5e-05 23.6 1.8 0.00012 22.5 1.8 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4 PF00037.27 gi|385802398|ref|YP_005838798.1| - 0.031 14.1 1.1 0.47 10.4 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Bac_rhodopsin PF01036.18 gi|385802399|ref|YP_005838799.1| - 3.7e-62 209.8 19.2 4.1e-62 209.7 19.2 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein DUF2070 PF09843.9 gi|385802400|ref|YP_005838800.1| - 0.04 12.2 6.6 0.052 11.8 6.6 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) BCD PF15461.6 gi|385802401|ref|YP_005838801.1| - 2.6e-79 266.5 22.4 3.3e-79 266.2 22.4 1.1 1 0 0 1 1 1 1 Beta-carotene 15,15'-dioxygenase KASH PF10541.9 gi|385802401|ref|YP_005838801.1| - 0.0072 16.6 0.8 0.59 10.4 0.2 2.8 2 0 0 2 2 2 2 Nuclear envelope localisation domain ERCC4 PF02732.15 gi|385802402|ref|YP_005838802.1| - 2.9e-23 82.8 0.1 1.1e-22 81.0 0.0 2.1 2 0 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.31 gi|385802402|ref|YP_005838802.1| - 1.4e-21 76.9 0.0 6e-21 74.9 0.0 2.1 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|385802402|ref|YP_005838802.1| - 8e-16 58.3 0.0 2.5e-15 56.7 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|385802402|ref|YP_005838802.1| - 1e-12 48.4 0.0 2.8e-12 47.0 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.7 gi|385802402|ref|YP_005838802.1| - 1.5e-09 37.8 0.3 1e-08 35.1 0.1 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|385802402|ref|YP_005838802.1| - 1.8e-09 38.1 0.1 6.8e-09 36.2 0.1 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|385802402|ref|YP_005838802.1| - 1.9e-06 27.4 0.1 0.00069 19.4 0.1 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|385802402|ref|YP_005838802.1| - 0.034 14.7 0.1 0.51 11.0 0.0 2.8 1 1 1 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold MEDS PF14417.6 gi|385802402|ref|YP_005838802.1| - 0.077 12.8 0.2 5.5 6.8 0.0 2.8 2 0 0 2 2 2 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain COG5 PF10392.9 gi|385802402|ref|YP_005838802.1| - 0.12 12.5 2.2 0.97 9.6 0.4 3.0 2 0 0 2 2 2 0 Golgi transport complex subunit 5 DUF4618 PF15397.6 gi|385802402|ref|YP_005838802.1| - 1.5 8.2 11.5 0.32 10.4 0.7 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4618) Arc_PepC_II PF06847.11 gi|385802403|ref|YP_005838803.1| - 2.6e-11 43.9 0.0 2.3e-09 37.7 0.0 2.6 2 0 0 2 2 2 2 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|385802403|ref|YP_005838803.1| - 1.7e-08 34.8 8.9 1.7e-08 34.8 8.9 1.8 2 0 0 2 2 2 1 Type IV leader peptidase family PRA-CH PF01502.18 gi|385802404|ref|YP_005838804.1| - 4e-35 119.5 0.2 5.7e-35 119.0 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase PGM_PMM_I PF02878.16 gi|385802406|ref|YP_005838806.1| - 2.9e-35 121.0 0.0 5.6e-35 120.1 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|385802406|ref|YP_005838806.1| - 2.9e-26 92.1 0.0 6.3e-26 91.0 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|385802406|ref|YP_005838806.1| - 6.5e-15 55.1 0.0 1.8e-14 53.7 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|385802406|ref|YP_005838806.1| - 6.8e-12 45.6 0.0 1.6e-11 44.4 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III His_biosynth PF00977.21 gi|385802407|ref|YP_005838807.1| - 9.5e-75 251.0 5.0 1.1e-74 250.8 5.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 gi|385802407|ref|YP_005838807.1| - 4.6e-12 46.0 7.8 1.6e-07 31.1 1.4 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase Dus PF01207.17 gi|385802407|ref|YP_005838807.1| - 1.6e-11 43.9 0.6 1.5e-05 24.3 0.1 2.3 2 1 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|385802407|ref|YP_005838807.1| - 3.9e-08 32.9 10.7 6.7e-06 25.6 1.3 2.1 1 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|385802407|ref|YP_005838807.1| - 1.2e-07 31.2 1.3 0.00013 21.2 0.4 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase IGPS PF00218.21 gi|385802407|ref|YP_005838807.1| - 7.5e-05 22.0 0.2 0.065 12.4 0.1 2.7 2 1 1 3 3 3 2 Indole-3-glycerol phosphate synthase Trp_syntA PF00290.20 gi|385802407|ref|YP_005838807.1| - 0.0011 17.9 1.1 0.31 9.8 0.1 2.2 2 0 0 2 2 2 2 Tryptophan synthase alpha chain TMP-TENI PF02581.17 gi|385802407|ref|YP_005838807.1| - 0.0015 17.9 4.0 0.22 10.8 0.6 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase G3P_antiterm PF04309.12 gi|385802407|ref|YP_005838807.1| - 0.0033 16.9 1.5 0.4 10.1 0.2 2.2 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator IMPDH PF00478.25 gi|385802407|ref|YP_005838807.1| - 0.0084 15.1 5.7 0.26 10.2 1.3 2.5 2 1 1 3 3 3 2 IMP dehydrogenase / GMP reductase domain NanE PF04131.14 gi|385802407|ref|YP_005838807.1| - 0.026 13.7 0.9 6 6.0 0.1 2.4 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.18 gi|385802407|ref|YP_005838807.1| - 0.34 9.9 10.7 1.4 7.9 2.2 2.1 2 0 0 2 2 2 0 FMN-dependent dehydrogenase IGPD PF00475.18 gi|385802408|ref|YP_005838808.1| - 1e-56 191.2 0.8 1.4e-56 190.8 0.8 1.2 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase ACT PF01842.25 gi|385802409|ref|YP_005838809.1| - 4.5e-07 29.5 0.2 1.6e-06 27.7 0.2 2.0 1 1 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|385802409|ref|YP_005838809.1| - 0.00068 19.4 0.1 0.002 17.9 0.0 1.7 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|385802409|ref|YP_005838809.1| - 0.059 14.0 0.4 1.5 9.5 0.1 2.4 2 0 0 2 2 2 0 ACT domain ACT_6 PF13740.6 gi|385802409|ref|YP_005838809.1| - 0.11 12.4 0.0 0.28 11.2 0.0 1.7 1 0 0 1 1 1 0 ACT domain UPF0029 PF01205.19 gi|385802410|ref|YP_005838810.1| - 9.1e-29 99.9 0.0 1.4e-28 99.3 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.11 gi|385802410|ref|YP_005838810.1| - 4.1e-11 42.6 0.4 1.9e-10 40.4 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) EFG_C PF00679.24 gi|385802410|ref|YP_005838810.1| - 0.003 17.6 0.1 0.0092 16.0 0.0 1.8 2 0 0 2 2 2 1 Elongation factor G C-terminus UPRTase PF14681.6 gi|385802411|ref|YP_005838811.1| - 1.1e-45 155.6 0.0 1.3e-45 155.4 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|385802411|ref|YP_005838811.1| - 2.5e-07 30.4 0.1 3.5e-07 29.9 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain CbtB PF09489.10 gi|385802412|ref|YP_005838812.1| - 1.1 9.4 3.8 0.46 10.6 0.5 1.8 1 1 1 2 2 2 0 Probable cobalt transporter subunit (CbtB) DUF202 PF02656.15 gi|385802413|ref|YP_005838813.1| - 3 8.3 9.1 3.4 8.2 2.3 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF202) zinc_ribbon_9 PF14369.6 gi|385802414|ref|YP_005838814.1| - 5.2e-07 29.8 1.4 8e-07 29.2 1.4 1.4 1 0 0 1 1 1 1 zinc-ribbon zf_UBZ PF18439.1 gi|385802414|ref|YP_005838814.1| - 0.00078 19.0 1.5 0.054 13.1 0.1 2.2 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger HypA PF01155.19 gi|385802414|ref|YP_005838814.1| - 0.0054 16.7 0.2 0.0055 16.7 0.2 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|385802414|ref|YP_005838814.1| - 0.0064 16.6 1.2 0.011 15.9 1.2 1.4 1 0 0 1 1 1 1 Zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|385802414|ref|YP_005838814.1| - 0.1 12.6 4.9 4.7 7.3 1.3 1.9 1 1 0 2 2 2 0 zinc-ribbons DUF2197 PF09963.9 gi|385802414|ref|YP_005838814.1| - 0.12 12.6 1.6 0.34 11.2 0.1 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) cobW PF02492.19 gi|385802415|ref|YP_005838815.1| - 7.4e-53 178.8 0.6 1e-52 178.3 0.6 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 gi|385802415|ref|YP_005838815.1| - 1.7e-23 82.4 0.0 4.2e-23 81.1 0.0 1.7 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain RsgA_GTPase PF03193.16 gi|385802415|ref|YP_005838815.1| - 1.3e-05 25.2 2.1 0.01 15.8 0.1 2.7 2 1 1 3 3 3 2 RsgA GTPase GTP_EFTU PF00009.27 gi|385802415|ref|YP_005838815.1| - 0.00032 20.3 5.2 0.21 11.1 1.8 2.7 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain T2SSE PF00437.20 gi|385802415|ref|YP_005838815.1| - 0.0033 16.5 0.3 0.0066 15.5 0.3 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein TrwB_AAD_bind PF10412.9 gi|385802415|ref|YP_005838815.1| - 0.0043 16.0 0.0 0.009 15.0 0.0 1.5 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain MeaB PF03308.16 gi|385802415|ref|YP_005838815.1| - 0.0057 15.7 1.4 1.4 7.8 0.1 2.6 2 1 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB Zeta_toxin PF06414.12 gi|385802415|ref|YP_005838815.1| - 0.0089 15.3 0.0 0.018 14.3 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.6 gi|385802415|ref|YP_005838815.1| - 0.011 16.0 0.0 0.029 14.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|385802415|ref|YP_005838815.1| - 0.015 15.7 0.3 0.037 14.4 0.2 1.8 1 1 0 1 1 1 0 AAA ATPase domain TsaE PF02367.17 gi|385802415|ref|YP_005838815.1| - 0.023 14.7 1.3 0.035 14.1 0.0 2.0 3 0 0 3 3 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_33 PF13671.6 gi|385802415|ref|YP_005838815.1| - 0.024 14.8 0.1 0.08 13.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|385802415|ref|YP_005838815.1| - 0.033 14.4 0.2 0.098 12.9 0.0 1.9 2 0 0 2 2 1 0 AAA domain AAA_29 PF13555.6 gi|385802415|ref|YP_005838815.1| - 0.034 13.9 0.4 0.14 11.9 0.2 2.1 2 0 0 2 2 2 0 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|385802415|ref|YP_005838815.1| - 0.041 13.8 0.8 0.29 11.0 0.1 2.2 2 0 0 2 2 2 0 NTPase SRPRB PF09439.10 gi|385802415|ref|YP_005838815.1| - 0.045 13.2 0.2 0.13 11.7 0.0 1.8 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit KAP_NTPase PF07693.14 gi|385802415|ref|YP_005838815.1| - 0.077 12.2 0.0 0.29 10.3 0.0 2.0 2 1 0 2 2 2 0 KAP family P-loop domain CbiA PF01656.23 gi|385802415|ref|YP_005838815.1| - 0.081 13.0 0.2 0.27 11.3 0.2 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain ABC_tran PF00005.27 gi|385802415|ref|YP_005838815.1| - 0.088 13.3 2.1 0.092 13.3 0.0 2.0 2 1 0 2 2 2 0 ABC transporter MMR_HSR1 PF01926.23 gi|385802415|ref|YP_005838815.1| - 0.097 12.8 0.6 0.6 10.2 0.0 2.3 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|385802415|ref|YP_005838815.1| - 0.12 13.0 1.5 0.19 12.3 0.0 2.0 3 0 0 3 3 2 0 AAA domain AAA_14 PF13173.6 gi|385802415|ref|YP_005838815.1| - 0.12 12.4 0.0 0.32 11.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|385802415|ref|YP_005838815.1| - 0.15 12.0 0.0 0.43 10.5 0.0 1.8 1 0 0 1 1 1 0 NACHT domain AAA_23 PF13476.6 gi|385802415|ref|YP_005838815.1| - 0.46 11.0 2.9 0.35 11.3 0.5 1.9 2 0 0 2 2 2 0 AAA domain Arf PF00025.21 gi|385802415|ref|YP_005838815.1| - 1.4 8.3 4.9 8.4 5.8 0.1 2.9 2 1 0 2 2 2 0 ADP-ribosylation factor family ArsA_ATPase PF02374.15 gi|385802417|ref|YP_005838817.1| - 1.1e-71 241.6 0.0 1.4e-71 241.2 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|385802417|ref|YP_005838817.1| - 6.5e-11 42.5 0.0 9.9e-11 41.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|385802417|ref|YP_005838817.1| - 3.3e-07 30.4 0.0 7.5e-07 29.3 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|385802417|ref|YP_005838817.1| - 2.2e-05 24.1 0.2 0.0012 18.4 0.4 2.4 2 1 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|385802417|ref|YP_005838817.1| - 0.038 13.4 0.0 0.077 12.4 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 gi|385802417|ref|YP_005838817.1| - 0.055 13.1 5.0 0.056 13.0 1.8 2.5 2 1 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|385802417|ref|YP_005838817.1| - 0.099 12.3 0.2 0.46 10.1 0.1 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_18 PF13238.6 gi|385802417|ref|YP_005838817.1| - 0.1 13.2 0.3 0.56 10.8 0.0 2.4 2 2 1 3 3 3 0 AAA domain ATPase PF06745.13 gi|385802417|ref|YP_005838817.1| - 0.11 11.8 0.1 0.19 11.0 0.1 1.6 1 1 0 1 1 1 0 KaiC CBP_BcsQ PF06564.12 gi|385802417|ref|YP_005838817.1| - 0.18 11.3 0.0 0.24 10.8 0.0 1.4 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ AAA_33 PF13671.6 gi|385802417|ref|YP_005838817.1| - 0.24 11.6 0.8 0.61 10.2 0.1 2.1 2 1 0 2 2 2 0 AAA domain CstA PF02554.14 gi|385802418|ref|YP_005838818.1| - 1.5e-108 363.1 21.3 1.5e-108 363.1 21.3 1.9 2 0 0 2 2 2 1 Carbon starvation protein CstA CstA_5TM PF13722.6 gi|385802418|ref|YP_005838818.1| - 1.3e-29 102.9 3.1 1.3e-29 102.9 3.1 4.0 5 0 0 5 5 5 1 5TM C-terminal transporter carbon starvation CstA Cupin_2 PF07883.11 gi|385802420|ref|YP_005838820.1| - 5.4e-07 29.2 0.3 1.5e-06 27.8 0.2 1.8 2 0 0 2 2 2 1 Cupin domain MannoseP_isomer PF01050.18 gi|385802420|ref|YP_005838820.1| - 0.026 14.4 0.0 0.031 14.2 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase TrmB PF01978.19 gi|385802423|ref|YP_005838823.1| - 9.8e-15 54.2 0.0 1.3e-14 53.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|385802423|ref|YP_005838823.1| - 4e-06 26.6 0.2 6.1e-06 26.0 0.2 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|385802423|ref|YP_005838823.1| - 4.1e-05 23.4 0.0 7.7e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|385802423|ref|YP_005838823.1| - 0.0024 17.7 0.2 0.0041 16.9 0.2 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|385802423|ref|YP_005838823.1| - 0.0036 16.8 0.0 0.0054 16.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|385802423|ref|YP_005838823.1| - 0.011 15.6 0.1 0.016 15.0 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|385802423|ref|YP_005838823.1| - 0.019 15.5 0.1 0.034 14.6 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|385802423|ref|YP_005838823.1| - 0.019 14.8 0.0 0.024 14.5 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_Crp_2 PF13545.6 gi|385802423|ref|YP_005838823.1| - 0.027 14.4 0.3 0.047 13.7 0.4 1.4 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Phage_rep_org_N PF09681.10 gi|385802423|ref|YP_005838823.1| - 0.1 12.5 0.0 0.2 11.6 0.0 1.5 1 1 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) GntR PF00392.21 gi|385802423|ref|YP_005838823.1| - 0.18 11.5 0.4 0.32 10.7 0.4 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family PALP PF00291.25 gi|385802424|ref|YP_005838824.1| - 2.5e-71 240.5 1.0 3e-71 240.3 1.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme 2-Hacid_dh_C PF02826.19 gi|385802425|ref|YP_005838825.1| - 2.2e-57 193.3 0.0 3.9e-57 192.5 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|385802425|ref|YP_005838825.1| - 8.4e-35 119.4 0.6 3.9e-34 117.2 1.3 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 gi|385802425|ref|YP_005838825.1| - 4.3e-06 26.4 0.1 1.7e-05 24.5 0.1 2.2 1 0 0 1 1 1 1 ACT domain NAD_binding_2 PF03446.15 gi|385802425|ref|YP_005838825.1| - 0.00045 20.4 1.3 0.012 15.8 0.0 2.9 3 0 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_C PF03720.15 gi|385802425|ref|YP_005838825.1| - 0.011 16.2 0.0 0.033 14.6 0.0 1.8 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TrkA_N PF02254.18 gi|385802425|ref|YP_005838825.1| - 0.029 14.6 0.0 0.093 13.0 0.0 1.9 1 0 0 1 1 1 0 TrkA-N domain IlvN PF07991.12 gi|385802425|ref|YP_005838825.1| - 0.03 13.9 0.0 0.084 12.4 0.0 1.8 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_7 PF13241.6 gi|385802425|ref|YP_005838825.1| - 0.083 13.3 0.0 0.24 11.9 0.0 1.8 1 0 0 1 1 1 0 Putative NAD(P)-binding HAD PF12710.7 gi|385802426|ref|YP_005838826.1| - 5.7e-20 72.5 0.2 6.9e-20 72.3 0.2 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|385802426|ref|YP_005838826.1| - 1.1e-13 51.9 2.1 2e-10 41.3 0.2 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|385802426|ref|YP_005838826.1| - 2.3e-12 47.2 0.6 3.5e-08 33.5 0.0 3.1 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|385802426|ref|YP_005838826.1| - 7.5e-06 26.1 0.2 0.0013 18.9 0.1 2.9 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|385802426|ref|YP_005838826.1| - 0.075 12.4 0.0 2 7.7 0.0 2.1 2 0 0 2 2 2 0 Putative Phosphatase NucS PF01939.16 gi|385802427|ref|YP_005838827.1| - 4.6e-08 32.7 0.0 7.7e-08 31.9 0.0 1.3 1 0 0 1 1 1 1 Endonuclease NucS zf-C4_Topoisom PF01396.19 gi|385802427|ref|YP_005838827.1| - 7.4e-07 28.9 2.3 7.7e-06 25.6 0.1 2.4 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger Auto_anti-p27 PF06677.12 gi|385802427|ref|YP_005838827.1| - 0.00021 21.4 10.1 0.013 15.7 0.4 3.4 3 0 0 3 3 3 2 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc-ribbons_6 PF07191.12 gi|385802427|ref|YP_005838827.1| - 0.038 14.0 3.5 0.086 12.8 3.5 1.6 1 0 0 1 1 1 0 zinc-ribbons zf-ribbon_3 PF13248.6 gi|385802427|ref|YP_005838827.1| - 0.24 10.9 6.7 4.2 6.9 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain Zn_ribbon_recom PF13408.6 gi|385802427|ref|YP_005838827.1| - 1.1 9.9 6.2 0.3 11.6 0.8 2.4 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-Mss51 PF13824.6 gi|385802427|ref|YP_005838827.1| - 1.8 8.7 6.1 2.4 8.3 0.1 3.0 3 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 DEAD PF00270.29 gi|385802428|ref|YP_005838828.1| - 1.7e-23 83.3 0.0 8.6e-23 81.0 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Sec63 PF02889.16 gi|385802428|ref|YP_005838828.1| - 1.2e-20 73.7 0.0 1.9e-20 73.1 0.0 1.3 1 0 0 1 1 1 1 Sec63 Brl domain ResIII PF04851.15 gi|385802428|ref|YP_005838828.1| - 3.5e-11 43.4 0.0 6e-11 42.6 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|385802428|ref|YP_005838828.1| - 2.1e-08 34.5 0.0 1.9e-07 31.4 0.0 2.5 2 1 0 2 2 2 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|385802428|ref|YP_005838828.1| - 4.3e-05 24.0 0.6 4.3e-05 24.0 0.6 2.4 3 0 0 3 3 3 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|385802428|ref|YP_005838828.1| - 0.099 12.5 0.0 0.38 10.6 0.0 2.0 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda tRNA_int_endo PF01974.17 gi|385802429|ref|YP_005838829.1| - 7e-29 99.7 0.1 2.5e-23 81.9 0.0 3.8 3 1 0 3 3 3 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|385802429|ref|YP_005838829.1| - 8.7e-22 76.6 0.0 4e-10 39.2 0.0 2.4 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain Peptidase_S32 PF05579.13 gi|385802429|ref|YP_005838829.1| - 0.003 16.8 0.1 0.0044 16.2 0.1 1.2 1 0 0 1 1 1 1 Equine arteritis virus serine endopeptidase S32 tRNA-synt_1b PF00579.25 gi|385802430|ref|YP_005838830.1| - 1.2e-41 143.0 0.0 2e-24 86.5 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) tRNA-synt_2d PF01409.20 gi|385802431|ref|YP_005838831.1| - 7.8e-80 267.9 0.0 1e-79 267.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.20 gi|385802431|ref|YP_005838831.1| - 0.00075 18.7 0.4 0.049 12.7 0.1 2.3 2 0 0 2 2 2 1 tRNA synthetases class II (D, K and N) DUF4364 PF14277.6 gi|385802431|ref|YP_005838831.1| - 0.0049 16.6 0.4 0.094 12.5 0.1 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4364) MarR PF01047.22 gi|385802431|ref|YP_005838831.1| - 0.012 15.5 0.0 0.038 13.9 0.0 1.9 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|385802431|ref|YP_005838831.1| - 0.018 15.3 0.0 0.048 14.0 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator tRNA_synthFbeta PF17759.1 gi|385802431|ref|YP_005838831.1| - 0.035 13.5 0.0 2.9 7.3 0.0 2.3 2 0 0 2 2 2 0 Phenylalanyl tRNA synthetase beta chain CLM domain HTH_45 PF14947.6 gi|385802431|ref|YP_005838831.1| - 0.076 13.0 0.1 0.61 10.1 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix PadR PF03551.14 gi|385802431|ref|YP_005838831.1| - 0.11 12.5 0.3 0.56 10.2 0.1 2.1 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family tRNA_synthFbeta PF17759.1 gi|385802432|ref|YP_005838832.1| - 4.4e-36 124.3 0.0 6.2e-36 123.8 0.0 1.2 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|385802432|ref|YP_005838832.1| - 1.4e-14 54.1 0.0 1.9e-13 50.5 0.0 2.6 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|385802432|ref|YP_005838832.1| - 9.3e-11 41.7 0.0 1.1e-09 38.2 0.0 2.1 1 1 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|385802432|ref|YP_005838832.1| - 5e-06 26.6 0.3 0.0047 17.1 0.0 3.4 3 1 0 3 3 3 2 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|385802432|ref|YP_005838832.1| - 0.024 14.1 0.0 0.04 13.4 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class II core domain (F) tRNA-synt_1 PF00133.22 gi|385802433|ref|YP_005838833.1| - 2.6e-121 405.8 0.1 6.4e-120 401.2 0.1 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|385802433|ref|YP_005838833.1| - 3.3e-28 98.5 0.0 7.3e-28 97.4 0.0 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|385802433|ref|YP_005838833.1| - 6.6e-22 77.8 0.5 4.4e-11 42.2 0.1 3.5 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|385802433|ref|YP_005838833.1| - 1.5e-05 24.5 0.0 0.014 14.8 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|385802433|ref|YP_005838833.1| - 6.9e-05 22.4 0.0 0.00022 20.8 0.0 1.8 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|385802433|ref|YP_005838833.1| - 0.00016 20.8 0.1 0.003 16.5 0.0 2.4 2 1 0 2 2 2 1 tRNA synthetases class I (K) Zn-ribbon_8 PF09723.10 gi|385802433|ref|YP_005838833.1| - 0.046 13.8 3.3 0.96 9.6 0.6 2.9 2 0 0 2 2 2 0 Zinc ribbon domain DZR PF12773.7 gi|385802433|ref|YP_005838833.1| - 0.062 13.3 0.4 2.8 8.1 0.1 2.4 2 0 0 2 2 2 0 Double zinc ribbon SpecificRecomb PF10136.9 gi|385802433|ref|YP_005838833.1| - 0.11 10.8 0.1 0.15 10.3 0.1 1.1 1 0 0 1 1 1 0 Site-specific recombinase DHO_dh PF01180.21 gi|385802434|ref|YP_005838834.1| - 2.6e-82 276.3 0.0 3.1e-82 276.1 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.15 gi|385802434|ref|YP_005838834.1| - 7.4e-08 32.1 0.9 2.5e-07 30.4 0.9 1.7 1 1 0 1 1 1 1 Nitronate monooxygenase Pantoate_transf PF02548.15 gi|385802434|ref|YP_005838834.1| - 0.16 11.3 0.5 0.34 10.3 0.1 1.6 2 0 0 2 2 2 0 Ketopantoate hydroxymethyltransferase SymE_toxin PF08845.10 gi|385802435|ref|YP_005838835.1| - 0.0064 16.5 0.0 0.0072 16.4 0.0 1.2 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system MazE_antitoxin PF04014.18 gi|385802435|ref|YP_005838835.1| - 0.023 14.7 0.1 0.034 14.1 0.1 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin MC1 PF05854.11 gi|385802436|ref|YP_005838836.1| - 1.4e-39 134.2 0.2 1.7e-39 134.0 0.2 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 AMMECR1 PF01871.17 gi|385802438|ref|YP_005838838.1| - 3.9e-39 133.9 0.0 4.4e-39 133.8 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 QRPTase_C PF01729.19 gi|385802439|ref|YP_005838839.1| - 2.6e-19 69.6 0.0 3.8e-19 69.1 0.0 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain Peptidase_M91 PF14891.6 gi|385802440|ref|YP_005838840.1| - 0.028 14.8 0.1 0.064 13.6 0.1 1.6 1 0 0 1 1 1 0 Effector protein Peptidase_M76 PF09768.9 gi|385802440|ref|YP_005838840.1| - 0.11 12.3 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Peptidase M76 family Isochorismatase PF00857.20 gi|385802441|ref|YP_005838841.1| - 1.7e-50 171.6 0.1 1.9e-50 171.5 0.1 1.0 1 0 0 1 1 1 1 Isochorismatase family Amidohydro_1 PF01979.20 gi|385802442|ref|YP_005838842.1| - 1.8e-23 83.5 0.2 5.4e-23 81.9 0.2 1.8 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|385802442|ref|YP_005838842.1| - 1.3e-15 57.8 5.6 1.5e-08 34.5 1.4 3.2 2 1 0 2 2 2 2 Amidohydrolase family TatD_DNase PF01026.21 gi|385802442|ref|YP_005838842.1| - 0.0046 16.4 0.1 0.11 11.9 0.0 2.4 1 1 1 2 2 2 1 TatD related DNase DHOase PF12890.7 gi|385802442|ref|YP_005838842.1| - 0.025 14.5 0.0 0.063 13.2 0.0 1.8 2 0 0 2 2 2 0 Dihydro-orotase-like AP_endonuc_2 PF01261.24 gi|385802442|ref|YP_005838842.1| - 0.032 13.7 0.1 0.056 12.9 0.1 1.4 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Usp PF00582.26 gi|385802442|ref|YP_005838842.1| - 0.053 14.0 0.1 0.12 12.8 0.1 1.7 1 0 0 1 1 1 0 Universal stress protein family Presenilin PF01080.17 gi|385802443|ref|YP_005838843.1| - 7.3 5.2 6.0 11 4.7 6.0 1.3 1 0 0 1 1 1 0 Presenilin Usp PF00582.26 gi|385802444|ref|YP_005838844.1| - 2.8e-15 57.1 0.3 5.1e-13 49.7 0.3 2.0 1 1 0 1 1 1 1 Universal stress protein family Acetyltransf_1 PF00583.25 gi|385802445|ref|YP_005838845.1| - 2.1e-13 50.5 0.0 2.6e-13 50.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|385802445|ref|YP_005838845.1| - 2.7e-11 43.5 0.0 3.4e-11 43.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|385802445|ref|YP_005838845.1| - 3.8e-09 36.8 0.0 5.5e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|385802445|ref|YP_005838845.1| - 9.9e-06 25.4 0.0 1.5e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|385802445|ref|YP_005838845.1| - 0.00011 22.9 0.0 0.00014 22.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|385802445|ref|YP_005838845.1| - 0.051 13.1 0.0 0.069 12.7 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase Acetyltransf_4 PF13420.7 gi|385802445|ref|YP_005838845.1| - 0.15 12.2 0.0 0.22 11.6 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Usp PF00582.26 gi|385802446|ref|YP_005838846.1| - 9.5e-15 55.3 2.6 1.4e-14 54.8 2.6 1.2 1 0 0 1 1 1 1 Universal stress protein family DUF4949 PF16307.5 gi|385802446|ref|YP_005838846.1| - 0.12 12.5 0.5 0.2 11.8 0.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4949) Usp PF00582.26 gi|385802447|ref|YP_005838847.1| - 3.6e-32 111.8 0.1 4.2e-32 111.6 0.1 1.1 1 0 0 1 1 1 1 Universal stress protein family DHHA1 PF02272.19 gi|385802448|ref|YP_005838848.1| - 0.011 16.2 0.0 0.023 15.1 0.0 1.6 1 0 0 1 1 1 0 DHHA1 domain DHH PF01368.20 gi|385802448|ref|YP_005838848.1| - 0.04 14.2 0.1 0.23 11.7 0.1 2.0 1 1 0 1 1 1 0 DHH family HSP20 PF00011.21 gi|385802450|ref|YP_005838850.1| - 1.3e-13 50.9 0.0 1.7e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|385802450|ref|YP_005838850.1| - 1.1e-11 44.2 0.0 2.1e-11 43.2 0.0 1.5 2 0 0 2 2 2 1 HSP20-like domain found in ArsA Ribosomal_S6e PF01092.19 gi|385802451|ref|YP_005838851.1| - 1.3e-37 128.6 0.1 1.5e-37 128.3 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S6e SAPS PF04499.15 gi|385802451|ref|YP_005838851.1| - 1.6 7.4 3.6 2 7.1 3.6 1.0 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein SDA1 PF05285.12 gi|385802451|ref|YP_005838851.1| - 1.7 8.0 10.0 1.8 7.9 10.0 1.2 1 0 0 1 1 1 0 SDA1 Cwf_Cwc_15 PF04889.12 gi|385802451|ref|YP_005838851.1| - 2.2 8.0 11.3 2.9 7.6 11.3 1.2 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein SGT1 PF07093.11 gi|385802451|ref|YP_005838851.1| - 6.5 5.1 6.9 8.1 4.7 6.9 1.1 1 0 0 1 1 1 0 SGT1 protein Response_reg PF00072.24 gi|385802454|ref|YP_005838854.1| - 2.2e-21 76.1 0.0 6.2e-21 74.7 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.12 gi|385802454|ref|YP_005838854.1| - 2e-15 56.8 0.0 1.6e-07 31.5 0.0 2.8 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|385802454|ref|YP_005838854.1| - 6.6e-15 55.6 0.1 2.6e-14 53.7 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|385802454|ref|YP_005838854.1| - 3.2e-11 43.4 0.1 1.8e-07 31.4 0.0 3.2 2 0 0 2 2 2 2 PAS fold GAF_2 PF13185.6 gi|385802454|ref|YP_005838854.1| - 2.9e-10 40.6 0.9 6.7e-10 39.4 0.9 1.7 1 0 0 1 1 1 1 GAF domain HisKA PF00512.25 gi|385802454|ref|YP_005838854.1| - 1.3e-08 34.7 0.4 1.3e-08 34.7 0.4 4.1 5 0 0 5 5 5 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|385802454|ref|YP_005838854.1| - 1.7e-07 31.2 0.1 0.00037 20.5 0.0 3.0 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|385802454|ref|YP_005838854.1| - 2.8e-06 27.5 0.0 9.6e-06 25.8 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|385802454|ref|YP_005838854.1| - 3e-05 23.9 0.1 0.00033 20.6 0.0 2.6 2 0 0 2 2 2 1 PAS domain GAF_3 PF13492.6 gi|385802454|ref|YP_005838854.1| - 9.4e-05 22.8 0.2 0.00019 21.8 0.2 1.5 1 0 0 1 1 1 1 GAF domain Peptidase_M29 PF02073.15 gi|385802455|ref|YP_005838855.1| - 1.2e-61 208.7 0.2 1.4e-61 208.5 0.2 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) Phage_base_V PF04717.12 gi|385802455|ref|YP_005838855.1| - 0.062 13.2 0.5 7.6 6.5 0.0 3.2 3 0 0 3 3 3 0 Type VI secretion system, phage-baseplate injector X PF00739.19 gi|385802455|ref|YP_005838855.1| - 0.13 12.4 0.0 0.29 11.2 0.0 1.6 1 0 0 1 1 1 0 Trans-activation protein X 3HCDH_RFF PF18321.1 gi|385802455|ref|YP_005838855.1| - 0.29 11.6 3.2 3.5 8.2 0.6 3.0 3 0 0 3 3 3 0 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain NAD_binding_2 PF03446.15 gi|385802456|ref|YP_005838856.1| - 1.1e-33 116.6 0.1 1.6e-33 116.1 0.1 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.19 gi|385802456|ref|YP_005838856.1| - 2.6e-23 82.9 0.0 3.7e-23 82.3 0.0 1.3 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain NAD_binding_11 PF14833.6 gi|385802456|ref|YP_005838856.1| - 1.9e-05 24.9 0.3 0.06 13.6 0.0 3.1 2 1 1 3 3 3 2 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TrkA_N PF02254.18 gi|385802456|ref|YP_005838856.1| - 8.2e-05 22.9 0.1 0.00019 21.6 0.0 1.7 2 0 0 2 2 2 1 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|385802456|ref|YP_005838856.1| - 0.00021 20.7 0.0 0.00031 20.2 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|385802456|ref|YP_005838856.1| - 0.00022 21.7 0.0 0.00042 20.9 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|385802456|ref|YP_005838856.1| - 0.0038 17.1 0.2 0.0059 16.5 0.2 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|385802456|ref|YP_005838856.1| - 0.019 14.6 0.2 0.03 13.9 0.2 1.4 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.6 gi|385802456|ref|YP_005838856.1| - 0.066 13.1 0.3 3.9 7.3 0.1 2.3 2 0 0 2 2 2 0 NAD(P)H-binding DapB_N PF01113.20 gi|385802456|ref|YP_005838856.1| - 0.19 11.9 0.8 0.46 10.6 0.8 1.8 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Fer2 PF00111.27 gi|385802457|ref|YP_005838857.1| - 5.3e-12 45.5 0.5 9.4e-12 44.7 0.5 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DUF3784 PF12650.7 gi|385802458|ref|YP_005838858.1| - 1.7e-07 31.3 0.7 2.8e-07 30.6 0.2 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF3784) YtpI PF14007.6 gi|385802458|ref|YP_005838858.1| - 0.052 13.7 0.2 0.052 13.7 0.2 2.6 3 0 0 3 3 3 0 YtpI-like protein CopD PF05425.13 gi|385802458|ref|YP_005838858.1| - 0.22 12.0 5.7 0.062 13.7 2.4 1.7 1 1 1 2 2 2 0 Copper resistance protein D Cyd_oper_YbgE PF09600.10 gi|385802458|ref|YP_005838858.1| - 0.8 10.1 5.7 4.8 7.6 1.8 2.1 2 0 0 2 2 2 0 Cyd operon protein YbgE (Cyd_oper_YbgE) LapA_dom PF06305.11 gi|385802458|ref|YP_005838858.1| - 1.3 8.8 0.1 1.3 8.8 0.1 2.3 2 1 1 3 3 3 0 Lipopolysaccharide assembly protein A domain HTH_3 PF01381.22 gi|385802459|ref|YP_005838859.1| - 4.8e-13 49.0 0.0 6.3e-13 48.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|385802459|ref|YP_005838859.1| - 1.2e-08 34.9 0.0 1.7e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|385802459|ref|YP_005838859.1| - 3e-05 24.3 0.0 3.4e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|385802459|ref|YP_005838859.1| - 9.6e-05 22.8 0.0 0.00012 22.4 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_Crp_2 PF13545.6 gi|385802459|ref|YP_005838859.1| - 0.00026 20.9 0.0 0.00036 20.4 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|385802459|ref|YP_005838859.1| - 0.0055 16.6 0.0 0.0098 15.8 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_25 PF13413.6 gi|385802459|ref|YP_005838859.1| - 0.0096 15.8 0.0 0.011 15.5 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain Crp PF00325.20 gi|385802459|ref|YP_005838859.1| - 0.19 11.4 0.0 0.29 10.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family DUF2178 PF09946.9 gi|385802460|ref|YP_005838860.1| - 1e-06 28.8 0.6 0.0024 18.0 0.2 2.7 1 1 2 3 3 3 2 Predicted membrane protein (DUF2178) DUF872 PF05915.12 gi|385802460|ref|YP_005838860.1| - 0.19 11.9 2.5 2.5 8.3 0.1 2.1 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) HTH_23 PF13384.6 gi|385802461|ref|YP_005838861.1| - 3.9e-05 23.3 0.1 0.00012 21.8 0.0 1.8 2 1 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|385802461|ref|YP_005838861.1| - 4.8e-05 23.3 0.0 0.00015 21.7 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn helix HTH_7 PF02796.15 gi|385802461|ref|YP_005838861.1| - 0.0031 17.5 0.0 0.0078 16.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Phage_NinH PF06322.11 gi|385802461|ref|YP_005838861.1| - 0.0033 17.3 0.2 0.0057 16.5 0.2 1.5 1 0 0 1 1 1 1 Phage NinH protein HTH_28 PF13518.6 gi|385802461|ref|YP_005838861.1| - 0.0081 16.3 0.2 0.024 14.7 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|385802461|ref|YP_005838861.1| - 0.024 14.7 0.0 0.22 11.6 0.0 2.2 1 1 1 2 2 2 0 Helix-turn-helix HTH_11 PF08279.12 gi|385802461|ref|YP_005838861.1| - 0.031 14.2 0.2 0.65 10.0 0.0 2.2 1 1 1 2 2 2 0 HTH domain Ribosomal_L21e PF01157.18 gi|385802461|ref|YP_005838861.1| - 0.071 13.0 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L21e Sigma70_r4 PF04545.16 gi|385802461|ref|YP_005838861.1| - 0.074 12.6 0.1 0.35 10.4 0.0 2.3 1 1 2 3 3 3 0 Sigma-70, region 4 HTH_8 PF02954.19 gi|385802461|ref|YP_005838861.1| - 0.077 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family GerE PF00196.19 gi|385802461|ref|YP_005838861.1| - 0.09 12.3 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_Tnp_ISL3 PF13542.6 gi|385802461|ref|YP_005838861.1| - 0.097 12.1 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|385802462|ref|YP_005838862.1| - 0.0055 16.8 0.0 0.012 15.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|385802462|ref|YP_005838862.1| - 0.019 14.9 0.0 0.066 13.1 0.0 1.9 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|385802462|ref|YP_005838862.1| - 0.029 14.2 0.0 0.068 13.0 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.6 gi|385802462|ref|YP_005838862.1| - 0.1 12.7 0.0 0.26 11.3 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn helix DUF1871 PF08958.10 gi|385802462|ref|YP_005838862.1| - 0.11 12.9 0.0 0.28 11.6 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1871) NTP_transf_5 PF14907.6 gi|385802463|ref|YP_005838863.1| - 9.5e-05 22.1 0.2 0.00014 21.6 0.2 1.3 1 1 0 1 1 1 1 Uncharacterised nucleotidyltransferase AbiEii PF08843.11 gi|385802463|ref|YP_005838863.1| - 0.011 15.7 1.3 0.096 12.6 1.3 2.3 1 1 0 1 1 1 0 Nucleotidyl transferase AbiEii toxin, Type IV TA system RHH_1 PF01402.21 gi|385802465|ref|YP_005838865.1| - 0.0021 17.9 0.1 0.011 15.6 0.0 2.1 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family ParE_toxin PF05016.15 gi|385802466|ref|YP_005838866.1| - 0.00034 21.2 0.0 0.00043 20.8 0.0 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE Ion_trans PF00520.31 gi|385802469|ref|YP_005838869.1| - 1.6e-27 96.3 7.2 1.8e-27 96.2 7.2 1.0 1 0 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.16 gi|385802469|ref|YP_005838869.1| - 1.2e-12 47.6 1.1 1.2e-12 47.6 1.1 2.0 2 0 0 2 2 2 1 Ion channel zf-ribbon_3 PF13248.6 gi|385802469|ref|YP_005838869.1| - 0.0018 17.6 0.2 0.0026 17.1 0.2 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|385802469|ref|YP_005838869.1| - 0.068 12.9 0.4 0.11 12.3 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Glug PF07581.12 gi|385802470|ref|YP_005838870.1| - 4.4e-111 356.2 944.9 0.00086 19.6 1.2 112.3 110 2 2 112 112 112 75 The GLUG motif HHH_5 PF14520.6 gi|385802470|ref|YP_005838870.1| - 6.9e-10 39.4 0.6 0.0059 17.2 0.0 3.7 3 0 0 3 3 3 3 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|385802470|ref|YP_005838870.1| - 4.4e-07 30.2 0.1 1.4 9.1 0.0 3.7 3 0 0 3 3 3 3 Domain of unknown function (DUF4332) Cadherin PF00028.17 gi|385802470|ref|YP_005838870.1| - 7.7e-06 26.3 5.0 1.3e-05 25.5 0.0 4.4 3 0 0 3 3 3 1 Cadherin domain Big_7 PF17957.1 gi|385802470|ref|YP_005838870.1| - 0.0022 18.7 6.5 0.0022 18.7 6.5 23.0 21 2 1 22 22 22 2 Bacterial Ig domain Cdd1 PF11731.8 gi|385802470|ref|YP_005838870.1| - 0.032 14.5 0.0 2.7 8.3 0.0 2.6 2 0 0 2 2 2 0 Pathogenicity locus Macoilin PF09726.9 gi|385802470|ref|YP_005838870.1| - 0.33 9.5 2.0 0.7 8.4 2.0 1.4 1 0 0 1 1 1 0 Macoilin family Mur_ligase_M PF08245.12 gi|385802471|ref|YP_005838871.1| - 0.0059 16.6 0.0 0.012 15.6 0.0 1.5 1 1 0 1 1 1 1 Mur ligase middle domain Caps_synth_CapC PF14102.6 gi|385802472|ref|YP_005838872.1| - 3.7e-26 91.9 30.2 2.1e-19 70.1 8.1 3.9 4 1 0 4 4 4 2 Capsule biosynthesis CapC DUF3487 PF11990.8 gi|385802472|ref|YP_005838872.1| - 0.019 14.9 2.2 0.019 14.9 2.2 4.9 3 2 3 6 6 6 0 Protein of unknown function (DUF3487) IncD PF17628.2 gi|385802472|ref|YP_005838872.1| - 2.6 7.8 4.9 5.5 6.8 1.3 2.5 2 0 0 2 2 2 0 Inclusion membrane protein D RexB PF15968.5 gi|529167400|ref|YP_008378657.1| - 0.076 13.5 1.4 0.11 13.0 1.4 1.3 1 1 0 1 1 1 0 Membrane-anchored ion channel, Abi component BAT PF15915.5 gi|385802474|ref|YP_005838874.1| - 1.4e-13 51.0 2.1 1.4e-13 51.0 2.1 3.5 4 0 0 4 4 4 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|385802474|ref|YP_005838874.1| - 3.1e-10 39.7 0.0 7.6e-10 38.4 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain HisKA_7TM PF16927.5 gi|385802474|ref|YP_005838874.1| - 2.8e-07 30.8 21.6 3.9e-07 30.3 21.6 1.2 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase PAS_8 PF13188.7 gi|385802474|ref|YP_005838874.1| - 1.3e-05 25.1 0.0 0.0011 19.0 0.0 2.7 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|385802474|ref|YP_005838874.1| - 2e-05 24.6 0.0 0.066 13.2 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|385802474|ref|YP_005838874.1| - 0.0048 17.1 0.0 0.1 12.9 0.0 2.6 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|385802474|ref|YP_005838874.1| - 0.067 13.5 0.0 0.64 10.3 0.0 2.6 3 0 0 3 3 3 0 PAS domain HTH_8 PF02954.19 gi|385802474|ref|YP_005838874.1| - 0.15 11.9 0.0 0.34 10.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family Pyr_redox_2 PF07992.14 gi|385802475|ref|YP_005838875.1| - 3.4e-36 125.0 0.1 5e-36 124.4 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|385802475|ref|YP_005838875.1| - 2.5e-09 37.6 0.2 9.5e-08 32.5 0.0 3.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|385802475|ref|YP_005838875.1| - 2.4e-08 34.2 0.0 1.3e-07 31.9 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TrkA_N PF02254.18 gi|385802475|ref|YP_005838875.1| - 6.5e-06 26.4 0.0 0.00041 20.6 0.0 2.6 2 0 0 2 2 2 1 TrkA-N domain GIDA PF01134.22 gi|385802475|ref|YP_005838875.1| - 0.00023 20.4 2.5 0.27 10.3 0.0 3.0 2 1 0 2 2 2 2 Glucose inhibited division protein A Semialdhyde_dh PF01118.24 gi|385802475|ref|YP_005838875.1| - 0.00078 19.9 0.3 0.099 13.1 0.1 2.9 3 0 0 3 3 3 1 Semialdehyde dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|385802475|ref|YP_005838875.1| - 0.0019 18.5 0.0 0.98 9.7 0.0 2.7 2 0 0 2 2 2 2 Saccharopine dehydrogenase NADP binding domain Thi4 PF01946.17 gi|385802475|ref|YP_005838875.1| - 0.0034 16.7 0.2 0.022 14.0 0.1 2.1 2 0 0 2 2 2 1 Thi4 family YdjM PF04307.14 gi|385802476|ref|YP_005838876.1| - 0.00016 21.1 5.5 0.0011 18.3 5.5 1.9 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase MarR_2 PF12802.7 gi|385802478|ref|YP_005838878.1| - 5.2e-08 32.6 0.0 9.2e-08 31.9 0.0 1.5 1 1 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|385802478|ref|YP_005838878.1| - 3.5e-07 29.9 0.0 9.1e-07 28.6 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|385802478|ref|YP_005838878.1| - 6.3e-07 29.2 0.0 1e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|385802478|ref|YP_005838878.1| - 9.8e-06 25.4 0.0 2e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|385802478|ref|YP_005838878.1| - 1.6e-05 24.4 0.1 5.9e-05 22.5 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|385802478|ref|YP_005838878.1| - 0.00012 22.1 0.0 0.00023 21.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|385802478|ref|YP_005838878.1| - 0.00016 21.5 0.0 0.00027 20.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Dimerisation2 PF16864.5 gi|385802478|ref|YP_005838878.1| - 0.00031 20.7 0.0 0.00054 19.9 0.0 1.4 1 1 0 1 1 1 1 Dimerisation domain HTH_27 PF13463.6 gi|385802478|ref|YP_005838878.1| - 0.0012 19.3 0.0 0.0046 17.4 0.0 2.0 3 0 0 3 3 2 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|385802478|ref|YP_005838878.1| - 0.0022 17.8 0.0 0.0033 17.2 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_Crp_2 PF13545.6 gi|385802478|ref|YP_005838878.1| - 0.0075 16.2 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_36 PF13730.6 gi|385802478|ref|YP_005838878.1| - 0.013 15.4 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|385802478|ref|YP_005838878.1| - 0.021 14.8 0.0 0.047 13.6 0.0 1.6 1 0 0 1 1 1 0 HTH domain GntR PF00392.21 gi|385802478|ref|YP_005838878.1| - 0.036 13.7 0.0 0.065 12.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.12 gi|385802478|ref|YP_005838878.1| - 0.099 12.4 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF2250 PF10007.9 gi|385802478|ref|YP_005838878.1| - 0.16 12.1 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF2576 PF10845.8 gi|385802478|ref|YP_005838878.1| - 0.21 11.2 1.3 0.55 9.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2576) NAD_synthase PF02540.17 gi|385802480|ref|YP_005838880.1| - 2.2e-81 272.6 0.0 2.6e-81 272.3 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|385802480|ref|YP_005838880.1| - 5.2e-07 28.8 0.0 0.00036 19.5 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.21 gi|385802480|ref|YP_005838880.1| - 2.5e-05 24.1 0.0 3e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|385802480|ref|YP_005838880.1| - 2.7e-05 23.7 0.0 0.0001 21.9 0.0 1.8 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC Aldo_ket_red PF00248.21 gi|385802482|ref|YP_005838882.1| - 2.1e-46 158.5 0.0 2.4e-46 158.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Chlor_dismutase PF06778.12 gi|385802483|ref|YP_005838883.1| - 5.5e-68 228.4 0.1 1.4e-67 227.1 0.0 1.7 2 0 0 2 2 2 1 Chlorite dismutase ABM PF03992.16 gi|385802483|ref|YP_005838883.1| - 1.1e-06 28.7 5.2 2.5e-06 27.5 0.1 3.2 3 0 0 3 3 3 1 Antibiotic biosynthesis monooxygenase CAP_assoc_N PF14504.6 gi|385802483|ref|YP_005838883.1| - 0.15 11.8 1.1 0.38 10.5 1.0 1.7 2 0 0 2 2 2 0 CAP-associated N-terminal Peptidase_M50 PF02163.22 gi|385802484|ref|YP_005838884.1| - 3.4e-23 82.2 0.0 1.1e-22 80.5 0.0 1.8 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|385802484|ref|YP_005838884.1| - 5.7e-17 61.8 1.1 1.9e-07 31.3 0.1 2.4 2 0 0 2 2 2 2 PDZ domain PDZ_6 PF17820.1 gi|385802484|ref|YP_005838884.1| - 9.3e-12 44.6 1.9 5.8e-09 35.7 0.1 3.0 3 0 0 3 3 3 2 PDZ domain Tricorn_PDZ PF14685.6 gi|385802484|ref|YP_005838884.1| - 2.7e-11 43.3 2.7 7.9e-05 22.6 0.1 2.7 2 1 1 3 3 3 2 Tricorn protease PDZ domain PDZ PF00595.24 gi|385802484|ref|YP_005838884.1| - 4.2e-09 36.6 0.6 0.00057 20.2 0.1 2.6 2 0 0 2 2 2 2 PDZ domain DUF898 PF05987.13 gi|385802484|ref|YP_005838884.1| - 0.011 14.8 1.0 0.12 11.5 0.2 2.3 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF898) tRNA-synt_1f PF01921.18 gi|385802486|ref|YP_005838886.1| - 2.2e-97 326.2 0.0 3e-97 325.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|385802486|ref|YP_005838886.1| - 3.2e-06 26.1 0.0 0.00014 20.7 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|385802486|ref|YP_005838886.1| - 0.005 16.2 0.0 0.019 14.3 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain Thioesterase PF00975.20 gi|385802486|ref|YP_005838886.1| - 0.063 13.4 0.0 0.53 10.4 0.0 2.3 2 0 0 2 2 2 0 Thioesterase domain AA_kinase PF00696.28 gi|385802487|ref|YP_005838887.1| - 1.8e-22 80.1 6.3 9.8e-22 77.7 6.3 1.8 1 1 0 1 1 1 1 Amino acid kinase family PALP PF00291.25 gi|385802487|ref|YP_005838887.1| - 0.058 12.8 1.1 0.087 12.2 1.0 1.3 1 1 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme MoaE PF02391.17 gi|385802488|ref|YP_005838888.1| - 2.4e-23 82.6 0.1 4e-23 81.8 0.1 1.4 1 0 0 1 1 1 1 MoaE protein Peptidase_M50 PF02163.22 gi|385802490|ref|YP_005838890.1| - 1.7e-15 57.0 8.4 3.7e-07 29.7 3.9 2.3 1 1 1 2 2 2 2 Peptidase family M50 AIRS PF00586.24 gi|385802491|ref|YP_005838891.1| - 1.9e-16 60.4 4.1 3.8e-16 59.5 4.1 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|385802491|ref|YP_005838891.1| - 8.7e-09 35.7 0.1 1.4e-08 35.1 0.1 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain LPG_synthase_TM PF03706.13 gi|385802492|ref|YP_005838892.1| - 9.9e-47 159.9 34.9 1.2e-46 159.6 34.9 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Per1 PF04080.13 gi|385802492|ref|YP_005838892.1| - 3.6 7.3 8.4 60 3.3 8.4 2.1 1 1 0 1 1 1 0 Per1-like family Ribosomal_S19e PF01090.19 gi|385802493|ref|YP_005838893.1| - 8.7e-47 158.3 0.0 9.9e-47 158.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e GntR PF00392.21 gi|385802493|ref|YP_005838893.1| - 3.8e-05 23.2 0.1 0.0011 18.6 0.1 2.5 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family Mrr_N PF14338.6 gi|385802493|ref|YP_005838893.1| - 0.016 15.3 0.1 0.41 10.8 0.0 2.2 2 0 0 2 2 2 0 Mrr N-terminal domain FtsK_gamma PF09397.10 gi|385802493|ref|YP_005838893.1| - 0.063 13.1 0.1 1.3 8.9 0.0 2.6 3 0 0 3 3 3 0 Ftsk gamma domain Rrf2 PF02082.20 gi|385802493|ref|YP_005838893.1| - 0.089 13.1 0.1 0.29 11.5 0.1 1.8 1 1 1 2 2 2 0 Transcriptional regulator dsDNA_bind PF01984.20 gi|385802494|ref|YP_005838894.1| - 3.4e-25 88.5 16.0 3.7e-25 88.3 16.0 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain RMI1_N PF08585.12 gi|385802494|ref|YP_005838894.1| - 0.00067 19.5 3.5 0.00081 19.2 3.5 1.1 1 0 0 1 1 1 1 RecQ mediated genome instability protein DUF4072 PF13284.6 gi|385802494|ref|YP_005838894.1| - 0.048 14.1 2.8 4.6 7.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4072) PIN_8 PF18476.1 gi|385802494|ref|YP_005838894.1| - 0.14 12.0 5.4 0.18 11.6 5.4 1.0 1 0 0 1 1 1 0 PIN like domain DUF4679 PF15728.5 gi|385802494|ref|YP_005838894.1| - 0.14 11.1 4.3 0.17 10.9 4.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4679) FpoO PF10621.9 gi|385802494|ref|YP_005838894.1| - 0.15 12.4 0.1 0.18 12.1 0.1 1.2 1 0 0 1 1 1 0 F420H2 dehydrogenase subunit FpoO Caps_synth_GfcC PF06251.11 gi|385802494|ref|YP_005838894.1| - 0.18 11.4 6.2 0.22 11.1 6.2 1.1 1 0 0 1 1 1 0 Capsule biosynthesis GfcC DUF2188 PF09954.9 gi|385802494|ref|YP_005838894.1| - 0.52 10.5 5.9 0.55 10.4 3.5 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2188) DUF4404 PF14357.6 gi|385802494|ref|YP_005838894.1| - 2.8 8.7 11.3 1.4 9.6 7.6 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) YtxH PF12732.7 gi|385802494|ref|YP_005838894.1| - 9.2 6.9 7.9 52 4.5 7.9 2.1 1 1 0 1 1 1 0 YtxH-like protein Asn_synthase PF00733.21 gi|385802495|ref|YP_005838895.1| - 0.00095 18.9 0.2 0.0012 18.5 0.2 1.2 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|385802495|ref|YP_005838895.1| - 0.0097 14.7 0.1 0.039 12.7 0.1 1.8 1 1 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|385802495|ref|YP_005838895.1| - 0.029 13.5 0.0 0.043 12.9 0.0 1.3 1 0 0 1 1 1 0 NAD synthase Diphthami_syn_2 PF01902.17 gi|385802495|ref|YP_005838895.1| - 0.036 13.6 0.1 0.11 12.0 0.1 1.7 1 1 1 2 2 2 0 Diphthamide synthase PAPS_reduct PF01507.19 gi|385802495|ref|YP_005838895.1| - 0.048 13.7 0.0 0.28 11.2 0.0 1.9 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|385802495|ref|YP_005838895.1| - 0.087 12.3 0.1 0.17 11.4 0.0 1.4 1 1 0 1 1 1 0 Queuosine biosynthesis protein QueC tRNA-synt_His PF13393.6 gi|385802496|ref|YP_005838896.1| - 4.4e-45 154.3 0.0 5.4e-45 154.0 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|385802496|ref|YP_005838896.1| - 2.1e-11 43.8 0.5 4.8e-11 42.6 0.1 1.8 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|385802496|ref|YP_005838896.1| - 1e-08 35.4 0.0 1.2e-08 35.1 0.0 1.3 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Ldh_2 PF02615.14 gi|385802496|ref|YP_005838896.1| - 0.12 11.5 0.1 0.22 10.7 0.1 1.3 1 0 0 1 1 1 0 Malate/L-lactate dehydrogenase PseudoU_synth_1 PF01416.20 gi|385802497|ref|YP_005838897.1| - 5.8e-14 52.5 0.0 4e-11 43.3 0.0 2.4 2 0 0 2 2 2 2 tRNA pseudouridine synthase DZR PF12773.7 gi|385802498|ref|YP_005838898.1| - 0.0012 18.8 0.3 0.0019 18.2 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|385802498|ref|YP_005838898.1| - 0.0021 17.4 2.7 0.63 9.5 0.3 2.2 2 0 0 2 2 2 2 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|385802498|ref|YP_005838898.1| - 0.015 15.2 2.2 0.36 10.8 0.0 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon FYVE PF01363.21 gi|385802498|ref|YP_005838898.1| - 0.02 15.0 0.7 0.038 14.1 0.7 1.4 1 1 0 1 1 1 0 FYVE zinc finger Zn-ribbon_8 PF09723.10 gi|385802498|ref|YP_005838898.1| - 0.023 14.8 2.7 0.044 13.9 2.7 1.5 1 1 0 1 1 1 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|385802498|ref|YP_005838898.1| - 0.032 13.7 1.0 2.3 7.8 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ISL3 PF14690.6 gi|385802498|ref|YP_005838898.1| - 0.032 14.9 1.8 3.5 8.4 0.4 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-IS66 PF13005.7 gi|385802498|ref|YP_005838898.1| - 0.038 14.4 2.1 4 7.9 0.1 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-RING_7 PF02591.15 gi|385802498|ref|YP_005838898.1| - 0.092 12.9 1.6 2 8.6 0.2 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain DUF35_N PF12172.8 gi|385802498|ref|YP_005838898.1| - 0.11 12.4 3.0 5.3 7.0 0.2 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) RecR PF02132.15 gi|385802498|ref|YP_005838898.1| - 0.12 12.0 5.0 0.22 11.1 5.0 1.5 1 1 0 1 1 1 0 RecR protein zinc_ribbon_2 PF13240.6 gi|385802498|ref|YP_005838898.1| - 0.16 11.8 6.3 1 9.2 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|385802498|ref|YP_005838898.1| - 0.21 11.5 4.3 0.6 10.1 4.3 1.7 1 1 0 1 1 1 0 Nudix N-terminal zf-NADH-PPase PF09297.11 gi|385802498|ref|YP_005838898.1| - 0.32 10.7 5.0 1.7 8.4 0.1 2.6 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Peptidase_M3 PF01432.20 gi|385802499|ref|YP_005838899.1| - 6.2e-70 236.7 4.1 6.8e-70 236.6 0.7 2.0 2 0 0 2 2 2 1 Peptidase family M3 Peptidase_M3_N PF08439.10 gi|385802499|ref|YP_005838899.1| - 2.6e-24 85.3 0.1 1.5e-23 82.8 0.1 2.5 1 0 0 1 1 1 1 Oligopeptidase F MCR_beta_N PF02783.15 gi|385802499|ref|YP_005838899.1| - 0.15 11.7 0.1 0.34 10.5 0.1 1.7 2 0 0 2 2 2 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain HTH_ParB PF17762.1 gi|385802501|ref|YP_005838901.1| - 0.07 12.9 0.5 0.17 11.7 0.1 1.8 2 0 0 2 2 2 0 HTH domain found in ParB protein DUF3020 PF11223.8 gi|385802503|ref|YP_005838903.1| - 0.02 15.4 1.7 0.03 14.8 1.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3020) NIR_SIR PF01077.22 gi|385802505|ref|YP_005838905.1| - 6e-41 139.6 0.1 5.5e-31 107.2 0.0 2.5 3 0 0 3 3 3 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|385802505|ref|YP_005838905.1| - 6.1e-35 118.9 0.0 1.6e-16 59.9 0.0 3.2 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain HTH_AsnC-type PF13404.6 gi|385802507|ref|YP_005838907.1| - 3.5e-16 58.7 1.1 9.4e-16 57.4 1.1 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|385802507|ref|YP_005838907.1| - 8.3e-16 57.3 0.2 1.3e-15 56.7 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|385802507|ref|YP_005838907.1| - 2.3e-05 24.2 0.0 3.6e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|385802507|ref|YP_005838907.1| - 0.00012 21.9 0.1 0.00024 20.9 0.1 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|385802507|ref|YP_005838907.1| - 0.00013 21.8 0.0 0.00021 21.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.6 gi|385802507|ref|YP_005838907.1| - 0.00014 21.9 0.0 0.0047 17.0 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|385802507|ref|YP_005838907.1| - 0.00038 20.5 0.0 0.00071 19.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|385802507|ref|YP_005838907.1| - 0.0021 17.4 0.0 0.005 16.2 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.6 gi|385802507|ref|YP_005838907.1| - 0.0024 17.6 0.1 0.11 12.4 0.0 2.3 2 0 0 2 2 2 1 Homeodomain-like domain HTH_1 PF00126.27 gi|385802507|ref|YP_005838907.1| - 0.016 15.2 0.0 0.033 14.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Crp_2 PF13545.6 gi|385802507|ref|YP_005838907.1| - 0.017 15.1 0.1 0.03 14.3 0.1 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain ATPase-cat_bd PF12156.8 gi|385802507|ref|YP_005838907.1| - 0.018 15.8 3.0 0.035 14.8 3.0 1.5 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase TrmB PF01978.19 gi|385802507|ref|YP_005838907.1| - 0.018 14.9 0.0 0.032 14.1 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Mga PF08280.11 gi|385802507|ref|YP_005838907.1| - 0.028 14.5 0.0 0.043 13.8 0.0 1.2 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain zf-FCS PF06467.14 gi|385802507|ref|YP_005838907.1| - 0.04 13.9 2.9 0.071 13.1 2.9 1.4 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Fe_dep_repress PF01325.19 gi|385802507|ref|YP_005838907.1| - 0.045 13.9 0.0 0.077 13.2 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|385802507|ref|YP_005838907.1| - 0.06 13.9 0.1 0.11 13.1 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Arc_trans_TRASH PF08394.10 gi|385802507|ref|YP_005838907.1| - 0.085 13.2 2.0 0.19 12.1 2.0 1.7 1 1 0 1 1 1 0 Archaeal TRASH domain Ta0938 PF11494.8 gi|385802507|ref|YP_005838907.1| - 0.088 13.1 0.3 0.16 12.3 0.3 1.3 1 0 0 1 1 1 0 Ta0938 YHS PF04945.13 gi|385802507|ref|YP_005838907.1| - 0.11 12.6 0.3 0.26 11.4 0.3 1.6 1 0 0 1 1 1 0 YHS domain HTH_11 PF08279.12 gi|385802507|ref|YP_005838907.1| - 0.11 12.4 0.1 0.2 11.6 0.1 1.4 1 0 0 1 1 1 0 HTH domain Acetyltransf_14 PF03421.16 gi|385802507|ref|YP_005838907.1| - 0.13 12.3 0.0 0.19 11.7 0.0 1.2 1 0 0 1 1 1 0 YopJ Serine/Threonine acetyltransferase zf-H2C2_2 PF13465.6 gi|385802507|ref|YP_005838907.1| - 0.2 12.2 1.6 0.53 10.8 0.5 2.0 2 0 0 2 2 2 0 Zinc-finger double domain E1-E2_ATPase PF00122.20 gi|385802508|ref|YP_005838908.1| - 5.8e-49 166.1 5.8 5.8e-49 166.1 5.8 2.2 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|385802508|ref|YP_005838908.1| - 1.7e-42 146.1 12.8 5.3e-42 144.5 10.5 2.8 3 1 0 3 3 3 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|385802508|ref|YP_005838908.1| - 5.5e-24 84.4 1.0 5.1e-14 52.5 0.1 3.2 3 0 0 3 3 3 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|385802508|ref|YP_005838908.1| - 1.6e-05 24.8 1.3 0.0034 17.2 0.5 2.5 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|385802508|ref|YP_005838908.1| - 0.00095 19.6 0.0 0.0055 17.1 0.1 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|385802508|ref|YP_005838908.1| - 0.0039 17.3 0.0 0.033 14.3 0.0 2.5 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Yippee-Mis18 PF03226.14 gi|385802508|ref|YP_005838908.1| - 0.11 12.7 0.4 0.28 11.4 0.4 1.6 1 0 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly DUF5105 PF17118.5 gi|385802508|ref|YP_005838908.1| - 0.13 12.0 0.1 0.13 12.0 0.1 2.3 3 1 0 3 3 3 0 Domain of unknown function (DUF5105) Pyr_redox_2 PF07992.14 gi|385802509|ref|YP_005838909.1| - 1e-55 189.1 0.1 1.5e-55 188.5 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|385802509|ref|YP_005838909.1| - 9.2e-22 77.4 0.2 3.2e-16 59.6 0.0 3.6 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|385802509|ref|YP_005838909.1| - 9.9e-11 41.4 0.0 6.9e-07 28.8 0.0 2.8 2 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|385802509|ref|YP_005838909.1| - 7.8e-10 39.0 0.0 7.9e-09 35.8 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HI0933_like PF03486.14 gi|385802509|ref|YP_005838909.1| - 2.9e-07 29.5 0.0 0.49 9.0 0.0 4.0 3 1 1 4 4 4 3 HI0933-like protein NAD_binding_8 PF13450.6 gi|385802509|ref|YP_005838909.1| - 2.4e-06 27.7 0.3 0.0026 17.9 0.0 3.7 4 0 0 4 4 4 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|385802509|ref|YP_005838909.1| - 1e-05 24.9 0.6 1.3 8.0 0.1 3.9 3 1 1 4 4 4 2 FAD binding domain DAO PF01266.24 gi|385802509|ref|YP_005838909.1| - 0.00011 22.0 7.2 0.58 9.7 0.0 4.2 3 1 1 4 4 4 2 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|385802509|ref|YP_005838909.1| - 0.005 16.2 0.1 1.5 8.0 0.0 2.8 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase 3HCDH_N PF02737.18 gi|385802509|ref|YP_005838909.1| - 0.022 14.6 0.0 0.037 13.9 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.6 gi|385802509|ref|YP_005838909.1| - 0.038 14.0 0.5 9.2 6.2 0.0 3.3 3 1 1 4 4 4 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|385802509|ref|YP_005838909.1| - 0.12 11.4 0.0 3.3 6.7 0.0 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein 2-Hacid_dh_C PF02826.19 gi|385802509|ref|YP_005838909.1| - 0.16 11.3 0.0 0.36 10.2 0.0 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Beta-Casp PF10996.8 gi|385802510|ref|YP_005838910.1| - 7.3e-14 52.0 0.0 1.7e-13 50.8 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|385802510|ref|YP_005838910.1| - 1.3e-12 47.5 0.0 1.2e-11 44.3 0.0 2.3 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|385802510|ref|YP_005838910.1| - 1.3e-07 31.3 0.0 2.5e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|385802510|ref|YP_005838910.1| - 1.6e-07 31.0 2.3 2e-07 30.8 1.1 1.7 2 1 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|385802510|ref|YP_005838910.1| - 2.5e-05 24.4 6.7 0.00016 21.8 6.7 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|385802510|ref|YP_005838910.1| - 0.0085 16.0 0.1 0.031 14.2 0.1 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Rhodanese PF00581.20 gi|385802510|ref|YP_005838910.1| - 0.049 14.2 0.0 0.12 13.0 0.0 1.7 1 0 0 1 1 1 0 Rhodanese-like domain DUF1617 PF07761.12 gi|385802510|ref|YP_005838910.1| - 0.08 13.0 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1617) FtsK_SpoIIIE_N PF12538.8 gi|385802511|ref|YP_005838911.1| - 0.098 12.9 1.5 0.89 9.8 0.1 2.4 2 0 0 2 2 2 0 DNA transporter FidL_like PF15941.5 gi|385802511|ref|YP_005838911.1| - 0.34 11.4 2.0 12 6.5 0.2 2.5 2 0 0 2 2 2 0 FidL-like putative membrane protein zinc-ribbons_6 PF07191.12 gi|385802512|ref|YP_005838912.1| - 0.0037 17.2 0.6 0.0043 17.0 0.6 1.1 1 0 0 1 1 1 1 zinc-ribbons IBR PF01485.21 gi|385802512|ref|YP_005838912.1| - 0.017 15.4 0.5 0.02 15.1 0.5 1.1 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain OrfB_Zn_ribbon PF07282.11 gi|385802512|ref|YP_005838912.1| - 0.025 14.5 0.2 0.03 14.3 0.2 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 gi|385802512|ref|YP_005838912.1| - 0.041 13.6 7.1 0.77 9.6 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF2310 PF10071.9 gi|385802512|ref|YP_005838912.1| - 0.043 13.1 0.3 0.045 13.0 0.3 1.0 1 0 0 1 1 1 0 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) NOB1_Zn_bind PF08772.11 gi|385802512|ref|YP_005838912.1| - 0.25 11.5 2.7 0.29 11.3 0.0 1.9 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like PhnA_Zn_Ribbon PF08274.12 gi|385802512|ref|YP_005838912.1| - 0.27 11.2 3.5 0.49 10.4 0.3 1.8 1 1 1 2 2 2 0 PhnA Zinc-Ribbon HscB_4_cys PF18256.1 gi|385802512|ref|YP_005838912.1| - 0.65 9.9 6.5 8.9 6.2 6.4 2.1 1 1 1 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif Glyoxalase PF00903.25 gi|385802513|ref|YP_005838913.1| - 2.5e-07 30.9 0.0 3.6e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|385802513|ref|YP_005838913.1| - 0.0001 22.5 0.0 0.0002 21.6 0.0 1.5 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ADH_N PF08240.12 gi|385802514|ref|YP_005838914.1| - 1e-24 86.5 2.0 1e-24 86.5 2.0 2.0 2 1 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|385802514|ref|YP_005838914.1| - 2.4e-24 85.8 0.9 4.5e-24 84.9 0.9 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|385802514|ref|YP_005838914.1| - 1.1e-06 28.3 0.7 2.1e-06 27.4 0.7 1.4 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N_assoc PF13823.6 gi|385802514|ref|YP_005838914.1| - 0.00014 21.7 0.1 0.00014 21.7 0.1 2.0 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-associated ADH_zinc_N_2 PF13602.6 gi|385802514|ref|YP_005838914.1| - 0.001 20.1 0.1 0.0024 18.9 0.1 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|385802514|ref|YP_005838914.1| - 0.076 12.3 3.0 0.13 11.5 3.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain AA_permease_2 PF13520.6 gi|385802515|ref|YP_005838915.1| - 1.7e-51 175.4 44.8 2.1e-51 175.1 44.8 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|385802515|ref|YP_005838915.1| - 4.1e-45 154.3 41.6 5.2e-45 153.9 41.6 1.0 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|385802515|ref|YP_005838915.1| - 3.9e-09 35.8 11.4 3.9e-09 35.8 11.4 2.7 2 1 0 2 2 2 1 Spore germination protein TrkA_N PF02254.18 gi|385802516|ref|YP_005838916.1| - 3e-22 79.1 2.0 6.3e-22 78.0 0.6 1.9 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|385802516|ref|YP_005838916.1| - 4.6e-07 29.6 0.0 9.9e-07 28.5 0.0 1.6 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|385802516|ref|YP_005838916.1| - 5.8e-06 26.7 0.2 9.9e-06 25.9 0.2 1.5 1 1 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_10 PF13460.6 gi|385802516|ref|YP_005838916.1| - 6.1e-05 23.0 0.9 0.0001 22.2 0.9 1.4 1 1 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|385802516|ref|YP_005838916.1| - 0.0009 18.8 0.2 0.0029 17.1 0.1 1.7 1 1 1 2 2 2 1 NAD dependent epimerase/dehydratase family F420_oxidored PF03807.17 gi|385802516|ref|YP_005838916.1| - 0.0014 19.2 0.0 0.0037 17.8 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|385802516|ref|YP_005838916.1| - 0.0028 17.9 0.2 0.0057 16.9 0.1 1.4 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain XdhC_C PF13478.6 gi|385802516|ref|YP_005838916.1| - 0.0039 17.7 0.1 0.0069 16.9 0.1 1.4 1 0 0 1 1 1 1 XdhC Rossmann domain NmrA PF05368.13 gi|385802516|ref|YP_005838916.1| - 0.0081 15.7 0.2 0.012 15.2 0.2 1.2 1 0 0 1 1 1 1 NmrA-like family Shikimate_DH PF01488.20 gi|385802516|ref|YP_005838916.1| - 0.0089 16.1 0.0 0.014 15.5 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.22 gi|385802516|ref|YP_005838916.1| - 0.017 15.9 0.0 0.035 14.9 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold 3HCDH_N PF02737.18 gi|385802516|ref|YP_005838916.1| - 0.02 14.8 0.1 0.04 13.8 0.1 1.5 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|385802516|ref|YP_005838916.1| - 0.029 13.6 0.0 0.047 12.9 0.0 1.4 1 0 0 1 1 1 0 FAD binding domain Pyr_redox PF00070.27 gi|385802516|ref|YP_005838916.1| - 0.033 14.7 0.0 0.067 13.8 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|385802516|ref|YP_005838916.1| - 0.042 13.2 0.0 0.062 12.7 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF1623 PF07785.11 gi|385802516|ref|YP_005838916.1| - 0.051 13.7 0.0 0.091 12.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1623) adh_short_C2 PF13561.6 gi|385802516|ref|YP_005838916.1| - 0.053 13.1 0.6 0.33 10.5 0.0 2.2 1 1 1 2 2 2 0 Enoyl-(Acyl carrier protein) reductase AlaDh_PNT_C PF01262.21 gi|385802516|ref|YP_005838916.1| - 0.059 12.7 0.2 0.087 12.1 0.2 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain UPF0180 PF03698.13 gi|385802516|ref|YP_005838916.1| - 0.079 13.1 0.0 0.2 11.9 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) Glyco_transf_4 PF13439.6 gi|385802516|ref|YP_005838916.1| - 0.11 12.5 0.1 6.2 6.8 0.0 2.5 2 1 0 2 2 2 0 Glycosyltransferase Family 4 MFS_1 PF07690.16 gi|385802517|ref|YP_005838917.1| - 6.7e-48 163.4 83.3 2.8e-40 138.3 51.7 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily NADH_4Fe-4S PF10589.9 gi|385802518|ref|YP_005838918.1| - 1.4e-21 76.4 0.2 3.8e-21 74.9 0.2 1.8 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Complex1_51K PF01512.17 gi|385802518|ref|YP_005838918.1| - 1.8e-09 37.7 0.0 2.8e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit AcetDehyd-dimer PF09290.11 gi|385802518|ref|YP_005838918.1| - 0.08 13.1 0.3 0.2 11.8 0.3 1.6 1 0 0 1 1 1 0 Prokaryotic acetaldehyde dehydrogenase, dimerisation Fer2_4 PF13510.6 gi|385802519|ref|YP_005838919.1| - 2.1e-23 82.1 1.1 7.1e-23 80.5 1.1 1.9 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.9 gi|385802519|ref|YP_005838919.1| - 1.3e-12 47.1 0.9 1.3e-12 47.1 0.9 2.8 4 0 0 4 4 2 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4_21 PF14697.6 gi|385802519|ref|YP_005838919.1| - 2.8e-09 36.9 8.6 2.8e-09 36.9 8.6 2.5 2 1 1 3 3 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|385802519|ref|YP_005838919.1| - 6.4e-09 35.5 11.6 2.7e-05 24.0 3.5 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|385802519|ref|YP_005838919.1| - 8.9e-09 35.8 9.5 8.9e-09 35.8 9.5 2.9 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|385802519|ref|YP_005838919.1| - 1.9e-07 31.1 8.2 1.9e-07 31.1 8.2 3.2 1 1 3 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|385802519|ref|YP_005838919.1| - 2.7e-07 30.6 4.9 0.00034 20.7 0.2 3.7 3 1 0 3 3 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|385802519|ref|YP_005838919.1| - 4.7e-07 29.4 25.1 0.00019 21.1 1.9 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|385802519|ref|YP_005838919.1| - 4.6e-05 23.3 28.1 0.0031 17.5 2.6 4.2 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|385802519|ref|YP_005838919.1| - 6e-05 23.4 8.6 6e-05 23.4 8.6 3.2 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|385802519|ref|YP_005838919.1| - 0.0016 19.4 3.0 0.0016 19.4 3.0 3.8 3 2 2 5 5 3 1 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|385802519|ref|YP_005838919.1| - 0.0028 18.3 13.2 0.0051 17.5 0.6 3.4 4 0 0 4 4 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|385802519|ref|YP_005838919.1| - 0.015 15.4 1.4 0.015 15.4 1.4 3.2 2 1 1 3 3 3 0 4Fe-4S dicluster domain RunxI PF08504.11 gi|385802519|ref|YP_005838919.1| - 0.67 10.7 3.8 2.2 9.1 3.8 1.8 1 0 0 1 1 1 0 Runx inhibition domain Fer4_22 PF17179.4 gi|385802519|ref|YP_005838919.1| - 0.71 10.8 18.4 0.79 10.6 4.4 3.3 4 1 0 4 4 3 0 4Fe-4S dicluster domain DiS_P_DiS PF06750.13 gi|385802519|ref|YP_005838919.1| - 0.9 9.7 6.2 2.1 8.6 0.0 3.0 3 1 0 3 3 3 0 Bacterial Peptidase A24 N-terminal domain Fer4_17 PF13534.6 gi|385802519|ref|YP_005838919.1| - 2.3 8.8 24.0 0.94 10.1 14.2 3.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|385802519|ref|YP_005838919.1| - 6.9 7.3 26.1 0.24 12.0 4.0 3.7 3 1 1 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Molybdopterin PF00384.22 gi|385802520|ref|YP_005838920.1| - 5.7e-78 262.8 0.0 6.9e-78 262.5 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|385802520|ref|YP_005838920.1| - 2.7e-31 107.9 0.1 6.8e-31 106.6 0.1 1.8 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|385802520|ref|YP_005838920.1| - 1.9e-12 47.0 0.0 3.6e-12 46.1 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain DUF1641 PF07849.11 gi|385802521|ref|YP_005838921.1| - 0.00011 22.0 0.2 0.0017 18.2 0.0 2.6 2 1 0 2 2 2 1 Protein of unknown function (DUF1641) GrpE PF01025.19 gi|385802521|ref|YP_005838921.1| - 0.054 13.2 1.4 0.083 12.5 1.4 1.4 1 0 0 1 1 1 0 GrpE DED PF01335.21 gi|385802521|ref|YP_005838921.1| - 0.22 11.8 3.4 0.66 10.3 1.2 2.6 1 1 2 3 3 3 0 Death effector domain CofC PF01983.16 gi|385802521|ref|YP_005838921.1| - 0.31 10.2 3.6 0.27 10.4 1.3 1.9 2 0 0 2 2 2 0 Guanylyl transferase CofC like Reprolysin_4 PF13583.6 gi|385802521|ref|YP_005838921.1| - 1.7 8.2 6.8 3.4 7.3 1.0 2.2 1 1 1 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like Molybdopterin PF00384.22 gi|385802522|ref|YP_005838922.1| - 2.7e-58 198.0 0.0 7.5e-58 196.5 0.0 1.6 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|385802522|ref|YP_005838922.1| - 2.6e-10 40.3 0.3 6.3e-10 39.1 0.3 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|385802522|ref|YP_005838922.1| - 2.5e-06 27.4 0.7 6.1e-06 26.1 0.7 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TPP_enzyme_M PF00205.22 gi|385802522|ref|YP_005838922.1| - 0.003 17.3 0.1 0.21 11.4 0.0 2.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain GreA_GreB PF01272.19 gi|385802522|ref|YP_005838922.1| - 0.019 14.9 0.1 0.073 13.0 0.3 1.9 2 0 0 2 2 2 0 Transcription elongation factor, GreA/GreB, C-term zf-ribbon_3 PF13248.6 gi|532164361|ref|YP_005838923.3| - 0.012 14.9 1.2 0.47 9.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|532164361|ref|YP_005838923.3| - 0.019 15.2 1.3 2.2 8.6 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon DUF1272 PF06906.11 gi|532164361|ref|YP_005838923.3| - 0.087 12.9 2.9 1.2 9.3 0.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) RNHCP PF12647.7 gi|532164361|ref|YP_005838923.3| - 0.098 12.6 0.6 0.13 12.2 0.6 1.2 1 0 0 1 1 1 0 RNHCP domain HypA PF01155.19 gi|532164361|ref|YP_005838923.3| - 0.14 12.2 0.7 0.18 11.8 0.7 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Actino_peptide PF14408.6 gi|532164361|ref|YP_005838923.3| - 1.2 9.3 4.2 1.9 8.6 4.2 1.3 1 0 0 1 1 1 0 Ribosomally synthesised peptide in actinomycetes Epimerase PF01370.21 gi|385802525|ref|YP_005838925.1| - 6.9e-21 74.8 0.0 8.8e-21 74.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|385802525|ref|YP_005838925.1| - 9e-15 54.4 0.0 1.1e-14 54.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|385802525|ref|YP_005838925.1| - 4.5e-12 45.7 0.4 6.5e-09 35.3 0.3 2.7 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|385802525|ref|YP_005838925.1| - 4.4e-11 43.0 0.0 5.6e-11 42.7 0.0 1.3 1 1 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|385802525|ref|YP_005838925.1| - 3.1e-10 39.7 0.0 1.5e-09 37.5 0.0 1.8 2 0 0 2 2 2 1 Male sterility protein GDP_Man_Dehyd PF16363.5 gi|385802525|ref|YP_005838925.1| - 8.2e-10 38.6 0.0 2.4e-09 37.1 0.0 1.8 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase NmrA PF05368.13 gi|385802525|ref|YP_005838925.1| - 0.00034 20.2 0.0 0.00061 19.4 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family RmlD_sub_bind PF04321.17 gi|385802525|ref|YP_005838925.1| - 0.0018 17.5 0.0 0.0031 16.7 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain Sacchrp_dh_NADP PF03435.18 gi|385802525|ref|YP_005838925.1| - 0.05 13.9 0.0 0.096 12.9 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain KR PF08659.10 gi|385802525|ref|YP_005838925.1| - 0.067 13.1 0.2 0.34 10.8 0.2 2.1 1 1 0 1 1 1 0 KR domain DHNA PF04038.12 gi|385802526|ref|YP_005838926.1| - 1.3e-39 135.1 0.1 1.5e-39 134.9 0.1 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase DUF2001 PF09393.10 gi|385802526|ref|YP_005838926.1| - 0.13 12.2 0.0 0.18 11.8 0.0 1.1 1 0 0 1 1 1 0 Phage tail tube protein Apolipoprotein PF01442.18 gi|385802527|ref|YP_005838927.1| - 0.0081 16.1 6.9 0.015 15.2 6.9 1.5 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain zf-HC2 PF13490.6 gi|385802527|ref|YP_005838927.1| - 0.051 13.8 0.9 0.051 13.8 0.9 2.7 3 0 0 3 3 3 0 Putative zinc-finger DUF883 PF05957.13 gi|385802527|ref|YP_005838927.1| - 0.077 13.6 3.7 0.59 10.8 0.1 2.6 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) TetR_C_16 PF17920.1 gi|385802527|ref|YP_005838927.1| - 0.2 11.9 1.4 0.69 10.2 0.2 2.3 1 1 2 3 3 3 0 Tetracyclin repressor-like, C-terminal domain ABC_membrane PF00664.23 gi|385802528|ref|YP_005838928.1| - 3.3e-39 135.2 6.1 6.5e-39 134.2 6.1 1.5 1 1 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|385802528|ref|YP_005838928.1| - 2.7e-37 128.4 0.0 5e-37 127.5 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 gi|385802528|ref|YP_005838928.1| - 3e-05 24.3 0.1 0.00016 22.0 0.1 2.2 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|385802528|ref|YP_005838928.1| - 0.00053 19.3 0.0 0.00093 18.5 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin RsgA_GTPase PF03193.16 gi|385802528|ref|YP_005838928.1| - 0.0014 18.5 0.0 0.0029 17.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_21 PF13304.6 gi|385802528|ref|YP_005838928.1| - 0.0017 18.3 0.0 0.0057 16.5 0.0 1.9 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|385802528|ref|YP_005838928.1| - 0.0046 17.3 0.1 0.011 16.2 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.6 gi|385802528|ref|YP_005838928.1| - 0.011 15.4 0.0 0.033 13.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|385802528|ref|YP_005838928.1| - 0.013 15.0 0.3 0.55 9.6 0.1 2.1 1 1 1 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|385802528|ref|YP_005838928.1| - 0.013 15.2 0.1 0.031 14.0 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|385802528|ref|YP_005838928.1| - 0.016 15.0 0.1 0.045 13.5 0.1 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|385802528|ref|YP_005838928.1| - 0.022 15.3 0.0 0.055 14.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|385802528|ref|YP_005838928.1| - 0.034 14.6 0.0 0.22 11.9 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|385802528|ref|YP_005838928.1| - 0.053 13.7 0.0 0.15 12.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|385802528|ref|YP_005838928.1| - 0.097 12.7 0.1 0.76 9.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF903 PF06004.12 gi|385802528|ref|YP_005838928.1| - 0.11 12.3 0.3 0.4 10.6 0.3 1.9 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF903) Guanylate_kin PF00625.21 gi|385802528|ref|YP_005838928.1| - 0.16 11.6 0.1 0.45 10.2 0.1 1.7 1 1 0 1 1 1 0 Guanylate kinase AAA_23 PF13476.6 gi|385802528|ref|YP_005838928.1| - 0.17 12.3 0.2 0.39 11.2 0.0 1.6 2 0 0 2 2 1 0 AAA domain DUF192 PF02643.15 gi|385802530|ref|YP_005838930.1| - 1.4e-28 98.9 0.0 1.8e-28 98.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 GvpG PF05120.12 gi|385802532|ref|YP_005838932.1| - 0.00038 20.4 0.1 0.00087 19.3 0.1 1.6 1 0 0 1 1 1 1 Gas vesicle protein G SHOCT PF09851.9 gi|385802532|ref|YP_005838932.1| - 0.00059 19.5 1.0 0.00074 19.2 0.1 1.7 2 0 0 2 2 2 1 Short C-terminal domain CdvA PF18822.1 gi|385802532|ref|YP_005838932.1| - 0.0061 16.4 0.0 0.0091 15.8 0.0 1.2 1 0 0 1 1 1 1 CdvA-like coiled-coil domain DUF1707 PF08044.11 gi|385802532|ref|YP_005838932.1| - 0.12 12.5 0.2 0.25 11.5 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1707) ABC2_membrane_2 PF12679.7 gi|385802533|ref|YP_005838933.1| - 2.4e-22 79.5 21.2 8.5e-22 77.8 21.2 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|385802534|ref|YP_005838934.1| - 2e-28 99.5 18.8 1.5e-27 96.6 18.8 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|385802534|ref|YP_005838934.1| - 0.00038 19.7 17.0 0.00038 19.7 17.0 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|385802534|ref|YP_005838934.1| - 0.0024 17.5 12.6 0.0045 16.6 11.4 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|385802534|ref|YP_005838934.1| - 0.0027 17.1 13.9 0.0027 17.1 13.9 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|385802534|ref|YP_005838934.1| - 0.37 10.7 16.5 0.28 11.1 11.0 2.7 2 1 1 3 3 3 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|385802535|ref|YP_005838935.1| - 5.4e-29 101.5 0.0 1.5e-28 100.0 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|385802535|ref|YP_005838935.1| - 1.9e-11 44.3 0.6 7.9e-07 29.2 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|385802535|ref|YP_005838935.1| - 5.8e-07 30.1 0.0 1.2e-06 29.1 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|385802535|ref|YP_005838935.1| - 0.0036 17.8 0.5 0.011 16.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|385802535|ref|YP_005838935.1| - 0.0074 16.2 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase SMC_N PF02463.19 gi|385802535|ref|YP_005838935.1| - 0.0091 15.4 0.0 4.7 6.6 0.0 2.4 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|385802535|ref|YP_005838935.1| - 0.014 15.1 0.1 0.033 13.9 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|385802535|ref|YP_005838935.1| - 0.075 13.1 0.5 0.52 10.4 0.2 2.5 1 1 1 2 2 2 0 50S ribosome-binding GTPase NAD_binding_10 PF13460.6 gi|385802536|ref|YP_005838936.1| - 6.7e-35 120.6 2.7 8e-35 120.4 2.7 1.1 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|385802536|ref|YP_005838936.1| - 1.8e-08 34.3 0.0 3.4e-08 33.3 0.0 1.6 1 1 0 1 1 1 1 NmrA-like family 3Beta_HSD PF01073.19 gi|385802536|ref|YP_005838936.1| - 5.9e-05 22.2 0.0 7.6e-05 21.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.21 gi|385802536|ref|YP_005838936.1| - 0.0028 17.2 0.1 0.0048 16.4 0.0 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family ADH_zinc_N PF00107.26 gi|385802536|ref|YP_005838936.1| - 0.017 15.1 0.1 0.031 14.3 0.1 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Ion_trans_2 PF07885.16 gi|385802537|ref|YP_005838937.1| - 2e-15 56.5 7.1 2e-15 56.5 7.1 2.4 2 1 1 3 3 3 1 Ion channel Ion_trans PF00520.31 gi|385802537|ref|YP_005838937.1| - 4.6e-13 49.0 12.7 8.4e-13 48.1 12.7 1.3 1 1 0 1 1 1 1 Ion transport protein DZR PF12773.7 gi|385802537|ref|YP_005838937.1| - 0.028 14.5 0.4 0.042 13.9 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.9 gi|385802537|ref|YP_005838937.1| - 0.031 14.3 2.5 0.059 13.5 2.5 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 DnaJ_CXXCXGXG PF00684.19 gi|385802537|ref|YP_005838937.1| - 0.14 12.5 0.3 0.22 11.9 0.3 1.3 1 0 0 1 1 1 0 DnaJ central domain zinc_ribbon_15 PF17032.5 gi|385802537|ref|YP_005838937.1| - 0.18 12.5 1.5 0.26 12.1 0.3 1.8 2 0 0 2 2 2 0 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|385802537|ref|YP_005838937.1| - 0.51 9.8 4.4 1.3 8.5 4.3 1.7 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|385802537|ref|YP_005838937.1| - 1.1 9.1 5.8 1.9 8.3 0.5 2.0 1 1 1 2 2 2 0 zinc-ribbon domain N_BRCA1_IG PF16158.5 gi|385802538|ref|YP_005838938.1| - 0.13 13.0 0.0 0.22 12.2 0.0 1.4 1 0 0 1 1 1 0 Ig-like domain from next to BRCA1 gene APCDDC PF14921.6 gi|385802540|ref|YP_005838940.1| - 0.029 13.8 0.0 0.032 13.7 0.0 1.1 1 0 0 1 1 1 0 Adenomatosis polyposis coli down-regulated 1 HhH-GPD PF00730.25 gi|385802541|ref|YP_005838941.1| - 4.8e-15 55.9 0.0 6.8e-15 55.4 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|385802541|ref|YP_005838941.1| - 5.6e-05 22.8 0.0 0.00017 21.3 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|385802541|ref|YP_005838941.1| - 0.0008 19.5 0.2 1.4 9.1 0.0 3.1 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|385802541|ref|YP_005838941.1| - 0.0028 18.2 0.0 0.22 12.1 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_8 PF14716.6 gi|385802541|ref|YP_005838941.1| - 0.026 14.9 0.3 0.15 12.5 0.3 2.1 1 1 0 1 1 1 0 Helix-hairpin-helix domain DUF2400 PF09674.10 gi|385802541|ref|YP_005838941.1| - 0.043 13.8 0.1 0.15 12.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2400) DUF3701 PF12482.8 gi|385802541|ref|YP_005838941.1| - 0.085 12.9 0.1 0.3 11.2 0.1 1.9 1 1 0 1 1 1 0 Phage integrase protein Acetyltransf_16 PF05301.11 gi|385802541|ref|YP_005838941.1| - 0.1 12.4 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase, Mec-17 Peripla_BP_2 PF01497.18 gi|385802542|ref|YP_005838942.1| - 3.2e-07 30.2 0.0 6.1e-07 29.2 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein TFIIB PF00382.19 gi|385802543|ref|YP_005838943.1| - 6.3e-38 128.7 0.2 1.2e-18 66.9 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|385802543|ref|YP_005838943.1| - 6.6e-15 54.4 3.0 1.7e-14 53.0 3.0 1.8 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|385802543|ref|YP_005838943.1| - 0.00065 19.2 1.2 0.38 10.3 0.0 3.9 4 0 0 4 4 4 1 Sigma-70, region 4 Anti-TRAP PF15777.5 gi|385802543|ref|YP_005838943.1| - 0.012 15.5 0.4 0.025 14.5 0.4 1.5 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-RRN7 PF11781.8 gi|385802543|ref|YP_005838943.1| - 0.046 13.4 0.7 0.079 12.7 0.7 1.4 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 HTH_AsnC-type PF13404.6 gi|385802543|ref|YP_005838943.1| - 0.072 12.9 2.7 1.3 8.9 0.1 3.8 4 0 0 4 4 4 0 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|385802543|ref|YP_005838943.1| - 0.081 12.8 2.0 7.8 6.5 0.2 2.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_Tnp_ISL3 PF13542.6 gi|385802543|ref|YP_005838943.1| - 0.11 11.9 1.1 0.35 10.3 0.2 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 A2L_zn_ribbon PF08792.10 gi|385802543|ref|YP_005838943.1| - 0.14 11.9 0.9 0.27 11.0 0.9 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|385802543|ref|YP_005838943.1| - 2.7 8.0 5.5 0.53 10.2 1.5 1.9 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DHquinase_I PF01487.15 gi|385802544|ref|YP_005838944.1| - 2.6e-47 162.0 0.0 3.1e-47 161.7 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase DDE_Tnp_1 PF01609.21 gi|385802545|ref|YP_005838945.1| - 1.3e-07 31.5 0.1 2.1e-07 30.8 0.1 1.4 1 0 0 1 1 1 1 Transposase DDE domain DHQS PF01959.16 gi|385802546|ref|YP_005838946.1| - 9.5e-140 465.5 5.7 1.1e-139 465.3 5.7 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase II QRPTase_C PF01729.19 gi|385802546|ref|YP_005838946.1| - 0.064 13.0 2.0 0.1 12.4 0.2 2.1 2 1 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain Hint_2 PF13403.6 gi|385802546|ref|YP_005838946.1| - 0.1 12.9 1.1 11 6.3 0.0 2.8 3 0 0 3 3 3 0 Hint domain DeoC PF01791.9 gi|385802547|ref|YP_005838947.1| - 3.3e-41 141.5 0.0 3.9e-41 141.2 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.24 gi|385802547|ref|YP_005838947.1| - 0.0025 17.3 0.0 0.0037 16.7 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel G3P_antiterm PF04309.12 gi|385802547|ref|YP_005838947.1| - 0.0051 16.2 0.5 0.38 10.1 0.0 2.6 3 0 0 3 3 3 1 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.17 gi|385802547|ref|YP_005838947.1| - 0.11 11.9 1.3 1.3 8.3 0.4 2.6 3 1 0 3 3 3 0 Thiamine monophosphate synthase DUF561 PF04481.12 gi|385802547|ref|YP_005838947.1| - 0.12 11.5 0.1 0.18 10.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF561) Trp_syntA PF00290.20 gi|385802548|ref|YP_005838948.1| - 1.2e-91 306.2 0.0 1.4e-91 306.0 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|385802548|ref|YP_005838948.1| - 0.0029 17.1 0.3 0.0047 16.4 0.3 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.17 gi|385802548|ref|YP_005838948.1| - 0.012 15.1 0.3 0.047 13.2 0.4 1.8 2 0 0 2 2 2 0 PcrB family PALP PF00291.25 gi|385802549|ref|YP_005838949.1| - 7.4e-39 133.9 0.4 1e-38 133.4 0.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IGPS PF00218.21 gi|385802550|ref|YP_005838950.1| - 1.6e-72 243.7 0.1 2e-72 243.4 0.1 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.18 gi|385802550|ref|YP_005838950.1| - 1.8e-07 30.6 0.6 6.7e-07 28.6 0.3 1.6 1 1 0 2 2 2 1 FMN-dependent dehydrogenase NanE PF04131.14 gi|385802550|ref|YP_005838950.1| - 4e-06 26.2 0.8 5.9e-05 22.3 0.8 2.4 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase QRPTase_C PF01729.19 gi|385802550|ref|YP_005838950.1| - 1.1e-05 25.2 0.2 6.1e-05 22.9 0.0 2.0 2 1 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain His_biosynth PF00977.21 gi|385802550|ref|YP_005838950.1| - 0.0005 19.6 0.0 0.0023 17.4 0.0 1.9 2 0 0 2 2 2 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|385802550|ref|YP_005838950.1| - 0.0049 16.1 0.0 0.0096 15.2 0.0 1.5 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.15 gi|385802550|ref|YP_005838950.1| - 0.04 13.3 1.9 0.5 9.7 0.4 2.2 1 1 0 2 2 2 0 Nitronate monooxygenase DUF1611_N PF17396.2 gi|385802550|ref|YP_005838950.1| - 0.07 13.4 0.1 0.74 10.1 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_N) Rossmann-like domain DNA_binding_1 PF01035.20 gi|385802551|ref|YP_005838951.1| - 5.4e-07 29.6 0.0 1.6e-06 28.2 0.0 1.7 2 0 0 2 2 2 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Nuc_rec_co-act PF08815.10 gi|385802551|ref|YP_005838951.1| - 0.018 14.9 1.5 0.031 14.1 0.5 1.9 2 0 0 2 2 2 0 Nuclear receptor coactivator Polyketide_cyc2 PF10604.9 gi|385802552|ref|YP_005838952.1| - 2.7e-22 79.6 0.2 3e-22 79.4 0.2 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|385802552|ref|YP_005838952.1| - 3.3e-07 30.6 0.0 5.2e-07 29.9 0.0 1.3 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.13 gi|385802552|ref|YP_005838952.1| - 0.083 12.6 0.0 0.14 11.9 0.0 1.6 1 1 0 1 1 1 0 Carbon monoxide dehydrogenase subunit G (CoxG) CPBP PF02517.16 gi|385802553|ref|YP_005838953.1| - 6.6e-12 45.6 16.7 1.4e-11 44.6 11.0 2.5 2 1 0 2 2 2 2 CPBP intramembrane metalloprotease DUF1524 PF07510.11 gi|385802553|ref|YP_005838953.1| - 0.097 12.5 0.3 0.14 12.1 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1524) Lon_C PF05362.13 gi|385802554|ref|YP_005838954.1| - 3.6e-32 111.6 2.7 5.6e-32 111.0 2.7 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|385802554|ref|YP_005838954.1| - 5.1e-27 94.9 0.0 1.3e-19 70.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|385802554|ref|YP_005838954.1| - 3e-17 62.7 0.1 1.1e-10 41.3 0.1 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|385802554|ref|YP_005838954.1| - 3.8e-14 52.7 0.0 7.2e-08 32.3 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.14 gi|385802554|ref|YP_005838954.1| - 3e-10 40.2 0.0 0.00078 19.4 0.0 2.8 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|385802554|ref|YP_005838954.1| - 7.3e-09 35.5 0.4 1.9e-08 34.2 0.4 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase MCM PF00493.23 gi|385802554|ref|YP_005838954.1| - 7.6e-07 28.5 0.0 0.035 13.2 0.0 2.3 2 0 0 2 2 2 2 MCM P-loop domain AAA PF00004.29 gi|385802554|ref|YP_005838954.1| - 2e-06 28.2 0.0 0.082 13.3 0.0 2.8 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|385802554|ref|YP_005838954.1| - 1.5e-05 24.8 0.1 0.0044 16.8 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain TIP49 PF06068.13 gi|385802554|ref|YP_005838954.1| - 5.2e-05 22.6 0.4 0.091 11.9 0.0 2.5 3 0 0 3 3 2 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|385802554|ref|YP_005838954.1| - 8.1e-05 22.9 0.0 0.0026 18.0 0.0 2.5 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|385802554|ref|YP_005838954.1| - 0.00013 22.1 0.0 0.18 12.0 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_7 PF12775.7 gi|385802554|ref|YP_005838954.1| - 0.00032 20.3 0.0 0.00064 19.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_3 PF07726.11 gi|385802554|ref|YP_005838954.1| - 0.00099 19.0 0.1 1.1 9.1 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_PrkA PF08298.11 gi|385802554|ref|YP_005838954.1| - 0.0013 17.8 0.0 0.086 11.7 0.0 2.2 2 0 0 2 2 2 1 PrkA AAA domain AAA_19 PF13245.6 gi|385802554|ref|YP_005838954.1| - 0.0023 18.3 0.0 0.69 10.2 0.0 2.6 2 0 0 2 2 2 1 AAA domain MCM_lid PF17855.1 gi|385802554|ref|YP_005838954.1| - 0.0033 17.8 0.5 0.01 16.3 0.0 2.0 2 0 0 2 2 2 1 MCM AAA-lid domain AAA_30 PF13604.6 gi|385802554|ref|YP_005838954.1| - 0.0034 17.1 0.0 0.083 12.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_2 PF07724.14 gi|385802554|ref|YP_005838954.1| - 0.0099 16.0 0.1 1.9 8.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) PhoH PF02562.16 gi|385802554|ref|YP_005838954.1| - 0.016 14.7 0.0 0.029 13.8 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein DUF815 PF05673.13 gi|385802554|ref|YP_005838954.1| - 0.025 13.7 0.0 0.047 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_33 PF13671.6 gi|385802554|ref|YP_005838954.1| - 0.026 14.7 0.0 0.069 13.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|385802554|ref|YP_005838954.1| - 0.041 14.4 0.0 0.21 12.2 0.0 2.3 2 0 0 2 2 1 0 AAA domain ABC_tran PF00005.27 gi|385802554|ref|YP_005838954.1| - 0.041 14.4 0.0 0.1 13.1 0.0 1.6 1 0 0 1 1 1 0 ABC transporter TrwB_AAD_bind PF10412.9 gi|385802554|ref|YP_005838954.1| - 0.055 12.4 0.0 0.086 11.7 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain IstB_IS21 PF01695.17 gi|385802554|ref|YP_005838954.1| - 0.067 12.9 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.12 gi|385802554|ref|YP_005838954.1| - 0.074 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.6 gi|385802554|ref|YP_005838954.1| - 0.12 12.7 0.0 0.44 10.9 0.0 1.9 1 0 0 1 1 1 0 AAA ATPase domain Parvo_NS1 PF01057.17 gi|385802554|ref|YP_005838954.1| - 0.14 11.2 0.0 0.23 10.5 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 CTP_transf_like PF01467.26 gi|385802555|ref|YP_005838955.1| - 4.8e-12 46.3 0.1 1.1e-11 45.1 0.1 1.7 1 1 0 1 1 1 1 Cytidylyltransferase-like YdfZ PF14001.6 gi|385802555|ref|YP_005838955.1| - 0.08 13.4 0.0 0.65 10.5 0.0 2.3 2 0 0 2 2 2 0 YdfZ protein SAM_adeno_trans PF01887.16 gi|385802556|ref|YP_005838956.1| - 8.6e-75 251.2 0.5 9.7e-75 251.0 0.5 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Cpn60_TCP1 PF00118.24 gi|385802557|ref|YP_005838957.1| - 2.6e-142 474.9 12.7 2.9e-142 474.8 12.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Glycos_transf_2 PF00535.26 gi|385802558|ref|YP_005838958.1| - 3.2e-11 43.4 0.0 4.5e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|385802558|ref|YP_005838958.1| - 5e-06 26.6 0.9 2.1e-05 24.5 0.9 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|385802558|ref|YP_005838958.1| - 0.00073 19.1 0.0 0.0026 17.3 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Methyltransf_25 PF13649.6 gi|385802559|ref|YP_005838959.1| - 4.4e-23 81.8 0.0 1e-22 80.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|385802559|ref|YP_005838959.1| - 5.1e-23 81.5 0.0 2.6e-22 79.3 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|385802559|ref|YP_005838959.1| - 4.5e-15 55.8 0.0 5.8e-15 55.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|385802559|ref|YP_005838959.1| - 6.7e-14 51.8 0.0 1.1e-13 51.1 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|385802559|ref|YP_005838959.1| - 1.8e-13 51.0 0.0 3.2e-13 50.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|385802559|ref|YP_005838959.1| - 2.6e-11 43.6 0.0 3.6e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|385802559|ref|YP_005838959.1| - 8.9e-06 25.4 0.0 1.3e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|385802559|ref|YP_005838959.1| - 1.3e-05 24.7 0.0 2.6e-05 23.7 0.0 1.3 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.11 gi|385802559|ref|YP_005838959.1| - 2.9e-05 23.1 0.0 4.5e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) UPF0020 PF01170.18 gi|385802559|ref|YP_005838959.1| - 9.1e-05 22.2 0.0 0.00068 19.4 0.0 2.2 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|385802559|ref|YP_005838959.1| - 0.00027 20.5 0.1 0.00074 19.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_4 PF02390.17 gi|385802559|ref|YP_005838959.1| - 0.00039 19.9 0.0 0.00073 19.0 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase RrnaAD PF00398.20 gi|385802559|ref|YP_005838959.1| - 0.00072 18.7 0.0 0.00088 18.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_15 PF09445.10 gi|385802559|ref|YP_005838959.1| - 0.00085 18.9 0.0 0.0012 18.4 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_29 PF03141.16 gi|385802559|ref|YP_005838959.1| - 0.0012 17.5 0.0 0.0016 17.1 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase PCMT PF01135.19 gi|385802559|ref|YP_005838959.1| - 0.0017 18.2 0.0 0.0024 17.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TPMT PF05724.11 gi|385802559|ref|YP_005838959.1| - 0.003 17.3 0.0 0.0048 16.6 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) NodS PF05401.11 gi|385802559|ref|YP_005838959.1| - 0.0032 17.1 0.0 0.0044 16.7 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) tRNA_U5-meth_tr PF05958.11 gi|385802559|ref|YP_005838959.1| - 0.0052 15.8 0.0 0.0076 15.3 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_20 PF12147.8 gi|385802559|ref|YP_005838959.1| - 0.0078 15.4 0.0 0.011 14.9 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase DUF938 PF06080.12 gi|385802559|ref|YP_005838959.1| - 0.022 14.5 0.0 0.33 10.7 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF938) Methyltransf_32 PF13679.6 gi|385802559|ref|YP_005838959.1| - 0.043 13.8 0.0 0.08 12.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.19 gi|385802559|ref|YP_005838959.1| - 0.11 12.6 0.0 0.25 11.4 0.0 1.6 1 1 1 2 2 2 0 FtsJ-like methyltransferase HTH_24 PF13412.6 gi|385802560|ref|YP_005838960.1| - 1.6e-06 27.5 0.3 6.7e-06 25.6 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|385802560|ref|YP_005838960.1| - 0.00093 19.0 0.1 0.0015 18.4 0.1 1.4 1 1 0 1 1 1 1 MarR family MarR PF01047.22 gi|385802560|ref|YP_005838960.1| - 0.0043 17.0 0.0 0.0062 16.4 0.0 1.3 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|385802560|ref|YP_005838960.1| - 0.0065 16.1 0.1 0.01 15.5 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_12 PF08461.10 gi|385802560|ref|YP_005838960.1| - 0.0082 16.1 0.3 0.032 14.2 0.1 2.0 2 1 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_20 PF12840.7 gi|385802560|ref|YP_005838960.1| - 0.01 15.9 0.4 0.066 13.3 0.3 1.9 1 1 1 2 2 2 0 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|385802560|ref|YP_005838960.1| - 0.013 15.4 0.0 0.02 14.7 0.0 1.3 1 1 0 1 1 1 0 TFIIE alpha subunit Peptidase_M28 PF04389.17 gi|385802560|ref|YP_005838960.1| - 0.1 12.2 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Peptidase family M28 Rrf2 PF02082.20 gi|385802560|ref|YP_005838960.1| - 0.11 12.8 0.0 0.16 12.4 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|385802560|ref|YP_005838960.1| - 0.12 12.4 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|385802560|ref|YP_005838960.1| - 0.12 12.3 0.1 0.18 11.8 0.1 1.3 1 0 0 1 1 1 0 HTH domain HTH_36 PF13730.6 gi|385802560|ref|YP_005838960.1| - 0.16 12.0 0.0 1.4 9.0 0.0 2.2 1 1 0 1 1 1 0 Helix-turn-helix domain Lactamase_B PF00753.27 gi|385802561|ref|YP_005838961.1| - 5.5e-10 39.6 4.6 1.1e-09 38.6 4.6 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily BLACT_WH PF17778.1 gi|385802561|ref|YP_005838961.1| - 6.4e-06 26.1 0.0 1.2e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase associated winged helix domain Lactamase_B_2 PF12706.7 gi|385802561|ref|YP_005838961.1| - 0.0011 18.5 0.4 0.0019 17.8 0.4 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain CxxCxxCC PF03692.15 gi|385802562|ref|YP_005838962.1| - 2.2e-12 47.5 2.5 3.7e-07 30.8 0.0 2.6 2 0 0 2 2 2 2 Putative zinc- or iron-chelating domain Ima1_N PF09779.9 gi|385802562|ref|YP_005838962.1| - 0.065 14.1 4.7 0.14 13.1 4.7 1.6 1 0 0 1 1 1 0 Ima1 N-terminal domain Presenilin PF01080.17 gi|385802562|ref|YP_005838962.1| - 1.4 7.6 3.2 1.7 7.3 3.2 1.2 1 0 0 1 1 1 0 Presenilin TRAM PF01938.20 gi|385802563|ref|YP_005838963.1| - 7.6e-13 48.2 1.5 1.4e-12 47.4 1.5 1.4 1 0 0 1 1 1 1 TRAM domain Hexapep PF00132.24 gi|385802563|ref|YP_005838963.1| - 0.062 13.1 0.2 0.11 12.2 0.2 1.4 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) Radical_SAM PF04055.21 gi|385802564|ref|YP_005838964.1| - 1.2e-12 48.6 0.0 3e-12 47.2 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily HHH PF00633.23 gi|385802564|ref|YP_005838964.1| - 9.6e-05 22.1 0.1 0.0003 20.5 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|385802564|ref|YP_005838964.1| - 0.00056 20.1 0.0 0.0013 18.9 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|385802564|ref|YP_005838964.1| - 0.025 15.2 0.0 0.09 13.4 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix domain HHH_8 PF14716.6 gi|385802564|ref|YP_005838964.1| - 0.16 12.3 0.0 0.39 11.1 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix domain DUF429 PF04250.13 gi|385802565|ref|YP_005838965.1| - 2.3e-07 30.8 0.1 3.7e-07 30.1 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF429) EamA PF00892.20 gi|385802566|ref|YP_005838966.1| - 1.9e-34 118.8 42.1 4.9e-21 75.3 12.6 2.0 2 0 0 2 2 2 2 EamA-like transporter family Nuc_sug_transp PF04142.15 gi|385802566|ref|YP_005838966.1| - 0.0046 16.2 1.3 1.6 7.8 1.7 2.3 2 0 0 2 2 2 2 Nucleotide-sugar transporter TPT PF03151.16 gi|385802566|ref|YP_005838966.1| - 0.031 13.6 16.1 0.24 10.7 5.9 2.2 1 1 1 2 2 2 0 Triose-phosphate Transporter family TMEM234 PF10639.9 gi|385802566|ref|YP_005838966.1| - 3.2 7.8 13.5 0.15 12.1 1.2 2.7 2 1 0 2 2 2 0 Putative transmembrane family 234 zf-Di19 PF05605.12 gi|385802567|ref|YP_005838967.1| - 0.0084 16.4 0.1 0.015 15.6 0.1 1.5 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding DUF4468 PF14730.6 gi|385802567|ref|YP_005838967.1| - 0.18 12.1 0.0 0.23 11.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4468) with TBP-like fold HSP20 PF00011.21 gi|385802568|ref|YP_005838968.1| - 3.6e-07 30.3 0.0 6.8e-07 29.4 0.0 1.5 1 1 0 1 1 1 1 Hsp20/alpha crystallin family FKBP26_C PF18046.1 gi|385802568|ref|YP_005838968.1| - 0.00082 19.4 0.0 0.0055 16.8 0.0 2.0 2 0 0 2 2 2 1 FKBP26_C-terminal DDE_Tnp_IS66 PF03050.14 gi|385802569|ref|YP_005838969.1| - 8.7e-49 166.5 0.1 8.7e-49 166.5 0.1 1.8 2 0 0 2 2 2 1 Transposase IS66 family ZapB PF06005.12 gi|385802569|ref|YP_005838969.1| - 5.4e-10 39.6 6.1 2.2e-09 37.6 6.1 2.0 1 0 0 1 1 1 1 Cell division protein ZapB zf-IS66 PF13005.7 gi|385802569|ref|YP_005838969.1| - 3.4e-06 27.3 4.1 8.8e-06 26.0 4.1 1.7 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 YabA PF06156.13 gi|385802569|ref|YP_005838969.1| - 2e-05 25.1 2.7 6e-05 23.6 2.7 1.7 1 0 0 1 1 1 1 Initiation control protein YabA CASP_C PF08172.12 gi|385802569|ref|YP_005838969.1| - 0.00036 20.0 1.2 0.00066 19.1 1.2 1.3 1 0 0 1 1 1 1 CASP C terminal bZIP_1 PF00170.21 gi|385802569|ref|YP_005838969.1| - 0.0006 19.9 7.6 0.0012 18.9 7.6 1.5 1 0 0 1 1 1 1 bZIP transcription factor SlyX PF04102.12 gi|385802569|ref|YP_005838969.1| - 0.0011 19.5 3.9 0.0033 18.0 3.9 1.9 1 0 0 1 1 1 1 SlyX Cnn_1N PF07989.11 gi|385802569|ref|YP_005838969.1| - 0.0039 17.3 6.4 0.009 16.2 6.4 1.6 1 0 0 1 1 1 1 Centrosomin N-terminal motif 1 JIP_LZII PF16471.5 gi|385802569|ref|YP_005838969.1| - 0.0069 16.5 2.9 0.018 15.2 2.9 1.7 1 0 0 1 1 1 1 JNK-interacting protein leucine zipper II NRBF2 PF08961.10 gi|385802569|ref|YP_005838969.1| - 0.0074 15.9 7.6 0.016 14.9 7.6 1.5 1 0 0 1 1 1 1 Nuclear receptor-binding factor 2, autophagy regulator GAS PF13851.6 gi|385802569|ref|YP_005838969.1| - 0.0086 15.4 6.5 0.016 14.6 6.5 1.3 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding TSC22 PF01166.18 gi|385802569|ref|YP_005838969.1| - 0.012 16.0 6.7 0.012 16.0 6.7 3.3 2 1 1 3 3 3 0 TSC-22/dip/bun family DDE_Tnp_IS240 PF13610.6 gi|385802569|ref|YP_005838969.1| - 0.013 15.7 1.1 0.06 13.6 0.0 2.3 2 1 0 2 2 2 0 DDE domain CCDC106 PF15794.5 gi|385802569|ref|YP_005838969.1| - 0.017 14.9 2.9 0.033 13.9 2.9 1.4 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 106 DivIC PF04977.15 gi|385802569|ref|YP_005838969.1| - 0.018 14.8 4.3 0.018 14.8 4.3 2.2 2 0 0 2 2 1 0 Septum formation initiator Ead_Ea22 PF13935.6 gi|385802569|ref|YP_005838969.1| - 0.023 15.4 0.8 0.15 12.7 0.1 2.5 2 0 0 2 2 2 0 Ead/Ea22-like protein HSBP1 PF06825.12 gi|385802569|ref|YP_005838969.1| - 0.028 14.3 0.4 0.054 13.4 0.4 1.4 1 0 0 1 1 1 0 Heat shock factor binding protein 1 DUF4201 PF13870.6 gi|385802569|ref|YP_005838969.1| - 0.028 14.1 4.8 0.047 13.4 4.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) SKA1 PF07160.12 gi|385802569|ref|YP_005838969.1| - 0.043 13.7 1.0 0.079 12.8 1.0 1.4 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 1 Taxilin PF09728.9 gi|385802569|ref|YP_005838969.1| - 0.05 12.8 5.1 0.078 12.1 5.1 1.3 1 0 0 1 1 1 0 Myosin-like coiled-coil protein Synaptobrevin PF00957.21 gi|385802569|ref|YP_005838969.1| - 0.07 12.9 1.9 0.12 12.1 1.9 1.3 1 0 0 1 1 1 0 Synaptobrevin eIF-3c_N PF05470.12 gi|385802569|ref|YP_005838969.1| - 0.074 11.3 0.2 0.078 11.3 0.2 1.1 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit 8 N-terminus V_ATPase_I PF01496.19 gi|385802569|ref|YP_005838969.1| - 0.086 10.8 1.2 0.12 10.2 1.2 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Jnk-SapK_ap_N PF09744.9 gi|385802569|ref|YP_005838969.1| - 0.12 12.6 7.1 0.38 11.0 7.1 1.8 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 ADIP PF11559.8 gi|385802569|ref|YP_005838969.1| - 0.13 12.4 7.1 0.27 11.3 7.1 1.5 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding CENP-H PF05837.12 gi|385802569|ref|YP_005838969.1| - 0.14 12.6 5.7 0.056 13.8 2.7 1.8 2 0 0 2 2 1 0 Centromere protein H (CENP-H) Spc24 PF08286.11 gi|385802569|ref|YP_005838969.1| - 0.18 12.0 2.4 0.43 10.8 2.4 1.6 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 Uds1 PF15456.6 gi|385802569|ref|YP_005838969.1| - 0.19 11.9 3.5 0.45 10.7 3.5 1.6 1 0 0 1 1 1 0 Up-regulated During Septation KLRAQ PF10205.9 gi|385802569|ref|YP_005838969.1| - 0.22 11.8 4.5 0.46 10.8 4.5 1.4 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein Fmp27_WPPW PF10359.9 gi|385802569|ref|YP_005838969.1| - 0.25 10.1 2.0 0.35 9.7 2.0 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain TMF_DNA_bd PF12329.8 gi|385802569|ref|YP_005838969.1| - 0.26 11.3 8.1 0.57 10.2 8.1 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Wtap PF17098.5 gi|385802569|ref|YP_005838969.1| - 0.31 10.9 5.2 0.55 10.1 5.2 1.4 1 0 0 1 1 1 0 WTAP/Mum2p family ATG16 PF08614.11 gi|385802569|ref|YP_005838969.1| - 0.35 11.1 11.4 0.21 11.8 8.9 1.9 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) Sipho_Gp157 PF05565.11 gi|385802569|ref|YP_005838969.1| - 0.38 10.7 5.4 0.7 9.9 5.4 1.4 1 0 0 1 1 1 0 Siphovirus Gp157 HALZ PF02183.18 gi|385802569|ref|YP_005838969.1| - 0.48 10.7 9.1 2.6 8.4 6.2 2.6 2 0 0 2 2 2 0 Homeobox associated leucine zipper FlaC_arch PF05377.11 gi|385802569|ref|YP_005838969.1| - 0.49 10.8 3.5 1.2 9.6 3.5 1.7 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) Atg14 PF10186.9 gi|385802569|ref|YP_005838969.1| - 0.49 9.4 3.6 0.78 8.8 3.6 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 bZIP_2 PF07716.15 gi|385802569|ref|YP_005838969.1| - 0.54 10.4 13.0 2 8.6 5.0 2.5 1 1 1 2 2 2 0 Basic region leucine zipper Occludin_ELL PF07303.13 gi|385802569|ref|YP_005838969.1| - 0.58 10.9 4.3 0.64 10.8 1.8 2.3 3 0 0 3 3 2 0 Occludin homology domain EzrA PF06160.12 gi|385802569|ref|YP_005838969.1| - 0.69 8.0 4.5 1 7.4 4.5 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA DUF4988 PF16378.5 gi|385802569|ref|YP_005838969.1| - 0.85 9.3 3.6 6.8 6.3 1.6 2.2 2 0 0 2 2 2 0 Domain of unknown function EMP24_GP25L PF01105.24 gi|385802569|ref|YP_005838969.1| - 1.5 8.7 4.3 3 7.7 4.3 1.4 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD betaPIX_CC PF16523.5 gi|385802569|ref|YP_005838969.1| - 1.9 8.3 6.2 2.6 7.9 1.9 2.4 2 0 0 2 2 2 0 betaPIX coiled coil APG6_N PF17675.1 gi|385802569|ref|YP_005838969.1| - 2 8.9 10.6 0.19 12.3 5.5 1.9 2 0 0 2 2 1 0 Apg6 coiled-coil region GIT_CC PF16559.5 gi|385802569|ref|YP_005838969.1| - 2.3 8.1 6.2 6.9 6.6 6.1 1.8 1 1 0 1 1 1 0 GIT coiled-coil Rho guanine nucleotide exchange factor Shugoshin_N PF07558.11 gi|385802569|ref|YP_005838969.1| - 2.7 8.0 9.3 1.1 9.2 3.4 2.3 1 1 1 2 2 2 0 Shugoshin N-terminal coiled-coil region SpoVR PF04293.13 gi|385802569|ref|YP_005838969.1| - 3 6.4 4.6 4.4 5.9 4.6 1.2 1 0 0 1 1 1 0 SpoVR like protein DUF3450 PF11932.8 gi|385802569|ref|YP_005838969.1| - 5.4 6.2 7.4 3.4 6.9 4.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Med21 PF11221.8 gi|385802569|ref|YP_005838969.1| - 5.7 7.2 10.7 0.29 11.4 4.4 2.0 2 0 0 2 2 1 0 Subunit 21 of Mediator complex HlyD_2 PF12700.7 gi|385802569|ref|YP_005838969.1| - 7.4 5.2 6.3 3 6.5 3.5 1.6 2 0 0 2 2 2 0 HlyD family secretion protein Paralemmin PF03285.15 gi|385802569|ref|YP_005838969.1| - 8.4 5.9 9.3 3.5 7.1 6.9 1.5 1 1 0 1 1 1 0 Paralemmin OrfB_IS605 PF01385.19 gi|385802570|ref|YP_005838970.1| - 6.5e-24 84.5 0.0 1.5e-23 83.3 0.0 1.6 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|385802570|ref|YP_005838970.1| - 3.8e-20 71.6 1.2 9.6e-20 70.3 1.2 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|385802570|ref|YP_005838970.1| - 0.012 15.9 1.0 0.03 14.6 1.0 1.7 1 0 0 1 1 1 0 C1 domain Ribosomal_L37ae PF01780.19 gi|385802570|ref|YP_005838970.1| - 0.085 12.9 0.5 0.23 11.6 0.5 1.6 1 0 0 1 1 1 0 Ribosomal L37ae protein family NUDIX PF00293.28 gi|385802571|ref|YP_005838971.1| - 2.2e-12 47.2 0.1 3.1e-12 46.6 0.1 1.3 1 1 0 1 1 1 1 NUDIX domain Alpha_TIF PF02232.15 gi|385802572|ref|YP_005838972.1| - 0.12 11.4 0.0 0.15 11.1 0.0 1.1 1 0 0 1 1 1 0 Alpha trans-inducing protein (Alpha-TIF) Aldo_ket_red PF00248.21 gi|385802574|ref|YP_005838974.1| - 1.8e-29 102.9 0.0 1.1e-21 77.4 0.0 3.1 2 1 0 2 2 2 2 Aldo/keto reductase family NAD_binding_10 PF13460.6 gi|385802575|ref|YP_005838975.1| - 7.1e-14 52.1 0.0 1.1e-13 51.5 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|385802575|ref|YP_005838975.1| - 2.8e-12 46.6 0.1 4e-12 46.1 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family TrkA_N PF02254.18 gi|385802575|ref|YP_005838975.1| - 9.7e-09 35.5 0.1 2.7e-08 34.1 0.0 1.8 2 0 0 2 2 2 1 TrkA-N domain 3Beta_HSD PF01073.19 gi|385802575|ref|YP_005838975.1| - 3.9e-07 29.4 0.0 4.9e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family ApbA PF02558.16 gi|385802575|ref|YP_005838975.1| - 4.1e-05 23.3 0.1 6.8e-05 22.6 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|385802575|ref|YP_005838975.1| - 0.00043 19.9 0.1 0.0015 18.1 0.1 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.27 gi|385802575|ref|YP_005838975.1| - 0.00044 20.8 0.4 0.00086 19.8 0.4 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase RmlD_sub_bind PF04321.17 gi|385802575|ref|YP_005838975.1| - 0.0026 16.9 0.1 0.0058 15.8 0.1 1.5 1 0 0 1 1 1 1 RmlD substrate binding domain F420_oxidored PF03807.17 gi|385802575|ref|YP_005838975.1| - 0.0069 16.9 0.1 0.015 15.8 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.14 gi|385802575|ref|YP_005838975.1| - 0.017 14.3 0.4 0.028 13.7 0.4 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GDP_Man_Dehyd PF16363.5 gi|385802575|ref|YP_005838975.1| - 0.042 13.2 0.2 1.5 8.1 0.0 2.2 2 0 0 2 2 2 0 GDP-mannose 4,6 dehydratase Rossmann-like PF10727.9 gi|385802575|ref|YP_005838975.1| - 0.054 13.4 0.3 0.13 12.2 0.3 1.6 1 0 0 1 1 1 0 Rossmann-like domain NAD_binding_2 PF03446.15 gi|385802575|ref|YP_005838975.1| - 0.06 13.5 0.1 0.11 12.6 0.1 1.6 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF1731 PF08338.11 gi|385802575|ref|YP_005838975.1| - 0.2 11.5 0.0 0.48 10.3 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1731) DUF3834 PF12916.7 gi|385802576|ref|YP_005838976.1| - 0.054 12.8 0.2 0.06 12.6 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3834) DUF1427 PF07235.11 gi|385802579|ref|YP_005838979.1| - 0.13 12.2 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1427) URO-D PF01208.17 gi|385802580|ref|YP_005838980.1| - 0.12 11.6 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 Uroporphyrinogen decarboxylase (URO-D) T2SSF PF00482.23 gi|385802581|ref|YP_005838981.1| - 0.0043 17.0 0.4 0.041 13.8 0.2 2.8 2 1 0 2 2 2 1 Type II secretion system (T2SS), protein F T2SSE PF00437.20 gi|385802582|ref|YP_005838982.1| - 2.4e-31 108.8 0.4 4.3e-31 108.0 0.4 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|385802582|ref|YP_005838982.1| - 0.02 15.3 0.8 0.089 13.2 0.6 2.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|385802582|ref|YP_005838982.1| - 0.033 13.9 0.1 0.095 12.5 0.1 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain cobW PF02492.19 gi|385802582|ref|YP_005838982.1| - 0.056 13.0 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|385802582|ref|YP_005838982.1| - 0.078 12.2 0.0 0.17 11.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|385802582|ref|YP_005838982.1| - 0.098 12.9 0.3 4 7.7 0.2 2.7 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|385802582|ref|YP_005838982.1| - 0.1 12.3 1.4 0.22 11.2 0.3 2.2 3 0 0 3 3 3 0 AAA domain AAA_27 PF13514.6 gi|385802582|ref|YP_005838982.1| - 0.11 12.1 0.0 1.3 8.5 0.0 2.2 1 1 1 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|385802582|ref|YP_005838982.1| - 0.12 12.9 0.0 0.26 11.8 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_14 PF13173.6 gi|385802582|ref|YP_005838982.1| - 0.22 11.6 0.0 0.42 10.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain TTc_toxin_rep PF18807.1 gi|385802585|ref|YP_005838985.1| - 0.041 13.7 0.8 0.13 12.1 0.8 1.8 1 0 0 1 1 1 0 Tripartite Tc toxins repeat PGF-CTERM PF18204.1 gi|385802586|ref|YP_005838986.1| - 7.9e-07 28.9 7.5 7.9e-07 28.9 7.5 2.1 2 0 0 2 2 2 1 PGF-CTERM motif MG2 PF01835.19 gi|385802586|ref|YP_005838986.1| - 4e-05 24.0 2.7 0.17 12.3 0.1 4.3 4 1 0 4 4 4 2 MG2 domain Gmad2 PF10648.9 gi|385802586|ref|YP_005838986.1| - 4.5e-05 23.6 2.9 0.012 15.8 0.2 4.2 3 0 0 3 3 3 1 Immunoglobulin-like domain of bacterial spore germination Trypan_PARP PF05887.11 gi|385802586|ref|YP_005838986.1| - 0.0005 20.1 18.8 0.0011 18.9 15.6 2.5 2 0 0 2 2 2 1 Procyclic acidic repetitive protein (PARP) Y_Y_Y PF07495.13 gi|385802586|ref|YP_005838986.1| - 0.013 15.5 0.2 8.6 6.4 0.0 3.0 2 0 0 2 2 2 0 Y_Y_Y domain bMG6 PF17962.1 gi|385802586|ref|YP_005838986.1| - 0.2 11.8 1.2 18 5.5 0.1 3.5 3 0 0 3 3 3 0 Bacterial macroglobulin domain 6 FlgD_ig PF13860.6 gi|385802586|ref|YP_005838986.1| - 2.9 7.8 19.9 0.027 14.3 3.3 4.9 4 2 0 4 4 4 0 FlgD Ig-like domain Pox_A9 PF04835.12 gi|385802587|ref|YP_005838987.1| - 0.24 11.6 0.3 0.24 11.6 0.3 2.3 3 0 0 3 3 3 0 A9 protein conserved region TetR_N PF00440.23 gi|385802588|ref|YP_005838988.1| - 5e-11 42.2 0.1 1.4e-10 40.7 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.6 gi|385802588|ref|YP_005838988.1| - 1.4e-10 41.4 1.2 6.6e-10 39.2 0.6 2.1 2 0 0 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_C_37 PF18665.1 gi|385802588|ref|YP_005838988.1| - 0.001 19.7 0.0 0.0058 17.2 0.0 2.0 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|385802588|ref|YP_005838988.1| - 0.0023 18.2 0.1 0.0068 16.7 0.1 1.7 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_7 PF14246.6 gi|385802588|ref|YP_005838988.1| - 0.0025 17.8 0.1 0.0046 17.0 0.1 1.4 1 0 0 1 1 1 1 AefR-like transcriptional repressor, C-terminal domain TetR_C_31 PF17940.1 gi|385802588|ref|YP_005838988.1| - 0.0037 17.5 0.6 0.01 16.1 0.4 1.8 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_5 PF08360.11 gi|385802588|ref|YP_005838988.1| - 0.0043 17.2 0.0 0.0075 16.5 0.0 1.3 1 0 0 1 1 1 1 QacR-like protein, C-terminal region TetR_C_13 PF16925.5 gi|385802588|ref|YP_005838988.1| - 0.059 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_11 PF16859.5 gi|385802588|ref|YP_005838988.1| - 0.073 13.4 1.2 0.35 11.2 1.1 2.2 2 1 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain DUF4837 PF16125.5 gi|385802588|ref|YP_005838988.1| - 0.18 10.8 0.1 1.9 7.4 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4837) CARDB PF07705.11 gi|385802589|ref|YP_005838989.1| - 1.2e-12 47.9 13.3 0.0016 18.7 0.5 5.2 4 1 0 4 4 4 4 CARDB NPCBM_assoc PF10633.9 gi|385802589|ref|YP_005838989.1| - 2.9e-10 40.3 21.9 0.0072 16.6 1.1 5.8 5 2 0 5 5 5 4 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|385802589|ref|YP_005838989.1| - 5.2e-06 26.7 23.0 0.056 13.7 1.7 6.3 3 3 3 6 6 6 3 Domain of unknown function DUF11 PHTB1_C PF14728.6 gi|385802589|ref|YP_005838989.1| - 0.0025 17.0 0.0 0.81 8.7 0.0 3.2 3 0 0 3 3 3 1 PTHB1 C-terminus DUF4101 PF13355.6 gi|385802589|ref|YP_005838989.1| - 0.95 9.9 3.4 16 6.0 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF4101) MMPL PF03176.15 gi|385802590|ref|YP_005838990.1| - 7.9e-40 136.8 16.5 3.1e-21 75.6 7.3 2.5 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|385802590|ref|YP_005838990.1| - 2.4e-07 30.7 0.0 2.4e-07 30.7 0.0 2.4 3 0 0 3 3 3 1 Sterol-sensing domain of SREBP cleavage-activation ACR_tran PF00873.19 gi|385802590|ref|YP_005838990.1| - 4e-05 21.5 11.6 0.0031 15.2 1.5 2.2 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family Patched PF02460.18 gi|385802590|ref|YP_005838990.1| - 8.9e-05 20.8 1.6 0.0026 15.9 0.5 2.7 3 0 0 3 3 3 2 Patched family Usp PF00582.26 gi|385802591|ref|YP_005838991.1| - 9.8e-28 97.4 0.3 1.6e-27 96.8 0.3 1.3 1 0 0 1 1 1 1 Universal stress protein family Phosphodiest PF01663.22 gi|385802592|ref|YP_005838992.1| - 1.4e-56 192.7 0.2 1.6e-56 192.5 0.2 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|385802592|ref|YP_005838992.1| - 0.00056 19.4 1.2 0.0037 16.7 0.4 2.4 2 1 0 2 2 2 1 Sulfatase DUF2063 PF09836.9 gi|385802592|ref|YP_005838992.1| - 0.094 13.0 0.1 0.21 11.9 0.1 1.5 1 0 0 1 1 1 0 Putative DNA-binding domain SHOCT PF09851.9 gi|385802593|ref|YP_005838993.1| - 6.8e-08 32.0 0.0 1e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|385802593|ref|YP_005838993.1| - 0.0016 18.4 0.1 0.0027 17.7 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) CdvA PF18822.1 gi|385802593|ref|YP_005838993.1| - 0.003 17.4 0.2 0.0045 16.8 0.2 1.2 1 0 0 1 1 1 1 CdvA-like coiled-coil domain VbhA PF18495.1 gi|385802593|ref|YP_005838993.1| - 0.05 13.5 0.1 0.086 12.7 0.1 1.3 1 0 0 1 1 1 0 Antitoxin VbhA DUF2583 PF10762.9 gi|385802593|ref|YP_005838993.1| - 0.28 11.6 2.2 1.3 9.5 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2583) UL45 PF05473.12 gi|385802593|ref|YP_005838993.1| - 2.4 7.8 6.9 11 5.6 0.6 2.4 2 1 0 2 2 2 0 UL45 protein, carbohydrate-binding C-type lectin-like FXMRP1_C_core PF12235.8 gi|385802594|ref|YP_005838994.1| - 0.01 16.5 2.8 0.01 16.5 2.8 1.8 2 0 0 2 2 2 0 Fragile X-related 1 protein core C terminal DUF4858 PF16150.5 gi|385802594|ref|YP_005838994.1| - 0.14 12.2 0.2 7.6 6.5 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4858) DNA_pol_B_thumb PF14791.6 gi|385802595|ref|YP_005838995.1| - 1.6e-22 79.4 0.0 4.7e-22 77.9 0.0 1.8 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.6 gi|385802595|ref|YP_005838995.1| - 2.7e-16 59.7 6.7 8.5e-14 51.7 1.1 4.2 3 1 1 4 4 4 1 Helix-hairpin-helix domain HHH_5 PF14520.6 gi|385802595|ref|YP_005838995.1| - 1.2e-14 54.6 1.7 1.2e-11 45.1 0.1 3.0 2 0 0 2 2 2 2 Helix-hairpin-helix domain PHP PF02811.19 gi|385802595|ref|YP_005838995.1| - 3.6e-07 30.6 0.0 6.8e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 PHP domain DNA_pol_lambd_f PF10391.9 gi|385802595|ref|YP_005838995.1| - 0.00031 20.5 0.0 0.0013 18.5 0.0 2.2 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.7 gi|385802595|ref|YP_005838995.1| - 0.00057 19.9 4.0 0.45 10.7 0.1 4.4 2 1 2 4 4 4 2 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.6 gi|385802595|ref|YP_005838995.1| - 0.0063 16.7 0.4 0.032 14.4 0.0 2.4 3 0 0 3 3 3 1 DNA polymerase beta palm HHH PF00633.23 gi|385802595|ref|YP_005838995.1| - 0.16 11.9 3.0 0.4 10.6 0.1 3.4 3 1 1 4 4 4 0 Helix-hairpin-helix motif Mut7-C PF01927.16 gi|385802596|ref|YP_005838996.1| - 6.8e-48 162.5 0.1 9.2e-48 162.1 0.1 1.2 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|385802596|ref|YP_005838996.1| - 7.9e-07 28.7 0.1 0.0002 21.0 0.1 2.4 1 1 1 2 2 2 2 Domain of unknown function (DUF5615) PIN_10 PF18478.1 gi|385802596|ref|YP_005838996.1| - 0.13 12.5 0.1 0.41 10.9 0.1 1.9 1 1 0 1 1 1 0 PIN like domain MtrB PF05440.12 gi|385802596|ref|YP_005838996.1| - 0.14 12.6 0.0 0.24 11.8 0.0 1.4 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase subunit B Virul_fac_BrkB PF03631.15 gi|385802597|ref|YP_005838997.1| - 2.6 7.6 11.9 5.8 6.4 11.8 1.6 1 1 0 1 1 1 0 Virulence factor BrkB SOG2 PF10428.9 gi|385802597|ref|YP_005838997.1| - 4.1 6.5 11.3 5.4 6.1 11.3 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein CPBP PF02517.16 gi|529167402|ref|YP_005838999.2| - 8.9e-06 26.0 5.7 0.00015 22.1 5.7 2.2 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease SBF PF01758.16 gi|385802600|ref|YP_005839000.1| - 6.9e-33 114.0 14.0 1.4e-32 113.0 14.0 1.5 1 0 0 1 1 1 1 Sodium Bile acid symporter family Sugarporin_N PF11471.8 gi|385802600|ref|YP_005839000.1| - 0.45 10.5 1.4 1.9 8.5 0.0 2.8 3 0 0 3 3 3 0 Maltoporin periplasmic N-terminal extension DDE_Tnp_1 PF01609.21 gi|385802601|ref|YP_005839001.1| - 2.3e-14 53.5 0.0 4.3e-14 52.7 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.6 gi|385802601|ref|YP_005839001.1| - 0.00016 20.1 0.0 0.00021 19.7 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain group 1 NPFF PF15085.6 gi|385802601|ref|YP_005839001.1| - 0.14 12.5 0.0 0.32 11.4 0.0 1.5 1 0 0 1 1 1 0 Neuropeptide FF Nre_N PF04894.12 gi|385802602|ref|YP_005839002.1| - 3.8e-93 312.2 0.0 4.6e-93 311.9 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|385802602|ref|YP_005839002.1| - 5.2e-35 119.7 0.0 8.1e-35 119.1 0.0 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal TFIIB PF00382.19 gi|385802603|ref|YP_005839003.1| - 2.6e-45 152.3 1.7 2e-25 88.7 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|385802603|ref|YP_005839003.1| - 0.0038 16.7 0.1 0.009 15.5 0.1 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|385802603|ref|YP_005839003.1| - 0.026 14.1 0.8 0.38 10.3 0.1 3.2 2 1 1 3 3 3 0 Sigma-70, region 4 HTH_23 PF13384.6 gi|385802603|ref|YP_005839003.1| - 0.062 13.1 0.2 0.78 9.6 0.1 2.9 2 0 0 2 2 2 0 Homeodomain-like domain HARE-HTH PF05066.13 gi|385802603|ref|YP_005839003.1| - 0.11 12.9 0.1 0.95 9.9 0.1 2.3 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain RVT_3 PF13456.6 gi|385802604|ref|YP_005839004.1| - 1.3e-26 92.8 0.0 1.7e-26 92.4 0.0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|385802604|ref|YP_005839004.1| - 5.6e-12 46.0 0.0 1.4e-11 44.7 0.0 1.6 1 1 0 1 1 1 1 RNase H ChitinaseA_N PF08329.10 gi|385802604|ref|YP_005839004.1| - 0.17 11.5 0.0 0.34 10.6 0.0 1.4 1 0 0 1 1 1 0 Chitinase A, N-terminal domain Phage_int_SAM_4 PF13495.6 gi|385802605|ref|YP_005839005.1| - 0.057 13.9 0.1 0.1 13.1 0.1 1.4 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain PadR PF03551.14 gi|385802606|ref|YP_005839006.1| - 5.3e-18 64.8 0.3 7.8e-18 64.2 0.3 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|385802606|ref|YP_005839006.1| - 0.00016 22.1 0.1 0.00041 20.8 0.1 1.8 1 1 0 1 1 1 1 Winged helix DNA-binding domain RTP PF02334.16 gi|385802606|ref|YP_005839006.1| - 0.00096 19.8 0.0 0.0012 19.4 0.0 1.3 1 0 0 1 1 1 1 Replication terminator protein DUF1495 PF07381.11 gi|385802606|ref|YP_005839006.1| - 0.0071 16.1 0.0 0.01 15.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|385802606|ref|YP_005839006.1| - 0.013 15.5 0.0 0.021 14.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DUF4364 PF14277.6 gi|385802606|ref|YP_005839006.1| - 0.049 13.4 0.0 0.064 13.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Rio2_N PF09202.11 gi|385802606|ref|YP_005839006.1| - 0.086 13.1 0.1 0.15 12.3 0.1 1.4 1 0 0 1 1 1 0 Rio2, N-terminal FUR PF01475.19 gi|385802606|ref|YP_005839006.1| - 0.09 12.9 0.0 0.1 12.8 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family Pyrophosphatase PF00719.19 gi|385802607|ref|YP_005839007.1| - 5.5e-50 169.3 0.8 6.3e-50 169.1 0.8 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase Rhomboid PF01694.22 gi|385802609|ref|YP_005839009.1| - 1.9e-31 109.1 17.8 1.9e-31 109.1 17.8 1.4 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.16 gi|385802609|ref|YP_005839009.1| - 5.5e-12 45.6 9.4 8.3e-12 45.1 9.4 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.10 gi|385802609|ref|YP_005839009.1| - 0.00048 20.7 1.0 0.00088 19.8 0.6 1.7 1 1 0 1 1 1 1 Eukaryotic integral membrane protein (DUF1751) zf_UBZ PF18439.1 gi|385802609|ref|YP_005839009.1| - 1.1 8.9 5.4 7.3 6.3 0.7 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Endonuclease_5 PF04493.14 gi|385802610|ref|YP_005839010.1| - 4.2e-58 196.3 0.0 5.5e-58 195.9 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.16 gi|385802610|ref|YP_005839010.1| - 0.027 13.9 0.5 2.4 7.5 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function DUF99 adh_short PF00106.25 gi|385802611|ref|YP_005839011.1| - 1.5e-49 168.1 0.0 2.1e-49 167.6 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|385802611|ref|YP_005839011.1| - 2.6e-40 138.4 0.0 3.7e-40 137.9 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|385802611|ref|YP_005839011.1| - 3.5e-13 49.9 0.0 5.5e-13 49.2 0.0 1.3 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.10 gi|385802611|ref|YP_005839011.1| - 5e-10 39.2 0.0 7.3e-10 38.7 0.0 1.1 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) Epimerase PF01370.21 gi|385802611|ref|YP_005839011.1| - 1.7e-05 24.4 0.0 0.00019 21.0 0.0 2.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|385802611|ref|YP_005839011.1| - 0.011 14.9 0.0 0.022 13.8 0.0 1.5 1 0 0 1 1 1 0 RmlD substrate binding domain ArsA_ATPase PF02374.15 gi|385802612|ref|YP_005839012.1| - 1.2e-81 274.2 0.1 1.5e-54 185.3 0.0 2.9 2 1 0 2 2 2 2 Anion-transporting ATPase CbiA PF01656.23 gi|385802612|ref|YP_005839012.1| - 3.3e-08 33.6 0.0 6e-08 32.8 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|385802612|ref|YP_005839012.1| - 5.5e-07 29.7 0.0 1.5e-05 25.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|385802612|ref|YP_005839012.1| - 0.00016 21.2 0.7 0.0037 16.7 0.0 2.8 3 0 0 3 3 3 1 NUBPL iron-transfer P-loop NTPase SRP54 PF00448.22 gi|385802612|ref|YP_005839012.1| - 0.0011 18.6 0.3 0.42 10.2 0.5 2.5 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain CBP_BcsQ PF06564.12 gi|385802612|ref|YP_005839012.1| - 0.0019 17.7 0.0 0.0036 16.8 0.0 1.4 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Zeta_toxin PF06414.12 gi|385802612|ref|YP_005839012.1| - 0.0084 15.4 0.1 0.028 13.7 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin AAA_25 PF13481.6 gi|385802612|ref|YP_005839012.1| - 0.02 14.5 1.9 0.1 12.2 0.1 2.7 3 0 0 3 3 3 0 AAA domain Fer4_NifH PF00142.18 gi|385802612|ref|YP_005839012.1| - 0.023 14.2 0.0 0.036 13.5 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family IstB_IS21 PF01695.17 gi|385802612|ref|YP_005839012.1| - 0.08 12.7 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein PhoH PF02562.16 gi|385802612|ref|YP_005839012.1| - 0.18 11.2 0.0 0.3 10.5 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein Aminotran_1_2 PF00155.21 gi|385802613|ref|YP_005839013.1| - 7.1e-51 173.5 0.0 8.5e-51 173.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|385802613|ref|YP_005839013.1| - 1.7e-05 24.0 2.8 0.00015 20.9 1.5 2.5 2 1 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|385802613|ref|YP_005839013.1| - 0.026 13.8 0.1 0.037 13.3 0.1 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase Aminotran_3 PF00202.21 gi|385802613|ref|YP_005839013.1| - 0.034 12.8 0.0 0.044 12.4 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-III Cys_Met_Meta_PP PF01053.20 gi|385802613|ref|YP_005839013.1| - 0.14 10.7 0.1 0.2 10.2 0.1 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme CinA PF02464.17 gi|385802614|ref|YP_005839014.1| - 1e-54 184.3 0.4 1.2e-54 184.1 0.4 1.0 1 0 0 1 1 1 1 Competence-damaged protein YdjM PF04307.14 gi|385802615|ref|YP_005839015.1| - 5.5e-07 29.1 11.5 5.3e-06 25.8 11.5 2.5 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|385802615|ref|YP_005839015.1| - 0.0088 16.1 0.3 0.023 14.7 0.3 1.7 1 1 0 1 1 1 1 Zinc dependent phospholipase C PHP_C PF13263.6 gi|385802616|ref|YP_005839016.1| - 1e-13 50.8 0.0 2.2e-13 49.7 0.0 1.6 1 0 0 1 1 1 1 PHP-associated Spt5-NGN PF03439.13 gi|385802617|ref|YP_005839017.1| - 2.1e-23 82.0 0.0 3.5e-23 81.3 0.0 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|385802617|ref|YP_005839017.1| - 8.1e-08 32.0 2.4 8.2e-08 31.9 0.2 2.2 3 0 0 3 3 3 1 KOW motif NusG PF02357.19 gi|385802617|ref|YP_005839017.1| - 0.016 15.7 0.0 0.047 14.2 0.0 1.8 1 1 0 1 1 1 0 Transcription termination factor nusG Glyco_hydro_65C PF03633.15 gi|385802617|ref|YP_005839017.1| - 0.059 13.3 0.5 0.097 12.6 0.5 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, C-terminal domain SecE PF00584.20 gi|385802618|ref|YP_005839018.1| - 0.00026 20.9 0.1 0.00033 20.5 0.1 1.2 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex SLC3A2_N PF16028.5 gi|385802618|ref|YP_005839018.1| - 0.074 12.6 0.1 0.1 12.2 0.1 1.2 1 0 0 1 1 1 0 Solute carrier family 3 member 2 N-terminus Tubulin PF00091.25 gi|385802619|ref|YP_005839019.1| - 2.2e-41 142.3 1.0 3.3e-41 141.7 1.0 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|385802619|ref|YP_005839019.1| - 5.3e-35 119.6 2.8 9.7e-35 118.8 1.3 2.4 2 0 0 2 2 2 1 FtsZ family, C-terminal domain NAD_binding_10 PF13460.6 gi|385802619|ref|YP_005839019.1| - 0.0068 16.3 2.0 0.026 14.4 0.1 2.5 3 0 0 3 3 3 1 NAD(P)H-binding Tubulin_2 PF13809.6 gi|385802619|ref|YP_005839019.1| - 0.012 14.8 7.9 0.023 13.9 2.2 2.6 1 1 1 2 2 2 0 Tubulin like EF-hand_1 PF00036.32 gi|385802619|ref|YP_005839019.1| - 0.072 12.7 0.2 4.8 7.0 0.0 2.9 3 0 0 3 3 3 0 EF hand tRNA_deacylase PF04414.12 gi|385802620|ref|YP_005839020.1| - 3.5e-61 206.3 0.0 5.5e-61 205.7 0.0 1.3 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Shikimate_dh_N PF08501.11 gi|385802621|ref|YP_005839021.1| - 2.4e-26 91.8 0.0 5.6e-26 90.6 0.0 1.6 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|385802621|ref|YP_005839021.1| - 3.5e-11 42.7 1.5 7e-11 41.7 1.5 1.6 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|385802621|ref|YP_005839021.1| - 8e-10 38.9 0.4 1.4e-09 38.2 0.1 1.5 2 0 0 2 2 1 1 Shikimate / quinate 5-dehydrogenase FAD_binding_2 PF00890.24 gi|385802621|ref|YP_005839021.1| - 1.1e-05 24.7 2.6 1.5e-05 24.3 2.6 1.2 1 0 0 1 1 1 1 FAD binding domain adh_short PF00106.25 gi|385802621|ref|YP_005839021.1| - 0.0005 19.6 1.4 0.001 18.6 1.4 1.5 1 0 0 1 1 1 1 short chain dehydrogenase Pyr_redox_2 PF07992.14 gi|385802621|ref|YP_005839021.1| - 0.0013 18.0 0.2 0.0019 17.5 0.2 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase IlvN PF07991.12 gi|385802621|ref|YP_005839021.1| - 0.0018 17.9 0.3 0.0061 16.1 0.1 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|385802621|ref|YP_005839021.1| - 0.0019 18.7 0.7 0.0037 17.8 0.7 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent THF_DHG_CYH_C PF02882.19 gi|385802621|ref|YP_005839021.1| - 0.0026 17.1 0.0 0.017 14.4 0.0 2.0 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Sacchrp_dh_NADP PF03435.18 gi|385802621|ref|YP_005839021.1| - 0.0039 17.4 1.8 0.01 16.1 1.1 2.1 2 1 0 2 2 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|385802621|ref|YP_005839021.1| - 0.0048 16.6 0.5 0.0079 15.9 0.5 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Thi4 PF01946.17 gi|385802621|ref|YP_005839021.1| - 0.0061 15.8 0.1 0.0088 15.3 0.1 1.2 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.19 gi|385802621|ref|YP_005839021.1| - 0.012 14.9 1.0 0.018 14.3 1.0 1.2 1 0 0 1 1 1 0 FAD binding domain AlaDh_PNT_C PF01262.21 gi|385802621|ref|YP_005839021.1| - 0.013 14.8 1.6 0.023 14.0 1.6 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 gi|385802621|ref|YP_005839021.1| - 0.018 14.2 6.2 0.025 13.7 6.2 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_binding_7 PF13241.6 gi|385802621|ref|YP_005839021.1| - 0.023 15.2 0.0 0.036 14.5 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|385802621|ref|YP_005839021.1| - 0.031 13.6 0.1 0.048 13.0 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|385802621|ref|YP_005839021.1| - 0.037 13.9 0.5 0.053 13.4 0.5 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.6 gi|385802621|ref|YP_005839021.1| - 0.04 13.2 0.3 0.058 12.6 0.3 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|385802621|ref|YP_005839021.1| - 0.046 13.1 4.9 0.068 12.5 4.9 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase AdoHcyase_NAD PF00670.21 gi|385802621|ref|YP_005839021.1| - 0.057 13.5 0.4 0.098 12.7 0.4 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain HI0933_like PF03486.14 gi|385802621|ref|YP_005839021.1| - 0.098 11.3 1.8 0.13 10.9 1.8 1.2 1 0 0 1 1 1 0 HI0933-like protein NAD_binding_8 PF13450.6 gi|385802621|ref|YP_005839021.1| - 0.49 10.7 5.0 1.3 9.3 4.9 1.8 1 1 0 1 1 1 0 NAD(P)-binding Rossmann-like domain HHH_5 PF14520.6 gi|385802622|ref|YP_005839022.1| - 4.1e-07 30.5 0.1 8.1e-07 29.6 0.1 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|385802622|ref|YP_005839022.1| - 0.00096 19.4 0.1 0.0028 17.9 0.1 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) Cdd1 PF11731.8 gi|385802622|ref|YP_005839022.1| - 0.023 14.9 0.0 0.043 14.1 0.0 1.4 1 0 0 1 1 1 0 Pathogenicity locus Aminotran_4 PF01063.19 gi|385802623|ref|YP_005839023.1| - 8.1e-58 195.9 0.0 9.5e-58 195.7 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV Linker_histone PF00538.19 gi|385802623|ref|YP_005839023.1| - 0.19 12.1 0.0 0.36 11.2 0.0 1.4 1 0 0 1 1 1 0 linker histone H1 and H5 family Rieske PF00355.26 gi|385802624|ref|YP_005839024.1| - 6.1e-09 35.7 0.0 8.4e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Big_9 PF17963.1 gi|385802624|ref|YP_005839024.1| - 0.055 14.2 1.6 5.3 7.8 0.3 2.2 1 1 1 2 2 2 0 Bacterial Ig domain GtrA PF04138.14 gi|385802625|ref|YP_005839025.1| - 2.2e-14 53.7 4.1 3.5e-14 53.0 4.1 1.3 1 1 0 1 1 1 1 GtrA-like protein Glycos_transf_2 PF00535.26 gi|385802626|ref|YP_005839026.1| - 0.00037 20.4 0.0 0.022 14.6 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase family 2 Tegument_dsDNA PF12818.7 gi|385802626|ref|YP_005839026.1| - 0.032 13.4 0.2 0.046 12.9 0.2 1.2 1 0 0 1 1 1 0 dsDNA viral tegument protein TOC159_MAD PF11886.8 gi|385802626|ref|YP_005839026.1| - 0.073 12.0 0.0 0.13 11.2 0.0 1.3 1 0 0 1 1 1 0 Translocase of chloroplast 159/132, membrane anchor domain LAL_C2 PF18603.1 gi|385802626|ref|YP_005839026.1| - 0.097 12.8 0.1 0.83 9.9 0.0 2.3 2 0 0 2 2 2 0 L-amino acid ligase C-terminal domain 2 DUF2298 PF10060.9 gi|385802627|ref|YP_005839027.1| - 8.8e-138 460.1 22.7 1.2e-137 459.7 22.7 1.1 1 0 0 1 1 1 1 Uncharacterized membrane protein (DUF2298) ATP_synth_reg PF14960.6 gi|385802627|ref|YP_005839027.1| - 0.0079 15.7 0.1 0.03 13.8 0.1 2.0 1 0 0 1 1 1 1 ATP synthase regulation Ibs_toxin PF13956.6 gi|385802627|ref|YP_005839027.1| - 0.023 14.7 0.4 0.12 12.4 0.4 2.3 1 0 0 1 1 1 0 Toxin Ibs, type I toxin-antitoxin system COX14 PF14880.6 gi|385802627|ref|YP_005839027.1| - 0.61 10.0 6.3 1.1 9.1 0.6 3.0 3 0 0 3 3 3 0 Cytochrome oxidase c assembly Tad PF13400.6 gi|385802627|ref|YP_005839027.1| - 0.63 10.4 0.1 0.63 10.4 0.1 4.2 5 0 0 5 5 5 0 Putative Flp pilus-assembly TadE/G-like Oleosin PF01277.17 gi|385802627|ref|YP_005839027.1| - 2.9 7.7 10.4 0.49 10.2 4.2 2.9 2 0 0 2 2 2 0 Oleosin Ribosomal_L44 PF00935.19 gi|385802629|ref|YP_005839029.1| - 3.3e-24 85.1 3.9 3.9e-24 84.9 3.9 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 zf-ribbon_3 PF13248.6 gi|385802629|ref|YP_005839029.1| - 0.0053 16.1 0.6 2.7 7.5 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Terminase_GpA PF05876.12 gi|385802629|ref|YP_005839029.1| - 0.013 14.1 0.3 0.017 13.7 0.3 1.1 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) Siva PF05458.12 gi|385802629|ref|YP_005839029.1| - 0.059 13.0 0.1 0.071 12.8 0.1 1.2 1 0 0 1 1 1 0 Cd27 binding protein (Siva) zinc_ribbon_10 PF10058.9 gi|385802629|ref|YP_005839029.1| - 0.063 13.0 0.9 1.3 8.8 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Zn_ribbon_SprT PF17283.2 gi|385802629|ref|YP_005839029.1| - 0.07 13.0 4.1 4.6 7.2 0.8 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|385802629|ref|YP_005839029.1| - 0.071 13.1 1.9 3 7.9 0.2 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|385802629|ref|YP_005839029.1| - 0.075 13.2 1.0 12 6.1 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|385802629|ref|YP_005839029.1| - 0.14 11.9 2.4 5.4 6.9 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.6 gi|385802629|ref|YP_005839029.1| - 0.33 11.1 7.2 0.54 10.4 7.2 1.4 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Ribosomal_S27e PF01667.17 gi|385802630|ref|YP_005839030.1| - 8.2e-20 70.3 0.8 9.5e-20 70.1 0.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 Zn-ribbon_8 PF09723.10 gi|385802630|ref|YP_005839030.1| - 0.024 14.8 0.3 0.049 13.8 0.3 1.5 1 0 0 1 1 1 0 Zinc ribbon domain RPA_interact_C PF14768.6 gi|385802630|ref|YP_005839030.1| - 0.026 15.1 0.1 0.029 14.9 0.1 1.1 1 0 0 1 1 1 0 Replication protein A interacting C-terminal TF_Zn_Ribbon PF08271.12 gi|385802630|ref|YP_005839030.1| - 0.032 13.7 1.0 0.067 12.7 1.0 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding zf-IS66 PF13005.7 gi|385802630|ref|YP_005839030.1| - 0.039 14.4 0.2 7.3 7.1 0.0 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Prok-RING_1 PF14446.6 gi|385802630|ref|YP_005839030.1| - 0.057 13.3 1.3 0.09 12.7 1.3 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Elf1 PF05129.13 gi|385802630|ref|YP_005839030.1| - 0.099 12.7 1.7 0.16 12.1 1.7 1.5 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like RNA_POL_M_15KD PF02150.16 gi|385802630|ref|YP_005839030.1| - 0.16 11.9 2.2 0.45 10.4 2.2 1.7 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit DUF3797 PF12677.7 gi|385802630|ref|YP_005839030.1| - 0.82 9.6 4.9 1 9.3 2.9 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) TFIIS_C PF01096.18 gi|385802630|ref|YP_005839030.1| - 0.95 9.4 3.9 2.4 8.1 0.3 2.2 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) zf-NADH-PPase PF09297.11 gi|385802630|ref|YP_005839030.1| - 1.5 8.6 4.4 4.7 7.0 0.3 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain EIF_2_alpha PF07541.12 gi|385802631|ref|YP_005839031.1| - 1.2e-24 86.6 0.1 2.3e-24 85.7 0.0 1.5 2 0 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|385802631|ref|YP_005839031.1| - 2.7e-14 53.2 2.6 1.8e-13 50.6 0.5 2.3 2 0 0 2 2 2 1 S1 RNA binding domain DUF2073 PF09846.9 gi|385802631|ref|YP_005839031.1| - 0.094 12.6 0.2 0.19 11.6 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2073) CsrA PF02599.16 gi|385802631|ref|YP_005839031.1| - 0.13 12.2 0.1 0.4 10.7 0.0 1.8 2 0 0 2 2 2 0 Global regulator protein family Nop10p PF04135.12 gi|385802632|ref|YP_005839032.1| - 6e-22 77.4 0.3 6.6e-22 77.3 0.3 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family PAC2 PF09754.9 gi|385802633|ref|YP_005839033.1| - 3.3e-49 167.8 0.1 3.8e-49 167.6 0.1 1.0 1 0 0 1 1 1 1 PAC2 family PhzC-PhzF PF02567.16 gi|385802635|ref|YP_005839035.1| - 1.5e-57 195.3 0.0 1.7e-57 195.0 0.0 1.1 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DAP_epimerase PF01678.19 gi|385802635|ref|YP_005839035.1| - 0.00049 20.3 0.1 0.0029 17.8 0.0 2.2 3 0 0 3 3 3 1 Diaminopimelate epimerase Pro_racemase PF05544.11 gi|385802635|ref|YP_005839035.1| - 0.0029 16.7 0.0 0.0038 16.3 0.0 1.2 1 0 0 1 1 1 1 Proline racemase Pribosyltran PF00156.27 gi|385802636|ref|YP_005839036.1| - 5.7e-17 61.7 0.0 8.5e-17 61.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|385802636|ref|YP_005839036.1| - 0.054 12.9 0.0 0.081 12.4 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Mem_trans PF03547.18 gi|385802637|ref|YP_005839037.1| - 1.8e-20 72.7 28.1 2.9e-12 45.7 5.4 2.1 1 1 1 2 2 2 2 Membrane transport protein Tad PF13400.6 gi|385802637|ref|YP_005839037.1| - 0.2 12.0 0.1 0.2 12.0 0.1 5.2 5 2 2 7 7 7 0 Putative Flp pilus-assembly TadE/G-like PNP_UDP_1 PF01048.20 gi|385802638|ref|YP_005839038.1| - 7e-42 143.3 0.2 8.1e-42 143.1 0.2 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Molydop_binding PF01568.21 gi|385802638|ref|YP_005839038.1| - 0.098 12.7 0.0 0.27 11.3 0.0 1.7 2 0 0 2 2 2 0 Molydopterin dinucleotide binding domain SMC_ScpA PF02616.14 gi|385802639|ref|YP_005839039.1| - 2e-12 47.5 0.0 1.2e-06 28.7 0.0 2.3 2 0 0 2 2 2 2 Segregation and condensation protein ScpA DUF1079 PF06435.11 gi|385802639|ref|YP_005839039.1| - 0.72 10.1 2.9 2.9 8.2 0.2 3.0 3 0 0 3 3 3 0 Repeat of unknown function (DUF1079) Rnk_N PF14760.6 gi|385802639|ref|YP_005839039.1| - 3.4 8.2 7.3 3.4 8.2 0.0 3.3 4 0 0 4 4 4 0 Rnk N-terminus SMC_N PF02463.19 gi|385802640|ref|YP_005839040.1| - 1.6e-59 201.0 14.3 3.6e-59 199.9 14.3 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|385802640|ref|YP_005839040.1| - 3.8e-30 104.6 0.0 1.3e-29 102.9 0.0 2.0 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.6 gi|385802640|ref|YP_005839040.1| - 4.4e-15 56.7 4.0 4.4e-15 56.7 4.0 8.0 2 2 2 4 4 1 1 AAA domain AAA_21 PF13304.6 gi|385802640|ref|YP_005839040.1| - 1.5e-12 48.0 3.4 5.6e-08 32.9 1.2 4.4 4 2 0 5 5 4 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF3584 PF12128.8 gi|385802640|ref|YP_005839040.1| - 1e-09 36.6 106.1 1.3e-05 23.0 9.8 4.3 2 1 2 4 4 4 4 Protein of unknown function (DUF3584) AAA_15 PF13175.6 gi|385802640|ref|YP_005839040.1| - 2.2e-07 31.0 53.1 0.00067 19.5 7.5 4.8 2 2 1 3 3 3 2 AAA ATPase domain DUF1664 PF07889.12 gi|385802640|ref|YP_005839040.1| - 3.3e-07 30.4 69.8 0.0003 20.8 3.6 9.3 3 2 6 9 9 9 4 Protein of unknown function (DUF1664) APG6_N PF17675.1 gi|385802640|ref|YP_005839040.1| - 1e-06 29.3 143.2 0.11 13.1 23.6 8.8 2 2 6 8 8 8 3 Apg6 coiled-coil region Seryl_tRNA_N PF02403.22 gi|385802640|ref|YP_005839040.1| - 2.6e-06 27.6 102.4 0.008 16.4 12.7 9.7 3 2 7 11 11 11 6 Seryl-tRNA synthetase N-terminal domain TPR_MLP1_2 PF07926.12 gi|385802640|ref|YP_005839040.1| - 3.3e-06 27.2 120.9 0.00072 19.6 16.3 8.1 2 2 5 7 7 6 4 TPR/MLP1/MLP2-like protein Filament PF00038.21 gi|385802640|ref|YP_005839040.1| - 9.7e-06 25.4 108.6 0.00036 20.2 39.6 6.5 2 2 3 5 5 4 2 Intermediate filament protein DUF4201 PF13870.6 gi|385802640|ref|YP_005839040.1| - 1.5e-05 24.8 71.2 0.003 17.3 1.3 7.5 2 2 3 6 6 5 4 Domain of unknown function (DUF4201) Spc7 PF08317.11 gi|385802640|ref|YP_005839040.1| - 2e-05 23.6 117.6 0.018 13.9 19.5 7.5 2 2 5 7 7 7 5 Spc7 kinetochore protein AAA_29 PF13555.6 gi|385802640|ref|YP_005839040.1| - 4e-05 23.3 0.0 0.00011 21.8 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|385802640|ref|YP_005839040.1| - 5.7e-05 22.0 95.4 0.00014 20.7 23.5 5.6 3 2 2 6 6 6 3 AAA domain EzrA PF06160.12 gi|385802640|ref|YP_005839040.1| - 9.6e-05 20.7 95.5 0.013 13.8 44.6 3.3 2 1 0 2 2 2 2 Septation ring formation regulator, EzrA DUF724 PF05266.14 gi|385802640|ref|YP_005839040.1| - 0.00011 22.1 97.3 0.018 14.9 9.6 8.3 2 2 7 9 9 8 6 Protein of unknown function (DUF724) Laminin_II PF06009.12 gi|385802640|ref|YP_005839040.1| - 0.00011 22.2 78.4 0.27 11.2 8.0 8.5 5 2 3 9 9 7 4 Laminin Domain II Fez1 PF06818.15 gi|385802640|ref|YP_005839040.1| - 0.00034 21.1 102.1 0.16 12.4 14.5 6.1 2 2 3 5 5 5 1 Fez1 GAS PF13851.6 gi|385802640|ref|YP_005839040.1| - 0.00043 19.7 91.2 0.01 15.2 0.7 7.0 2 2 4 7 7 6 5 Growth-arrest specific micro-tubule binding Leu_zip PF15294.6 gi|385802640|ref|YP_005839040.1| - 0.0009 18.8 10.3 0.0009 18.8 10.3 6.4 2 2 4 6 6 6 1 Leucine zipper CENP-F_leu_zip PF10473.9 gi|385802640|ref|YP_005839040.1| - 0.0012 18.9 115.7 0.029 14.4 19.9 8.9 2 2 7 9 9 8 7 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ATG16 PF08614.11 gi|385802640|ref|YP_005839040.1| - 0.0016 18.7 125.4 0.002 18.4 23.1 7.1 3 2 4 7 7 6 3 Autophagy protein 16 (ATG16) MscS_porin PF12795.7 gi|385802640|ref|YP_005839040.1| - 0.0022 17.6 112.2 0.0024 17.4 19.0 5.9 2 2 3 5 5 5 2 Mechanosensitive ion channel porin domain Atg14 PF10186.9 gi|385802640|ref|YP_005839040.1| - 0.0025 17.0 21.7 0.0025 17.0 21.7 5.9 2 2 3 5 5 5 2 Vacuolar sorting 38 and autophagy-related subunit 14 IFT57 PF10498.9 gi|385802640|ref|YP_005839040.1| - 0.0037 16.3 89.3 0.43 9.5 12.9 5.6 2 2 3 5 5 5 4 Intra-flagellar transport protein 57 Rx_N PF18052.1 gi|385802640|ref|YP_005839040.1| - 0.0037 17.5 2.4 0.0037 17.5 2.4 7.8 3 2 2 7 7 6 2 Rx N-terminal domain DUF4407 PF14362.6 gi|385802640|ref|YP_005839040.1| - 0.0092 15.4 101.9 0.0071 15.7 5.4 7.1 2 2 4 6 6 6 3 Domain of unknown function (DUF4407) Baculo_PEP_C PF04513.12 gi|385802640|ref|YP_005839040.1| - 0.011 15.8 49.9 0.16 12.0 2.7 7.3 3 2 3 7 7 7 0 Baculovirus polyhedron envelope protein, PEP, C terminus Fib_alpha PF08702.10 gi|385802640|ref|YP_005839040.1| - 0.012 15.8 7.1 0.012 15.8 7.1 7.9 3 2 4 8 8 8 0 Fibrinogen alpha/beta chain family UPF0242 PF06785.11 gi|385802640|ref|YP_005839040.1| - 0.016 15.3 110.4 0.02 15.0 23.3 7.0 2 2 4 6 6 6 0 Uncharacterised protein family (UPF0242) N-terminus Syntaxin-6_N PF09177.11 gi|385802640|ref|YP_005839040.1| - 0.056 14.0 85.9 0.037 14.6 8.9 9.0 2 2 3 5 5 3 0 Syntaxin 6, N-terminal FPP PF05911.11 gi|385802640|ref|YP_005839040.1| - 0.15 10.3 90.9 0.11 10.6 30.7 4.7 2 2 3 5 5 5 0 Filament-like plant protein, long coiled-coil DASH_Hsk3 PF08227.11 gi|385802640|ref|YP_005839040.1| - 0.28 11.6 1.5 6.4 7.2 0.1 4.1 3 0 0 3 3 2 0 DASH complex subunit Hsk3 like AAA_22 PF13401.6 gi|385802640|ref|YP_005839040.1| - 1.1 9.5 7.8 12 6.1 0.0 4.8 4 1 1 5 5 4 0 AAA domain DUF3450 PF11932.8 gi|385802640|ref|YP_005839040.1| - 1.8 7.8 102.5 0.21 10.9 5.0 8.9 3 2 7 10 10 10 0 Protein of unknown function (DUF3450) Ssu72 PF04722.13 gi|385802640|ref|YP_005839040.1| - 3.2 7.3 7.4 0.6 9.6 1.9 2.6 2 0 0 2 2 2 0 Ssu72-like protein MAD PF05557.13 gi|385802640|ref|YP_005839040.1| - 3.2 6.0 107.2 0.011 14.1 21.6 4.5 2 2 2 5 5 5 0 Mitotic checkpoint protein DUF812 PF05667.11 gi|385802640|ref|YP_005839040.1| - 3.2 6.5 102.8 0.012 14.5 17.2 5.4 2 2 3 5 5 5 0 Protein of unknown function (DUF812) FliJ PF02050.16 gi|385802640|ref|YP_005839040.1| - 3.5 7.9 83.5 0.32 11.2 11.8 9.1 3 3 6 9 9 8 0 Flagellar FliJ protein ADIP PF11559.8 gi|385802640|ref|YP_005839040.1| - 3.7 7.6 99.7 0.18 11.9 1.6 9.1 3 3 8 11 11 11 0 Afadin- and alpha -actinin-Binding SKA1 PF07160.12 gi|385802641|ref|YP_005839041.1| - 0.014 15.3 3.2 0.015 15.1 3.2 1.0 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 1 FlaC_arch PF05377.11 gi|385802641|ref|YP_005839041.1| - 0.031 14.7 2.2 0.051 14.0 2.2 1.3 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) CENP-Q PF13094.6 gi|385802641|ref|YP_005839041.1| - 0.037 14.2 6.9 0.041 14.1 6.9 1.1 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF3138 PF11336.8 gi|385802641|ref|YP_005839041.1| - 0.038 12.6 1.8 0.04 12.5 1.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) SOAR PF16533.5 gi|385802641|ref|YP_005839041.1| - 0.064 13.2 0.3 0.064 13.2 0.3 1.8 2 0 0 2 2 2 0 STIM1 Orai1-activating region SlyX PF04102.12 gi|385802641|ref|YP_005839041.1| - 0.19 12.4 5.1 0.35 11.5 5.1 1.8 1 1 0 1 1 1 0 SlyX V_ATPase_I PF01496.19 gi|385802641|ref|YP_005839041.1| - 0.2 9.6 3.6 0.24 9.3 3.6 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family ALMT PF11744.8 gi|385802641|ref|YP_005839041.1| - 0.22 10.3 5.0 0.24 10.2 5.0 1.0 1 0 0 1 1 1 0 Aluminium activated malate transporter AATF-Che1 PF13339.6 gi|385802641|ref|YP_005839041.1| - 0.43 11.3 4.8 0.5 11.0 4.8 1.1 1 0 0 1 1 1 0 Apoptosis antagonizing transcription factor CCDC53 PF10152.9 gi|385802641|ref|YP_005839041.1| - 0.64 10.4 5.6 0.87 10.0 5.6 1.2 1 0 0 1 1 1 0 Subunit CCDC53 of WASH complex DUF4407 PF14362.6 gi|385802641|ref|YP_005839041.1| - 0.87 8.9 6.6 1 8.7 6.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Fmp27_WPPW PF10359.9 gi|385802641|ref|YP_005839041.1| - 0.99 8.2 7.2 1.1 8.0 7.2 1.0 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Swi5 PF07061.11 gi|385802641|ref|YP_005839041.1| - 1 9.5 5.0 0.21 11.7 0.6 1.9 2 0 0 2 2 2 0 Swi5 RP-C_C PF11800.8 gi|385802641|ref|YP_005839041.1| - 1.6 8.7 6.7 2.4 8.2 6.7 1.2 1 0 0 1 1 1 0 Replication protein C C-terminal region AF-4 PF05110.13 gi|385802641|ref|YP_005839041.1| - 1.9 6.5 14.0 2 6.4 14.0 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein Cwf_Cwc_15 PF04889.12 gi|385802641|ref|YP_005839041.1| - 2.1 8.0 12.6 2.6 7.7 12.6 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein ABC_tran_CTD PF16326.5 gi|385802641|ref|YP_005839041.1| - 7.5 6.9 8.4 0.34 11.2 2.5 1.8 2 0 0 2 2 2 0 ABC transporter C-terminal domain GatB_N PF02934.15 gi|385802642|ref|YP_005839042.1| - 9.4e-102 340.1 0.0 1.5e-101 339.4 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|385802642|ref|YP_005839042.1| - 6.5e-38 129.9 0.0 1.1e-37 129.2 0.0 1.3 1 0 0 1 1 1 1 GatB domain DUF3018 PF11455.8 gi|385802642|ref|YP_005839042.1| - 0.073 13.0 1.1 0.14 12.1 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3018) Topoisom_bac PF01131.20 gi|385802643|ref|YP_005839043.1| - 4.1e-118 395.0 0.0 5.5e-118 394.5 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.19 gi|385802643|ref|YP_005839043.1| - 2.1e-21 75.4 10.7 4.7e-13 48.7 0.4 3.0 3 0 0 3 3 3 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.22 gi|385802643|ref|YP_005839043.1| - 8.5e-19 67.7 0.0 2.2e-18 66.4 0.0 1.8 1 0 0 1 1 1 1 Toprim domain HHH_5 PF14520.6 gi|385802643|ref|YP_005839043.1| - 2.1e-08 34.7 0.5 7e-08 33.0 0.1 2.3 2 0 0 2 2 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|385802643|ref|YP_005839043.1| - 0.00016 21.5 0.0 0.00053 19.8 0.0 2.0 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda DUF4332 PF14229.6 gi|385802643|ref|YP_005839043.1| - 0.0021 18.3 0.0 0.0062 16.8 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) Cdd1 PF11731.8 gi|385802643|ref|YP_005839043.1| - 0.0092 16.2 0.0 0.044 14.0 0.0 2.1 2 0 0 2 2 2 1 Pathogenicity locus IMS_HHH PF11798.8 gi|385802643|ref|YP_005839043.1| - 0.018 15.3 0.0 0.084 13.2 0.0 2.1 2 0 0 2 2 2 0 IMS family HHH motif HHH PF00633.23 gi|385802643|ref|YP_005839043.1| - 0.075 12.9 0.0 0.21 11.5 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif HEXIM PF15313.6 gi|385802643|ref|YP_005839043.1| - 0.084 13.1 0.0 0.22 11.7 0.0 1.7 1 0 0 1 1 1 0 Hexamethylene bis-acetamide-inducible protein Toprim_4 PF13662.6 gi|385802643|ref|YP_005839043.1| - 0.084 13.4 0.0 0.27 11.7 0.0 1.9 1 0 0 1 1 1 0 Toprim domain SMP_2 PF10144.9 gi|385802643|ref|YP_005839043.1| - 0.18 11.4 0.1 2.1 8.0 0.0 2.1 2 0 0 2 2 2 0 Bacterial virulence factor haemolysin CSD PF00313.22 gi|385802644|ref|YP_005839044.1| - 4.2e-20 71.4 0.1 4.6e-20 71.2 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.6 gi|385802644|ref|YP_005839044.1| - 0.0047 16.8 0.2 0.0067 16.3 0.2 1.3 1 1 0 1 1 1 1 S1-like Rho_RNA_bind PF07497.12 gi|385802644|ref|YP_005839044.1| - 0.021 14.7 0.0 0.026 14.4 0.0 1.1 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain OB_RNB PF08206.11 gi|385802644|ref|YP_005839044.1| - 0.033 13.9 2.6 0.049 13.3 2.6 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain PcrB PF01884.17 gi|385802645|ref|YP_005839045.1| - 9.7e-55 185.5 0.2 1.1e-54 185.3 0.2 1.0 1 0 0 1 1 1 1 PcrB family tRNA-synt_2 PF00152.20 gi|385802646|ref|YP_005839046.1| - 1e-86 290.9 0.0 1.2e-86 290.6 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|385802646|ref|YP_005839046.1| - 8e-13 48.2 0.1 1.3e-12 47.5 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|385802646|ref|YP_005839046.1| - 0.0064 16.0 0.3 0.075 12.5 0.1 2.5 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) GHMP_kinases_N PF00288.26 gi|385802647|ref|YP_005839047.1| - 0.0016 18.6 3.7 0.0016 18.6 3.7 2.0 2 1 1 3 3 3 1 GHMP kinases N terminal domain PPS_PS PF02006.16 gi|385802648|ref|YP_005839048.1| - 3.7e-72 241.6 3.7 4.7e-72 241.2 3.7 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase Trypan_PARP PF05887.11 gi|385802648|ref|YP_005839048.1| - 2.4 8.1 6.6 4.5 7.3 6.6 1.4 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) DDE_Tnp_1 PF01609.21 gi|385802649|ref|YP_005839049.1| - 0.071 12.7 0.0 0.13 11.9 0.0 1.4 1 1 0 1 1 1 0 Transposase DDE domain GST_N_2 PF13409.6 gi|385802650|ref|YP_005839050.1| - 5e-24 84.4 0.2 3.3e-23 81.8 0.0 2.1 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 gi|385802650|ref|YP_005839050.1| - 2.5e-12 46.6 0.3 4.8e-12 45.7 0.3 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 gi|385802650|ref|YP_005839050.1| - 1.1e-08 35.2 0.1 3.1e-08 33.7 0.1 1.7 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 gi|385802650|ref|YP_005839050.1| - 2.9e-07 30.6 0.1 5.4e-07 29.7 0.1 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.6 gi|385802650|ref|YP_005839050.1| - 1.5e-05 25.3 0.0 0.00027 21.3 0.0 2.5 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_6 PF17171.4 gi|385802650|ref|YP_005839050.1| - 5.1e-05 23.0 0.2 8.6e-05 22.3 0.2 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain DUF5444 PF17519.2 gi|385802650|ref|YP_005839050.1| - 0.045 13.8 0.1 0.38 10.8 0.1 2.4 2 0 0 2 2 2 0 Family of unknown function (DUF5444) Thi4 PF01946.17 gi|385802651|ref|YP_005839051.1| - 4.6e-58 196.2 0.7 5.1e-46 156.8 0.2 2.0 1 1 1 2 2 2 2 Thi4 family FAD_binding_3 PF01494.19 gi|385802651|ref|YP_005839051.1| - 4.7e-10 39.3 0.1 9.1e-10 38.3 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|385802651|ref|YP_005839051.1| - 6.7e-10 39.1 0.1 1.6e-09 37.9 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|385802651|ref|YP_005839051.1| - 1.7e-09 37.7 2.1 6.1e-07 29.4 0.2 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|385802651|ref|YP_005839051.1| - 4.2e-09 36.0 2.3 2.6e-08 33.4 1.1 2.2 1 1 1 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|385802651|ref|YP_005839051.1| - 1.9e-08 34.1 0.1 2.6e-08 33.7 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|385802651|ref|YP_005839051.1| - 9.9e-08 31.5 0.1 1.2e-07 31.2 0.1 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|385802651|ref|YP_005839051.1| - 6.2e-07 28.5 0.1 8.9e-07 28.0 0.1 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox PF00070.27 gi|385802651|ref|YP_005839051.1| - 2.5e-05 24.7 1.8 3.6e-05 24.3 0.6 1.9 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|385802651|ref|YP_005839051.1| - 8e-05 22.7 0.2 0.00017 21.6 0.2 1.5 1 0 0 1 1 1 1 FAD-NAD(P)-binding Trp_halogenase PF04820.14 gi|385802651|ref|YP_005839051.1| - 8.9e-05 21.5 0.8 0.0087 14.9 0.1 2.5 2 1 0 2 2 2 1 Tryptophan halogenase Amino_oxidase PF01593.24 gi|385802651|ref|YP_005839051.1| - 0.00015 21.2 0.0 0.00025 20.5 0.0 1.3 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.6 gi|385802651|ref|YP_005839051.1| - 0.00016 21.0 0.4 0.00031 20.1 0.4 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|385802651|ref|YP_005839051.1| - 0.0011 18.1 0.5 0.0085 15.2 0.1 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_7 PF13241.6 gi|385802651|ref|YP_005839051.1| - 0.0075 16.7 0.0 0.014 15.9 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_N PF02254.18 gi|385802651|ref|YP_005839051.1| - 0.014 15.6 0.5 0.032 14.5 0.2 1.7 2 0 0 2 2 2 0 TrkA-N domain GIDA PF01134.22 gi|385802651|ref|YP_005839051.1| - 0.017 14.2 0.2 0.026 13.6 0.2 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A Shikimate_DH PF01488.20 gi|385802651|ref|YP_005839051.1| - 0.02 15.0 0.0 2.9 7.9 0.0 2.2 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|385802651|ref|YP_005839051.1| - 0.088 12.4 0.1 0.15 11.6 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ThiP_synth PF10120.9 gi|385802652|ref|YP_005839052.1| - 7.2e-54 181.8 0.0 1e-53 181.4 0.0 1.2 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 gi|385802652|ref|YP_005839052.1| - 7.5e-07 29.1 0.0 1.8e-06 27.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4 PF04545.16 gi|385802652|ref|YP_005839052.1| - 1.3e-05 24.6 2.1 0.00068 19.1 0.0 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_31 PF13560.6 gi|385802652|ref|YP_005839052.1| - 1.8e-05 25.0 0.8 9.8e-05 22.6 0.0 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|385802652|ref|YP_005839052.1| - 0.00012 21.9 0.0 0.00029 20.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|385802652|ref|YP_005839052.1| - 0.00025 20.8 0.1 0.0019 17.9 0.0 2.4 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.6 gi|385802652|ref|YP_005839052.1| - 0.00047 19.7 2.7 0.001 18.6 0.0 2.7 3 1 0 3 3 3 1 Winged helix-turn-helix DNA-binding TrbH PF07283.11 gi|385802652|ref|YP_005839052.1| - 0.0027 17.9 0.0 0.0089 16.2 0.0 1.8 2 0 0 2 2 2 1 Conjugal transfer protein TrbH HTH_26 PF13443.6 gi|385802652|ref|YP_005839052.1| - 0.0028 18.1 0.0 0.0057 17.1 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_19 PF12844.7 gi|385802652|ref|YP_005839052.1| - 0.003 17.5 0.0 0.0068 16.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|385802652|ref|YP_005839052.1| - 0.0094 15.8 3.4 0.012 15.5 0.0 2.7 3 0 0 3 3 2 1 MarR family YdaS_antitoxin PF15943.5 gi|385802652|ref|YP_005839052.1| - 0.013 15.3 0.0 0.037 13.9 0.0 1.7 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT P22_Cro PF14549.6 gi|385802652|ref|YP_005839052.1| - 0.016 15.1 0.1 0.042 13.7 0.1 1.7 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro DUF3326 PF11805.8 gi|385802652|ref|YP_005839052.1| - 0.016 14.0 0.1 0.026 13.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3326) Sigma70_r4_2 PF08281.12 gi|385802652|ref|YP_005839052.1| - 0.028 14.1 2.1 0.29 10.8 0.0 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_28 PF13518.6 gi|385802652|ref|YP_005839052.1| - 0.039 14.1 0.3 4.1 7.6 0.0 3.2 3 0 0 3 3 3 0 Helix-turn-helix domain Cro PF09048.10 gi|385802652|ref|YP_005839052.1| - 0.042 13.9 0.0 0.082 12.9 0.0 1.4 1 0 0 1 1 1 0 Cro HTH_5 PF01022.20 gi|385802652|ref|YP_005839052.1| - 0.058 13.3 0.0 0.15 12.0 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_10 PF04967.12 gi|385802652|ref|YP_005839052.1| - 0.061 13.1 0.3 0.34 10.7 0.0 2.3 3 0 0 3 3 3 0 HTH DNA binding domain HTH_38 PF13936.6 gi|385802652|ref|YP_005839052.1| - 0.11 12.3 0.0 0.4 10.5 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|385802652|ref|YP_005839052.1| - 0.17 11.7 0.7 0.45 10.4 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain DCD PF06559.11 gi|385802653|ref|YP_005839053.1| - 4.4e-16 58.6 0.0 4.3e-13 48.8 0.0 2.1 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.19 gi|385802653|ref|YP_005839053.1| - 2.6e-15 56.2 0.0 4e-15 55.7 0.0 1.2 1 0 0 1 1 1 1 dUTPase PTH2 PF01981.16 gi|385802654|ref|YP_005839054.1| - 7.3e-41 139.1 0.0 8e-41 139.0 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 HATPase_c PF02518.26 gi|385802655|ref|YP_005839055.1| - 2e-15 57.2 1.0 3.6e-15 56.5 0.1 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|385802655|ref|YP_005839055.1| - 8.9e-11 41.7 4.6 3.7e-10 39.7 1.0 2.8 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|385802655|ref|YP_005839055.1| - 8.8e-10 38.8 0.0 2.2e-09 37.5 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|385802655|ref|YP_005839055.1| - 4.2e-08 33.2 0.3 1.8e-07 31.1 0.0 2.2 3 0 0 3 3 3 1 PAS fold PAS_8 PF13188.7 gi|385802655|ref|YP_005839055.1| - 0.00023 21.1 0.7 0.0014 18.6 0.0 2.4 2 1 0 2 2 2 1 PAS domain PAS_3 PF08447.12 gi|385802655|ref|YP_005839055.1| - 0.00065 19.9 0.0 0.0018 18.5 0.0 1.9 1 0 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.6 gi|385802655|ref|YP_005839055.1| - 0.00089 19.1 0.0 0.0018 18.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|385802655|ref|YP_005839055.1| - 0.024 14.9 0.1 0.047 13.9 0.1 1.5 1 0 0 1 1 1 0 PAS fold PMC2NT PF08066.12 gi|385802655|ref|YP_005839055.1| - 0.11 13.2 1.7 0.56 10.9 0.6 2.7 2 1 0 2 2 2 0 PMC2NT (NUC016) domain PV-1 PF06637.11 gi|385802655|ref|YP_005839055.1| - 0.12 11.1 0.1 0.17 10.7 0.1 1.1 1 0 0 1 1 1 0 PV-1 protein (PLVAP) DUF615 PF04751.14 gi|385802655|ref|YP_005839055.1| - 0.3 11.1 1.6 0.58 10.1 0.8 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF615) TruD PF01142.18 gi|385802656|ref|YP_005839056.1| - 4.6e-149 496.8 0.0 5.3e-149 496.6 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) DUF2103 PF09876.9 gi|385802657|ref|YP_005839057.1| - 8.5e-40 134.7 0.1 1.4e-39 134.0 0.1 1.4 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) Auto_anti-p27 PF06677.12 gi|385802657|ref|YP_005839057.1| - 0.34 11.1 3.2 0.71 10.1 3.2 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Ribosomal_L37ae PF01780.19 gi|385802658|ref|YP_005839058.1| - 6.8e-21 74.1 0.2 8.1e-21 73.9 0.2 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family DNA_RNApol_7kD PF03604.13 gi|385802659|ref|YP_005839059.1| - 2.1e-10 40.1 5.2 2.5e-10 39.8 5.2 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|385802659|ref|YP_005839059.1| - 0.00012 21.4 0.2 0.0074 15.7 0.0 2.1 2 0 0 2 2 2 1 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|385802659|ref|YP_005839059.1| - 0.00027 20.6 1.3 0.00037 20.1 1.3 1.2 1 0 0 1 1 1 1 A2L zinc ribbon domain HypA PF01155.19 gi|385802659|ref|YP_005839059.1| - 0.0015 18.5 0.3 0.0015 18.5 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_UBZ PF18439.1 gi|385802659|ref|YP_005839059.1| - 0.0016 18.0 1.8 0.22 11.1 0.4 2.1 1 1 1 2 2 2 2 Ubiquitin-Binding Zinc Finger YacG PF03884.14 gi|385802659|ref|YP_005839059.1| - 0.0019 17.9 3.7 0.05 13.3 0.8 1.9 1 1 1 2 2 2 2 DNA gyrase inhibitor YacG Zn_Tnp_IS1595 PF12760.7 gi|385802659|ref|YP_005839059.1| - 0.0046 16.9 4.4 0.11 12.5 0.1 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|385802659|ref|YP_005839059.1| - 0.006 16.9 1.4 0.04 14.3 0.1 2.0 1 1 1 2 2 2 1 Restriction alleviation protein Lar zinc-ribbons_6 PF07191.12 gi|385802659|ref|YP_005839059.1| - 0.012 15.6 0.3 0.014 15.3 0.3 1.2 1 0 0 1 1 1 0 zinc-ribbons DZR PF12773.7 gi|385802659|ref|YP_005839059.1| - 0.03 14.3 0.7 0.058 13.4 0.7 1.5 1 1 0 1 1 1 0 Double zinc ribbon Prok-RING_4 PF14447.6 gi|385802659|ref|YP_005839059.1| - 0.033 14.1 0.5 0.042 13.7 0.5 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 RNHCP PF12647.7 gi|385802659|ref|YP_005839059.1| - 0.034 14.1 0.2 0.034 14.1 0.2 1.1 1 0 0 1 1 1 0 RNHCP domain Anti-TRAP PF15777.5 gi|385802659|ref|YP_005839059.1| - 0.042 13.8 0.1 0.047 13.7 0.1 1.2 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein OrfB_Zn_ribbon PF07282.11 gi|385802659|ref|YP_005839059.1| - 0.046 13.7 0.7 0.059 13.3 0.7 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|385802659|ref|YP_005839059.1| - 0.059 13.5 4.6 0.13 12.4 4.5 1.6 1 1 0 1 1 1 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|385802659|ref|YP_005839059.1| - 0.074 12.6 3.8 0.13 11.8 3.8 1.3 1 1 0 1 1 1 0 TFIIB zinc-binding zf-Sec23_Sec24 PF04810.15 gi|385802659|ref|YP_005839059.1| - 0.75 9.9 0.2 0.75 9.9 0.2 2.1 1 1 0 2 2 2 0 Sec23/Sec24 zinc finger zinc_ribbon_4 PF13717.6 gi|385802659|ref|YP_005839059.1| - 1.3 9.0 6.3 68 3.5 6.3 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Pcc1 PF09341.10 gi|385802660|ref|YP_005839060.1| - 3e-05 24.1 0.2 4.6e-05 23.5 0.2 1.3 1 0 0 1 1 1 1 Transcription factor Pcc1 GLTP PF08718.11 gi|385802660|ref|YP_005839060.1| - 0.12 12.6 0.1 0.17 12.2 0.1 1.3 1 0 0 1 1 1 0 Glycolipid transfer protein (GLTP) Prefoldin_2 PF01920.20 gi|385802661|ref|YP_005839061.1| - 7.3e-23 80.6 18.0 8.2e-23 80.4 18.0 1.0 1 0 0 1 1 1 1 Prefoldin subunit DUF5082 PF16888.5 gi|385802661|ref|YP_005839061.1| - 0.003 17.8 9.4 0.0039 17.5 9.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5082) Prefoldin PF02996.17 gi|385802661|ref|YP_005839061.1| - 0.0034 17.3 13.2 0.16 11.9 13.2 2.3 1 1 0 1 1 1 1 Prefoldin subunit CLZ PF16526.5 gi|385802661|ref|YP_005839061.1| - 0.005 17.2 3.6 0.005 17.2 3.6 2.4 1 1 0 2 2 2 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF4988 PF16378.5 gi|385802661|ref|YP_005839061.1| - 0.0078 15.9 3.6 0.015 14.9 0.5 2.0 2 0 0 2 2 2 1 Domain of unknown function FlaC_arch PF05377.11 gi|385802661|ref|YP_005839061.1| - 0.014 15.8 3.6 0.014 15.8 3.6 2.7 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) BRE1 PF08647.11 gi|385802661|ref|YP_005839061.1| - 0.021 14.9 11.8 0.025 14.6 2.4 2.4 2 1 0 2 2 2 0 BRE1 E3 ubiquitin ligase DUF4407 PF14362.6 gi|385802661|ref|YP_005839061.1| - 0.033 13.5 9.3 0.75 9.1 9.4 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) bZIP_1 PF00170.21 gi|385802661|ref|YP_005839061.1| - 0.035 14.2 1.6 0.035 14.2 1.6 2.3 2 0 0 2 2 2 0 bZIP transcription factor DUF4140 PF13600.6 gi|385802661|ref|YP_005839061.1| - 0.039 14.4 2.3 0.039 14.4 2.3 2.2 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) GIT_CC PF16559.5 gi|385802661|ref|YP_005839061.1| - 0.056 13.3 1.3 0.056 13.3 1.3 2.9 2 1 1 3 3 3 0 GIT coiled-coil Rho guanine nucleotide exchange factor NPV_P10 PF05531.12 gi|385802661|ref|YP_005839061.1| - 0.069 13.6 9.8 0.15 12.5 2.9 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein XhlA PF10779.9 gi|385802661|ref|YP_005839061.1| - 0.087 13.0 1.0 0.087 13.0 1.0 2.7 2 1 0 2 2 2 0 Haemolysin XhlA Sec34 PF04136.15 gi|385802661|ref|YP_005839061.1| - 0.097 12.5 11.4 0.14 12.0 2.0 2.1 1 1 1 2 2 2 0 Sec34-like family DUF4164 PF13747.6 gi|385802661|ref|YP_005839061.1| - 0.11 12.7 14.3 0.21 11.9 1.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) Laminin_I PF06008.14 gi|385802661|ref|YP_005839061.1| - 0.13 12.0 14.9 0.12 12.1 2.4 2.0 1 1 1 2 2 2 0 Laminin Domain I DHR10 PF18595.1 gi|385802661|ref|YP_005839061.1| - 0.15 12.1 21.2 7.4 6.7 21.2 2.2 1 1 0 1 1 1 0 Designed helical repeat protein 10 domain WXG100 PF06013.12 gi|385802661|ref|YP_005839061.1| - 0.16 12.2 11.5 2.9 8.2 2.8 2.7 2 1 0 2 2 2 0 Proteins of 100 residues with WXG FlgN PF05130.12 gi|385802661|ref|YP_005839061.1| - 0.18 12.3 9.4 0.25 11.8 9.4 1.2 1 0 0 1 1 1 0 FlgN protein Sigma70_ner PF04546.13 gi|385802661|ref|YP_005839061.1| - 0.2 11.6 12.4 22 4.9 12.7 2.1 1 1 0 1 1 1 0 Sigma-70, non-essential region Sec8_exocyst PF04048.14 gi|385802661|ref|YP_005839061.1| - 0.3 11.0 6.4 0.1 12.5 1.7 2.0 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain COG2 PF06148.11 gi|385802661|ref|YP_005839061.1| - 0.34 11.0 13.3 0.21 11.7 2.1 2.0 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Proteasom_PSMB PF10508.9 gi|385802661|ref|YP_005839061.1| - 0.35 9.3 4.4 0.42 9.0 4.4 1.1 1 0 0 1 1 1 0 Proteasome non-ATPase 26S subunit DASH_Dam1 PF08653.10 gi|385802661|ref|YP_005839061.1| - 0.36 10.7 5.6 0.75 9.6 0.8 3.0 2 2 0 2 2 2 0 DASH complex subunit Dam1 EzrA PF06160.12 gi|385802661|ref|YP_005839061.1| - 0.36 8.9 13.0 0.59 8.2 13.0 1.3 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA DUF3450 PF11932.8 gi|385802661|ref|YP_005839061.1| - 0.39 10.0 19.4 0.38 10.0 4.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) TPR_MLP1_2 PF07926.12 gi|385802661|ref|YP_005839061.1| - 0.46 10.6 19.4 3.2 7.8 15.9 2.0 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF4200 PF13863.6 gi|385802661|ref|YP_005839061.1| - 0.46 10.9 15.2 2.2 8.7 4.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) DUF948 PF06103.11 gi|385802661|ref|YP_005839061.1| - 0.48 10.7 7.1 4.1 7.7 0.3 2.4 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) HalX PF08663.10 gi|385802661|ref|YP_005839061.1| - 0.5 10.7 18.0 0.18 12.1 6.5 2.3 2 0 0 2 2 2 0 HalX domain Hrs_helical PF12210.8 gi|385802661|ref|YP_005839061.1| - 0.51 10.9 10.4 0.37 11.4 2.3 2.2 2 0 0 2 2 2 0 Hepatocyte growth factor-regulated tyrosine kinase substrate Spc24 PF08286.11 gi|385802661|ref|YP_005839061.1| - 0.54 10.5 16.4 0.18 12.0 2.7 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF1664 PF07889.12 gi|385802661|ref|YP_005839061.1| - 0.64 10.1 9.8 0.62 10.1 2.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) TRCF PF03461.15 gi|385802661|ref|YP_005839061.1| - 0.82 10.1 6.2 2.2 8.7 0.3 2.9 1 1 2 3 3 3 0 TRCF domain TraF_2 PF13729.6 gi|385802661|ref|YP_005839061.1| - 0.82 9.0 9.4 0.1 11.9 0.9 2.0 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein ZapB PF06005.12 gi|385802661|ref|YP_005839061.1| - 0.9 10.0 14.8 0.3 11.6 2.9 2.3 2 0 0 2 2 2 0 Cell division protein ZapB RasGAP_C PF03836.15 gi|385802661|ref|YP_005839061.1| - 0.94 9.6 10.1 3.2 7.9 1.5 2.1 1 1 0 2 2 2 0 RasGAP C-terminus DUF724 PF05266.14 gi|385802661|ref|YP_005839061.1| - 1.1 9.1 10.6 1.5 8.6 10.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF724) PP-binding_2 PF14573.6 gi|385802661|ref|YP_005839061.1| - 1.2 9.4 5.2 13 6.1 0.2 2.3 2 0 0 2 2 2 0 Acyl-carrier PspA_IM30 PF04012.12 gi|385802661|ref|YP_005839061.1| - 1.2 8.6 17.7 6.7 6.2 8.6 1.9 1 1 0 1 1 1 0 PspA/IM30 family DASH_Dad2 PF08654.10 gi|385802661|ref|YP_005839061.1| - 1.4 9.4 11.2 3.6 8.1 1.4 2.4 2 1 0 2 2 2 0 DASH complex subunit Dad2 RPW8 PF05659.11 gi|385802661|ref|YP_005839061.1| - 1.5 8.5 5.5 1.3 8.7 0.7 2.1 1 1 1 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Jnk-SapK_ap_N PF09744.9 gi|385802661|ref|YP_005839061.1| - 1.5 9.0 19.4 13 6.0 19.4 1.9 1 1 0 1 1 1 0 JNK_SAPK-associated protein-1 DinB_2 PF12867.7 gi|385802661|ref|YP_005839061.1| - 1.7 9.1 5.1 19 5.7 1.1 2.1 1 1 1 2 2 2 0 DinB superfamily Lectin_N PF03954.14 gi|385802661|ref|YP_005839061.1| - 2 8.2 8.9 0.83 9.4 0.8 2.1 1 1 0 2 2 2 0 Hepatic lectin, N-terminal domain Nup54 PF13874.6 gi|385802661|ref|YP_005839061.1| - 2.4 8.2 10.1 15 5.7 10.1 2.0 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Hemerythrin PF01814.23 gi|385802661|ref|YP_005839061.1| - 2.5 8.7 9.0 4.8 7.8 9.0 1.4 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain SseC PF04888.12 gi|385802661|ref|YP_005839061.1| - 2.5 7.6 8.3 0.72 9.4 0.5 2.2 2 0 0 2 2 2 0 Secretion system effector C (SseC) like family DUF4757 PF15949.5 gi|385802661|ref|YP_005839061.1| - 2.5 8.5 9.3 6.4 7.2 9.4 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4757) Baculo_PEP_C PF04513.12 gi|385802661|ref|YP_005839061.1| - 2.7 8.0 8.2 10 6.2 8.2 1.8 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Com_YlbF PF06133.11 gi|385802661|ref|YP_005839061.1| - 3 8.5 18.7 0.28 11.8 7.7 2.2 1 1 1 2 2 2 0 Control of competence regulator ComK, YlbF/YmcA ERM PF00769.19 gi|385802661|ref|YP_005839061.1| - 3.2 7.5 19.6 9.5 5.9 19.6 1.6 1 1 0 1 1 1 0 Ezrin/radixin/moesin family Snapin_Pallidin PF14712.6 gi|385802661|ref|YP_005839061.1| - 3.3 8.2 14.0 0.9 10.0 3.2 2.2 2 0 0 2 2 2 0 Snapin/Pallidin Spc7 PF08317.11 gi|385802661|ref|YP_005839061.1| - 3.3 6.5 17.8 7.9 5.3 17.8 1.4 1 1 0 1 1 1 0 Spc7 kinetochore protein Tektin PF03148.14 gi|385802661|ref|YP_005839061.1| - 3.7 6.2 15.9 36 3.0 15.9 1.9 1 1 0 1 1 1 0 Tektin family FUSC PF04632.12 gi|385802661|ref|YP_005839061.1| - 4 5.8 4.3 5.7 5.3 4.3 1.3 1 0 0 1 1 1 0 Fusaric acid resistance protein family Seryl_tRNA_N PF02403.22 gi|385802661|ref|YP_005839061.1| - 4.3 7.6 13.5 3 8.1 1.2 2.2 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain CorA PF01544.18 gi|385802661|ref|YP_005839061.1| - 4.3 6.6 10.3 14 4.9 10.3 1.7 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein JIP_LZII PF16471.5 gi|385802661|ref|YP_005839061.1| - 7.1 6.9 13.9 1.3 9.2 5.0 2.6 1 1 0 2 2 2 0 JNK-interacting protein leucine zipper II Occludin_ELL PF07303.13 gi|385802661|ref|YP_005839061.1| - 7.4 7.4 9.0 6.2 7.6 1.3 2.1 1 1 1 2 2 2 0 Occludin homology domain DUF16 PF01519.16 gi|385802661|ref|YP_005839061.1| - 7.7 7.1 12.9 71 4.0 12.9 2.0 1 1 0 1 1 1 0 Protein of unknown function DUF16 CENP-H PF05837.12 gi|385802661|ref|YP_005839061.1| - 8 6.9 11.9 29 5.1 11.9 1.8 1 1 0 1 1 1 0 Centromere protein H (CENP-H) LMBR1 PF04791.16 gi|385802661|ref|YP_005839061.1| - 8.9 5.1 4.7 11 4.7 4.7 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein APG6_N PF17675.1 gi|385802661|ref|YP_005839061.1| - 9.2 6.8 25.6 7.7 7.0 9.1 2.2 1 1 1 2 2 2 0 Apg6 coiled-coil region GAS PF13851.6 gi|385802661|ref|YP_005839061.1| - 9.4 5.5 19.1 2.5 7.4 4.6 2.0 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding Fib_alpha PF08702.10 gi|385802661|ref|YP_005839061.1| - 9.8 6.4 9.6 32 4.7 9.7 1.7 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF3194 PF11419.8 gi|385802662|ref|YP_005839062.1| - 7.1e-05 23.1 1.3 9.4e-05 22.7 1.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) DUF2070 PF09843.9 gi|385802663|ref|YP_005839063.1| - 6.7e-204 678.3 4.8 7.6e-204 678.2 4.8 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) GATase PF00117.28 gi|385802664|ref|YP_005839064.1| - 1.1e-36 126.4 0.0 1.3e-36 126.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|385802664|ref|YP_005839064.1| - 8.6e-17 61.6 2.2 1.3e-12 47.9 0.5 3.0 1 1 1 2 2 2 2 Peptidase C26 Peptidase_S51 PF03575.17 gi|385802664|ref|YP_005839064.1| - 0.0037 16.9 0.0 0.0058 16.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 GATase_3 PF07685.14 gi|385802664|ref|YP_005839064.1| - 0.036 13.6 0.4 0.12 12.0 0.4 1.9 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain MFMR_assoc PF16596.5 gi|385802665|ref|YP_005839065.1| - 0.098 13.1 0.5 0.098 13.1 0.5 1.9 2 0 0 2 2 2 0 Disordered region downstream of MFMR DUF192 PF02643.15 gi|385802666|ref|YP_005839066.1| - 6.2e-18 64.7 0.0 7.3e-18 64.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 HMGL-like PF00682.19 gi|385802667|ref|YP_005839067.1| - 7.5e-63 212.5 1.6 7.5e-63 212.5 1.6 1.7 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.10 gi|385802667|ref|YP_005839067.1| - 4.8e-30 104.2 1.0 1.1e-29 103.0 1.0 1.6 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain AP_endonuc_2 PF01261.24 gi|385802667|ref|YP_005839067.1| - 0.041 13.3 0.6 0.094 12.1 0.1 1.8 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel VWA_N2 PF16164.5 gi|385802667|ref|YP_005839067.1| - 0.16 12.1 0.0 0.39 10.9 0.0 1.6 1 0 0 1 1 1 0 VWA N-terminal ABC_tran PF00005.27 gi|385802670|ref|YP_005839070.1| - 1.9e-29 103.0 0.0 6.4e-29 101.2 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|385802670|ref|YP_005839070.1| - 1.6e-11 44.6 4.3 1.4e-06 28.4 0.1 2.8 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|385802670|ref|YP_005839070.1| - 0.00062 20.2 0.1 0.0016 18.9 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|385802670|ref|YP_005839070.1| - 0.0021 18.6 0.1 0.0054 17.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|385802670|ref|YP_005839070.1| - 0.0054 16.4 0.2 0.011 15.5 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|385802670|ref|YP_005839070.1| - 0.0073 16.2 0.3 0.023 14.6 0.1 2.0 2 0 0 2 2 2 1 RsgA GTPase SMC_N PF02463.19 gi|385802670|ref|YP_005839070.1| - 0.0092 15.4 0.1 0.039 13.4 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|385802670|ref|YP_005839070.1| - 0.02 15.2 0.1 0.094 13.0 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|385802670|ref|YP_005839070.1| - 0.024 15.1 0.0 0.083 13.3 0.0 2.0 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|385802670|ref|YP_005839070.1| - 0.064 13.3 0.0 0.22 11.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain NLBH PF05211.12 gi|385802670|ref|YP_005839070.1| - 0.081 12.5 1.0 0.13 11.9 1.0 1.2 1 0 0 1 1 1 0 Neuraminyllactose-binding hemagglutinin precursor (NLBH) TsaE PF02367.17 gi|385802670|ref|YP_005839070.1| - 0.091 12.8 0.4 0.25 11.4 0.1 1.8 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MukB PF04310.12 gi|385802670|ref|YP_005839070.1| - 0.093 12.5 0.1 0.2 11.4 0.1 1.5 1 0 0 1 1 1 0 MukB N-terminal AAA_33 PF13671.6 gi|385802670|ref|YP_005839070.1| - 0.11 12.7 0.0 0.23 11.6 0.0 1.7 2 0 0 2 2 1 0 AAA domain cobW PF02492.19 gi|385802670|ref|YP_005839070.1| - 0.12 12.0 1.3 0.15 11.7 0.2 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Roc PF08477.13 gi|385802670|ref|YP_005839070.1| - 0.15 12.3 0.0 0.35 11.1 0.0 1.6 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase FAD_binding_7 PF03441.14 gi|385802673|ref|YP_005839073.1| - 5.1e-67 225.3 0.1 7.1e-67 224.8 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|385802673|ref|YP_005839073.1| - 2.1e-35 122.1 0.1 3.4e-35 121.5 0.1 1.3 1 0 0 1 1 1 1 DNA photolyase Usp PF00582.26 gi|385802673|ref|YP_005839073.1| - 0.092 13.3 0.1 0.19 12.3 0.1 1.5 1 0 0 1 1 1 0 Universal stress protein family F420_oxidored PF03807.17 gi|385802674|ref|YP_005839074.1| - 3e-19 69.4 0.0 4.9e-19 68.7 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent PDH PF02153.17 gi|385802674|ref|YP_005839074.1| - 0.025 13.6 0.1 0.037 13.0 0.1 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase KR PF08659.10 gi|385802674|ref|YP_005839074.1| - 0.042 13.7 0.1 0.1 12.5 0.0 1.6 2 0 0 2 2 2 0 KR domain Semialdhyde_dh PF01118.24 gi|385802674|ref|YP_005839074.1| - 0.11 12.9 0.0 0.15 12.5 0.0 1.3 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|385802674|ref|YP_005839074.1| - 0.11 12.4 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PRA-PH PF01503.17 gi|385802675|ref|YP_005839075.1| - 1.7e-12 47.6 0.3 2e-12 47.4 0.3 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|385802675|ref|YP_005839075.1| - 0.0053 16.9 0.3 0.007 16.5 0.3 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain gp32 PF08804.10 gi|385802675|ref|YP_005839075.1| - 0.067 13.2 0.0 0.094 12.8 0.0 1.3 1 1 0 1 1 1 0 gp32 DNA binding protein like SNO PF01174.19 gi|385802676|ref|YP_005839076.1| - 1.3e-50 171.8 0.0 1.6e-50 171.6 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|385802676|ref|YP_005839076.1| - 5.9e-11 42.3 0.0 9.7e-11 41.6 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|385802676|ref|YP_005839076.1| - 5e-05 23.1 0.0 6.7e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.24 gi|385802676|ref|YP_005839076.1| - 0.00021 21.1 0.4 0.00061 19.6 0.1 1.8 2 0 0 2 2 2 1 DJ-1/PfpI family BPL_N PF09825.9 gi|385802676|ref|YP_005839076.1| - 0.0025 17.0 0.0 0.054 12.6 0.0 2.1 2 0 0 2 2 2 1 Biotin-protein ligase, N terminal GATase PF00117.28 gi|385802676|ref|YP_005839076.1| - 0.0026 17.5 0.0 0.0091 15.8 0.0 1.7 1 1 0 1 1 1 1 Glutamine amidotransferase class-I ThiJ_like PF17124.5 gi|385802676|ref|YP_005839076.1| - 0.078 12.7 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 ThiJ/PfpI family-like Ig_GlcNase PF18368.1 gi|385802676|ref|YP_005839076.1| - 0.079 13.1 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 Exo-beta-D-glucosaminidase Ig-fold domain Sec61_beta PF03911.16 gi|385802677|ref|YP_005839077.1| - 6e-18 64.6 0.1 8.2e-18 64.2 0.1 1.2 1 0 0 1 1 1 1 Sec61beta family DUF4118 PF13493.6 gi|385802677|ref|YP_005839077.1| - 0.015 15.1 0.0 0.018 14.9 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) SnoaL_2 PF12680.7 gi|385802678|ref|YP_005839078.1| - 8.9e-10 39.1 3.3 1e-09 38.9 3.3 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_3 PF13474.6 gi|385802678|ref|YP_005839078.1| - 4.4e-06 27.0 1.3 5.4e-06 26.7 1.3 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|385802678|ref|YP_005839078.1| - 0.00011 22.6 0.6 0.00013 22.3 0.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) LEH PF07858.12 gi|385802678|ref|YP_005839078.1| - 0.0023 18.1 0.3 0.0077 16.3 0.3 1.8 1 1 0 1 1 1 1 Limonene-1,2-epoxide hydrolase catalytic domain HHH_5 PF14520.6 gi|385802679|ref|YP_005839079.1| - 2.8e-05 24.6 0.1 5.3e-05 23.7 0.1 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|385802679|ref|YP_005839079.1| - 0.0021 18.1 1.0 0.0079 16.3 0.1 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif DUF896 PF05979.12 gi|385802679|ref|YP_005839079.1| - 0.014 15.2 0.5 0.031 14.2 0.5 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF896) Bclt PF15318.6 gi|385802679|ref|YP_005839079.1| - 0.023 14.5 0.0 0.033 14.0 0.0 1.2 1 0 0 1 1 1 0 Putative Bcl-2 like protein of testis HHH PF00633.23 gi|385802679|ref|YP_005839079.1| - 0.077 12.9 0.1 0.49 10.4 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix motif ABC_tran PF00005.27 gi|385802681|ref|YP_005839081.1| - 1.1e-32 113.4 0.0 2.4e-32 112.3 0.0 1.5 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|385802681|ref|YP_005839081.1| - 7.7e-18 64.8 0.2 1.7e-17 63.7 0.2 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|385802681|ref|YP_005839081.1| - 8.7e-06 25.8 0.8 0.00071 19.5 0.1 2.2 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385802681|ref|YP_005839081.1| - 0.0049 16.3 0.2 0.025 14.0 0.2 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AIG1 PF04548.16 gi|385802681|ref|YP_005839081.1| - 0.07 12.4 0.4 0.12 11.7 0.4 1.3 1 0 0 1 1 1 0 AIG1 family AAA_22 PF13401.6 gi|385802681|ref|YP_005839081.1| - 0.1 12.9 2.9 1.8 8.8 2.9 2.3 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|385802681|ref|YP_005839081.1| - 0.14 11.9 0.4 0.25 11.1 0.4 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|385802681|ref|YP_005839081.1| - 0.27 11.1 1.0 0.56 10.1 0.1 1.9 2 0 0 2 2 2 0 RsgA GTPase ABC_tran PF00005.27 gi|385802682|ref|YP_005839082.1| - 1.8e-24 86.8 0.0 3e-24 86.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|385802682|ref|YP_005839082.1| - 1.5e-16 60.7 0.0 2.9e-16 59.7 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|385802682|ref|YP_005839082.1| - 4.1e-05 23.6 1.0 0.00014 21.8 0.1 2.0 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|385802682|ref|YP_005839082.1| - 0.00081 19.7 0.5 0.25 11.6 0.5 2.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|385802682|ref|YP_005839082.1| - 0.12 12.2 0.1 0.25 11.1 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|385802682|ref|YP_005839082.1| - 0.18 12.2 0.4 0.44 10.9 0.4 1.9 1 1 0 1 1 1 0 AAA ATPase domain DUF87 PF01935.17 gi|385802682|ref|YP_005839082.1| - 0.77 9.8 2.7 0.54 10.3 0.5 1.8 2 0 0 2 2 2 0 Helicase HerA, central domain BPD_transp_1 PF00528.22 gi|385802683|ref|YP_005839083.1| - 3.6e-29 101.8 16.1 3.6e-29 101.8 16.1 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|385802683|ref|YP_005839083.1| - 1.7e-09 37.5 0.3 1.7e-09 37.5 0.3 2.8 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|385802684|ref|YP_005839084.1| - 3.1e-37 128.1 10.5 3.1e-37 128.1 10.5 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|385802685|ref|YP_005839085.1| - 5.9e-51 173.6 0.2 8.2e-51 173.1 0.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|385802685|ref|YP_005839085.1| - 2.8e-06 26.9 2.1 6.2e-06 25.8 2.1 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence K_channel_TID PF07941.11 gi|385802685|ref|YP_005839085.1| - 1.2 9.7 7.9 2.7 8.5 7.9 1.6 1 0 0 1 1 1 0 Potassium channel Kv1.4 tandem inactivation domain partial_CstF PF15861.5 gi|385802686|ref|YP_005839086.1| - 0.12 12.2 0.1 0.81 9.5 0.0 2.2 3 0 0 3 3 3 0 Partial cleavage stimulation factor domain AA_permease_2 PF13520.6 gi|385802688|ref|YP_005839088.1| - 1.6e-56 191.9 48.1 2.1e-56 191.6 48.1 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|385802688|ref|YP_005839088.1| - 1.9e-46 158.6 43.7 2.4e-46 158.3 43.7 1.1 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|385802688|ref|YP_005839088.1| - 4.1e-10 39.0 10.7 8.6e-10 37.9 10.7 1.4 1 0 0 1 1 1 1 Spore germination protein AA_permease_C PF13906.6 gi|385802688|ref|YP_005839088.1| - 7.4e-06 25.9 5.5 7.4e-06 25.9 5.5 4.1 5 0 0 5 5 5 1 C-terminus of AA_permease EcsB PF05975.12 gi|385802688|ref|YP_005839088.1| - 0.0096 14.8 1.5 0.0096 14.8 1.5 2.7 3 0 0 3 3 3 1 Bacterial ABC transporter protein EcsB DUF1218 PF06749.12 gi|385802688|ref|YP_005839088.1| - 0.13 12.8 0.3 0.13 12.8 0.3 4.6 4 1 0 4 4 4 0 Protein of unknown function (DUF1218) TrkA_C PF02080.21 gi|385802690|ref|YP_005839090.1| - 5.6e-12 45.3 0.0 1.2e-11 44.2 0.0 1.6 1 0 0 1 1 1 1 TrkA-C domain HTH_24 PF13412.6 gi|385802690|ref|YP_005839090.1| - 1.1e-10 40.9 0.0 1.9e-10 40.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|385802690|ref|YP_005839090.1| - 2.9e-08 33.4 0.1 5.3e-08 32.6 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|385802690|ref|YP_005839090.1| - 5.9e-06 26.1 0.0 5.8e-05 22.9 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|385802690|ref|YP_005839090.1| - 6.8e-06 25.9 0.0 1.2e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|385802690|ref|YP_005839090.1| - 2.5e-05 24.2 0.0 6.2e-05 23.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|385802690|ref|YP_005839090.1| - 0.0016 18.1 0.0 0.0042 16.8 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|385802690|ref|YP_005839090.1| - 0.0023 17.9 0.1 0.14 12.2 0.0 2.6 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|385802690|ref|YP_005839090.1| - 0.0029 17.9 0.0 0.0082 16.5 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator HTH_IclR PF09339.10 gi|385802690|ref|YP_005839090.1| - 0.0032 17.2 0.0 0.017 14.9 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|385802690|ref|YP_005839090.1| - 0.0035 17.4 0.0 0.0072 16.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|385802690|ref|YP_005839090.1| - 0.0083 16.0 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|385802690|ref|YP_005839090.1| - 0.022 14.9 0.0 0.039 14.2 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MctB PF11382.8 gi|385802690|ref|YP_005839090.1| - 0.023 14.4 0.1 0.027 14.2 0.1 1.3 1 0 0 1 1 1 0 Copper transport outer membrane protein, MctB HTH_23 PF13384.6 gi|385802690|ref|YP_005839090.1| - 0.072 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain MarR PF01047.22 gi|385802690|ref|YP_005839090.1| - 0.11 12.4 0.0 0.24 11.4 0.0 1.6 1 0 0 1 1 1 0 MarR family 4HBT PF03061.22 gi|385802693|ref|YP_005839093.1| - 1.5e-14 54.1 0.2 2.1e-14 53.6 0.2 1.2 1 0 0 1 1 1 1 Thioesterase superfamily zf-C2H2_4 PF13894.6 gi|385802694|ref|YP_005839094.1| - 0.003 18.2 1.1 0.015 16.1 0.0 2.4 2 0 0 2 2 2 1 C2H2-type zinc finger HypA PF01155.19 gi|385802694|ref|YP_005839094.1| - 0.0033 17.4 0.1 0.005 16.9 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|385802694|ref|YP_005839094.1| - 0.0071 15.7 1.2 0.23 10.9 0.1 2.4 2 0 0 2 2 2 1 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|385802694|ref|YP_005839094.1| - 0.0082 16.2 0.3 0.019 15.1 0.3 1.6 1 0 0 1 1 1 1 Zinc ribbon domain zf-C2H2_6 PF13912.6 gi|385802694|ref|YP_005839094.1| - 0.0093 15.9 1.6 0.01 15.8 0.0 1.8 2 0 0 2 2 2 1 C2H2-type zinc finger zf-C2H2_2 PF12756.7 gi|385802694|ref|YP_005839094.1| - 0.011 16.0 0.3 0.024 15.0 0.3 1.6 1 0 0 1 1 1 0 C2H2 type zinc-finger (2 copies) zf-Di19 PF05605.12 gi|385802694|ref|YP_005839094.1| - 0.023 15.0 0.3 0.038 14.3 0.3 1.4 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-C2H2 PF00096.26 gi|385802694|ref|YP_005839094.1| - 0.026 15.0 0.9 0.18 12.3 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zinc_ribbon_9 PF14369.6 gi|385802694|ref|YP_005839094.1| - 0.088 13.1 1.4 14 6.1 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon Prim_Zn_Ribbon PF08273.12 gi|385802694|ref|YP_005839094.1| - 0.16 12.3 1.9 1.2 9.5 0.2 2.3 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase NOB1_Zn_bind PF08772.11 gi|385802694|ref|YP_005839094.1| - 0.16 12.2 0.8 0.47 10.7 0.8 1.9 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DUF4215 PF13948.6 gi|385802694|ref|YP_005839094.1| - 0.73 10.3 4.0 3.9 8.0 0.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4215) Nudix_N_2 PF14803.6 gi|385802694|ref|YP_005839094.1| - 2 8.4 4.3 12 6.0 0.1 3.3 3 1 0 3 3 3 0 Nudix N-terminal DUF3891 PF13030.6 gi|385802695|ref|YP_005839095.1| - 1e-34 120.2 0.0 1.6e-34 119.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3891) Thioredoxin PF00085.20 gi|385802696|ref|YP_005839096.1| - 1.5e-21 76.3 0.0 1.7e-21 76.1 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|385802696|ref|YP_005839096.1| - 6.5e-08 32.8 0.1 0.00051 20.3 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_2 PF13098.6 gi|385802696|ref|YP_005839096.1| - 8.5e-07 29.4 0.3 1.7e-05 25.2 0.3 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Redoxin PF08534.10 gi|385802696|ref|YP_005839096.1| - 4.7e-05 23.1 0.2 0.0014 18.3 0.0 2.0 1 1 1 2 2 2 2 Redoxin Thioredoxin_9 PF14595.6 gi|385802696|ref|YP_005839096.1| - 6.5e-05 22.7 0.1 6.8e-05 22.6 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin Glutaredoxin PF00462.24 gi|385802696|ref|YP_005839096.1| - 0.00028 21.0 0.1 0.00047 20.3 0.1 1.5 1 1 0 1 1 1 1 Glutaredoxin AhpC-TSA PF00578.21 gi|385802696|ref|YP_005839096.1| - 0.00033 20.6 0.1 0.00056 19.8 0.1 1.4 1 1 0 1 1 1 1 AhpC/TSA family Thioredoxin_3 PF13192.6 gi|385802696|ref|YP_005839096.1| - 0.00068 19.6 0.0 0.0007 19.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain TraF PF13728.6 gi|385802696|ref|YP_005839096.1| - 0.00099 19.0 0.0 0.0011 18.9 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_7 PF13899.6 gi|385802696|ref|YP_005839096.1| - 0.02 15.0 0.1 0.07 13.3 0.1 1.9 1 1 0 1 1 1 0 Thioredoxin-like Thioredoxin_5 PF13743.6 gi|385802696|ref|YP_005839096.1| - 0.027 14.2 0.0 0.028 14.1 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin DSBA PF01323.20 gi|385802696|ref|YP_005839096.1| - 0.047 13.5 0.4 1.5 8.6 0.0 1.9 1 1 1 2 2 2 0 DSBA-like thioredoxin domain DUF836 PF05768.14 gi|385802696|ref|YP_005839096.1| - 0.066 13.6 0.1 0.078 13.4 0.1 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) OST3_OST6 PF04756.13 gi|385802696|ref|YP_005839096.1| - 0.098 12.0 0.0 0.098 12.0 0.0 1.1 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family Ribosomal_L40e PF01020.17 gi|385802697|ref|YP_005839097.1| - 7.4e-09 35.4 5.4 8.7e-09 35.1 5.4 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|385802697|ref|YP_005839097.1| - 0.00097 18.8 2.2 0.0013 18.3 2.2 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|385802697|ref|YP_005839097.1| - 0.0012 18.8 1.4 0.0013 18.7 1.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-CHY PF05495.12 gi|385802697|ref|YP_005839097.1| - 0.0063 17.0 1.7 0.0068 16.9 1.7 1.1 1 0 0 1 1 1 1 CHY zinc finger DHHC PF01529.20 gi|385802697|ref|YP_005839097.1| - 0.061 13.4 1.9 0.066 13.3 1.9 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase SelP_N PF04592.14 gi|385802697|ref|YP_005839097.1| - 0.099 12.0 0.8 0.09 12.2 0.8 1.0 1 0 0 1 1 1 0 Selenoprotein P, N terminal region Nitr_red_bet_C PF14711.6 gi|385802697|ref|YP_005839097.1| - 0.14 11.9 0.1 0.14 11.9 0.1 1.1 1 0 0 1 1 1 0 Respiratory nitrate reductase beta C-terminal zf-RanBP PF00641.18 gi|385802697|ref|YP_005839097.1| - 0.24 10.8 4.8 0.69 9.3 4.8 1.8 1 1 0 1 1 1 0 Zn-finger in Ran binding protein and others Laminin_N PF00055.17 gi|385802698|ref|YP_005839098.1| - 0.12 12.0 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Laminin N-terminal (Domain VI) HTH_34 PF13601.6 gi|385802700|ref|YP_005839100.1| - 1.4e-05 25.2 0.0 3.1e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|385802700|ref|YP_005839100.1| - 2e-05 24.3 0.0 5.6e-05 22.9 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|385802700|ref|YP_005839100.1| - 0.0002 20.9 0.0 0.00036 20.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|385802700|ref|YP_005839100.1| - 0.00062 19.6 0.0 0.00097 19.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|385802700|ref|YP_005839100.1| - 0.00069 19.5 0.1 0.0022 17.9 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|385802700|ref|YP_005839100.1| - 0.0026 17.8 0.1 0.017 15.2 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|385802700|ref|YP_005839100.1| - 0.0032 17.3 0.0 0.0071 16.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|385802700|ref|YP_005839100.1| - 0.0063 17.0 0.1 0.016 15.7 0.1 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|385802700|ref|YP_005839100.1| - 0.026 14.7 0.0 0.058 13.6 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Vitellogenin_N PF01347.22 gi|385802700|ref|YP_005839100.1| - 0.092 11.1 0.0 0.11 10.8 0.0 1.1 1 0 0 1 1 1 0 Lipoprotein amino terminal region GAT PF03127.14 gi|385802700|ref|YP_005839100.1| - 0.11 12.8 0.2 18 5.7 0.1 2.3 2 0 0 2 2 2 0 GAT domain HTH_11 PF08279.12 gi|385802700|ref|YP_005839100.1| - 0.12 12.4 0.1 0.27 11.2 0.1 1.6 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.20 gi|385802700|ref|YP_005839100.1| - 0.15 12.5 0.0 0.3 11.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|385802700|ref|YP_005839100.1| - 0.15 12.0 0.4 1.9 8.5 0.0 2.5 3 0 0 3 3 2 0 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|385802700|ref|YP_005839100.1| - 0.16 11.9 0.0 0.34 10.8 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB CRISPR_Cas6 PF10040.9 gi|385802701|ref|YP_005839101.1| - 7.5e-15 55.3 0.0 1.2e-14 54.7 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 GHL10 PF02638.15 gi|385802701|ref|YP_005839101.1| - 0.17 10.9 0.0 0.26 10.3 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase-like 10 MCM_lid PF17855.1 gi|385802702|ref|YP_005839102.1| - 0.19 12.2 0.4 8.7 6.8 0.2 2.7 2 0 0 2 2 2 0 MCM AAA-lid domain Csc2 PF18320.1 gi|385802703|ref|YP_005839103.1| - 1.7e-37 129.0 0.0 2.1e-37 128.7 0.0 1.1 1 0 0 1 1 1 1 Csc2 Crispr Phage_gp49_66 PF13876.6 gi|385802703|ref|YP_005839103.1| - 0.031 14.6 0.1 0.45 10.9 0.0 2.3 2 0 0 2 2 2 0 Phage protein (N4 Gp49/phage Sf6 gene 66) family DEAD PF00270.29 gi|385802705|ref|YP_005839105.1| - 3.2e-09 36.8 0.0 1e-08 35.1 0.0 1.8 1 1 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|385802705|ref|YP_005839105.1| - 1.1e-05 25.5 0.0 2.5e-05 24.4 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Ead_Ea22 PF13935.6 gi|385802705|ref|YP_005839105.1| - 0.096 13.3 0.2 0.41 11.3 0.0 2.1 2 0 0 2 2 2 0 Ead/Ea22-like protein Cas_Cas4 PF01930.17 gi|385802706|ref|YP_005839106.1| - 2.4e-24 86.3 0.0 2.8e-24 86.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|385802706|ref|YP_005839106.1| - 2.1e-11 44.3 3.1 2.3e-08 34.3 0.0 2.0 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Csa1 PF06023.12 gi|385802706|ref|YP_005839106.1| - 0.062 12.7 0.0 0.078 12.3 0.0 1.3 1 0 0 1 1 1 0 CRISPR-associated exonuclease Csa1 Cas_Cas1 PF01867.16 gi|385802707|ref|YP_005839107.1| - 5.3e-76 255.5 0.0 6.4e-76 255.2 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 CRISPR_Cas2 PF09827.9 gi|385802708|ref|YP_005839108.1| - 6e-20 71.2 0.2 6.9e-20 71.0 0.2 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas2 MaoC_dehydrat_N PF13452.6 gi|385802708|ref|YP_005839108.1| - 0.15 12.2 0.0 0.19 11.9 0.0 1.1 1 0 0 1 1 1 0 N-terminal half of MaoC dehydratase DUF5065 PF16723.5 gi|385802708|ref|YP_005839108.1| - 0.17 12.0 0.2 1.6 8.8 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF5065) Phage_integrase PF00589.22 gi|385802709|ref|YP_005839109.1| - 1.3e-14 54.4 0.2 2.8e-14 53.3 0.2 1.5 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|385802709|ref|YP_005839109.1| - 2e-05 25.0 2.0 3.4e-05 24.2 0.8 2.1 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|385802709|ref|YP_005839109.1| - 6e-05 23.3 1.6 0.00027 21.2 0.6 2.4 2 0 0 2 2 2 1 Phage integrase SAM-like domain Phage_int_SAM_1 PF02899.17 gi|385802709|ref|YP_005839109.1| - 0.00014 22.1 0.6 0.00047 20.4 0.2 2.2 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_2 PF12834.7 gi|385802709|ref|YP_005839109.1| - 0.0018 18.9 0.1 0.68 10.7 0.0 3.4 3 0 0 3 3 3 1 Phage integrase, N-terminal DDE_Tnp_1 PF01609.21 gi|385802711|ref|YP_005839111.1| - 8.4e-13 48.4 0.9 1.3e-12 47.9 0.9 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|385802711|ref|YP_005839111.1| - 0.0016 18.8 0.7 0.0032 17.8 0.2 1.8 2 0 0 2 2 2 1 Transposase DDE domain rve PF00665.26 gi|385802711|ref|YP_005839111.1| - 0.0038 17.4 0.1 0.007 16.6 0.1 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_1_3 PF13612.6 gi|385802711|ref|YP_005839111.1| - 0.0052 16.8 0.0 0.0087 16.1 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|385802711|ref|YP_005839111.1| - 0.024 14.6 0.2 0.083 12.9 0.0 1.9 2 0 0 2 2 2 0 Transposase domain (DUF772) N6_N4_Mtase PF01555.18 gi|385802712|ref|YP_005839112.1| - 3.3e-22 79.3 0.0 9.5e-14 51.7 0.0 2.3 2 0 0 2 2 2 2 DNA methylase UPF0020 PF01170.18 gi|385802712|ref|YP_005839112.1| - 2e-07 30.9 0.0 0.00096 18.9 0.0 2.4 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.15 gi|385802712|ref|YP_005839112.1| - 0.00021 21.1 0.0 0.00058 19.6 0.0 1.7 2 0 0 2 2 1 1 D12 class N6 adenine-specific DNA methyltransferase MTS PF05175.14 gi|385802712|ref|YP_005839112.1| - 0.0014 18.2 0.0 1.1 8.8 0.0 3.7 3 1 0 4 4 4 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|385802712|ref|YP_005839112.1| - 0.0025 18.4 0.0 0.64 10.7 0.0 3.3 3 0 0 3 3 3 1 Methyltransferase domain zinc_ribbon_4 PF13717.6 gi|385802712|ref|YP_005839112.1| - 0.0036 17.2 0.2 0.0036 17.2 0.2 3.2 4 0 0 4 4 3 1 zinc-ribbon domain HypA PF01155.19 gi|385802712|ref|YP_005839112.1| - 0.01 15.9 8.5 0.31 11.1 1.0 2.8 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Cons_hypoth95 PF03602.15 gi|385802712|ref|YP_005839112.1| - 0.014 15.1 0.0 3.7 7.2 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|385802712|ref|YP_005839112.1| - 0.022 15.5 0.0 11 6.8 0.0 3.5 3 0 0 3 3 3 0 Methyltransferase domain zf-FPG_IleRS PF06827.14 gi|385802712|ref|YP_005839112.1| - 0.033 14.0 1.0 0.033 14.0 1.0 2.3 2 1 0 2 2 1 0 Zinc finger found in FPG and IleRS zinc-ribbons_6 PF07191.12 gi|385802712|ref|YP_005839112.1| - 0.046 13.7 7.2 0.56 10.2 1.0 2.4 2 0 0 2 2 2 0 zinc-ribbons Elf1 PF05129.13 gi|385802712|ref|YP_005839112.1| - 0.071 13.2 6.7 0.84 9.7 2.0 3.4 1 1 2 3 3 3 0 Transcription elongation factor Elf1 like DUF2318 PF10080.9 gi|385802712|ref|YP_005839112.1| - 0.14 12.3 2.1 0.47 10.6 0.1 2.2 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) zinc_ribbon_10 PF10058.9 gi|385802712|ref|YP_005839112.1| - 0.31 10.8 4.6 0.45 10.3 0.1 2.5 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein RNHCP PF12647.7 gi|385802712|ref|YP_005839112.1| - 0.63 10.0 3.8 1.2 9.2 3.8 1.4 1 0 0 1 1 1 0 RNHCP domain C1_4 PF07975.12 gi|385802712|ref|YP_005839112.1| - 1 9.7 6.1 5.1 7.4 0.2 2.8 2 1 0 2 2 2 0 TFIIH C1-like domain RNA_POL_M_15KD PF02150.16 gi|385802712|ref|YP_005839112.1| - 1.7 8.6 7.4 6.4 6.7 0.3 3.4 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.10 gi|385802712|ref|YP_005839112.1| - 2.9 8.1 14.0 23 5.2 3.4 3.5 1 1 3 4 4 4 0 Zinc ribbon domain zinc_ribbon_5 PF13719.6 gi|385802712|ref|YP_005839112.1| - 2.9 7.7 6.0 0.91 9.3 1.3 2.7 2 1 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|385802712|ref|YP_005839112.1| - 5.4 6.6 8.6 20 4.8 4.1 3.3 2 1 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.7 gi|385802712|ref|YP_005839112.1| - 6 7.0 11.1 6.7e+02 0.4 11.1 2.5 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|385802712|ref|YP_005839112.1| - 8.9 6.4 17.3 0.15 12.0 0.8 3.3 2 1 1 3 3 3 0 Transposase zinc-ribbon domain N6_Mtase PF02384.16 gi|385802713|ref|YP_005839113.1| - 1.6e-11 44.1 0.0 2.6e-11 43.4 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase Eco57I PF07669.11 gi|385802713|ref|YP_005839113.1| - 4.8e-05 23.8 0.0 9.5e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Eco57I restriction-modification methylase UPF0020 PF01170.18 gi|385802713|ref|YP_005839113.1| - 0.00052 19.8 0.0 0.00094 18.9 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|385802713|ref|YP_005839113.1| - 0.00059 20.5 0.0 0.008 16.9 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|385802713|ref|YP_005839113.1| - 0.0031 17.1 0.0 0.0053 16.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|385802713|ref|YP_005839113.1| - 0.016 16.0 0.0 0.034 14.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain CusF_Ec PF11604.8 gi|385802713|ref|YP_005839113.1| - 0.044 13.8 0.0 0.11 12.5 0.0 1.7 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF AhpC-TSA PF00578.21 gi|385802713|ref|YP_005839113.1| - 0.058 13.3 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 AhpC/TSA family TBP PF00352.21 gi|385802716|ref|YP_005839116.1| - 1.5e-37 127.4 0.0 2.5e-18 65.8 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|385802716|ref|YP_005839116.1| - 0.00023 21.2 0.0 0.16 12.1 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) HEAT_2 PF13646.6 gi|385802719|ref|YP_005839119.1| - 9.5e-22 77.2 15.9 2.7e-13 50.1 2.7 4.4 1 1 3 5 5 5 5 HEAT repeats Adaptin_N PF01602.20 gi|385802719|ref|YP_005839119.1| - 3.5e-17 62.2 0.1 5.8e-07 28.5 0.1 3.0 1 1 2 3 3 3 2 Adaptin N terminal region HEAT PF02985.22 gi|385802719|ref|YP_005839119.1| - 2.4e-14 52.2 3.1 0.095 13.0 0.1 7.0 7 0 0 7 7 6 3 HEAT repeat HEAT_EZ PF13513.6 gi|385802719|ref|YP_005839119.1| - 9.3e-14 51.6 8.7 0.00012 22.5 0.1 5.8 4 3 2 6 6 6 4 HEAT-like repeat Cnd1 PF12717.7 gi|385802719|ref|YP_005839119.1| - 1.5e-11 44.6 0.0 4.3e-06 26.9 0.0 3.4 2 2 1 3 3 3 3 non-SMC mitotic condensation complex subunit 1 Arm PF00514.23 gi|385802719|ref|YP_005839119.1| - 3.2e-08 33.3 6.6 0.044 13.9 0.1 6.5 7 0 0 7 7 6 1 Armadillo/beta-catenin-like repeat HEAT_PBS PF03130.16 gi|385802719|ref|YP_005839119.1| - 3e-06 27.4 4.3 14 6.7 0.0 6.1 6 0 0 6 6 6 0 PBS lyase HEAT-like repeat RTP1_C1 PF10363.9 gi|385802719|ref|YP_005839119.1| - 4.3e-06 26.9 0.3 0.088 13.0 0.0 4.2 1 1 2 3 3 3 2 Required for nuclear transport of RNA pol II C-terminus 1 Vac14_Fab1_bd PF12755.7 gi|385802719|ref|YP_005839119.1| - 6.6e-05 23.4 0.2 0.0035 17.9 0.0 3.3 3 1 1 4 4 4 1 Vacuolar 14 Fab1-binding region TAF6_C PF07571.13 gi|385802719|ref|YP_005839119.1| - 0.00093 19.5 0.0 0.77 10.1 0.0 3.5 1 1 1 3 3 3 1 TAF6 C-terminal HEAT repeat domain DUF5578 PF17741.1 gi|385802719|ref|YP_005839119.1| - 0.0045 16.4 0.1 0.44 9.9 0.0 3.1 1 1 2 4 4 4 1 Family of unknown function (DUF5578) API5 PF05918.11 gi|385802719|ref|YP_005839119.1| - 0.0052 15.7 0.2 1.7 7.4 0.0 2.7 2 1 0 3 3 3 1 Apoptosis inhibitory protein 5 (API5) Vitellogenin_N PF01347.22 gi|385802719|ref|YP_005839119.1| - 0.0058 15.1 0.0 0.13 10.7 0.0 2.3 1 1 1 2 2 2 1 Lipoprotein amino terminal region TPR_6 PF13174.6 gi|385802719|ref|YP_005839119.1| - 0.0075 16.8 0.5 68 4.4 0.0 5.1 6 0 0 6 6 5 0 Tetratricopeptide repeat NUC130_3NT PF08158.12 gi|385802719|ref|YP_005839119.1| - 0.011 16.1 0.0 34 4.8 0.0 3.9 4 0 0 4 4 4 0 NUC130/3NT domain Gcn1_N PF12074.8 gi|385802719|ref|YP_005839119.1| - 0.011 15.0 0.2 0.1 11.9 0.0 2.7 1 1 3 4 4 4 0 Generalcontrol nonderepressible 1 (Gcn1) N-terminal SPG48 PF14764.6 gi|385802719|ref|YP_005839119.1| - 0.028 14.9 0.1 0.26 11.8 0.0 2.6 2 1 1 3 3 2 0 AP-5 complex subunit, vesicle trafficking RasGEF_N_2 PF14663.6 gi|385802719|ref|YP_005839119.1| - 0.051 14.0 0.1 0.48 10.8 0.0 2.6 2 2 0 2 2 2 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain Nipped-B_C PF12830.7 gi|385802719|ref|YP_005839119.1| - 0.2 11.6 0.1 18 5.2 0.0 3.6 3 2 1 4 4 4 0 Sister chromatid cohesion C-terminus RTP1_C2 PF10304.9 gi|385802719|ref|YP_005839119.1| - 0.31 10.8 3.9 2.4 7.9 0.0 3.5 3 0 0 3 3 3 0 Required for nuclear transport of RNA pol II C-terminus 2 NucS PF01939.16 gi|385802720|ref|YP_005839120.1| - 0.0023 17.3 0.1 0.0042 16.5 0.1 1.4 1 0 0 1 1 1 1 Endonuclease NucS eIF2_C PF09173.11 gi|385802721|ref|YP_005839121.1| - 4.9e-30 103.6 0.1 1.2e-29 102.4 0.1 1.7 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU PF00009.27 gi|385802721|ref|YP_005839121.1| - 1e-29 103.5 2.6 6.2e-29 100.9 2.6 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|385802721|ref|YP_005839121.1| - 2.1e-08 34.4 1.5 5.9e-08 33.0 1.5 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|385802721|ref|YP_005839121.1| - 1.7e-05 24.8 0.3 0.002 18.1 0.1 2.2 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|385802721|ref|YP_005839121.1| - 7e-05 22.9 0.0 0.00015 21.8 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|385802721|ref|YP_005839121.1| - 0.0033 17.2 0.8 0.25 11.1 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.18 gi|385802721|ref|YP_005839121.1| - 0.033 13.7 1.3 5.5 6.5 0.0 2.5 2 1 0 2 2 2 0 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|385802721|ref|YP_005839121.1| - 0.048 13.7 0.1 0.09 12.8 0.1 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain SRPRB PF09439.10 gi|385802721|ref|YP_005839121.1| - 0.16 11.4 0.0 11 5.4 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit PIN_9 PF18477.1 gi|385802722|ref|YP_005839122.1| - 5.6e-32 110.5 3.8 2.3e-25 89.2 0.4 2.2 1 1 1 2 2 2 2 PIN like domain DUF188 PF02639.14 gi|385802722|ref|YP_005839122.1| - 0.0024 17.5 0.6 1.7 8.3 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized BCR, YaiI/YqxD family COG1671 SHS2_Rpb7-N PF03876.17 gi|385802723|ref|YP_005839123.1| - 4e-15 55.9 0.0 6.2e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|385802723|ref|YP_005839123.1| - 1.5e-14 54.1 0.5 2.7e-14 53.2 0.5 1.4 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|385802723|ref|YP_005839123.1| - 0.012 15.8 0.0 0.019 15.2 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit Rpc25 S1_2 PF13509.6 gi|385802723|ref|YP_005839123.1| - 0.042 13.9 0.0 0.81 9.8 0.0 2.3 1 1 0 1 1 1 0 S1 domain Spt4 PF06093.13 gi|385802724|ref|YP_005839124.1| - 3.7e-14 52.6 0.2 4.4e-14 52.3 0.2 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.7 gi|385802724|ref|YP_005839124.1| - 0.00071 19.5 0.8 0.00091 19.2 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RanBP PF00641.18 gi|385802724|ref|YP_005839124.1| - 0.0022 17.3 3.3 0.003 16.8 3.3 1.3 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others HypA PF01155.19 gi|385802724|ref|YP_005839124.1| - 0.008 16.2 0.7 0.0098 15.9 0.7 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|385802724|ref|YP_005839124.1| - 0.02 14.6 3.0 0.031 14.0 3.0 1.3 1 0 0 1 1 1 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|385802724|ref|YP_005839124.1| - 0.81 9.6 4.6 0.7 9.8 0.3 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.11 gi|385802724|ref|YP_005839124.1| - 1.2 9.1 6.2 7.3 6.6 1.6 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF359 PF04019.12 gi|385802725|ref|YP_005839125.1| - 2.6e-39 133.7 0.5 3.3e-39 133.4 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) DUF4911 PF16256.5 gi|385802725|ref|YP_005839125.1| - 0.01 15.8 0.1 0.044 13.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4911) RHH_1 PF01402.21 gi|385802726|ref|YP_005839126.1| - 0.00085 19.2 4.9 0.0033 17.3 1.3 2.6 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|385802726|ref|YP_005839126.1| - 0.024 14.6 0.0 0.04 13.9 0.0 1.3 1 0 0 1 1 1 0 Ribbon-helix-helix domain Ribosomal_S24e PF01282.19 gi|385802727|ref|YP_005839127.1| - 1.7e-26 91.9 0.1 2.2e-26 91.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Peptidase_M22 PF00814.25 gi|385802728|ref|YP_005839128.1| - 3.5e-73 246.6 0.0 4.9e-73 246.2 0.0 1.2 1 0 0 1 1 1 1 Glycoprotease family APH PF01636.23 gi|385802728|ref|YP_005839128.1| - 5.2e-05 23.3 6.9 0.027 14.4 0.8 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|385802728|ref|YP_005839128.1| - 0.0026 17.2 0.4 0.015 14.7 0.4 2.0 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family RIO1 PF01163.22 gi|385802728|ref|YP_005839128.1| - 0.054 13.1 0.0 0.11 12.0 0.0 1.4 1 1 0 1 1 1 0 RIO1 family Ham1p_like PF01725.16 gi|385802730|ref|YP_005839130.1| - 4.6e-47 160.4 0.0 5.4e-47 160.1 0.0 1.0 1 0 0 1 1 1 1 Ham1 family F-actin_cap_A PF01267.17 gi|385802730|ref|YP_005839130.1| - 0.17 11.3 0.1 0.26 10.7 0.1 1.2 1 0 0 1 1 1 0 F-actin capping protein alpha subunit PIN_3 PF13470.6 gi|385802731|ref|YP_005839131.1| - 0.0073 17.1 0.5 0.12 13.1 0.5 2.3 1 1 0 1 1 1 1 PIN domain PEPCK_ATP PF01293.20 gi|385802731|ref|YP_005839131.1| - 0.011 14.5 0.0 0.015 14.0 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase TrkA_N PF02254.18 gi|385802732|ref|YP_005839132.1| - 1.1e-24 87.0 0.2 1.6e-24 86.4 0.2 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|385802732|ref|YP_005839132.1| - 2.7e-10 39.9 0.1 5.8e-10 38.9 0.1 1.6 1 0 0 1 1 1 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.14 gi|385802732|ref|YP_005839132.1| - 2.1e-05 24.2 0.4 4.3e-05 23.2 0.3 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|385802732|ref|YP_005839132.1| - 0.00044 20.2 0.1 0.0011 18.9 0.1 1.7 1 1 1 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|385802732|ref|YP_005839132.1| - 0.00067 19.1 0.0 0.001 18.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|385802732|ref|YP_005839132.1| - 0.0012 19.0 0.3 0.0021 18.1 0.3 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_7 PF13241.6 gi|385802732|ref|YP_005839132.1| - 0.0014 19.0 0.1 0.0022 18.4 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding IlvN PF07991.12 gi|385802732|ref|YP_005839132.1| - 0.0017 17.9 0.1 0.0028 17.2 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Sacchrp_dh_NADP PF03435.18 gi|385802732|ref|YP_005839132.1| - 0.003 17.8 0.1 0.0039 17.4 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain XdhC_C PF13478.6 gi|385802732|ref|YP_005839132.1| - 0.005 17.3 0.0 0.01 16.3 0.0 1.5 1 1 0 1 1 1 1 XdhC Rossmann domain Epimerase PF01370.21 gi|385802732|ref|YP_005839132.1| - 0.0065 16.0 0.1 0.0083 15.6 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family FAD_binding_3 PF01494.19 gi|385802732|ref|YP_005839132.1| - 0.0087 15.3 0.0 0.011 15.0 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain F420_oxidored PF03807.17 gi|385802732|ref|YP_005839132.1| - 0.018 15.6 0.0 0.031 14.8 0.0 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|385802732|ref|YP_005839132.1| - 0.019 15.2 0.1 0.038 14.2 0.0 1.6 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase ADH_zinc_N PF00107.26 gi|385802732|ref|YP_005839132.1| - 0.026 14.5 0.0 0.2 11.6 0.0 2.2 1 1 1 2 2 2 0 Zinc-binding dehydrogenase ApbA PF02558.16 gi|385802732|ref|YP_005839132.1| - 0.085 12.5 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Gmad2 PF10648.9 gi|385802733|ref|YP_005839133.1| - 1.2e-06 28.7 0.2 3e-06 27.4 0.2 1.6 1 0 0 1 1 1 1 Immunoglobulin-like domain of bacterial spore germination DotU PF09850.9 gi|385802733|ref|YP_005839133.1| - 0.24 11.1 0.0 1.5 8.5 0.0 2.1 2 0 0 2 2 2 0 Type VI secretion system protein DotU DUF4366 PF14283.6 gi|385802733|ref|YP_005839133.1| - 0.32 11.0 2.0 0.39 10.8 0.4 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4366) Rib_recp_KP_reg PF05104.12 gi|385802733|ref|YP_005839133.1| - 0.4 11.7 4.3 0.59 11.2 4.3 1.2 1 0 0 1 1 1 0 Ribosome receptor lysine/proline rich region MGC-24 PF05283.11 gi|385802733|ref|YP_005839133.1| - 0.89 10.0 13.1 0.26 11.7 9.8 1.7 2 0 0 2 2 2 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin DUF4191 PF13829.6 gi|385802734|ref|YP_005839134.1| - 4.4 6.6 6.7 4.4 6.6 6.7 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) PALP PF00291.25 gi|385802735|ref|YP_005839135.1| - 2.6e-82 276.6 9.8 3.2e-82 276.2 9.8 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.6 gi|385802735|ref|YP_005839135.1| - 1.6e-05 25.4 0.2 0.00037 21.0 0.0 2.7 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|385802735|ref|YP_005839135.1| - 0.0015 18.2 0.1 0.0015 18.2 0.1 2.7 3 0 0 3 3 3 1 ACT domain REF PF05755.12 gi|385802735|ref|YP_005839135.1| - 0.18 11.6 1.1 3.5 7.4 0.1 2.3 2 0 0 2 2 2 0 Rubber elongation factor protein (REF) Citrate_synt PF00285.21 gi|385802736|ref|YP_005839136.1| - 2.4e-123 411.8 0.1 2.7e-123 411.6 0.1 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain SpoIIE PF07228.12 gi|385802736|ref|YP_005839136.1| - 0.0047 16.9 0.8 0.01 15.8 0.0 1.9 2 1 0 2 2 2 1 Stage II sporulation protein E (SpoIIE) TrkA_C PF02080.21 gi|385802737|ref|YP_005839137.1| - 2.7e-31 107.2 0.2 1.6e-17 63.1 0.0 2.5 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.19 gi|385802737|ref|YP_005839137.1| - 1.1e-17 64.2 6.9 1.7e-08 34.8 2.5 2.5 2 0 0 2 2 2 2 PhoU domain NBD_C PF17042.5 gi|385802737|ref|YP_005839137.1| - 0.051 14.1 0.6 0.051 14.1 0.6 2.3 2 1 0 2 2 2 0 Nucleotide-binding C-terminal domain TraF_2 PF13729.6 gi|385802737|ref|YP_005839137.1| - 0.053 12.9 0.2 0.66 9.3 0.1 2.2 2 1 1 3 3 3 0 F plasmid transfer operon, TraF, protein bZIP_2 PF07716.15 gi|385802737|ref|YP_005839137.1| - 0.13 12.4 0.5 4.4 7.5 0.0 2.4 2 0 0 2 2 2 0 Basic region leucine zipper CLZ PF16526.5 gi|385802737|ref|YP_005839137.1| - 0.2 12.0 1.8 11 6.4 0.0 2.5 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels KfrA_N PF11740.8 gi|385802737|ref|YP_005839137.1| - 0.73 10.5 7.0 0.66 10.7 0.2 3.4 4 1 0 4 4 4 0 Plasmid replication region DNA-binding N-term DUF2273 PF10031.9 gi|385802738|ref|YP_005839138.1| - 0.051 13.6 2.2 0.051 13.6 2.2 2.0 2 1 0 2 2 2 0 Small integral membrane protein (DUF2273) Wzy_C PF04932.15 gi|385802738|ref|YP_005839138.1| - 0.35 10.5 6.5 0.43 10.2 6.5 1.1 1 0 0 1 1 1 0 O-Antigen ligase AstE_AspA PF04952.14 gi|385802739|ref|YP_005839139.1| - 3.2e-52 177.4 0.0 3.7e-52 177.2 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family PCMT PF01135.19 gi|385802741|ref|YP_005839141.1| - 8.5e-31 107.3 0.3 1.9e-25 89.9 0.1 2.1 2 0 0 2 2 2 2 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|385802741|ref|YP_005839141.1| - 1.1e-06 28.5 0.0 1.5e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|385802741|ref|YP_005839141.1| - 2e-06 27.4 0.0 3.7e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|385802741|ref|YP_005839141.1| - 5.5e-05 23.8 0.0 9.9e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|385802741|ref|YP_005839141.1| - 0.0016 19.2 0.1 0.0037 18.0 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Met_10 PF02475.16 gi|385802741|ref|YP_005839141.1| - 0.0029 17.4 0.0 0.0043 16.8 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_32 PF13679.6 gi|385802741|ref|YP_005839141.1| - 0.0031 17.5 0.1 0.0049 16.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|385802741|ref|YP_005839141.1| - 0.027 15.1 0.0 0.054 14.1 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|385802741|ref|YP_005839141.1| - 0.049 13.6 0.0 0.076 12.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 gi|385802741|ref|YP_005839141.1| - 0.05 13.0 0.1 0.081 12.3 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltr_RsmB-F PF01189.17 gi|385802741|ref|YP_005839141.1| - 0.081 12.6 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F UPF0020 PF01170.18 gi|385802741|ref|YP_005839141.1| - 0.11 12.2 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 AviRa PF11599.8 gi|385802741|ref|YP_005839141.1| - 0.18 11.2 0.0 0.29 10.5 0.0 1.3 1 0 0 1 1 1 0 RRNA methyltransferase AviRa DUF2387 PF09526.10 gi|385802742|ref|YP_005839142.1| - 0.0053 16.9 0.3 0.0099 16.0 0.3 1.4 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) Elf1 PF05129.13 gi|385802742|ref|YP_005839142.1| - 0.14 12.2 0.3 0.24 11.5 0.3 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Nudix_N_2 PF14803.6 gi|385802742|ref|YP_005839142.1| - 0.61 10.0 5.1 1.8 8.5 5.1 1.8 1 1 0 1 1 1 0 Nudix N-terminal zinc_ribbon_4 PF13717.6 gi|385802742|ref|YP_005839142.1| - 0.66 9.9 6.9 4.9 7.2 6.5 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Peptidase_M29 PF02073.15 gi|385802743|ref|YP_005839143.1| - 3e-13 49.3 0.1 1.4e-10 40.5 0.0 2.1 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) FAM24 PF15193.6 gi|385802743|ref|YP_005839143.1| - 0.051 14.4 0.3 0.14 13.0 0.1 1.8 2 0 0 2 2 2 0 FAM24 family Gp_dh_C PF02800.20 gi|385802744|ref|YP_005839144.1| - 5.9e-20 71.5 0.0 9e-20 70.9 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|385802744|ref|YP_005839144.1| - 1.8e-09 37.8 0.2 8.6e-09 35.6 0.1 2.1 1 1 1 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|385802744|ref|YP_005839144.1| - 5e-06 26.8 0.2 3.3e-05 24.1 0.0 2.4 3 0 0 3 3 3 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|385802744|ref|YP_005839144.1| - 0.0033 16.8 0.3 0.011 15.1 0.1 1.9 2 1 1 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|385802744|ref|YP_005839144.1| - 0.0034 18.0 0.0 0.01 16.5 0.0 1.8 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|385802744|ref|YP_005839144.1| - 0.039 14.8 0.0 0.1 13.4 0.0 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DUF4143 PF13635.6 gi|385802744|ref|YP_005839144.1| - 0.13 12.4 0.0 0.18 12.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) Metallophos_2 PF12850.7 gi|385802745|ref|YP_005839145.1| - 5e-18 65.8 0.1 5.6e-18 65.7 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|385802745|ref|YP_005839145.1| - 1.5e-06 28.9 0.3 1.2e-05 26.0 0.3 2.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase OATP PF03137.20 gi|385802746|ref|YP_005839146.1| - 0.1 10.9 0.0 0.1 10.9 0.0 1.0 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family Peptidase_M24 PF00557.24 gi|385802747|ref|YP_005839147.1| - 5.7e-18 65.4 0.7 3e-17 63.0 0.1 2.3 1 1 1 2 2 2 2 Metallopeptidase family M24 DZR PF12773.7 gi|385802749|ref|YP_005839149.1| - 0.0022 18.0 0.2 0.0022 18.0 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|385802749|ref|YP_005839149.1| - 0.0046 16.6 0.6 0.0077 15.9 0.6 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|385802749|ref|YP_005839149.1| - 0.0069 15.8 2.9 0.0069 15.8 2.9 1.5 2 0 0 2 2 2 1 zinc-ribbon domain Cytochrom_c3_2 PF14537.6 gi|385802749|ref|YP_005839149.1| - 0.011 16.2 0.6 0.013 16.0 0.6 1.1 1 0 0 1 1 1 0 Cytochrome c3 zf-IS66 PF13005.7 gi|385802749|ref|YP_005839149.1| - 0.032 14.6 1.1 0.044 14.2 1.1 1.3 1 0 0 1 1 1 0 zinc-finger binding domain of transposase IS66 CpXC PF14353.6 gi|385802749|ref|YP_005839149.1| - 0.04 14.0 0.1 0.044 13.8 0.1 1.2 1 0 0 1 1 1 0 CpXC protein zf-NADH-PPase PF09297.11 gi|385802749|ref|YP_005839149.1| - 0.08 12.6 2.1 0.16 11.7 0.1 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain PBECR5 PF18814.1 gi|385802749|ref|YP_005839149.1| - 0.16 11.9 0.0 0.17 11.8 0.0 1.0 1 0 0 1 1 1 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5 Zn-ribbon_8 PF09723.10 gi|385802749|ref|YP_005839149.1| - 0.29 11.3 0.3 0.29 11.3 0.3 2.0 1 1 1 2 2 2 0 Zinc ribbon domain Trypan_PARP PF05887.11 gi|385802750|ref|YP_005839150.1| - 0.0015 18.5 0.2 0.0027 17.7 0.2 1.5 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) Neisseria_TspB PF05616.13 gi|385802750|ref|YP_005839150.1| - 8.5 4.7 5.5 12 4.3 5.5 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein Peptidase_M32 PF02074.15 gi|385802751|ref|YP_005839151.1| - 2.3e-177 590.7 0.1 2.6e-177 590.5 0.1 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase Peptidase_M20 PF01546.28 gi|385802752|ref|YP_005839152.1| - 8e-28 97.6 1.7 9.6e-28 97.3 1.7 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|385802752|ref|YP_005839152.1| - 3.1e-14 52.8 0.2 7.3e-14 51.6 0.2 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain DUF1108 PF06531.11 gi|385802752|ref|YP_005839152.1| - 0.045 14.1 0.1 0.12 12.8 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1108) T2SSE PF00437.20 gi|385802753|ref|YP_005839153.1| - 1.9e-12 46.8 0.0 3.6e-12 45.9 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|385802753|ref|YP_005839153.1| - 0.00074 19.9 0.0 0.0018 18.7 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|385802753|ref|YP_005839153.1| - 0.0022 17.7 0.0 0.0065 16.2 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain KH_1 PF00013.29 gi|385802753|ref|YP_005839153.1| - 0.0022 17.8 0.1 0.0071 16.2 0.1 1.9 1 0 0 1 1 1 1 KH domain AAA_30 PF13604.6 gi|385802753|ref|YP_005839153.1| - 0.0022 17.7 0.2 0.034 13.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|385802753|ref|YP_005839153.1| - 0.0024 17.8 0.0 0.0064 16.4 0.0 1.7 1 0 0 1 1 1 1 NTPase KH_2 PF07650.17 gi|385802753|ref|YP_005839153.1| - 0.0039 17.0 1.5 0.011 15.5 1.5 1.7 1 0 0 1 1 1 1 KH domain Thymidylate_kin PF02223.17 gi|385802753|ref|YP_005839153.1| - 0.004 16.9 0.0 0.019 14.6 0.0 1.9 1 1 1 2 2 2 1 Thymidylate kinase AAA_33 PF13671.6 gi|385802753|ref|YP_005839153.1| - 0.0093 16.1 0.1 0.03 14.5 0.0 1.9 2 0 0 2 2 1 1 AAA domain Zeta_toxin PF06414.12 gi|385802753|ref|YP_005839153.1| - 0.013 14.8 0.0 0.036 13.4 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin KTI12 PF08433.10 gi|385802753|ref|YP_005839153.1| - 0.019 14.4 0.0 0.039 13.4 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|385802753|ref|YP_005839153.1| - 0.03 14.9 0.0 0.068 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|385802753|ref|YP_005839153.1| - 0.032 14.2 0.0 0.065 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|385802753|ref|YP_005839153.1| - 0.039 14.4 0.0 0.081 13.3 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PIN_4 PF13638.6 gi|385802753|ref|YP_005839153.1| - 0.04 14.2 0.0 0.14 12.4 0.0 2.0 1 1 0 1 1 1 0 PIN domain TsaE PF02367.17 gi|385802753|ref|YP_005839153.1| - 0.044 13.8 0.0 0.11 12.5 0.0 1.7 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF2620 PF10941.8 gi|385802753|ref|YP_005839153.1| - 0.044 13.9 0.8 0.12 12.5 0.2 2.1 2 0 0 2 2 1 0 Protein of unknown function DUF2620 ATP_bind_1 PF03029.17 gi|385802753|ref|YP_005839153.1| - 0.05 13.4 0.0 0.086 12.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein FliMN_C PF01052.20 gi|385802753|ref|YP_005839153.1| - 0.064 13.3 0.1 0.25 11.4 0.1 2.0 1 0 0 1 1 1 0 Type III flagellar switch regulator (C-ring) FliN C-term AAA_22 PF13401.6 gi|385802753|ref|YP_005839153.1| - 0.086 13.1 0.0 0.26 11.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|385802753|ref|YP_005839153.1| - 0.088 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.21 gi|385802753|ref|YP_005839153.1| - 0.13 11.6 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|385802753|ref|YP_005839153.1| - 0.14 11.9 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein Sigma54_activ_2 PF14532.6 gi|385802753|ref|YP_005839153.1| - 0.16 12.1 0.0 0.78 9.9 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_7 PF12775.7 gi|385802753|ref|YP_005839153.1| - 0.17 11.4 0.0 0.31 10.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|385802753|ref|YP_005839153.1| - 0.17 12.2 0.0 0.38 11.2 0.0 1.6 1 0 0 1 1 1 0 RNA helicase KH_4 PF13083.6 gi|385802753|ref|YP_005839153.1| - 0.18 11.7 1.4 0.64 9.9 0.6 2.4 2 0 0 2 2 1 0 KH domain AAA_25 PF13481.6 gi|385802753|ref|YP_005839153.1| - 1.1 8.8 4.5 2.7 7.5 1.2 2.8 2 1 0 2 2 2 0 AAA domain HTH_24 PF13412.6 gi|385802754|ref|YP_005839154.1| - 0.013 15.0 0.0 0.019 14.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|385802754|ref|YP_005839154.1| - 0.027 14.4 0.0 0.044 13.7 0.0 1.3 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|385802754|ref|YP_005839154.1| - 0.029 14.2 0.1 0.04 13.8 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB AF-4 PF05110.13 gi|385802754|ref|YP_005839154.1| - 0.037 12.1 1.7 0.041 12.0 1.7 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein MarR_2 PF12802.7 gi|385802754|ref|YP_005839154.1| - 0.069 13.0 0.0 0.09 12.7 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|385802754|ref|YP_005839154.1| - 0.086 13.3 0.0 0.12 12.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain GntR PF00392.21 gi|385802754|ref|YP_005839154.1| - 0.097 12.3 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF2540 PF10802.8 gi|385802754|ref|YP_005839154.1| - 0.15 12.2 0.1 0.25 11.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2540) DUF1634 PF07843.11 gi|385802755|ref|YP_005839155.1| - 0.00027 21.0 2.8 0.00038 20.5 2.8 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1634) MerE PF05052.12 gi|385802755|ref|YP_005839155.1| - 0.26 11.3 3.4 0.19 11.7 2.2 1.4 1 1 0 1 1 1 0 MerE protein ABC_tran PF00005.27 gi|385802756|ref|YP_005839156.1| - 1.1e-36 126.4 0.0 1.1e-16 61.6 0.1 3.0 2 1 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|385802756|ref|YP_005839156.1| - 6.2e-15 55.2 2.3 0.00019 20.9 0.1 4.3 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|385802756|ref|YP_005839156.1| - 3.9e-12 45.8 1.0 8.1e-12 44.8 1.0 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.6 gi|385802756|ref|YP_005839156.1| - 1.2e-10 41.7 5.0 0.047 13.5 0.1 4.2 2 2 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|385802756|ref|YP_005839156.1| - 8.8e-09 36.0 0.6 0.00057 20.3 0.0 3.1 2 1 1 3 3 3 2 AAA ATPase domain AAA_23 PF13476.6 gi|385802756|ref|YP_005839156.1| - 1.3e-07 32.3 0.0 0.0092 16.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|385802756|ref|YP_005839156.1| - 3.4e-07 30.6 0.1 0.0021 18.4 0.0 2.7 3 1 0 3 3 2 2 AAA domain AAA PF00004.29 gi|385802756|ref|YP_005839156.1| - 8.6e-06 26.2 0.0 0.035 14.5 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|385802756|ref|YP_005839156.1| - 2.5e-05 24.6 0.0 0.25 11.8 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_24 PF13479.6 gi|385802756|ref|YP_005839156.1| - 5.5e-05 23.0 0.0 0.072 12.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|385802756|ref|YP_005839156.1| - 0.00014 21.9 0.0 1.2 9.1 0.0 3.6 3 1 1 4 4 4 1 AAA domain AAA_29 PF13555.6 gi|385802756|ref|YP_005839156.1| - 0.00017 21.2 0.3 0.28 11.0 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain NACHT PF05729.12 gi|385802756|ref|YP_005839156.1| - 0.00024 21.1 0.0 0.45 10.4 0.0 2.6 2 0 0 2 2 2 2 NACHT domain Fer4 PF00037.27 gi|385802756|ref|YP_005839156.1| - 0.0003 20.5 1.4 0.0003 20.5 1.4 3.0 3 0 0 3 3 3 1 4Fe-4S binding domain RsgA_GTPase PF03193.16 gi|385802756|ref|YP_005839156.1| - 0.00037 20.4 0.0 0.51 10.2 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_33 PF13671.6 gi|385802756|ref|YP_005839156.1| - 0.00058 20.0 0.1 1.8 8.8 0.0 3.0 3 0 0 3 3 2 2 AAA domain Rad17 PF03215.15 gi|385802756|ref|YP_005839156.1| - 0.00071 19.5 0.0 0.077 12.9 0.0 2.7 2 1 0 2 2 2 1 Rad17 P-loop domain AAA_15 PF13175.6 gi|385802756|ref|YP_005839156.1| - 0.0031 17.3 0.3 2.7 7.6 0.1 2.9 2 1 0 3 3 3 1 AAA ATPase domain Fer4_6 PF12837.7 gi|385802756|ref|YP_005839156.1| - 0.0032 17.5 13.0 0.052 13.7 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_30 PF13604.6 gi|385802756|ref|YP_005839156.1| - 0.0047 16.7 2.6 0.24 11.1 0.5 2.8 3 1 0 3 3 2 1 AAA domain AAA_5 PF07728.14 gi|385802756|ref|YP_005839156.1| - 0.0065 16.5 0.0 1.9 8.5 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) NB-ARC PF00931.22 gi|385802756|ref|YP_005839156.1| - 0.0077 15.4 0.0 0.42 9.7 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain AAA_18 PF13238.6 gi|385802756|ref|YP_005839156.1| - 0.0091 16.5 0.1 2.3 8.8 0.0 2.9 2 1 0 2 2 2 1 AAA domain TsaE PF02367.17 gi|385802756|ref|YP_005839156.1| - 0.01 15.8 0.0 1.3 9.0 0.0 2.6 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NTPase_1 PF03266.15 gi|385802756|ref|YP_005839156.1| - 0.025 14.5 1.8 6 6.7 0.1 3.1 3 0 0 3 3 3 0 NTPase MMR_HSR1 PF01926.23 gi|385802756|ref|YP_005839156.1| - 0.025 14.6 0.4 9.5 6.3 0.3 2.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_28 PF13521.6 gi|385802756|ref|YP_005839156.1| - 0.038 14.2 5.6 0.14 12.4 0.0 3.3 4 0 0 4 4 3 0 AAA domain Fer4_10 PF13237.6 gi|385802756|ref|YP_005839156.1| - 0.055 13.6 10.1 0.32 11.1 10.8 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain SRP54 PF00448.22 gi|385802756|ref|YP_005839156.1| - 0.059 13.0 1.1 2.6 7.6 0.1 2.5 3 0 0 3 3 2 0 SRP54-type protein, GTPase domain MukB PF04310.12 gi|385802756|ref|YP_005839156.1| - 0.068 13.0 0.2 1.4 8.6 0.1 2.2 2 0 0 2 2 2 0 MukB N-terminal RuvB_N PF05496.12 gi|385802756|ref|YP_005839156.1| - 0.079 12.7 0.1 21 4.8 0.0 2.7 3 0 0 3 3 2 0 Holliday junction DNA helicase RuvB P-loop domain IstB_IS21 PF01695.17 gi|385802756|ref|YP_005839156.1| - 0.085 12.6 0.1 7.3 6.3 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|385802756|ref|YP_005839156.1| - 0.097 12.0 0.0 16 4.8 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Fer4_7 PF12838.7 gi|385802756|ref|YP_005839156.1| - 0.1 13.2 9.4 0.26 11.9 9.4 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|385802756|ref|YP_005839156.1| - 0.16 12.1 9.0 0.31 11.2 9.0 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Roc PF08477.13 gi|385802756|ref|YP_005839156.1| - 0.18 12.1 0.1 32 4.8 0.0 3.1 2 1 1 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase AAA_27 PF13514.6 gi|385802756|ref|YP_005839156.1| - 0.21 11.2 0.0 9.4 5.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|385802756|ref|YP_005839156.1| - 0.22 11.4 0.0 21 4.9 0.0 2.4 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea MeaB PF03308.16 gi|385802756|ref|YP_005839156.1| - 0.27 10.2 0.8 7.2 5.5 0.0 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF87 PF01935.17 gi|385802756|ref|YP_005839156.1| - 0.39 10.8 1.4 22 5.1 0.1 3.1 3 1 0 3 3 3 0 Helicase HerA, central domain Fer4_21 PF14697.6 gi|385802756|ref|YP_005839156.1| - 0.64 10.2 7.6 1.2 9.3 7.6 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|385802756|ref|YP_005839156.1| - 0.67 10.9 8.4 2 9.4 8.4 1.8 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|385802756|ref|YP_005839156.1| - 0.82 9.9 11.6 0.2 11.8 1.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain AAA_25 PF13481.6 gi|385802756|ref|YP_005839156.1| - 1.6 8.3 7.4 26 4.3 0.0 3.7 4 0 0 4 4 4 0 AAA domain Usp PF00582.26 gi|385802757|ref|YP_005839157.1| - 3.7e-21 76.1 5.2 1.1e-20 74.5 5.2 1.6 1 1 0 1 1 1 1 Universal stress protein family Peptidase_M54 PF07998.11 gi|385802758|ref|YP_005839158.1| - 2.6e-22 79.8 0.0 3.4e-22 79.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Reprolysin_4 PF13583.6 gi|385802758|ref|YP_005839158.1| - 1.6e-06 28.0 0.0 1.9e-06 27.7 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like DUF4953 PF16313.5 gi|385802758|ref|YP_005839158.1| - 7.8e-05 22.0 0.0 0.00011 21.6 0.0 1.2 1 0 0 1 1 1 1 Met-zincin Reprolysin_2 PF13574.6 gi|385802758|ref|YP_005839158.1| - 0.00012 22.1 0.0 0.00013 22.0 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.6 gi|385802758|ref|YP_005839158.1| - 0.00024 21.6 0.0 0.00033 21.2 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M10 PF00413.24 gi|385802758|ref|YP_005839158.1| - 0.00025 20.9 0.0 0.00026 20.9 0.0 1.3 1 0 0 1 1 1 1 Matrixin Reprolysin_5 PF13688.6 gi|385802758|ref|YP_005839158.1| - 0.00053 20.2 0.0 0.00059 20.0 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 Zincin_1 PF06262.11 gi|385802758|ref|YP_005839158.1| - 0.0053 16.8 0.0 0.011 15.8 0.0 1.5 1 0 0 1 1 1 1 Zincin-like metallopeptidase Peptidase_M66 PF10462.9 gi|385802758|ref|YP_005839158.1| - 0.0058 15.6 0.0 0.0066 15.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase M66 Metallopep PF12044.8 gi|385802758|ref|YP_005839158.1| - 0.0079 14.8 0.1 0.011 14.4 0.1 1.2 1 0 0 1 1 1 1 Putative peptidase family Peptidase_M57 PF12388.8 gi|385802758|ref|YP_005839158.1| - 0.075 12.6 0.0 0.16 11.6 0.0 1.6 2 0 0 2 2 2 0 Dual-action HEIGH metallo-peptidase UPF0146 PF03686.13 gi|385802759|ref|YP_005839159.1| - 4.3e-21 75.1 0.1 4.8e-21 75.0 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) HAD_2 PF13419.6 gi|385802760|ref|YP_005839160.1| - 8.1e-11 42.3 0.3 4.1e-08 33.5 0.0 2.2 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|385802760|ref|YP_005839160.1| - 2.1e-10 41.2 0.0 9.6e-10 39.1 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|385802760|ref|YP_005839160.1| - 9.3e-06 25.6 1.0 2.3e-05 24.3 0.2 2.0 2 0 0 2 2 2 1 HAD-hyrolase-like Lactamase_B PF00753.27 gi|385802761|ref|YP_005839161.1| - 1.6e-13 51.1 4.7 3.3e-11 43.6 4.7 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|385802761|ref|YP_005839161.1| - 0.0017 17.9 2.1 0.0034 16.9 2.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF99 PF01949.16 gi|385802763|ref|YP_005839163.1| - 6.2e-58 195.2 0.1 7.3e-58 195.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF99 UDG PF03167.19 gi|385802764|ref|YP_005839164.1| - 1.2e-38 132.6 0.0 1.5e-38 132.2 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily ABC_tran PF00005.27 gi|385802766|ref|YP_005839166.1| - 7.3e-32 110.8 0.1 1.2e-31 110.1 0.1 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385802766|ref|YP_005839166.1| - 1.5e-10 41.4 0.3 0.0005 20.0 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|385802766|ref|YP_005839166.1| - 7e-05 22.8 0.1 0.00019 21.4 0.1 1.6 1 0 0 1 1 1 1 RsgA GTPase SMC_N PF02463.19 gi|385802766|ref|YP_005839166.1| - 0.00015 21.2 0.1 0.1 12.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 gi|385802766|ref|YP_005839166.1| - 0.00025 21.1 0.4 0.16 12.1 0.1 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|385802766|ref|YP_005839166.1| - 0.00032 20.4 0.1 0.00066 19.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|385802766|ref|YP_005839166.1| - 0.00049 20.5 0.7 0.001 19.5 0.7 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|385802766|ref|YP_005839166.1| - 0.00082 19.9 0.0 0.002 18.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|385802766|ref|YP_005839166.1| - 0.0019 16.9 0.0 1.1 7.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|385802766|ref|YP_005839166.1| - 0.0063 16.2 0.6 0.011 15.4 0.6 1.5 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|385802766|ref|YP_005839166.1| - 0.015 15.5 0.3 0.62 10.3 0.3 2.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 gi|385802766|ref|YP_005839166.1| - 0.017 15.4 0.2 0.032 14.5 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|385802766|ref|YP_005839166.1| - 0.028 14.9 0.1 0.069 13.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|385802766|ref|YP_005839166.1| - 0.031 14.5 0.3 0.068 13.4 0.3 1.6 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|385802766|ref|YP_005839166.1| - 0.13 12.2 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_15 PF13175.6 gi|385802766|ref|YP_005839166.1| - 0.16 11.6 0.0 0.6 9.8 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain Phosphonate-bd PF12974.7 gi|385802767|ref|YP_005839167.1| - 1.6e-56 191.6 0.8 1.9e-56 191.4 0.8 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 gi|385802767|ref|YP_005839167.1| - 0.00032 20.2 0.2 0.00051 19.5 0.0 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 TAT_signal PF10518.9 gi|385802767|ref|YP_005839167.1| - 0.0015 18.3 0.7 0.0015 18.3 0.7 2.2 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence DUF4223 PF13978.6 gi|385802767|ref|YP_005839167.1| - 0.078 12.9 0.8 1.2 9.2 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4223) GATase PF00117.28 gi|385802768|ref|YP_005839168.1| - 1.2e-23 83.9 0.0 1.5e-23 83.6 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|385802768|ref|YP_005839168.1| - 4.3e-08 33.2 0.0 1.3e-07 31.7 0.0 1.7 1 1 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|385802768|ref|YP_005839168.1| - 5.9e-08 32.5 0.0 1.3e-07 31.5 0.0 1.6 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|385802768|ref|YP_005839168.1| - 9.2e-06 25.6 0.1 0.0051 16.6 0.0 2.3 3 0 0 3 3 3 2 Peptidase C26 DJ-1_PfpI PF01965.24 gi|385802768|ref|YP_005839168.1| - 0.00099 18.9 0.0 0.0015 18.3 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_5 PF13507.6 gi|385802768|ref|YP_005839168.1| - 0.052 12.6 0.0 0.6 9.2 0.1 2.5 2 1 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain PDT PF00800.18 gi|385802769|ref|YP_005839169.1| - 4e-45 153.9 0.2 4.9e-45 153.6 0.2 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|385802769|ref|YP_005839169.1| - 8.5e-07 28.6 0.0 3e-06 26.9 0.0 2.0 2 0 0 2 2 2 1 ACT domain FeS_assembly_P PF01883.19 gi|385802771|ref|YP_005839171.1| - 1.3e-13 50.9 0.0 3e-13 49.7 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein Amidohydro_2 PF04909.14 gi|385802772|ref|YP_005839172.1| - 1.9e-38 132.9 2.7 2.2e-38 132.7 2.7 1.0 1 0 0 1 1 1 1 Amidohydrolase OCD_Mu_crystall PF02423.15 gi|385802774|ref|YP_005839174.1| - 1.7e-88 296.6 0.6 2e-88 296.4 0.6 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|385802774|ref|YP_005839174.1| - 0.01 15.9 0.0 0.016 15.3 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Cpn60_TCP1 PF00118.24 gi|385802775|ref|YP_005839175.1| - 5.2e-162 539.9 15.1 5.9e-162 539.7 15.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF4286 PF14114.6 gi|385802775|ref|YP_005839175.1| - 0.17 12.4 0.1 0.46 11.0 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4286) CSD PF00313.22 gi|385802776|ref|YP_005839176.1| - 3.7e-20 71.5 0.1 4e-20 71.4 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|385802776|ref|YP_005839176.1| - 0.041 13.6 1.9 0.057 13.1 1.9 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.6 gi|385802776|ref|YP_005839176.1| - 0.12 12.4 0.2 0.14 12.1 0.2 1.3 1 1 0 1 1 1 0 S1-like VanZ PF04892.12 gi|385802777|ref|YP_005839177.1| - 5.9e-06 27.0 1.7 1.2e-05 26.0 1.7 1.5 1 1 0 1 1 1 1 VanZ like family Nramp PF01566.18 gi|385802777|ref|YP_005839177.1| - 0.0053 15.8 2.6 0.0064 15.5 2.6 1.2 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein DUF5463 PF17551.2 gi|385802777|ref|YP_005839177.1| - 0.014 15.3 1.0 0.027 14.4 1.0 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5463) NucS PF01939.16 gi|385802778|ref|YP_005839178.1| - 2.1e-61 207.2 0.0 2.4e-61 207.0 0.0 1.0 1 0 0 1 1 1 1 Endonuclease NucS YhcG_C PF06250.11 gi|385802778|ref|YP_005839178.1| - 0.0069 16.2 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 YhcG PDDEXK nuclease domain Ribosomal_L16 PF00252.18 gi|385802779|ref|YP_005839179.1| - 6.6e-28 97.3 0.0 8.4e-28 97.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e RimK PF08443.11 gi|385802780|ref|YP_005839180.1| - 1.4e-28 99.7 0.0 1.9e-28 99.4 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|385802780|ref|YP_005839180.1| - 4e-09 36.1 0.0 5.6e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_ST PF14397.6 gi|385802780|ref|YP_005839180.1| - 1.6e-08 34.2 0.0 0.0017 17.7 0.0 2.5 1 1 2 3 3 3 2 Sugar-transfer associated ATP-grasp ATP-grasp_3 PF02655.14 gi|385802780|ref|YP_005839180.1| - 3.7e-08 33.6 0.0 7.1e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|385802780|ref|YP_005839180.1| - 1.6e-06 27.8 0.0 2.3e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|385802780|ref|YP_005839180.1| - 0.0017 17.9 0.0 0.0025 17.3 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain TTL PF03133.15 gi|385802780|ref|YP_005839180.1| - 0.0031 16.7 0.0 1.2 8.2 0.0 2.3 2 0 0 2 2 2 2 Tubulin-tyrosine ligase family ATP-grasp_4 PF13535.6 gi|385802780|ref|YP_005839180.1| - 0.021 14.4 0.0 0.039 13.6 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|385802780|ref|YP_005839180.1| - 0.027 13.9 0.0 0.049 13.1 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain ArsA_HSP20 PF17886.1 gi|385802781|ref|YP_005839181.1| - 2.4e-14 52.6 0.0 5.7e-14 51.4 0.0 1.6 1 1 1 2 2 2 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|385802781|ref|YP_005839181.1| - 9.2e-08 32.2 0.0 2.8e-06 27.4 0.0 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.11 gi|385802781|ref|YP_005839181.1| - 0.00053 20.1 2.3 0.00062 19.9 2.3 1.1 1 0 0 1 1 1 1 GvpH PIH1_CS PF18201.1 gi|385802781|ref|YP_005839181.1| - 0.065 13.6 0.0 0.082 13.3 0.0 1.2 1 0 0 1 1 1 0 PIH1 CS-like domain Gp_dh_C PF02800.20 gi|385802782|ref|YP_005839182.1| - 3.1e-56 189.4 0.0 4.2e-56 188.9 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.24 gi|385802782|ref|YP_005839182.1| - 1.5e-29 102.3 0.0 2.5e-29 101.6 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|385802782|ref|YP_005839182.1| - 0.0016 18.5 0.1 0.0038 17.4 0.1 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus PriA_3primeBD PF17764.1 gi|385802782|ref|YP_005839182.1| - 0.039 13.8 0.0 4.9 7.1 0.0 2.9 3 0 0 3 3 3 0 3′ DNA-binding domain (3′BD) NAD_binding_3 PF03447.16 gi|385802782|ref|YP_005839182.1| - 0.048 14.3 0.0 0.17 12.5 0.0 1.8 1 1 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain PGK PF00162.19 gi|385802783|ref|YP_005839183.1| - 3e-100 335.8 0.6 3.6e-100 335.6 0.6 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Lum_binding PF00677.17 gi|385802784|ref|YP_005839184.1| - 2.7e-46 155.5 1.5 2.9e-23 81.6 0.1 2.0 2 0 0 2 2 2 2 Lumazine binding domain PrsW-protease PF13367.6 gi|385802785|ref|YP_005839185.1| - 5.9e-49 166.2 11.2 5.9e-49 166.2 11.2 1.9 2 0 0 2 2 2 1 PrsW family intramembrane metalloprotease Rab5ip PF07019.12 gi|385802785|ref|YP_005839185.1| - 0.035 14.7 0.4 0.035 14.7 0.4 3.1 3 1 0 3 3 3 0 Rab5-interacting protein (Rab5ip) DUF4006 PF13179.6 gi|385802785|ref|YP_005839185.1| - 2.1 8.3 0.0 2.1 8.3 0.0 2.8 3 0 0 3 3 3 0 Family of unknown function (DUF4006) DUF4400 PF14348.6 gi|385802785|ref|YP_005839185.1| - 2.5 7.6 6.6 2.3 7.7 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4400) DUF402 PF04167.13 gi|385802786|ref|YP_005839186.1| - 6e-17 61.6 1.3 1.6e-16 60.2 1.3 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF402) 4HBT PF03061.22 gi|385802787|ref|YP_005839187.1| - 8.2e-17 61.3 0.0 1.2e-16 60.8 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily Rick_17kDa_Anti PF05433.15 gi|385802789|ref|YP_005839189.1| - 0.00072 19.4 3.1 0.33 10.8 0.3 2.2 2 0 0 2 2 2 2 Glycine zipper 2TM domain Gly-zipper_Omp PF13488.6 gi|385802789|ref|YP_005839189.1| - 0.0014 18.6 7.7 0.0025 17.8 7.7 1.3 1 0 0 1 1 1 1 Glycine zipper Gly-zipper_YMGG PF13441.6 gi|385802789|ref|YP_005839189.1| - 0.0037 17.0 5.2 0.0055 16.4 5.2 1.3 1 0 0 1 1 1 1 YMGG-like Gly-zipper Gly-zipper_OmpA PF13436.6 gi|385802789|ref|YP_005839189.1| - 0.0071 16.1 7.2 0.01 15.6 7.2 1.2 1 0 0 1 1 1 1 Glycine-zipper domain MccV PF17508.2 gi|385802789|ref|YP_005839189.1| - 0.026 15.1 0.6 0.032 14.8 0.6 1.1 1 0 0 1 1 1 0 Microcin V bacteriocin DUF3482 PF11981.8 gi|385802789|ref|YP_005839189.1| - 0.093 12.1 2.1 0.1 12.0 2.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) Abhydrolase_9_N PF15420.6 gi|385802789|ref|YP_005839189.1| - 0.12 12.4 0.0 0.15 12.1 0.0 1.1 1 0 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus TraT PF05818.12 gi|385802789|ref|YP_005839189.1| - 0.14 11.8 1.2 0.18 11.5 1.2 1.1 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein Romo1 PF10247.9 gi|385802789|ref|YP_005839189.1| - 1.1 9.7 5.5 7.2 7.1 5.5 1.9 1 1 0 1 1 1 0 Reactive mitochondrial oxygen species modulator 1 PT-VENN PF04829.13 gi|385802789|ref|YP_005839189.1| - 1.4 9.1 5.0 0.58 10.3 0.6 2.0 2 0 0 2 2 2 0 Pre-toxin domain with VENN motif CbiA PF01656.23 gi|385802791|ref|YP_005839191.1| - 9.1e-16 58.1 0.1 1.3e-15 57.6 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|385802791|ref|YP_005839191.1| - 1.4e-11 44.7 0.1 2e-11 44.1 0.1 1.2 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|385802791|ref|YP_005839191.1| - 8e-10 38.6 1.9 2.1e-06 27.4 0.5 2.5 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|385802791|ref|YP_005839191.1| - 6.7e-07 29.0 0.0 0.00019 21.0 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|385802791|ref|YP_005839191.1| - 0.00015 21.4 0.1 0.00027 20.5 0.0 1.4 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|385802791|ref|YP_005839191.1| - 0.0034 16.6 0.5 0.01 15.0 0.6 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|385802791|ref|YP_005839191.1| - 0.0043 16.4 2.2 0.021 14.1 2.2 1.9 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|385802791|ref|YP_005839191.1| - 0.0095 15.8 0.3 0.085 12.7 0.0 2.3 2 1 0 2 2 2 1 AAA domain VirC1 PF07015.11 gi|385802791|ref|YP_005839191.1| - 0.018 14.3 0.5 0.031 13.6 0.5 1.3 1 0 0 1 1 1 0 VirC1 protein AAA_24 PF13479.6 gi|385802791|ref|YP_005839191.1| - 0.041 13.6 0.1 0.076 12.7 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|385802791|ref|YP_005839191.1| - 0.086 12.4 3.4 0.074 12.6 1.9 1.7 2 1 0 2 2 2 0 AAA domain PIF1 PF05970.14 gi|385802791|ref|YP_005839191.1| - 0.11 11.7 0.1 0.15 11.2 0.1 1.2 1 0 0 1 1 1 0 PIF1-like helicase GATase_3 PF07685.14 gi|385802792|ref|YP_005839192.1| - 1.6e-37 129.0 0.0 1e-36 126.4 0.0 2.2 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|385802792|ref|YP_005839192.1| - 2.1e-20 73.1 0.0 4.6e-20 72.0 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|385802792|ref|YP_005839192.1| - 5.9e-18 65.4 0.4 9e-12 45.2 0.1 2.6 1 1 1 2 2 2 2 AAA domain DUF1611 PF07755.11 gi|385802792|ref|YP_005839192.1| - 0.0055 16.0 0.3 2.3 7.5 0.0 3.1 2 1 0 2 2 2 2 Domain of unknown function (DUF1611_C) P-loop domain GATase PF00117.28 gi|385802792|ref|YP_005839192.1| - 0.086 12.6 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Glutamine amidotransferase class-I CobA_CobO_BtuR PF02572.15 gi|385802793|ref|YP_005839193.1| - 9.5e-50 169.2 0.0 1.2e-49 168.9 0.0 1.1 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CbiA PF01656.23 gi|385802793|ref|YP_005839193.1| - 0.025 14.6 0.0 0.038 14.1 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain CbiZ PF01955.18 gi|385802794|ref|YP_005839194.1| - 1.4e-31 110.1 11.2 4.3e-30 105.3 11.2 2.3 1 1 0 1 1 1 1 Adenosylcobinamide amidohydrolase Aminotran_1_2 PF00155.21 gi|385802795|ref|YP_005839195.1| - 1.1e-29 103.8 0.0 1.2e-29 103.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|385802795|ref|YP_005839195.1| - 0.0059 16.0 0.9 0.032 13.5 0.2 1.9 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family NeA_P2 PF12312.8 gi|385802795|ref|YP_005839195.1| - 0.014 14.8 0.1 0.023 14.1 0.1 1.3 1 0 0 1 1 1 0 Nepovirus subgroup A polyprotein TetR_N PF00440.23 gi|385802796|ref|YP_005839196.1| - 3.9 7.3 4.9 3.2 7.6 0.1 3.1 3 0 0 3 3 3 0 Bacterial regulatory proteins, tetR family NTP_transf_3 PF12804.7 gi|385802797|ref|YP_005839197.1| - 1.1e-10 42.1 0.1 1.1e-10 42.1 0.1 1.7 2 1 0 2 2 2 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|385802797|ref|YP_005839197.1| - 0.0067 16.4 0.0 0.013 15.4 0.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase CofC PF01983.16 gi|385802797|ref|YP_005839197.1| - 0.019 14.1 0.0 0.029 13.5 0.0 1.5 1 1 0 1 1 1 0 Guanylyl transferase CofC like NTP_transferase PF00483.23 gi|385802797|ref|YP_005839197.1| - 0.028 14.0 1.2 0.16 11.6 0.0 2.0 2 0 0 2 2 2 0 Nucleotidyl transferase CobS PF02654.15 gi|385802798|ref|YP_005839198.1| - 1.3e-33 116.9 16.0 1.5e-33 116.8 16.0 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase CobD_Cbib PF03186.13 gi|385802799|ref|YP_005839199.1| - 2.4e-71 240.2 8.6 3.1e-71 239.8 8.6 1.2 1 0 0 1 1 1 1 CobD/Cbib protein HAD_2 PF13419.6 gi|385802800|ref|YP_005839200.1| - 4.6e-10 39.9 0.0 6.1e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|385802800|ref|YP_005839200.1| - 1.2e-06 29.0 0.0 2.4e-06 28.0 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|385802800|ref|YP_005839200.1| - 0.00011 22.1 0.0 0.00028 20.9 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like zinc_ribbon_2 PF13240.6 gi|385802801|ref|YP_005839201.1| - 3.3e-09 36.2 14.4 9.6e-05 22.0 5.6 2.5 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|385802801|ref|YP_005839201.1| - 1.5e-07 31.3 8.5 3e-07 30.3 8.5 1.5 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|385802801|ref|YP_005839201.1| - 1.1e-06 29.3 7.1 0.00087 20.0 0.4 2.3 2 0 0 2 2 2 2 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|385802801|ref|YP_005839201.1| - 3.8e-06 26.1 14.7 0.0095 15.3 1.9 3.0 1 1 2 3 3 3 3 zinc-ribbon domain RHH_1 PF01402.21 gi|385802801|ref|YP_005839201.1| - 0.0002 21.2 0.1 0.022 14.7 0.0 2.5 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family zinc-ribbons_6 PF07191.12 gi|385802801|ref|YP_005839201.1| - 0.0087 16.0 7.8 0.34 10.9 4.9 2.2 1 1 1 2 2 2 2 zinc-ribbons PolC_DP2 PF03833.13 gi|385802801|ref|YP_005839201.1| - 0.011 13.6 4.7 0.015 13.3 4.7 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Zn_Tnp_IS91 PF14319.6 gi|385802801|ref|YP_005839201.1| - 0.019 15.0 5.0 0.039 14.0 5.0 1.5 1 0 0 1 1 1 0 Transposase zinc-binding domain NOB1_Zn_bind PF08772.11 gi|385802801|ref|YP_005839201.1| - 0.025 14.7 10.5 0.26 11.5 3.7 2.8 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Zn-ribbon_8 PF09723.10 gi|385802801|ref|YP_005839201.1| - 0.043 13.9 11.6 0.78 9.9 2.6 3.4 2 1 1 3 3 3 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|385802801|ref|YP_005839201.1| - 0.044 13.7 10.8 2.7 8.0 2.2 3.6 3 1 0 3 3 3 0 Nudix N-terminal VapB_antitoxin PF09957.9 gi|385802801|ref|YP_005839201.1| - 0.096 12.6 4.2 0.18 11.8 0.0 2.5 3 0 0 3 3 2 0 Bacterial antitoxin of type II TA system, VapB Zn_Tnp_IS1595 PF12760.7 gi|385802801|ref|YP_005839201.1| - 0.1 12.6 6.9 3.2 7.8 0.9 3.2 3 0 0 3 3 3 0 Transposase zinc-ribbon domain zf-C3HC4_3 PF13920.6 gi|385802801|ref|YP_005839201.1| - 0.11 12.4 6.6 4.4 7.3 6.6 2.2 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-NADH-PPase PF09297.11 gi|385802801|ref|YP_005839201.1| - 0.12 12.0 9.5 0.49 10.1 0.4 2.9 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Ribosomal_L32p PF01783.23 gi|385802801|ref|YP_005839201.1| - 0.24 11.7 9.7 0.59 10.4 5.7 3.0 1 1 1 2 2 2 0 Ribosomal L32p protein family OrfB_Zn_ribbon PF07282.11 gi|385802801|ref|YP_005839201.1| - 0.84 9.6 11.4 0.62 10.0 4.6 2.9 1 1 1 2 2 2 0 Putative transposase DNA-binding domain NRDD PF13597.6 gi|385802801|ref|YP_005839201.1| - 0.89 8.2 7.5 0.41 9.4 3.0 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase Cys_rich_KTR PF14205.6 gi|385802801|ref|YP_005839201.1| - 0.9 9.4 7.1 3.1 7.7 0.1 2.6 3 0 0 3 3 2 0 Cysteine-rich KTR Cript PF10235.9 gi|385802801|ref|YP_005839201.1| - 0.96 10.1 9.2 7.5 7.2 5.6 2.9 1 1 1 2 2 2 0 Microtubule-associated protein CRIPT DUF1272 PF06906.11 gi|385802801|ref|YP_005839201.1| - 1.8 8.7 9.1 0.47 10.6 2.5 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) Auto_anti-p27 PF06677.12 gi|385802801|ref|YP_005839201.1| - 2 8.7 4.9 3.6 7.8 1.5 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF1610 PF07754.11 gi|385802801|ref|YP_005839201.1| - 2.3 8.3 12.4 2.7 8.0 5.9 3.2 2 1 0 2 2 2 0 Domain of unknown function (DUF1610) zf-RING_7 PF02591.15 gi|385802801|ref|YP_005839201.1| - 2.3 8.5 14.1 3.5 7.9 1.5 3.3 2 1 0 2 2 2 0 C4-type zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|385802801|ref|YP_005839201.1| - 3 8.0 7.3 12 6.1 0.2 3.2 3 0 0 3 3 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ACC PF17848.1 gi|385802801|ref|YP_005839201.1| - 3.6 7.7 8.1 45 4.2 0.1 3.5 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain Sgf11 PF08209.11 gi|385802801|ref|YP_005839201.1| - 3.8 7.2 9.6 21 4.8 0.1 3.3 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) DUF35_N PF12172.8 gi|385802801|ref|YP_005839201.1| - 4.6 7.2 8.4 11 6.0 1.5 2.9 2 1 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C4_Topoisom PF01396.19 gi|385802801|ref|YP_005839201.1| - 7 6.5 9.3 24 4.8 0.1 3.4 4 0 0 4 4 3 0 Topoisomerase DNA binding C4 zinc finger zf-ISL3 PF14690.6 gi|385802801|ref|YP_005839201.1| - 9.5 7.0 9.1 9.6 7.0 0.3 2.9 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RHH_1 PF01402.21 gi|385802802|ref|YP_005839202.1| - 2.5e-08 33.5 0.1 3.7e-08 33.0 0.1 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|385802802|ref|YP_005839202.1| - 2.7e-05 24.3 0.0 3e-05 24.2 0.0 1.0 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family GIT1_C PF12205.8 gi|385802802|ref|YP_005839202.1| - 0.022 14.9 0.3 0.023 14.8 0.3 1.1 1 0 0 1 1 1 0 G protein-coupled receptor kinase-interacting protein 1 C term PSK_trans_fac PF07704.11 gi|385802802|ref|YP_005839202.1| - 0.056 14.2 0.2 0.066 14.0 0.2 1.3 1 1 0 1 1 1 0 Rv0623-like transcription factor Tubulin PF00091.25 gi|385802803|ref|YP_005839203.1| - 5.7e-37 127.8 3.5 1.7e-36 126.3 3.5 1.8 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|385802803|ref|YP_005839203.1| - 3.1e-35 120.3 0.7 3.1e-35 120.3 0.7 2.8 2 1 1 3 3 3 1 FtsZ family, C-terminal domain ZT_dimer PF16916.5 gi|385802803|ref|YP_005839203.1| - 0.071 13.3 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 Dimerisation domain of Zinc Transporter Methyltransf_15 PF09445.10 gi|385802803|ref|YP_005839203.1| - 0.19 11.3 0.1 0.33 10.5 0.1 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_11 PF08241.12 gi|385802804|ref|YP_005839204.1| - 2.1e-13 50.7 0.0 5.4e-13 49.4 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|385802804|ref|YP_005839204.1| - 2.2e-13 50.7 0.1 1.3e-12 48.3 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|385802804|ref|YP_005839204.1| - 2.3e-12 47.0 0.0 3.1e-12 46.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|385802804|ref|YP_005839204.1| - 2.3e-10 40.5 0.0 3e-10 40.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|385802804|ref|YP_005839204.1| - 4.6e-07 29.4 0.0 6.9e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|385802804|ref|YP_005839204.1| - 6.8e-07 30.0 0.1 2.1e-06 28.4 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|385802804|ref|YP_005839204.1| - 0.003 17.1 0.0 0.0064 16.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|385802804|ref|YP_005839204.1| - 0.009 15.8 0.0 0.039 13.7 0.0 1.9 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|385802804|ref|YP_005839204.1| - 0.015 14.9 0.0 0.026 14.1 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW FtsJ PF01728.19 gi|385802804|ref|YP_005839204.1| - 0.019 15.0 0.0 0.027 14.6 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_32 PF13679.6 gi|385802804|ref|YP_005839204.1| - 0.023 14.7 0.0 0.053 13.5 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 gi|385802804|ref|YP_005839204.1| - 0.1 12.0 0.2 0.24 10.8 0.0 1.6 1 1 1 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.20 gi|385802804|ref|YP_005839204.1| - 0.13 11.3 0.0 0.21 10.6 0.0 1.3 1 1 0 1 1 1 0 Ribosomal RNA adenine dimethylase AP_endonuc_2 PF01261.24 gi|385802805|ref|YP_005839205.1| - 4.3e-26 91.7 0.2 6.5e-26 91.1 0.2 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Aldedh PF00171.22 gi|385802806|ref|YP_005839206.1| - 9e-142 472.8 0.0 1e-141 472.7 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family RIO1 PF01163.22 gi|385802807|ref|YP_005839207.1| - 1.9e-45 154.8 0.4 2.8e-45 154.3 0.4 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|385802807|ref|YP_005839207.1| - 1.8e-26 92.1 0.0 4.1e-26 91.0 0.0 1.6 1 0 0 1 1 1 1 Rio2, N-terminal ABC_tran PF00005.27 gi|385802808|ref|YP_005839208.1| - 3.1e-29 102.2 0.0 3.2e-28 99.0 0.0 2.1 2 0 0 2 2 2 1 ABC transporter TOBE PF03459.17 gi|385802808|ref|YP_005839208.1| - 7.4e-08 32.6 2.3 4.4e-07 30.1 0.2 2.4 2 0 0 2 2 2 1 TOBE domain TOBE_2 PF08402.10 gi|385802808|ref|YP_005839208.1| - 8.3e-06 25.9 0.3 4.1e-05 23.6 0.1 2.3 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|385802808|ref|YP_005839208.1| - 0.00013 21.9 1.7 0.11 12.3 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385802808|ref|YP_005839208.1| - 0.00017 21.1 0.0 0.52 9.7 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RNase_II_C_S1 PF18614.1 gi|385802808|ref|YP_005839208.1| - 0.0002 21.2 2.4 0.66 10.0 0.0 3.5 4 0 0 4 4 4 2 RNase II-type exonuclease C-terminal S1 domain AAA_16 PF13191.6 gi|385802808|ref|YP_005839208.1| - 0.00024 21.5 0.1 0.00048 20.6 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|385802808|ref|YP_005839208.1| - 0.00086 19.0 0.2 0.0029 17.3 0.1 1.9 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|385802808|ref|YP_005839208.1| - 0.0038 17.4 0.3 0.023 14.8 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|385802808|ref|YP_005839208.1| - 0.0049 16.6 0.0 0.063 13.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|385802808|ref|YP_005839208.1| - 0.023 14.6 0.0 0.053 13.4 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 gi|385802808|ref|YP_005839208.1| - 0.067 13.7 0.0 0.12 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|385802808|ref|YP_005839208.1| - 0.09 13.0 0.2 0.22 11.8 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|385802808|ref|YP_005839208.1| - 0.1 12.2 0.0 0.23 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|385802808|ref|YP_005839208.1| - 0.1 13.0 0.7 0.25 11.7 0.0 2.0 2 1 0 2 2 2 0 AAA domain TniB PF05621.11 gi|385802808|ref|YP_005839208.1| - 0.1 12.0 0.0 8.2 5.8 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein Rad17 PF03215.15 gi|385802808|ref|YP_005839208.1| - 0.12 12.3 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_24 PF13479.6 gi|385802808|ref|YP_005839208.1| - 0.16 11.7 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|385802808|ref|YP_005839208.1| - 0.16 11.1 0.0 0.28 10.4 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain BPD_transp_1 PF00528.22 gi|385802809|ref|YP_005839209.1| - 3.9e-19 69.1 13.6 3.9e-19 69.1 13.6 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4212 PF13937.6 gi|385802809|ref|YP_005839209.1| - 3.5 8.1 7.0 0.23 11.8 0.8 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4212) SBP_bac_11 PF13531.6 gi|385802810|ref|YP_005839210.1| - 1.4e-20 74.0 0.3 1.9e-20 73.6 0.3 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Ribosomal_L15e PF00827.17 gi|385802811|ref|YP_005839211.1| - 7.4e-80 267.2 4.4 8.4e-80 267.0 4.4 1.0 1 0 0 1 1 1 1 Ribosomal L15 ThiF PF00899.21 gi|385802812|ref|YP_005839212.1| - 5.5e-66 222.4 0.0 7.2e-66 222.0 0.0 1.0 1 0 0 1 1 1 1 ThiF family PglD_N PF17836.1 gi|385802812|ref|YP_005839212.1| - 0.00049 20.7 0.4 0.00092 19.8 0.4 1.5 1 0 0 1 1 1 1 PglD N-terminal domain Shikimate_DH PF01488.20 gi|385802812|ref|YP_005839212.1| - 0.0033 17.5 0.0 0.0047 17.0 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|385802812|ref|YP_005839212.1| - 0.0055 17.0 1.0 0.036 14.3 1.0 2.0 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|385802812|ref|YP_005839212.1| - 0.041 13.5 0.0 0.06 13.0 0.0 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|385802812|ref|YP_005839212.1| - 0.091 13.2 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding UbiA PF01040.18 gi|385802813|ref|YP_005839213.1| - 6.2e-26 91.2 15.2 8.2e-26 90.8 15.2 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF1643 PF07799.12 gi|385802814|ref|YP_005839214.1| - 2.5e-39 134.5 0.0 3e-39 134.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1643) DUF134 PF02001.16 gi|385802816|ref|YP_005839216.1| - 1.3e-05 25.7 0.0 1.4e-05 25.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.12 gi|385802816|ref|YP_005839216.1| - 0.00082 19.0 0.0 0.0011 18.6 0.0 1.1 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_40 PF14493.6 gi|385802816|ref|YP_005839216.1| - 0.016 15.6 0.1 0.018 15.5 0.1 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain UPF0175 PF03683.13 gi|385802816|ref|YP_005839216.1| - 0.021 14.5 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0175) Sigma70_r4 PF04545.16 gi|385802816|ref|YP_005839216.1| - 0.061 12.9 0.0 0.079 12.5 0.0 1.2 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_10 PF04967.12 gi|385802816|ref|YP_005839216.1| - 0.15 11.9 0.0 0.28 11.0 0.0 1.5 2 0 0 2 2 2 0 HTH DNA binding domain SnoaL_2 PF12680.7 gi|385802817|ref|YP_005839217.1| - 2e-10 41.2 0.2 2.3e-10 41.0 0.2 1.0 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|385802817|ref|YP_005839217.1| - 0.00044 20.6 0.1 0.00052 20.4 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL PF07366.12 gi|385802817|ref|YP_005839217.1| - 0.00083 19.2 0.1 0.00097 18.9 0.1 1.1 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase DUF4904 PF16247.5 gi|385802817|ref|YP_005839217.1| - 0.022 14.6 0.2 0.029 14.2 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4904) SnoaL_3 PF13474.6 gi|385802817|ref|YP_005839217.1| - 0.024 14.9 0.0 0.03 14.6 0.0 1.2 1 0 0 1 1 1 0 SnoaL-like domain CBS PF00571.28 gi|385802818|ref|YP_005839218.1| - 6.9e-25 87.3 0.6 3.1e-11 43.5 0.1 2.2 2 0 0 2 2 2 2 CBS domain ABC_tran PF00005.27 gi|385802819|ref|YP_005839219.1| - 4.1e-37 127.8 0.0 1e-36 126.5 0.0 1.7 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|385802819|ref|YP_005839219.1| - 2.5e-13 50.0 0.0 7.2e-13 48.5 0.0 1.8 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|385802819|ref|YP_005839219.1| - 2.5e-05 24.3 1.4 0.065 13.0 0.2 2.4 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385802819|ref|YP_005839219.1| - 0.0017 17.8 2.2 0.14 11.5 0.1 2.5 2 1 1 3 3 3 2 RecF/RecN/SMC N terminal domain TOBE PF03459.17 gi|385802819|ref|YP_005839219.1| - 0.0049 17.1 0.1 0.098 13.0 0.1 2.5 2 0 0 2 2 2 1 TOBE domain Rad17 PF03215.15 gi|385802819|ref|YP_005839219.1| - 0.01 15.7 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA PF00004.29 gi|385802819|ref|YP_005839219.1| - 0.017 15.6 0.2 0.097 13.1 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|385802819|ref|YP_005839219.1| - 0.02 15.3 0.3 0.04 14.3 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 gi|385802819|ref|YP_005839219.1| - 0.022 15.0 1.5 0.088 13.1 1.5 2.0 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|385802819|ref|YP_005839219.1| - 0.031 14.2 0.0 0.071 13.0 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_27 PF13514.6 gi|385802819|ref|YP_005839219.1| - 0.041 13.5 0.0 0.084 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|385802819|ref|YP_005839219.1| - 0.056 13.2 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP-synt_ab PF00006.25 gi|385802819|ref|YP_005839219.1| - 0.13 12.0 0.0 0.13 12.0 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_23 PF13476.6 gi|385802819|ref|YP_005839219.1| - 0.22 12.0 1.7 0.33 11.4 0.0 2.0 2 1 1 3 3 3 0 AAA domain BPD_transp_1 PF00528.22 gi|385802820|ref|YP_005839220.1| - 2.1e-18 66.7 24.0 2.1e-18 66.7 24.0 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|385802821|ref|YP_005839221.1| - 8.2e-14 51.7 18.7 8.2e-14 51.7 18.7 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|385802822|ref|YP_005839222.1| - 8.1e-26 91.5 0.0 1.3e-25 90.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|385802822|ref|YP_005839222.1| - 6.1e-18 65.1 0.1 8.3e-18 64.7 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|385802822|ref|YP_005839222.1| - 7.6e-05 22.8 0.1 0.00092 19.2 0.1 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|385802822|ref|YP_005839222.1| - 0.0001 22.0 1.0 0.00018 21.2 1.0 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_11 PF13531.6 gi|385802822|ref|YP_005839222.1| - 0.022 14.5 0.0 0.055 13.2 0.0 1.7 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein UCR_Fe-S_N PF10399.9 gi|385802822|ref|YP_005839222.1| - 0.1 11.9 0.2 0.22 10.9 0.2 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal tRNA_anti-codon PF01336.25 gi|385802823|ref|YP_005839223.1| - 2.2e-29 101.2 8.9 7.7e-12 45.0 0.1 4.2 4 0 0 4 4 4 3 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|385802823|ref|YP_005839223.1| - 2.2e-10 40.6 0.2 0.00049 19.9 0.0 3.4 3 0 0 3 3 3 3 Cell division control protein 24, OB domain 3 DUF4539 PF15072.6 gi|385802823|ref|YP_005839223.1| - 0.0021 18.1 1.0 0.16 12.0 0.0 3.3 3 0 0 3 3 3 1 Domain of unknown function (DUF4539) Rep_fac-A_C PF08646.10 gi|385802823|ref|YP_005839223.1| - 0.039 13.7 0.1 2.1 8.1 0.0 2.9 3 0 0 3 3 3 0 Replication factor-A C terminal domain Exo84_C PF16528.5 gi|385802823|ref|YP_005839223.1| - 0.066 13.0 0.4 0.11 12.3 0.4 1.3 1 0 0 1 1 1 0 Exocyst component 84 C-terminal DUF5521 PF17659.1 gi|385802823|ref|YP_005839223.1| - 0.12 10.2 0.0 0.12 10.2 0.0 1.6 2 0 0 2 2 2 0 Family of unknown function (DUF5521) CBFD_NFYB_HMF PF00808.23 gi|385802824|ref|YP_005839224.1| - 1.5e-23 82.8 0.5 5.3e-14 52.2 0.3 2.0 2 0 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|385802824|ref|YP_005839224.1| - 3.3e-12 46.9 3.0 3.9e-11 43.4 0.7 2.0 1 1 1 2 2 2 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|385802824|ref|YP_005839224.1| - 4e-05 23.7 0.0 7.4e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold CENP-S PF15630.6 gi|385802824|ref|YP_005839224.1| - 0.0011 19.3 0.1 0.0018 18.6 0.1 1.3 1 0 0 1 1 1 1 CENP-S protein TFIID_20kDa PF03847.13 gi|385802824|ref|YP_005839224.1| - 0.0024 18.3 0.2 0.0039 17.6 0.2 1.3 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A Peptidase_M78 PF06114.13 gi|385802824|ref|YP_005839224.1| - 0.023 14.6 0.3 0.16 11.9 0.0 1.9 2 0 0 2 2 2 0 IrrE N-terminal-like domain TFIID-31kDa PF02291.15 gi|385802824|ref|YP_005839224.1| - 0.078 13.1 0.4 0.15 12.1 0.4 1.5 1 0 0 1 1 1 0 Transcription initiation factor IID, 31kD subunit Herpes_UL35 PF04496.12 gi|385802824|ref|YP_005839224.1| - 0.85 9.9 3.9 1.3 9.3 0.6 2.0 1 1 0 2 2 2 0 Herpesvirus UL35 family Hist_deacetyl PF00850.19 gi|385802825|ref|YP_005839225.1| - 6e-81 272.3 0.0 9e-81 271.7 0.0 1.3 1 1 0 1 1 1 1 Histone deacetylase domain tRNA_NucTransf2 PF09249.11 gi|385802826|ref|YP_005839226.1| - 6.6e-45 152.0 0.0 1.2e-44 151.2 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|385802826|ref|YP_005839226.1| - 4.5e-14 52.5 0.0 8.7e-14 51.6 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|385802826|ref|YP_005839226.1| - 0.00034 20.8 0.0 0.0084 16.3 0.0 2.8 2 1 0 2 2 2 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain YdjM PF04307.14 gi|385802827|ref|YP_005839227.1| - 4.5e-11 42.4 11.5 9e-11 41.4 11.5 1.5 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Deltameth_res PF16020.5 gi|385802827|ref|YP_005839227.1| - 0.16 11.8 0.0 0.16 11.8 0.0 3.1 4 0 0 4 4 4 0 Deltamethrin resistance NMT1_3 PF16868.5 gi|385802830|ref|YP_005839230.1| - 4e-67 226.7 4.6 4.9e-67 226.4 4.6 1.0 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|385802830|ref|YP_005839230.1| - 4.3e-10 39.9 2.0 1.6e-09 38.1 0.3 2.2 2 0 0 2 2 2 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|385802830|ref|YP_005839230.1| - 1.7e-08 34.4 1.1 2.9e-08 33.6 1.1 1.4 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 gi|385802830|ref|YP_005839230.1| - 0.0053 16.2 0.1 0.011 15.2 0.1 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1_2 PF13379.6 gi|385802830|ref|YP_005839230.1| - 0.0055 16.4 0.5 0.11 12.1 0.1 2.4 1 1 1 2 2 2 1 NMT1-like family DUF1850 PF08905.11 gi|385802831|ref|YP_005839231.1| - 2.4e-25 88.7 0.1 3.5e-25 88.1 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) DctM PF06808.12 gi|385802832|ref|YP_005839232.1| - 4.7e-78 262.9 51.7 5.6e-54 183.5 22.4 3.6 3 1 0 4 4 4 2 Tripartite ATP-independent periplasmic transporter, DctM component FAD_binding_7 PF03441.14 gi|385802833|ref|YP_005839233.1| - 7.2e-59 198.7 3.3 1.1e-58 198.0 3.3 1.3 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|385802833|ref|YP_005839233.1| - 1.4e-15 57.7 0.0 1.8e-11 44.3 0.0 2.7 3 0 0 3 3 3 2 DNA photolyase DUF2070 PF09843.9 gi|385802835|ref|YP_005839235.1| - 0.42 8.8 9.3 0.51 8.6 9.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) UPF0047 PF01894.17 gi|385802836|ref|YP_005839236.1| - 1.2e-36 125.4 0.2 1.4e-36 125.1 0.2 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 AAA_17 PF13207.6 gi|385802837|ref|YP_005839237.1| - 1e-23 84.3 0.0 1.3e-23 83.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|385802837|ref|YP_005839237.1| - 0.0073 16.7 0.1 0.0097 16.3 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|385802837|ref|YP_005839237.1| - 0.017 15.3 0.7 0.036 14.2 0.6 1.6 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|385802837|ref|YP_005839237.1| - 0.03 14.9 0.0 0.047 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|385802837|ref|YP_005839237.1| - 0.04 14.2 0.0 0.054 13.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain Form_Nir_trans PF01226.17 gi|385802839|ref|YP_005839239.1| - 8.6e-43 146.4 15.1 1.1e-42 146.0 15.1 1.1 1 0 0 1 1 1 1 Formate/nitrite transporter Usp PF00582.26 gi|385802839|ref|YP_005839239.1| - 5.1e-16 59.5 5.7 4.7e-09 36.9 0.0 3.2 2 1 0 2 2 2 2 Universal stress protein family PrgI PF12666.7 gi|385802839|ref|YP_005839239.1| - 0.04 14.6 1.2 0.04 14.6 1.2 2.7 2 1 0 2 2 2 0 PrgI family protein PSD4 PF07631.11 gi|385802839|ref|YP_005839239.1| - 0.11 13.0 0.0 0.38 11.3 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1592) DZR PF12773.7 gi|385802840|ref|YP_005839240.1| - 0.00011 22.1 0.8 0.00018 21.5 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|385802840|ref|YP_005839240.1| - 0.0017 18.0 0.4 0.0026 17.4 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|385802840|ref|YP_005839240.1| - 0.0092 16.7 0.0 0.012 16.4 0.0 1.2 1 0 0 1 1 1 1 zinc-ribbon family UPF0547 PF10571.9 gi|385802840|ref|YP_005839240.1| - 0.03 14.4 0.4 0.03 14.4 0.4 1.8 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 MerC PF03203.14 gi|385802840|ref|YP_005839240.1| - 0.039 14.4 2.0 0.053 14.0 2.0 1.1 1 0 0 1 1 1 0 MerC mercury resistance protein TM2 PF05154.16 gi|385802840|ref|YP_005839240.1| - 0.04 14.3 0.6 0.056 13.8 0.6 1.3 1 0 0 1 1 1 0 TM2 domain TerY_C PF15616.6 gi|385802840|ref|YP_005839240.1| - 0.11 12.6 0.5 1.6 8.8 0.5 2.0 1 1 0 1 1 1 0 TerY-C metal binding domain zf-ribbon_3 PF13248.6 gi|385802840|ref|YP_005839240.1| - 0.17 11.4 2.6 0.3 10.5 2.6 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Rad50_zn_hook PF04423.14 gi|385802840|ref|YP_005839240.1| - 0.64 9.9 3.5 2.7 7.9 0.6 2.1 2 0 0 2 2 2 0 Rad50 zinc hook motif CBM9_1 PF06452.11 gi|385802841|ref|YP_005839241.1| - 0.026 14.4 2.1 0.038 13.9 2.1 1.3 1 0 0 1 1 1 0 Carbohydrate family 9 binding domain-like YwhD PF08741.10 gi|385802841|ref|YP_005839241.1| - 0.1 12.3 0.1 0.17 11.5 0.1 1.3 1 0 0 1 1 1 0 YwhD family PsiE PF06146.12 gi|385802842|ref|YP_005839242.1| - 4.1e-12 46.3 2.9 8.3e-12 45.3 2.9 1.5 1 0 0 1 1 1 1 Phosphate-starvation-inducible E DUF2339 PF10101.9 gi|385802842|ref|YP_005839242.1| - 0.22 10.1 5.5 0.057 12.0 1.2 1.8 1 1 0 2 2 2 0 Predicted membrane protein (DUF2339) DUF4233 PF14017.6 gi|385802842|ref|YP_005839242.1| - 0.39 11.1 5.2 0.54 10.6 0.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4233) TrbL PF04610.14 gi|385802842|ref|YP_005839242.1| - 0.53 10.0 8.4 0.11 12.2 2.2 2.0 1 1 1 2 2 2 0 TrbL/VirB6 plasmid conjugal transfer protein PfkB PF00294.24 gi|385802843|ref|YP_005839243.1| - 9.9e-45 153.1 0.4 1.2e-44 152.8 0.4 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DUF4434 PF14488.6 gi|385802843|ref|YP_005839243.1| - 0.014 15.4 0.0 0.029 14.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4434) DNA_mis_repair PF01119.19 gi|385802844|ref|YP_005839244.1| - 2.3e-37 127.3 0.0 4.9e-37 126.2 0.0 1.6 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain MutL_C PF08676.11 gi|385802844|ref|YP_005839244.1| - 1e-36 125.9 0.0 1.7e-36 125.2 0.0 1.4 1 0 0 1 1 1 1 MutL C terminal dimerisation domain HATPase_c_3 PF13589.6 gi|385802844|ref|YP_005839244.1| - 6.6e-13 48.7 0.2 6.6e-13 48.7 0.2 2.5 2 1 1 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|385802844|ref|YP_005839244.1| - 2.5e-07 31.2 0.8 2.1e-06 28.2 0.3 2.7 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YokU PF14122.6 gi|385802844|ref|YP_005839244.1| - 0.17 11.9 0.0 0.46 10.5 0.0 1.7 1 0 0 1 1 1 0 YokU-like protein, putative antitoxin Macoilin PF09726.9 gi|385802844|ref|YP_005839244.1| - 4.1 5.9 18.9 5.6 5.4 18.9 1.1 1 0 0 1 1 1 0 Macoilin family NUDIX PF00293.28 gi|385802845|ref|YP_005839245.1| - 1e-13 51.5 0.1 1.5e-13 51.0 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain Trypan_PARP PF05887.11 gi|385802845|ref|YP_005839245.1| - 0.03 14.3 0.9 0.041 13.9 0.9 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) NUDIX_2 PF13869.6 gi|385802845|ref|YP_005839245.1| - 0.16 11.6 0.0 0.21 11.1 0.0 1.2 1 0 0 1 1 1 0 Nucleotide hydrolase CARDB PF07705.11 gi|385802846|ref|YP_005839246.1| - 0.0011 19.2 0.1 0.0019 18.4 0.1 1.4 1 0 0 1 1 1 1 CARDB DUF4919 PF16266.5 gi|385802846|ref|YP_005839246.1| - 0.069 13.1 0.1 0.12 12.3 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4919) Phage_holin_3_6 PF07332.11 gi|385802846|ref|YP_005839246.1| - 2.8 8.0 10.2 0.6 10.2 5.4 2.0 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III SBBP PF06739.11 gi|385802848|ref|YP_005839248.1| - 0.0011 18.9 0.2 1.4 9.0 0.0 2.7 3 0 0 3 3 3 2 Beta-propeller repeat Nup54 PF13874.6 gi|385802849|ref|YP_005839249.1| - 0.012 15.8 3.5 0.012 15.8 3.5 2.3 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 ABC_tran_CTD PF16326.5 gi|385802849|ref|YP_005839249.1| - 0.015 15.5 10.0 2.8 8.2 0.5 4.1 2 1 1 3 3 3 0 ABC transporter C-terminal domain Lipoprotein_7 PF01540.16 gi|385802849|ref|YP_005839249.1| - 0.047 13.0 2.6 0.14 11.5 0.3 2.2 2 1 0 2 2 2 0 Adhesin lipoprotein AGOG PF09171.10 gi|385802849|ref|YP_005839249.1| - 0.057 12.7 0.0 0.096 12.0 0.0 1.3 1 0 0 1 1 1 0 N-glycosylase/DNA lyase DNA_repr_REX1B PF14966.6 gi|385802849|ref|YP_005839249.1| - 0.058 14.0 3.0 0.11 13.1 0.2 2.5 2 1 1 3 3 3 0 DNA repair REX1-B Ubiquitin_3 PF14836.6 gi|385802849|ref|YP_005839249.1| - 0.1 12.6 1.7 0.16 12.0 0.3 2.1 2 1 0 2 2 2 0 Ubiquitin-like domain Snapin_Pallidin PF14712.6 gi|385802849|ref|YP_005839249.1| - 0.1 13.0 12.0 0.13 12.7 1.5 3.3 3 1 0 3 3 3 0 Snapin/Pallidin HalX PF08663.10 gi|385802849|ref|YP_005839249.1| - 0.11 12.8 5.1 7.2 7.0 0.2 3.6 2 1 1 3 3 3 0 HalX domain STAT_alpha PF01017.20 gi|385802849|ref|YP_005839249.1| - 0.15 12.0 5.4 0.099 12.5 0.7 2.2 2 0 0 2 2 2 0 STAT protein, all-alpha domain COG2 PF06148.11 gi|385802849|ref|YP_005839249.1| - 0.15 12.2 8.6 3.3 7.8 0.7 3.1 2 1 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF2703 PF10865.8 gi|385802849|ref|YP_005839249.1| - 0.17 12.0 1.2 0.52 10.5 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF2703) DUF1664 PF07889.12 gi|385802849|ref|YP_005839249.1| - 0.19 11.8 10.6 0.45 10.6 1.5 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF1664) Homeodomain PF00046.29 gi|385802849|ref|YP_005839249.1| - 0.24 11.3 1.5 1 9.3 0.0 2.6 3 0 0 3 3 2 0 Homeodomain BRX_N PF13713.6 gi|385802849|ref|YP_005839249.1| - 0.26 11.1 1.6 48 3.8 0.0 3.4 3 0 0 3 3 3 0 Transcription factor BRX N-terminal domain CLZ PF16526.5 gi|385802849|ref|YP_005839249.1| - 0.3 11.5 6.4 2.1 8.8 0.4 3.4 3 0 0 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Com_YlbF PF06133.11 gi|385802849|ref|YP_005839249.1| - 2.3 8.9 9.4 1 10.0 5.7 2.3 1 1 1 2 2 2 0 Control of competence regulator ComK, YlbF/YmcA MukF_M PF17192.4 gi|385802849|ref|YP_005839249.1| - 6 6.6 9.7 0.84 9.4 1.8 3.1 2 1 1 3 3 3 0 MukF middle domain AAA PF00004.29 gi|385802851|ref|YP_005839251.1| - 5e-29 101.4 0.0 1.2e-28 100.1 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|385802851|ref|YP_005839251.1| - 0.00032 21.0 0.1 0.0031 17.8 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|385802851|ref|YP_005839251.1| - 0.00052 20.4 0.6 0.036 14.4 0.0 2.8 1 1 1 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 gi|385802851|ref|YP_005839251.1| - 0.00061 19.8 0.1 0.0034 17.4 0.0 2.3 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|385802851|ref|YP_005839251.1| - 0.0016 18.2 0.0 0.019 14.7 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_25 PF13481.6 gi|385802851|ref|YP_005839251.1| - 0.0081 15.7 0.3 0.039 13.5 0.1 2.2 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|385802851|ref|YP_005839251.1| - 0.01 15.6 0.0 0.028 14.2 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|385802851|ref|YP_005839251.1| - 0.01 15.6 0.1 0.027 14.3 0.1 1.6 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), domain 2 AAA_28 PF13521.6 gi|385802851|ref|YP_005839251.1| - 0.023 15.0 0.0 0.09 13.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|385802851|ref|YP_005839251.1| - 0.024 14.0 0.0 0.053 12.9 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|385802851|ref|YP_005839251.1| - 0.037 14.4 0.0 0.082 13.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|385802851|ref|YP_005839251.1| - 0.079 13.5 0.0 0.31 11.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|385802851|ref|YP_005839251.1| - 0.12 12.3 0.2 4.9 7.0 0.1 2.5 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea ATPase PF06745.13 gi|385802851|ref|YP_005839251.1| - 0.14 11.5 0.1 0.49 9.7 0.0 1.9 2 0 0 2 2 2 0 KaiC PQQ_2 PF13360.6 gi|385802852|ref|YP_005839252.1| - 4.2e-07 29.8 6.5 6.4e-07 29.2 1.8 3.2 2 1 1 3 3 3 2 PQQ-like domain PQQ PF01011.21 gi|385802852|ref|YP_005839252.1| - 0.13 12.2 0.1 2.3 8.3 0.0 2.9 2 0 0 2 2 2 0 PQQ enzyme repeat PQQ_3 PF13570.6 gi|385802852|ref|YP_005839252.1| - 2.1 8.9 8.6 1.9 9.1 0.3 4.0 3 1 0 3 3 3 0 PQQ-like domain NPCBM_assoc PF10633.9 gi|385802853|ref|YP_005839253.1| - 0.0026 18.0 10.2 0.34 11.2 0.2 4.6 3 1 1 4 4 4 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF148 PF02520.17 gi|385802853|ref|YP_005839253.1| - 0.08 13.1 3.4 0.22 11.6 3.4 1.7 1 0 0 1 1 1 0 Domain of unknown function DUF148 TPR_12 PF13424.6 gi|385802853|ref|YP_005839253.1| - 0.21 11.9 10.1 1 9.7 1.8 2.8 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF2530 PF10745.9 gi|385802854|ref|YP_005839254.1| - 0.0044 17.2 2.1 0.01 16.0 0.6 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF2530) CarboxypepD_reg PF13620.6 gi|385802855|ref|YP_005839255.1| - 2.7e-06 27.5 2.9 4e-05 23.8 0.8 6.7 7 1 0 7 7 7 3 Carboxypeptidase regulatory-like domain Cu-oxidase PF00394.22 gi|385802855|ref|YP_005839255.1| - 0.0012 19.0 2.1 0.026 14.7 0.3 3.0 2 0 0 2 2 2 1 Multicopper oxidase Glucodextran_B PF09136.10 gi|385802855|ref|YP_005839255.1| - 0.094 13.1 2.9 0.65 10.4 1.2 3.2 2 0 0 2 2 2 0 Glucodextranase, domain B Y_Y_Y PF07495.13 gi|385802855|ref|YP_005839255.1| - 0.18 11.8 4.5 8.2 6.5 0.0 3.4 4 0 0 4 4 4 0 Y_Y_Y domain Tubulin PF00091.25 gi|385802856|ref|YP_005839256.1| - 1.4e-08 35.2 0.0 2.5e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Methyltransf_10 PF05971.12 gi|385802857|ref|YP_005839257.1| - 0.055 12.8 0.0 0.1 11.9 0.0 1.4 1 0 0 1 1 1 0 RNA methyltransferase DUF16 PF01519.16 gi|385802857|ref|YP_005839257.1| - 0.081 13.4 0.9 1.4 9.5 0.0 3.0 1 1 2 3 3 3 0 Protein of unknown function DUF16 SpaA PF17802.1 gi|385802857|ref|YP_005839257.1| - 0.084 13.2 2.3 1.1 9.6 1.7 2.9 1 1 0 1 1 1 0 Prealbumin-like fold domain DUF3923 PF13061.6 gi|385802857|ref|YP_005839257.1| - 0.091 12.9 0.3 25 5.1 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3923) Prominin PF05478.11 gi|385802857|ref|YP_005839257.1| - 0.11 10.5 1.3 0.16 9.9 1.3 1.1 1 0 0 1 1 1 0 Prominin ABC_tran_CTD PF16326.5 gi|385802857|ref|YP_005839257.1| - 0.33 11.2 6.9 4 7.8 0.1 3.8 3 1 1 4 4 4 0 ABC transporter C-terminal domain NPV_P10 PF05531.12 gi|385802857|ref|YP_005839257.1| - 0.68 10.4 9.7 1.2 9.7 1.2 4.4 2 1 2 4 4 4 0 Nucleopolyhedrovirus P10 protein CDPS PF16715.5 gi|385802857|ref|YP_005839257.1| - 1.6 8.3 4.6 0.56 9.8 1.6 1.7 2 0 0 2 2 2 0 Cyclodipeptide synthase Adhesin_P1_N PF18652.1 gi|385802858|ref|YP_005839258.1| - 0.0085 16.1 0.9 0.025 14.6 0.3 2.2 2 0 0 2 2 2 1 Adhesin P1 N-terminal domain Dynactin_p22 PF07426.11 gi|385802858|ref|YP_005839258.1| - 0.094 12.6 2.2 0.32 10.8 0.4 2.1 2 0 0 2 2 2 0 Dynactin subunit p22 Prefoldin_2 PF01920.20 gi|385802858|ref|YP_005839258.1| - 1 9.4 5.3 11 6.1 1.2 2.3 2 0 0 2 2 2 0 Prefoldin subunit DUF948 PF06103.11 gi|385802858|ref|YP_005839258.1| - 1.2 9.4 7.2 0.43 10.9 1.4 2.8 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF948) Muted PF14942.6 gi|385802858|ref|YP_005839258.1| - 1.5 9.2 5.4 2.8 8.3 5.3 1.5 1 1 0 1 1 1 0 Organelle biogenesis, Muted-like protein Uds1 PF15456.6 gi|385802858|ref|YP_005839258.1| - 2.2 8.5 10.8 0.84 9.8 1.5 2.2 1 1 1 2 2 2 0 Up-regulated During Septation UPF0242 PF06785.11 gi|385802858|ref|YP_005839258.1| - 2.2 8.3 4.7 3.4 7.7 4.7 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Syntaxin-6_N PF09177.11 gi|385802858|ref|YP_005839258.1| - 5.6 7.6 7.1 2.5 8.7 3.7 2.0 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Romo1 PF10247.9 gi|385802859|ref|YP_005839259.1| - 0.31 11.4 7.0 0.25 11.7 1.6 2.2 2 0 0 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 FAM70 PF14967.6 gi|385802859|ref|YP_005839259.1| - 4.3 6.7 5.4 2.8 7.3 0.1 2.0 2 0 0 2 2 2 0 FAM70 protein Tubulin PF00091.25 gi|385802860|ref|YP_005839260.1| - 2.2e-10 41.1 0.3 5.8e-08 33.2 0.1 2.8 2 1 0 2 2 2 2 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|385802860|ref|YP_005839260.1| - 0.0032 16.7 0.0 0.005 16.1 0.0 1.4 1 0 0 1 1 1 1 Tubulin like T3SchapCesA PF11439.8 gi|385802861|ref|YP_005839261.1| - 0.0041 17.2 2.7 3 8.1 0.1 3.7 3 0 0 3 3 3 1 Type III secretion system filament chaperone CesA Lipoprotein_16 PF03923.13 gi|385802861|ref|YP_005839261.1| - 0.0064 16.2 0.5 0.4 10.3 0.2 2.6 2 0 0 2 2 2 1 Uncharacterized lipoprotein SCHIP-1 PF10148.9 gi|385802861|ref|YP_005839261.1| - 0.021 14.5 1.4 0.082 12.5 1.4 1.8 1 1 0 1 1 1 0 Schwannomin-interacting protein 1 DUF935 PF06074.12 gi|385802861|ref|YP_005839261.1| - 0.25 10.0 11.3 0.039 12.7 3.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF935) DUF4088 PF13317.6 gi|385802861|ref|YP_005839261.1| - 0.46 10.0 3.3 0.14 11.7 0.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF4088) YtxH PF12732.7 gi|385802861|ref|YP_005839261.1| - 1.2 9.7 10.1 8.4 7.0 0.0 4.2 5 1 0 5 5 5 0 YtxH-like protein SCO1-SenC PF02630.14 gi|385802861|ref|YP_005839261.1| - 1.5 8.8 4.7 2 8.3 0.4 2.7 2 1 0 2 2 2 0 SCO1/SenC Tubulin PF00091.25 gi|385802862|ref|YP_005839262.1| - 1.8e-14 54.4 0.1 2.1e-13 50.9 0.1 2.4 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|385802862|ref|YP_005839262.1| - 0.01 15.0 3.0 0.023 13.9 0.0 2.4 3 0 0 3 3 3 0 Tubulin like Macoilin PF09726.9 gi|385802862|ref|YP_005839262.1| - 0.26 9.8 3.4 0.3 9.6 3.4 1.1 1 0 0 1 1 1 0 Macoilin family Apt1 PF10351.9 gi|385802862|ref|YP_005839262.1| - 8.9 5.0 10.1 13 4.5 10.1 1.2 1 0 0 1 1 1 0 Golgi-body localisation protein domain Baculo_PEP_C PF04513.12 gi|385802863|ref|YP_005839263.1| - 0.026 14.6 7.2 0.081 13.0 0.3 2.9 2 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2959 PF11172.8 gi|385802863|ref|YP_005839263.1| - 0.5 10.5 7.9 2.2 8.4 3.3 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2959) COG2 PF06148.11 gi|385802863|ref|YP_005839263.1| - 0.5 10.5 2.2 3.4 7.8 0.0 2.8 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 TPR_MLP1_2 PF07926.12 gi|385802863|ref|YP_005839263.1| - 0.52 10.4 7.2 2.4 8.2 0.1 3.2 2 1 1 3 3 3 0 TPR/MLP1/MLP2-like protein ApoLp-III PF07464.11 gi|385802863|ref|YP_005839263.1| - 0.66 10.1 9.0 11 6.1 5.1 2.4 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) DUF4140 PF13600.6 gi|385802863|ref|YP_005839263.1| - 2.1 8.8 7.9 4.7 7.7 1.1 3.4 2 2 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) HsbA PF12296.8 gi|385802863|ref|YP_005839263.1| - 2.9 8.3 10.6 1.2 9.6 1.0 3.0 2 1 1 3 3 3 0 Hydrophobic surface binding protein A Fez1 PF06818.15 gi|385802863|ref|YP_005839263.1| - 4.2 7.8 8.3 3.9 7.9 2.8 2.3 2 0 0 2 2 2 0 Fez1 Prefoldin_2 PF01920.20 gi|385802863|ref|YP_005839263.1| - 5 7.1 6.5 4.4 7.3 0.3 3.3 3 1 0 3 3 3 0 Prefoldin subunit Filament PF00038.21 gi|385802863|ref|YP_005839263.1| - 5 6.6 8.1 4 6.9 0.4 2.3 2 0 0 2 2 2 0 Intermediate filament protein WXG100 PF06013.12 gi|385802863|ref|YP_005839263.1| - 6.8 7.0 8.8 1.7 8.9 0.4 3.5 2 1 1 3 3 3 0 Proteins of 100 residues with WXG MutS_V PF00488.21 gi|385802864|ref|YP_005839264.1| - 2.1e-80 269.2 0.1 4.3e-80 268.2 0.1 1.5 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.18 gi|385802864|ref|YP_005839264.1| - 3e-37 128.7 4.1 9.7e-37 127.1 4.1 1.9 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.20 gi|385802864|ref|YP_005839264.1| - 1.1e-25 90.1 0.0 2.4e-25 89.0 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.18 gi|385802864|ref|YP_005839264.1| - 5.5e-24 84.3 1.9 1.2e-23 83.3 1.9 1.6 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|385802864|ref|YP_005839264.1| - 2.1e-18 66.9 0.5 9e-18 64.9 0.0 2.3 3 0 0 3 3 3 1 MutS domain II AAA_27 PF13514.6 gi|385802864|ref|YP_005839264.1| - 0.017 14.7 0.0 0.062 12.9 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|385802864|ref|YP_005839264.1| - 0.049 13.4 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|385802864|ref|YP_005839264.1| - 0.093 12.8 0.0 0.36 10.9 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|385802864|ref|YP_005839264.1| - 0.55 10.7 4.2 1.6 9.2 0.0 3.0 3 0 0 3 3 3 0 AAA domain adh_short_C2 PF13561.6 gi|385802865|ref|YP_005839265.1| - 4e-43 147.7 0.1 1.7e-42 145.6 0.1 1.7 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|385802865|ref|YP_005839265.1| - 3.8e-37 127.6 0.0 4.8e-37 127.3 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|385802865|ref|YP_005839265.1| - 6e-09 36.1 0.1 8.8e-09 35.5 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|385802865|ref|YP_005839265.1| - 0.0044 16.5 0.1 0.014 14.9 0.0 1.7 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.19 gi|385802865|ref|YP_005839265.1| - 0.11 11.9 0.4 0.34 10.2 0.1 1.9 1 1 1 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AstE_AspA PF04952.14 gi|385802866|ref|YP_005839266.1| - 1.2e-12 47.5 0.0 2.1e-12 46.7 0.0 1.4 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M99 PF17033.5 gi|385802866|ref|YP_005839266.1| - 0.00032 20.2 0.0 0.00069 19.1 0.0 1.5 1 0 0 1 1 1 1 Carboxypeptidase controlling helical cell shape catalytic EamA PF00892.20 gi|385802867|ref|YP_005839267.1| - 4.4e-20 72.2 23.5 9.3e-14 51.8 6.4 2.1 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|385802867|ref|YP_005839267.1| - 0.00014 21.9 0.4 0.00014 21.9 0.4 2.8 3 0 0 3 3 3 1 Putative transmembrane family 234 SBF PF01758.16 gi|385802867|ref|YP_005839267.1| - 0.18 11.5 8.3 0.034 13.8 3.5 2.1 1 1 1 2 2 2 0 Sodium Bile acid symporter family ATP-grasp PF02222.22 gi|385802868|ref|YP_005839268.1| - 2e-58 196.8 0.0 3.4e-58 196.0 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|385802868|ref|YP_005839268.1| - 1.3e-09 37.9 0.1 1e-08 35.0 0.0 2.3 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|385802868|ref|YP_005839268.1| - 3.7e-09 36.4 0.0 1.5e-08 34.4 0.0 1.9 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain GARS_A PF01071.19 gi|385802868|ref|YP_005839268.1| - 1.6e-06 28.0 0.0 2.7e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_3 PF02655.14 gi|385802868|ref|YP_005839268.1| - 0.00036 20.6 0.0 0.00074 19.6 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain Epimerase PF01370.21 gi|385802868|ref|YP_005839268.1| - 0.0012 18.3 0.0 0.0019 17.7 0.0 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 2-Hacid_dh_C PF02826.19 gi|385802868|ref|YP_005839268.1| - 0.0027 17.1 0.0 0.0054 16.1 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATPgrasp_N PF18130.1 gi|385802868|ref|YP_005839268.1| - 0.0048 17.4 0.8 0.049 14.2 0.3 2.6 2 0 0 2 2 2 1 ATP-grasp N-terminal domain RimK PF08443.11 gi|385802868|ref|YP_005839268.1| - 0.01 15.4 0.0 0.046 13.3 0.0 2.0 2 1 0 2 2 2 0 RimK-like ATP-grasp domain RmlD_sub_bind PF04321.17 gi|385802868|ref|YP_005839268.1| - 0.013 14.6 0.1 0.025 13.7 0.1 1.5 1 0 0 1 1 1 0 RmlD substrate binding domain ATP-grasp_4 PF13535.6 gi|385802868|ref|YP_005839268.1| - 0.029 14.0 0.0 0.069 12.8 0.0 1.6 1 1 0 1 1 1 0 ATP-grasp domain PurK_C PF17769.1 gi|385802868|ref|YP_005839268.1| - 0.036 13.8 0.0 0.07 12.8 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosylaminoimidazole carboxylase C-terminal domain XdhC_C PF13478.6 gi|385802868|ref|YP_005839268.1| - 0.075 13.5 0.1 0.13 12.7 0.1 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain ATPgrasp_ST PF14397.6 gi|385802868|ref|YP_005839268.1| - 0.11 11.8 0.1 0.7 9.1 0.0 2.3 2 1 0 2 2 2 0 Sugar-transfer associated ATP-grasp Inositol_P PF00459.25 gi|385802869|ref|YP_005839269.1| - 4.6e-55 187.0 0.0 6.9e-55 186.5 0.0 1.2 1 0 0 1 1 1 1 Inositol monophosphatase family NAD_kinase PF01513.21 gi|385802869|ref|YP_005839269.1| - 5.3e-29 101.3 0.3 9.1e-29 100.6 0.3 1.4 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|385802869|ref|YP_005839269.1| - 0.01 15.4 0.4 0.031 13.9 0.0 1.9 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain FBPase PF00316.20 gi|385802869|ref|YP_005839269.1| - 0.016 14.7 0.0 0.029 13.8 0.0 1.3 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase, N-terminal domain Methyltransf_25 PF13649.6 gi|385802869|ref|YP_005839269.1| - 0.13 13.0 0.1 0.64 10.8 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain Ribonuc_L-PSP PF01042.21 gi|385802870|ref|YP_005839270.1| - 1.4e-25 89.7 0.1 1.5e-25 89.5 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP MFS_1 PF07690.16 gi|385802871|ref|YP_005839271.1| - 1e-42 146.4 69.2 9.6e-40 136.6 46.2 1.7 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|385802871|ref|YP_005839271.1| - 0.28 10.0 39.3 0.044 12.6 11.5 2.4 1 1 1 2 2 2 0 Sugar (and other) transporter OATP PF03137.20 gi|385802871|ref|YP_005839271.1| - 0.96 7.6 17.7 0.02 13.2 3.4 3.2 3 0 0 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family ABC_tran PF00005.27 gi|385802872|ref|YP_005839272.1| - 8.2e-31 107.3 0.0 1.3e-30 106.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385802872|ref|YP_005839272.1| - 5.2e-11 42.9 0.0 0.00027 20.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385802872|ref|YP_005839272.1| - 1.2e-08 34.7 0.1 6.2e-05 22.5 0.0 2.2 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|385802872|ref|YP_005839272.1| - 2.1e-05 24.8 0.0 7.1e-05 23.1 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|385802872|ref|YP_005839272.1| - 3.1e-05 23.9 0.0 0.00036 20.4 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|385802872|ref|YP_005839272.1| - 7.5e-05 23.2 0.1 0.00024 21.5 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|385802872|ref|YP_005839272.1| - 0.00014 21.5 0.1 0.02 14.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|385802872|ref|YP_005839272.1| - 0.00029 20.8 0.0 0.00063 19.7 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|385802872|ref|YP_005839272.1| - 0.00044 19.9 0.0 0.0011 18.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.15 gi|385802872|ref|YP_005839272.1| - 0.0021 18.0 0.0 0.0036 17.2 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_23 PF13476.6 gi|385802872|ref|YP_005839272.1| - 0.0038 17.8 0.0 0.0086 16.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain DeoRC PF00455.22 gi|385802872|ref|YP_005839272.1| - 0.025 14.5 0.0 0.043 13.8 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain AAA_18 PF13238.6 gi|385802872|ref|YP_005839272.1| - 0.027 15.0 0.1 0.073 13.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|385802872|ref|YP_005839272.1| - 0.029 14.5 0.0 0.043 14.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|385802872|ref|YP_005839272.1| - 0.043 13.5 0.0 0.93 9.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain PRK PF00485.18 gi|385802872|ref|YP_005839272.1| - 0.043 13.5 0.0 0.075 12.8 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family MMR_HSR1 PF01926.23 gi|385802872|ref|YP_005839272.1| - 0.081 13.0 0.0 0.18 11.9 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase T2SSE PF00437.20 gi|385802872|ref|YP_005839272.1| - 0.097 11.7 0.0 0.23 10.5 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_7 PF12775.7 gi|385802872|ref|YP_005839272.1| - 0.19 11.3 0.0 0.41 10.1 0.0 1.5 2 0 0 2 2 2 0 P-loop containing dynein motor region BPD_transp_1 PF00528.22 gi|385802873|ref|YP_005839273.1| - 1.4e-21 77.1 13.5 1.4e-21 77.1 13.5 5.0 1 1 1 5 5 5 2 Binding-protein-dependent transport system inner membrane component CRPA PF05745.11 gi|385802873|ref|YP_005839273.1| - 9.4 6.2 11.6 0.08 13.0 1.9 2.5 2 0 0 2 2 2 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) BPD_transp_1 PF00528.22 gi|385802874|ref|YP_005839274.1| - 6.7e-16 58.6 15.8 6.7e-16 58.6 15.8 2.7 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4022 PF13214.6 gi|385802874|ref|YP_005839274.1| - 6.8 7.0 10.8 1.7 9.0 6.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4022) PBP_like_2 PF12849.7 gi|385802875|ref|YP_005839275.1| - 3.6e-22 79.3 3.3 7.4e-22 78.3 2.7 1.9 1 1 1 2 2 2 1 PBP superfamily domain PBP_like PF12727.7 gi|385802875|ref|YP_005839275.1| - 1.1e-15 57.2 0.1 1.8e-15 56.5 0.1 1.2 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.9 gi|385802875|ref|YP_005839275.1| - 0.00038 20.2 1.5 0.00072 19.3 1.5 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence PSK_trans_fac PF07704.11 gi|385802876|ref|YP_005839276.1| - 1.5 9.6 11.5 0.33 11.7 5.4 3.0 2 2 0 2 2 2 0 Rv0623-like transcription factor Pribosyltran PF00156.27 gi|385802878|ref|YP_005839278.1| - 2.9e-22 78.9 0.1 3.8e-22 78.5 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|385802878|ref|YP_005839278.1| - 0.019 14.4 0.1 0.038 13.4 0.1 1.5 2 0 0 2 2 2 0 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|385802878|ref|YP_005839278.1| - 0.16 11.5 0.3 0.32 10.5 0.2 1.5 1 1 0 1 1 1 0 Phosphoribosyl transferase PfkB PF00294.24 gi|385802879|ref|YP_005839279.1| - 1.9e-30 106.2 0.0 1e-18 67.7 0.0 2.2 2 0 0 2 2 2 2 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|385802879|ref|YP_005839279.1| - 0.00044 19.7 0.1 0.0015 18.0 0.0 1.8 2 0 0 2 2 2 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 gi|385802879|ref|YP_005839279.1| - 0.056 12.9 0.1 0.13 11.7 0.0 1.6 2 0 0 2 2 2 0 Carbohydrate kinase HRG PF16954.5 gi|385802881|ref|YP_005839281.1| - 0.013 15.9 3.4 0.14 12.6 2.6 2.2 2 0 0 2 2 2 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene ABC_tran PF00005.27 gi|385802882|ref|YP_005839282.1| - 3.5e-33 115.0 0.0 5.8e-33 114.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|385802882|ref|YP_005839282.1| - 1.6e-16 60.6 0.2 3.3e-16 59.5 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|385802882|ref|YP_005839282.1| - 7e-07 29.3 0.1 0.0077 16.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|385802882|ref|YP_005839282.1| - 0.00098 19.4 0.1 0.003 17.8 0.1 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|385802882|ref|YP_005839282.1| - 0.0017 17.8 0.0 0.0058 16.1 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|385802882|ref|YP_005839282.1| - 0.021 14.6 0.2 0.047 13.4 0.2 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|385802882|ref|YP_005839282.1| - 0.024 15.0 1.1 0.068 13.6 1.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_13 PF13166.6 gi|385802882|ref|YP_005839282.1| - 0.026 13.2 0.1 4.4 5.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|385802882|ref|YP_005839282.1| - 0.065 12.9 0.1 14 5.3 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_25 PF13481.6 gi|385802882|ref|YP_005839282.1| - 0.1 12.1 0.4 0.63 9.6 0.4 2.1 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|385802882|ref|YP_005839282.1| - 0.15 12.0 0.1 0.26 11.2 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_5 PF07728.14 gi|385802882|ref|YP_005839282.1| - 0.15 12.1 0.3 4.7 7.2 0.4 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Septin PF00735.18 gi|385802882|ref|YP_005839282.1| - 0.15 11.3 0.0 0.22 10.7 0.0 1.2 1 0 0 1 1 1 0 Septin NACHT PF05729.12 gi|385802882|ref|YP_005839282.1| - 0.19 11.6 0.3 0.5 10.3 0.3 1.7 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 gi|385802883|ref|YP_005839283.1| - 1.5e-27 96.7 0.0 2.4e-27 96.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|385802883|ref|YP_005839283.1| - 1.3e-19 70.5 0.1 3.5e-19 69.1 0.1 1.8 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|385802883|ref|YP_005839283.1| - 1.5e-07 31.6 0.4 6.8e-06 26.1 0.0 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385802883|ref|YP_005839283.1| - 0.00017 21.1 0.0 0.00041 19.8 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|385802883|ref|YP_005839283.1| - 0.0051 17.2 0.0 0.0098 16.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|385802883|ref|YP_005839283.1| - 0.0064 16.8 0.1 0.41 10.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|385802883|ref|YP_005839283.1| - 0.0078 15.9 0.0 0.017 14.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF87 PF01935.17 gi|385802883|ref|YP_005839283.1| - 0.082 13.0 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain Sigma54_activat PF00158.26 gi|385802883|ref|YP_005839283.1| - 0.17 11.6 0.1 0.61 9.8 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain AIG1 PF04548.16 gi|385802883|ref|YP_005839283.1| - 0.32 10.3 1.4 1.4 8.2 0.4 2.4 3 0 0 3 3 3 0 AIG1 family BPD_transp_1 PF00528.22 gi|385802884|ref|YP_005839284.1| - 1.5e-19 70.4 14.8 1.5e-19 70.4 14.8 2.7 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|385802884|ref|YP_005839284.1| - 0.00084 19.3 0.0 0.00084 19.3 0.0 4.4 5 1 0 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C FliP PF00813.20 gi|385802884|ref|YP_005839284.1| - 0.5 10.2 4.0 6.2 6.7 0.4 3.0 3 0 0 3 3 3 0 FliP family BPD_transp_1 PF00528.22 gi|385802885|ref|YP_005839285.1| - 2.3e-29 102.4 16.2 2.3e-29 102.4 16.2 2.6 2 2 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|385802886|ref|YP_005839286.1| - 3e-59 200.9 6.2 2.7e-47 161.6 2.1 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|385802886|ref|YP_005839286.1| - 2.4e-06 27.2 1.1 4e-06 26.4 1.1 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|385802886|ref|YP_005839286.1| - 0.011 15.0 2.6 0.021 14.1 2.6 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal MFS_1 PF07690.16 gi|385802887|ref|YP_005839287.1| - 1.5e-41 142.5 61.3 2.4e-30 105.7 29.9 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily G_glu_transpept PF01019.21 gi|385802888|ref|YP_005839288.1| - 1.4e-141 472.8 0.0 1.6e-141 472.6 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase LPG_synthase_TM PF03706.13 gi|385802889|ref|YP_005839289.1| - 9e-38 130.5 32.5 1.2e-37 130.1 32.5 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Glycos_transf_2 PF00535.26 gi|385802889|ref|YP_005839289.1| - 5.3e-27 94.7 0.0 7.6e-27 94.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|385802889|ref|YP_005839289.1| - 3.2e-07 30.5 0.0 6.3e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|385802889|ref|YP_005839289.1| - 0.0039 16.7 0.0 0.0059 16.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|385802889|ref|YP_005839289.1| - 0.037 14.5 0.0 0.085 13.4 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 Sigma54_CBD PF04963.13 gi|385802890|ref|YP_005839290.1| - 0.034 14.0 0.1 0.069 13.0 0.1 1.5 1 1 1 2 2 2 0 Sigma-54 factor, core binding domain HTH_50 PF18024.1 gi|385802890|ref|YP_005839290.1| - 0.041 13.5 0.2 0.079 12.6 0.2 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain RepL PF05732.11 gi|385802890|ref|YP_005839290.1| - 0.059 12.8 0.1 0.08 12.4 0.1 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_24 PF13412.6 gi|385802891|ref|YP_005839291.1| - 1.7e-11 43.4 0.0 5.6e-07 29.0 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|385802891|ref|YP_005839291.1| - 6.9e-08 32.2 0.0 0.00071 19.4 0.0 2.2 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|385802891|ref|YP_005839291.1| - 2.7e-07 30.4 0.1 4.8e-05 23.2 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_34 PF13601.6 gi|385802891|ref|YP_005839291.1| - 3.9e-07 30.2 0.0 0.024 14.8 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|385802891|ref|YP_005839291.1| - 1.1e-05 25.4 0.0 0.11 12.6 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain MarR PF01047.22 gi|385802891|ref|YP_005839291.1| - 2.2e-05 24.3 0.0 0.00011 22.0 0.0 2.1 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|385802891|ref|YP_005839291.1| - 0.00027 20.7 0.0 0.0051 16.7 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|385802891|ref|YP_005839291.1| - 0.00037 20.4 0.0 0.00079 19.4 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain RP-C PF03428.13 gi|385802891|ref|YP_005839291.1| - 0.00071 19.3 0.1 0.61 9.7 0.0 2.2 2 0 0 2 2 2 2 Replication protein C N-terminal domain HTH_11 PF08279.12 gi|385802891|ref|YP_005839291.1| - 0.0019 18.1 0.1 0.0036 17.2 0.1 1.5 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|385802891|ref|YP_005839291.1| - 0.0026 17.9 0.0 0.0056 16.9 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.6 gi|385802891|ref|YP_005839291.1| - 0.0089 15.8 0.0 0.023 14.5 0.0 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain RPA_C PF08784.11 gi|385802891|ref|YP_005839291.1| - 0.013 16.1 0.5 0.074 13.7 0.0 2.0 2 0 0 2 2 2 0 Replication protein A C terminal DUF2250 PF10007.9 gi|385802891|ref|YP_005839291.1| - 0.027 14.6 0.0 0.16 12.1 0.0 2.1 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.6 gi|385802891|ref|YP_005839291.1| - 0.2 11.4 0.0 2.9 7.6 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) Band_7 PF01145.25 gi|385802892|ref|YP_005839292.1| - 3.7e-39 134.5 2.7 3.7e-39 134.5 2.7 2.4 2 1 1 3 3 3 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|385802892|ref|YP_005839292.1| - 0.00024 20.9 0.7 0.00049 19.9 0.3 1.7 2 0 0 2 2 2 1 SPFH domain-Band 7 family ABC_tran PF00005.27 gi|385802893|ref|YP_005839293.1| - 7e-27 94.6 0.0 1.2e-26 93.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385802893|ref|YP_005839293.1| - 3.3e-16 60.0 0.0 2.3e-09 37.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|385802893|ref|YP_005839293.1| - 7.1e-05 23.4 0.0 0.00013 22.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|385802893|ref|YP_005839293.1| - 0.00054 19.7 0.0 0.0016 18.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|385802893|ref|YP_005839293.1| - 0.001 18.8 0.0 0.47 10.1 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|385802893|ref|YP_005839293.1| - 0.0014 18.1 0.0 0.18 11.2 0.0 2.3 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|385802893|ref|YP_005839293.1| - 0.0019 17.9 0.1 0.0046 16.7 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|385802893|ref|YP_005839293.1| - 0.0046 17.3 0.2 0.092 13.1 0.2 2.5 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|385802893|ref|YP_005839293.1| - 0.0062 16.6 0.2 0.02 15.0 0.2 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA PF00004.29 gi|385802893|ref|YP_005839293.1| - 0.01 16.3 0.1 0.032 14.6 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|385802893|ref|YP_005839293.1| - 0.02 14.7 0.0 0.15 11.8 0.0 2.2 2 1 1 3 3 3 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|385802893|ref|YP_005839293.1| - 0.021 15.1 0.0 0.04 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|385802893|ref|YP_005839293.1| - 0.039 14.0 0.1 0.078 13.0 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RsgA_GTPase PF03193.16 gi|385802893|ref|YP_005839293.1| - 0.053 13.4 0.1 0.096 12.6 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_33 PF13671.6 gi|385802893|ref|YP_005839293.1| - 0.053 13.7 0.7 0.084 13.0 0.7 1.6 1 1 0 1 1 1 0 AAA domain DUF4162 PF13732.6 gi|385802893|ref|YP_005839293.1| - 0.069 13.9 0.0 0.13 13.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) cobW PF02492.19 gi|385802893|ref|YP_005839293.1| - 0.077 12.6 0.3 0.17 11.5 0.3 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain SbcCD_C PF13558.6 gi|385802893|ref|YP_005839293.1| - 0.079 13.2 0.0 0.98 9.7 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.6 gi|385802893|ref|YP_005839293.1| - 0.097 12.4 0.8 1 9.0 0.2 2.5 3 0 0 3 3 3 0 AAA domain AAA_28 PF13521.6 gi|385802893|ref|YP_005839293.1| - 0.097 12.9 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Roc PF08477.13 gi|385802893|ref|YP_005839293.1| - 0.12 12.6 0.1 0.29 11.4 0.1 1.6 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_27 PF13514.6 gi|385802893|ref|YP_005839293.1| - 0.14 11.7 0.0 0.3 10.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC2_membrane PF01061.24 gi|385802894|ref|YP_005839294.1| - 5.5e-20 71.7 17.6 7.9e-20 71.2 17.6 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|385802894|ref|YP_005839294.1| - 2e-08 33.8 13.4 2e-08 33.8 13.4 2.0 2 0 0 2 2 2 2 ABC-2 family transporter protein Aldolase PF01081.19 gi|385802895|ref|YP_005839295.1| - 4.2e-41 140.5 1.1 4.9e-41 140.3 1.1 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase DHO_dh PF01180.21 gi|385802895|ref|YP_005839295.1| - 0.003 16.8 5.8 1.1 8.4 0.6 3.1 2 1 1 3 3 3 3 Dihydroorotate dehydrogenase TMP-TENI PF02581.17 gi|385802895|ref|YP_005839295.1| - 0.0036 16.7 0.5 0.1 11.9 0.1 2.7 2 2 1 3 3 3 1 Thiamine monophosphate synthase FMN_dh PF01070.18 gi|385802895|ref|YP_005839295.1| - 0.014 14.5 0.2 0.13 11.2 0.2 2.0 1 1 0 1 1 1 0 FMN-dependent dehydrogenase YaiA PF16362.5 gi|385802895|ref|YP_005839295.1| - 0.21 11.7 0.0 0.39 10.8 0.0 1.4 1 0 0 1 1 1 0 YaiA protein bPH_2 PF03703.14 gi|385802896|ref|YP_005839296.1| - 1.3e-46 156.6 12.7 5.4e-20 71.4 0.9 4.0 4 0 0 4 4 4 3 Bacterial PH domain bPH_4 PF06713.11 gi|385802896|ref|YP_005839296.1| - 0.0042 17.1 0.0 1 9.5 0.0 3.1 3 0 0 3 3 3 1 Bacterial PH domain NuDC PF16273.5 gi|385802896|ref|YP_005839296.1| - 0.013 16.0 0.5 0.013 16.0 0.5 3.2 2 1 1 3 3 3 0 Nuclear distribution C domain Coiled-coil_56 PF09813.9 gi|385802896|ref|YP_005839296.1| - 0.12 12.4 0.1 1.7 8.7 0.0 2.5 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 56 DUF5381 PF17353.2 gi|385802896|ref|YP_005839296.1| - 0.33 10.7 1.5 0.88 9.3 0.1 2.3 3 0 0 3 3 3 0 Family of unknown function (DUF5381) YwiC PF14256.6 gi|385802896|ref|YP_005839296.1| - 7.4 6.9 10.2 0.15 12.4 0.4 2.6 3 0 0 3 3 3 0 YwiC-like protein bPH_2 PF03703.14 gi|385802897|ref|YP_005839297.1| - 6.3e-20 71.2 0.6 9.1e-20 70.6 0.6 1.2 1 0 0 1 1 1 1 Bacterial PH domain DUF1453 PF07301.11 gi|385802897|ref|YP_005839297.1| - 0.029 14.4 0.6 0.065 13.3 0.4 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1453) LXG PF04740.12 gi|385802898|ref|YP_005839298.1| - 0.034 13.9 0.1 0.069 12.8 0.1 1.6 1 0 0 1 1 1 0 LXG domain of WXG superfamily CopD PF05425.13 gi|385802899|ref|YP_005839299.1| - 1.2e-07 32.0 8.4 1.2e-07 32.0 8.4 1.5 2 0 0 2 2 2 1 Copper resistance protein D DUF2071 PF09844.9 gi|385802900|ref|YP_005839300.1| - 2e-69 233.5 0.0 2.2e-69 233.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.11 gi|385802900|ref|YP_005839300.1| - 0.00085 19.0 0.1 0.0017 18.0 0.1 1.4 1 1 1 2 2 2 1 Acetoacetate decarboxylase (ADC) CENP-F_leu_zip PF10473.9 gi|385802901|ref|YP_005839301.1| - 6.6e-05 23.0 2.1 0.0001 22.3 1.7 1.5 1 1 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Phage_GP20 PF06810.11 gi|385802901|ref|YP_005839301.1| - 0.00062 19.6 1.2 0.0011 18.8 0.6 1.7 2 0 0 2 2 2 1 Phage minor structural protein GP20 DUF773 PF05600.12 gi|385802901|ref|YP_005839301.1| - 0.00064 18.6 0.7 0.00085 18.2 0.7 1.1 1 0 0 1 1 1 1 CDK5 regulatory subunit-associated protein 3 ZapB PF06005.12 gi|385802901|ref|YP_005839301.1| - 0.0048 17.3 1.1 0.057 13.9 1.1 2.3 2 0 0 2 2 2 1 Cell division protein ZapB DUF4164 PF13747.6 gi|385802901|ref|YP_005839301.1| - 0.0068 16.7 2.7 0.0078 16.5 1.8 1.6 2 0 0 2 2 1 1 Domain of unknown function (DUF4164) ALIX_LYPXL_bnd PF13949.6 gi|385802901|ref|YP_005839301.1| - 0.012 14.9 6.4 0.027 13.8 4.1 1.9 1 1 1 2 2 2 0 ALIX V-shaped domain binding to HIV Fzo_mitofusin PF04799.13 gi|385802901|ref|YP_005839301.1| - 0.02 14.5 0.3 0.034 13.7 0.3 1.4 1 0 0 1 1 1 0 fzo-like conserved region DASH_Dad2 PF08654.10 gi|385802901|ref|YP_005839301.1| - 0.037 14.5 2.9 0.037 14.5 2.9 2.0 2 1 1 3 3 3 0 DASH complex subunit Dad2 LXG PF04740.12 gi|385802901|ref|YP_005839301.1| - 0.05 13.3 2.2 0.05 13.3 2.2 2.3 2 1 0 2 2 2 0 LXG domain of WXG superfamily SKA1 PF07160.12 gi|385802901|ref|YP_005839301.1| - 0.062 13.1 1.2 0.11 12.3 0.6 1.6 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 1 DUF1664 PF07889.12 gi|385802901|ref|YP_005839301.1| - 0.067 13.2 3.0 0.18 11.8 2.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) SOAR PF16533.5 gi|385802901|ref|YP_005839301.1| - 0.07 13.1 0.8 0.16 12.0 0.8 1.5 1 0 0 1 1 1 0 STIM1 Orai1-activating region V_ATPase_I PF01496.19 gi|385802901|ref|YP_005839301.1| - 0.1 10.5 0.7 0.11 10.4 0.7 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF4795 PF16043.5 gi|385802901|ref|YP_005839301.1| - 0.12 12.0 5.0 0.11 12.0 0.9 2.4 1 1 2 3 3 3 0 Domain of unknown function (DUF4795) Prefoldin_2 PF01920.20 gi|385802901|ref|YP_005839301.1| - 0.15 12.0 4.6 0.48 10.4 1.7 2.3 1 1 1 2 2 2 0 Prefoldin subunit TMF_DNA_bd PF12329.8 gi|385802901|ref|YP_005839301.1| - 0.2 11.7 4.2 0.24 11.4 1.8 2.3 3 0 0 3 3 3 0 TATA element modulatory factor 1 DNA binding SlyX PF04102.12 gi|385802901|ref|YP_005839301.1| - 0.32 11.6 4.5 1.6 9.4 3.3 2.4 1 1 1 2 2 2 0 SlyX DASH_Duo1 PF08651.10 gi|385802901|ref|YP_005839301.1| - 0.45 10.3 5.3 0.27 11.0 0.7 2.7 3 0 0 3 3 3 0 DASH complex subunit Duo1 FlaC_arch PF05377.11 gi|385802901|ref|YP_005839301.1| - 2.2 8.7 7.9 0.69 10.4 1.7 2.8 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) DUF393 PF04134.12 gi|385802902|ref|YP_005839302.1| - 0.005 18.2 0.1 0.0094 17.3 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function, DUF393 DUF3797 PF12677.7 gi|385802902|ref|YP_005839302.1| - 0.074 12.9 0.2 0.12 12.2 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3797) SRP19 PF01922.17 gi|385802903|ref|YP_005839303.1| - 2.9e-23 82.6 0.0 3.4e-23 82.4 0.0 1.1 1 0 0 1 1 1 1 SRP19 protein PurS PF02700.14 gi|385802903|ref|YP_005839303.1| - 0.084 13.1 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosylformylglycinamidine (FGAM) synthase Gar1 PF04410.14 gi|385802904|ref|YP_005839304.1| - 6e-08 32.6 0.0 6.1e-08 32.6 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region SPP PF06550.11 gi|385802905|ref|YP_005839305.1| - 8.2e-86 288.0 22.8 1.4e-85 287.2 22.8 1.3 1 1 0 1 1 1 1 Signal-peptide peptidase, presenilin aspartyl protease Peptidase_A22B PF04258.13 gi|385802905|ref|YP_005839305.1| - 2.2e-07 30.7 6.7 1.7e-05 24.5 2.9 2.4 2 0 0 2 2 2 2 Signal peptide peptidase Presenilin PF01080.17 gi|385802905|ref|YP_005839305.1| - 1.5e-05 24.0 7.5 0.075 11.8 4.9 3.0 2 1 1 3 3 3 2 Presenilin NYN PF01936.18 gi|385802906|ref|YP_005839306.1| - 2.1e-37 128.9 0.1 2.5e-37 128.6 0.1 1.0 1 0 0 1 1 1 1 NYN domain DUF2529 PF10740.9 gi|385802906|ref|YP_005839306.1| - 0.0088 15.7 0.1 0.022 14.4 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF2529) FMO-like PF00743.19 gi|385802906|ref|YP_005839306.1| - 0.13 10.6 0.0 0.17 10.3 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like DUF498 PF04430.14 gi|385802906|ref|YP_005839306.1| - 0.14 12.2 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF498/DUF598) DHDPS PF00701.22 gi|385802907|ref|YP_005839307.1| - 5.8e-88 294.3 0.0 6.6e-88 294.2 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ThiG PF05690.14 gi|385802907|ref|YP_005839307.1| - 0.0049 16.2 0.1 0.0082 15.5 0.1 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG Peripla_BP_1 PF00532.21 gi|385802907|ref|YP_005839307.1| - 0.085 12.3 0.1 0.65 9.4 0.0 2.0 2 0 0 2 2 2 0 Periplasmic binding proteins and sugar binding domain of LacI family DapB_C PF05173.14 gi|385802908|ref|YP_005839308.1| - 1.8e-35 121.6 0.0 2.6e-35 121.1 0.0 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|385802908|ref|YP_005839308.1| - 9e-21 74.3 0.0 1.8e-20 73.3 0.0 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Bromo_TP PF07524.13 gi|385802908|ref|YP_005839308.1| - 0.1 12.6 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Bromodomain associated SnoaL_2 PF12680.7 gi|385802908|ref|YP_005839308.1| - 0.1 13.3 0.8 6.2 7.5 0.4 2.9 1 1 1 2 2 2 0 SnoaL-like domain THDPS_N_2 PF14805.6 gi|385802909|ref|YP_005839309.1| - 1.3e-20 73.3 0.1 2.1e-20 72.7 0.1 1.3 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.24 gi|385802909|ref|YP_005839309.1| - 2.5e-12 46.0 8.9 5.1e-05 22.8 2.5 3.3 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|385802909|ref|YP_005839309.1| - 0.043 13.6 13.9 0.07 12.9 1.6 3.8 3 2 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase Orn_Arg_deC_N PF02784.16 gi|385802910|ref|YP_005839310.1| - 2.9e-43 148.0 0.0 4.1e-43 147.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|385802910|ref|YP_005839310.1| - 1e-24 86.6 0.0 1.2e-24 86.3 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EccE PF11203.8 gi|385802910|ref|YP_005839310.1| - 0.057 13.8 0.2 0.39 11.1 0.0 2.3 1 1 1 2 2 2 0 Putative type VII ESX secretion system translocon, EccE DAP_epimerase PF01678.19 gi|385802911|ref|YP_005839311.1| - 9.2e-42 142.0 2.3 7.4e-20 71.3 0.1 2.3 2 0 0 2 2 2 2 Diaminopimelate epimerase Pro_racemase PF05544.11 gi|385802911|ref|YP_005839311.1| - 0.0021 17.2 2.8 0.19 10.7 0.2 2.2 2 0 0 2 2 2 2 Proline racemase RNase_PH PF01138.21 gi|385802911|ref|YP_005839311.1| - 0.023 15.2 0.9 0.22 12.0 0.0 2.3 2 0 0 2 2 2 0 3' exoribonuclease family, domain 1 Peptidase_M20 PF01546.28 gi|385802912|ref|YP_005839312.1| - 9.9e-21 74.4 2.3 1.1e-20 74.3 0.3 2.0 2 1 0 2 2 2 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|385802912|ref|YP_005839312.1| - 6.7e-19 67.8 0.0 1.2e-18 67.0 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain RNase_P_p30 PF01876.16 gi|385802913|ref|YP_005839313.1| - 1.4e-45 155.4 0.0 4.5e-45 153.8 0.0 1.7 1 1 0 1 1 1 1 RNase P subunit p30 Methyltransf_25 PF13649.6 gi|385802914|ref|YP_005839314.1| - 1.6e-15 57.5 0.1 2.9e-15 56.7 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|385802914|ref|YP_005839314.1| - 3.3e-12 46.9 0.0 7e-12 45.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|385802914|ref|YP_005839314.1| - 2.6e-11 43.6 0.1 3.6e-11 43.1 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|385802914|ref|YP_005839314.1| - 4.3e-09 36.1 0.2 7.4e-09 35.3 0.2 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|385802914|ref|YP_005839314.1| - 4.8e-08 33.7 0.1 7.7e-08 33.0 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|385802914|ref|YP_005839314.1| - 0.00014 21.8 0.0 0.00019 21.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|385802914|ref|YP_005839314.1| - 0.0013 18.2 0.1 0.0019 17.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 gi|385802914|ref|YP_005839314.1| - 0.0014 18.6 0.0 0.0027 17.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|385802914|ref|YP_005839314.1| - 0.0018 17.4 0.0 0.0024 17.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.14 gi|385802914|ref|YP_005839314.1| - 0.0028 17.2 0.2 0.0039 16.8 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_2 PF00891.18 gi|385802914|ref|YP_005839314.1| - 0.0029 16.9 0.0 0.0036 16.6 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_32 PF13679.6 gi|385802914|ref|YP_005839314.1| - 0.003 17.5 0.0 0.0042 17.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|385802914|ref|YP_005839314.1| - 0.022 13.8 0.0 0.028 13.5 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase AstE_AspA PF04952.14 gi|385802914|ref|YP_005839314.1| - 0.046 12.8 0.0 0.12 11.4 0.0 1.6 2 0 0 2 2 2 0 Succinylglutamate desuccinylase / Aspartoacylase family PCMT PF01135.19 gi|385802914|ref|YP_005839314.1| - 0.081 12.7 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) tRNA_U5-meth_tr PF05958.11 gi|385802914|ref|YP_005839314.1| - 0.15 11.0 0.0 0.21 10.5 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase CMAS PF02353.20 gi|385802914|ref|YP_005839314.1| - 0.18 11.0 0.0 0.27 10.5 0.0 1.3 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 gi|385802914|ref|YP_005839314.1| - 0.19 11.2 0.0 0.31 10.5 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase RNase_P_Rpp14 PF01900.19 gi|385802915|ref|YP_005839315.1| - 1.2e-19 70.4 0.0 1.7e-19 69.9 0.0 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family Proteasome PF00227.26 gi|385802916|ref|YP_005839316.1| - 8.9e-59 198.2 0.0 1.2e-58 197.8 0.0 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|385802916|ref|YP_005839316.1| - 8.4e-14 50.9 0.1 1.5e-13 50.1 0.1 1.5 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature MarR PF01047.22 gi|385802917|ref|YP_005839317.1| - 9.9e-06 25.4 0.0 1.3e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.12 gi|385802917|ref|YP_005839317.1| - 0.003 17.7 0.0 0.0041 17.3 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR_2 PF12802.7 gi|385802917|ref|YP_005839317.1| - 0.028 14.3 0.0 0.045 13.6 0.0 1.4 1 0 0 1 1 1 0 MarR family TANGO2 PF05742.12 gi|385802918|ref|YP_005839318.1| - 2.9e-29 102.9 0.0 3.7e-29 102.5 0.0 1.0 1 0 0 1 1 1 1 Transport and Golgi organisation 2 HTH_12 PF08461.10 gi|385802919|ref|YP_005839319.1| - 0.0058 16.5 0.0 0.012 15.5 0.0 1.7 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain PhosphMutase PF10143.9 gi|385802919|ref|YP_005839319.1| - 0.067 13.1 0.1 0.088 12.7 0.1 1.2 1 0 0 1 1 1 0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase HTH_15 PF12324.8 gi|385802919|ref|YP_005839319.1| - 0.076 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase Phage_rep_org_N PF09681.10 gi|385802919|ref|YP_005839319.1| - 0.081 12.9 0.0 0.13 12.2 0.0 1.5 1 1 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) Trp_halogenase PF04820.14 gi|385802920|ref|YP_005839320.1| - 3.7e-11 42.5 3.4 8.5e-08 31.5 0.0 2.3 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.24 gi|385802920|ref|YP_005839320.1| - 1.3e-09 37.7 3.3 1e-07 31.5 1.0 2.5 3 0 0 3 3 2 2 FAD binding domain FAD_binding_3 PF01494.19 gi|385802920|ref|YP_005839320.1| - 2.1e-08 33.8 2.2 2.1e-07 30.5 2.2 2.1 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|385802920|ref|YP_005839320.1| - 2.2e-08 33.9 6.7 0.00014 21.4 4.4 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase DAO PF01266.24 gi|385802920|ref|YP_005839320.1| - 5.1e-08 32.9 12.0 0.00028 20.6 0.8 2.9 3 0 0 3 3 3 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|385802920|ref|YP_005839320.1| - 4.6e-07 29.3 0.3 4.6e-07 29.3 0.3 1.8 2 0 0 2 2 1 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 gi|385802920|ref|YP_005839320.1| - 2.7e-06 26.8 11.3 1e-05 24.9 0.4 2.9 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|385802920|ref|YP_005839320.1| - 1.4e-05 24.4 3.3 1.6e-05 24.3 0.1 2.4 2 1 1 3 3 3 1 Thi4 family HI0933_like PF03486.14 gi|385802920|ref|YP_005839320.1| - 5e-05 22.2 1.4 5e-05 22.2 1.4 1.9 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|385802920|ref|YP_005839320.1| - 0.00013 22.1 6.7 0.00024 21.3 1.3 2.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|385802920|ref|YP_005839320.1| - 0.00036 21.0 10.3 0.011 16.2 0.7 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|385802920|ref|YP_005839320.1| - 0.00081 18.8 0.3 0.00081 18.8 0.3 2.7 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|385802920|ref|YP_005839320.1| - 0.0013 18.1 3.1 0.0034 16.7 1.1 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|385802920|ref|YP_005839320.1| - 0.011 14.8 7.3 0.016 14.2 1.4 2.5 3 0 0 3 3 3 0 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|385802920|ref|YP_005839320.1| - 0.016 15.1 0.1 0.029 14.2 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|385802920|ref|YP_005839320.1| - 0.019 14.6 0.1 0.042 13.5 0.1 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Amino_oxidase PF01593.24 gi|385802920|ref|YP_005839320.1| - 0.079 12.2 0.3 0.27 10.5 0.0 1.8 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Ferredoxin_N PF16947.5 gi|385802920|ref|YP_005839320.1| - 0.14 12.3 0.2 1.4 9.1 0.1 2.4 2 0 0 2 2 2 0 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding PGM_PMM_I PF02878.16 gi|385802921|ref|YP_005839321.1| - 9.9e-37 125.7 0.7 4.9e-35 120.2 0.1 2.4 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|385802921|ref|YP_005839321.1| - 6.4e-23 81.3 0.0 1.5e-22 80.1 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|385802921|ref|YP_005839321.1| - 4.7e-10 39.5 0.0 1.5e-09 37.9 0.0 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|385802921|ref|YP_005839321.1| - 0.034 14.4 0.0 0.071 13.3 0.0 1.6 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Acylphosphatase PF00708.18 gi|385802922|ref|YP_005839322.1| - 5.9e-26 90.7 0.0 6.6e-26 90.5 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase MDD_C PF18376.1 gi|385802924|ref|YP_005839324.1| - 2.1e-06 27.6 0.1 3.2e-06 27.0 0.1 1.2 1 0 0 1 1 1 1 Mevalonate 5-diphosphate decarboxylase C-terminal domain GHMP_kinases_N PF00288.26 gi|385802924|ref|YP_005839324.1| - 0.0001 22.5 6.6 0.003 17.8 5.0 2.5 1 1 1 2 2 2 2 GHMP kinases N terminal domain Pyr_redox_2 PF07992.14 gi|385802925|ref|YP_005839325.1| - 1.8e-23 83.2 0.7 2.5e-23 82.7 0.7 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|385802925|ref|YP_005839325.1| - 2.3e-11 44.1 0.1 2.3e-07 31.3 0.0 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|385802925|ref|YP_005839325.1| - 0.00038 20.6 0.1 2 8.7 0.0 3.4 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|385802925|ref|YP_005839325.1| - 0.00086 19.3 0.5 0.53 10.3 0.0 2.7 3 0 0 3 3 3 2 FAD-NAD(P)-binding TrkA_N PF02254.18 gi|385802925|ref|YP_005839325.1| - 0.0023 18.2 0.1 2.2 8.5 0.0 2.8 2 0 0 2 2 2 2 TrkA-N domain Lycopene_cycl PF05834.12 gi|385802925|ref|YP_005839325.1| - 0.0034 16.5 0.1 1.1 8.2 0.0 2.4 2 0 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.24 gi|385802925|ref|YP_005839325.1| - 0.004 16.8 0.9 0.29 10.6 0.2 2.7 3 0 0 3 3 3 1 FAD dependent oxidoreductase PI-PLC-C1 PF16670.5 gi|385802925|ref|YP_005839325.1| - 0.049 12.7 0.0 0.074 12.1 0.0 1.2 1 0 0 1 1 1 0 Phosphoinositide phospholipase C, Ca2+-dependent Thi4 PF01946.17 gi|385802925|ref|YP_005839325.1| - 0.064 12.5 0.3 2.6 7.2 0.1 2.4 2 0 0 2 2 2 0 Thi4 family UDPG_MGDP_dh_N PF03721.14 gi|385802925|ref|YP_005839325.1| - 0.068 12.7 0.8 0.12 12.0 0.0 1.9 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YscK PF06578.12 gi|385802925|ref|YP_005839325.1| - 0.14 11.7 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 YOP proteins translocation protein K (YscK) MGS PF02142.22 gi|385802926|ref|YP_005839326.1| - 3.3e-16 59.3 0.0 4.4e-16 58.8 0.0 1.2 1 0 0 1 1 1 1 MGS-like domain DUF371 PF04027.13 gi|385802927|ref|YP_005839327.1| - 2.3e-51 173.2 1.1 2.7e-51 173.0 1.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) Gp5_C PF06715.12 gi|385802927|ref|YP_005839327.1| - 2.5 8.4 5.8 1.7 9.0 0.2 3.3 3 0 0 3 3 3 0 Gp5 C-terminal repeat (3 copies) TPR_MLP1_2 PF07926.12 gi|385802928|ref|YP_005839328.1| - 0.0033 17.5 13.4 0.0033 17.5 13.4 4.1 2 1 1 3 3 3 1 TPR/MLP1/MLP2-like protein COG2 PF06148.11 gi|385802928|ref|YP_005839328.1| - 0.0064 16.6 2.9 0.0064 16.6 2.9 4.9 1 1 3 4 4 4 1 COG (conserved oligomeric Golgi) complex component, COG2 YtxH PF12732.7 gi|385802928|ref|YP_005839328.1| - 0.79 10.3 31.8 5 7.7 2.2 5.1 1 1 1 3 3 3 0 YtxH-like protein DUF948 PF06103.11 gi|385802928|ref|YP_005839328.1| - 4.6 7.6 22.2 1.4 9.2 1.9 3.9 1 1 3 4 4 4 0 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|385802928|ref|YP_005839328.1| - 6.3 6.8 36.5 1.7 8.6 11.3 4.0 1 1 4 5 5 5 0 Laminin Domain II DUF373 PF04123.13 gi|385802929|ref|YP_005839329.1| - 2.8e-110 368.9 8.0 3.2e-110 368.7 8.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF3185 PF11381.8 gi|385802929|ref|YP_005839329.1| - 0.0013 18.7 3.9 0.59 10.2 1.7 3.0 3 0 0 3 3 3 2 Protein of unknown function (DUF3185) YbjM PF11045.8 gi|385802929|ref|YP_005839329.1| - 0.22 11.7 2.0 0.43 10.8 0.6 2.1 2 0 0 2 2 2 0 Putative inner membrane protein of Enterobacteriaceae Aldo_ket_red PF00248.21 gi|385802931|ref|YP_005839331.1| - 8e-57 192.7 0.0 1e-54 185.7 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Trp_halogenase PF04820.14 gi|385802932|ref|YP_005839332.1| - 7.4e-14 51.5 4.1 3.8e-11 42.5 0.0 2.2 1 1 1 2 2 2 2 Tryptophan halogenase FAD_binding_3 PF01494.19 gi|385802932|ref|YP_005839332.1| - 1.9e-12 47.1 1.4 5.6e-12 45.6 1.4 1.7 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|385802932|ref|YP_005839332.1| - 1.8e-10 40.8 5.7 3.1e-10 40.0 5.7 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|385802932|ref|YP_005839332.1| - 1.1e-09 37.9 6.5 8.1e-05 21.9 3.6 2.6 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.24 gi|385802932|ref|YP_005839332.1| - 3.6e-08 33.4 7.9 3e-05 23.8 0.2 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|385802932|ref|YP_005839332.1| - 2.7e-07 30.0 0.2 4.3e-07 29.4 0.2 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|385802932|ref|YP_005839332.1| - 1.6e-05 23.8 2.5 0.00025 19.9 0.8 2.2 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|385802932|ref|YP_005839332.1| - 9.6e-05 21.7 0.4 9.6e-05 21.7 0.4 1.9 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|385802932|ref|YP_005839332.1| - 0.00061 20.3 1.7 1.2 9.7 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|385802932|ref|YP_005839332.1| - 0.0016 17.8 0.8 0.0058 15.9 0.2 2.0 2 0 0 2 2 2 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|385802932|ref|YP_005839332.1| - 0.0024 17.2 2.2 0.0064 15.8 0.1 2.2 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 gi|385802932|ref|YP_005839332.1| - 0.018 15.2 0.5 0.05 13.8 0.5 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|385802932|ref|YP_005839332.1| - 0.043 12.9 5.8 0.99 8.4 5.8 2.3 1 1 0 1 1 1 0 Lycopene cyclase protein GMC_oxred_N PF00732.19 gi|385802932|ref|YP_005839332.1| - 0.057 12.8 0.1 6.5 6.0 0.0 2.2 2 0 0 2 2 2 0 GMC oxidoreductase Pyr_redox_3 PF13738.6 gi|385802932|ref|YP_005839332.1| - 0.13 11.5 2.7 0.29 10.3 0.5 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase TPP_enzyme_C PF02775.21 gi|385802933|ref|YP_005839333.1| - 4.6e-31 107.7 0.2 8e-31 106.9 0.1 1.4 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|385802933|ref|YP_005839333.1| - 1.9e-16 59.9 0.7 3.6e-16 59.1 0.2 1.7 2 0 0 2 2 2 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.19 gi|385802934|ref|YP_005839334.1| - 2.8e-58 197.4 0.4 4.7e-58 196.7 0.4 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|385802934|ref|YP_005839334.1| - 2.2e-40 138.6 0.1 4.3e-40 137.6 0.1 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|385802934|ref|YP_005839334.1| - 7e-05 22.5 0.6 0.00017 21.3 0.2 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PFOR_II PF17147.4 gi|385802934|ref|YP_005839334.1| - 0.0025 18.1 0.0 0.0061 16.8 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II FAD_binding_6 PF00970.24 gi|385802935|ref|YP_005839335.1| - 7.9e-11 42.2 0.0 1.2e-10 41.6 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain FAD_binding_9 PF08021.11 gi|385802935|ref|YP_005839335.1| - 0.12 12.6 0.0 0.33 11.2 0.0 1.8 1 1 0 1 1 1 0 Siderophore-interacting FAD-binding domain AMP-binding PF00501.28 gi|385802936|ref|YP_005839336.1| - 6.1e-88 295.2 0.1 7.4e-88 295.0 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|385802936|ref|YP_005839336.1| - 5.5e-23 81.7 0.2 1.1e-22 80.7 0.2 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|385802936|ref|YP_005839336.1| - 4.3e-13 49.0 3.5 4.3e-13 49.0 3.5 2.1 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus MMPL PF03176.15 gi|385802937|ref|YP_005839337.1| - 4.9e-44 150.6 23.1 1.7e-22 79.8 9.0 2.5 2 0 0 2 2 2 2 MMPL family Patched PF02460.18 gi|385802937|ref|YP_005839337.1| - 2.4e-13 49.1 20.3 7.6e-08 30.9 7.5 2.2 2 0 0 2 2 2 2 Patched family Sterol-sensing PF12349.8 gi|385802937|ref|YP_005839337.1| - 9.7e-11 41.7 18.9 4e-07 30.0 0.5 3.3 3 0 0 3 3 3 2 Sterol-sensing domain of SREBP cleavage-activation ACR_tran PF00873.19 gi|385802937|ref|YP_005839337.1| - 5e-10 37.7 20.8 3.8e-05 21.6 8.9 2.4 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family NPCBM_assoc PF10633.9 gi|385802938|ref|YP_005839338.1| - 4.3e-20 71.8 10.4 9.5e-06 25.8 0.3 5.3 4 2 0 4 4 4 4 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|385802938|ref|YP_005839338.1| - 3e-18 66.0 12.9 9.5e-08 32.2 2.1 4.2 4 0 0 4 4 4 3 CARDB DUF11 PF01345.18 gi|385802938|ref|YP_005839338.1| - 3.1e-08 33.8 20.5 0.00011 22.4 1.2 5.3 4 3 0 4 4 4 3 Domain of unknown function DUF11 N_BRCA1_IG PF16158.5 gi|385802938|ref|YP_005839338.1| - 6.1e-07 30.1 0.1 0.037 14.8 0.0 3.0 3 0 0 3 3 3 2 Ig-like domain from next to BRCA1 gene TRAP_alpha PF03896.16 gi|385802938|ref|YP_005839338.1| - 2.4e-05 23.7 0.0 0.25 10.5 0.0 2.5 3 0 0 3 3 3 2 Translocon-associated protein (TRAP), alpha subunit Fn3-like PF14310.6 gi|385802938|ref|YP_005839338.1| - 0.00024 21.1 1.1 9.9 6.4 0.0 5.0 5 0 0 5 5 5 1 Fibronectin type III-like domain MG2 PF01835.19 gi|385802938|ref|YP_005839338.1| - 0.00034 21.0 0.9 2.4 8.6 0.1 4.4 3 1 2 5 5 5 1 MG2 domain Ig_GlcNase PF18368.1 gi|385802938|ref|YP_005839338.1| - 0.021 15.0 2.9 4.7 7.4 0.1 4.2 4 1 1 5 5 5 0 Exo-beta-D-glucosaminidase Ig-fold domain ASH PF15780.5 gi|385802938|ref|YP_005839338.1| - 0.053 13.7 4.0 4.4 7.6 0.1 3.5 2 1 2 4 4 4 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin DUF2393 PF09624.10 gi|385802938|ref|YP_005839338.1| - 0.11 12.4 0.1 12 5.9 0.0 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2393) TRAPPC9-Trs120 PF08626.11 gi|385802938|ref|YP_005839338.1| - 0.2 9.0 0.0 0.99 6.7 0.1 1.9 2 0 0 2 2 2 0 Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit HTH_24 PF13412.6 gi|385802939|ref|YP_005839339.1| - 1.2e-07 31.2 0.0 1.9e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|385802939|ref|YP_005839339.1| - 8.7e-06 25.5 0.1 1.2e-05 25.1 0.1 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|385802939|ref|YP_005839339.1| - 0.00023 20.7 0.2 0.00037 20.1 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|385802939|ref|YP_005839339.1| - 0.00077 19.5 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|385802939|ref|YP_005839339.1| - 0.0029 17.5 0.0 0.0033 17.3 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_Crp_2 PF13545.6 gi|385802939|ref|YP_005839339.1| - 0.0035 17.3 0.0 0.0041 17.1 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|385802939|ref|YP_005839339.1| - 0.0044 16.9 0.0 0.0064 16.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|385802939|ref|YP_005839339.1| - 0.0086 15.9 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.12 gi|385802939|ref|YP_005839339.1| - 0.0096 15.6 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 TrmB PF01978.19 gi|385802939|ref|YP_005839339.1| - 0.024 14.5 0.1 0.029 14.3 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|385802939|ref|YP_005839339.1| - 0.051 13.9 0.0 0.069 13.5 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator MMPL PF03176.15 gi|385802940|ref|YP_005839340.1| - 6.3e-34 117.4 21.1 6.4e-20 71.3 7.4 2.4 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|385802940|ref|YP_005839340.1| - 5e-10 39.4 4.4 2.3e-06 27.5 0.7 2.7 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.18 gi|385802940|ref|YP_005839340.1| - 2.5e-08 32.5 21.8 6.4e-08 31.2 7.5 2.2 2 0 0 2 2 2 2 Patched family DUF4131 PF13567.6 gi|385802940|ref|YP_005839340.1| - 0.14 11.8 0.0 0.14 11.8 0.0 4.4 5 0 0 5 5 5 0 Domain of unknown function (DUF4131) CARDB PF07705.11 gi|385802941|ref|YP_005839341.1| - 8.1e-11 42.1 15.2 0.00052 20.2 0.0 5.7 3 1 2 5 5 5 3 CARDB NPCBM_assoc PF10633.9 gi|385802941|ref|YP_005839341.1| - 1e-10 41.7 13.8 0.017 15.4 0.1 6.7 6 1 0 6 6 6 3 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF4832 PF16116.5 gi|385802941|ref|YP_005839341.1| - 5.8e-08 32.9 4.4 0.018 14.9 0.0 4.7 4 2 0 4 4 4 2 Domain of unknown function (DUF4832) DUF11 PF01345.18 gi|385802941|ref|YP_005839341.1| - 9.4e-08 32.3 17.2 0.011 16.0 0.1 5.3 4 3 0 4 4 4 2 Domain of unknown function DUF11 PHTB1_C PF14728.6 gi|385802941|ref|YP_005839341.1| - 0.00031 19.9 0.1 0.24 10.4 0.0 2.5 2 0 0 2 2 2 2 PTHB1 C-terminus DUF4232 PF14016.6 gi|385802941|ref|YP_005839341.1| - 0.00051 20.2 6.6 5.8 7.1 0.5 4.6 4 0 0 4 4 4 1 Protein of unknown function (DUF4232) TRAP_alpha PF03896.16 gi|385802941|ref|YP_005839341.1| - 0.0007 18.9 0.1 0.77 8.9 0.0 3.0 2 1 1 3 3 3 2 Translocon-associated protein (TRAP), alpha subunit NPL PF17800.1 gi|385802941|ref|YP_005839341.1| - 0.0067 17.0 0.4 1.1 9.9 0.0 3.0 2 1 1 3 3 3 1 Nucleoplasmin-like domain DUF1573 PF07610.11 gi|385802941|ref|YP_005839341.1| - 0.0069 16.4 4.9 1.7 8.7 0.1 4.7 5 1 0 5 5 5 1 Protein of unknown function (DUF1573) Inhibitor_I42 PF09394.10 gi|385802941|ref|YP_005839341.1| - 0.021 15.2 3.9 0.035 14.5 0.1 3.4 4 2 2 6 6 5 0 Chagasin family peptidase inhibitor I42 N_BRCA1_IG PF16158.5 gi|385802941|ref|YP_005839341.1| - 0.028 15.1 0.3 3.7 8.3 0.0 3.8 5 0 0 5 5 4 0 Ig-like domain from next to BRCA1 gene TRAP_beta PF05753.14 gi|385802941|ref|YP_005839341.1| - 0.12 11.8 0.1 2 7.8 0.0 2.7 2 0 0 2 2 2 0 Translocon-associated protein beta (TRAPB) DUF1081 PF06448.11 gi|385802941|ref|YP_005839341.1| - 0.31 11.4 5.2 14 6.2 0.7 2.9 3 1 0 3 3 2 0 Domain of Unknown Function (DUF1081) CoatB PF10389.9 gi|385802941|ref|YP_005839341.1| - 4.9 7.1 5.6 0.52 10.2 0.4 2.2 2 0 0 2 2 1 0 Bacteriophage coat protein B AAA PF00004.29 gi|385802942|ref|YP_005839342.1| - 1.2e-45 155.2 2.5 2.9e-45 153.9 0.1 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|385802942|ref|YP_005839342.1| - 2.6e-13 49.6 0.9 2.6e-13 49.6 0.9 2.2 2 0 0 2 2 2 1 AAA+ lid domain AAA_2 PF07724.14 gi|385802942|ref|YP_005839342.1| - 3.4e-09 37.1 0.0 1.1e-08 35.4 0.0 1.9 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|385802942|ref|YP_005839342.1| - 5.2e-07 29.5 0.0 1.7e-06 27.9 0.0 1.9 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|385802942|ref|YP_005839342.1| - 7.3e-07 29.3 1.2 4.9e-06 26.6 0.2 2.6 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|385802942|ref|YP_005839342.1| - 1e-06 29.3 0.9 0.00029 21.3 0.0 3.1 2 1 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|385802942|ref|YP_005839342.1| - 4.4e-06 27.0 0.3 0.00062 20.1 0.0 2.7 1 1 1 2 2 2 1 AAA domain DUF815 PF05673.13 gi|385802942|ref|YP_005839342.1| - 6.1e-05 22.3 0.0 0.00013 21.2 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_17 PF13207.6 gi|385802942|ref|YP_005839342.1| - 7.1e-05 23.3 4.6 0.065 13.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|385802942|ref|YP_005839342.1| - 0.00013 22.5 0.2 0.004 17.7 0.0 2.6 2 0 0 2 2 2 1 AAA domain GrpE PF01025.19 gi|385802942|ref|YP_005839342.1| - 0.00039 20.1 7.5 0.00097 18.8 7.5 1.6 1 0 0 1 1 1 1 GrpE AAA_14 PF13173.6 gi|385802942|ref|YP_005839342.1| - 0.00046 20.2 0.2 0.0028 17.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|385802942|ref|YP_005839342.1| - 0.00049 19.9 4.4 0.0044 16.8 0.1 3.2 3 2 0 3 3 3 1 AAA domain Sigma54_activat PF00158.26 gi|385802942|ref|YP_005839342.1| - 0.00057 19.6 0.1 0.025 14.3 0.1 2.8 1 1 0 1 1 1 1 Sigma-54 interaction domain GAS PF13851.6 gi|385802942|ref|YP_005839342.1| - 0.00062 19.2 6.7 0.0012 18.2 6.7 1.5 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding Mg_chelatase PF01078.21 gi|385802942|ref|YP_005839342.1| - 0.0011 18.4 0.2 0.0038 16.6 0.1 1.9 2 0 0 2 2 1 1 Magnesium chelatase, subunit ChlI Prot_ATP_ID_OB PF16450.5 gi|385802942|ref|YP_005839342.1| - 0.0011 18.8 0.2 0.0028 17.6 0.2 1.7 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain TIP49 PF06068.13 gi|385802942|ref|YP_005839342.1| - 0.0025 17.1 2.1 0.0045 16.2 0.0 2.2 2 1 0 2 2 2 1 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|385802942|ref|YP_005839342.1| - 0.0036 17.1 0.1 0.011 15.5 0.0 1.9 2 0 0 2 2 1 1 IstB-like ATP binding protein DUF4201 PF13870.6 gi|385802942|ref|YP_005839342.1| - 0.0036 17.1 6.2 0.0065 16.2 6.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4201) RNA_helicase PF00910.22 gi|385802942|ref|YP_005839342.1| - 0.0053 17.1 0.0 0.015 15.7 0.0 1.8 1 0 0 1 1 1 1 RNA helicase NTPase_1 PF03266.15 gi|385802942|ref|YP_005839342.1| - 0.0063 16.4 4.1 0.64 9.9 0.1 3.4 2 2 0 3 3 3 1 NTPase AAA_7 PF12775.7 gi|385802942|ref|YP_005839342.1| - 0.0076 15.8 0.4 0.025 14.1 0.0 2.1 2 1 0 2 2 2 1 P-loop containing dynein motor region AAA_33 PF13671.6 gi|385802942|ref|YP_005839342.1| - 0.0084 16.3 0.1 0.027 14.7 0.0 2.0 2 0 0 2 2 1 1 AAA domain NACHT PF05729.12 gi|385802942|ref|YP_005839342.1| - 0.0089 16.0 0.1 0.099 12.5 0.0 2.4 1 1 1 2 2 2 1 NACHT domain AAA_28 PF13521.6 gi|385802942|ref|YP_005839342.1| - 0.013 15.7 1.2 0.022 15.0 0.0 2.1 2 0 0 2 2 1 0 AAA domain ATPase_2 PF01637.18 gi|385802942|ref|YP_005839342.1| - 0.016 15.2 2.1 0.41 10.5 0.0 3.0 2 1 1 3 3 3 0 ATPase domain predominantly from Archaea Atg14 PF10186.9 gi|385802942|ref|YP_005839342.1| - 0.017 14.3 3.1 0.024 13.7 3.1 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 AAA_3 PF07726.11 gi|385802942|ref|YP_005839342.1| - 0.017 15.0 0.1 0.055 13.3 0.0 2.0 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) Cep57_CLD_2 PF14197.6 gi|385802942|ref|YP_005839342.1| - 0.018 15.1 10.8 0.044 13.9 10.8 1.6 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 Fungal_TACC PF12709.7 gi|385802942|ref|YP_005839342.1| - 0.019 15.4 3.6 0.056 13.9 3.6 1.8 1 0 0 1 1 1 0 Fungal Transforming acidic coiled-coil (TACC) proteins Parvo_NS1 PF01057.17 gi|385802942|ref|YP_005839342.1| - 0.027 13.6 0.0 0.058 12.5 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 TsaE PF02367.17 gi|385802942|ref|YP_005839342.1| - 0.029 14.4 0.0 0.057 13.4 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF4407 PF14362.6 gi|385802942|ref|YP_005839342.1| - 0.052 12.9 5.0 0.1 11.9 5.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) ATPase PF06745.13 gi|385802942|ref|YP_005839342.1| - 0.054 12.8 7.6 0.27 10.5 0.1 3.3 2 1 0 3 3 3 0 KaiC Sigma54_activ_2 PF14532.6 gi|385802942|ref|YP_005839342.1| - 0.062 13.4 0.1 0.24 11.5 0.0 2.0 2 0 0 2 2 1 0 Sigma-54 interaction domain DUF2334 PF10096.9 gi|385802942|ref|YP_005839342.1| - 0.07 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) Fmp27_WPPW PF10359.9 gi|385802942|ref|YP_005839342.1| - 0.073 11.9 7.0 0.13 11.1 7.0 1.4 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain AAA_25 PF13481.6 gi|385802942|ref|YP_005839342.1| - 0.11 12.1 10.5 0.22 11.1 0.1 3.7 3 1 0 4 4 4 0 AAA domain TUDOR PF00567.24 gi|385802942|ref|YP_005839342.1| - 0.11 12.5 0.0 0.26 11.3 0.0 1.6 1 0 0 1 1 1 0 Tudor domain ABC_tran PF00005.27 gi|385802942|ref|YP_005839342.1| - 0.21 12.1 5.1 0.24 11.9 0.0 2.7 2 1 0 2 2 1 0 ABC transporter APG6_N PF17675.1 gi|385802942|ref|YP_005839342.1| - 0.24 11.9 9.5 0.7 10.4 9.5 1.7 1 0 0 1 1 1 0 Apg6 coiled-coil region DUF3450 PF11932.8 gi|385802942|ref|YP_005839342.1| - 0.28 10.4 6.7 1.4 8.2 5.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) bZIP_1 PF00170.21 gi|385802942|ref|YP_005839342.1| - 0.28 11.3 11.5 0.81 9.8 1.3 2.7 1 1 1 2 2 2 0 bZIP transcription factor RapA_C PF12137.8 gi|385802942|ref|YP_005839342.1| - 0.36 9.8 8.6 0.55 9.2 5.0 2.6 2 1 1 3 3 3 0 RNA polymerase recycling family C-terminal DUF3987 PF13148.6 gi|385802942|ref|YP_005839342.1| - 1.4 7.8 6.0 2.7 6.9 4.7 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) AAA_11 PF13086.6 gi|385802942|ref|YP_005839342.1| - 2.3 8.0 10.2 0.39 10.4 0.1 2.4 1 1 1 2 2 2 0 AAA domain Csm1_N PF18504.1 gi|385802942|ref|YP_005839342.1| - 2.9 8.3 10.9 6.9 7.1 3.6 3.4 2 1 1 3 3 3 0 Csm1 N-terminal domain Macoilin PF09726.9 gi|385802942|ref|YP_005839342.1| - 3.2 6.2 7.4 4.4 5.7 7.4 1.2 1 0 0 1 1 1 0 Macoilin family Fez1 PF06818.15 gi|385802942|ref|YP_005839342.1| - 3.9 7.9 12.3 32 4.9 12.4 2.1 1 1 1 2 2 2 0 Fez1 HhH-GPD PF00730.25 gi|385802943|ref|YP_005839343.1| - 1.3e-23 83.5 0.0 4e-23 81.9 0.0 1.7 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|385802943|ref|YP_005839343.1| - 1.7e-10 40.2 0.0 5.9e-10 38.5 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|385802943|ref|YP_005839343.1| - 0.00068 20.2 0.1 0.045 14.4 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.9 gi|385802943|ref|YP_005839343.1| - 0.0073 16.6 3.0 0.014 15.7 3.0 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III PqqD PF05402.12 gi|385802943|ref|YP_005839343.1| - 0.051 13.9 0.7 2.1 8.7 0.4 2.6 3 0 0 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) 5_3_exonuc PF01367.20 gi|385802943|ref|YP_005839343.1| - 0.14 12.7 0.0 0.28 11.8 0.0 1.5 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold Zip PF02535.22 gi|385802945|ref|YP_005839345.1| - 0.12 11.5 0.1 9.3 5.4 0.0 2.2 2 0 0 2 2 2 0 ZIP Zinc transporter SCAMP PF04144.13 gi|385802945|ref|YP_005839345.1| - 0.16 12.2 2.1 0.22 11.8 2.1 1.1 1 0 0 1 1 1 0 SCAMP family DUF3951 PF13131.6 gi|385802945|ref|YP_005839345.1| - 0.34 11.1 2.5 0.74 10.1 2.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3951) ATG16 PF08614.11 gi|385802945|ref|YP_005839345.1| - 1.3 9.2 7.5 5.9 7.1 3.3 2.1 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) Copper-bind PF00127.20 gi|385802946|ref|YP_005839346.1| - 6.4e-13 49.0 0.1 1.5e-12 47.8 0.1 1.7 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family CytB6-F_Fe-S PF08802.10 gi|385802946|ref|YP_005839346.1| - 3.3 7.8 4.7 0.86 9.7 0.4 2.3 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit Mucin PF01456.17 gi|385802946|ref|YP_005839346.1| - 5.7 6.9 24.6 12 5.8 24.6 1.5 1 0 0 1 1 1 0 Mucin-like glycoprotein VMA21 PF09446.10 gi|385802947|ref|YP_005839347.1| - 0.18 11.9 8.6 0.093 12.8 2.2 2.1 1 1 1 2 2 2 0 VMA21-like domain Cytochrome_B PF00033.19 gi|385802948|ref|YP_005839348.1| - 9.6e-46 156.0 17.0 1.4e-45 155.5 17.0 1.2 1 0 0 1 1 1 1 Cytochrome b/b6/petB Cytochrom_B_N_2 PF13631.6 gi|385802948|ref|YP_005839348.1| - 6.2e-43 146.7 11.4 3.2e-42 144.4 10.5 2.0 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB DUF4405 PF14358.6 gi|385802948|ref|YP_005839348.1| - 9e-05 22.9 3.4 9e-05 22.9 3.4 2.9 2 1 0 2 2 2 1 Domain of unknown function (DUF4405) DUF373 PF04123.13 gi|385802948|ref|YP_005839348.1| - 0.28 10.6 5.1 0.36 10.2 4.7 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF373) Cytochrom_B_C PF00032.17 gi|385802949|ref|YP_005839349.1| - 1.5e-09 38.1 0.8 2.8e-09 37.2 0.8 1.5 1 0 0 1 1 1 1 Cytochrome b(C-terminal)/b6/petD MARVEL PF01284.23 gi|385802949|ref|YP_005839349.1| - 0.13 12.3 4.5 0.38 10.8 4.5 1.8 1 1 0 1 1 1 0 Membrane-associating domain Tnp_DNA_bind PF14706.6 gi|385802950|ref|YP_005839350.1| - 9.2e-23 79.9 0.0 1.6e-22 79.1 0.0 1.4 1 0 0 1 1 1 1 Transposase DNA-binding DDE_Tnp_1 PF01609.21 gi|385802950|ref|YP_005839350.1| - 9.8e-09 35.2 0.0 2.6e-08 33.8 0.0 1.7 1 1 1 2 2 2 1 Transposase DDE domain Dimer_Tnp_Tn5 PF02281.16 gi|385802950|ref|YP_005839350.1| - 1.1e-07 31.4 0.1 2.8e-07 30.2 0.1 1.8 1 1 0 1 1 1 1 Transposase Tn5 dimerisation domain DUF4064 PF13273.6 gi|385802952|ref|YP_005839352.1| - 0.032 14.5 0.9 0.037 14.3 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) TctB PF07331.11 gi|385802953|ref|YP_005839353.1| - 0.0051 17.1 2.5 0.0067 16.7 2.5 1.2 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family DUF202 PF02656.15 gi|385802953|ref|YP_005839353.1| - 0.059 13.8 5.2 9.2 6.8 4.7 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF202) Abhydrolase_6 PF12697.7 gi|385802954|ref|YP_005839354.1| - 3.9e-22 79.9 0.0 4.8e-22 79.7 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|385802954|ref|YP_005839354.1| - 4.8e-11 42.8 0.0 2.6e-08 33.8 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|385802954|ref|YP_005839354.1| - 5e-10 39.1 0.0 7.1e-10 38.6 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 MTH865 PF07747.11 gi|385802955|ref|YP_005839355.1| - 3.4e-28 97.2 0.1 3.9e-28 97.0 0.1 1.0 1 0 0 1 1 1 1 MTH865-like family Copper-bind PF00127.20 gi|385802956|ref|YP_005839356.1| - 1.9e-12 47.5 0.0 3.3e-12 46.7 0.0 1.4 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupin_3 PF05899.12 gi|385802956|ref|YP_005839356.1| - 0.036 13.7 0.3 0.071 12.8 0.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF861) TOBE_2 PF08402.10 gi|385802956|ref|YP_005839356.1| - 0.14 12.3 0.1 0.29 11.3 0.1 1.6 1 0 0 1 1 1 0 TOBE domain Glycos_transf_1 PF00534.20 gi|385802957|ref|YP_005839357.1| - 1.7e-16 60.2 0.0 2.8e-16 59.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|385802957|ref|YP_005839357.1| - 5.2e-12 46.5 2.2 5.2e-12 46.5 2.2 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.6 gi|385802957|ref|YP_005839357.1| - 7.1e-12 45.9 0.0 2.7e-11 44.0 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|385802957|ref|YP_005839357.1| - 5.6e-11 42.7 0.4 1.2e-10 41.7 0.4 1.6 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|385802957|ref|YP_005839357.1| - 9.5e-06 25.7 0.0 2.5e-05 24.3 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase 4-like PDDEXK_6 PF04720.12 gi|385802957|ref|YP_005839357.1| - 0.01 15.8 0.0 0.019 15.0 0.0 1.3 1 0 0 1 1 1 0 PDDEXK-like family of unknown function SMP PF04927.12 gi|385802957|ref|YP_005839357.1| - 0.044 14.3 0.1 0.34 11.4 0.0 2.4 2 0 0 2 2 2 0 Seed maturation protein DUF420 PF04238.12 gi|385802958|ref|YP_005839358.1| - 1.1e-35 122.8 7.1 1.1e-35 122.8 7.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.9 gi|385802958|ref|YP_005839358.1| - 0.0007 19.8 13.2 0.068 13.4 2.1 2.4 2 1 0 2 2 2 2 Predicted membrane protein (DUF2306) TctB PF07331.11 gi|385802958|ref|YP_005839358.1| - 0.0011 19.3 8.6 0.0011 19.3 8.6 2.2 1 1 0 2 2 2 1 Tripartite tricarboxylate transporter TctB family Orai-1 PF07856.12 gi|385802958|ref|YP_005839358.1| - 0.31 10.7 9.6 0.015 15.0 2.9 2.1 2 1 1 3 3 3 0 Mediator of CRAC channel activity PGG PF13962.6 gi|385802958|ref|YP_005839358.1| - 0.61 9.9 6.5 1.3 8.9 0.7 2.7 2 1 0 3 3 3 0 Domain of unknown function Phage_holin_3_6 PF07332.11 gi|385802958|ref|YP_005839358.1| - 0.66 10.0 12.6 0.76 9.8 0.4 3.0 1 1 2 3 3 3 0 Putative Actinobacterial Holin-X, holin superfamily III DUF4029 PF13221.6 gi|385802958|ref|YP_005839358.1| - 0.72 10.5 5.4 0.36 11.5 0.5 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF4029) DUF2231 PF09990.9 gi|385802958|ref|YP_005839358.1| - 0.79 10.2 14.1 0.1 13.1 4.4 2.9 2 2 0 2 2 2 0 Predicted membrane protein (DUF2231) YesK PF14150.6 gi|385802958|ref|YP_005839358.1| - 9.4 6.5 20.6 0.47 10.7 0.5 3.9 4 0 0 4 4 4 0 YesK-like protein Fe-ADH_2 PF13685.6 gi|385802959|ref|YP_005839359.1| - 6.8e-60 202.8 2.2 8.4e-60 202.6 2.2 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|385802959|ref|YP_005839359.1| - 3.5e-21 75.4 6.2 1.7e-20 73.2 6.2 1.8 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|385802959|ref|YP_005839359.1| - 2.5e-08 33.4 0.1 6.5e-08 32.0 0.1 1.6 1 1 0 1 1 1 1 3-dehydroquinate synthase CCDC50_N PF15295.6 gi|385802959|ref|YP_005839359.1| - 0.068 13.3 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 50 N-terminus LysE PF01810.18 gi|385802960|ref|YP_005839360.1| - 1.4e-22 80.1 12.0 1.9e-20 73.2 12.0 2.3 1 1 0 1 1 1 1 LysE type translocator Wzy_C PF04932.15 gi|385802960|ref|YP_005839360.1| - 7 6.3 20.2 7.3 6.2 8.9 2.7 2 1 0 2 2 2 0 O-Antigen ligase UPF0016 PF01169.19 gi|385802961|ref|YP_005839361.1| - 4.2e-25 87.9 17.4 3.2e-14 53.0 3.6 2.3 2 0 0 2 2 2 2 Uncharacterized protein family UPF0016 Fe_dep_repr_C PF02742.15 gi|385802962|ref|YP_005839362.1| - 8.8e-27 93.0 0.1 1.8e-26 92.0 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain FeoA PF04023.14 gi|385802962|ref|YP_005839362.1| - 3.8e-16 59.1 0.1 1.2e-15 57.5 0.1 1.9 1 0 0 1 1 1 1 FeoA domain Fe_dep_repress PF01325.19 gi|385802962|ref|YP_005839362.1| - 1e-14 54.4 0.3 1.8e-14 53.6 0.3 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HrcA_DNA-bdg PF03444.15 gi|385802962|ref|YP_005839362.1| - 0.048 13.3 0.0 0.2 11.3 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding MarR_2 PF12802.7 gi|385802962|ref|YP_005839362.1| - 0.052 13.4 0.0 0.92 9.4 0.0 2.5 2 1 1 3 3 3 0 MarR family HTH_IclR PF09339.10 gi|385802962|ref|YP_005839362.1| - 0.14 11.9 0.2 3.6 7.4 0.0 2.4 2 0 0 2 2 2 0 IclR helix-turn-helix domain PALP PF00291.25 gi|385802963|ref|YP_005839363.1| - 4.7e-66 223.2 6.4 5.4e-66 223.0 6.4 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Amino_oxidase PF01593.24 gi|385802964|ref|YP_005839364.1| - 3.4e-43 148.6 0.4 1.5e-42 146.5 0.4 1.8 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|385802964|ref|YP_005839364.1| - 4.5e-16 58.8 0.4 9.8e-16 57.7 0.4 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|385802964|ref|YP_005839364.1| - 7.2e-11 42.3 5.9 1.1e-09 38.4 5.9 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|385802964|ref|YP_005839364.1| - 1.8e-08 34.0 1.1 9.1e-06 25.1 0.0 2.6 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|385802964|ref|YP_005839364.1| - 3.9e-08 32.4 0.9 2.6e-05 23.1 0.2 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|385802964|ref|YP_005839364.1| - 7e-06 25.4 1.9 1.3e-05 24.5 1.9 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|385802964|ref|YP_005839364.1| - 2.4e-05 23.7 1.3 0.069 12.4 0.5 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|385802964|ref|YP_005839364.1| - 0.00011 21.6 0.7 0.0002 20.8 0.7 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.7 gi|385802964|ref|YP_005839364.1| - 0.00014 21.3 9.8 0.0012 18.3 5.1 2.9 2 1 0 3 3 3 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|385802964|ref|YP_005839364.1| - 0.00017 20.8 1.0 0.00017 20.8 1.0 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|385802964|ref|YP_005839364.1| - 0.0003 20.1 0.2 0.00052 19.3 0.2 1.3 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.19 gi|385802964|ref|YP_005839364.1| - 0.00043 19.6 0.5 0.0011 18.3 0.5 1.6 1 0 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.6 gi|385802964|ref|YP_005839364.1| - 0.00069 19.6 3.6 0.14 12.1 0.5 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox PF00070.27 gi|385802964|ref|YP_005839364.1| - 0.0019 18.7 1.1 0.0052 17.3 0.5 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|385802964|ref|YP_005839364.1| - 0.0094 16.4 0.3 0.065 13.7 0.0 2.2 2 0 0 2 2 2 1 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|385802964|ref|YP_005839364.1| - 0.01 15.7 0.7 0.022 14.6 0.7 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MCRA PF06100.11 gi|385802964|ref|YP_005839364.1| - 0.022 13.6 0.0 0.036 12.9 0.0 1.3 1 0 0 1 1 1 0 MCRA family FMO-like PF00743.19 gi|385802964|ref|YP_005839364.1| - 0.029 12.8 0.0 0.051 12.0 0.0 1.3 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like Lycopene_cycl PF05834.12 gi|385802964|ref|YP_005839364.1| - 0.05 12.7 0.5 0.091 11.8 0.5 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Shikimate_DH PF01488.20 gi|385802964|ref|YP_005839364.1| - 0.056 13.5 0.1 0.13 12.3 0.1 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|385802964|ref|YP_005839364.1| - 0.057 13.4 0.1 0.22 11.5 0.1 1.9 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YjeF_N PF03853.15 gi|385802964|ref|YP_005839364.1| - 0.064 13.1 0.2 0.11 12.3 0.2 1.4 1 0 0 1 1 1 0 YjeF-related protein N-terminus adh_short_C2 PF13561.6 gi|385802965|ref|YP_005839365.1| - 2.1e-53 181.3 0.0 2.6e-53 181.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|385802965|ref|YP_005839365.1| - 2.6e-41 141.2 0.0 3e-41 141.0 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|385802965|ref|YP_005839365.1| - 3e-09 37.1 0.0 7.4e-08 32.5 0.0 2.1 2 0 0 2 2 2 1 KR domain Epimerase PF01370.21 gi|385802965|ref|YP_005839365.1| - 0.00049 19.6 0.0 0.00068 19.2 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Pyr_redox PF00070.27 gi|385802965|ref|YP_005839365.1| - 0.018 15.6 0.0 0.047 14.2 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|385802965|ref|YP_005839365.1| - 0.085 12.1 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain Metallophos PF00149.28 gi|385802966|ref|YP_005839366.1| - 2.9e-10 41.0 0.0 4.9e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|385802966|ref|YP_005839366.1| - 3.3e-07 30.7 0.3 6.2e-07 29.7 0.3 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain MarR_2 PF12802.7 gi|385802967|ref|YP_005839367.1| - 2.2e-10 40.3 0.2 5.6e-10 39.0 0.2 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|385802967|ref|YP_005839367.1| - 6.9e-10 38.3 0.0 1.2e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|385802967|ref|YP_005839367.1| - 1e-07 31.8 0.0 2.5e-07 30.5 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|385802967|ref|YP_005839367.1| - 1.2e-06 28.9 0.1 4.7e-05 23.8 0.0 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|385802967|ref|YP_005839367.1| - 8.6e-05 22.4 0.0 0.00021 21.2 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_45 PF14947.6 gi|385802967|ref|YP_005839367.1| - 0.00024 21.0 0.0 0.00078 19.4 0.0 1.9 1 1 1 2 2 2 1 Winged helix-turn-helix HTH_11 PF08279.12 gi|385802967|ref|YP_005839367.1| - 0.00051 19.9 0.1 0.0011 18.8 0.0 1.6 2 0 0 2 2 1 1 HTH domain HTH_5 PF01022.20 gi|385802967|ref|YP_005839367.1| - 0.0007 19.4 0.0 0.0012 18.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|385802967|ref|YP_005839367.1| - 0.00096 18.9 0.0 0.0019 18.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|385802967|ref|YP_005839367.1| - 0.0033 17.3 0.1 0.006 16.5 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|385802967|ref|YP_005839367.1| - 0.01 16.2 0.0 0.034 14.5 0.0 1.8 2 0 0 2 2 1 0 Transcriptional regulator Fe_dep_repress PF01325.19 gi|385802967|ref|YP_005839367.1| - 0.011 15.9 0.0 0.022 15.0 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Mrr_N PF14338.6 gi|385802967|ref|YP_005839367.1| - 0.021 14.9 0.0 0.068 13.3 0.0 1.7 1 1 0 1 1 1 0 Mrr N-terminal domain LacI PF00356.21 gi|385802967|ref|YP_005839367.1| - 0.021 14.6 0.1 0.06 13.2 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_28 PF13518.6 gi|385802967|ref|YP_005839367.1| - 0.033 14.3 0.1 0.064 13.4 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4364 PF14277.6 gi|385802967|ref|YP_005839367.1| - 0.042 13.6 0.0 0.07 12.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Mnd1 PF03962.15 gi|385802967|ref|YP_005839367.1| - 0.046 14.0 0.0 0.12 12.6 0.0 1.7 1 0 0 1 1 1 0 Mnd1 HTH domain HTH_23 PF13384.6 gi|385802967|ref|YP_005839367.1| - 0.089 12.6 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain DUF948 PF06103.11 gi|385802967|ref|YP_005839367.1| - 0.095 13.0 1.5 17 5.8 0.0 2.6 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) FaeA PF04703.12 gi|385802967|ref|YP_005839367.1| - 0.098 13.0 0.1 0.26 11.7 0.1 1.6 1 0 0 1 1 1 0 FaeA-like protein GntR PF00392.21 gi|385802967|ref|YP_005839367.1| - 0.12 12.1 0.0 0.29 10.8 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_34 PF13601.6 gi|385802967|ref|YP_005839367.1| - 0.12 12.6 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF3387 PF11867.8 gi|385802967|ref|YP_005839367.1| - 0.13 11.6 0.0 0.19 11.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3387) TetR_C_7 PF14246.6 gi|385802967|ref|YP_005839367.1| - 0.13 12.3 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 AefR-like transcriptional repressor, C-terminal domain NMD3 PF04981.13 gi|385802967|ref|YP_005839367.1| - 0.2 11.1 0.0 0.31 10.5 0.0 1.2 1 0 0 1 1 1 0 NMD3 family DnaJ PF00226.31 gi|385802968|ref|YP_005839368.1| - 7.9e-10 38.7 0.1 1.5e-09 37.9 0.1 1.4 1 0 0 1 1 1 1 DnaJ domain PPDK_N PF01326.19 gi|385802969|ref|YP_005839369.1| - 3.8e-105 351.8 1.0 5.5e-105 351.3 1.0 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|385802969|ref|YP_005839369.1| - 2.7e-83 279.5 0.1 4.1e-83 278.9 0.1 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|385802969|ref|YP_005839369.1| - 3e-26 90.9 2.6 7.3e-26 89.7 2.6 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PEP-utilisers_N PF05524.13 gi|385802969|ref|YP_005839369.1| - 0.021 15.0 1.2 5.6 7.2 0.0 3.8 4 0 0 4 4 4 0 PEP-utilising enzyme, N-terminal Radical_SAM PF04055.21 gi|385802969|ref|YP_005839369.1| - 0.12 12.8 0.2 0.81 10.0 0.0 2.5 2 1 1 3 3 3 0 Radical SAM superfamily SNARE_assoc PF09335.11 gi|385802970|ref|YP_005839370.1| - 8.4e-10 39.2 1.3 8.4e-10 39.2 1.3 1.8 1 1 1 2 2 2 1 SNARE associated Golgi protein tRNA-synt_1g PF09334.11 gi|385802971|ref|YP_005839371.1| - 2.3e-139 464.5 0.0 7.1e-98 327.9 0.0 2.1 1 1 1 2 2 2 2 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|385802971|ref|YP_005839371.1| - 4.9e-20 71.4 0.0 8.2e-20 70.7 0.0 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|385802971|ref|YP_005839371.1| - 3.9e-14 51.8 0.0 6.8e-08 31.2 0.0 3.3 3 1 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|385802971|ref|YP_005839371.1| - 1.6e-10 40.8 0.0 3.1e-07 30.0 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 gi|385802971|ref|YP_005839371.1| - 1.6e-08 34.7 0.0 3e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|385802971|ref|YP_005839371.1| - 0.0062 15.5 0.0 0.34 9.8 0.0 2.8 2 1 0 3 3 3 1 tRNA synthetases class I (K) Mpt_N PF09176.11 gi|385802971|ref|YP_005839371.1| - 0.039 14.1 0.0 0.1 12.7 0.0 1.7 1 0 0 1 1 1 0 Methylene-tetrahydromethanopterin dehydrogenase, N-terminal PK PF00224.21 gi|385802972|ref|YP_005839372.1| - 1.4e-110 369.4 6.6 2.1e-110 368.9 6.6 1.2 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|385802972|ref|YP_005839372.1| - 1.1e-31 109.5 0.6 3e-31 108.1 0.3 1.9 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.23 gi|385802972|ref|YP_005839372.1| - 9.9e-10 38.0 2.4 5.1e-09 35.7 0.1 3.4 3 0 0 3 3 3 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 gi|385802972|ref|YP_005839372.1| - 0.01 15.0 2.4 0.029 13.5 2.1 1.8 1 1 1 2 2 2 0 HpcH/HpaI aldolase/citrate lyase family Trypan_PARP PF05887.11 gi|385802973|ref|YP_005839373.1| - 0.03 14.3 3.5 0.036 14.0 3.5 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) NfeD PF01957.18 gi|385802974|ref|YP_005839374.1| - 4.7e-07 30.1 0.0 8.7e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding DUF533 PF04391.12 gi|385802974|ref|YP_005839374.1| - 0.067 12.8 0.2 0.16 11.5 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF533) Trypan_PARP PF05887.11 gi|385802974|ref|YP_005839374.1| - 2.7 8.0 11.2 4.8 7.2 11.2 1.4 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) Pes-10 PF07149.11 gi|385802974|ref|YP_005839374.1| - 3 6.8 5.8 4.3 6.3 5.8 1.1 1 0 0 1 1 1 0 Pes-10 TMEM238 PF15125.6 gi|385802974|ref|YP_005839374.1| - 3.3 8.0 6.3 6.2 7.1 6.3 1.4 1 0 0 1 1 1 0 TMEM238 protein family Pex14_N PF04695.13 gi|385802974|ref|YP_005839374.1| - 3.4 8.3 8.0 7.2 7.2 8.0 1.5 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region TssN PF17555.2 gi|385802975|ref|YP_005839375.1| - 3.4 7.0 6.6 0.25 10.7 0.7 1.9 2 0 0 2 2 2 0 Type VI secretion system, TssN UbiA PF01040.18 gi|385802976|ref|YP_005839376.1| - 1.1e-52 178.8 21.9 1.1e-52 178.8 21.9 2.7 2 1 0 2 2 2 1 UbiA prenyltransferase family COX15-CtaA PF02628.15 gi|385802976|ref|YP_005839376.1| - 0.00019 20.7 3.2 0.00019 20.7 3.2 4.1 2 2 2 4 4 4 2 Cytochrome oxidase assembly protein FtsX PF02687.21 gi|385802976|ref|YP_005839376.1| - 0.36 11.3 0.1 0.36 11.3 0.1 4.7 3 1 2 5 5 5 0 FtsX-like permease family COX2 PF00116.20 gi|385802977|ref|YP_005839377.1| - 9.9e-19 67.4 2.3 2.1e-17 63.1 0.2 2.3 1 1 1 2 2 2 2 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.15 gi|385802977|ref|YP_005839377.1| - 6.6e-13 48.6 0.1 1.1e-12 47.9 0.1 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain CTP_transf_like PF01467.26 gi|385802978|ref|YP_005839378.1| - 1.8e-12 47.7 0.1 2e-12 47.5 0.1 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|385802978|ref|YP_005839378.1| - 0.016 15.1 0.0 0.052 13.4 0.0 1.8 2 0 0 2 2 2 0 FAD synthetase Prok-JAB PF14464.6 gi|385802979|ref|YP_005839379.1| - 7.6e-11 41.8 0.1 1.2e-10 41.2 0.1 1.4 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|385802979|ref|YP_005839379.1| - 0.00081 19.3 0.1 0.0021 18.0 0.0 1.8 2 0 0 2 2 2 1 RadC-like JAB domain tRNA_anti-codon PF01336.25 gi|385802980|ref|YP_005839380.1| - 3.1e-07 30.3 0.1 6.2e-07 29.3 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|385802980|ref|YP_005839380.1| - 0.00016 22.0 1.4 0.00058 20.2 0.1 2.2 2 0 0 2 2 2 1 S1 RNA binding domain DHH PF01368.20 gi|385802980|ref|YP_005839380.1| - 0.0021 18.2 0.4 0.0045 17.2 0.4 1.6 1 0 0 1 1 1 1 DHH family RecA_dep_nuc PF16786.5 gi|385802980|ref|YP_005839380.1| - 0.11 12.6 0.0 0.28 11.4 0.0 1.6 1 0 0 1 1 1 0 Recombination enhancement, RecA-dependent nuclease Nitroreductase PF00881.24 gi|385802981|ref|YP_005839381.1| - 2.3e-19 70.1 0.8 1.5e-09 38.2 0.1 2.1 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|385802981|ref|YP_005839381.1| - 6.3e-09 35.7 0.0 0.00045 19.8 0.0 2.1 1 1 0 2 2 2 2 Putative TM nitroreductase Sigma70_r4_2 PF08281.12 gi|385802981|ref|YP_005839381.1| - 0.086 12.5 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 PLDc_2 PF13091.6 gi|385802982|ref|YP_005839382.1| - 9.8e-38 129.0 0.0 3.6e-21 75.5 0.0 2.3 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|385802982|ref|YP_005839382.1| - 9.1e-07 28.8 0.4 1.7e-05 24.7 0.1 2.7 2 0 0 2 2 2 1 Phospholipase D Active site motif HEAT_2 PF13646.6 gi|385802983|ref|YP_005839383.1| - 1.3e-20 73.6 3.6 8.7e-11 42.1 2.7 3.5 1 1 2 3 3 3 2 HEAT repeats HEAT_PBS PF03130.16 gi|385802983|ref|YP_005839383.1| - 6.8e-13 48.0 10.4 0.0072 16.9 0.1 6.4 6 1 0 6 6 6 3 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|385802983|ref|YP_005839383.1| - 1.3e-06 28.8 0.2 0.00055 20.4 0.1 3.5 3 0 0 3 3 3 1 HEAT-like repeat HEAT PF02985.22 gi|385802983|ref|YP_005839383.1| - 1.9e-05 24.5 0.0 0.0089 16.2 0.0 4.1 4 0 0 4 4 4 1 HEAT repeat Arm PF00514.23 gi|385802983|ref|YP_005839383.1| - 0.00014 21.7 0.0 0.018 15.0 0.0 3.2 4 0 0 4 4 4 1 Armadillo/beta-catenin-like repeat DNA_alkylation PF08713.11 gi|385802983|ref|YP_005839383.1| - 0.019 14.7 0.4 0.084 12.6 0.0 2.2 2 0 0 2 2 2 0 DNA alkylation repair enzyme Pox_A_type_inc PF04508.12 gi|385802983|ref|YP_005839383.1| - 0.4 10.6 2.5 1.3 9.0 2.5 1.9 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat HSBP1 PF06825.12 gi|385802983|ref|YP_005839383.1| - 0.43 10.5 4.4 16 5.4 0.7 3.3 2 1 0 2 2 2 0 Heat shock factor binding protein 1 DUF948 PF06103.11 gi|385802983|ref|YP_005839383.1| - 1.2 9.5 6.0 1.9 8.8 0.5 3.3 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF948) Peripla_BP_2 PF01497.18 gi|385802984|ref|YP_005839384.1| - 1.4e-11 44.4 0.0 2.3e-11 43.7 0.0 1.3 1 1 0 1 1 1 1 Periplasmic binding protein Ferritin PF00210.24 gi|385802985|ref|YP_005839385.1| - 8.7e-32 110.0 2.6 1e-31 109.8 2.6 1.0 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.10 gi|385802985|ref|YP_005839385.1| - 0.0011 19.2 0.4 0.026 14.9 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) Rab5-bind PF09311.11 gi|385802985|ref|YP_005839385.1| - 0.15 11.4 1.9 0.68 9.3 0.3 2.1 2 0 0 2 2 2 0 Rabaptin-like protein OB_aCoA_assoc PF01796.17 gi|385802988|ref|YP_005839388.1| - 0.00027 20.9 0.3 0.00044 20.2 0.3 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated Thiolase_N PF00108.23 gi|385802989|ref|YP_005839389.1| - 4.6e-55 186.8 0.0 7e-55 186.2 0.0 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|385802989|ref|YP_005839389.1| - 4.4e-08 32.8 0.1 1.3e-07 31.3 0.1 1.7 2 0 0 2 2 2 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.22 gi|385802989|ref|YP_005839389.1| - 0.00088 19.3 0.6 4.9 7.2 0.0 3.3 3 0 0 3 3 3 2 Beta-ketoacyl synthase, C-terminal domain Pyr_redox_2 PF07992.14 gi|385802991|ref|YP_005839391.1| - 4.1e-31 108.3 0.0 5.4e-31 107.9 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|385802991|ref|YP_005839391.1| - 7.5e-14 51.7 0.0 5.1e-09 35.8 0.0 2.5 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|385802991|ref|YP_005839391.1| - 4.2e-06 27.2 0.0 0.0038 17.7 0.1 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|385802991|ref|YP_005839391.1| - 4.8e-06 25.9 2.1 0.00092 18.4 0.7 2.2 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|385802991|ref|YP_005839391.1| - 2.6e-05 24.0 1.1 0.0037 16.9 0.4 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|385802991|ref|YP_005839391.1| - 3e-05 23.3 0.5 0.00028 20.1 0.4 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|385802991|ref|YP_005839391.1| - 0.00026 20.5 0.6 0.00026 20.5 0.6 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|385802991|ref|YP_005839391.1| - 0.00031 19.6 0.2 0.0056 15.4 0.3 2.2 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|385802991|ref|YP_005839391.1| - 0.0011 18.3 0.4 0.0018 17.6 0.4 1.3 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.21 gi|385802991|ref|YP_005839391.1| - 0.0044 16.4 0.3 0.012 15.0 0.3 1.7 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.6 gi|385802991|ref|YP_005839391.1| - 0.0076 16.2 0.2 0.21 11.6 0.0 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding K_oxygenase PF13434.6 gi|385802991|ref|YP_005839391.1| - 0.0077 15.4 0.0 0.027 13.6 0.0 1.7 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.6 gi|385802991|ref|YP_005839391.1| - 0.013 15.7 0.4 0.029 14.6 0.4 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|385802991|ref|YP_005839391.1| - 0.016 14.5 0.1 0.031 13.5 0.1 1.5 1 0 0 1 1 1 0 Thi4 family DUF5305 PF17231.2 gi|385802992|ref|YP_005839392.1| - 8.1e-30 103.9 0.1 1.8e-28 99.5 0.0 2.6 2 0 0 2 2 2 1 Family of unknown function (DUF5305) baeRF_family12 PF18856.1 gi|385802992|ref|YP_005839392.1| - 0.84 10.2 3.6 1.6 9.3 3.6 1.4 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 12 Peptidase_S24 PF00717.23 gi|385802993|ref|YP_005839393.1| - 0.00073 19.4 0.0 0.0032 17.4 0.0 2.1 3 0 0 3 3 3 1 Peptidase S24-like CARDB PF07705.11 gi|385802994|ref|YP_005839394.1| - 1.5e-10 41.2 68.7 0.00012 22.3 2.1 8.5 8 1 0 8 8 8 5 CARDB DUF4832 PF16116.5 gi|385802994|ref|YP_005839394.1| - 0.0032 17.4 6.4 0.92 9.3 0.1 3.9 4 0 0 4 4 4 2 Domain of unknown function (DUF4832) PGF-CTERM PF18204.1 gi|385802994|ref|YP_005839394.1| - 3.9 7.6 9.5 0.064 13.3 2.3 1.9 2 0 0 2 2 2 0 PGF-CTERM motif TRAP_beta PF05753.14 gi|385802994|ref|YP_005839394.1| - 4.5 6.6 6.5 7 6.0 0.1 3.7 4 0 0 4 4 4 0 Translocon-associated protein beta (TRAPB) CARDB PF07705.11 gi|385802995|ref|YP_005839395.1| - 2.5e-08 34.1 20.0 0.0002 21.5 1.2 5.5 6 1 0 6 6 6 3 CARDB Peptidase_M73 PF12389.8 gi|385802995|ref|YP_005839395.1| - 0.00041 20.2 0.2 0.0073 16.2 0.1 2.5 2 0 0 2 2 2 1 Camelysin metallo-endopeptidase ProQ_C PF17516.2 gi|385802995|ref|YP_005839395.1| - 0.023 14.1 0.1 36 3.9 0.0 3.8 3 0 0 3 3 3 0 ProQ C-terminal domain DUF2393 PF09624.10 gi|385802995|ref|YP_005839395.1| - 0.037 14.0 0.0 0.58 10.1 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2393) DUF3123 PF11321.8 gi|385802995|ref|YP_005839395.1| - 0.092 13.4 0.8 0.25 12.0 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3123) Kelch_1 PF01344.25 gi|385802995|ref|YP_005839395.1| - 0.12 11.9 0.2 0.3 10.7 0.2 1.6 1 0 0 1 1 1 0 Kelch motif DUF3992 PF13157.6 gi|385802995|ref|YP_005839395.1| - 0.45 11.3 10.5 0.7 10.7 0.2 3.7 2 1 0 3 3 3 0 Protein of unknown function (DUF3992) PEGA PF08308.11 gi|385802995|ref|YP_005839395.1| - 0.5 10.3 2.9 32 4.5 0.0 3.5 5 0 0 5 5 5 0 PEGA domain LRR_6 PF13516.6 gi|385802996|ref|YP_005839396.1| - 0.66 10.2 5.6 14 6.0 0.1 4.5 4 0 0 4 4 4 0 Leucine Rich repeat Methyltransf_11 PF08241.12 gi|385802999|ref|YP_005839399.1| - 9e-17 61.5 0.0 1.3e-16 61.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|385802999|ref|YP_005839399.1| - 1.2e-16 61.2 0.0 2e-16 60.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|385802999|ref|YP_005839399.1| - 2.5e-12 46.8 0.0 3.6e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|385802999|ref|YP_005839399.1| - 4e-10 40.3 0.0 7e-10 39.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|385802999|ref|YP_005839399.1| - 5.7e-08 32.4 0.0 7.3e-08 32.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|385802999|ref|YP_005839399.1| - 1.3e-07 31.6 0.0 1.5e-07 31.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|385802999|ref|YP_005839399.1| - 9.2e-05 22.0 0.0 0.00013 21.5 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_18 PF12847.7 gi|385802999|ref|YP_005839399.1| - 0.00038 20.4 0.0 0.00063 19.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|385802999|ref|YP_005839399.1| - 0.0011 18.7 0.0 0.0017 18.1 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_5 PF01795.19 gi|385802999|ref|YP_005839399.1| - 0.0032 17.0 0.0 0.0063 16.0 0.0 1.4 2 0 0 2 2 2 1 MraW methylase family CMAS PF02353.20 gi|385802999|ref|YP_005839399.1| - 0.0058 16.0 0.0 0.0085 15.4 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|385802999|ref|YP_005839399.1| - 0.0082 16.1 0.0 0.011 15.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|385802999|ref|YP_005839399.1| - 0.014 15.2 0.0 0.22 11.4 0.0 2.0 1 1 0 1 1 1 0 Hypothetical methyltransferase MTS PF05175.14 gi|385802999|ref|YP_005839399.1| - 0.054 13.1 0.0 0.073 12.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_33 PF10017.9 gi|385802999|ref|YP_005839399.1| - 0.16 11.1 0.0 0.4 9.8 0.0 1.7 1 1 1 2 2 2 0 Histidine-specific methyltransferase, SAM-dependent Zn_Tnp_IS1595 PF12760.7 gi|385803000|ref|YP_005839400.1| - 0.00054 19.9 0.1 0.95 9.5 0.0 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|385803000|ref|YP_005839400.1| - 0.0014 18.0 1.2 0.051 13.1 0.1 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding TackOD1 PF18551.1 gi|385803000|ref|YP_005839400.1| - 0.002 17.9 0.1 0.081 12.6 0.0 2.0 2 0 0 2 2 2 1 Thaumarchaeal output domain 1 zf-ISL3 PF14690.6 gi|385803000|ref|YP_005839400.1| - 0.0087 16.7 0.1 5.1 7.8 0.0 2.2 2 0 0 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Rubredoxin PF00301.20 gi|385803000|ref|YP_005839400.1| - 0.012 15.6 0.8 4.3 7.4 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin zf-TFIIB PF13453.6 gi|385803000|ref|YP_005839400.1| - 0.015 14.6 2.6 1.3 8.4 2.8 2.3 1 1 1 2 2 2 0 Transcription factor zinc-finger DZR PF12773.7 gi|385803000|ref|YP_005839400.1| - 0.018 15.1 0.1 3.4 7.8 0.0 2.1 2 0 0 2 2 2 0 Double zinc ribbon zf-ACC PF17848.1 gi|385803000|ref|YP_005839400.1| - 0.022 14.8 0.4 7.9 6.7 0.1 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-Mss51 PF13824.6 gi|385803000|ref|YP_005839400.1| - 0.036 14.2 0.5 0.098 12.8 0.5 1.7 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf_UBZ PF18439.1 gi|385803000|ref|YP_005839400.1| - 0.039 13.5 0.9 3.1 7.5 0.0 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-C4_Topoisom PF01396.19 gi|385803000|ref|YP_005839400.1| - 0.065 13.0 1.0 8.4 6.3 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.10 gi|385803000|ref|YP_005839400.1| - 0.068 13.3 1.2 10 6.3 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain Methyltransf_13 PF08421.11 gi|385803000|ref|YP_005839400.1| - 0.074 13.3 0.1 0.57 10.5 0.0 2.0 2 0 0 2 2 2 0 Putative zinc binding domain Ogr_Delta PF04606.12 gi|385803000|ref|YP_005839400.1| - 0.14 12.1 1.0 6.1 6.9 0.2 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DUF1610 PF07754.11 gi|385803000|ref|YP_005839400.1| - 0.17 11.9 0.9 0.17 11.9 0.9 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) TP_methylase PF00590.20 gi|385803002|ref|YP_005839402.1| - 3.4e-21 76.2 2.2 3.4e-21 76.2 2.2 1.5 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Exosortase_EpsH PF09721.10 gi|385803003|ref|YP_005839403.1| - 3.8e-22 79.0 22.3 5e-22 78.7 22.3 1.2 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) PgaD PF13994.6 gi|385803003|ref|YP_005839403.1| - 3.9 7.5 6.0 1 9.4 1.8 2.2 2 1 1 3 3 3 0 PgaD-like protein Glyoxalase PF00903.25 gi|385803004|ref|YP_005839404.1| - 3.1e-17 63.0 4.0 8.8e-12 45.3 0.3 2.7 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|385803004|ref|YP_005839404.1| - 2.1e-10 40.9 2.7 0.00037 20.7 0.2 3.4 2 2 2 4 4 4 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|385803004|ref|YP_005839404.1| - 7.9e-08 33.0 2.4 0.0059 17.4 0.1 2.3 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|385803004|ref|YP_005839404.1| - 0.00017 21.8 3.3 0.21 11.7 0.1 3.8 1 1 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|385803004|ref|YP_005839404.1| - 0.1 12.5 0.1 2 8.3 0.0 2.8 2 1 0 2 2 2 0 Glyoxalase-like domain MMR_HSR1_Xtn PF16897.5 gi|385803006|ref|YP_005839406.1| - 5.9e-31 106.6 0.2 1.5e-30 105.3 0.1 1.8 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|385803006|ref|YP_005839406.1| - 7.2e-23 80.8 0.0 1.6e-22 79.8 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|385803006|ref|YP_005839406.1| - 3.4e-13 49.4 1.0 2.3e-12 46.7 0.1 2.2 2 0 0 2 2 2 1 Ferrous iron transport protein B TGS PF02824.21 gi|385803006|ref|YP_005839406.1| - 1.3e-12 47.5 0.0 2.6e-12 46.6 0.0 1.5 1 0 0 1 1 1 1 TGS domain RsgA_GTPase PF03193.16 gi|385803006|ref|YP_005839406.1| - 1e-07 32.0 0.6 0.022 14.6 0.0 3.1 3 2 0 3 3 3 2 RsgA GTPase Dynamin_N PF00350.23 gi|385803006|ref|YP_005839406.1| - 0.00052 20.1 0.0 0.79 9.8 0.1 2.5 1 1 1 2 2 2 2 Dynamin family AIG1 PF04548.16 gi|385803006|ref|YP_005839406.1| - 0.00055 19.3 0.1 0.0011 18.3 0.0 1.6 2 0 0 2 2 2 1 AIG1 family MeaB PF03308.16 gi|385803006|ref|YP_005839406.1| - 0.007 15.4 0.0 0.034 13.1 0.0 2.1 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|385803006|ref|YP_005839406.1| - 0.038 13.6 0.5 4.8 6.7 0.0 2.8 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain Arf PF00025.21 gi|385803006|ref|YP_005839406.1| - 0.057 12.9 0.1 0.26 10.7 0.0 2.1 2 1 0 2 2 2 0 ADP-ribosylation factor family ATP_bind_1 PF03029.17 gi|385803006|ref|YP_005839406.1| - 0.057 13.2 0.0 9.1 6.0 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein ABC_tran_CTD PF16326.5 gi|385803006|ref|YP_005839406.1| - 0.085 13.1 2.5 0.24 11.7 2.5 1.8 1 0 0 1 1 1 0 ABC transporter C-terminal domain POTRA PF07244.15 gi|385803006|ref|YP_005839406.1| - 0.1 13.2 0.0 0.36 11.4 0.0 2.1 1 0 0 1 1 1 0 Surface antigen variable number repeat RBD PF02196.15 gi|385803006|ref|YP_005839406.1| - 0.14 12.3 0.0 0.33 11.1 0.0 1.6 1 0 0 1 1 1 0 Raf-like Ras-binding domain DUF4345 PF14248.6 gi|385803008|ref|YP_005839408.1| - 0.042 13.7 11.2 0.062 13.2 11.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4345) DUF4173 PF13777.6 gi|385803008|ref|YP_005839408.1| - 0.28 10.6 3.0 0.47 9.8 3.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4173) Cyt_c_ox_IV PF12270.8 gi|385803008|ref|YP_005839408.1| - 1.9 8.7 8.5 0.19 11.8 0.7 2.3 1 1 1 2 2 2 0 Cytochrome c oxidase subunit IV HKR_ArcB_TM PF18415.1 gi|385803009|ref|YP_005839409.1| - 0.17 12.7 3.5 0.26 12.1 3.5 1.3 1 0 0 1 1 1 0 Histidine kinase receptor ArcB trans-membrane domain E1-E2_ATPase PF00122.20 gi|385803009|ref|YP_005839409.1| - 0.25 10.8 2.3 0.4 10.2 2.3 1.3 1 0 0 1 1 1 0 E1-E2 ATPase COX1 PF00115.20 gi|385803010|ref|YP_005839410.1| - 4.1e-147 490.5 63.0 4.1e-147 490.5 63.0 1.4 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I Pex14_N PF04695.13 gi|385803011|ref|YP_005839411.1| - 0.0015 19.2 1.5 0.002 18.8 1.5 1.1 1 0 0 1 1 1 1 Peroxisomal membrane anchor protein (Pex14p) conserved region DUF4366 PF14283.6 gi|385803011|ref|YP_005839411.1| - 0.0039 17.2 0.2 0.0054 16.8 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4366) Sporozoite_P67 PF05642.11 gi|385803011|ref|YP_005839411.1| - 0.036 12.2 0.4 0.04 12.0 0.4 1.0 1 0 0 1 1 1 0 Sporozoite P67 surface antigen PrgI PF12666.7 gi|385803011|ref|YP_005839411.1| - 0.043 14.5 5.1 0.063 14.0 4.8 1.4 1 1 0 1 1 1 0 PrgI family protein Herpes_US9 PF06072.11 gi|385803011|ref|YP_005839411.1| - 0.11 12.4 0.0 0.28 11.1 0.0 1.7 1 0 0 1 1 1 0 Alphaherpesvirus tegument protein US9 Lin-8 PF03353.15 gi|385803011|ref|YP_005839411.1| - 0.58 9.7 6.6 0.65 9.5 6.6 1.0 1 0 0 1 1 1 0 Ras-mediated vulval-induction antagonist CDC45 PF02724.14 gi|385803011|ref|YP_005839411.1| - 2.6 6.2 5.7 3 6.0 5.7 1.0 1 0 0 1 1 1 0 CDC45-like protein Usp PF00582.26 gi|385803012|ref|YP_005839412.1| - 2.1e-19 70.5 0.7 5.3e-19 69.1 0.7 1.6 1 1 0 1 1 1 1 Universal stress protein family DAGK_cat PF00781.24 gi|385803012|ref|YP_005839412.1| - 0.075 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain Thioredoxin PF00085.20 gi|385803013|ref|YP_005839413.1| - 2.4e-10 40.3 0.0 3.8e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin OST3_OST6 PF04756.13 gi|385803013|ref|YP_005839413.1| - 0.028 13.8 0.0 0.039 13.3 0.0 1.1 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family ABC_tran PF00005.27 gi|385803014|ref|YP_005839414.1| - 1.6e-29 103.2 0.0 2.6e-29 102.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385803014|ref|YP_005839414.1| - 9.7e-08 32.2 0.4 0.0072 16.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|385803014|ref|YP_005839414.1| - 0.0021 18.6 0.0 0.0035 17.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|385803014|ref|YP_005839414.1| - 0.0059 16.8 0.5 0.057 13.7 0.5 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.19 gi|385803014|ref|YP_005839414.1| - 0.019 14.4 0.4 0.76 9.2 0.4 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|385803014|ref|YP_005839414.1| - 0.038 13.7 0.0 0.087 12.6 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|385803014|ref|YP_005839414.1| - 0.049 14.0 0.9 0.2 12.0 0.9 2.1 1 1 0 1 1 1 0 AAA ATPase domain AAA_13 PF13166.6 gi|385803014|ref|YP_005839414.1| - 0.055 12.1 0.0 0.25 9.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|385803014|ref|YP_005839414.1| - 0.055 13.7 0.7 0.74 10.1 0.1 2.1 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|385803014|ref|YP_005839414.1| - 0.064 13.2 0.1 0.16 11.8 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase AAA_25 PF13481.6 gi|385803014|ref|YP_005839414.1| - 0.078 12.5 0.0 0.62 9.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|385803014|ref|YP_005839414.1| - 0.16 11.7 0.1 0.16 11.7 0.1 1.9 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|385803015|ref|YP_005839415.1| - 3.3e-30 105.4 0.0 4.5e-30 105.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|385803015|ref|YP_005839415.1| - 8.4e-12 44.7 0.7 1.7e-11 43.7 0.7 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 gi|385803015|ref|YP_005839415.1| - 2.6e-07 30.8 2.0 0.0042 16.9 0.4 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|385803015|ref|YP_005839415.1| - 6.4e-05 22.6 0.0 0.00012 21.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|385803015|ref|YP_005839415.1| - 0.00092 19.1 0.0 0.0018 18.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|385803015|ref|YP_005839415.1| - 0.0012 19.3 0.2 0.0023 18.4 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|385803015|ref|YP_005839415.1| - 0.0014 18.7 0.1 0.0053 16.8 0.0 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|385803015|ref|YP_005839415.1| - 0.0023 18.5 0.0 0.0039 17.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|385803015|ref|YP_005839415.1| - 0.039 14.2 0.0 0.068 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|385803015|ref|YP_005839415.1| - 0.045 13.3 0.0 0.084 12.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|385803015|ref|YP_005839415.1| - 0.051 12.8 0.0 0.087 12.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_30 PF13604.6 gi|385803015|ref|YP_005839415.1| - 0.054 13.2 0.0 0.11 12.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|385803015|ref|YP_005839415.1| - 0.055 13.6 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain SMC_N PF02463.19 gi|385803015|ref|YP_005839415.1| - 0.071 12.5 0.4 0.14 11.6 0.4 1.8 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain RNA_helicase PF00910.22 gi|385803015|ref|YP_005839415.1| - 0.079 13.3 0.0 0.13 12.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_15 PF13175.6 gi|385803015|ref|YP_005839415.1| - 0.099 12.3 0.0 0.18 11.5 0.0 1.4 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|385803015|ref|YP_005839415.1| - 0.12 12.8 0.0 0.29 11.6 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) BPD_transp_2 PF02653.16 gi|385803016|ref|YP_005839416.1| - 1.4e-36 126.1 38.2 1.4e-36 126.0 37.1 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|385803017|ref|YP_005839417.1| - 1.1e-32 113.2 37.2 1.5e-32 112.9 37.2 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Cytochrom_B558a PF05038.13 gi|385803017|ref|YP_005839417.1| - 6.6 6.3 11.4 1.5 8.3 0.1 3.0 2 2 0 3 3 3 0 Cytochrome Cytochrome b558 alpha-subunit Peripla_BP_6 PF13458.6 gi|385803018|ref|YP_005839418.1| - 3.7e-61 207.7 9.5 4.8e-61 207.3 9.5 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|385803018|ref|YP_005839418.1| - 4.5e-13 48.9 1.9 4.1e-12 45.8 1.9 1.9 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|385803018|ref|YP_005839418.1| - 1.1e-07 31.3 0.1 1.6e-07 30.7 0.1 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.9 gi|385803018|ref|YP_005839418.1| - 0.0005 19.8 2.9 0.0011 18.7 2.9 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SidE PF12252.8 gi|385803018|ref|YP_005839418.1| - 0.26 8.8 0.0 0.36 8.3 0.0 1.0 1 0 0 1 1 1 0 Dot/Icm substrate protein Acetyltransf_1 PF00583.25 gi|385803019|ref|YP_005839419.1| - 9e-13 48.5 0.2 2.3e-12 47.2 0.0 1.8 2 1 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|385803019|ref|YP_005839419.1| - 3.4e-11 43.2 0.0 7.9e-11 42.0 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|385803019|ref|YP_005839419.1| - 2.8e-09 37.3 0.1 6.8e-09 36.0 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|385803019|ref|YP_005839419.1| - 8.7e-05 22.7 0.0 0.00014 22.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|385803019|ref|YP_005839419.1| - 0.00026 21.7 0.0 0.00044 20.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|385803019|ref|YP_005839419.1| - 0.00028 20.8 0.0 0.00057 19.8 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein AstA PF04958.12 gi|385803019|ref|YP_005839419.1| - 0.075 11.6 0.0 5.5 5.4 0.0 2.1 1 1 1 2 2 2 0 Arginine N-succinyltransferase beta subunit ADD_ATRX PF17981.1 gi|385803019|ref|YP_005839419.1| - 0.16 11.8 0.0 0.31 10.9 0.0 1.4 1 0 0 1 1 1 0 Cysteine Rich ADD domain Polyketide_cyc2 PF10604.9 gi|385803020|ref|YP_005839420.1| - 0.058 13.7 1.3 0.1 12.9 1.0 1.7 1 1 1 2 2 2 0 Polyketide cyclase / dehydrase and lipid transport Thioredoxin_4 PF13462.6 gi|385803021|ref|YP_005839421.1| - 7.7e-17 61.9 0.0 9.9e-17 61.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 gi|385803021|ref|YP_005839421.1| - 0.0033 17.2 0.1 0.017 14.9 0.1 1.9 2 0 0 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_2 PF13098.6 gi|385803021|ref|YP_005839421.1| - 0.0046 17.4 0.3 0.02 15.3 0.3 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.20 gi|385803021|ref|YP_005839421.1| - 0.049 13.6 0.0 5.6 7.0 0.0 2.3 2 0 0 2 2 2 0 Thioredoxin TAT_signal PF10518.9 gi|385803021|ref|YP_005839421.1| - 0.14 12.1 0.1 0.39 10.6 0.1 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Met_10 PF02475.16 gi|385803023|ref|YP_005839423.1| - 2.1e-54 184.3 0.0 2.8e-54 183.9 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|385803023|ref|YP_005839423.1| - 1.1e-11 44.4 0.0 2.6e-11 43.2 0.0 1.6 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain Methyltransf_15 PF09445.10 gi|385803023|ref|YP_005839423.1| - 3.9e-06 26.5 0.0 6.2e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|385803023|ref|YP_005839423.1| - 2.9e-05 23.7 0.0 4.5e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|385803023|ref|YP_005839423.1| - 6.4e-05 23.6 0.0 0.00016 22.3 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|385803023|ref|YP_005839423.1| - 0.0002 21.1 0.0 0.00039 20.1 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 gi|385803023|ref|YP_005839423.1| - 0.00044 20.1 0.0 0.00091 19.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|385803023|ref|YP_005839423.1| - 0.0016 17.5 0.0 0.0025 16.9 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_11 PF08241.12 gi|385803023|ref|YP_005839423.1| - 0.0025 18.4 0.2 0.0075 16.9 0.0 1.9 2 0 0 2 2 1 1 Methyltransferase domain PrmA PF06325.13 gi|385803023|ref|YP_005839423.1| - 0.0048 16.3 0.1 0.0093 15.4 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) DNA_methylase PF00145.17 gi|385803023|ref|YP_005839423.1| - 0.013 14.9 0.0 0.019 14.3 0.0 1.3 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase DOPA_dioxygen PF08883.11 gi|385803023|ref|YP_005839423.1| - 0.041 14.1 0.0 0.61 10.3 0.0 2.3 1 1 0 2 2 2 0 Dopa 4,5-dioxygenase family Methyltransf_23 PF13489.6 gi|385803023|ref|YP_005839423.1| - 0.065 13.1 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.20 gi|385803023|ref|YP_005839423.1| - 0.072 12.2 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase TRM PF02005.16 gi|385803023|ref|YP_005839423.1| - 0.087 12.0 1.2 0.48 9.5 0.3 2.0 1 1 1 2 2 2 0 N2,N2-dimethylguanosine tRNA methyltransferase UPF0020 PF01170.18 gi|385803023|ref|YP_005839423.1| - 0.088 12.5 0.1 0.16 11.6 0.1 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 TFIIB PF00382.19 gi|385803024|ref|YP_005839424.1| - 1.7e-35 120.9 0.1 5.5e-17 61.6 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|385803024|ref|YP_005839424.1| - 2.8e-18 65.2 3.9 6.4e-18 64.0 3.9 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|385803024|ref|YP_005839424.1| - 0.0002 21.4 0.0 0.0059 16.7 0.0 2.2 2 0 0 2 2 2 1 Cyclin, C-terminal domain Cyclin_N PF00134.23 gi|385803024|ref|YP_005839424.1| - 0.0078 16.0 0.0 0.036 13.8 0.0 1.9 2 0 0 2 2 2 1 Cyclin, N-terminal domain Sigma70_r4 PF04545.16 gi|385803024|ref|YP_005839424.1| - 0.0079 15.7 0.1 0.12 11.9 0.0 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|385803024|ref|YP_005839424.1| - 0.012 15.2 0.0 0.043 13.5 0.0 2.0 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 gi|385803024|ref|YP_005839424.1| - 0.028 13.8 0.8 1.9 8.0 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Zn_Tnp_IS1 PF03811.13 gi|385803024|ref|YP_005839424.1| - 0.047 13.4 1.0 0.12 12.1 0.1 2.2 2 0 0 2 2 2 0 InsA N-terminal domain Auto_anti-p27 PF06677.12 gi|385803024|ref|YP_005839424.1| - 0.1 12.7 1.3 0.18 12.0 1.3 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Ribosomal_S27e PF01667.17 gi|385803024|ref|YP_005839424.1| - 0.14 11.8 0.5 0.25 11.1 0.5 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 zf-ribbon_3 PF13248.6 gi|385803024|ref|YP_005839424.1| - 0.19 11.2 3.6 1.4 8.4 3.6 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|385803024|ref|YP_005839424.1| - 1.5 9.3 3.9 0.96 9.9 0.6 2.4 2 1 1 3 3 3 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|385803024|ref|YP_005839424.1| - 5.2 7.3 5.1 7.6 6.7 0.8 2.3 1 1 1 2 2 2 0 Zinc ribbon domain Eapp_C PF10238.9 gi|385803024|ref|YP_005839424.1| - 8.1 6.5 7.7 1.3 9.1 3.7 1.8 2 0 0 2 2 2 0 E2F-associated phosphoprotein ABC_tran PF00005.27 gi|385803025|ref|YP_005839425.1| - 1.1e-29 103.7 0.2 4.2e-29 101.8 0.0 2.0 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|385803025|ref|YP_005839425.1| - 1.5e-09 38.1 2.2 3e-05 24.0 0.3 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|385803025|ref|YP_005839425.1| - 7.4e-07 29.9 0.0 1.9e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|385803025|ref|YP_005839425.1| - 5e-06 26.1 0.1 1.9e-05 24.2 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|385803025|ref|YP_005839425.1| - 0.00042 20.8 0.2 0.0011 19.4 0.2 1.7 1 0 0 1 1 1 1 AAA ATPase domain cobW PF02492.19 gi|385803025|ref|YP_005839425.1| - 0.0037 16.9 0.2 0.07 12.7 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_27 PF13514.6 gi|385803025|ref|YP_005839425.1| - 0.0043 16.7 0.0 0.013 15.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|385803025|ref|YP_005839425.1| - 0.0058 16.4 0.0 0.089 12.5 0.0 2.3 1 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|385803025|ref|YP_005839425.1| - 0.007 16.8 0.6 0.11 12.9 0.1 3.1 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|385803025|ref|YP_005839425.1| - 0.0085 15.8 0.4 0.0085 15.8 0.4 2.4 2 1 1 3 3 3 1 AAA domain RsgA_GTPase PF03193.16 gi|385803025|ref|YP_005839425.1| - 0.023 14.6 1.5 0.04 13.8 0.2 2.0 2 0 0 2 2 2 0 RsgA GTPase NACHT PF05729.12 gi|385803025|ref|YP_005839425.1| - 0.044 13.7 0.6 1.4 8.9 0.1 2.3 2 0 0 2 2 2 0 NACHT domain AAA_22 PF13401.6 gi|385803025|ref|YP_005839425.1| - 0.059 13.7 0.8 0.36 11.1 0.6 2.4 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|385803025|ref|YP_005839425.1| - 0.065 13.8 0.0 0.2 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|385803025|ref|YP_005839425.1| - 0.087 12.6 0.2 0.087 12.6 0.2 2.1 2 0 0 2 2 2 0 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|385803025|ref|YP_005839425.1| - 0.11 11.7 0.1 0.19 10.9 0.1 1.6 1 1 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.6 gi|385803025|ref|YP_005839425.1| - 0.3 11.2 1.7 1.9 8.7 0.2 2.6 3 0 0 3 3 3 0 AAA domain MMR_HSR1 PF01926.23 gi|385803025|ref|YP_005839425.1| - 0.93 9.6 3.8 0.69 10.0 0.3 2.5 2 2 0 2 2 2 0 50S ribosome-binding GTPase FecCD PF01032.18 gi|385803026|ref|YP_005839426.1| - 1.3e-87 293.7 39.7 1.6e-87 293.5 39.7 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|385803026|ref|YP_005839426.1| - 1.4e-05 24.8 18.6 1.4e-05 24.8 18.6 2.2 1 1 1 2 2 2 1 ABC 3 transport family Nepo_coat_N PF03689.15 gi|385803026|ref|YP_005839426.1| - 0.14 12.1 0.0 0.32 11.0 0.0 1.5 1 0 0 1 1 1 0 Nepovirus coat protein, N-terminal domain Peripla_BP_2 PF01497.18 gi|385803027|ref|YP_005839427.1| - 4.5e-25 88.6 0.1 6.4e-25 88.1 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein EBP50_C PF09007.11 gi|385803027|ref|YP_005839427.1| - 4 8.5 9.7 1.6 9.7 3.3 2.3 2 0 0 2 2 2 0 EBP50, C-terminal Thioredoxin PF00085.20 gi|385803028|ref|YP_005839428.1| - 1.4e-29 102.1 0.0 2.2e-29 101.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|385803028|ref|YP_005839428.1| - 3.5e-10 40.3 0.1 9.5e-09 35.7 0.1 2.3 1 1 0 1 1 1 1 Thioredoxin-like domain TraF PF13728.6 gi|385803028|ref|YP_005839428.1| - 7.4e-07 29.2 0.3 1.7e-06 28.1 0.0 1.6 1 1 1 2 2 2 1 F plasmid transfer operon protein Thioredoxin_7 PF13899.6 gi|385803028|ref|YP_005839428.1| - 2e-06 27.9 0.1 4.6e-06 26.7 0.1 1.6 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_8 PF13905.6 gi|385803028|ref|YP_005839428.1| - 2.4e-06 27.7 0.1 0.014 15.7 0.0 2.8 1 1 2 3 3 3 2 Thioredoxin-like Thioredoxin_9 PF14595.6 gi|385803028|ref|YP_005839428.1| - 9.7e-06 25.4 0.1 1.3e-05 25.0 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 gi|385803028|ref|YP_005839428.1| - 0.00013 21.8 0.2 0.00036 20.3 0.0 1.7 1 1 1 2 2 2 1 DSBA-like thioredoxin domain HyaE PF07449.11 gi|385803028|ref|YP_005839428.1| - 0.00023 21.1 0.0 0.00048 20.1 0.0 1.5 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE AhpC-TSA PF00578.21 gi|385803028|ref|YP_005839428.1| - 0.00031 20.6 0.0 0.00042 20.2 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family DUF836 PF05768.14 gi|385803028|ref|YP_005839428.1| - 0.00062 20.1 0.0 0.0012 19.2 0.0 1.5 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_3 PF13192.6 gi|385803028|ref|YP_005839428.1| - 0.0027 17.7 0.0 0.0043 17.1 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_5 PF13743.6 gi|385803028|ref|YP_005839428.1| - 0.0051 16.5 0.5 0.018 14.7 0.0 2.0 2 1 1 3 3 3 1 Thioredoxin OST3_OST6 PF04756.13 gi|385803028|ref|YP_005839428.1| - 0.018 14.4 0.0 0.022 14.1 0.0 1.2 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family TPX2 PF06886.11 gi|385803028|ref|YP_005839428.1| - 0.075 13.3 0.8 0.15 12.3 0.8 1.4 1 0 0 1 1 1 0 Targeting protein for Xklp2 (TPX2) Glutaredoxin PF00462.24 gi|385803028|ref|YP_005839428.1| - 0.097 12.9 0.5 0.27 11.5 0.1 2.0 2 1 0 2 2 2 0 Glutaredoxin DEAD PF00270.29 gi|385803030|ref|YP_005839430.1| - 1.9e-22 79.9 0.4 6.7e-21 74.8 0.0 2.5 2 1 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|385803030|ref|YP_005839430.1| - 5.1e-07 30.0 0.0 1.9e-06 28.2 0.0 2.0 1 1 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|385803030|ref|YP_005839430.1| - 9.7e-07 28.9 0.0 1.7e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DCB PF16213.5 gi|385803030|ref|YP_005839430.1| - 0.085 12.5 0.1 0.15 11.7 0.1 1.3 1 0 0 1 1 1 0 Dimerisation and cyclophilin-binding domain of Mon2 Aminotran_1_2 PF00155.21 gi|385803031|ref|YP_005839431.1| - 3.4e-64 217.3 0.0 3.8e-64 217.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|385803031|ref|YP_005839431.1| - 2.7e-05 22.9 0.0 5.4e-05 21.9 0.0 1.4 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|385803031|ref|YP_005839431.1| - 0.0044 16.0 0.0 0.0076 15.2 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|385803031|ref|YP_005839431.1| - 0.018 14.3 0.0 0.04 13.2 0.0 1.5 2 0 0 2 2 2 0 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|385803031|ref|YP_005839431.1| - 0.023 14.0 0.0 0.036 13.4 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family DMRL_synthase PF00885.19 gi|385803032|ref|YP_005839432.1| - 8.6e-32 109.9 1.0 1e-31 109.7 1.0 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase FHA_2 PF17913.1 gi|385803032|ref|YP_005839432.1| - 0.053 13.8 0.0 0.092 13.0 0.0 1.4 1 0 0 1 1 1 0 FHA domain Cadherin_4 PF17803.1 gi|385803032|ref|YP_005839432.1| - 2.9 8.6 6.9 0.24 12.0 2.0 1.8 2 1 0 2 2 2 0 Bacterial cadherin-like domain PMT_2 PF13231.6 gi|385803033|ref|YP_005839433.1| - 4.2e-11 43.3 7.8 4.2e-11 43.3 7.8 3.4 4 1 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase TMEM190 PF15431.6 gi|385803033|ref|YP_005839433.1| - 0.09 12.9 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Transmembrane protein 190 Mntp PF02659.15 gi|385803033|ref|YP_005839433.1| - 2.1 8.1 6.2 1.3 8.7 0.1 3.1 3 0 0 3 3 3 0 Putative manganese efflux pump ATP-grasp PF02222.22 gi|385803034|ref|YP_005839434.1| - 1.2e-47 161.7 0.0 1.7e-47 161.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 gi|385803034|ref|YP_005839434.1| - 7.6e-16 57.5 0.0 1.7e-15 56.4 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain ATP-grasp_3 PF02655.14 gi|385803034|ref|YP_005839434.1| - 1.6e-06 28.2 0.0 2.4e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain 2-Hacid_dh_C PF02826.19 gi|385803034|ref|YP_005839434.1| - 5.5e-05 22.6 0.0 9.8e-05 21.8 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Dala_Dala_lig_C PF07478.13 gi|385803034|ref|YP_005839434.1| - 0.0001 21.9 0.0 0.00036 20.1 0.0 1.9 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus XdhC_C PF13478.6 gi|385803034|ref|YP_005839434.1| - 0.0039 17.7 0.0 0.0075 16.8 0.0 1.5 1 0 0 1 1 1 1 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|385803034|ref|YP_005839434.1| - 0.0048 16.8 0.0 0.011 15.6 0.0 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|385803034|ref|YP_005839434.1| - 0.056 14.0 0.1 0.15 12.6 0.1 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AIRC PF00731.20 gi|385803035|ref|YP_005839435.1| - 1.4e-50 170.7 0.2 1.8e-50 170.4 0.2 1.1 1 0 0 1 1 1 1 AIR carboxylase Peripla_BP_1 PF00532.21 gi|385803035|ref|YP_005839435.1| - 0.053 12.9 0.0 0.068 12.6 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family Oxidored_q4 PF00507.19 gi|385803036|ref|YP_005839436.1| - 4.2e-31 107.0 0.2 5.1e-31 106.8 0.2 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF4519 PF15012.6 gi|385803036|ref|YP_005839436.1| - 0.08 13.1 0.5 0.24 11.6 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4519) Oxidored_q6 PF01058.22 gi|385803037|ref|YP_005839437.1| - 5.7e-22 77.9 0.2 8.6e-22 77.4 0.2 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 gi|385803038|ref|YP_005839438.1| - 4.1e-82 275.3 0.0 1.9e-80 269.9 0.0 2.3 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|385803038|ref|YP_005839438.1| - 4.6e-34 117.7 0.2 8.6e-34 116.8 0.2 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Autoind_bind PF03472.15 gi|385803038|ref|YP_005839438.1| - 0.019 14.5 0.7 0.052 13.0 0.2 2.0 1 1 1 2 2 2 0 Autoinducer binding domain NADHdh PF00146.21 gi|385803039|ref|YP_005839439.1| - 5.8e-93 311.5 15.1 6.8e-93 311.3 15.1 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.27 gi|385803040|ref|YP_005839440.1| - 1.6e-12 46.7 9.5 1.4e-06 27.9 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|385803040|ref|YP_005839440.1| - 3.1e-12 46.9 10.0 4.9e-12 46.2 10.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|385803040|ref|YP_005839440.1| - 8.1e-11 42.7 4.0 9.3e-06 26.5 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|385803040|ref|YP_005839440.1| - 7.5e-10 38.8 8.6 1e-09 38.3 8.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|385803040|ref|YP_005839440.1| - 3.1e-09 36.8 22.6 2.3e-07 30.9 11.6 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|385803040|ref|YP_005839440.1| - 1.6e-07 31.3 20.3 2.2e-06 27.7 11.8 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|385803040|ref|YP_005839440.1| - 9e-06 25.6 13.5 0.0032 17.5 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|385803040|ref|YP_005839440.1| - 1.1e-05 25.8 12.3 0.0061 17.1 1.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|385803040|ref|YP_005839440.1| - 2.3e-05 24.8 10.0 0.00092 19.6 11.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|385803040|ref|YP_005839440.1| - 3.8e-05 23.5 11.6 0.0021 18.1 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|385803040|ref|YP_005839440.1| - 0.00012 22.8 14.4 0.0038 18.0 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|385803040|ref|YP_005839440.1| - 0.00077 19.8 14.3 0.015 15.7 4.6 2.2 1 1 1 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|385803040|ref|YP_005839440.1| - 0.0025 18.0 9.9 0.095 12.9 1.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|385803040|ref|YP_005839440.1| - 0.024 14.7 7.7 0.068 13.3 7.8 1.7 1 1 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S TNFR_c6 PF00020.18 gi|385803040|ref|YP_005839440.1| - 0.29 11.6 7.3 4.1 7.9 1.3 2.5 2 0 0 2 2 2 0 TNFR/NGFR cysteine-rich region Fer4_22 PF17179.4 gi|385803040|ref|YP_005839440.1| - 0.47 11.3 10.3 1.4 9.8 1.7 2.3 1 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|385803040|ref|YP_005839440.1| - 0.49 11.0 13.3 1.1 9.9 1.7 2.6 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I zf_PR_Knuckle PF18445.1 gi|385803040|ref|YP_005839440.1| - 1.5 8.7 6.6 7.4 6.5 1.2 2.5 2 0 0 2 2 2 0 PR zinc knuckle motif Oxidored_q3 PF00499.20 gi|385803041|ref|YP_005839441.1| - 7.7e-19 67.8 6.2 7.7e-19 67.8 6.2 1.4 2 0 0 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 PetM PF08041.11 gi|385803041|ref|YP_005839441.1| - 0.04 13.5 3.1 0.04 13.5 3.1 2.3 2 1 0 2 2 2 0 PetM family of cytochrome b6f complex subunit 7 DUF4040 PF13244.6 gi|385803041|ref|YP_005839441.1| - 1.4 9.1 15.2 0.47 10.6 11.9 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4040) Oxidored_q3 PF00499.20 gi|385803042|ref|YP_005839442.1| - 0.0088 15.8 0.7 0.0098 15.6 0.7 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Oxidored_q2 PF00420.24 gi|385803043|ref|YP_005839443.1| - 8.5e-22 76.8 7.2 9.1e-22 76.7 7.2 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Proton_antipo_M PF00361.20 gi|385803044|ref|YP_005839444.1| - 8.2e-76 255.0 20.4 1.7e-75 253.9 20.4 1.6 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|385803044|ref|YP_005839444.1| - 2.4e-18 66.0 0.5 8.3e-18 64.2 0.5 2.0 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|385803045|ref|YP_005839445.1| - 9.7e-74 248.2 28.2 2.6e-73 246.8 28.2 1.7 1 0 0 1 1 1 1 Proton-conducting membrane transporter Oxidored_q5_N PF01059.17 gi|385803045|ref|YP_005839445.1| - 0.0011 19.0 0.5 0.0011 19.0 0.5 3.4 2 1 1 3 3 3 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Tachykinin PF02202.16 gi|385803045|ref|YP_005839445.1| - 0.37 10.8 2.3 6.6 6.9 0.3 3.1 2 0 0 2 2 2 0 Tachykinin family Proton_antipo_M PF00361.20 gi|385803046|ref|YP_005839446.1| - 1.8e-66 224.3 20.2 1.8e-66 224.3 20.2 1.9 2 1 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|385803046|ref|YP_005839446.1| - 0.00076 19.5 3.7 0.00076 19.5 3.7 3.1 4 0 0 4 4 4 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Tudor_4 PF18358.1 gi|385803046|ref|YP_005839446.1| - 0.21 11.2 0.4 0.43 10.2 0.4 1.4 1 0 0 1 1 1 0 Histone methyltransferase Tudor domain DUF624 PF04854.14 gi|385803046|ref|YP_005839446.1| - 1 9.5 8.3 0.12 12.5 0.6 3.4 2 1 1 3 3 3 0 Protein of unknown function, DUF624 DHH PF01368.20 gi|385803047|ref|YP_005839447.1| - 3.1e-12 46.6 1.8 3.9e-12 46.3 0.4 1.9 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.19 gi|385803047|ref|YP_005839447.1| - 3.3e-11 43.8 0.2 7.5e-11 42.6 0.2 1.6 1 0 0 1 1 1 1 DHHA1 domain TrkA_N PF02254.18 gi|385803047|ref|YP_005839447.1| - 0.0033 17.7 0.1 0.016 15.5 0.0 2.2 2 1 0 2 2 2 1 TrkA-N domain CBS PF00571.28 gi|385803048|ref|YP_005839448.1| - 3.4e-21 75.4 3.4 8.3e-11 42.2 0.7 2.9 3 0 0 3 3 3 2 CBS domain ParBc PF02195.18 gi|385803048|ref|YP_005839448.1| - 4.2e-07 30.2 0.0 2.2e-06 27.8 0.1 2.2 2 1 0 2 2 2 1 ParB-like nuclease domain ParBc_2 PF08857.11 gi|385803048|ref|YP_005839448.1| - 0.044 13.9 0.0 0.34 11.0 0.0 2.1 1 1 0 1 1 1 0 Putative ParB-like nuclease Pyr_redox_2 PF07992.14 gi|385803050|ref|YP_005839450.1| - 6.7e-45 153.6 0.3 8.1e-45 153.3 0.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|385803050|ref|YP_005839450.1| - 1.7e-15 57.0 0.2 2.5e-12 46.7 0.0 2.6 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|385803050|ref|YP_005839450.1| - 3.9e-14 53.0 1.6 9.7e-13 48.5 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|385803050|ref|YP_005839450.1| - 1.8e-06 27.8 1.1 0.053 13.1 0.0 2.6 2 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|385803050|ref|YP_005839450.1| - 0.00027 20.2 5.8 0.0038 16.4 0.2 3.0 2 1 0 3 3 3 1 FAD binding domain HI0933_like PF03486.14 gi|385803050|ref|YP_005839450.1| - 0.00029 19.7 1.0 0.87 8.2 0.0 3.4 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.6 gi|385803050|ref|YP_005839450.1| - 0.00038 20.6 0.1 0.0028 17.9 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|385803050|ref|YP_005839450.1| - 0.0056 17.1 0.0 0.029 14.8 0.0 2.0 2 0 0 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|385803050|ref|YP_005839450.1| - 0.0086 15.4 0.0 0.74 9.1 0.0 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.7 gi|385803050|ref|YP_005839450.1| - 0.017 14.5 0.0 0.033 13.5 0.0 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|385803050|ref|YP_005839450.1| - 0.041 12.7 0.4 15 4.3 0.0 3.0 3 0 0 3 3 3 0 Tryptophan halogenase Amino_oxidase PF01593.24 gi|385803050|ref|YP_005839450.1| - 0.075 12.3 0.4 0.94 8.7 0.1 2.1 1 1 1 2 2 2 0 Flavin containing amine oxidoreductase GIDA PF01134.22 gi|385803050|ref|YP_005839450.1| - 0.13 11.3 1.0 11 5.0 0.1 3.4 4 0 0 4 4 4 0 Glucose inhibited division protein A DUF357 PF04010.13 gi|385803051|ref|YP_005839451.1| - 1.6e-31 108.2 0.1 1.9e-31 108.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) tRNA-synt_1e PF01406.19 gi|385803052|ref|YP_005839452.1| - 2.8e-101 338.8 0.6 1.4e-100 336.6 0.6 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|385803052|ref|YP_005839452.1| - 7.6e-10 38.2 0.3 1.5e-05 24.1 0.0 3.0 3 0 0 3 3 3 2 tRNA synthetases class I (K) DALR_2 PF09190.11 gi|385803052|ref|YP_005839452.1| - 4.3e-09 36.7 0.0 1.6e-08 34.9 0.0 2.0 1 0 0 1 1 1 1 DALR domain tRNA-synt_1g PF09334.11 gi|385803052|ref|YP_005839452.1| - 1.4e-08 33.9 0.1 0.001 17.9 0.1 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|385803052|ref|YP_005839452.1| - 0.00012 20.6 0.2 0.003 15.9 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) DUF2608 PF11019.8 gi|385803052|ref|YP_005839452.1| - 0.066 12.7 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2608) tRNA-synt_1c PF00749.21 gi|385803052|ref|YP_005839452.1| - 0.079 11.8 0.0 0.17 10.8 0.0 1.5 1 0 0 1 1 1 0 tRNA synthetases class I (E and Q), catalytic domain CbiX PF01903.17 gi|385803054|ref|YP_005839454.1| - 2.7e-41 140.2 0.2 2.3e-21 76.1 0.0 2.5 3 0 0 3 3 3 2 CbiX CbiK PF06180.11 gi|385803054|ref|YP_005839454.1| - 3.5e-07 29.8 0.1 0.0086 15.4 0.1 2.1 1 1 0 2 2 2 2 Cobalt chelatase (CbiK) Fumerase_C PF05683.12 gi|385803054|ref|YP_005839454.1| - 0.12 11.7 0.0 13 5.0 0.0 2.2 2 0 0 2 2 2 0 Fumarase C-terminus DR2241 PF18069.1 gi|385803055|ref|YP_005839455.1| - 4.6e-41 139.2 0.6 4.6e-41 139.2 0.6 2.2 2 0 0 2 2 2 1 DR2241 stabilising domain Fer4_23 PF18009.1 gi|385803055|ref|YP_005839455.1| - 2.2e-31 108.1 1.2 4.2e-31 107.2 1.2 1.5 1 0 0 1 1 1 1 4Fe-4S iron-sulfur cluster binding domain Trm112p PF03966.16 gi|385803057|ref|YP_005839457.1| - 2.4e-05 24.8 0.2 5.7e-05 23.6 0.2 1.6 1 1 0 1 1 1 1 Trm112p-like protein Adenylsucc_synt PF00709.21 gi|385803058|ref|YP_005839458.1| - 1.3e-149 498.7 0.0 1.5e-149 498.5 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase AICARFT_IMPCHas PF01808.18 gi|385803059|ref|YP_005839459.1| - 4.4e-84 282.4 0.0 6.2e-84 281.9 0.0 1.2 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme Formyl_trans_N PF00551.19 gi|385803059|ref|YP_005839459.1| - 6.2e-38 130.3 0.0 1.2e-37 129.4 0.0 1.4 1 0 0 1 1 1 1 Formyl transferase Lyase_1 PF00206.20 gi|385803060|ref|YP_005839460.1| - 1.5e-47 162.6 0.0 2.5e-47 161.8 0.0 1.4 1 0 0 1 1 1 1 Lyase ASL_C PF08328.11 gi|385803060|ref|YP_005839460.1| - 1.2e-39 134.9 0.0 2e-39 134.2 0.0 1.3 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal DUF3029 PF11230.8 gi|385803060|ref|YP_005839460.1| - 0.16 10.3 0.0 0.23 9.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3029) Glu_dehyd_C PF16912.5 gi|385803061|ref|YP_005839461.1| - 9.4e-99 329.1 0.0 1.3e-98 328.7 0.0 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|385803061|ref|YP_005839461.1| - 1.3e-10 41.1 0.0 1.9e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|385803061|ref|YP_005839461.1| - 0.008 16.2 0.0 0.017 15.1 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|385803061|ref|YP_005839461.1| - 0.19 11.6 0.0 2 8.4 0.0 2.1 2 0 0 2 2 2 0 N-terminal domain of oxidoreductase Pribosyltran PF00156.27 gi|385803062|ref|YP_005839462.1| - 9.6e-14 51.2 0.4 3.2e-13 49.5 0.2 1.9 2 0 0 2 2 2 1 Phosphoribosyl transferase domain HTH_23 PF13384.6 gi|385803062|ref|YP_005839462.1| - 0.0014 18.4 0.0 0.0028 17.4 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain UPRTase PF14681.6 gi|385803062|ref|YP_005839462.1| - 0.0024 17.4 0.1 0.0037 16.7 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase HTH_7 PF02796.15 gi|385803062|ref|YP_005839462.1| - 0.0047 17.0 0.0 0.009 16.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_11 PF08279.12 gi|385803062|ref|YP_005839462.1| - 0.025 14.5 0.1 0.095 12.7 0.1 2.0 2 0 0 2 2 2 0 HTH domain HTH_24 PF13412.6 gi|385803062|ref|YP_005839462.1| - 0.026 14.1 0.1 0.12 12.0 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|385803062|ref|YP_005839462.1| - 0.03 13.8 0.0 0.055 13.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 PRTase_2 PF15609.6 gi|385803062|ref|YP_005839462.1| - 0.034 13.6 0.3 0.1 12.1 0.1 1.9 2 0 0 2 2 2 0 Phosphoribosyl transferase MarR_2 PF12802.7 gi|385803062|ref|YP_005839462.1| - 0.13 12.2 0.0 0.28 11.1 0.0 1.6 1 0 0 1 1 1 0 MarR family Sigma70_r3 PF04539.16 gi|385803062|ref|YP_005839462.1| - 0.13 12.4 0.3 6.6 6.9 0.0 2.5 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_38 PF13936.6 gi|385803062|ref|YP_005839462.1| - 0.14 11.9 0.0 0.32 10.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|385803062|ref|YP_005839462.1| - 0.15 11.7 0.0 0.29 10.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_Crp_2 PF13545.6 gi|385803062|ref|YP_005839462.1| - 0.18 11.8 0.0 0.41 10.7 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain CENP-B_N PF04218.13 gi|385803062|ref|YP_005839462.1| - 0.22 11.2 0.0 0.47 10.1 0.0 1.5 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain Glutaredoxin PF00462.24 gi|385803063|ref|YP_005839463.1| - 1.9e-13 50.4 0.0 3.4e-13 49.6 0.0 1.4 2 0 0 2 2 2 1 Glutaredoxin DUF4147 PF13660.6 gi|385803066|ref|YP_005839466.1| - 1.7e-64 217.5 0.7 3.3e-64 216.6 0.7 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|385803066|ref|YP_005839466.1| - 3.9e-30 104.3 6.6 7.3e-30 103.4 6.6 1.5 1 0 0 1 1 1 1 MOFRL family PAPS_reduct PF01507.19 gi|385803067|ref|YP_005839467.1| - 2.2e-18 66.9 0.0 1.3e-14 54.6 0.0 3.1 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family Diphthami_syn_2 PF01902.17 gi|385803067|ref|YP_005839467.1| - 0.1 12.1 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Diphthamide synthase Diphthami_syn_2 PF01902.17 gi|385803068|ref|YP_005839468.1| - 6.6e-51 172.9 0.0 1.9e-50 171.4 0.0 1.6 1 1 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|385803068|ref|YP_005839468.1| - 0.022 14.2 0.0 0.03 13.8 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|385803068|ref|YP_005839468.1| - 0.23 11.0 0.0 0.36 10.4 0.0 1.3 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) NTP_transferase PF00483.23 gi|385803069|ref|YP_005839469.1| - 4.6e-37 127.9 0.0 5.6e-37 127.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|385803069|ref|YP_005839469.1| - 1.1e-09 38.9 0.0 1.4e-09 38.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|385803069|ref|YP_005839469.1| - 0.013 15.3 0.0 0.042 13.6 0.0 1.8 2 0 0 2 2 2 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase zf-trcl PF13451.6 gi|385803070|ref|YP_005839470.1| - 0.11 12.3 2.5 0.3 11.0 0.3 2.2 2 0 0 2 2 2 0 Probable zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|385803070|ref|YP_005839470.1| - 0.21 11.8 2.8 0.43 10.7 2.8 1.6 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|385803070|ref|YP_005839470.1| - 0.4 11.0 2.8 18 5.7 0.3 2.5 2 0 0 2 2 2 0 zinc-ribbon Pribosyltran PF00156.27 gi|385803071|ref|YP_005839471.1| - 3.6e-17 62.3 2.7 5.6e-17 61.7 2.7 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|385803071|ref|YP_005839471.1| - 0.0031 17.0 0.0 0.0047 16.4 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|385803071|ref|YP_005839471.1| - 0.13 11.8 0.2 0.17 11.3 0.2 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase Pilin_N PF07790.11 gi|385803072|ref|YP_005839472.1| - 1.8e-21 76.8 0.5 2.9e-21 76.2 0.5 1.3 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal DUF4307 PF14155.6 gi|385803072|ref|YP_005839472.1| - 0.098 12.5 0.2 0.18 11.6 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) MNHE PF01899.16 gi|385803073|ref|YP_005839473.1| - 1.6e-34 118.8 0.8 2.3e-34 118.3 0.8 1.2 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit MrpF_PhaF PF04066.13 gi|385803074|ref|YP_005839474.1| - 6.7e-18 64.8 5.6 6.7e-18 64.8 5.6 2.2 2 1 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) SPT_ssu-like PF11779.8 gi|385803074|ref|YP_005839474.1| - 0.05 13.2 0.1 0.05 13.2 0.1 2.1 3 0 0 3 3 3 0 Small subunit of serine palmitoyltransferase-like PhaG_MnhG_YufB PF03334.14 gi|385803075|ref|YP_005839475.1| - 6e-27 93.7 10.5 7.1e-27 93.5 10.5 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit PRA1 PF03208.19 gi|385803075|ref|YP_005839475.1| - 0.0057 16.3 3.2 0.0068 16.0 3.2 1.0 1 0 0 1 1 1 1 PRA1 family protein DUF4040 PF13244.6 gi|385803076|ref|YP_005839476.1| - 5.7e-17 61.6 17.0 5.7e-17 61.6 17.0 2.7 3 0 0 3 3 3 1 Domain of unknown function (DUF4040) EI24 PF07264.11 gi|385803076|ref|YP_005839476.1| - 0.2 11.9 7.2 0.24 11.6 6.9 1.3 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) MnhB PF04039.13 gi|385803077|ref|YP_005839477.1| - 8.1e-22 77.8 17.6 1.1e-21 77.4 17.6 1.2 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Oxidored_q2 PF00420.24 gi|385803078|ref|YP_005839478.1| - 2e-27 94.9 3.1 2.3e-27 94.6 3.1 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.9 gi|385803078|ref|YP_005839478.1| - 0.00027 20.8 3.0 0.00027 20.8 3.0 1.9 2 0 0 2 2 2 1 Predicted membrane protein (DUF2108) Proton_antipo_M PF00361.20 gi|385803079|ref|YP_005839479.1| - 8.1e-63 212.3 26.8 8.1e-63 212.3 26.8 2.1 1 1 1 2 2 2 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|385803079|ref|YP_005839479.1| - 6.2e-06 25.7 9.4 6.2e-06 25.7 9.4 2.8 1 1 1 2 2 2 1 NADH dehydrogenase I, subunit N related protein Proton_antipo_N PF00662.20 gi|385803079|ref|YP_005839479.1| - 0.072 13.2 2.1 0.23 11.6 0.4 2.9 2 0 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|385803080|ref|YP_005839480.1| - 2.8e-62 210.6 15.4 2.8e-62 210.6 15.4 1.7 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|385803080|ref|YP_005839480.1| - 5.1e-05 23.3 0.3 5.1e-05 23.3 0.3 2.2 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|385803081|ref|YP_005839481.1| - 5.2e-40 137.5 17.5 5.2e-40 137.5 17.5 2.4 2 0 0 2 2 2 1 Proton-conducting membrane transporter DFP PF04127.15 gi|385803082|ref|YP_005839482.1| - 3.5e-42 144.3 2.0 1.3e-41 142.5 0.3 2.3 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|385803082|ref|YP_005839482.1| - 6.7e-33 113.7 1.2 1.5e-32 112.6 1.2 1.5 1 0 0 1 1 1 1 Flavoprotein DUF3222 PF11519.8 gi|385803082|ref|YP_005839482.1| - 0.087 13.1 0.1 2.9 8.2 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3222) Polyketide_cyc2 PF10604.9 gi|385803083|ref|YP_005839483.1| - 9.6e-09 35.6 1.2 1.3e-08 35.2 1.2 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|385803083|ref|YP_005839483.1| - 9.3e-06 25.9 0.3 1.9e-05 24.9 0.1 1.6 2 1 0 2 2 2 1 Polyketide cyclase / dehydrase and lipid transport TrkA_N PF02254.18 gi|385803084|ref|YP_005839484.1| - 1e-48 164.4 10.9 4.6e-26 91.4 1.0 3.2 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 gi|385803084|ref|YP_005839484.1| - 3.2e-27 94.2 10.3 5.7e-13 48.5 0.0 3.3 3 1 1 4 4 4 2 TrkA-C domain NAD_binding_7 PF13241.6 gi|385803084|ref|YP_005839484.1| - 1.9e-09 37.9 2.8 3.2e-05 24.3 0.4 2.9 3 0 0 3 3 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|385803084|ref|YP_005839484.1| - 6.4e-09 36.0 0.3 0.0012 18.9 0.1 2.6 2 1 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|385803084|ref|YP_005839484.1| - 1.2e-06 28.8 6.4 0.0069 16.6 0.3 3.6 3 1 1 4 4 4 2 Saccharopine dehydrogenase NADP binding domain FAD_binding_3 PF01494.19 gi|385803084|ref|YP_005839484.1| - 2.6e-06 26.9 0.4 0.012 14.9 0.0 2.5 3 0 0 3 3 3 2 FAD binding domain F420_oxidored PF03807.17 gi|385803084|ref|YP_005839484.1| - 3.4e-06 27.5 0.3 0.064 13.8 0.1 3.6 3 0 0 3 3 3 2 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.14 gi|385803084|ref|YP_005839484.1| - 4.6e-05 22.8 1.3 0.0095 15.2 0.2 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|385803084|ref|YP_005839484.1| - 0.00011 21.8 0.7 0.00039 20.0 0.1 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XdhC_C PF13478.6 gi|385803084|ref|YP_005839484.1| - 0.00029 21.3 0.8 0.12 12.9 0.0 3.1 2 1 0 3 3 3 1 XdhC Rossmann domain DAO PF01266.24 gi|385803084|ref|YP_005839484.1| - 0.00085 19.0 2.8 0.016 14.8 0.5 2.9 3 0 0 3 3 3 1 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|385803084|ref|YP_005839484.1| - 0.0011 18.9 0.5 0.14 12.0 0.2 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|385803084|ref|YP_005839484.1| - 0.0013 18.1 0.0 1.5 8.2 0.0 2.5 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Castor_Poll_mid PF06241.12 gi|385803084|ref|YP_005839484.1| - 0.0015 18.5 0.0 0.7 9.9 0.0 2.6 2 0 0 2 2 2 1 Castor and Pollux, part of voltage-gated ion channel ApbA PF02558.16 gi|385803084|ref|YP_005839484.1| - 0.0015 18.2 0.1 0.0061 16.2 0.0 2.0 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 gi|385803084|ref|YP_005839484.1| - 0.0021 18.6 0.3 1.2 9.8 0.0 3.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|385803084|ref|YP_005839484.1| - 0.003 16.9 2.8 1.5 8.1 0.0 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain adh_short PF00106.25 gi|385803084|ref|YP_005839484.1| - 0.014 14.9 0.1 0.26 10.7 0.0 2.2 2 0 0 2 2 2 0 short chain dehydrogenase HEM4 PF02602.15 gi|385803084|ref|YP_005839484.1| - 0.023 14.1 0.2 0.061 12.7 0.0 1.8 2 0 0 2 2 2 0 Uroporphyrinogen-III synthase HemD YflT PF11181.8 gi|385803084|ref|YP_005839484.1| - 0.029 14.9 0.5 0.4 11.2 0.1 2.7 2 0 0 2 2 2 0 Heat induced stress protein YflT PRODH PF18327.1 gi|385803084|ref|YP_005839484.1| - 0.053 13.7 0.3 0.15 12.3 0.3 1.8 1 0 0 1 1 1 0 Proline utilization A proline dehydrogenase N-terminal domain NAD_binding_8 PF13450.6 gi|385803084|ref|YP_005839484.1| - 0.24 11.7 0.5 7.6 6.8 0.1 2.6 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain ThiF PF00899.21 gi|385803084|ref|YP_005839484.1| - 0.8 9.0 5.6 1.1 8.5 0.4 3.1 2 2 1 3 3 3 0 ThiF family Rossmann-like PF10727.9 gi|385803084|ref|YP_005839484.1| - 0.84 9.5 3.4 2.4 8.0 1.2 2.4 2 1 0 2 2 2 0 Rossmann-like domain TrkH PF02386.16 gi|385803085|ref|YP_005839485.1| - 1.9e-67 227.8 6.4 4.7e-67 226.6 6.4 1.5 1 1 0 1 1 1 1 Cation transport protein Amidase PF01425.21 gi|385803086|ref|YP_005839486.1| - 5.1e-135 450.9 9.2 3.6e-133 444.8 9.2 2.6 1 1 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.15 gi|385803087|ref|YP_005839487.1| - 3.8e-16 59.1 1.1 3.8e-16 59.1 1.1 1.9 2 0 0 2 2 2 1 Glu-tRNAGln amidotransferase C subunit DUF2420 PF10336.9 gi|385803087|ref|YP_005839487.1| - 0.08 13.0 0.1 0.099 12.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2420) TFIIB PF00382.19 gi|385803088|ref|YP_005839488.1| - 3.2e-41 139.2 0.2 1.1e-19 70.2 0.1 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|385803088|ref|YP_005839488.1| - 1.3e-18 66.2 3.1 2.3e-18 65.4 3.1 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|385803088|ref|YP_005839488.1| - 0.012 15.0 2.0 0.049 13.0 2.0 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_S27e PF01667.17 gi|385803088|ref|YP_005839488.1| - 0.012 15.3 0.6 0.021 14.5 0.6 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 Cyclin_C PF02984.19 gi|385803088|ref|YP_005839488.1| - 0.014 15.5 0.0 0.17 12.0 0.0 2.2 2 0 0 2 2 2 0 Cyclin, C-terminal domain Sigma70_r4 PF04545.16 gi|385803088|ref|YP_005839488.1| - 0.027 14.0 0.1 0.027 14.0 0.1 3.6 4 0 0 4 4 4 0 Sigma-70, region 4 Cyclin_N PF00134.23 gi|385803088|ref|YP_005839488.1| - 0.11 12.3 0.1 0.59 9.9 0.0 2.1 2 0 0 2 2 2 0 Cyclin, N-terminal domain zinc_ribbon_5 PF13719.6 gi|385803088|ref|YP_005839488.1| - 0.14 11.9 1.2 0.29 10.9 1.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|385803088|ref|YP_005839488.1| - 0.3 11.3 1.4 0.52 10.5 1.4 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn-ribbon_8 PF09723.10 gi|385803088|ref|YP_005839488.1| - 1.5 9.0 5.0 2.2 8.5 0.8 2.4 1 1 1 2 2 2 0 Zinc ribbon domain NUDIX PF00293.28 gi|385803089|ref|YP_005839489.1| - 9.7e-11 41.8 0.1 1.5e-10 41.3 0.1 1.3 1 1 0 1 1 1 1 NUDIX domain Staphylcoagulse PF04022.12 gi|385803089|ref|YP_005839489.1| - 0.051 13.1 0.7 0.11 12.1 0.7 1.5 1 0 0 1 1 1 0 Staphylocoagulase repeat Asn_synthase PF00733.21 gi|385803090|ref|YP_005839490.1| - 3.2e-29 102.7 0.0 4.2e-16 59.6 0.0 2.1 1 1 1 2 2 2 2 Asparagine synthase OrfB_IS605 PF01385.19 gi|385803090|ref|YP_005839490.1| - 0.11 12.7 3.7 6.7 7.0 0.3 2.3 2 0 0 2 2 2 0 Probable transposase PHP_C PF13263.6 gi|385803091|ref|YP_005839491.1| - 5.5e-21 74.1 0.8 5.7e-20 70.8 0.3 2.2 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|385803091|ref|YP_005839491.1| - 2.3e-07 31.3 0.1 3.2e-07 30.8 0.1 1.5 1 1 0 1 1 1 1 PHP domain AIRS PF00586.24 gi|385803092|ref|YP_005839492.1| - 5.5e-42 142.3 4.8 1.6e-23 83.2 0.1 3.1 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|385803092|ref|YP_005839492.1| - 2.1e-36 125.4 3.2 4.1e-30 105.0 0.6 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain FGAR-AT_linker PF18072.1 gi|385803092|ref|YP_005839492.1| - 3.9e-06 27.3 0.1 8.3e-06 26.2 0.1 1.6 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain His_biosynth PF00977.21 gi|385803094|ref|YP_005839494.1| - 5.4e-78 261.6 0.1 6.2e-78 261.4 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 gi|385803094|ref|YP_005839494.1| - 2.6e-07 30.3 1.9 2.1e-05 24.1 0.3 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase Dus PF01207.17 gi|385803094|ref|YP_005839494.1| - 3.8e-06 26.2 0.0 0.00056 19.1 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|385803094|ref|YP_005839494.1| - 9.3e-06 25.1 0.7 0.00061 19.2 0.1 2.1 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG G3P_antiterm PF04309.12 gi|385803094|ref|YP_005839494.1| - 0.0013 18.1 0.0 0.0025 17.3 0.0 1.5 1 0 0 1 1 1 1 Glycerol-3-phosphate responsive antiterminator IMPDH PF00478.25 gi|385803094|ref|YP_005839494.1| - 0.016 14.2 0.3 0.033 13.2 0.1 1.5 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|385803094|ref|YP_005839494.1| - 0.043 13.0 0.0 0.066 12.3 0.0 1.2 1 0 0 1 1 1 0 Conserved region in glutamate synthase PcrB PF01884.17 gi|385803094|ref|YP_005839494.1| - 0.047 13.2 0.1 0.074 12.5 0.1 1.3 1 0 0 1 1 1 0 PcrB family DHO_dh PF01180.21 gi|385803094|ref|YP_005839494.1| - 0.065 12.4 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase TMP-TENI PF02581.17 gi|385803094|ref|YP_005839494.1| - 0.086 12.2 0.1 0.52 9.6 0.0 2.1 2 1 0 2 2 2 0 Thiamine monophosphate synthase RNA_pol_L_2 PF13656.6 gi|385803095|ref|YP_005839495.1| - 6.2e-15 54.7 0.0 7.3e-15 54.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|385803095|ref|YP_005839495.1| - 0.0011 18.3 0.0 0.0015 18.0 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Lactamase_B PF00753.27 gi|385803096|ref|YP_005839496.1| - 4e-24 85.7 4.6 7.6e-24 84.8 4.6 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|385803096|ref|YP_005839496.1| - 2.7e-07 30.3 1.0 4.9e-07 29.5 1.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|385803096|ref|YP_005839496.1| - 0.02 14.3 0.1 0.034 13.6 0.1 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Gallidermin PF02052.15 gi|385803097|ref|YP_005839497.1| - 0.2 12.0 0.1 0.39 11.1 0.1 1.5 1 0 0 1 1 1 0 Gallidermin AMP-binding PF00501.28 gi|385803098|ref|YP_005839498.1| - 8.8e-92 307.9 0.4 1e-91 307.7 0.4 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|385803098|ref|YP_005839498.1| - 1e-19 71.3 0.1 2e-19 70.4 0.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Metallophos PF00149.28 gi|385803099|ref|YP_005839499.1| - 2.8e-11 44.3 0.7 4.9e-11 43.5 0.7 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|385803099|ref|YP_005839499.1| - 4.5e-11 43.2 0.3 1.1e-10 42.0 0.3 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain AAA_23 PF13476.6 gi|385803100|ref|YP_005839500.1| - 9e-22 78.6 9.3 9e-22 78.6 9.3 6.1 1 1 4 5 5 4 1 AAA domain AAA_15 PF13175.6 gi|385803100|ref|YP_005839500.1| - 3.3e-14 53.4 12.4 2e-13 50.8 0.0 3.5 1 1 1 2 2 1 1 AAA ATPase domain SMC_N PF02463.19 gi|385803100|ref|YP_005839500.1| - 2.7e-13 49.9 46.9 2e-11 43.8 46.9 2.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|385803100|ref|YP_005839500.1| - 1.5e-09 38.1 9.4 9.8e-06 25.6 2.8 3.2 3 1 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_27 PF13514.6 gi|385803100|ref|YP_005839500.1| - 6.5e-09 35.7 0.0 6.5e-09 35.7 0.0 6.8 5 3 3 8 8 8 1 AAA domain AAA_13 PF13166.6 gi|385803100|ref|YP_005839500.1| - 2.2e-08 33.3 9.5 2.2e-08 33.3 9.5 4.9 2 1 1 4 4 4 2 AAA domain DUF3584 PF12128.8 gi|385803100|ref|YP_005839500.1| - 5.8e-08 30.8 98.0 0.00017 19.3 41.3 4.0 3 1 1 4 4 4 3 Protein of unknown function (DUF3584) AAA_29 PF13555.6 gi|385803100|ref|YP_005839500.1| - 5.3e-05 22.9 0.0 0.00011 21.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|385803100|ref|YP_005839500.1| - 0.0067 16.6 0.1 0.035 14.4 0.0 2.3 2 0 0 2 2 1 1 Putative exonuclease SbcCD, C subunit DUF4988 PF16378.5 gi|385803100|ref|YP_005839500.1| - 0.026 14.2 26.0 0.71 9.5 0.8 5.7 4 1 1 5 5 5 0 Domain of unknown function Atg14 PF10186.9 gi|385803100|ref|YP_005839500.1| - 0.046 12.8 83.1 0.016 14.3 11.5 5.4 1 1 4 5 5 5 0 Vacuolar sorting 38 and autophagy-related subunit 14 Laminin_II PF06009.12 gi|385803100|ref|YP_005839500.1| - 0.14 12.2 66.7 0.085 12.9 3.1 6.4 2 1 3 6 6 6 0 Laminin Domain II ABC_tran PF00005.27 gi|385803100|ref|YP_005839500.1| - 0.16 12.5 0.0 0.16 12.5 0.0 5.9 2 1 0 2 2 1 0 ABC transporter Spc7 PF08317.11 gi|385803100|ref|YP_005839500.1| - 0.2 10.5 106.8 0.062 12.2 16.6 6.4 1 1 4 6 6 6 0 Spc7 kinetochore protein TPR_8 PF13181.6 gi|385803100|ref|YP_005839500.1| - 0.25 11.6 1.0 18 5.8 0.0 3.3 2 0 0 2 2 2 0 Tetratricopeptide repeat CENP-F_leu_zip PF10473.9 gi|385803100|ref|YP_005839500.1| - 0.51 10.4 103.1 0.033 14.2 6.7 7.4 2 2 2 6 6 6 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_22 PF13401.6 gi|385803100|ref|YP_005839500.1| - 0.52 10.6 0.0 0.52 10.6 0.0 3.4 3 1 1 4 4 4 0 AAA domain GAS PF13851.6 gi|385803100|ref|YP_005839500.1| - 1.2 8.4 94.1 0.015 14.7 22.3 6.1 2 2 4 6 6 6 0 Growth-arrest specific micro-tubule binding NPV_P10 PF05531.12 gi|385803100|ref|YP_005839500.1| - 1.6 9.2 42.6 0.094 13.2 2.2 7.8 4 2 3 7 7 7 0 Nucleopolyhedrovirus P10 protein EzrA PF06160.12 gi|385803100|ref|YP_005839500.1| - 1.8 6.6 86.1 0.18 9.9 25.0 4.3 2 2 1 3 3 3 0 Septation ring formation regulator, EzrA MukB PF04310.12 gi|385803100|ref|YP_005839500.1| - 2.8 7.7 0.0 2.8 7.7 0.0 5.0 3 1 2 5 5 5 0 MukB N-terminal TPR_MLP1_2 PF07926.12 gi|385803100|ref|YP_005839500.1| - 3.9 7.5 113.2 2.6 8.1 8.9 7.4 1 1 5 6 6 6 0 TPR/MLP1/MLP2-like protein Fez1 PF06818.15 gi|385803100|ref|YP_005839500.1| - 4 7.8 93.2 0.62 10.5 22.8 4.7 1 1 3 4 4 4 0 Fez1 Rad50_zn_hook PF04423.14 gi|385803100|ref|YP_005839500.1| - 5.5 6.9 11.3 0.39 10.6 0.2 4.7 4 0 0 4 4 3 0 Rad50 zinc hook motif MobC PF05713.11 gi|385803100|ref|YP_005839500.1| - 6 7.4 8.4 22 5.6 0.6 4.8 3 0 0 3 3 3 0 Bacterial mobilisation protein (MobC) DUF1664 PF07889.12 gi|385803100|ref|YP_005839500.1| - 6.1 6.9 57.9 0.42 10.7 2.3 8.2 3 3 5 9 9 9 0 Protein of unknown function (DUF1664) HSBP1 PF06825.12 gi|385803100|ref|YP_005839500.1| - 7.9 6.4 15.1 0.17 11.7 0.9 4.5 4 1 0 4 4 3 0 Heat shock factor binding protein 1 Zip PF02535.22 gi|385803102|ref|YP_005839502.1| - 0.061 12.5 1.2 5.7 6.1 1.6 2.0 1 1 1 2 2 2 0 ZIP Zinc transporter DNA_pol_B PF00136.21 gi|385803104|ref|YP_005839504.1| - 7.9e-35 120.4 0.0 4.4e-15 55.4 0.0 3.2 3 0 0 3 3 3 3 DNA polymerase family B Intein_splicing PF14890.6 gi|385803104|ref|YP_005839504.1| - 2.9e-27 95.3 0.0 5.3e-11 42.6 0.0 5.0 4 1 0 4 4 4 4 Intein splicing domain DNA_pol_B_exo1 PF03104.19 gi|385803104|ref|YP_005839504.1| - 4.5e-25 88.5 0.1 1.9e-17 63.4 0.0 2.9 2 1 0 2 2 2 2 DNA polymerase family B, exonuclease domain Hint PF01079.20 gi|385803104|ref|YP_005839504.1| - 1.5e-11 44.2 0.0 3.4e-05 23.4 0.0 2.4 2 0 0 2 2 2 2 Hint module LAGLIDADG_3 PF14528.6 gi|385803104|ref|YP_005839504.1| - 1.7e-08 34.7 0.0 0.52 10.7 0.0 4.8 4 0 0 4 4 4 2 LAGLIDADG-like domain Hint_2 PF13403.6 gi|385803104|ref|YP_005839504.1| - 6.6e-07 29.7 0.1 4e-05 23.9 0.0 3.3 3 1 0 3 3 3 1 Hint domain Hom_end_hint PF05203.16 gi|385803104|ref|YP_005839504.1| - 0.00032 20.7 0.1 0.044 13.7 0.0 2.6 2 0 0 2 2 2 1 Hom_end-associated Hint Hom_end PF05204.14 gi|385803104|ref|YP_005839504.1| - 0.00033 20.8 0.0 0.017 15.3 0.0 3.0 3 0 0 3 3 3 1 Homing endonuclease PT-HINT PF07591.11 gi|385803104|ref|YP_005839504.1| - 0.12 12.6 0.1 0.85 9.9 0.0 2.4 2 0 0 2 2 2 0 Pretoxin HINT domain ABC_tran PF00005.27 gi|385803105|ref|YP_005839505.1| - 2.1e-14 54.2 0.2 1.1e-13 51.8 0.2 2.0 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|385803105|ref|YP_005839505.1| - 2.6e-05 23.8 0.6 0.1 12.0 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|385803105|ref|YP_005839505.1| - 0.00023 21.1 0.3 0.019 14.8 0.3 2.3 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|385803105|ref|YP_005839505.1| - 0.0005 20.5 0.1 0.18 12.2 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|385803105|ref|YP_005839505.1| - 0.0021 18.1 0.3 1.4 8.9 0.0 2.5 2 1 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|385803105|ref|YP_005839505.1| - 0.004 16.9 0.0 0.0077 15.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|385803105|ref|YP_005839505.1| - 0.0061 17.1 4.7 0.27 11.7 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|385803105|ref|YP_005839505.1| - 0.013 15.2 0.0 0.03 14.0 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_16 PF13191.6 gi|385803105|ref|YP_005839505.1| - 0.018 15.4 0.7 0.2 12.1 0.7 2.2 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|385803105|ref|YP_005839505.1| - 0.11 12.8 0.5 2.8 8.2 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|385803105|ref|YP_005839505.1| - 0.11 12.8 0.2 2.2 8.5 0.0 2.6 3 0 0 3 3 3 0 AAA domain AAA_18 PF13238.6 gi|385803105|ref|YP_005839505.1| - 0.11 13.0 0.2 0.66 10.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|385803105|ref|YP_005839505.1| - 0.12 11.9 1.2 0.17 11.4 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|385803105|ref|YP_005839505.1| - 0.16 11.6 0.0 0.38 10.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|385803105|ref|YP_005839505.1| - 0.17 12.1 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain POX PF07526.11 gi|385803105|ref|YP_005839505.1| - 0.17 12.5 0.2 0.31 11.6 0.2 1.3 1 0 0 1 1 1 0 Associated with HOX UPF0051 PF01458.17 gi|385803106|ref|YP_005839506.1| - 3.4e-72 242.7 0.5 4.6e-72 242.2 0.5 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.17 gi|385803107|ref|YP_005839507.1| - 3.8e-60 203.3 0.2 5e-60 202.9 0.2 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Not3 PF04065.15 gi|385803108|ref|YP_005839508.1| - 0.07 12.6 2.2 0.072 12.5 1.3 1.5 1 1 0 1 1 1 0 Not1 N-terminal domain, CCR4-Not complex component Fe_dep_repress PF01325.19 gi|385803109|ref|YP_005839509.1| - 6.5e-15 55.1 0.1 1.3e-14 54.2 0.0 1.5 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|385803109|ref|YP_005839509.1| - 1.4e-09 37.9 0.0 3.5e-09 36.6 0.1 1.6 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.7 gi|385803109|ref|YP_005839509.1| - 1.8e-05 24.5 0.0 3e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|385803109|ref|YP_005839509.1| - 2.5e-05 23.8 0.0 5e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|385803109|ref|YP_005839509.1| - 4.5e-05 23.4 0.0 7.7e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|385803109|ref|YP_005839509.1| - 0.0002 21.2 0.0 0.00035 20.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|385803109|ref|YP_005839509.1| - 0.00047 20.2 0.0 0.0012 18.9 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|385803109|ref|YP_005839509.1| - 0.00083 19.8 0.0 0.0015 19.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|385803109|ref|YP_005839509.1| - 0.0038 17.5 0.0 0.0072 16.7 0.0 1.4 1 1 0 1 1 1 1 Transcriptional regulator TrmB PF01978.19 gi|385803109|ref|YP_005839509.1| - 0.0062 16.4 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FeoC PF09012.10 gi|385803109|ref|YP_005839509.1| - 0.0081 16.2 0.0 0.086 12.9 0.0 2.2 2 0 0 2 2 2 1 FeoC like transcriptional regulator FtsK_gamma PF09397.10 gi|385803109|ref|YP_005839509.1| - 0.015 15.1 0.0 0.03 14.1 0.0 1.5 1 0 0 1 1 1 0 Ftsk gamma domain HTH_13 PF11972.8 gi|385803109|ref|YP_005839509.1| - 0.031 14.4 0.0 0.055 13.5 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_12 PF08461.10 gi|385803109|ref|YP_005839509.1| - 0.031 14.2 0.3 0.093 12.7 0.1 2.0 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain DUF1405 PF07187.11 gi|385803110|ref|YP_005839510.1| - 1.3e-50 171.4 10.4 1.7e-50 171.0 10.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) HD PF01966.22 gi|385803111|ref|YP_005839511.1| - 3.8e-12 46.5 0.3 1.4e-11 44.7 0.1 1.8 2 0 0 2 2 2 1 HD domain DUF4618 PF15397.6 gi|385803111|ref|YP_005839511.1| - 0.072 12.5 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) DUF305 PF03713.13 gi|385803111|ref|YP_005839511.1| - 0.089 12.9 0.8 0.16 12.1 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF305) GATase_2 PF00310.21 gi|385803112|ref|YP_005839512.1| - 6e-158 526.0 0.0 9.7e-158 525.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Glu_synthase PF01645.17 gi|385803112|ref|YP_005839512.1| - 1.7e-150 501.3 0.3 1.3e-148 495.0 0.1 2.2 2 0 0 2 2 2 2 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|385803112|ref|YP_005839512.1| - 2.8e-114 381.3 0.0 7.2e-114 380.0 0.0 1.7 2 0 0 2 2 2 1 Glutamate synthase central domain GXGXG PF01493.19 gi|385803112|ref|YP_005839512.1| - 1.8e-78 262.5 7.7 3.7e-78 261.5 7.7 1.5 1 0 0 1 1 1 1 GXGXG motif FMN_dh PF01070.18 gi|385803112|ref|YP_005839512.1| - 0.00062 18.9 4.8 0.025 13.6 1.7 3.1 3 0 0 3 3 3 2 FMN-dependent dehydrogenase NMO PF03060.15 gi|385803112|ref|YP_005839512.1| - 0.015 14.7 0.8 0.028 13.8 0.8 1.3 1 0 0 1 1 1 0 Nitronate monooxygenase HGTP_anticodon PF03129.20 gi|385803113|ref|YP_005839513.1| - 1.9e-23 82.4 0.1 3.6e-23 81.5 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|385803113|ref|YP_005839513.1| - 1.4e-18 67.5 0.0 6.1e-18 65.4 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) ProRS-C_1 PF09180.11 gi|385803113|ref|YP_005839513.1| - 3.5e-16 59.2 1.0 1.2e-15 57.4 1.0 1.9 1 1 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal KH_7 PF17214.3 gi|385803114|ref|YP_005839514.1| - 4.9e-31 106.5 0.1 9.6e-29 99.2 0.1 2.7 2 0 0 2 2 2 1 KH domain Beta-Casp PF10996.8 gi|385803114|ref|YP_005839514.1| - 1.9e-22 79.6 0.0 3.9e-22 78.6 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.27 gi|385803114|ref|YP_005839514.1| - 4e-14 53.1 2.7 1.9e-13 50.9 2.7 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|385803114|ref|YP_005839514.1| - 1.1e-13 50.9 0.0 2.6e-13 49.7 0.0 1.7 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|385803114|ref|YP_005839514.1| - 8e-11 41.7 0.0 1.3e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|385803114|ref|YP_005839514.1| - 5e-09 36.0 0.1 9.5e-09 35.1 0.1 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|385803114|ref|YP_005839514.1| - 9.3e-08 31.8 0.0 5.8e-07 29.3 0.0 2.1 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.6 gi|385803114|ref|YP_005839514.1| - 0.00015 21.7 0.3 0.00033 20.6 0.0 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_1 PF00013.29 gi|385803114|ref|YP_005839514.1| - 0.0058 16.4 0.1 0.018 14.8 0.1 1.9 2 0 0 2 2 2 1 KH domain KH_4 PF13083.6 gi|385803114|ref|YP_005839514.1| - 0.016 15.0 0.1 0.039 13.8 0.1 1.6 1 0 0 1 1 1 0 KH domain HpcH_HpaI PF03328.14 gi|385803118|ref|YP_005839518.1| - 9.3e-07 28.2 0.0 2.6e-06 26.7 0.0 1.8 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Ntox5 PF15543.6 gi|385803118|ref|YP_005839518.1| - 0.063 13.1 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial toxin 5 Glyoxalase PF00903.25 gi|385803119|ref|YP_005839519.1| - 4.8e-15 55.9 0.2 5.6e-15 55.7 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|385803119|ref|YP_005839519.1| - 2.6e-11 43.8 0.2 3.2e-10 40.2 0.1 1.9 1 1 1 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|385803119|ref|YP_005839519.1| - 1.4e-05 25.8 0.1 1.7e-05 25.5 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|385803119|ref|YP_005839519.1| - 0.0013 18.7 0.0 0.0021 18.0 0.0 1.4 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|385803119|ref|YP_005839519.1| - 0.0016 18.6 0.1 0.058 13.5 0.1 2.1 2 0 0 2 2 2 1 Glyoxalase-like domain FAA_hydrolase PF01557.18 gi|385803120|ref|YP_005839520.1| - 2.2e-47 161.6 0.0 2.7e-47 161.2 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family UAF_Rrn10 PF05234.11 gi|385803121|ref|YP_005839521.1| - 0.061 13.6 0.9 0.076 13.3 0.9 1.1 1 0 0 1 1 1 0 UAF complex subunit Rrn10 Sigma70_ner PF04546.13 gi|385803121|ref|YP_005839521.1| - 1.1 9.1 3.8 1.3 8.9 3.8 1.1 1 0 0 1 1 1 0 Sigma-70, non-essential region TrmB PF01978.19 gi|385803122|ref|YP_005839522.1| - 7.1e-16 57.9 0.0 9.7e-16 57.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|385803122|ref|YP_005839522.1| - 1e-05 25.3 0.0 1.8e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|385803122|ref|YP_005839522.1| - 1.4e-05 24.9 0.0 2.5e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|385803122|ref|YP_005839522.1| - 3.8e-05 23.4 0.0 6.2e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Penicillinase_R PF03965.16 gi|385803122|ref|YP_005839522.1| - 0.00012 22.4 0.0 0.00016 22.0 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_20 PF12840.7 gi|385803122|ref|YP_005839522.1| - 0.00018 21.5 0.0 0.0003 20.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|385803122|ref|YP_005839522.1| - 0.00031 20.6 0.0 0.00051 19.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|385803122|ref|YP_005839522.1| - 0.0012 18.4 0.0 0.0021 17.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RuvB_C PF05491.13 gi|385803122|ref|YP_005839522.1| - 0.0018 18.1 0.0 0.0029 17.5 0.0 1.3 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain HARE-HTH PF05066.13 gi|385803122|ref|YP_005839522.1| - 0.0038 17.6 0.0 0.0083 16.5 0.0 1.5 1 0 0 1 1 1 1 HB1, ASXL, restriction endonuclease HTH domain HTH_5 PF01022.20 gi|385803122|ref|YP_005839522.1| - 0.0085 15.9 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|385803122|ref|YP_005839522.1| - 0.0098 16.4 0.0 0.014 15.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rio2_N PF09202.11 gi|385803122|ref|YP_005839522.1| - 0.018 15.3 0.1 0.045 14.0 0.1 1.7 1 1 0 1 1 1 0 Rio2, N-terminal Rrf2 PF02082.20 gi|385803122|ref|YP_005839522.1| - 0.03 14.7 0.0 0.051 13.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|385803122|ref|YP_005839522.1| - 0.034 14.1 0.0 0.053 13.5 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_28 PF13518.6 gi|385803122|ref|YP_005839522.1| - 0.043 14.0 0.0 0.083 13.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|385803122|ref|YP_005839522.1| - 0.046 13.9 0.0 0.085 13.1 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF4777 PF16007.5 gi|385803122|ref|YP_005839522.1| - 0.065 13.5 0.1 0.18 12.1 0.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4777) HTH_23 PF13384.6 gi|385803122|ref|YP_005839522.1| - 0.071 12.9 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain DUF4423 PF14394.6 gi|385803122|ref|YP_005839522.1| - 0.09 12.5 0.1 0.25 11.0 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) SMC_ScpB PF04079.16 gi|385803122|ref|YP_005839522.1| - 0.094 12.3 0.2 0.35 10.5 0.1 1.9 1 1 1 2 2 2 0 Segregation and condensation complex subunit ScpB HTH_29 PF13551.6 gi|385803122|ref|YP_005839522.1| - 0.14 12.2 0.0 0.28 11.2 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn helix eIF-1a PF01176.19 gi|385803123|ref|YP_005839523.1| - 4.7e-21 74.4 0.6 5.9e-21 74.0 0.6 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Glycos_transf_1 PF00534.20 gi|385803124|ref|YP_005839524.1| - 2.4e-08 33.7 0.0 4.4e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|385803124|ref|YP_005839524.1| - 2.9e-06 27.7 0.0 5.1e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|385803124|ref|YP_005839524.1| - 0.093 12.7 0.3 7.6 6.5 0.0 2.8 3 0 0 3 3 3 0 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|385803124|ref|YP_005839524.1| - 0.12 12.8 0.0 0.26 11.7 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Aldo_ket_red PF00248.21 gi|385803125|ref|YP_005839525.1| - 6.5e-44 150.3 0.0 8.5e-41 140.1 0.0 3.0 2 1 0 2 2 2 1 Aldo/keto reductase family GFO_IDH_MocA PF01408.22 gi|385803125|ref|YP_005839525.1| - 4.1e-19 69.6 0.0 5.4e-18 66.0 0.0 2.4 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 gi|385803125|ref|YP_005839525.1| - 7.8e-10 39.4 0.3 1.7e-09 38.3 0.3 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|385803125|ref|YP_005839525.1| - 0.029 14.6 1.6 2 8.7 0.9 3.7 3 1 1 4 4 4 0 Saccharopine dehydrogenase NADP binding domain ROKNT PF08067.11 gi|385803125|ref|YP_005839525.1| - 0.04 14.2 0.4 0.089 13.1 0.4 1.5 1 0 0 1 1 1 0 ROKNT (NUC014) domain CDP-OH_P_transf PF01066.21 gi|385803126|ref|YP_005839526.1| - 4e-07 30.7 1.2 4e-07 30.7 1.2 2.7 3 0 0 3 3 3 1 CDP-alcohol phosphatidyltransferase SK_channel PF03530.14 gi|385803126|ref|YP_005839526.1| - 0.0069 16.4 0.1 0.012 15.6 0.1 1.3 1 0 0 1 1 1 1 Calcium-activated SK potassium channel AAA_16 PF13191.6 gi|385803127|ref|YP_005839527.1| - 4.5e-11 43.4 0.1 1.4e-10 41.8 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|385803127|ref|YP_005839527.1| - 1.3e-07 32.0 0.0 4.8e-07 30.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|385803127|ref|YP_005839527.1| - 0.011 15.7 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Phe_tRNA-synt_N PF02912.18 gi|385803127|ref|YP_005839527.1| - 0.016 15.1 0.0 0.38 10.7 0.0 2.3 2 0 0 2 2 2 0 Aminoacyl tRNA synthetase class II, N-terminal domain HTH_20 PF12840.7 gi|385803127|ref|YP_005839527.1| - 0.1 12.7 0.5 0.32 11.1 0.5 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain Adeno_IVa2 PF02456.15 gi|385803127|ref|YP_005839527.1| - 0.12 11.1 0.0 0.21 10.4 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein HTH_46 PF15977.5 gi|385803127|ref|YP_005839527.1| - 0.15 12.1 0.1 6.5 6.9 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA binding FGGY_N PF00370.21 gi|385803129|ref|YP_005839529.1| - 1.5e-74 250.6 0.0 2.1e-74 250.2 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|385803129|ref|YP_005839529.1| - 1.9e-55 187.7 2.3 2.5e-55 187.3 1.2 1.8 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|385803129|ref|YP_005839529.1| - 0.0011 18.5 0.2 0.0068 15.9 0.0 2.1 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family DAO PF01266.24 gi|385803130|ref|YP_005839530.1| - 4.9e-51 174.4 2.0 6.9e-51 173.9 2.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.15 gi|385803130|ref|YP_005839530.1| - 3.3e-10 40.2 2.2 1e-09 38.5 2.2 1.9 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Pyr_redox_2 PF07992.14 gi|385803130|ref|YP_005839530.1| - 7.9e-07 28.6 1.4 4.6e-06 26.1 0.7 2.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|385803130|ref|YP_005839530.1| - 4.9e-05 22.6 6.7 0.00036 19.7 6.7 2.0 1 1 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.19 gi|385803130|ref|YP_005839530.1| - 0.0016 17.8 1.8 0.066 12.4 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain 3HCDH_N PF02737.18 gi|385803130|ref|YP_005839530.1| - 0.078 12.9 0.4 0.16 11.8 0.4 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|385803130|ref|YP_005839530.1| - 0.11 12.7 1.4 0.36 11.1 1.2 2.0 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|385803130|ref|YP_005839530.1| - 0.96 10.0 3.7 0.59 10.7 1.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|385803131|ref|YP_005839531.1| - 3.6e-42 144.9 0.8 4.7e-42 144.5 0.8 1.1 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|385803131|ref|YP_005839531.1| - 4.6e-06 26.0 0.4 4.6e-06 26.0 0.4 2.4 3 0 0 3 3 3 1 Glucose inhibited division protein A DAO PF01266.24 gi|385803131|ref|YP_005839531.1| - 5.5e-06 26.2 0.5 0.0022 17.7 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|385803131|ref|YP_005839531.1| - 1.4e-05 24.5 0.3 0.0002 20.7 0.0 2.5 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|385803131|ref|YP_005839531.1| - 0.00025 20.6 1.9 0.00034 20.1 1.1 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|385803131|ref|YP_005839531.1| - 0.001 18.4 0.1 0.0032 16.8 0.3 1.6 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|385803131|ref|YP_005839531.1| - 0.0032 16.2 0.2 0.009 14.8 0.1 1.7 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|385803131|ref|YP_005839531.1| - 0.012 15.8 1.3 0.041 14.1 0.5 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|385803131|ref|YP_005839531.1| - 0.012 14.9 0.8 0.012 14.9 0.8 2.0 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|385803131|ref|YP_005839531.1| - 0.023 14.0 0.1 0.044 13.0 0.1 1.4 1 0 0 1 1 1 0 Thi4 family 3HCDH_N PF02737.18 gi|385803131|ref|YP_005839531.1| - 0.036 13.9 0.2 0.061 13.2 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|385803131|ref|YP_005839531.1| - 0.059 12.4 0.2 0.11 11.5 0.2 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein Pyr_redox PF00070.27 gi|385803131|ref|YP_005839531.1| - 0.078 13.5 0.0 0.29 11.7 0.1 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase CCG PF02754.16 gi|385803132|ref|YP_005839532.1| - 3e-19 69.0 0.8 5.1e-09 36.2 0.1 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|385803132|ref|YP_005839532.1| - 2.6e-09 37.4 6.3 2.6e-09 37.4 6.3 3.3 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|385803132|ref|YP_005839532.1| - 3.3e-07 30.7 6.9 3.3e-07 30.7 6.9 3.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|385803132|ref|YP_005839532.1| - 0.00017 22.1 9.8 0.00017 22.1 9.8 3.1 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|385803132|ref|YP_005839532.1| - 0.00045 20.3 8.9 0.00045 20.3 8.9 3.0 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|385803132|ref|YP_005839532.1| - 0.00057 20.0 16.0 0.0078 16.3 12.2 3.7 3 1 1 4 4 4 2 4Fe-4S dicluster domain DUF3390 PF11870.8 gi|385803132|ref|YP_005839532.1| - 0.023 15.0 0.2 0.044 14.2 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3390) Fer4_21 PF14697.6 gi|385803132|ref|YP_005839532.1| - 0.025 14.7 8.0 0.43 10.8 0.9 3.4 3 0 0 3 3 3 0 4Fe-4S dicluster domain zf-CSL PF05207.13 gi|385803132|ref|YP_005839532.1| - 0.24 11.1 0.1 0.24 11.1 0.1 4.2 5 0 0 5 5 4 0 CSL zinc finger Fer4_16 PF13484.6 gi|385803132|ref|YP_005839532.1| - 0.55 11.2 16.7 0.66 11.0 2.0 3.5 3 1 1 4 4 4 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|385803132|ref|YP_005839532.1| - 6.7 6.9 11.2 13 6.0 1.6 3.7 3 1 1 4 4 4 0 4Fe-4S dicluster domain PhoU PF01895.19 gi|385803133|ref|YP_005839533.1| - 7.1e-36 122.6 8.5 7.1e-21 74.5 0.3 2.2 2 0 0 2 2 2 2 PhoU domain TMF_TATA_bd PF12325.8 gi|385803133|ref|YP_005839533.1| - 0.075 13.3 0.6 0.32 11.2 0.1 2.1 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding PAS_9 PF13426.7 gi|385803135|ref|YP_005839535.1| - 7.7e-42 141.8 6.5 3.7e-11 43.2 0.0 7.0 6 0 0 6 6 6 6 PAS domain PAS_3 PF08447.12 gi|385803135|ref|YP_005839535.1| - 5.9e-36 122.6 11.2 6.8e-11 42.3 0.0 7.1 7 0 0 7 7 7 5 PAS fold BAT PF15915.5 gi|385803135|ref|YP_005839535.1| - 6.2e-32 110.6 0.4 3.4e-31 108.2 0.4 2.5 1 0 0 1 1 1 1 GAF and HTH_10 associated domain PAS_4 PF08448.10 gi|385803135|ref|YP_005839535.1| - 5.8e-28 97.3 6.5 2.9e-05 24.3 0.0 7.9 7 0 0 7 7 7 6 PAS fold PAS PF00989.25 gi|385803135|ref|YP_005839535.1| - 2.3e-27 95.2 8.5 2.1e-06 27.7 0.0 8.5 7 2 0 7 7 7 3 PAS fold PAS_8 PF13188.7 gi|385803135|ref|YP_005839535.1| - 2e-24 85.1 3.5 1.4e-07 31.4 0.0 6.2 6 0 0 6 6 6 4 PAS domain HTH_10 PF04967.12 gi|385803135|ref|YP_005839535.1| - 2.1e-16 59.5 0.0 4.8e-16 58.3 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|385803135|ref|YP_005839535.1| - 1.9e-15 57.4 5.2 1.5e-10 41.5 0.1 3.7 3 0 0 3 3 3 3 GAF domain GAF PF01590.26 gi|385803135|ref|YP_005839535.1| - 3.3e-05 24.5 0.0 0.00058 20.5 0.0 3.0 3 0 0 3 3 3 1 GAF domain GAF_3 PF13492.6 gi|385803135|ref|YP_005839535.1| - 0.00043 20.6 0.6 1.3 9.4 0.0 3.7 3 0 0 3 3 3 1 GAF domain DUF2544 PF11245.8 gi|385803135|ref|YP_005839535.1| - 0.0019 17.7 0.0 0.0037 16.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2544) OKR_DC_1_N PF03709.15 gi|385803135|ref|YP_005839535.1| - 0.071 13.4 0.0 0.36 11.1 0.0 2.3 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain HTH_22 PF13309.6 gi|385803135|ref|YP_005839535.1| - 0.13 12.4 0.0 1.9 8.6 0.0 2.6 2 0 0 2 2 2 0 HTH domain TrmB PF01978.19 gi|385803136|ref|YP_005839536.1| - 6.6e-07 29.1 0.0 9.6e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|385803136|ref|YP_005839536.1| - 1.8e-05 24.5 0.0 2.6e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|385803136|ref|YP_005839536.1| - 3.4e-05 23.6 0.0 7e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|385803136|ref|YP_005839536.1| - 0.0001 21.8 0.0 0.0002 20.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|385803136|ref|YP_005839536.1| - 0.00014 21.8 0.0 0.00038 20.4 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|385803136|ref|YP_005839536.1| - 0.0019 18.2 0.0 0.0039 17.1 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_28 PF13518.6 gi|385803136|ref|YP_005839536.1| - 0.0025 17.9 0.0 0.0038 17.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|385803136|ref|YP_005839536.1| - 0.0026 17.5 0.1 0.0043 16.8 0.1 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HxlR PF01638.17 gi|385803136|ref|YP_005839536.1| - 0.0029 17.4 0.0 0.0044 16.9 0.0 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_36 PF13730.6 gi|385803136|ref|YP_005839536.1| - 0.003 17.5 0.0 0.0053 16.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|385803136|ref|YP_005839536.1| - 0.0031 17.3 0.0 0.005 16.6 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|385803136|ref|YP_005839536.1| - 0.0051 16.6 0.1 0.0094 15.8 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_29 PF13551.6 gi|385803136|ref|YP_005839536.1| - 0.006 16.6 0.0 0.0089 16.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix MarR PF01047.22 gi|385803136|ref|YP_005839536.1| - 0.0082 16.1 0.0 0.017 15.1 0.0 1.5 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|385803136|ref|YP_005839536.1| - 0.01 15.8 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family GntR PF00392.21 gi|385803136|ref|YP_005839536.1| - 0.031 13.9 0.0 0.059 13.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 gi|385803136|ref|YP_005839536.1| - 0.05 13.6 0.0 0.088 12.8 0.0 1.4 1 0 0 1 1 1 0 HTH domain FUR PF01475.19 gi|385803136|ref|YP_005839536.1| - 0.063 13.4 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_38 PF13936.6 gi|385803136|ref|YP_005839536.1| - 0.11 12.2 0.3 0.24 11.2 0.3 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain ScsC_N PF18312.1 gi|385803137|ref|YP_005839537.1| - 0.11 12.3 0.4 0.19 11.5 0.4 1.4 1 0 0 1 1 1 0 Copper resistance protein ScsC N-terminal domain HTH_20 PF12840.7 gi|385803138|ref|YP_005839538.1| - 1.1e-05 25.4 0.3 1.6e-05 24.9 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|385803138|ref|YP_005839538.1| - 0.0002 21.1 0.0 0.00029 20.7 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|385803138|ref|YP_005839538.1| - 0.00052 19.8 0.0 0.0008 19.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|385803138|ref|YP_005839538.1| - 0.00073 19.3 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|385803138|ref|YP_005839538.1| - 0.0011 18.8 0.0 0.0018 18.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.6 gi|385803138|ref|YP_005839538.1| - 0.0034 17.3 0.0 0.0038 17.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|385803138|ref|YP_005839538.1| - 0.004 17.0 0.0 0.0064 16.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|385803138|ref|YP_005839538.1| - 0.004 16.7 0.0 0.0091 15.5 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|385803138|ref|YP_005839538.1| - 0.012 15.5 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 HTH domain DprA_WH PF17782.1 gi|385803138|ref|YP_005839538.1| - 0.017 15.2 0.2 0.029 14.5 0.2 1.4 1 1 0 1 1 1 0 DprA winged helix domain Omp28 PF11551.8 gi|385803138|ref|YP_005839538.1| - 0.035 13.9 0.0 0.044 13.6 0.0 1.0 1 0 0 1 1 1 0 Outer membrane protein Omp28 PadR PF03551.14 gi|385803138|ref|YP_005839538.1| - 0.1 12.6 0.0 0.21 11.6 0.0 1.5 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family HTH_29 PF13551.6 gi|385803138|ref|YP_005839538.1| - 0.11 12.5 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix PP_kinase_C_1 PF17941.1 gi|385803139|ref|YP_005839539.1| - 8.5e-69 230.4 0.1 8.5e-69 230.4 0.1 1.8 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 1 PP_kinase_C PF13090.6 gi|385803139|ref|YP_005839539.1| - 1.6e-68 229.6 0.0 1.1e-66 223.5 0.0 2.5 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 2 PP_kinase PF02503.17 gi|385803139|ref|YP_005839539.1| - 2.4e-63 213.4 3.2 3.8e-63 212.7 3.2 1.3 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.6 gi|385803139|ref|YP_005839539.1| - 6.5e-35 119.7 0.0 2.4e-34 117.9 0.0 2.0 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.6 gi|385803139|ref|YP_005839539.1| - 2.3e-11 43.7 0.1 2.4e-07 30.7 0.0 2.9 2 1 0 2 2 2 2 PLD-like domain MR_MLE_C PF13378.6 gi|385803139|ref|YP_005839539.1| - 0.034 13.7 0.3 0.1 12.1 0.3 1.8 1 0 0 1 1 1 0 Enolase C-terminal domain-like zf-TFIIB PF13453.6 gi|385803141|ref|YP_005839541.1| - 3.4e-05 23.1 1.3 5.6e-05 22.4 1.3 1.4 1 0 0 1 1 1 1 Transcription factor zinc-finger zf-FPG_IleRS PF06827.14 gi|385803141|ref|YP_005839541.1| - 0.00039 20.2 1.1 0.00072 19.4 1.1 1.4 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS Lar_restr_allev PF14354.6 gi|385803141|ref|YP_005839541.1| - 0.0012 19.2 0.3 0.002 18.5 0.3 1.6 1 1 0 1 1 1 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|385803141|ref|YP_005839541.1| - 0.0026 17.1 0.5 1 8.9 0.1 2.6 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|385803141|ref|YP_005839541.1| - 0.006 16.3 4.6 0.45 10.3 0.3 2.4 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|385803141|ref|YP_005839541.1| - 0.026 14.6 0.8 0.064 13.3 0.8 1.7 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|385803141|ref|YP_005839541.1| - 0.091 12.9 0.5 0.22 11.7 0.5 1.7 1 0 0 1 1 1 0 Zinc ribbon domain Mcm10 PF09332.11 gi|385803141|ref|YP_005839541.1| - 0.11 11.9 0.7 0.37 10.2 0.0 1.9 1 1 1 2 2 2 0 Mcm10 replication factor OrfB_Zn_ribbon PF07282.11 gi|385803141|ref|YP_005839541.1| - 0.11 12.4 0.3 0.23 11.4 0.3 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Ribosomal_S27e PF01667.17 gi|385803141|ref|YP_005839541.1| - 0.12 12.1 0.7 0.17 11.6 0.7 1.2 1 0 0 1 1 1 0 Ribosomal protein S27 Nudix_N_2 PF14803.6 gi|385803141|ref|YP_005839541.1| - 0.12 12.3 4.0 1.6 8.7 4.2 2.2 1 1 1 2 2 2 0 Nudix N-terminal NOB1_Zn_bind PF08772.11 gi|385803141|ref|YP_005839541.1| - 0.14 12.4 0.7 1.3 9.2 0.7 2.2 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like eIF-5_eIF-2B PF01873.17 gi|385803141|ref|YP_005839541.1| - 0.18 11.7 0.4 0.27 11.1 0.4 1.3 1 0 0 1 1 1 0 Domain found in IF2B/IF5 TF_Zn_Ribbon PF08271.12 gi|385803141|ref|YP_005839541.1| - 0.46 10.0 2.8 0.86 9.2 2.8 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding NOA36 PF06524.12 gi|385803141|ref|YP_005839541.1| - 0.74 9.1 10.1 0.86 8.9 10.1 1.2 1 0 0 1 1 1 0 NOA36 protein zf-NADH-PPase PF09297.11 gi|385803141|ref|YP_005839541.1| - 2.4 7.9 5.8 17 5.1 5.8 2.1 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Actin PF00022.19 gi|385803142|ref|YP_005839542.1| - 0.0077 14.9 0.0 0.18 10.3 0.0 2.2 2 0 0 2 2 2 2 Actin FtsA PF14450.6 gi|385803142|ref|YP_005839542.1| - 0.018 15.4 0.0 0.065 13.7 0.0 1.8 2 0 0 2 2 2 0 Cell division protein FtsA DUF805 PF05656.14 gi|385803143|ref|YP_005839543.1| - 0.76 10.2 2.6 1.3 9.5 2.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF805) DUF58 PF01882.18 gi|385803144|ref|YP_005839544.1| - 1.5e-16 60.4 0.1 2.6e-16 59.6 0.1 1.6 1 1 0 1 1 1 1 Protein of unknown function DUF58 VWA_2 PF13519.6 gi|385803144|ref|YP_005839544.1| - 5.3e-06 27.0 0.0 1.2e-05 25.9 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|385803144|ref|YP_005839544.1| - 0.0081 15.6 0.0 0.27 10.6 0.0 2.2 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein AAA_3 PF07726.11 gi|385803145|ref|YP_005839545.1| - 1.9e-61 205.7 0.1 2.7e-61 205.2 0.1 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|385803145|ref|YP_005839545.1| - 5.5e-21 74.2 0.2 1.1e-20 73.2 0.2 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|385803145|ref|YP_005839545.1| - 5.3e-11 42.7 0.0 9.1e-11 41.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|385803145|ref|YP_005839545.1| - 2.1e-06 27.0 0.0 3.2e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain AAA PF00004.29 gi|385803145|ref|YP_005839545.1| - 2.2e-05 24.9 0.0 4.8e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|385803145|ref|YP_005839545.1| - 0.001 18.8 0.0 0.058 13.1 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|385803145|ref|YP_005839545.1| - 0.0016 18.2 0.0 0.0063 16.2 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_19 PF13245.6 gi|385803145|ref|YP_005839545.1| - 0.029 14.7 0.0 3.7 7.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|385803145|ref|YP_005839545.1| - 0.07 12.5 0.0 0.69 9.2 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|385803145|ref|YP_005839545.1| - 0.086 12.5 0.0 1.1 8.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_lid_8 PF17868.1 gi|385803145|ref|YP_005839545.1| - 0.16 11.9 0.0 0.32 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA lid domain Phage_holin_3_6 PF07332.11 gi|385803146|ref|YP_005839546.1| - 0.0078 16.2 0.3 0.0078 16.2 0.3 2.0 2 0 0 2 2 2 1 Putative Actinobacterial Holin-X, holin superfamily III TMEM51 PF15345.6 gi|385803146|ref|YP_005839546.1| - 0.079 12.8 0.0 0.54 10.1 0.0 2.2 2 0 0 2 2 2 0 Transmembrane protein 51 CENP-F_leu_zip PF10473.9 gi|385803147|ref|YP_005839547.1| - 1e-08 35.3 30.9 5.5e-06 26.5 11.2 2.1 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF1664 PF07889.12 gi|385803147|ref|YP_005839547.1| - 2.9e-08 33.8 14.9 5.1e-05 23.3 6.5 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) bZIP_1 PF00170.21 gi|385803147|ref|YP_005839547.1| - 1.8e-07 31.2 22.0 0.0014 18.6 0.8 4.1 1 1 2 3 3 3 2 bZIP transcription factor ATG16 PF08614.11 gi|385803147|ref|YP_005839547.1| - 2.6e-07 31.1 31.4 3.8e-07 30.5 31.4 1.2 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) DivIC PF04977.15 gi|385803147|ref|YP_005839547.1| - 4.1e-07 29.7 27.6 0.026 14.3 3.1 4.5 1 1 4 5 5 5 3 Septum formation initiator Tropomyosin_1 PF12718.7 gi|385803147|ref|YP_005839547.1| - 4.6e-07 30.1 31.3 0.0015 18.7 2.5 2.1 1 1 1 2 2 2 2 Tropomyosin like YabA PF06156.13 gi|385803147|ref|YP_005839547.1| - 5.7e-07 30.1 22.9 0.00052 20.6 0.6 3.1 2 1 1 3 3 3 2 Initiation control protein YabA PspA_IM30 PF04012.12 gi|385803147|ref|YP_005839547.1| - 1e-06 28.5 23.8 0.0033 17.0 11.1 2.5 1 1 1 2 2 2 2 PspA/IM30 family EzrA PF06160.12 gi|385803147|ref|YP_005839547.1| - 1.4e-06 26.8 18.5 0.00038 18.8 5.4 2.2 1 1 0 2 2 2 2 Septation ring formation regulator, EzrA Laminin_I PF06008.14 gi|385803147|ref|YP_005839547.1| - 1.6e-06 28.0 25.9 1.2e-05 25.2 13.7 2.1 1 1 1 2 2 2 1 Laminin Domain I Spc7 PF08317.11 gi|385803147|ref|YP_005839547.1| - 1.8e-06 27.1 28.6 8.5e-05 21.6 20.0 2.1 1 1 1 2 2 2 2 Spc7 kinetochore protein Tropomyosin PF00261.20 gi|385803147|ref|YP_005839547.1| - 2.4e-06 27.1 24.0 0.00042 19.7 13.9 2.4 1 1 1 2 2 2 2 Tropomyosin ADIP PF11559.8 gi|385803147|ref|YP_005839547.1| - 3.9e-06 27.0 30.0 0.1 12.7 16.9 3.1 1 1 2 3 3 3 3 Afadin- and alpha -actinin-Binding TPR_MLP1_2 PF07926.12 gi|385803147|ref|YP_005839547.1| - 5.1e-06 26.6 34.1 0.051 13.6 11.7 2.9 1 1 1 2 2 2 2 TPR/MLP1/MLP2-like protein HemX PF04375.14 gi|385803147|ref|YP_005839547.1| - 5.3e-06 26.0 23.2 0.00031 20.2 12.7 2.0 1 1 1 2 2 2 2 HemX, putative uroporphyrinogen-III C-methyltransferase DUF3450 PF11932.8 gi|385803147|ref|YP_005839547.1| - 8.1e-06 25.3 25.4 0.00029 20.2 8.8 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF3450) GAS PF13851.6 gi|385803147|ref|YP_005839547.1| - 1.2e-05 24.7 25.4 0.00014 21.2 10.8 2.3 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding BRE1 PF08647.11 gi|385803147|ref|YP_005839547.1| - 1.2e-05 25.2 19.3 3.6e-05 23.8 12.3 3.2 1 1 2 3 3 3 2 BRE1 E3 ubiquitin ligase Uso1_p115_C PF04871.13 gi|385803147|ref|YP_005839547.1| - 1.9e-05 25.0 30.7 0.0025 18.2 11.6 3.0 1 1 2 3 3 3 2 Uso1 / p115 like vesicle tethering protein, C terminal region DUF4201 PF13870.6 gi|385803147|ref|YP_005839547.1| - 2.1e-05 24.3 19.0 0.012 15.4 0.9 2.7 1 1 1 2 2 2 2 Domain of unknown function (DUF4201) ERM PF00769.19 gi|385803147|ref|YP_005839547.1| - 3e-05 24.0 28.1 8.4e-05 22.5 14.8 2.0 1 1 1 2 2 2 1 Ezrin/radixin/moesin family CCDC144C PF14915.6 gi|385803147|ref|YP_005839547.1| - 3.5e-05 23.1 25.7 4.7e-05 22.7 25.7 1.2 1 0 0 1 1 1 1 CCDC144C protein coiled-coil region FlaC_arch PF05377.11 gi|385803147|ref|YP_005839547.1| - 4.6e-05 23.7 28.1 0.031 14.6 2.0 5.0 1 1 5 6 6 6 2 Flagella accessory protein C (FlaC) Syntaxin-6_N PF09177.11 gi|385803147|ref|YP_005839547.1| - 5.3e-05 23.7 23.0 0.00083 19.9 6.0 3.0 1 1 2 3 3 3 1 Syntaxin 6, N-terminal Laminin_II PF06009.12 gi|385803147|ref|YP_005839547.1| - 5.6e-05 23.2 22.4 0.016 15.2 15.4 2.8 1 1 1 2 2 2 2 Laminin Domain II Fez1 PF06818.15 gi|385803147|ref|YP_005839547.1| - 6.9e-05 23.4 26.0 0.00052 20.5 13.6 2.2 1 1 1 2 2 2 2 Fez1 DUF812 PF05667.11 gi|385803147|ref|YP_005839547.1| - 7.7e-05 21.8 25.3 0.0097 14.8 3.0 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF812) AIP3 PF03915.13 gi|385803147|ref|YP_005839547.1| - 7.9e-05 21.9 12.2 0.0001 21.5 12.2 1.2 1 0 0 1 1 1 1 Actin interacting protein 3 UPF0242 PF06785.11 gi|385803147|ref|YP_005839547.1| - 8.7e-05 22.7 24.5 0.00011 22.3 19.9 2.2 1 1 1 2 2 2 2 Uncharacterised protein family (UPF0242) N-terminus bZIP_2 PF07716.15 gi|385803147|ref|YP_005839547.1| - 0.0001 22.3 32.1 0.016 15.3 1.3 5.5 2 1 3 5 5 4 2 Basic region leucine zipper LPP PF04728.13 gi|385803147|ref|YP_005839547.1| - 0.00011 22.5 29.0 0.043 14.2 3.7 4.6 1 1 3 4 4 4 2 Lipoprotein leucine-zipper DUF5082 PF16888.5 gi|385803147|ref|YP_005839547.1| - 0.00012 22.4 21.7 0.0059 16.9 20.6 3.2 1 1 1 2 2 2 1 Domain of unknown function (DUF5082) KASH_CCD PF14662.6 gi|385803147|ref|YP_005839547.1| - 0.00012 22.0 32.8 0.0021 17.9 26.4 2.7 1 1 1 2 2 2 2 Coiled-coil region of CCDC155 or KASH IFT57 PF10498.9 gi|385803147|ref|YP_005839547.1| - 0.00012 21.2 22.5 0.00099 18.2 15.5 2.0 1 1 1 2 2 2 1 Intra-flagellar transport protein 57 DUF2968 PF11180.8 gi|385803147|ref|YP_005839547.1| - 0.00013 21.7 27.8 0.0061 16.2 13.3 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF2968) Filament PF00038.21 gi|385803147|ref|YP_005839547.1| - 0.00014 21.6 26.5 0.011 15.3 13.4 2.5 1 1 1 2 2 2 2 Intermediate filament protein COG2 PF06148.11 gi|385803147|ref|YP_005839547.1| - 0.00015 21.9 19.1 0.11 12.5 1.6 3.1 1 1 2 3 3 3 2 COG (conserved oligomeric Golgi) complex component, COG2 FliJ PF02050.16 gi|385803147|ref|YP_005839547.1| - 0.00022 21.4 23.1 0.18 12.0 16.4 2.4 1 1 1 2 2 2 2 Flagellar FliJ protein DUF4763 PF15960.5 gi|385803147|ref|YP_005839547.1| - 0.00023 20.6 22.5 0.0011 18.4 8.9 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF4763) Taxilin PF09728.9 gi|385803147|ref|YP_005839547.1| - 0.00024 20.4 19.9 0.00024 20.4 19.9 1.9 1 1 1 2 2 2 1 Myosin-like coiled-coil protein DUF4200 PF13863.6 gi|385803147|ref|YP_005839547.1| - 0.00024 21.5 19.0 0.00094 19.6 12.8 2.8 1 1 0 2 2 2 1 Domain of unknown function (DUF4200) TACC_C PF05010.14 gi|385803147|ref|YP_005839547.1| - 0.00025 20.9 17.6 0.00054 19.8 17.6 1.5 1 1 0 1 1 1 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal APG6_N PF17675.1 gi|385803147|ref|YP_005839547.1| - 0.00025 21.6 34.9 0.0051 17.3 6.5 2.6 1 1 1 2 2 2 1 Apg6 coiled-coil region Jnk-SapK_ap_N PF09744.9 gi|385803147|ref|YP_005839547.1| - 0.00029 21.1 30.5 0.0066 16.7 13.7 2.1 1 1 1 2 2 2 1 JNK_SAPK-associated protein-1 HMMR_N PF15905.5 gi|385803147|ref|YP_005839547.1| - 0.00036 20.1 24.9 0.0018 17.8 21.2 2.0 1 1 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal TMF_DNA_bd PF12329.8 gi|385803147|ref|YP_005839547.1| - 0.00036 20.5 3.2 0.00036 20.5 3.2 3.3 1 1 2 3 3 3 1 TATA element modulatory factor 1 DNA binding Seryl_tRNA_N PF02403.22 gi|385803147|ref|YP_005839547.1| - 0.00037 20.7 20.2 0.055 13.7 3.8 2.3 1 1 1 2 2 2 2 Seryl-tRNA synthetase N-terminal domain Exonuc_VII_L PF02601.15 gi|385803147|ref|YP_005839547.1| - 0.00046 19.9 13.3 0.00069 19.3 13.3 1.3 1 0 0 1 1 1 1 Exonuclease VII, large subunit MAD PF05557.13 gi|385803147|ref|YP_005839547.1| - 0.00048 18.7 28.4 0.0016 16.9 28.1 1.9 1 1 0 1 1 1 1 Mitotic checkpoint protein Atg14 PF10186.9 gi|385803147|ref|YP_005839547.1| - 0.00051 19.2 20.5 0.013 14.6 15.1 2.0 1 1 1 2 2 2 2 Vacuolar sorting 38 and autophagy-related subunit 14 Baculo_PEP_C PF04513.12 gi|385803147|ref|YP_005839547.1| - 0.00054 20.0 21.6 0.00058 19.9 13.5 2.2 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus TMPIT PF07851.13 gi|385803147|ref|YP_005839547.1| - 0.00054 19.3 16.7 0.017 14.4 1.0 2.0 1 1 1 2 2 2 2 TMPIT-like protein CENP-H PF05837.12 gi|385803147|ref|YP_005839547.1| - 0.00055 20.3 25.0 0.1 13.0 2.4 3.0 1 1 2 3 3 3 2 Centromere protein H (CENP-H) AAA_13 PF13166.6 gi|385803147|ref|YP_005839547.1| - 0.00061 18.6 15.8 0.0015 17.2 15.9 1.4 1 1 0 1 1 1 1 AAA domain Cep57_CLD_2 PF14197.6 gi|385803147|ref|YP_005839547.1| - 0.00085 19.4 38.7 0.002 18.2 11.9 3.2 1 1 2 3 3 3 2 Centrosome localisation domain of PPC89 HAP1_N PF04849.13 gi|385803147|ref|YP_005839547.1| - 0.00089 18.5 28.6 0.005 16.1 23.5 2.6 1 1 1 2 2 2 1 HAP1 N-terminal conserved region MscS_porin PF12795.7 gi|385803147|ref|YP_005839547.1| - 0.00091 18.8 40.1 0.0011 18.6 37.1 2.0 1 1 1 2 2 2 1 Mechanosensitive ion channel porin domain GIT_CC PF16559.5 gi|385803147|ref|YP_005839547.1| - 0.00092 19.0 3.6 0.00092 19.0 3.6 4.4 1 1 3 4 4 2 1 GIT coiled-coil Rho guanine nucleotide exchange factor BLOC1_2 PF10046.9 gi|385803147|ref|YP_005839547.1| - 0.00095 19.4 22.8 0.0041 17.4 8.0 3.2 1 1 2 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 HrpB7 PF09486.10 gi|385803147|ref|YP_005839547.1| - 0.001 19.5 20.0 0.0038 17.6 17.7 2.6 1 1 0 1 1 1 1 Bacterial type III secretion protein (HrpB7) DUF745 PF05335.13 gi|385803147|ref|YP_005839547.1| - 0.0011 18.7 22.1 0.019 14.7 10.8 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF745) Leu_zip PF15294.6 gi|385803147|ref|YP_005839547.1| - 0.0012 18.5 22.9 0.076 12.5 14.8 2.4 1 1 1 2 2 2 2 Leucine zipper Vps52 PF04129.12 gi|385803147|ref|YP_005839547.1| - 0.0013 17.6 7.4 0.0013 17.6 7.4 1.9 1 1 1 2 2 2 1 Vps52 / Sac2 family DUF2730 PF10805.8 gi|385803147|ref|YP_005839547.1| - 0.0013 18.8 14.9 0.042 13.9 1.4 3.4 1 1 2 3 3 3 1 Protein of unknown function (DUF2730) DegS PF05384.11 gi|385803147|ref|YP_005839547.1| - 0.0015 18.1 19.0 0.13 11.7 12.8 2.4 1 1 1 2 2 2 2 Sensor protein DegS DUF4795 PF16043.5 gi|385803147|ref|YP_005839547.1| - 0.0015 18.2 20.5 0.2 11.2 12.2 2.5 1 1 1 2 2 2 2 Domain of unknown function (DUF4795) PV-1 PF06637.11 gi|385803147|ref|YP_005839547.1| - 0.0015 17.4 1.6 0.0015 17.4 1.6 2.9 1 1 1 3 3 3 1 PV-1 protein (PLVAP) HOOK PF05622.12 gi|385803147|ref|YP_005839547.1| - 0.0019 16.4 28.1 0.34 9.0 15.3 1.8 1 1 0 1 1 1 1 HOOK protein NPV_P10 PF05531.12 gi|385803147|ref|YP_005839547.1| - 0.0019 18.6 20.4 0.51 10.8 1.8 3.4 1 1 2 3 3 3 1 Nucleopolyhedrovirus P10 protein DUF4407 PF14362.6 gi|385803147|ref|YP_005839547.1| - 0.0019 17.6 24.8 0.082 12.2 3.7 2.5 1 1 1 2 2 2 2 Domain of unknown function (DUF4407) KLRAQ PF10205.9 gi|385803147|ref|YP_005839547.1| - 0.0022 18.2 22.8 0.025 14.8 3.4 2.3 1 1 1 2 2 2 1 Predicted coiled-coil domain-containing protein TolA_bind_tri PF16331.5 gi|385803147|ref|YP_005839547.1| - 0.0024 17.9 39.7 0.36 11.0 8.8 4.1 1 1 4 5 5 5 2 TolA binding protein trimerisation SOGA PF11365.8 gi|385803147|ref|YP_005839547.1| - 0.0026 18.8 21.4 2.1 9.5 0.5 3.4 1 1 1 2 2 2 0 Protein SOGA ZapB PF06005.12 gi|385803147|ref|YP_005839547.1| - 0.0027 18.1 39.7 0.056 13.9 8.4 4.1 1 1 2 3 3 2 1 Cell division protein ZapB Prefoldin_2 PF01920.20 gi|385803147|ref|YP_005839547.1| - 0.0027 17.6 25.6 0.21 11.6 0.5 4.0 1 1 4 5 5 5 1 Prefoldin subunit TMF_TATA_bd PF12325.8 gi|385803147|ref|YP_005839547.1| - 0.0028 17.9 29.6 0.049 13.9 0.7 3.2 1 1 1 2 2 2 1 TATA element modulatory factor 1 TATA binding Prominin PF05478.11 gi|385803147|ref|YP_005839547.1| - 0.0028 15.7 17.2 0.016 13.2 17.2 1.9 1 1 0 1 1 1 1 Prominin DUF724 PF05266.14 gi|385803147|ref|YP_005839547.1| - 0.003 17.4 17.1 0.0058 16.5 5.0 2.2 1 1 2 3 3 3 3 Protein of unknown function (DUF724) Lebercilin PF15619.6 gi|385803147|ref|YP_005839547.1| - 0.004 16.8 29.0 0.13 11.9 24.0 2.6 1 1 1 2 2 2 1 Ciliary protein causing Leber congenital amaurosis disease Rootletin PF15035.6 gi|385803147|ref|YP_005839547.1| - 0.0048 16.9 33.1 0.16 11.9 8.0 3.2 1 1 2 3 3 3 1 Ciliary rootlet component, centrosome cohesion Cnn_1N PF07989.11 gi|385803147|ref|YP_005839547.1| - 0.005 17.0 26.2 0.17 12.0 3.9 3.9 1 1 2 3 3 3 1 Centrosomin N-terminal motif 1 RasGAP_C PF03836.15 gi|385803147|ref|YP_005839547.1| - 0.0054 16.9 16.0 0.18 12.0 4.3 3.0 1 1 2 3 3 3 1 RasGAP C-terminus FPP PF05911.11 gi|385803147|ref|YP_005839547.1| - 0.0056 15.0 27.4 0.0089 14.3 27.4 1.3 1 1 0 1 1 1 1 Filament-like plant protein, long coiled-coil Golgin_A5 PF09787.9 gi|385803147|ref|YP_005839547.1| - 0.0058 16.1 29.7 0.29 10.6 20.4 2.0 1 1 1 2 2 2 2 Golgin subfamily A member 5 DivIVA PF05103.13 gi|385803147|ref|YP_005839547.1| - 0.0064 16.6 22.8 0.033 14.3 16.0 2.3 1 1 1 2 2 2 1 DivIVA protein JIP_LZII PF16471.5 gi|385803147|ref|YP_005839547.1| - 0.0066 16.6 27.5 0.0095 16.1 3.6 4.1 1 1 3 4 4 4 1 JNK-interacting protein leucine zipper II PEARLI-4 PF05278.12 gi|385803147|ref|YP_005839547.1| - 0.0074 15.9 9.2 0.029 14.0 0.6 2.3 1 1 1 2 2 2 1 Arabidopsis phospholipase-like protein (PEARLI 4) DUF4472 PF14739.6 gi|385803147|ref|YP_005839547.1| - 0.0077 17.0 25.3 0.26 12.0 13.3 2.6 1 1 2 3 3 3 1 Domain of unknown function (DUF4472) DUF4686 PF15742.5 gi|385803147|ref|YP_005839547.1| - 0.0085 15.3 28.7 0.011 14.8 28.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4686) TSC22 PF01166.18 gi|385803147|ref|YP_005839547.1| - 0.0089 16.3 24.8 0.3 11.4 4.3 5.2 1 1 3 4 4 3 1 TSC-22/dip/bun family WXG100 PF06013.12 gi|385803147|ref|YP_005839547.1| - 0.0092 16.2 21.2 0.6 10.4 0.1 4.2 1 1 2 3 3 3 1 Proteins of 100 residues with WXG Tektin PF03148.14 gi|385803147|ref|YP_005839547.1| - 0.0097 14.7 22.0 0.028 13.2 22.1 1.7 1 1 0 1 1 1 1 Tektin family COG5 PF10392.9 gi|385803147|ref|YP_005839547.1| - 0.0098 16.1 14.8 0.33 11.1 1.1 3.0 1 1 2 3 3 3 1 Golgi transport complex subunit 5 Shugoshin_N PF07558.11 gi|385803147|ref|YP_005839547.1| - 0.011 15.6 7.4 0.019 14.8 2.5 4.5 2 1 3 5 5 5 0 Shugoshin N-terminal coiled-coil region Mod_r PF07200.13 gi|385803147|ref|YP_005839547.1| - 0.011 15.8 29.0 0.09 12.9 8.5 2.8 1 1 2 3 3 3 0 Modifier of rudimentary (Mod(r)) protein DUF3584 PF12128.8 gi|385803147|ref|YP_005839547.1| - 0.012 13.1 27.1 0.03 11.9 27.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) Uds1 PF15456.6 gi|385803147|ref|YP_005839547.1| - 0.013 15.7 13.9 0.013 15.7 13.9 2.2 1 1 1 2 2 2 0 Up-regulated During Septation HALZ PF02183.18 gi|385803147|ref|YP_005839547.1| - 0.013 15.7 24.7 0.81 10.0 0.7 4.8 2 2 3 5 5 4 0 Homeobox associated leucine zipper WEMBL PF05701.11 gi|385803147|ref|YP_005839547.1| - 0.014 14.1 19.1 0.042 12.6 16.7 1.6 1 1 0 1 1 1 0 Weak chloroplast movement under blue light HAUS-augmin3 PF14932.6 gi|385803147|ref|YP_005839547.1| - 0.014 15.0 26.8 0.022 14.3 7.6 2.1 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 DUF641 PF04859.12 gi|385803147|ref|YP_005839547.1| - 0.015 15.7 15.9 0.044 14.1 4.2 2.3 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) Macoilin PF09726.9 gi|385803147|ref|YP_005839547.1| - 0.018 13.6 22.9 0.029 13.0 22.7 1.4 1 1 0 1 1 1 0 Macoilin family MctB PF11382.8 gi|385803147|ref|YP_005839547.1| - 0.019 14.7 2.2 0.019 14.7 2.2 4.0 1 1 3 4 4 4 0 Copper transport outer membrane protein, MctB DUF948 PF06103.11 gi|385803147|ref|YP_005839547.1| - 0.02 15.2 13.0 0.65 10.3 0.4 2.8 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) DHR10 PF18595.1 gi|385803147|ref|YP_005839547.1| - 0.02 14.9 34.6 0.24 11.4 16.9 2.8 1 1 0 2 2 2 0 Designed helical repeat protein 10 domain Myosin_tail_1 PF01576.19 gi|385803147|ref|YP_005839547.1| - 0.02 12.7 27.9 0.41 8.4 18.1 1.7 1 1 0 1 1 1 0 Myosin tail Nup54 PF13874.6 gi|385803147|ref|YP_005839547.1| - 0.022 14.8 20.3 0.018 15.2 11.6 2.3 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 Cast PF10174.9 gi|385803147|ref|YP_005839547.1| - 0.023 12.9 22.5 0.024 12.9 14.2 2.3 1 1 1 2 2 2 0 RIM-binding protein of the cytomatrix active zone YojJ PF10372.9 gi|385803147|ref|YP_005839547.1| - 0.025 14.7 9.8 5.5 7.1 1.3 3.4 1 1 1 2 2 2 0 Bacterial membrane-spanning protein N-terminus Spc24 PF08286.11 gi|385803147|ref|YP_005839547.1| - 0.025 14.8 34.2 0.38 11.0 3.6 4.0 1 1 2 3 3 3 0 Spc24 subunit of Ndc80 GrpE PF01025.19 gi|385803147|ref|YP_005839547.1| - 0.028 14.1 25.6 0.064 12.9 0.8 3.1 1 1 2 3 3 3 0 GrpE HIP1_clath_bdg PF16515.5 gi|385803147|ref|YP_005839547.1| - 0.028 15.0 31.0 0.59 10.8 16.4 2.5 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 DASH_Duo1 PF08651.10 gi|385803147|ref|YP_005839547.1| - 0.028 14.2 2.3 0.028 14.2 2.3 3.8 3 1 1 4 4 3 0 DASH complex subunit Duo1 PRKG1_interact PF15898.5 gi|385803147|ref|YP_005839547.1| - 0.029 15.3 28.7 1.2e+03 0.4 28.7 3.0 1 1 0 1 1 0 0 cGMP-dependent protein kinase interacting domain Prefoldin PF02996.17 gi|385803147|ref|YP_005839547.1| - 0.029 14.3 22.0 0.13 12.2 3.4 4.0 1 1 2 4 4 4 0 Prefoldin subunit DUF2353 PF09789.9 gi|385803147|ref|YP_005839547.1| - 0.032 13.6 22.9 0.12 11.7 23.0 1.8 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) DLP_helical PF18709.1 gi|385803147|ref|YP_005839547.1| - 0.034 13.4 19.4 0.48 9.6 2.2 3.2 1 1 2 3 3 3 0 Dynamin-like helical domain PepSY_TM PF03929.16 gi|385803147|ref|YP_005839547.1| - 0.037 13.7 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 PepSY-associated TM region Bacillus_HBL PF05791.11 gi|385803147|ref|YP_005839547.1| - 0.037 13.9 15.7 5.1 6.9 15.7 2.3 1 1 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) CALCOCO1 PF07888.11 gi|385803147|ref|YP_005839547.1| - 0.041 12.7 26.8 0.22 10.3 26.9 1.8 1 1 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like DUF4618 PF15397.6 gi|385803147|ref|YP_005839547.1| - 0.043 13.2 23.0 0.4 10.0 0.5 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) Swi5 PF07061.11 gi|385803147|ref|YP_005839547.1| - 0.044 13.9 21.6 26 5.0 1.8 3.9 1 1 1 2 2 1 0 Swi5 YscO PF07321.12 gi|385803147|ref|YP_005839547.1| - 0.049 13.6 28.4 0.3 11.0 11.7 3.1 1 1 2 3 3 3 0 Type III secretion protein YscO Fib_alpha PF08702.10 gi|385803147|ref|YP_005839547.1| - 0.051 13.7 19.4 5.5 7.2 19.4 2.1 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family BST2 PF16716.5 gi|385803147|ref|YP_005839547.1| - 0.056 14.0 28.1 0.065 13.8 11.6 3.1 1 1 2 3 3 3 0 Bone marrow stromal antigen 2 Rab5-bind PF09311.11 gi|385803147|ref|YP_005839547.1| - 0.06 12.7 27.8 1.2 8.5 20.7 2.3 1 1 1 2 2 2 0 Rabaptin-like protein Snapin_Pallidin PF14712.6 gi|385803147|ref|YP_005839547.1| - 0.062 13.7 21.3 2.3 8.7 4.1 3.2 1 1 2 3 3 3 0 Snapin/Pallidin OmpH PF03938.14 gi|385803147|ref|YP_005839547.1| - 0.065 13.6 26.5 1.7 9.0 21.0 2.4 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) Rabaptin PF03528.15 gi|385803147|ref|YP_005839547.1| - 0.072 11.8 17.4 0.1 11.3 4.2 2.1 1 1 1 2 2 2 0 Rabaptin Mce4_CUP1 PF11887.8 gi|385803147|ref|YP_005839547.1| - 0.076 12.5 5.9 0.095 12.1 5.9 1.2 1 0 0 1 1 1 0 Cholesterol uptake porter CUP1 of Mce4, putative Ax_dynein_light PF10211.9 gi|385803147|ref|YP_005839547.1| - 0.081 12.9 24.3 1.5 8.8 0.9 3.1 1 1 2 3 3 3 0 Axonemal dynein light chain Vps54_N PF10475.9 gi|385803147|ref|YP_005839547.1| - 0.088 12.1 10.1 0.13 11.5 10.1 1.3 1 1 0 1 1 1 0 Vacuolar-sorting protein 54, of GARP complex HMMR_C PF15908.5 gi|385803147|ref|YP_005839547.1| - 0.09 13.0 13.9 0.29 11.4 1.9 2.9 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor C-terminal MCPsignal PF00015.21 gi|385803147|ref|YP_005839547.1| - 0.11 12.3 9.6 0.11 12.3 7.4 2.0 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain KxDL PF10241.9 gi|385803147|ref|YP_005839547.1| - 0.11 12.8 21.2 0.34 11.2 5.6 3.4 1 1 1 3 3 3 0 Uncharacterized conserved protein Spectrin PF00435.21 gi|385803147|ref|YP_005839547.1| - 0.11 12.9 22.4 2.1 8.8 10.5 3.0 1 1 1 2 2 2 0 Spectrin repeat DUF713 PF05218.14 gi|385803147|ref|YP_005839547.1| - 0.13 12.0 10.0 1.1 8.9 4.5 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF713) CLZ PF16526.5 gi|385803147|ref|YP_005839547.1| - 0.13 12.6 24.0 0.82 10.1 1.4 4.0 1 1 2 3 3 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Sec2p PF06428.11 gi|385803147|ref|YP_005839547.1| - 0.13 12.2 30.0 0.062 13.3 6.7 3.9 1 1 3 4 4 4 0 GDP/GTP exchange factor Sec2p DUF1843 PF08898.10 gi|385803147|ref|YP_005839547.1| - 0.13 12.7 7.2 1.9 9.0 0.1 3.6 1 1 2 4 4 3 0 Domain of unknown function (DUF1843) FapA PF03961.13 gi|385803147|ref|YP_005839547.1| - 0.17 10.4 16.9 0.2 10.2 6.7 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A Alanine_zipper PF11839.8 gi|385803147|ref|YP_005839547.1| - 0.18 12.2 16.8 4.5 7.7 1.7 4.3 1 1 4 5 5 5 0 Alanine-zipper, major outer membrane lipoprotein Borrelia_P83 PF05262.11 gi|385803147|ref|YP_005839547.1| - 0.19 10.2 15.7 0.22 10.0 15.7 1.0 1 0 0 1 1 1 0 Borrelia P83/100 protein Phage_GP20 PF06810.11 gi|385803147|ref|YP_005839547.1| - 0.19 11.5 22.3 57 3.5 10.9 3.3 1 1 1 2 2 2 0 Phage minor structural protein GP20 Fzo_mitofusin PF04799.13 gi|385803147|ref|YP_005839547.1| - 0.2 11.2 19.6 0.66 9.5 1.3 2.9 1 1 3 4 4 4 0 fzo-like conserved region HisKA_3 PF07730.13 gi|385803147|ref|YP_005839547.1| - 0.21 12.1 12.0 0.45 11.1 2.2 3.0 1 1 2 3 3 2 0 Histidine kinase CENP-F_N PF10481.9 gi|385803147|ref|YP_005839547.1| - 0.21 11.2 22.5 0.064 12.9 11.6 2.1 1 1 1 2 2 2 0 Cenp-F N-terminal domain SOAR PF16533.5 gi|385803147|ref|YP_005839547.1| - 0.21 11.6 9.8 0.37 10.8 6.1 2.2 1 1 1 2 2 2 0 STIM1 Orai1-activating region SKA1 PF07160.12 gi|385803147|ref|YP_005839547.1| - 0.22 11.3 17.3 0.38 10.6 7.5 2.5 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 1 XhlA PF10779.9 gi|385803147|ref|YP_005839547.1| - 0.22 11.7 19.6 0.53 10.5 1.6 3.9 2 1 2 4 4 4 0 Haemolysin XhlA FH2 PF02181.23 gi|385803147|ref|YP_005839547.1| - 0.24 10.5 14.9 0.11 11.7 3.8 2.2 1 1 2 3 3 3 0 Formin Homology 2 Domain T3SSipB PF16535.5 gi|385803147|ref|YP_005839547.1| - 0.25 11.8 15.5 4 7.9 15.5 2.2 1 1 0 1 1 1 0 Type III cell invasion protein SipB TMCO5 PF14992.6 gi|385803147|ref|YP_005839547.1| - 0.26 10.9 26.7 0.39 10.2 8.9 2.3 1 1 1 2 2 2 0 TMCO5 family LXG PF04740.12 gi|385803147|ref|YP_005839547.1| - 0.26 11.0 21.2 1.3 8.7 15.0 2.4 1 1 1 2 2 2 0 LXG domain of WXG superfamily Surfac_D-trimer PF09006.11 gi|385803147|ref|YP_005839547.1| - 0.31 11.0 3.4 3.3 7.7 0.0 3.6 3 2 1 4 4 2 0 Lung surfactant protein D coiled-coil trimerisation Cob_adeno_trans PF01923.18 gi|385803147|ref|YP_005839547.1| - 0.31 11.2 9.8 3.8 7.6 9.8 2.3 1 1 0 1 1 1 0 Cobalamin adenosyltransferase Gp58 PF07902.11 gi|385803147|ref|YP_005839547.1| - 0.34 9.2 19.1 0.76 8.0 17.9 1.7 1 1 0 1 1 1 0 gp58-like protein COX16 PF14138.6 gi|385803147|ref|YP_005839547.1| - 0.39 11.3 7.2 0.85 10.2 0.1 2.7 1 1 1 2 2 2 0 Cytochrome c oxidase assembly protein COX16 CC2-LZ PF16516.5 gi|385803147|ref|YP_005839547.1| - 0.42 11.0 22.1 21 5.6 5.2 3.4 1 1 1 2 2 2 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator DUF16 PF01519.16 gi|385803147|ref|YP_005839547.1| - 0.44 11.0 20.9 0.46 11.0 9.6 2.4 1 1 1 2 2 2 0 Protein of unknown function DUF16 Sec8_exocyst PF04048.14 gi|385803147|ref|YP_005839547.1| - 0.48 10.3 17.1 0.71 9.8 4.0 2.7 1 1 2 3 3 2 0 Sec8 exocyst complex component specific domain Sec34 PF04136.15 gi|385803147|ref|YP_005839547.1| - 0.49 10.3 20.0 1 9.3 2.0 2.8 1 1 1 2 2 2 0 Sec34-like family Herpes_UL6 PF01763.16 gi|385803147|ref|YP_005839547.1| - 0.5 8.8 18.6 0.58 8.6 11.2 2.0 1 1 1 2 2 2 0 Herpesvirus UL6 like KELK PF15796.5 gi|385803147|ref|YP_005839547.1| - 0.52 10.8 22.7 0.6 10.6 8.1 2.5 1 1 2 3 3 3 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase PI3K_P85_iSH2 PF16454.5 gi|385803147|ref|YP_005839547.1| - 0.53 9.9 23.5 0.32 10.6 2.3 3.1 1 1 2 3 3 3 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF1640 PF07798.11 gi|385803147|ref|YP_005839547.1| - 0.54 10.3 25.8 27 4.7 18.4 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) Fungal_TACC PF12709.7 gi|385803147|ref|YP_005839547.1| - 0.58 10.6 22.6 4.7 7.7 1.0 4.4 1 1 4 5 5 3 0 Fungal Transforming acidic coiled-coil (TACC) proteins SseC PF04888.12 gi|385803147|ref|YP_005839547.1| - 0.59 9.7 13.5 0.51 9.9 7.7 2.1 1 1 1 2 2 2 0 Secretion system effector C (SseC) like family Lectin_N PF03954.14 gi|385803147|ref|YP_005839547.1| - 0.59 9.9 19.2 2.7 7.8 0.9 2.9 1 1 2 3 3 3 0 Hepatic lectin, N-terminal domain CEP63 PF17045.5 gi|385803147|ref|YP_005839547.1| - 0.62 9.9 26.1 98 2.7 11.4 2.1 1 1 0 1 1 1 0 Centrosomal protein of 63 kDa CorA PF01544.18 gi|385803147|ref|YP_005839547.1| - 0.64 9.3 21.6 0.17 11.2 14.8 2.1 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Phlebovirus_NSM PF07246.11 gi|385803147|ref|YP_005839547.1| - 0.64 9.3 15.2 2.7 7.3 7.7 2.1 1 1 1 2 2 2 0 Phlebovirus nonstructural protein NS-M DUF2203 PF09969.9 gi|385803147|ref|YP_005839547.1| - 0.66 10.7 15.9 12 6.6 0.4 2.7 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Occludin_ELL PF07303.13 gi|385803147|ref|YP_005839547.1| - 0.68 10.7 11.4 32 5.3 8.0 2.9 1 1 1 2 2 2 0 Occludin homology domain APG17 PF04108.12 gi|385803147|ref|YP_005839547.1| - 0.71 8.9 20.0 1.7 7.7 20.0 1.6 1 1 0 1 1 1 0 Autophagy protein Apg17 DUF4094 PF13334.6 gi|385803147|ref|YP_005839547.1| - 0.71 10.3 15.4 0.51 10.8 1.8 2.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4094) Cluap1 PF10234.9 gi|385803147|ref|YP_005839547.1| - 0.78 9.1 23.2 0.22 10.9 5.1 2.7 1 1 1 2 2 2 0 Clusterin-associated protein-1 DASH_Dam1 PF08653.10 gi|385803147|ref|YP_005839547.1| - 0.8 9.6 19.1 6.5 6.6 1.2 4.9 1 1 5 6 6 5 0 DASH complex subunit Dam1 DUF1515 PF07439.11 gi|385803147|ref|YP_005839547.1| - 0.84 9.7 11.3 2 8.5 1.6 3.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) SlyX PF04102.12 gi|385803147|ref|YP_005839547.1| - 0.85 10.3 30.2 0.37 11.4 0.8 3.8 1 1 2 3 3 3 0 SlyX UPF0449 PF15136.6 gi|385803147|ref|YP_005839547.1| - 0.86 10.1 27.2 0.98 9.9 1.1 4.3 1 1 3 4 4 4 0 Uncharacterised protein family UPF0449 NRBF2 PF08961.10 gi|385803147|ref|YP_005839547.1| - 0.88 9.1 21.4 0.13 11.9 1.2 3.2 1 1 2 3 3 3 0 Nuclear receptor-binding factor 2, autophagy regulator Wtap PF17098.5 gi|385803147|ref|YP_005839547.1| - 1 9.3 28.7 0.48 10.3 16.0 2.9 1 1 1 2 2 2 0 WTAP/Mum2p family Med9 PF07544.13 gi|385803147|ref|YP_005839547.1| - 1 9.5 19.5 2.4 8.3 1.4 3.1 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 CdvA PF18822.1 gi|385803147|ref|YP_005839547.1| - 1.1 9.1 15.1 1.6 8.6 10.6 2.8 1 1 2 3 3 3 0 CdvA-like coiled-coil domain DUF4140 PF13600.6 gi|385803147|ref|YP_005839547.1| - 1.1 9.7 26.6 5.1 7.6 3.0 3.6 1 1 2 3 3 3 0 N-terminal domain of unknown function (DUF4140) THOC7 PF05615.13 gi|385803147|ref|YP_005839547.1| - 1.2 9.4 26.5 1.5 9.1 6.3 3.3 1 1 2 3 3 3 0 Tho complex subunit 7 CtIP_N PF10482.9 gi|385803147|ref|YP_005839547.1| - 1.3 9.1 24.7 6.2 6.9 0.4 3.5 1 1 1 2 2 2 0 Tumour-suppressor protein CtIP N-terminal domain YlqD PF11068.8 gi|385803147|ref|YP_005839547.1| - 1.4 9.3 27.2 1.8e+04 -6.1 27.2 3.0 1 1 0 1 1 0 0 YlqD protein HAUS5 PF14817.6 gi|385803147|ref|YP_005839547.1| - 1.6 7.4 25.5 18 3.9 11.9 2.4 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 5 zf-ZPR1 PF03367.13 gi|385803147|ref|YP_005839547.1| - 1.7 8.5 14.2 2.3 8.1 8.5 2.3 1 1 1 2 2 2 0 ZPR1 zinc-finger domain LMBR1 PF04791.16 gi|385803147|ref|YP_005839547.1| - 1.8 7.4 12.9 4.8 6.0 12.9 1.7 1 1 0 1 1 1 0 LMBR1-like membrane protein ApoO PF09769.9 gi|385803147|ref|YP_005839547.1| - 1.8 8.5 8.0 2e+02 1.9 7.5 3.1 1 1 1 2 2 1 0 Apolipoprotein O kleA_kleC PF17383.2 gi|385803147|ref|YP_005839547.1| - 1.9 8.9 14.9 17 5.8 0.7 4.1 1 1 3 4 4 4 0 Uncharacterized KorC regulated protein A DUF4337 PF14235.6 gi|385803147|ref|YP_005839547.1| - 1.9 8.6 14.6 0.18 11.9 4.8 2.2 1 1 1 2 2 1 0 Domain of unknown function (DUF4337) Tho2 PF11262.8 gi|385803147|ref|YP_005839547.1| - 1.9 7.6 13.8 2.2 7.4 7.5 2.1 1 1 1 2 2 2 0 Transcription factor/nuclear export subunit protein 2 DASH_Spc19 PF08287.11 gi|385803147|ref|YP_005839547.1| - 2 8.3 29.3 0.29 11.0 1.8 3.0 1 1 2 3 3 3 0 Spc19 FAM76 PF16046.5 gi|385803147|ref|YP_005839547.1| - 2.1 7.6 15.5 5.2 6.3 13.6 1.8 1 1 0 1 1 1 0 FAM76 protein CK1gamma_C PF12605.8 gi|385803147|ref|YP_005839547.1| - 2.3 9.4 10.7 8.5 7.6 10.7 2.0 1 1 0 1 1 1 0 Casein kinase 1 gamma C terminal ABC_tran_CTD PF16326.5 gi|385803147|ref|YP_005839547.1| - 2.5 8.4 25.5 3.5 8.0 0.4 3.5 1 1 3 4 4 4 0 ABC transporter C-terminal domain SHE3 PF17078.5 gi|385803147|ref|YP_005839547.1| - 2.6 7.7 26.9 4.5 6.9 13.7 2.4 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 DUF1043 PF06295.12 gi|385803147|ref|YP_005839547.1| - 2.6 8.0 18.7 6.7 6.7 18.7 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1043) Coat_F PF07875.12 gi|385803147|ref|YP_005839547.1| - 2.8 8.2 10.2 7.8 6.8 1.1 3.1 2 1 1 3 3 2 0 Coat F domain CENP-K PF11802.8 gi|385803147|ref|YP_005839547.1| - 2.9 7.4 19.9 1.5 8.3 11.2 2.2 1 1 1 2 2 2 0 Centromere-associated protein K zf-C4H2 PF10146.9 gi|385803147|ref|YP_005839547.1| - 2.9 8.1 14.9 10 6.4 15.0 1.8 1 1 0 1 1 1 0 Zinc finger-containing protein DUF2205 PF10224.9 gi|385803147|ref|YP_005839547.1| - 2.9 7.9 28.5 0.12 12.4 4.3 3.9 1 1 3 4 4 2 0 Short coiled-coil protein Rho_Binding PF08912.11 gi|385803147|ref|YP_005839547.1| - 3.2 8.7 28.6 9.4 7.1 6.7 3.4 1 1 2 3 3 3 0 Rho Binding Vps53_N PF04100.12 gi|385803147|ref|YP_005839547.1| - 3.4 6.6 15.3 1.7 7.5 5.5 2.1 1 1 1 2 2 2 0 Vps53-like, N-terminal SYCE1 PF15233.6 gi|385803147|ref|YP_005839547.1| - 3.4 7.7 23.9 0.083 13.0 8.7 2.2 1 1 1 2 2 2 0 Synaptonemal complex central element protein 1 DUF848 PF05852.11 gi|385803147|ref|YP_005839547.1| - 3.6 7.7 19.1 0.82 9.8 8.3 2.3 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) FUSC PF04632.12 gi|385803147|ref|YP_005839547.1| - 3.9 5.9 13.4 10 4.5 13.4 1.6 1 1 0 1 1 1 0 Fusaric acid resistance protein family End3 PF12761.7 gi|385803147|ref|YP_005839547.1| - 3.9 7.6 26.8 1.8 8.7 4.5 2.9 1 1 1 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 Het-C PF07217.11 gi|385803147|ref|YP_005839547.1| - 3.9 5.9 14.0 3 6.3 4.6 2.0 1 1 1 2 2 2 0 Heterokaryon incompatibility protein Het-C COG6 PF06419.11 gi|385803147|ref|YP_005839547.1| - 4 5.5 18.5 0.49 8.5 3.6 2.2 1 1 1 2 2 2 0 Conserved oligomeric complex COG6 Suppressor_APC PF11414.8 gi|385803147|ref|YP_005839547.1| - 4 7.6 15.9 4.5 7.4 1.4 2.9 3 0 0 3 3 2 0 Adenomatous polyposis coli tumour suppressor protein Fusion_gly PF00523.18 gi|385803147|ref|YP_005839547.1| - 4.2 5.5 8.8 2.7 6.1 1.6 2.2 1 1 1 2 2 2 0 Fusion glycoprotein F0 Cep57_CLD PF14073.6 gi|385803147|ref|YP_005839547.1| - 4.2 7.4 25.6 2.5 8.1 18.4 2.0 1 1 1 2 2 2 0 Centrosome localisation domain of Cep57 USP8_interact PF08941.10 gi|385803147|ref|YP_005839547.1| - 4.2 7.1 16.7 3.7 7.3 5.6 2.9 1 1 2 3 3 3 0 USP8 interacting Troponin PF00992.20 gi|385803147|ref|YP_005839547.1| - 4.2 7.7 18.9 0.26 11.6 8.9 2.2 1 1 1 2 2 1 0 Troponin Flagellin_C PF00700.21 gi|385803147|ref|YP_005839547.1| - 4.3 7.8 21.7 7.5 7.0 2.9 4.2 1 1 3 4 4 4 0 Bacterial flagellin C-terminal helical region GLE1 PF07817.13 gi|385803147|ref|YP_005839547.1| - 4.4 6.4 6.0 11 5.1 2.1 2.2 1 1 1 2 2 2 0 GLE1-like protein FliD_N PF02465.18 gi|385803147|ref|YP_005839547.1| - 5 7.9 16.3 50 4.7 6.5 2.9 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus Sulfatase_C PF14707.6 gi|385803147|ref|YP_005839547.1| - 5.1 7.8 7.7 40 5.0 3.8 2.6 1 1 1 2 2 2 0 C-terminal region of aryl-sulfatase DMPK_coil PF08826.10 gi|385803147|ref|YP_005839547.1| - 5.4 7.2 31.6 3.1 8.0 7.7 5.0 2 1 3 5 5 5 0 DMPK coiled coil domain like V_ATPase_I PF01496.19 gi|385803147|ref|YP_005839547.1| - 5.5 4.8 18.8 4.6 5.0 8.6 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF3138 PF11336.8 gi|385803147|ref|YP_005839547.1| - 5.5 5.5 5.8 16 4.0 5.8 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3138) DUF3847 PF12958.7 gi|385803147|ref|YP_005839547.1| - 5.6 7.2 19.7 14 5.8 3.1 3.6 1 1 0 3 3 3 0 Protein of unknown function (DUF3847) WD40_alt PF14077.6 gi|385803147|ref|YP_005839547.1| - 5.8 6.9 14.0 2.3 8.1 0.1 4.0 3 1 2 5 5 3 0 Alternative WD40 repeat motif Plk4_PB2 PF18409.1 gi|385803147|ref|YP_005839547.1| - 5.9 7.6 9.7 2.1e+03 -0.6 9.7 2.6 1 1 0 1 1 0 0 Polo-like Kinase 4 Polo Box 2 Fmp27_WPPW PF10359.9 gi|385803147|ref|YP_005839547.1| - 6.2 5.6 20.5 1.3 7.8 4.2 2.0 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain DUF4665 PF15679.5 gi|385803147|ref|YP_005839547.1| - 6.7 7.4 8.5 4.8 7.9 1.9 2.6 1 1 1 3 3 3 0 Domain of unknown function (DUF4665) YPEB PF14620.6 gi|385803147|ref|YP_005839547.1| - 6.9 5.9 18.5 7.9 5.7 6.8 2.0 1 1 1 2 2 2 0 YpeB sporulation YtxH PF12732.7 gi|385803147|ref|YP_005839547.1| - 7.2 7.2 8.5 50 4.5 5.6 2.7 2 1 0 2 2 1 0 YtxH-like protein TSNAXIP1_N PF15739.5 gi|385803147|ref|YP_005839547.1| - 7.4 7.0 24.3 4.9 7.6 6.6 3.5 1 1 2 3 3 3 0 Translin-associated factor X-interacting N-terminus EspB PF05802.11 gi|385803147|ref|YP_005839547.1| - 7.4 6.5 17.4 9.8 6.1 2.8 3.0 1 1 2 3 3 3 0 Enterobacterial EspB protein DUF4250 PF14056.6 gi|385803147|ref|YP_005839547.1| - 8 6.5 7.1 5.8 6.9 0.2 2.9 2 2 0 2 2 2 0 Domain of unknown function (DUF4250) bZIP_Maf PF03131.17 gi|385803147|ref|YP_005839547.1| - 8.7 6.9 29.0 4.2 8.0 1.1 4.1 1 1 3 4 4 4 0 bZIP Maf transcription factor Dzip-like_N PF13815.6 gi|385803147|ref|YP_005839547.1| - 9.1 6.3 23.5 3.1 7.8 4.4 3.5 1 1 3 4 4 3 0 Iguana/Dzip1-like DAZ-interacting protein N-terminal Neur_chan_memb PF02932.16 gi|385803147|ref|YP_005839547.1| - 9.5 6.2 5.5 12 5.8 5.5 1.3 1 0 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region RmuC PF02646.16 gi|385803147|ref|YP_005839547.1| - 9.7 5.2 23.0 4 6.5 3.8 2.8 1 1 2 3 3 3 0 RmuC family VWA PF00092.28 gi|385803148|ref|YP_005839548.1| - 1.5e-21 77.4 0.5 7.3e-18 65.4 0.0 2.4 2 0 0 2 2 2 2 von Willebrand factor type A domain VWA_2 PF13519.6 gi|385803148|ref|YP_005839548.1| - 1.4e-15 57.9 1.3 5.1e-15 56.0 0.1 2.6 4 0 0 4 4 4 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|385803148|ref|YP_005839548.1| - 8.7e-15 55.0 0.2 9.1e-13 48.4 0.0 2.3 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|385803148|ref|YP_005839548.1| - 1.6e-08 34.2 0.2 3.6e-07 29.8 0.1 2.3 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein Big_3_5 PF16640.5 gi|385803148|ref|YP_005839548.1| - 4.8e-05 23.5 2.6 4.8e-05 23.5 2.6 3.6 3 1 0 4 4 4 1 Bacterial Ig-like domain (group 3) adh_short_C2 PF13561.6 gi|385803148|ref|YP_005839548.1| - 0.029 13.9 0.5 0.85 9.1 0.1 2.3 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase CBM60 PF16841.5 gi|385803148|ref|YP_005839548.1| - 0.091 13.2 0.4 0.091 13.2 0.4 2.5 3 0 0 3 3 3 0 Ca-dependent carbohydrate-binding module xylan-binding GATase1_like PF07090.11 gi|385803148|ref|YP_005839548.1| - 0.11 11.9 0.2 3.6 7.0 0.1 2.2 2 0 0 2 2 2 0 Putative glutamine amidotransferase DUF1772 PF08592.11 gi|385803148|ref|YP_005839548.1| - 0.19 12.0 1.3 0.44 10.9 0.4 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1772) DUF2201 PF09967.9 gi|385803148|ref|YP_005839548.1| - 0.33 11.1 2.4 0.51 10.5 0.1 2.4 2 1 1 3 3 3 0 VWA-like domain (DUF2201) BatA PF07584.11 gi|385803148|ref|YP_005839548.1| - 3 8.3 5.9 2.9 8.3 0.5 2.8 2 1 1 3 3 3 0 Aerotolerance regulator N-terminal BatA PF07584.11 gi|385803149|ref|YP_005839549.1| - 1.3e-17 63.9 3.6 2.3e-17 63.1 3.6 1.4 1 0 0 1 1 1 1 Aerotolerance regulator N-terminal VWA_2 PF13519.6 gi|385803149|ref|YP_005839549.1| - 1.9e-05 25.2 1.4 5.8e-05 23.7 0.3 2.4 3 0 0 3 3 3 1 von Willebrand factor type A domain Aft1_HRA PF11786.8 gi|385803149|ref|YP_005839549.1| - 0.085 13.2 3.3 1.6 9.2 0.1 2.5 2 0 0 2 2 2 0 Aft1 HRA domain HAD_2 PF13419.6 gi|385803150|ref|YP_005839550.1| - 4.5e-10 39.9 0.0 5.3e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|385803150|ref|YP_005839550.1| - 3.8e-09 37.1 0.0 8.6e-09 36.0 0.0 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|385803150|ref|YP_005839550.1| - 0.0011 19.4 0.0 0.0013 19.2 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|385803150|ref|YP_005839550.1| - 0.08 13.1 0.0 0.35 11.0 0.0 2.0 2 1 1 3 3 3 0 Haloacid dehalogenase-like hydrolase MTHFR PF02219.17 gi|385803151|ref|YP_005839551.1| - 2.4e-14 53.3 0.0 4.8e-14 52.4 0.0 1.5 1 1 0 1 1 1 1 Methylenetetrahydrofolate reductase G_glu_transpept PF01019.21 gi|385803151|ref|YP_005839551.1| - 0.034 12.9 0.0 0.049 12.4 0.0 1.1 1 0 0 1 1 1 0 Gamma-glutamyltranspeptidase AstE_AspA PF04952.14 gi|385803153|ref|YP_005839553.1| - 1.1e-36 126.4 0.0 1.4e-36 126.0 0.0 1.2 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family ATP-synt_ab_Xtn PF16886.5 gi|385803153|ref|YP_005839553.1| - 0.093 12.6 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 ATPsynthase alpha/beta subunit N-term extension Peptidase_M14 PF00246.24 gi|385803153|ref|YP_005839553.1| - 0.14 12.0 0.3 0.42 10.4 0.1 1.8 1 1 0 2 2 2 0 Zinc carboxypeptidase Creatininase PF02633.14 gi|385803154|ref|YP_005839554.1| - 2.1e-65 220.6 2.0 2.4e-65 220.4 2.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Glyco_trans_4_4 PF13579.6 gi|385803154|ref|YP_005839554.1| - 0.0056 17.1 0.6 0.008 16.6 0.6 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain GCV_T PF01571.21 gi|385803155|ref|YP_005839555.1| - 2.6e-79 266.2 0.1 4.1e-79 265.6 0.1 1.3 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain DAO PF01266.24 gi|385803155|ref|YP_005839555.1| - 6.5e-48 164.1 1.4 1.2e-47 163.3 0.5 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase GCV_T_C PF08669.11 gi|385803155|ref|YP_005839555.1| - 1.4e-15 56.9 0.0 3.8e-15 55.6 0.0 1.8 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain FAO_M PF16350.5 gi|385803155|ref|YP_005839555.1| - 6.5e-13 48.8 0.5 1.9e-12 47.3 0.5 1.8 1 0 0 1 1 1 1 FAD dependent oxidoreductase central domain SoxG PF04268.12 gi|385803155|ref|YP_005839555.1| - 9.8e-07 29.0 0.0 3.7e-06 27.1 0.0 1.9 1 1 1 2 2 2 1 Sarcosine oxidase, gamma subunit family NAD_binding_8 PF13450.6 gi|385803155|ref|YP_005839555.1| - 1.6e-05 25.0 0.0 7.4e-05 22.9 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|385803155|ref|YP_005839555.1| - 1.7e-05 25.2 0.2 0.0028 18.2 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|385803155|ref|YP_005839555.1| - 2.4e-05 23.6 0.6 4.3e-05 22.8 0.1 1.6 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|385803155|ref|YP_005839555.1| - 8e-05 22.0 0.9 0.0089 15.3 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|385803155|ref|YP_005839555.1| - 0.0023 17.2 1.5 0.093 12.0 0.2 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|385803155|ref|YP_005839555.1| - 0.011 15.4 0.1 0.024 14.3 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ThiF PF00899.21 gi|385803155|ref|YP_005839555.1| - 0.017 14.5 0.1 0.032 13.6 0.1 1.4 1 0 0 1 1 1 0 ThiF family TrkA_N PF02254.18 gi|385803155|ref|YP_005839555.1| - 0.03 14.6 0.1 0.082 13.2 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain HI0933_like PF03486.14 gi|385803155|ref|YP_005839555.1| - 0.04 12.6 0.6 0.2 10.4 0.0 1.9 2 0 0 2 2 2 0 HI0933-like protein GMC_oxred_N PF00732.19 gi|385803155|ref|YP_005839555.1| - 0.1 11.9 0.0 0.21 10.9 0.0 1.5 1 0 0 1 1 1 0 GMC oxidoreductase NAD_binding_9 PF13454.6 gi|385803155|ref|YP_005839555.1| - 0.19 11.7 0.5 23 5.0 0.0 2.7 2 0 0 2 2 2 0 FAD-NAD(P)-binding GCV_T PF01571.21 gi|385803156|ref|YP_005839556.1| - 1.5e-76 257.2 0.1 2.9e-76 256.3 0.1 1.5 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain DAO PF01266.24 gi|385803156|ref|YP_005839556.1| - 4.9e-42 144.8 1.8 9.8e-42 143.8 1.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase GCV_T_C PF08669.11 gi|385803156|ref|YP_005839556.1| - 3.6e-15 55.6 0.0 1.2e-14 53.9 0.0 1.9 2 0 0 2 2 2 1 Glycine cleavage T-protein C-terminal barrel domain FAO_M PF16350.5 gi|385803156|ref|YP_005839556.1| - 2.2e-13 50.3 0.1 5.6e-13 49.0 0.1 1.7 1 0 0 1 1 1 1 FAD dependent oxidoreductase central domain FAD_binding_2 PF00890.24 gi|385803156|ref|YP_005839556.1| - 7.2e-07 28.6 0.4 6.9e-06 25.4 0.4 2.2 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|385803156|ref|YP_005839556.1| - 2.8e-06 26.8 0.1 0.00024 20.4 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|385803156|ref|YP_005839556.1| - 3.9e-06 27.0 0.1 2.1e-05 24.6 0.0 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain SoxG PF04268.12 gi|385803156|ref|YP_005839556.1| - 2.1e-05 24.7 0.0 0.00041 20.5 0.0 2.3 2 0 0 2 2 2 1 Sarcosine oxidase, gamma subunit family Pyr_redox_3 PF13738.6 gi|385803156|ref|YP_005839556.1| - 2.3e-05 23.8 0.3 0.0088 15.3 0.1 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|385803156|ref|YP_005839556.1| - 3.6e-05 24.2 0.4 0.0004 20.9 0.2 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.21 gi|385803156|ref|YP_005839556.1| - 7.7e-05 22.2 0.0 0.00017 21.0 0.0 1.5 1 0 0 1 1 1 1 ThiF family ApbA PF02558.16 gi|385803156|ref|YP_005839556.1| - 0.00015 21.4 0.0 0.00031 20.4 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_9 PF13454.6 gi|385803156|ref|YP_005839556.1| - 0.002 18.1 1.4 1.4 8.9 0.3 2.7 2 0 0 2 2 2 2 FAD-NAD(P)-binding HI0933_like PF03486.14 gi|385803156|ref|YP_005839556.1| - 0.0031 16.3 0.1 0.97 8.1 0.0 2.3 2 0 0 2 2 2 2 HI0933-like protein Shikimate_DH PF01488.20 gi|385803156|ref|YP_005839556.1| - 0.0069 16.5 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GMC_oxred_N PF00732.19 gi|385803156|ref|YP_005839556.1| - 0.014 14.8 0.0 0.028 13.8 0.0 1.4 1 0 0 1 1 1 0 GMC oxidoreductase TrkA_N PF02254.18 gi|385803156|ref|YP_005839556.1| - 0.026 14.8 0.1 0.055 13.7 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain Lycopene_cycl PF05834.12 gi|385803156|ref|YP_005839556.1| - 0.044 12.8 0.1 0.19 10.7 0.3 1.8 2 0 0 2 2 2 0 Lycopene cyclase protein Amino_oxidase PF01593.24 gi|385803156|ref|YP_005839556.1| - 0.058 12.7 0.0 0.12 11.6 0.0 1.5 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase NAD_binding_7 PF13241.6 gi|385803156|ref|YP_005839556.1| - 0.099 13.1 0.0 0.21 12.0 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding PALP PF00291.25 gi|385803157|ref|YP_005839557.1| - 2.6e-80 270.0 6.7 3.5e-80 269.6 6.7 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.6 gi|385803157|ref|YP_005839557.1| - 9.9e-08 32.5 0.3 1.8e-06 28.4 0.2 2.6 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|385803157|ref|YP_005839557.1| - 3.5e-07 29.9 1.5 5.6e-07 29.2 0.5 1.9 2 0 0 2 2 2 1 ACT domain Usp PF00582.26 gi|385803158|ref|YP_005839558.1| - 2e-26 93.2 0.6 2.2e-26 93.0 0.6 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF2721 PF11026.8 gi|385803159|ref|YP_005839559.1| - 0.81 9.6 7.5 2.4 8.1 7.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2721) BCCT PF02028.17 gi|385803160|ref|YP_005839560.1| - 3.6e-181 602.9 48.8 4.1e-181 602.7 48.8 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter Tnp_DNA_bind PF14706.6 gi|385803161|ref|YP_005839561.1| - 3.9e-25 87.5 0.0 6.9e-25 86.7 0.0 1.4 1 0 0 1 1 1 1 Transposase DNA-binding DDE_Tnp_1 PF01609.21 gi|385803161|ref|YP_005839561.1| - 9.3e-09 35.2 0.0 2.6e-08 33.8 0.0 1.7 1 1 1 2 2 2 1 Transposase DDE domain Dimer_Tnp_Tn5 PF02281.16 gi|385803161|ref|YP_005839561.1| - 1.1e-07 31.5 0.1 2.8e-07 30.2 0.1 1.8 1 1 0 1 1 1 1 Transposase Tn5 dimerisation domain DUF2721 PF11026.8 gi|385803162|ref|YP_005839562.1| - 0.98 9.3 5.4 0.14 12.1 1.4 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) Pterin_bind PF00809.22 gi|385803163|ref|YP_005839563.1| - 8.7e-84 281.0 1.5 1.6e-83 280.1 0.4 2.0 2 0 0 2 2 2 1 Pterin binding enzyme Mur_ligase_M PF08245.12 gi|385803163|ref|YP_005839563.1| - 3.5e-13 50.0 0.5 7.1e-13 49.0 0.1 1.8 2 0 0 2 2 2 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|385803163|ref|YP_005839563.1| - 1.6e-06 28.3 0.0 1.2e-05 25.5 0.0 2.5 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain FTHFS PF01268.19 gi|385803164|ref|YP_005839564.1| - 5.5e-239 794.0 0.0 6.2e-239 793.8 0.0 1.0 1 0 0 1 1 1 1 Formate--tetrahydrofolate ligase Ribonuc_L-PSP PF01042.21 gi|385803165|ref|YP_005839565.1| - 8.4e-37 125.9 0.1 9.4e-37 125.7 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.6 gi|385803165|ref|YP_005839565.1| - 0.0051 17.0 0.0 0.0069 16.5 0.0 1.3 1 0 0 1 1 1 1 YjgF/chorismate_mutase-like, putative endoribonuclease Gas_vesicle PF00741.18 gi|385803166|ref|YP_005839566.1| - 4.5e-13 49.1 5.4 5.2e-13 48.9 5.4 1.1 1 0 0 1 1 1 1 Gas vesicle protein O_anti_polymase PF01901.16 gi|385803166|ref|YP_005839566.1| - 0.086 12.1 0.0 0.086 12.1 0.0 1.0 1 0 0 1 1 1 0 Putative O-antigen polymerase GvpL_GvpF PF06386.11 gi|385803167|ref|YP_005839567.1| - 1.4e-70 238.0 0.0 1.8e-70 237.6 0.0 1.1 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpL/GvpF GvpK PF05121.12 gi|385803168|ref|YP_005839568.1| - 4.6e-25 87.5 6.0 6.5e-25 87.0 6.0 1.2 1 0 0 1 1 1 1 Gas vesicle protein K DUF2730 PF10805.8 gi|385803168|ref|YP_005839568.1| - 0.01 15.9 0.1 0.016 15.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) Csm1_N PF18504.1 gi|385803168|ref|YP_005839568.1| - 0.011 16.1 3.0 0.02 15.2 3.0 1.5 1 0 0 1 1 1 0 Csm1 N-terminal domain End3 PF12761.7 gi|385803168|ref|YP_005839568.1| - 0.012 15.8 1.5 0.015 15.5 1.5 1.1 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 Rx_N PF18052.1 gi|385803168|ref|YP_005839568.1| - 0.017 15.4 2.6 0.026 14.8 2.6 1.3 1 0 0 1 1 1 0 Rx N-terminal domain CorA PF01544.18 gi|385803168|ref|YP_005839568.1| - 0.029 13.7 1.1 0.043 13.1 1.1 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein FlxA PF14282.6 gi|385803168|ref|YP_005839568.1| - 0.04 13.9 1.3 0.07 13.1 1.3 1.4 1 1 0 1 1 1 0 FlxA-like protein Glu-tRNAGln PF02686.15 gi|385803168|ref|YP_005839568.1| - 0.055 13.8 2.0 0.088 13.1 1.8 1.5 1 1 0 1 1 1 0 Glu-tRNAGln amidotransferase C subunit DUF368 PF04018.13 gi|385803168|ref|YP_005839568.1| - 0.099 12.2 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF368) Gas_vesicle PF00741.18 gi|385803169|ref|YP_005839569.1| - 1.2e-14 54.1 3.5 1.6e-14 53.7 3.5 1.2 1 0 0 1 1 1 1 Gas vesicle protein DUF883 PF05957.13 gi|385803170|ref|YP_005839570.1| - 0.016 15.8 8.0 0.016 15.8 8.0 1.6 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF4407 PF14362.6 gi|385803170|ref|YP_005839570.1| - 0.44 9.9 5.4 0.43 9.9 5.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF2229 PF09989.9 gi|385803170|ref|YP_005839570.1| - 0.63 9.6 3.3 0.66 9.6 3.3 1.2 1 0 0 1 1 1 0 CoA enzyme activase uncharacterised domain (DUF2229) Rrn6 PF10214.9 gi|385803170|ref|YP_005839570.1| - 1.8 7.0 12.3 2 6.8 12.3 1.0 1 0 0 1 1 1 0 RNA polymerase I-specific transcription-initiation factor O-antigen_lig PF13425.6 gi|385803170|ref|YP_005839570.1| - 2.3 6.9 5.8 2.6 6.7 5.8 1.0 1 0 0 1 1 1 0 O-antigen ligase like membrane protein Presenilin PF01080.17 gi|385803170|ref|YP_005839570.1| - 7.7 5.2 10.1 7.8 5.2 10.1 1.1 1 0 0 1 1 1 0 Presenilin GvpH PF05455.11 gi|385803171|ref|YP_005839571.1| - 4.2e-14 53.0 4.7 5.3e-14 52.7 3.3 1.7 1 1 1 2 2 2 1 GvpH ArsA_HSP20 PF17886.1 gi|385803171|ref|YP_005839571.1| - 0.011 15.3 0.1 0.029 13.9 0.1 1.8 1 1 0 1 1 1 0 HSP20-like domain found in ArsA MIP-T3 PF10243.9 gi|385803172|ref|YP_005839572.1| - 0.057 13.4 0.2 0.079 13.0 0.2 1.3 1 1 0 1 1 1 0 Microtubule-binding protein MIP-T3 CH-like domain GvpL_GvpF PF06386.11 gi|385803173|ref|YP_005839573.1| - 2.2e-39 135.8 0.0 1.3e-21 77.7 0.1 2.0 1 1 1 2 2 2 2 Gas vesicle synthesis protein GvpL/GvpF AAA_31 PF13614.6 gi|385803174|ref|YP_005839574.1| - 1e-40 139.5 0.0 1.7e-40 138.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|385803174|ref|YP_005839574.1| - 3.2e-17 62.8 0.0 4.7e-17 62.2 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|385803174|ref|YP_005839574.1| - 1.9e-10 40.6 1.4 6.2e-09 35.7 0.8 2.4 2 1 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|385803174|ref|YP_005839574.1| - 5.3e-10 39.0 0.1 8.2e-09 35.1 0.0 2.3 2 0 0 2 2 2 1 ATPase MipZ Fer4_NifH PF00142.18 gi|385803174|ref|YP_005839574.1| - 7.4e-08 32.2 0.0 0.00014 21.4 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|385803174|ref|YP_005839574.1| - 9.9e-05 21.7 0.3 0.00025 20.3 0.3 1.7 1 1 0 1 1 1 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|385803174|ref|YP_005839574.1| - 0.00069 19.2 0.3 0.01 15.3 0.3 2.2 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ VirC1 PF07015.11 gi|385803174|ref|YP_005839574.1| - 0.0019 17.5 0.3 0.014 14.7 0.0 2.2 2 0 0 2 2 2 1 VirC1 protein AAA_25 PF13481.6 gi|385803174|ref|YP_005839574.1| - 0.053 13.1 0.0 0.13 11.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain CLP1_P PF16575.5 gi|385803174|ref|YP_005839574.1| - 0.14 12.0 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop GvpO PF05800.11 gi|385803177|ref|YP_005839577.1| - 1.3e-30 105.1 1.1 2.1e-30 104.5 1.1 1.3 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpO AAA_5 PF07728.14 gi|385803178|ref|YP_005839578.1| - 7.5e-18 64.9 0.0 9.7e-17 61.3 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|385803178|ref|YP_005839578.1| - 7.8e-06 26.3 0.0 2.1e-05 25.0 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|385803178|ref|YP_005839578.1| - 6.3e-05 23.4 0.0 0.00011 22.6 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain Sigma54_activat PF00158.26 gi|385803178|ref|YP_005839578.1| - 0.00054 19.7 0.0 0.0073 16.0 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_3 PF07726.11 gi|385803178|ref|YP_005839578.1| - 0.00067 19.5 0.0 0.033 14.0 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|385803178|ref|YP_005839578.1| - 0.00076 19.5 0.0 0.0025 17.8 0.0 1.9 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|385803178|ref|YP_005839578.1| - 0.00099 19.3 0.0 0.0029 17.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|385803178|ref|YP_005839578.1| - 0.0012 18.4 0.0 0.0024 17.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_25 PF13481.6 gi|385803178|ref|YP_005839578.1| - 0.0026 17.4 0.0 0.0086 15.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.6 gi|385803178|ref|YP_005839578.1| - 0.0026 17.9 0.0 0.0067 16.5 0.0 1.8 2 1 0 2 2 2 1 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|385803178|ref|YP_005839578.1| - 0.0029 17.4 0.0 0.0068 16.2 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein IPT PF01745.16 gi|385803178|ref|YP_005839578.1| - 0.0059 16.0 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 Isopentenyl transferase DNA_pol3_beta PF00712.19 gi|385803178|ref|YP_005839578.1| - 0.0089 16.2 0.3 0.051 13.7 0.0 2.2 2 1 0 2 2 2 1 DNA polymerase III beta subunit, N-terminal domain ABC_tran PF00005.27 gi|385803178|ref|YP_005839578.1| - 0.011 16.2 0.0 0.036 14.6 0.0 2.0 2 0 0 2 2 2 0 ABC transporter ATPase PF06745.13 gi|385803178|ref|YP_005839578.1| - 0.016 14.6 0.1 2.1 7.6 0.0 2.4 2 0 0 2 2 2 0 KaiC NACHT PF05729.12 gi|385803178|ref|YP_005839578.1| - 0.023 14.6 0.0 0.062 13.2 0.0 1.7 2 0 0 2 2 1 0 NACHT domain TsaE PF02367.17 gi|385803178|ref|YP_005839578.1| - 0.031 14.3 0.0 0.18 11.8 0.0 2.0 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 gi|385803178|ref|YP_005839578.1| - 0.033 14.4 0.0 0.093 13.0 0.0 1.7 2 0 0 2 2 1 0 AAA domain PhoH PF02562.16 gi|385803178|ref|YP_005839578.1| - 0.036 13.5 0.0 0.074 12.5 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_14 PF13173.6 gi|385803178|ref|YP_005839578.1| - 0.038 14.0 0.0 0.087 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|385803178|ref|YP_005839578.1| - 0.042 14.3 0.2 0.21 12.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|385803178|ref|YP_005839578.1| - 0.044 14.3 2.1 0.046 14.3 0.0 2.1 2 0 0 2 2 1 0 AAA domain RuvB_N PF05496.12 gi|385803178|ref|YP_005839578.1| - 0.044 13.5 0.0 0.22 11.3 0.0 2.0 1 1 1 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|385803178|ref|YP_005839578.1| - 0.054 13.7 0.0 0.21 11.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain ResIII PF04851.15 gi|385803178|ref|YP_005839578.1| - 0.063 13.3 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit RNA_helicase PF00910.22 gi|385803178|ref|YP_005839578.1| - 0.17 12.2 0.0 0.39 11.1 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Halo_GVPC PF05465.13 gi|385803179|ref|YP_005839579.1| - 3.4e-47 158.1 98.5 4.6e-12 45.9 5.4 8.3 8 0 0 8 8 8 6 Halobacterial gas vesicle protein C (GVPC) repeat HsbA PF12296.8 gi|385803179|ref|YP_005839579.1| - 6e-06 26.7 5.6 0.00077 19.9 0.4 3.1 2 1 1 3 3 3 2 Hydrophobic surface binding protein A ROS_MUCR PF05443.11 gi|385803179|ref|YP_005839579.1| - 2.9e-05 24.1 2.8 0.00022 21.3 2.6 2.6 1 1 0 1 1 1 1 ROS/MUCR transcriptional regulator protein TACC_C PF05010.14 gi|385803179|ref|YP_005839579.1| - 0.0012 18.7 5.4 0.039 13.7 0.1 3.2 1 1 2 3 3 3 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal FAM184 PF15665.5 gi|385803179|ref|YP_005839579.1| - 0.0022 17.8 17.2 0.0084 15.9 3.5 2.7 1 1 0 2 2 2 2 Family with sequence similarity 184, A and B DUF1664 PF07889.12 gi|385803179|ref|YP_005839579.1| - 0.0023 17.9 2.7 2.2 8.3 0.0 3.9 1 1 3 4 4 4 1 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 gi|385803179|ref|YP_005839579.1| - 0.016 15.2 0.7 0.82 9.7 1.0 2.8 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus LOH1CR12 PF10158.9 gi|385803179|ref|YP_005839579.1| - 0.022 14.8 2.2 3 7.9 0.1 3.7 1 1 4 5 5 5 0 Tumour suppressor protein T2SSF PF00482.23 gi|385803179|ref|YP_005839579.1| - 0.046 13.7 0.5 5.9 6.9 0.1 2.4 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein F Lectin_N PF03954.14 gi|385803179|ref|YP_005839579.1| - 0.049 13.4 1.3 1.9 8.2 0.0 3.0 2 1 1 3 3 3 0 Hepatic lectin, N-terminal domain CCP_MauG PF03150.14 gi|385803179|ref|YP_005839579.1| - 0.065 13.9 0.6 0.065 13.9 0.6 3.5 2 2 2 4 4 4 0 Di-haem cytochrome c peroxidase Mei5_like PF17021.5 gi|385803179|ref|YP_005839579.1| - 0.074 13.1 0.0 2.9 8.0 0.0 2.6 1 1 1 2 2 2 0 Putative double-strand recombination repair-like NPV_P10 PF05531.12 gi|385803179|ref|YP_005839579.1| - 0.097 13.1 6.8 18 5.9 1.3 4.0 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Tup_N PF08581.10 gi|385803179|ref|YP_005839579.1| - 0.11 12.8 6.9 2.3 8.6 0.1 4.2 2 2 2 4 4 4 0 Tup N-terminal HypA PF01155.19 gi|385803179|ref|YP_005839579.1| - 0.12 12.4 0.3 0.34 10.9 0.3 2.0 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Bacillus_HBL PF05791.11 gi|385803179|ref|YP_005839579.1| - 0.17 11.7 7.7 1.5 8.6 2.6 3.3 1 1 2 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) MutS_III PF05192.18 gi|385803179|ref|YP_005839579.1| - 0.28 11.4 3.5 0.66 10.2 3.5 1.6 1 0 0 1 1 1 0 MutS domain III Elf1 PF05129.13 gi|385803179|ref|YP_005839579.1| - 0.28 11.2 2.0 5.1 7.2 0.0 3.4 3 0 0 3 3 3 0 Transcription elongation factor Elf1 like DUF16 PF01519.16 gi|385803179|ref|YP_005839579.1| - 0.54 10.8 7.8 6.1 7.4 1.6 3.7 1 1 1 2 2 2 0 Protein of unknown function DUF16 Filament PF00038.21 gi|385803179|ref|YP_005839579.1| - 0.65 9.5 12.4 1.9 8.0 0.7 2.6 1 1 2 3 3 3 0 Intermediate filament protein Tmemb_cc2 PF10267.9 gi|385803179|ref|YP_005839579.1| - 1 8.5 10.2 19 4.2 0.1 2.9 1 1 2 3 3 3 0 Predicted transmembrane and coiled-coil 2 protein Golgin_A5 PF09787.9 gi|385803179|ref|YP_005839579.1| - 2.1 7.7 9.1 4.8 6.6 3.6 3.0 1 1 2 3 3 3 0 Golgin subfamily A member 5 Rab5-bind PF09311.11 gi|385803179|ref|YP_005839579.1| - 6 6.2 10.1 0.69 9.3 0.3 2.6 2 1 1 3 3 3 0 Rabaptin-like protein Gas_vesicle PF00741.18 gi|385803180|ref|YP_005839580.1| - 3.6e-15 55.8 5.3 4.7e-15 55.4 5.3 1.2 1 0 0 1 1 1 1 Gas vesicle protein GATase PF00117.28 gi|385803181|ref|YP_005839581.1| - 5.1e-46 156.8 0.0 5.7e-46 156.7 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|385803181|ref|YP_005839581.1| - 3e-07 30.4 0.7 1.3e-06 28.3 0.7 1.8 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.18 gi|385803182|ref|YP_005839582.1| - 5.7e-99 330.9 0.0 7.9e-99 330.4 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|385803182|ref|YP_005839582.1| - 1.4e-08 35.0 0.0 6e-08 33.0 0.0 2.0 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region Hexapep PF00132.24 gi|385803183|ref|YP_005839583.1| - 7.8e-12 44.4 5.1 1e-07 31.3 1.9 2.6 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) SATase_N PF06426.14 gi|385803183|ref|YP_005839583.1| - 2.8e-05 24.4 0.0 4.7e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal Hexapep_2 PF14602.6 gi|385803183|ref|YP_005839583.1| - 0.0033 17.1 0.6 0.0033 17.1 0.6 2.6 2 1 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase ABC_membrane PF00664.23 gi|385803184|ref|YP_005839584.1| - 6e-39 134.3 4.3 8.5e-39 133.8 4.3 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|385803184|ref|YP_005839584.1| - 1.6e-34 119.3 0.0 3.1e-34 118.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|385803184|ref|YP_005839584.1| - 5.7e-05 22.6 0.0 0.00019 21.0 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.12 gi|385803184|ref|YP_005839584.1| - 0.00013 21.3 0.0 0.00031 20.1 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin SLATT_1 PF18181.1 gi|385803184|ref|YP_005839584.1| - 0.02 14.8 1.4 3 7.8 0.2 2.6 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 1 KAP_NTPase PF07693.14 gi|385803184|ref|YP_005839584.1| - 0.028 13.7 0.0 0.081 12.1 0.0 1.7 2 0 0 2 2 2 0 KAP family P-loop domain AAA_18 PF13238.6 gi|385803184|ref|YP_005839584.1| - 0.033 14.7 0.0 0.076 13.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|385803184|ref|YP_005839584.1| - 0.041 13.8 0.0 0.093 12.6 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase RsgA_GTPase PF03193.16 gi|385803184|ref|YP_005839584.1| - 0.045 13.7 0.1 0.15 12.0 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase AAA_22 PF13401.6 gi|385803184|ref|YP_005839584.1| - 0.056 13.7 0.3 0.84 9.9 0.3 2.6 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|385803184|ref|YP_005839584.1| - 0.059 13.8 5.3 0.7 10.2 4.1 2.8 2 1 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|385803184|ref|YP_005839584.1| - 0.076 13.4 0.2 1.5 9.2 0.2 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|385803184|ref|YP_005839584.1| - 0.088 12.6 0.2 0.24 11.2 0.2 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|385803184|ref|YP_005839584.1| - 0.11 12.2 0.0 0.25 11.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain PAS_9 PF13426.7 gi|385803185|ref|YP_005839585.1| - 2.8e-10 40.4 0.0 8e-10 38.9 0.0 1.7 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|385803185|ref|YP_005839585.1| - 0.00086 19.3 0.0 0.0021 18.1 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|385803185|ref|YP_005839585.1| - 0.0019 18.4 0.0 0.0028 17.9 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|385803185|ref|YP_005839585.1| - 0.0068 16.4 0.0 0.015 15.3 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 gi|385803185|ref|YP_005839585.1| - 0.012 15.9 0.0 0.05 13.9 0.0 1.9 2 0 0 2 2 2 0 PAS fold Methyltransf_11 PF08241.12 gi|385803186|ref|YP_005839586.1| - 1.5e-09 38.4 0.0 2.4e-09 37.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|385803186|ref|YP_005839586.1| - 0.00014 22.5 0.1 0.00046 20.8 0.0 1.9 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|385803186|ref|YP_005839586.1| - 0.0017 19.1 0.0 0.0028 18.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|385803186|ref|YP_005839586.1| - 0.019 14.8 0.0 0.024 14.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|385803186|ref|YP_005839586.1| - 0.024 14.4 0.0 0.032 14.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain MetW PF07021.12 gi|385803186|ref|YP_005839586.1| - 0.028 14.0 0.0 0.038 13.6 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW N6_N4_Mtase PF01555.18 gi|385803186|ref|YP_005839586.1| - 0.11 12.2 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 DNA methylase DUF5526 PF17664.1 gi|385803187|ref|YP_005839587.1| - 0.092 12.3 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5526) RE_LlaMI PF09562.10 gi|385803187|ref|YP_005839587.1| - 0.13 11.8 0.0 0.17 11.4 0.0 1.1 1 0 0 1 1 1 0 LlaMI restriction endonuclease Methyltransf_11 PF08241.12 gi|385803190|ref|YP_005839590.1| - 3.3e-16 59.7 0.0 5.9e-16 58.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|385803190|ref|YP_005839590.1| - 1.9e-15 57.3 0.0 4.5e-15 56.1 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|385803190|ref|YP_005839590.1| - 2.8e-10 40.2 0.0 6e-10 39.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|385803190|ref|YP_005839590.1| - 7.9e-09 35.6 0.0 1.2e-08 35.0 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|385803190|ref|YP_005839590.1| - 1.5e-07 31.0 0.0 5.4e-07 29.2 0.0 1.8 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|385803190|ref|YP_005839590.1| - 1.4e-06 28.9 0.0 4.6e-06 27.3 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain CMAS PF02353.20 gi|385803190|ref|YP_005839590.1| - 4.7e-05 22.8 0.0 6.7e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.15 gi|385803190|ref|YP_005839590.1| - 0.0011 18.8 0.0 0.0021 18.0 0.0 1.4 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_9 PF08003.11 gi|385803190|ref|YP_005839590.1| - 0.0046 15.9 0.0 0.0067 15.4 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) Pox_MCEL PF03291.16 gi|385803190|ref|YP_005839590.1| - 0.025 13.7 0.1 0.46 9.5 0.0 2.0 2 0 0 2 2 2 0 mRNA capping enzyme MetW PF07021.12 gi|385803190|ref|YP_005839590.1| - 0.052 13.1 0.1 0.079 12.5 0.1 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW MTS PF05175.14 gi|385803190|ref|YP_005839590.1| - 0.13 11.8 0.1 0.24 11.0 0.1 1.5 1 1 0 1 1 1 0 Methyltransferase small domain DJ-1_PfpI PF01965.24 gi|385803191|ref|YP_005839591.1| - 2.9e-15 56.5 0.4 3.2e-13 49.8 0.4 2.5 1 1 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 gi|385803191|ref|YP_005839591.1| - 4.5e-08 33.0 0.0 1.6e-07 31.2 0.0 1.8 1 1 0 1 1 1 1 ThiJ/PfpI family-like Nitro_FeMo-Co PF02579.17 gi|385803191|ref|YP_005839591.1| - 0.06 13.7 0.0 0.67 10.3 0.0 2.5 3 0 0 3 3 3 0 Dinitrogenase iron-molybdenum cofactor ThuA PF06283.11 gi|385803191|ref|YP_005839591.1| - 0.14 12.4 0.0 0.16 12.1 0.0 1.2 1 0 0 1 1 1 0 Trehalose utilisation GATase_3 PF07685.14 gi|385803191|ref|YP_005839591.1| - 0.16 11.5 0.0 0.25 10.9 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Amino_oxidase PF01593.24 gi|385803192|ref|YP_005839592.1| - 3.7e-35 122.1 0.0 5.4e-35 121.6 0.0 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|385803192|ref|YP_005839592.1| - 4.4e-16 58.9 0.1 1.4e-15 57.3 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|385803192|ref|YP_005839592.1| - 6.1e-15 55.7 3.1 3.2e-14 53.3 3.1 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|385803192|ref|YP_005839592.1| - 6.8e-08 33.0 1.2 1.1e-06 29.0 0.2 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|385803192|ref|YP_005839592.1| - 3.9e-07 29.6 0.4 5.8e-06 25.8 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|385803192|ref|YP_005839592.1| - 4.4e-06 26.2 0.1 0.0025 17.1 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|385803192|ref|YP_005839592.1| - 1.3e-05 24.6 0.2 2.4e-05 23.7 0.2 1.4 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|385803192|ref|YP_005839592.1| - 2.3e-05 23.3 0.2 0.0051 15.6 0.2 2.1 2 0 0 2 2 2 2 HI0933-like protein Thi4 PF01946.17 gi|385803192|ref|YP_005839592.1| - 2.4e-05 23.7 0.1 4.4e-05 22.8 0.1 1.3 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.24 gi|385803192|ref|YP_005839592.1| - 0.00028 20.1 0.4 0.00072 18.7 0.4 1.7 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|385803192|ref|YP_005839592.1| - 0.00035 20.0 0.0 0.00049 19.6 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|385803192|ref|YP_005839592.1| - 0.013 14.6 0.6 0.024 13.7 0.6 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A MCRA PF06100.11 gi|385803192|ref|YP_005839592.1| - 0.014 14.3 0.1 0.028 13.2 0.0 1.5 2 0 0 2 2 2 0 MCRA family NAD_binding_9 PF13454.6 gi|385803192|ref|YP_005839592.1| - 0.18 11.8 3.5 0.31 11.0 0.4 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding TK PF00265.18 gi|385803193|ref|YP_005839593.1| - 7e-48 162.8 0.0 1e-30 106.9 0.0 2.0 1 1 1 2 2 2 2 Thymidine kinase Helicase_RecD PF05127.14 gi|385803193|ref|YP_005839593.1| - 0.099 12.5 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Helicase Zn-ribbon_8 PF09723.10 gi|385803193|ref|YP_005839593.1| - 0.14 12.3 1.4 5.2 7.3 0.0 2.6 2 0 0 2 2 2 0 Zinc ribbon domain Yip1 PF04893.17 gi|385803194|ref|YP_005839594.1| - 9.6e-16 58.0 17.0 1.2e-15 57.7 17.0 1.1 1 0 0 1 1 1 1 Yip1 domain Abhydrolase_9_N PF15420.6 gi|385803194|ref|YP_005839594.1| - 0.76 9.7 10.4 1.4 8.9 10.4 1.5 1 1 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus tRNA_anti-codon PF01336.25 gi|385803195|ref|YP_005839595.1| - 2.3e-10 40.3 0.1 4.6e-10 39.3 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|385803195|ref|YP_005839595.1| - 1.4e-06 28.5 0.0 5.6e-06 26.6 0.0 2.1 1 0 0 1 1 1 1 S1 RNA binding domain tRNA_anti_2 PF13742.6 gi|385803195|ref|YP_005839595.1| - 0.00052 20.2 0.0 0.0011 19.1 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain MAP65_ASE1 PF03999.12 gi|385803195|ref|YP_005839595.1| - 6.5 5.3 7.7 11 4.6 7.7 1.2 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) Radical_SAM PF04055.21 gi|385803196|ref|YP_005839596.1| - 7e-26 91.6 0.0 1.2e-25 90.8 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM_C PF16199.5 gi|385803196|ref|YP_005839596.1| - 2.9e-23 81.7 0.0 6.4e-23 80.6 0.0 1.6 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Acetyltransf_1 PF00583.25 gi|385803196|ref|YP_005839596.1| - 6.7e-08 32.8 0.1 1.5e-07 31.6 0.1 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|385803196|ref|YP_005839596.1| - 0.00022 21.1 0.1 0.00057 19.8 0.1 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|385803197|ref|YP_005839597.1| - 2.1e-17 63.2 0.0 8.3e-16 58.1 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|385803197|ref|YP_005839597.1| - 2.7e-08 34.0 0.0 1.1e-07 32.1 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|385803197|ref|YP_005839597.1| - 4.3e-07 30.3 0.0 5.2e-06 26.8 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|385803197|ref|YP_005839597.1| - 3e-06 27.3 0.0 0.0015 18.6 0.0 2.1 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|385803197|ref|YP_005839597.1| - 0.021 14.8 0.0 0.036 14.0 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_CG PF14542.6 gi|385803197|ref|YP_005839597.1| - 0.086 13.0 0.1 0.15 12.2 0.1 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase TFIIA PF03153.13 gi|385803198|ref|YP_005839598.1| - 0.86 9.5 18.6 1 9.3 18.6 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit FbpA PF05833.11 gi|385803199|ref|YP_005839599.1| - 6.4e-100 335.0 0.4 8.4e-100 334.7 0.4 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|385803199|ref|YP_005839599.1| - 6.5e-22 78.2 0.0 1.3e-21 77.3 0.0 1.5 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|385803199|ref|YP_005839599.1| - 0.0018 18.4 0.0 0.006 16.8 0.0 1.9 1 0 0 1 1 1 1 NFACT protein RNA binding domain eRF1_1 PF03463.15 gi|385803200|ref|YP_005839600.1| - 1.3e-25 89.9 0.0 2.1e-25 89.2 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|385803200|ref|YP_005839600.1| - 8.2e-24 84.3 1.0 5.1e-23 81.7 0.0 2.6 3 0 0 3 3 3 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|385803200|ref|YP_005839600.1| - 2.8e-07 30.9 0.1 3.3e-06 27.5 0.1 2.3 1 1 0 1 1 1 1 eRF1 domain 2 Y1_Tnp PF01797.16 gi|385803200|ref|YP_005839600.1| - 0.15 12.1 0.0 0.35 11.0 0.0 1.5 1 0 0 1 1 1 0 Transposase IS200 like Glyco_hydro_3_C PF01915.22 gi|385803200|ref|YP_005839600.1| - 4.7 7.1 6.2 1.4 8.9 1.0 2.1 1 1 0 2 2 2 0 Glycosyl hydrolase family 3 C-terminal domain OCD_Mu_crystall PF02423.15 gi|385803201|ref|YP_005839601.1| - 1.6e-08 33.8 0.0 1.7e-08 33.8 0.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family DDE_5 PF13546.6 gi|385803202|ref|YP_005839602.1| - 2e-26 93.0 0.0 2.8e-26 92.5 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|385803202|ref|YP_005839602.1| - 9.1e-16 58.1 0.1 2.4e-15 56.8 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|385803202|ref|YP_005839602.1| - 0.00023 20.5 0.4 0.001 18.4 0.4 1.8 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|385803202|ref|YP_005839602.1| - 0.015 13.5 0.0 0.022 13.1 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 DDE_Tnp_1_6 PF13751.6 gi|385803202|ref|YP_005839602.1| - 0.14 12.4 0.0 0.31 11.3 0.0 1.6 1 0 0 1 1 1 0 Transposase DDE domain Creatininase PF02633.14 gi|385803204|ref|YP_005839604.1| - 4e-68 229.5 0.0 4.6e-68 229.3 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Thioredoxin_4 PF13462.6 gi|385803205|ref|YP_005839605.1| - 1.7e-32 112.9 0.0 2e-32 112.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 gi|385803205|ref|YP_005839605.1| - 1.9e-05 24.5 1.2 0.0057 16.5 1.2 2.1 1 1 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_2 PF13098.6 gi|385803205|ref|YP_005839605.1| - 0.00074 19.9 0.1 0.0014 19.1 0.1 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|385803205|ref|YP_005839605.1| - 0.089 12.9 0.1 1.5 8.9 0.0 2.2 2 0 0 2 2 2 0 Thioredoxin domain DUF1918 PF08940.11 gi|385803206|ref|YP_005839606.1| - 0.0074 15.9 0.1 0.0091 15.6 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1918) Tudor_3 PF18115.1 gi|385803206|ref|YP_005839606.1| - 0.15 11.9 0.1 0.26 11.2 0.1 1.5 1 1 0 1 1 1 0 DNA repair protein Crb2 Tudor domain RNA_binding PF01877.17 gi|385803207|ref|YP_005839607.1| - 1.3e-30 106.1 0.1 1.6e-30 105.8 0.1 1.1 1 0 0 1 1 1 1 RNA binding AhpC-TSA PF00578.21 gi|385803208|ref|YP_005839608.1| - 6.7e-13 48.6 0.0 9.5e-13 48.2 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|385803208|ref|YP_005839608.1| - 1.2e-08 34.7 0.0 1.7e-08 34.3 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.6 gi|385803208|ref|YP_005839608.1| - 0.039 14.4 0.0 0.064 13.7 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain TraF PF13728.6 gi|385803208|ref|YP_005839608.1| - 0.14 11.9 0.0 0.27 11.0 0.0 1.6 1 1 0 1 1 1 0 F plasmid transfer operon protein HSP20 PF00011.21 gi|385803209|ref|YP_005839609.1| - 7.5e-21 74.2 0.2 9.8e-21 73.8 0.2 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|385803209|ref|YP_005839609.1| - 2.9e-12 46.0 0.0 4.2e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|385803209|ref|YP_005839609.1| - 0.018 16.0 0.0 0.029 15.4 0.0 1.4 1 0 0 1 1 1 0 CS domain GvpH PF05455.11 gi|385803209|ref|YP_005839609.1| - 0.065 13.3 0.3 0.18 11.9 0.3 1.8 1 1 1 2 2 2 0 GvpH AsnC_trans_reg PF01037.21 gi|385803210|ref|YP_005839610.1| - 4.5e-15 55.4 0.2 8.2e-15 54.5 0.2 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|385803210|ref|YP_005839610.1| - 8.9e-06 25.2 0.0 1.8e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|385803210|ref|YP_005839610.1| - 4e-05 23.3 2.0 5.9e-05 22.8 0.6 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|385803210|ref|YP_005839610.1| - 6.1e-05 22.8 0.2 0.00014 21.7 0.2 1.6 1 0 0 1 1 1 1 MarR family DprA_WH PF17782.1 gi|385803210|ref|YP_005839610.1| - 8.4e-05 22.6 0.7 0.00015 21.8 0.7 1.3 1 0 0 1 1 1 1 DprA winged helix domain MarR PF01047.22 gi|385803210|ref|YP_005839610.1| - 0.00067 19.5 0.0 0.0017 18.2 0.0 1.7 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|385803210|ref|YP_005839610.1| - 0.0011 18.8 0.0 0.0021 17.9 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|385803210|ref|YP_005839610.1| - 0.0016 18.2 0.0 0.0058 16.4 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_IclR PF09339.10 gi|385803210|ref|YP_005839610.1| - 0.0026 17.5 0.0 0.0051 16.6 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_29 PF13551.6 gi|385803210|ref|YP_005839610.1| - 0.0043 17.0 0.0 0.01 15.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 gi|385803210|ref|YP_005839610.1| - 0.0056 16.8 0.0 0.012 15.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|385803210|ref|YP_005839610.1| - 0.0061 16.3 0.1 0.17 11.7 0.0 2.5 3 0 0 3 3 2 1 Helix-turn-helix domain FeoC PF09012.10 gi|385803210|ref|YP_005839610.1| - 0.0083 16.2 0.0 0.016 15.3 0.0 1.4 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_11 PF08279.12 gi|385803210|ref|YP_005839610.1| - 0.013 15.5 0.0 0.03 14.3 0.0 1.6 2 0 0 2 2 2 0 HTH domain HTH_20 PF12840.7 gi|385803210|ref|YP_005839610.1| - 0.027 14.5 0.2 0.051 13.6 0.2 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|385803210|ref|YP_005839610.1| - 0.028 14.4 0.0 0.062 13.3 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|385803210|ref|YP_005839610.1| - 0.032 14.4 0.0 0.069 13.4 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain RPA_C PF08784.11 gi|385803210|ref|YP_005839610.1| - 0.052 14.2 0.0 0.13 12.9 0.0 1.6 2 0 0 2 2 1 0 Replication protein A C terminal HTH_Tnp_ISL3 PF13542.6 gi|385803210|ref|YP_005839610.1| - 0.11 11.9 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 FtsK_gamma PF09397.10 gi|385803210|ref|YP_005839610.1| - 0.12 12.2 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 Ftsk gamma domain SelB-wing_2 PF09106.11 gi|385803210|ref|YP_005839610.1| - 0.14 12.4 0.1 0.26 11.5 0.1 1.5 1 0 0 1 1 1 0 Elongation factor SelB, winged helix HTH_13 PF11972.8 gi|385803210|ref|YP_005839610.1| - 0.18 11.9 0.0 0.34 11.0 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain Aminotran_1_2 PF00155.21 gi|385803211|ref|YP_005839611.1| - 2.7e-70 237.4 0.0 3.1e-70 237.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|385803211|ref|YP_005839611.1| - 4.9e-05 22.4 0.0 0.00028 20.0 0.0 1.9 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|385803211|ref|YP_005839611.1| - 0.0013 18.1 0.0 0.0022 17.3 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|385803211|ref|YP_005839611.1| - 0.018 14.3 0.0 0.031 13.6 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family CARDB PF07705.11 gi|385803212|ref|YP_005839612.1| - 4.5e-06 26.8 18.5 0.0032 17.7 0.4 4.3 4 0 0 4 4 4 2 CARDB Transglut_C PF00927.22 gi|385803212|ref|YP_005839612.1| - 0.014 15.5 0.1 0.37 11.0 0.0 2.9 3 0 0 3 3 3 0 Transglutaminase family, C-terminal ig like domain DUF4493 PF14900.6 gi|385803212|ref|YP_005839612.1| - 0.021 14.7 12.9 0.25 11.2 0.3 4.1 1 1 2 4 4 4 0 Domain of unknown function (DUF4493) CBM_20 PF00686.19 gi|385803212|ref|YP_005839612.1| - 0.076 12.9 0.0 0.28 11.1 0.0 1.9 2 0 0 2 2 2 0 Starch binding domain CBM_4_9 PF02018.17 gi|385803212|ref|YP_005839612.1| - 0.46 10.7 4.0 0.8 10.0 0.1 2.8 2 1 0 3 3 3 0 Carbohydrate binding domain ABC_tran PF00005.27 gi|385803213|ref|YP_005839613.1| - 5.1e-34 117.7 0.0 7.6e-34 117.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|385803213|ref|YP_005839613.1| - 1.5e-06 27.9 0.1 0.0046 16.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|385803213|ref|YP_005839613.1| - 6.8e-06 26.1 0.5 0.028 14.2 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|385803213|ref|YP_005839613.1| - 0.00013 21.6 0.2 0.00022 20.9 0.2 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|385803213|ref|YP_005839613.1| - 0.00017 21.9 1.2 0.0024 18.2 1.2 2.1 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|385803213|ref|YP_005839613.1| - 0.00056 19.8 0.0 0.00093 19.1 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|385803213|ref|YP_005839613.1| - 0.0017 18.8 0.2 0.0033 17.8 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|385803213|ref|YP_005839613.1| - 0.0099 15.6 0.7 0.064 13.0 0.1 2.1 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|385803213|ref|YP_005839613.1| - 0.01 15.6 0.1 0.046 13.4 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_23 PF13476.6 gi|385803213|ref|YP_005839613.1| - 0.015 15.8 0.0 0.019 15.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain TniB PF05621.11 gi|385803213|ref|YP_005839613.1| - 0.027 13.9 0.1 2.6 7.4 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein AAA_24 PF13479.6 gi|385803213|ref|YP_005839613.1| - 0.045 13.5 0.0 0.08 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|385803213|ref|YP_005839613.1| - 0.05 12.6 0.0 0.091 11.8 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_15 PF13175.6 gi|385803213|ref|YP_005839613.1| - 0.06 13.0 0.0 0.074 12.8 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain G-alpha PF00503.20 gi|385803213|ref|YP_005839613.1| - 0.067 12.3 0.0 0.067 12.3 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_33 PF13671.6 gi|385803213|ref|YP_005839613.1| - 0.097 12.8 0.7 0.13 12.4 0.7 1.7 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|385803213|ref|YP_005839613.1| - 0.13 11.7 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region MacB_PCD PF12704.7 gi|385803214|ref|YP_005839614.1| - 9.1e-19 68.6 8.0 9.1e-19 68.6 8.0 2.4 2 1 1 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|385803214|ref|YP_005839614.1| - 1.9e-12 47.5 11.0 2.9e-12 46.9 2.8 3.0 3 0 0 3 3 3 1 FtsX-like permease family DUF4043 PF13252.6 gi|385803214|ref|YP_005839614.1| - 0.0066 15.6 0.0 0.0095 15.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4043) LptF_LptG PF03739.14 gi|385803214|ref|YP_005839614.1| - 0.34 9.7 5.9 0.62 8.8 5.0 1.8 2 0 0 2 2 2 0 Lipopolysaccharide export system permease LptF/LptG DUF4064 PF13273.6 gi|385803214|ref|YP_005839614.1| - 1.5 9.1 22.3 1.7 9.0 6.5 3.8 3 2 0 3 3 3 0 Protein of unknown function (DUF4064) DUF4131 PF13567.6 gi|385803214|ref|YP_005839614.1| - 8.9 5.9 10.0 0.15 11.7 0.3 2.7 2 2 1 3 3 3 0 Domain of unknown function (DUF4131) GSDH PF07995.11 gi|385803215|ref|YP_005839615.1| - 1.3e-111 373.1 0.0 1.6e-111 372.9 0.0 1.1 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase PapC_C PF13953.6 gi|385803215|ref|YP_005839615.1| - 0.021 14.6 0.2 0.18 11.6 0.0 2.2 2 0 0 2 2 2 0 PapC C-terminal domain EI24 PF07264.11 gi|385803217|ref|YP_005839617.1| - 0.046 13.9 1.8 0.056 13.7 1.8 1.1 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) SKG6 PF08693.10 gi|385803217|ref|YP_005839617.1| - 0.11 12.0 0.7 0.11 12.0 0.7 2.9 3 0 0 3 3 3 0 Transmembrane alpha-helix domain SCAB-ABD PF16711.5 gi|385803218|ref|YP_005839618.1| - 0.033 14.1 0.1 0.072 13.0 0.1 1.6 1 0 0 1 1 1 0 Actin-binding domain of plant-specific actin-binding protein DUF5623 PF18536.1 gi|385803218|ref|YP_005839618.1| - 0.12 12.7 0.1 0.24 11.7 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5623) Taxilin PF09728.9 gi|385803219|ref|YP_005839619.1| - 9.8e-08 31.5 28.7 1.1e-07 31.4 27.4 1.9 1 1 0 1 1 1 1 Myosin-like coiled-coil protein Spc7 PF08317.11 gi|385803219|ref|YP_005839619.1| - 1.4e-07 30.8 75.1 0.0025 16.8 21.7 4.5 2 2 3 5 5 5 4 Spc7 kinetochore protein Seryl_tRNA_N PF02403.22 gi|385803219|ref|YP_005839619.1| - 1e-05 25.7 65.0 0.011 16.0 12.2 5.4 2 2 3 5 5 5 3 Seryl-tRNA synthetase N-terminal domain AAA_23 PF13476.6 gi|385803219|ref|YP_005839619.1| - 2.1e-05 25.1 67.8 5.6e-05 23.7 30.9 4.6 1 1 2 3 3 2 1 AAA domain CENP-F_leu_zip PF10473.9 gi|385803219|ref|YP_005839619.1| - 0.0001 22.3 74.6 0.079 13.0 6.3 5.6 2 2 3 5 5 5 4 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3584 PF12128.8 gi|385803219|ref|YP_005839619.1| - 0.00015 19.5 63.0 0.00092 16.9 26.5 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3584) CALCOCO1 PF07888.11 gi|385803219|ref|YP_005839619.1| - 0.00016 20.7 53.0 0.01 14.8 20.3 2.4 2 0 0 2 2 2 2 Calcium binding and coiled-coil domain (CALCOCO1) like MscS_porin PF12795.7 gi|385803219|ref|YP_005839619.1| - 0.00021 20.9 61.0 0.023 14.2 32.7 2.8 2 1 0 2 2 2 2 Mechanosensitive ion channel porin domain AAA_15 PF13175.6 gi|385803219|ref|YP_005839619.1| - 0.00048 19.9 14.3 0.00048 19.9 14.3 2.6 1 1 0 2 2 1 1 AAA ATPase domain DUF4407 PF14362.6 gi|385803219|ref|YP_005839619.1| - 0.0012 18.3 48.0 0.049 13.0 10.7 3.5 1 1 2 3 3 3 2 Domain of unknown function (DUF4407) DUF1664 PF07889.12 gi|385803219|ref|YP_005839619.1| - 0.0014 18.6 7.8 0.0014 18.6 7.8 6.3 2 2 4 6 6 6 1 Protein of unknown function (DUF1664) APG6_N PF17675.1 gi|385803219|ref|YP_005839619.1| - 0.0016 18.9 79.2 0.014 16.0 18.7 6.3 1 1 4 5 5 5 1 Apg6 coiled-coil region Prefoldin PF02996.17 gi|385803219|ref|YP_005839619.1| - 0.0034 17.3 50.2 0.53 10.2 0.8 7.5 3 2 4 7 7 7 4 Prefoldin subunit DUF724 PF05266.14 gi|385803219|ref|YP_005839619.1| - 0.0036 17.2 61.0 0.31 10.9 10.4 5.2 2 2 2 4 4 4 3 Protein of unknown function (DUF724) ALIX_LYPXL_bnd PF13949.6 gi|385803219|ref|YP_005839619.1| - 0.0047 16.3 18.7 0.0047 16.3 18.7 3.1 2 1 1 3 3 2 1 ALIX V-shaped domain binding to HIV AAA_13 PF13166.6 gi|385803219|ref|YP_005839619.1| - 0.0065 15.2 57.4 0.0094 14.6 25.4 3.0 1 1 2 3 3 3 2 AAA domain DUF5082 PF16888.5 gi|385803219|ref|YP_005839619.1| - 0.011 16.0 15.5 0.011 16.0 15.5 5.6 2 2 3 5 5 5 0 Domain of unknown function (DUF5082) DHR10 PF18595.1 gi|385803219|ref|YP_005839619.1| - 0.012 15.7 72.6 1.1 9.3 1.5 5.7 3 2 2 5 5 5 0 Designed helical repeat protein 10 domain Atg14 PF10186.9 gi|385803219|ref|YP_005839619.1| - 0.026 13.6 66.5 0.029 13.5 15.4 4.2 1 1 1 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 Golgin_A5 PF09787.9 gi|385803219|ref|YP_005839619.1| - 0.04 13.4 74.3 0.038 13.5 11.2 4.3 2 2 2 4 4 4 0 Golgin subfamily A member 5 Fib_alpha PF08702.10 gi|385803219|ref|YP_005839619.1| - 0.048 13.8 59.0 0.18 12.0 10.9 5.4 3 1 3 6 6 6 0 Fibrinogen alpha/beta chain family GAS PF13851.6 gi|385803219|ref|YP_005839619.1| - 0.058 12.7 62.5 0.52 9.6 25.3 4.6 2 2 2 4 4 4 0 Growth-arrest specific micro-tubule binding NPV_P10 PF05531.12 gi|385803219|ref|YP_005839619.1| - 0.082 13.4 46.9 0.47 11.0 1.4 6.8 2 2 4 6 6 6 0 Nucleopolyhedrovirus P10 protein DUF3969 PF13108.6 gi|385803219|ref|YP_005839619.1| - 0.096 12.7 9.1 3.7 7.6 0.9 4.3 3 1 0 3 3 3 0 Protein of unknown function (DUF3969) Fez1 PF06818.15 gi|385803219|ref|YP_005839619.1| - 0.19 12.2 62.4 0.15 12.5 16.3 4.3 1 1 3 4 4 4 0 Fez1 Filament PF00038.21 gi|385803219|ref|YP_005839619.1| - 0.22 11.1 67.4 0.17 11.4 13.0 3.8 1 1 1 3 3 3 0 Intermediate filament protein FapA PF03961.13 gi|385803219|ref|YP_005839619.1| - 0.31 9.6 55.6 0.072 11.7 6.0 4.2 1 1 3 4 4 4 0 Flagellar Assembly Protein A Prominin PF05478.11 gi|385803219|ref|YP_005839619.1| - 0.38 8.7 39.6 0.0046 15.0 14.8 2.8 2 1 1 3 3 3 0 Prominin MAD PF05557.13 gi|385803219|ref|YP_005839619.1| - 0.51 8.6 57.6 0.3 9.4 27.4 2.6 2 0 0 2 2 2 0 Mitotic checkpoint protein BRE1 PF08647.11 gi|385803219|ref|YP_005839619.1| - 0.91 9.6 58.1 0.82 9.8 20.5 5.6 3 2 2 5 5 5 0 BRE1 E3 ubiquitin ligase DUF3450 PF11932.8 gi|385803219|ref|YP_005839619.1| - 1 8.6 67.0 1.6 7.9 4.2 6.8 3 2 3 6 6 6 0 Protein of unknown function (DUF3450) DASH_Spc34 PF08657.10 gi|385803219|ref|YP_005839619.1| - 1.1 9.0 47.9 0.19 11.5 1.3 4.6 3 1 1 4 4 4 0 DASH complex subunit Spc34 DUF812 PF05667.11 gi|385803219|ref|YP_005839619.1| - 1.1 8.0 65.0 0.22 10.3 25.9 3.4 1 1 0 2 2 2 0 Protein of unknown function (DUF812) ERM PF00769.19 gi|385803219|ref|YP_005839619.1| - 1.4 8.6 61.2 0.24 11.2 31.0 2.8 1 1 2 3 3 3 0 Ezrin/radixin/moesin family FliD_N PF02465.18 gi|385803219|ref|YP_005839619.1| - 1.4 9.6 47.8 0.56 10.9 1.5 7.2 3 2 4 7 7 6 0 Flagellar hook-associated protein 2 N-terminus TPR_MLP1_2 PF07926.12 gi|385803219|ref|YP_005839619.1| - 1.6 8.8 70.4 0.53 10.3 10.4 6.3 3 2 3 6 6 5 0 TPR/MLP1/MLP2-like protein TACC_C PF05010.14 gi|385803219|ref|YP_005839619.1| - 1.9 8.3 51.2 0.3 10.8 18.2 4.3 3 2 2 5 5 5 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Phage_GP20 PF06810.11 gi|385803219|ref|YP_005839619.1| - 1.9 8.3 59.2 1.2 8.9 13.3 6.4 3 2 4 7 7 6 0 Phage minor structural protein GP20 HemX PF04375.14 gi|385803219|ref|YP_005839619.1| - 2.4 7.4 50.1 0.38 10.0 8.1 4.5 2 2 2 4 4 4 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF4201 PF13870.6 gi|385803219|ref|YP_005839619.1| - 2.4 7.9 54.9 3 7.5 26.2 3.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4201) BLOC1_2 PF10046.9 gi|385803219|ref|YP_005839619.1| - 2.5 8.5 53.4 4.5 7.6 5.9 6.6 2 2 2 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HMMR_N PF15905.5 gi|385803219|ref|YP_005839619.1| - 2.9 7.3 73.1 0.026 14.0 15.1 4.1 2 2 2 4 4 4 0 Hyaluronan mediated motility receptor N-terminal Cluap1 PF10234.9 gi|385803219|ref|YP_005839619.1| - 3.7 6.9 60.0 0.65 9.3 9.5 5.1 2 2 2 4 4 4 0 Clusterin-associated protein-1 OmpH PF03938.14 gi|385803219|ref|YP_005839619.1| - 4.6 7.6 57.9 3.3 8.0 17.0 5.5 2 2 1 3 3 2 0 Outer membrane protein (OmpH-like) CEP63 PF17045.5 gi|385803219|ref|YP_005839619.1| - 7.7 6.3 57.1 0.55 10.1 21.1 3.4 2 2 0 2 2 2 0 Centrosomal protein of 63 kDa Laminin_II PF06009.12 gi|385803219|ref|YP_005839619.1| - 8.8 6.4 51.6 1.3 9.1 6.1 6.2 3 2 2 5 5 5 0 Laminin Domain II DUF2353 PF09789.9 gi|385803219|ref|YP_005839619.1| - 8.8 5.6 55.7 0.071 12.5 20.9 3.4 1 1 2 3 3 3 0 Uncharacterized coiled-coil protein (DUF2353) adh_short PF00106.25 gi|385803220|ref|YP_005839620.1| - 1.4e-25 89.9 1.9 6.6e-25 87.7 1.9 1.8 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|385803220|ref|YP_005839620.1| - 3.7e-16 59.4 3.9 1.2e-15 57.7 3.9 1.7 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|385803220|ref|YP_005839620.1| - 7.3e-08 32.5 0.6 1.4e-07 31.6 0.6 1.4 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|385803220|ref|YP_005839620.1| - 4.3e-07 29.7 0.1 5.9e-07 29.2 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family PALP PF00291.25 gi|385803220|ref|YP_005839620.1| - 0.005 16.3 2.0 0.005 16.3 2.0 1.6 2 0 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme PTE PF02126.18 gi|385803220|ref|YP_005839620.1| - 0.055 12.9 0.3 0.11 11.9 0.3 1.4 1 0 0 1 1 1 0 Phosphotriesterase family CarboxypepD_reg PF13620.6 gi|385803221|ref|YP_005839621.1| - 8.7e-19 67.6 17.4 1.3e-10 41.4 1.3 4.4 4 0 0 4 4 4 4 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|385803221|ref|YP_005839621.1| - 4e-09 36.4 4.1 3.3e-05 23.8 0.7 3.9 3 1 1 4 4 4 1 CarboxypepD_reg-like domain PEGA PF08308.11 gi|385803221|ref|YP_005839621.1| - 1.5e-06 28.0 4.1 0.0021 17.9 0.2 3.1 2 1 0 2 2 2 2 PEGA domain Big_3_5 PF16640.5 gi|385803221|ref|YP_005839621.1| - 0.00072 19.7 5.5 0.052 13.7 0.4 3.5 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 3) DUF2012 PF09430.10 gi|385803221|ref|YP_005839621.1| - 0.00099 19.2 0.2 0.0048 17.0 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2012) Big_1 PF02369.16 gi|385803221|ref|YP_005839621.1| - 0.0026 17.7 26.1 0.023 14.7 1.1 5.0 5 1 0 5 5 5 3 Bacterial Ig-like domain (group 1) DUF4198 PF10670.9 gi|385803221|ref|YP_005839621.1| - 0.0037 17.7 0.1 0.99 9.7 0.0 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF4198) SdrD_B PF17210.3 gi|385803221|ref|YP_005839621.1| - 0.0042 17.3 3.1 0.016 15.5 1.0 2.5 2 0 0 2 2 2 1 SdrD B-like domain DUF824 PF05688.11 gi|385803221|ref|YP_005839621.1| - 0.02 14.7 0.1 8.1 6.4 0.0 3.7 3 0 0 3 3 3 0 Salmonella repeat of unknown function (DUF824) DUF2606 PF10794.9 gi|385803221|ref|YP_005839621.1| - 0.03 14.1 1.6 0.73 9.6 0.2 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2606) CooC_C PF15976.5 gi|385803221|ref|YP_005839621.1| - 0.044 13.8 0.2 6.3 6.9 0.0 3.0 3 0 0 3 3 3 0 CS1-pili formation C-terminal SpaA PF17802.1 gi|385803221|ref|YP_005839621.1| - 0.065 13.6 3.7 0.21 12.0 0.2 3.0 2 2 0 2 2 2 0 Prealbumin-like fold domain EMP24_GP25L PF01105.24 gi|385803221|ref|YP_005839621.1| - 0.11 12.4 0.1 0.37 10.7 0.1 2.0 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD HSP20 PF00011.21 gi|385803221|ref|YP_005839621.1| - 0.12 12.5 0.1 18 5.6 0.0 2.9 3 0 0 3 3 3 0 Hsp20/alpha crystallin family MG4 PF17789.1 gi|385803221|ref|YP_005839621.1| - 0.25 11.5 7.0 3.1 8.0 0.1 3.8 4 1 0 4 4 4 0 Macroglobulin domain MG4 Invasin_D3 PF09134.10 gi|385803221|ref|YP_005839621.1| - 0.27 11.6 10.5 6.5 7.1 1.9 3.8 3 1 1 4 4 4 0 Invasin, domain 3 Zn-ribbon_8 PF09723.10 gi|385803223|ref|YP_005839623.1| - 0.024 14.7 0.6 0.043 13.9 0.6 1.4 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|385803223|ref|YP_005839623.1| - 0.042 14.1 0.5 0.54 10.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon Adeno_PX PF05829.12 gi|385803224|ref|YP_005839624.1| - 0.25 11.3 3.7 11 6.0 0.0 2.5 2 0 0 2 2 2 0 Adenovirus late L2 mu core protein (Protein X) CBS PF00571.28 gi|385803227|ref|YP_005839627.1| - 1.3e-20 73.6 3.0 3e-11 43.6 0.1 2.2 2 0 0 2 2 2 2 CBS domain Zn-ribbon_8 PF09723.10 gi|385803227|ref|YP_005839627.1| - 0.0002 21.4 2.6 0.00039 20.5 2.6 1.5 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|385803227|ref|YP_005839627.1| - 0.0013 18.7 0.8 0.0013 18.7 0.8 1.9 2 1 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|385803227|ref|YP_005839627.1| - 0.0079 16.2 0.3 0.013 15.5 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|385803227|ref|YP_005839627.1| - 0.036 13.5 5.0 0.12 11.8 5.0 1.8 1 1 0 1 1 1 0 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|385803227|ref|YP_005839627.1| - 0.04 14.1 0.3 0.096 12.9 0.1 1.6 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-C2HC5 PF06221.13 gi|385803227|ref|YP_005839627.1| - 0.072 13.1 0.4 0.13 12.3 0.4 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type Zn_ribbon_SprT PF17283.2 gi|385803227|ref|YP_005839627.1| - 0.19 11.7 1.8 0.59 10.1 1.4 1.8 1 1 1 2 2 2 0 SprT-like zinc ribbon domain TFIIS_C PF01096.18 gi|385803227|ref|YP_005839627.1| - 0.26 11.2 1.7 2.3 8.2 0.0 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_9 PF14369.6 gi|385803227|ref|YP_005839627.1| - 0.36 11.1 4.3 0.98 9.7 4.2 1.8 1 1 0 1 1 1 0 zinc-ribbon zinc_ribbon_2 PF13240.6 gi|385803227|ref|YP_005839627.1| - 0.55 10.0 4.6 0.95 9.3 4.6 1.3 1 0 0 1 1 1 0 zinc-ribbon domain GATase_3 PF07685.14 gi|385803228|ref|YP_005839628.1| - 9.7e-33 113.4 0.0 1.3e-32 113.0 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|385803228|ref|YP_005839628.1| - 3e-11 43.5 0.0 5.2e-11 42.7 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|385803228|ref|YP_005839628.1| - 5.9e-11 42.6 0.0 1.4e-05 25.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain Fer4_15 PF13459.6 gi|385803229|ref|YP_005839629.1| - 8.8e-12 45.6 2.7 1.4e-11 45.0 2.7 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain CbiG_N PF11760.8 gi|385803230|ref|YP_005839630.1| - 3.5e-23 81.4 3.3 1.1e-22 79.8 0.1 3.0 3 0 0 3 3 3 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|385803230|ref|YP_005839630.1| - 1.5e-19 70.7 0.1 3.2e-19 69.6 0.0 1.6 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus AIRS PF00586.24 gi|385803230|ref|YP_005839630.1| - 0.041 14.6 0.3 0.11 13.2 0.3 1.8 1 0 0 1 1 1 0 AIR synthase related protein, N-terminal domain TP_methylase PF00590.20 gi|385803231|ref|YP_005839631.1| - 1.9e-40 139.1 0.5 2.3e-40 138.8 0.5 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases RraB PF06877.11 gi|385803231|ref|YP_005839631.1| - 0.058 14.1 0.0 0.2 12.4 0.0 1.9 2 0 0 2 2 2 0 Regulator of ribonuclease activity B Radical_SAM PF04055.21 gi|385803231|ref|YP_005839631.1| - 0.14 12.5 0.0 0.3 11.4 0.0 1.5 1 1 0 1 1 1 0 Radical SAM superfamily TP_methylase PF00590.20 gi|385803232|ref|YP_005839632.1| - 2.6e-36 125.6 0.1 3.3e-36 125.2 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CopK PF11525.8 gi|385803232|ref|YP_005839632.1| - 0.091 12.4 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Copper resistance protein K Methyltransf_31 PF13847.6 gi|385803233|ref|YP_005839633.1| - 6.6e-06 26.0 0.0 7.4e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|385803233|ref|YP_005839633.1| - 9.2e-06 25.5 0.0 1.4e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|385803233|ref|YP_005839633.1| - 3.4e-05 23.4 0.1 5.5e-05 22.7 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|385803233|ref|YP_005839633.1| - 0.00012 22.7 0.1 0.00021 21.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|385803233|ref|YP_005839633.1| - 0.00014 21.5 0.3 0.00024 20.7 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|385803233|ref|YP_005839633.1| - 0.00029 20.5 0.0 0.00042 20.0 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 CMAS PF02353.20 gi|385803233|ref|YP_005839633.1| - 0.00075 18.9 0.0 0.0011 18.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.12 gi|385803233|ref|YP_005839633.1| - 0.0008 20.0 0.1 0.0013 19.3 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.13 gi|385803233|ref|YP_005839633.1| - 0.0017 17.9 0.0 0.0029 17.2 0.0 1.4 1 0 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_18 PF12847.7 gi|385803233|ref|YP_005839633.1| - 0.0031 17.5 0.1 0.0048 16.8 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|385803233|ref|YP_005839633.1| - 0.0099 15.0 0.1 0.014 14.5 0.1 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase UPF0020 PF01170.18 gi|385803233|ref|YP_005839633.1| - 0.044 13.5 0.0 0.054 13.2 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 GCD14 PF08704.10 gi|385803233|ref|YP_005839633.1| - 0.12 12.0 0.1 0.28 10.8 0.0 1.5 1 1 0 2 2 2 0 tRNA methyltransferase complex GCD14 subunit tRNA_U5-meth_tr PF05958.11 gi|385803233|ref|YP_005839633.1| - 0.12 11.4 0.0 0.16 11.0 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase GATase_3 PF07685.14 gi|385803233|ref|YP_005839633.1| - 0.15 11.6 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain CbiM PF01891.16 gi|385803234|ref|YP_005839634.1| - 1.1e-48 165.8 19.1 1.2e-48 165.7 19.1 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region CbiN PF02553.15 gi|385803235|ref|YP_005839635.1| - 2.2e-10 40.4 0.1 3.1e-10 39.9 0.1 1.2 1 0 0 1 1 1 1 Cobalt transport protein component CbiN CbiQ PF02361.16 gi|385803236|ref|YP_005839636.1| - 3.8e-40 137.8 16.7 3.8e-40 137.8 16.7 1.4 2 0 0 2 2 2 1 Cobalt transport protein ABC_tran PF00005.27 gi|385803237|ref|YP_005839637.1| - 4.7e-29 101.7 0.0 5.9e-29 101.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385803237|ref|YP_005839637.1| - 1.5e-08 34.8 0.0 0.0026 17.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385803237|ref|YP_005839637.1| - 4.1e-07 29.7 0.0 7.9e-05 22.2 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|385803237|ref|YP_005839637.1| - 0.00014 21.6 0.1 0.00025 20.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|385803237|ref|YP_005839637.1| - 0.0013 18.7 0.0 0.003 17.5 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|385803237|ref|YP_005839637.1| - 0.0015 18.9 0.0 0.0042 17.5 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|385803237|ref|YP_005839637.1| - 0.0017 18.1 0.0 0.094 12.4 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|385803237|ref|YP_005839637.1| - 0.0019 18.7 0.0 0.0026 18.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|385803237|ref|YP_005839637.1| - 0.0082 16.4 0.0 0.013 15.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|385803237|ref|YP_005839637.1| - 0.061 13.0 0.0 0.083 12.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|385803237|ref|YP_005839637.1| - 0.077 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|385803237|ref|YP_005839637.1| - 0.085 12.4 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|385803237|ref|YP_005839637.1| - 0.19 11.6 0.0 0.66 9.9 0.0 1.8 2 0 0 2 2 2 0 NTPase cobW PF02492.19 gi|385803237|ref|YP_005839637.1| - 0.2 11.2 0.1 0.4 10.2 0.1 1.5 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RHH_5 PF07878.11 gi|385803238|ref|YP_005839638.1| - 0.014 15.3 0.2 0.021 14.7 0.2 1.3 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 RHH_1 PF01402.21 gi|385803238|ref|YP_005839638.1| - 0.049 13.6 0.1 0.074 13.0 0.1 1.3 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family adh_short_C2 PF13561.6 gi|385803239|ref|YP_005839639.1| - 7.1e-44 150.1 0.0 1.1e-43 149.5 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|385803239|ref|YP_005839639.1| - 5.1e-37 127.2 0.0 6.3e-37 126.9 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|385803239|ref|YP_005839639.1| - 1.5e-08 34.8 0.0 2.1e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 KR domain MFS_1 PF07690.16 gi|385803240|ref|YP_005839640.1| - 2.1e-40 138.7 40.4 2.1e-40 138.7 40.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.19 gi|385803240|ref|YP_005839640.1| - 0.00031 19.6 1.3 0.00031 19.6 1.3 2.0 2 0 0 2 2 2 1 LacY proton/sugar symporter MFS_1_like PF12832.7 gi|385803240|ref|YP_005839640.1| - 0.03 13.2 14.7 0.028 13.3 12.6 1.8 1 1 1 2 2 2 0 MFS_1 like family DDE_Tnp_1 PF01609.21 gi|385803241|ref|YP_005839641.1| - 4.4e-20 72.3 0.0 7.1e-20 71.6 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.6 gi|385803241|ref|YP_005839641.1| - 0.00045 18.6 0.0 0.00059 18.2 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain group 1 DHFR_1 PF00186.19 gi|385803242|ref|YP_005839642.1| - 9.1e-38 129.5 0.0 1.1e-37 129.3 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase RibD_C PF01872.17 gi|385803242|ref|YP_005839642.1| - 0.062 13.1 0.0 0.094 12.5 0.0 1.3 1 1 0 1 1 1 0 RibD C-terminal domain PMSR PF01625.21 gi|385803243|ref|YP_005839643.1| - 3e-65 219.1 1.5 3.5e-65 218.8 1.5 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase Aldedh PF00171.22 gi|385803244|ref|YP_005839644.1| - 2.5e-26 92.2 4.0 6.4e-21 74.4 1.1 2.1 1 1 1 2 2 2 2 Aldehyde dehydrogenase family LTXXQ PF07813.12 gi|385803244|ref|YP_005839644.1| - 0.025 15.3 0.5 0.06 14.1 0.5 1.7 1 1 0 1 1 1 0 LTXXQ motif family protein Pup PF05639.11 gi|385803244|ref|YP_005839644.1| - 2.3 9.2 7.5 3.2 8.7 0.9 3.4 3 0 0 3 3 3 0 Pup-like protein AA_kinase PF00696.28 gi|385803245|ref|YP_005839645.1| - 4.2e-44 151.0 2.5 5.3e-44 150.6 2.5 1.1 1 0 0 1 1 1 1 Amino acid kinase family GCOM2 PF15328.6 gi|385803245|ref|YP_005839645.1| - 2 8.8 6.9 3.4 8.0 6.9 1.4 1 0 0 1 1 1 0 Putative GRINL1B complex locus protein 2 P5CR_dimer PF14748.6 gi|385803246|ref|YP_005839646.1| - 3.8e-33 113.8 0.7 3.8e-33 113.8 0.7 1.6 2 0 0 2 2 2 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|385803246|ref|YP_005839646.1| - 4.9e-08 33.5 0.0 1.8e-07 31.6 0.0 2.0 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|385803246|ref|YP_005839646.1| - 0.00025 21.3 0.0 0.00073 19.7 0.0 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|385803246|ref|YP_005839646.1| - 0.0045 16.4 0.0 0.009 15.4 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|385803246|ref|YP_005839646.1| - 0.012 15.5 0.0 0.029 14.3 0.0 1.7 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PDH PF02153.17 gi|385803246|ref|YP_005839646.1| - 0.048 12.7 0.6 0.16 11.0 0.3 1.8 2 0 0 2 2 2 0 Prephenate dehydrogenase FmdA_AmdA PF03069.15 gi|385803247|ref|YP_005839647.1| - 3.4e-53 180.8 0.0 1.6e-51 175.3 0.0 2.0 1 1 0 1 1 1 1 Acetamidase/Formamidase family Ribosomal_S27e PF01667.17 gi|385803247|ref|YP_005839647.1| - 0.028 14.1 0.0 0.05 13.3 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 DZR PF12773.7 gi|385803247|ref|YP_005839647.1| - 0.046 13.7 0.3 0.088 12.9 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|385803247|ref|YP_005839647.1| - 0.054 13.0 1.1 0.12 11.9 1.1 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|385803247|ref|YP_005839647.1| - 0.17 12.3 0.8 0.37 11.2 0.8 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.6 gi|385803247|ref|YP_005839647.1| - 0.24 11.2 1.2 5.6 6.8 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DUF4379 PF14311.6 gi|385803247|ref|YP_005839647.1| - 0.34 11.3 1.1 0.77 10.2 1.1 1.6 1 0 0 1 1 1 0 Probable Zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|385803247|ref|YP_005839647.1| - 0.54 10.0 4.3 3 7.6 4.3 2.1 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|385803247|ref|YP_005839647.1| - 0.68 9.4 2.8 18 4.9 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|385803247|ref|YP_005839647.1| - 1.1 9.4 3.3 5.2 7.3 3.4 2.1 1 1 1 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.9 gi|385803247|ref|YP_005839647.1| - 2.9 8.1 6.2 12 6.1 0.7 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 ThiS PF02597.20 gi|385803248|ref|YP_005839648.1| - 2.4e-08 34.5 0.0 7.3e-08 32.9 0.0 1.7 2 0 0 2 2 2 1 ThiS family Urm1 PF09138.11 gi|385803248|ref|YP_005839648.1| - 0.0051 17.1 0.0 0.0059 16.9 0.0 1.2 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) MatE PF01554.18 gi|385803250|ref|YP_005839650.1| - 3.4e-43 147.1 43.6 5.8e-23 81.3 14.7 2.5 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|385803250|ref|YP_005839650.1| - 2.6e-07 30.8 9.2 2.6e-07 30.8 9.2 4.9 4 2 1 5 5 5 2 Polysaccharide biosynthesis C-terminal domain DEAD PF00270.29 gi|385803251|ref|YP_005839651.1| - 3.6e-19 69.2 0.0 6.3e-19 68.4 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.10 gi|385803251|ref|YP_005839651.1| - 3.6e-14 53.3 0.0 1.2e-13 51.5 0.0 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.31 gi|385803251|ref|YP_005839651.1| - 2.3e-12 47.3 0.0 1.7e-11 44.4 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|385803251|ref|YP_005839651.1| - 9.9e-10 38.7 0.0 2e-09 37.7 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Hva1_TUDOR PF11160.8 gi|385803251|ref|YP_005839651.1| - 0.028 14.6 0.7 8.7 6.6 0.2 3.1 2 0 0 2 2 2 0 Hypervirulence associated proteins TUDOR domain MBG PF17883.1 gi|385803251|ref|YP_005839651.1| - 0.22 12.1 2.6 0.62 10.7 0.2 3.0 4 0 0 4 4 4 0 MBG domain RNase_H_2 PF13482.6 gi|385803252|ref|YP_005839652.1| - 1.1e-35 123.0 0.0 1.5e-35 122.6 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily HHH_5 PF14520.6 gi|385803252|ref|YP_005839652.1| - 3.2e-07 30.8 0.0 1.8e-06 28.5 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|385803252|ref|YP_005839652.1| - 0.0007 19.7 0.0 0.0015 18.6 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|385803252|ref|YP_005839652.1| - 0.0078 16.0 0.0 0.28 11.1 0.0 3.2 3 0 0 3 3 3 1 Helix-hairpin-helix motif DNA_pol_B_exo2 PF10108.9 gi|385803252|ref|YP_005839652.1| - 0.014 15.1 0.1 0.36 10.5 0.1 2.7 1 1 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB HHH_3 PF12836.7 gi|385803252|ref|YP_005839652.1| - 0.18 12.1 0.0 0.49 10.7 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF1949 PF09186.11 gi|385803254|ref|YP_005839654.1| - 0.025 14.5 0.4 0.071 13.0 0.3 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF1949) Trypsin_2 PF13365.6 gi|385803255|ref|YP_005839655.1| - 7.6e-29 101.5 3.6 1.1e-28 101.1 2.7 1.7 2 0 0 2 2 2 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 gi|385803255|ref|YP_005839655.1| - 2.6e-15 56.5 0.3 8.7e-15 54.8 0.3 1.9 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.26 gi|385803255|ref|YP_005839655.1| - 8.6e-12 45.3 0.2 2.2e-11 44.0 0.2 1.6 1 1 0 1 1 1 1 Trypsin PDZ_6 PF17820.1 gi|385803255|ref|YP_005839655.1| - 0.0018 18.1 0.5 0.011 15.6 0.0 2.5 2 0 0 2 2 2 1 PDZ domain Tricorn_PDZ PF14685.6 gi|385803255|ref|YP_005839655.1| - 0.1 12.6 0.4 0.45 10.5 0.3 2.2 2 1 0 2 2 2 0 Tricorn protease PDZ domain GCV_T PF01571.21 gi|385803256|ref|YP_005839656.1| - 7.2e-46 156.6 0.1 9.6e-46 156.2 0.1 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|385803256|ref|YP_005839656.1| - 3.3e-05 23.7 0.0 0.00013 21.9 0.0 2.0 2 0 0 2 2 2 1 Glycine cleavage T-protein C-terminal barrel domain Phage_holin_3_6 PF07332.11 gi|385803257|ref|YP_005839657.1| - 0.00092 19.2 1.1 0.0011 19.0 1.1 1.0 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III Form_Nir_trans PF01226.17 gi|385803257|ref|YP_005839657.1| - 0.0085 15.5 4.4 0.01 15.2 4.4 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter PMT_4TMC PF16192.5 gi|385803257|ref|YP_005839657.1| - 0.037 13.6 0.8 0.037 13.6 0.8 1.1 1 0 0 1 1 1 0 C-terminal four TMM region of protein-O-mannosyltransferase DUF2207 PF09972.9 gi|385803257|ref|YP_005839657.1| - 0.52 9.0 4.1 0.59 8.8 4.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) HTH_10 PF04967.12 gi|385803258|ref|YP_005839658.1| - 5.7e-17 61.2 0.0 9e-17 60.6 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|385803258|ref|YP_005839658.1| - 3.3e-05 23.3 0.0 6.9e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 BAT PF15915.5 gi|385803258|ref|YP_005839658.1| - 0.00099 19.0 0.0 0.0017 18.3 0.0 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|385803258|ref|YP_005839658.1| - 0.0087 15.9 0.0 0.019 14.9 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|385803258|ref|YP_005839658.1| - 0.051 13.1 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding UPF0122 PF04297.14 gi|385803258|ref|YP_005839658.1| - 0.058 13.6 0.0 0.12 12.6 0.0 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_AsnC-type PF13404.6 gi|385803258|ref|YP_005839658.1| - 0.071 13.0 0.2 0.13 12.1 0.2 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|385803258|ref|YP_005839658.1| - 0.12 12.1 0.0 0.36 10.5 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 Aminotran_5 PF00266.19 gi|385803259|ref|YP_005839659.1| - 9.7e-55 186.0 0.0 1.1e-54 185.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V HTH_10 PF04967.12 gi|385803260|ref|YP_005839660.1| - 2.1e-19 69.1 0.1 3.6e-19 68.3 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|385803260|ref|YP_005839660.1| - 7.2e-07 29.2 6.1 1.1e-06 28.5 6.1 1.4 1 0 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|385803260|ref|YP_005839660.1| - 0.069 12.7 0.0 0.16 11.5 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 BCD PF15461.6 gi|385803261|ref|YP_005839661.1| - 7.2e-73 245.4 21.6 9.7e-73 244.9 21.6 1.2 1 0 0 1 1 1 1 Beta-carotene 15,15'-dioxygenase Epiglycanin_C PF14654.6 gi|385803261|ref|YP_005839661.1| - 1.2 9.2 0.0 1.2 9.2 0.0 3.2 3 0 0 3 3 3 0 Mucin, catalytic, TM and cytoplasmic tail region CSD PF00313.22 gi|385803263|ref|YP_005839663.1| - 1.3e-20 73.0 0.2 1.4e-20 72.9 0.2 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain CusF_Ec PF11604.8 gi|385803263|ref|YP_005839663.1| - 0.035 14.1 0.0 0.044 13.7 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF OB_RNB PF08206.11 gi|385803263|ref|YP_005839663.1| - 0.039 13.6 1.2 0.059 13.1 1.2 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.6 gi|385803263|ref|YP_005839663.1| - 0.051 13.5 1.3 0.072 13.0 1.3 1.3 1 1 0 1 1 1 0 S1-like Rho_RNA_bind PF07497.12 gi|385803263|ref|YP_005839663.1| - 0.053 13.4 0.0 0.057 13.3 0.0 1.1 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain TFIIB PF00382.19 gi|385803264|ref|YP_005839664.1| - 6.2e-43 144.7 0.9 6.7e-23 80.5 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|385803264|ref|YP_005839664.1| - 2.8e-17 62.0 1.7 4.5e-17 61.3 1.7 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 gi|385803264|ref|YP_005839664.1| - 0.0052 16.5 2.5 0.087 12.6 3.0 2.2 1 1 1 2 2 2 1 A2L zinc ribbon domain Sigma70_r4 PF04545.16 gi|385803264|ref|YP_005839664.1| - 0.017 14.7 1.0 0.36 10.4 0.1 3.3 3 1 0 3 3 3 0 Sigma-70, region 4 Ribosomal_S27e PF01667.17 gi|385803264|ref|YP_005839664.1| - 0.021 14.5 0.2 0.041 13.6 0.2 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 Cyclin_C PF02984.19 gi|385803264|ref|YP_005839664.1| - 0.032 14.3 0.0 0.24 11.5 0.0 2.1 2 0 0 2 2 2 0 Cyclin, C-terminal domain Elf1 PF05129.13 gi|385803264|ref|YP_005839664.1| - 0.042 13.9 0.1 0.099 12.7 0.1 1.6 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Zn-ribbon_8 PF09723.10 gi|385803264|ref|YP_005839664.1| - 0.058 13.5 1.4 4.4 7.5 0.3 2.5 2 0 0 2 2 2 0 Zinc ribbon domain HTH_23 PF13384.6 gi|385803264|ref|YP_005839664.1| - 0.075 12.9 0.4 0.74 9.7 0.1 2.8 3 0 0 3 3 3 0 Homeodomain-like domain Trm112p PF03966.16 gi|385803264|ref|YP_005839664.1| - 0.086 13.4 1.2 0.41 11.3 1.2 2.2 1 1 0 1 1 1 0 Trm112p-like protein OrfB_Zn_ribbon PF07282.11 gi|385803264|ref|YP_005839664.1| - 0.11 12.4 0.5 0.32 11.0 0.5 1.8 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HTH_31 PF13560.6 gi|385803264|ref|YP_005839664.1| - 0.13 12.6 1.4 31 5.0 0.1 3.3 3 0 0 3 3 3 0 Helix-turn-helix domain zinc_ribbon_9 PF14369.6 gi|385803264|ref|YP_005839664.1| - 1.5 9.1 4.1 1.6 9.0 0.4 2.4 1 1 1 2 2 2 0 zinc-ribbon MTS PF05175.14 gi|385803265|ref|YP_005839665.1| - 2.3e-11 43.5 0.1 3.9e-11 42.8 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.18 gi|385803265|ref|YP_005839665.1| - 2.4e-10 40.4 0.1 7.4e-10 38.8 0.1 1.8 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.13 gi|385803265|ref|YP_005839665.1| - 3.1e-10 40.0 0.3 4.2e-10 39.5 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|385803265|ref|YP_005839665.1| - 8.8e-10 39.2 0.0 1.9e-09 38.1 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|385803265|ref|YP_005839665.1| - 7.1e-08 32.4 0.0 1.1e-07 31.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|385803265|ref|YP_005839665.1| - 1.1e-07 31.6 0.0 1.5e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 gi|385803265|ref|YP_005839665.1| - 6.2e-07 30.0 0.0 1.2e-06 29.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|385803265|ref|YP_005839665.1| - 2.6e-05 23.9 0.0 3.6e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Ubie_methyltran PF01209.18 gi|385803265|ref|YP_005839665.1| - 3.9e-05 23.1 0.0 6.2e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.6 gi|385803265|ref|YP_005839665.1| - 0.00034 20.6 0.0 0.0005 20.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|385803265|ref|YP_005839665.1| - 0.0027 16.9 0.0 0.0039 16.4 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase RrnaAD PF00398.20 gi|385803265|ref|YP_005839665.1| - 0.0063 15.6 0.0 0.0084 15.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 gi|385803265|ref|YP_005839665.1| - 0.0074 16.1 0.0 0.011 15.6 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|385803265|ref|YP_005839665.1| - 0.017 15.0 0.1 0.03 14.3 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|385803265|ref|YP_005839665.1| - 0.045 14.5 0.0 0.095 13.5 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain DOT1 PF08123.13 gi|385803265|ref|YP_005839665.1| - 0.09 12.3 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_4 PF02390.17 gi|385803265|ref|YP_005839665.1| - 0.17 11.3 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Rhomboid PF01694.22 gi|385803266|ref|YP_005839666.1| - 5.1e-06 26.6 16.4 5.1e-06 26.6 16.4 2.9 2 1 0 2 2 2 1 Rhomboid family DUF2678 PF10856.8 gi|385803266|ref|YP_005839666.1| - 0.013 15.4 1.5 0.025 14.5 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2678) DUF5134 PF17197.4 gi|385803266|ref|YP_005839666.1| - 0.061 13.2 3.2 1 9.2 0.3 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF5134) PalH PF08733.10 gi|385803266|ref|YP_005839666.1| - 0.095 11.7 0.3 1.7 7.6 0.0 2.1 2 0 0 2 2 2 0 PalH/RIM21 DUF2749 PF10907.8 gi|385803266|ref|YP_005839666.1| - 0.12 12.6 0.2 5.7 7.2 0.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2749) ANAPC4_WD40 PF12894.7 gi|385803266|ref|YP_005839666.1| - 0.16 12.3 0.0 0.4 11.0 0.0 1.7 2 0 0 2 2 2 0 Anaphase-promoting complex subunit 4 WD40 domain DUF1772 PF08592.11 gi|385803266|ref|YP_005839666.1| - 0.56 10.5 12.4 0.039 14.3 2.9 3.8 2 1 0 3 3 3 0 Domain of unknown function (DUF1772) UPF0058 PF01893.16 gi|385803267|ref|YP_005839667.1| - 1.4e-34 118.2 0.7 1.6e-34 118.0 0.7 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Arm_APC_u3 PF16629.5 gi|385803267|ref|YP_005839667.1| - 0.0063 16.2 0.7 0.092 12.3 0.2 1.9 1 1 1 2 2 2 1 Armadillo-associated region on APC T7SS_ESX_EspC PF10824.8 gi|385803267|ref|YP_005839667.1| - 0.054 14.0 0.0 0.075 13.5 0.0 1.2 1 0 0 1 1 1 0 Excreted virulence factor EspC, type VII ESX diderm Chorismate_bind PF00425.18 gi|385803269|ref|YP_005839669.1| - 2.5e-70 237.0 0.0 3.4e-70 236.5 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme TPP_enzyme_N PF02776.18 gi|385803270|ref|YP_005839670.1| - 3.5e-36 124.4 0.0 7.9e-36 123.3 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M_2 PF16582.5 gi|385803270|ref|YP_005839670.1| - 1.2e-11 44.8 0.0 1.8e-11 44.2 0.0 1.2 1 0 0 1 1 1 1 Middle domain of thiamine pyrophosphate TPP_enzyme_C PF02775.21 gi|385803270|ref|YP_005839670.1| - 8.9e-08 32.1 0.0 2.5e-07 30.6 0.0 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ECH_1 PF00378.20 gi|385803271|ref|YP_005839671.1| - 5.8e-51 173.2 0.0 7.2e-50 169.6 0.0 1.9 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|385803271|ref|YP_005839671.1| - 3.1e-15 56.5 0.0 7.5e-15 55.2 0.0 1.6 1 1 1 2 2 2 1 Enoyl-CoA hydratase/isomerase UbiA PF01040.18 gi|385803272|ref|YP_005839672.1| - 5.2e-35 121.0 24.0 7.1e-35 120.5 24.0 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family PRA1 PF03208.19 gi|385803272|ref|YP_005839672.1| - 0.0099 15.5 1.3 0.0099 15.5 1.3 2.5 2 1 0 2 2 2 1 PRA1 family protein DctQ PF04290.12 gi|385803272|ref|YP_005839672.1| - 1.3 8.9 12.6 0.62 10.0 0.9 3.3 3 0 0 3 3 3 0 Tripartite ATP-independent periplasmic transporters, DctQ component MR_MLE_C PF13378.6 gi|385803273|ref|YP_005839673.1| - 6.7e-43 146.8 0.5 1.2e-42 145.9 0.5 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|385803273|ref|YP_005839673.1| - 4.7e-05 23.6 0.0 0.00011 22.4 0.0 1.7 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Jiraiya PF15038.6 gi|385803274|ref|YP_005839674.1| - 0.022 14.2 0.4 0.022 14.2 0.4 1.0 1 0 0 1 1 1 0 Jiraiya PetG PF02529.15 gi|385803274|ref|YP_005839674.1| - 0.84 9.5 5.6 1.3 8.9 5.6 1.3 1 0 0 1 1 1 0 Cytochrome B6-F complex subunit 5 PyrI PF01948.18 gi|385803276|ref|YP_005839676.1| - 7e-33 112.7 1.0 9.4e-33 112.3 1.0 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|385803276|ref|YP_005839676.1| - 4.4e-13 48.9 0.4 7.5e-13 48.2 0.4 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.21 gi|385803277|ref|YP_005839677.1| - 4.4e-47 159.8 0.0 1.2e-46 158.4 0.0 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|385803277|ref|YP_005839677.1| - 1.6e-28 99.8 0.0 2.1e-28 99.4 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ELFV_dehydrog PF00208.21 gi|385803278|ref|YP_005839678.1| - 1.4e-72 244.3 0.3 1.8e-72 244.0 0.3 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|385803278|ref|YP_005839678.1| - 1.2e-53 180.4 0.0 2.5e-53 179.4 0.0 1.6 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|385803278|ref|YP_005839678.1| - 0.003 16.9 0.1 0.0066 15.8 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|385803278|ref|YP_005839678.1| - 0.036 13.6 0.1 0.062 12.9 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain FBPase PF00316.20 gi|385803279|ref|YP_005839679.1| - 2.2e-23 82.7 0.0 3.4e-23 82.1 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Inositol_P PF00459.25 gi|385803279|ref|YP_005839679.1| - 0.096 12.2 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Inositol monophosphatase family RP-C_C PF11800.8 gi|385803280|ref|YP_005839680.1| - 0.0014 18.8 4.3 0.0016 18.5 4.3 1.1 1 0 0 1 1 1 1 Replication protein C C-terminal region DUF1664 PF07889.12 gi|385803280|ref|YP_005839680.1| - 0.002 18.2 1.1 0.0027 17.7 1.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) Sec34 PF04136.15 gi|385803280|ref|YP_005839680.1| - 0.0025 17.7 0.8 0.0032 17.3 0.8 1.1 1 0 0 1 1 1 1 Sec34-like family HRDC PF00570.23 gi|385803280|ref|YP_005839680.1| - 0.0029 17.6 0.2 0.57 10.2 0.0 2.3 2 0 0 2 2 2 1 HRDC domain Syntaxin PF00804.25 gi|385803280|ref|YP_005839680.1| - 0.003 17.3 1.8 0.0039 16.9 1.6 1.3 1 1 0 1 1 1 1 Syntaxin BLOC1_2 PF10046.9 gi|385803280|ref|YP_005839680.1| - 0.011 16.0 1.1 0.018 15.3 1.1 1.4 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.11 gi|385803280|ref|YP_005839680.1| - 0.015 14.2 6.3 0.017 14.0 6.3 1.0 1 0 0 1 1 1 0 Spc7 kinetochore protein Synaptonemal_3 PF15191.6 gi|385803280|ref|YP_005839680.1| - 0.018 14.8 0.3 0.024 14.4 0.3 1.2 1 0 0 1 1 1 0 Synaptonemal complex central element protein 3 DUF948 PF06103.11 gi|385803280|ref|YP_005839680.1| - 0.023 14.9 1.7 0.041 14.1 1.7 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) YabA PF06156.13 gi|385803280|ref|YP_005839680.1| - 0.032 14.9 2.4 0.044 14.4 2.4 1.3 1 0 0 1 1 1 0 Initiation control protein YabA HTH_37 PF13744.6 gi|385803280|ref|YP_005839680.1| - 0.051 13.5 1.4 0.069 13.1 1.1 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain Med9 PF07544.13 gi|385803280|ref|YP_005839680.1| - 0.056 13.5 0.7 0.087 12.9 0.7 1.4 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 DUF2730 PF10805.8 gi|385803280|ref|YP_005839680.1| - 0.057 13.5 1.7 0.081 13.0 1.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) T2SSM PF04612.12 gi|385803280|ref|YP_005839680.1| - 0.077 13.0 2.1 0.097 12.7 2.1 1.1 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M CENP-F_leu_zip PF10473.9 gi|385803280|ref|YP_005839680.1| - 0.086 12.9 6.5 0.11 12.5 6.5 1.1 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4718 PF15842.5 gi|385803280|ref|YP_005839680.1| - 0.095 12.5 0.9 0.1 12.4 0.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4718) DASH_Dad2 PF08654.10 gi|385803280|ref|YP_005839680.1| - 0.099 13.1 6.1 0.42 11.1 6.1 2.1 1 1 0 1 1 1 0 DASH complex subunit Dad2 zf-C4H2 PF10146.9 gi|385803280|ref|YP_005839680.1| - 0.13 12.6 4.6 0.27 11.5 4.6 1.6 1 1 0 1 1 1 0 Zinc finger-containing protein DNA_pol_A_exoN PF18305.1 gi|385803280|ref|YP_005839680.1| - 0.13 12.6 0.4 0.86 9.9 0.1 2.1 1 1 1 2 2 2 0 3' to 5' exonuclease C-terminal domain TMF_TATA_bd PF12325.8 gi|385803280|ref|YP_005839680.1| - 0.13 12.5 8.9 1.1 9.5 1.9 2.0 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding Syntaxin-6_N PF09177.11 gi|385803280|ref|YP_005839680.1| - 0.17 12.5 4.0 0.21 12.1 4.0 1.2 1 0 0 1 1 1 0 Syntaxin 6, N-terminal NPV_P10 PF05531.12 gi|385803280|ref|YP_005839680.1| - 0.17 12.4 1.5 0.26 11.8 1.5 1.4 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein ERM PF00769.19 gi|385803280|ref|YP_005839680.1| - 0.2 11.4 10.2 0.27 11.0 10.2 1.1 1 0 0 1 1 1 0 Ezrin/radixin/moesin family eIF3_N PF09440.10 gi|385803280|ref|YP_005839680.1| - 0.21 12.0 2.8 0.25 11.8 2.8 1.2 1 0 0 1 1 1 0 eIF3 subunit 6 N terminal domain TMPIT PF07851.13 gi|385803280|ref|YP_005839680.1| - 0.24 10.6 1.6 0.26 10.5 1.6 1.1 1 0 0 1 1 1 0 TMPIT-like protein HisKA PF00512.25 gi|385803280|ref|YP_005839680.1| - 0.3 11.1 3.1 1.3 9.1 1.9 2.4 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain Sigma70_ner PF04546.13 gi|385803280|ref|YP_005839680.1| - 0.63 9.9 12.6 5 6.9 0.2 2.0 1 1 1 2 2 2 0 Sigma-70, non-essential region HAUS6_N PF14661.6 gi|385803280|ref|YP_005839680.1| - 0.73 9.4 2.9 0.87 9.1 2.9 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus LMBR1 PF04791.16 gi|385803280|ref|YP_005839680.1| - 2.2 7.1 2.9 2.4 6.9 2.9 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein CoA_binding_2 PF13380.6 gi|385803281|ref|YP_005839681.1| - 4.7e-33 114.1 0.1 5.9e-33 113.8 0.1 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|385803281|ref|YP_005839681.1| - 0.0057 17.3 0.0 0.01 16.5 0.0 1.4 1 0 0 1 1 1 1 CoA binding domain UbiA PF01040.18 gi|385803282|ref|YP_005839682.1| - 1.3e-41 142.6 22.5 1.6e-41 142.3 22.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family MccV PF17508.2 gi|385803282|ref|YP_005839682.1| - 0.0084 16.6 1.2 0.024 15.2 1.2 1.8 1 0 0 1 1 1 1 Microcin V bacteriocin Cytochrome_B PF00033.19 gi|385803282|ref|YP_005839682.1| - 0.019 14.8 2.2 0.019 14.8 2.2 2.0 2 0 0 2 2 2 0 Cytochrome b/b6/petB DUF5357 PF17310.2 gi|385803282|ref|YP_005839682.1| - 0.042 12.4 0.1 0.083 11.4 0.1 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5357) DUF1422 PF07226.11 gi|385803282|ref|YP_005839682.1| - 0.19 11.8 5.4 0.08 12.9 1.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1422) FKBP_C PF00254.28 gi|385803283|ref|YP_005839683.1| - 4.3e-18 65.4 0.1 6.2e-18 64.9 0.1 1.3 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase HTH_12 PF08461.10 gi|385803284|ref|YP_005839684.1| - 0.0038 17.1 0.0 0.0068 16.3 0.0 1.6 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain CLZ PF16526.5 gi|385803284|ref|YP_005839684.1| - 0.035 14.5 4.2 0.041 14.2 1.0 2.0 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF16 PF01519.16 gi|385803284|ref|YP_005839684.1| - 0.054 14.0 0.7 0.41 11.1 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function DUF16 HTH_5 PF01022.20 gi|385803284|ref|YP_005839684.1| - 0.055 13.4 0.1 0.11 12.3 0.1 1.5 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF977 PF06163.11 gi|385803284|ref|YP_005839684.1| - 0.057 13.4 0.0 0.061 13.3 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) PhosphMutase PF10143.9 gi|385803284|ref|YP_005839684.1| - 0.099 12.5 0.1 0.13 12.1 0.1 1.2 1 0 0 1 1 1 0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase HHH PF00633.23 gi|385803285|ref|YP_005839685.1| - 0.0027 17.5 0.1 0.0085 15.9 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|385803285|ref|YP_005839685.1| - 0.051 14.2 0.0 1.2 9.8 0.0 2.4 3 0 0 3 3 3 0 Helix-hairpin-helix domain Transposase_20 PF02371.16 gi|385803285|ref|YP_005839685.1| - 0.07 13.4 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 Transposase IS116/IS110/IS902 family Hormone_3 PF00159.18 gi|385803286|ref|YP_005839686.1| - 0.052 13.6 0.1 0.075 13.1 0.1 1.3 1 0 0 1 1 1 0 Pancreatic hormone peptide zf-C2H2_6 PF13912.6 gi|385803292|ref|YP_005839692.1| - 0.0084 16.1 0.2 0.016 15.2 0.2 1.4 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|385803292|ref|YP_005839692.1| - 0.024 15.1 1.0 0.059 13.8 0.2 2.1 1 1 1 2 2 2 0 Zinc finger, C2H2 type MazE_antitoxin PF04014.18 gi|385803293|ref|YP_005839693.1| - 0.0026 17.6 0.2 0.0049 16.8 0.2 1.6 1 1 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 gi|385803293|ref|YP_005839693.1| - 0.12 12.3 0.0 0.31 11.0 0.0 1.7 1 0 0 1 1 1 0 MraZ protein, putative antitoxin-like PIN PF01850.21 gi|385803294|ref|YP_005839694.1| - 0.0069 16.9 0.6 0.0092 16.5 0.6 1.3 1 0 0 1 1 1 1 PIN domain Pfk_N PF18468.1 gi|385803295|ref|YP_005839695.1| - 0.031 14.7 0.2 0.06 13.8 0.0 1.6 2 0 0 2 2 2 0 Phosphofructokinase N-terminal domain yeast DUF3328 PF11807.8 gi|385803295|ref|YP_005839695.1| - 0.11 12.3 0.1 0.18 11.6 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3328) PNP_UDP_1 PF01048.20 gi|385803296|ref|YP_005839696.1| - 1.4e-23 83.4 0.1 1.6e-23 83.2 0.1 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily Afaf PF15339.6 gi|385803297|ref|YP_005839697.1| - 0.14 11.9 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Acrosome formation-associated factor TrmB PF01978.19 gi|385803298|ref|YP_005839698.1| - 0.00064 19.6 0.0 0.00084 19.2 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|385803298|ref|YP_005839698.1| - 0.013 15.5 0.0 0.018 15.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.6 gi|385803298|ref|YP_005839698.1| - 0.014 15.9 0.0 0.016 15.7 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|385803298|ref|YP_005839698.1| - 0.055 13.4 0.0 0.065 13.1 0.0 1.2 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|385803300|ref|YP_005839700.1| - 2.1e-12 46.8 0.1 5.3e-12 45.4 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|385803300|ref|YP_005839700.1| - 4e-07 29.8 0.0 1.5e-06 28.0 0.0 2.0 2 1 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|385803300|ref|YP_005839700.1| - 7.8e-07 29.1 0.0 1.5e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|385803300|ref|YP_005839700.1| - 2.5e-06 27.2 0.0 7.1e-06 25.7 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|385803300|ref|YP_005839700.1| - 4.3e-06 26.2 0.0 2.2e-05 23.9 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|385803300|ref|YP_005839700.1| - 2.9e-05 23.9 0.0 6.6e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|385803300|ref|YP_005839700.1| - 0.00018 21.4 0.0 0.00042 20.2 0.0 1.6 1 1 0 1 1 1 1 MarR family HTH_39 PF14090.6 gi|385803300|ref|YP_005839700.1| - 0.0028 17.4 0.0 0.007 16.1 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|385803300|ref|YP_005839700.1| - 0.0073 16.2 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_28 PF13518.6 gi|385803300|ref|YP_005839700.1| - 0.021 14.9 0.0 0.1 12.7 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|385803300|ref|YP_005839700.1| - 0.025 15.0 0.0 0.046 14.1 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_DeoR PF08220.12 gi|385803300|ref|YP_005839700.1| - 0.028 14.2 0.0 0.06 13.1 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain PadR PF03551.14 gi|385803300|ref|YP_005839700.1| - 0.039 13.9 0.0 0.077 13.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Ribosomal_S25 PF03297.15 gi|385803300|ref|YP_005839700.1| - 0.044 14.0 0.0 0.083 13.1 0.0 1.4 1 0 0 1 1 1 0 S25 ribosomal protein HTH_27 PF13463.6 gi|385803300|ref|YP_005839700.1| - 0.058 13.9 0.0 0.11 13.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain LpxC PF03331.13 gi|385803300|ref|YP_005839700.1| - 0.086 12.3 0.0 0.093 12.2 0.0 1.2 1 0 0 1 1 1 0 UDP-3-O-acyl N-acetylglycosamine deacetylase HTH_29 PF13551.6 gi|385803300|ref|YP_005839700.1| - 0.089 12.8 0.0 1.2 9.2 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn helix Rrf2 PF02082.20 gi|385803300|ref|YP_005839700.1| - 0.11 12.9 0.0 0.42 11.0 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator FaeA PF04703.12 gi|385803300|ref|YP_005839700.1| - 0.12 12.8 0.0 0.24 11.8 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein HTH_IclR PF09339.10 gi|385803303|ref|YP_005839703.1| - 0.00012 21.8 0.1 0.00036 20.3 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|385803303|ref|YP_005839703.1| - 0.00025 20.9 0.1 0.0011 18.8 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|385803303|ref|YP_005839703.1| - 0.00076 19.4 0.0 0.097 12.6 0.0 2.5 2 0 0 2 2 2 1 HTH domain TrmB PF01978.19 gi|385803303|ref|YP_005839703.1| - 0.0008 19.2 0.0 0.0032 17.3 0.0 2.0 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|385803303|ref|YP_005839703.1| - 0.0055 16.7 0.4 0.08 13.0 0.0 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|385803303|ref|YP_005839703.1| - 0.016 14.7 0.8 0.036 13.6 0.0 2.0 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_6 PF01418.17 gi|385803303|ref|YP_005839703.1| - 0.021 14.8 0.0 0.11 12.5 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family HTH_28 PF13518.6 gi|385803303|ref|YP_005839703.1| - 0.072 13.2 0.0 0.21 11.8 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1192 PF06698.11 gi|385803303|ref|YP_005839703.1| - 1.2 9.3 5.6 2.6 8.1 0.2 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF1192) TrmB PF01978.19 gi|385803304|ref|YP_005839704.1| - 7.8e-11 41.7 0.4 3e-10 39.8 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|385803304|ref|YP_005839704.1| - 2.2e-05 24.4 0.0 7e-05 22.8 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|385803304|ref|YP_005839704.1| - 6.8e-05 22.4 0.0 0.00041 19.9 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding F-112 PF09645.10 gi|385803304|ref|YP_005839704.1| - 0.00012 22.2 0.0 0.25 11.5 0.0 2.2 2 0 0 2 2 2 2 F-112 protein HTH_5 PF01022.20 gi|385803304|ref|YP_005839704.1| - 0.00015 21.5 0.0 0.00042 20.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|385803304|ref|YP_005839704.1| - 0.00045 20.1 0.5 0.0022 17.8 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|385803304|ref|YP_005839704.1| - 0.0032 17.2 0.2 0.017 14.9 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|385803304|ref|YP_005839704.1| - 0.03 14.8 0.1 0.07 13.6 0.1 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|385803304|ref|YP_005839704.1| - 0.044 14.1 0.0 0.089 13.2 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor PadR PF03551.14 gi|385803304|ref|YP_005839704.1| - 0.068 13.1 0.0 0.27 11.2 0.0 2.1 1 1 0 2 2 2 0 Transcriptional regulator PadR-like family HTH_DeoR PF08220.12 gi|385803304|ref|YP_005839704.1| - 0.07 12.9 0.0 0.22 11.3 0.0 1.9 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Methyltransf_21 PF05050.12 gi|385803307|ref|YP_005839707.1| - 9.1e-19 68.1 0.0 1.2e-18 67.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain V_cholerae_RfbT PF05575.11 gi|385803307|ref|YP_005839707.1| - 2.1e-05 24.0 0.0 2.7e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein Met_10 PF02475.16 gi|385803307|ref|YP_005839707.1| - 2.9e-05 23.9 0.1 5.1e-05 23.1 0.1 1.4 1 1 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|385803307|ref|YP_005839707.1| - 0.00096 18.8 0.0 0.0017 18.1 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.14 gi|385803307|ref|YP_005839707.1| - 0.0016 18.0 0.0 0.0026 17.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|385803307|ref|YP_005839707.1| - 0.0035 17.3 0.0 0.17 11.8 0.0 2.2 1 1 1 2 2 2 1 Methyltransferase domain PrmA PF06325.13 gi|385803307|ref|YP_005839707.1| - 0.0045 16.4 0.1 0.0065 15.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|385803307|ref|YP_005839707.1| - 0.0093 16.6 0.0 0.016 15.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|385803307|ref|YP_005839707.1| - 0.12 13.1 0.0 0.22 12.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.20 gi|385803307|ref|YP_005839707.1| - 0.2 10.7 0.0 0.27 10.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase HicB PF05534.12 gi|385803309|ref|YP_005839709.1| - 0.0013 18.5 0.0 0.38 10.6 0.0 2.3 2 0 0 2 2 2 2 HicB family DUF4238 PF14022.6 gi|385803309|ref|YP_005839709.1| - 0.049 13.1 0.4 0.065 12.7 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4238) Tim44 PF04280.15 gi|385803309|ref|YP_005839709.1| - 0.1 12.7 0.1 0.17 12.0 0.1 1.4 1 0 0 1 1 1 0 Tim44-like domain LOR PF04525.12 gi|385803310|ref|YP_005839710.1| - 4.1e-07 29.8 1.0 1.9e-05 24.3 0.2 2.8 1 1 2 3 3 3 2 LURP-one-related Scramblase PF03803.15 gi|385803310|ref|YP_005839710.1| - 0.075 12.3 0.1 6.4 6.0 0.0 2.5 1 1 0 2 2 2 0 Scramblase Glyco_hydro_31 PF01055.26 gi|385803311|ref|YP_005839711.1| - 2.2e-104 350.1 0.2 2.9e-104 349.7 0.2 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.6 gi|385803311|ref|YP_005839711.1| - 1.5e-12 47.6 0.0 5.3e-12 45.9 0.0 2.0 2 0 0 2 2 2 1 Galactose mutarotase-like DUF4968 PF16338.5 gi|385803311|ref|YP_005839711.1| - 0.035 14.4 0.0 0.11 12.8 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4968) SGL PF08450.12 gi|385803312|ref|YP_005839712.1| - 4.2e-07 29.8 1.8 0.00068 19.3 1.2 3.1 1 1 1 2 2 2 2 SMP-30/Gluconolactonase/LRE-like region Reg_prop PF07494.11 gi|385803312|ref|YP_005839712.1| - 0.017 15.3 0.1 3.1 8.3 0.0 4.1 4 0 0 4 4 4 0 Two component regulator propeller NHL PF01436.21 gi|385803312|ref|YP_005839712.1| - 0.44 10.7 8.2 68 3.8 0.1 5.2 5 0 0 5 5 5 0 NHL repeat Sensor PF13796.6 gi|385803313|ref|YP_005839713.1| - 2.3e-27 96.0 15.8 3.4e-27 95.5 15.8 1.3 1 0 0 1 1 1 1 Putative sensor DUF454 PF04304.13 gi|385803313|ref|YP_005839713.1| - 0.011 15.8 0.7 0.011 15.8 0.7 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF454) UL41A PF17591.2 gi|385803313|ref|YP_005839713.1| - 0.7 10.0 2.5 2.6 8.2 0.0 2.5 3 0 0 3 3 3 0 Herpesvirus UL41A DUF3487 PF11990.8 gi|385803313|ref|YP_005839713.1| - 8.3 6.3 7.3 1.3 8.9 0.4 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3487) DUF2250 PF10007.9 gi|385803314|ref|YP_005839714.1| - 9.2e-64 211.6 2.7 1.3e-31 108.6 0.1 2.4 2 0 0 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2250) FbpA PF05833.11 gi|385803314|ref|YP_005839714.1| - 7.6e-05 21.6 0.2 7.6e-05 21.6 0.2 1.7 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) DUF4423 PF14394.6 gi|385803314|ref|YP_005839714.1| - 0.0019 18.0 0.0 0.088 12.5 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) HTH_Crp_2 PF13545.6 gi|385803314|ref|YP_005839714.1| - 0.0064 16.5 0.3 0.16 12.0 0.0 2.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain DUF3116 PF11313.8 gi|385803314|ref|YP_005839714.1| - 0.063 13.1 0.5 18 5.3 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3116) HTH_20 PF12840.7 gi|385803314|ref|YP_005839714.1| - 0.22 11.6 1.6 27 4.9 0.1 3.2 2 2 0 2 2 2 0 Helix-turn-helix domain Usp PF00582.26 gi|385803315|ref|YP_005839715.1| - 1.7e-09 38.3 0.4 4.1e-09 37.1 0.4 1.6 1 1 0 1 1 1 1 Universal stress protein family DNA_ligase_A_C PF04679.15 gi|385803315|ref|YP_005839715.1| - 0.12 13.0 0.0 0.78 10.4 0.0 2.0 2 0 0 2 2 2 0 ATP dependent DNA ligase C terminal region Spermine_synth PF01564.17 gi|385803318|ref|YP_005839718.1| - 1.5e-13 50.6 0.0 2.5e-13 49.8 0.0 1.3 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Methyltransf_25 PF13649.6 gi|385803318|ref|YP_005839718.1| - 0.0083 16.8 0.0 0.017 15.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|385803318|ref|YP_005839718.1| - 0.053 13.1 0.0 0.085 12.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain DUF2617 PF10936.8 gi|385803319|ref|YP_005839719.1| - 6.1e-05 23.2 0.7 0.00015 21.8 0.7 1.6 1 1 0 1 1 1 1 Protein of unknown function DUF2617 Pentapeptide_3 PF13576.6 gi|385803320|ref|YP_005839720.1| - 1.9e-31 107.9 95.2 9.8e-09 35.2 13.9 11.6 4 1 6 11 11 11 8 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.16 gi|385803320|ref|YP_005839720.1| - 0.00015 21.7 8.9 0.00015 21.7 8.9 2.4 2 1 0 2 2 2 1 Ion channel PepSY_like PF11396.8 gi|385803320|ref|YP_005839720.1| - 0.47 11.0 2.6 1.3 9.6 1.0 2.4 2 0 0 2 2 2 0 Putative beta-lactamase-inhibitor-like, PepSY-like DUF3060 PF11259.8 gi|385803321|ref|YP_005839721.1| - 0.0022 17.7 2.6 0.0037 16.9 0.4 2.6 2 1 0 2 2 2 1 Protein of unknown function (DUF3060) zinc_ribbon_15 PF17032.5 gi|385803321|ref|YP_005839721.1| - 0.037 14.8 0.1 0.068 13.9 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon family DZR PF12773.7 gi|385803321|ref|YP_005839721.1| - 0.051 13.6 0.2 0.097 12.7 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|385803321|ref|YP_005839721.1| - 0.076 13.1 0.4 3.1 8.0 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Svf1 PF08622.10 gi|385803321|ref|YP_005839721.1| - 0.16 12.0 0.0 0.5 10.4 0.0 2.0 2 0 0 2 2 2 0 Svf1-like N-terminal lipocalin domain Zn_Tnp_IS91 PF14319.6 gi|385803321|ref|YP_005839721.1| - 0.34 11.0 0.8 10 6.3 0.0 2.2 1 1 1 2 2 2 0 Transposase zinc-binding domain zf-ribbon_3 PF13248.6 gi|385803321|ref|YP_005839721.1| - 7.7 6.1 6.4 0.31 10.5 0.5 1.7 2 0 0 2 2 2 0 zinc-ribbon domain Sporozoite_P67 PF05642.11 gi|385803322|ref|YP_005839722.1| - 0.016 13.4 0.8 0.016 13.3 0.8 1.0 1 0 0 1 1 1 0 Sporozoite P67 surface antigen ABC2_membrane_5 PF13346.6 gi|385803322|ref|YP_005839722.1| - 4.4 6.8 9.5 12 5.3 9.5 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF4396 PF14342.6 gi|385803322|ref|YP_005839722.1| - 5.6 7.3 8.2 4.8 7.5 4.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4396) ToxB_N PF18224.1 gi|385803324|ref|YP_005839724.1| - 0.085 12.8 1.0 0.22 11.5 1.0 1.8 1 0 0 1 1 1 0 ToxB N-terminal domain YqhR PF11085.8 gi|385803324|ref|YP_005839724.1| - 3.3 7.6 7.1 5.7 6.8 7.1 1.3 1 0 0 1 1 1 0 Conserved membrane protein YqhR PMSR PF01625.21 gi|385803326|ref|YP_005839726.1| - 7.8e-31 107.3 0.0 1.1e-30 106.8 0.0 1.2 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase SelR PF01641.18 gi|385803327|ref|YP_005839727.1| - 1.6e-49 167.0 0.1 1.8e-49 166.8 0.1 1.0 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.14 gi|385803327|ref|YP_005839727.1| - 0.0016 18.6 0.0 0.0026 18.0 0.0 1.4 1 0 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly zinc_ribbon_10 PF10058.9 gi|385803327|ref|YP_005839727.1| - 0.011 15.4 0.1 0.24 11.2 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Cytochrome_C7 PF14522.6 gi|385803327|ref|YP_005839727.1| - 0.032 14.2 0.3 0.054 13.5 0.3 1.4 1 1 0 1 1 1 0 Cytochrome c7 and related cytochrome c HECT_2 PF09814.9 gi|385803327|ref|YP_005839727.1| - 0.17 10.7 0.9 3.9 6.2 0.0 2.0 1 1 1 2 2 2 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding CutA1 PF03091.15 gi|385803328|ref|YP_005839728.1| - 2.5e-26 91.4 0.2 2.8e-26 91.3 0.2 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein bMG10 PF17973.1 gi|385803328|ref|YP_005839728.1| - 0.017 15.3 0.0 0.021 15.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial Alpha-2-macroglobulin MG10 domain PAS_9 PF13426.7 gi|385803329|ref|YP_005839729.1| - 1.1e-13 51.3 0.0 1.3e-13 51.0 0.0 1.1 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 gi|385803329|ref|YP_005839729.1| - 2.2e-08 34.3 0.0 3.5e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|385803329|ref|YP_005839729.1| - 2.2e-07 30.8 0.0 3.5e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|385803329|ref|YP_005839729.1| - 1.3e-05 25.1 0.0 1.9e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 PAS domain PAS_12 PF18095.1 gi|385803329|ref|YP_005839729.1| - 0.016 14.9 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 UPF0242 C-terminal PAS-like domain PAS_4 PF08448.10 gi|385803329|ref|YP_005839729.1| - 0.15 12.4 0.0 0.16 12.2 0.0 1.2 1 0 0 1 1 1 0 PAS fold Peptidase_S15 PF02129.18 gi|385803330|ref|YP_005839730.1| - 1.3e-49 169.3 0.7 1.9e-49 168.7 0.7 1.3 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) PepX_C PF08530.10 gi|385803330|ref|YP_005839730.1| - 9.9e-40 136.9 0.1 1.5e-39 136.3 0.1 1.3 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Peptidase_S9 PF00326.21 gi|385803330|ref|YP_005839730.1| - 7.1e-06 25.7 0.7 1.5e-05 24.5 0.7 1.5 1 0 0 1 1 1 1 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 gi|385803330|ref|YP_005839730.1| - 0.017 14.4 0.1 0.027 13.7 0.1 1.2 1 0 0 1 1 1 0 Serine aminopeptidase, S33 Xan_ur_permease PF00860.20 gi|385803331|ref|YP_005839731.1| - 2.5e-74 250.3 47.4 5e-74 249.3 47.4 1.5 1 1 0 1 1 1 1 Permease family MFS_MOT1 PF16983.5 gi|385803331|ref|YP_005839731.1| - 0.17 12.3 27.5 0.091 13.2 7.8 4.6 3 2 1 4 4 4 0 Molybdate transporter of MFS superfamily Oxidored_q2 PF00420.24 gi|385803332|ref|YP_005839732.1| - 0.36 10.5 1.9 4.5 7.0 0.0 2.2 1 1 1 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Amidohydro_1 PF01979.20 gi|385803333|ref|YP_005839733.1| - 6.6e-20 71.7 0.0 1.4e-19 70.6 0.0 1.6 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|385803333|ref|YP_005839733.1| - 3.1e-13 50.0 0.4 1.5e-05 24.7 0.1 2.4 3 0 0 3 3 3 2 Amidohydrolase family IclR PF01614.18 gi|385803334|ref|YP_005839734.1| - 7.9e-31 106.6 0.0 1.4e-30 105.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|385803334|ref|YP_005839734.1| - 7.7e-11 41.6 0.1 5.6e-10 38.9 0.0 2.5 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|385803334|ref|YP_005839734.1| - 1.6e-08 34.2 0.0 3.1e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|385803334|ref|YP_005839734.1| - 2.8e-07 30.0 0.0 7.4e-07 28.6 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|385803334|ref|YP_005839734.1| - 1.5e-05 24.8 0.0 3e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|385803334|ref|YP_005839734.1| - 2.2e-05 24.3 0.0 0.0002 21.2 0.0 2.4 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|385803334|ref|YP_005839734.1| - 0.00038 20.5 0.0 0.0011 19.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|385803334|ref|YP_005839734.1| - 0.0011 18.7 0.0 0.0021 17.8 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|385803334|ref|YP_005839734.1| - 0.002 17.9 0.0 0.01 15.7 0.0 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain DUF4423 PF14394.6 gi|385803334|ref|YP_005839734.1| - 0.0038 17.0 0.0 0.0071 16.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Fe_dep_repress PF01325.19 gi|385803334|ref|YP_005839734.1| - 0.006 16.8 0.0 0.011 15.9 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|385803334|ref|YP_005839734.1| - 0.01 16.1 0.0 0.027 14.8 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_11 PF08279.12 gi|385803334|ref|YP_005839734.1| - 0.014 15.3 0.0 0.037 14.0 0.0 1.7 1 0 0 1 1 1 0 HTH domain HTH_34 PF13601.6 gi|385803334|ref|YP_005839734.1| - 0.024 14.8 0.0 0.048 13.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|385803334|ref|YP_005839734.1| - 0.029 14.2 0.0 0.088 12.7 0.0 1.8 1 0 0 1 1 1 0 MarR family HTH_40 PF14493.6 gi|385803334|ref|YP_005839734.1| - 0.03 14.8 0.0 0.11 13.0 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_45 PF14947.6 gi|385803334|ref|YP_005839734.1| - 0.034 14.1 0.0 0.06 13.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DUF2250 PF10007.9 gi|385803334|ref|YP_005839734.1| - 0.038 14.1 0.0 0.078 13.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) LexA_DNA_bind PF01726.16 gi|385803334|ref|YP_005839734.1| - 0.065 13.0 0.0 0.26 11.1 0.0 2.0 2 0 0 2 2 2 0 LexA DNA binding domain E3_UFM1_ligase PF09743.9 gi|385803334|ref|YP_005839734.1| - 0.15 11.7 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 E3 UFM1-protein ligase 1 Cyclase PF04199.13 gi|385803335|ref|YP_005839735.1| - 2.5e-29 102.2 0.3 4.2e-29 101.5 0.3 1.3 1 0 0 1 1 1 1 Putative cyclase ADH_N PF08240.12 gi|385803336|ref|YP_005839736.1| - 5.5e-25 87.4 0.0 9.6e-25 86.6 0.0 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|385803336|ref|YP_005839736.1| - 1.3e-14 54.3 0.1 2.8e-14 53.2 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|385803336|ref|YP_005839736.1| - 3.5e-07 31.3 0.1 6.3e-07 30.5 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|385803336|ref|YP_005839736.1| - 8.7e-05 21.9 1.2 0.00017 21.0 0.7 1.6 1 1 1 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|385803336|ref|YP_005839736.1| - 0.0044 16.9 0.2 0.0066 16.4 0.2 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain adh_short PF00106.25 gi|385803336|ref|YP_005839736.1| - 0.0061 16.0 0.3 0.0097 15.4 0.3 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|385803336|ref|YP_005839736.1| - 0.0083 15.7 0.2 0.014 14.9 0.2 1.5 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase RmlD_sub_bind PF04321.17 gi|385803336|ref|YP_005839736.1| - 0.0096 15.0 0.1 0.014 14.5 0.1 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|385803336|ref|YP_005839736.1| - 0.042 13.3 0.2 0.066 12.7 0.2 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NmrA PF05368.13 gi|385803336|ref|YP_005839736.1| - 0.081 12.5 0.5 0.14 11.7 0.5 1.3 1 0 0 1 1 1 0 NmrA-like family UDPG_MGDP_dh_N PF03721.14 gi|385803336|ref|YP_005839736.1| - 0.086 12.4 0.1 0.14 11.7 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|385803336|ref|YP_005839736.1| - 0.11 11.9 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CoA_transf_3 PF02515.17 gi|385803337|ref|YP_005839737.1| - 3e-121 405.0 0.0 3.4e-121 404.8 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III SAM_4 PF18017.1 gi|385803337|ref|YP_005839737.1| - 0.0099 15.8 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 1 SAM domain (Sterile alpha motif) VirC2 PF07181.11 gi|385803337|ref|YP_005839737.1| - 0.064 12.7 0.0 0.1 12.0 0.0 1.2 1 0 0 1 1 1 0 VirC2 protein XdhC_C PF13478.6 gi|385803338|ref|YP_005839738.1| - 1.1e-26 93.8 0.0 2.3e-26 92.8 0.0 1.5 1 0 0 1 1 1 1 XdhC Rossmann domain XdhC_CoxI PF02625.16 gi|385803338|ref|YP_005839738.1| - 2.6e-21 75.6 2.0 4.5e-17 62.0 0.3 2.5 2 0 0 2 2 2 2 XdhC and CoxI family FAD_binding_5 PF00941.21 gi|385803339|ref|YP_005839739.1| - 2.2e-42 144.7 0.0 3e-42 144.2 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 gi|385803339|ref|YP_005839739.1| - 7.1e-18 64.7 0.2 1.2e-17 64.0 0.2 1.3 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Fer2_2 PF01799.20 gi|385803340|ref|YP_005839740.1| - 1.2e-30 105.3 0.1 1.2e-30 105.3 0.1 1.7 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|385803340|ref|YP_005839740.1| - 8.9e-07 28.8 0.4 8.9e-07 28.8 0.4 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|385803340|ref|YP_005839740.1| - 2.2e-05 24.4 0.1 4.1e-05 23.5 0.1 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Peptidase_M60_C PF18630.1 gi|385803340|ref|YP_005839740.1| - 0.16 12.1 0.1 0.72 10.0 0.0 2.0 2 0 0 2 2 2 0 Peptidase M60 C-terminal domain DHODB_Fe-S_bind PF10418.9 gi|385803340|ref|YP_005839740.1| - 7.6 6.4 10.8 0.36 10.7 4.9 1.9 2 0 0 2 2 2 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Ald_Xan_dh_C2 PF02738.18 gi|385803341|ref|YP_005839741.1| - 6e-144 480.5 0.0 7.1e-144 480.3 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|385803341|ref|YP_005839741.1| - 3.7e-20 72.3 0.0 9.8e-20 71.0 0.0 1.8 2 0 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DUF4278 PF14105.6 gi|385803341|ref|YP_005839741.1| - 0.071 13.6 4.1 2 8.9 0.0 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4278) NTP_transf_3 PF12804.7 gi|385803342|ref|YP_005839742.1| - 6.7e-29 101.3 0.1 8.2e-29 101.0 0.1 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|385803342|ref|YP_005839742.1| - 1.4e-05 24.9 0.9 2.1e-05 24.4 0.9 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|385803342|ref|YP_005839742.1| - 0.0012 18.8 0.0 0.0014 18.6 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase STAS PF01740.21 gi|385803342|ref|YP_005839742.1| - 0.15 11.7 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 STAS domain HxlR PF01638.17 gi|385803343|ref|YP_005839743.1| - 8.2e-12 44.8 0.3 6e-11 42.0 0.1 2.1 2 0 0 2 2 2 1 HxlR-like helix-turn-helix Response_reg PF00072.24 gi|385803343|ref|YP_005839743.1| - 1.5e-10 41.2 0.1 2.7e-10 40.4 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain DUF4364 PF14277.6 gi|385803343|ref|YP_005839743.1| - 2.7e-05 24.0 1.5 0.00012 21.9 0.6 2.2 1 1 2 3 3 3 1 Domain of unknown function (DUF4364) HTH_45 PF14947.6 gi|385803343|ref|YP_005839743.1| - 0.00026 20.9 0.1 0.00058 19.8 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DUF2114 PF09887.9 gi|385803343|ref|YP_005839743.1| - 0.023 13.2 0.0 0.032 12.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2114) TFIIE_alpha PF02002.17 gi|385803343|ref|YP_005839743.1| - 0.046 13.6 0.2 0.21 11.5 0.1 2.3 2 1 0 2 2 2 0 TFIIE alpha subunit DNA_pol3_beta PF00712.19 gi|385803343|ref|YP_005839743.1| - 0.079 13.1 0.2 0.19 11.8 0.2 1.6 1 1 0 1 1 1 0 DNA polymerase III beta subunit, N-terminal domain Usp PF00582.26 gi|385803344|ref|YP_005839744.1| - 2.8e-06 27.9 0.7 0.12 12.9 0.3 3.0 2 1 0 2 2 2 2 Universal stress protein family HTH_20 PF12840.7 gi|385803346|ref|YP_005839746.1| - 8.4e-05 22.6 0.0 0.00015 21.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|385803346|ref|YP_005839746.1| - 0.0003 20.7 0.1 0.00052 19.9 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|385803346|ref|YP_005839746.1| - 0.00084 18.8 0.1 0.0015 18.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|385803346|ref|YP_005839746.1| - 0.00088 18.9 0.1 0.0018 17.9 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|385803346|ref|YP_005839746.1| - 0.0033 17.1 0.2 0.0065 16.2 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain FUR PF01475.19 gi|385803346|ref|YP_005839746.1| - 0.0039 17.3 0.4 0.0048 17.0 0.4 1.3 1 1 0 1 1 1 1 Ferric uptake regulator family HTH_IclR PF09339.10 gi|385803346|ref|YP_005839746.1| - 0.0051 16.6 0.0 0.0078 16.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.6 gi|385803346|ref|YP_005839746.1| - 0.0066 16.2 0.1 0.011 15.5 0.1 1.3 1 0 0 1 1 1 1 Homeodomain-like domain TrmB PF01978.19 gi|385803346|ref|YP_005839746.1| - 0.016 15.1 0.1 0.025 14.5 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB CdiI_N PF18228.1 gi|385803346|ref|YP_005839746.1| - 0.046 13.6 0.1 0.11 12.3 0.1 1.6 1 1 0 1 1 1 0 CdiI N-terminal domain HTH_AsnC-type PF13404.6 gi|385803346|ref|YP_005839746.1| - 0.052 13.4 0.1 0.084 12.7 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain LUC7 PF03194.15 gi|385803346|ref|YP_005839746.1| - 0.057 13.1 2.3 0.065 12.9 2.3 1.0 1 0 0 1 1 1 0 LUC7 N_terminus MarR_2 PF12802.7 gi|385803346|ref|YP_005839746.1| - 0.088 12.7 0.1 0.14 12.1 0.1 1.3 1 0 0 1 1 1 0 MarR family HTH_17 PF12728.7 gi|385803346|ref|YP_005839746.1| - 0.14 12.3 0.1 0.38 11.0 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|385803346|ref|YP_005839746.1| - 0.15 11.9 0.2 0.73 9.7 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family AA_permease_2 PF13520.6 gi|385803347|ref|YP_005839747.1| - 8.4e-44 150.1 40.1 1e-43 149.8 40.1 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|385803347|ref|YP_005839747.1| - 2.1e-38 132.1 38.7 3e-38 131.6 38.7 1.1 1 0 0 1 1 1 1 Amino acid permease TrkA_N PF02254.18 gi|385803348|ref|YP_005839748.1| - 2.6e-22 79.2 0.2 4e-22 78.7 0.2 1.3 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_10 PF13460.6 gi|385803348|ref|YP_005839748.1| - 4e-07 30.1 0.1 5.9e-07 29.6 0.1 1.3 1 0 0 1 1 1 1 NAD(P)H-binding TrkA_C PF02080.21 gi|385803348|ref|YP_005839748.1| - 4.4e-06 26.4 0.1 1.6e-05 24.6 0.0 2.0 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|385803348|ref|YP_005839748.1| - 4.9e-05 23.7 0.0 8.5e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Pyr_redox PF00070.27 gi|385803348|ref|YP_005839748.1| - 0.00011 22.7 0.0 0.00035 21.1 0.0 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|385803348|ref|YP_005839748.1| - 0.0002 21.3 0.0 0.00035 20.5 0.0 1.6 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|385803348|ref|YP_005839748.1| - 0.0004 19.8 0.0 0.00069 19.0 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|385803348|ref|YP_005839748.1| - 0.00043 19.6 0.0 0.00075 18.8 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|385803348|ref|YP_005839748.1| - 0.00048 19.8 0.0 0.00085 19.0 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.19 gi|385803348|ref|YP_005839748.1| - 0.0005 19.4 0.0 0.00087 18.6 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain adh_short PF00106.25 gi|385803348|ref|YP_005839748.1| - 0.0024 17.4 0.0 0.0043 16.5 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase XdhC_C PF13478.6 gi|385803348|ref|YP_005839748.1| - 0.0024 18.4 0.0 0.0059 17.1 0.0 1.7 1 1 0 1 1 1 1 XdhC Rossmann domain NmrA PF05368.13 gi|385803348|ref|YP_005839748.1| - 0.0026 17.4 0.0 0.0037 16.8 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.21 gi|385803348|ref|YP_005839748.1| - 0.012 15.1 0.1 0.016 14.7 0.1 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 gi|385803348|ref|YP_005839748.1| - 0.013 15.8 0.1 0.027 14.7 0.1 1.5 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|385803348|ref|YP_005839748.1| - 0.018 15.6 0.0 0.035 14.7 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|385803348|ref|YP_005839748.1| - 0.028 14.5 0.0 0.064 13.3 0.0 1.5 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|385803348|ref|YP_005839748.1| - 0.062 12.9 0.1 0.14 11.7 0.0 1.6 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LpxI_N PF17930.1 gi|385803348|ref|YP_005839748.1| - 0.12 12.3 0.1 0.59 10.0 0.0 2.0 2 1 0 2 2 2 0 LpxI N-terminal domain AdoHcyase_NAD PF00670.21 gi|385803348|ref|YP_005839748.1| - 0.14 12.2 0.0 0.63 10.1 0.0 1.9 1 1 1 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.15 gi|385803348|ref|YP_005839748.1| - 0.15 12.3 0.0 0.21 11.8 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 gi|385803349|ref|YP_005839749.1| - 4.4e-40 136.6 10.2 2.2e-20 73.1 1.7 3.0 2 1 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 gi|385803349|ref|YP_005839749.1| - 2.8e-26 91.1 0.1 1.3e-11 44.1 0.0 3.6 4 0 0 4 4 4 2 TrkA-C domain NAD_binding_7 PF13241.6 gi|385803349|ref|YP_005839749.1| - 0.00022 21.6 1.2 0.00063 20.2 0.2 2.2 2 0 0 2 2 2 1 Putative NAD(P)-binding Castor_Poll_mid PF06241.12 gi|385803349|ref|YP_005839749.1| - 0.00073 19.5 0.0 0.41 10.6 0.0 2.8 3 0 0 3 3 3 2 Castor and Pollux, part of voltage-gated ion channel Sacchrp_dh_NADP PF03435.18 gi|385803349|ref|YP_005839749.1| - 0.02 15.2 2.8 0.12 12.6 0.1 3.0 2 1 1 3 3 3 0 Saccharopine dehydrogenase NADP binding domain FAD_binding_3 PF01494.19 gi|385803349|ref|YP_005839749.1| - 0.029 13.6 0.1 0.042 13.1 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain Fibritin_C PF07921.12 gi|385803349|ref|YP_005839749.1| - 0.4 10.8 2.1 1.8 8.8 0.3 2.7 2 1 1 3 3 3 0 Fibritin C-terminal region DUF2892 PF11127.8 gi|385803350|ref|YP_005839750.1| - 6.5e-08 32.5 0.7 6.9e-08 32.4 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) Nramp PF01566.18 gi|385803351|ref|YP_005839751.1| - 1.6e-61 208.3 33.7 1.6e-61 208.3 33.7 1.8 2 0 0 2 2 2 1 Natural resistance-associated macrophage protein CitMHS PF03600.16 gi|385803352|ref|YP_005839752.1| - 7.2e-56 189.6 9.3 8.9e-56 189.3 8.1 1.7 1 1 0 1 1 1 1 Citrate transporter Na_sulph_symp PF00939.19 gi|385803352|ref|YP_005839752.1| - 1.9e-25 89.9 34.9 1.5e-16 60.5 13.6 3.0 2 1 0 3 3 3 3 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.21 gi|385803352|ref|YP_005839752.1| - 8e-19 67.2 0.5 4.1e-09 36.2 0.1 2.5 2 0 0 2 2 2 2 TrkA-C domain DUF2371 PF10177.9 gi|385803352|ref|YP_005839752.1| - 0.061 13.5 0.4 4.1 7.6 0.0 3.0 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) Erv26 PF04148.13 gi|385803352|ref|YP_005839752.1| - 0.38 10.6 5.4 6.4 6.5 0.1 2.4 2 0 0 2 2 2 0 Transmembrane adaptor Erv26 TrkA_N PF02254.18 gi|385803353|ref|YP_005839753.1| - 2.1e-24 86.0 0.6 2.1e-24 86.0 0.6 1.7 2 1 0 2 2 2 1 TrkA-N domain NAD_binding_7 PF13241.6 gi|385803353|ref|YP_005839753.1| - 2.7e-08 34.2 0.1 5.1e-08 33.3 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_C PF02080.21 gi|385803353|ref|YP_005839753.1| - 3.1e-06 26.9 0.6 1.1e-05 25.1 0.1 2.1 2 0 0 2 2 2 1 TrkA-C domain FAD_binding_2 PF00890.24 gi|385803353|ref|YP_005839753.1| - 4.3e-05 22.8 0.2 4.7e-05 22.6 0.2 1.1 1 0 0 1 1 1 1 FAD binding domain adh_short PF00106.25 gi|385803353|ref|YP_005839753.1| - 8.1e-05 22.2 0.1 0.00011 21.7 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase DAO PF01266.24 gi|385803353|ref|YP_005839753.1| - 9.6e-05 22.1 0.4 0.00011 21.9 0.4 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|385803353|ref|YP_005839753.1| - 0.0002 20.7 0.4 0.0018 17.6 0.1 2.1 1 1 1 2 2 2 1 FAD binding domain LpxI_N PF17930.1 gi|385803353|ref|YP_005839753.1| - 0.0002 21.2 0.1 0.00039 20.3 0.1 1.5 1 0 0 1 1 1 1 LpxI N-terminal domain NAD_binding_10 PF13460.6 gi|385803353|ref|YP_005839753.1| - 0.0005 20.0 0.3 0.00063 19.7 0.3 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Pyr_redox PF00070.27 gi|385803353|ref|YP_005839753.1| - 0.00056 20.4 0.2 0.0012 19.4 0.2 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|385803353|ref|YP_005839753.1| - 0.0006 19.1 0.0 0.0007 18.9 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.17 gi|385803353|ref|YP_005839753.1| - 0.0016 19.0 0.5 0.034 14.7 0.2 2.7 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|385803353|ref|YP_005839753.1| - 0.0055 16.6 0.2 0.0092 15.9 0.2 1.5 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|385803353|ref|YP_005839753.1| - 0.0058 16.1 0.0 0.0082 15.6 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family adh_short_C2 PF13561.6 gi|385803353|ref|YP_005839753.1| - 0.006 16.2 0.6 0.022 14.3 0.5 1.8 1 1 1 2 2 2 1 Enoyl-(Acyl carrier protein) reductase ApbA PF02558.16 gi|385803353|ref|YP_005839753.1| - 0.0068 16.1 0.1 0.012 15.3 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_8 PF13450.6 gi|385803353|ref|YP_005839753.1| - 0.007 16.6 0.1 0.015 15.5 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Shikimate_DH PF01488.20 gi|385803353|ref|YP_005839753.1| - 0.0083 16.2 0.1 0.014 15.5 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase XdhC_C PF13478.6 gi|385803353|ref|YP_005839753.1| - 0.015 15.8 0.9 0.1 13.1 0.1 2.1 1 1 1 2 2 2 0 XdhC Rossmann domain UDPG_MGDP_dh_N PF03721.14 gi|385803353|ref|YP_005839753.1| - 0.015 14.9 0.0 0.025 14.1 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IlvN PF07991.12 gi|385803353|ref|YP_005839753.1| - 0.019 14.6 0.0 0.028 14.0 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|385803353|ref|YP_005839753.1| - 0.032 13.6 0.0 0.051 12.9 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UPF0180 PF03698.13 gi|385803353|ref|YP_005839753.1| - 0.033 14.4 0.0 0.1 12.8 0.0 1.9 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) Sacchrp_dh_NADP PF03435.18 gi|385803353|ref|YP_005839753.1| - 0.036 14.3 0.2 0.082 13.2 0.1 1.6 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Pyr_redox_3 PF13738.6 gi|385803353|ref|YP_005839753.1| - 0.055 12.7 0.1 0.1 11.8 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|385803353|ref|YP_005839753.1| - 0.06 12.0 0.1 0.091 11.5 0.1 1.3 1 0 0 1 1 1 0 HI0933-like protein Thi4 PF01946.17 gi|385803353|ref|YP_005839753.1| - 0.065 12.5 0.0 0.094 11.9 0.0 1.4 1 0 0 1 1 1 0 Thi4 family GFO_IDH_MocA PF01408.22 gi|385803353|ref|YP_005839753.1| - 0.066 14.0 0.0 0.11 13.3 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_N PF00044.24 gi|385803353|ref|YP_005839753.1| - 0.16 12.3 0.0 0.5 10.7 0.0 1.8 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Trp_halogenase PF04820.14 gi|385803353|ref|YP_005839753.1| - 0.16 10.8 0.1 0.21 10.4 0.1 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Usp PF00582.26 gi|385803354|ref|YP_005839754.1| - 1.7e-33 116.1 0.1 1.9e-33 116.0 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family Lar_N PF09861.9 gi|385803355|ref|YP_005839755.1| - 5.7e-05 22.4 0.0 9.2e-05 21.7 0.0 1.3 1 0 0 1 1 1 1 Lactate racemase N-terminal domain DUF362 PF04015.12 gi|385803355|ref|YP_005839755.1| - 0.00062 20.1 0.0 0.001 19.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Usp PF00582.26 gi|385803357|ref|YP_005839757.1| - 5.6e-60 201.9 5.2 2.1e-30 106.1 0.1 2.0 2 0 0 2 2 2 2 Universal stress protein family FR47 PF08445.10 gi|385803357|ref|YP_005839757.1| - 0.097 12.7 0.0 0.3 11.1 0.0 1.9 1 1 0 1 1 1 0 FR47-like protein DUF21 PF01595.20 gi|385803358|ref|YP_005839758.1| - 2.5e-47 160.8 0.2 3.6e-47 160.3 0.2 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|385803358|ref|YP_005839758.1| - 6.7e-20 70.9 1.0 6.7e-20 70.9 1.0 2.0 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 gi|385803358|ref|YP_005839758.1| - 9.6e-09 35.6 3.7 0.00032 21.1 0.9 3.2 3 0 0 3 3 3 2 CBS domain Rrp44_S1 PF17215.3 gi|385803358|ref|YP_005839758.1| - 0.0013 18.7 1.3 1.4 8.9 0.2 3.3 3 0 0 3 3 3 2 S1 domain PHB_acc_N PF07879.11 gi|385803358|ref|YP_005839758.1| - 0.033 14.3 0.9 5.4 7.2 0.0 2.8 2 0 0 2 2 2 0 PHB/PHA accumulation regulator DNA-binding domain NodS PF05401.11 gi|385803358|ref|YP_005839758.1| - 0.1 12.2 0.1 0.18 11.4 0.1 1.4 1 0 0 1 1 1 0 Nodulation protein S (NodS) GerE PF00196.19 gi|385803359|ref|YP_005839759.1| - 1.7e-07 30.7 0.0 2.6e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|385803359|ref|YP_005839759.1| - 0.013 15.1 0.0 0.029 14.0 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 DUF4379 PF14311.6 gi|385803359|ref|YP_005839759.1| - 0.029 14.7 8.2 0.14 12.5 1.8 2.4 1 1 1 2 2 2 0 Probable Zinc-ribbon domain HTH_38 PF13936.6 gi|385803359|ref|YP_005839759.1| - 0.063 13.1 0.1 0.2 11.4 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|385803359|ref|YP_005839759.1| - 0.15 12.1 0.0 0.39 10.7 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Rubredoxin PF00301.20 gi|385803359|ref|YP_005839759.1| - 0.25 11.4 3.2 11 6.1 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin OrfB_Zn_ribbon PF07282.11 gi|385803359|ref|YP_005839759.1| - 1.4 8.8 5.2 2.3 8.2 3.5 2.1 2 1 1 3 3 3 0 Putative transposase DNA-binding domain AhpC-TSA PF00578.21 gi|385803361|ref|YP_005839761.1| - 1.3e-25 89.7 0.0 1.7e-25 89.3 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|385803361|ref|YP_005839761.1| - 6.8e-13 48.6 0.0 7.6e-13 48.4 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|385803361|ref|YP_005839761.1| - 5.3e-06 26.5 0.0 6.1e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme Invasin_D3 PF09134.10 gi|385803362|ref|YP_005839762.1| - 0.0076 16.5 1.6 2.1 8.7 1.3 2.5 1 1 1 2 2 2 2 Invasin, domain 3 RtcB PF01139.17 gi|385803363|ref|YP_005839763.1| - 9.4e-58 196.3 0.0 1.7e-29 103.3 0.0 2.1 2 0 0 2 2 2 2 tRNA-splicing ligase RtcB DUF3671 PF12420.8 gi|385803364|ref|YP_005839764.1| - 0.7 10.0 1.8 3.6 7.7 1.7 2.1 2 0 0 2 2 2 0 Protein of unknown function MRAP PF15183.6 gi|385803365|ref|YP_005839765.1| - 0.099 12.6 0.1 0.11 12.5 0.1 1.1 1 0 0 1 1 1 0 Melanocortin-2 receptor accessory protein family adh_short PF00106.25 gi|385803366|ref|YP_005839766.1| - 2.4e-59 200.1 0.8 3.1e-59 199.7 0.8 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|385803366|ref|YP_005839766.1| - 9.7e-48 162.7 0.6 1.2e-47 162.4 0.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|385803366|ref|YP_005839766.1| - 2.6e-17 63.3 0.3 3.2e-17 63.0 0.3 1.1 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|385803366|ref|YP_005839766.1| - 8.8e-07 29.0 0.8 1.2e-06 28.6 0.8 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|385803366|ref|YP_005839766.1| - 8.1e-05 22.2 0.4 0.0004 19.9 0.4 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.19 gi|385803366|ref|YP_005839766.1| - 0.00037 19.9 0.1 0.00071 18.9 0.1 1.5 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain OpuAC PF04069.12 gi|385803366|ref|YP_005839766.1| - 0.03 13.9 0.0 0.048 13.2 0.0 1.3 1 0 0 1 1 1 0 Substrate binding domain of ABC-type glycine betaine transport system 2-Hacid_dh_C PF02826.19 gi|385803366|ref|YP_005839766.1| - 0.04 13.3 0.0 0.065 12.6 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|385803366|ref|YP_005839766.1| - 0.049 13.7 0.4 0.12 12.5 0.3 1.7 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase HEM4 PF02602.15 gi|385803366|ref|YP_005839766.1| - 0.057 12.8 0.0 0.12 11.7 0.0 1.6 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD ABC_tran PF00005.27 gi|385803367|ref|YP_005839767.1| - 6.2e-32 111.0 0.1 1.6e-31 109.7 0.0 1.7 2 0 0 2 2 1 1 ABC transporter ABC_membrane PF00664.23 gi|385803367|ref|YP_005839767.1| - 8.2e-29 101.1 9.3 1.2e-28 100.6 9.3 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 gi|385803367|ref|YP_005839767.1| - 4.1e-06 26.4 1.5 9.4e-05 21.9 1.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_24 PF13479.6 gi|385803367|ref|YP_005839767.1| - 4.3e-05 23.3 0.0 9.8e-05 22.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|385803367|ref|YP_005839767.1| - 0.0011 18.9 0.5 0.013 15.3 0.1 2.6 2 1 0 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|385803367|ref|YP_005839767.1| - 0.0018 18.7 0.2 0.0061 17.0 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|385803367|ref|YP_005839767.1| - 0.0077 16.0 0.1 0.034 13.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain RNA_helicase PF00910.22 gi|385803367|ref|YP_005839767.1| - 0.0087 16.4 0.0 0.028 14.8 0.0 1.9 2 0 0 2 2 1 1 RNA helicase AAA_22 PF13401.6 gi|385803367|ref|YP_005839767.1| - 0.01 16.1 0.1 0.059 13.7 0.1 2.3 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|385803367|ref|YP_005839767.1| - 0.042 13.9 0.0 0.18 11.9 0.0 2.1 2 0 0 2 2 2 0 50S ribosome-binding GTPase PRK PF00485.18 gi|385803367|ref|YP_005839767.1| - 0.049 13.4 0.1 0.2 11.4 0.0 2.0 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.6 gi|385803367|ref|YP_005839767.1| - 0.049 13.8 0.0 0.11 12.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|385803367|ref|YP_005839767.1| - 0.066 12.5 1.8 0.1 11.8 0.0 2.2 3 0 0 3 3 3 0 Zeta toxin RsgA_GTPase PF03193.16 gi|385803367|ref|YP_005839767.1| - 0.075 12.9 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase MobB PF03205.14 gi|385803367|ref|YP_005839767.1| - 0.079 12.9 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF87 PF01935.17 gi|385803367|ref|YP_005839767.1| - 0.084 13.0 0.7 0.31 11.1 0.7 2.1 1 1 0 1 1 1 0 Helicase HerA, central domain AAA_29 PF13555.6 gi|385803367|ref|YP_005839767.1| - 0.1 12.4 0.0 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|385803367|ref|YP_005839767.1| - 0.15 12.5 0.2 2.1 8.7 0.2 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) N6_N4_Mtase PF01555.18 gi|385803368|ref|YP_005839768.1| - 1.3e-41 142.8 2.0 1.5e-41 142.6 2.0 1.0 1 0 0 1 1 1 1 DNA methylase Methyltransf_25 PF13649.6 gi|385803368|ref|YP_005839768.1| - 0.01 16.5 0.0 0.44 11.3 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|385803368|ref|YP_005839768.1| - 0.021 14.6 0.0 0.27 11.0 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|385803368|ref|YP_005839768.1| - 0.19 12.4 0.0 17 6.2 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain RNA_pol_Rpb1_3 PF04983.18 gi|385803369|ref|YP_005839769.1| - 0.071 13.0 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 3 FMP23 PF17315.2 gi|385803369|ref|YP_005839769.1| - 0.14 12.4 3.6 0.16 12.1 2.4 1.7 1 1 0 1 1 1 0 Found in mitochondrial proteome O-antigen_lig PF13425.6 gi|385803369|ref|YP_005839769.1| - 1.1 8.0 5.6 1.6 7.4 5.6 1.2 1 0 0 1 1 1 0 O-antigen ligase like membrane protein Aldedh PF00171.22 gi|385803370|ref|YP_005839770.1| - 3.1e-171 569.9 0.0 3.6e-171 569.7 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DDE_5 PF13546.6 gi|385803371|ref|YP_005839771.1| - 3.2e-26 92.3 0.0 4.7e-26 91.7 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|385803371|ref|YP_005839771.1| - 8.1e-16 58.3 0.1 2.1e-15 56.9 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|385803371|ref|YP_005839771.1| - 0.00013 21.3 0.5 0.00055 19.3 0.5 1.8 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|385803371|ref|YP_005839771.1| - 0.016 13.5 0.0 0.022 13.0 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 DDE_Tnp_1_6 PF13751.6 gi|385803371|ref|YP_005839771.1| - 0.14 12.4 0.0 0.31 11.3 0.0 1.6 1 0 0 1 1 1 0 Transposase DDE domain DUF2892 PF11127.8 gi|385803372|ref|YP_005839772.1| - 8.7e-17 60.9 1.9 1.1e-16 60.7 1.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) DAP10 PF07213.11 gi|385803372|ref|YP_005839772.1| - 0.053 13.5 1.4 0.071 13.1 1.4 1.2 1 0 0 1 1 1 0 DAP10 membrane protein SfsA PF03749.13 gi|385803373|ref|YP_005839773.1| - 1.9e-38 131.5 0.0 2.3e-38 131.2 0.0 1.1 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|385803373|ref|YP_005839773.1| - 3.3e-13 49.6 0.0 7.1e-13 48.5 0.0 1.6 1 0 0 1 1 1 1 SfsA N-terminal OB domain NMT1_2 PF13379.6 gi|385803374|ref|YP_005839774.1| - 8.4e-07 28.9 0.0 1.2e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|385803374|ref|YP_005839774.1| - 4.5e-06 26.8 0.0 9.3e-06 25.7 0.0 1.5 2 0 0 2 2 2 1 NMT1/THI5 like VitK2_biosynth PF02621.14 gi|385803374|ref|YP_005839774.1| - 0.00066 19.3 0.0 0.0041 16.7 0.0 2.1 1 1 0 1 1 1 1 Menaquinone biosynthesis Phosphonate-bd PF12974.7 gi|385803374|ref|YP_005839774.1| - 0.012 15.2 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 gi|385803374|ref|YP_005839774.1| - 0.036 13.5 0.0 0.062 12.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 TAT_signal PF10518.9 gi|385803374|ref|YP_005839774.1| - 0.084 12.7 0.0 0.23 11.4 0.0 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|385803375|ref|YP_005839775.1| - 4.4e-17 62.4 12.8 4.4e-17 62.4 12.8 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|385803376|ref|YP_005839776.1| - 5.9e-32 111.1 0.0 1.8e-31 109.5 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|385803376|ref|YP_005839776.1| - 1.2e-05 25.3 0.2 0.01 15.7 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385803376|ref|YP_005839776.1| - 0.00051 19.6 0.2 0.23 10.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|385803376|ref|YP_005839776.1| - 0.002 18.1 0.0 0.0035 17.3 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|385803376|ref|YP_005839776.1| - 0.0053 16.5 0.1 0.012 15.3 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|385803376|ref|YP_005839776.1| - 0.0065 16.9 0.1 0.035 14.5 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|385803376|ref|YP_005839776.1| - 0.011 15.7 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_23 PF13476.6 gi|385803376|ref|YP_005839776.1| - 0.016 15.8 0.2 0.022 15.3 0.2 1.4 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|385803376|ref|YP_005839776.1| - 0.02 14.1 0.1 0.035 13.3 0.1 1.6 1 1 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.6 gi|385803376|ref|YP_005839776.1| - 0.024 14.8 0.5 0.13 12.4 0.5 2.0 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|385803376|ref|YP_005839776.1| - 0.03 14.0 0.0 0.03 14.0 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain SbcCD_C PF13558.6 gi|385803376|ref|YP_005839776.1| - 0.032 14.5 0.2 0.31 11.3 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 gi|385803376|ref|YP_005839776.1| - 0.037 14.4 0.2 0.05 14.0 0.2 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|385803376|ref|YP_005839776.1| - 0.043 13.4 0.2 0.23 11.0 0.0 2.1 2 1 1 3 3 3 0 AAA domain AAA_7 PF12775.7 gi|385803376|ref|YP_005839776.1| - 0.074 12.6 0.1 0.13 11.7 0.1 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_22 PF13401.6 gi|385803376|ref|YP_005839776.1| - 0.081 13.2 0.3 0.15 12.4 0.3 1.7 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|385803376|ref|YP_005839776.1| - 0.088 12.2 0.1 0.55 9.6 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|385803376|ref|YP_005839776.1| - 0.14 12.7 0.0 0.26 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|385803376|ref|YP_005839776.1| - 0.17 10.9 0.1 0.27 10.2 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_14 PF13173.6 gi|385803376|ref|YP_005839776.1| - 0.18 11.9 0.0 0.96 9.5 0.0 2.1 2 1 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|385803377|ref|YP_005839777.1| - 1.4e-14 54.3 18.4 1.4e-14 54.3 18.4 1.9 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2678 PF10856.8 gi|385803377|ref|YP_005839777.1| - 0.19 11.7 0.1 0.19 11.7 0.1 2.8 2 1 0 3 3 3 0 Protein of unknown function (DUF2678) DUF5379 PF17350.2 gi|385803377|ref|YP_005839777.1| - 4.6 7.6 10.9 4.7 7.5 1.0 3.5 3 1 0 3 3 3 0 Family of unknown function (DUF5379) AIRC PF00731.20 gi|385803378|ref|YP_005839778.1| - 2.1e-14 53.4 3.2 3.4e-14 52.6 3.2 1.4 1 0 0 1 1 1 1 AIR carboxylase XdhC_CoxI PF02625.16 gi|385803378|ref|YP_005839778.1| - 5.4 7.3 10.0 1.9 8.7 0.3 3.5 4 0 0 4 4 4 0 XdhC and CoxI family QRPTase_C PF01729.19 gi|385803379|ref|YP_005839779.1| - 1.8e-20 73.4 0.0 2.5e-20 72.9 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|385803379|ref|YP_005839779.1| - 0.00013 21.9 0.0 0.0011 19.0 0.0 2.5 2 1 1 3 3 3 1 Quinolinate phosphoribosyl transferase, N-terminal domain Sacchrp_dh_NADP PF03435.18 gi|385803380|ref|YP_005839780.1| - 1.7e-09 38.0 0.0 3.3e-09 37.1 0.0 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|385803380|ref|YP_005839780.1| - 0.0032 17.4 0.0 0.0053 16.7 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|385803380|ref|YP_005839780.1| - 0.014 14.9 0.0 0.02 14.4 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family 5HT_transport_N PF03491.13 gi|385803380|ref|YP_005839780.1| - 0.017 15.3 0.1 0.052 13.7 0.0 1.9 2 0 0 2 2 2 0 Serotonin (5-HT) neurotransmitter transporter, N-terminus GDP_Man_Dehyd PF16363.5 gi|385803380|ref|YP_005839780.1| - 0.024 14.0 0.0 0.034 13.5 0.0 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|385803380|ref|YP_005839780.1| - 0.11 11.5 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|385803380|ref|YP_005839780.1| - 0.11 11.5 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein NmrA PF05368.13 gi|385803380|ref|YP_005839780.1| - 0.12 11.9 0.0 0.34 10.4 0.0 1.7 1 1 0 1 1 1 0 NmrA-like family Helicase_C_2 PF13307.6 gi|385803381|ref|YP_005839781.1| - 1.1e-25 90.8 0.0 2e-25 89.9 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|385803381|ref|YP_005839781.1| - 5.4e-13 48.9 0.1 2.9e-11 43.3 0.0 2.3 2 0 0 2 2 2 1 DEAD_2 DEAD PF00270.29 gi|385803381|ref|YP_005839781.1| - 2.9e-05 23.9 0.4 0.14 11.9 0.1 2.7 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.15 gi|385803381|ref|YP_005839781.1| - 7e-05 22.9 0.0 0.072 13.1 0.0 2.4 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit DUF2075 PF09848.9 gi|385803381|ref|YP_005839781.1| - 0.014 14.6 0.0 1 8.5 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|385803381|ref|YP_005839781.1| - 0.061 13.0 0.2 0.92 9.2 0.1 2.4 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|385803381|ref|YP_005839781.1| - 0.12 11.8 0.0 0.35 10.3 0.0 1.7 1 0 0 1 1 1 0 PhoH-like protein Metallophos PF00149.28 gi|385803382|ref|YP_005839782.1| - 2.1e-05 25.1 0.4 2.4e-05 24.9 0.4 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|385803382|ref|YP_005839782.1| - 0.00029 21.1 0.1 0.00038 20.7 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain z-alpha PF02295.17 gi|385803383|ref|YP_005839783.1| - 0.0077 16.3 0.0 0.05 13.7 0.0 1.9 1 1 0 1 1 1 1 Adenosine deaminase z-alpha domain HTH_12 PF08461.10 gi|385803383|ref|YP_005839783.1| - 0.013 15.5 0.1 0.014 15.3 0.1 1.2 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HARE-HTH PF05066.13 gi|385803383|ref|YP_005839783.1| - 0.087 13.2 0.0 0.095 13.1 0.0 1.3 1 0 0 1 1 1 0 HB1, ASXL, restriction endonuclease HTH domain Beta-Casp PF10996.8 gi|385803384|ref|YP_005839784.1| - 1.2e-15 57.7 0.0 2.8e-15 56.6 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|385803384|ref|YP_005839784.1| - 5.1e-12 45.5 0.0 1.1e-11 44.5 0.0 1.6 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|385803384|ref|YP_005839784.1| - 2.6e-11 43.3 0.1 6.4e-11 42.0 0.1 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|385803384|ref|YP_005839784.1| - 2.4e-10 40.7 2.8 3.8e-09 36.9 0.9 2.7 3 0 0 3 3 3 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|385803384|ref|YP_005839784.1| - 1e-08 35.0 0.5 5.9e-08 32.5 0.3 2.3 2 0 0 2 2 2 1 Beta-lactamase superfamily domain PDEase_II PF02112.15 gi|385803384|ref|YP_005839784.1| - 0.07 12.2 1.0 0.13 11.4 0.2 1.7 2 0 0 2 2 2 0 cAMP phosphodiesterases class-II DUF1640 PF07798.11 gi|385803384|ref|YP_005839784.1| - 0.31 11.1 0.1 0.31 11.1 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1640) DUF3244 PF11589.8 gi|385803385|ref|YP_005839785.1| - 0.028 14.5 0.3 0.036 14.2 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3244) CHU_C PF13585.6 gi|385803385|ref|YP_005839785.1| - 0.035 14.2 0.0 0.048 13.7 0.0 1.3 1 0 0 1 1 1 0 C-terminal domain of CHU protein family fn3 PF00041.21 gi|385803385|ref|YP_005839785.1| - 0.062 13.7 1.6 0.091 13.1 0.7 1.7 1 1 1 2 2 2 0 Fibronectin type III domain FlgD_ig PF13860.6 gi|385803385|ref|YP_005839785.1| - 0.07 13.0 0.2 0.24 11.3 0.1 2.1 1 1 1 2 2 2 0 FlgD Ig-like domain I-set PF07679.16 gi|385803385|ref|YP_005839785.1| - 0.47 10.6 2.5 1.2 9.3 0.4 2.1 2 0 0 2 2 2 0 Immunoglobulin I-set domain adh_short PF00106.25 gi|385803387|ref|YP_005839787.1| - 5.1e-48 163.1 0.3 6.2e-48 162.9 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|385803387|ref|YP_005839787.1| - 1.6e-36 126.0 1.0 2e-36 125.8 1.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|385803387|ref|YP_005839787.1| - 1.8e-11 44.3 0.1 2.4e-11 43.9 0.1 1.1 1 0 0 1 1 1 1 KR domain Polysacc_synt_2 PF02719.15 gi|385803387|ref|YP_005839787.1| - 0.014 14.6 0.0 0.02 14.1 0.0 1.3 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein THF_DHG_CYH_C PF02882.19 gi|385803387|ref|YP_005839787.1| - 0.043 13.1 0.4 0.079 12.3 0.4 1.4 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Epimerase PF01370.21 gi|385803387|ref|YP_005839787.1| - 0.045 13.2 1.4 0.11 11.9 0.3 2.0 1 1 0 2 2 2 0 NAD dependent epimerase/dehydratase family 2-Hacid_dh_C PF02826.19 gi|385803387|ref|YP_005839787.1| - 0.05 13.0 0.1 0.08 12.3 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|385803387|ref|YP_005839787.1| - 0.14 12.2 0.2 0.4 10.7 0.2 1.7 1 1 1 2 2 2 0 Shikimate / quinate 5-dehydrogenase DFP PF04127.15 gi|385803387|ref|YP_005839787.1| - 0.26 11.1 2.3 0.61 9.9 2.3 1.6 1 1 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein HHH_5 PF14520.6 gi|385803387|ref|YP_005839787.1| - 0.29 11.8 1.0 1.9 9.2 0.2 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix domain LDcluster4 PF18306.1 gi|385803388|ref|YP_005839788.1| - 3.7e-33 114.4 3.8 4.1e-33 114.2 3.8 1.0 1 0 0 1 1 1 1 SLOG cluster4 family Lysine_decarbox PF03641.14 gi|385803388|ref|YP_005839788.1| - 4.1e-09 36.6 0.1 5.8e-09 36.1 0.1 1.2 1 0 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.15 gi|385803388|ref|YP_005839788.1| - 0.0079 15.5 0.6 0.049 12.9 0.9 1.8 1 1 1 2 2 2 1 DNA recombination-mediator protein A Nuc_deoxyrib_tr PF05014.15 gi|385803388|ref|YP_005839788.1| - 0.048 13.7 0.0 0.061 13.3 0.0 1.3 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase Fer2 PF00111.27 gi|385803389|ref|YP_005839789.1| - 7.4e-15 54.7 0.3 1.2e-14 54.0 0.3 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|385803389|ref|YP_005839789.1| - 0.026 14.6 0.1 0.072 13.1 0.1 1.6 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain GIDE PF12483.8 gi|385803390|ref|YP_005839790.1| - 6.5e-06 25.6 0.1 0.017 14.5 0.0 2.3 2 0 0 2 2 2 2 E3 Ubiquitin ligase SKG6 PF08693.10 gi|385803390|ref|YP_005839790.1| - 0.12 11.8 1.2 0.24 10.8 1.2 1.5 1 0 0 1 1 1 0 Transmembrane alpha-helix domain Polysacc_synt_2 PF02719.15 gi|385803391|ref|YP_005839791.1| - 0.16 11.1 0.0 0.18 10.9 0.0 1.0 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|385803392|ref|YP_005839792.1| - 5.7e-16 58.9 0.2 1e-15 58.1 0.2 1.4 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|385803392|ref|YP_005839792.1| - 5.1e-12 45.9 0.0 7.1e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.21 gi|385803392|ref|YP_005839792.1| - 2.2e-09 37.1 0.1 4e-09 36.3 0.0 1.6 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|385803392|ref|YP_005839792.1| - 0.0002 20.5 0.0 0.00027 20.0 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|385803392|ref|YP_005839792.1| - 0.0027 17.1 0.0 0.0043 16.5 0.0 1.3 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|385803392|ref|YP_005839792.1| - 0.0041 16.3 0.0 0.014 14.6 0.0 1.8 2 0 0 2 2 2 1 Male sterility protein Semialdhyde_dh PF01118.24 gi|385803392|ref|YP_005839792.1| - 0.037 14.5 0.0 0.072 13.5 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.17 gi|385803392|ref|YP_005839792.1| - 0.078 12.1 0.0 0.16 11.1 0.0 1.5 1 0 0 1 1 1 0 RmlD substrate binding domain ApbA PF02558.16 gi|385803392|ref|YP_005839792.1| - 0.11 12.1 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DapB_N PF01113.20 gi|385803392|ref|YP_005839792.1| - 0.11 12.6 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Methyltransf_11 PF08241.12 gi|385803394|ref|YP_005839794.1| - 1.8e-14 54.2 0.1 5.4e-14 52.6 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|385803394|ref|YP_005839794.1| - 6.7e-12 45.6 0.0 9.2e-12 45.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|385803394|ref|YP_005839794.1| - 5.6e-10 39.8 0.3 0.00067 20.3 0.0 2.5 1 1 1 2 2 2 2 Methyltransferase domain Methyltransf_8 PF05148.15 gi|385803394|ref|YP_005839794.1| - 9.7e-10 38.7 0.0 1.7e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_31 PF13847.6 gi|385803394|ref|YP_005839794.1| - 1e-09 38.4 0.2 0.0017 18.1 0.1 2.5 2 1 0 2 2 2 2 Methyltransferase domain CMAS PF02353.20 gi|385803394|ref|YP_005839794.1| - 0.00017 21.0 0.1 0.0005 19.5 0.0 1.7 2 1 0 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_12 PF08242.12 gi|385803394|ref|YP_005839794.1| - 0.0003 21.5 0.1 0.012 16.3 0.1 2.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|385803394|ref|YP_005839794.1| - 0.049 13.2 0.1 0.082 12.4 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase small domain PrmA PF06325.13 gi|385803394|ref|YP_005839794.1| - 0.067 12.6 0.8 0.18 11.2 0.5 1.9 1 1 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_29 PF03141.16 gi|385803394|ref|YP_005839794.1| - 0.075 11.6 0.0 0.11 11.1 0.0 1.3 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase MetW PF07021.12 gi|385803394|ref|YP_005839794.1| - 0.18 11.4 0.0 0.28 10.7 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Radical_SAM PF04055.21 gi|385803395|ref|YP_005839795.1| - 5.8e-23 82.1 0.0 9.9e-23 81.3 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|385803395|ref|YP_005839795.1| - 1.9e-06 28.2 0.0 3.6e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|385803395|ref|YP_005839795.1| - 0.00021 21.4 0.0 0.00042 20.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Thioredoxin_3 PF13192.6 gi|385803396|ref|YP_005839796.1| - 7.5e-05 22.7 0.0 9.5e-05 22.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain AhpC-TSA PF00578.21 gi|385803397|ref|YP_005839797.1| - 4e-18 65.5 0.0 4.9e-18 65.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|385803397|ref|YP_005839797.1| - 1.1e-09 38.1 0.0 1.4e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 Redoxin UvdE PF03851.14 gi|385803398|ref|YP_005839798.1| - 6.4e-50 169.9 0.0 7.6e-50 169.7 0.0 1.0 1 0 0 1 1 1 1 UV-endonuclease UvdE AP_endonuc_2 PF01261.24 gi|385803398|ref|YP_005839798.1| - 0.00031 20.2 0.0 0.00043 19.8 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Fer2_4 PF13510.6 gi|385803399|ref|YP_005839799.1| - 0.023 14.7 2.4 0.025 14.6 2.4 1.1 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain zinc-ribbons_6 PF07191.12 gi|385803399|ref|YP_005839799.1| - 0.031 14.3 4.3 0.033 14.2 4.3 1.1 1 0 0 1 1 1 0 zinc-ribbons zf-RanBP PF00641.18 gi|385803399|ref|YP_005839799.1| - 0.11 11.8 2.9 0.52 9.7 2.9 2.0 1 1 0 1 1 1 0 Zn-finger in Ran binding protein and others DZR PF12773.7 gi|385803400|ref|YP_005839800.1| - 5.5e-05 23.1 0.5 6.1e-05 23.0 0.5 1.1 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|385803400|ref|YP_005839800.1| - 0.00026 21.1 1.0 0.00034 20.7 1.0 1.3 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|385803400|ref|YP_005839800.1| - 0.00079 19.4 0.9 0.00079 19.4 0.9 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|385803400|ref|YP_005839800.1| - 0.0027 17.4 2.5 0.0049 16.6 2.5 1.4 1 1 0 1 1 1 1 zinc-ribbon domain Prim_Zn_Ribbon PF08273.12 gi|385803400|ref|YP_005839800.1| - 0.0038 17.5 1.0 0.42 10.9 0.1 2.1 2 0 0 2 2 2 1 Zinc-binding domain of primase-helicase TackOD1 PF18551.1 gi|385803400|ref|YP_005839800.1| - 0.0047 16.6 0.3 0.0047 16.6 0.3 1.0 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 TF_Zn_Ribbon PF08271.12 gi|385803400|ref|YP_005839800.1| - 0.0052 16.3 5.2 0.37 10.4 0.6 2.1 2 0 0 2 2 2 2 TFIIB zinc-binding zf-RING_4 PF14570.6 gi|385803400|ref|YP_005839800.1| - 0.0067 16.2 0.3 0.0089 15.8 0.3 1.1 1 0 0 1 1 1 1 RING/Ubox like zinc-binding domain zinc-ribbons_6 PF07191.12 gi|385803400|ref|YP_005839800.1| - 0.013 15.4 0.4 0.016 15.2 0.4 1.1 1 0 0 1 1 1 0 zinc-ribbons zf-C3HC4_3 PF13920.6 gi|385803400|ref|YP_005839800.1| - 0.016 15.0 0.3 0.018 14.9 0.3 1.1 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF2072 PF09845.9 gi|385803400|ref|YP_005839800.1| - 0.023 14.9 2.2 0.027 14.8 2.2 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein zf-ribbon_3 PF13248.6 gi|385803400|ref|YP_005839800.1| - 0.032 13.6 2.6 0.86 9.1 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|385803400|ref|YP_005839800.1| - 0.034 14.1 2.5 2.4 8.2 0.2 2.2 1 1 1 2 2 2 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.11 gi|385803400|ref|YP_005839800.1| - 0.042 13.8 1.0 0.044 13.7 1.0 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain NRDD PF13597.6 gi|385803400|ref|YP_005839800.1| - 0.048 12.5 1.3 0.048 12.4 1.3 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DUF35_N PF12172.8 gi|385803400|ref|YP_005839800.1| - 0.051 13.5 2.4 3.2 7.7 0.3 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-TFIIB PF13453.6 gi|385803400|ref|YP_005839800.1| - 0.058 12.7 2.3 0.23 10.8 0.2 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger Rubredoxin PF00301.20 gi|385803400|ref|YP_005839800.1| - 0.071 13.1 1.0 0.095 12.7 1.0 1.3 1 1 0 1 1 1 0 Rubredoxin zf-ACC PF17848.1 gi|385803400|ref|YP_005839800.1| - 0.12 12.4 1.4 1.3 9.1 0.1 2.3 2 1 1 3 3 3 0 Acetyl-coA carboxylase zinc finger domain PhnA_Zn_Ribbon PF08274.12 gi|385803400|ref|YP_005839800.1| - 0.14 12.2 2.9 8.4 6.4 0.1 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf_UBZ PF18439.1 gi|385803400|ref|YP_005839800.1| - 0.26 10.9 2.7 4.2 7.0 0.2 2.1 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn_ribbon_recom PF13408.6 gi|385803400|ref|YP_005839800.1| - 0.6 10.7 4.7 0.94 10.0 0.7 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain DNA_RNApol_7kD PF03604.13 gi|385803400|ref|YP_005839800.1| - 0.61 9.8 6.2 1.2 8.8 6.3 1.5 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Peptidase_M28 PF04389.17 gi|385803401|ref|YP_005839801.1| - 5.6e-31 107.8 0.9 8.4e-31 107.2 0.9 1.3 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|385803401|ref|YP_005839801.1| - 1.7e-10 40.7 0.0 3.7e-10 39.7 0.0 1.6 1 0 0 1 1 1 1 PA domain Peptidase_M20 PF01546.28 gi|385803401|ref|YP_005839801.1| - 1.8e-05 24.6 0.3 5.9e-05 22.9 0.3 1.8 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.14 gi|385803401|ref|YP_005839801.1| - 0.00082 18.5 0.1 0.0013 17.8 0.1 1.3 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase CPDase PF07823.11 gi|385803402|ref|YP_005839802.1| - 3e-18 66.2 0.1 1.8e-16 60.4 0.1 2.7 1 1 0 1 1 1 1 Cyclic phosphodiesterase-like protein 2_5_RNA_ligase2 PF13563.6 gi|385803402|ref|YP_005839802.1| - 1.1e-07 31.9 0.0 3.2e-07 30.4 0.0 1.7 1 1 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.16 gi|385803402|ref|YP_005839802.1| - 0.05 13.8 0.0 0.088 13.0 0.0 1.4 1 0 0 1 1 1 0 LigT like Phosphoesterase LPP PF04728.13 gi|385803402|ref|YP_005839802.1| - 0.098 13.1 0.0 0.61 10.5 0.0 2.2 2 0 0 2 2 2 0 Lipoprotein leucine-zipper KRBA1 PF15287.6 gi|385803403|ref|YP_005839803.1| - 0.029 14.1 0.9 0.062 13.0 0.9 1.7 1 1 0 1 1 1 0 KRBA1 family repeat CARDB PF07705.11 gi|385803404|ref|YP_005839804.1| - 7.1e-12 45.5 19.0 1.3e-05 25.4 0.7 4.4 4 0 0 4 4 4 3 CARDB Transglut_C PF00927.22 gi|385803404|ref|YP_005839804.1| - 6.5e-06 26.2 0.1 0.004 17.3 0.0 4.0 4 1 0 4 4 4 1 Transglutaminase family, C-terminal ig like domain NPCBM_assoc PF10633.9 gi|385803404|ref|YP_005839804.1| - 0.00021 21.5 0.7 0.00021 21.5 0.7 5.6 5 1 0 5 5 5 2 NPCBM-associated, NEW3 domain of alpha-galactosidase Alpha_adaptinC2 PF02883.20 gi|385803404|ref|YP_005839804.1| - 0.069 13.5 2.5 0.72 10.2 0.4 3.4 4 1 0 4 4 4 0 Adaptin C-terminal domain Gryzun PF07919.12 gi|385803404|ref|YP_005839804.1| - 0.09 11.5 0.1 0.35 9.6 0.0 1.9 2 0 0 2 2 2 0 Gryzun, putative trafficking through Golgi SoxY PF13501.6 gi|385803404|ref|YP_005839804.1| - 0.44 10.8 5.2 29 4.9 0.1 3.8 3 1 1 4 4 4 0 Sulfur oxidation protein SoxY CBM60 PF16841.5 gi|385803404|ref|YP_005839804.1| - 3.3 8.2 6.4 0.7 10.4 0.3 3.0 4 0 0 4 4 4 0 Ca-dependent carbohydrate-binding module xylan-binding ABC_tran PF00005.27 gi|385803405|ref|YP_005839805.1| - 5.3e-34 117.7 0.0 7.3e-34 117.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385803405|ref|YP_005839805.1| - 6.7e-06 26.1 1.5 0.094 12.5 1.1 2.5 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|385803405|ref|YP_005839805.1| - 0.00019 21.7 0.0 0.0012 19.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|385803405|ref|YP_005839805.1| - 0.00042 20.0 0.0 0.00075 19.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|385803405|ref|YP_005839805.1| - 0.00099 19.0 0.0 0.0017 18.3 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase SMC_N PF02463.19 gi|385803405|ref|YP_005839805.1| - 0.0032 16.9 0.0 0.77 9.1 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|385803405|ref|YP_005839805.1| - 0.0053 16.5 0.3 0.02 14.6 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|385803405|ref|YP_005839805.1| - 0.0077 16.6 0.3 0.014 15.7 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|385803405|ref|YP_005839805.1| - 0.016 14.8 0.1 0.1 12.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|385803405|ref|YP_005839805.1| - 0.022 14.8 0.0 0.061 13.4 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase NTPase_1 PF03266.15 gi|385803405|ref|YP_005839805.1| - 0.022 14.6 0.1 2.5 8.0 0.0 2.2 2 0 0 2 2 2 0 NTPase IstB_IS21 PF01695.17 gi|385803405|ref|YP_005839805.1| - 0.024 14.4 0.0 0.069 12.9 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein T2SSE PF00437.20 gi|385803405|ref|YP_005839805.1| - 0.041 12.9 0.0 0.068 12.2 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.6 gi|385803405|ref|YP_005839805.1| - 0.089 13.0 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|385803405|ref|YP_005839805.1| - 0.12 12.9 0.0 0.19 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain Dynamin_N PF00350.23 gi|385803405|ref|YP_005839805.1| - 0.12 12.4 0.3 0.38 10.8 0.0 1.9 2 0 0 2 2 2 0 Dynamin family IIGP PF05049.13 gi|385803405|ref|YP_005839805.1| - 0.18 10.8 0.0 0.26 10.3 0.0 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) AAA_7 PF12775.7 gi|385803405|ref|YP_005839805.1| - 0.21 11.1 0.0 0.32 10.5 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region MacB_PCD PF12704.7 gi|385803406|ref|YP_005839806.1| - 5.6e-22 79.1 9.7 5.6e-22 79.1 9.7 2.1 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|385803406|ref|YP_005839806.1| - 6e-10 39.5 4.1 6e-10 39.5 4.1 3.0 3 0 0 3 3 3 1 FtsX-like permease family LptF_LptG PF03739.14 gi|385803406|ref|YP_005839806.1| - 1.1 8.0 13.8 0.062 12.1 3.6 2.5 2 1 0 2 2 2 0 Lipopolysaccharide export system permease LptF/LptG RPE65 PF03055.15 gi|385803407|ref|YP_005839807.1| - 5.1e-102 342.4 0.0 5.8e-102 342.3 0.0 1.0 1 0 0 1 1 1 1 Retinal pigment epithelial membrane protein PHP PF02811.19 gi|385803408|ref|YP_005839808.1| - 1.1e-05 25.8 0.1 2.7e-05 24.6 0.1 1.5 1 1 0 2 2 2 1 PHP domain PHP_C PF13263.6 gi|385803408|ref|YP_005839808.1| - 0.0016 18.2 0.0 0.006 16.3 0.0 2.0 1 0 0 1 1 1 1 PHP-associated DUF2075 PF09848.9 gi|385803409|ref|YP_005839809.1| - 1.4e-104 350.3 0.1 1.8e-104 349.9 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) ATPase PF06745.13 gi|385803409|ref|YP_005839809.1| - 1.8e-06 27.5 0.2 3.9e-06 26.4 0.2 1.5 1 0 0 1 1 1 1 KaiC ResIII PF04851.15 gi|385803409|ref|YP_005839809.1| - 3.3e-06 27.2 0.7 0.0012 18.8 0.4 3.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|385803409|ref|YP_005839809.1| - 1.6e-05 25.2 0.7 8.4e-05 22.9 0.2 2.6 2 1 0 2 2 1 1 AAA domain AAA PF00004.29 gi|385803409|ref|YP_005839809.1| - 2.1e-05 25.0 0.2 9.9e-05 22.8 0.2 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|385803409|ref|YP_005839809.1| - 3.3e-05 24.3 0.0 8e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.6 gi|385803409|ref|YP_005839809.1| - 7.4e-05 23.1 0.0 0.00017 22.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|385803409|ref|YP_005839809.1| - 0.00084 19.2 0.3 0.0022 17.8 0.1 2.0 1 1 1 2 2 2 1 AAA domain GvpD PF07088.11 gi|385803409|ref|YP_005839809.1| - 0.0015 17.3 0.0 0.0024 16.6 0.0 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_30 PF13604.6 gi|385803409|ref|YP_005839809.1| - 0.0065 16.2 0.0 0.013 15.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain NERD PF08378.11 gi|385803409|ref|YP_005839809.1| - 0.0076 16.7 0.0 0.29 11.6 0.0 2.7 2 0 0 2 2 2 1 Nuclease-related domain IstB_IS21 PF01695.17 gi|385803409|ref|YP_005839809.1| - 0.0078 16.0 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein UvrD-helicase PF00580.21 gi|385803409|ref|YP_005839809.1| - 0.013 15.1 1.5 0.02 14.4 0.0 1.9 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain TIP49 PF06068.13 gi|385803409|ref|YP_005839809.1| - 0.025 13.8 0.0 0.045 13.0 0.0 1.4 1 0 0 1 1 1 0 TIP49 P-loop domain Torsin PF06309.11 gi|385803409|ref|YP_005839809.1| - 0.026 14.6 0.0 0.091 12.9 0.0 2.0 1 0 0 1 1 1 0 Torsin AAA_7 PF12775.7 gi|385803409|ref|YP_005839809.1| - 0.027 14.0 0.1 0.1 12.1 0.0 1.9 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_14 PF13173.6 gi|385803409|ref|YP_005839809.1| - 0.038 14.0 0.3 0.89 9.6 0.3 2.7 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|385803409|ref|YP_005839809.1| - 0.044 13.5 0.0 0.12 12.1 0.0 1.9 1 1 0 1 1 1 0 Sigma-54 interaction domain RuvB_N PF05496.12 gi|385803409|ref|YP_005839809.1| - 0.059 13.1 0.2 0.38 10.5 0.0 2.3 2 1 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain T2SSE PF00437.20 gi|385803409|ref|YP_005839809.1| - 0.083 11.9 0.0 0.17 10.9 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein Sigma54_activ_2 PF14532.6 gi|385803409|ref|YP_005839809.1| - 0.096 12.8 0.0 0.31 11.2 0.0 1.8 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_33 PF13671.6 gi|385803409|ref|YP_005839809.1| - 0.1 12.7 0.0 0.28 11.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|385803409|ref|YP_005839809.1| - 0.13 11.6 0.0 0.31 10.4 0.0 1.6 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI NUDIX PF00293.28 gi|385803410|ref|YP_005839810.1| - 6.4e-19 68.3 0.1 7e-19 68.2 0.1 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|385803410|ref|YP_005839810.1| - 0.015 15.2 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 NUDIX domain Pterin_4a PF01329.19 gi|385803411|ref|YP_005839811.1| - 1.4e-25 89.2 0.6 1.7e-25 89.0 0.6 1.1 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase UvrB_inter PF17757.1 gi|385803411|ref|YP_005839811.1| - 0.14 12.4 0.1 3.9 7.7 0.1 2.1 1 1 0 1 1 1 0 UvrB interaction domain Alpha-amylase PF00128.24 gi|385803412|ref|YP_005839812.1| - 3.2e-42 145.3 0.0 4.8e-42 144.7 0.0 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Exonuc_VII_S PF02609.16 gi|385803413|ref|YP_005839813.1| - 1.6e-09 37.6 2.4 1.9e-09 37.4 2.4 1.1 1 0 0 1 1 1 1 Exonuclease VII small subunit RL10P_insert PF17777.1 gi|385803413|ref|YP_005839813.1| - 0.049 13.6 0.0 0.067 13.2 0.0 1.3 1 0 0 1 1 1 0 Insertion domain in 60S ribosomal protein L10P Exonuc_VII_L PF02601.15 gi|385803414|ref|YP_005839814.1| - 2.2e-46 158.9 1.7 3e-46 158.4 1.7 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit tRNA_anti_2 PF13742.6 gi|385803414|ref|YP_005839814.1| - 6.9e-15 55.0 0.1 1.8e-14 53.7 0.0 1.8 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain CLP_protease PF00574.23 gi|385803414|ref|YP_005839814.1| - 0.017 15.0 0.2 0.057 13.3 0.2 1.9 1 1 0 1 1 1 0 Clp protease tRNA_anti-codon PF01336.25 gi|385803414|ref|YP_005839814.1| - 0.02 14.8 0.0 0.042 13.8 0.0 1.5 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain DUF3584 PF12128.8 gi|385803414|ref|YP_005839814.1| - 0.025 12.1 5.9 0.036 11.6 5.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) PhaP_Bmeg PF09602.10 gi|385803414|ref|YP_005839814.1| - 0.12 12.3 3.6 0.1 12.5 0.7 2.2 3 0 0 3 3 3 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) DUF3848 PF12959.7 gi|385803414|ref|YP_005839814.1| - 0.19 11.8 1.7 0.18 11.9 0.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3848) LprI PF07007.12 gi|385803414|ref|YP_005839814.1| - 0.29 11.8 3.7 7 7.4 3.7 2.4 1 1 0 1 1 1 0 Lysozyme inhibitor LprI Rho_Binding PF08912.11 gi|385803414|ref|YP_005839814.1| - 2 9.3 6.4 1.5 9.7 1.0 2.5 1 1 1 2 2 2 0 Rho Binding DUF1611 PF07755.11 gi|385803415|ref|YP_005839815.1| - 2e-75 252.5 2.6 2.7e-75 252.1 2.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain DUF1611_N PF17396.2 gi|385803415|ref|YP_005839815.1| - 1.1e-29 102.5 0.0 2.1e-28 98.4 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1611_N) Rossmann-like domain AAA_26 PF13500.6 gi|385803415|ref|YP_005839815.1| - 0.017 14.9 0.2 0.91 9.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain MR_MLE_C PF13378.6 gi|385803416|ref|YP_005839816.1| - 2.1e-35 122.3 0.8 3e-35 121.8 0.8 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|385803416|ref|YP_005839816.1| - 1.7e-11 44.4 0.1 5.5e-11 42.7 0.0 1.8 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Lactamase_B_2 PF12706.7 gi|385803417|ref|YP_005839817.1| - 5.9e-18 65.1 0.1 2.7e-09 36.8 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|385803417|ref|YP_005839817.1| - 2.3e-11 44.1 0.0 3.7e-10 40.2 0.0 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|385803417|ref|YP_005839817.1| - 0.00045 20.1 0.0 0.0015 18.4 0.0 2.1 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_4 PF13691.6 gi|385803417|ref|YP_005839817.1| - 0.025 14.2 0.0 0.057 13.1 0.0 1.6 1 0 0 1 1 1 0 tRNase Z endonuclease MIT PF04212.18 gi|385803418|ref|YP_005839818.1| - 0.011 15.8 3.8 0.022 14.8 1.1 3.0 2 0 0 2 2 2 0 MIT (microtubule interacting and transport) domain TPR_11 PF13414.6 gi|385803418|ref|YP_005839818.1| - 0.57 9.9 4.5 1.5 8.5 1.3 3.2 3 0 0 3 3 3 0 TPR repeat ANAPC3 PF12895.7 gi|385803418|ref|YP_005839818.1| - 0.95 9.7 4.7 1.3 9.3 0.7 2.9 2 1 1 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 Rhodanese PF00581.20 gi|385803419|ref|YP_005839819.1| - 1.6e-24 86.5 0.0 4.3e-12 46.5 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain NESP55 PF06390.12 gi|385803420|ref|YP_005839820.1| - 0.02 14.5 3.0 0.021 14.4 3.0 1.2 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) Peptidase_S49 PF01343.18 gi|385803421|ref|YP_005839821.1| - 1.5e-41 141.9 0.0 2.3e-41 141.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S49 SDH_sah PF01972.16 gi|385803421|ref|YP_005839821.1| - 0.013 14.5 0.0 0.024 13.6 0.0 1.4 1 0 0 1 1 1 0 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|385803421|ref|YP_005839821.1| - 0.11 12.4 0.0 9.3 6.1 0.0 2.3 2 0 0 2 2 2 0 Clp protease DICT PF10069.9 gi|529167404|ref|YP_005839822.2| - 0.0029 17.4 0.0 0.005 16.6 0.0 1.4 1 0 0 1 1 1 1 Sensory domain in DIguanylate Cyclases and Two-component system zf-ribbon_3 PF13248.6 gi|385803423|ref|YP_005839823.1| - 1.3e-05 24.4 3.5 1.7e-05 24.0 3.5 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|385803423|ref|YP_005839823.1| - 0.00016 21.6 1.8 0.00019 21.4 1.8 1.1 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|385803423|ref|YP_005839823.1| - 0.00028 21.6 0.2 0.0003 21.5 0.2 1.1 1 0 0 1 1 1 1 zinc-ribbon family HypA PF01155.19 gi|385803423|ref|YP_005839823.1| - 0.0015 18.5 0.6 0.0017 18.3 0.6 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|385803423|ref|YP_005839823.1| - 0.024 14.8 5.7 0.19 11.8 5.1 2.0 1 1 1 2 2 2 0 Zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|385803423|ref|YP_005839823.1| - 0.025 14.6 0.5 0.028 14.4 0.5 1.1 1 0 0 1 1 1 0 zinc-ribbons zinc_ribbon_2 PF13240.6 gi|385803423|ref|YP_005839823.1| - 0.029 14.1 4.4 0.063 13.0 4.4 1.5 1 1 0 1 1 1 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|385803423|ref|YP_005839823.1| - 0.043 13.7 0.7 2.6 8.0 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Prok-RING_1 PF14446.6 gi|385803423|ref|YP_005839823.1| - 0.045 13.7 1.3 0.06 13.3 1.3 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zinc_ribbon_4 PF13717.6 gi|385803423|ref|YP_005839823.1| - 0.054 13.4 0.6 1.8 8.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|385803423|ref|YP_005839823.1| - 0.068 13.6 3.4 2.1 8.8 0.5 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-IS66 PF13005.7 gi|385803423|ref|YP_005839823.1| - 0.088 13.2 1.9 1.9 9.0 0.2 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Ribosomal_L37e PF01907.19 gi|385803423|ref|YP_005839823.1| - 0.14 12.3 0.5 0.21 11.8 0.5 1.3 1 1 0 1 1 1 0 Ribosomal protein L37e Zn_Tnp_IS1595 PF12760.7 gi|385803423|ref|YP_005839823.1| - 0.15 12.1 2.5 0.99 9.4 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain UPF0547 PF10571.9 gi|385803423|ref|YP_005839823.1| - 0.24 11.5 3.3 1.3 9.2 3.3 1.9 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 zf-Mss51 PF13824.6 gi|385803423|ref|YP_005839823.1| - 0.41 10.8 5.8 0.85 9.8 0.2 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 A2L_zn_ribbon PF08792.10 gi|385803423|ref|YP_005839823.1| - 0.62 9.9 4.1 8.8 6.2 4.2 2.1 1 1 0 1 1 1 0 A2L zinc ribbon domain MoCF_biosynth PF00994.24 gi|385803424|ref|YP_005839824.1| - 4.4e-32 110.7 0.3 6.9e-32 110.1 0.3 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain HAD PF12710.7 gi|385803425|ref|YP_005839825.1| - 4.2e-07 30.6 0.0 5e-05 23.8 0.0 2.2 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|385803425|ref|YP_005839825.1| - 0.013 15.8 0.0 0.055 13.7 0.0 2.0 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase DDE_5 PF13546.6 gi|385803427|ref|YP_005839827.1| - 3.2e-26 92.3 0.0 4.7e-26 91.7 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|385803427|ref|YP_005839827.1| - 8.1e-16 58.3 0.1 2.1e-15 56.9 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|385803427|ref|YP_005839827.1| - 0.00013 21.3 0.5 0.00055 19.3 0.5 1.8 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|385803427|ref|YP_005839827.1| - 0.016 13.5 0.0 0.022 13.0 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 DDE_Tnp_1_6 PF13751.6 gi|385803427|ref|YP_005839827.1| - 0.14 12.4 0.0 0.31 11.3 0.0 1.6 1 0 0 1 1 1 0 Transposase DDE domain Pro_CA PF00484.19 gi|385803428|ref|YP_005839828.1| - 2.8e-14 53.7 0.0 4.7e-14 53.0 0.0 1.4 1 0 0 1 1 1 1 Carbonic anhydrase Amidohydro_1 PF01979.20 gi|385803429|ref|YP_005839829.1| - 8.8e-47 160.1 0.6 1e-46 159.8 0.6 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|385803429|ref|YP_005839829.1| - 4.9e-25 88.9 5.8 3.1e-20 73.1 1.3 2.1 2 0 0 2 2 2 2 Amidohydrolase family UvrD_C_2 PF13538.6 gi|385803429|ref|YP_005839829.1| - 0.13 12.1 0.1 0.39 10.6 0.1 1.8 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain ABC_tran PF00005.27 gi|385803430|ref|YP_005839830.1| - 7.8e-46 156.0 0.1 1.9e-29 102.9 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|385803430|ref|YP_005839830.1| - 3.8e-12 46.6 1.5 1.3e-05 25.2 0.1 2.6 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|385803430|ref|YP_005839830.1| - 0.00073 19.3 0.5 0.27 10.9 0.0 2.2 1 1 0 2 2 2 2 AAA ATPase domain Bac_DnaA PF00308.18 gi|385803430|ref|YP_005839830.1| - 0.0018 18.2 0.2 0.0043 16.9 0.2 1.6 1 0 0 1 1 1 1 Bacterial dnaA protein SMC_N PF02463.19 gi|385803430|ref|YP_005839830.1| - 0.0048 16.4 0.6 2.1 7.7 0.1 2.5 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|385803430|ref|YP_005839830.1| - 0.012 15.6 4.0 0.4 10.6 0.0 3.1 2 1 1 3 3 3 0 RsgA GTPase AAA_27 PF13514.6 gi|385803430|ref|YP_005839830.1| - 0.022 14.3 0.0 0.09 12.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|385803430|ref|YP_005839830.1| - 0.023 14.4 0.1 0.023 14.4 0.1 2.2 3 0 0 3 3 3 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|385803430|ref|YP_005839830.1| - 0.027 14.7 0.1 9.8 6.5 0.0 2.5 2 0 0 2 2 2 0 AAA domain Roc PF08477.13 gi|385803430|ref|YP_005839830.1| - 0.044 14.0 0.0 10 6.4 0.0 2.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_30 PF13604.6 gi|385803430|ref|YP_005839830.1| - 0.091 12.5 0.0 1 9.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|385803430|ref|YP_005839830.1| - 0.099 13.1 0.0 0.25 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain Gtr1_RagA PF04670.12 gi|385803430|ref|YP_005839830.1| - 0.11 11.8 0.0 5.2 6.4 0.0 2.2 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region BPD_transp_2 PF02653.16 gi|385803431|ref|YP_005839831.1| - 1.1e-33 116.5 34.4 1.1e-33 116.5 34.4 1.6 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|385803432|ref|YP_005839832.1| - 3.4e-39 134.6 30.5 4.6e-39 134.2 30.4 1.2 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component PRA1 PF03208.19 gi|385803432|ref|YP_005839832.1| - 8.6 6.0 13.1 5.9 6.5 2.1 3.4 2 1 1 3 3 3 0 PRA1 family protein Bmp PF02608.14 gi|385803433|ref|YP_005839833.1| - 1.7e-42 145.5 0.0 2.1e-42 145.2 0.0 1.0 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like DUF4400 PF14348.6 gi|385803433|ref|YP_005839833.1| - 0.00047 19.7 0.0 0.0011 18.5 0.0 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4400) Fer2_2 PF01799.20 gi|385803434|ref|YP_005839834.1| - 9.6e-27 92.8 0.3 2.2e-26 91.7 0.0 1.7 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2_3 PF13085.6 gi|385803434|ref|YP_005839834.1| - 7.3e-06 26.0 0.1 1.2e-05 25.3 0.1 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2 PF00111.27 gi|385803434|ref|YP_005839834.1| - 5.1e-05 23.1 0.5 5.1e-05 23.1 0.5 1.8 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Aminoglyc_resit PF10706.9 gi|385803434|ref|YP_005839834.1| - 0.11 12.2 0.1 0.77 9.5 0.1 1.9 1 1 1 2 2 2 0 Aminoglycoside-2''-adenylyltransferase Ald_Xan_dh_C2 PF02738.18 gi|385803435|ref|YP_005839835.1| - 2.8e-150 501.4 0.1 3.4e-150 501.1 0.1 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|385803435|ref|YP_005839835.1| - 8.7e-21 74.4 0.0 2.8e-20 72.7 0.0 1.9 1 1 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FAD_binding_5 PF00941.21 gi|385803436|ref|YP_005839836.1| - 8.5e-43 146.0 0.0 1.2e-42 145.6 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 gi|385803436|ref|YP_005839836.1| - 5.8e-11 42.5 0.1 1e-10 41.7 0.1 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Xan_ur_permease PF00860.20 gi|385803437|ref|YP_005839837.1| - 3.2e-92 309.2 45.0 3.2e-92 309.2 45.0 1.5 2 0 0 2 2 2 1 Permease family TraQ PF09679.10 gi|385803437|ref|YP_005839837.1| - 0.12 12.3 0.8 0.55 10.2 0.8 2.1 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin chaperone (TraQ) OHCU_decarbox PF09349.10 gi|385803438|ref|YP_005839838.1| - 4.1e-44 150.8 2.9 4.7e-44 150.6 2.9 1.0 1 0 0 1 1 1 1 OHCU decarboxylase KAsynt_C_assoc PF16197.5 gi|385803438|ref|YP_005839838.1| - 0.076 13.5 0.4 0.47 10.9 0.1 2.2 1 1 0 2 2 2 0 Ketoacyl-synthetase C-terminal extension Uricase PF01014.18 gi|385803439|ref|YP_005839839.1| - 2.2e-31 108.8 0.0 1.3e-16 61.0 0.0 2.2 2 0 0 2 2 2 2 Uricase FolB PF02152.18 gi|385803439|ref|YP_005839839.1| - 9.1e-05 23.0 0.0 0.16 12.5 0.0 2.2 2 0 0 2 2 2 2 Dihydroneopterin aldolase Transthyretin PF00576.21 gi|385803440|ref|YP_005839840.1| - 1.7e-34 118.8 0.0 1.8e-34 118.7 0.0 1.0 1 0 0 1 1 1 1 HIUase/Transthyretin family Ribosomal_S17e PF00833.18 gi|385803440|ref|YP_005839840.1| - 0.06 13.3 0.0 0.078 12.9 0.0 1.1 1 0 0 1 1 1 0 Ribosomal S17 Peptidase_M20 PF01546.28 gi|385803441|ref|YP_005839841.1| - 4.4e-22 78.8 0.1 6.6e-22 78.2 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|385803441|ref|YP_005839841.1| - 4.9e-12 45.7 0.7 9.6e-12 44.8 0.7 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|385803441|ref|YP_005839841.1| - 4.5e-09 36.3 0.0 7.4e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 Amidohydro_1 PF01979.20 gi|385803442|ref|YP_005839842.1| - 6.2e-65 219.8 0.6 7.5e-65 219.5 0.6 1.1 1 0 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.22 gi|385803442|ref|YP_005839842.1| - 0.00032 20.2 0.0 0.00057 19.3 0.0 1.4 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_1 PF01979.20 gi|385803443|ref|YP_005839843.1| - 6e-22 78.4 0.1 1.4e-21 77.2 0.0 1.7 2 0 0 2 2 2 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|385803443|ref|YP_005839843.1| - 3.8e-16 59.6 3.9 1.1e-09 38.3 0.4 2.9 2 1 0 2 2 2 2 Amidohydrolase family DUF3830 PF12903.7 gi|385803444|ref|YP_005839844.1| - 1.6e-42 144.6 0.0 1.8e-42 144.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3830) Pribosyltran PF00156.27 gi|385803445|ref|YP_005839845.1| - 6.7e-18 64.7 0.6 9e-18 64.3 0.6 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|385803445|ref|YP_005839845.1| - 0.0049 16.3 0.1 0.0084 15.6 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|385803445|ref|YP_005839845.1| - 0.11 12.0 0.3 0.16 11.5 0.3 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase 2-Hacid_dh_C PF02826.19 gi|385803447|ref|YP_005839847.1| - 6.8e-50 168.9 0.0 3e-48 163.5 0.0 2.2 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|385803447|ref|YP_005839847.1| - 7.7e-18 64.4 0.0 9.2e-18 64.2 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Glyco_hydro_3 PF00933.21 gi|385803448|ref|YP_005839848.1| - 0.026 13.9 0.0 0.029 13.7 0.0 1.2 1 1 0 1 1 1 0 Glycosyl hydrolase family 3 N terminal domain VWA_2 PF13519.6 gi|385803450|ref|YP_005839850.1| - 5.2e-08 33.5 0.1 1e-07 32.6 0.1 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 gi|385803450|ref|YP_005839850.1| - 1.6e-07 31.7 0.1 2e-07 31.4 0.1 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|385803450|ref|YP_005839850.1| - 0.0013 18.7 0.0 0.0036 17.3 0.0 1.7 2 1 0 2 2 2 1 von Willebrand factor type A domain vWA-TerF-like PF10138.9 gi|385803450|ref|YP_005839850.1| - 0.014 15.5 1.1 0.27 11.3 1.1 2.1 1 1 0 1 1 1 0 vWA found in TerF C terminus AHJR-like PF18743.1 gi|385803450|ref|YP_005839850.1| - 0.028 14.0 0.1 0.047 13.2 0.1 1.3 1 0 0 1 1 1 0 REase_AHJR-like DUF1194 PF06707.11 gi|385803450|ref|YP_005839850.1| - 0.14 11.4 0.1 0.14 11.4 0.1 2.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1194) DUF2207 PF09972.9 gi|385803452|ref|YP_005839852.1| - 1 8.1 3.5 1.2 7.9 3.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Nterm_IS4 PF13006.7 gi|385803454|ref|YP_005839854.1| - 0.0013 18.9 0.1 0.0016 18.6 0.1 1.2 1 0 0 1 1 1 1 Insertion element 4 transposase N-terminal DUF981 PF06168.11 gi|385803454|ref|YP_005839854.1| - 0.026 14.5 3.8 0.033 14.1 3.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF981) DUF1129 PF06570.11 gi|385803454|ref|YP_005839854.1| - 0.07 12.6 3.9 0.08 12.4 3.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF2721 PF11026.8 gi|385803454|ref|YP_005839854.1| - 5.6 6.9 11.3 4.4 7.2 1.8 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF2721) DpnI_C PF17726.1 gi|385803458|ref|YP_005839858.1| - 2.2e-15 56.5 1.4 3.1e-15 56.0 1.4 1.3 1 0 0 1 1 1 1 Dam-replacing HTH domain DUF560 PF04575.13 gi|385803458|ref|YP_005839858.1| - 0.062 12.7 1.0 0.078 12.4 1.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF560) DDE_Tnp_IS1595 PF12762.7 gi|385803461|ref|YP_005839861.1| - 4.4e-22 78.7 0.0 6.5e-22 78.2 0.0 1.3 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 gi|385803461|ref|YP_005839861.1| - 2.3e-10 40.3 4.5 4.4e-10 39.4 4.5 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.13 gi|385803461|ref|YP_005839861.1| - 7.4e-06 25.6 6.0 1.5e-05 24.7 6.0 1.5 1 0 0 1 1 1 1 InsA N-terminal domain DUF2089 PF09862.9 gi|385803461|ref|YP_005839861.1| - 0.0037 17.3 0.1 0.0072 16.3 0.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF2089) zf-Dof PF02701.15 gi|385803461|ref|YP_005839861.1| - 0.083 13.0 3.4 0.16 12.1 3.4 1.5 1 0 0 1 1 1 0 Dof domain, zinc finger CoiA PF06054.11 gi|385803461|ref|YP_005839861.1| - 0.12 11.5 0.1 0.2 10.8 0.1 1.3 1 0 0 1 1 1 0 Competence protein CoiA-like family Auxin_inducible PF02519.14 gi|385803461|ref|YP_005839861.1| - 0.14 12.3 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 Auxin responsive protein zf-ISL3 PF14690.6 gi|385803461|ref|YP_005839861.1| - 0.18 12.5 7.8 0.36 11.5 0.8 2.7 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Lar_restr_allev PF14354.6 gi|385803461|ref|YP_005839861.1| - 0.2 12.0 1.6 0.44 11.0 1.6 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar DpnI PF06044.12 gi|385803461|ref|YP_005839861.1| - 0.22 11.1 0.3 0.33 10.6 0.3 1.2 1 0 0 1 1 1 0 Dam-replacing family zinc-ribbons_6 PF07191.12 gi|385803461|ref|YP_005839861.1| - 0.22 11.5 2.8 0.42 10.6 2.8 1.4 1 0 0 1 1 1 0 zinc-ribbons AAA_23 PF13476.6 gi|385803463|ref|YP_005839863.1| - 6.8e-13 49.6 22.7 6.8e-13 49.6 22.7 3.5 1 1 1 2 2 1 1 AAA domain SMC_N PF02463.19 gi|385803463|ref|YP_005839863.1| - 8e-08 32.0 0.1 8e-08 32.0 0.1 2.4 2 1 0 2 2 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|385803463|ref|YP_005839863.1| - 3.6e-05 23.4 0.0 7.2e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|385803463|ref|YP_005839863.1| - 0.00016 21.3 0.0 0.00016 21.3 0.0 3.8 5 1 0 5 5 4 1 AAA domain Laminin_II PF06009.12 gi|385803463|ref|YP_005839863.1| - 0.0027 17.7 5.7 0.0027 17.7 5.7 3.4 2 1 2 4 4 4 1 Laminin Domain II DASH_Spc19 PF08287.11 gi|385803463|ref|YP_005839863.1| - 0.011 15.6 7.9 0.011 15.6 7.9 3.5 2 1 1 3 3 3 0 Spc19 KfrA_N PF11740.8 gi|385803463|ref|YP_005839863.1| - 0.011 16.4 1.6 0.011 16.4 1.6 3.3 2 1 1 3 3 3 0 Plasmid replication region DNA-binding N-term AAA_21 PF13304.6 gi|385803463|ref|YP_005839863.1| - 0.017 14.9 13.7 0.021 14.6 5.7 3.4 2 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|385803463|ref|YP_005839863.1| - 0.018 15.0 0.4 0.066 13.1 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase Baculo_PEP_C PF04513.12 gi|385803463|ref|YP_005839863.1| - 0.018 15.1 12.6 0.53 10.3 0.6 4.0 2 2 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Exonuc_VII_L PF02601.15 gi|385803463|ref|YP_005839863.1| - 0.048 13.2 18.6 0.1 12.1 2.4 2.5 2 0 0 2 2 2 0 Exonuclease VII, large subunit OmpH PF03938.14 gi|385803463|ref|YP_005839863.1| - 0.05 13.9 31.7 0.58 10.5 4.4 3.6 3 0 0 3 3 3 0 Outer membrane protein (OmpH-like) Fez1 PF06818.15 gi|385803463|ref|YP_005839863.1| - 0.059 13.8 31.0 0.56 10.6 15.8 2.4 2 0 0 2 2 2 0 Fez1 Ploopntkinase3 PF18751.1 gi|385803463|ref|YP_005839863.1| - 0.066 13.1 0.0 0.59 10.0 0.0 2.3 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 ABC_tran PF00005.27 gi|385803463|ref|YP_005839863.1| - 0.072 13.6 0.0 0.072 13.6 0.0 3.7 3 1 0 3 3 3 0 ABC transporter WXG100 PF06013.12 gi|385803463|ref|YP_005839863.1| - 1 9.6 7.5 2.7 8.3 0.3 4.2 3 1 0 3 3 3 0 Proteins of 100 residues with WXG Het-C PF07217.11 gi|385803463|ref|YP_005839863.1| - 1.1 7.7 14.2 2.1 6.8 1.7 2.2 2 0 0 2 2 2 0 Heterokaryon incompatibility protein Het-C Spc7 PF08317.11 gi|385803463|ref|YP_005839863.1| - 1.1 8.1 37.0 0.012 14.6 6.9 3.2 2 1 0 2 2 2 0 Spc7 kinetochore protein DUF1664 PF07889.12 gi|385803463|ref|YP_005839863.1| - 2.9 7.9 28.9 2.6 8.1 7.6 4.3 3 2 1 4 4 4 0 Protein of unknown function (DUF1664) ZYG-11_interact PF05884.12 gi|385803463|ref|YP_005839863.1| - 3.7 6.9 5.1 1.5 8.2 0.2 2.4 2 1 0 2 2 2 0 Interactor of ZYG-11 ResIII PF04851.15 gi|385803465|ref|YP_005839865.1| - 2.1e-22 79.9 1.1 4.3e-22 78.9 0.0 2.1 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|385803465|ref|YP_005839865.1| - 4.4e-11 43.1 0.2 1.1e-10 41.8 0.2 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|385803465|ref|YP_005839865.1| - 1.2e-09 38.1 0.0 1.2e-08 35.0 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C_2 PF13307.6 gi|385803465|ref|YP_005839865.1| - 0.002 18.3 0.1 0.0064 16.7 0.0 1.9 1 1 1 2 2 2 1 Helicase C-terminal domain ERCC3_RAD25_C PF16203.5 gi|385803465|ref|YP_005839865.1| - 0.032 13.4 0.1 0.054 12.7 0.1 1.3 1 0 0 1 1 1 0 ERCC3/RAD25/XPB C-terminal helicase DUF853 PF05872.12 gi|385803465|ref|YP_005839865.1| - 0.033 12.8 0.0 0.077 11.6 0.1 1.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) DUF499 PF04465.12 gi|385803466|ref|YP_005839866.1| - 1.7e-26 92.3 0.1 3e-24 84.9 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF499) zf-C2H2 PF00096.26 gi|385803466|ref|YP_005839866.1| - 0.0002 21.6 4.9 0.017 15.5 0.2 3.2 3 0 0 3 3 3 2 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|385803466|ref|YP_005839866.1| - 0.0012 19.5 5.0 1.7 9.7 0.1 3.6 3 0 0 3 3 3 2 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 gi|385803466|ref|YP_005839866.1| - 0.0022 18.2 1.5 0.26 11.6 0.2 2.5 2 0 0 2 2 2 1 Zinc-finger double-stranded RNA-binding AAA PF00004.29 gi|385803466|ref|YP_005839866.1| - 0.0084 16.5 0.3 0.072 13.5 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) zf-C2HC_2 PF13913.6 gi|385803466|ref|YP_005839866.1| - 0.018 14.9 0.6 0.038 13.9 0.6 1.5 1 0 0 1 1 1 0 zinc-finger of a C2HC-type AIG2_2 PF13772.6 gi|385803466|ref|YP_005839866.1| - 0.12 12.8 0.0 30 5.1 0.0 3.0 2 0 0 2 2 2 0 AIG2-like family zf_UBZ PF18439.1 gi|385803466|ref|YP_005839866.1| - 0.32 10.6 13.9 0.49 10.0 0.1 3.4 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger zf-C2H2_6 PF13912.6 gi|385803466|ref|YP_005839866.1| - 1.2 9.2 7.4 0.26 11.3 0.7 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger HypA PF01155.19 gi|385803466|ref|YP_005839866.1| - 4.8 7.2 13.2 27 4.8 8.5 3.3 2 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1156 PF06634.12 gi|385803468|ref|YP_005839868.1| - 0.0027 17.8 0.0 0.0069 16.5 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) N6_N4_Mtase PF01555.18 gi|385803468|ref|YP_005839868.1| - 0.034 13.8 0.0 0.28 10.9 0.0 2.3 2 1 0 2 2 2 0 DNA methylase VbhA PF18495.1 gi|385803468|ref|YP_005839868.1| - 0.05 13.5 0.8 3.2 7.7 0.1 2.7 2 0 0 2 2 2 0 Antitoxin VbhA SNF2_N PF00176.23 gi|385803469|ref|YP_005839869.1| - 3.3e-14 52.4 0.1 3e-13 49.2 0.0 2.5 3 1 0 3 3 3 1 SNF2 family N-terminal domain Helicase_C PF00271.31 gi|385803469|ref|YP_005839869.1| - 4.4e-14 52.8 0.0 1.8e-13 50.8 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain PLDc_2 PF13091.6 gi|385803469|ref|YP_005839869.1| - 1.8e-07 31.1 0.0 8.6e-07 28.9 0.0 2.2 2 0 0 2 2 2 1 PLD-like domain ResIII PF04851.15 gi|385803469|ref|YP_005839869.1| - 1.8e-05 24.8 0.0 9.8e-05 22.4 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Apolipoprotein PF01442.18 gi|385803469|ref|YP_005839869.1| - 0.57 10.0 6.7 0.25 11.2 1.8 2.9 2 1 0 2 2 2 0 Apolipoprotein A1/A4/E domain OmpH PF03938.14 gi|385803469|ref|YP_005839869.1| - 9.8 6.5 11.3 0.39 11.0 2.7 3.0 2 1 0 2 2 2 0 Outer membrane protein (OmpH-like) TF_Zn_Ribbon PF08271.12 gi|385803470|ref|YP_005839870.1| - 0.0066 15.9 0.9 0.02 14.4 0.9 1.9 1 0 0 1 1 1 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|385803470|ref|YP_005839870.1| - 0.014 15.5 1.0 0.045 13.9 1.0 1.9 1 0 0 1 1 1 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|385803470|ref|YP_005839870.1| - 0.015 15.3 0.5 0.046 13.8 0.5 1.9 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain RNR_N PF08343.10 gi|385803470|ref|YP_005839870.1| - 0.029 14.4 1.7 2.6 8.1 0.0 3.3 3 0 0 3 3 3 0 Ribonucleotide reductase N-terminal zinc_ribbon_2 PF13240.6 gi|385803470|ref|YP_005839870.1| - 6.3 6.7 9.7 7.2 6.5 0.1 3.7 4 0 0 4 4 4 0 zinc-ribbon domain Helicase_C PF00271.31 gi|385803471|ref|YP_005839871.1| - 3.6e-06 27.3 0.0 9.3e-06 26.0 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|385803471|ref|YP_005839871.1| - 0.00015 21.6 0.0 0.017 14.9 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.15 gi|385803471|ref|YP_005839871.1| - 0.11 12.5 0.1 3 7.8 0.0 2.9 3 0 0 3 3 3 0 Type III restriction enzyme, res subunit HTH_3 PF01381.22 gi|385803471|ref|YP_005839871.1| - 0.48 10.5 3.3 29 4.8 0.0 3.3 3 0 0 3 3 3 0 Helix-turn-helix Adenylsucc_synt PF00709.21 gi|385803472|ref|YP_005839872.1| - 0.04 12.9 0.1 0.064 12.2 0.1 1.3 1 0 0 1 1 1 0 Adenylosuccinate synthetase RNA_pol_A_bac PF01000.26 gi|385803473|ref|YP_005839873.1| - 0.17 12.2 0.0 0.28 11.6 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase Rpb3/RpoA insert domain PIN_2 PF10130.9 gi|385803474|ref|YP_005839874.1| - 1.6e-35 122.3 0.4 1.7e-35 122.2 0.4 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|385803474|ref|YP_005839874.1| - 1.2e-07 32.5 1.1 1.5e-07 32.2 1.1 1.1 1 0 0 1 1 1 1 PIN domain PIN PF01850.21 gi|385803474|ref|YP_005839874.1| - 0.0082 16.6 4.2 0.024 15.1 4.2 1.7 1 1 0 1 1 1 1 PIN domain Amino_oxidase PF01593.24 gi|385803475|ref|YP_005839875.1| - 0.042 13.1 0.1 0.049 12.9 0.1 1.0 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Rubredoxin PF00301.20 gi|385803476|ref|YP_005839876.1| - 0.011 15.7 0.4 4.6 7.3 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin TackOD1 PF18551.1 gi|385803476|ref|YP_005839876.1| - 0.014 15.0 0.0 0.34 10.6 0.0 2.0 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 zf_UBZ PF18439.1 gi|385803476|ref|YP_005839876.1| - 0.015 14.9 0.8 0.87 9.2 0.0 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger UPF0547 PF10571.9 gi|385803476|ref|YP_005839876.1| - 0.026 14.6 2.5 1.6 8.9 0.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-TFIIB PF13453.6 gi|385803476|ref|YP_005839876.1| - 0.026 13.9 1.0 0.88 9.0 0.1 2.4 2 1 0 2 2 2 0 Transcription factor zinc-finger HalOD2 PF18547.1 gi|385803476|ref|YP_005839876.1| - 0.03 14.2 0.1 1.4 8.9 0.0 2.1 2 0 0 2 2 2 0 Halobacterial output domain 2 Methyltransf_13 PF08421.11 gi|385803476|ref|YP_005839876.1| - 0.037 14.3 0.5 0.13 12.5 0.0 1.9 2 0 0 2 2 2 0 Putative zinc binding domain DZR PF12773.7 gi|385803476|ref|YP_005839876.1| - 0.043 13.8 0.4 0.18 11.8 0.4 1.8 1 1 0 1 1 1 0 Double zinc ribbon A2L_zn_ribbon PF08792.10 gi|385803476|ref|YP_005839876.1| - 0.046 13.4 0.7 3.5 7.5 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|385803476|ref|YP_005839876.1| - 0.054 13.6 0.4 4 7.6 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|385803476|ref|YP_005839876.1| - 0.058 13.4 0.1 6.1 6.9 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|385803476|ref|YP_005839876.1| - 0.064 12.8 0.9 3.2 7.3 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding DUF2752 PF10825.8 gi|385803476|ref|YP_005839876.1| - 0.079 13.0 0.5 0.15 12.1 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) DUF1610 PF07754.11 gi|385803476|ref|YP_005839876.1| - 0.12 12.4 2.5 0.37 10.8 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.6 gi|385803476|ref|YP_005839876.1| - 0.13 11.7 1.8 5.6 6.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF2391 PF09622.10 gi|385803477|ref|YP_005839877.1| - 0.061 12.7 0.1 0.08 12.3 0.1 1.1 1 0 0 1 1 1 0 Putative integral membrane protein (DUF2391) Auxin_repressed PF05564.12 gi|385803480|ref|YP_005839880.1| - 0.093 13.4 0.4 0.16 12.6 0.3 1.5 1 1 1 2 2 2 0 Dormancy/auxin associated protein Anthrax_toxA PF03497.16 gi|385803481|ref|YP_005839881.1| - 0.099 12.8 0.0 0.1 12.7 0.0 1.2 1 0 0 1 1 1 0 Anthrax toxin LF subunit Auxin_repressed PF05564.12 gi|385803482|ref|YP_005839882.1| - 0.11 13.2 0.3 0.2 12.3 0.3 1.5 1 1 1 2 2 2 0 Dormancy/auxin associated protein Xan_ur_permease PF00860.20 gi|385803483|ref|YP_005839883.1| - 8.6e-93 311.1 45.1 1.2e-92 310.7 45.1 1.1 1 0 0 1 1 1 1 Permease family DUF4027 PF13219.6 gi|385803483|ref|YP_005839883.1| - 0.1 12.5 0.2 0.1 12.5 0.2 3.6 4 1 1 5 5 5 0 Protein of unknown function (DUF4027) CPBP PF02517.16 gi|385803484|ref|YP_005839884.1| - 1e-11 45.0 11.0 3.2e-11 43.5 11.0 2.1 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease DUF433 PF04255.14 gi|385803486|ref|YP_005839886.1| - 8.4e-08 32.0 0.0 1.4e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF433) DUF5615 PF18480.1 gi|385803487|ref|YP_005839887.1| - 3.7e-06 26.6 0.1 5.6e-06 26.0 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) DUF2964 PF11177.8 gi|385803491|ref|YP_005839891.1| - 6.1 7.1 8.6 2.4 8.4 0.3 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2964) Arc PF03869.14 gi|385803492|ref|YP_005839892.1| - 0.053 13.4 0.0 0.092 12.6 0.0 1.5 1 0 0 1 1 1 0 Arc-like DNA binding domain SWIM PF04434.17 gi|385803494|ref|YP_005839894.1| - 0.059 13.1 0.2 0.12 12.1 0.2 1.6 1 1 0 1 1 1 0 SWIM zinc finger Phage_holin_3_6 PF07332.11 gi|385803495|ref|YP_005839895.1| - 0.004 17.2 4.0 0.0045 17.0 4.0 1.1 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III DUF3040 PF11239.8 gi|385803495|ref|YP_005839895.1| - 0.44 10.9 4.0 0.55 10.5 4.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) TRIQK PF15168.6 gi|385803495|ref|YP_005839895.1| - 1.1 9.1 6.0 2.7 7.9 2.2 2.1 1 1 1 2 2 2 0 Triple QxxK/R motif-containing protein family DUF3464 PF11947.8 gi|385803496|ref|YP_005839896.1| - 1.5 8.6 2.7 1.9 8.2 2.7 1.1 1 0 0 1 1 1 0 Photosynthesis affected mutant 68 Metallophos PF00149.28 gi|385803498|ref|YP_005839898.1| - 2.3e-08 34.8 2.9 3.5e-08 34.2 2.9 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|385803498|ref|YP_005839898.1| - 3.6e-06 27.3 7.7 0.00015 22.0 7.7 2.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain AAA_23 PF13476.6 gi|385803499|ref|YP_005839899.1| - 7e-18 65.9 0.7 7e-18 65.9 0.7 7.6 1 1 2 3 3 2 1 AAA domain AAA_15 PF13175.6 gi|385803499|ref|YP_005839899.1| - 3.2e-11 43.6 4.7 3.2e-11 43.6 4.7 3.8 1 1 2 3 3 2 1 AAA ATPase domain AAA_13 PF13166.6 gi|385803499|ref|YP_005839899.1| - 4.6e-09 35.5 89.9 1.2e-06 27.5 16.7 5.5 2 1 2 5 5 5 5 AAA domain LPP PF04728.13 gi|385803499|ref|YP_005839899.1| - 2.4e-08 34.2 49.6 0.053 13.9 4.2 10.7 7 4 1 8 8 8 4 Lipoprotein leucine-zipper SbcCD_C PF13558.6 gi|385803499|ref|YP_005839899.1| - 1.5e-06 28.4 0.0 5.7e-06 26.5 0.0 2.1 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit BLOC1_2 PF10046.9 gi|385803499|ref|YP_005839899.1| - 1.2e-05 25.5 86.9 0.31 11.3 1.8 11.1 3 3 7 11 11 11 5 Biogenesis of lysosome-related organelles complex-1 subunit 2 NPV_P10 PF05531.12 gi|385803499|ref|YP_005839899.1| - 1.7e-05 25.1 61.1 2.1 8.9 0.3 9.9 3 2 4 7 7 7 2 Nucleopolyhedrovirus P10 protein AAA_21 PF13304.6 gi|385803499|ref|YP_005839899.1| - 3e-05 24.0 25.9 0.0013 18.6 0.0 4.8 2 1 1 4 4 3 2 AAA domain, putative AbiEii toxin, Type IV TA system TPR_MLP1_2 PF07926.12 gi|385803499|ref|YP_005839899.1| - 3.1e-05 24.0 109.5 0.00052 20.1 12.1 6.8 3 2 3 6 6 6 3 TPR/MLP1/MLP2-like protein DUF4407 PF14362.6 gi|385803499|ref|YP_005839899.1| - 4.5e-05 23.0 82.1 0.07 12.5 10.8 5.2 1 1 4 5 5 5 4 Domain of unknown function (DUF4407) Rad50_zn_hook PF04423.14 gi|385803499|ref|YP_005839899.1| - 0.00011 22.0 1.6 0.00011 22.0 1.6 7.9 10 1 1 11 11 8 1 Rad50 zinc hook motif DUF1664 PF07889.12 gi|385803499|ref|YP_005839899.1| - 0.00017 21.6 68.7 0.13 12.3 2.6 8.7 1 1 7 8 8 8 3 Protein of unknown function (DUF1664) AAA_29 PF13555.6 gi|385803499|ref|YP_005839899.1| - 0.00022 20.9 0.0 0.00044 19.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Baculo_PEP_C PF04513.12 gi|385803499|ref|YP_005839899.1| - 0.0013 18.7 43.6 0.72 9.9 4.3 7.3 2 2 3 6 6 6 4 Baculovirus polyhedron envelope protein, PEP, C terminus Laminin_I PF06008.14 gi|385803499|ref|YP_005839899.1| - 0.0037 17.0 8.2 0.0037 17.0 8.2 5.6 1 1 2 5 5 4 2 Laminin Domain I Prefoldin_2 PF01920.20 gi|385803499|ref|YP_005839899.1| - 0.0038 17.2 17.1 0.0038 17.2 17.1 11.1 2 1 5 8 8 5 2 Prefoldin subunit ABC_tran_CTD PF16326.5 gi|385803499|ref|YP_005839899.1| - 0.0044 17.2 10.8 0.0044 17.2 10.8 10.8 3 2 10 13 13 12 2 ABC transporter C-terminal domain Sec34 PF04136.15 gi|385803499|ref|YP_005839899.1| - 0.0046 16.9 64.8 0.16 11.9 7.1 7.9 1 1 3 7 7 7 3 Sec34-like family Spc7 PF08317.11 gi|385803499|ref|YP_005839899.1| - 0.0059 15.5 117.9 0.31 9.9 16.0 6.2 1 1 5 7 7 7 3 Spc7 kinetochore protein Laminin_II PF06009.12 gi|385803499|ref|YP_005839899.1| - 0.0068 16.4 4.7 0.0068 16.4 4.7 7.2 2 1 5 7 7 7 1 Laminin Domain II Phage_GP20 PF06810.11 gi|385803499|ref|YP_005839899.1| - 0.01 15.6 5.8 0.01 15.6 5.8 9.3 1 1 7 8 8 7 0 Phage minor structural protein GP20 DUF3800 PF12686.7 gi|385803499|ref|YP_005839899.1| - 0.013 16.1 1.6 23 5.6 1.6 4.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) DUF948 PF06103.11 gi|385803499|ref|YP_005839899.1| - 0.022 15.0 44.5 8 6.8 1.8 9.1 4 3 5 9 9 7 0 Bacterial protein of unknown function (DUF948) Atg14 PF10186.9 gi|385803499|ref|YP_005839899.1| - 0.03 13.4 83.2 0.28 10.2 11.6 5.0 1 1 4 5 5 5 0 Vacuolar sorting 38 and autophagy-related subunit 14 Zn-ribbon_8 PF09723.10 gi|385803499|ref|YP_005839899.1| - 0.068 13.3 0.2 0.18 12.0 0.2 1.7 1 0 0 1 1 1 0 Zinc ribbon domain zf-TFIIB PF13453.6 gi|385803499|ref|YP_005839899.1| - 0.093 12.1 0.3 0.26 10.6 0.3 1.8 1 0 0 1 1 1 0 Transcription factor zinc-finger ABC_tran PF00005.27 gi|385803499|ref|YP_005839899.1| - 0.15 12.6 0.0 0.15 12.6 0.0 6.3 2 1 0 2 2 1 0 ABC transporter FliD_N PF02465.18 gi|385803499|ref|YP_005839899.1| - 0.27 12.0 45.6 6.2 7.6 2.0 9.2 2 2 4 6 6 6 0 Flagellar hook-associated protein 2 N-terminus HsbA PF12296.8 gi|385803499|ref|YP_005839899.1| - 0.33 11.4 9.9 23 5.5 0.0 6.0 5 3 3 8 8 7 0 Hydrophobic surface binding protein A Fib_alpha PF08702.10 gi|385803499|ref|YP_005839899.1| - 0.35 11.1 72.3 0.13 12.5 2.9 7.3 1 1 5 7 7 7 0 Fibrinogen alpha/beta chain family CALCOCO1 PF07888.11 gi|385803499|ref|YP_005839899.1| - 0.52 9.1 119.3 4 6.2 41.2 3.7 1 1 2 3 3 3 0 Calcium binding and coiled-coil domain (CALCOCO1) like EzrA PF06160.12 gi|385803499|ref|YP_005839899.1| - 0.57 8.3 96.4 0.023 12.9 20.8 3.9 1 1 1 3 3 3 0 Septation ring formation regulator, EzrA MAD PF05557.13 gi|385803499|ref|YP_005839899.1| - 0.75 8.1 111.1 0.25 9.7 27.6 4.1 1 1 3 4 4 4 0 Mitotic checkpoint protein MukB PF04310.12 gi|385803499|ref|YP_005839899.1| - 0.92 9.3 0.0 0.92 9.3 0.0 5.5 4 2 2 6 6 6 0 MukB N-terminal GAS PF13851.6 gi|385803499|ref|YP_005839899.1| - 1.1 8.6 107.6 0.31 10.4 13.1 6.6 1 1 3 6 6 6 0 Growth-arrest specific micro-tubule binding Seryl_tRNA_N PF02403.22 gi|385803499|ref|YP_005839899.1| - 1.3 9.3 107.0 0.17 12.1 5.8 9.3 1 1 7 9 9 8 0 Seryl-tRNA synthetase N-terminal domain T3SSipB PF16535.5 gi|385803499|ref|YP_005839899.1| - 1.6 9.2 64.0 3.5 8.1 2.6 7.4 2 2 5 7 7 7 0 Type III cell invasion protein SipB APG17 PF04108.12 gi|385803499|ref|YP_005839899.1| - 2 7.4 68.9 0.03 13.4 6.4 6.1 2 2 2 5 5 5 0 Autophagy protein Apg17 Syntaxin-6_N PF09177.11 gi|385803499|ref|YP_005839899.1| - 2.8 8.5 89.9 0.25 11.9 3.4 9.2 2 2 5 8 8 8 0 Syntaxin 6, N-terminal DUF812 PF05667.11 gi|385803499|ref|YP_005839899.1| - 3 6.6 107.0 1 8.1 34.7 4.6 1 1 2 4 4 4 0 Protein of unknown function (DUF812) Exonuc_VII_L PF02601.15 gi|385803499|ref|YP_005839899.1| - 4.8 6.7 67.4 0.19 11.3 10.0 4.6 1 1 2 3 3 2 0 Exonuclease VII, large subunit DHR10 PF18595.1 gi|385803499|ref|YP_005839899.1| - 5.1 7.2 127.8 0.4 10.7 7.3 7.9 2 2 4 7 7 7 0 Designed helical repeat protein 10 domain WHEP-TRS PF00458.20 gi|385803499|ref|YP_005839899.1| - 6.5 7.0 13.2 2.3 8.4 0.1 5.0 3 2 1 4 4 3 0 WHEP-TRS domain Mce4_CUP1 PF11887.8 gi|385803499|ref|YP_005839899.1| - 6.5 6.1 14.8 2.8 7.3 1.3 4.5 3 2 1 5 5 5 0 Cholesterol uptake porter CUP1 of Mce4, putative DUF4201 PF13870.6 gi|385803499|ref|YP_005839899.1| - 8.1 6.1 98.3 0.94 9.2 10.9 6.6 2 2 4 6 6 6 0 Domain of unknown function (DUF4201) NurA PF09376.10 gi|385803500|ref|YP_005839900.1| - 9.8e-18 64.7 0.3 1.3e-17 64.3 0.0 1.4 2 0 0 2 2 2 1 NurA domain Pro_Al_protease PF02983.14 gi|385803500|ref|YP_005839900.1| - 0.091 12.8 0.1 0.31 11.1 0.1 2.0 1 0 0 1 1 1 0 Alpha-lytic protease prodomain Costars PF14705.6 gi|385803500|ref|YP_005839900.1| - 0.14 12.3 0.0 0.29 11.3 0.0 1.5 1 0 0 1 1 1 0 Costars Mucin_bdg PF03272.13 gi|385803501|ref|YP_005839901.1| - 0.098 12.7 0.1 5.1 7.2 0.0 2.2 2 0 0 2 2 2 0 Putative mucin or carbohydrate-binding module DUF87 PF01935.17 gi|385803502|ref|YP_005839902.1| - 8e-30 104.6 0.0 1.5e-29 103.8 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|385803502|ref|YP_005839902.1| - 0.00011 21.0 0.0 0.0013 17.4 0.0 2.1 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|385803502|ref|YP_005839902.1| - 0.0055 15.7 0.0 0.046 12.6 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 gi|385803502|ref|YP_005839902.1| - 0.012 15.7 0.0 0.06 13.3 0.0 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit T4SS-DNA_transf PF02534.14 gi|385803502|ref|YP_005839902.1| - 0.073 11.9 0.0 0.18 10.6 0.0 1.5 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer MeaB PF03308.16 gi|385803502|ref|YP_005839902.1| - 0.14 11.1 0.0 0.27 10.2 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF4870 PF09685.10 gi|385803503|ref|YP_005839903.1| - 1.1e-24 86.6 5.0 1.2e-24 86.5 5.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4870) RTP1_C2 PF10304.9 gi|385803503|ref|YP_005839903.1| - 0.08 12.7 0.1 0.14 11.9 0.1 1.4 1 0 0 1 1 1 0 Required for nuclear transport of RNA pol II C-terminus 2 DUF2207 PF09972.9 gi|385803503|ref|YP_005839903.1| - 0.8 8.4 2.6 0.92 8.2 2.6 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Phage_holin_3_3 PF16083.5 gi|385803504|ref|YP_005839904.1| - 0.013 15.6 1.5 0.33 11.1 0.0 2.2 2 0 0 2 2 2 0 LydA holin phage, holin superfamily III DUF4462 PF14692.6 gi|385803504|ref|YP_005839904.1| - 6.4 6.3 6.6 4.7 6.8 1.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4462) DUF4397 PF14344.6 gi|385803506|ref|YP_005839906.1| - 2.1e-85 283.5 16.5 2.6e-35 121.8 1.3 4.1 4 0 0 4 4 4 4 Domain of unknown function (DUF4397) AlgF PF11182.8 gi|385803506|ref|YP_005839906.1| - 1.9e-05 24.6 0.5 0.074 12.8 0.0 3.8 4 0 0 4 4 4 2 Alginate O-acetyl transferase AlgF Y_Y_Y PF07495.13 gi|385803506|ref|YP_005839906.1| - 0.0082 16.1 0.0 3.8 7.5 0.0 3.3 3 0 0 3 3 3 1 Y_Y_Y domain Hva1_TUDOR PF11160.8 gi|385803506|ref|YP_005839906.1| - 0.015 15.4 0.0 4.2 7.6 0.0 3.0 2 0 0 2 2 2 0 Hypervirulence associated proteins TUDOR domain DUF4493 PF14900.6 gi|385803506|ref|YP_005839906.1| - 0.033 14.1 0.6 27 4.5 0.0 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4493) DUF2846 PF11008.8 gi|385803506|ref|YP_005839906.1| - 0.037 14.1 0.1 48 4.1 0.0 3.8 4 0 0 4 4 4 0 Protein of unknown function (DUF2846) CBM_X2 PF03442.14 gi|385803506|ref|YP_005839906.1| - 0.11 12.6 0.0 11 6.2 0.0 2.7 2 0 0 2 2 2 0 Carbohydrate binding domain X2 DUF1533 PF07550.11 gi|385803506|ref|YP_005839906.1| - 0.14 12.1 0.0 23 4.9 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1533) GDPD PF03009.17 gi|385803507|ref|YP_005839907.1| - 5.4e-22 78.8 0.3 1.2e-12 48.2 0.5 2.1 1 1 1 2 2 2 2 Glycerophosphoryl diester phosphodiesterase family MarR_2 PF12802.7 gi|385803508|ref|YP_005839908.1| - 4.1e-07 29.8 0.0 6.5e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|385803508|ref|YP_005839908.1| - 5.9e-05 23.0 0.1 8.7e-05 22.4 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|385803508|ref|YP_005839908.1| - 0.00016 21.9 0.0 0.00028 21.2 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.19 gi|385803508|ref|YP_005839908.1| - 0.0004 20.2 0.0 0.00072 19.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.9 gi|385803508|ref|YP_005839908.1| - 0.00042 20.4 0.0 0.00056 20.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_24 PF13412.6 gi|385803508|ref|YP_005839908.1| - 0.00094 18.7 0.1 0.0017 17.8 0.1 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|385803508|ref|YP_005839908.1| - 0.0014 18.4 0.0 0.0021 17.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|385803508|ref|YP_005839908.1| - 0.0017 18.5 0.0 0.0034 17.6 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|385803508|ref|YP_005839908.1| - 0.0019 18.7 0.1 0.0034 17.8 0.1 1.6 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_29 PF13551.6 gi|385803508|ref|YP_005839908.1| - 0.0025 17.8 0.1 0.0046 16.9 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn helix MarR PF01047.22 gi|385803508|ref|YP_005839908.1| - 0.0039 17.1 0.0 0.0066 16.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|385803508|ref|YP_005839908.1| - 0.017 15.1 0.1 0.027 14.4 0.1 1.3 1 0 0 1 1 1 0 HTH domain HTH_45 PF14947.6 gi|385803508|ref|YP_005839908.1| - 0.017 15.1 0.0 0.023 14.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DprA_WH PF17782.1 gi|385803508|ref|YP_005839908.1| - 0.02 15.0 0.0 0.031 14.4 0.0 1.4 1 0 0 1 1 1 0 DprA winged helix domain HTH_36 PF13730.6 gi|385803508|ref|YP_005839908.1| - 0.023 14.6 0.0 0.035 14.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain PaaX PF07848.12 gi|385803508|ref|YP_005839908.1| - 0.038 14.2 0.2 0.096 12.9 0.2 1.7 1 1 0 1 1 1 0 PaaX-like protein TFIIE_alpha PF02002.17 gi|385803508|ref|YP_005839908.1| - 0.039 13.8 0.1 0.062 13.2 0.1 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_20 PF12840.7 gi|385803508|ref|YP_005839908.1| - 0.066 13.3 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|385803508|ref|YP_005839908.1| - 0.093 12.2 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.6 gi|385803508|ref|YP_005839908.1| - 0.095 12.5 0.2 0.21 11.4 0.0 1.6 2 0 0 2 2 2 0 Homeodomain-like domain HTH_47 PF16221.5 gi|385803508|ref|YP_005839908.1| - 0.13 11.8 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 winged helix-turn-helix HTH_5 PF01022.20 gi|385803508|ref|YP_005839908.1| - 0.15 12.0 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Glyco_tranf_2_4 PF13704.6 gi|385803508|ref|YP_005839908.1| - 0.68 10.5 7.3 1.1 9.8 2.2 2.9 1 1 1 2 2 2 0 Glycosyl transferase family 2 PemK_toxin PF02452.17 gi|385803509|ref|YP_005839909.1| - 0.0011 19.3 0.0 0.0013 19.1 0.0 1.1 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system DUF3368 PF11848.8 gi|385803511|ref|YP_005839911.1| - 1.9e-13 49.9 0.0 1e-12 47.6 0.0 2.2 3 0 0 3 3 3 1 Domain of unknown function (DUF3368) OAM_alpha PF16552.5 gi|385803511|ref|YP_005839911.1| - 0.063 13.2 0.1 6.1 6.8 0.0 2.2 1 1 1 2 2 2 0 D-ornithine 4,5-aminomutase alpha-subunit UPF0175 PF03683.13 gi|385803512|ref|YP_005839912.1| - 6e-09 35.5 0.3 6e-09 35.5 0.3 1.6 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.21 gi|385803512|ref|YP_005839912.1| - 0.71 9.9 8.0 0.15 12.1 1.6 2.7 3 1 0 3 3 3 0 Ribbon-helix-helix protein, copG family RHH_6 PF16762.5 gi|385803515|ref|YP_005839915.1| - 0.00039 21.0 2.6 0.16 12.6 2.6 2.5 1 1 0 1 1 1 1 Ribbon-helix-helix domain RHH_8 PF17723.1 gi|385803515|ref|YP_005839915.1| - 0.0009 19.4 0.2 0.0019 18.4 0.2 1.7 1 1 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family tRNA-synt_1d PF00750.19 gi|385803515|ref|YP_005839915.1| - 0.1 11.5 0.2 0.11 11.4 0.2 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (R) DUF1843 PF08898.10 gi|385803515|ref|YP_005839915.1| - 0.2 12.2 4.0 0.27 11.7 0.8 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF1843) FUSC PF04632.12 gi|385803515|ref|YP_005839915.1| - 1.2 7.6 4.0 1.5 7.3 4.0 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family zf-ribbon_3 PF13248.6 gi|385803517|ref|YP_005839917.1| - 0.018 14.4 3.6 2.1 7.9 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|385803517|ref|YP_005839917.1| - 0.066 13.6 0.2 0.16 12.4 0.2 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar Mito_fiss_reg PF05308.11 gi|385803517|ref|YP_005839917.1| - 0.1 12.7 0.0 0.13 12.4 0.0 1.0 1 0 0 1 1 1 0 Mitochondrial fission regulator DUF2387 PF09526.10 gi|385803517|ref|YP_005839917.1| - 0.14 12.3 1.7 0.2 11.9 0.1 1.9 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) Nudix_N_2 PF14803.6 gi|385803517|ref|YP_005839917.1| - 0.23 11.4 2.7 0.63 10.0 0.3 2.4 2 0 0 2 2 2 0 Nudix N-terminal Mso1_Sec1_bdg PF14475.6 gi|385803518|ref|YP_005839918.1| - 0.13 11.8 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 Sec1-binding region of Mso1 DrsE PF02635.15 gi|385803520|ref|YP_005839920.1| - 5.2e-08 33.3 0.0 6.2e-08 33.0 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family PAS_4 PF08448.10 gi|385803521|ref|YP_005839921.1| - 9.7e-26 90.2 7.3 6.4e-12 45.7 0.1 4.7 4 0 0 4 4 4 3 PAS fold PAS_3 PF08447.12 gi|385803521|ref|YP_005839921.1| - 3.8e-23 81.6 5.9 3e-11 43.5 0.1 5.0 5 0 0 5 5 5 3 PAS fold Response_reg PF00072.24 gi|385803521|ref|YP_005839921.1| - 4.3e-22 78.4 0.0 1.6e-21 76.5 0.0 2.1 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|385803521|ref|YP_005839921.1| - 1.6e-17 64.0 0.3 5.3e-17 62.3 0.3 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|385803521|ref|YP_005839921.1| - 2.9e-16 59.6 8.6 3.6e-05 24.0 0.0 5.2 5 1 0 5 5 5 4 PAS domain HisKA PF00512.25 gi|385803521|ref|YP_005839921.1| - 4.3e-16 58.7 0.6 4.3e-16 58.7 0.6 3.2 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|385803521|ref|YP_005839921.1| - 5e-11 42.6 12.2 7.6e-05 22.7 0.0 5.9 6 0 0 6 6 6 3 PAS fold PAS_8 PF13188.7 gi|385803521|ref|YP_005839921.1| - 9.5e-09 35.1 0.0 0.00015 21.7 0.0 3.6 3 0 0 3 3 3 2 PAS domain HATPase_c_5 PF14501.6 gi|385803521|ref|YP_005839921.1| - 1.9e-06 27.7 1.9 0.00014 21.7 0.1 3.2 3 0 0 3 3 3 1 GHKL domain HATPase_c_2 PF13581.6 gi|385803521|ref|YP_005839921.1| - 0.0035 17.3 0.2 0.014 15.3 0.2 2.1 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|385803521|ref|YP_005839921.1| - 0.11 12.3 2.2 0.5 10.2 2.2 2.1 1 1 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF4735 PF15882.5 gi|385803521|ref|YP_005839921.1| - 0.12 11.8 0.5 1.1 8.6 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4735) zf-LITAF-like PF10601.9 gi|385803522|ref|YP_005839922.1| - 0.00049 20.3 0.2 0.029 14.6 0.0 2.1 2 0 0 2 2 2 1 LITAF-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|385803522|ref|YP_005839922.1| - 0.00052 20.1 0.3 0.23 11.6 0.1 2.1 2 0 0 2 2 2 2 Zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|385803522|ref|YP_005839922.1| - 0.0025 17.7 0.8 0.35 10.9 0.2 2.1 2 0 0 2 2 2 1 zinc-ribbons DZR PF12773.7 gi|385803522|ref|YP_005839922.1| - 0.0032 17.4 0.2 0.0058 16.6 0.2 1.4 1 1 0 1 1 1 1 Double zinc ribbon DNA_ligase_ZBD PF03119.16 gi|385803522|ref|YP_005839922.1| - 0.0048 16.9 1.2 0.17 11.9 0.1 2.2 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain UPF0547 PF10571.9 gi|385803522|ref|YP_005839922.1| - 0.0054 16.8 4.7 1.1 9.4 0.1 2.4 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 CpXC PF14353.6 gi|385803522|ref|YP_005839922.1| - 0.0075 16.3 0.7 0.025 14.6 0.7 1.7 1 1 0 1 1 1 1 CpXC protein zf-ribbon_3 PF13248.6 gi|385803522|ref|YP_005839922.1| - 0.012 15.0 0.5 1.1 8.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|385803522|ref|YP_005839922.1| - 0.016 14.6 2.2 0.6 9.5 0.4 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_9 PF14369.6 gi|385803522|ref|YP_005839922.1| - 0.022 15.0 1.1 11 6.4 0.1 2.9 3 0 0 3 3 3 0 zinc-ribbon zf_UBZ PF18439.1 gi|385803522|ref|YP_005839922.1| - 0.029 14.0 2.4 2.1 8.0 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-C2H2 PF00096.26 gi|385803522|ref|YP_005839922.1| - 0.032 14.7 1.7 2.5 8.7 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type TF_Zn_Ribbon PF08271.12 gi|385803522|ref|YP_005839922.1| - 0.054 13.0 1.4 1.3 8.6 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding CxC5 PF18718.1 gi|385803522|ref|YP_005839922.1| - 0.056 13.5 0.1 0.064 13.3 0.1 1.1 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases Mut7-C PF01927.16 gi|385803522|ref|YP_005839922.1| - 0.13 12.3 0.0 0.16 12.1 0.0 1.1 1 0 0 1 1 1 0 Mut7-C RNAse domain Sgf11 PF08209.11 gi|385803522|ref|YP_005839922.1| - 0.36 10.4 2.4 0.38 10.3 0.1 1.9 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-ACC PF17848.1 gi|385803522|ref|YP_005839922.1| - 0.73 10.0 6.7 12 6.1 1.8 2.4 2 1 1 3 3 3 0 Acetyl-coA carboxylase zinc finger domain VAPB_antitox PF02697.14 gi|385803524|ref|YP_005839924.1| - 9.7e-11 42.3 1.1 1.3e-10 41.9 1.1 1.2 1 0 0 1 1 1 1 Putative antitoxin RHH_1 PF01402.21 gi|385803524|ref|YP_005839924.1| - 0.062 13.3 4.1 0.074 13.0 0.4 2.5 2 1 1 3 3 3 0 Ribbon-helix-helix protein, copG family PIN PF01850.21 gi|385803525|ref|YP_005839925.1| - 4.8e-10 40.0 0.0 6e-10 39.7 0.0 1.1 1 0 0 1 1 1 1 PIN domain GerPE PF10970.8 gi|385803525|ref|YP_005839925.1| - 0.13 12.5 0.0 0.17 12.1 0.0 1.2 1 0 0 1 1 1 0 Spore germination protein GerPE PDDEXK_1 PF12705.7 gi|385803526|ref|YP_005839926.1| - 7e-12 45.8 0.0 4.4e-11 43.2 0.0 2.3 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Haemagg_act PF05860.13 gi|385803526|ref|YP_005839926.1| - 0.14 12.0 0.0 0.32 10.9 0.0 1.5 1 0 0 1 1 1 0 haemagglutination activity domain UvrD-helicase PF00580.21 gi|385803527|ref|YP_005839927.1| - 2.3e-50 171.9 0.0 6.4e-50 170.4 0.0 1.8 2 1 0 2 2 2 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|385803527|ref|YP_005839927.1| - 4.5e-28 98.6 0.0 5.1e-16 59.0 0.0 2.3 1 1 1 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|385803527|ref|YP_005839927.1| - 5.1e-25 88.5 0.0 2.7e-24 86.2 0.0 2.2 1 1 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.6 gi|385803527|ref|YP_005839927.1| - 2.3e-08 33.7 0.4 0.00018 21.3 0.2 2.5 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.7 gi|385803527|ref|YP_005839927.1| - 2.7e-06 27.5 1.2 2.3e-05 24.5 0.3 2.6 2 1 1 3 3 3 1 PD-(D/E)XK nuclease superfamily AAA_30 PF13604.6 gi|385803527|ref|YP_005839927.1| - 3.6e-06 26.8 0.0 2.1e-05 24.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_12 PF13087.6 gi|385803527|ref|YP_005839927.1| - 0.0015 18.2 0.2 0.041 13.5 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|385803527|ref|YP_005839927.1| - 0.043 13.6 1.4 5.6 6.7 0.0 2.7 3 0 0 3 3 3 0 AAA domain Viral_helicase1 PF01443.18 gi|385803527|ref|YP_005839927.1| - 0.051 13.3 1.8 27 4.4 0.1 3.7 4 0 0 4 4 4 0 Viral (Superfamily 1) RNA helicase DUF2800 PF10926.8 gi|385803527|ref|YP_005839927.1| - 0.067 12.4 0.1 0.15 11.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2800) Metallophos PF00149.28 gi|385803528|ref|YP_005839928.1| - 2.3e-11 44.6 0.0 2.9e-11 44.2 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Cas_TM1802 PF09484.10 gi|385803530|ref|YP_005839930.1| - 1.4e-18 67.0 0.0 3e-18 65.9 0.0 1.5 1 1 0 1 1 1 1 CRISPR-associated protein TM1802 (cas_TM1802) DUF1679 PF07914.11 gi|385803530|ref|YP_005839930.1| - 0.0028 16.6 0.2 0.0047 15.8 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1679) Cas_Cas7 PF05107.12 gi|385803531|ref|YP_005839931.1| - 4.7e-45 154.1 0.0 5.9e-45 153.8 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein Cas7 Cas_Cas5d PF09704.10 gi|385803532|ref|YP_005839932.1| - 9e-10 38.8 0.0 1.3e-09 38.3 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) FAM91_N PF14647.6 gi|385803532|ref|YP_005839932.1| - 0.13 11.6 0.0 0.19 11.0 0.0 1.2 1 0 0 1 1 1 0 FAM91 N-terminus DEAD PF00270.29 gi|385803533|ref|YP_005839933.1| - 7.5e-07 29.1 0.1 1.5e-06 28.1 0.1 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase HD_6 PF18019.1 gi|385803533|ref|YP_005839933.1| - 1.1e-06 28.9 0.1 4.7e-06 26.9 0.0 2.1 2 0 0 2 2 2 1 HD domain ResIII PF04851.15 gi|385803533|ref|YP_005839933.1| - 0.00084 19.4 0.0 0.002 18.2 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HD PF01966.22 gi|385803533|ref|YP_005839933.1| - 0.0046 17.2 0.0 0.013 15.7 0.0 1.8 1 0 0 1 1 1 1 HD domain DUF1640 PF07798.11 gi|385803533|ref|YP_005839933.1| - 0.069 13.2 0.1 0.21 11.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1640) Cas_Cas4 PF01930.17 gi|385803534|ref|YP_005839934.1| - 2.6e-46 157.7 0.0 2.9e-46 157.5 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|385803534|ref|YP_005839934.1| - 0.0024 17.8 0.0 0.0026 17.7 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas1 PF01867.16 gi|385803535|ref|YP_005839935.1| - 3.2e-84 282.4 0.0 3.8e-84 282.2 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 CRISPR_Cas2 PF09827.9 gi|385803536|ref|YP_005839936.1| - 5.7e-14 52.1 0.0 6.7e-14 51.8 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 RHH_1 PF01402.21 gi|385803537|ref|YP_005839937.1| - 0.00085 19.2 4.9 0.0033 17.3 1.3 2.6 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|385803537|ref|YP_005839937.1| - 0.024 14.6 0.0 0.04 13.9 0.0 1.3 1 0 0 1 1 1 0 Ribbon-helix-helix domain Rhomboid PF01694.22 gi|385803538|ref|YP_005839938.1| - 0.0017 18.4 17.0 0.18 11.8 9.9 2.7 1 1 1 2 2 2 2 Rhomboid family DUF3087 PF11286.8 gi|385803538|ref|YP_005839938.1| - 0.63 9.5 2.8 15 5.0 0.1 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF3087) MazE_antitoxin PF04014.18 gi|385803539|ref|YP_005839939.1| - 1.7e-09 37.4 0.2 2e-09 37.1 0.2 1.1 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|385803539|ref|YP_005839939.1| - 8.4e-05 22.9 0.0 9.8e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin DUF262 PF03235.14 gi|385803540|ref|YP_005839940.1| - 7.2e-29 101.5 1.1 7.2e-29 101.5 1.1 3.0 3 1 0 3 3 3 1 Protein of unknown function DUF262 DUF1524 PF07510.11 gi|385803540|ref|YP_005839940.1| - 2.1e-18 66.6 0.4 4.2e-18 65.5 0.4 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1524) KfrA_N PF11740.8 gi|385803540|ref|YP_005839940.1| - 0.49 11.1 1.7 0.51 11.0 0.0 1.9 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term DUF438 PF04282.13 gi|385803540|ref|YP_005839940.1| - 0.68 9.9 2.2 16 5.6 0.0 3.1 3 0 0 3 3 3 0 Family of unknown function (DUF438) RVT_3 PF13456.6 gi|385803541|ref|YP_005839941.1| - 0.071 12.9 0.1 0.077 12.8 0.1 1.0 1 0 0 1 1 1 0 Reverse transcriptase-like TrmB PF01978.19 gi|385803543|ref|YP_005839943.1| - 0.0055 16.6 0.0 0.014 15.3 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FaeA PF04703.12 gi|385803543|ref|YP_005839943.1| - 0.046 14.1 0.0 0.079 13.3 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein SUa-2TM PF18179.1 gi|385803543|ref|YP_005839943.1| - 0.048 12.9 0.3 0.067 12.5 0.3 1.2 1 0 0 1 1 1 0 SMODS- and Ubiquitin system-associated 2TM effector domain Rrf2 PF02082.20 gi|385803543|ref|YP_005839943.1| - 0.13 12.7 0.0 0.25 11.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator SpdB PF05122.13 gi|385803544|ref|YP_005839944.1| - 0.35 11.0 1.6 0.44 10.7 0.4 1.7 2 0 0 2 2 2 0 Mobile element transfer protein SNAP-25 PF00835.19 gi|385803546|ref|YP_005839946.1| - 0.076 13.3 0.1 2.1 8.7 0.0 2.1 2 0 0 2 2 2 0 SNAP-25 family HTH_20 PF12840.7 gi|385803547|ref|YP_005839947.1| - 0.042 13.9 0.1 0.062 13.4 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Methyltransf_17 PF12692.7 gi|385803547|ref|YP_005839947.1| - 0.072 13.1 0.0 0.091 12.8 0.0 1.1 1 0 0 1 1 1 0 S-adenosyl-L-methionine methyltransferase HU-CCDC81_bac_2 PF18175.1 gi|385803547|ref|YP_005839947.1| - 0.11 12.4 0.0 0.26 11.2 0.0 1.6 2 0 0 2 2 2 0 CCDC81-like prokaryotic HU domain 2 DUF262 PF03235.14 gi|385803550|ref|YP_005839950.1| - 2e-37 129.5 3.5 2e-37 129.5 3.5 2.3 2 1 0 2 2 2 1 Protein of unknown function DUF262 DUF1524 PF07510.11 gi|385803550|ref|YP_005839950.1| - 9.2e-30 103.3 3.6 2.8e-29 101.8 3.6 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF1524) TERF2_RBM PF16772.5 gi|385803550|ref|YP_005839950.1| - 0.1 12.0 0.0 0.33 10.4 0.0 1.8 2 0 0 2 2 2 0 Telomeric repeat-binding factor 2 Rap1-binding motif DUF790 PF05626.11 gi|385803552|ref|YP_005839952.1| - 2e-145 484.4 0.0 2.3e-145 484.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) ResIII PF04851.15 gi|385803553|ref|YP_005839953.1| - 2.3e-24 86.3 0.0 9.4e-24 84.3 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|385803553|ref|YP_005839953.1| - 9e-23 80.7 0.1 1.4e-22 80.1 0.1 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase Helicase_C PF00271.31 gi|385803553|ref|YP_005839953.1| - 2e-16 60.3 0.0 6.5e-16 58.6 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain XPB_DRD PF18458.1 gi|385803553|ref|YP_005839953.1| - 3e-14 52.6 0.5 3e-14 52.6 0.5 2.6 3 0 0 3 3 3 1 Xeroderma pigmentosum group B helicase damage recognition domain DEAD PF00270.29 gi|385803553|ref|YP_005839953.1| - 4.5e-09 36.3 0.0 1.1e-08 35.0 0.0 1.7 1 1 0 1 1 1 1 DEAD/DEAH box helicase IstB_IS21 PF01695.17 gi|385803553|ref|YP_005839953.1| - 0.0013 18.5 0.0 0.12 12.1 0.0 2.9 3 0 0 3 3 3 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|385803553|ref|YP_005839953.1| - 0.013 15.8 0.0 0.078 13.2 0.0 2.4 2 1 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|385803553|ref|YP_005839953.1| - 0.039 13.4 0.0 0.066 12.7 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein Helicase_C_2 PF13307.6 gi|385803553|ref|YP_005839953.1| - 0.12 12.5 0.2 5.5 7.1 0.0 2.9 2 1 1 3 3 3 0 Helicase C-terminal domain DUF2800 PF10926.8 gi|385803555|ref|YP_005839955.1| - 0.001 18.4 0.0 0.0015 17.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2800) Spc7 PF08317.11 gi|385803555|ref|YP_005839955.1| - 0.029 13.2 2.3 0.052 12.4 2.3 1.5 1 0 0 1 1 1 0 Spc7 kinetochore protein DivIC PF04977.15 gi|385803555|ref|YP_005839955.1| - 0.029 14.1 1.3 0.067 13.0 0.3 2.1 2 0 0 2 2 2 0 Septum formation initiator Med9 PF07544.13 gi|385803555|ref|YP_005839955.1| - 0.13 12.4 0.8 0.59 10.3 0.6 2.3 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 XhlA PF10779.9 gi|385803555|ref|YP_005839955.1| - 0.17 12.1 0.6 0.51 10.6 0.6 1.8 1 0 0 1 1 1 0 Haemolysin XhlA DUF1640 PF07798.11 gi|385803555|ref|YP_005839955.1| - 0.24 11.4 4.7 0.11 12.6 2.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1640) DUF4407 PF14362.6 gi|385803555|ref|YP_005839955.1| - 2.2 7.6 5.5 24 4.2 5.5 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) NikR_C PF08753.11 gi|385803556|ref|YP_005839956.1| - 3.6e-08 33.5 0.1 6.5e-08 32.6 0.0 1.5 2 0 0 2 2 2 1 NikR C terminal nickel binding domain Transcrip_act PF04949.13 gi|385803556|ref|YP_005839956.1| - 0.11 12.4 0.1 0.16 11.9 0.1 1.2 1 0 0 1 1 1 0 Transcriptional activator Rubis-subs-bind PF09273.11 gi|385803556|ref|YP_005839956.1| - 0.13 13.0 0.0 0.18 12.5 0.0 1.3 1 0 0 1 1 1 0 Rubisco LSMT substrate-binding CbiM PF01891.16 gi|385803557|ref|YP_005839957.1| - 1.7e-31 109.7 24.3 2e-31 109.5 24.3 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region ECF_trnsprt PF12822.7 gi|385803557|ref|YP_005839957.1| - 0.03 14.4 27.9 0.0094 16.1 21.0 2.3 1 1 1 2 2 2 0 ECF transporter, substrate-specific component DUF3918 PF13056.6 gi|385803558|ref|YP_005839958.1| - 0.039 13.6 0.1 3.4 7.4 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3918) CbiQ PF02361.16 gi|385803559|ref|YP_005839959.1| - 4.7e-30 104.8 5.8 6.2e-30 104.5 5.8 1.1 1 0 0 1 1 1 1 Cobalt transport protein HutD PF05962.11 gi|385803559|ref|YP_005839959.1| - 0.076 13.0 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 HutD ABC_tran PF00005.27 gi|385803560|ref|YP_005839960.1| - 7.5e-28 97.8 0.0 1e-27 97.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385803560|ref|YP_005839960.1| - 3.1e-13 50.2 2.2 6.4e-09 36.0 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385803560|ref|YP_005839960.1| - 2.5e-08 33.6 0.0 1.4e-07 31.1 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|385803560|ref|YP_005839960.1| - 2e-05 24.3 0.0 3.9e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MukB PF04310.12 gi|385803560|ref|YP_005839960.1| - 0.00041 20.2 0.0 0.00065 19.6 0.0 1.3 1 0 0 1 1 1 1 MukB N-terminal AAA_23 PF13476.6 gi|385803560|ref|YP_005839960.1| - 0.00075 20.0 0.0 0.0011 19.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|385803560|ref|YP_005839960.1| - 0.00084 19.2 0.0 0.065 12.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|385803560|ref|YP_005839960.1| - 0.0034 17.3 0.0 0.014 15.3 0.0 1.9 2 0 0 2 2 2 1 RsgA GTPase AAA_28 PF13521.6 gi|385803560|ref|YP_005839960.1| - 0.0046 17.2 0.1 0.0099 16.1 0.1 1.6 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|385803560|ref|YP_005839960.1| - 0.0057 15.5 0.5 0.013 14.3 0.1 1.6 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_13 PF13166.6 gi|385803560|ref|YP_005839960.1| - 0.011 14.4 0.0 0.33 9.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|385803560|ref|YP_005839960.1| - 0.012 16.0 0.1 0.021 15.2 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|385803560|ref|YP_005839960.1| - 0.014 15.2 0.0 0.026 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|385803560|ref|YP_005839960.1| - 0.023 14.0 0.0 0.17 11.1 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin AAA_33 PF13671.6 gi|385803560|ref|YP_005839960.1| - 0.053 13.7 0.0 0.093 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|385803560|ref|YP_005839960.1| - 0.1 12.9 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|385803560|ref|YP_005839960.1| - 0.11 12.6 0.0 0.62 10.2 0.0 2.2 3 0 0 3 3 3 0 50S ribosome-binding GTPase NACHT PF05729.12 gi|385803560|ref|YP_005839960.1| - 0.12 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_27 PF13514.6 gi|385803560|ref|YP_005839960.1| - 0.15 11.6 0.0 0.35 10.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|385803560|ref|YP_005839960.1| - 0.17 12.1 0.1 0.31 11.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain NikR_C PF08753.11 gi|385803561|ref|YP_005839961.1| - 3.5e-18 65.5 0.4 5.8e-18 64.8 0.1 1.5 2 0 0 2 2 2 1 NikR C terminal nickel binding domain UPF0061 PF02696.14 gi|385803562|ref|YP_005839962.1| - 1.3e-106 357.2 0.5 1.1e-104 350.8 0.5 2.0 1 1 0 1 1 1 1 Uncharacterized ACR, YdiU/UPF0061 family Phenyl_P_gamma PF09662.10 gi|385803562|ref|YP_005839962.1| - 0.091 12.9 0.0 0.99 9.6 0.0 2.5 2 0 0 2 2 2 0 Phenylphosphate carboxylase gamma subunit (Phenyl_P_gamma) PemK_toxin PF02452.17 gi|385803563|ref|YP_005839963.1| - 2.5e-23 82.6 0.1 2.8e-23 82.4 0.1 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system MarR_2 PF12802.7 gi|385803565|ref|YP_005839965.1| - 3.5e-06 26.8 0.0 5.5e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|385803565|ref|YP_005839965.1| - 0.00013 21.9 0.0 0.00017 21.5 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|385803565|ref|YP_005839965.1| - 0.00016 21.2 0.0 0.00025 20.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|385803565|ref|YP_005839965.1| - 0.00064 20.0 0.0 0.00089 19.6 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.6 gi|385803565|ref|YP_005839965.1| - 0.0012 18.3 0.0 0.0018 17.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|385803565|ref|YP_005839965.1| - 0.0015 18.4 0.0 0.0026 17.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.12 gi|385803565|ref|YP_005839965.1| - 0.0018 17.9 0.0 0.0031 17.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 DUF4423 PF14394.6 gi|385803565|ref|YP_005839965.1| - 0.0019 18.0 0.1 0.0067 16.1 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) PaaX PF07848.12 gi|385803565|ref|YP_005839965.1| - 0.0035 17.5 0.0 0.0063 16.7 0.0 1.4 1 0 0 1 1 1 1 PaaX-like protein HTH_5 PF01022.20 gi|385803565|ref|YP_005839965.1| - 0.0044 16.9 0.0 0.0065 16.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|385803565|ref|YP_005839965.1| - 0.0061 16.7 0.0 0.011 15.9 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|385803565|ref|YP_005839965.1| - 0.0075 16.0 0.0 0.015 15.1 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.21 gi|385803565|ref|YP_005839965.1| - 0.0076 15.9 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.22 gi|385803565|ref|YP_005839965.1| - 0.022 14.7 0.0 0.038 13.9 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|385803565|ref|YP_005839965.1| - 0.023 15.2 0.0 0.036 14.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_10 PF04967.12 gi|385803565|ref|YP_005839965.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain NikR_C PF08753.11 gi|385803567|ref|YP_005839967.1| - 1.8e-19 69.7 0.2 3e-19 68.9 0.2 1.4 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|385803567|ref|YP_005839967.1| - 8.8e-06 25.5 0.1 1.3e-05 24.9 0.1 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|385803567|ref|YP_005839967.1| - 0.0094 16.1 0.0 0.017 15.2 0.0 1.5 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 gi|385803567|ref|YP_005839967.1| - 0.047 13.6 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Arc PF03869.14 gi|385803567|ref|YP_005839967.1| - 0.053 13.4 0.1 0.085 12.7 0.1 1.3 1 0 0 1 1 1 0 Arc-like DNA binding domain RHH_8 PF17723.1 gi|385803567|ref|YP_005839967.1| - 0.087 13.0 0.0 0.19 11.9 0.0 1.3 1 1 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family VapB_antitoxin PF09957.9 gi|385803567|ref|YP_005839967.1| - 0.11 12.4 0.0 0.25 11.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB cobW PF02492.19 gi|385803568|ref|YP_005839968.1| - 9.4e-50 168.6 0.0 1.2e-49 168.3 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 gi|385803568|ref|YP_005839968.1| - 3.9e-25 87.6 0.2 8.8e-25 86.5 0.2 1.6 1 1 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain GTP_EFTU PF00009.27 gi|385803568|ref|YP_005839968.1| - 1.3e-05 24.9 0.0 0.13 11.8 0.0 2.1 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|385803568|ref|YP_005839968.1| - 0.00075 19.4 0.4 0.3 11.0 0.1 2.3 2 0 0 2 2 2 2 RsgA GTPase T2SSE PF00437.20 gi|385803568|ref|YP_005839968.1| - 0.0055 15.8 0.1 0.0088 15.1 0.1 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein Zeta_toxin PF06414.12 gi|385803568|ref|YP_005839968.1| - 0.019 14.2 0.0 0.036 13.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin TrwB_AAD_bind PF10412.9 gi|385803568|ref|YP_005839968.1| - 0.044 12.7 0.0 0.092 11.6 0.0 1.4 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain CbiA PF01656.23 gi|385803568|ref|YP_005839968.1| - 0.047 13.7 0.0 0.11 12.6 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain ABC_tran PF00005.27 gi|385803568|ref|YP_005839968.1| - 0.099 13.2 0.0 0.2 12.2 0.0 1.4 1 0 0 1 1 1 0 ABC transporter TsaE PF02367.17 gi|385803568|ref|YP_005839968.1| - 0.11 12.5 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE cobW PF02492.19 gi|385803569|ref|YP_005839969.1| - 2.5e-48 164.0 0.1 3.2e-48 163.6 0.1 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 gi|385803569|ref|YP_005839969.1| - 2.9e-26 91.2 0.1 6.8e-26 90.0 0.1 1.7 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain RsgA_GTPase PF03193.16 gi|385803569|ref|YP_005839969.1| - 0.00022 21.2 0.1 0.3 11.0 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 gi|385803569|ref|YP_005839969.1| - 0.00026 20.6 0.0 0.21 11.1 0.0 2.4 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain T2SSE PF00437.20 gi|385803569|ref|YP_005839969.1| - 0.0022 17.1 0.3 0.0044 16.1 0.2 1.5 2 0 0 2 2 2 1 Type II/IV secretion system protein Zeta_toxin PF06414.12 gi|385803569|ref|YP_005839969.1| - 0.0033 16.7 0.0 0.0077 15.5 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin TsaE PF02367.17 gi|385803569|ref|YP_005839969.1| - 0.031 14.3 0.1 0.065 13.2 0.1 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_23 PF13476.6 gi|385803569|ref|YP_005839969.1| - 0.037 14.5 0.1 0.057 13.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|385803569|ref|YP_005839969.1| - 0.051 13.8 0.0 0.14 12.4 0.0 1.9 1 0 0 1 1 1 0 AAA domain MukB PF04310.12 gi|385803569|ref|YP_005839969.1| - 0.097 12.5 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal AAA_29 PF13555.6 gi|385803569|ref|YP_005839969.1| - 0.1 12.3 0.2 0.33 10.7 0.2 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|385803569|ref|YP_005839969.1| - 0.12 12.7 0.7 0.33 11.3 0.0 2.1 2 1 0 2 2 2 0 AAA ATPase domain MoCF_biosynth PF00994.24 gi|385803570|ref|YP_005839970.1| - 2.2e-29 102.0 0.3 2.8e-29 101.7 0.3 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain NifU_N PF01592.16 gi|385803571|ref|YP_005839971.1| - 1.2e-26 93.3 0.0 1.5e-26 93.0 0.0 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain Mac PF12464.8 gi|385803573|ref|YP_005839973.1| - 0.083 13.1 0.1 0.14 12.4 0.1 1.4 1 0 0 1 1 1 0 Maltose acetyltransferase Virulence_fact PF13769.6 gi|385803573|ref|YP_005839973.1| - 0.12 12.7 0.1 0.15 12.3 0.1 1.3 1 0 0 1 1 1 0 Virulence factor ZnuA PF01297.17 gi|385803574|ref|YP_005839974.1| - 1.1e-54 185.6 0.0 1.5e-54 185.2 0.0 1.2 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic ABC_tran PF00005.27 gi|385803575|ref|YP_005839975.1| - 4.6e-31 108.1 0.0 6.2e-31 107.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385803575|ref|YP_005839975.1| - 9.5e-11 42.0 0.1 5.8e-06 26.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385803575|ref|YP_005839975.1| - 7e-06 25.6 0.1 5.8e-05 22.6 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|385803575|ref|YP_005839975.1| - 6.9e-05 22.5 0.1 0.00013 21.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|385803575|ref|YP_005839975.1| - 0.0017 18.9 0.0 0.0022 18.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain YbjN PF10722.9 gi|385803575|ref|YP_005839975.1| - 0.0045 17.0 0.1 0.007 16.4 0.1 1.3 1 0 0 1 1 1 1 Putative bacterial sensory transduction regulator SbcCD_C PF13558.6 gi|385803575|ref|YP_005839975.1| - 0.0057 16.9 0.4 0.14 12.4 0.4 2.5 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.6 gi|385803575|ref|YP_005839975.1| - 0.016 14.9 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_16 PF13191.6 gi|385803575|ref|YP_005839975.1| - 0.043 14.2 0.2 0.083 13.3 0.2 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|385803575|ref|YP_005839975.1| - 0.087 13.0 0.1 0.31 11.2 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|385803575|ref|YP_005839975.1| - 0.093 12.3 0.7 0.93 9.0 0.7 2.3 1 1 0 1 1 1 0 AAA domain Peripla_BP_4 PF13407.6 gi|385803575|ref|YP_005839975.1| - 0.1 12.1 0.0 0.46 10.0 0.0 1.8 2 0 0 2 2 2 0 Periplasmic binding protein domain AAA_24 PF13479.6 gi|385803575|ref|YP_005839975.1| - 0.11 12.3 0.0 6 6.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|385803575|ref|YP_005839975.1| - 0.13 12.2 0.0 0.44 10.4 0.0 1.8 1 1 1 2 2 2 0 NTPase MobB PF03205.14 gi|385803575|ref|YP_005839975.1| - 0.14 12.0 0.0 3.3 7.6 0.0 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.6 gi|385803575|ref|YP_005839975.1| - 0.17 12.1 0.1 1 9.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain ABC-3 PF00950.17 gi|385803576|ref|YP_005839976.1| - 3.7e-57 193.8 43.3 4.4e-57 193.5 43.3 1.1 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|385803576|ref|YP_005839976.1| - 3.1e-05 23.1 41.1 3.1e-05 23.1 41.1 1.9 1 1 1 2 2 2 2 FecCD transport family HTH_Crp_2 PF13545.6 gi|385803577|ref|YP_005839977.1| - 4.1e-05 23.5 0.0 5.3e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|385803577|ref|YP_005839977.1| - 0.00048 20.0 0.1 0.00068 19.5 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_13 PF11972.8 gi|385803577|ref|YP_005839977.1| - 0.0044 17.0 0.0 0.008 16.2 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain FaeA PF04703.12 gi|385803577|ref|YP_005839977.1| - 0.0084 16.5 0.0 0.012 16.0 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein Replic_Relax PF13814.6 gi|385803577|ref|YP_005839977.1| - 0.016 15.3 0.0 0.019 15.0 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation Fe_dep_repress PF01325.19 gi|385803577|ref|YP_005839977.1| - 0.086 13.1 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Ribosomal_S25 PF03297.15 gi|385803577|ref|YP_005839977.1| - 0.12 12.6 0.0 0.15 12.3 0.0 1.2 1 0 0 1 1 1 0 S25 ribosomal protein HTH_11 PF08279.12 gi|385803577|ref|YP_005839977.1| - 0.12 12.3 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 HTH domain Sigma70_r4 PF04545.16 gi|385803577|ref|YP_005839977.1| - 0.17 11.4 0.0 0.31 10.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 PIN PF01850.21 gi|385803578|ref|YP_005839978.1| - 2.6e-06 27.9 0.2 3.3e-06 27.6 0.2 1.0 1 0 0 1 1 1 1 PIN domain zf-C2H2_4 PF13894.6 gi|385803579|ref|YP_005839979.1| - 4.7e-07 30.1 3.3 0.0028 18.4 0.3 2.1 2 0 0 2 2 2 2 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|385803579|ref|YP_005839979.1| - 7.2e-07 29.3 3.7 0.0059 17.0 0.4 2.1 2 0 0 2 2 2 2 Zinc finger, C2H2 type zf-C2H2_6 PF13912.6 gi|385803579|ref|YP_005839979.1| - 7.1e-05 22.7 4.4 0.051 13.6 0.1 2.2 2 1 0 2 2 2 2 C2H2-type zinc finger zf_UBZ PF18439.1 gi|385803579|ref|YP_005839979.1| - 0.00061 19.3 3.7 0.23 11.1 0.2 2.4 2 1 0 2 2 2 2 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 gi|385803579|ref|YP_005839979.1| - 0.00072 19.8 3.2 0.12 12.7 0.1 2.2 2 0 0 2 2 2 2 Zinc-finger double-stranded RNA-binding zf-C2H2_2 PF12756.7 gi|385803579|ref|YP_005839979.1| - 0.0018 18.6 4.2 0.24 11.7 0.8 2.0 1 1 1 2 2 2 2 C2H2 type zinc-finger (2 copies) DZR PF12773.7 gi|385803579|ref|YP_005839979.1| - 0.0037 17.3 1.2 0.0051 16.8 1.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-C2H2_9 PF16293.5 gi|385803579|ref|YP_005839979.1| - 0.0041 16.9 0.3 1.5 8.8 0.1 2.0 1 1 1 2 2 2 2 C2H2 type zinc-finger (1 copy) Zn-ribbon_8 PF09723.10 gi|385803579|ref|YP_005839979.1| - 0.0062 16.6 3.4 0.12 12.5 3.6 2.0 1 1 1 2 2 2 2 Zinc ribbon domain zf-LYAR PF08790.11 gi|385803579|ref|YP_005839979.1| - 0.013 15.4 4.8 0.76 9.7 0.2 2.2 2 0 0 2 2 2 0 LYAR-type C2HC zinc finger zf-3CxxC PF13695.6 gi|385803579|ref|YP_005839979.1| - 0.05 14.1 1.6 0.16 12.5 1.6 1.7 1 1 0 1 1 1 0 Zinc-binding domain Cript PF10235.9 gi|385803579|ref|YP_005839979.1| - 0.051 14.2 1.1 0.056 14.0 1.1 1.1 1 0 0 1 1 1 0 Microtubule-associated protein CRIPT zinc_ribbon_4 PF13717.6 gi|385803579|ref|YP_005839979.1| - 0.067 13.1 2.2 0.83 9.6 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-HC3 PF16827.5 gi|385803579|ref|YP_005839979.1| - 0.087 13.0 2.7 4.6 7.5 0.2 2.1 1 1 1 2 2 2 0 zinc-finger HNH_5 PF14279.6 gi|385803579|ref|YP_005839979.1| - 0.096 12.6 3.3 0.8 9.6 0.9 2.1 2 0 0 2 2 2 0 HNH endonuclease TFIIS_C PF01096.18 gi|385803579|ref|YP_005839979.1| - 0.11 12.4 2.8 2.4 8.1 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF629 PF04780.12 gi|385803579|ref|YP_005839979.1| - 0.12 10.8 6.9 1.2 7.6 0.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF629) zf_C2H2_ZHX PF18387.1 gi|385803579|ref|YP_005839979.1| - 0.16 11.6 7.5 1.4 8.6 1.6 2.0 1 1 1 2 2 2 0 Zinc-fingers and homeoboxes C2H2 finger domain Rubredoxin_2 PF18073.1 gi|385803579|ref|YP_005839979.1| - 0.16 11.7 2.8 0.34 10.7 0.3 2.0 2 0 0 2 2 2 0 Rubredoxin metal binding domain DNA_RNApol_7kD PF03604.13 gi|385803579|ref|YP_005839979.1| - 0.18 11.5 2.1 10 5.9 0.2 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Actin_micro PF17003.5 gi|385803579|ref|YP_005839979.1| - 0.25 10.5 5.3 1.1 8.4 3.9 1.9 1 1 0 1 1 1 0 Putative actin-like family DUF983 PF06170.12 gi|385803579|ref|YP_005839979.1| - 5 7.6 5.3 12 6.3 0.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF983) zf-H2C2_2 PF13465.6 gi|385803579|ref|YP_005839979.1| - 9.8 6.8 13.3 6.8 7.3 0.1 3.1 3 1 0 3 3 3 0 Zinc-finger double domain HTH_Crp_2 PF13545.6 gi|385803580|ref|YP_005839980.1| - 0.0039 17.1 0.0 0.0044 17.0 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|385803580|ref|YP_005839980.1| - 0.017 15.0 0.0 0.023 14.5 0.0 1.2 1 0 0 1 1 1 0 MarR family LacI PF00356.21 gi|385803580|ref|YP_005839980.1| - 0.068 13.0 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family TrmB PF01978.19 gi|385803580|ref|YP_005839980.1| - 0.07 13.0 0.0 0.094 12.6 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|385803580|ref|YP_005839980.1| - 0.096 12.6 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 HTH domain FAD_binding_3 PF01494.19 gi|385803581|ref|YP_005839981.1| - 1.3e-09 37.8 0.3 9.4e-09 35.0 0.3 1.9 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|385803581|ref|YP_005839981.1| - 0.00071 19.0 1.0 0.0029 17.0 1.0 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|385803581|ref|YP_005839981.1| - 0.0075 15.2 0.0 0.73 8.6 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Abhydrolase_6 PF12697.7 gi|385803581|ref|YP_005839981.1| - 0.011 16.4 3.7 0.65 10.6 0.0 2.4 2 1 0 2 2 2 0 Alpha/beta hydrolase family DAO PF01266.24 gi|385803581|ref|YP_005839981.1| - 0.017 14.7 1.5 0.042 13.4 0.3 1.9 1 1 0 2 2 2 0 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|385803581|ref|YP_005839981.1| - 0.07 13.7 0.2 0.39 11.3 0.3 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|385803581|ref|YP_005839981.1| - 0.19 11.0 0.1 0.32 10.2 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.24 gi|385803581|ref|YP_005839981.1| - 0.29 10.2 2.1 4.6 6.2 1.3 2.3 1 1 1 2 2 2 0 FAD binding domain DUF4010 PF13194.6 gi|385803582|ref|YP_005839982.1| - 4.4e-65 219.3 20.6 4.4e-65 219.3 20.6 2.5 2 1 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|385803582|ref|YP_005839982.1| - 1.6e-12 47.8 8.5 1.6e-12 47.8 8.5 3.9 2 1 0 3 3 3 1 MgtC family MFS_1 PF07690.16 gi|385803584|ref|YP_005839984.1| - 1.1e-29 103.5 48.8 1.1e-29 103.5 48.8 1.5 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|385803584|ref|YP_005839984.1| - 0.0054 15.6 0.2 0.0054 15.6 0.2 3.6 2 1 2 4 4 4 2 MFS_1 like family ESSS PF10183.9 gi|385803584|ref|YP_005839984.1| - 0.031 14.5 0.1 0.13 12.5 0.1 2.1 1 0 0 1 1 1 0 ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) Molybdopterin PF00384.22 gi|385803585|ref|YP_005839985.1| - 5.4e-63 213.5 0.0 6.7e-63 213.1 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|385803585|ref|YP_005839985.1| - 1.3e-15 57.4 0.1 3.4e-15 56.0 0.1 1.8 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|385803585|ref|YP_005839985.1| - 2.7e-08 33.7 2.2 6.9e-08 32.4 2.2 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain DUF3772 PF12607.8 gi|385803585|ref|YP_005839985.1| - 0.042 13.6 0.5 0.096 12.5 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3772) NIR_SIR PF01077.22 gi|385803586|ref|YP_005839986.1| - 1.8e-45 154.3 0.1 2.2e-31 108.5 0.0 2.5 3 0 0 3 3 3 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|385803586|ref|YP_005839986.1| - 4.4e-32 109.7 0.1 4.1e-15 55.4 0.0 3.1 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain DGC PF08859.11 gi|385803586|ref|YP_005839986.1| - 0.09 12.9 0.0 1 9.5 0.0 2.3 2 0 0 2 2 2 0 DGC domain Molybdopterin PF00384.22 gi|385803587|ref|YP_005839987.1| - 1.7e-58 198.6 0.0 2.1e-58 198.3 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|385803587|ref|YP_005839987.1| - 8.6e-12 45.1 0.3 4e-11 42.9 0.3 2.1 1 1 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|385803587|ref|YP_005839987.1| - 1.6e-07 31.2 0.7 3.9e-07 29.9 0.7 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Acetyltransf_1 PF00583.25 gi|385803590|ref|YP_005839990.1| - 0.00014 22.1 0.1 0.00029 21.1 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|385803590|ref|YP_005839990.1| - 0.00017 21.5 0.0 0.0004 20.3 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|385803590|ref|YP_005839990.1| - 0.0059 17.0 0.0 0.012 16.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|385803590|ref|YP_005839990.1| - 0.031 14.4 0.0 0.058 13.5 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Zip PF02535.22 gi|385803592|ref|YP_005839992.1| - 6.9e-07 28.8 23.5 2.9e-06 26.7 16.5 2.1 2 0 0 2 2 2 2 ZIP Zinc transporter SnoaL_2 PF12680.7 gi|385803593|ref|YP_005839993.1| - 9.8e-05 22.9 0.1 0.00012 22.7 0.1 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_4 PF13577.6 gi|385803593|ref|YP_005839993.1| - 0.00052 20.1 0.2 0.00078 19.6 0.2 1.5 1 1 0 1 1 1 1 SnoaL-like domain NTF2 PF02136.20 gi|385803593|ref|YP_005839993.1| - 0.036 14.6 0.0 0.047 14.3 0.0 1.3 1 1 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain NikR_C PF08753.11 gi|385803596|ref|YP_005839996.1| - 5.2e-21 74.6 2.7 8e-21 74.0 2.7 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|385803596|ref|YP_005839996.1| - 1.4e-07 31.2 0.0 2.3e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|385803596|ref|YP_005839996.1| - 0.0059 16.7 0.0 0.014 15.5 0.0 1.6 2 0 0 2 2 2 1 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 gi|385803596|ref|YP_005839996.1| - 0.015 15.2 0.0 0.03 14.2 0.0 1.4 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 RHH_8 PF17723.1 gi|385803596|ref|YP_005839996.1| - 0.025 14.8 0.0 0.036 14.3 0.0 1.2 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family LPG_synthase_TM PF03706.13 gi|385803597|ref|YP_005839997.1| - 4.4e-41 141.4 43.6 5.8e-41 141.0 43.6 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region AIM24 PF01987.17 gi|385803598|ref|YP_005839998.1| - 5.9e-50 169.9 0.2 6.7e-50 169.7 0.2 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 HxlR PF01638.17 gi|385803600|ref|YP_005840000.1| - 2.7e-23 81.6 0.0 3.2e-23 81.4 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.22 gi|385803600|ref|YP_005840000.1| - 0.04 13.8 0.0 0.058 13.3 0.0 1.3 1 0 0 1 1 1 0 MarR family Isochorismatase PF00857.20 gi|385803601|ref|YP_005840001.1| - 5.2e-33 114.7 0.1 6.9e-33 114.3 0.1 1.2 1 0 0 1 1 1 1 Isochorismatase family DUF4639 PF15479.6 gi|385803601|ref|YP_005840001.1| - 0.041 12.8 0.1 0.044 12.7 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4639) Pentapeptide PF00805.22 gi|385803603|ref|YP_005840003.1| - 1e-65 216.8 41.2 5.2e-14 51.5 1.4 4.2 1 1 5 6 6 6 6 Pentapeptide repeats (8 copies) Pentapeptide_3 PF13576.6 gi|385803603|ref|YP_005840003.1| - 2.2e-23 82.1 0.0 1.3e-05 25.2 0.0 4.0 1 1 4 5 5 5 5 Pentapeptide repeats (9 copies) Pentapeptide_4 PF13599.6 gi|385803603|ref|YP_005840003.1| - 2.5e-16 59.6 0.0 2.4e-08 34.0 0.0 2.2 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) DNA_ligase_OB PF03120.16 gi|385803603|ref|YP_005840003.1| - 0.0003 20.6 0.1 5.7 6.9 0.0 4.5 1 1 5 6 6 6 2 NAD-dependent DNA ligase OB-fold domain DUF2406 PF10295.9 gi|385803603|ref|YP_005840003.1| - 0.02 15.6 0.1 10 6.9 0.0 3.5 1 1 1 2 2 2 0 Uncharacterised protein (DUF2406) Methyltransf_12 PF08242.12 gi|385803603|ref|YP_005840003.1| - 0.035 14.8 0.5 4.6 8.0 0.0 2.4 1 1 1 2 2 2 0 Methyltransferase domain Ldl_recept_b PF00058.17 gi|385803603|ref|YP_005840003.1| - 0.41 11.2 3.0 15 6.2 0.3 3.4 2 1 1 3 3 3 0 Low-density lipoprotein receptor repeat class B DLP_helical PF18709.1 gi|385803604|ref|YP_005840004.1| - 0.16 11.1 0.8 0.21 10.8 0.1 1.4 2 0 0 2 2 2 0 Dynamin-like helical domain Multi_Drug_Res PF00893.19 gi|385803605|ref|YP_005840005.1| - 3.4e-26 91.7 5.1 4.3e-26 91.4 5.1 1.2 1 0 0 1 1 1 1 Small Multidrug Resistance protein MFS_1 PF07690.16 gi|385803606|ref|YP_005840006.1| - 3.6e-25 88.6 64.2 1.1e-19 70.6 31.8 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Mrr_cat PF04471.12 gi|385803607|ref|YP_005840007.1| - 3e-27 94.9 0.0 5.5e-27 94.1 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat_2 PF13156.6 gi|385803607|ref|YP_005840007.1| - 0.0015 18.4 0.0 0.005 16.7 0.0 1.8 2 0 0 2 2 2 1 Restriction endonuclease DZR PF12773.7 gi|385803607|ref|YP_005840007.1| - 0.011 15.8 0.3 0.011 15.8 0.3 1.8 2 0 0 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|385803607|ref|YP_005840007.1| - 0.04 13.6 2.4 0.1 12.4 2.4 1.7 1 0 0 1 1 1 0 zinc-ribbon domain Siva PF05458.12 gi|385803607|ref|YP_005840007.1| - 0.044 13.5 1.0 0.065 12.9 1.0 1.2 1 0 0 1 1 1 0 Cd27 binding protein (Siva) zinc_ribbon_15 PF17032.5 gi|385803607|ref|YP_005840007.1| - 0.047 14.4 0.3 0.047 14.4 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon family DUF3797 PF12677.7 gi|385803607|ref|YP_005840007.1| - 0.055 13.4 0.4 0.17 11.8 0.4 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3797) zf-ribbon_3 PF13248.6 gi|385803607|ref|YP_005840007.1| - 0.073 12.5 2.3 0.17 11.3 2.3 1.6 1 0 0 1 1 1 0 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|385803607|ref|YP_005840007.1| - 0.54 10.5 5.8 1.2 9.3 5.7 1.7 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like AA_permease_2 PF13520.6 gi|385803608|ref|YP_005840008.1| - 3.4e-45 154.7 44.4 4.2e-45 154.3 44.4 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|385803608|ref|YP_005840008.1| - 3.6e-37 128.1 41.6 4.5e-37 127.8 41.6 1.1 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|385803608|ref|YP_005840008.1| - 1.3e-08 34.1 13.0 1.3e-08 34.1 13.0 3.2 3 1 0 3 3 3 2 Spore germination protein AA_permease_C PF13906.6 gi|385803608|ref|YP_005840008.1| - 0.022 14.8 2.1 0.022 14.8 2.1 2.7 3 0 0 3 3 3 0 C-terminus of AA_permease Usp PF00582.26 gi|385803609|ref|YP_005840009.1| - 0.0013 19.3 0.8 0.69 10.4 0.2 2.7 1 1 1 2 2 2 2 Universal stress protein family Usp PF00582.26 gi|385803610|ref|YP_005840010.1| - 2.2e-11 44.4 3.5 2.6e-09 37.7 0.3 2.5 2 1 0 2 2 2 2 Universal stress protein family Meth_synt_2 PF01717.18 gi|385803611|ref|YP_005840011.1| - 4e-160 532.4 0.0 1.4e-149 497.8 0.0 2.3 2 0 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|385803611|ref|YP_005840011.1| - 1.9e-131 438.3 0.0 4.8e-121 404.1 0.0 3.0 3 0 0 3 3 3 3 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.17 gi|385803611|ref|YP_005840011.1| - 0.0024 17.1 0.3 0.56 9.3 0.0 2.5 3 0 0 3 3 3 2 Uroporphyrinogen decarboxylase (URO-D) OCD_Mu_crystall PF02423.15 gi|385803612|ref|YP_005840012.1| - 4.5e-56 190.1 4.5 5.2e-56 189.9 4.5 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|385803612|ref|YP_005840012.1| - 0.014 15.4 0.0 0.032 14.3 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Zip PF02535.22 gi|385803613|ref|YP_005840013.1| - 8.3e-16 58.1 19.9 1.1e-13 51.2 19.8 2.8 1 1 0 1 1 1 1 ZIP Zinc transporter Hydantoinase_B PF02538.14 gi|385803615|ref|YP_005840015.1| - 4.2e-214 711.7 1.2 4.9e-214 711.5 1.2 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase DUF4998 PF16389.5 gi|385803615|ref|YP_005840015.1| - 0.0066 16.1 0.1 0.012 15.2 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function Hydantoinase_A PF01968.18 gi|385803616|ref|YP_005840016.1| - 3.2e-102 341.7 11.5 5.3e-101 337.7 1.3 2.5 3 0 0 3 3 3 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|385803616|ref|YP_005840016.1| - 5.8e-54 182.5 5.0 9.9e-54 181.7 1.0 2.5 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|385803616|ref|YP_005840016.1| - 0.0028 16.3 8.9 0.052 12.1 0.6 3.0 3 0 0 3 3 3 2 MutL protein BcrAD_BadFG PF01869.20 gi|385803616|ref|YP_005840016.1| - 0.0058 16.2 0.3 0.38 10.2 0.1 2.3 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.6 gi|385803616|ref|YP_005840016.1| - 0.016 15.6 3.6 0.17 12.3 0.2 2.8 2 0 0 2 2 2 0 Cell division protein FtsA Lipid_DES PF08557.10 gi|385803616|ref|YP_005840016.1| - 0.12 11.8 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 Sphingolipid Delta4-desaturase (DES) ABC_tran PF00005.27 gi|385803618|ref|YP_005840018.1| - 7.6e-35 120.4 0.0 1.1e-34 119.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|385803618|ref|YP_005840018.1| - 1.7e-10 40.9 0.9 7.8e-10 38.8 0.2 2.4 2 0 0 2 2 2 1 TOBE domain CysA_C_terminal PF17850.1 gi|385803618|ref|YP_005840018.1| - 1.4e-05 25.6 0.2 4.8e-05 23.8 0.1 2.1 2 0 0 2 2 2 1 CysA C-terminal regulatory domain AAA_21 PF13304.6 gi|385803618|ref|YP_005840018.1| - 1.9e-05 24.7 0.1 0.055 13.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|385803618|ref|YP_005840018.1| - 0.0059 16.5 0.0 0.0096 15.9 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|385803618|ref|YP_005840018.1| - 0.0063 16.9 0.3 0.014 15.8 0.3 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|385803618|ref|YP_005840018.1| - 0.012 16.0 1.5 0.069 13.6 1.5 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|385803618|ref|YP_005840018.1| - 0.026 14.8 0.8 0.056 13.7 0.6 1.8 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|385803618|ref|YP_005840018.1| - 0.038 14.2 0.0 0.079 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 gi|385803618|ref|YP_005840018.1| - 0.044 13.5 0.1 0.19 11.4 0.1 1.9 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_25 PF13481.6 gi|385803618|ref|YP_005840018.1| - 0.052 13.1 0.0 0.12 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|385803618|ref|YP_005840018.1| - 0.058 12.8 0.1 2.2 7.7 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|385803618|ref|YP_005840018.1| - 0.12 12.1 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|385803618|ref|YP_005840018.1| - 0.17 11.6 0.1 0.36 10.5 0.1 1.5 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|385803619|ref|YP_005840019.1| - 2.4e-09 37.2 12.8 2.4e-09 37.2 12.8 2.6 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|385803620|ref|YP_005840020.1| - 9.4e-13 48.3 19.9 9.4e-13 48.3 19.9 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_6 PF13343.6 gi|385803621|ref|YP_005840021.1| - 3.1e-15 56.2 0.1 5e-15 55.6 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|385803621|ref|YP_005840021.1| - 2.2e-10 41.0 4.5 3.2e-10 40.5 3.9 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|385803621|ref|YP_005840021.1| - 1.2e-07 31.7 0.1 2.8e-07 30.5 0.1 1.6 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein Como_LCP PF02247.16 gi|385803621|ref|YP_005840021.1| - 0.11 11.1 0.0 0.17 10.4 0.0 1.2 1 0 0 1 1 1 0 Large coat protein DUF2946 PF11162.8 gi|385803621|ref|YP_005840021.1| - 0.17 12.6 1.2 0.22 12.2 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2946) MOSC_N PF03476.16 gi|385803622|ref|YP_005840022.1| - 3.9e-12 46.1 0.0 9.2e-12 44.9 0.0 1.6 1 1 0 1 1 1 1 MOSC N-terminal beta barrel domain MOSC PF03473.17 gi|385803622|ref|YP_005840022.1| - 6.5e-05 23.0 0.0 0.00013 21.9 0.0 1.6 1 1 0 1 1 1 1 MOSC domain E1-E2_ATPase PF00122.20 gi|385803625|ref|YP_005840025.1| - 9e-54 181.7 1.9 2e-53 180.6 1.9 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|385803625|ref|YP_005840025.1| - 8.5e-44 150.4 1.7 1.6e-43 149.4 1.7 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|385803625|ref|YP_005840025.1| - 3.7e-25 88.2 3.6 6.6e-12 45.7 0.0 4.2 5 0 0 5 5 5 2 Heavy-metal-associated domain HAD PF12710.7 gi|385803625|ref|YP_005840025.1| - 0.00075 19.9 0.0 0.0019 18.6 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|385803625|ref|YP_005840025.1| - 0.0075 16.0 2.0 0.15 11.8 0.5 2.5 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Fer2_BFD PF04324.15 gi|385803625|ref|YP_005840025.1| - 0.0083 16.5 0.4 0.62 10.5 0.0 3.6 3 0 0 3 3 3 1 BFD-like [2Fe-2S] binding domain Pox_A14 PF05767.12 gi|385803625|ref|YP_005840025.1| - 0.049 13.8 0.5 0.15 12.3 0.5 1.9 1 0 0 1 1 1 0 Poxvirus virion envelope protein A14 zf-LITAF-like PF10601.9 gi|385803625|ref|YP_005840025.1| - 0.35 11.1 0.1 0.35 11.1 0.1 3.1 3 0 0 3 3 3 0 LITAF-like zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|385803625|ref|YP_005840025.1| - 4.2 7.5 6.0 8.9 6.4 0.0 3.1 4 0 0 4 4 4 0 NAD-dependent DNA ligase C4 zinc finger domain DUF4385 PF14328.6 gi|385803627|ref|YP_005840027.1| - 1.3e-56 190.8 4.7 1.4e-56 190.6 4.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4385) Transglut_core PF01841.19 gi|385803628|ref|YP_005840028.1| - 3.6e-27 95.0 0.2 1.4e-26 93.1 0.0 2.1 3 0 0 3 3 3 1 Transglutaminase-like superfamily DUF3488 PF11992.8 gi|385803628|ref|YP_005840028.1| - 1.5e-06 27.4 2.1 2.5e-06 26.7 2.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3488) DUF4129 PF13559.6 gi|385803628|ref|YP_005840028.1| - 7.8e-05 22.9 0.0 0.00022 21.4 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) Transglut_core3 PF13471.6 gi|385803628|ref|YP_005840028.1| - 0.0094 15.9 0.0 0.027 14.4 0.0 1.7 1 0 0 1 1 1 1 Transglutaminase-like superfamily YtpI PF14007.6 gi|385803628|ref|YP_005840028.1| - 0.038 14.1 0.3 0.083 13.0 0.3 1.5 1 0 0 1 1 1 0 YtpI-like protein X PF00739.19 gi|385803628|ref|YP_005840028.1| - 0.56 10.3 2.5 31 4.7 2.1 2.6 2 0 0 2 2 2 0 Trans-activation protein X DUF4456 PF14644.6 gi|385803629|ref|YP_005840029.1| - 0.0061 16.3 0.1 0.024 14.3 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4456) DUF58 PF01882.18 gi|385803630|ref|YP_005840030.1| - 4e-16 59.1 0.0 1.1e-15 57.7 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|385803630|ref|YP_005840030.1| - 3.8e-05 23.9 4.1 5.5e-05 23.4 0.8 2.7 2 1 1 3 3 3 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|385803630|ref|YP_005840030.1| - 0.0003 21.0 0.2 0.0013 19.0 0.1 2.2 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.14 gi|385803630|ref|YP_005840030.1| - 0.0048 16.3 0.0 0.0088 15.4 0.0 1.4 1 0 0 1 1 1 1 Translocon-associated protein beta (TRAPB) CARDB PF07705.11 gi|385803630|ref|YP_005840030.1| - 0.041 14.1 0.1 0.18 12.1 0.0 2.1 1 1 1 2 2 2 0 CARDB AAA_3 PF07726.11 gi|385803632|ref|YP_005840032.1| - 4.1e-65 217.5 0.1 6.7e-65 216.9 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|385803632|ref|YP_005840032.1| - 6.1e-17 61.2 0.4 1.1e-16 60.4 0.4 1.4 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|385803632|ref|YP_005840032.1| - 5.4e-14 52.4 0.0 1.3e-13 51.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|385803632|ref|YP_005840032.1| - 3.3e-05 23.6 0.0 0.00012 21.8 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.29 gi|385803632|ref|YP_005840032.1| - 4.2e-05 24.0 0.0 0.00017 22.0 0.0 2.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|385803632|ref|YP_005840032.1| - 0.00019 20.6 0.0 0.00027 20.1 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 gi|385803632|ref|YP_005840032.1| - 0.047 13.4 0.0 0.72 9.6 0.0 2.2 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Phage_holin_2_2 PF10746.9 gi|385803633|ref|YP_005840033.1| - 0.028 14.1 0.6 0.056 13.1 0.5 1.7 1 1 0 1 1 1 0 Phage holin T7 family, holin superfamily II DUF3225 PF11533.8 gi|385803634|ref|YP_005840034.1| - 0.0026 17.4 0.0 0.0034 17.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3225) SnoaL_3 PF13474.6 gi|385803634|ref|YP_005840034.1| - 0.0044 17.3 0.3 0.0054 17.0 0.3 1.1 1 0 0 1 1 1 1 SnoaL-like domain NTF2 PF02136.20 gi|385803634|ref|YP_005840034.1| - 0.048 14.2 0.0 0.063 13.8 0.0 1.2 1 1 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain Coat_X PF07552.11 gi|385803634|ref|YP_005840034.1| - 0.12 12.2 2.3 0.2 11.5 0.4 2.0 1 1 1 2 2 2 0 Spore Coat Protein X and V domain bPH_2 PF03703.14 gi|385803635|ref|YP_005840035.1| - 8.7e-14 51.5 0.9 1.5e-13 50.7 0.4 1.7 2 0 0 2 2 2 1 Bacterial PH domain bPH_2 PF03703.14 gi|385803636|ref|YP_005840036.1| - 1.2e-17 63.8 0.0 2.3e-17 62.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial PH domain HTH_45 PF14947.6 gi|385803637|ref|YP_005840037.1| - 6.6e-05 22.8 0.0 0.00012 22.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|385803637|ref|YP_005840037.1| - 0.0076 16.1 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Mrr_N PF14338.6 gi|385803637|ref|YP_005840037.1| - 0.011 15.8 0.0 0.086 13.0 0.0 2.4 1 1 0 1 1 1 0 Mrr N-terminal domain HTH_27 PF13463.6 gi|385803637|ref|YP_005840037.1| - 0.018 15.5 0.1 0.1 13.1 0.0 2.2 2 1 0 2 2 2 0 Winged helix DNA-binding domain YrzK PF17449.2 gi|385803637|ref|YP_005840037.1| - 0.11 12.8 0.0 0.23 11.8 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized YrzK-like Putative_PNPOx PF01243.20 gi|385803638|ref|YP_005840038.1| - 4e-13 49.4 0.1 6.3e-13 48.7 0.1 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|385803638|ref|YP_005840038.1| - 0.00017 21.6 0.0 0.00022 21.2 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF2255 PF10012.9 gi|385803638|ref|YP_005840038.1| - 0.012 15.7 0.1 0.019 15.1 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2255) Pyrid_ox_like PF16242.5 gi|385803638|ref|YP_005840038.1| - 0.023 14.3 0.1 0.03 13.9 0.1 1.1 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase like DUF5462 PF17547.2 gi|385803638|ref|YP_005840038.1| - 0.095 12.1 0.2 0.13 11.6 0.2 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5462) Pyrid_oxidase_2 PF13883.6 gi|385803638|ref|YP_005840038.1| - 0.13 12.2 0.1 0.17 11.8 0.1 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase Acetyltransf_1 PF00583.25 gi|385803639|ref|YP_005840039.1| - 8.3e-07 29.3 0.0 1.1e-06 28.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|385803639|ref|YP_005840039.1| - 0.0014 19.0 0.0 0.0031 17.9 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|385803639|ref|YP_005840039.1| - 0.1 12.5 0.0 1.7 8.6 0.0 2.0 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain DUF21 PF01595.20 gi|385803640|ref|YP_005840040.1| - 1.9e-25 89.6 0.1 2.7e-25 89.1 0.1 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CBS PF00571.28 gi|385803640|ref|YP_005840040.1| - 2.4e-09 37.5 0.1 3e-07 30.8 0.1 2.4 2 0 0 2 2 2 2 CBS domain Sigma70_r3 PF04539.16 gi|385803640|ref|YP_005840040.1| - 0.049 13.7 0.2 0.049 13.7 0.2 1.9 2 0 0 2 2 2 0 Sigma-70 region 3 Hydrolase_6 PF13344.6 gi|385803641|ref|YP_005840041.1| - 3.4e-26 91.3 0.0 8.2e-26 90.1 0.0 1.7 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|385803641|ref|YP_005840041.1| - 1.3e-21 76.4 0.0 3.2e-21 75.2 0.0 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|385803641|ref|YP_005840041.1| - 1.1e-09 38.9 0.1 2.6e-09 37.7 0.1 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|385803641|ref|YP_005840041.1| - 2.8e-07 30.8 0.0 9.5e-06 25.8 0.0 2.3 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Peptidase_S9 PF00326.21 gi|385803642|ref|YP_005840042.1| - 2.4e-43 148.1 0.1 3.6e-43 147.5 0.1 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S9_N PF02897.15 gi|385803642|ref|YP_005840042.1| - 2.3e-06 26.7 0.0 2.3e-06 26.7 0.0 1.5 2 0 0 2 2 2 1 Prolyl oligopeptidase, N-terminal beta-propeller domain PD40 PF07676.12 gi|385803642|ref|YP_005840042.1| - 6.8e-06 25.9 1.5 0.37 10.8 0.0 5.3 5 0 0 5 5 5 1 WD40-like Beta Propeller Repeat Peptidase_S15 PF02129.18 gi|385803642|ref|YP_005840042.1| - 6.3e-05 22.7 0.1 0.43 10.1 0.3 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Pectate_lyase22 PF14583.6 gi|385803642|ref|YP_005840042.1| - 0.00016 20.5 0.2 0.017 13.8 0.1 2.4 2 0 0 2 2 2 1 Oligogalacturonate lyase Abhydrolase_1 PF00561.20 gi|385803642|ref|YP_005840042.1| - 0.00017 21.3 0.1 0.12 12.0 0.1 2.3 2 0 0 2 2 2 2 alpha/beta hydrolase fold Peptidase_S28 PF05577.12 gi|385803642|ref|YP_005840042.1| - 0.00033 19.6 0.0 0.00059 18.7 0.0 1.3 1 0 0 1 1 1 1 Serine carboxypeptidase S28 Hydrolase_4 PF12146.8 gi|385803642|ref|YP_005840042.1| - 0.0008 18.7 0.0 0.13 11.5 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DPPIV_N PF00930.21 gi|385803642|ref|YP_005840042.1| - 0.00092 18.1 0.0 1.6 7.4 0.0 3.1 2 1 1 3 3 3 3 Dipeptidyl peptidase IV (DPP IV) N-terminal region DUF5050 PF16472.5 gi|385803642|ref|YP_005840042.1| - 0.0019 17.5 0.0 0.026 13.8 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF5050) Esterase PF00756.20 gi|385803642|ref|YP_005840042.1| - 0.025 14.2 0.0 0.091 12.4 0.0 2.1 2 0 0 2 2 2 0 Putative esterase Abhydrolase_2 PF02230.16 gi|385803642|ref|YP_005840042.1| - 0.026 14.4 0.0 0.37 10.6 0.0 2.3 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Kelch_4 PF13418.6 gi|385803642|ref|YP_005840042.1| - 0.041 13.9 0.1 16 5.6 0.0 2.7 2 0 0 2 2 2 0 Galactose oxidase, central domain DUF2920 PF11144.8 gi|385803642|ref|YP_005840042.1| - 0.2 10.8 0.0 0.31 10.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2920) YqcI_YcgG PF08892.11 gi|385803644|ref|YP_005840044.1| - 4.3e-76 255.5 0.0 4.9e-76 255.2 0.0 1.0 1 0 0 1 1 1 1 YqcI/YcgG family Isochorismatase PF00857.20 gi|385803645|ref|YP_005840045.1| - 5.3e-33 114.7 0.0 6.2e-33 114.4 0.0 1.1 1 0 0 1 1 1 1 Isochorismatase family AIM24 PF01987.17 gi|385803646|ref|YP_005840046.1| - 8.5e-20 71.4 0.0 9.5e-20 71.2 0.0 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 LTD PF00932.19 gi|385803646|ref|YP_005840046.1| - 0.024 15.0 0.2 0.037 14.4 0.2 1.6 1 1 0 1 1 1 0 Lamin Tail Domain DDE_Tnp_IS66 PF03050.14 gi|385803648|ref|YP_005840048.1| - 1.9e-48 165.4 2.0 1.9e-48 165.3 0.0 1.7 2 0 0 2 2 2 1 Transposase IS66 family ZapB PF06005.12 gi|385803648|ref|YP_005840048.1| - 5.5e-10 39.5 6.1 2.2e-09 37.6 6.1 2.0 1 0 0 1 1 1 1 Cell division protein ZapB zf-IS66 PF13005.7 gi|385803648|ref|YP_005840048.1| - 1.1e-05 25.8 4.7 2.8e-05 24.4 4.7 1.7 1 0 0 1 1 1 1 zinc-finger binding domain of transposase IS66 YabA PF06156.13 gi|385803648|ref|YP_005840048.1| - 3.4e-05 24.4 3.4 9.9e-05 22.9 3.4 1.7 1 0 0 1 1 1 1 Initiation control protein YabA CASP_C PF08172.12 gi|385803648|ref|YP_005840048.1| - 0.00039 19.8 1.1 0.0007 19.0 1.1 1.3 1 0 0 1 1 1 1 CASP C terminal bZIP_1 PF00170.21 gi|385803648|ref|YP_005840048.1| - 0.00059 19.9 7.6 0.0012 18.9 7.6 1.5 1 0 0 1 1 1 1 bZIP transcription factor SlyX PF04102.12 gi|385803648|ref|YP_005840048.1| - 0.00097 19.7 3.4 0.0027 18.3 3.4 1.8 1 0 0 1 1 1 1 SlyX ATG16 PF08614.11 gi|385803648|ref|YP_005840048.1| - 0.0012 19.1 3.1 0.003 17.8 3.1 1.7 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) Cnn_1N PF07989.11 gi|385803648|ref|YP_005840048.1| - 0.0039 17.3 6.4 0.009 16.2 6.4 1.6 1 0 0 1 1 1 1 Centrosomin N-terminal motif 1 JIP_LZII PF16471.5 gi|385803648|ref|YP_005840048.1| - 0.007 16.5 2.9 0.018 15.2 2.9 1.7 1 0 0 1 1 1 1 JNK-interacting protein leucine zipper II NRBF2 PF08961.10 gi|385803648|ref|YP_005840048.1| - 0.0078 15.8 7.6 0.016 14.9 7.6 1.4 1 0 0 1 1 1 1 Nuclear receptor-binding factor 2, autophagy regulator GAS PF13851.6 gi|385803648|ref|YP_005840048.1| - 0.01 15.2 6.7 0.019 14.3 6.7 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding TSC22 PF01166.18 gi|385803648|ref|YP_005840048.1| - 0.012 16.0 6.7 0.012 16.0 6.7 3.3 2 1 1 3 3 3 0 TSC-22/dip/bun family DDE_Tnp_IS240 PF13610.6 gi|385803648|ref|YP_005840048.1| - 0.013 15.7 1.1 0.06 13.6 0.0 2.2 2 1 0 2 2 2 0 DDE domain DivIC PF04977.15 gi|385803648|ref|YP_005840048.1| - 0.018 14.8 4.3 0.018 14.8 4.3 2.1 2 0 0 2 2 1 0 Septum formation initiator CCDC106 PF15794.5 gi|385803648|ref|YP_005840048.1| - 0.023 14.4 2.6 0.045 13.4 2.6 1.4 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 106 HSBP1 PF06825.12 gi|385803648|ref|YP_005840048.1| - 0.028 14.3 0.4 0.054 13.4 0.4 1.4 1 0 0 1 1 1 0 Heat shock factor binding protein 1 DUF4201 PF13870.6 gi|385803648|ref|YP_005840048.1| - 0.028 14.1 4.8 0.047 13.4 4.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) CENP-H PF05837.12 gi|385803648|ref|YP_005840048.1| - 0.032 14.6 1.9 0.032 14.6 1.9 1.8 2 0 0 2 2 1 0 Centromere protein H (CENP-H) Ead_Ea22 PF13935.6 gi|385803648|ref|YP_005840048.1| - 0.036 14.7 1.4 0.17 12.5 0.2 2.5 2 0 0 2 2 2 0 Ead/Ea22-like protein eIF-3c_N PF05470.12 gi|385803648|ref|YP_005840048.1| - 0.046 12.0 0.1 0.048 12.0 0.1 1.1 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit 8 N-terminus Taxilin PF09728.9 gi|385803648|ref|YP_005840048.1| - 0.05 12.8 5.1 0.078 12.1 5.1 1.3 1 0 0 1 1 1 0 Myosin-like coiled-coil protein Synaptobrevin PF00957.21 gi|385803648|ref|YP_005840048.1| - 0.071 12.9 1.9 0.12 12.1 1.9 1.3 1 0 0 1 1 1 0 Synaptobrevin TMF_DNA_bd PF12329.8 gi|385803648|ref|YP_005840048.1| - 0.076 13.0 6.4 0.17 11.9 6.4 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Med21 PF11221.8 gi|385803648|ref|YP_005840048.1| - 0.1 12.8 4.4 0.29 11.4 4.4 1.7 1 0 0 1 1 1 0 Subunit 21 of Mediator complex V_ATPase_I PF01496.19 gi|385803648|ref|YP_005840048.1| - 0.11 10.4 1.0 0.15 9.9 1.0 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Jnk-SapK_ap_N PF09744.9 gi|385803648|ref|YP_005840048.1| - 0.12 12.6 5.8 0.37 11.0 5.8 1.8 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 ADIP PF11559.8 gi|385803648|ref|YP_005840048.1| - 0.13 12.3 7.1 0.27 11.3 7.1 1.4 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Spc24 PF08286.11 gi|385803648|ref|YP_005840048.1| - 0.17 12.2 2.3 0.38 11.0 2.3 1.6 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 Fmp27_WPPW PF10359.9 gi|385803648|ref|YP_005840048.1| - 0.3 9.9 1.6 0.42 9.4 1.6 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Wtap PF17098.5 gi|385803648|ref|YP_005840048.1| - 0.32 10.9 5.2 0.55 10.1 5.2 1.4 1 0 0 1 1 1 0 WTAP/Mum2p family Sipho_Gp157 PF05565.11 gi|385803648|ref|YP_005840048.1| - 0.38 10.7 5.4 0.7 9.9 5.4 1.4 1 0 0 1 1 1 0 Siphovirus Gp157 UPF0449 PF15136.6 gi|385803648|ref|YP_005840048.1| - 0.45 11.0 9.3 13 6.3 5.0 2.7 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 HALZ PF02183.18 gi|385803648|ref|YP_005840048.1| - 0.48 10.7 9.1 2.6 8.4 6.2 2.5 2 0 0 2 2 2 0 Homeobox associated leucine zipper FlaC_arch PF05377.11 gi|385803648|ref|YP_005840048.1| - 0.49 10.8 3.5 1.2 9.6 3.5 1.7 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) Atg14 PF10186.9 gi|385803648|ref|YP_005840048.1| - 0.49 9.4 3.6 0.78 8.8 3.6 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 bZIP_2 PF07716.15 gi|385803648|ref|YP_005840048.1| - 0.54 10.4 13.0 2 8.6 5.0 2.5 1 1 1 2 2 2 0 Basic region leucine zipper Occludin_ELL PF07303.13 gi|385803648|ref|YP_005840048.1| - 0.6 10.9 4.3 0.64 10.8 1.8 2.3 3 0 0 3 3 2 0 Occludin homology domain EzrA PF06160.12 gi|385803648|ref|YP_005840048.1| - 0.69 8.0 4.5 1 7.4 4.5 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA DUF4988 PF16378.5 gi|385803648|ref|YP_005840048.1| - 0.77 9.4 3.5 6.3 6.4 1.5 2.2 2 0 0 2 2 2 0 Domain of unknown function APG6_N PF17675.1 gi|385803648|ref|YP_005840048.1| - 1.3 9.5 10.0 0.13 12.8 4.9 1.8 2 0 0 2 2 1 0 Apg6 coiled-coil region EMP24_GP25L PF01105.24 gi|385803648|ref|YP_005840048.1| - 1.6 8.7 4.3 3 7.7 4.3 1.4 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD betaPIX_CC PF16523.5 gi|385803648|ref|YP_005840048.1| - 2 8.3 6.2 2.6 7.9 1.9 2.4 2 0 0 2 2 2 0 betaPIX coiled coil GIT_CC PF16559.5 gi|385803648|ref|YP_005840048.1| - 2.3 8.1 6.2 6.9 6.6 6.1 1.8 1 1 0 1 1 1 0 GIT coiled-coil Rho guanine nucleotide exchange factor Shugoshin_N PF07558.11 gi|385803648|ref|YP_005840048.1| - 2.6 8.0 9.3 1.1 9.2 3.4 2.3 1 1 1 2 2 2 0 Shugoshin N-terminal coiled-coil region Paralemmin PF03285.15 gi|385803648|ref|YP_005840048.1| - 5.1 6.6 8.0 2.8 7.4 6.0 1.5 1 1 0 1 1 1 0 Paralemmin DUF3450 PF11932.8 gi|385803648|ref|YP_005840048.1| - 5.4 6.2 7.4 3.4 6.9 4.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Zn-ribbon_8 PF09723.10 gi|385803648|ref|YP_005840048.1| - 5.7 7.1 8.0 17 5.6 1.0 2.7 2 0 0 2 2 2 0 Zinc ribbon domain HlyD_2 PF12700.7 gi|385803648|ref|YP_005840048.1| - 7.4 5.2 6.3 3 6.5 3.5 1.6 2 0 0 2 2 2 0 HlyD family secretion protein TauE PF01925.19 gi|385803649|ref|YP_005840049.1| - 1.3e-17 64.3 35.6 1.6e-17 64.0 35.6 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF2919 PF11143.8 gi|385803649|ref|YP_005840049.1| - 0.64 10.3 2.7 1.1 9.5 0.3 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF2919) MFS_1 PF07690.16 gi|385803651|ref|YP_005840051.1| - 6.4e-16 58.2 56.0 1.2e-10 40.9 28.9 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1424 PF07232.11 gi|385803651|ref|YP_005840051.1| - 0.11 11.5 0.0 0.17 10.9 0.0 1.1 1 0 0 1 1 1 0 Putative rep protein (DUF1424) MFS_1_like PF12832.7 gi|385803651|ref|YP_005840051.1| - 1.1 8.0 16.8 0.41 9.4 4.0 2.4 1 1 1 2 2 2 0 MFS_1 like family RHH_1 PF01402.21 gi|385803652|ref|YP_005840052.1| - 0.0097 15.8 0.1 0.018 15.0 0.1 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Rubrerythrin PF02915.17 gi|385803653|ref|YP_005840053.1| - 0.048 14.0 0.2 0.11 12.9 0.1 1.7 2 0 0 2 2 2 0 Rubrerythrin Lactamase_B PF00753.27 gi|385803654|ref|YP_005840054.1| - 4.4e-13 49.7 5.5 7.7e-12 45.6 5.5 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|385803654|ref|YP_005840054.1| - 8.7e-07 29.4 0.0 2e-06 28.3 0.0 1.6 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|385803654|ref|YP_005840054.1| - 0.0001 21.9 0.1 0.00023 20.7 0.1 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF1289 PF06945.13 gi|385803655|ref|YP_005840055.1| - 3.2e-17 62.1 1.5 4.3e-17 61.7 1.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1289) UBA PF00627.31 gi|385803655|ref|YP_005840055.1| - 0.021 14.7 0.0 0.037 13.9 0.0 1.4 1 0 0 1 1 1 0 UBA/TS-N domain DUF2848 PF11010.8 gi|385803655|ref|YP_005840055.1| - 0.052 13.1 0.0 0.16 11.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2848) Whib PF02467.16 gi|385803655|ref|YP_005840055.1| - 0.18 12.4 1.8 5.6 7.6 1.8 2.1 1 1 0 1 1 1 0 Transcription factor WhiB HTH_22 PF13309.6 gi|385803655|ref|YP_005840055.1| - 0.19 11.8 0.0 0.28 11.3 0.0 1.3 1 0 0 1 1 1 0 HTH domain MFS_1 PF07690.16 gi|385803656|ref|YP_005840056.1| - 3.1e-32 111.9 53.9 7.4e-18 64.6 26.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Cupin_2 PF07883.11 gi|385803658|ref|YP_005840058.1| - 2.5e-12 46.3 0.9 3e-12 46.1 0.9 1.1 1 0 0 1 1 1 1 Cupin domain DMSP_lyase PF16867.5 gi|385803658|ref|YP_005840058.1| - 6.1e-05 22.7 0.0 7.1e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase AraC_binding PF02311.19 gi|385803658|ref|YP_005840058.1| - 8.7e-05 22.4 0.1 0.00012 22.0 0.1 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|385803658|ref|YP_005840058.1| - 0.019 14.7 0.0 0.029 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Ectoine_synth PF06339.12 gi|385803658|ref|YP_005840058.1| - 0.028 14.6 0.0 0.03 14.5 0.0 1.1 1 0 0 1 1 1 0 Ectoine synthase Auxin_BP PF02041.16 gi|385803658|ref|YP_005840058.1| - 0.03 14.0 0.0 0.035 13.8 0.0 1.2 1 0 0 1 1 1 0 Auxin binding protein AAA_lid_2 PF17863.1 gi|385803659|ref|YP_005840059.1| - 1.1e-19 70.0 3.1 1.1e-19 70.0 3.1 3.6 3 0 0 3 3 3 1 AAA lid domain VWA_2 PF13519.6 gi|385803659|ref|YP_005840059.1| - 5.6e-14 52.7 0.0 2.2e-13 50.8 0.0 2.1 1 0 0 1 1 1 1 von Willebrand factor type A domain Mg_chelatase PF01078.21 gi|385803659|ref|YP_005840059.1| - 2.6e-12 46.6 0.0 5.1e-08 32.6 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|385803659|ref|YP_005840059.1| - 5.6e-09 36.1 0.0 0.00024 21.1 0.0 3.2 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|385803659|ref|YP_005840059.1| - 1.1e-05 24.7 0.1 0.00017 20.8 0.0 2.3 2 0 0 2 2 2 1 MCM P-loop domain AAA_16 PF13191.6 gi|385803659|ref|YP_005840059.1| - 0.00036 20.9 1.7 0.0076 16.6 0.1 3.2 2 1 1 3 3 3 1 AAA ATPase domain Sigma54_activat PF00158.26 gi|385803659|ref|YP_005840059.1| - 0.0022 17.7 0.0 0.19 11.4 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain VWA_3 PF13768.6 gi|385803659|ref|YP_005840059.1| - 0.025 14.5 0.2 0.057 13.3 0.2 1.6 1 0 0 1 1 1 0 von Willebrand factor type A domain AAA_29 PF13555.6 gi|385803659|ref|YP_005840059.1| - 0.12 12.2 0.0 0.36 10.6 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain CobN-Mg_chel PF02514.16 gi|385803660|ref|YP_005840060.1| - 0 1227.0 0.0 0 1226.8 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase CbiC PF02570.15 gi|385803661|ref|YP_005840061.1| - 1.3e-52 178.3 1.4 1.6e-52 178.0 1.4 1.1 1 0 0 1 1 1 1 Precorrin-8X methylmutase LKAAEAR PF15478.6 gi|385803661|ref|YP_005840061.1| - 0.039 14.2 0.0 0.079 13.2 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function with LKAAEAR motif TP_methylase PF00590.20 gi|385803662|ref|YP_005840062.1| - 6.5e-27 94.9 0.2 7.7e-27 94.6 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases NdhS PF11623.8 gi|385803662|ref|YP_005840062.1| - 0.022 14.4 0.1 0.044 13.4 0.1 1.5 1 0 0 1 1 1 0 NAD(P)H dehydrogenase subunit S Cob_adeno_trans PF01923.18 gi|385803663|ref|YP_005840063.1| - 4.9e-56 189.4 0.0 5.5e-56 189.2 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase Osmo_CC PF08946.10 gi|385803663|ref|YP_005840063.1| - 0.21 11.9 2.8 2 8.7 0.1 3.0 3 0 0 3 3 3 0 Osmosensory transporter coiled coil MeaB PF03308.16 gi|385803664|ref|YP_005840064.1| - 5.3e-84 281.3 11.2 2.8e-83 279.0 11.2 1.8 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|385803664|ref|YP_005840064.1| - 4.8e-07 29.5 1.3 4.9e-06 26.3 1.3 2.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|385803664|ref|YP_005840064.1| - 4.1e-05 23.3 0.6 0.00014 21.5 0.5 1.9 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.17 gi|385803664|ref|YP_005840064.1| - 0.00014 21.7 0.0 0.00085 19.2 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 gi|385803664|ref|YP_005840064.1| - 0.00015 21.5 0.1 0.00041 20.1 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.6 gi|385803664|ref|YP_005840064.1| - 0.00016 22.1 0.1 0.00095 19.6 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain NTPase_1 PF03266.15 gi|385803664|ref|YP_005840064.1| - 0.00041 20.3 0.1 0.0013 18.7 0.0 1.9 2 0 0 2 2 2 1 NTPase ABC_tran PF00005.27 gi|385803664|ref|YP_005840064.1| - 0.00045 20.7 0.5 0.0014 19.1 0.1 2.0 2 0 0 2 2 2 1 ABC transporter GTP_EFTU PF00009.27 gi|385803664|ref|YP_005840064.1| - 0.00063 19.3 0.0 0.93 9.0 0.0 2.4 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 gi|385803664|ref|YP_005840064.1| - 0.0013 18.7 0.2 0.033 14.3 0.1 2.6 1 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|385803664|ref|YP_005840064.1| - 0.0015 18.8 0.0 0.0061 16.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|385803664|ref|YP_005840064.1| - 0.0018 18.8 0.1 0.0099 16.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|385803664|ref|YP_005840064.1| - 0.0033 17.1 0.1 0.0085 15.8 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|385803664|ref|YP_005840064.1| - 0.0041 16.4 0.3 0.014 14.7 0.0 2.0 2 0 0 2 2 2 1 Zeta toxin AAA_28 PF13521.6 gi|385803664|ref|YP_005840064.1| - 0.0046 17.2 1.4 0.027 14.7 0.1 2.2 2 0 0 2 2 2 1 AAA domain KAP_NTPase PF07693.14 gi|385803664|ref|YP_005840064.1| - 0.005 16.1 0.0 0.0094 15.2 0.0 1.4 1 0 0 1 1 1 1 KAP family P-loop domain RsgA_GTPase PF03193.16 gi|385803664|ref|YP_005840064.1| - 0.011 15.7 1.3 0.087 12.7 0.0 2.7 3 0 0 3 3 3 0 RsgA GTPase PRK PF00485.18 gi|385803664|ref|YP_005840064.1| - 0.023 14.4 0.2 0.066 12.9 0.0 1.9 2 0 0 2 2 1 0 Phosphoribulokinase / Uridine kinase family KTI12 PF08433.10 gi|385803664|ref|YP_005840064.1| - 0.025 14.0 0.0 0.09 12.2 0.0 1.8 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Ploopntkinase3 PF18751.1 gi|385803664|ref|YP_005840064.1| - 0.026 14.4 0.0 0.068 13.1 0.0 1.7 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 AAA_17 PF13207.6 gi|385803664|ref|YP_005840064.1| - 0.027 14.9 0.1 0.12 12.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.9 gi|385803664|ref|YP_005840064.1| - 0.027 13.4 0.1 0.081 11.8 0.0 1.7 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain MobB PF03205.14 gi|385803664|ref|YP_005840064.1| - 0.027 14.3 0.0 0.14 12.1 0.0 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.12 gi|385803664|ref|YP_005840064.1| - 0.029 14.3 0.0 0.11 12.4 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.6 gi|385803664|ref|YP_005840064.1| - 0.051 13.7 0.2 0.15 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|385803664|ref|YP_005840064.1| - 0.068 12.4 0.0 0.13 11.4 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain DUF87 PF01935.17 gi|385803664|ref|YP_005840064.1| - 0.081 13.0 0.5 0.39 10.8 0.1 2.2 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_5 PF07728.14 gi|385803664|ref|YP_005840064.1| - 0.09 12.8 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ParA PF10609.9 gi|385803664|ref|YP_005840064.1| - 0.13 11.7 1.5 1 8.8 0.1 2.2 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase AAA_10 PF12846.7 gi|385803664|ref|YP_005840064.1| - 0.13 11.2 0.1 1.5 7.7 0.0 2.2 2 1 0 2 2 2 0 AAA-like domain B12-binding PF02310.19 gi|385803665|ref|YP_005840065.1| - 1.4e-21 76.7 0.7 1.7e-21 76.5 0.7 1.1 1 0 0 1 1 1 1 B12 binding domain Staph_haemo PF05480.11 gi|385803665|ref|YP_005840065.1| - 0.053 13.3 0.1 0.17 11.7 0.0 1.9 2 0 0 2 2 2 0 Staphylococcus haemolytic protein IMPDH PF00478.25 gi|385803665|ref|YP_005840065.1| - 0.079 11.9 0.1 0.082 11.9 0.1 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain 3HCDH_N PF02737.18 gi|385803666|ref|YP_005840066.1| - 4.7e-57 192.8 0.2 5.7e-57 192.5 0.2 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|385803666|ref|YP_005840066.1| - 2.6e-32 111.3 0.1 8.7e-32 109.6 0.0 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 gi|385803666|ref|YP_005840066.1| - 0.00066 19.9 1.9 0.0018 18.5 1.9 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|385803666|ref|YP_005840066.1| - 0.0056 17.2 0.7 0.014 15.9 0.7 1.8 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|385803666|ref|YP_005840066.1| - 0.024 14.0 0.1 0.046 13.1 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short_C2 PF13561.6 gi|385803666|ref|YP_005840066.1| - 0.084 12.4 0.3 0.12 11.9 0.3 1.4 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Pyr_redox_2 PF07992.14 gi|385803666|ref|YP_005840066.1| - 0.092 12.0 0.1 0.13 11.5 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|385803666|ref|YP_005840066.1| - 0.11 12.1 1.7 0.16 11.5 1.7 1.5 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|385803666|ref|YP_005840066.1| - 0.15 11.7 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ABC_tran PF00005.27 gi|385803667|ref|YP_005840067.1| - 7.5e-30 104.2 0.0 1.1e-29 103.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385803667|ref|YP_005840067.1| - 1.7e-14 54.4 2.3 3.1e-10 40.4 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385803667|ref|YP_005840067.1| - 4e-08 32.9 0.0 1.8e-07 30.8 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|385803667|ref|YP_005840067.1| - 2.1e-05 24.2 0.0 4e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|385803667|ref|YP_005840067.1| - 6.8e-05 23.5 0.0 8.8e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|385803667|ref|YP_005840067.1| - 0.00021 21.1 0.0 0.02 14.6 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain MukB PF04310.12 gi|385803667|ref|YP_005840067.1| - 0.00025 21.0 0.0 0.00037 20.4 0.0 1.2 1 0 0 1 1 1 1 MukB N-terminal RsgA_GTPase PF03193.16 gi|385803667|ref|YP_005840067.1| - 0.00073 19.5 0.0 0.0096 15.8 0.0 2.1 2 0 0 2 2 2 1 RsgA GTPase AAA_30 PF13604.6 gi|385803667|ref|YP_005840067.1| - 0.00079 19.2 0.0 0.0018 18.1 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|385803667|ref|YP_005840067.1| - 0.0026 18.0 0.1 0.0067 16.7 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|385803667|ref|YP_005840067.1| - 0.0067 16.8 0.2 0.017 15.5 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_13 PF13166.6 gi|385803667|ref|YP_005840067.1| - 0.0096 14.6 0.0 0.28 9.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|385803667|ref|YP_005840067.1| - 0.017 14.4 0.1 0.11 11.7 0.0 2.2 3 0 0 3 3 3 0 Zeta toxin AAA_19 PF13245.6 gi|385803667|ref|YP_005840067.1| - 0.019 15.3 0.1 0.028 14.8 0.1 1.4 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|385803667|ref|YP_005840067.1| - 0.044 12.6 0.1 0.41 9.4 0.0 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_33 PF13671.6 gi|385803667|ref|YP_005840067.1| - 0.054 13.7 0.2 0.095 12.9 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|385803667|ref|YP_005840067.1| - 0.054 13.1 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|385803667|ref|YP_005840067.1| - 0.066 13.1 0.0 0.16 11.9 0.0 1.6 2 0 0 2 2 2 0 NTPase MMR_HSR1 PF01926.23 gi|385803667|ref|YP_005840067.1| - 0.095 12.8 0.1 0.16 12.1 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.12 gi|385803667|ref|YP_005840067.1| - 0.099 12.6 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.14 gi|385803667|ref|YP_005840067.1| - 0.15 12.0 0.1 0.97 9.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) CbiQ PF02361.16 gi|385803668|ref|YP_005840068.1| - 2.1e-28 99.4 7.1 2.8e-28 99.0 7.1 1.1 1 0 0 1 1 1 1 Cobalt transport protein FixS PF03597.15 gi|385803669|ref|YP_005840069.1| - 0.86 9.4 0.1 0.86 9.4 0.1 2.6 2 1 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type CbiM PF01891.16 gi|385803670|ref|YP_005840070.1| - 5.6e-33 114.5 22.6 6.4e-33 114.3 22.6 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region ECF_trnsprt PF12822.7 gi|385803670|ref|YP_005840070.1| - 0.0016 18.6 20.6 0.0016 18.6 20.6 2.1 1 1 1 2 2 2 1 ECF transporter, substrate-specific component Thiolase_N PF00108.23 gi|385803671|ref|YP_005840071.1| - 3.4e-30 105.3 0.1 5.8e-30 104.5 0.1 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.26 gi|385803671|ref|YP_005840071.1| - 7e-13 48.7 6.9 2.9e-11 43.5 1.2 3.6 3 1 1 4 4 4 2 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.18 gi|385803671|ref|YP_005840071.1| - 8.3e-10 38.4 0.1 4.4e-09 36.0 0.1 2.2 2 0 0 2 2 2 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.22 gi|385803671|ref|YP_005840071.1| - 0.014 15.4 0.1 4.6 7.3 0.0 3.3 3 0 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.10 gi|385803671|ref|YP_005840071.1| - 0.017 15.0 1.2 1 9.2 0.2 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III OB_aCoA_assoc PF01796.17 gi|385803672|ref|YP_005840072.1| - 1.7e-08 34.3 0.7 2.6e-08 33.8 0.7 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|385803672|ref|YP_005840072.1| - 0.00015 21.5 1.8 0.00033 20.4 1.8 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.7 gi|385803672|ref|YP_005840072.1| - 0.023 14.6 0.1 0.039 13.9 0.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Ribosomal_L32p PF01783.23 gi|385803672|ref|YP_005840072.1| - 0.029 14.6 0.3 0.058 13.7 0.3 1.5 1 0 0 1 1 1 0 Ribosomal L32p protein family TF_Zn_Ribbon PF08271.12 gi|385803672|ref|YP_005840072.1| - 0.042 13.4 0.1 0.086 12.4 0.1 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding TackOD1 PF18551.1 gi|385803672|ref|YP_005840072.1| - 0.058 13.1 0.1 0.082 12.6 0.1 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Nudix_N_2 PF14803.6 gi|385803672|ref|YP_005840072.1| - 0.077 12.9 0.4 0.15 12.0 0.4 1.6 1 0 0 1 1 1 0 Nudix N-terminal adh_short_C2 PF13561.6 gi|385803673|ref|YP_005840073.1| - 5.5e-61 206.1 2.1 6.9e-61 205.8 2.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|385803673|ref|YP_005840073.1| - 6e-58 195.5 1.6 7.2e-58 195.3 1.6 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|385803673|ref|YP_005840073.1| - 1.3e-21 77.3 0.4 1.8e-21 76.8 0.4 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|385803673|ref|YP_005840073.1| - 3.3e-05 23.5 0.2 5.1e-05 22.9 0.2 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|385803673|ref|YP_005840073.1| - 0.0073 16.2 0.4 0.0098 15.8 0.4 1.2 1 0 0 1 1 1 1 NAD(P)H-binding THF_DHG_CYH_C PF02882.19 gi|385803673|ref|YP_005840073.1| - 0.0086 15.4 0.4 0.2 11.0 0.0 2.2 1 1 1 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NmrA PF05368.13 gi|385803673|ref|YP_005840073.1| - 0.066 12.8 0.8 0.16 11.5 0.2 1.9 2 0 0 2 2 2 0 NmrA-like family DUF3869 PF12985.7 gi|385803673|ref|YP_005840073.1| - 0.99 9.8 4.0 0.77 10.2 2.1 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF3869) Abhydrolase_1 PF00561.20 gi|385803674|ref|YP_005840074.1| - 1.6e-20 73.9 0.0 2.3e-20 73.3 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold PhaC_N PF07167.13 gi|385803674|ref|YP_005840074.1| - 3.9e-09 36.4 0.0 6.5e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus HHH_5 PF14520.6 gi|385803674|ref|YP_005840074.1| - 1.3e-07 32.1 0.0 4.1e-07 30.5 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix domain Hydrolase_4 PF12146.8 gi|385803674|ref|YP_005840074.1| - 3.1e-07 29.9 0.0 0.011 15.0 0.0 2.5 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DLH PF01738.18 gi|385803674|ref|YP_005840074.1| - 3e-05 23.7 0.0 0.001 18.6 0.0 2.4 2 0 0 2 2 2 1 Dienelactone hydrolase family DUF3141 PF11339.8 gi|385803674|ref|YP_005840074.1| - 7e-05 21.5 0.0 0.00026 19.6 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3141) DUF4332 PF14229.6 gi|385803674|ref|YP_005840074.1| - 0.00043 20.5 0.0 0.001 19.3 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) PHB_depo_C PF06850.11 gi|385803674|ref|YP_005840074.1| - 0.0016 17.9 0.0 0.0036 16.8 0.0 1.6 1 0 0 1 1 1 1 PHB de-polymerase C-terminus Cdd1 PF11731.8 gi|385803674|ref|YP_005840074.1| - 0.021 15.1 0.0 0.046 13.9 0.0 1.5 1 0 0 1 1 1 0 Pathogenicity locus FSH1 PF03959.13 gi|385803674|ref|YP_005840074.1| - 0.027 14.2 0.0 0.11 12.2 0.0 1.9 2 0 0 2 2 2 0 Serine hydrolase (FSH1) DNA_pol_lambd_f PF10391.9 gi|385803674|ref|YP_005840074.1| - 0.034 14.0 0.0 0.071 12.9 0.0 1.5 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda Abhydrolase_5 PF12695.7 gi|385803674|ref|YP_005840074.1| - 0.081 12.7 0.0 8.2 6.2 0.0 2.5 2 1 0 2 2 2 0 Alpha/beta hydrolase family PHA_synth_III_E PF09712.10 gi|385803675|ref|YP_005840075.1| - 2.3e-07 30.2 13.7 8e-07 28.5 0.1 2.7 1 1 0 2 2 2 1 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) IMD PF08397.11 gi|385803675|ref|YP_005840075.1| - 0.016 14.6 1.5 0.19 11.1 0.3 2.3 2 1 0 2 2 2 0 IRSp53/MIM homology domain FliD_C PF07195.12 gi|385803675|ref|YP_005840075.1| - 0.018 14.5 1.0 0.039 13.4 1.0 1.6 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus KCNQ_channel PF03520.14 gi|385803675|ref|YP_005840075.1| - 0.054 13.3 0.1 0.16 11.8 0.0 1.8 2 0 0 2 2 2 0 KCNQ voltage-gated potassium channel DUF4019 PF13211.6 gi|385803675|ref|YP_005840075.1| - 0.056 13.8 2.8 4.8 7.6 0.7 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF4019) Thy1 PF02511.15 gi|385803675|ref|YP_005840075.1| - 0.065 13.0 0.4 0.091 12.6 0.4 1.3 1 0 0 1 1 1 0 Thymidylate synthase complementing protein DUF4168 PF13767.6 gi|385803675|ref|YP_005840075.1| - 0.24 12.6 2.8 0.31 12.2 0.1 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4168) Sulfotransfer_4 PF17784.1 gi|385803675|ref|YP_005840075.1| - 0.26 11.1 2.0 0.88 9.4 0.5 2.0 1 1 0 2 2 2 0 Sulfotransferase domain NHS PF15273.6 gi|385803675|ref|YP_005840075.1| - 0.28 10.2 2.3 0.3 10.1 2.3 1.2 1 0 0 1 1 1 0 NHS-like Phasin_2 PF09361.10 gi|385803675|ref|YP_005840075.1| - 3.6 7.9 14.4 0.58 10.4 5.6 2.7 2 2 0 2 2 2 0 Phasin protein Nup88 PF10168.9 gi|385803676|ref|YP_005840076.1| - 0.02 12.7 0.1 0.031 12.1 0.1 1.2 1 0 0 1 1 1 0 Nuclear pore component Phasin_2 PF09361.10 gi|385803676|ref|YP_005840076.1| - 0.12 12.7 8.2 0.77 10.1 0.6 3.1 1 1 1 2 2 2 0 Phasin protein YtxH PF12732.7 gi|385803676|ref|YP_005840076.1| - 0.17 12.4 5.2 1.4 9.5 2.0 2.7 1 1 1 2 2 2 0 YtxH-like protein Tape_meas_lam_C PF09718.10 gi|385803676|ref|YP_005840076.1| - 0.37 10.9 3.4 15 5.8 0.1 2.8 2 1 0 2 2 2 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) WXG100 PF06013.12 gi|385803676|ref|YP_005840076.1| - 0.66 10.2 6.3 0.25 11.6 1.6 2.3 2 1 0 2 2 2 0 Proteins of 100 residues with WXG MazE_antitoxin PF04014.18 gi|385803677|ref|YP_005840077.1| - 0.094 12.7 0.3 0.22 11.5 0.3 1.7 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin AbrB-like PF14250.6 gi|385803677|ref|YP_005840077.1| - 0.11 12.6 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 AbrB-like transcriptional regulator MaoC_dehydratas PF01575.19 gi|385803678|ref|YP_005840078.1| - 1.4e-19 69.8 0.1 2.4e-19 69.1 0.1 1.3 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|385803678|ref|YP_005840078.1| - 1.1e-06 28.8 0.2 1.5e-05 25.2 0.0 2.2 1 1 1 2 2 2 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|385803678|ref|YP_005840078.1| - 0.1 13.0 0.0 0.21 11.9 0.0 1.5 1 0 0 1 1 1 0 Thioesterase superfamily AP_endonuc_2 PF01261.24 gi|385803679|ref|YP_005840079.1| - 7.2e-17 61.5 0.1 1e-16 61.0 0.1 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel YqjK PF13997.6 gi|385803679|ref|YP_005840079.1| - 0.09 13.0 0.1 0.21 11.9 0.1 1.6 1 0 0 1 1 1 0 YqjK-like protein tRNA-synt_1 PF00133.22 gi|385803680|ref|YP_005840080.1| - 7.5e-66 222.6 9.4 2.8e-25 88.7 0.0 4.9 1 1 3 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.6 gi|385803680|ref|YP_005840080.1| - 7.9e-55 185.3 0.0 1.4e-54 184.5 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.11 gi|385803680|ref|YP_005840080.1| - 9.2e-40 136.6 0.6 6.4e-25 87.7 0.1 4.3 3 1 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|385803680|ref|YP_005840080.1| - 1.7e-15 57.3 0.0 3.3e-15 56.3 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|385803680|ref|YP_005840080.1| - 2.6e-09 36.9 0.4 8.6e-06 25.3 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|385803680|ref|YP_005840080.1| - 2.1e-05 23.6 0.0 0.0077 15.2 0.0 2.8 2 0 0 2 2 2 2 tRNA synthetases class I (K) DZR PF12773.7 gi|385803680|ref|YP_005840080.1| - 7.8e-05 22.6 3.0 0.1 12.7 0.1 2.4 2 0 0 2 2 2 2 Double zinc ribbon DNA_ligase_ZBD PF03119.16 gi|385803680|ref|YP_005840080.1| - 0.015 15.4 6.3 0.26 11.4 0.0 3.4 3 1 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain tRNA-synt_1b PF00579.25 gi|385803680|ref|YP_005840080.1| - 0.053 12.8 0.2 0.18 11.1 0.0 1.8 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) zf-ribbon_3 PF13248.6 gi|385803680|ref|YP_005840080.1| - 0.21 11.1 6.9 2 7.9 0.1 3.5 4 0 0 4 4 4 0 zinc-ribbon domain HypA PF01155.19 gi|385803680|ref|YP_005840080.1| - 0.4 10.7 1.0 7 6.7 0.0 2.4 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|385803680|ref|YP_005840080.1| - 0.46 10.0 9.1 16 5.1 0.2 3.6 3 0 0 3 3 3 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|385803680|ref|YP_005840080.1| - 1.9 8.7 8.9 0.44 10.7 0.1 3.2 3 1 1 4 4 4 0 Zinc ribbon domain zf-ACC PF17848.1 gi|385803680|ref|YP_005840080.1| - 2.1 8.5 9.1 3.4 7.8 1.0 3.2 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain Auto_anti-p27 PF06677.12 gi|385803680|ref|YP_005840080.1| - 7.3 6.8 6.8 4.8 7.4 0.2 3.0 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DDE_Tnp_1 PF01609.21 gi|385803681|ref|YP_005840081.1| - 0.081 12.5 0.0 0.15 11.7 0.0 1.4 1 1 0 1 1 1 0 Transposase DDE domain DUF4840 PF16128.5 gi|385803682|ref|YP_005840082.1| - 0.02 15.0 0.1 0.027 14.5 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4840) PMSR PF01625.21 gi|385803683|ref|YP_005840083.1| - 2.4e-31 109.0 0.0 3.4e-31 108.5 0.0 1.2 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase FAD_binding_4 PF01565.23 gi|385803684|ref|YP_005840084.1| - 5e-31 107.3 2.8 9e-31 106.5 2.8 1.4 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.12 gi|385803684|ref|YP_005840084.1| - 1.8e-09 37.5 0.0 3.6e-09 36.6 0.0 1.5 1 0 0 1 1 1 1 Berberine and berberine like RMMBL PF07521.12 gi|385803685|ref|YP_005840085.1| - 0.0048 16.8 0.0 0.01 15.7 0.0 1.5 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain DNA_ligase_A_M PF01068.21 gi|385803686|ref|YP_005840086.1| - 7.9e-43 146.5 0.0 2.8e-42 144.7 0.0 1.8 1 1 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|385803686|ref|YP_005840086.1| - 1e-31 110.6 0.0 4.3e-31 108.6 0.0 2.0 2 0 0 2 2 2 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|385803686|ref|YP_005840086.1| - 5.9e-14 52.5 0.0 2.5e-13 50.4 0.0 2.1 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region SASRP1 PF15160.6 gi|385803686|ref|YP_005840086.1| - 0.14 11.8 0.9 0.24 11.1 0.9 1.2 1 0 0 1 1 1 0 Spermatogenesis-associated serine-rich protein 1 DUF1510 PF07423.11 gi|385803686|ref|YP_005840086.1| - 0.23 11.6 0.1 0.23 11.6 0.1 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF1510) DUF4864 PF16156.5 gi|385803687|ref|YP_005840087.1| - 1.5e-13 51.2 0.1 2.3e-13 50.7 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4864) Rhomboid PF01694.22 gi|385803688|ref|YP_005840088.1| - 1.7e-22 80.0 12.6 2.4e-22 79.6 12.6 1.2 1 0 0 1 1 1 1 Rhomboid family DUF1751 PF08551.10 gi|385803688|ref|YP_005840088.1| - 4.8e-05 23.9 0.4 4.8e-05 23.9 0.4 2.0 2 0 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) Methyltransf_25 PF13649.6 gi|385803691|ref|YP_005840091.1| - 8.4e-13 48.9 0.0 1.8e-12 47.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|385803691|ref|YP_005840091.1| - 1.5e-12 48.0 0.0 3e-12 47.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|385803691|ref|YP_005840091.1| - 4.6e-11 42.9 0.0 6.7e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|385803691|ref|YP_005840091.1| - 2e-09 37.4 0.0 2.3e-09 37.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|385803691|ref|YP_005840091.1| - 1e-08 35.8 0.0 2.3e-08 34.7 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|385803691|ref|YP_005840091.1| - 8.4e-06 25.7 0.0 1.4e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|385803691|ref|YP_005840091.1| - 7.7e-05 22.2 0.0 0.00012 21.6 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Ubie_methyltran PF01209.18 gi|385803691|ref|YP_005840091.1| - 0.00022 20.7 0.0 0.00033 20.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family FtsJ PF01728.19 gi|385803691|ref|YP_005840091.1| - 0.00022 21.4 0.0 0.00026 21.2 0.0 1.3 1 1 0 1 1 1 1 FtsJ-like methyltransferase CMAS PF02353.20 gi|385803691|ref|YP_005840091.1| - 0.00097 18.5 0.0 0.0013 18.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase GCD14 PF08704.10 gi|385803691|ref|YP_005840091.1| - 0.019 14.6 0.0 0.03 14.0 0.0 1.3 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Methyltr_RsmB-F PF01189.17 gi|385803691|ref|YP_005840091.1| - 0.049 13.3 0.0 0.073 12.7 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Fibrillarin PF01269.17 gi|385803691|ref|YP_005840091.1| - 0.086 11.9 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin Methyltransf_32 PF13679.6 gi|385803691|ref|YP_005840091.1| - 0.09 12.8 0.0 0.18 11.8 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain Na_Ca_ex PF01699.24 gi|385803693|ref|YP_005840093.1| - 6.4e-42 143.1 36.0 1.3e-21 77.1 13.7 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein NAD_binding_10 PF13460.6 gi|385803694|ref|YP_005840094.1| - 5.4e-15 55.8 0.0 7.4e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|385803694|ref|YP_005840094.1| - 2.2e-10 40.4 0.0 1e-09 38.2 0.0 2.1 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family NmrA PF05368.13 gi|385803694|ref|YP_005840094.1| - 4.5e-09 36.2 0.0 5.5e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family RmlD_sub_bind PF04321.17 gi|385803694|ref|YP_005840094.1| - 3.9e-06 26.2 0.0 5.5e-05 22.4 0.0 2.0 2 0 0 2 2 2 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|385803694|ref|YP_005840094.1| - 0.00011 21.4 0.0 0.00018 20.6 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Semialdhyde_dh PF01118.24 gi|385803694|ref|YP_005840094.1| - 0.0095 16.4 0.0 0.024 15.1 0.0 1.7 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|385803694|ref|YP_005840094.1| - 0.011 15.8 0.0 0.022 14.9 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus GDP_Man_Dehyd PF16363.5 gi|385803694|ref|YP_005840094.1| - 0.018 14.5 0.0 0.025 14.0 0.0 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|385803694|ref|YP_005840094.1| - 0.019 14.1 0.0 0.075 12.2 0.0 1.9 2 0 0 2 2 2 0 Male sterility protein PAC2 PF09754.9 gi|385803694|ref|YP_005840094.1| - 0.12 12.3 0.1 1.2 9.1 0.1 2.0 1 1 0 1 1 1 0 PAC2 family Fer2 PF00111.27 gi|385803695|ref|YP_005840095.1| - 1.3e-07 31.5 2.7 2e-06 27.6 2.7 2.4 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DUF2407 PF10302.9 gi|385803695|ref|YP_005840095.1| - 0.048 14.2 0.2 0.13 12.9 0.0 1.7 1 1 1 2 2 2 0 DUF2407 ubiquitin-like domain DUF2318 PF10080.9 gi|385803696|ref|YP_005840096.1| - 0.0051 16.9 0.3 0.0058 16.7 0.3 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2318) A2L_zn_ribbon PF08792.10 gi|385803696|ref|YP_005840096.1| - 0.022 14.4 0.8 0.038 13.7 0.8 1.4 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-C2H2_6 PF13912.6 gi|385803696|ref|YP_005840096.1| - 0.084 12.9 1.8 0.33 11.0 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger RNA_POL_M_15KD PF02150.16 gi|385803696|ref|YP_005840096.1| - 0.21 11.5 2.1 5.1 7.1 0.1 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Tnp_DNA_bind PF14706.6 gi|385803697|ref|YP_005840097.1| - 3.9e-25 87.5 0.0 6.9e-25 86.7 0.0 1.4 1 0 0 1 1 1 1 Transposase DNA-binding DDE_Tnp_1 PF01609.21 gi|385803697|ref|YP_005840097.1| - 2.6e-08 33.8 0.0 5.4e-08 32.7 0.0 1.6 1 1 0 1 1 1 1 Transposase DDE domain Dimer_Tnp_Tn5 PF02281.16 gi|385803697|ref|YP_005840097.1| - 6.6e-08 32.2 0.1 1.6e-07 31.0 0.1 1.8 1 1 0 1 1 1 1 Transposase Tn5 dimerisation domain FUN14 PF04930.15 gi|385803698|ref|YP_005840098.1| - 1.2e-20 73.7 3.4 1.5e-20 73.4 3.4 1.1 1 0 0 1 1 1 1 FUN14 family ATPase_gene1 PF09527.10 gi|385803698|ref|YP_005840098.1| - 2.6 8.3 9.3 1.3 9.2 3.3 2.5 2 1 0 2 2 2 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter GTP-bdg_N PF13167.6 gi|385803699|ref|YP_005840099.1| - 7.4e-21 74.6 0.0 1.7e-20 73.5 0.0 1.6 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|385803699|ref|YP_005840099.1| - 4e-18 65.5 0.0 1e-17 64.2 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|385803699|ref|YP_005840099.1| - 2.1e-16 60.3 6.4 6.9e-16 58.6 6.4 1.9 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region GTP_EFTU PF00009.27 gi|385803699|ref|YP_005840099.1| - 1.1e-09 38.1 0.1 4e-09 36.3 0.1 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|385803699|ref|YP_005840099.1| - 1e-08 35.3 0.1 0.00084 19.3 0.0 3.2 3 0 0 3 3 3 2 RsgA GTPase cobW PF02492.19 gi|385803699|ref|YP_005840099.1| - 1.8e-06 27.7 0.1 0.00036 20.2 0.0 2.6 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.18 gi|385803699|ref|YP_005840099.1| - 0.00026 20.5 0.0 0.38 10.3 0.0 2.9 3 0 0 3 3 3 2 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|385803699|ref|YP_005840099.1| - 0.00038 20.4 0.3 0.0043 17.0 0.0 2.3 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain AAA_18 PF13238.6 gi|385803699|ref|YP_005840099.1| - 0.016 15.8 0.0 0.065 13.8 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|385803699|ref|YP_005840099.1| - 0.021 14.9 0.0 0.052 13.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain PUMA PF15826.5 gi|385803699|ref|YP_005840099.1| - 0.029 14.6 3.9 0.098 12.8 2.0 2.3 2 0 0 2 2 2 0 Bcl-2-binding component 3, p53 upregulated modulator of apoptosis AAA_25 PF13481.6 gi|385803699|ref|YP_005840099.1| - 0.038 13.6 1.2 5.6 6.5 0.1 2.9 2 1 0 2 2 2 0 AAA domain Roc PF08477.13 gi|385803699|ref|YP_005840099.1| - 0.042 14.1 0.0 15 5.8 0.0 2.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Arf PF00025.21 gi|385803699|ref|YP_005840099.1| - 0.058 12.8 0.1 4.7 6.6 0.0 2.5 2 0 0 2 2 2 0 ADP-ribosylation factor family AAA_22 PF13401.6 gi|385803699|ref|YP_005840099.1| - 0.083 13.2 0.3 0.29 11.4 0.0 2.1 2 1 0 2 2 1 0 AAA domain AAA_16 PF13191.6 gi|385803699|ref|YP_005840099.1| - 0.13 12.6 1.5 0.33 11.3 0.8 2.1 1 1 0 1 1 1 0 AAA ATPase domain MoaC PF01967.21 gi|385803700|ref|YP_005840100.1| - 1.4e-47 161.2 3.0 1.7e-47 160.9 3.0 1.1 1 0 0 1 1 1 1 MoaC family Carb_kinase PF01256.17 gi|385803701|ref|YP_005840101.1| - 1.3e-48 165.6 1.9 2.4e-48 164.8 1.9 1.4 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|385803701|ref|YP_005840101.1| - 2.4e-42 144.7 0.2 5.1e-42 143.7 0.2 1.5 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.15 gi|385803701|ref|YP_005840101.1| - 0.0062 15.9 0.2 0.011 15.1 0.2 1.4 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family MFS_1 PF07690.16 gi|385803702|ref|YP_005840102.1| - 8.6e-31 107.1 48.9 8.6e-31 107.1 48.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|385803702|ref|YP_005840102.1| - 1e-08 34.5 16.9 1.5e-08 33.9 16.9 1.3 1 0 0 1 1 1 1 MFS_1 like family zf-FCS PF06467.14 gi|385803703|ref|YP_005840103.1| - 3.2e-05 23.8 1.4 5.5e-05 23.0 1.4 1.4 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF2116 PF09889.9 gi|385803703|ref|YP_005840103.1| - 0.0091 16.0 1.8 0.21 11.6 0.2 2.1 2 0 0 2 2 2 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) DZR PF12773.7 gi|385803703|ref|YP_005840103.1| - 0.01 15.8 0.5 0.014 15.4 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.6 gi|385803703|ref|YP_005840103.1| - 0.091 12.7 2.5 1.4 8.9 2.6 2.1 1 1 1 2 2 2 0 Nudix N-terminal YHS PF04945.13 gi|385803703|ref|YP_005840103.1| - 0.14 12.3 1.2 0.22 11.6 1.2 1.4 1 0 0 1 1 1 0 YHS domain NAD_binding_1 PF00175.21 gi|385803704|ref|YP_005840104.1| - 2.4e-15 57.1 0.0 3.5e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|385803704|ref|YP_005840104.1| - 0.0011 19.2 0.0 0.0017 18.7 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain HTH_20 PF12840.7 gi|385803705|ref|YP_005840105.1| - 3.7e-08 33.3 0.0 5.6e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|385803705|ref|YP_005840105.1| - 0.00012 21.5 0.0 0.00024 20.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|385803705|ref|YP_005840105.1| - 0.0049 16.8 0.0 0.0092 15.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|385803705|ref|YP_005840105.1| - 0.0069 16.2 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|385803705|ref|YP_005840105.1| - 0.01 15.6 0.0 0.02 14.7 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|385803705|ref|YP_005840105.1| - 0.02 14.8 0.0 0.036 14.0 0.0 1.5 1 1 0 1 1 1 0 MarR family Usp PF00582.26 gi|385803706|ref|YP_005840106.1| - 8.7e-39 133.3 2.2 9.7e-39 133.1 2.2 1.0 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.16 gi|385803706|ref|YP_005840106.1| - 0.0074 17.0 0.1 0.01 16.6 0.1 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase GARS_N PF02844.15 gi|385803706|ref|YP_005840106.1| - 0.045 14.5 0.1 0.08 13.7 0.1 1.7 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain Glu_synthase PF01645.17 gi|385803706|ref|YP_005840106.1| - 0.066 12.3 0.2 0.082 12.0 0.2 1.1 1 0 0 1 1 1 0 Conserved region in glutamate synthase ETF PF01012.21 gi|385803706|ref|YP_005840106.1| - 0.15 11.9 5.1 1 9.2 5.1 2.3 1 1 0 1 1 1 0 Electron transfer flavoprotein domain RIO1 PF01163.22 gi|385803707|ref|YP_005840107.1| - 1.2e-12 47.8 0.1 2e-12 47.1 0.1 1.2 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.14 gi|385803707|ref|YP_005840107.1| - 5.4e-09 35.7 0.0 8.5e-09 35.1 0.0 1.3 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|385803707|ref|YP_005840107.1| - 6.5e-05 23.0 0.6 0.00045 20.2 0.6 2.5 1 1 0 1 1 1 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|385803707|ref|YP_005840107.1| - 0.0017 17.8 0.0 0.0024 17.3 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain APH_6_hur PF04655.14 gi|385803707|ref|YP_005840107.1| - 0.02 14.3 0.0 0.028 13.8 0.0 1.3 1 0 0 1 1 1 0 Aminoglycoside/hydroxyurea antibiotic resistance kinase WaaY PF06176.11 gi|385803707|ref|YP_005840107.1| - 0.04 13.5 0.0 0.055 13.1 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Plasmod_Pvs28 PF06247.11 gi|385803708|ref|YP_005840108.1| - 0.12 12.7 0.1 0.16 12.3 0.1 1.2 1 0 0 1 1 1 0 Pvs28 EGF domain Polyketide_cyc2 PF10604.9 gi|385803709|ref|YP_005840109.1| - 9.4e-16 58.4 0.7 1.1e-15 58.2 0.7 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.13 gi|385803709|ref|YP_005840109.1| - 0.00025 20.8 0.0 0.0005 19.8 0.0 1.4 1 1 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc PF03364.20 gi|385803709|ref|YP_005840109.1| - 0.019 15.2 0.1 0.024 14.8 0.1 1.2 1 0 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport FaeA PF04703.12 gi|385803710|ref|YP_005840110.1| - 0.0013 19.1 0.1 0.0015 18.8 0.1 1.2 1 0 0 1 1 1 1 FaeA-like protein Put_DNA-bind_N PF06971.13 gi|385803710|ref|YP_005840110.1| - 0.063 13.3 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_AsnC-type PF13404.6 gi|385803710|ref|YP_005840110.1| - 0.073 12.9 0.1 0.17 11.8 0.0 1.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain TrkA_N PF02254.18 gi|385803711|ref|YP_005840111.1| - 4.9e-42 142.9 11.3 6.2e-22 78.0 2.4 2.8 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 gi|385803711|ref|YP_005840111.1| - 2.2e-27 94.7 1.5 1.5e-12 47.1 0.1 2.8 2 0 0 2 2 2 2 TrkA-C domain AdoHcyase_NAD PF00670.21 gi|385803711|ref|YP_005840111.1| - 0.0022 18.1 0.1 0.56 10.3 0.0 2.5 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Ion_trans_2 PF07885.16 gi|385803711|ref|YP_005840111.1| - 0.0024 17.8 5.3 0.0047 16.9 5.3 1.5 1 0 0 1 1 1 1 Ion channel NAD_binding_7 PF13241.6 gi|385803711|ref|YP_005840111.1| - 0.006 17.0 5.8 0.015 15.7 0.2 3.7 2 1 3 5 5 5 1 Putative NAD(P)-binding DUF3391 PF11871.8 gi|385803711|ref|YP_005840111.1| - 0.008 16.7 0.2 0.15 12.6 0.1 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF3391) 2-Hacid_dh_C PF02826.19 gi|385803711|ref|YP_005840111.1| - 0.04 13.3 0.0 0.073 12.4 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RP-C PF03428.13 gi|385803711|ref|YP_005840111.1| - 0.045 13.4 0.0 0.1 12.3 0.0 1.6 1 0 0 1 1 1 0 Replication protein C N-terminal domain Xan_ur_permease PF00860.20 gi|385803711|ref|YP_005840111.1| - 0.091 11.4 2.6 0.13 10.9 2.6 1.2 1 0 0 1 1 1 0 Permease family ThiF PF00899.21 gi|385803711|ref|YP_005840111.1| - 0.092 12.1 0.0 0.19 11.0 0.0 1.5 1 0 0 1 1 1 0 ThiF family COX3 PF00510.18 gi|385803712|ref|YP_005840112.1| - 1.4e-33 116.9 20.5 2.1e-33 116.3 20.5 1.2 1 0 0 1 1 1 1 Cytochrome c oxidase subunit III SQS_PSY PF00494.19 gi|385803713|ref|YP_005840113.1| - 4.9e-49 167.2 0.5 6e-49 166.9 0.5 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase DUF1414 PF07208.11 gi|385803713|ref|YP_005840113.1| - 0.027 14.5 0.0 0.078 13.0 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1414) Marek_A PF02124.15 gi|385803713|ref|YP_005840113.1| - 0.042 13.7 0.0 0.064 13.1 0.0 1.2 1 0 0 1 1 1 0 Marek's disease glycoprotein A Arg_decarbox_C PF17944.1 gi|385803713|ref|YP_005840113.1| - 0.048 14.2 0.0 1.4 9.5 0.0 2.7 2 0 0 2 2 2 0 Arginine decarboxylase C-terminal helical extension HEAT_UF PF18817.1 gi|385803713|ref|YP_005840113.1| - 0.14 12.4 0.0 0.48 10.7 0.0 1.8 1 0 0 1 1 1 0 Repeat of uncharacterized protein PH0542 CDP-OH_P_transf PF01066.21 gi|385803715|ref|YP_005840115.1| - 4e-11 43.5 4.7 4e-11 43.5 4.7 2.9 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Copper-bind PF00127.20 gi|385803716|ref|YP_005840116.1| - 4.2e-17 62.4 0.0 6.9e-17 61.7 0.0 1.3 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|385803716|ref|YP_005840116.1| - 0.00014 21.9 0.0 0.089 12.9 0.0 2.1 2 0 0 2 2 2 2 Cupredoxin-like domain SURNod19 PF07712.12 gi|385803716|ref|YP_005840116.1| - 0.009 14.8 0.3 0.012 14.4 0.3 1.1 1 0 0 1 1 1 1 Stress up-regulated Nod 19 Ribosomal_S3Ae PF01015.18 gi|385803717|ref|YP_005840117.1| - 8.1e-57 192.1 0.1 9.8e-57 191.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Ribosomal_S13_N PF08069.12 gi|385803720|ref|YP_005840120.1| - 1.2e-23 82.9 0.1 1.9e-23 82.3 0.1 1.3 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|385803720|ref|YP_005840120.1| - 1.1e-12 48.0 0.3 1.6e-12 47.4 0.3 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 DUF3675 PF12428.8 gi|385803721|ref|YP_005840121.1| - 0.056 14.0 0.0 0.12 12.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3675) Ac81 PF05820.11 gi|385803721|ref|YP_005840121.1| - 0.5 9.9 3.6 0.83 9.2 3.6 1.3 1 0 0 1 1 1 0 Baculoviridae AC81 SdpI PF13630.6 gi|385803721|ref|YP_005840121.1| - 1.9 8.7 5.4 4.8 7.4 1.6 2.4 2 0 0 2 2 2 0 SdpI/YhfL protein family DUF4065 PF13274.6 gi|385803722|ref|YP_005840122.1| - 4.1e-09 37.3 0.2 6.9e-09 36.6 0.2 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF4065) Adenine_glyco PF03352.13 gi|385803723|ref|YP_005840123.1| - 0.022 14.6 0.2 0.023 14.5 0.2 1.0 1 0 0 1 1 1 0 Methyladenine glycosylase HTH_12 PF08461.10 gi|385803725|ref|YP_005840125.1| - 0.0089 16.0 0.0 0.016 15.1 0.0 1.6 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_24 PF13412.6 gi|385803725|ref|YP_005840125.1| - 0.024 14.2 0.5 0.034 13.7 0.1 1.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|385803725|ref|YP_005840125.1| - 0.04 13.8 0.4 0.12 12.3 0.3 1.8 1 1 1 2 2 2 0 Bacterial regulatory protein, arsR family DUF262 PF03235.14 gi|385803726|ref|YP_005840126.1| - 6.4e-26 91.9 6.1 6.4e-26 91.9 6.1 2.9 3 0 0 3 3 3 1 Protein of unknown function DUF262 DUF1524 PF07510.11 gi|385803726|ref|YP_005840126.1| - 1.3e-17 64.0 2.4 1.9e-16 60.2 0.9 2.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1524) Med26 PF08711.11 gi|385803726|ref|YP_005840126.1| - 0.1 12.6 2.2 0.53 10.3 0.4 2.7 2 0 0 2 2 2 0 TFIIS helical bundle-like domain DUF45 PF01863.17 gi|385803727|ref|YP_005840127.1| - 6.5e-59 199.5 2.7 8.4e-59 199.1 2.5 1.2 1 1 0 1 1 1 1 Protein of unknown function DUF45 Peptidase_M64 PF09471.10 gi|385803727|ref|YP_005840127.1| - 0.006 16.1 0.1 0.008 15.7 0.1 1.2 1 0 0 1 1 1 1 IgA Peptidase M64 Codanin-1_C PF15296.6 gi|385803727|ref|YP_005840127.1| - 0.0088 16.1 0.6 0.015 15.4 0.6 1.4 1 0 0 1 1 1 1 Codanin-1 C-terminus WLM PF08325.10 gi|385803727|ref|YP_005840127.1| - 0.0098 16.0 1.3 0.013 15.6 0.3 1.7 2 0 0 2 2 2 1 WLM domain Peptidase_M57 PF12388.8 gi|385803727|ref|YP_005840127.1| - 0.017 14.8 0.0 0.025 14.2 0.0 1.2 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase GDH_N PF12466.8 gi|385803727|ref|YP_005840127.1| - 0.034 14.3 0.3 0.068 13.4 0.3 1.4 1 0 0 1 1 1 0 Glutamate dehydrogenase N terminal Peptidase_M99 PF17033.5 gi|385803727|ref|YP_005840127.1| - 0.047 13.1 0.2 0.17 11.3 0.1 1.8 1 1 1 2 2 2 0 Carboxypeptidase controlling helical cell shape catalytic SIMPL PF04402.14 gi|385803727|ref|YP_005840127.1| - 0.15 12.5 2.6 0.23 11.9 2.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF541) HPPK PF01288.20 gi|385803727|ref|YP_005840127.1| - 0.16 12.5 1.0 1.2 9.7 0.1 2.2 2 0 0 2 2 2 0 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SWI2_SNF2 PF18766.1 gi|385803728|ref|YP_005840128.1| - 1.6e-56 191.5 0.1 3.2e-56 190.5 0.1 1.5 1 0 0 1 1 1 1 SWI2/SNF2 ATPase HSDR_N PF04313.14 gi|385803728|ref|YP_005840128.1| - 9.7e-37 126.8 0.0 9.7e-37 126.8 0.0 3.1 4 0 0 4 4 4 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.15 gi|385803728|ref|YP_005840128.1| - 2.2e-20 73.3 0.0 5.9e-20 72.0 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF3387 PF11867.8 gi|385803728|ref|YP_005840128.1| - 1.2e-15 57.7 7.2 2.6e-15 56.6 7.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3387) DEAD PF00270.29 gi|385803728|ref|YP_005840128.1| - 0.00034 20.4 0.0 0.00078 19.3 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF2075 PF09848.9 gi|385803728|ref|YP_005840128.1| - 0.0018 17.6 0.0 0.0043 16.3 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) RYDR_ITPR PF01365.21 gi|385803728|ref|YP_005840128.1| - 0.019 14.4 0.1 0.18 11.2 0.1 2.6 2 1 1 3 3 3 0 RIH domain DUF5444 PF17519.2 gi|385803728|ref|YP_005840128.1| - 0.046 13.7 0.0 0.19 11.8 0.0 2.0 1 0 0 1 1 1 0 Family of unknown function (DUF5444) UvrD-helicase PF00580.21 gi|385803728|ref|YP_005840128.1| - 0.77 9.2 0.0 0.77 9.2 0.0 2.8 2 1 0 2 2 2 0 UvrD/REP helicase N-terminal domain Methylase_S PF01420.19 gi|385803729|ref|YP_005840129.1| - 4.1e-41 141.0 0.0 7e-23 81.7 0.0 2.2 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain DUF2443 PF10398.9 gi|385803729|ref|YP_005840129.1| - 1.5 8.9 3.8 19 5.4 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2443) Methylase_S PF01420.19 gi|385803730|ref|YP_005840130.1| - 2.5e-34 118.9 0.4 9.7e-22 78.0 0.0 2.2 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain N6_Mtase PF02384.16 gi|385803731|ref|YP_005840131.1| - 2.1e-78 263.8 0.0 2.6e-78 263.4 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|385803731|ref|YP_005840131.1| - 9e-22 78.2 0.4 4.1e-21 76.0 0.1 2.4 3 0 0 3 3 3 1 HsdM N-terminal domain UPF0020 PF01170.18 gi|385803731|ref|YP_005840131.1| - 4.3e-05 23.3 0.0 0.0001 22.1 0.0 1.6 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Ribosomal_S6e PF01092.19 gi|385803731|ref|YP_005840131.1| - 0.06 13.3 0.0 1.2 9.2 0.0 2.7 3 0 0 3 3 3 0 Ribosomal protein S6e Phage_integrase PF00589.22 gi|385803732|ref|YP_005840132.1| - 6.4e-10 39.1 0.0 1.2e-07 31.7 0.0 2.8 1 1 1 2 2 2 2 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|385803732|ref|YP_005840132.1| - 3.9e-05 23.9 0.1 0.00017 21.8 0.2 2.1 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|385803732|ref|YP_005840132.1| - 0.00012 22.4 0.0 0.00041 20.8 0.1 1.9 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|385803732|ref|YP_005840132.1| - 0.00013 22.2 0.0 0.00049 20.4 0.0 2.0 2 0 0 2 2 2 1 Phage integrase SAM-like domain Asp_decarbox PF02261.16 gi|385803733|ref|YP_005840133.1| - 1.4e-40 137.8 0.0 1.5e-40 137.7 0.0 1.0 1 0 0 1 1 1 1 Aspartate decarboxylase PNTB PF02233.16 gi|385803733|ref|YP_005840133.1| - 0.075 11.9 0.0 0.085 11.8 0.0 1.1 1 0 0 1 1 1 0 NAD(P) transhydrogenase beta subunit Peptidase_S8 PF00082.22 gi|385803733|ref|YP_005840133.1| - 0.11 11.7 0.0 0.12 11.6 0.0 1.1 1 0 0 1 1 1 0 Subtilase family SHOCT PF09851.9 gi|385803734|ref|YP_005840134.1| - 6e-09 35.4 0.4 6e-09 35.4 0.4 1.7 2 0 0 2 2 2 1 Short C-terminal domain DUF1707 PF08044.11 gi|385803734|ref|YP_005840134.1| - 0.0015 18.5 1.4 0.0029 17.6 1.1 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.12 gi|385803734|ref|YP_005840134.1| - 0.0019 18.2 2.1 0.0019 18.2 2.1 1.8 1 1 1 2 2 2 1 Gas vesicle protein G VbhA PF18495.1 gi|385803734|ref|YP_005840134.1| - 0.032 14.1 0.9 0.043 13.7 0.1 1.6 2 0 0 2 2 2 0 Antitoxin VbhA DUF816 PF05674.12 gi|385803734|ref|YP_005840134.1| - 0.13 12.2 0.0 0.17 11.8 0.0 1.1 1 0 0 1 1 1 0 Baculovirus protein of unknown function (DUF816) DHDPS PF00701.22 gi|385803735|ref|YP_005840135.1| - 1.6e-61 207.5 0.0 1.9e-61 207.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family AsnC_trans_reg PF01037.21 gi|385803735|ref|YP_005840135.1| - 0.12 12.4 0.0 0.27 11.2 0.0 1.6 1 0 0 1 1 1 0 Lrp/AsnC ligand binding domain ADH_N PF08240.12 gi|385803736|ref|YP_005840136.1| - 5.1e-29 100.3 2.9 9.1e-29 99.5 2.9 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|385803736|ref|YP_005840136.1| - 1.5e-19 70.3 0.1 2.5e-19 69.5 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|385803736|ref|YP_005840136.1| - 5.6e-05 24.2 0.1 0.00012 23.1 0.1 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glyoxalase PF00903.25 gi|385803737|ref|YP_005840137.1| - 7.3e-12 45.6 0.0 8.5e-12 45.4 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|385803737|ref|YP_005840137.1| - 8.4e-09 35.7 0.0 1e-08 35.4 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|385803737|ref|YP_005840137.1| - 0.0006 19.7 0.0 0.0042 17.0 0.0 1.9 1 1 0 1 1 1 1 Glyoxalase-like domain DUF3645 PF12359.8 gi|385803737|ref|YP_005840137.1| - 0.08 12.3 0.0 0.17 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3645) Glyoxalase_3 PF13468.6 gi|385803737|ref|YP_005840137.1| - 0.084 13.0 0.3 0.13 12.4 0.3 1.3 1 1 0 1 1 1 0 Glyoxalase-like domain TENA_THI-4 PF03070.16 gi|385803738|ref|YP_005840138.1| - 6.1e-48 163.4 0.1 6.9e-48 163.2 0.1 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family SSF PF00474.17 gi|385803739|ref|YP_005840139.1| - 2.9e-28 98.9 29.7 3.7e-28 98.5 29.7 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family PanZ PF12568.8 gi|385803739|ref|YP_005840139.1| - 0.16 11.7 0.0 0.3 10.8 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ DUF1684 PF07920.11 gi|385803740|ref|YP_005840140.1| - 2.5e-50 170.4 0.1 3e-50 170.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) Usp PF00582.26 gi|385803741|ref|YP_005840141.1| - 2.9e-27 95.9 0.1 1.4e-26 93.7 0.1 1.8 1 1 0 1 1 1 1 Universal stress protein family SCO1-SenC PF02630.14 gi|385803742|ref|YP_005840142.1| - 1.5e-20 73.5 0.4 2.1e-20 73.0 0.4 1.1 1 0 0 1 1 1 1 SCO1/SenC Redoxin PF08534.10 gi|385803743|ref|YP_005840143.1| - 8.7e-09 35.3 0.0 1.1e-08 35.0 0.0 1.2 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 gi|385803743|ref|YP_005840143.1| - 8.4e-08 32.2 0.0 1.1e-07 31.8 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.6 gi|385803743|ref|YP_005840143.1| - 5e-06 26.8 0.0 1.4e-05 25.3 0.0 1.7 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.20 gi|385803743|ref|YP_005840143.1| - 1.1e-05 25.4 0.0 2.8e-05 24.0 0.0 1.7 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|385803743|ref|YP_005840143.1| - 0.0077 16.7 0.0 0.013 16.0 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin-like domain Ant_C PF05586.11 gi|385803743|ref|YP_005840143.1| - 0.055 14.1 0.1 0.86 10.3 0.0 2.3 2 1 0 2 2 2 0 Anthrax receptor C-terminus region DsbD PF02683.15 gi|385803744|ref|YP_005840144.1| - 1.3e-11 44.8 14.5 3.4e-11 43.5 14.5 1.6 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Mersacidin PF16934.5 gi|385803744|ref|YP_005840144.1| - 0.4 10.5 2.9 0.45 10.3 0.3 2.3 2 0 0 2 2 2 0 Two-component Enterococcus faecalis cytolysin (EFC) NTP_transf_3 PF12804.7 gi|385803745|ref|YP_005840145.1| - 3.4e-35 121.8 0.0 4.2e-35 121.5 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|385803745|ref|YP_005840145.1| - 1.4e-05 25.1 0.0 3.7e-05 23.7 0.0 1.6 1 1 0 1 1 1 1 Cytidylyltransferase IspD PF01128.19 gi|385803745|ref|YP_005840145.1| - 0.0033 17.2 0.1 0.0059 16.4 0.1 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.23 gi|385803745|ref|YP_005840145.1| - 0.0042 16.7 0.0 0.0062 16.1 0.0 1.4 1 1 0 1 1 1 1 Nucleotidyl transferase GDPD PF03009.17 gi|385803748|ref|YP_005840148.1| - 7.9e-27 94.6 0.5 4.1e-25 89.0 0.5 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family adh_short PF00106.25 gi|385803749|ref|YP_005840149.1| - 3e-41 141.0 0.0 3.8e-41 140.7 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|385803749|ref|YP_005840149.1| - 1.7e-34 119.4 0.0 2e-34 119.2 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|385803749|ref|YP_005840149.1| - 5.8e-09 36.1 0.1 2.6e-08 34.0 0.1 1.8 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|385803749|ref|YP_005840149.1| - 8.9e-08 31.9 0.0 1.1e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|385803749|ref|YP_005840149.1| - 5.2e-06 26.5 0.6 5.7e-06 26.3 0.6 1.3 1 1 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|385803749|ref|YP_005840149.1| - 0.00035 19.8 0.2 0.00045 19.4 0.2 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain THF_DHG_CYH_C PF02882.19 gi|385803749|ref|YP_005840149.1| - 0.087 12.1 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RPE65 PF03055.15 gi|385803750|ref|YP_005840150.1| - 2.8e-109 366.4 0.1 3.2e-109 366.2 0.1 1.0 1 0 0 1 1 1 1 Retinal pigment epithelial membrane protein IMPDH PF00478.25 gi|385803751|ref|YP_005840151.1| - 4.9e-137 456.6 7.9 5.6e-137 456.4 7.9 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|385803751|ref|YP_005840151.1| - 2.6e-21 75.8 3.7 7.9e-10 39.0 0.2 2.7 2 0 0 2 2 2 2 CBS domain NMO PF03060.15 gi|385803751|ref|YP_005840151.1| - 4.2e-10 39.5 5.9 6.1e-06 25.9 2.7 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|385803751|ref|YP_005840151.1| - 5.8e-09 35.4 3.7 8.7e-09 34.9 3.7 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|385803751|ref|YP_005840151.1| - 0.00021 20.5 5.8 0.0004 19.6 5.8 1.4 1 0 0 1 1 1 1 Conserved region in glutamate synthase DHO_dh PF01180.21 gi|385803751|ref|YP_005840151.1| - 0.00034 19.9 2.6 0.0005 19.4 1.7 1.6 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase ThiG PF05690.14 gi|385803751|ref|YP_005840151.1| - 0.0013 18.1 2.2 0.0013 18.1 2.2 2.4 3 0 0 3 3 3 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|385803751|ref|YP_005840151.1| - 0.002 17.7 1.7 0.0037 16.7 1.0 1.7 2 1 0 2 2 2 1 Histidine biosynthesis protein Dus PF01207.17 gi|385803751|ref|YP_005840151.1| - 0.0028 16.8 0.1 0.006 15.7 0.1 1.5 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) DZR PF12773.7 gi|385803754|ref|YP_005840154.1| - 0.018 15.1 0.4 0.027 14.5 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon DiS_P_DiS PF06750.13 gi|385803754|ref|YP_005840154.1| - 0.11 12.7 0.0 0.11 12.6 0.0 1.1 1 0 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain Zn-ribbon_8 PF09723.10 gi|385803754|ref|YP_005840154.1| - 0.27 11.4 3.5 3.2 8.0 0.2 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|385803755|ref|YP_005840155.1| - 0.16 12.1 1.8 0.64 10.2 1.9 1.8 1 1 0 1 1 1 0 Zinc ribbon domain YhfH PF14149.6 gi|385803755|ref|YP_005840155.1| - 0.51 10.3 4.9 4.8 7.2 0.3 2.1 2 0 0 2 2 2 0 YhfH-like protein Lectin_C_term PF18022.1 gi|385803756|ref|YP_005840156.1| - 2e-34 118.1 0.3 3.3e-34 117.4 0.3 1.3 1 0 0 1 1 1 1 Ricin-type beta-trefoil lectin C-terminal domain Agglutinin_C PF18021.1 gi|385803756|ref|YP_005840156.1| - 0.0079 16.7 0.4 0.029 14.9 0.4 1.9 1 1 0 1 1 1 1 Agglutinin C-terminal 2_5_RNA_ligase2 PF13563.6 gi|385803757|ref|YP_005840157.1| - 2e-24 86.2 0.0 2.6e-24 85.8 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.16 gi|385803757|ref|YP_005840157.1| - 0.00017 21.7 0.0 0.23 11.7 0.0 2.4 2 1 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.9 gi|385803757|ref|YP_005840157.1| - 0.16 11.9 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 AKAP7 2'5' RNA ligase-like domain Acyl-CoA_dh_1 PF00441.24 gi|385803758|ref|YP_005840158.1| - 3.5e-43 147.4 1.4 3.5e-43 147.4 1.4 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|385803758|ref|YP_005840158.1| - 3.7e-25 88.0 0.0 8.4e-25 86.8 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|385803758|ref|YP_005840158.1| - 1.3e-21 77.3 0.5 3.1e-21 76.1 0.5 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|385803758|ref|YP_005840158.1| - 5.9e-19 68.7 3.1 1.2e-18 67.6 3.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB PF03241.13 gi|385803758|ref|YP_005840158.1| - 0.043 12.9 0.1 0.086 11.9 0.1 1.4 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase C terminal Mor PF08765.11 gi|385803758|ref|YP_005840158.1| - 0.083 12.9 0.3 6.7 6.8 0.0 2.7 2 1 0 2 2 2 0 Mor transcription activator family Polysacc_synt_C PF14667.6 gi|385803759|ref|YP_005840159.1| - 0.00014 21.9 16.5 0.00014 21.9 16.5 3.8 2 2 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain PIRT PF15099.6 gi|385803759|ref|YP_005840159.1| - 0.4 10.3 1.9 3.1 7.4 0.1 3.0 2 0 0 2 2 2 0 Phosphoinositide-interacting protein family NUDIX PF00293.28 gi|385803760|ref|YP_005840160.1| - 6e-18 65.2 1.0 7.8e-18 64.8 1.0 1.1 1 0 0 1 1 1 1 NUDIX domain AAA_17 PF13207.6 gi|385803760|ref|YP_005840160.1| - 0.015 15.7 0.0 0.021 15.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain PaaX PF07848.12 gi|385803761|ref|YP_005840161.1| - 0.043 14.0 0.2 0.1 12.8 0.0 1.6 2 0 0 2 2 2 0 PaaX-like protein PqqD PF05402.12 gi|385803762|ref|YP_005840162.1| - 0.033 14.5 0.0 0.12 12.7 0.0 1.9 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) ECH_1 PF00378.20 gi|385803763|ref|YP_005840163.1| - 6.1e-68 228.8 0.0 6.8e-68 228.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|385803763|ref|YP_005840163.1| - 1.8e-37 129.6 0.3 4e-37 128.5 0.3 1.5 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase SDH_sah PF01972.16 gi|385803763|ref|YP_005840163.1| - 0.0022 17.1 0.0 0.0039 16.2 0.0 1.3 1 0 0 1 1 1 1 Serine dehydrogenase proteinase TFIIS_C PF01096.18 gi|385803764|ref|YP_005840164.1| - 3.5e-17 62.0 4.0 3.5e-17 62.0 4.0 3.2 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|385803764|ref|YP_005840164.1| - 3.9e-07 29.8 12.9 7.2e-07 29.0 1.3 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Prok-RING_1 PF14446.6 gi|385803764|ref|YP_005840164.1| - 9.8e-06 25.4 11.0 0.00016 21.5 2.1 3.1 3 0 0 3 3 3 2 Prokaryotic RING finger family 1 OrfB_Zn_ribbon PF07282.11 gi|385803764|ref|YP_005840164.1| - 6.2e-05 22.8 11.6 0.011 15.7 0.9 2.4 1 1 0 2 2 2 2 Putative transposase DNA-binding domain zf_UBZ PF18439.1 gi|385803764|ref|YP_005840164.1| - 9.2e-05 21.9 10.5 1.9 8.1 0.2 4.2 4 0 0 4 4 4 1 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1595 PF12760.7 gi|385803764|ref|YP_005840164.1| - 9.4e-05 22.3 6.0 0.00023 21.1 0.7 2.5 2 1 0 2 2 2 1 Transposase zinc-ribbon domain zf-RING_7 PF02591.15 gi|385803764|ref|YP_005840164.1| - 0.00017 21.7 7.8 2.6 8.3 0.1 4.2 3 1 1 4 4 4 1 C4-type zinc ribbon domain DZR PF12773.7 gi|385803764|ref|YP_005840164.1| - 0.00019 21.4 10.0 0.005 16.8 0.8 2.7 1 1 2 3 3 3 3 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|385803764|ref|YP_005840164.1| - 0.00033 20.7 7.5 0.32 11.2 0.0 3.8 3 1 0 3 3 3 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|385803764|ref|YP_005840164.1| - 0.00078 18.8 10.2 0.54 9.7 3.1 3.8 3 1 1 4 4 4 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|385803764|ref|YP_005840164.1| - 0.00096 18.8 9.0 3.2 7.6 0.2 4.2 4 0 0 4 4 4 1 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|385803764|ref|YP_005840164.1| - 0.001 19.0 12.3 0.33 10.9 0.2 4.1 4 0 0 4 4 4 1 PhnA Zinc-Ribbon zf-RRN7 PF11781.8 gi|385803764|ref|YP_005840164.1| - 0.0012 18.5 7.4 9.1 6.1 0.1 4.2 4 0 0 4 4 4 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Nudix_N_2 PF14803.6 gi|385803764|ref|YP_005840164.1| - 0.0017 18.2 9.2 0.74 9.8 1.4 3.5 3 1 0 3 3 3 2 Nudix N-terminal TF_Zn_Ribbon PF08271.12 gi|385803764|ref|YP_005840164.1| - 0.0018 17.7 13.6 0.02 14.4 2.2 3.7 2 2 1 3 3 3 1 TFIIB zinc-binding Rubredoxin_2 PF18073.1 gi|385803764|ref|YP_005840164.1| - 0.0034 17.1 8.1 3.2 7.6 0.0 4.0 4 0 0 4 4 4 1 Rubredoxin metal binding domain PHF5 PF03660.14 gi|385803764|ref|YP_005840164.1| - 0.0075 16.5 5.7 0.65 10.2 0.5 2.1 1 1 1 2 2 2 2 PHF5-like protein FYVE_2 PF02318.16 gi|385803764|ref|YP_005840164.1| - 0.0097 16.1 3.2 0.099 12.9 0.4 2.2 2 0 0 2 2 2 1 FYVE-type zinc finger zf-IS66 PF13005.7 gi|385803764|ref|YP_005840164.1| - 0.011 16.1 7.4 9 6.8 0.1 4.0 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 DUF3268 PF11672.8 gi|385803764|ref|YP_005840164.1| - 0.012 15.9 5.2 0.032 14.6 0.5 2.4 2 1 0 2 2 2 0 zinc-finger-containing domain YhfH PF14149.6 gi|385803764|ref|YP_005840164.1| - 0.02 14.8 12.6 0.13 12.3 0.5 4.1 4 0 0 4 4 4 0 YhfH-like protein FdhE PF04216.12 gi|385803764|ref|YP_005840164.1| - 0.023 14.6 0.1 0.023 14.6 0.1 1.8 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation DUF4428 PF14471.6 gi|385803764|ref|YP_005840164.1| - 0.023 14.6 0.5 0.023 14.6 0.5 2.7 3 0 0 3 3 2 0 Domain of unknown function (DUF4428) zf-CHY PF05495.12 gi|385803764|ref|YP_005840164.1| - 0.086 13.3 7.3 3.7 8.1 6.8 2.9 1 1 0 1 1 1 0 CHY zinc finger zinc-ribbons_6 PF07191.12 gi|385803764|ref|YP_005840164.1| - 0.1 12.6 10.7 0.47 10.5 0.9 2.6 2 1 0 2 2 2 0 zinc-ribbons zf-UBP PF02148.19 gi|385803764|ref|YP_005840164.1| - 0.12 12.7 5.3 0.19 12.1 1.0 2.3 1 1 1 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein HypA PF01155.19 gi|385803764|ref|YP_005840164.1| - 0.13 12.3 9.7 0.86 9.7 1.2 2.8 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DNA_RNApol_7kD PF03604.13 gi|385803764|ref|YP_005840164.1| - 0.14 11.8 10.7 4.9 6.9 0.1 3.9 3 1 0 4 4 4 0 DNA directed RNA polymerase, 7 kDa subunit GFA PF04828.14 gi|385803764|ref|YP_005840164.1| - 0.15 12.5 8.7 0.3 11.5 0.1 3.1 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_4 PF13717.6 gi|385803764|ref|YP_005840164.1| - 0.15 12.0 8.3 1.7 8.6 0.4 3.6 4 0 0 4 4 4 0 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|385803764|ref|YP_005840164.1| - 0.16 12.2 9.4 2 8.7 1.0 3.0 2 2 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like A2L_zn_ribbon PF08792.10 gi|385803764|ref|YP_005840164.1| - 0.16 11.7 13.7 16 5.4 4.5 4.1 3 1 0 3 3 3 0 A2L zinc ribbon domain UPF0547 PF10571.9 gi|385803764|ref|YP_005840164.1| - 0.17 12.0 11.6 2.4 8.3 0.1 4.0 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zinc_ribbon_10 PF10058.9 gi|385803764|ref|YP_005840164.1| - 0.2 11.4 8.5 0.47 10.2 1.5 3.0 2 2 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Lar_restr_allev PF14354.6 gi|385803764|ref|YP_005840164.1| - 0.23 11.8 12.6 1.7 9.1 1.7 2.8 1 1 2 3 3 3 0 Restriction alleviation protein Lar zf-ISL3 PF14690.6 gi|385803764|ref|YP_005840164.1| - 0.52 11.0 7.9 2.2 9.0 0.0 3.7 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_L37ae PF01780.19 gi|385803764|ref|YP_005840164.1| - 0.61 10.2 7.4 1.2 9.3 0.6 2.8 1 1 0 2 2 2 0 Ribosomal L37ae protein family DnaJ_CXXCXGXG PF00684.19 gi|385803764|ref|YP_005840164.1| - 0.62 10.5 7.2 5.5 7.4 0.5 2.3 1 1 0 2 2 2 0 DnaJ central domain IBR PF01485.21 gi|385803764|ref|YP_005840164.1| - 0.63 10.3 12.5 7.6e+02 0.4 12.5 2.9 1 1 0 1 1 1 0 IBR domain, a half RING-finger domain TackOD1 PF18551.1 gi|385803764|ref|YP_005840164.1| - 0.78 9.4 9.6 0.45 10.1 1.1 2.5 2 1 0 2 2 2 0 Thaumarchaeal output domain 1 zf-ACC PF17848.1 gi|385803764|ref|YP_005840164.1| - 0.83 9.8 14.1 1.2 9.2 0.5 3.9 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain zf-C4_Topoisom PF01396.19 gi|385803764|ref|YP_005840164.1| - 1 9.2 8.8 4.1 7.3 0.1 3.5 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_15 PF17032.5 gi|385803764|ref|YP_005840164.1| - 1 10.1 11.7 0.43 11.4 0.8 2.7 1 1 2 3 3 3 0 zinc-ribbon family ADK_lid PF05191.14 gi|385803764|ref|YP_005840164.1| - 1.5 8.9 12.1 5.5 7.1 0.3 4.0 4 0 0 4 4 4 0 Adenylate kinase, active site lid DUF2387 PF09526.10 gi|385803764|ref|YP_005840164.1| - 1.6 9.0 8.4 0.23 11.6 1.9 2.2 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) Ima1_N PF09779.9 gi|385803764|ref|YP_005840164.1| - 2 9.3 8.3 26 5.7 8.3 2.2 1 1 0 1 1 1 0 Ima1 N-terminal domain DUF3797 PF12677.7 gi|385803764|ref|YP_005840164.1| - 2.6 8.0 7.2 0.22 11.5 0.9 2.4 2 2 1 3 3 2 0 Domain of unknown function (DUF3797) Cytochrom_CIII PF02085.16 gi|385803764|ref|YP_005840164.1| - 2.6 8.4 8.9 46 4.4 6.3 2.3 1 1 1 2 2 2 0 Class III cytochrome C family eIF-5_eIF-2B PF01873.17 gi|385803764|ref|YP_005840164.1| - 4 7.3 10.2 1 9.3 1.7 2.2 2 0 0 2 2 2 0 Domain found in IF2B/IF5 DUF4379 PF14311.6 gi|385803764|ref|YP_005840164.1| - 4.8 7.6 12.7 1.2 9.6 0.6 3.2 2 2 2 4 4 4 0 Probable Zinc-ribbon domain HalOD2 PF18547.1 gi|385803764|ref|YP_005840164.1| - 7.4 6.6 12.2 3.9 7.4 0.1 3.7 3 1 1 4 4 4 0 Halobacterial output domain 2 zf-NADH-PPase PF09297.11 gi|385803764|ref|YP_005840164.1| - 8.3 6.2 11.6 3.1 7.5 0.9 3.6 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Opy2 PF09463.10 gi|385803764|ref|YP_005840164.1| - 9.5 6.6 10.6 5 7.5 0.2 3.6 4 0 0 4 4 4 0 Opy2 protein GCD14 PF08704.10 gi|385803766|ref|YP_005840166.1| - 2e-11 44.0 0.0 9.5e-10 38.6 0.0 2.0 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|385803766|ref|YP_005840166.1| - 1.8e-08 34.3 0.0 2.4e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|385803766|ref|YP_005840166.1| - 4.5e-08 33.7 0.1 7.7e-08 32.9 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|385803766|ref|YP_005840166.1| - 5.6e-08 32.5 0.1 7.6e-08 32.1 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|385803766|ref|YP_005840166.1| - 2.8e-07 30.5 0.1 3.8e-07 30.1 0.1 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.6 gi|385803766|ref|YP_005840166.1| - 4.9e-07 29.7 0.0 1.6e-06 28.0 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|385803766|ref|YP_005840166.1| - 1.3e-06 28.1 0.0 1.8e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|385803766|ref|YP_005840166.1| - 1.5e-06 28.7 0.1 3.1e-06 27.8 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|385803766|ref|YP_005840166.1| - 1.3e-05 26.1 0.1 2.5e-05 25.3 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|385803766|ref|YP_005840166.1| - 1.6e-05 25.6 0.0 2.5e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|385803766|ref|YP_005840166.1| - 8.8e-05 21.7 0.0 0.00017 20.7 0.0 1.4 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase CMAS PF02353.20 gi|385803766|ref|YP_005840166.1| - 0.00072 18.9 0.0 0.00089 18.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_3 PF01596.17 gi|385803766|ref|YP_005840166.1| - 0.002 17.4 0.0 0.0025 17.0 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_18 PF12847.7 gi|385803766|ref|YP_005840166.1| - 0.0089 16.0 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|385803766|ref|YP_005840166.1| - 0.019 14.6 0.0 0.026 14.2 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Met_10 PF02475.16 gi|385803766|ref|YP_005840166.1| - 0.02 14.7 0.0 0.025 14.3 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein DUF726 PF05277.12 gi|385803766|ref|YP_005840166.1| - 0.06 12.3 0.0 0.084 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF726) TehB PF03848.14 gi|385803766|ref|YP_005840166.1| - 0.1 12.0 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB NAC PF01849.18 gi|385803767|ref|YP_005840167.1| - 8.6e-17 60.9 0.7 1.3e-16 60.3 0.7 1.3 1 0 0 1 1 1 1 NAC domain UBA_4 PF14555.6 gi|385803767|ref|YP_005840167.1| - 0.0091 15.8 0.5 0.021 14.6 0.5 1.6 1 0 0 1 1 1 1 UBA-like domain Imm50 PF15594.6 gi|385803767|ref|YP_005840167.1| - 0.018 15.3 0.0 0.025 14.8 0.0 1.2 1 0 0 1 1 1 0 Immunity protein 50 LptC PF06835.13 gi|385803767|ref|YP_005840167.1| - 0.036 13.6 0.3 0.059 13.0 0.3 1.5 1 1 0 1 1 1 0 Lipopolysaccharide-assembly, LptC-related MM_CoA_mutase PF01642.22 gi|385803768|ref|YP_005840168.1| - 3.3e-220 732.0 3.2 3.9e-220 731.8 3.2 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Glyoxalase_4 PF13669.6 gi|385803769|ref|YP_005840169.1| - 2.1e-15 56.9 0.2 2.5e-15 56.7 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|385803769|ref|YP_005840169.1| - 4.5e-08 33.4 0.2 4.9e-08 33.3 0.2 1.0 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|385803769|ref|YP_005840169.1| - 0.00033 20.8 0.1 0.00065 19.9 0.1 1.6 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMP-binding PF00501.28 gi|385803770|ref|YP_005840170.1| - 3.4e-81 273.0 0.3 4e-81 272.8 0.3 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|385803770|ref|YP_005840170.1| - 1.5e-18 67.5 0.4 5.4e-18 65.7 0.3 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Metallophos_2 PF12850.7 gi|385803771|ref|YP_005840171.1| - 8e-11 42.4 1.4 1.2e-10 41.9 1.4 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|385803771|ref|YP_005840171.1| - 1.7e-06 28.7 1.5 5.6e-06 27.0 1.5 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase YyzF PF14116.6 gi|385803772|ref|YP_005840172.1| - 0.12 12.4 0.8 7.3 6.7 0.1 2.7 2 0 0 2 2 2 0 YyzF-like protein tRNA_anti-codon PF01336.25 gi|385803773|ref|YP_005840173.1| - 0.0091 16.0 5.9 0.53 10.3 0.3 3.7 3 1 0 3 3 3 2 OB-fold nucleic acid binding domain zf-RING_7 PF02591.15 gi|385803773|ref|YP_005840173.1| - 0.062 13.5 0.2 0.14 12.3 0.2 1.7 1 0 0 1 1 1 0 C4-type zinc ribbon domain AI-2E_transport PF01594.16 gi|385803774|ref|YP_005840174.1| - 2.9e-34 118.7 32.1 4.1e-34 118.2 32.1 1.1 1 0 0 1 1 1 1 AI-2E family transporter UCR_UQCRX_QCR9 PF05365.12 gi|385803774|ref|YP_005840174.1| - 0.098 12.6 0.1 0.31 11.0 0.1 1.9 1 0 0 1 1 1 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like PadR PF03551.14 gi|385803775|ref|YP_005840175.1| - 3e-16 59.1 1.3 3.7e-16 58.9 1.3 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|385803775|ref|YP_005840175.1| - 0.013 15.4 0.0 0.019 15.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DUF1495 PF07381.11 gi|385803775|ref|YP_005840175.1| - 0.015 15.1 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_27 PF13463.6 gi|385803775|ref|YP_005840175.1| - 0.11 13.0 0.3 0.18 12.3 0.3 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain HypA PF01155.19 gi|385803776|ref|YP_005840176.1| - 0.0037 17.3 0.9 0.0091 16.0 0.9 1.7 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|385803776|ref|YP_005840176.1| - 0.0057 16.8 1.1 0.013 15.6 1.1 1.6 1 0 0 1 1 1 1 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|385803776|ref|YP_005840176.1| - 0.011 15.7 2.0 3.6 7.6 0.1 2.5 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|385803776|ref|YP_005840176.1| - 0.035 13.5 4.2 0.11 11.9 4.2 1.9 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|385803776|ref|YP_005840176.1| - 0.035 13.6 0.4 0.077 12.5 0.4 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding DZR PF12773.7 gi|385803776|ref|YP_005840176.1| - 0.046 13.7 0.7 0.099 12.7 0.7 1.5 1 0 0 1 1 1 0 Double zinc ribbon KRE1 PF17056.5 gi|385803776|ref|YP_005840176.1| - 0.072 12.8 0.2 0.14 11.9 0.2 1.5 1 0 0 1 1 1 0 Killer toxin-resistance protein 1 Zn_Tnp_IS91 PF14319.6 gi|385803776|ref|YP_005840176.1| - 0.079 13.0 1.5 0.17 11.9 1.5 1.5 1 0 0 1 1 1 0 Transposase zinc-binding domain zinc_ribbon_2 PF13240.6 gi|385803776|ref|YP_005840176.1| - 0.11 12.3 2.4 6.5 6.6 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|385803776|ref|YP_005840176.1| - 0.17 11.8 1.9 0.34 10.9 1.9 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-IS66 PF13005.7 gi|385803776|ref|YP_005840176.1| - 0.17 12.3 3.3 12 6.4 0.1 3.3 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 DUF1451 PF07295.11 gi|385803776|ref|YP_005840176.1| - 0.18 11.9 0.8 0.52 10.3 0.8 1.8 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf-RRN7 PF11781.8 gi|385803776|ref|YP_005840176.1| - 0.46 10.2 3.2 12 5.7 0.1 2.5 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zinc_ribbon_4 PF13717.6 gi|385803776|ref|YP_005840176.1| - 0.72 9.8 2.4 15 5.6 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|385803776|ref|YP_005840176.1| - 0.76 9.9 6.9 0.21 11.7 1.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.12 gi|385803776|ref|YP_005840176.1| - 1 9.4 7.0 2.8 7.9 3.8 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-tcix PF14952.6 gi|385803776|ref|YP_005840176.1| - 1.1 9.0 3.5 2.9 7.6 0.2 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DoxX PF07681.12 gi|385803777|ref|YP_005840177.1| - 1.4e-07 31.9 19.8 6.4e-07 29.9 5.8 3.3 2 1 0 2 2 2 2 DoxX DoxD PF04173.13 gi|385803777|ref|YP_005840177.1| - 0.69 9.8 12.1 14 5.5 1.1 3.7 2 1 1 3 3 3 0 TQO small subunit DoxD DDE_5 PF13546.6 gi|385803778|ref|YP_005840178.1| - 3.2e-26 92.3 0.0 4.7e-26 91.7 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|385803778|ref|YP_005840178.1| - 8.1e-16 58.3 0.1 2.1e-15 56.9 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|385803778|ref|YP_005840178.1| - 0.00013 21.3 0.5 0.00055 19.3 0.5 1.8 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|385803778|ref|YP_005840178.1| - 0.016 13.5 0.0 0.022 13.0 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 DDE_Tnp_1_6 PF13751.6 gi|385803778|ref|YP_005840178.1| - 0.14 12.4 0.0 0.31 11.3 0.0 1.6 1 0 0 1 1 1 0 Transposase DDE domain DASH_Dad4 PF08650.10 gi|385803779|ref|YP_005840179.1| - 0.14 12.1 0.1 7.4 6.6 0.0 2.2 2 0 0 2 2 2 0 DASH complex subunit Dad4 Hydrolase_3 PF08282.12 gi|385803780|ref|YP_005840180.1| - 5.7e-11 42.6 0.2 0.00013 21.8 0.0 2.5 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|385803780|ref|YP_005840180.1| - 0.012 15.9 0.1 0.11 12.8 0.1 2.6 1 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase CutC PF03932.14 gi|385803780|ref|YP_005840180.1| - 0.027 13.9 0.1 0.049 13.1 0.1 1.4 1 0 0 1 1 1 0 CutC family MR_MLE_C PF13378.6 gi|385803781|ref|YP_005840181.1| - 9.5e-56 188.8 1.2 1.4e-55 188.2 1.2 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|385803781|ref|YP_005840181.1| - 2.8e-15 56.6 0.1 5.9e-15 55.5 0.1 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SBP_bac_11 PF13531.6 gi|385803781|ref|YP_005840181.1| - 0.018 14.8 0.2 0.031 14.0 0.2 1.5 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein Enolase_N PF03952.16 gi|385803781|ref|YP_005840181.1| - 0.057 13.6 0.0 0.12 12.6 0.0 1.5 1 0 0 1 1 1 0 Enolase, N-terminal domain Rubrerythrin PF02915.17 gi|385803782|ref|YP_005840182.1| - 0.019 15.4 0.8 0.041 14.3 0.8 1.6 1 0 0 1 1 1 0 Rubrerythrin Fer2 PF00111.27 gi|385803783|ref|YP_005840183.1| - 2.2e-12 46.7 2.0 2.8e-12 46.4 2.0 1.1 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|385803783|ref|YP_005840183.1| - 0.048 13.7 0.6 0.32 11.1 0.6 2.3 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|385803783|ref|YP_005840183.1| - 0.051 13.6 0.1 0.051 13.6 0.1 1.2 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain DHODB_Fe-S_bind PF10418.9 gi|385803783|ref|YP_005840183.1| - 0.1 12.4 1.4 0.23 11.3 0.3 2.0 3 0 0 3 3 3 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B DUF3054 PF11255.8 gi|385803784|ref|YP_005840184.1| - 7.9e-18 65.0 9.1 9.4e-18 64.7 9.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) HGWP PF03578.15 gi|385803784|ref|YP_005840184.1| - 0.0078 15.7 0.2 0.017 14.6 0.2 1.6 1 0 0 1 1 1 1 HGWP repeat Methyltransf_11 PF08241.12 gi|385803785|ref|YP_005840185.1| - 5.9e-18 65.3 0.0 9.4e-18 64.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|385803785|ref|YP_005840185.1| - 1.6e-13 51.1 0.1 2.5e-13 50.6 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|385803785|ref|YP_005840185.1| - 1.5e-12 47.6 0.0 1.9e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|385803785|ref|YP_005840185.1| - 5.7e-10 39.8 0.0 9.7e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|385803785|ref|YP_005840185.1| - 1.1e-08 35.0 0.0 1.6e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|385803785|ref|YP_005840185.1| - 3.3e-07 29.9 0.0 5.9e-07 29.0 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.15 gi|385803785|ref|YP_005840185.1| - 0.00043 20.2 0.0 0.00054 19.9 0.0 1.1 1 0 0 1 1 1 1 Hypothetical methyltransferase MetW PF07021.12 gi|385803785|ref|YP_005840185.1| - 0.0028 17.3 0.0 0.0043 16.7 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Acetyltransf_1 PF00583.25 gi|385803786|ref|YP_005840186.1| - 0.00035 20.8 0.0 0.00056 20.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|385803786|ref|YP_005840186.1| - 0.0067 16.4 0.0 0.013 15.4 0.0 1.5 1 1 0 1 1 1 1 FR47-like protein YpzI PF14140.6 gi|385803786|ref|YP_005840186.1| - 0.065 13.0 0.1 0.15 11.9 0.1 1.6 1 0 0 1 1 1 0 YpzI-like protein XPG_I PF00867.18 gi|385803787|ref|YP_005840187.1| - 8.3e-24 83.8 0.0 1.5e-23 83.0 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|385803787|ref|YP_005840187.1| - 5.4e-12 46.1 0.0 9.9e-12 45.2 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|385803787|ref|YP_005840187.1| - 0.0014 19.2 0.0 0.0029 18.2 0.0 1.6 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold DNA_pol_lambd_f PF10391.9 gi|385803787|ref|YP_005840187.1| - 0.17 11.8 0.0 12 5.8 0.0 2.5 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda DUF3179 PF11376.8 gi|385803789|ref|YP_005840189.1| - 3e-98 328.7 0.1 3.6e-98 328.5 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3179) TAT_signal PF10518.9 gi|385803789|ref|YP_005840189.1| - 0.035 14.0 2.2 0.071 13.0 2.2 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence NnrU PF07298.11 gi|385803790|ref|YP_005840190.1| - 0.27 10.7 6.5 0.36 10.3 0.2 2.9 1 1 1 3 3 3 0 NnrU protein MerT PF02411.15 gi|385803790|ref|YP_005840190.1| - 0.75 9.8 10.6 0.12 12.4 6.1 2.0 2 1 0 2 2 2 0 MerT mercuric transport protein zinc_ribbon_4 PF13717.6 gi|385803791|ref|YP_005840191.1| - 0.00066 19.6 0.6 0.082 12.9 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|385803791|ref|YP_005840191.1| - 0.0011 18.7 0.4 1 9.2 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|385803791|ref|YP_005840191.1| - 0.0022 18.1 4.9 0.16 12.1 4.9 2.1 1 1 0 1 1 1 1 Zinc ribbon domain CpXC PF14353.6 gi|385803791|ref|YP_005840191.1| - 0.0035 17.4 1.2 0.0065 16.5 1.2 1.4 1 1 0 1 1 1 1 CpXC protein HypA PF01155.19 gi|385803791|ref|YP_005840191.1| - 0.0049 16.9 0.3 0.0058 16.6 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-Sec23_Sec24 PF04810.15 gi|385803791|ref|YP_005840191.1| - 0.0051 16.8 0.7 2.9 8.0 0.1 2.1 2 0 0 2 2 2 2 Sec23/Sec24 zinc finger DUF4379 PF14311.6 gi|385803791|ref|YP_005840191.1| - 0.0094 16.3 4.3 0.015 15.6 0.2 2.1 1 1 1 2 2 2 1 Probable Zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|385803791|ref|YP_005840191.1| - 0.01 15.3 3.4 0.2 11.2 0.0 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding HalOD2 PF18547.1 gi|385803791|ref|YP_005840191.1| - 0.012 15.5 1.1 0.11 12.4 0.2 2.1 2 0 0 2 2 2 0 Halobacterial output domain 2 A2L_zn_ribbon PF08792.10 gi|385803791|ref|YP_005840191.1| - 0.019 14.7 0.5 4.6 7.1 0.2 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain Rubredoxin_2 PF18073.1 gi|385803791|ref|YP_005840191.1| - 0.021 14.5 4.5 0.089 12.5 0.4 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain zinc_ribbon_15 PF17032.5 gi|385803791|ref|YP_005840191.1| - 0.021 15.5 0.3 0.03 15.1 0.3 1.2 1 0 0 1 1 1 0 zinc-ribbon family zinc_ribbon_10 PF10058.9 gi|385803791|ref|YP_005840191.1| - 0.024 14.4 0.3 0.99 9.2 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Terminase_GpA PF05876.12 gi|385803791|ref|YP_005840191.1| - 0.028 13.0 0.3 0.029 12.9 0.3 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) OrfB_Zn_ribbon PF07282.11 gi|385803791|ref|YP_005840191.1| - 0.032 14.2 0.4 2.5 8.1 0.0 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DUF35_N PF12172.8 gi|385803791|ref|YP_005840191.1| - 0.035 14.0 1.8 1.3 9.0 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_ribbon_SprT PF17283.2 gi|385803791|ref|YP_005840191.1| - 0.036 14.0 0.9 0.34 10.8 0.1 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|385803791|ref|YP_005840191.1| - 0.036 13.7 3.1 3.5 7.4 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit PhnA_Zn_Ribbon PF08274.12 gi|385803791|ref|YP_005840191.1| - 0.039 13.9 0.0 0.1 12.6 0.0 1.7 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.6 gi|385803791|ref|YP_005840191.1| - 0.041 13.3 1.8 0.74 9.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.26 gi|385803791|ref|YP_005840191.1| - 0.044 14.3 1.6 3.3 8.3 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Mut7-C PF01927.16 gi|385803791|ref|YP_005840191.1| - 0.055 13.6 0.7 0.079 13.1 0.7 1.3 1 0 0 1 1 1 0 Mut7-C RNAse domain zf-C2H2_3 PF13878.6 gi|385803791|ref|YP_005840191.1| - 0.056 13.3 0.4 5.2 7.0 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-LITAF-like PF10601.9 gi|385803791|ref|YP_005840191.1| - 0.074 13.3 0.5 0.89 9.9 0.0 2.0 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain CxC5 PF18718.1 gi|385803791|ref|YP_005840191.1| - 0.12 12.4 0.5 0.46 10.6 0.0 1.8 1 1 1 2 2 2 0 CxC5 like cysteine cluster associated with KDZ transposases Rubredoxin PF00301.20 gi|385803791|ref|YP_005840191.1| - 0.31 11.1 4.8 6.3 6.9 4.8 2.2 1 1 0 1 1 1 0 Rubredoxin SBP_bac_8 PF13416.6 gi|385803792|ref|YP_005840192.1| - 8.9e-24 84.8 5.8 1.3e-23 84.2 5.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|385803793|ref|YP_005840193.1| - 2e-17 63.6 17.0 2e-17 63.6 17.0 2.4 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|385803794|ref|YP_005840194.1| - 4.2e-13 49.4 20.5 4.2e-13 49.4 20.5 2.0 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|385803795|ref|YP_005840195.1| - 1.6e-32 112.8 0.0 3.7e-32 111.7 0.0 1.6 2 0 0 2 2 2 1 ABC transporter OB_MalK PF17912.1 gi|385803795|ref|YP_005840195.1| - 1.5e-11 45.0 0.0 8.1e-11 42.6 0.0 2.3 2 0 0 2 2 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|385803795|ref|YP_005840195.1| - 9.8e-08 32.1 0.0 0.0075 16.1 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|385803795|ref|YP_005840195.1| - 6.6e-06 26.2 0.1 2.5e-05 24.3 0.0 2.1 2 0 0 2 2 2 1 TOBE domain CysA_C_terminal PF17850.1 gi|385803795|ref|YP_005840195.1| - 0.0001 22.8 0.0 0.00033 21.1 0.0 1.9 1 0 0 1 1 1 1 CysA C-terminal regulatory domain RsgA_GTPase PF03193.16 gi|385803795|ref|YP_005840195.1| - 0.00074 19.5 0.0 0.0015 18.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase SMC_N PF02463.19 gi|385803795|ref|YP_005840195.1| - 0.00083 18.9 0.2 0.0064 15.9 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|385803795|ref|YP_005840195.1| - 0.0013 19.1 0.0 0.0041 17.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|385803795|ref|YP_005840195.1| - 0.0015 18.5 0.0 0.0025 17.8 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|385803795|ref|YP_005840195.1| - 0.0044 17.4 0.0 0.011 16.1 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|385803795|ref|YP_005840195.1| - 0.015 15.1 0.0 0.031 14.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|385803795|ref|YP_005840195.1| - 0.025 15.0 0.2 0.12 12.8 0.0 2.2 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|385803795|ref|YP_005840195.1| - 0.029 14.0 0.2 0.42 10.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|385803795|ref|YP_005840195.1| - 0.033 14.4 1.0 0.074 13.2 1.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|385803795|ref|YP_005840195.1| - 0.041 13.6 0.7 0.15 11.7 0.1 2.1 1 1 1 2 2 2 0 AAA domain MIT_C PF16565.5 gi|385803795|ref|YP_005840195.1| - 0.06 13.3 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Phospholipase D-like domain at C-terminus of MIT AAA_15 PF13175.6 gi|385803795|ref|YP_005840195.1| - 0.068 12.9 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|385803795|ref|YP_005840195.1| - 0.092 12.1 0.0 0.21 11.0 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TOBE PF03459.17 gi|385803795|ref|YP_005840195.1| - 0.12 12.7 0.0 0.29 11.4 0.0 1.6 1 0 0 1 1 1 0 TOBE domain AAA_23 PF13476.6 gi|385803795|ref|YP_005840195.1| - 0.2 12.2 0.0 0.36 11.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|385803795|ref|YP_005840195.1| - 0.22 11.5 2.0 0.46 10.5 0.1 2.5 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) PAS_4 PF08448.10 gi|385803796|ref|YP_005840196.1| - 1.5e-61 205.5 8.0 2.6e-10 40.5 0.1 7.6 8 0 0 8 8 7 6 PAS fold PAS_9 PF13426.7 gi|385803796|ref|YP_005840196.1| - 1.4e-56 189.1 8.7 4.5e-11 42.9 0.0 7.7 8 0 0 8 8 7 7 PAS domain PAS PF00989.25 gi|385803796|ref|YP_005840196.1| - 5.5e-44 148.8 14.8 5.9e-11 42.4 0.4 8.8 8 1 2 10 10 10 5 PAS fold PAS_3 PF08447.12 gi|385803796|ref|YP_005840196.1| - 5.8e-33 113.0 1.5 1.3e-10 41.4 0.0 7.5 7 0 0 7 7 7 4 PAS fold PAS_8 PF13188.7 gi|385803796|ref|YP_005840196.1| - 1.1e-29 101.9 4.0 4.2e-07 29.9 0.0 7.1 6 0 0 6 6 6 5 PAS domain PAS_11 PF14598.6 gi|385803796|ref|YP_005840196.1| - 3.6e-10 40.0 0.9 8.9e-06 25.8 0.0 4.1 4 0 0 4 4 4 2 PAS domain GAF_2 PF13185.6 gi|385803796|ref|YP_005840196.1| - 1.9e-06 28.2 0.0 7.3e-06 26.3 0.0 2.1 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.7 gi|385803796|ref|YP_005840196.1| - 0.0021 18.2 10.8 0.7 10.1 0.0 6.9 6 3 2 8 8 8 1 PAS fold IQCJ-SCHIP1 PF15157.6 gi|385803796|ref|YP_005840196.1| - 0.016 15.0 0.0 5.2 6.9 0.0 2.7 2 0 0 2 2 2 0 Fusion protein IQCJ-SCHIP1 with IQ-like motif MLTR_LBD PF17765.1 gi|385803796|ref|YP_005840196.1| - 0.063 13.4 0.0 0.58 10.3 0.0 2.7 2 0 0 2 2 2 0 MmyB-like transcription regulator ligand binding domain HATPase_c PF02518.26 gi|385803796|ref|YP_005840196.1| - 0.071 13.6 0.7 0.3 11.6 0.1 2.4 1 1 1 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Plk4_PB1 PF18190.1 gi|385803796|ref|YP_005840196.1| - 0.077 13.2 0.4 0.5 10.6 0.1 2.5 1 1 1 2 2 2 0 Polo-like Kinase 4 Polo Box 1 RSS_P20 PF11757.8 gi|385803796|ref|YP_005840196.1| - 0.2 12.1 1.4 1.7 9.1 0.1 2.9 2 0 0 2 2 2 0 Suppressor of RNA silencing P21-like N-terminal domain Phycobilisome PF00502.19 gi|385803796|ref|YP_005840196.1| - 0.25 11.3 1.9 53 3.7 0.0 3.6 3 0 0 3 3 3 0 Phycobilisome protein HisKA PF00512.25 gi|385803796|ref|YP_005840196.1| - 0.63 10.1 8.4 0.12 12.4 0.3 3.8 4 0 0 4 4 4 0 His Kinase A (phospho-acceptor) domain Response_reg PF00072.24 gi|385803797|ref|YP_005840197.1| - 8.7e-16 58.1 0.3 1.5e-15 57.3 0.3 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.10 gi|385803797|ref|YP_005840197.1| - 5.7e-13 49.0 5.6 1.1e-12 48.1 5.6 1.5 1 0 0 1 1 1 1 HalX domain DUF349 PF03993.12 gi|385803797|ref|YP_005840197.1| - 0.067 13.5 3.8 0.13 12.6 3.8 1.6 1 0 0 1 1 1 0 Domain of Unknown Function (DUF349) COX16 PF14138.6 gi|385803797|ref|YP_005840197.1| - 0.12 12.9 3.1 0.24 11.9 1.0 2.2 2 1 0 2 2 2 0 Cytochrome c oxidase assembly protein COX16 DUF5305 PF17231.2 gi|385803798|ref|YP_005840198.1| - 1.3e-36 126.0 2.9 2.2e-36 125.3 1.6 1.8 2 0 0 2 2 2 1 Family of unknown function (DUF5305) DUF1616 PF07760.11 gi|385803798|ref|YP_005840198.1| - 0.43 9.9 3.0 1.2 8.5 3.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1616) Peptidase_S24 PF00717.23 gi|385803799|ref|YP_005840199.1| - 2.6e-05 24.1 0.1 6.9e-05 22.7 0.0 1.7 2 0 0 2 2 2 1 Peptidase S24-like T2SSF PF00482.23 gi|385803799|ref|YP_005840199.1| - 0.05 13.6 0.1 0.12 12.4 0.1 1.6 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein F PKD PF00801.20 gi|385803801|ref|YP_005840201.1| - 1.7e-13 50.2 5.6 2.3e-06 27.4 0.1 3.1 3 0 0 3 3 3 2 PKD domain Y_Y_Y PF07495.13 gi|385803801|ref|YP_005840201.1| - 0.43 10.6 2.7 28 4.8 0.2 3.0 3 0 0 3 3 3 0 Y_Y_Y domain fn3_5 PF06280.12 gi|385803802|ref|YP_005840202.1| - 0.019 15.6 2.9 0.032 14.9 2.3 1.7 1 1 0 1 1 1 0 Fn3-like domain ABC2_membrane_3 PF12698.7 gi|385803803|ref|YP_005840203.1| - 0.061 12.4 5.8 0.078 12.1 5.8 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein CDC45 PF02724.14 gi|385803804|ref|YP_005840204.1| - 0.11 10.8 5.7 0.14 10.4 5.7 1.1 1 0 0 1 1 1 0 CDC45-like protein SDA1 PF05285.12 gi|385803804|ref|YP_005840204.1| - 2.4 7.5 12.2 4.6 6.6 12.2 1.4 1 0 0 1 1 1 0 SDA1 NPR3 PF03666.13 gi|385803804|ref|YP_005840204.1| - 4.5 6.0 8.0 7.8 5.2 8.0 1.3 1 0 0 1 1 1 0 Nitrogen Permease regulator of amino acid transport activity 3 DUF2457 PF10446.9 gi|385803804|ref|YP_005840204.1| - 8.2 5.5 23.7 14 4.7 23.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) FAM176 PF14851.6 gi|385803804|ref|YP_005840204.1| - 9.3 5.9 7.8 21 4.8 7.8 1.6 1 0 0 1 1 1 0 FAM176 family Cu_bind_CorA PF18252.1 gi|385803805|ref|YP_005840205.1| - 0.0092 15.6 1.4 3 7.4 0.0 2.7 1 1 1 2 2 2 2 Copper(I)-binding protein CorA FixG_C PF11614.8 gi|385803805|ref|YP_005840205.1| - 0.042 14.1 0.4 0.27 11.5 0.2 2.1 2 0 0 2 2 2 0 IG-like fold at C-terminal of FixG, putative oxidoreductase TFIIE_beta PF02186.15 gi|385803806|ref|YP_005840206.1| - 0.039 14.3 0.1 0.14 12.5 0.1 1.9 2 0 0 2 2 2 0 TFIIE beta subunit core domain Bacillus_HBL PF05791.11 gi|385803808|ref|YP_005840208.1| - 0.0044 16.9 13.3 0.035 13.9 2.9 2.4 1 1 1 2 2 2 2 Bacillus haemolytic enterotoxin (HBL) Prok-RING_4 PF14447.6 gi|385803808|ref|YP_005840208.1| - 0.098 12.5 0.6 0.18 11.7 0.6 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 zinc-ribbons_6 PF07191.12 gi|385803808|ref|YP_005840208.1| - 0.11 12.6 0.2 0.2 11.6 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbons DASH_Dad1 PF08649.10 gi|385803808|ref|YP_005840208.1| - 0.24 11.6 12.7 0.49 10.6 2.8 4.0 4 1 1 5 5 5 0 DASH complex subunit Dad1 DUF3450 PF11932.8 gi|385803808|ref|YP_005840208.1| - 0.36 10.1 28.8 0.33 10.2 8.8 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF3450) Spc7 PF08317.11 gi|385803808|ref|YP_005840208.1| - 0.41 9.5 26.1 0.044 12.6 17.2 2.3 1 1 0 2 2 2 0 Spc7 kinetochore protein DUF1664 PF07889.12 gi|385803808|ref|YP_005840208.1| - 2.6 8.1 15.4 0.55 10.3 3.5 3.2 1 1 1 3 3 3 0 Protein of unknown function (DUF1664) EzrA PF06160.12 gi|385803808|ref|YP_005840208.1| - 2.9 6.0 25.6 0.6 8.2 20.6 2.1 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA DUF349 PF03993.12 gi|385803808|ref|YP_005840208.1| - 3 8.2 12.4 25 5.3 5.5 3.3 1 1 1 3 3 3 0 Domain of Unknown Function (DUF349) bZIP_1 PF00170.21 gi|385803808|ref|YP_005840208.1| - 3.4 7.8 21.1 1.6 8.9 3.4 4.0 2 1 2 4 4 4 0 bZIP transcription factor Tox-ODYAM1 PF15642.6 gi|385803808|ref|YP_005840208.1| - 3.8 6.4 11.5 4.9 6.0 11.1 1.3 1 1 0 1 1 1 0 Toxin in Odyssella and Amoebophilus Occludin_ELL PF07303.13 gi|385803808|ref|YP_005840208.1| - 3.8 8.3 16.1 12 6.7 2.6 3.7 2 1 2 4 4 4 0 Occludin homology domain GrpE PF01025.19 gi|385803808|ref|YP_005840208.1| - 5.5 6.6 16.9 2.1 8.0 13.0 2.2 1 1 1 2 2 2 0 GrpE Baculo_PEP_C PF04513.12 gi|385803808|ref|YP_005840208.1| - 6.2 6.9 14.4 0.94 9.5 6.6 3.0 2 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4200 PF13863.6 gi|385803808|ref|YP_005840208.1| - 7.4 7.0 27.4 5.1 7.5 19.0 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) CLZ PF16526.5 gi|385803808|ref|YP_005840208.1| - 9.3 6.7 16.3 7.6 7.0 7.1 3.6 1 1 2 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels PAS PF00989.25 gi|385803809|ref|YP_005840209.1| - 3.9e-17 62.3 0.4 8.8e-14 51.5 0.0 3.1 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.7 gi|385803809|ref|YP_005840209.1| - 3.6e-16 59.3 0.0 1.1e-15 57.8 0.0 1.9 1 0 0 1 1 1 1 PAS domain HisKA_7TM PF16927.5 gi|385803809|ref|YP_005840209.1| - 1.9e-12 47.7 20.8 3e-12 47.0 20.8 1.2 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase PAS_4 PF08448.10 gi|385803809|ref|YP_005840209.1| - 1.4e-09 38.2 0.2 1.1e-06 28.9 0.0 3.4 2 1 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|385803809|ref|YP_005840209.1| - 3.6e-07 30.0 0.1 0.0011 18.9 0.0 3.5 3 0 0 3 3 3 1 PAS domain HATPase_c PF02518.26 gi|385803809|ref|YP_005840209.1| - 1.4e-06 28.8 0.1 8.7e-06 26.2 0.0 2.3 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|385803809|ref|YP_005840209.1| - 1.9e-05 24.9 0.0 4.9e-05 23.5 0.0 1.8 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|385803809|ref|YP_005840209.1| - 0.00045 20.2 0.7 0.0025 17.8 0.7 2.1 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain AmpE PF17113.5 gi|385803809|ref|YP_005840209.1| - 0.0068 15.8 3.9 0.012 14.9 3.9 1.3 1 0 0 1 1 1 1 Regulatory signalling modulator protein AmpE HisKA_4TM PF16926.5 gi|385803809|ref|YP_005840209.1| - 0.013 15.1 0.5 0.044 13.3 0.0 2.1 2 0 0 2 2 2 0 Archaeal 4TM region of histidine kinase HisKA PF00512.25 gi|385803809|ref|YP_005840209.1| - 0.016 15.2 0.3 0.046 13.7 0.3 1.9 1 1 0 1 1 1 0 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 gi|385803809|ref|YP_005840209.1| - 0.04 14.1 0.6 7.7 6.7 0.1 3.4 2 1 1 3 3 3 0 PAS fold GhoS PF11080.8 gi|385803809|ref|YP_005840209.1| - 0.068 13.2 0.8 0.28 11.2 0.0 2.4 3 0 0 3 3 3 0 Endoribonuclease GhoS RPA_C PF08784.11 gi|385803809|ref|YP_005840209.1| - 0.14 12.9 0.7 27 5.5 0.0 2.7 2 0 0 2 2 2 0 Replication protein A C terminal Brr6_like_C_C PF10104.9 gi|385803812|ref|YP_005840212.1| - 0.13 12.0 0.0 0.17 11.6 0.0 1.1 1 0 0 1 1 1 0 Di-sulfide bridge nucleocytoplasmic transport domain Methyltransf_25 PF13649.6 gi|385803813|ref|YP_005840213.1| - 9.3e-08 32.7 0.2 0.0014 19.3 0.0 2.6 2 1 1 3 3 3 2 Methyltransferase domain Methyltransf_11 PF08241.12 gi|385803813|ref|YP_005840213.1| - 1.2e-05 25.8 0.2 0.0038 17.8 0.2 2.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|385803813|ref|YP_005840213.1| - 0.00012 22.7 0.1 0.0013 19.4 0.1 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|385803813|ref|YP_005840213.1| - 0.00058 19.7 0.0 0.0081 16.0 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|385803813|ref|YP_005840213.1| - 0.00067 19.5 0.0 0.0011 18.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain PTPS PF01242.19 gi|385803814|ref|YP_005840214.1| - 2.4e-20 72.7 0.0 2.7e-20 72.6 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase ADH_zinc_N PF00107.26 gi|385803815|ref|YP_005840215.1| - 2.2e-14 53.5 0.0 6.7e-14 52.0 0.0 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|385803815|ref|YP_005840215.1| - 1.2e-05 25.0 0.0 6.5e-05 22.5 0.0 2.0 2 0 0 2 2 2 1 Glucose dehydrogenase C-terminus GCH_III PF05165.12 gi|385803816|ref|YP_005840216.1| - 1.2e-89 299.9 0.2 1.5e-89 299.5 0.2 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase III GGDEF_2 PF17853.1 gi|385803816|ref|YP_005840216.1| - 3.6e-09 36.9 0.4 0.0014 18.8 0.1 2.2 1 1 1 2 2 2 2 GGDEF-like domain mCpol PF18182.1 gi|385803816|ref|YP_005840216.1| - 6.9e-05 23.2 0.0 0.0052 17.1 0.0 2.2 2 0 0 2 2 2 1 minimal CRISPR polymerase domain Sulfatase PF00884.23 gi|385803817|ref|YP_005840217.1| - 2.7e-23 82.8 1.7 4.2e-23 82.2 1.7 1.3 1 0 0 1 1 1 1 Sulfatase zf-CDGSH PF09360.10 gi|385803818|ref|YP_005840218.1| - 1.7e-11 44.2 0.2 3.1e-11 43.3 0.2 1.5 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type ArsA_ATPase PF02374.15 gi|385803819|ref|YP_005840219.1| - 1.4e-74 251.1 0.0 1.6e-74 250.9 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|385803819|ref|YP_005840219.1| - 3.4e-09 36.8 0.2 1.5e-07 31.5 0.0 2.4 2 1 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|385803819|ref|YP_005840219.1| - 9.6e-08 32.1 0.0 4.3e-07 30.0 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 gi|385803819|ref|YP_005840219.1| - 0.00011 21.8 0.1 0.00029 20.4 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.9 gi|385803819|ref|YP_005840219.1| - 0.00015 21.3 0.4 0.0017 17.9 0.0 2.1 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|385803819|ref|YP_005840219.1| - 0.0047 16.4 0.0 0.0077 15.7 0.0 1.4 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ PhoH PF02562.16 gi|385803819|ref|YP_005840219.1| - 0.014 14.8 0.0 0.028 13.9 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_25 PF13481.6 gi|385803819|ref|YP_005840219.1| - 0.017 14.7 1.2 0.056 13.0 1.2 2.0 1 1 0 1 1 1 0 AAA domain DprA_WH PF17782.1 gi|385803819|ref|YP_005840219.1| - 0.042 14.0 0.1 0.11 12.6 0.1 1.7 1 0 0 1 1 1 0 DprA winged helix domain ATPase PF06745.13 gi|385803819|ref|YP_005840219.1| - 0.058 12.7 0.0 0.9 8.8 0.0 2.2 1 1 1 2 2 2 0 KaiC AAA_24 PF13479.6 gi|385803819|ref|YP_005840219.1| - 0.066 12.9 0.0 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|385803819|ref|YP_005840219.1| - 0.077 12.0 0.6 0.47 9.4 0.1 2.0 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54 PF00448.22 gi|385803819|ref|YP_005840219.1| - 0.11 12.1 0.5 0.67 9.5 0.1 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DPRP PF04244.13 gi|385803820|ref|YP_005840220.1| - 2.6e-55 187.7 0.0 1.9e-54 184.9 0.0 2.0 2 0 0 2 2 2 1 Deoxyribodipyrimidine photo-lyase-related protein FAD_binding_7 PF03441.14 gi|385803820|ref|YP_005840220.1| - 0.0007 19.1 1.6 0.0038 16.7 0.3 2.7 3 0 0 3 3 3 1 FAD binding domain of DNA photolyase LPD39 PF18858.1 gi|385803820|ref|YP_005840220.1| - 0.055 13.5 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Large polyvalent protein associated domain 39 RVT_3 PF13456.6 gi|385803821|ref|YP_005840221.1| - 1.1e-12 47.8 0.0 1.5e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|385803821|ref|YP_005840221.1| - 2e-09 37.8 0.0 2.8e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 RNase H TrmB PF01978.19 gi|385803822|ref|YP_005840222.1| - 1.7e-08 34.2 0.0 2.5e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|385803822|ref|YP_005840222.1| - 0.00089 18.8 0.1 0.004 16.7 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|385803822|ref|YP_005840222.1| - 0.0012 18.7 0.1 0.0042 16.9 0.1 2.0 2 1 0 2 2 2 1 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.17 gi|385803822|ref|YP_005840222.1| - 0.0044 16.9 0.0 0.0057 16.5 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit MarR_2 PF12802.7 gi|385803822|ref|YP_005840222.1| - 0.0068 16.3 0.0 0.016 15.1 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|385803822|ref|YP_005840222.1| - 0.0073 16.2 0.1 0.026 14.4 0.1 1.9 2 0 0 2 2 2 1 MarR family Desulfoferrod_N PF06397.12 gi|385803822|ref|YP_005840222.1| - 0.0085 15.7 3.5 0.024 14.3 3.5 1.8 1 1 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain HTH_IclR PF09339.10 gi|385803822|ref|YP_005840222.1| - 0.013 15.3 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|385803822|ref|YP_005840222.1| - 0.072 13.5 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator DUF2576 PF10845.8 gi|385803822|ref|YP_005840222.1| - 0.075 12.6 0.1 0.35 10.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2576) HTH_20 PF12840.7 gi|385803822|ref|YP_005840222.1| - 0.11 12.6 0.5 0.22 11.6 0.2 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|385803822|ref|YP_005840222.1| - 0.17 11.9 0.0 0.4 10.7 0.0 1.7 2 0 0 2 2 2 0 HTH domain zf-piccolo PF05715.13 gi|385803823|ref|YP_005840223.1| - 0.089 12.9 3.8 0.31 11.2 3.8 1.8 1 1 0 1 1 1 0 Piccolo Zn-finger C1_2 PF03107.16 gi|385803823|ref|YP_005840223.1| - 0.093 13.1 0.6 8.8 6.7 0.0 2.2 2 0 0 2 2 2 0 C1 domain Rubredoxin_2 PF18073.1 gi|385803823|ref|YP_005840223.1| - 0.13 12.0 0.4 0.13 12.0 0.4 1.9 2 0 0 2 2 2 0 Rubredoxin metal binding domain DUF1440 PF07274.12 gi|385803824|ref|YP_005840224.1| - 0.99 9.8 4.7 1.2 9.5 1.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1440) MFS_1 PF07690.16 gi|385803825|ref|YP_005840225.1| - 3.6e-33 115.0 66.2 1.2e-28 100.0 38.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily EamA PF00892.20 gi|385803826|ref|YP_005840226.1| - 1.3e-28 99.9 39.0 1.6e-16 60.7 13.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family FAD_binding_2 PF00890.24 gi|385803827|ref|YP_005840227.1| - 1.7e-89 300.8 6.7 2.3e-89 300.4 6.7 1.2 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|385803827|ref|YP_005840227.1| - 2.1e-17 63.3 0.0 6.7e-17 61.7 0.0 1.8 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|385803827|ref|YP_005840227.1| - 3.6e-08 33.0 0.5 0.0027 17.0 0.1 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|385803827|ref|YP_005840227.1| - 1.6e-07 31.3 3.9 3.3e-07 30.2 2.3 2.2 2 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|385803827|ref|YP_005840227.1| - 7.9e-05 22.1 0.1 0.00054 19.3 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|385803827|ref|YP_005840227.1| - 8.9e-05 21.9 1.0 0.00017 20.9 0.3 1.7 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|385803827|ref|YP_005840227.1| - 0.00011 21.1 1.5 0.12 11.0 0.0 2.8 3 0 0 3 3 3 2 HI0933-like protein GIDA PF01134.22 gi|385803827|ref|YP_005840227.1| - 0.0054 15.9 1.2 0.044 12.9 1.2 2.1 1 1 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|385803827|ref|YP_005840227.1| - 0.69 10.2 3.1 1.1 9.5 1.2 2.4 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain YdjM PF04307.14 gi|385803828|ref|YP_005840228.1| - 9.2e-10 38.1 13.5 4.8e-09 35.8 13.5 1.9 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF3976 PF13121.6 gi|385803828|ref|YP_005840228.1| - 0.11 12.6 0.9 0.11 12.6 0.9 2.7 3 1 0 3 3 3 0 Domain of unknown function (DUF3976) PDGLE PF13190.6 gi|385803828|ref|YP_005840228.1| - 3.2 7.7 6.8 12 5.9 0.7 3.1 2 1 1 3 3 3 0 PDGLE domain DUF3099 PF11298.8 gi|385803828|ref|YP_005840228.1| - 4.3 7.5 7.0 12 6.1 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3099) DUF4235 PF14019.6 gi|385803828|ref|YP_005840228.1| - 5.3 7.2 6.5 3.2 7.9 1.4 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF4235) VKOR PF07884.14 gi|385803829|ref|YP_005840229.1| - 0.086 13.0 0.5 0.1 12.8 0.5 1.0 1 0 0 1 1 1 0 Vitamin K epoxide reductase family zinc_ribbon_9 PF14369.6 gi|385803830|ref|YP_005840230.1| - 0.0024 18.1 0.5 0.0032 17.7 0.5 1.2 1 0 0 1 1 1 1 zinc-ribbon Zn-ribbon_8 PF09723.10 gi|385803830|ref|YP_005840230.1| - 0.015 15.4 0.5 0.018 15.2 0.5 1.1 1 0 0 1 1 1 0 Zinc ribbon domain ADK_lid PF05191.14 gi|385803830|ref|YP_005840230.1| - 0.041 13.9 0.3 0.047 13.7 0.3 1.1 1 0 0 1 1 1 0 Adenylate kinase, active site lid zf-TFIIB PF13453.6 gi|385803830|ref|YP_005840230.1| - 0.056 12.8 1.3 0.066 12.6 1.3 1.2 1 0 0 1 1 1 0 Transcription factor zinc-finger zf-C2H2_4 PF13894.6 gi|385803830|ref|YP_005840230.1| - 0.14 13.1 1.5 5.4 8.1 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_4 PF13717.6 gi|385803830|ref|YP_005840230.1| - 3.9 7.5 7.0 2.6 8.1 1.6 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Pyr_redox_2 PF07992.14 gi|385803831|ref|YP_005840231.1| - 4.3e-10 39.3 0.1 8.9e-10 38.3 0.1 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|385803831|ref|YP_005840231.1| - 6.5e-08 32.1 2.1 1.1e-07 31.3 1.3 1.7 1 1 1 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|385803831|ref|YP_005840231.1| - 6.8e-08 32.0 3.4 2.9e-06 26.6 0.1 2.9 1 1 1 3 3 3 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|385803831|ref|YP_005840231.1| - 2.6e-07 30.2 1.1 0.0042 16.4 0.6 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|385803831|ref|YP_005840231.1| - 1.9e-05 24.4 1.7 0.00031 20.4 1.1 2.4 1 1 1 3 3 3 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|385803831|ref|YP_005840231.1| - 3.2e-05 22.8 0.3 0.00023 20.0 0.2 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 gi|385803831|ref|YP_005840231.1| - 5e-05 22.8 1.5 8.8e-05 22.0 1.5 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|385803831|ref|YP_005840231.1| - 0.00011 21.6 1.3 0.00017 21.0 1.3 1.5 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|385803831|ref|YP_005840231.1| - 0.00035 19.9 0.1 0.00053 19.3 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|385803831|ref|YP_005840231.1| - 0.00056 20.1 0.1 0.0014 18.9 0.1 1.6 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|385803831|ref|YP_005840231.1| - 0.0022 17.3 0.2 0.0095 15.2 0.1 1.9 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.27 gi|385803831|ref|YP_005840231.1| - 0.0039 17.7 0.6 0.0083 16.7 0.6 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Cas_Csy2 PF09614.10 gi|385803831|ref|YP_005840231.1| - 0.0041 16.5 0.0 0.0048 16.3 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csy2) Lycopene_cycl PF05834.12 gi|385803831|ref|YP_005840231.1| - 0.009 15.1 1.5 0.024 13.7 0.8 1.8 1 1 1 2 2 2 1 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|385803831|ref|YP_005840231.1| - 0.02 14.8 0.8 0.041 13.8 0.8 1.7 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|385803831|ref|YP_005840231.1| - 0.12 12.8 0.0 0.24 11.8 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding BALF1 PF06861.11 gi|385803832|ref|YP_005840232.1| - 0.037 13.7 0.0 0.056 13.1 0.0 1.3 1 0 0 1 1 1 0 BALF1 protein adh_short PF00106.25 gi|385803833|ref|YP_005840233.1| - 5.2e-53 179.4 0.2 7.7e-53 178.8 0.2 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|385803833|ref|YP_005840233.1| - 5e-42 144.1 0.8 6.7e-42 143.6 0.8 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|385803833|ref|YP_005840233.1| - 3.1e-14 53.3 0.2 4.9e-14 52.6 0.2 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|385803833|ref|YP_005840233.1| - 0.00041 19.9 0.3 0.00092 18.7 0.2 1.8 1 1 1 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|385803833|ref|YP_005840233.1| - 0.0011 18.9 4.5 0.0027 17.6 4.5 1.7 1 1 0 1 1 1 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|385803833|ref|YP_005840233.1| - 0.0011 18.1 0.0 0.0015 17.7 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein F420_oxidored PF03807.17 gi|385803833|ref|YP_005840233.1| - 0.0049 17.4 0.3 0.01 16.4 0.3 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|385803833|ref|YP_005840233.1| - 0.01 15.5 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ADH_zinc_N PF00107.26 gi|385803833|ref|YP_005840233.1| - 0.013 15.5 1.1 0.17 11.9 1.1 2.2 1 1 0 1 1 1 0 Zinc-binding dehydrogenase NAD_binding_7 PF13241.6 gi|385803833|ref|YP_005840233.1| - 0.028 14.9 0.3 0.057 13.9 0.3 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|385803833|ref|YP_005840233.1| - 0.03 14.2 4.0 0.087 12.7 2.0 2.5 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|385803833|ref|YP_005840233.1| - 0.041 13.2 0.0 0.08 12.3 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LPD7 PF18821.1 gi|385803833|ref|YP_005840233.1| - 0.047 13.8 0.8 2.9 8.1 0.2 2.7 2 0 0 2 2 2 0 Large polyvalent protein-associated domain 7 GDP_Man_Dehyd PF16363.5 gi|385803833|ref|YP_005840233.1| - 0.05 13.0 0.0 0.085 12.2 0.0 1.3 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase NAD_Gly3P_dh_N PF01210.23 gi|385803833|ref|YP_005840233.1| - 0.079 12.9 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Bmp PF02608.14 gi|385803834|ref|YP_005840234.1| - 3.8e-52 177.2 5.1 9.9e-52 175.8 5.1 1.5 1 1 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Peripla_BP_4 PF13407.6 gi|385803834|ref|YP_005840234.1| - 0.001 18.7 5.5 0.0022 17.6 5.4 1.4 1 1 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.9 gi|385803834|ref|YP_005840234.1| - 0.026 14.4 0.7 0.026 14.4 0.7 2.2 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_2 PF02653.16 gi|385803836|ref|YP_005840236.1| - 3.5e-42 144.4 29.5 3.5e-42 144.4 29.5 2.0 1 1 1 2 2 2 2 Branched-chain amino acid transport system / permease component DUF1378 PF07125.11 gi|385803836|ref|YP_005840236.1| - 0.088 13.0 0.7 0.27 11.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1378) BPD_transp_2 PF02653.16 gi|385803837|ref|YP_005840237.1| - 2.6e-37 128.4 35.2 2.6e-37 128.4 35.2 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component Proteasome PF00227.26 gi|385803838|ref|YP_005840238.1| - 9.5e-53 178.5 0.0 1.2e-52 178.2 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|385803838|ref|YP_005840238.1| - 3.3e-12 45.9 0.1 5.5e-12 45.1 0.1 1.4 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature DUF4169 PF13770.6 gi|385803838|ref|YP_005840238.1| - 0.071 13.4 0.1 0.15 12.4 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4169) DHFR_1 PF00186.19 gi|385803839|ref|YP_005840239.1| - 5.5e-47 159.5 0.0 6.8e-47 159.2 0.0 1.1 1 0 0 1 1 1 1 Dihydrofolate reductase Thymidylat_synt PF00303.19 gi|385803840|ref|YP_005840240.1| - 3.3e-91 305.2 0.0 4e-91 304.9 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase Lactamase_B PF00753.27 gi|385803841|ref|YP_005840241.1| - 2.2e-15 57.2 4.0 1.4e-13 51.3 4.0 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|385803841|ref|YP_005840241.1| - 8.7e-06 25.4 1.7 1.2e-05 24.9 1.7 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Tnp_DNA_bind PF14706.6 gi|385803844|ref|YP_005840244.1| - 9.1e-23 79.9 0.0 1.6e-22 79.1 0.0 1.4 1 0 0 1 1 1 1 Transposase DNA-binding DDE_Tnp_1 PF01609.21 gi|385803844|ref|YP_005840244.1| - 5.2e-08 32.8 0.0 1.1e-07 31.7 0.0 1.6 1 1 0 1 1 1 1 Transposase DDE domain Dimer_Tnp_Tn5 PF02281.16 gi|385803844|ref|YP_005840244.1| - 1.1e-07 31.4 0.1 2.8e-07 30.2 0.1 1.8 1 1 0 1 1 1 1 Transposase Tn5 dimerisation domain Sod_Fe_N PF00081.22 gi|385803845|ref|YP_005840245.1| - 8.9e-28 96.6 0.7 1.4e-27 96.0 0.7 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Sod_Fe_C PF02777.18 gi|385803845|ref|YP_005840245.1| - 1.9e-27 95.4 0.0 3.4e-27 94.6 0.0 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain DUF2237 PF09996.9 gi|385803846|ref|YP_005840246.1| - 1.8e-48 163.3 0.0 2.1e-48 163.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2237) FAD_binding_7 PF03441.14 gi|385803847|ref|YP_005840247.1| - 1.8e-81 272.5 1.4 2.4e-81 272.0 1.4 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|385803847|ref|YP_005840247.1| - 8e-43 146.3 0.0 2.8e-42 144.5 0.0 1.8 2 0 0 2 2 2 1 DNA photolyase tRNA_m1G_MT PF01746.21 gi|385803847|ref|YP_005840247.1| - 0.058 13.1 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 tRNA (Guanine-1)-methyltransferase MAF_flag10 PF01973.18 gi|385803848|ref|YP_005840248.1| - 4.9e-16 58.9 0.0 6.6e-16 58.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 Pterin_bind PF00809.22 gi|385803849|ref|YP_005840249.1| - 1.4e-37 129.7 0.0 2.5e-37 128.9 0.0 1.4 1 0 0 1 1 1 1 Pterin binding enzyme SpoU_methylase PF00588.19 gi|385803851|ref|YP_005840251.1| - 5.6e-31 107.6 0.0 8.9e-31 107.0 0.0 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family GatB_N PF02934.15 gi|385803852|ref|YP_005840252.1| - 3.7e-65 220.0 0.0 5e-65 219.6 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|385803852|ref|YP_005840252.1| - 6.1e-20 71.6 0.1 1.7e-19 70.2 0.0 1.8 2 0 0 2 2 2 1 GatB domain GAD PF02938.14 gi|385803852|ref|YP_005840252.1| - 1e-13 51.3 0.0 2.4e-13 50.1 0.0 1.6 1 0 0 1 1 1 1 GAD domain YqeY PF09424.10 gi|385803852|ref|YP_005840252.1| - 0.0037 17.3 0.4 0.011 15.8 0.4 1.8 1 0 0 1 1 1 1 Yqey-like protein CinA_KH PF18146.1 gi|385803852|ref|YP_005840252.1| - 6.5 7.0 6.5 4.2 7.6 0.3 3.0 3 0 0 3 3 3 0 Damage-inducible protein CinA KH domain Zn-ribbon_8 PF09723.10 gi|385803853|ref|YP_005840253.1| - 0.00089 19.3 1.2 0.0011 19.0 1.2 1.3 1 0 0 1 1 1 1 Zinc ribbon domain zf_UBZ PF18439.1 gi|385803853|ref|YP_005840253.1| - 0.0018 17.8 1.5 0.44 10.2 0.1 2.2 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger RNA_POL_M_15KD PF02150.16 gi|385803853|ref|YP_005840253.1| - 0.0021 17.9 1.1 0.014 15.2 0.1 2.1 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit DZR PF12773.7 gi|385803853|ref|YP_005840253.1| - 0.0024 17.8 0.9 0.0026 17.8 0.9 1.1 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|385803853|ref|YP_005840253.1| - 0.0044 17.0 0.2 0.0044 17.0 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|385803853|ref|YP_005840253.1| - 0.013 15.4 0.5 0.56 10.2 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_6 PF13912.6 gi|385803853|ref|YP_005840253.1| - 0.04 13.9 2.8 1.9 8.6 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger C1_2 PF03107.16 gi|385803853|ref|YP_005840253.1| - 0.043 14.2 0.6 0.062 13.6 0.6 1.2 1 0 0 1 1 1 0 C1 domain A2L_zn_ribbon PF08792.10 gi|385803853|ref|YP_005840253.1| - 0.044 13.5 1.5 1.6 8.6 0.1 2.5 3 0 0 3 3 3 0 A2L zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|385803853|ref|YP_005840253.1| - 0.057 13.3 3.3 0.83 9.6 0.2 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Lyase_1 PF00206.20 gi|385803854|ref|YP_005840254.1| - 1.1e-103 347.0 0.1 1.4e-103 346.6 0.1 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|385803854|ref|YP_005840254.1| - 9.8e-23 80.3 0.1 3.4e-22 78.6 0.1 2.0 1 0 0 1 1 1 1 Fumarase C C-terminus BolA PF01722.18 gi|385803855|ref|YP_005840255.1| - 8e-20 70.9 0.1 8.9e-20 70.8 0.1 1.1 1 0 0 1 1 1 1 BolA-like protein Aph-1 PF06105.12 gi|385803856|ref|YP_005840256.1| - 0.0068 15.8 4.0 0.012 15.0 0.0 2.0 1 1 1 2 2 2 1 Aph-1 protein CxC1 PF18802.1 gi|385803856|ref|YP_005840256.1| - 0.026 14.7 0.0 0.033 14.4 0.0 1.1 1 0 0 1 1 1 0 CxC1 like cysteine cluster associated with KDZ transposases BPD_transp_1 PF00528.22 gi|385803857|ref|YP_005840257.1| - 3.6e-33 114.9 7.7 3.6e-33 114.9 7.7 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|385803857|ref|YP_005840257.1| - 0.0012 18.8 0.1 0.0012 18.8 0.1 3.0 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|385803858|ref|YP_005840258.1| - 1.5e-36 125.9 13.1 2.3e-36 125.3 13.1 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|385803859|ref|YP_005840259.1| - 2.3e-78 263.8 1.1 3.1e-78 263.4 1.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|385803859|ref|YP_005840259.1| - 1.8e-06 27.5 4.3 3.8e-06 26.5 4.3 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Flot PF15975.5 gi|385803859|ref|YP_005840259.1| - 0.23 11.6 0.9 0.71 10.1 0.0 2.1 2 0 0 2 2 2 0 Flotillin ABC_tran PF00005.27 gi|385803860|ref|YP_005840260.1| - 1.2e-57 194.3 0.0 1.6e-29 103.1 0.0 2.6 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|385803860|ref|YP_005840260.1| - 1.7e-39 134.1 0.9 9.6e-21 74.1 0.1 2.6 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|385803860|ref|YP_005840260.1| - 3.6e-11 42.9 0.0 2.1e-06 27.3 0.0 3.1 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|385803860|ref|YP_005840260.1| - 1.5e-10 41.4 2.8 3e-05 24.0 0.0 4.1 4 1 0 5 5 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|385803860|ref|YP_005840260.1| - 4.3e-07 30.5 0.2 0.011 16.1 0.0 2.8 3 0 0 3 3 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|385803860|ref|YP_005840260.1| - 5.9e-06 26.6 4.7 0.0024 18.1 0.7 3.7 3 1 0 3 3 2 1 AAA domain ATP-synt_ab PF00006.25 gi|385803860|ref|YP_005840260.1| - 0.0003 20.5 0.2 0.031 13.9 0.0 3.1 2 1 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.6 gi|385803860|ref|YP_005840260.1| - 0.00038 20.1 1.6 0.63 9.8 0.2 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|385803860|ref|YP_005840260.1| - 0.00055 19.5 0.1 0.43 10.1 0.0 2.4 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_5 PF07728.14 gi|385803860|ref|YP_005840260.1| - 0.0014 18.6 0.0 0.56 10.2 0.0 2.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AIG1 PF04548.16 gi|385803860|ref|YP_005840260.1| - 0.0017 17.7 0.7 0.1 11.9 0.2 2.4 2 0 0 2 2 2 1 AIG1 family AAA_25 PF13481.6 gi|385803860|ref|YP_005840260.1| - 0.002 17.7 1.7 12 5.4 0.0 4.4 4 0 0 4 4 4 0 AAA domain RsgA_GTPase PF03193.16 gi|385803860|ref|YP_005840260.1| - 0.0074 16.2 0.2 1.2 9.0 0.0 2.5 2 0 0 2 2 2 1 RsgA GTPase Sigma54_activat PF00158.26 gi|385803860|ref|YP_005840260.1| - 0.036 13.8 0.9 8.1 6.1 0.0 3.2 4 0 0 4 4 4 0 Sigma-54 interaction domain Hpr_kinase_C PF07475.12 gi|385803860|ref|YP_005840260.1| - 0.054 13.0 1.3 3.7 7.0 0.0 2.4 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain PRK PF00485.18 gi|385803860|ref|YP_005840260.1| - 0.065 13.0 0.1 0.95 9.2 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_30 PF13604.6 gi|385803860|ref|YP_005840260.1| - 0.066 12.9 0.4 2.8 7.6 0.0 2.5 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|385803860|ref|YP_005840260.1| - 0.074 13.4 0.0 5.1 7.5 0.0 2.6 2 0 0 2 2 2 0 RNA helicase AAA PF00004.29 gi|385803860|ref|YP_005840260.1| - 0.1 13.0 0.0 4.6 7.7 0.0 3.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|385803860|ref|YP_005840260.1| - 0.12 11.6 0.6 0.9 8.8 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin NB-ARC PF00931.22 gi|385803860|ref|YP_005840260.1| - 0.12 11.5 0.1 4.9 6.3 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain DUF87 PF01935.17 gi|385803860|ref|YP_005840260.1| - 0.13 12.3 1.5 18 5.4 0.1 2.7 2 0 0 2 2 2 0 Helicase HerA, central domain NACHT PF05729.12 gi|385803860|ref|YP_005840260.1| - 0.13 12.1 0.8 4 7.3 0.1 2.5 2 0 0 2 2 2 0 NACHT domain Mg_chelatase PF01078.21 gi|385803860|ref|YP_005840260.1| - 0.16 11.4 0.0 19 4.6 0.0 3.0 4 0 0 4 4 4 0 Magnesium chelatase, subunit ChlI ATPase PF06745.13 gi|385803860|ref|YP_005840260.1| - 0.18 11.2 0.3 8.3 5.7 0.0 2.5 2 0 0 2 2 2 0 KaiC DUF3530 PF12048.8 gi|385803861|ref|YP_005840261.1| - 0.081 12.3 0.1 0.093 12.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3530) DUF3464 PF11947.8 gi|385803862|ref|YP_005840262.1| - 0.15 11.8 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 Photosynthesis affected mutant 68 HhH-GPD PF00730.25 gi|385803863|ref|YP_005840263.1| - 3.1e-13 50.1 0.0 5e-13 49.4 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|385803863|ref|YP_005840263.1| - 4.5e-09 35.7 0.0 8.7e-09 34.8 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif MoCF_biosynth PF00994.24 gi|385803865|ref|YP_005840265.1| - 7.4e-36 123.0 0.4 1.2e-35 122.3 0.4 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain CinA_KH PF18146.1 gi|385803865|ref|YP_005840265.1| - 0.086 13.0 0.1 0.26 11.5 0.0 1.8 2 0 0 2 2 2 0 Damage-inducible protein CinA KH domain DUF3459 PF11941.8 gi|385803866|ref|YP_005840266.1| - 0.068 13.5 0.1 25 5.3 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF3459) TauE PF01925.19 gi|385803866|ref|YP_005840266.1| - 0.24 11.0 2.4 0.24 11.0 0.7 1.7 2 0 0 2 2 2 0 Sulfite exporter TauE/SafE DUF2110 PF09883.9 gi|385803867|ref|YP_005840267.1| - 2.3e-85 285.7 0.0 2.9e-85 285.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) TFIIE_alpha PF02002.17 gi|385803868|ref|YP_005840268.1| - 1.1e-19 70.2 0.1 2.1e-19 69.3 0.0 1.5 2 0 0 2 2 2 1 TFIIE alpha subunit Sigma70_r3 PF04539.16 gi|385803868|ref|YP_005840268.1| - 0.0037 17.3 0.0 0.0078 16.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-70 region 3 HSBP1 PF06825.12 gi|385803868|ref|YP_005840268.1| - 0.028 14.3 2.1 0.12 12.2 0.3 2.2 2 0 0 2 2 2 0 Heat shock factor binding protein 1 HTH_20 PF12840.7 gi|385803868|ref|YP_005840268.1| - 0.034 14.2 0.6 0.091 12.8 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Trm56 PF01994.16 gi|385803869|ref|YP_005840269.1| - 1.7e-45 153.7 0.0 2.3e-45 153.3 0.0 1.2 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 Phage_min_tail PF05939.13 gi|385803869|ref|YP_005840269.1| - 0.04 14.3 0.0 0.073 13.5 0.0 1.4 1 0 0 1 1 1 0 Phage minor tail protein DAO PF01266.24 gi|385803870|ref|YP_005840270.1| - 1.6e-19 70.8 0.0 2.1e-19 70.3 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|385803870|ref|YP_005840270.1| - 0.11 13.1 0.1 0.21 12.2 0.1 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Ph1570 PF09638.10 gi|385803870|ref|YP_005840270.1| - 0.14 12.0 0.0 0.42 10.5 0.0 1.7 2 0 0 2 2 2 0 Ph1570 protein Epimerase PF01370.21 gi|385803871|ref|YP_005840271.1| - 8.8e-49 166.1 0.0 1.1e-48 165.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|385803871|ref|YP_005840271.1| - 8.1e-38 130.6 0.0 1.4e-37 129.9 0.0 1.4 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|385803871|ref|YP_005840271.1| - 1.2e-20 73.8 0.0 1.5e-20 73.5 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|385803871|ref|YP_005840271.1| - 1.9e-15 56.8 0.1 1.3e-14 54.0 0.1 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|385803871|ref|YP_005840271.1| - 1.1e-14 54.2 0.0 1.4e-14 53.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|385803871|ref|YP_005840271.1| - 1.3e-08 34.9 0.0 2.1e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|385803871|ref|YP_005840271.1| - 1.8e-08 33.9 0.1 2.8e-06 26.7 0.0 2.8 1 1 1 2 2 2 1 Male sterility protein adh_short PF00106.25 gi|385803871|ref|YP_005840271.1| - 0.0002 20.9 0.2 0.014 14.8 0.0 2.4 2 0 0 2 2 2 1 short chain dehydrogenase TrkA_N PF02254.18 gi|385803871|ref|YP_005840271.1| - 0.0021 18.3 0.1 0.0041 17.4 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain Ldh_1_N PF00056.23 gi|385803871|ref|YP_005840271.1| - 0.0063 16.6 0.2 0.012 15.7 0.2 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|385803871|ref|YP_005840271.1| - 0.02 15.2 0.1 0.037 14.3 0.1 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DUF1188 PF06690.11 gi|385803871|ref|YP_005840271.1| - 0.13 11.7 1.2 0.32 10.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) DUF2797 PF10977.8 gi|385803872|ref|YP_005840272.1| - 1.5e-47 162.5 3.2 2.4e-47 161.8 3.2 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF2797) GDA1_CD39 PF01150.17 gi|385803872|ref|YP_005840272.1| - 0.15 10.7 0.1 0.19 10.3 0.1 1.2 1 0 0 1 1 1 0 GDA1/CD39 (nucleoside phosphatase) family DUF3391 PF11871.8 gi|385803873|ref|YP_005840273.1| - 0.017 15.7 0.3 0.028 15.0 0.3 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3391) MutS_III PF05192.18 gi|385803873|ref|YP_005840273.1| - 0.065 13.5 0.0 0.08 13.2 0.0 1.1 1 0 0 1 1 1 0 MutS domain III CDC45 PF02724.14 gi|385803873|ref|YP_005840273.1| - 0.065 11.5 0.3 0.062 11.6 0.3 1.1 1 0 0 1 1 1 0 CDC45-like protein rRNA_processing PF08524.11 gi|385803873|ref|YP_005840273.1| - 0.2 11.7 5.3 0.37 10.8 5.3 1.3 1 0 0 1 1 1 0 rRNA processing ABC_trans_N PF14510.6 gi|385803873|ref|YP_005840273.1| - 0.25 12.0 1.8 8.8 7.0 0.0 2.2 2 0 0 2 2 2 0 ABC-transporter N-terminal Cwf_Cwc_15 PF04889.12 gi|385803873|ref|YP_005840273.1| - 6.2 6.5 22.7 3.8 7.2 14.9 2.0 2 0 0 2 2 2 0 Cwf15/Cwc15 cell cycle control protein IU_nuc_hydro PF01156.19 gi|385803874|ref|YP_005840274.1| - 1.6e-73 247.9 5.6 1.9e-73 247.7 5.6 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase DUF1593 PF07632.11 gi|385803874|ref|YP_005840274.1| - 0.13 11.7 0.1 0.25 10.7 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1593) Glycos_transf_1 PF00534.20 gi|385803875|ref|YP_005840275.1| - 5.1e-28 97.7 0.0 5.1e-26 91.2 0.0 2.3 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|385803875|ref|YP_005840275.1| - 1.3e-23 83.9 0.1 2.2e-23 83.1 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|385803875|ref|YP_005840275.1| - 2.5e-19 70.0 0.0 1.3e-18 67.7 0.0 2.2 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|385803875|ref|YP_005840275.1| - 1.7e-12 48.1 0.2 3.5e-12 47.1 0.1 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|385803875|ref|YP_005840275.1| - 0.00059 19.9 0.0 0.0022 18.1 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_4 PF13692.6 gi|385803876|ref|YP_005840276.1| - 2e-19 70.4 0.0 3.1e-17 63.3 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|385803876|ref|YP_005840276.1| - 3.6e-18 65.7 0.0 1.4e-17 63.7 0.0 1.9 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|385803876|ref|YP_005840276.1| - 1.2e-17 64.5 0.0 2e-17 63.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|385803876|ref|YP_005840276.1| - 2.1e-10 40.8 0.1 4e-10 40.0 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|385803876|ref|YP_005840276.1| - 1.2e-08 35.6 0.0 1.8e-08 35.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Rpr2 PF04032.16 gi|385803877|ref|YP_005840277.1| - 1.1e-11 44.8 0.2 1.4e-11 44.6 0.2 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-RING_7 PF02591.15 gi|385803877|ref|YP_005840277.1| - 0.0049 17.0 2.6 0.012 15.7 1.1 2.2 2 0 0 2 2 2 1 C4-type zinc ribbon domain DUF1771 PF08590.10 gi|385803877|ref|YP_005840277.1| - 0.027 14.8 0.3 0.042 14.2 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1771) DNA_RNApol_7kD PF03604.13 gi|385803877|ref|YP_005840277.1| - 0.079 12.7 1.4 0.12 12.1 0.1 1.8 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit CRS1_YhbY PF01985.21 gi|385803878|ref|YP_005840278.1| - 6.2e-13 48.7 0.0 7.7e-13 48.4 0.0 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain MS_channel PF00924.18 gi|385803879|ref|YP_005840279.1| - 2.6e-48 164.3 0.1 4e-48 163.7 0.1 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel TAT_signal PF10518.9 gi|385803879|ref|YP_005840279.1| - 0.44 10.5 3.6 0.95 9.4 3.6 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HD PF01966.22 gi|385803880|ref|YP_005840280.1| - 2.2e-09 37.6 1.4 3.6e-09 36.9 1.4 1.4 1 0 0 1 1 1 1 HD domain DUF2384 PF09722.10 gi|385803880|ref|YP_005840280.1| - 0.045 13.8 0.2 0.3 11.1 0.1 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF2384) MttA_Hcf106 PF02416.16 gi|385803881|ref|YP_005840281.1| - 5.4e-15 54.4 0.0 6.2e-15 54.3 0.0 1.2 1 0 0 1 1 1 1 mttA/Hcf106 family NSP2-B_epitope PF14757.6 gi|385803881|ref|YP_005840281.1| - 0.0071 16.1 0.3 0.0081 15.9 0.3 1.0 1 0 0 1 1 1 1 Immunogenic region of nsp2 protein of arterivirus polyprotein MatE PF01554.18 gi|385803882|ref|YP_005840282.1| - 4.8e-61 205.1 36.3 9.2e-35 119.7 15.8 2.7 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|385803882|ref|YP_005840282.1| - 7.3e-10 39.1 5.4 7.3e-10 39.1 5.4 4.6 4 3 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Glycos_transf_1 PF00534.20 gi|385803884|ref|YP_005840284.1| - 2.9e-28 98.5 0.0 5.1e-28 97.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|385803884|ref|YP_005840284.1| - 9.6e-25 87.6 0.0 1.6e-24 86.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|385803884|ref|YP_005840284.1| - 1.5e-20 73.9 0.0 2.8e-20 73.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|385803884|ref|YP_005840284.1| - 4.1e-16 59.8 0.4 7.2e-16 59.0 0.4 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|385803884|ref|YP_005840284.1| - 4.3e-06 26.6 0.1 0.12 12.1 0.0 2.8 1 1 1 2 2 2 2 Starch synthase catalytic domain RibD_C PF01872.17 gi|385803885|ref|YP_005840285.1| - 1.3e-49 168.8 0.1 1.4e-49 168.6 0.1 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Herpes_UL56 PF04534.12 gi|385803885|ref|YP_005840285.1| - 0.011 15.2 1.1 0.017 14.6 0.3 1.7 2 1 0 2 2 2 0 Herpesvirus UL56 protein Sugar-bind PF04198.13 gi|385803885|ref|YP_005840285.1| - 0.061 12.4 0.0 0.14 11.3 0.0 1.5 2 0 0 2 2 2 0 Putative sugar-binding domain Thioredoxin PF00085.20 gi|385803886|ref|YP_005840286.1| - 2.1e-27 95.1 0.0 2.4e-27 94.9 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|385803886|ref|YP_005840286.1| - 6.5e-07 29.8 0.1 2.9e-05 24.5 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|385803886|ref|YP_005840286.1| - 0.00091 19.2 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_8 PF13905.6 gi|385803886|ref|YP_005840286.1| - 0.0011 19.3 0.0 0.0061 16.9 0.0 2.1 1 1 2 3 3 3 1 Thioredoxin-like Thioredoxin_7 PF13899.6 gi|385803886|ref|YP_005840286.1| - 0.0045 17.1 0.0 0.0074 16.4 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_9 PF14595.6 gi|385803886|ref|YP_005840286.1| - 0.019 14.7 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin HyaE PF07449.11 gi|385803886|ref|YP_005840286.1| - 0.076 13.0 0.0 0.15 12.0 0.0 1.5 2 0 0 2 2 2 0 Hydrogenase-1 expression protein HyaE OST3_OST6 PF04756.13 gi|385803886|ref|YP_005840286.1| - 0.082 12.2 0.0 0.095 12.0 0.0 1.2 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family Redoxin PF08534.10 gi|385803886|ref|YP_005840286.1| - 0.13 12.0 0.0 0.25 11.1 0.0 1.5 1 1 0 1 1 1 0 Redoxin Glutaredoxin PF00462.24 gi|385803886|ref|YP_005840286.1| - 0.14 12.4 0.0 0.24 11.7 0.0 1.4 1 0 0 1 1 1 0 Glutaredoxin SBDS PF01172.18 gi|385803889|ref|YP_005840289.1| - 2.5e-19 69.1 0.0 3.8e-19 68.5 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|385803889|ref|YP_005840289.1| - 7.6e-18 64.6 0.0 1.3e-17 63.8 0.0 1.4 1 0 0 1 1 1 1 SBDS protein C-terminal domain DUF3760 PF12586.8 gi|385803889|ref|YP_005840289.1| - 0.059 13.5 0.2 0.11 12.7 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3760) RCDG1 PF15725.5 gi|385803889|ref|YP_005840289.1| - 0.12 12.8 0.2 0.31 11.5 0.1 1.7 1 1 0 1 1 1 0 Renal cancer differentiation gene 1 protein Shisa PF13908.6 gi|385803891|ref|YP_005840291.1| - 0.035 14.4 3.7 0.041 14.1 3.7 1.1 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator Trypan_PARP PF05887.11 gi|385803891|ref|YP_005840291.1| - 0.5 10.3 12.8 0.64 10.0 12.8 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) MGC-24 PF05283.11 gi|385803891|ref|YP_005840291.1| - 6.9 7.1 12.9 10 6.6 12.9 1.3 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin DUF4013 PF13197.6 gi|385803892|ref|YP_005840292.1| - 0.58 10.0 49.2 0.012 15.4 21.3 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF4013) MFS_1 PF07690.16 gi|385803893|ref|YP_005840293.1| - 8.7e-50 169.6 55.8 1.1e-25 90.3 26.8 2.1 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|385803893|ref|YP_005840293.1| - 2.1e-10 40.1 26.4 7.6e-08 31.6 5.9 2.4 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|385803893|ref|YP_005840293.1| - 7.1e-08 31.3 15.9 0.00019 20.0 9.0 2.4 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_1_like PF12832.7 gi|385803893|ref|YP_005840293.1| - 2.2e-07 30.1 19.4 4.2e-07 29.1 18.3 2.0 1 1 0 1 1 1 1 MFS_1 like family MFS_4 PF06779.14 gi|385803893|ref|YP_005840293.1| - 0.69 9.1 30.5 3.2 7.0 29.4 2.4 1 1 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB Acetyltransf_1 PF00583.25 gi|385803894|ref|YP_005840294.1| - 1.9e-12 47.4 0.0 1.3e-11 44.8 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|385803894|ref|YP_005840294.1| - 1.9e-08 34.1 0.2 8.3e-08 32.1 0.0 2.0 2 1 0 2 2 2 1 FR47-like protein Acetyltransf_7 PF13508.7 gi|385803894|ref|YP_005840294.1| - 5.3e-08 33.2 0.0 3.4e-07 30.6 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|385803894|ref|YP_005840294.1| - 9.2e-07 28.9 0.0 1.6e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|385803894|ref|YP_005840294.1| - 1.4e-05 25.8 0.0 2e-05 25.3 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|385803894|ref|YP_005840294.1| - 0.00035 20.7 0.0 0.00083 19.5 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|385803894|ref|YP_005840294.1| - 0.0011 18.9 0.1 0.0026 17.7 0.1 1.6 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase Acetyltransf_CG PF14542.6 gi|385803894|ref|YP_005840294.1| - 0.0025 17.9 0.0 0.0053 16.9 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.6 gi|385803894|ref|YP_005840294.1| - 0.0099 15.6 0.3 0.021 14.5 0.2 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|385803894|ref|YP_005840294.1| - 0.027 14.6 0.0 0.042 13.9 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain CDP-OH_P_transf PF01066.21 gi|385803895|ref|YP_005840295.1| - 5.2e-10 40.0 0.1 5.2e-10 40.0 0.1 2.8 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase PsbH PF00737.20 gi|385803895|ref|YP_005840295.1| - 0.14 11.9 0.0 0.14 11.9 0.0 2.6 3 0 0 3 3 3 0 Photosystem II 10 kDa phosphoprotein SNARE_assoc PF09335.11 gi|385803896|ref|YP_005840296.1| - 2.7e-25 89.2 3.2 7e-25 87.8 3.2 1.7 1 0 0 1 1 1 1 SNARE associated Golgi protein Alpha_E2_glycop PF00943.19 gi|385803898|ref|YP_005840298.1| - 0.045 12.5 0.1 0.063 12.0 0.1 1.1 1 0 0 1 1 1 0 Alphavirus E2 glycoprotein TBP PF00352.21 gi|385803899|ref|YP_005840299.1| - 5.7e-57 189.6 0.0 2.4e-27 94.7 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|385803899|ref|YP_005840299.1| - 1.8e-06 28.0 0.0 0.0037 17.4 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) T4bSS_IcmS PF12608.8 gi|385803899|ref|YP_005840299.1| - 0.037 14.3 0.0 2.5 8.4 0.0 2.3 1 1 1 2 2 2 0 Type IVb secretion, IcmS, effector-recruitment ATP-gua_Ptrans PF00217.19 gi|385803899|ref|YP_005840299.1| - 0.11 12.0 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 ATP:guanido phosphotransferase, C-terminal catalytic domain ERCC3_RAD25_C PF16203.5 gi|385803900|ref|YP_005840300.1| - 3.3e-24 85.4 0.0 5.9e-24 84.6 0.0 1.4 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase ResIII PF04851.15 gi|385803900|ref|YP_005840300.1| - 4.6e-19 69.1 0.0 8.9e-19 68.1 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|385803900|ref|YP_005840300.1| - 6.1e-12 45.9 0.0 6.2e-11 42.6 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|385803900|ref|YP_005840300.1| - 1.8e-11 43.4 0.0 2.5e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain DEAD PF00270.29 gi|385803900|ref|YP_005840300.1| - 1e-06 28.7 0.0 2.1e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase HTH_11 PF08279.12 gi|385803900|ref|YP_005840300.1| - 0.0029 17.5 0.0 0.0081 16.1 0.0 1.7 1 0 0 1 1 1 1 HTH domain AAA_5 PF07728.14 gi|385803900|ref|YP_005840300.1| - 0.0031 17.5 0.1 0.084 12.9 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) TrmB PF01978.19 gi|385803900|ref|YP_005840300.1| - 0.0037 17.1 0.1 0.013 15.4 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB AAA_30 PF13604.6 gi|385803900|ref|YP_005840300.1| - 0.0088 15.8 0.1 0.054 13.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain MarR PF01047.22 gi|385803900|ref|YP_005840300.1| - 0.016 15.2 0.1 0.073 13.0 0.0 2.2 2 0 0 2 2 2 0 MarR family AAA_22 PF13401.6 gi|385803900|ref|YP_005840300.1| - 0.02 15.2 2.6 0.22 11.8 0.8 3.3 3 1 0 3 3 3 0 AAA domain TsaE PF02367.17 gi|385803900|ref|YP_005840300.1| - 0.1 12.6 0.0 1.1 9.3 0.0 2.3 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE HTH_5 PF01022.20 gi|385803900|ref|YP_005840300.1| - 0.11 12.4 0.0 0.26 11.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family AAA PF00004.29 gi|385803900|ref|YP_005840300.1| - 0.16 12.4 0.0 0.42 11.1 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Stk19 PF10494.9 gi|385803900|ref|YP_005840300.1| - 0.18 11.5 0.1 0.35 10.5 0.1 1.4 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 HPP PF04982.13 gi|385803901|ref|YP_005840301.1| - 2.4e-16 60.0 6.0 3.1e-16 59.7 6.0 1.1 1 0 0 1 1 1 1 HPP family RIG-I_C-RD PF11648.8 gi|385803902|ref|YP_005840302.1| - 0.034 14.4 0.1 0.066 13.5 0.1 1.7 1 1 0 1 1 1 0 C-terminal domain of RIG-I LysE PF01810.18 gi|385803903|ref|YP_005840303.1| - 8.3e-24 84.1 13.0 1e-23 83.8 13.0 1.1 1 0 0 1 1 1 1 LysE type translocator Arylsulfotran_2 PF14269.6 gi|385803905|ref|YP_005840305.1| - 9e-14 51.5 0.2 1.7e-12 47.4 0.2 2.3 1 1 0 1 1 1 1 Arylsulfotransferase (ASST) Arylsulfotrans PF05935.11 gi|385803905|ref|YP_005840305.1| - 3.4e-08 32.8 0.5 2.7e-07 29.8 0.3 2.5 2 1 0 2 2 2 1 Arylsulfotransferase (ASST) NHL PF01436.21 gi|385803905|ref|YP_005840305.1| - 0.015 15.3 0.5 11 6.3 0.1 3.2 3 0 0 3 3 3 0 NHL repeat PD40 PF07676.12 gi|385803905|ref|YP_005840305.1| - 0.093 12.7 0.0 0.23 11.4 0.0 1.7 1 0 0 1 1 1 0 WD40-like Beta Propeller Repeat Fer2 PF00111.27 gi|385803906|ref|YP_005840306.1| - 3.3e-06 27.0 0.1 1.7e-05 24.7 0.1 2.2 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Polyketide_cyc PF03364.20 gi|385803907|ref|YP_005840307.1| - 5.2e-07 29.9 0.0 9.5e-07 29.1 0.0 1.4 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.9 gi|385803907|ref|YP_005840307.1| - 3.6e-05 24.1 0.1 4.6e-05 23.7 0.1 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Glucodextran_N PF09137.11 gi|385803908|ref|YP_005840308.1| - 3.7e-76 256.2 5.2 6.3e-76 255.4 5.2 1.4 1 0 0 1 1 1 1 Glucodextranase, domain N Glyco_hydro_15 PF00723.21 gi|385803908|ref|YP_005840308.1| - 1.1e-28 100.3 1.2 5.5e-21 74.9 0.0 4.2 3 1 1 4 4 4 3 Glycosyl hydrolases family 15 Alpha-amylase PF00128.24 gi|385803909|ref|YP_005840309.1| - 1e-44 153.5 0.1 2.4e-42 145.7 0.1 2.3 1 1 0 1 1 1 1 Alpha amylase, catalytic domain Malt_amylase_C PF16657.5 gi|385803909|ref|YP_005840309.1| - 0.00023 21.2 0.1 0.00053 20.0 0.1 1.6 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain DUF3459 PF11941.8 gi|385803909|ref|YP_005840309.1| - 0.0006 20.1 0.0 0.0032 17.8 0.0 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF3459) Glyco_hydro_42C PF08533.10 gi|385803909|ref|YP_005840309.1| - 0.0051 16.5 0.3 0.33 10.7 0.0 3.1 3 0 0 3 3 3 1 Beta-galactosidase C-terminal domain hDGE_amylase PF14701.6 gi|385803909|ref|YP_005840309.1| - 0.006 15.7 0.0 0.01 15.0 0.0 1.3 1 0 0 1 1 1 1 Glycogen debranching enzyme, glucanotransferase domain Alpha-amylase_C PF02806.18 gi|385803909|ref|YP_005840309.1| - 0.046 14.2 0.0 0.13 12.7 0.0 1.8 1 0 0 1 1 1 0 Alpha amylase, C-terminal all-beta domain Zn_Tnp_IS1595 PF12760.7 gi|385803910|ref|YP_005840310.1| - 0.0094 15.9 3.8 0.1 12.6 4.6 2.0 1 1 1 2 2 2 1 Transposase zinc-ribbon domain Trm112p PF03966.16 gi|385803910|ref|YP_005840310.1| - 0.016 15.8 0.1 0.45 11.1 0.0 2.1 2 0 0 2 2 2 0 Trm112p-like protein TF_Zn_Ribbon PF08271.12 gi|385803910|ref|YP_005840310.1| - 0.04 13.4 1.2 0.46 10.0 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|385803910|ref|YP_005840310.1| - 0.042 13.8 0.8 0.073 13.0 0.4 1.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain PhnA_Zn_Ribbon PF08274.12 gi|385803910|ref|YP_005840310.1| - 0.054 13.5 1.1 0.9 9.6 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_9 PF14369.6 gi|385803910|ref|YP_005840310.1| - 0.064 13.5 3.2 1.8 8.9 0.1 2.3 1 1 1 2 2 2 0 zinc-ribbon zf-nanos PF05741.13 gi|385803910|ref|YP_005840310.1| - 0.071 13.4 1.9 8.7 6.7 0.2 2.1 1 1 1 2 2 2 0 Nanos RNA binding domain TFIIS_C PF01096.18 gi|385803910|ref|YP_005840310.1| - 0.071 13.0 0.7 2.5 8.0 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.10 gi|385803910|ref|YP_005840310.1| - 0.08 13.1 2.1 0.2 11.8 2.1 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|385803910|ref|YP_005840310.1| - 0.084 12.3 2.5 1.2 8.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|385803910|ref|YP_005840310.1| - 0.099 12.4 0.3 3.3 7.5 0.1 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein CpXC PF14353.6 gi|385803910|ref|YP_005840310.1| - 0.19 11.8 2.6 8.2 6.5 0.1 2.2 1 1 0 2 2 2 0 CpXC protein zf_UBZ PF18439.1 gi|385803910|ref|YP_005840310.1| - 0.36 10.5 0.2 0.36 10.5 0.2 2.6 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 gi|385803910|ref|YP_005840310.1| - 0.4 10.6 4.0 13 5.8 0.1 2.8 3 0 0 3 3 3 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|385803910|ref|YP_005840310.1| - 3.4 7.1 6.0 7.4 6.0 4.3 2.2 2 1 1 3 3 3 0 Transcription factor zinc-finger PMT_2 PF13231.6 gi|385803911|ref|YP_005840311.1| - 1.4e-09 38.3 15.8 1.4e-09 38.3 15.8 2.4 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_transf_22 PF03901.17 gi|385803911|ref|YP_005840311.1| - 0.0085 15.4 4.4 0.015 14.5 4.4 1.4 1 0 0 1 1 1 1 Alg9-like mannosyltransferase family Trp_oprn_chp PF09534.10 gi|385803911|ref|YP_005840311.1| - 0.07 12.9 0.0 0.07 12.9 0.0 4.0 4 0 0 4 4 4 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) ABC_tran PF00005.27 gi|385803912|ref|YP_005840312.1| - 1.8e-34 119.2 0.0 3.7e-34 118.2 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385803912|ref|YP_005840312.1| - 3.3e-06 27.1 1.7 0.012 15.5 0.2 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|385803912|ref|YP_005840312.1| - 4.5e-05 23.4 0.0 0.00017 21.6 0.0 1.9 1 1 0 1 1 1 1 Rad17 P-loop domain TOBE_2 PF08402.10 gi|385803912|ref|YP_005840312.1| - 0.00025 21.1 0.1 0.0054 16.9 0.1 2.9 1 1 0 1 1 1 1 TOBE domain AAA_16 PF13191.6 gi|385803912|ref|YP_005840312.1| - 0.00029 21.3 0.1 0.00056 20.3 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|385803912|ref|YP_005840312.1| - 0.00032 21.1 0.0 0.002 18.5 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|385803912|ref|YP_005840312.1| - 0.01 16.1 0.5 0.032 14.5 0.5 1.8 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|385803912|ref|YP_005840312.1| - 0.02 15.1 0.0 0.046 13.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|385803912|ref|YP_005840312.1| - 0.031 14.2 0.1 0.065 13.1 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 gi|385803912|ref|YP_005840312.1| - 0.048 13.4 0.1 0.11 12.2 0.1 1.5 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|385803912|ref|YP_005840312.1| - 0.096 12.9 0.4 0.61 10.4 0.4 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.22 gi|385803912|ref|YP_005840312.1| - 0.14 11.3 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain BPD_transp_1 PF00528.22 gi|385803913|ref|YP_005840313.1| - 4.2e-26 91.8 28.3 2.3e-15 56.8 7.7 4.0 3 1 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component SBP_bac_6 PF13343.6 gi|385803914|ref|YP_005840314.1| - 1.9e-12 47.2 0.0 2.6e-12 46.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|385803914|ref|YP_005840314.1| - 1.9e-09 37.6 0.2 2.7e-09 37.1 0.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|385803914|ref|YP_005840314.1| - 3.3e-08 33.7 0.0 4.8e-08 33.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein UCR_Fe-S_N PF10399.9 gi|385803914|ref|YP_005840314.1| - 0.91 8.9 5.9 0.35 10.2 2.7 2.0 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal RGP PF03214.13 gi|385803915|ref|YP_005840315.1| - 8.3e-17 61.4 0.0 9.4e-17 61.2 0.0 1.2 1 0 0 1 1 1 1 Reversibly glycosylated polypeptide DUF393 PF04134.12 gi|385803916|ref|YP_005840316.1| - 4.4e-07 31.2 0.2 6.5e-07 30.7 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF393 DUF123 PF01986.16 gi|385803917|ref|YP_005840317.1| - 3.3e-28 98.0 0.0 4.4e-28 97.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 zf-C4_ClpX PF06689.13 gi|385803917|ref|YP_005840317.1| - 0.048 13.6 0.0 0.088 12.7 0.0 1.4 1 0 0 1 1 1 0 ClpX C4-type zinc finger FAD-oxidase_C PF02913.19 gi|385803918|ref|YP_005840318.1| - 1.9e-66 224.2 0.1 3.3e-66 223.5 0.1 1.4 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|385803918|ref|YP_005840318.1| - 1.6e-39 134.8 0.4 3.7e-39 133.6 0.4 1.7 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.6 gi|385803918|ref|YP_005840318.1| - 5e-10 39.8 3.7 1e-09 38.8 3.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|385803918|ref|YP_005840318.1| - 1.5e-09 38.2 4.4 3.2e-09 37.1 4.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|385803918|ref|YP_005840318.1| - 4.6e-08 33.2 0.0 1.6e-06 28.2 0.0 2.6 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_10 PF13237.6 gi|385803918|ref|YP_005840318.1| - 6.8e-05 22.9 4.1 0.0028 17.8 0.3 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|385803918|ref|YP_005840318.1| - 0.0014 18.8 3.1 0.022 14.9 0.4 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|385803918|ref|YP_005840318.1| - 0.0025 18.3 4.5 0.12 13.0 5.2 2.5 1 1 1 2 2 2 1 4Fe-4S dicluster domain Cytokin-bind PF09265.10 gi|385803918|ref|YP_005840318.1| - 0.0032 16.9 0.0 0.0054 16.2 0.0 1.3 1 0 0 1 1 1 1 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_16 PF13484.6 gi|385803918|ref|YP_005840318.1| - 0.031 15.2 1.1 0.46 11.5 0.1 2.6 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|385803918|ref|YP_005840318.1| - 0.043 13.9 2.3 0.14 12.3 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|385803918|ref|YP_005840318.1| - 0.17 12.1 0.3 0.48 10.6 0.2 1.7 2 0 0 2 2 1 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|385803918|ref|YP_005840318.1| - 0.21 11.5 14.6 0.056 13.3 4.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|385803918|ref|YP_005840318.1| - 1.1 9.4 11.1 0.2 11.8 2.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|385803918|ref|YP_005840318.1| - 6.3 7.6 11.1 0.67 10.6 2.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain DDE_Tnp_1 PF01609.21 gi|385803921|ref|YP_005840321.1| - 2.3e-14 53.5 0.0 4.3e-14 52.7 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.6 gi|385803921|ref|YP_005840321.1| - 0.00016 20.1 0.0 0.00021 19.7 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain group 1 NPFF PF15085.6 gi|385803921|ref|YP_005840321.1| - 0.14 12.5 0.0 0.32 11.4 0.0 1.5 1 0 0 1 1 1 0 Neuropeptide FF DDE_5 PF13546.6 gi|385803922|ref|YP_005840322.1| - 3.2e-26 92.3 0.0 4.7e-26 91.7 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|385803922|ref|YP_005840322.1| - 8.1e-16 58.3 0.1 2.1e-15 56.9 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|385803922|ref|YP_005840322.1| - 0.00013 21.3 0.5 0.00055 19.3 0.5 1.8 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|385803922|ref|YP_005840322.1| - 0.016 13.5 0.0 0.022 13.0 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 DDE_Tnp_1_6 PF13751.6 gi|385803922|ref|YP_005840322.1| - 0.14 12.4 0.0 0.31 11.3 0.0 1.6 1 0 0 1 1 1 0 Transposase DDE domain DUF3267 PF11667.8 gi|385803924|ref|YP_005840324.1| - 9.8e-07 29.0 1.9 9.8e-07 29.0 1.9 1.6 2 0 0 2 2 2 1 Putative zincin peptidase Peptidase_M50B PF13398.6 gi|385803924|ref|YP_005840324.1| - 0.091 12.4 8.8 1.6 8.3 8.3 2.2 1 1 0 1 1 1 0 Peptidase M50B-like Ibs_toxin PF13956.6 gi|385803924|ref|YP_005840324.1| - 0.63 10.1 3.7 1.8 8.6 3.7 1.8 1 0 0 1 1 1 0 Toxin Ibs, type I toxin-antitoxin system Gly-zipper_Omp PF13488.6 gi|385803926|ref|YP_005840326.1| - 0.0062 16.5 13.4 0.0099 15.9 13.4 1.2 1 0 0 1 1 1 1 Glycine zipper SDA1 PF05285.12 gi|385803926|ref|YP_005840326.1| - 0.016 14.7 10.5 0.017 14.5 10.5 1.1 1 0 0 1 1 1 0 SDA1 Hid1 PF12722.7 gi|385803926|ref|YP_005840326.1| - 0.13 10.4 2.0 0.12 10.4 2.0 1.0 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein SAPS PF04499.15 gi|385803926|ref|YP_005840326.1| - 0.28 9.9 4.5 0.28 9.9 4.5 1.1 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein Gly-zipper_YMGG PF13441.6 gi|385803926|ref|YP_005840326.1| - 0.51 10.1 14.1 0.76 9.6 14.1 1.2 1 0 0 1 1 1 0 YMGG-like Gly-zipper Rick_17kDa_Anti PF05433.15 gi|385803926|ref|YP_005840326.1| - 0.72 9.8 15.4 1 9.3 15.4 1.2 1 0 0 1 1 1 0 Glycine zipper 2TM domain DUF3169 PF11368.8 gi|385803926|ref|YP_005840326.1| - 2.1 7.8 2.7 0.94 8.9 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3169) DDE_Tnp_IS1595 PF12762.7 gi|385803927|ref|YP_005840327.1| - 4.4e-22 78.7 0.0 6.5e-22 78.2 0.0 1.3 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 gi|385803927|ref|YP_005840327.1| - 2.3e-10 40.3 4.5 4.4e-10 39.4 4.5 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.13 gi|385803927|ref|YP_005840327.1| - 7.4e-06 25.6 6.0 1.5e-05 24.7 6.0 1.5 1 0 0 1 1 1 1 InsA N-terminal domain DUF2089 PF09862.9 gi|385803927|ref|YP_005840327.1| - 0.0037 17.3 0.1 0.0072 16.3 0.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF2089) zf-Dof PF02701.15 gi|385803927|ref|YP_005840327.1| - 0.083 13.0 3.4 0.16 12.1 3.4 1.5 1 0 0 1 1 1 0 Dof domain, zinc finger CoiA PF06054.11 gi|385803927|ref|YP_005840327.1| - 0.12 11.5 0.1 0.2 10.8 0.1 1.3 1 0 0 1 1 1 0 Competence protein CoiA-like family Auxin_inducible PF02519.14 gi|385803927|ref|YP_005840327.1| - 0.14 12.3 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 Auxin responsive protein zf-ISL3 PF14690.6 gi|385803927|ref|YP_005840327.1| - 0.18 12.5 7.8 0.36 11.5 0.8 2.7 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Lar_restr_allev PF14354.6 gi|385803927|ref|YP_005840327.1| - 0.2 12.0 1.6 0.44 11.0 1.6 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar DpnI PF06044.12 gi|385803927|ref|YP_005840327.1| - 0.22 11.1 0.3 0.33 10.6 0.3 1.2 1 0 0 1 1 1 0 Dam-replacing family zinc-ribbons_6 PF07191.12 gi|385803927|ref|YP_005840327.1| - 0.22 11.5 2.8 0.42 10.6 2.8 1.4 1 0 0 1 1 1 0 zinc-ribbons PALP PF00291.25 gi|385803928|ref|YP_005840328.1| - 1.3e-58 198.7 0.4 1.9e-58 198.2 0.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 gi|385803928|ref|YP_005840328.1| - 0.00023 21.1 0.1 0.0006 19.8 0.1 1.6 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Thioredoxin PF00085.20 gi|385803929|ref|YP_005840329.1| - 3.6e-05 23.7 0.0 5e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin AhpC-TSA PF00578.21 gi|385803929|ref|YP_005840329.1| - 0.00015 21.7 0.0 0.00039 20.3 0.0 1.8 1 1 0 1 1 1 1 AhpC/TSA family Thioredoxin_9 PF14595.6 gi|385803929|ref|YP_005840329.1| - 0.0053 16.5 0.1 0.013 15.2 0.1 1.7 1 1 0 1 1 1 1 Thioredoxin Redoxin PF08534.10 gi|385803929|ref|YP_005840329.1| - 0.059 13.1 0.0 0.2 11.4 0.0 1.9 1 1 0 1 1 1 0 Redoxin Thioredoxin_3 PF13192.6 gi|385803929|ref|YP_005840329.1| - 0.065 13.3 0.0 0.11 12.5 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin domain DUF1923 PF09083.10 gi|385803929|ref|YP_005840329.1| - 0.11 12.2 0.5 12 5.6 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1923) Thioredoxin_8 PF13905.6 gi|385803929|ref|YP_005840329.1| - 0.15 12.4 0.0 6.2 7.2 0.0 2.3 1 1 1 2 2 2 0 Thioredoxin-like Thioredox_DsbH PF03190.15 gi|385803931|ref|YP_005840331.1| - 1.2e-72 243.2 0.0 2e-72 242.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|385803931|ref|YP_005840331.1| - 2.8e-08 33.8 0.0 6.8e-08 32.6 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.11 gi|385803931|ref|YP_005840331.1| - 0.00038 19.8 0.2 0.0081 15.4 0.1 2.2 2 0 0 2 2 2 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_88 PF07470.13 gi|385803931|ref|YP_005840331.1| - 0.0059 15.7 0.1 0.069 12.2 0.0 2.3 2 0 0 2 2 2 1 Glycosyl Hydrolase Family 88 C5-epim_C PF06662.13 gi|385803931|ref|YP_005840331.1| - 0.0074 15.8 0.2 0.4 10.2 0.0 2.9 2 1 1 3 3 3 1 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_76 PF03663.14 gi|385803931|ref|YP_005840331.1| - 0.019 14.5 0.2 0.69 9.4 0.0 2.4 2 0 0 2 2 2 0 Glycosyl hydrolase family 76 GARS_A PF01071.19 gi|385803932|ref|YP_005840332.1| - 2.2e-52 177.7 0.0 3e-52 177.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|385803932|ref|YP_005840332.1| - 2.2e-21 76.4 0.0 5.1e-21 75.2 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|385803932|ref|YP_005840332.1| - 4.3e-14 52.5 0.4 4.3e-14 52.5 0.4 2.4 4 0 0 4 4 4 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|385803932|ref|YP_005840332.1| - 2.3e-06 27.8 0.0 7.1e-06 26.2 0.0 1.8 2 1 0 2 2 2 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|385803932|ref|YP_005840332.1| - 0.0069 15.7 0.0 0.027 13.7 0.0 1.8 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp ATP-grasp_4 PF13535.6 gi|385803932|ref|YP_005840332.1| - 0.021 14.4 0.2 0.054 13.1 0.2 1.8 1 1 0 1 1 1 0 ATP-grasp domain Hexapep_2 PF14602.6 gi|385803933|ref|YP_005840333.1| - 1.2e-07 31.3 1.0 7.9e-05 22.3 0.0 2.6 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase Hexapep PF00132.24 gi|385803933|ref|YP_005840333.1| - 6.7e-07 28.8 2.1 0.00023 20.8 0.1 3.2 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) MS_channel PF00924.18 gi|385803934|ref|YP_005840334.1| - 3.7e-15 56.0 2.4 3.7e-15 56.0 2.4 2.1 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|385803934|ref|YP_005840334.1| - 0.00047 20.1 0.1 0.00047 20.1 0.1 3.8 4 0 0 4 4 4 2 Conserved TM helix DisA_N PF02457.16 gi|385803935|ref|YP_005840335.1| - 5.2e-21 74.4 0.0 8.3e-21 73.8 0.0 1.3 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding PK_C PF02887.16 gi|385803935|ref|YP_005840335.1| - 0.014 15.6 0.0 0.09 13.0 0.0 2.1 2 0 0 2 2 2 0 Pyruvate kinase, alpha/beta domain TFIIB PF00382.19 gi|385803936|ref|YP_005840336.1| - 2e-05 24.5 0.2 3.1e-05 23.9 0.2 1.4 1 1 0 1 1 1 1 Transcription factor TFIIB repeat CTP_transf_like PF01467.26 gi|385803937|ref|YP_005840337.1| - 1.3e-11 44.9 0.0 1.8e-11 44.4 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|385803937|ref|YP_005840337.1| - 0.00013 21.9 0.1 0.01 15.7 0.1 2.2 2 1 0 2 2 2 2 FAD synthetase GCS2 PF04107.13 gi|385803938|ref|YP_005840338.1| - 3.6e-72 243.2 0.4 4.1e-72 243.0 0.4 1.0 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Amidoligase_2 PF12224.8 gi|385803938|ref|YP_005840338.1| - 0.027 14.2 0.1 4.5 6.9 0.0 2.7 3 0 0 3 3 3 0 Putative amidoligase enzyme Fibrillarin PF01269.17 gi|385803939|ref|YP_005840339.1| - 2.3e-51 174.1 0.0 2.7e-51 173.9 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin Nop PF01798.18 gi|385803940|ref|YP_005840340.1| - 4.7e-40 137.5 0.1 8.7e-40 136.6 0.1 1.6 1 1 0 1 1 1 1 snoRNA binding domain, fibrillarin DUF3972 PF13118.6 gi|385803940|ref|YP_005840340.1| - 0.0015 19.0 0.0 0.0033 17.9 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3972) TFIIB PF00382.19 gi|385803942|ref|YP_005840342.1| - 2.1e-40 136.6 0.4 7.5e-19 67.6 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|385803942|ref|YP_005840342.1| - 6.5e-18 64.0 1.5 1.4e-17 62.9 1.5 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|385803942|ref|YP_005840342.1| - 0.0057 16.1 2.1 0.035 13.6 0.0 2.9 3 0 0 3 3 3 1 Sigma-70, region 4 IBR PF01485.21 gi|385803942|ref|YP_005840342.1| - 0.029 14.6 0.5 0.052 13.8 0.5 1.4 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain HTH_11 PF08279.12 gi|385803942|ref|YP_005840342.1| - 0.056 13.4 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 HTH domain Cyclin_C PF02984.19 gi|385803942|ref|YP_005840342.1| - 0.071 13.2 0.0 1.1 9.3 0.0 2.2 2 0 0 2 2 2 0 Cyclin, C-terminal domain DZR PF12773.7 gi|385803942|ref|YP_005840342.1| - 0.094 12.8 0.5 0.16 12.0 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon TrmB PF01978.19 gi|385803942|ref|YP_005840342.1| - 0.17 11.8 1.6 0.28 11.1 0.3 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB OrfB_Zn_ribbon PF07282.11 gi|385803942|ref|YP_005840342.1| - 0.33 10.9 1.7 0.66 9.9 1.7 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain UPF0058 PF01893.16 gi|385803944|ref|YP_005840344.1| - 1.5e-18 66.8 0.0 1.7e-18 66.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 DUF555 PF04475.12 gi|385803945|ref|YP_005840345.1| - 5.9e-37 126.0 0.2 7.6e-37 125.7 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) HhH-GPD PF00730.25 gi|385803946|ref|YP_005840346.1| - 5.1e-11 43.0 0.0 8.4e-11 42.3 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein OGG_N PF07934.12 gi|385803946|ref|YP_005840346.1| - 5.2e-10 39.5 0.0 1.5e-09 38.0 0.0 1.7 1 1 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain Glyco_hydro_77 PF02446.17 gi|385803947|ref|YP_005840347.1| - 1.9e-134 449.1 0.4 2.7e-133 445.3 0.4 1.9 1 1 0 1 1 1 1 4-alpha-glucanotransferase tRNA-synt_2b PF00587.25 gi|385803948|ref|YP_005840348.1| - 8.9e-33 113.7 0.0 1.6e-32 112.9 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|385803948|ref|YP_005840348.1| - 2.3e-19 69.3 0.4 7.3e-19 67.7 0.2 2.0 2 0 0 2 2 2 1 Anticodon binding domain TGS PF02824.21 gi|385803948|ref|YP_005840348.1| - 1.3e-12 47.5 0.2 3.2e-12 46.3 0.2 1.7 1 0 0 1 1 1 1 TGS domain tRNA_SAD PF07973.14 gi|385803948|ref|YP_005840348.1| - 1.7e-11 44.0 0.0 3.2e-11 43.1 0.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain OrfB_IS605 PF01385.19 gi|385803949|ref|YP_005840349.1| - 4.4e-24 85.0 0.3 1.2e-23 83.6 0.0 1.9 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|385803949|ref|YP_005840349.1| - 5.5e-18 64.6 2.4 5.5e-18 64.6 2.4 2.4 2 0 0 2 2 2 1 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|385803949|ref|YP_005840349.1| - 0.00038 20.7 1.1 0.001 19.3 1.1 1.7 1 0 0 1 1 1 1 C1 domain zf-RRN7 PF11781.8 gi|385803949|ref|YP_005840349.1| - 0.047 13.4 1.1 0.14 11.8 0.2 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 NAD_synthase PF02540.17 gi|385803950|ref|YP_005840350.1| - 1.2e-64 217.7 0.0 1.8e-64 217.2 0.0 1.2 1 0 0 1 1 1 1 NAD synthase CN_hydrolase PF00795.22 gi|385803950|ref|YP_005840350.1| - 5.4e-21 75.1 0.0 1.6e-20 73.6 0.0 1.7 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase tRNA_Me_trans PF03054.16 gi|385803950|ref|YP_005840350.1| - 1.3e-07 30.8 0.0 8.9e-06 24.7 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.21 gi|385803950|ref|YP_005840350.1| - 0.00012 21.9 0.1 0.00021 21.1 0.1 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|385803950|ref|YP_005840350.1| - 0.0035 16.9 0.0 0.013 15.0 0.0 1.8 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC TrkA_N PF02254.18 gi|385803951|ref|YP_005840351.1| - 3.6e-21 75.6 2.7 3.6e-21 75.6 2.7 2.3 2 0 0 2 2 2 1 TrkA-N domain DHH PF01368.20 gi|385803951|ref|YP_005840351.1| - 1.1e-10 41.7 2.1 1.2e-09 38.3 0.5 2.4 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.19 gi|385803951|ref|YP_005840351.1| - 2.7e-09 37.5 2.8 3.6e-08 33.9 0.0 2.7 2 1 0 2 2 2 1 DHHA1 domain F420_oxidored PF03807.17 gi|385803951|ref|YP_005840351.1| - 5.5e-07 30.1 2.6 6.6e-07 29.8 0.5 2.2 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|385803951|ref|YP_005840351.1| - 1.9e-06 28.1 0.3 5.3e-06 26.7 0.3 1.8 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|385803951|ref|YP_005840351.1| - 3.5e-06 26.7 0.0 8.7e-06 25.4 0.0 1.8 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|385803951|ref|YP_005840351.1| - 9.8e-05 22.0 0.1 0.00021 20.9 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.6 gi|385803951|ref|YP_005840351.1| - 0.00016 22.1 0.8 0.00048 20.5 0.8 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding Epimerase PF01370.21 gi|385803951|ref|YP_005840351.1| - 0.00023 20.7 1.2 0.0018 17.8 0.1 2.3 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family IlvN PF07991.12 gi|385803951|ref|YP_005840351.1| - 0.00025 20.7 0.5 0.00047 19.8 0.5 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|385803951|ref|YP_005840351.1| - 0.00032 20.9 0.0 0.00065 19.9 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|385803951|ref|YP_005840351.1| - 0.0065 16.4 1.9 0.0069 16.3 0.3 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain adh_short PF00106.25 gi|385803951|ref|YP_005840351.1| - 0.011 15.2 0.6 0.032 13.7 0.5 1.8 1 1 1 2 2 2 0 short chain dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|385803951|ref|YP_005840351.1| - 0.012 15.6 0.0 0.027 14.4 0.0 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus adh_short_C2 PF13561.6 gi|385803951|ref|YP_005840351.1| - 0.02 14.4 2.6 0.036 13.6 1.6 2.0 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase 2-Hacid_dh_C PF02826.19 gi|385803951|ref|YP_005840351.1| - 0.023 14.1 0.1 0.24 10.8 0.0 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|385803951|ref|YP_005840351.1| - 0.027 13.8 0.8 0.027 13.8 0.8 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 gi|385803951|ref|YP_005840351.1| - 0.098 12.9 0.0 0.24 11.7 0.0 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain DUF3335 PF11814.8 gi|385803951|ref|YP_005840351.1| - 0.098 12.1 0.1 0.2 11.1 0.1 1.5 1 0 0 1 1 1 0 Peptidase_C39 like family KR PF08659.10 gi|385803951|ref|YP_005840351.1| - 0.15 12.0 0.8 0.37 10.7 0.2 2.0 2 0 0 2 2 2 0 KR domain UDPG_MGDP_dh_C PF03720.15 gi|385803951|ref|YP_005840351.1| - 0.22 11.9 5.6 2.6 8.5 1.1 2.7 1 1 2 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XdhC_C PF13478.6 gi|385803951|ref|YP_005840351.1| - 0.27 11.7 2.0 0.42 11.1 0.7 1.9 1 1 1 2 2 2 0 XdhC Rossmann domain PRC PF05239.16 gi|385803952|ref|YP_005840352.1| - 3.1e-09 36.8 1.8 4.6e-09 36.2 1.8 1.3 1 0 0 1 1 1 1 PRC-barrel domain RcnB PF11776.8 gi|385803952|ref|YP_005840352.1| - 0.039 14.0 0.5 0.078 13.0 0.5 1.5 1 1 0 1 1 1 0 Nickel/cobalt transporter regulator HHV-5_US34A PF17087.5 gi|385803952|ref|YP_005840352.1| - 0.18 12.0 0.0 0.28 11.4 0.0 1.3 1 0 0 1 1 1 0 Herpesvirus US34A protein family zf-ACC PF17848.1 gi|385803954|ref|YP_005840354.1| - 0.013 15.6 0.0 0.027 14.5 0.0 1.6 1 0 0 1 1 1 0 Acetyl-coA carboxylase zinc finger domain Tachylectin PF14517.6 gi|385803954|ref|YP_005840354.1| - 0.16 11.5 0.0 0.16 11.5 0.0 1.0 1 0 0 1 1 1 0 Tachylectin AdoMet_Synthase PF01941.19 gi|385803955|ref|YP_005840355.1| - 1.7e-173 577.0 6.6 1.9e-173 576.8 6.6 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.20 gi|385803955|ref|YP_005840355.1| - 0.046 14.4 0.0 0.22 12.2 0.0 2.2 1 0 0 1 1 1 0 S-adenosylmethionine synthetase, N-terminal domain CYTH PF01928.21 gi|385803956|ref|YP_005840356.1| - 3e-36 125.0 3.2 3.4e-36 124.8 3.2 1.0 1 0 0 1 1 1 1 CYTH domain S8_pro-domain PF16470.5 gi|385803956|ref|YP_005840356.1| - 0.096 13.5 0.1 2.3 9.0 0.0 2.3 2 0 0 2 2 2 0 Peptidase S8 pro-domain FKBP_C PF00254.28 gi|385803957|ref|YP_005840357.1| - 1.8e-06 28.2 0.0 4.2e-06 27.0 0.0 1.7 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase CbiA PF01656.23 gi|385803958|ref|YP_005840358.1| - 2.8e-12 46.8 0.0 3.7e-12 46.4 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|385803958|ref|YP_005840358.1| - 7.7e-11 41.9 0.9 8.7e-05 22.1 0.0 2.1 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_26 PF13500.6 gi|385803958|ref|YP_005840358.1| - 6.8e-05 22.8 0.2 0.12 12.2 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_31 PF13614.6 gi|385803958|ref|YP_005840358.1| - 0.00042 20.3 0.1 0.041 13.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain CBP_BcsQ PF06564.12 gi|385803958|ref|YP_005840358.1| - 0.02 14.4 0.2 5 6.5 0.1 2.2 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ Zeta_toxin PF06414.12 gi|385803958|ref|YP_005840358.1| - 0.021 14.1 0.3 0.039 13.2 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin AAA_25 PF13481.6 gi|385803958|ref|YP_005840358.1| - 0.085 12.4 1.6 0.3 10.7 1.5 1.9 1 1 0 2 2 2 0 AAA domain Fer4_NifH PF00142.18 gi|385803958|ref|YP_005840358.1| - 0.25 10.8 1.5 13 5.2 0.3 2.4 3 0 0 3 3 3 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|385803958|ref|YP_005840358.1| - 2.4 7.3 3.9 2 7.5 1.8 1.8 2 0 0 2 2 2 0 Anion-transporting ATPase Com_YlbF PF06133.11 gi|385803959|ref|YP_005840359.1| - 3.1e-22 79.2 5.6 3.6e-22 79.0 5.6 1.0 1 0 0 1 1 1 1 Control of competence regulator ComK, YlbF/YmcA SH3BP5 PF05276.14 gi|385803959|ref|YP_005840359.1| - 0.0079 16.0 3.5 0.019 14.8 3.6 1.5 1 1 0 1 1 1 1 SH3 domain-binding protein 5 (SH3BP5) OmpH PF03938.14 gi|385803959|ref|YP_005840359.1| - 0.01 16.2 7.0 0.015 15.7 7.0 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF2937 PF11157.8 gi|385803959|ref|YP_005840359.1| - 0.015 15.0 2.9 0.018 14.8 2.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2937) NPV_P10 PF05531.12 gi|385803959|ref|YP_005840359.1| - 0.055 13.9 2.0 0.096 13.2 0.4 2.1 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF3080 PF11279.8 gi|385803959|ref|YP_005840359.1| - 0.089 12.0 2.5 0.1 11.8 2.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3080) Nif11 PF07862.11 gi|385803959|ref|YP_005840359.1| - 0.1 13.0 3.4 0.19 12.1 0.4 2.4 1 1 1 2 2 2 0 Nif11 domain Occludin_ELL PF07303.13 gi|385803959|ref|YP_005840359.1| - 0.14 12.9 2.7 0.38 11.5 2.2 1.7 1 1 1 2 2 2 0 Occludin homology domain AAA_15 PF13175.6 gi|385803959|ref|YP_005840359.1| - 0.15 11.7 0.9 0.17 11.6 0.9 1.0 1 0 0 1 1 1 0 AAA ATPase domain FTA4 PF13093.6 gi|385803959|ref|YP_005840359.1| - 0.16 11.9 1.6 0.18 11.7 1.6 1.1 1 0 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 MapZ_EC1 PF18041.1 gi|385803959|ref|YP_005840359.1| - 0.3 11.3 5.9 0.29 11.4 4.9 1.5 1 1 1 2 2 2 0 MapZ extracellular domain 1 Diphthamide_syn PF01866.17 gi|385803961|ref|YP_005840361.1| - 1.5e-75 254.5 0.0 1.9e-75 254.2 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein GTP-bdg_N PF13167.6 gi|385803961|ref|YP_005840361.1| - 0.032 14.9 0.0 0.33 11.6 0.0 2.2 1 1 1 2 2 2 0 GTP-binding GTPase N-terminal Lactamase_B_2 PF12706.7 gi|385803962|ref|YP_005840362.1| - 1.2e-16 60.9 3.2 1.5e-16 60.5 3.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|385803962|ref|YP_005840362.1| - 2e-11 44.1 0.1 3.7e-11 43.2 0.1 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain HisG PF01634.18 gi|385803963|ref|YP_005840363.1| - 0.00035 20.6 0.1 0.00067 19.7 0.1 1.5 1 1 0 1 1 1 1 ATP phosphoribosyltransferase PhoU PF01895.19 gi|385803964|ref|YP_005840364.1| - 1.1e-17 64.2 10.7 2.3e-16 60.0 5.1 2.5 2 1 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|385803964|ref|YP_005840364.1| - 4.7e-07 29.6 0.0 9.1e-07 28.7 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Amidase PF01425.21 gi|385803964|ref|YP_005840364.1| - 0.011 14.8 0.2 0.013 14.5 0.2 1.1 1 0 0 1 1 1 0 Amidase Exo70 PF03081.15 gi|385803964|ref|YP_005840364.1| - 0.014 14.5 0.3 0.021 13.9 0.3 1.1 1 0 0 1 1 1 0 Exo70 exocyst complex subunit SpoIIID PF12116.8 gi|385803964|ref|YP_005840364.1| - 1.6 8.9 5.8 11 6.2 0.7 3.0 3 0 0 3 3 3 0 Stage III sporulation protein D HTH_Crp_2 PF13545.6 gi|385803965|ref|YP_005840365.1| - 0.00073 19.5 0.0 0.0024 17.8 0.0 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|385803965|ref|YP_005840365.1| - 0.0031 17.1 0.0 0.0059 16.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding CHAD PF05235.14 gi|385803965|ref|YP_005840365.1| - 0.0049 16.9 0.6 0.023 14.7 0.0 2.0 2 1 0 2 2 2 1 CHAD domain MarR_2 PF12802.7 gi|385803965|ref|YP_005840365.1| - 0.0049 16.7 0.0 0.016 15.1 0.0 1.8 1 0 0 1 1 1 1 MarR family PhoU PF01895.19 gi|385803965|ref|YP_005840365.1| - 0.035 14.6 0.1 1.1 9.7 0.0 2.7 2 0 0 2 2 2 0 PhoU domain Rrf2 PF02082.20 gi|385803965|ref|YP_005840365.1| - 0.059 13.7 0.0 0.19 12.1 0.0 1.9 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 gi|385803965|ref|YP_005840365.1| - 0.093 12.5 0.0 2.4 8.0 0.0 2.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain DMAP_binding PF06464.11 gi|385803965|ref|YP_005840365.1| - 0.12 13.2 0.7 0.24 12.2 0.7 1.5 1 0 0 1 1 1 0 DMAP1-binding Domain Hexapep PF00132.24 gi|385803966|ref|YP_005840366.1| - 1.2e-12 47.1 2.3 1.5e-10 40.3 3.6 2.7 2 1 0 2 2 2 1 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|385803966|ref|YP_005840366.1| - 5.6e-09 35.6 1.8 9.2e-09 34.9 1.8 1.4 1 0 0 1 1 1 1 Hexapeptide repeat of succinyl-transferase ABC_tran PF00005.27 gi|385803968|ref|YP_005840368.1| - 2e-31 109.4 0.2 3.1e-31 108.7 0.2 1.3 1 0 0 1 1 1 1 ABC transporter RsgA_GTPase PF03193.16 gi|385803968|ref|YP_005840368.1| - 2.9e-05 24.0 0.9 0.00011 22.1 0.0 2.2 3 0 0 3 3 3 1 RsgA GTPase SMC_N PF02463.19 gi|385803968|ref|YP_005840368.1| - 7.4e-05 22.3 0.2 0.0032 16.9 0.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|385803968|ref|YP_005840368.1| - 8.7e-05 22.5 0.1 0.22 11.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|385803968|ref|YP_005840368.1| - 0.00025 21.6 0.1 0.0018 18.9 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|385803968|ref|YP_005840368.1| - 0.00028 21.3 0.4 0.00051 20.5 0.4 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|385803968|ref|YP_005840368.1| - 0.00057 19.6 0.0 0.0011 18.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|385803968|ref|YP_005840368.1| - 0.0042 17.4 0.2 0.0088 16.3 0.2 1.5 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|385803968|ref|YP_005840368.1| - 0.011 15.8 0.1 2.8 8.0 0.0 2.4 2 0 0 2 2 2 0 50S ribosome-binding GTPase Oxidored_FMN PF00724.20 gi|385803968|ref|YP_005840368.1| - 0.026 13.8 0.0 0.041 13.1 0.0 1.2 1 0 0 1 1 1 0 NADH:flavin oxidoreductase / NADH oxidase family SbcCD_C PF13558.6 gi|385803968|ref|YP_005840368.1| - 0.047 13.9 1.7 1.6 9.0 1.7 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit G-alpha PF00503.20 gi|385803968|ref|YP_005840368.1| - 0.056 12.6 0.0 0.063 12.4 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_15 PF13175.6 gi|385803968|ref|YP_005840368.1| - 0.082 12.6 0.0 5.2 6.7 0.0 2.1 1 1 0 2 2 2 0 AAA ATPase domain Zeta_toxin PF06414.12 gi|385803968|ref|YP_005840368.1| - 0.12 11.7 0.0 0.22 10.8 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Phosphonate-bd PF12974.7 gi|385803969|ref|YP_005840369.1| - 3.1e-37 128.5 0.0 3.8e-37 128.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein PhnG PF06754.12 gi|385803970|ref|YP_005840370.1| - 5.5e-25 88.0 0.6 6.2e-25 87.8 0.6 1.0 1 0 0 1 1 1 1 Phosphonate metabolism protein PhnG PhnI PF05861.12 gi|385803970|ref|YP_005840370.1| - 0.013 14.4 0.1 0.022 13.6 0.1 1.5 1 1 0 1 1 1 0 Bacterial phosphonate metabolism protein (PhnI) PhnH PF05845.12 gi|385803971|ref|YP_005840371.1| - 9.7e-25 87.4 0.1 1.3e-24 87.0 0.1 1.2 1 0 0 1 1 1 1 Bacterial phosphonate metabolism protein (PhnH) PhnI PF05861.12 gi|385803972|ref|YP_005840372.1| - 5.8e-142 472.7 0.0 6.8e-142 472.5 0.0 1.0 1 0 0 1 1 1 1 Bacterial phosphonate metabolism protein (PhnI) HTH_15 PF12324.8 gi|385803972|ref|YP_005840372.1| - 0.037 14.0 0.1 1.1 9.3 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase DprA_WH PF17782.1 gi|385803972|ref|YP_005840372.1| - 0.064 13.4 0.4 0.34 11.0 0.0 2.2 2 0 0 2 2 2 0 DprA winged helix domain PhnJ PF06007.11 gi|385803973|ref|YP_005840373.1| - 1.7e-132 440.6 0.0 2e-132 440.3 0.0 1.1 1 0 0 1 1 1 1 Phosphonate metabolism protein PhnJ ABC_tran PF00005.27 gi|385803974|ref|YP_005840374.1| - 2.1e-26 93.1 0.0 2.9e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385803974|ref|YP_005840374.1| - 1.9e-10 41.1 0.1 7e-07 29.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system oligo_HPY PF08352.12 gi|385803974|ref|YP_005840374.1| - 0.00056 20.4 0.0 0.0015 19.0 0.0 1.8 2 0 0 2 2 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|385803974|ref|YP_005840374.1| - 0.00065 20.0 0.2 0.0073 16.6 0.2 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|385803974|ref|YP_005840374.1| - 0.00095 18.7 0.6 0.79 9.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 gi|385803974|ref|YP_005840374.1| - 0.0023 17.5 0.7 0.0064 16.1 0.7 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|385803974|ref|YP_005840374.1| - 0.0061 16.9 0.2 0.0098 16.3 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|385803974|ref|YP_005840374.1| - 0.0094 15.7 0.1 1.4 8.6 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_15 PF13175.6 gi|385803974|ref|YP_005840374.1| - 0.017 14.9 0.0 0.78 9.4 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain DUF4314 PF14192.6 gi|385803974|ref|YP_005840374.1| - 0.026 14.4 0.1 3.6 7.6 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4314) AAA_33 PF13671.6 gi|385803974|ref|YP_005840374.1| - 0.033 14.3 0.2 0.27 11.4 0.2 2.1 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|385803974|ref|YP_005840374.1| - 0.046 13.5 0.1 0.11 12.3 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|385803974|ref|YP_005840374.1| - 0.064 13.7 0.4 1.8 9.0 0.4 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|385803974|ref|YP_005840374.1| - 0.065 13.1 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase Chitin_bind_4 PF00379.23 gi|385803974|ref|YP_005840374.1| - 0.12 13.0 0.1 0.23 12.0 0.1 1.4 1 0 0 1 1 1 0 Insect cuticle protein SbcCD_C PF13558.6 gi|385803974|ref|YP_005840374.1| - 0.12 12.7 0.0 0.36 11.1 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF87 PF01935.17 gi|385803974|ref|YP_005840374.1| - 0.13 12.3 0.9 0.46 10.5 0.1 2.1 2 1 0 2 2 2 0 Helicase HerA, central domain AAA_23 PF13476.6 gi|385803974|ref|YP_005840374.1| - 0.14 12.6 0.0 0.18 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|385803974|ref|YP_005840374.1| - 0.15 11.7 0.0 0.4 10.4 0.0 1.7 2 0 0 2 2 2 0 Sigma-54 interaction domain ABC_tran PF00005.27 gi|385803975|ref|YP_005840375.1| - 4.4e-28 98.5 0.0 1.4e-27 96.9 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|385803975|ref|YP_005840375.1| - 1.1e-07 32.0 0.0 0.0086 15.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385803975|ref|YP_005840375.1| - 2.1e-06 27.3 0.0 0.0009 18.7 0.1 3.0 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|385803975|ref|YP_005840375.1| - 8.4e-06 26.3 0.4 4.1e-05 24.0 0.4 2.1 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.6 gi|385803975|ref|YP_005840375.1| - 0.0017 18.6 0.3 0.024 14.9 0.1 2.9 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 gi|385803975|ref|YP_005840375.1| - 0.0017 18.7 0.3 0.025 14.9 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|385803975|ref|YP_005840375.1| - 0.0028 17.7 0.0 0.026 14.6 0.0 2.5 2 2 1 3 3 3 1 AAA domain RsgA_GTPase PF03193.16 gi|385803975|ref|YP_005840375.1| - 0.0033 17.3 0.0 0.0065 16.4 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 gi|385803975|ref|YP_005840375.1| - 0.0092 15.7 1.2 0.74 9.5 0.0 2.9 2 2 1 3 3 3 1 AAA domain Gtr1_RagA PF04670.12 gi|385803975|ref|YP_005840375.1| - 0.019 14.4 0.0 0.032 13.6 0.0 1.4 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region AAA_29 PF13555.6 gi|385803975|ref|YP_005840375.1| - 0.022 14.5 0.0 0.044 13.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|385803975|ref|YP_005840375.1| - 0.034 14.3 0.0 0.1 12.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|385803975|ref|YP_005840375.1| - 0.073 12.2 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_23 PF13476.6 gi|385803975|ref|YP_005840375.1| - 0.1 13.1 0.2 0.4 11.2 0.2 1.7 1 1 0 1 1 1 0 AAA domain Septin PF00735.18 gi|385803975|ref|YP_005840375.1| - 0.11 11.7 0.0 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 Septin Amidohydro_3 PF07969.11 gi|385803976|ref|YP_005840376.1| - 4.7e-13 49.4 5.1 8.3e-08 32.1 1.2 3.3 1 1 0 2 2 2 2 Amidohydrolase family Amidohydro_1 PF01979.20 gi|385803976|ref|YP_005840376.1| - 1.8e-06 27.6 8.3 3.1e-05 23.5 3.6 3.3 1 1 1 2 2 2 1 Amidohydrolase family Urease_alpha PF00449.20 gi|385803976|ref|YP_005840376.1| - 0.017 15.4 1.6 0.47 10.8 0.8 2.3 2 0 0 2 2 2 0 Urease alpha-subunit, N-terminal domain Yop-YscD_ppl PF16693.5 gi|385803976|ref|YP_005840376.1| - 0.12 11.8 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Inner membrane component of T3SS, periplasmic domain AP_endonuc_2 PF01261.24 gi|385803977|ref|YP_005840377.1| - 1.9e-22 79.7 0.2 2.3e-22 79.5 0.2 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel ArsP_1 PF03773.13 gi|385803978|ref|YP_005840378.1| - 3.1e-56 190.7 13.7 3.7e-56 190.4 13.7 1.0 1 0 0 1 1 1 1 Predicted permease HTH_20 PF12840.7 gi|385803979|ref|YP_005840379.1| - 3.5e-13 49.4 0.5 5.8e-13 48.7 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|385803979|ref|YP_005840379.1| - 7.8e-12 44.9 0.0 1.4e-11 44.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|385803979|ref|YP_005840379.1| - 0.0016 18.3 0.0 0.0028 17.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|385803979|ref|YP_005840379.1| - 0.019 14.5 0.6 0.098 12.2 0.1 2.4 3 1 0 3 3 3 0 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.16 gi|385803979|ref|YP_005840379.1| - 0.059 13.7 0.1 0.18 12.2 0.0 1.7 1 1 0 2 2 2 0 Penicillinase repressor DUF742 PF05331.11 gi|385803979|ref|YP_005840379.1| - 0.086 12.7 0.1 0.1 12.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HxlR PF01638.17 gi|385803979|ref|YP_005840379.1| - 0.15 12.0 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Phage_integrase PF00589.22 gi|385803980|ref|YP_005840380.1| - 1.6e-14 54.1 0.0 4.5e-14 52.6 0.0 1.7 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|385803980|ref|YP_005840380.1| - 2e-06 28.0 5.2 0.027 14.7 0.4 3.2 3 1 1 4 4 4 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|385803980|ref|YP_005840380.1| - 5.4e-06 26.8 1.6 5.2e-05 23.6 1.6 2.3 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain Phage_integr_3 PF16795.5 gi|385803980|ref|YP_005840380.1| - 0.055 13.4 0.0 0.25 11.3 0.0 1.9 2 0 0 2 2 2 0 Archaeal phage integrase ELL PF10390.9 gi|385803981|ref|YP_005840381.1| - 0.001 18.7 0.1 0.0012 18.4 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase II elongation factor ELL Rrf2 PF02082.20 gi|385803981|ref|YP_005840381.1| - 0.0025 18.1 0.0 0.0076 16.6 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator FtsH_ext PF06480.15 gi|385803981|ref|YP_005840381.1| - 0.0078 16.5 1.3 0.013 15.9 1.3 1.4 1 0 0 1 1 1 1 FtsH Extracellular Prismane PF03063.20 gi|385803981|ref|YP_005840381.1| - 0.065 11.9 2.0 0.61 8.7 0.5 1.9 1 1 1 2 2 2 0 Prismane/CO dehydrogenase family Iron_transport PF10634.9 gi|385803982|ref|YP_005840382.1| - 1.3e-05 25.4 0.0 0.0006 20.0 0.0 2.2 2 0 0 2 2 2 1 Fe2+ transport protein DUF2635 PF10948.8 gi|385803982|ref|YP_005840382.1| - 0.058 13.1 0.0 11 5.9 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2635) HTH_24 PF13412.6 gi|385803983|ref|YP_005840383.1| - 1.4e-19 69.4 0.4 8.5e-13 47.7 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|385803983|ref|YP_005840383.1| - 6.6e-13 48.5 1.1 1.5e-07 31.3 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.7 gi|385803983|ref|YP_005840383.1| - 2.8e-12 46.3 0.2 6.1e-07 29.2 0.0 2.2 2 0 0 2 2 2 2 MarR family HTH_AsnC-type PF13404.6 gi|385803983|ref|YP_005840383.1| - 5.6e-09 35.7 1.0 3.1e-05 23.7 0.1 2.9 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain HTH_5 PF01022.20 gi|385803983|ref|YP_005840383.1| - 1.8e-08 34.1 0.0 2.6e-07 30.4 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|385803983|ref|YP_005840383.1| - 2.9e-07 30.3 0.0 0.00036 20.4 0.0 2.2 2 0 0 2 2 2 2 MarR family HTH_10 PF04967.12 gi|385803983|ref|YP_005840383.1| - 1.4e-05 24.8 0.0 0.0045 16.8 0.0 3.1 3 0 0 3 3 3 1 HTH DNA binding domain HTH_IclR PF09339.10 gi|385803983|ref|YP_005840383.1| - 0.00021 21.0 0.0 0.0015 18.3 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_38 PF13936.6 gi|385803983|ref|YP_005840383.1| - 0.00034 20.3 2.4 0.002 17.8 0.0 2.6 2 1 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|385803983|ref|YP_005840383.1| - 0.00041 20.0 0.0 0.0009 18.9 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 TrmB PF01978.19 gi|385803983|ref|YP_005840383.1| - 0.0014 18.5 0.0 0.015 15.1 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB GerE PF00196.19 gi|385803983|ref|YP_005840383.1| - 0.0016 18.0 0.0 0.014 14.9 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_28 PF13518.6 gi|385803983|ref|YP_005840383.1| - 0.0028 17.8 0.3 0.026 14.6 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain RP-C PF03428.13 gi|385803983|ref|YP_005840383.1| - 0.0032 17.1 0.2 0.054 13.2 0.0 2.4 2 1 1 3 3 3 1 Replication protein C N-terminal domain HTH_30 PF13556.6 gi|385803983|ref|YP_005840383.1| - 0.0041 16.9 0.1 0.016 15.0 0.0 2.1 2 0 0 2 2 1 1 PucR C-terminal helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|385803983|ref|YP_005840383.1| - 0.0045 16.7 0.0 0.089 12.6 0.0 2.3 2 0 0 2 2 2 1 LexA DNA binding domain HTH_Crp_2 PF13545.6 gi|385803983|ref|YP_005840383.1| - 0.0053 16.7 0.0 0.068 13.1 0.0 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|385803983|ref|YP_005840383.1| - 0.0059 16.4 0.0 0.023 14.5 0.0 2.1 2 0 0 2 2 1 1 Homeodomain-like domain HTH_11 PF08279.12 gi|385803983|ref|YP_005840383.1| - 0.0071 16.3 0.1 0.023 14.6 0.0 1.9 3 0 0 3 3 2 1 HTH domain HTH_34 PF13601.6 gi|385803983|ref|YP_005840383.1| - 0.0095 16.1 0.0 2.7 8.3 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|385803983|ref|YP_005840383.1| - 0.025 15.1 0.1 1.6 9.3 0.0 2.4 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_7 PF02796.15 gi|385803983|ref|YP_005840383.1| - 0.035 14.2 0.1 0.1 12.7 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase HTH_DeoR PF08220.12 gi|385803983|ref|YP_005840383.1| - 0.045 13.5 0.0 0.12 12.2 0.0 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|385803983|ref|YP_005840383.1| - 0.049 13.8 0.0 0.22 11.7 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4 PF04545.16 gi|385803983|ref|YP_005840383.1| - 0.057 12.9 0.3 0.27 10.8 0.0 2.3 2 1 0 2 2 2 0 Sigma-70, region 4 FaeA PF04703.12 gi|385803983|ref|YP_005840383.1| - 0.059 13.8 0.1 0.4 11.1 0.0 2.0 2 0 0 2 2 2 0 FaeA-like protein CENP-B_N PF04218.13 gi|385803983|ref|YP_005840383.1| - 0.064 12.9 0.1 1.1 8.9 0.0 2.4 2 1 0 2 2 2 0 CENP-B N-terminal DNA-binding domain pXO2-72 PF17443.2 gi|385803983|ref|YP_005840383.1| - 0.068 13.4 0.0 19 5.6 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized protein pXO2-72 HTH_40 PF14493.6 gi|385803983|ref|YP_005840383.1| - 0.069 13.6 0.0 0.2 12.1 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_8 PF02954.19 gi|385803983|ref|YP_005840383.1| - 0.2 11.5 1.3 1.6 8.6 0.0 2.8 3 0 0 3 3 3 0 Bacterial regulatory protein, Fis family DUF2206 PF09971.9 gi|385803984|ref|YP_005840384.1| - 0.088 11.5 3.1 0.099 11.4 3.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2206) ADP_ribosyl_GH PF03747.14 gi|385803984|ref|YP_005840384.1| - 0.093 12.4 0.1 0.11 12.2 0.1 1.1 1 0 0 1 1 1 0 ADP-ribosylglycohydrolase UCR_TM PF02921.14 gi|385803984|ref|YP_005840384.1| - 3 8.4 4.7 3 8.4 0.2 2.5 2 1 1 3 3 3 0 Ubiquinol cytochrome reductase transmembrane region PQQ_2 PF13360.6 gi|385803985|ref|YP_005840385.1| - 4.3e-16 59.2 13.5 8.4e-09 35.4 0.7 3.2 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|385803985|ref|YP_005840385.1| - 2.6e-14 52.3 9.6 4.8e-05 23.1 0.0 6.6 7 0 0 7 7 7 3 PQQ enzyme repeat BBS2_Mid PF14783.6 gi|385803985|ref|YP_005840385.1| - 1.7e-06 28.1 0.5 0.0042 17.1 0.0 3.7 3 1 0 3 3 3 2 Ciliary BBSome complex subunit 2, middle region FG-GAP PF01839.23 gi|385803985|ref|YP_005840385.1| - 2.1e-06 27.7 8.7 0.28 11.4 0.0 4.9 4 0 0 4 4 4 3 FG-GAP repeat VCBS PF13517.6 gi|385803985|ref|YP_005840385.1| - 6.2e-06 26.7 24.3 0.0049 17.4 0.2 5.9 1 1 6 7 7 7 5 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella PQQ_3 PF13570.6 gi|385803985|ref|YP_005840385.1| - 9.4e-05 22.8 26.9 0.94 10.1 0.1 7.9 6 3 1 7 7 7 3 PQQ-like domain PepSY_2 PF13670.6 gi|385803985|ref|YP_005840385.1| - 0.073 13.1 0.7 9.2 6.3 0.1 3.0 3 0 0 3 3 3 0 Peptidase propeptide and YPEB domain EpuA PF11772.8 gi|385803985|ref|YP_005840385.1| - 0.083 12.6 0.6 0.21 11.3 0.6 1.7 1 0 0 1 1 1 0 DNA-directed RNA polymerase subunit beta ANAPC4_WD40 PF12894.7 gi|385803985|ref|YP_005840385.1| - 0.15 12.4 0.3 19 5.7 0.0 3.6 4 0 0 4 4 4 0 Anaphase-promoting complex subunit 4 WD40 domain Itfg2 PF15907.5 gi|385803985|ref|YP_005840385.1| - 0.79 8.7 3.7 5.4 6.0 0.1 3.2 3 1 0 4 4 4 0 Integrin-alpha FG-GAP repeat-containing protein 2 DDE_Tnp_1 PF01609.21 gi|385803986|ref|YP_005840386.1| - 0.061 13.0 0.0 0.11 12.2 0.0 1.4 1 1 0 1 1 1 0 Transposase DDE domain Rab5-bind PF09311.11 gi|385803986|ref|YP_005840386.1| - 0.17 11.3 0.0 0.45 9.9 0.0 1.6 2 0 0 2 2 2 0 Rabaptin-like protein TAT_signal PF10518.9 gi|385803988|ref|YP_005840388.1| - 0.01 15.7 0.1 0.022 14.6 0.1 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SnoaL_4 PF13577.6 gi|385803988|ref|YP_005840388.1| - 0.047 13.8 1.2 2.2 8.4 0.1 2.5 2 0 0 2 2 2 0 SnoaL-like domain HTH_24 PF13412.6 gi|385803989|ref|YP_005840389.1| - 1.3e-13 50.2 0.3 2e-13 49.7 0.3 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|385803989|ref|YP_005840389.1| - 6.9e-13 48.2 2.5 1.3e-12 47.3 2.5 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|385803989|ref|YP_005840389.1| - 8.5e-08 32.2 0.0 1.6e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|385803989|ref|YP_005840389.1| - 8.3e-07 28.8 0.0 1.6e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|385803989|ref|YP_005840389.1| - 5.4e-06 26.1 0.0 9.3e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|385803989|ref|YP_005840389.1| - 1e-05 25.4 0.1 1.7e-05 24.6 0.1 1.4 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.20 gi|385803989|ref|YP_005840389.1| - 0.00013 22.2 0.0 0.00027 21.2 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator Sigma70_r4_2 PF08281.12 gi|385803989|ref|YP_005840389.1| - 0.00017 21.2 0.1 0.0003 20.4 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_DeoR PF08220.12 gi|385803989|ref|YP_005840389.1| - 0.00029 20.5 0.2 0.0062 16.3 0.1 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.6 gi|385803989|ref|YP_005840389.1| - 0.00034 21.1 0.0 0.00076 19.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|385803989|ref|YP_005840389.1| - 0.00035 20.4 0.0 0.00063 19.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|385803989|ref|YP_005840389.1| - 0.00044 20.2 0.1 0.0007 19.5 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_28 PF13518.6 gi|385803989|ref|YP_005840389.1| - 0.001 19.1 0.1 0.0021 18.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.6 gi|385803989|ref|YP_005840389.1| - 0.0014 18.6 0.0 0.0021 18.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|385803989|ref|YP_005840389.1| - 0.0015 18.7 0.0 0.0027 17.9 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_CodY PF08222.11 gi|385803989|ref|YP_005840389.1| - 0.002 17.6 0.3 0.0038 16.7 0.3 1.4 1 0 0 1 1 1 1 CodY helix-turn-helix domain MarR PF01047.22 gi|385803989|ref|YP_005840389.1| - 0.0042 17.0 0.0 0.0068 16.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|385803989|ref|YP_005840389.1| - 0.0093 15.7 0.1 0.017 14.9 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Put_DNA-bind_N PF06971.13 gi|385803989|ref|YP_005840389.1| - 0.014 15.4 0.1 0.027 14.5 0.1 1.4 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HrcA_DNA-bdg PF03444.15 gi|385803989|ref|YP_005840389.1| - 0.028 14.1 0.0 0.05 13.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_Tnp_ISL3 PF13542.6 gi|385803989|ref|YP_005840389.1| - 0.028 13.8 0.2 0.049 13.0 0.2 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 gi|385803989|ref|YP_005840389.1| - 0.029 14.3 0.0 0.057 13.3 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.6 gi|385803989|ref|YP_005840389.1| - 0.067 13.0 0.2 0.14 12.0 0.2 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|385803989|ref|YP_005840389.1| - 0.09 12.6 0.1 0.17 11.7 0.1 1.3 1 0 0 1 1 1 0 HTH DNA binding domain HTH_29 PF13551.6 gi|385803989|ref|YP_005840389.1| - 0.096 12.7 0.1 0.18 11.8 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Rio2_N PF09202.11 gi|385803989|ref|YP_005840389.1| - 0.1 12.9 0.0 0.32 11.2 0.0 1.8 2 0 0 2 2 2 0 Rio2, N-terminal GntR PF00392.21 gi|385803989|ref|YP_005840389.1| - 0.12 12.0 0.0 0.3 10.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family RepL PF05732.11 gi|385803989|ref|YP_005840389.1| - 0.13 11.7 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_47 PF16221.5 gi|385803989|ref|YP_005840389.1| - 0.15 11.6 0.5 0.45 10.1 0.1 1.9 2 0 0 2 2 2 0 winged helix-turn-helix HTH_Mga PF08280.11 gi|385803989|ref|YP_005840389.1| - 0.17 12.0 0.0 0.26 11.4 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Amidohydro_1 PF01979.20 gi|385803990|ref|YP_005840390.1| - 5e-32 111.6 2.7 7.1e-30 104.5 2.7 2.6 1 1 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.22 gi|385803990|ref|YP_005840390.1| - 2.8e-08 33.5 0.1 3.8e-08 33.1 0.1 1.1 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.11 gi|385803990|ref|YP_005840390.1| - 3e-06 27.0 5.6 1.3e-05 24.9 1.8 2.1 2 0 0 2 2 2 2 Amidohydrolase family Proton_antipo_M PF00361.20 gi|385803991|ref|YP_005840391.1| - 3e-35 121.9 21.7 3e-35 121.9 21.7 1.7 1 1 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|385803991|ref|YP_005840391.1| - 4e-07 30.0 0.1 4e-07 30.0 0.1 4.5 4 1 1 5 5 5 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF2309 PF10070.9 gi|529167405|ref|YP_005840392.2| - 8.6e-250 831.2 0.0 1e-249 830.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2309) SRAP PF02586.14 gi|385803993|ref|YP_005840393.1| - 8.5e-65 218.4 0.0 9.7e-65 218.2 0.0 1.0 1 0 0 1 1 1 1 SOS response associated peptidase (SRAP) RNase_H_2 PF13482.6 gi|385803994|ref|YP_005840394.1| - 8.9e-37 126.6 0.0 1.1e-36 126.3 0.0 1.1 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_A_exo1 PF01612.20 gi|385803994|ref|YP_005840394.1| - 0.00072 19.3 0.1 0.0018 18.0 0.1 1.7 1 1 0 1 1 1 1 3'-5' exonuclease DNA_pol_B_exo2 PF10108.9 gi|385803994|ref|YP_005840394.1| - 0.08 12.6 0.1 0.7 9.5 0.0 2.1 2 0 0 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Glycos_transf_2 PF00535.26 gi|385803995|ref|YP_005840395.1| - 7.9e-20 71.3 0.1 1e-19 71.0 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|385803995|ref|YP_005840395.1| - 4.5e-07 30.0 0.1 5.7e-07 29.7 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|385803995|ref|YP_005840395.1| - 0.011 15.3 0.0 0.016 14.7 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 21 NTP_transf_3 PF12804.7 gi|385803995|ref|YP_005840395.1| - 0.021 15.2 0.1 0.087 13.2 0.0 1.7 1 1 1 2 2 2 0 MobA-like NTP transferase domain Bactofilin PF04519.13 gi|529167406|ref|YP_005840397.2| - 1.6e-13 50.8 4.0 4.4e-08 33.3 0.4 3.7 2 2 2 4 4 4 4 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|529167406|ref|YP_005840397.2| - 1.6e-06 27.6 7.5 0.035 13.8 0.1 5.8 4 2 1 5 5 5 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|529167406|ref|YP_005840397.2| - 7.6e-05 22.4 5.8 0.14 11.9 0.1 4.5 3 1 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase DUF3494 PF11999.8 gi|529167406|ref|YP_005840397.2| - 0.00098 18.8 0.1 0.017 14.8 0.1 2.6 2 1 0 2 2 2 1 Protein of unknown function (DUF3494) MMR_HSR1_C PF08438.10 gi|385803998|ref|YP_005840398.1| - 3e-30 105.1 0.1 4.8e-30 104.4 0.1 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|385803998|ref|YP_005840398.1| - 8.8e-21 74.1 0.0 9.6e-20 70.8 0.0 2.5 3 0 0 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.21 gi|385803998|ref|YP_005840398.1| - 5.3e-12 45.6 0.0 1.6e-11 44.1 0.0 1.8 2 0 0 2 2 2 1 TGS domain FeoB_N PF02421.18 gi|385803998|ref|YP_005840398.1| - 3.7e-10 39.5 0.1 6.4e-08 32.3 0.0 2.6 3 0 0 3 3 3 2 Ferrous iron transport protein B NOG1 PF06858.14 gi|385803998|ref|YP_005840398.1| - 0.0058 16.4 0.2 0.016 14.9 0.0 1.8 2 0 0 2 2 2 1 Nucleolar GTP-binding protein 1 (NOG1) Aminotran_1_2 PF00155.21 gi|385803999|ref|YP_005840399.1| - 2.3e-61 208.0 0.0 2.5e-61 207.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|385803999|ref|YP_005840399.1| - 7.6e-13 48.5 0.3 1.1e-12 48.0 0.3 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|385803999|ref|YP_005840399.1| - 7.5e-08 32.0 0.0 1.2e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|385803999|ref|YP_005840399.1| - 9.2e-08 31.4 0.0 1.2e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|385803999|ref|YP_005840399.1| - 7.1e-06 24.8 0.0 9.6e-06 24.4 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme NMT1_2 PF13379.6 gi|385804000|ref|YP_005840400.1| - 5.7e-29 101.6 0.0 7e-29 101.3 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|385804000|ref|YP_005840400.1| - 0.0012 18.8 0.0 0.0073 16.3 0.0 1.9 1 1 0 1 1 1 1 NMT1/THI5 like DUF4621 PF15414.6 gi|385804000|ref|YP_005840400.1| - 0.028 13.4 0.1 0.045 12.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4621) TAT_signal PF10518.9 gi|385804000|ref|YP_005840400.1| - 0.046 13.6 3.3 0.1 12.5 3.3 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|385804001|ref|YP_005840401.1| - 1.8e-20 73.5 9.7 1.8e-20 73.5 9.7 1.9 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component FA_desaturase PF00487.24 gi|385804001|ref|YP_005840401.1| - 0.06 13.2 1.2 0.12 12.2 1.2 1.5 1 0 0 1 1 1 0 Fatty acid desaturase ABC_tran PF00005.27 gi|385804002|ref|YP_005840402.1| - 3.4e-34 118.3 0.0 5.5e-34 117.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter RsgA_GTPase PF03193.16 gi|385804002|ref|YP_005840402.1| - 6.3e-06 26.2 0.0 1.1e-05 25.4 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_21 PF13304.6 gi|385804002|ref|YP_005840402.1| - 0.00045 20.1 0.1 0.0052 16.6 0.0 2.0 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|385804002|ref|YP_005840402.1| - 0.00052 20.5 0.1 0.0022 18.4 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|385804002|ref|YP_005840402.1| - 0.00087 19.8 0.4 0.061 13.9 0.1 2.5 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|385804002|ref|YP_005840402.1| - 0.0011 19.3 0.2 0.08 13.2 0.1 2.5 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|385804002|ref|YP_005840402.1| - 0.0022 18.4 0.1 0.0029 18.0 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|385804002|ref|YP_005840402.1| - 0.0025 18.3 0.0 0.0041 17.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|385804002|ref|YP_005840402.1| - 0.0054 16.5 0.0 0.009 15.8 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_30 PF13604.6 gi|385804002|ref|YP_005840402.1| - 0.0058 16.4 0.1 0.038 13.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|385804002|ref|YP_005840402.1| - 0.0061 16.6 0.1 0.014 15.3 0.1 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|385804002|ref|YP_005840402.1| - 0.011 15.4 0.0 0.027 14.2 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain PduV-EutP PF10662.9 gi|385804002|ref|YP_005840402.1| - 0.013 15.2 0.0 0.033 13.9 0.0 1.7 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_22 PF13401.6 gi|385804002|ref|YP_005840402.1| - 0.014 15.6 0.3 0.03 14.6 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|385804002|ref|YP_005840402.1| - 0.017 15.3 0.0 0.037 14.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|385804002|ref|YP_005840402.1| - 0.017 15.1 0.0 0.038 14.0 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 gi|385804002|ref|YP_005840402.1| - 0.027 14.0 0.7 0.17 11.4 0.1 2.4 2 1 1 3 3 3 0 AAA domain NB-ARC PF00931.22 gi|385804002|ref|YP_005840402.1| - 0.029 13.6 0.1 0.06 12.5 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain Rad17 PF03215.15 gi|385804002|ref|YP_005840402.1| - 0.036 14.0 0.0 0.056 13.4 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain NACHT PF05729.12 gi|385804002|ref|YP_005840402.1| - 0.041 13.8 0.0 0.078 12.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.6 gi|385804002|ref|YP_005840402.1| - 0.058 13.4 0.1 1.4 9.0 0.0 2.5 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.25 gi|385804002|ref|YP_005840402.1| - 0.071 12.8 0.1 0.087 12.5 0.1 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain ATPase_2 PF01637.18 gi|385804002|ref|YP_005840402.1| - 0.075 12.9 0.0 0.19 11.6 0.0 1.7 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea MMR_HSR1 PF01926.23 gi|385804002|ref|YP_005840402.1| - 0.086 12.9 0.3 0.41 10.8 0.0 2.2 3 0 0 3 3 3 0 50S ribosome-binding GTPase RuvB_N PF05496.12 gi|385804002|ref|YP_005840402.1| - 0.12 12.2 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain PhoH PF02562.16 gi|385804002|ref|YP_005840402.1| - 0.14 11.6 0.0 0.44 10.0 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein AAA_7 PF12775.7 gi|385804002|ref|YP_005840402.1| - 0.14 11.7 0.0 0.28 10.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|385804002|ref|YP_005840402.1| - 0.14 11.8 1.9 1.3 8.7 0.1 2.6 2 1 1 3 3 3 0 AAA domain DEAD PF00270.29 gi|385804002|ref|YP_005840402.1| - 0.15 11.8 0.5 2.7 7.7 0.1 2.5 1 1 1 2 2 2 0 DEAD/DEAH box helicase RNA_helicase PF00910.22 gi|385804002|ref|YP_005840402.1| - 0.17 12.3 0.0 0.35 11.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Mg_chelatase PF01078.21 gi|385804002|ref|YP_005840402.1| - 0.19 11.1 0.0 0.56 9.6 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ResIII PF04851.15 gi|385804004|ref|YP_005840404.1| - 2.8e-29 102.3 0.1 7.1e-28 97.7 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|385804004|ref|YP_005840404.1| - 5.3e-20 71.7 0.3 8.7e-20 71.0 0.3 1.3 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase Helicase_C PF00271.31 gi|385804004|ref|YP_005840404.1| - 1.2e-18 67.5 0.9 4.9e-17 62.3 0.3 2.7 3 0 0 3 3 3 1 Helicase conserved C-terminal domain XPB_DRD PF18458.1 gi|385804004|ref|YP_005840404.1| - 4.6e-17 61.6 0.3 1.3e-16 60.2 0.3 1.8 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain DEAD PF00270.29 gi|385804004|ref|YP_005840404.1| - 1e-09 38.4 0.0 5e-09 36.2 0.0 2.2 1 1 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C_2 PF13307.6 gi|385804004|ref|YP_005840404.1| - 0.00084 19.5 0.1 0.04 14.1 0.0 2.8 3 0 0 3 3 3 1 Helicase C-terminal domain DUF2075 PF09848.9 gi|385804004|ref|YP_005840404.1| - 0.0022 17.3 0.1 0.011 15.0 0.1 1.9 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|385804004|ref|YP_005840404.1| - 0.021 14.6 0.0 0.042 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|385804004|ref|YP_005840404.1| - 0.099 12.9 0.0 0.73 10.1 0.0 2.4 2 1 0 2 2 2 0 AAA domain DUF790 PF05626.11 gi|385804005|ref|YP_005840405.1| - 3.1e-127 424.5 0.6 3.7e-127 424.3 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF790) TBCC_N PF16752.5 gi|385804005|ref|YP_005840405.1| - 0.05 14.0 0.1 10 6.6 0.0 2.5 2 0 0 2 2 2 0 Tubulin-specific chaperone C N-terminal domain Methyltranf_PUA PF13636.6 gi|385804006|ref|YP_005840406.1| - 7.1e-07 29.1 0.0 1.1e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 RNA-binding PUA-like domain of methyltransferase RsmF Methyltr_RsmB-F PF01189.17 gi|385804007|ref|YP_005840407.1| - 1.3e-50 171.8 0.0 1.7e-50 171.5 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|385804007|ref|YP_005840407.1| - 3.3e-06 27.5 0.0 9.1e-06 26.1 0.0 1.7 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_31 PF13847.6 gi|385804007|ref|YP_005840407.1| - 5.6e-05 23.0 0.0 8.9e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|385804007|ref|YP_005840407.1| - 0.00067 19.8 0.0 0.0011 19.2 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase partial_CstF PF15861.5 gi|385804007|ref|YP_005840407.1| - 0.0039 16.9 0.1 0.19 11.5 0.1 2.6 2 0 0 2 2 2 1 Partial cleavage stimulation factor domain Methyltransf_25 PF13649.6 gi|385804007|ref|YP_005840407.1| - 0.041 14.6 0.0 0.23 12.2 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|385804007|ref|YP_005840407.1| - 0.19 11.3 0.0 0.3 10.6 0.0 1.5 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase PAC2 PF09754.9 gi|385804008|ref|YP_005840408.1| - 6.9e-39 134.1 0.2 8.1e-39 133.8 0.2 1.0 1 0 0 1 1 1 1 PAC2 family GrpE PF01025.19 gi|385804009|ref|YP_005840409.1| - 9.9e-33 113.1 13.1 9.9e-33 113.1 13.1 2.5 2 1 0 2 2 2 1 GrpE TarH PF02203.15 gi|385804009|ref|YP_005840409.1| - 0.018 15.0 1.1 0.033 14.1 1.1 1.5 1 0 0 1 1 1 0 Tar ligand binding domain homologue KH_1 PF00013.29 gi|385804009|ref|YP_005840409.1| - 0.025 14.4 0.0 0.18 11.6 0.0 2.2 2 0 0 2 2 2 0 KH domain Vps53_N PF04100.12 gi|385804009|ref|YP_005840409.1| - 2.3 7.1 9.4 0.059 12.3 3.0 1.5 2 0 0 2 2 2 0 Vps53-like, N-terminal TMPIT PF07851.13 gi|385804009|ref|YP_005840409.1| - 5.3 6.2 6.6 9.2 5.4 6.6 1.4 1 0 0 1 1 1 0 TMPIT-like protein HSP70 PF00012.20 gi|385804010|ref|YP_005840410.1| - 9.9e-238 790.2 15.5 1.3e-235 783.3 15.5 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 gi|385804010|ref|YP_005840410.1| - 4.8e-18 65.1 0.3 4.8e-18 65.1 0.3 2.5 2 1 0 2 2 2 1 MreB/Mbl protein FIVAR PF07554.13 gi|385804010|ref|YP_005840410.1| - 2.2e-05 25.1 2.4 0.00013 22.7 2.4 2.4 1 0 0 1 1 1 1 FIVAR domain FGGY_C PF02782.16 gi|385804010|ref|YP_005840410.1| - 0.012 15.3 0.0 0.027 14.2 0.0 1.6 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, C-terminal domain DUF4446 PF14584.6 gi|385804010|ref|YP_005840410.1| - 0.021 14.8 0.9 0.021 14.8 0.9 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4446) StbA PF06406.11 gi|385804010|ref|YP_005840410.1| - 0.046 13.0 0.0 0.13 11.5 0.0 1.7 1 0 0 1 1 1 0 StbA protein PhyH PF05721.13 gi|385804010|ref|YP_005840410.1| - 0.15 12.3 1.0 0.41 10.9 1.0 1.7 1 0 0 1 1 1 0 Phytanoyl-CoA dioxygenase (PhyH) DUF1664 PF07889.12 gi|385804010|ref|YP_005840410.1| - 0.2 11.7 2.4 0.56 10.3 2.4 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Cwf_Cwc_15 PF04889.12 gi|385804010|ref|YP_005840410.1| - 1.9 8.1 17.2 5.8 6.6 17.2 1.8 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein CorA PF01544.18 gi|385804010|ref|YP_005840410.1| - 2.6 7.3 7.0 7 5.9 7.0 1.7 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Rx_N PF18052.1 gi|385804010|ref|YP_005840410.1| - 5 7.5 9.2 1.2 9.5 4.9 2.2 2 0 0 2 2 2 0 Rx N-terminal domain DUF3584 PF12128.8 gi|385804010|ref|YP_005840410.1| - 5.6 4.3 15.4 9.4 3.6 15.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DnaJ_C PF01556.18 gi|385804011|ref|YP_005840411.1| - 2.4e-43 147.8 0.0 3.3e-43 147.3 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|385804011|ref|YP_005840411.1| - 3.3e-25 88.0 2.3 6.8e-25 87.0 2.3 1.6 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|385804011|ref|YP_005840411.1| - 1.5e-13 50.9 16.6 4.2e-13 49.4 16.6 1.9 1 0 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 gi|385804011|ref|YP_005840411.1| - 0.00054 19.9 16.4 0.023 14.6 4.7 2.8 1 1 1 2 2 2 2 Tryptophan RNA-binding attenuator protein inhibitory protein DZR PF12773.7 gi|385804011|ref|YP_005840411.1| - 0.07 13.2 13.0 0.18 11.8 13.1 1.7 1 1 1 2 2 2 0 Double zinc ribbon TackOD1 PF18551.1 gi|385804011|ref|YP_005840411.1| - 0.078 12.6 7.9 0.13 12.0 0.9 2.6 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 YjeF_N PF03853.15 gi|385804011|ref|YP_005840411.1| - 0.15 11.9 0.1 6.8 6.5 0.0 2.6 3 0 0 3 3 3 0 YjeF-related protein N-terminus zinc_ribbon_9 PF14369.6 gi|385804011|ref|YP_005840411.1| - 0.17 12.1 15.6 0.78 10.1 0.8 4.0 3 1 1 4 4 4 0 zinc-ribbon DUF5351 PF17302.2 gi|385804011|ref|YP_005840411.1| - 0.72 10.1 23.3 6 7.1 1.4 4.6 4 0 0 4 4 4 0 Family of unknown function (DUF5351) HypA PF01155.19 gi|385804011|ref|YP_005840411.1| - 0.83 9.7 11.4 1.1 9.3 1.6 2.4 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Mut7-C PF01927.16 gi|385804011|ref|YP_005840411.1| - 1.7 8.7 5.6 62 3.7 7.1 2.3 1 1 1 2 2 2 0 Mut7-C RNAse domain AMP-binding PF00501.28 gi|385804012|ref|YP_005840412.1| - 1.7e-05 23.6 0.0 0.0025 16.5 0.0 2.2 2 0 0 2 2 2 2 AMP-binding enzyme Acetyltransf_1 PF00583.25 gi|385804013|ref|YP_005840413.1| - 3.2e-06 27.4 0.0 6.4e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|385804013|ref|YP_005840413.1| - 1.3e-05 25.2 0.0 2.2e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|385804013|ref|YP_005840413.1| - 0.0027 18.1 0.0 0.0044 17.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain dCMP_cyt_deam_1 PF00383.23 gi|385804017|ref|YP_005840417.1| - 1.7e-16 59.9 0.3 2.1e-16 59.7 0.3 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|385804017|ref|YP_005840417.1| - 2e-12 47.5 0.8 2.9e-12 46.9 0.8 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|385804017|ref|YP_005840417.1| - 0.018 14.8 0.1 0.022 14.5 0.1 1.2 1 0 0 1 1 1 0 MafB19-like deaminase PNP_UDP_1 PF01048.20 gi|385804018|ref|YP_005840418.1| - 2.4e-43 148.1 0.4 2.9e-43 147.8 0.4 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Pyr_redox_2 PF07992.14 gi|385804019|ref|YP_005840419.1| - 2.2e-38 132.2 2.5 2.6e-38 131.9 2.5 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|385804019|ref|YP_005840419.1| - 2.8e-09 37.4 1.0 6.2e-07 29.9 0.1 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|385804019|ref|YP_005840419.1| - 9.5e-05 22.4 0.9 1.4 8.9 0.1 3.4 3 0 0 3 3 3 3 FAD-NAD(P)-binding Pyr_redox_3 PF13738.6 gi|385804019|ref|YP_005840419.1| - 0.00042 19.7 1.4 0.00064 19.1 0.2 1.9 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|385804019|ref|YP_005840419.1| - 0.00049 19.3 0.1 0.12 11.5 0.0 2.3 2 0 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.21 gi|385804019|ref|YP_005840419.1| - 0.048 13.0 0.9 4.1 6.7 0.1 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain HrcA_DNA-bdg PF03444.15 gi|385804020|ref|YP_005840420.1| - 1.4e-36 124.0 0.1 2e-36 123.5 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|385804020|ref|YP_005840420.1| - 1.7e-08 34.7 0.0 2.8e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|385804020|ref|YP_005840420.1| - 1.9e-06 27.7 0.0 3e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|385804020|ref|YP_005840420.1| - 0.051 13.5 0.0 0.095 12.6 0.0 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Epimerase PF01370.21 gi|385804021|ref|YP_005840421.1| - 4.5e-44 150.7 0.4 5.4e-44 150.5 0.4 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|385804021|ref|YP_005840421.1| - 3.5e-41 141.7 3.8 4.2e-40 138.2 3.8 2.3 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|385804021|ref|YP_005840421.1| - 2.5e-17 62.9 0.6 3.1e-17 62.6 0.6 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|385804021|ref|YP_005840421.1| - 2e-13 50.0 0.1 2.9e-13 49.5 0.1 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|385804021|ref|YP_005840421.1| - 1.6e-11 43.9 0.5 3.2e-08 33.0 0.1 2.6 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|385804021|ref|YP_005840421.1| - 2.8e-08 33.2 1.4 7.9e-06 25.2 0.6 2.3 2 1 0 2 2 2 2 Male sterility protein KR PF08659.10 gi|385804021|ref|YP_005840421.1| - 0.0089 15.9 0.1 0.67 9.8 0.1 2.4 2 0 0 2 2 2 1 KR domain DUF3558 PF12079.8 gi|385804021|ref|YP_005840421.1| - 0.073 13.1 0.2 0.1 12.6 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) adh_short PF00106.25 gi|385804021|ref|YP_005840421.1| - 0.075 12.5 1.5 0.89 9.0 0.1 2.7 1 1 1 2 2 2 0 short chain dehydrogenase DNA_topoisoIV PF00521.20 gi|385804022|ref|YP_005840422.1| - 1.6e-150 501.7 0.0 2.2e-150 501.3 0.0 1.2 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|385804022|ref|YP_005840422.1| - 6.2e-77 252.9 10.8 6.6e-13 47.9 0.0 6.4 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller DNA_gyraseB PF00204.25 gi|385804023|ref|YP_005840423.1| - 3.7e-59 199.1 0.7 7.6e-59 198.1 0.7 1.6 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|385804023|ref|YP_005840423.1| - 2.5e-30 104.4 0.1 5.6e-30 103.3 0.1 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 gi|385804023|ref|YP_005840423.1| - 2.9e-24 85.8 0.1 1.1e-23 83.8 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Intein_splicing PF14890.6 gi|385804023|ref|YP_005840423.1| - 4.4e-16 59.0 0.3 9.4e-16 58.0 0.3 1.6 1 0 0 1 1 1 1 Intein splicing domain Toprim PF01751.22 gi|385804023|ref|YP_005840423.1| - 1.5e-10 41.2 0.0 1.4e-09 38.1 0.0 2.4 2 0 0 2 2 2 1 Toprim domain HATPase_c_3 PF13589.6 gi|385804023|ref|YP_005840423.1| - 0.0023 17.8 1.3 0.0035 17.2 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NFACT-R_2 PF18297.1 gi|385804023|ref|YP_005840423.1| - 0.12 12.6 0.6 0.3 11.3 0.6 1.6 1 0 0 1 1 1 0 NFACT protein RNA binding domain Topo-VIb_trans PF09239.11 gi|385804024|ref|YP_005840424.1| - 8.2e-59 198.0 0.0 1.7e-58 196.9 0.0 1.6 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer Top6b_C PF18000.1 gi|385804024|ref|YP_005840424.1| - 4.6e-35 120.2 1.7 1.3e-34 118.8 1.7 1.9 1 0 0 1 1 1 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain Intein_splicing PF14890.6 gi|385804024|ref|YP_005840424.1| - 1.6e-18 67.0 0.0 3.1e-18 66.0 0.0 1.6 1 0 0 1 1 1 1 Intein splicing domain HATPase_c PF02518.26 gi|385804024|ref|YP_005840424.1| - 1.8e-11 44.5 0.0 4.2e-10 40.1 0.0 3.1 4 0 0 4 4 4 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|385804024|ref|YP_005840424.1| - 7e-07 29.1 0.0 8.3e-05 22.4 0.0 3.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|385804024|ref|YP_005840424.1| - 0.0073 16.3 1.2 0.11 12.5 0.0 3.3 3 1 0 3 3 3 1 Histidine kinase-like ATPase domain TP6A_N PF04406.14 gi|385804025|ref|YP_005840425.1| - 2.2e-14 53.2 0.3 4.2e-14 52.3 0.3 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase TMP-TENI PF02581.17 gi|385804026|ref|YP_005840426.1| - 5.1e-60 201.9 4.4 6e-60 201.7 4.4 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase ThiG PF05690.14 gi|385804026|ref|YP_005840426.1| - 5.8e-08 32.4 2.2 7.3e-08 32.0 2.2 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|385804026|ref|YP_005840426.1| - 1.4e-06 27.9 7.4 1.7e-06 27.6 7.4 1.1 1 0 0 1 1 1 1 Nitronate monooxygenase DHO_dh PF01180.21 gi|385804026|ref|YP_005840426.1| - 0.0009 18.5 0.6 0.0014 17.9 0.6 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase DUF561 PF04481.12 gi|385804026|ref|YP_005840426.1| - 0.0011 18.2 0.7 0.0049 16.1 0.3 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF561) Dus PF01207.17 gi|385804026|ref|YP_005840426.1| - 0.0054 15.9 0.2 0.0082 15.3 0.1 1.5 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) TGT PF01702.18 gi|385804026|ref|YP_005840426.1| - 0.076 12.1 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Queuine tRNA-ribosyltransferase G5 PF07501.12 gi|385804026|ref|YP_005840426.1| - 0.12 12.8 2.8 0.66 10.4 0.0 2.8 2 1 0 2 2 2 0 G5 domain PRAI PF00697.22 gi|385804026|ref|YP_005840426.1| - 0.13 12.0 0.8 6.6 6.5 0.3 2.4 2 1 0 2 2 2 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NanE PF04131.14 gi|385804026|ref|YP_005840426.1| - 0.14 11.4 9.8 6.5 5.9 0.1 3.5 1 1 3 4 4 4 0 Putative N-acetylmannosamine-6-phosphate epimerase HK PF02110.15 gi|385804027|ref|YP_005840427.1| - 6.4e-61 205.9 5.9 7.3e-61 205.7 5.9 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.17 gi|385804027|ref|YP_005840427.1| - 1e-05 25.2 3.6 1.3e-05 24.8 3.6 1.2 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.12 gi|385804028|ref|YP_005840428.1| - 1.8e-81 273.1 4.3 2.2e-81 272.9 4.3 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|385804028|ref|YP_005840428.1| - 1.4e-08 34.4 2.4 1.4e-08 34.4 2.4 1.8 2 0 0 2 2 2 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|385804028|ref|YP_005840428.1| - 0.0031 17.0 4.1 0.0063 16.0 4.1 1.6 1 1 0 1 1 1 1 Carbohydrate kinase HK PF02110.15 gi|385804028|ref|YP_005840428.1| - 0.0052 16.2 3.6 0.052 12.9 3.2 2.2 1 1 0 1 1 1 1 Hydroxyethylthiazole kinase family Lactamase_B_3 PF13483.6 gi|385804029|ref|YP_005840429.1| - 4.5e-29 101.4 0.1 6e-29 101.0 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DNA_ligase_A_M PF01068.21 gi|385804030|ref|YP_005840430.1| - 2.7e-49 167.6 0.0 3.9e-49 167.1 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|385804030|ref|YP_005840430.1| - 3.9e-31 108.7 0.0 7.4e-31 107.8 0.0 1.4 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|385804030|ref|YP_005840430.1| - 1.4e-17 64.1 0.3 4.1e-17 62.6 0.0 2.0 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|385804030|ref|YP_005840430.1| - 3.2e-05 24.3 0.0 5.4e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 RNA ligase DUF3839 PF12943.7 gi|385804030|ref|YP_005840430.1| - 0.12 11.8 0.1 0.19 11.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3839) Proteasome PF00227.26 gi|385804032|ref|YP_005840432.1| - 1.5e-51 174.6 0.3 1.8e-51 174.4 0.3 1.0 1 0 0 1 1 1 1 Proteasome subunit VP7 PF00434.18 gi|385804033|ref|YP_005840433.1| - 0.14 11.3 0.0 0.15 11.2 0.0 1.0 1 0 0 1 1 1 0 Glycoprotein VP7 DUF555 PF04475.12 gi|385804034|ref|YP_005840434.1| - 2.5e-44 149.7 0.0 2.9e-44 149.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zinc_ribbon_2 PF13240.6 gi|385804034|ref|YP_005840434.1| - 0.039 13.7 0.2 0.078 12.7 0.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DDE_Tnp_1 PF01609.21 gi|385804035|ref|YP_005840435.1| - 0.082 12.5 0.0 0.15 11.7 0.0 1.4 1 1 0 1 1 1 0 Transposase DDE domain CBS PF00571.28 gi|385804036|ref|YP_005840436.1| - 9.2e-20 70.9 4.7 1.4e-12 47.8 0.1 2.4 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.22 gi|385804036|ref|YP_005840436.1| - 7.2e-11 42.0 0.1 1.4e-10 41.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|385804036|ref|YP_005840436.1| - 1.1e-09 38.4 0.4 2.4e-09 37.4 0.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|385804036|ref|YP_005840436.1| - 7e-06 26.0 0.0 1e-05 25.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|385804036|ref|YP_005840436.1| - 7.2e-05 22.7 0.1 0.00014 21.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|385804036|ref|YP_005840436.1| - 0.0059 17.0 0.0 0.0098 16.3 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 gi|385804036|ref|YP_005840436.1| - 0.019 14.8 0.0 0.036 13.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|385804036|ref|YP_005840436.1| - 0.13 12.3 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA AIRS_C PF02769.22 gi|385804037|ref|YP_005840437.1| - 1.3e-19 70.8 0.0 2.5e-19 69.9 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|385804037|ref|YP_005840437.1| - 9.5e-12 45.4 3.5 1.8e-11 44.5 3.5 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain PsaD PF02531.16 gi|385804037|ref|YP_005840437.1| - 0.058 12.9 0.0 0.24 10.9 0.0 1.9 2 0 0 2 2 2 0 PsaD Peptidase_M50 PF02163.22 gi|385804039|ref|YP_005840439.1| - 0.0016 17.7 13.3 0.1 11.9 0.9 3.0 1 1 1 2 2 2 2 Peptidase family M50 Tmemb_185A PF10269.9 gi|385804039|ref|YP_005840439.1| - 0.0069 16.1 3.1 0.026 14.2 3.1 2.0 1 1 0 1 1 1 1 Transmembrane Fragile-X-F protein TraB PF01963.17 gi|385804040|ref|YP_005840440.1| - 1.4e-27 97.3 0.1 1.8e-15 57.5 0.0 2.2 2 0 0 2 2 2 2 TraB family DNase-RNase PF02577.14 gi|385804041|ref|YP_005840441.1| - 1.3e-34 118.7 0.0 1.4e-34 118.5 0.0 1.1 1 0 0 1 1 1 1 Bifunctional nuclease tRNA-synt_1 PF00133.22 gi|385804043|ref|YP_005840443.1| - 4.2e-179 596.7 2.1 5.5e-179 596.3 2.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|385804043|ref|YP_005840443.1| - 9e-31 106.9 0.1 1.9e-30 105.8 0.1 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|385804043|ref|YP_005840443.1| - 4.2e-27 94.9 2.7 1e-10 40.9 0.0 4.6 5 1 0 5 5 5 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|385804043|ref|YP_005840443.1| - 6e-05 22.6 0.0 0.00014 21.4 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|385804043|ref|YP_005840443.1| - 0.0004 19.4 0.0 0.009 15.0 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.19 gi|385804043|ref|YP_005840443.1| - 0.014 14.8 0.0 0.053 12.9 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain zf-FPG_IleRS PF06827.14 gi|385804043|ref|YP_005840443.1| - 0.094 12.6 0.2 0.24 11.3 0.2 1.7 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS Dak1 PF02733.17 gi|385804044|ref|YP_005840444.1| - 1.5e-119 398.5 6.3 1.7e-119 398.3 6.3 1.0 1 0 0 1 1 1 1 Dak1 domain Dak2 PF02734.17 gi|385804045|ref|YP_005840445.1| - 1.2e-47 162.0 0.6 1.2e-47 162.0 0.6 1.5 2 0 0 2 2 2 1 DAK2 domain EIIA-man PF03610.16 gi|385804046|ref|YP_005840446.1| - 6.9e-17 61.8 6.2 3.3e-09 37.0 2.3 2.1 1 1 0 2 2 2 2 PTS system fructose IIA component DAO PF01266.24 gi|385804047|ref|YP_005840447.1| - 6.7e-58 197.0 3.9 1e-57 196.4 3.9 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|385804047|ref|YP_005840447.1| - 6.6e-06 25.6 0.3 2e-05 24.0 0.3 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|385804047|ref|YP_005840447.1| - 1.1e-05 24.9 6.1 5.3e-05 22.6 6.1 1.8 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|385804047|ref|YP_005840447.1| - 0.00072 18.4 3.9 0.39 9.3 2.1 2.1 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.6 gi|385804047|ref|YP_005840447.1| - 0.0026 17.9 6.0 0.0053 17.0 5.2 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|385804047|ref|YP_005840447.1| - 0.015 15.8 3.5 0.28 11.8 1.4 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|385804047|ref|YP_005840447.1| - 0.019 14.9 1.6 0.038 13.9 1.6 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.6 gi|385804047|ref|YP_005840447.1| - 0.022 14.0 1.9 2.7 7.1 0.5 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|385804047|ref|YP_005840447.1| - 0.036 13.4 5.1 0.11 11.8 5.1 1.8 1 1 0 1 1 1 0 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|385804047|ref|YP_005840447.1| - 0.059 12.4 11.4 0.57 9.2 11.4 2.0 1 1 0 1 1 1 0 FAD binding domain Lycopene_cycl PF05834.12 gi|385804047|ref|YP_005840447.1| - 0.086 11.9 4.7 2.3 7.2 0.1 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein Thi4 PF01946.17 gi|385804047|ref|YP_005840447.1| - 0.23 10.7 5.6 0.066 12.4 1.8 2.0 3 0 0 3 3 3 0 Thi4 family NAD_binding_9 PF13454.6 gi|385804047|ref|YP_005840447.1| - 7.9 6.4 8.1 1.2 9.2 2.0 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding Hydrolase_3 PF08282.12 gi|385804048|ref|YP_005840448.1| - 1.1e-27 97.4 0.0 4.2e-18 66.0 0.0 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|385804048|ref|YP_005840448.1| - 4e-06 27.3 0.4 0.0013 19.0 0.4 2.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|385804048|ref|YP_005840448.1| - 5.7e-06 26.0 0.0 7.7e-05 22.3 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.7 gi|385804048|ref|YP_005840448.1| - 0.00034 21.1 4.1 0.32 11.4 0.0 3.3 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|385804048|ref|YP_005840448.1| - 0.039 13.1 0.2 0.14 11.2 0.0 1.9 2 0 0 2 2 2 0 Trehalose-phosphatase HAD_2 PF13419.6 gi|385804048|ref|YP_005840448.1| - 0.13 12.4 0.5 0.5 10.4 0.0 2.2 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase zf-CCHC_5 PF14787.6 gi|385804049|ref|YP_005840449.1| - 0.027 14.2 0.1 0.027 14.2 0.1 1.6 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger zf-CCHC PF00098.23 gi|385804049|ref|YP_005840449.1| - 0.077 13.1 0.5 0.11 12.7 0.5 1.2 1 0 0 1 1 1 0 Zinc knuckle Methyltransf_11 PF08241.12 gi|385804050|ref|YP_005840450.1| - 3e-17 63.1 0.0 4.6e-17 62.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|385804050|ref|YP_005840450.1| - 2.3e-15 57.1 0.0 3.8e-15 56.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|385804050|ref|YP_005840450.1| - 2.5e-07 30.6 0.0 3.1e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|385804050|ref|YP_005840450.1| - 3.3e-07 29.9 0.0 4.7e-07 29.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|385804050|ref|YP_005840450.1| - 8.4e-06 25.7 0.0 1.1e-05 25.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|385804050|ref|YP_005840450.1| - 0.00079 20.1 0.0 0.0013 19.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|385804050|ref|YP_005840450.1| - 0.0012 18.0 0.0 0.0015 17.7 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase FYVE PF01363.21 gi|385804051|ref|YP_005840451.1| - 0.00027 21.0 0.6 0.00029 20.9 0.6 1.1 1 0 0 1 1 1 1 FYVE zinc finger HypA PF01155.19 gi|385804051|ref|YP_005840451.1| - 0.00076 19.5 1.0 0.00084 19.3 1.0 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|385804051|ref|YP_005840451.1| - 0.0051 16.8 0.9 0.0059 16.6 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon TackOD1 PF18551.1 gi|385804051|ref|YP_005840451.1| - 0.0058 16.3 0.3 0.0058 16.3 0.3 1.1 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 Rubredoxin_2 PF18073.1 gi|385804051|ref|YP_005840451.1| - 0.006 16.3 5.0 0.0094 15.7 5.0 1.3 1 0 0 1 1 1 1 Rubredoxin metal binding domain zf-C2H2_11 PF16622.5 gi|385804051|ref|YP_005840451.1| - 0.024 14.4 0.6 0.024 14.4 0.6 2.2 2 0 0 2 2 2 0 zinc-finger C2H2-type zinc_ribbon_15 PF17032.5 gi|385804051|ref|YP_005840451.1| - 0.029 15.1 1.3 0.033 14.9 1.3 1.1 1 0 0 1 1 1 0 zinc-ribbon family Zn-ribbon_8 PF09723.10 gi|385804051|ref|YP_005840451.1| - 0.035 14.2 4.0 0.08 13.1 4.0 1.6 1 1 0 1 1 1 0 Zinc ribbon domain DUF35_N PF12172.8 gi|385804051|ref|YP_005840451.1| - 0.061 13.2 4.1 0.075 12.9 4.1 1.2 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) RNA_POL_M_15KD PF02150.16 gi|385804051|ref|YP_005840451.1| - 0.27 11.2 3.8 1.1 9.2 0.3 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit DUF368 PF04018.13 gi|385804052|ref|YP_005840452.1| - 9.8e-62 208.7 20.9 1.5e-61 208.2 20.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF368) UDPG_MGDP_dh_N PF03721.14 gi|385804053|ref|YP_005840453.1| - 1.2e-47 161.9 0.1 3.4e-46 157.2 0.0 2.8 2 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|385804053|ref|YP_005840453.1| - 6e-34 116.1 0.1 1.1e-33 115.3 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|385804053|ref|YP_005840453.1| - 2.9e-26 91.9 0.2 7.2e-26 90.6 0.2 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Pyr_redox PF00070.27 gi|385804053|ref|YP_005840453.1| - 0.00017 22.0 0.6 0.00089 19.8 0.3 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|385804053|ref|YP_005840453.1| - 0.00023 21.1 0.0 0.00053 19.9 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|385804053|ref|YP_005840453.1| - 0.0012 18.2 0.1 0.0021 17.4 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|385804053|ref|YP_005840453.1| - 0.0037 16.9 0.0 0.01 15.5 0.0 1.8 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|385804053|ref|YP_005840453.1| - 0.011 15.7 0.0 0.023 14.6 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|385804053|ref|YP_005840453.1| - 0.021 14.2 0.1 0.62 9.4 0.0 2.5 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|385804053|ref|YP_005840453.1| - 0.044 14.0 0.3 0.15 12.3 0.2 2.0 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain CHASE2 PF05226.11 gi|385804053|ref|YP_005840453.1| - 0.046 13.4 1.1 0.15 11.7 0.2 2.1 1 1 1 2 2 2 0 CHASE2 domain TrkA_N PF02254.18 gi|385804053|ref|YP_005840453.1| - 0.048 13.9 0.7 0.56 10.5 0.0 3.0 3 1 0 3 3 3 0 TrkA-N domain AlaDh_PNT_C PF01262.21 gi|385804053|ref|YP_005840453.1| - 0.13 11.5 0.0 0.27 10.5 0.0 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Rossmann-like PF10727.9 gi|385804053|ref|YP_005840453.1| - 0.25 11.2 1.2 0.5 10.2 0.5 1.9 2 0 0 2 2 1 0 Rossmann-like domain AglB_L1 PF18079.1 gi|385804054|ref|YP_005840454.1| - 1e-19 70.6 5.6 1e-19 70.6 5.6 1.9 2 0 0 2 2 2 1 Archaeal glycosylation protein B long peripheral domain STT3 PF02516.14 gi|385804054|ref|YP_005840454.1| - 4.3e-18 65.5 23.6 2.1e-17 63.2 20.0 2.8 2 1 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit NTP_transferase PF00483.23 gi|385804055|ref|YP_005840455.1| - 1e-41 143.1 0.0 1.2e-41 143.0 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|385804055|ref|YP_005840455.1| - 1.9e-14 54.3 0.0 2.3e-14 54.1 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|385804055|ref|YP_005840455.1| - 6.3e-05 22.8 0.0 0.0003 20.6 0.0 1.9 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GDP_Man_Dehyd PF16363.5 gi|385804056|ref|YP_005840456.1| - 2.3e-66 224.5 0.0 2.7e-66 224.2 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|385804056|ref|YP_005840456.1| - 2.3e-60 204.1 0.1 2.8e-60 203.8 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|385804056|ref|YP_005840456.1| - 8.6e-21 74.2 0.0 1.2e-20 73.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|385804056|ref|YP_005840456.1| - 3.2e-15 56.0 0.1 4.1e-15 55.6 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|385804056|ref|YP_005840456.1| - 4.3e-13 49.1 0.0 1.3e-12 47.4 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|385804056|ref|YP_005840456.1| - 1.5e-07 30.8 1.5 6.7e-06 25.5 0.2 2.4 2 1 0 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.6 gi|385804056|ref|YP_005840456.1| - 1.8e-07 31.2 0.2 1.4e-05 25.1 0.0 2.2 2 0 0 2 2 2 1 NAD(P)H-binding NmrA PF05368.13 gi|385804056|ref|YP_005840456.1| - 1.7e-05 24.5 0.1 2.6e-05 23.9 0.1 1.4 1 1 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|385804056|ref|YP_005840456.1| - 0.0006 19.3 0.2 0.0037 16.7 0.2 2.1 1 1 0 1 1 1 1 short chain dehydrogenase 3HCDH_N PF02737.18 gi|385804056|ref|YP_005840456.1| - 0.058 13.3 0.2 0.15 12.0 0.0 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KR PF08659.10 gi|385804056|ref|YP_005840456.1| - 0.076 12.9 0.5 1.7 8.5 0.5 2.2 1 1 0 1 1 1 0 KR domain ABC_tran PF00005.27 gi|385804057|ref|YP_005840457.1| - 1.5e-32 113.0 0.0 2.6e-32 112.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|385804057|ref|YP_005840457.1| - 3.3e-12 46.7 5.8 4.6e-12 46.2 5.8 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 gi|385804057|ref|YP_005840457.1| - 6e-07 29.1 1.4 2.1e-05 24.0 1.4 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|385804057|ref|YP_005840457.1| - 0.00048 20.1 0.0 0.0012 18.8 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|385804057|ref|YP_005840457.1| - 0.0023 17.7 0.0 0.0048 16.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|385804057|ref|YP_005840457.1| - 0.0063 17.0 0.0 0.011 16.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|385804057|ref|YP_005840457.1| - 0.0089 15.6 0.1 0.16 11.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|385804057|ref|YP_005840457.1| - 0.01 16.1 0.3 0.13 12.5 0.2 2.3 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|385804057|ref|YP_005840457.1| - 0.028 14.8 0.2 0.082 13.3 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|385804057|ref|YP_005840457.1| - 0.04 14.0 0.0 0.099 12.7 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|385804057|ref|YP_005840457.1| - 0.045 13.5 0.1 0.23 11.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.20 gi|385804057|ref|YP_005840457.1| - 0.084 12.0 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit Zeta_toxin PF06414.12 gi|385804057|ref|YP_005840457.1| - 0.094 12.0 0.0 0.23 10.7 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin DUF87 PF01935.17 gi|385804057|ref|YP_005840457.1| - 0.14 12.2 0.3 0.43 10.6 0.3 1.8 1 1 0 1 1 1 0 Helicase HerA, central domain DEAD PF00270.29 gi|385804057|ref|YP_005840457.1| - 0.26 11.0 0.5 1.2 8.9 0.5 2.0 1 1 0 1 1 1 0 DEAD/DEAH box helicase FA_desaturase PF00487.24 gi|385804057|ref|YP_005840457.1| - 0.27 11.0 1.1 4 7.2 0.4 2.3 2 0 0 2 2 2 0 Fatty acid desaturase Glycos_transf_1 PF00534.20 gi|385804058|ref|YP_005840458.1| - 5.3e-37 127.0 0.0 1.1e-36 126.0 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|385804058|ref|YP_005840458.1| - 8.5e-32 110.4 0.0 1.4e-31 109.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|385804058|ref|YP_005840458.1| - 2.5e-14 53.6 0.0 2.7e-13 50.3 0.0 2.3 3 0 0 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|385804058|ref|YP_005840458.1| - 2.2e-12 47.2 0.0 4e-12 46.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|385804058|ref|YP_005840458.1| - 2.9e-07 31.1 0.0 1.1e-06 29.2 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|385804058|ref|YP_005840458.1| - 4.2e-06 26.8 0.0 7.8e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Methyltransf_21 PF05050.12 gi|385804064|ref|YP_005840464.1| - 0.011 15.7 0.0 0.015 15.3 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase FkbM domain RrnaAD PF00398.20 gi|385804064|ref|YP_005840464.1| - 0.17 10.9 0.0 0.27 10.2 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_21 PF05050.12 gi|385804065|ref|YP_005840465.1| - 4e-07 30.2 0.0 6.6e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|385804065|ref|YP_005840465.1| - 0.014 15.1 0.0 0.017 14.9 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein V_cholerae_RfbT PF05575.11 gi|385804065|ref|YP_005840465.1| - 0.06 12.6 0.0 0.07 12.4 0.0 1.2 1 0 0 1 1 1 0 Vibrio cholerae RfbT protein Glyco_trans_1_4 PF13692.6 gi|385804067|ref|YP_005840467.1| - 1e-19 71.3 0.0 1.6e-19 70.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|385804067|ref|YP_005840467.1| - 5.5e-17 61.8 0.0 8.8e-17 61.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|385804067|ref|YP_005840467.1| - 0.00037 20.5 0.0 0.00094 19.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|385804067|ref|YP_005840467.1| - 0.0064 16.9 0.0 0.014 15.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycogen_syn PF05693.13 gi|385804067|ref|YP_005840467.1| - 0.13 10.7 0.0 0.2 10.2 0.0 1.2 1 0 0 1 1 1 0 Glycogen synthase DUF892 PF05974.12 gi|385804068|ref|YP_005840468.1| - 0.014 15.4 0.0 0.025 14.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF892) DUF354 PF04007.12 gi|385804068|ref|YP_005840468.1| - 0.017 14.2 0.0 0.031 13.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF354) Epimerase_2 PF02350.19 gi|385804068|ref|YP_005840468.1| - 0.023 13.6 0.0 1.8 7.3 0.0 2.2 2 0 0 2 2 2 0 UDP-N-acetylglucosamine 2-epimerase MAF_flag10 PF01973.18 gi|385804068|ref|YP_005840468.1| - 0.046 13.4 0.0 0.13 12.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function DUF115 DDE_Tnp_1 PF01609.21 gi|385804069|ref|YP_005840469.1| - 1.2e-19 70.8 3.7 3.9e-19 69.1 3.7 1.7 1 1 0 1 1 1 1 Transposase DDE domain DUF1989 PF09347.10 gi|385804069|ref|YP_005840469.1| - 0.00053 19.7 0.4 0.0008 19.1 0.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1989) DDE_Tnp_1_3 PF13612.6 gi|385804069|ref|YP_005840469.1| - 0.00067 19.7 0.0 0.0011 19.0 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|385804069|ref|YP_005840469.1| - 0.00087 19.3 0.0 0.0025 17.8 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_6 PF13751.6 gi|385804069|ref|YP_005840469.1| - 0.0041 17.3 0.2 0.011 15.9 0.0 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|385804069|ref|YP_005840469.1| - 0.028 14.8 0.1 0.058 13.8 0.1 1.6 1 0 0 1 1 1 0 Transposase DDE domain Glycos_transf_1 PF00534.20 gi|385804070|ref|YP_005840470.1| - 2.7e-28 98.6 0.0 3.8e-28 98.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|385804070|ref|YP_005840470.1| - 2.1e-26 92.9 0.0 3.8e-26 92.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|385804070|ref|YP_005840470.1| - 0.00052 20.3 0.0 0.0019 18.5 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|385804071|ref|YP_005840471.1| - 1.5e-22 80.2 0.5 2.1e-22 79.8 0.1 1.4 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|385804071|ref|YP_005840471.1| - 3.4e-08 33.7 0.0 6.2e-08 32.8 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|385804071|ref|YP_005840471.1| - 1.5e-07 31.2 0.2 1.5e-07 31.2 0.2 1.7 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|385804071|ref|YP_005840471.1| - 0.0024 17.4 0.0 0.0058 16.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|385804071|ref|YP_005840471.1| - 0.02 14.8 0.0 0.034 14.1 0.0 1.5 1 1 0 1 1 1 0 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|385804072|ref|YP_005840472.1| - 6e-17 62.0 0.3 4.9e-16 59.0 0.1 2.1 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|385804072|ref|YP_005840472.1| - 6.5e-09 36.0 0.6 1e-08 35.4 0.6 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|385804072|ref|YP_005840472.1| - 4.3e-06 27.1 0.0 8.8e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.7 gi|385804072|ref|YP_005840472.1| - 3.5e-05 24.2 0.1 5.4e-05 23.6 0.1 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain RHH_1 PF01402.21 gi|385804074|ref|YP_005840474.1| - 6.7e-05 22.7 0.0 0.00012 21.8 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF2742 PF10888.8 gi|385804077|ref|YP_005840477.1| - 0.091 13.0 0.0 0.11 12.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2742) HMGL-like PF00682.19 gi|385804078|ref|YP_005840478.1| - 4.9e-84 282.0 4.7 7.1e-84 281.5 4.7 1.2 1 0 0 1 1 1 1 HMGL-like PSK_trans_fac PF07704.11 gi|385804078|ref|YP_005840478.1| - 0.12 13.2 2.7 6.9 7.5 0.6 2.9 2 0 0 2 2 2 0 Rv0623-like transcription factor Radical_SAM PF04055.21 gi|385804078|ref|YP_005840478.1| - 0.2 12.0 0.8 2.7 8.4 0.0 2.9 2 2 1 3 3 3 0 Radical SAM superfamily TPP_enzyme_C PF02775.21 gi|385804080|ref|YP_005840480.1| - 6.6e-50 168.9 0.8 1.5e-49 167.7 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|385804080|ref|YP_005840480.1| - 5e-48 163.0 0.2 1.7e-47 161.2 0.2 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|385804080|ref|YP_005840480.1| - 9.5e-44 148.5 0.0 2.2e-43 147.3 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.16 gi|385804080|ref|YP_005840480.1| - 0.01 15.6 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit ALS_ss_C PF10369.9 gi|385804081|ref|YP_005840481.1| - 1.3e-20 73.4 0.0 2.7e-20 72.4 0.0 1.5 1 0 0 1 1 1 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 gi|385804081|ref|YP_005840481.1| - 7.1e-17 61.0 0.2 3.4e-16 58.8 0.1 2.0 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|385804081|ref|YP_005840481.1| - 5.5e-11 42.0 0.4 1.4e-10 40.8 0.1 1.9 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.6 gi|385804081|ref|YP_005840481.1| - 4.8e-05 23.2 0.1 0.0001 22.2 0.1 1.5 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|385804081|ref|YP_005840481.1| - 0.00061 20.3 0.0 0.0012 19.4 0.0 1.4 1 0 0 1 1 1 1 ACT domain Phage_rep_org_N PF09681.10 gi|385804081|ref|YP_005840481.1| - 0.13 12.2 0.1 0.26 11.2 0.0 1.5 1 1 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) IlvN PF07991.12 gi|385804082|ref|YP_005840482.1| - 9.2e-69 230.2 0.6 1.3e-68 229.7 0.6 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|385804082|ref|YP_005840482.1| - 7.4e-62 207.9 0.2 1.3e-61 207.1 0.2 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.17 gi|385804082|ref|YP_005840482.1| - 8.4e-08 32.7 0.2 2.5e-07 31.2 0.0 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|385804082|ref|YP_005840482.1| - 1.5e-06 27.7 0.0 2.8e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|385804082|ref|YP_005840482.1| - 0.00048 20.3 0.0 0.0011 19.1 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Oxidored_nitro PF00148.19 gi|385804082|ref|YP_005840482.1| - 0.0013 17.6 0.1 0.0052 15.6 0.0 1.9 2 0 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase AdoHcyase_NAD PF00670.21 gi|385804082|ref|YP_005840482.1| - 0.0038 17.3 0.0 0.0079 16.3 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Mur_ligase PF01225.25 gi|385804082|ref|YP_005840482.1| - 0.047 14.0 0.1 0.13 12.6 0.1 1.8 1 0 0 1 1 1 0 Mur ligase family, catalytic domain ApbA PF02558.16 gi|385804082|ref|YP_005840482.1| - 0.051 13.2 0.2 0.1 12.3 0.2 1.6 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|385804082|ref|YP_005840482.1| - 0.12 12.2 0.5 0.3 11.0 0.1 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Aconitase PF00330.20 gi|385804083|ref|YP_005840483.1| - 6.4e-142 473.8 0.0 7.4e-142 473.6 0.0 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|385804084|ref|YP_005840484.1| - 1.3e-19 70.8 0.0 2e-19 70.2 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain GSHPx PF00255.19 gi|385804084|ref|YP_005840484.1| - 0.18 11.4 0.0 0.33 10.5 0.0 1.4 1 0 0 1 1 1 0 Glutathione peroxidase Iso_dh PF00180.20 gi|385804085|ref|YP_005840485.1| - 7e-89 298.4 0.1 7.9e-89 298.2 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PTS-HPr PF00381.19 gi|385804086|ref|YP_005840486.1| - 2.8e-28 98.0 0.0 3e-28 97.9 0.0 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site PEP-utilizers_C PF02896.18 gi|385804087|ref|YP_005840487.1| - 1.3e-97 326.5 0.0 1.9e-97 326.0 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilisers_N PF05524.13 gi|385804087|ref|YP_005840487.1| - 6.7e-25 87.5 0.9 1.4e-24 86.5 0.0 2.0 2 0 0 2 2 2 1 PEP-utilising enzyme, N-terminal PEP-utilizers PF00391.23 gi|385804087|ref|YP_005840487.1| - 2.2e-21 75.4 0.6 7e-21 73.7 0.6 1.9 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain RNA_pol_Rpb4 PF03874.16 gi|385804087|ref|YP_005840487.1| - 0.09 13.1 0.1 3.7 7.9 0.0 2.4 2 0 0 2 2 2 0 RNA polymerase Rpb4 DinB_2 PF12867.7 gi|385804087|ref|YP_005840487.1| - 0.26 11.8 1.8 2.9 8.4 1.8 2.4 1 1 0 1 1 1 0 DinB superfamily F_bP_aldolase PF01116.20 gi|385804088|ref|YP_005840488.1| - 3.2e-75 253.2 0.0 3.6e-75 253.0 0.0 1.0 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-II PEP_hydrolase PF09370.10 gi|385804088|ref|YP_005840488.1| - 0.058 12.6 0.0 0.19 10.9 0.0 1.7 1 1 1 2 2 2 0 Phosphoenolpyruvate hydrolase-like Acetyltransf_10 PF13673.7 gi|385804089|ref|YP_005840489.1| - 2e-13 50.4 0.0 2.4e-13 50.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|385804089|ref|YP_005840489.1| - 7e-12 45.6 0.0 1.1e-11 44.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|385804089|ref|YP_005840489.1| - 5.2e-11 42.8 0.0 7.2e-11 42.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|385804089|ref|YP_005840489.1| - 6.7e-07 29.2 0.0 1.2e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|385804089|ref|YP_005840489.1| - 0.0024 17.9 0.0 0.48 10.5 0.0 2.2 1 1 1 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|385804089|ref|YP_005840489.1| - 0.018 15.2 0.0 0.13 12.4 0.0 1.9 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|385804089|ref|YP_005840489.1| - 0.068 13.3 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase HTH_20 PF12840.7 gi|385804090|ref|YP_005840490.1| - 0.0023 17.9 0.2 0.0042 17.1 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|385804090|ref|YP_005840490.1| - 0.0032 17.3 0.0 0.0069 16.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|385804090|ref|YP_005840490.1| - 0.075 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_IclR PF09339.10 gi|385804090|ref|YP_005840490.1| - 0.086 12.7 0.1 0.15 11.9 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain IF-2B PF01008.17 gi|385804091|ref|YP_005840491.1| - 8.3e-43 146.6 2.5 9.9e-43 146.4 2.5 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF3584 PF12128.8 gi|385804091|ref|YP_005840491.1| - 0.022 12.3 2.5 0.025 12.1 2.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Seryl_tRNA_N PF02403.22 gi|385804091|ref|YP_005840491.1| - 0.12 12.6 0.9 0.25 11.6 0.9 1.6 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain DUF5344 PF17279.2 gi|385804091|ref|YP_005840491.1| - 0.17 12.5 3.5 0.17 12.5 0.7 2.1 2 1 0 2 2 2 0 Family of unknown function (DUF5344) CinA_KH PF18146.1 gi|385804091|ref|YP_005840491.1| - 0.28 11.3 0.1 0.28 11.3 0.1 2.4 2 1 1 3 3 3 0 Damage-inducible protein CinA KH domain CHDCT2 PF08074.11 gi|385804092|ref|YP_005840492.1| - 0.018 15.2 0.4 0.05 13.8 0.0 1.8 1 1 1 2 2 2 0 CHDCT2 (NUC038) domain SpoIIIAH PF12685.7 gi|385804092|ref|YP_005840492.1| - 0.022 14.6 9.4 0.036 13.9 9.4 1.3 1 0 0 1 1 1 0 SpoIIIAH-like protein Neisseria_TspB PF05616.13 gi|385804092|ref|YP_005840492.1| - 0.12 10.9 5.8 0.13 10.7 5.8 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein IQCJ-SCHIP1 PF15157.6 gi|385804092|ref|YP_005840492.1| - 0.18 11.7 2.8 0.22 11.3 2.8 1.2 1 0 0 1 1 1 0 Fusion protein IQCJ-SCHIP1 with IQ-like motif Trypan_PARP PF05887.11 gi|385804092|ref|YP_005840492.1| - 4.3 7.3 7.5 11 6.0 7.5 1.7 1 1 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) AAA PF00004.29 gi|385804094|ref|YP_005840494.1| - 8.5e-99 327.1 0.0 6e-48 162.6 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|385804094|ref|YP_005840494.1| - 3.6e-30 103.5 1.5 3.4e-15 55.6 0.0 2.8 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|385804094|ref|YP_005840494.1| - 2.9e-23 81.9 0.1 1.5e-22 79.6 0.2 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.14 gi|385804094|ref|YP_005840494.1| - 1.4e-18 67.6 0.1 2.4e-08 34.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|385804094|ref|YP_005840494.1| - 6.1e-17 61.8 0.0 3e-08 33.6 0.0 2.8 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|385804094|ref|YP_005840494.1| - 2.5e-16 59.2 0.1 6.2e-16 57.9 0.1 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|385804094|ref|YP_005840494.1| - 4.5e-14 53.2 0.1 5.1e-07 30.2 0.0 3.7 3 1 0 3 3 2 2 AAA ATPase domain AAA_14 PF13173.6 gi|385804094|ref|YP_005840494.1| - 7.2e-11 42.2 0.0 0.0008 19.5 0.0 3.0 3 0 0 3 3 3 2 AAA domain AAA_5 PF07728.14 gi|385804094|ref|YP_005840494.1| - 9.5e-11 41.8 0.6 0.00085 19.3 0.0 4.5 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|385804094|ref|YP_005840494.1| - 1e-10 42.0 0.1 0.0018 18.5 0.0 3.5 2 2 1 3 3 3 2 AAA domain AAA_33 PF13671.6 gi|385804094|ref|YP_005840494.1| - 2.7e-10 40.6 0.0 0.0011 19.1 0.0 2.7 2 1 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|385804094|ref|YP_005840494.1| - 3.6e-10 39.6 0.0 0.00019 20.8 0.0 2.5 2 0 0 2 2 2 2 TIP49 P-loop domain RNA_helicase PF00910.22 gi|385804094|ref|YP_005840494.1| - 6.5e-08 32.9 0.0 0.014 15.8 0.0 2.7 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.21 gi|385804094|ref|YP_005840494.1| - 7.2e-08 32.1 0.2 0.0027 17.1 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|385804094|ref|YP_005840494.1| - 1.4e-07 31.2 0.0 0.02 14.4 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|385804094|ref|YP_005840494.1| - 1.8e-07 31.1 0.0 0.0085 15.8 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|385804094|ref|YP_005840494.1| - 8.5e-07 29.6 0.0 0.073 13.6 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|385804094|ref|YP_005840494.1| - 1.3e-06 28.8 0.0 0.073 13.3 0.0 2.8 3 0 0 3 3 2 2 AAA domain AAA_3 PF07726.11 gi|385804094|ref|YP_005840494.1| - 1.6e-06 28.0 0.0 0.013 15.3 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|385804094|ref|YP_005840494.1| - 3e-06 27.1 0.0 0.065 12.9 0.0 3.0 2 1 1 3 3 3 2 Sigma-54 interaction domain AAA_24 PF13479.6 gi|385804094|ref|YP_005840494.1| - 4.6e-06 26.5 0.0 0.056 13.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|385804094|ref|YP_005840494.1| - 4.7e-06 26.3 0.0 1.9 8.0 0.0 4.2 4 0 0 4 4 4 1 AAA domain ABC_tran PF00005.27 gi|385804094|ref|YP_005840494.1| - 5.1e-06 27.1 0.0 0.094 13.2 0.0 2.7 2 0 0 2 2 2 2 ABC transporter DUF815 PF05673.13 gi|385804094|ref|YP_005840494.1| - 7.7e-06 25.2 0.0 0.017 14.3 0.0 2.7 2 1 0 2 2 2 2 Protein of unknown function (DUF815) TsaE PF02367.17 gi|385804094|ref|YP_005840494.1| - 7.8e-06 25.9 0.0 0.16 11.9 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_11 PF13086.6 gi|385804094|ref|YP_005840494.1| - 2.1e-05 24.5 0.0 0.17 11.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.22 gi|385804094|ref|YP_005840494.1| - 2.5e-05 23.6 0.0 0.32 10.1 0.0 2.9 3 0 0 3 3 3 2 NB-ARC domain PhoH PF02562.16 gi|385804094|ref|YP_005840494.1| - 3.5e-05 23.4 0.1 0.16 11.4 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein AAA_30 PF13604.6 gi|385804094|ref|YP_005840494.1| - 3.6e-05 23.6 0.0 0.25 11.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.9 gi|385804094|ref|YP_005840494.1| - 4.6e-05 22.8 0.0 0.074 12.3 0.0 2.5 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.12 gi|385804094|ref|YP_005840494.1| - 4.7e-05 22.8 0.1 0.32 10.3 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin NACHT PF05729.12 gi|385804094|ref|YP_005840494.1| - 6.4e-05 22.9 0.1 0.37 10.7 0.0 3.3 4 0 0 4 4 3 2 NACHT domain ATPase PF06745.13 gi|385804094|ref|YP_005840494.1| - 7.6e-05 22.2 0.1 1.4 8.3 0.0 3.4 2 1 1 3 3 3 2 KaiC Parvo_NS1 PF01057.17 gi|385804094|ref|YP_005840494.1| - 7.9e-05 21.9 0.0 0.22 10.6 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Vps4_C PF09336.10 gi|385804094|ref|YP_005840494.1| - 0.00038 20.4 0.1 0.13 12.2 0.0 2.9 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain AAA_17 PF13207.6 gi|385804094|ref|YP_005840494.1| - 0.00068 20.1 0.3 2.2 8.7 0.0 3.0 3 0 0 3 3 2 2 AAA domain AAA_19 PF13245.6 gi|385804094|ref|YP_005840494.1| - 0.00082 19.7 0.8 1.7 9.0 0.2 2.9 2 1 1 3 3 2 1 AAA domain Bac_DnaA PF00308.18 gi|385804094|ref|YP_005840494.1| - 0.00094 19.1 0.0 0.58 9.9 0.0 2.6 2 1 0 2 2 2 1 Bacterial dnaA protein Sigma54_activ_2 PF14532.6 gi|385804094|ref|YP_005840494.1| - 0.00095 19.3 0.0 2.4 8.3 0.0 2.9 3 0 0 3 3 2 1 Sigma-54 interaction domain ATPase_2 PF01637.18 gi|385804094|ref|YP_005840494.1| - 0.001 19.0 0.0 0.56 10.1 0.0 2.9 2 2 0 2 2 2 1 ATPase domain predominantly from Archaea NTPase_1 PF03266.15 gi|385804094|ref|YP_005840494.1| - 0.0012 18.8 1.2 2.2 8.2 0.0 3.3 3 1 1 4 4 2 2 NTPase TniB PF05621.11 gi|385804094|ref|YP_005840494.1| - 0.0022 17.4 0.1 3 7.2 0.0 3.4 3 1 1 4 4 4 1 Bacterial TniB protein AFG1_ATPase PF03969.16 gi|385804094|ref|YP_005840494.1| - 0.0044 15.9 0.0 1.6 7.5 0.0 2.3 2 0 0 2 2 2 1 AFG1-like ATPase Guanylate_kin PF00625.21 gi|385804094|ref|YP_005840494.1| - 0.006 16.3 0.3 11 5.6 0.0 3.9 2 2 2 4 4 4 0 Guanylate kinase ResIII PF04851.15 gi|385804094|ref|YP_005840494.1| - 0.0061 16.6 0.0 1.9 8.5 0.0 2.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit T2SSE PF00437.20 gi|385804094|ref|YP_005840494.1| - 0.011 14.8 0.0 2.9 6.9 0.0 2.5 2 0 0 2 2 2 0 Type II/IV secretion system protein Cytidylate_kin PF02224.18 gi|385804094|ref|YP_005840494.1| - 0.021 14.6 0.1 4.9 6.8 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase ATP-synt_ab PF00006.25 gi|385804094|ref|YP_005840494.1| - 0.027 14.1 0.0 3.2 7.4 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain SKI PF01202.22 gi|385804094|ref|YP_005840494.1| - 0.033 14.3 0.1 11 6.1 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase Rad17 PF03215.15 gi|385804094|ref|YP_005840494.1| - 0.049 13.6 0.0 13 5.7 0.0 2.4 2 0 0 2 2 2 0 Rad17 P-loop domain CPT PF07931.12 gi|385804094|ref|YP_005840494.1| - 0.052 13.4 0.0 4.1 7.2 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Torsin PF06309.11 gi|385804094|ref|YP_005840494.1| - 0.056 13.6 0.0 3.4 7.8 0.0 2.5 2 0 0 2 2 2 0 Torsin Hydin_ADK PF17213.3 gi|385804094|ref|YP_005840494.1| - 0.068 13.5 0.3 3.2 8.0 0.1 2.6 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain AAA_29 PF13555.6 gi|385804094|ref|YP_005840494.1| - 0.071 12.9 0.0 14 5.5 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain MCM PF00493.23 gi|385804094|ref|YP_005840494.1| - 0.094 11.8 0.0 2.4 7.2 0.0 2.2 2 0 0 2 2 2 0 MCM P-loop domain Viral_helicase1 PF01443.18 gi|385804094|ref|YP_005840494.1| - 0.12 12.1 0.0 9.4 5.9 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AhpC-TSA PF00578.21 gi|385804095|ref|YP_005840495.1| - 1.4e-32 112.2 0.0 1.7e-32 112.0 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|385804095|ref|YP_005840495.1| - 5.1e-20 71.7 0.0 6.2e-20 71.4 0.0 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|385804095|ref|YP_005840495.1| - 0.011 15.6 0.1 0.016 15.2 0.1 1.3 1 0 0 1 1 1 0 SCO1/SenC DUF899 PF05988.12 gi|385804095|ref|YP_005840495.1| - 0.068 12.7 0.0 0.075 12.6 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) DNA_primase_S PF01896.19 gi|385804097|ref|YP_005840497.1| - 4.5e-25 88.7 0.0 6.6e-25 88.2 0.0 1.3 1 0 0 1 1 1 1 DNA primase small subunit Histidinol_dh PF00815.20 gi|385804098|ref|YP_005840498.1| - 3.2e-151 504.0 8.2 3.8e-151 503.7 8.2 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase Fe-S_biosyn PF01521.20 gi|385804099|ref|YP_005840499.1| - 1.5e-18 67.0 0.0 1.8e-18 66.8 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis 5_nucleotid_C PF02872.18 gi|385804101|ref|YP_005840501.1| - 7.3e-29 101.0 0.0 1.7e-28 99.9 0.0 1.6 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.28 gi|385804101|ref|YP_005840501.1| - 0.0001 22.8 0.0 0.00019 22.0 0.0 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|385804101|ref|YP_005840501.1| - 0.082 13.1 5.0 0.66 10.1 2.8 3.1 1 1 1 2 2 2 0 Calcineurin-like phosphoesterase superfamily domain Usp PF00582.26 gi|385804102|ref|YP_005840502.1| - 9.7e-09 35.9 1.7 0.00023 21.7 0.4 2.1 1 1 1 2 2 2 2 Universal stress protein family MS_channel PF00924.18 gi|385804103|ref|YP_005840503.1| - 1.8e-36 125.6 0.1 2.6e-36 125.1 0.1 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel IncE PF17627.2 gi|385804103|ref|YP_005840503.1| - 0.16 12.0 1.9 0.31 11.1 1.9 1.5 1 0 0 1 1 1 0 Inclusion membrane protein E Colicin_V PF02674.16 gi|385804103|ref|YP_005840503.1| - 0.31 11.0 9.7 0.57 10.1 9.7 1.3 1 0 0 1 1 1 0 Colicin V production protein DUF4381 PF14316.6 gi|385804103|ref|YP_005840503.1| - 0.53 10.5 2.8 1 9.6 2.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) Chromate_transp PF02417.15 gi|385804103|ref|YP_005840503.1| - 3.4 7.8 10.2 5.2 7.2 10.2 1.2 1 0 0 1 1 1 0 Chromate transporter TM_helix PF05552.12 gi|385804103|ref|YP_005840503.1| - 7.2 6.7 9.7 0.28 11.2 3.4 1.8 2 0 0 2 2 2 0 Conserved TM helix Regulator_TrmB PF11495.8 gi|385804104|ref|YP_005840504.1| - 9e-73 244.3 1.1 1.3e-72 243.8 0.7 1.4 2 0 0 2 2 2 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|385804104|ref|YP_005840504.1| - 7.4e-21 73.8 0.0 1.5e-20 72.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|385804104|ref|YP_005840504.1| - 1.8e-06 27.7 0.1 5.4e-06 26.2 0.1 1.8 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|385804104|ref|YP_005840504.1| - 1.5e-05 25.0 0.1 4e-05 23.6 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|385804104|ref|YP_005840504.1| - 7.1e-05 22.5 0.1 0.00016 21.4 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|385804104|ref|YP_005840504.1| - 0.0025 17.3 0.0 0.011 15.3 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|385804104|ref|YP_005840504.1| - 0.0063 16.8 0.0 0.016 15.6 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_5 PF01022.20 gi|385804104|ref|YP_005840504.1| - 0.012 15.5 0.0 0.031 14.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GCR1_C PF12550.8 gi|385804104|ref|YP_005840504.1| - 0.024 15.0 0.0 0.065 13.6 0.0 1.7 1 0 0 1 1 1 0 Transcriptional activator of glycolytic enzymes DUF2250 PF10007.9 gi|385804104|ref|YP_005840504.1| - 0.028 14.5 0.0 0.059 13.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_37 PF13744.6 gi|385804104|ref|YP_005840504.1| - 0.045 13.7 0.1 0.13 12.3 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_CodY PF08222.11 gi|385804104|ref|YP_005840504.1| - 0.074 12.6 0.0 0.24 11.0 0.0 1.9 1 0 0 1 1 1 0 CodY helix-turn-helix domain Sigma70_r4 PF04545.16 gi|385804104|ref|YP_005840504.1| - 0.08 12.5 0.1 3.3 7.3 0.0 2.9 2 1 0 2 2 2 0 Sigma-70, region 4 AAA PF00004.29 gi|385804106|ref|YP_005840506.1| - 1.3e-11 45.1 0.0 4.1e-11 43.4 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|385804106|ref|YP_005840506.1| - 1.3e-05 25.0 0.1 8.4e-05 22.4 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein RuvB_N PF05496.12 gi|385804106|ref|YP_005840506.1| - 5.8e-05 22.9 0.0 0.00012 21.8 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|385804106|ref|YP_005840506.1| - 0.0001 22.6 0.1 0.0068 16.7 0.1 2.6 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|385804106|ref|YP_005840506.1| - 0.00021 21.3 0.1 0.0059 16.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|385804106|ref|YP_005840506.1| - 0.001 19.5 0.8 0.0096 16.3 0.8 2.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|385804106|ref|YP_005840506.1| - 0.0011 19.2 0.3 0.0029 17.9 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.6 gi|385804106|ref|YP_005840506.1| - 0.0013 18.9 0.4 0.008 16.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_assoc_2 PF16193.5 gi|385804106|ref|YP_005840506.1| - 0.0019 18.5 1.0 0.0085 16.4 0.2 2.5 2 0 0 2 2 2 1 AAA C-terminal domain NACHT PF05729.12 gi|385804106|ref|YP_005840506.1| - 0.0024 17.8 0.0 0.2 11.5 0.0 2.3 2 0 0 2 2 2 1 NACHT domain AAA_18 PF13238.6 gi|385804106|ref|YP_005840506.1| - 0.0069 16.9 0.0 0.04 14.5 0.0 2.4 1 1 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.18 gi|385804106|ref|YP_005840506.1| - 0.0097 15.7 0.0 0.02 14.7 0.0 1.5 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase RNA_helicase PF00910.22 gi|385804106|ref|YP_005840506.1| - 0.03 14.7 0.0 0.072 13.5 0.0 1.7 1 0 0 1 1 1 0 RNA helicase RsgA_GTPase PF03193.16 gi|385804106|ref|YP_005840506.1| - 0.05 13.5 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase HEAT_2 PF13646.6 gi|385804106|ref|YP_005840506.1| - 0.13 12.6 1.2 0.54 10.7 0.1 2.6 2 0 0 2 2 2 0 HEAT repeats AAA_3 PF07726.11 gi|385804106|ref|YP_005840506.1| - 0.15 11.9 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|385804106|ref|YP_005840506.1| - 0.18 11.7 0.0 10 6.0 0.0 2.3 1 1 1 2 2 2 0 Rad17 P-loop domain AAA_7 PF12775.7 gi|385804106|ref|YP_005840506.1| - 0.22 11.0 0.0 0.37 10.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Hydin_ADK PF17213.3 gi|385804106|ref|YP_005840506.1| - 0.27 11.5 0.1 0.27 11.5 0.1 2.4 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain ABC_tran PF00005.27 gi|385804107|ref|YP_005840507.1| - 1.4e-36 126.1 0.1 1.7e-36 125.7 0.1 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385804107|ref|YP_005840507.1| - 1.8e-11 44.4 0.0 2.6e-05 24.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385804107|ref|YP_005840507.1| - 1.6e-10 40.8 0.2 1.1e-09 38.1 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|385804107|ref|YP_005840507.1| - 3.8e-05 23.3 0.0 7.1e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|385804107|ref|YP_005840507.1| - 8.4e-05 22.4 0.0 0.00028 20.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|385804107|ref|YP_005840507.1| - 9e-05 22.9 0.1 0.00014 22.3 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|385804107|ref|YP_005840507.1| - 0.00032 21.0 0.1 0.0011 19.2 0.0 2.1 1 1 1 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|385804107|ref|YP_005840507.1| - 0.00049 20.0 0.0 0.00089 19.2 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase ABC_ATPase PF09818.9 gi|385804107|ref|YP_005840507.1| - 0.00054 18.9 0.1 1.9 7.2 0.0 3.0 3 0 0 3 3 3 2 Predicted ATPase of the ABC class AAA_23 PF13476.6 gi|385804107|ref|YP_005840507.1| - 0.001 19.6 0.4 0.0022 18.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|385804107|ref|YP_005840507.1| - 0.0014 18.6 0.0 0.0034 17.3 0.0 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_15 PF13175.6 gi|385804107|ref|YP_005840507.1| - 0.0023 17.7 0.0 0.0038 17.0 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|385804107|ref|YP_005840507.1| - 0.013 15.9 0.2 0.71 10.3 0.1 2.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|385804107|ref|YP_005840507.1| - 0.02 14.9 0.0 2.4 8.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|385804107|ref|YP_005840507.1| - 0.022 14.9 0.1 0.03 14.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|385804107|ref|YP_005840507.1| - 0.024 13.8 0.0 0.23 10.6 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain IstB_IS21 PF01695.17 gi|385804107|ref|YP_005840507.1| - 0.045 13.5 0.0 0.12 12.1 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein TniB PF05621.11 gi|385804107|ref|YP_005840507.1| - 0.047 13.1 0.0 5.1 6.5 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein AAA_14 PF13173.6 gi|385804107|ref|YP_005840507.1| - 0.05 13.6 0.1 0.31 11.1 0.0 2.4 2 1 0 2 2 1 0 AAA domain AAA_24 PF13479.6 gi|385804107|ref|YP_005840507.1| - 0.055 13.2 0.0 0.14 11.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain DUF3987 PF13148.6 gi|385804107|ref|YP_005840507.1| - 0.057 12.4 0.0 0.16 11.0 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) AAA_27 PF13514.6 gi|385804107|ref|YP_005840507.1| - 0.058 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|385804107|ref|YP_005840507.1| - 0.059 12.2 0.0 0.18 10.5 0.0 1.7 2 0 0 2 2 2 0 Adenovirus IVa2 protein NACHT PF05729.12 gi|385804107|ref|YP_005840507.1| - 0.065 13.1 0.0 0.17 11.8 0.0 1.7 2 0 0 2 2 1 0 NACHT domain cobW PF02492.19 gi|385804107|ref|YP_005840507.1| - 0.068 12.7 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.6 gi|385804107|ref|YP_005840507.1| - 0.07 13.7 0.0 0.13 12.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|385804107|ref|YP_005840507.1| - 0.07 12.2 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein NTPase_1 PF03266.15 gi|385804107|ref|YP_005840507.1| - 0.074 13.0 0.0 0.43 10.5 0.0 2.2 1 1 0 1 1 1 0 NTPase SbcCD_C PF13558.6 gi|385804107|ref|YP_005840507.1| - 0.075 13.3 0.2 1.1 9.5 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 gi|385804107|ref|YP_005840507.1| - 0.14 11.7 0.0 0.37 10.3 0.0 1.7 2 0 0 2 2 1 0 AAA domain BPD_transp_1 PF00528.22 gi|385804108|ref|YP_005840508.1| - 2.1e-17 63.5 7.1 2.1e-17 63.5 7.1 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component MS_channel PF00924.18 gi|385804108|ref|YP_005840508.1| - 0.66 9.5 8.7 1.1 8.8 8.7 1.3 1 0 0 1 1 1 0 Mechanosensitive ion channel SBP_bac_3 PF00497.20 gi|385804109|ref|YP_005840509.1| - 2.1e-66 223.6 0.6 2.6e-66 223.3 0.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|385804109|ref|YP_005840509.1| - 6.7e-07 29.5 0.2 8e-06 26.0 0.2 2.2 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site TAT_signal PF10518.9 gi|385804109|ref|YP_005840509.1| - 0.0014 18.4 0.1 0.0026 17.5 0.1 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence NMT1 PF09084.11 gi|385804109|ref|YP_005840509.1| - 0.0017 18.3 0.0 0.0026 17.7 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|385804109|ref|YP_005840509.1| - 0.018 14.7 0.1 0.28 10.8 0.1 2.9 1 1 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein COX15-CtaA PF02628.15 gi|385804110|ref|YP_005840510.1| - 6.1e-11 42.0 29.0 1.7e-10 40.5 10.9 3.1 1 1 1 3 3 3 3 Cytochrome oxidase assembly protein Peptidase_M24 PF00557.24 gi|385804111|ref|YP_005840511.1| - 8.9e-08 32.1 1.1 1.5e-07 31.4 1.1 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|385804111|ref|YP_005840511.1| - 0.00014 22.5 0.1 0.00057 20.5 0.0 2.0 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain DUF4129 PF13559.6 gi|385804111|ref|YP_005840511.1| - 0.3 11.4 3.1 17 5.8 1.3 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4129) PTA_PTB PF01515.19 gi|385804112|ref|YP_005840512.1| - 3.3e-96 322.4 0.0 4.7e-96 321.9 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 gi|385804112|ref|YP_005840512.1| - 1.2e-28 100.1 0.0 4.1e-26 91.9 0.0 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|385804112|ref|YP_005840512.1| - 5.8e-21 74.9 0.9 2e-20 73.2 0.9 1.9 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain RVT_3 PF13456.6 gi|385804113|ref|YP_005840513.1| - 0.00027 20.7 0.1 0.00053 19.8 0.1 1.4 1 0 0 1 1 1 1 Reverse transcriptase-like FAM60A PF15396.6 gi|385804113|ref|YP_005840513.1| - 0.013 15.5 0.3 0.019 15.0 0.3 1.2 1 0 0 1 1 1 0 Protein Family FAM60A RNase_H PF00075.24 gi|385804113|ref|YP_005840513.1| - 0.019 15.1 0.0 0.031 14.5 0.0 1.3 1 0 0 1 1 1 0 RNase H EamA PF00892.20 gi|385804114|ref|YP_005840514.1| - 5.5e-38 130.2 40.4 5.9e-20 71.8 19.0 2.0 2 0 0 2 2 2 2 EamA-like transporter family SLC35F PF06027.12 gi|385804114|ref|YP_005840514.1| - 0.01 15.4 10.1 0.016 14.8 10.1 1.3 1 0 0 1 1 1 1 Solute carrier family 35 AAA_18 PF13238.6 gi|385804116|ref|YP_005840516.1| - 3.2e-22 79.5 0.0 4.2e-22 79.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 gi|385804116|ref|YP_005840516.1| - 2.8e-18 66.7 0.2 3.6e-17 63.1 0.2 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_17 PF13207.6 gi|385804116|ref|YP_005840516.1| - 1.7e-10 41.5 0.0 3.6e-10 40.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|385804116|ref|YP_005840516.1| - 1.7e-07 31.2 0.3 0.0011 18.8 0.1 2.2 1 1 1 2 2 2 2 Cytidylate kinase AAA_33 PF13671.6 gi|385804116|ref|YP_005840516.1| - 3.3e-05 24.1 0.0 6.8e-05 23.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|385804116|ref|YP_005840516.1| - 9.4e-05 22.7 1.0 0.00057 20.2 0.0 2.0 1 1 0 2 2 2 1 AAA domain ADK PF00406.22 gi|385804116|ref|YP_005840516.1| - 0.00045 20.4 0.0 0.0016 18.6 0.0 1.8 2 0 0 2 2 2 1 Adenylate kinase AAA PF00004.29 gi|385804116|ref|YP_005840516.1| - 0.00093 19.6 0.0 0.0026 18.2 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|385804116|ref|YP_005840516.1| - 0.013 15.9 0.0 0.021 15.2 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain SKI PF01202.22 gi|385804116|ref|YP_005840516.1| - 0.014 15.6 0.4 0.16 12.1 0.4 2.0 1 1 0 1 1 1 0 Shikimate kinase RHH_4 PF13467.6 gi|385804116|ref|YP_005840516.1| - 0.042 13.7 0.1 0.096 12.6 0.1 1.7 1 0 0 1 1 1 0 Ribbon-helix-helix domain DUF1684 PF07920.11 gi|385804117|ref|YP_005840517.1| - 1.9e-53 180.5 0.4 3.8e-53 179.5 0.4 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1684) Ribosomal_S10 PF00338.22 gi|385804119|ref|YP_005840519.1| - 9.8e-09 35.3 0.0 1.2e-08 35.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e AbiTii PF18864.1 gi|385804119|ref|YP_005840519.1| - 0.13 12.3 0.0 0.16 12.1 0.0 1.1 1 0 0 1 1 1 0 AbiTii Peptidase_M20 PF01546.28 gi|385804120|ref|YP_005840520.1| - 4.9e-17 62.3 3.9 1.2e-10 41.5 0.7 2.3 2 0 0 2 2 2 2 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|385804120|ref|YP_005840520.1| - 1.8e-13 50.3 0.8 1.8e-13 50.3 0.8 2.1 2 0 0 2 2 2 1 Peptidase dimerisation domain DUF3040 PF11239.8 gi|385804121|ref|YP_005840521.1| - 1.1 9.6 4.8 1.2 9.4 4.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) PhoU PF01895.19 gi|385804122|ref|YP_005840522.1| - 9.2e-14 51.7 6.5 3.6e-13 49.8 0.1 2.9 1 1 1 2 2 2 1 PhoU domain MazE_antitoxin PF04014.18 gi|385804122|ref|YP_005840522.1| - 1.1e-06 28.4 0.0 2.1e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin NAD_kinase PF01513.21 gi|385804123|ref|YP_005840523.1| - 3e-46 157.9 0.4 3.5e-46 157.7 0.4 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|385804123|ref|YP_005840523.1| - 7.7e-08 32.0 0.8 1.3e-06 28.1 0.1 2.5 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain PFK PF00365.20 gi|385804123|ref|YP_005840523.1| - 0.045 13.1 0.0 0.078 12.3 0.0 1.3 1 0 0 1 1 1 0 Phosphofructokinase DeoRC PF00455.22 gi|385804123|ref|YP_005840523.1| - 0.15 12.0 0.7 19 5.2 0.2 2.2 2 0 0 2 2 2 0 DeoR C terminal sensor domain zf-ribbon_3 PF13248.6 gi|385804124|ref|YP_005840524.1| - 0.0035 16.7 0.7 2.1 7.9 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|385804124|ref|YP_005840524.1| - 0.014 15.4 0.6 0.03 14.4 0.6 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-ACC PF17848.1 gi|385804124|ref|YP_005840524.1| - 0.016 15.3 0.5 1.3 9.1 0.0 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Nudix_N_2 PF14803.6 gi|385804124|ref|YP_005840524.1| - 0.023 14.6 1.0 0.1 12.5 1.0 1.9 1 1 0 1 1 1 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.11 gi|385804124|ref|YP_005840524.1| - 0.045 13.7 0.6 1.6 8.7 0.1 2.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|385804124|ref|YP_005840524.1| - 0.05 13.3 2.5 0.17 11.6 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.9 gi|385804124|ref|YP_005840524.1| - 0.19 11.8 0.3 0.19 11.8 0.3 2.2 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.10 gi|385804124|ref|YP_005840524.1| - 0.33 11.1 3.6 1 9.5 3.4 1.8 1 1 0 1 1 1 0 Zinc ribbon domain HisKA_4TM PF16926.5 gi|385804125|ref|YP_005840525.1| - 1.2e-06 28.2 0.1 3.7e-06 26.6 0.1 1.8 2 0 0 2 2 2 1 Archaeal 4TM region of histidine kinase PAS_9 PF13426.7 gi|385804125|ref|YP_005840525.1| - 0.00018 21.7 0.0 0.00047 20.4 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|385804125|ref|YP_005840525.1| - 0.00023 21.4 0.0 0.00057 20.1 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|385804125|ref|YP_005840525.1| - 0.0011 18.9 0.0 0.0039 17.2 0.0 1.9 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|385804125|ref|YP_005840525.1| - 0.014 15.4 0.0 0.034 14.2 0.0 1.6 1 0 0 1 1 1 0 PAS domain HATPase_c PF02518.26 gi|385804125|ref|YP_005840525.1| - 0.049 14.1 0.8 0.17 12.4 0.3 2.3 2 1 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PT-TG PF14449.6 gi|385804125|ref|YP_005840525.1| - 0.16 11.8 0.1 0.3 11.0 0.1 1.4 1 0 0 1 1 1 0 Pre-toxin TG BAT PF15915.5 gi|385804126|ref|YP_005840526.1| - 1.1e-36 126.0 3.8 4.6e-36 124.0 3.8 2.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|385804126|ref|YP_005840526.1| - 1e-19 70.1 0.0 2.3e-19 68.9 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain Response_reg PF00072.24 gi|385804126|ref|YP_005840526.1| - 7.2e-17 61.6 1.3 2.1e-16 60.1 1.3 1.8 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.10 gi|385804126|ref|YP_005840526.1| - 6.6e-09 36.0 2.6 6.6e-09 36.0 2.6 2.5 2 1 0 2 2 2 1 HalX domain Baculo_PEP_C PF04513.12 gi|385804126|ref|YP_005840526.1| - 1.9 8.5 7.7 14 5.7 2.1 2.9 2 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Response_reg PF00072.24 gi|385804127|ref|YP_005840527.1| - 2.1e-13 50.4 0.3 8.9e-13 48.4 0.3 1.8 1 1 0 1 1 1 1 Response regulator receiver domain Rpr2 PF04032.16 gi|385804128|ref|YP_005840528.1| - 0.017 15.4 1.6 0.021 15.1 1.6 1.1 1 0 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain CpXC PF14353.6 gi|385804128|ref|YP_005840528.1| - 0.023 14.8 1.0 0.028 14.5 1.0 1.1 1 0 0 1 1 1 0 CpXC protein DZR PF12773.7 gi|385804128|ref|YP_005840528.1| - 0.039 14.0 2.2 0.063 13.3 2.2 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-dskA_traR PF01258.17 gi|385804128|ref|YP_005840528.1| - 0.05 13.6 1.3 0.28 11.2 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zinc_ribbon_15 PF17032.5 gi|385804128|ref|YP_005840528.1| - 0.058 14.1 2.7 0.11 13.3 2.7 1.4 1 1 0 1 1 1 0 zinc-ribbon family NOB1_Zn_bind PF08772.11 gi|385804128|ref|YP_005840528.1| - 0.067 13.4 1.0 1.8 8.8 0.1 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like CxC7 PF18866.1 gi|385804128|ref|YP_005840528.1| - 0.069 13.3 0.1 0.12 12.5 0.1 1.4 1 0 0 1 1 1 0 CxC7 like cysteine cluster associated with KDZ transposases DEAD_assoc PF08494.11 gi|385804129|ref|YP_005840529.1| - 3.7e-33 114.9 0.4 1e-32 113.5 0.4 1.8 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|385804129|ref|YP_005840529.1| - 5.7e-29 101.1 0.0 4.7e-27 94.9 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|385804129|ref|YP_005840529.1| - 1.6e-21 76.7 0.0 4.1e-20 72.2 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|385804129|ref|YP_005840529.1| - 2.7e-10 40.5 0.0 6.3e-10 39.3 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|385804129|ref|YP_005840529.1| - 6.4e-05 23.3 0.1 0.0028 18.0 0.0 2.8 2 1 0 2 2 2 1 AAA domain SNF2_N PF00176.23 gi|385804129|ref|YP_005840529.1| - 0.066 11.9 0.0 0.15 10.7 0.0 1.5 2 0 0 2 2 2 0 SNF2 family N-terminal domain AAA_22 PF13401.6 gi|385804129|ref|YP_005840529.1| - 0.11 12.8 0.1 2.2 8.6 0.1 2.8 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|385804130|ref|YP_005840530.1| - 8.2e-94 311.0 0.0 3.9e-46 156.7 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|385804130|ref|YP_005840530.1| - 5.7e-23 80.5 4.8 2.4e-12 46.4 0.7 2.7 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|385804130|ref|YP_005840530.1| - 2e-22 79.2 0.9 4.5e-22 78.0 0.2 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_16 PF13191.6 gi|385804130|ref|YP_005840530.1| - 2.2e-13 50.9 0.0 3.9e-05 24.1 0.0 3.6 2 1 0 2 2 2 2 AAA ATPase domain RuvB_N PF05496.12 gi|385804130|ref|YP_005840530.1| - 2.4e-13 50.2 0.1 9.6e-06 25.4 0.0 3.3 4 0 0 4 4 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|385804130|ref|YP_005840530.1| - 1.9e-12 47.7 0.0 1.8e-06 28.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_33 PF13671.6 gi|385804130|ref|YP_005840530.1| - 1.3e-09 38.4 0.0 0.00068 19.8 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|385804130|ref|YP_005840530.1| - 2.2e-09 37.4 0.1 0.0026 17.8 0.0 3.6 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|385804130|ref|YP_005840530.1| - 4.5e-09 36.0 0.0 0.00031 20.1 0.0 2.3 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|385804130|ref|YP_005840530.1| - 7.6e-09 35.7 0.0 0.0019 18.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|385804130|ref|YP_005840530.1| - 1.7e-08 34.8 0.3 0.012 15.9 0.0 3.6 2 2 1 3 3 3 2 AAA domain AAA_28 PF13521.6 gi|385804130|ref|YP_005840530.1| - 9.4e-07 29.2 0.0 0.019 15.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain CDC48_2 PF02933.17 gi|385804130|ref|YP_005840530.1| - 1e-06 28.4 2.1 1.4e-06 28.0 0.2 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 IstB_IS21 PF01695.17 gi|385804130|ref|YP_005840530.1| - 1.5e-06 28.0 0.0 0.072 12.8 0.0 2.7 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|385804130|ref|YP_005840530.1| - 1.7e-06 28.6 0.0 0.082 13.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|385804130|ref|YP_005840530.1| - 3.4e-06 26.6 0.2 0.08 12.3 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|385804130|ref|YP_005840530.1| - 4.6e-06 27.0 0.0 0.076 13.4 0.0 2.8 3 0 0 3 3 2 2 RNA helicase AAA_3 PF07726.11 gi|385804130|ref|YP_005840530.1| - 8.2e-06 25.7 0.0 0.064 13.1 0.0 2.7 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|385804130|ref|YP_005840530.1| - 8.7e-06 25.8 0.0 0.11 12.5 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|385804130|ref|YP_005840530.1| - 1.2e-05 25.9 0.0 0.15 12.6 0.0 2.7 2 0 0 2 2 2 2 ABC transporter AAA_11 PF13086.6 gi|385804130|ref|YP_005840530.1| - 3.3e-05 23.8 0.0 0.27 11.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|385804130|ref|YP_005840530.1| - 3.7e-05 23.5 0.0 0.32 10.7 0.0 3.5 4 1 0 4 4 4 2 Sigma-54 interaction domain AAA_7 PF12775.7 gi|385804130|ref|YP_005840530.1| - 4.8e-05 22.9 0.0 0.023 14.2 0.0 2.4 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_30 PF13604.6 gi|385804130|ref|YP_005840530.1| - 0.00015 21.5 1.0 0.36 10.5 0.0 3.1 3 0 0 3 3 2 2 AAA domain AAA_24 PF13479.6 gi|385804130|ref|YP_005840530.1| - 0.00016 21.5 0.0 0.47 10.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain Parvo_NS1 PF01057.17 gi|385804130|ref|YP_005840530.1| - 0.00016 20.9 0.0 0.42 9.7 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_17 PF13207.6 gi|385804130|ref|YP_005840530.1| - 0.00021 21.7 0.0 0.49 10.8 0.0 2.9 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|385804130|ref|YP_005840530.1| - 0.0003 20.1 0.0 0.21 10.8 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.12 gi|385804130|ref|YP_005840530.1| - 0.00038 19.8 0.0 0.34 10.1 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin PhoH PF02562.16 gi|385804130|ref|YP_005840530.1| - 0.00046 19.7 0.5 1.1 8.7 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein AAA_19 PF13245.6 gi|385804130|ref|YP_005840530.1| - 0.00047 20.5 0.1 0.88 9.9 0.0 2.8 2 1 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|385804130|ref|YP_005840530.1| - 0.00075 19.5 0.1 2.3 8.1 0.0 3.1 3 0 0 3 3 3 1 NACHT domain DUF815 PF05673.13 gi|385804130|ref|YP_005840530.1| - 0.00095 18.4 0.0 1.6 7.8 0.0 2.9 3 0 0 3 3 3 2 Protein of unknown function (DUF815) NB-ARC PF00931.22 gi|385804130|ref|YP_005840530.1| - 0.002 17.4 0.0 0.4 9.8 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain ATPase PF06745.13 gi|385804130|ref|YP_005840530.1| - 0.0023 17.3 0.1 2 7.7 0.0 3.1 3 0 0 3 3 3 1 KaiC Cytidylate_kin PF02224.18 gi|385804130|ref|YP_005840530.1| - 0.0055 16.5 0.1 0.77 9.4 0.0 2.6 2 0 0 2 2 2 1 Cytidylate kinase AAA_25 PF13481.6 gi|385804130|ref|YP_005840530.1| - 0.0081 15.8 6.9 2.1 7.8 1.3 4.0 2 2 0 3 3 3 1 AAA domain CPT PF07931.12 gi|385804130|ref|YP_005840530.1| - 0.0085 16.0 0.0 0.32 10.8 0.0 2.5 2 0 0 2 2 2 1 Chloramphenicol phosphotransferase-like protein Sigma54_activ_2 PF14532.6 gi|385804130|ref|YP_005840530.1| - 0.0086 16.2 0.0 5.1 7.2 0.0 2.8 3 0 0 3 3 2 0 Sigma-54 interaction domain NTPase_1 PF03266.15 gi|385804130|ref|YP_005840530.1| - 0.018 14.9 0.0 2.5 8.0 0.0 2.8 2 0 0 2 2 2 0 NTPase Viral_helicase1 PF01443.18 gi|385804130|ref|YP_005840530.1| - 0.019 14.7 0.0 0.98 9.1 0.0 2.8 3 0 0 3 3 3 0 Viral (Superfamily 1) RNA helicase Cytidylate_kin2 PF13189.6 gi|385804130|ref|YP_005840530.1| - 0.025 14.7 0.0 0.91 9.6 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase-like family SKI PF01202.22 gi|385804130|ref|YP_005840530.1| - 0.032 14.4 0.0 6.8 6.8 0.0 2.7 2 0 0 2 2 2 0 Shikimate kinase Rad17 PF03215.15 gi|385804130|ref|YP_005840530.1| - 0.038 13.9 0.0 4.6 7.1 0.0 2.3 2 0 0 2 2 2 0 Rad17 P-loop domain ATPase_2 PF01637.18 gi|385804130|ref|YP_005840530.1| - 0.077 12.9 0.0 8.6 6.2 0.0 2.9 2 1 1 3 3 3 0 ATPase domain predominantly from Archaea Torsin PF06309.11 gi|385804130|ref|YP_005840530.1| - 0.099 12.7 0.0 2.4 8.3 0.0 2.4 2 0 0 2 2 2 0 Torsin Bac_DnaA PF00308.18 gi|385804130|ref|YP_005840530.1| - 0.14 12.0 0.0 23 4.7 0.0 2.5 2 0 0 2 2 2 0 Bacterial dnaA protein ResIII PF04851.15 gi|385804130|ref|YP_005840530.1| - 0.15 12.1 0.0 10 6.1 0.0 2.7 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit TniB PF05621.11 gi|385804130|ref|YP_005840530.1| - 0.2 11.0 0.0 18 4.7 0.0 3.1 4 0 0 4 4 4 0 Bacterial TniB protein Hydin_ADK PF17213.3 gi|385804130|ref|YP_005840530.1| - 0.9 9.8 3.4 1.4 9.2 0.0 2.7 3 0 0 3 3 3 0 Hydin Adenylate kinase-like domain Peripla_BP_6 PF13458.6 gi|385804131|ref|YP_005840531.1| - 3.8e-46 158.3 5.3 6.3e-46 157.6 5.3 1.3 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|385804131|ref|YP_005840531.1| - 1.1e-26 93.8 0.2 1.3e-26 93.6 0.2 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|385804131|ref|YP_005840531.1| - 2.3e-10 40.0 2.7 3.2e-10 39.5 0.0 2.0 2 0 0 2 2 2 1 Periplasmic binding protein domain TAT_signal PF10518.9 gi|385804131|ref|YP_005840531.1| - 0.034 14.0 3.0 0.11 12.4 3.0 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_2 PF02653.16 gi|385804132|ref|YP_005840532.1| - 3e-36 125.0 42.1 3.6e-36 124.7 42.1 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component EMC3_TMCO1 PF01956.16 gi|385804132|ref|YP_005840532.1| - 0.34 10.6 3.3 0.73 9.6 0.8 2.5 1 1 1 2 2 2 0 Integral membrane protein EMC3/TMCO1-like BPD_transp_2 PF02653.16 gi|385804133|ref|YP_005840533.1| - 4.5e-48 163.7 32.1 5.4e-48 163.5 32.1 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component HCV_NS4a PF01006.20 gi|385804133|ref|YP_005840533.1| - 0.022 14.5 4.8 0.056 13.2 2.5 2.5 2 0 0 2 2 2 0 Hepatitis C virus non-structural protein NS4a DUF4834 PF16118.5 gi|385804133|ref|YP_005840533.1| - 5.7 8.0 4.7 1.8 9.6 0.2 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4834) ABC_tran PF00005.27 gi|385804134|ref|YP_005840534.1| - 2.1e-34 119.0 0.0 2.8e-34 118.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385804134|ref|YP_005840534.1| - 9.6e-17 61.7 0.9 1.1e-08 35.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|385804134|ref|YP_005840534.1| - 1.5e-07 31.2 0.0 2.7e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 gi|385804134|ref|YP_005840534.1| - 1.2e-06 29.1 0.1 1.8e-06 28.6 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|385804134|ref|YP_005840534.1| - 4.8e-05 23.0 0.2 9.4e-05 22.1 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|385804134|ref|YP_005840534.1| - 0.00066 19.2 1.6 0.025 14.0 1.6 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|385804134|ref|YP_005840534.1| - 0.0019 18.1 0.1 0.0037 17.2 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|385804134|ref|YP_005840534.1| - 0.0025 17.6 0.5 0.11 12.2 0.1 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_27 PF13514.6 gi|385804134|ref|YP_005840534.1| - 0.0044 16.6 0.0 0.0079 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|385804134|ref|YP_005840534.1| - 0.011 15.7 0.0 0.025 14.7 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|385804134|ref|YP_005840534.1| - 0.077 13.4 0.1 0.19 12.1 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain MukB PF04310.12 gi|385804134|ref|YP_005840534.1| - 0.11 12.3 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal Mg_chelatase PF01078.21 gi|385804134|ref|YP_005840534.1| - 0.13 11.6 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|385804134|ref|YP_005840534.1| - 0.14 11.9 0.0 0.32 10.7 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|385804134|ref|YP_005840534.1| - 0.14 12.4 0.9 1.3 9.3 0.9 2.2 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|385804135|ref|YP_005840535.1| - 4.4e-30 105.0 0.0 6.5e-30 104.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385804135|ref|YP_005840535.1| - 1.1e-11 45.2 0.5 9.4e-05 22.4 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|385804135|ref|YP_005840535.1| - 1.2e-05 25.6 0.0 3.4e-05 24.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|385804135|ref|YP_005840535.1| - 2e-05 24.2 0.0 5e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|385804135|ref|YP_005840535.1| - 2.8e-05 24.7 0.0 4.5e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|385804135|ref|YP_005840535.1| - 4.5e-05 23.0 0.0 0.029 13.8 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|385804135|ref|YP_005840535.1| - 0.00016 21.5 0.0 0.016 15.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_27 PF13514.6 gi|385804135|ref|YP_005840535.1| - 0.00017 21.2 0.0 0.00091 18.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|385804135|ref|YP_005840535.1| - 0.00021 21.7 0.0 0.0012 19.2 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|385804135|ref|YP_005840535.1| - 0.00026 21.4 0.0 0.00046 20.6 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|385804135|ref|YP_005840535.1| - 0.00076 19.6 0.0 0.002 18.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|385804135|ref|YP_005840535.1| - 0.001 19.0 0.0 0.0017 18.4 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|385804135|ref|YP_005840535.1| - 0.0022 18.5 0.1 0.0065 17.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|385804135|ref|YP_005840535.1| - 0.003 17.5 0.0 0.0054 16.6 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase Mg_chelatase PF01078.21 gi|385804135|ref|YP_005840535.1| - 0.0033 16.8 0.0 0.22 10.9 0.0 2.1 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI DUF815 PF05673.13 gi|385804135|ref|YP_005840535.1| - 0.013 14.7 0.0 0.023 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Rad17 PF03215.15 gi|385804135|ref|YP_005840535.1| - 0.014 15.4 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_14 PF13173.6 gi|385804135|ref|YP_005840535.1| - 0.015 15.4 0.0 0.11 12.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|385804135|ref|YP_005840535.1| - 0.016 15.4 0.1 0.35 11.1 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_7 PF12775.7 gi|385804135|ref|YP_005840535.1| - 0.024 14.1 0.0 0.042 13.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|385804135|ref|YP_005840535.1| - 0.028 14.2 0.0 0.077 12.7 0.0 1.8 2 1 1 3 3 2 0 IstB-like ATP binding protein AAA_28 PF13521.6 gi|385804135|ref|YP_005840535.1| - 0.03 14.6 0.0 0.2 11.9 0.0 2.1 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|385804135|ref|YP_005840535.1| - 0.031 14.3 0.0 0.079 13.0 0.0 1.6 2 0 0 2 2 1 0 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|385804135|ref|YP_005840535.1| - 0.031 14.0 0.0 0.06 13.1 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 gi|385804135|ref|YP_005840535.1| - 0.033 13.5 0.0 0.062 12.6 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_30 PF13604.6 gi|385804135|ref|YP_005840535.1| - 0.035 13.8 0.0 0.13 11.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|385804135|ref|YP_005840535.1| - 0.093 13.1 0.0 0.16 12.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Guanylate_kin PF00625.21 gi|385804135|ref|YP_005840535.1| - 0.097 12.3 0.0 0.44 10.2 0.0 2.0 2 0 0 2 2 2 0 Guanylate kinase Dynamin_N PF00350.23 gi|385804135|ref|YP_005840535.1| - 0.1 12.6 0.0 0.25 11.4 0.0 1.6 2 0 0 2 2 2 0 Dynamin family AAA_24 PF13479.6 gi|385804135|ref|YP_005840535.1| - 0.11 12.2 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|385804135|ref|YP_005840535.1| - 0.11 12.4 0.0 0.6 10.0 0.0 2.0 2 0 0 2 2 2 0 NTPase T2SSE PF00437.20 gi|385804135|ref|YP_005840535.1| - 0.12 11.4 0.0 0.21 10.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_13 PF13166.6 gi|385804135|ref|YP_005840535.1| - 0.14 10.8 0.0 0.35 9.5 0.0 1.5 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|385804135|ref|YP_005840535.1| - 0.16 11.9 0.0 0.3 11.1 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE zf-C2H2_3 PF13878.6 gi|385804136|ref|YP_005840536.1| - 0.023 14.5 5.9 0.038 13.8 5.9 1.4 1 1 0 1 1 1 0 zinc-finger of acetyl-transferase ESCO GHMP_kinases_N PF00288.26 gi|385804138|ref|YP_005840538.1| - 3.7e-11 43.1 1.3 3.7e-11 43.1 1.3 2.1 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|385804138|ref|YP_005840538.1| - 0.14 12.6 0.0 0.41 11.1 0.0 1.8 1 0 0 1 1 1 0 GHMP kinases C terminal CM_2 PF01817.21 gi|385804139|ref|YP_005840539.1| - 7e-15 55.1 2.1 8.7e-15 54.8 2.1 1.1 1 0 0 1 1 1 1 Chorismate mutase type II DUF2461 PF09365.10 gi|385804139|ref|YP_005840539.1| - 0.081 12.9 0.0 0.09 12.7 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein (DUF2461) TruB_N PF01509.18 gi|385804140|ref|YP_005840540.1| - 5e-22 78.9 0.1 4.6e-17 62.8 0.1 3.3 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|385804140|ref|YP_005840540.1| - 2.4e-16 59.6 0.1 5.9e-15 55.2 0.1 2.5 1 1 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain DKCLD PF08068.12 gi|385804140|ref|YP_005840540.1| - 4.5e-08 33.0 0.2 1.3e-07 31.5 0.1 1.9 2 0 0 2 2 2 1 DKCLD (NUC011) domain PUA PF01472.20 gi|385804140|ref|YP_005840540.1| - 0.0038 17.1 0.0 0.0096 15.9 0.0 1.7 1 0 0 1 1 1 1 PUA domain Cytidylate_kin2 PF13189.6 gi|385804141|ref|YP_005840541.1| - 2.1e-17 63.8 2.9 5e-15 56.1 2.9 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|385804141|ref|YP_005840541.1| - 1.2e-15 58.2 0.0 1.6e-15 57.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|385804141|ref|YP_005840541.1| - 1.8e-13 51.1 0.0 2.6e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|385804141|ref|YP_005840541.1| - 6.6e-09 35.8 0.3 7.2e-05 22.6 0.0 2.1 1 1 1 2 2 2 2 Cytidylate kinase ADK PF00406.22 gi|385804141|ref|YP_005840541.1| - 2.9e-08 33.9 0.3 1.9e-07 31.3 0.3 1.9 1 1 1 2 2 2 1 Adenylate kinase AAA_33 PF13671.6 gi|385804141|ref|YP_005840541.1| - 8.5e-08 32.5 0.4 4.7e-06 26.8 0.4 2.1 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|385804141|ref|YP_005840541.1| - 7.7e-05 22.9 2.1 0.0022 18.1 2.1 2.2 1 1 0 1 1 1 1 Shikimate kinase AAA_28 PF13521.6 gi|385804141|ref|YP_005840541.1| - 0.0001 22.6 0.5 0.00019 21.7 0.5 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|385804141|ref|YP_005840541.1| - 0.006 16.9 0.0 0.0097 16.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|385804141|ref|YP_005840541.1| - 0.0071 16.8 0.0 0.011 16.1 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) CPT PF07931.12 gi|385804141|ref|YP_005840541.1| - 0.0091 15.9 0.1 0.11 12.3 0.1 2.1 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein AAA_16 PF13191.6 gi|385804141|ref|YP_005840541.1| - 0.012 16.0 1.3 0.019 15.4 1.3 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|385804141|ref|YP_005840541.1| - 0.027 14.2 3.0 1.3 8.8 0.4 2.3 1 1 1 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|385804141|ref|YP_005840541.1| - 0.031 14.3 0.0 0.053 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) dNK PF01712.19 gi|385804141|ref|YP_005840541.1| - 0.035 14.0 0.1 0.26 11.1 0.0 2.1 2 0 0 2 2 2 0 Deoxynucleoside kinase PRK PF00485.18 gi|385804141|ref|YP_005840541.1| - 0.046 13.5 0.0 0.11 12.3 0.0 1.6 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Zeta_toxin PF06414.12 gi|385804141|ref|YP_005840541.1| - 0.066 12.5 1.6 0.26 10.5 1.6 2.0 1 1 0 1 1 1 0 Zeta toxin RNA_helicase PF00910.22 gi|385804141|ref|YP_005840541.1| - 0.067 13.6 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Rad17 PF03215.15 gi|385804141|ref|YP_005840541.1| - 0.074 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain KTI12 PF08433.10 gi|385804141|ref|YP_005840541.1| - 0.077 12.4 0.0 0.12 11.8 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_24 PF13479.6 gi|385804141|ref|YP_005840541.1| - 0.12 12.1 0.1 0.29 10.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|385804141|ref|YP_005840541.1| - 0.17 12.4 0.0 0.25 11.9 0.0 1.5 1 1 0 1 1 1 0 ABC transporter AAA_29 PF13555.6 gi|385804141|ref|YP_005840541.1| - 0.2 11.4 0.3 0.4 10.4 0.3 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain EMC3_TMCO1 PF01956.16 gi|385804142|ref|YP_005840542.1| - 2.4e-49 167.4 0.6 3.1e-49 167.0 0.6 1.1 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like 60KD_IMP PF02096.20 gi|385804142|ref|YP_005840542.1| - 6.6e-06 26.1 0.2 1.1e-05 25.5 0.2 1.3 1 0 0 1 1 1 1 60Kd inner membrane protein ADK PF00406.22 gi|532164363|ref|YP_005840543.3| - 3.8e-41 140.7 0.0 4.5e-41 140.4 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|532164363|ref|YP_005840543.3| - 8.7e-21 74.8 0.1 3.2e-20 72.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain ADK_lid PF05191.14 gi|532164363|ref|YP_005840543.3| - 5.4e-18 64.7 0.7 9.2e-18 63.9 0.7 1.4 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_18 PF13238.6 gi|532164363|ref|YP_005840543.3| - 5.1e-09 36.8 0.0 9.9e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|532164363|ref|YP_005840543.3| - 3.2e-08 33.8 0.0 8.6e-08 32.4 0.0 1.6 2 0 0 2 2 2 1 AAA domain TF_Zn_Ribbon PF08271.12 gi|532164363|ref|YP_005840543.3| - 2.2e-05 23.8 2.6 5.4e-05 22.6 2.6 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding RuvB_N PF05496.12 gi|532164363|ref|YP_005840543.3| - 0.00045 20.0 0.0 0.00073 19.3 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Cytidylate_kin PF02224.18 gi|532164363|ref|YP_005840543.3| - 0.0041 16.9 0.0 0.013 15.2 0.0 1.7 1 1 0 1 1 1 1 Cytidylate kinase A2L_zn_ribbon PF08792.10 gi|532164363|ref|YP_005840543.3| - 0.0046 16.6 0.4 0.27 11.0 0.0 2.5 2 0 0 2 2 2 1 A2L zinc ribbon domain SKI PF01202.22 gi|532164363|ref|YP_005840543.3| - 0.0047 17.1 0.5 0.049 13.8 0.3 2.4 2 1 0 2 2 2 1 Shikimate kinase PduV-EutP PF10662.9 gi|532164363|ref|YP_005840543.3| - 0.0053 16.5 0.0 0.0097 15.6 0.0 1.4 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Zn_ribbon_recom PF13408.6 gi|532164363|ref|YP_005840543.3| - 0.0066 16.9 1.0 2.9 8.5 0.0 2.7 3 1 0 3 3 2 1 Recombinase zinc beta ribbon domain AAA_5 PF07728.14 gi|532164363|ref|YP_005840543.3| - 0.0082 16.1 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) DZR PF12773.7 gi|532164363|ref|YP_005840543.3| - 0.01 15.8 1.2 0.022 14.8 1.2 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|532164363|ref|YP_005840543.3| - 0.016 14.6 1.5 3.3 7.2 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|532164363|ref|YP_005840543.3| - 0.023 14.5 0.2 5.5 6.9 0.0 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger AAA PF00004.29 gi|532164363|ref|YP_005840543.3| - 0.029 14.8 0.1 0.061 13.7 0.0 1.7 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) zf-IS66 PF13005.7 gi|532164363|ref|YP_005840543.3| - 0.037 14.4 1.9 4.7 7.7 0.3 2.6 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf_UBZ PF18439.1 gi|532164363|ref|YP_005840543.3| - 0.064 12.9 1.0 9.5 5.9 0.1 2.5 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Prok-RING_1 PF14446.6 gi|532164363|ref|YP_005840543.3| - 0.071 13.1 7.2 0.072 13.0 0.9 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 DUF3039 PF11238.8 gi|532164363|ref|YP_005840543.3| - 0.074 12.8 0.4 0.77 9.6 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3039) Mg_chelatase PF01078.21 gi|532164363|ref|YP_005840543.3| - 0.096 12.1 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 gi|532164363|ref|YP_005840543.3| - 0.096 13.0 0.0 0.22 11.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain OrfB_Zn_ribbon PF07282.11 gi|532164363|ref|YP_005840543.3| - 0.099 12.6 0.4 0.22 11.5 0.4 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2H2_6 PF13912.6 gi|532164363|ref|YP_005840543.3| - 0.11 12.5 2.2 9.2 6.4 0.1 2.8 3 0 0 3 3 3 0 C2H2-type zinc finger Lar_restr_allev PF14354.6 gi|532164363|ref|YP_005840543.3| - 0.12 12.8 0.6 0.22 11.9 0.6 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar Rad17 PF03215.15 gi|532164363|ref|YP_005840543.3| - 0.15 12.0 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain zinc_ribbon_2 PF13240.6 gi|532164363|ref|YP_005840543.3| - 0.21 11.3 1.5 6.6 6.6 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|532164363|ref|YP_005840543.3| - 0.23 12.1 1.9 8.8 7.1 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.10 gi|532164363|ref|YP_005840543.3| - 0.36 11.0 4.0 2.6 8.2 4.2 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|532164363|ref|YP_005840543.3| - 0.37 10.8 1.4 1.3 9.0 1.4 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zf-ACC PF17848.1 gi|532164363|ref|YP_005840543.3| - 0.43 10.7 2.2 27 5.0 0.1 2.4 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-RRN7 PF11781.8 gi|532164363|ref|YP_005840543.3| - 0.45 10.2 2.9 7.4 6.4 0.2 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Nudix_N_2 PF14803.6 gi|532164363|ref|YP_005840543.3| - 0.55 10.2 5.1 11 6.1 0.6 2.4 2 0 0 2 2 2 0 Nudix N-terminal Rubredoxin_2 PF18073.1 gi|532164363|ref|YP_005840543.3| - 1.5 8.6 3.5 26 4.7 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Abhydrolase_1 PF00561.20 gi|385804145|ref|YP_005840545.1| - 7.9e-29 101.1 1.2 2e-28 99.7 1.2 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|385804145|ref|YP_005840545.1| - 4.9e-19 69.8 6.2 6.5e-19 69.4 6.2 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|385804145|ref|YP_005840545.1| - 1e-11 44.6 0.2 8.2e-11 41.6 0.2 2.0 1 1 0 1 1 1 1 Serine aminopeptidase, S33 DLH PF01738.18 gi|385804145|ref|YP_005840545.1| - 0.00027 20.6 0.1 0.018 14.6 0.0 3.0 2 1 1 3 3 3 1 Dienelactone hydrolase family FSH1 PF03959.13 gi|385804145|ref|YP_005840545.1| - 0.0087 15.7 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 Serine hydrolase (FSH1) Ndr PF03096.14 gi|385804145|ref|YP_005840545.1| - 0.021 13.5 0.0 0.044 12.5 0.0 1.5 2 0 0 2 2 2 0 Ndr family Esterase PF00756.20 gi|385804145|ref|YP_005840545.1| - 0.023 14.4 0.2 0.038 13.6 0.2 1.5 1 1 0 1 1 1 0 Putative esterase Abhydrolase_4 PF08386.10 gi|385804145|ref|YP_005840545.1| - 0.041 14.0 0.1 0.075 13.2 0.1 1.4 1 0 0 1 1 1 0 TAP-like protein Chlorophyllase PF07224.11 gi|385804145|ref|YP_005840545.1| - 0.11 11.5 0.0 0.33 9.9 0.0 1.7 1 1 0 1 1 1 0 Chlorophyllase HopW1-1 PF15457.6 gi|385804145|ref|YP_005840545.1| - 0.11 11.7 0.1 0.17 11.1 0.1 1.2 1 0 0 1 1 1 0 Type III T3SS secreted effector HopW1-1/HopPmaA adh_short PF00106.25 gi|385804147|ref|YP_005840547.1| - 8.7e-38 129.7 0.0 1.2e-37 129.2 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|385804147|ref|YP_005840547.1| - 2.5e-33 115.6 0.0 3.4e-33 115.1 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.21 gi|385804147|ref|YP_005840547.1| - 8.4e-05 22.1 0.0 9.7e-05 21.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|385804147|ref|YP_005840547.1| - 0.0084 16.0 0.0 0.011 15.7 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 gi|385804147|ref|YP_005840547.1| - 0.041 13.8 0.1 0.4 10.6 0.1 2.0 1 1 0 1 1 1 0 KR domain NUDIX PF00293.28 gi|385804148|ref|YP_005840548.1| - 2.9e-12 46.7 0.8 3.6e-12 46.5 0.8 1.1 1 0 0 1 1 1 1 NUDIX domain HTH_AsnC-type PF13404.6 gi|385804149|ref|YP_005840549.1| - 7.4e-18 64.1 1.3 1.7e-17 62.9 1.3 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|385804149|ref|YP_005840549.1| - 2.1e-16 59.2 0.8 3.7e-16 58.4 0.3 1.7 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|385804149|ref|YP_005840549.1| - 1.3e-10 41.1 0.7 2.2e-10 40.4 0.7 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_20 PF12840.7 gi|385804149|ref|YP_005840549.1| - 9e-07 28.9 0.0 1.7e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|385804149|ref|YP_005840549.1| - 1.6e-05 24.6 0.0 3.1e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|385804149|ref|YP_005840549.1| - 3.3e-05 23.7 0.1 0.00014 21.7 0.0 2.0 2 0 0 2 2 2 1 MarR family Sigma70_r4_2 PF08281.12 gi|385804149|ref|YP_005840549.1| - 3.9e-05 23.3 0.1 0.00078 19.1 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|385804149|ref|YP_005840549.1| - 0.00023 21.0 0.4 0.0004 20.2 0.1 1.6 2 0 0 2 2 1 1 MarR family HTH_23 PF13384.6 gi|385804149|ref|YP_005840549.1| - 0.00029 20.5 0.1 0.00063 19.5 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.6 gi|385804149|ref|YP_005840549.1| - 0.00031 20.1 0.1 0.0008 18.8 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 gi|385804149|ref|YP_005840549.1| - 0.00054 19.9 0.1 0.0013 18.7 0.1 1.7 1 0 0 1 1 1 1 HTH domain HTH_28 PF13518.6 gi|385804149|ref|YP_005840549.1| - 0.00076 19.6 0.1 0.0016 18.5 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|385804149|ref|YP_005840549.1| - 0.00084 19.0 0.3 0.002 17.8 0.3 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain GntR PF00392.21 gi|385804149|ref|YP_005840549.1| - 0.0013 18.3 0.2 0.003 17.2 0.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_29 PF13551.6 gi|385804149|ref|YP_005840549.1| - 0.0032 17.4 0.3 0.0057 16.6 0.1 1.6 2 0 0 2 2 1 1 Winged helix-turn helix Sigma70_r4 PF04545.16 gi|385804149|ref|YP_005840549.1| - 0.0034 16.9 1.2 0.0058 16.1 0.1 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 PaaX PF07848.12 gi|385804149|ref|YP_005840549.1| - 0.01 16.0 0.0 0.017 15.4 0.0 1.4 1 0 0 1 1 1 0 PaaX-like protein Rrf2 PF02082.20 gi|385804149|ref|YP_005840549.1| - 0.013 15.9 0.0 0.26 11.7 0.0 2.1 1 1 1 2 2 2 0 Transcriptional regulator HrcA_DNA-bdg PF03444.15 gi|385804149|ref|YP_005840549.1| - 0.014 15.0 0.1 0.052 13.2 0.0 1.9 1 1 1 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_Mga PF08280.11 gi|385804149|ref|YP_005840549.1| - 0.02 14.9 0.0 0.034 14.2 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain TrmB PF01978.19 gi|385804149|ref|YP_005840549.1| - 0.021 14.7 0.0 1 9.3 0.0 2.1 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB GYD PF08734.11 gi|385804149|ref|YP_005840549.1| - 0.024 14.6 0.7 0.076 13.0 0.2 2.0 2 1 0 2 2 2 0 GYD domain HTH_5 PF01022.20 gi|385804149|ref|YP_005840549.1| - 0.029 14.2 0.0 0.053 13.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family RPA_C PF08784.11 gi|385804149|ref|YP_005840549.1| - 0.034 14.8 0.0 0.074 13.7 0.0 1.6 1 0 0 1 1 1 0 Replication protein A C terminal MIase PF02426.16 gi|385804149|ref|YP_005840549.1| - 0.039 14.1 0.2 0.4 10.9 0.1 2.1 1 1 0 2 2 2 0 Muconolactone delta-isomerase DUF746 PF05344.11 gi|385804149|ref|YP_005840549.1| - 0.043 13.6 0.1 0.15 11.9 0.0 1.9 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_Crp_2 PF13545.6 gi|385804149|ref|YP_005840549.1| - 0.047 13.7 2.2 0.058 13.4 0.2 2.1 3 0 0 3 3 2 0 Crp-like helix-turn-helix domain DUF4191 PF13829.6 gi|385804149|ref|YP_005840549.1| - 0.055 12.8 0.3 0.14 11.5 0.1 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4191) HTH_27 PF13463.6 gi|385804149|ref|YP_005840549.1| - 0.066 13.7 0.2 0.38 11.3 0.1 2.0 1 1 1 2 2 2 0 Winged helix DNA-binding domain NapD PF03927.13 gi|385804149|ref|YP_005840549.1| - 0.077 13.1 0.9 0.17 11.9 1.0 1.5 2 0 0 2 2 1 0 NapD protein HTH_38 PF13936.6 gi|385804149|ref|YP_005840549.1| - 0.077 12.8 0.1 0.17 11.7 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain CPSase_sm_chain PF00988.22 gi|385804150|ref|YP_005840550.1| - 9.4e-38 128.9 0.0 1.2e-36 125.4 0.0 2.3 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|385804150|ref|YP_005840550.1| - 2.2e-35 122.2 0.0 8.2e-35 120.3 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|385804150|ref|YP_005840550.1| - 1.1e-06 28.6 0.1 0.00043 20.1 0.1 2.3 1 1 0 1 1 1 1 Peptidase C26 Acetyltransf_1 PF00583.25 gi|385804151|ref|YP_005840551.1| - 4e-09 36.7 0.0 7.8e-09 35.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|385804151|ref|YP_005840551.1| - 4.2e-06 27.5 0.0 1.2e-05 26.0 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|385804151|ref|YP_005840551.1| - 0.0002 21.3 0.0 0.00043 20.2 0.0 1.6 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.7 gi|385804151|ref|YP_005840551.1| - 0.00035 20.5 0.0 0.00085 19.3 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|385804151|ref|YP_005840551.1| - 0.00039 20.8 0.0 0.00075 19.9 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|385804151|ref|YP_005840551.1| - 0.033 14.3 0.0 0.08 13.1 0.0 1.6 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase GNAT_acetyltran PF12746.7 gi|385804151|ref|YP_005840551.1| - 0.056 13.0 0.0 0.095 12.3 0.0 1.3 1 0 0 1 1 1 0 GNAT acetyltransferase Acetyltransf_9 PF13527.7 gi|385804151|ref|YP_005840551.1| - 0.12 12.4 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Asparaginase PF00710.20 gi|385804152|ref|YP_005840552.1| - 9.1e-59 198.2 2.8 4e-58 196.1 2.4 1.9 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|385804152|ref|YP_005840552.1| - 1e-24 87.0 0.2 8.5e-24 84.0 0.0 2.2 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|385804152|ref|YP_005840552.1| - 3.1e-16 58.4 0.0 5.6e-16 57.6 0.0 1.4 1 0 0 1 1 1 1 GatD N-terminal domain CK2S PF15011.6 gi|385804153|ref|YP_005840553.1| - 0.00025 21.0 0.0 0.035 14.0 0.0 2.3 2 0 0 2 2 2 2 Casein Kinase 2 substrate FmdA_AmdA PF03069.15 gi|385804156|ref|YP_005840556.1| - 9.4e-165 548.0 0.0 1.1e-164 547.8 0.0 1.0 1 0 0 1 1 1 1 Acetamidase/Formamidase family Cpn60_TCP1 PF00118.24 gi|385804157|ref|YP_005840557.1| - 9.2e-138 459.9 3.4 1e-137 459.7 3.4 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Peripla_BP_5 PF13433.6 gi|385804158|ref|YP_005840558.1| - 3e-82 276.5 1.0 5.4e-82 275.7 1.0 1.3 1 1 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_6 PF13458.6 gi|385804158|ref|YP_005840558.1| - 1.5e-71 241.9 5.7 1.8e-71 241.6 5.7 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|385804158|ref|YP_005840558.1| - 7.5e-12 45.0 0.0 9.8e-12 44.6 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.9 gi|385804158|ref|YP_005840558.1| - 0.095 12.6 0.4 0.19 11.7 0.4 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF3798 PF12683.7 gi|385804158|ref|YP_005840558.1| - 0.098 12.1 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3798) BPD_transp_2 PF02653.16 gi|385804159|ref|YP_005840559.1| - 8.4e-40 136.6 46.0 1.1e-39 136.3 46.0 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component YlaC PF10777.9 gi|385804159|ref|YP_005840559.1| - 6.3 6.6 6.1 0.45 10.4 0.2 2.1 3 0 0 3 3 3 0 Inner membrane protein YlaC BPD_transp_2 PF02653.16 gi|385804160|ref|YP_005840560.1| - 5.6e-33 114.3 37.0 8.2e-33 113.7 37.0 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|385804161|ref|YP_005840561.1| - 7.8e-28 97.7 0.1 1.3e-27 97.0 0.1 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385804161|ref|YP_005840561.1| - 5.2e-07 29.8 1.6 0.0056 16.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385804161|ref|YP_005840561.1| - 0.0006 19.3 3.1 0.0023 17.4 3.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain BCA_ABC_TP_C PF12399.8 gi|385804161|ref|YP_005840561.1| - 0.00093 19.1 0.1 0.0017 18.2 0.1 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter RsgA_GTPase PF03193.16 gi|385804161|ref|YP_005840561.1| - 0.0099 15.8 0.4 0.02 14.8 0.1 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_29 PF13555.6 gi|385804161|ref|YP_005840561.1| - 0.016 14.9 0.0 0.034 13.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|385804161|ref|YP_005840561.1| - 0.039 13.5 0.0 4.3 6.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain Ribosomal_L4 PF00573.22 gi|385804161|ref|YP_005840561.1| - 0.064 12.9 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein L4/L1 family GerPE PF10970.8 gi|385804161|ref|YP_005840561.1| - 0.095 12.9 0.7 0.24 11.6 0.1 1.8 2 0 0 2 2 2 0 Spore germination protein GerPE Mg_chelatase PF01078.21 gi|385804161|ref|YP_005840561.1| - 0.097 12.0 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_23 PF13476.6 gi|385804161|ref|YP_005840561.1| - 0.12 12.8 4.3 0.38 11.2 4.0 2.1 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|385804162|ref|YP_005840562.1| - 3.2e-28 98.9 0.0 5.1e-28 98.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385804162|ref|YP_005840562.1| - 5.7e-07 29.6 1.2 0.01 15.6 0.2 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system NB-ARC PF00931.22 gi|385804162|ref|YP_005840562.1| - 0.0044 16.2 0.0 0.0056 15.9 0.0 1.3 1 1 0 1 1 1 1 NB-ARC domain NACHT PF05729.12 gi|385804162|ref|YP_005840562.1| - 0.0053 16.7 0.4 0.011 15.7 0.2 1.6 2 0 0 2 2 2 1 NACHT domain MMR_HSR1 PF01926.23 gi|385804162|ref|YP_005840562.1| - 0.0074 16.4 0.2 0.029 14.5 0.1 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|385804162|ref|YP_005840562.1| - 0.0096 15.8 0.1 0.02 14.8 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|385804162|ref|YP_005840562.1| - 0.012 15.9 0.2 0.043 14.1 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|385804162|ref|YP_005840562.1| - 0.014 15.8 0.1 0.023 15.1 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 gi|385804162|ref|YP_005840562.1| - 0.022 15.3 0.7 0.063 13.8 0.1 1.8 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|385804162|ref|YP_005840562.1| - 0.028 13.9 0.3 0.087 12.2 0.3 1.7 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.9 gi|385804162|ref|YP_005840562.1| - 0.033 13.0 1.0 11 4.7 0.1 2.9 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_29 PF13555.6 gi|385804162|ref|YP_005840562.1| - 0.058 13.1 0.1 0.11 12.2 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Roc PF08477.13 gi|385804162|ref|YP_005840562.1| - 0.081 13.1 0.0 0.17 12.1 0.0 1.5 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_14 PF13173.6 gi|385804162|ref|YP_005840562.1| - 0.085 12.9 0.0 0.59 10.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|385804162|ref|YP_005840562.1| - 0.16 11.7 0.2 0.24 11.1 0.2 1.5 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|385804162|ref|YP_005840562.1| - 0.19 11.9 0.1 0.22 11.7 0.1 1.4 1 1 0 1 1 1 0 AAA domain Usp PF00582.26 gi|385804163|ref|YP_005840563.1| - 1.1e-14 55.1 0.0 2.9e-14 53.8 0.0 1.6 1 1 0 1 1 1 1 Universal stress protein family CRCB PF02537.15 gi|385804164|ref|YP_005840564.1| - 1.8e-17 63.4 8.5 2.2e-17 63.1 8.5 1.1 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) CRCB PF02537.15 gi|385804165|ref|YP_005840565.1| - 1.4e-21 76.6 12.4 1.6e-21 76.4 12.4 1.0 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) ALG11_N PF15924.5 gi|385804165|ref|YP_005840565.1| - 0.2 11.7 1.5 0.33 11.0 0.1 1.8 1 1 1 2 2 2 0 ALG11 mannosyltransferase N-terminus MFS_3 PF05977.13 gi|385804165|ref|YP_005840565.1| - 0.22 9.8 3.6 0.26 9.6 3.6 1.0 1 0 0 1 1 1 0 Transmembrane secretion effector DUF3792 PF12670.7 gi|385804166|ref|YP_005840566.1| - 1.8 8.8 18.2 3 8.0 18.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3792) HTH_5 PF01022.20 gi|385804167|ref|YP_005840567.1| - 5.8e-15 54.9 0.1 1.4e-14 53.6 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|385804167|ref|YP_005840567.1| - 3.4e-13 49.4 1.6 1.8e-12 47.1 0.2 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|385804167|ref|YP_005840567.1| - 2e-10 40.4 0.0 8.9e-06 25.5 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|385804167|ref|YP_005840567.1| - 4.1e-10 39.4 0.3 5.5e-07 29.4 0.1 2.9 3 0 0 3 3 3 2 MarR family MarR PF01047.22 gi|385804167|ref|YP_005840567.1| - 3.9e-08 33.1 0.1 1.8e-05 24.5 0.1 2.6 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|385804167|ref|YP_005840567.1| - 4.2e-05 23.0 0.8 0.0002 20.8 0.1 2.4 2 1 0 2 2 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 gi|385804167|ref|YP_005840567.1| - 4.3e-05 23.6 0.0 0.00071 19.7 0.0 2.4 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|385804167|ref|YP_005840567.1| - 4.5e-05 23.9 0.3 0.0035 17.8 0.1 2.8 2 1 0 2 2 2 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|385804167|ref|YP_005840567.1| - 0.00022 21.5 0.0 0.019 15.3 0.0 2.4 2 0 0 2 2 2 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|385804167|ref|YP_005840567.1| - 0.00028 20.8 0.2 0.0022 17.9 0.1 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|385804167|ref|YP_005840567.1| - 0.00029 20.7 0.0 0.00091 19.1 0.0 1.9 1 0 0 1 1 1 1 HTH domain PadR PF03551.14 gi|385804167|ref|YP_005840567.1| - 0.00032 20.6 0.6 0.0062 16.5 0.1 3.0 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family Cas_Cas1 PF01867.16 gi|385804167|ref|YP_005840567.1| - 0.00052 19.2 0.3 0.00087 18.5 0.3 1.4 1 0 0 1 1 1 1 CRISPR associated protein Cas1 DprA_WH PF17782.1 gi|385804167|ref|YP_005840567.1| - 0.00066 19.7 0.5 0.0018 18.3 0.1 2.0 2 0 0 2 2 2 1 DprA winged helix domain DUF4423 PF14394.6 gi|385804167|ref|YP_005840567.1| - 0.00075 19.2 0.2 0.31 10.8 0.0 2.8 3 1 1 4 4 4 1 Domain of unknown function (DUF4423) DDRGK PF09756.9 gi|385804167|ref|YP_005840567.1| - 0.00076 19.1 0.3 0.028 14.0 0.0 2.5 2 0 0 2 2 2 1 DDRGK domain HTH_CodY PF08222.11 gi|385804167|ref|YP_005840567.1| - 0.021 14.3 0.0 0.25 10.9 0.0 2.2 2 0 0 2 2 2 0 CodY helix-turn-helix domain DUF2089 PF09862.9 gi|385804167|ref|YP_005840567.1| - 0.027 14.5 0.2 0.19 11.8 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2089) HTH_10 PF04967.12 gi|385804167|ref|YP_005840567.1| - 0.03 14.1 0.0 0.073 12.9 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_45 PF14947.6 gi|385804167|ref|YP_005840567.1| - 0.03 14.3 0.0 3.4 7.7 0.0 2.6 2 0 0 2 2 2 0 Winged helix-turn-helix ArsR PF09824.9 gi|385804167|ref|YP_005840567.1| - 0.032 13.8 0.0 0.44 10.1 0.0 2.2 2 0 0 2 2 2 0 ArsR transcriptional regulator HTH_IclR PF09339.10 gi|385804167|ref|YP_005840567.1| - 0.064 13.1 0.7 0.61 9.9 0.0 2.9 4 0 0 4 4 3 0 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|385804167|ref|YP_005840567.1| - 0.1 12.6 0.0 2 8.4 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain LZ_Tnp_IS66 PF13007.7 gi|385804167|ref|YP_005840567.1| - 0.16 12.7 2.0 4.3 8.2 0.0 2.8 3 0 0 3 3 2 0 Transposase C of IS166 homeodomain PHtD_u1 PF16645.5 gi|385804167|ref|YP_005840567.1| - 0.64 10.5 5.6 1.3 9.6 5.6 1.5 1 0 0 1 1 1 0 Unstructured region on Pneumococcal histidine triad protein DUF1405 PF07187.11 gi|385804168|ref|YP_005840568.1| - 1.8e-32 112.5 10.4 2.4e-32 112.1 10.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) iPGM_N PF06415.13 gi|385804169|ref|YP_005840569.1| - 1.2e-76 256.9 0.4 1.8e-76 256.4 0.4 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.18 gi|385804169|ref|YP_005840569.1| - 4.2e-76 255.6 1.3 4.8e-76 255.4 1.3 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily PglZ PF08665.12 gi|385804169|ref|YP_005840569.1| - 0.00032 20.9 0.1 0.00081 19.5 0.1 1.6 1 0 0 1 1 1 1 PglZ domain NIBRIN_BRCT_II PF16508.5 gi|385804169|ref|YP_005840569.1| - 0.047 14.0 0.0 6.3 7.1 0.0 2.5 2 0 0 2 2 2 0 Second BRCT domain on Nijmegen syndrome breakage protein MAP1B_neuraxin PF00414.17 gi|385804169|ref|YP_005840569.1| - 0.05 13.2 0.0 0.12 12.0 0.0 1.7 1 0 0 1 1 1 0 Neuraxin and MAP1B repeat DUF2026 PF09641.10 gi|385804169|ref|YP_005840569.1| - 0.073 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2026) SNARE_assoc PF09335.11 gi|385804170|ref|YP_005840570.1| - 4e-10 40.2 4.6 4e-10 40.2 4.6 2.3 2 1 0 2 2 2 1 SNARE associated Golgi protein MTTB PF06253.11 gi|385804170|ref|YP_005840570.1| - 0.56 8.1 1.0 0.76 7.7 1.0 1.1 1 0 0 1 1 1 0 Trimethylamine methyltransferase (MTTB) DUF2688 PF10892.8 gi|385804171|ref|YP_005840571.1| - 0.02 14.3 0.3 1.1 8.7 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2688) zf-CCHC_2 PF13696.6 gi|385804171|ref|YP_005840571.1| - 0.34 10.8 2.1 0.72 9.7 2.1 1.5 1 1 0 1 1 1 0 Zinc knuckle TssO PF17561.2 gi|385804172|ref|YP_005840572.1| - 0.028 14.5 4.3 0.035 14.2 4.3 1.1 1 0 0 1 1 1 0 Type VI secretion system, TssO Sigma70_ner PF04546.13 gi|385804172|ref|YP_005840572.1| - 0.029 14.2 4.1 0.032 14.1 4.1 1.1 1 0 0 1 1 1 0 Sigma-70, non-essential region FAM76 PF16046.5 gi|385804172|ref|YP_005840572.1| - 0.13 11.6 3.5 0.14 11.5 3.5 1.0 1 0 0 1 1 1 0 FAM76 protein ClpB_D2-small PF10431.9 gi|385804172|ref|YP_005840572.1| - 0.14 12.3 2.2 0.19 11.8 2.2 1.2 1 0 0 1 1 1 0 C-terminal, D2-small domain, of ClpB protein ABC_transp_aux PF09822.9 gi|385804174|ref|YP_005840574.1| - 2.7e-09 36.9 0.0 1e-08 35.0 0.0 1.9 1 1 0 1 1 1 1 ABC-type uncharacterized transport system DUF4350 PF14258.6 gi|385804174|ref|YP_005840574.1| - 3.6e-05 24.1 0.4 0.00013 22.3 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) Peptidase_S49 PF01343.18 gi|385804175|ref|YP_005840575.1| - 3.9e-18 65.9 1.5 2.1e-16 60.3 1.5 2.3 1 1 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 gi|385804175|ref|YP_005840575.1| - 0.0012 18.7 0.1 0.0037 17.2 0.0 1.7 2 0 0 2 2 2 1 Clp protease OKR_DC_1_N PF03709.15 gi|385804175|ref|YP_005840575.1| - 0.012 15.8 0.0 0.025 14.9 0.0 1.5 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain SDH_sah PF01972.16 gi|385804175|ref|YP_005840575.1| - 0.017 14.2 0.0 0.023 13.7 0.0 1.1 1 0 0 1 1 1 0 Serine dehydrogenase proteinase Peptidase_S49_N PF08496.10 gi|385804175|ref|YP_005840575.1| - 0.36 10.9 0.1 0.36 10.9 0.1 1.7 2 0 0 2 2 2 0 Peptidase family S49 N-terminal HAD_2 PF13419.6 gi|385804176|ref|YP_005840576.1| - 2e-13 50.8 0.0 1.2e-11 45.1 0.0 2.1 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|385804176|ref|YP_005840576.1| - 1.5e-08 35.2 0.0 7.4e-05 23.1 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|385804176|ref|YP_005840576.1| - 0.0088 16.5 0.7 1.4 9.3 0.2 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|385804176|ref|YP_005840576.1| - 0.014 15.5 0.0 0.033 14.2 0.0 1.6 1 0 0 1 1 1 0 HAD-hyrolase-like SpoU_methylase PF00588.19 gi|385804176|ref|YP_005840576.1| - 0.12 12.6 0.0 0.16 12.2 0.0 1.2 1 0 0 1 1 1 0 SpoU rRNA Methylase family zf-ribbon_3 PF13248.6 gi|385804177|ref|YP_005840577.1| - 0.0012 18.2 0.4 0.021 14.2 0.1 2.4 2 0 0 2 2 2 1 zinc-ribbon domain zf-Mss51 PF13824.6 gi|385804177|ref|YP_005840577.1| - 0.0016 18.5 0.1 0.14 12.3 0.2 2.4 2 0 0 2 2 2 1 Zinc-finger of mitochondrial splicing suppressor 51 Acetone_carb_G PF08882.11 gi|385804177|ref|YP_005840577.1| - 0.083 13.0 0.6 0.16 12.1 0.6 1.4 1 0 0 1 1 1 0 Acetone carboxylase gamma subunit zinc_ribbon_10 PF10058.9 gi|385804177|ref|YP_005840577.1| - 0.1 12.4 0.5 0.34 10.7 0.3 1.8 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Lar_restr_allev PF14354.6 gi|385804177|ref|YP_005840577.1| - 0.13 12.6 0.1 0.21 12.0 0.1 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|385804177|ref|YP_005840577.1| - 0.14 11.7 0.9 0.32 10.6 0.3 1.9 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|385804177|ref|YP_005840577.1| - 0.28 11.0 2.2 0.32 10.8 0.1 2.1 3 0 0 3 3 3 0 zinc-ribbon domain Desulfoferrod_N PF06397.12 gi|385804177|ref|YP_005840577.1| - 0.3 10.7 4.4 0.12 12.1 1.3 1.8 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-RRN7 PF11781.8 gi|385804177|ref|YP_005840577.1| - 1 9.1 4.3 0.4 10.4 0.6 2.2 2 1 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 THF_DHG_CYH_C PF02882.19 gi|385804178|ref|YP_005840578.1| - 6.2e-66 220.6 3.2 6.2e-66 220.6 3.2 1.5 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|385804178|ref|YP_005840578.1| - 2.2e-37 127.8 0.1 3.5e-37 127.2 0.1 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AlaDh_PNT_C PF01262.21 gi|385804178|ref|YP_005840578.1| - 0.012 14.9 1.0 0.024 13.9 0.7 1.5 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain SHMT PF00464.19 gi|385804179|ref|YP_005840579.1| - 9.8e-150 498.6 0.2 1.2e-149 498.3 0.2 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|385804179|ref|YP_005840579.1| - 7.6e-11 41.8 0.0 1.4e-10 41.0 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|385804179|ref|YP_005840579.1| - 5.6e-06 25.8 0.0 2.7e-05 23.6 0.0 1.9 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|385804179|ref|YP_005840579.1| - 0.0029 17.0 0.5 0.0045 16.3 0.5 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cas_Cas2CT1978 PF09707.10 gi|385804180|ref|YP_005840580.1| - 0.033 14.3 0.0 0.085 12.9 0.0 1.7 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas2CT1978) HydF_dimer PF18128.1 gi|385804180|ref|YP_005840580.1| - 0.12 12.5 1.1 21 5.3 0.5 2.6 2 0 0 2 2 2 0 Hydrogen maturase F dimerization domain YcaO PF02624.16 gi|385804181|ref|YP_005840581.1| - 4.9e-53 180.5 0.3 6.5e-53 180.1 0.3 1.2 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding DUF63 PF01889.17 gi|385804182|ref|YP_005840582.1| - 3e-39 135.8 13.5 3.6e-38 132.3 11.5 2.3 2 1 0 2 2 2 1 Membrane protein of unknown function DUF63 DUF4345 PF14248.6 gi|385804182|ref|YP_005840582.1| - 0.21 11.5 17.8 0.078 12.9 1.1 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4345) Inositol_P PF00459.25 gi|385804183|ref|YP_005840583.1| - 4.8e-56 190.3 3.7 5.4e-56 190.1 3.7 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|385804183|ref|YP_005840583.1| - 0.0075 15.8 0.1 0.013 15.0 0.1 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Usp PF00582.26 gi|385804184|ref|YP_005840584.1| - 1.4e-29 103.4 0.2 1.5e-29 103.3 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family IPT PF01745.16 gi|385804184|ref|YP_005840584.1| - 0.097 12.0 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 Isopentenyl transferase Thiamine_BP PF01910.17 gi|385804185|ref|YP_005840585.1| - 2.8e-22 78.4 0.7 3.5e-22 78.1 0.7 1.1 1 0 0 1 1 1 1 Thiamine-binding protein MCH PF02289.16 gi|385804186|ref|YP_005840586.1| - 2.6e-121 404.7 0.2 2.9e-121 404.5 0.2 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) ATP-synt_D PF01813.17 gi|385804186|ref|YP_005840586.1| - 0.07 13.0 0.0 0.28 11.0 0.0 1.8 1 1 1 2 2 2 0 ATP synthase subunit D Peptidase_M48 PF01435.18 gi|385804187|ref|YP_005840587.1| - 2.9e-36 125.1 0.0 4.1e-36 124.6 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M48_N PF16491.5 gi|385804187|ref|YP_005840587.1| - 9.2e-34 116.9 1.3 9.2e-34 116.9 1.3 2.5 2 1 0 2 2 2 1 CAAX prenyl protease N-terminal, five membrane helices Peptidase_M56 PF05569.11 gi|385804187|ref|YP_005840587.1| - 0.0032 16.7 0.8 0.006 15.8 0.0 1.8 2 0 0 2 2 2 1 BlaR1 peptidase M56 DUF2268 PF10026.9 gi|385804187|ref|YP_005840587.1| - 0.014 15.0 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) DUF2798 PF11391.8 gi|385804187|ref|YP_005840587.1| - 0.072 13.1 0.7 0.072 13.1 0.7 3.3 5 0 0 5 5 5 0 Protein of unknown function (DUF2798) SprT-like PF10263.9 gi|385804187|ref|YP_005840587.1| - 0.084 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 SprT-like family DUF4157 PF13699.6 gi|385804187|ref|YP_005840587.1| - 0.13 12.5 0.0 0.26 11.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) GTP_EFTU PF00009.27 gi|385804188|ref|YP_005840588.1| - 4.4e-35 121.0 0.1 6.9e-35 120.4 0.1 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|385804188|ref|YP_005840588.1| - 1.5e-11 44.5 0.4 6.1e-11 42.6 0.4 2.2 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D3 PF03143.17 gi|385804188|ref|YP_005840588.1| - 2.6e-08 34.1 0.1 8.7e-08 32.5 0.1 1.9 1 1 0 1 1 1 1 Elongation factor Tu C-terminal domain ATP_bind_1 PF03029.17 gi|385804188|ref|YP_005840588.1| - 0.016 15.0 1.0 0.11 12.3 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MMR_HSR1 PF01926.23 gi|385804188|ref|YP_005840588.1| - 0.035 14.2 0.0 0.14 12.3 0.0 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase DnaJ PF00226.31 gi|385804189|ref|YP_005840589.1| - 1.3e-15 57.2 0.1 1.9e-15 56.7 0.1 1.3 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.6 gi|385804189|ref|YP_005840589.1| - 0.0039 17.1 0.2 0.0086 16.0 0.1 1.6 1 1 1 2 2 2 1 A repeated domain in UCH-protein PrgI PF12666.7 gi|385804189|ref|YP_005840589.1| - 0.031 15.0 0.7 0.044 14.5 0.7 1.2 1 0 0 1 1 1 0 PrgI family protein UL41A PF17591.2 gi|385804189|ref|YP_005840589.1| - 0.14 12.3 1.2 6.4 7.0 0.2 2.3 2 0 0 2 2 2 0 Herpesvirus UL41A zf-H2C2_2 PF13465.6 gi|385804191|ref|YP_005840591.1| - 0.00036 20.8 0.3 0.92 10.0 0.0 2.1 2 0 0 2 2 2 2 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.7 gi|385804191|ref|YP_005840591.1| - 0.00042 20.2 0.4 0.00052 19.9 0.4 1.1 1 0 0 1 1 1 1 Transposase zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|385804191|ref|YP_005840591.1| - 0.002 18.0 0.8 0.013 15.3 0.8 2.0 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit Rubredoxin PF00301.20 gi|385804191|ref|YP_005840591.1| - 0.0049 16.9 0.6 3.4 7.8 0.1 2.2 2 0 0 2 2 2 2 Rubredoxin Zn-ribbon_8 PF09723.10 gi|385804191|ref|YP_005840591.1| - 0.0054 16.8 0.2 0.76 10.0 0.0 2.1 2 0 0 2 2 2 1 Zinc ribbon domain zf-C2H2 PF00096.26 gi|385804191|ref|YP_005840591.1| - 0.01 16.3 0.5 1.3 9.6 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Lar_restr_allev PF14354.6 gi|385804191|ref|YP_005840591.1| - 0.032 14.6 0.5 0.038 14.4 0.5 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-C2H2_4 PF13894.6 gi|385804191|ref|YP_005840591.1| - 0.051 14.4 0.3 2.3 9.3 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Zn_ribbon_SprT PF17283.2 gi|385804191|ref|YP_005840591.1| - 0.062 13.2 1.7 3.1 7.8 0.1 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain DUF4379 PF14311.6 gi|385804191|ref|YP_005840591.1| - 0.075 13.4 4.3 0.35 11.3 0.3 2.1 1 1 1 2 2 2 0 Probable Zinc-ribbon domain HypA PF01155.19 gi|385804191|ref|YP_005840591.1| - 0.11 12.5 0.3 4.5 7.3 0.1 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Acetone_carb_G PF08882.11 gi|385804191|ref|YP_005840591.1| - 0.13 12.4 1.6 4 7.6 0.3 2.1 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit UPF0547 PF10571.9 gi|385804191|ref|YP_005840591.1| - 0.18 11.9 4.7 2.2 8.5 0.3 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-Mss51 PF13824.6 gi|385804191|ref|YP_005840591.1| - 0.25 11.5 4.7 0.56 10.4 0.8 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2752 PF10825.8 gi|385804191|ref|YP_005840591.1| - 0.3 11.2 1.6 1.9 8.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) ABC_tran PF00005.27 gi|385804192|ref|YP_005840592.1| - 1.1e-30 106.9 0.0 1.5e-30 106.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385804192|ref|YP_005840592.1| - 7.3e-13 49.0 0.0 6.1e-07 29.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|385804192|ref|YP_005840592.1| - 4.5e-06 26.3 0.0 8.9e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|385804192|ref|YP_005840592.1| - 4.6e-05 23.0 0.2 0.0027 17.2 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|385804192|ref|YP_005840592.1| - 0.00021 21.1 0.0 0.017 14.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|385804192|ref|YP_005840592.1| - 0.00033 20.9 0.4 0.0071 16.6 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|385804192|ref|YP_005840592.1| - 0.00093 18.8 0.0 0.0016 18.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|385804192|ref|YP_005840592.1| - 0.0011 19.5 0.0 0.0015 19.1 0.0 1.4 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|385804192|ref|YP_005840592.1| - 0.0049 16.6 0.1 0.038 13.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain MukB PF04310.12 gi|385804192|ref|YP_005840592.1| - 0.057 13.2 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal ABC_ATPase PF09818.9 gi|385804192|ref|YP_005840592.1| - 0.073 11.9 0.6 6.1 5.5 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_24 PF13479.6 gi|385804192|ref|YP_005840592.1| - 0.082 12.6 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain Dynamin_N PF00350.23 gi|385804192|ref|YP_005840592.1| - 0.092 12.8 0.0 0.21 11.6 0.0 1.6 1 1 0 1 1 1 0 Dynamin family RsgA_GTPase PF03193.16 gi|385804192|ref|YP_005840592.1| - 0.1 12.5 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase ABC_tran PF00005.27 gi|385804193|ref|YP_005840593.1| - 1.6e-25 90.2 0.2 1.2e-12 48.5 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|385804193|ref|YP_005840593.1| - 1.1e-12 48.4 0.7 8.6e-07 29.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|385804193|ref|YP_005840593.1| - 8e-09 35.2 0.0 1.4e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.19 gi|385804193|ref|YP_005840593.1| - 4.2e-05 23.1 0.1 0.072 12.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain MukB PF04310.12 gi|385804193|ref|YP_005840593.1| - 0.0015 18.4 0.1 0.0027 17.6 0.1 1.3 1 0 0 1 1 1 1 MukB N-terminal AAA_23 PF13476.6 gi|385804193|ref|YP_005840593.1| - 0.0017 18.9 1.6 0.0027 18.2 1.6 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|385804193|ref|YP_005840593.1| - 0.014 15.1 0.4 0.038 13.7 0.2 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|385804193|ref|YP_005840593.1| - 0.038 13.7 0.1 0.11 12.2 0.2 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_16 PF13191.6 gi|385804193|ref|YP_005840593.1| - 0.12 12.8 0.1 7.1 7.0 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain BPD_transp_2 PF02653.16 gi|385804194|ref|YP_005840594.1| - 5.8e-41 140.4 53.8 1e-23 83.9 31.8 3.1 2 1 1 3 3 3 2 Branched-chain amino acid transport system / permease component CCD PF07860.11 gi|385804194|ref|YP_005840594.1| - 0.098 12.7 0.2 4.6 7.3 0.0 2.6 2 0 0 2 2 2 0 WisP family C-Terminal Region PDGLE PF13190.6 gi|385804194|ref|YP_005840594.1| - 0.61 10.0 4.0 1.1 9.2 0.2 3.1 2 0 0 2 2 2 0 PDGLE domain BPD_transp_2 PF02653.16 gi|385804195|ref|YP_005840595.1| - 2.7e-25 89.1 62.2 8.6e-22 77.6 62.2 3.2 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.6 gi|385804196|ref|YP_005840596.1| - 2.8e-41 142.3 10.4 3.9e-41 141.9 10.4 1.2 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|385804196|ref|YP_005840596.1| - 4.3e-36 124.7 0.0 5.6e-36 124.4 0.0 1.0 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|385804196|ref|YP_005840596.1| - 2e-12 46.8 0.1 1.6e-09 37.2 0.0 2.3 2 0 0 2 2 2 2 Periplasmic binding protein domain TAT_signal PF10518.9 gi|385804196|ref|YP_005840596.1| - 0.00012 21.7 1.2 0.00032 20.4 1.2 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence OrfB_IS605 PF01385.19 gi|385804197|ref|YP_005840597.1| - 2.1e-26 92.5 0.0 6.2e-26 91.0 0.0 1.8 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|385804197|ref|YP_005840597.1| - 1.3e-15 57.0 0.1 3.2e-15 55.8 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Tnp_DNA_bind PF14706.6 gi|385804198|ref|YP_005840598.1| - 3.9e-25 87.5 0.0 6.9e-25 86.7 0.0 1.4 1 0 0 1 1 1 1 Transposase DNA-binding DDE_Tnp_1 PF01609.21 gi|385804198|ref|YP_005840598.1| - 2.6e-08 33.8 0.0 5.4e-08 32.7 0.0 1.6 1 1 0 1 1 1 1 Transposase DDE domain Dimer_Tnp_Tn5 PF02281.16 gi|385804198|ref|YP_005840598.1| - 6.6e-08 32.2 0.1 1.6e-07 31.0 0.1 1.8 1 1 0 1 1 1 1 Transposase Tn5 dimerisation domain VAPB_antitox PF02697.14 gi|385804199|ref|YP_005840599.1| - 0.087 13.6 0.0 0.2 12.5 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin ESSS PF10183.9 gi|385804200|ref|YP_005840600.1| - 3.8 7.8 4.3 9.2 6.5 1.5 2.0 1 1 1 2 2 2 0 ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) Insulin_TMD PF17870.1 gi|385804200|ref|YP_005840600.1| - 4.1 7.5 6.7 0.19 11.8 0.9 1.7 2 0 0 2 2 2 0 Insulin receptor trans-membrane segment HATPase_c PF02518.26 gi|385804203|ref|YP_005840603.1| - 5.9e-17 62.2 0.2 1.6e-16 60.8 0.2 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|385804203|ref|YP_005840603.1| - 5.4e-11 42.7 0.0 1e-10 41.8 0.0 1.5 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 gi|385804203|ref|YP_005840603.1| - 2.3e-10 40.3 3.0 7.2e-10 38.8 1.1 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|385804203|ref|YP_005840603.1| - 1.2e-07 31.9 0.0 3e-07 30.6 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|385804203|ref|YP_005840603.1| - 4.6e-06 26.6 0.0 1.8e-05 24.7 0.0 2.1 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|385804203|ref|YP_005840603.1| - 0.0012 18.8 0.9 0.013 15.5 0.0 2.9 4 0 0 4 4 4 1 PAS domain HATPase_c_3 PF13589.6 gi|385804203|ref|YP_005840603.1| - 0.0076 16.1 0.1 0.024 14.5 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|385804203|ref|YP_005840603.1| - 0.0091 16.2 0.0 0.12 12.6 0.0 2.7 2 1 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.6 gi|385804203|ref|YP_005840603.1| - 0.12 12.3 0.3 1.3 9.0 0.3 2.4 1 1 0 1 1 1 0 GHKL domain Snf7 PF03357.21 gi|385804207|ref|YP_005840607.1| - 0.093 12.3 2.7 5.1 6.7 0.3 2.0 1 1 1 2 2 2 0 Snf7 TPR_11 PF13414.6 gi|385804207|ref|YP_005840607.1| - 0.1 12.3 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 TPR repeat HTH_20 PF12840.7 gi|385804210|ref|YP_005840610.1| - 0.011 15.8 0.8 0.015 15.3 0.8 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain MCD_N PF17408.2 gi|385804210|ref|YP_005840610.1| - 0.035 14.2 0.2 0.065 13.4 0.2 1.6 1 1 0 1 1 1 0 Malonyl-CoA decarboxylase N-terminal domain DUF3323 PF11796.8 gi|385804210|ref|YP_005840610.1| - 0.053 13.4 0.3 0.07 13.0 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function N-terminus (DUF3323) CheF-arch PF04283.12 gi|385804210|ref|YP_005840610.1| - 0.1 12.4 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Chemotaxis signal transduction system protein F from archaea TPP_enzyme_N PF02776.18 gi|385804213|ref|YP_005840613.1| - 0.056 13.0 0.1 0.068 12.8 0.1 1.2 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SecY PF00344.20 gi|385804218|ref|YP_005840618.1| - 1.1e-69 235.1 18.2 1.3e-69 234.8 18.2 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|385804218|ref|YP_005840618.1| - 8.1e-09 35.2 2.5 8.1e-09 35.2 2.5 2.5 3 0 0 3 3 3 1 Plug domain of Sec61p Ribosomal_L27A PF00828.19 gi|385804219|ref|YP_005840619.1| - 1.2e-17 64.7 0.1 1.9e-17 64.1 0.1 1.3 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A FlgM PF04316.13 gi|385804219|ref|YP_005840619.1| - 0.091 13.1 0.5 0.26 11.7 0.1 2.0 2 1 0 2 2 2 0 Anti-sigma-28 factor, FlgM Ribosomal_L30 PF00327.20 gi|385804220|ref|YP_005840620.1| - 3.7e-12 45.9 0.0 7.3e-12 45.0 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e DUF4936 PF16290.5 gi|385804220|ref|YP_005840620.1| - 0.014 16.0 0.1 0.022 15.4 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4936) Ribosomal_S5 PF00333.20 gi|385804221|ref|YP_005840621.1| - 1.5e-22 79.4 0.5 4.9e-22 77.7 0.1 2.1 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|385804221|ref|YP_005840621.1| - 3e-20 71.4 0.2 4.8e-20 70.8 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L5e PF17144.4 gi|385804222|ref|YP_005840622.1| - 8e-28 97.5 0.0 3.5e-17 62.9 0.0 2.5 2 1 1 3 3 3 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|385804222|ref|YP_005840622.1| - 0.00017 22.0 0.0 0.00037 20.8 0.0 1.6 2 0 0 2 2 2 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L19e PF01280.20 gi|385804223|ref|YP_005840623.1| - 7.3e-55 185.0 3.7 8.2e-55 184.8 3.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ribosomal_L32e PF01655.18 gi|385804224|ref|YP_005840624.1| - 3.6e-33 114.2 0.1 1.2e-32 112.6 0.1 1.8 2 0 0 2 2 2 1 Ribosomal protein L32 HHH_5 PF14520.6 gi|385804224|ref|YP_005840624.1| - 3.1e-09 37.3 0.3 1.3e-08 35.3 0.1 2.2 3 1 0 3 3 3 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|385804224|ref|YP_005840624.1| - 0.00026 20.7 0.0 0.00077 19.2 0.0 1.8 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.7 gi|385804224|ref|YP_005840624.1| - 0.0031 17.6 0.2 0.0084 16.2 0.1 1.7 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|385804224|ref|YP_005840624.1| - 0.0065 16.3 0.1 2.7 8.0 0.0 3.4 3 0 0 3 3 3 1 Helix-hairpin-helix motif Ribosomal_L6 PF00347.23 gi|385804225|ref|YP_005840625.1| - 3e-24 85.5 0.7 8.6e-11 42.4 0.1 2.8 2 1 0 2 2 2 2 Ribosomal protein L6 BcsB PF03170.13 gi|385804225|ref|YP_005840625.1| - 0.0062 15.0 0.0 0.0062 15.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial cellulose synthase subunit Ribosomal_S8 PF00410.19 gi|385804226|ref|YP_005840626.1| - 4.6e-24 84.8 0.0 5.9e-24 84.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|385804227|ref|YP_005840627.1| - 1e-11 44.4 3.4 1.1e-11 44.3 3.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.6 gi|385804227|ref|YP_005840627.1| - 0.019 14.9 0.3 0.024 14.5 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) zf-P11 PF03854.14 gi|385804227|ref|YP_005840627.1| - 0.019 14.6 0.6 0.027 14.1 0.6 1.2 1 0 0 1 1 1 0 P-11 zinc finger Ribosomal_L5_C PF00673.21 gi|385804228|ref|YP_005840628.1| - 5.6e-21 74.5 0.0 9.6e-21 73.8 0.0 1.5 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|385804228|ref|YP_005840628.1| - 4.7e-16 58.9 0.0 8.1e-16 58.1 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.20 gi|385804229|ref|YP_005840629.1| - 1.9e-20 72.5 0.0 3.3e-20 71.8 0.0 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|385804229|ref|YP_005840629.1| - 1.7e-11 44.0 0.0 3e-11 43.2 0.0 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|385804229|ref|YP_005840629.1| - 1.4e-06 27.9 0.1 2.6e-06 27.0 0.1 1.5 1 0 0 1 1 1 1 S4 domain KOW PF00467.29 gi|385804229|ref|YP_005840629.1| - 0.052 13.5 0.1 0.14 12.2 0.1 1.8 1 0 0 1 1 1 0 KOW motif Ribosomal_L26 PF16906.5 gi|385804230|ref|YP_005840630.1| - 6.2e-24 84.3 0.1 7.9e-24 83.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|385804230|ref|YP_005840630.1| - 2.4e-05 24.1 1.2 4.8e-05 23.2 1.2 1.6 1 1 0 1 1 1 1 KOW motif DUF4162 PF13732.6 gi|385804230|ref|YP_005840630.1| - 0.083 13.6 0.7 0.13 13.0 0.7 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4162) Ribosomal_L14 PF00238.19 gi|385804231|ref|YP_005840631.1| - 2.6e-37 127.6 0.5 3.1e-37 127.4 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.20 gi|385804232|ref|YP_005840632.1| - 6.8e-26 90.2 0.3 8.3e-26 89.9 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|385804232|ref|YP_005840632.1| - 0.053 13.9 0.0 0.085 13.2 0.0 1.4 1 0 0 1 1 1 0 Ribosomal_S17 N-terminal UPF0086 PF01868.16 gi|385804233|ref|YP_005840633.1| - 1.2e-22 79.6 0.0 5.2e-22 77.6 0.0 1.9 1 1 0 1 1 1 1 Domain of unknown function UPF0086 DUF4690 PF15756.5 gi|385804233|ref|YP_005840633.1| - 0.74 10.5 6.3 0.34 11.5 2.6 2.2 2 1 0 2 2 2 0 Small Novel Rich in Cartilage Ribosomal_L29 PF00831.23 gi|385804234|ref|YP_005840634.1| - 1e-17 63.8 0.2 1.2e-17 63.6 0.2 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein FUSC-like PF12805.7 gi|385804234|ref|YP_005840634.1| - 0.092 11.8 0.0 0.1 11.7 0.0 1.0 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS Ribosomal_S3_C PF00189.20 gi|385804235|ref|YP_005840635.1| - 2.4e-19 69.6 1.6 3.6e-19 69.1 0.7 1.8 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|385804235|ref|YP_005840635.1| - 4.1e-15 55.4 0.0 9.2e-15 54.2 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_5 PF13184.6 gi|385804235|ref|YP_005840635.1| - 0.017 15.2 0.0 0.12 12.5 0.0 2.3 2 0 0 2 2 2 0 NusA-like KH domain KH_1 PF00013.29 gi|385804235|ref|YP_005840635.1| - 0.029 14.2 0.1 0.029 14.2 0.1 2.5 3 0 0 3 3 3 0 KH domain Ribosomal_L22 PF00237.19 gi|385804236|ref|YP_005840636.1| - 5.4e-19 68.3 0.0 7e-19 68.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.21 gi|385804237|ref|YP_005840637.1| - 1.9e-29 101.4 0.0 2.6e-29 100.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 DUF3969 PF13108.6 gi|385804237|ref|YP_005840637.1| - 0.046 13.7 0.0 0.073 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3969) Citrate_synt PF00285.21 gi|385804237|ref|YP_005840637.1| - 0.076 12.1 0.0 0.082 12.0 0.0 1.1 1 0 0 1 1 1 0 Citrate synthase, C-terminal domain Ribosomal_L2_C PF03947.18 gi|385804238|ref|YP_005840638.1| - 2.4e-45 153.8 1.7 3.6e-45 153.2 1.7 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|385804238|ref|YP_005840638.1| - 2.8e-16 59.2 0.0 8.3e-16 57.7 0.0 1.8 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.20 gi|385804239|ref|YP_005840639.1| - 3.5e-11 43.3 0.9 1.2e-10 41.6 0.9 1.7 1 1 0 1 1 1 1 Ribosomal protein L23 P2 PF07194.11 gi|385804239|ref|YP_005840639.1| - 0.073 13.1 1.6 0.089 12.9 0.8 1.5 2 0 0 2 2 2 0 P2 response regulator binding domain Ribosomal_L4 PF00573.22 gi|385804240|ref|YP_005840640.1| - 6.9e-46 156.4 0.3 7.9e-46 156.2 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.22 gi|385804241|ref|YP_005840641.1| - 2.7e-100 335.9 0.0 4.7e-100 335.1 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.17 gi|385804242|ref|YP_005840642.1| - 4.2e-66 223.4 0.0 4.7e-66 223.2 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase eIF-1a PF01176.19 gi|385804242|ref|YP_005840642.1| - 0.00012 21.8 0.4 0.0019 18.0 0.2 2.3 2 0 0 2 2 2 1 Translation initiation factor 1A / IF-1 DDE_Tnp_1 PF01609.21 gi|385804243|ref|YP_005840643.1| - 1.1e-20 74.2 0.0 1.7e-20 73.6 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.6 gi|385804243|ref|YP_005840643.1| - 0.00032 19.1 0.0 0.00042 18.7 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain group 1 Zn-ribbon_8 PF09723.10 gi|385804244|ref|YP_005840644.1| - 0.2 11.8 1.6 0.55 10.4 1.6 1.8 1 1 0 1 1 1 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|385804244|ref|YP_005840644.1| - 0.52 10.4 4.4 0.63 10.1 0.6 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain TPR_16 PF13432.6 gi|385804244|ref|YP_005840644.1| - 0.6 10.8 5.1 0.63 10.7 0.5 2.6 3 0 0 3 3 3 0 Tetratricopeptide repeat DisA_N PF02457.16 gi|385804245|ref|YP_005840645.1| - 1.3e-09 37.7 0.3 1.9e-09 37.2 0.3 1.2 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding DisA_N PF02457.16 gi|385804246|ref|YP_005840646.1| - 0.00013 21.6 0.0 0.00019 21.0 0.0 1.3 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding FMN_dh PF01070.18 gi|385804247|ref|YP_005840647.1| - 7.4e-124 413.3 0.0 8.5e-124 413.1 0.0 1.0 1 0 0 1 1 1 1 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|385804247|ref|YP_005840647.1| - 3.5e-08 32.9 0.2 1.2e-07 31.1 0.2 1.8 1 1 1 2 2 2 1 IMP dehydrogenase / GMP reductase domain ThiG PF05690.14 gi|385804247|ref|YP_005840647.1| - 9.5e-07 28.4 0.1 0.012 14.9 0.0 2.2 1 1 1 2 2 2 2 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|385804247|ref|YP_005840647.1| - 0.001 18.6 0.2 0.52 9.7 0.0 3.1 2 1 2 4 4 4 2 Histidine biosynthesis protein Glu_synthase PF01645.17 gi|385804247|ref|YP_005840647.1| - 0.11 11.6 0.5 0.24 10.5 0.5 1.5 1 1 0 1 1 1 0 Conserved region in glutamate synthase TGT PF01702.18 gi|385804247|ref|YP_005840647.1| - 0.12 11.5 0.0 0.67 9.1 0.0 1.9 2 0 0 2 2 2 0 Queuine tRNA-ribosyltransferase DDE_5 PF13546.6 gi|385804248|ref|YP_005840648.1| - 3.2e-26 92.3 0.0 4.7e-26 91.7 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|385804248|ref|YP_005840648.1| - 8.1e-16 58.3 0.1 2.1e-15 56.9 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|385804248|ref|YP_005840648.1| - 0.00013 21.3 0.5 0.00055 19.3 0.5 1.8 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|385804248|ref|YP_005840648.1| - 0.016 13.5 0.0 0.022 13.0 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 DDE_Tnp_1_6 PF13751.6 gi|385804248|ref|YP_005840648.1| - 0.14 12.4 0.0 0.31 11.3 0.0 1.6 1 0 0 1 1 1 0 Transposase DDE domain PGA_cap PF09587.10 gi|385804249|ref|YP_005840649.1| - 3.4e-66 223.3 0.1 4.5e-66 222.9 0.1 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap CarboxypepD_reg PF13620.6 gi|385804249|ref|YP_005840649.1| - 5.3e-06 26.6 0.3 2.7e-05 24.3 0.1 2.4 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain AP_endonuc_2 PF01261.24 gi|385804249|ref|YP_005840649.1| - 0.033 13.6 0.0 0.65 9.4 0.0 2.2 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel UCR_Fe-S_N PF10399.9 gi|385804249|ref|YP_005840649.1| - 0.065 12.6 0.2 0.065 12.6 0.2 2.0 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal eIF-5_eIF-2B PF01873.17 gi|385804250|ref|YP_005840650.1| - 2.1e-30 105.0 0.0 3.2e-30 104.4 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|385804250|ref|YP_005840650.1| - 4e-09 36.3 2.0 6.9e-09 35.6 2.0 1.4 1 0 0 1 1 1 1 TRAM domain Lar_restr_allev PF14354.6 gi|385804250|ref|YP_005840650.1| - 0.058 13.8 0.5 0.98 9.8 0.6 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar zinc_ribbon_4 PF13717.6 gi|385804250|ref|YP_005840650.1| - 0.36 10.8 1.7 2.3 8.2 1.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|385804250|ref|YP_005840650.1| - 0.99 9.1 2.9 19 5.0 3.3 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|385804250|ref|YP_005840650.1| - 1 9.6 3.3 10 6.3 3.3 2.3 1 1 0 1 1 1 0 Zinc ribbon domain DS PF01916.17 gi|385804252|ref|YP_005840652.1| - 2.9e-93 312.3 0.3 1.2e-92 310.2 0.3 1.7 1 1 0 1 1 1 1 Deoxyhypusine synthase Peptidase_M22 PF00814.25 gi|385804252|ref|YP_005840652.1| - 0.01 15.5 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 0 Glycoprotease family DDE_Tnp_1 PF01609.21 gi|385804253|ref|YP_005840653.1| - 4.9e-15 55.8 0.0 1.7e-14 54.0 0.0 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|385804253|ref|YP_005840653.1| - 0.0013 18.0 0.0 0.0019 17.5 0.0 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|385804253|ref|YP_005840653.1| - 0.0051 15.1 0.0 0.0081 14.5 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain group 1 NIF3 PF01784.18 gi|385804254|ref|YP_005840654.1| - 2.3e-48 165.0 0.1 2.9e-48 164.6 0.1 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) Pallilysin PF18663.1 gi|385804254|ref|YP_005840654.1| - 0.093 12.7 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Pallilysin beta barrel domain NEMP PF10225.9 gi|385804255|ref|YP_005840655.1| - 0.002 17.9 0.7 0.002 17.9 0.7 2.4 2 0 0 2 2 2 1 NEMP family zf-C2H2 PF00096.26 gi|385804256|ref|YP_005840656.1| - 0.024 15.1 2.0 0.026 15.0 1.1 1.5 1 1 0 1 1 1 0 Zinc finger, C2H2 type TMEM191C PF15194.6 gi|385804256|ref|YP_005840656.1| - 0.088 13.0 0.0 0.091 13.0 0.0 1.1 1 0 0 1 1 1 0 TMEM191C family NinG PF05766.12 gi|385804256|ref|YP_005840656.1| - 0.092 12.7 0.0 0.1 12.5 0.0 1.0 1 0 0 1 1 1 0 Bacteriophage Lambda NinG protein zf-C2H2_4 PF13894.6 gi|385804256|ref|YP_005840656.1| - 0.36 11.8 2.8 0.59 11.1 2.8 1.4 1 0 0 1 1 1 0 C2H2-type zinc finger DUF35_N PF12172.8 gi|385804256|ref|YP_005840656.1| - 0.43 10.5 3.6 0.67 9.9 3.6 1.3 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Iron_transport PF10634.9 gi|385804257|ref|YP_005840657.1| - 3.8e-05 23.9 0.4 0.019 15.2 0.0 2.5 2 1 0 2 2 2 2 Fe2+ transport protein CoA_binding PF02629.19 gi|385804258|ref|YP_005840658.1| - 8e-25 87.4 1.6 1.7e-24 86.3 0.7 2.0 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|385804258|ref|YP_005840658.1| - 2.6e-13 50.1 0.9 5.1e-13 49.1 0.9 1.5 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|385804258|ref|YP_005840658.1| - 8.6e-09 35.3 0.0 1.3e-08 34.7 0.0 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|385804258|ref|YP_005840658.1| - 5.9e-06 26.8 0.0 8.1e-05 23.1 0.0 2.1 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|385804259|ref|YP_005840659.1| - 8.2e-65 218.1 0.2 1.4e-64 217.4 0.2 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|385804259|ref|YP_005840659.1| - 1.5e-18 67.1 0.6 1.5e-18 67.1 0.6 1.6 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|385804259|ref|YP_005840659.1| - 1.9e-12 47.3 1.6 1.9e-12 47.3 1.6 1.7 2 0 0 2 2 2 1 CoA-ligase CPSase_L_D2 PF02786.17 gi|385804259|ref|YP_005840659.1| - 5.8e-10 39.0 1.9 7.2e-09 35.5 0.4 2.2 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|385804259|ref|YP_005840659.1| - 5.5e-07 29.3 0.1 1e-06 28.4 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|385804259|ref|YP_005840659.1| - 7.6e-07 29.1 2.5 1e-06 28.6 0.2 2.1 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Ribonuc_red_lgC PF02867.15 gi|385804260|ref|YP_005840660.1| - 3.8e-133 444.8 0.1 4.6e-102 342.2 0.0 3.2 3 0 0 3 3 3 3 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|385804260|ref|YP_005840660.1| - 7.7e-27 93.1 0.0 4e-26 90.8 0.0 2.3 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain Intein_splicing PF14890.6 gi|385804260|ref|YP_005840660.1| - 1.6e-22 79.9 0.9 2.4e-12 47.0 0.0 3.0 3 0 0 3 3 3 2 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|385804260|ref|YP_005840660.1| - 9.8e-11 41.8 0.0 0.00076 19.8 0.1 3.7 3 0 0 3 3 3 2 LAGLIDADG-like domain PT-HINT PF07591.11 gi|385804260|ref|YP_005840660.1| - 1e-07 32.3 0.0 0.0094 16.2 0.0 3.3 3 0 0 3 3 3 2 Pretoxin HINT domain Hint PF01079.20 gi|385804260|ref|YP_005840660.1| - 2.2e-05 24.1 0.1 0.00031 20.3 0.1 2.4 2 0 0 2 2 2 1 Hint module LAGLIDADG_WhiA PF14527.6 gi|385804260|ref|YP_005840660.1| - 0.028 14.5 0.1 5.9 7.0 0.0 3.5 3 0 0 3 3 3 0 WhiA LAGLIDADG-like domain zf-RRN7 PF11781.8 gi|385804260|ref|YP_005840660.1| - 0.76 9.5 4.0 1.9 8.2 4.0 1.7 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-RING_7 PF02591.15 gi|385804260|ref|YP_005840660.1| - 2.1 8.6 4.0 13 6.1 0.0 3.2 3 0 0 3 3 3 0 C4-type zinc ribbon domain zf-Mss51 PF13824.6 gi|385804261|ref|YP_005840661.1| - 0.023 14.8 6.7 0.027 14.6 6.7 1.1 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 SQS_PSY PF00494.19 gi|385804262|ref|YP_005840662.1| - 6.9e-65 219.2 8.8 8.9e-65 218.8 8.8 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase RES PF08808.11 gi|385804262|ref|YP_005840662.1| - 0.24 11.2 3.1 0.15 12.0 0.2 2.0 2 1 1 3 3 3 0 RES domain Caroten_synth PF04240.12 gi|385804263|ref|YP_005840663.1| - 2.2e-62 210.7 15.8 2.6e-62 210.4 15.8 1.1 1 0 0 1 1 1 1 Carotenoid biosynthesis protein DUF3238 PF11579.8 gi|385804263|ref|YP_005840663.1| - 0.16 11.7 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3238) UbiA PF01040.18 gi|385804264|ref|YP_005840664.1| - 4e-23 82.0 23.0 6.1e-23 81.4 23.0 1.4 1 0 0 1 1 1 1 UbiA prenyltransferase family Amino_oxidase PF01593.24 gi|385804265|ref|YP_005840665.1| - 1.6e-30 106.8 0.0 2.1e-30 106.4 0.0 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|385804265|ref|YP_005840665.1| - 6.7e-18 64.7 0.0 1.8e-17 63.3 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|385804265|ref|YP_005840665.1| - 6.3e-13 49.0 0.0 7.4e-08 32.3 0.0 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|385804265|ref|YP_005840665.1| - 9e-10 39.0 0.7 4.9e-06 27.0 0.2 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|385804265|ref|YP_005840665.1| - 2.1e-07 30.5 0.6 1.3e-05 24.6 0.2 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|385804265|ref|YP_005840665.1| - 1.7e-06 27.1 0.0 0.0005 18.9 0.2 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|385804265|ref|YP_005840665.1| - 3.8e-06 26.2 2.1 5.3e-06 25.8 0.6 1.9 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|385804265|ref|YP_005840665.1| - 5.9e-05 22.6 0.0 7.8e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|385804265|ref|YP_005840665.1| - 7.8e-05 22.1 0.0 0.00086 18.6 0.0 2.5 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|385804265|ref|YP_005840665.1| - 0.00022 20.6 0.5 0.00036 19.9 0.5 1.3 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|385804265|ref|YP_005840665.1| - 0.0005 19.4 0.4 0.001 18.4 0.4 1.5 1 0 0 1 1 1 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|385804265|ref|YP_005840665.1| - 0.0016 17.8 0.1 0.0023 17.2 0.1 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|385804265|ref|YP_005840665.1| - 0.0054 17.2 0.0 0.0094 16.4 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding GIDA PF01134.22 gi|385804265|ref|YP_005840665.1| - 0.031 13.4 0.3 0.048 12.7 0.3 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A MCRA PF06100.11 gi|385804265|ref|YP_005840665.1| - 0.045 12.5 0.0 0.069 11.9 0.0 1.3 1 0 0 1 1 1 0 MCRA family GDI PF00996.18 gi|385804265|ref|YP_005840665.1| - 0.13 10.7 0.3 1.9 6.9 0.0 2.1 2 0 0 2 2 2 0 GDP dissociation inhibitor Trp_halogenase PF04820.14 gi|385804265|ref|YP_005840665.1| - 0.16 10.8 0.2 0.26 10.1 0.2 1.3 1 0 0 1 1 1 0 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|385804265|ref|YP_005840665.1| - 0.18 11.8 1.7 1.1 9.2 0.1 2.5 3 0 0 3 3 3 0 FAD-NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|385804265|ref|YP_005840665.1| - 0.21 11.1 0.3 0.37 10.3 0.3 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Usp PF00582.26 gi|385804266|ref|YP_005840666.1| - 2.1e-10 41.3 1.6 4e-10 40.3 1.6 1.4 1 1 0 1 1 1 1 Universal stress protein family UPF0160 PF03690.13 gi|385804266|ref|YP_005840666.1| - 0.075 12.7 0.0 0.083 12.5 0.0 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0160) NYN PF01936.18 gi|385804267|ref|YP_005840667.1| - 3e-20 73.2 0.1 5.1e-20 72.4 0.1 1.3 1 0 0 1 1 1 1 NYN domain TatD_DNase PF01026.21 gi|385804268|ref|YP_005840668.1| - 1.8e-20 73.4 0.0 7.8e-19 68.0 0.0 2.0 1 1 0 1 1 1 1 TatD related DNase DUF2150 PF09920.9 gi|385804269|ref|YP_005840669.1| - 6.4e-71 238.2 6.4 7.3e-71 238.0 6.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) HrpJ PF07201.11 gi|385804269|ref|YP_005840669.1| - 0.017 15.5 1.0 0.14 12.5 0.8 2.0 2 0 0 2 2 2 0 HrpJ-like domain DUF4996 PF16387.5 gi|385804269|ref|YP_005840669.1| - 0.16 12.5 0.3 0.57 10.7 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function HMG_CoA_synt_N PF01154.17 gi|385804270|ref|YP_005840670.1| - 4e-24 85.4 0.0 7.9e-24 84.5 0.0 1.5 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.10 gi|385804270|ref|YP_005840670.1| - 1.2e-19 71.1 0.0 2.2e-19 70.2 0.0 1.4 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HTH_31 PF13560.6 gi|385804271|ref|YP_005840671.1| - 8.9e-09 35.6 0.1 2.7e-08 34.0 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|385804271|ref|YP_005840671.1| - 7.1e-08 32.4 0.0 1.9e-07 31.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|385804271|ref|YP_005840671.1| - 6.3e-06 26.1 0.0 1.5e-05 24.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|385804271|ref|YP_005840671.1| - 0.024 14.6 0.1 0.32 11.0 0.0 2.6 3 0 0 3 3 3 0 HTH domain YdjM PF04307.14 gi|385804272|ref|YP_005840672.1| - 1.3e-07 31.1 1.6 1.6e-07 30.8 1.6 1.3 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Acetyltransf_1 PF00583.25 gi|385804273|ref|YP_005840673.1| - 2.4e-13 50.4 0.0 3.1e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|385804273|ref|YP_005840673.1| - 8.6e-08 32.5 0.0 1.4e-07 31.8 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|385804273|ref|YP_005840673.1| - 1.2e-07 31.8 0.0 1.6e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|385804273|ref|YP_005840673.1| - 4.8e-05 23.1 0.0 0.00011 22.0 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|385804273|ref|YP_005840673.1| - 0.00013 22.1 0.0 0.00032 20.8 0.0 1.6 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 gi|385804273|ref|YP_005840673.1| - 0.00055 20.6 0.0 0.0011 19.6 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|385804273|ref|YP_005840673.1| - 0.022 14.8 0.0 0.042 13.9 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|385804273|ref|YP_005840673.1| - 0.034 14.1 0.0 0.061 13.3 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein tRNA_SAD PF07973.14 gi|385804275|ref|YP_005840675.1| - 2.2e-11 43.6 0.0 4e-11 42.8 0.0 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|385804275|ref|YP_005840675.1| - 5.1e-11 41.8 0.1 7.8e-11 41.2 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|385804275|ref|YP_005840675.1| - 4.7e-07 30.3 0.2 1.3e-06 28.9 0.2 1.8 1 1 0 1 1 1 1 DHHA1 domain HTH_31 PF13560.6 gi|385804276|ref|YP_005840676.1| - 0.0073 16.6 1.8 0.017 15.4 0.4 2.3 2 1 0 2 2 2 1 Helix-turn-helix domain PhnA_Zn_Ribbon PF08274.12 gi|385804276|ref|YP_005840676.1| - 0.031 14.2 1.4 0.061 13.3 1.4 1.4 1 0 0 1 1 1 0 PhnA Zinc-Ribbon HTH_25 PF13413.6 gi|385804276|ref|YP_005840676.1| - 0.046 13.6 0.1 0.082 12.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_19 PF12844.7 gi|385804276|ref|YP_005840676.1| - 0.08 13.0 0.0 0.21 11.6 0.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain zf-C4_ClpX PF06689.13 gi|385804276|ref|YP_005840676.1| - 0.1 12.5 0.2 0.19 11.6 0.2 1.4 1 0 0 1 1 1 0 ClpX C4-type zinc finger Toprim_4 PF13662.6 gi|385804278|ref|YP_005840678.1| - 0.025 15.0 0.2 0.03 14.8 0.2 1.2 1 0 0 1 1 1 0 Toprim domain zf-ribbon_3 PF13248.6 gi|385804279|ref|YP_005840679.1| - 3.9e-05 22.9 1.5 6.3e-05 22.2 1.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|385804279|ref|YP_005840679.1| - 0.00087 18.9 1.5 0.0016 18.1 1.5 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|385804279|ref|YP_005840679.1| - 0.0012 18.9 0.1 0.0017 18.3 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|385804279|ref|YP_005840679.1| - 0.0031 18.2 0.0 0.0044 17.7 0.0 1.2 1 0 0 1 1 1 1 zinc-ribbon family zf-RING_4 PF14570.6 gi|385804279|ref|YP_005840679.1| - 0.056 13.3 0.5 0.1 12.4 0.5 1.3 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain NOB1_Zn_bind PF08772.11 gi|385804279|ref|YP_005840679.1| - 0.11 12.7 0.5 0.25 11.5 0.5 1.6 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Phage_integrase PF00589.22 gi|385804280|ref|YP_005840680.1| - 4.8e-10 39.5 0.1 9.8e-10 38.5 0.2 1.4 2 0 0 2 2 2 1 Phage integrase family DUF420 PF04238.12 gi|385804281|ref|YP_005840681.1| - 3.3e-36 124.5 13.5 3.3e-36 124.5 13.5 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.9 gi|385804281|ref|YP_005840681.1| - 1.9e-05 24.9 13.4 0.009 16.2 3.7 2.3 1 1 1 2 2 2 2 Predicted membrane protein (DUF2306) RrnaAD PF00398.20 gi|385804282|ref|YP_005840682.1| - 1.1e-49 168.9 0.0 1.4e-49 168.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|385804282|ref|YP_005840682.1| - 0.0007 20.3 0.1 0.0017 19.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain NodS PF05401.11 gi|385804282|ref|YP_005840682.1| - 0.01 15.4 0.0 0.04 13.5 0.0 1.8 2 0 0 2 2 2 0 Nodulation protein S (NodS) Methyltransf_11 PF08241.12 gi|385804282|ref|YP_005840682.1| - 0.048 14.3 0.0 0.094 13.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|385804282|ref|YP_005840682.1| - 0.055 14.2 0.2 0.18 12.6 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain MTS PF05175.14 gi|385804282|ref|YP_005840682.1| - 0.13 11.8 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain MTS PF05175.14 gi|385804283|ref|YP_005840683.1| - 1.3e-09 37.8 0.0 7e-09 35.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|385804283|ref|YP_005840683.1| - 9.1e-07 29.5 0.0 7.2e-06 26.6 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|385804283|ref|YP_005840683.1| - 3.6e-06 27.5 0.1 3.7e-05 24.3 0.1 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|385804283|ref|YP_005840683.1| - 6.9e-05 23.5 0.0 0.00064 20.4 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|385804283|ref|YP_005840683.1| - 0.00068 19.4 0.0 0.00091 19.0 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.6 gi|385804283|ref|YP_005840683.1| - 0.0015 18.4 0.0 0.0051 16.7 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|385804283|ref|YP_005840683.1| - 0.011 15.5 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.12 gi|385804283|ref|YP_005840683.1| - 0.016 15.0 0.1 0.024 14.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) PrmA PF06325.13 gi|385804283|ref|YP_005840683.1| - 0.017 14.5 0.2 0.032 13.6 0.2 1.4 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF5519 PF17648.1 gi|385804283|ref|YP_005840683.1| - 0.039 13.8 0.1 0.061 13.2 0.1 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5519) UPF0020 PF01170.18 gi|385804283|ref|YP_005840683.1| - 0.054 13.2 0.0 0.12 12.0 0.0 1.5 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 Methyltransf_3 PF01596.17 gi|385804283|ref|YP_005840683.1| - 0.1 11.8 0.0 0.44 9.7 0.0 1.8 2 0 0 2 2 2 0 O-methyltransferase UPF0146 PF03686.13 gi|385804283|ref|YP_005840683.1| - 0.11 12.3 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) Ubie_methyltran PF01209.18 gi|385804283|ref|YP_005840683.1| - 0.15 11.3 0.0 0.36 10.1 0.0 1.5 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.6 gi|385804283|ref|YP_005840683.1| - 0.17 11.8 0.0 0.24 11.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Meth_synt_1 PF08267.12 gi|385804284|ref|YP_005840684.1| - 5e-10 39.4 0.0 8.4e-10 38.7 0.0 1.4 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.18 gi|385804284|ref|YP_005840684.1| - 0.018 14.3 0.1 1.6 7.9 0.0 2.1 2 0 0 2 2 2 0 Cobalamin-independent synthase, Catalytic domain Meth_synt_2 PF01717.18 gi|385804285|ref|YP_005840685.1| - 1.1e-53 182.6 0.0 1.9e-53 181.9 0.0 1.3 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|385804285|ref|YP_005840685.1| - 2.4e-12 47.0 0.0 3.4e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain NDK PF00334.19 gi|385804286|ref|YP_005840686.1| - 3.3e-54 182.5 0.0 3.8e-54 182.4 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.20 gi|385804287|ref|YP_005840687.1| - 1.1e-19 70.4 0.0 1.3e-19 70.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e Ribosomal_S28e PF01200.18 gi|385804288|ref|YP_005840688.1| - 2.7e-27 94.5 0.8 3e-27 94.4 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.26 gi|385804289|ref|YP_005840689.1| - 5.4e-24 83.8 0.1 6.2e-24 83.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|385804289|ref|YP_005840689.1| - 1.7e-05 24.6 0.0 2.3e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.15 gi|385804289|ref|YP_005840689.1| - 0.0021 18.5 0.1 0.0043 17.5 0.1 1.5 1 1 0 1 1 1 1 eRF1 domain 3 DUF1269 PF06897.12 gi|385804289|ref|YP_005840689.1| - 0.0062 16.8 2.4 0.52 10.6 0.0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF1269) DUF456 PF04306.13 gi|385804290|ref|YP_005840690.1| - 1.1e-21 77.6 26.9 1.1e-21 77.6 26.9 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF456) Cyclase PF04199.13 gi|385804291|ref|YP_005840691.1| - 1.3e-18 67.5 0.7 1.6e-18 67.2 0.7 1.1 1 0 0 1 1 1 1 Putative cyclase tRNA-synt_1c PF00749.21 gi|385804292|ref|YP_005840692.1| - 3.3e-57 193.7 0.0 4.3e-57 193.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|385804292|ref|YP_005840692.1| - 7.8e-20 71.5 0.0 1.5e-19 70.5 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain polyprenyl_synt PF00348.17 gi|385804293|ref|YP_005840693.1| - 1.2e-64 217.8 0.5 1.5e-64 217.5 0.5 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Lactamase_B_2 PF12706.7 gi|385804294|ref|YP_005840694.1| - 5.1e-08 32.7 0.3 1.2e-06 28.2 0.1 2.4 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|385804294|ref|YP_005840694.1| - 4.9e-07 30.0 2.5 1.7e-06 28.2 2.7 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|385804294|ref|YP_005840694.1| - 9e-05 22.3 0.8 0.024 14.6 0.2 3.2 3 0 0 3 3 3 1 Zn-dependent metallo-hydrolase RNA specificity domain PDEase_II PF02112.15 gi|385804294|ref|YP_005840694.1| - 0.07 12.2 0.1 0.11 11.5 0.1 1.2 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II LSM PF01423.22 gi|385804295|ref|YP_005840695.1| - 5e-16 58.2 0.0 5.9e-16 57.9 0.0 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|385804295|ref|YP_005840695.1| - 4.7e-07 29.8 0.0 5.4e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 Ataxin 2 SM domain Ribosomal_L37e PF01907.19 gi|385804296|ref|YP_005840696.1| - 5.1e-22 77.8 12.4 5.5e-22 77.7 12.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e zf-piccolo PF05715.13 gi|385804296|ref|YP_005840696.1| - 0.0045 17.1 2.8 0.013 15.6 2.8 1.7 1 1 0 1 1 1 1 Piccolo Zn-finger Ribosomal_L32p PF01783.23 gi|385804296|ref|YP_005840696.1| - 0.006 16.8 3.0 0.0081 16.4 3.0 1.3 1 0 0 1 1 1 1 Ribosomal L32p protein family DZR PF12773.7 gi|385804296|ref|YP_005840696.1| - 0.011 15.7 2.9 0.015 15.3 2.9 1.1 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|385804296|ref|YP_005840696.1| - 0.063 13.3 2.5 0.07 13.2 2.5 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|385804296|ref|YP_005840696.1| - 0.17 11.6 6.1 1 9.1 5.9 2.0 1 1 1 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|385804296|ref|YP_005840696.1| - 0.4 10.6 5.4 1.2 9.0 0.4 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|385804296|ref|YP_005840696.1| - 0.54 9.7 4.8 3.1 7.3 4.6 2.1 1 1 2 3 3 3 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|385804296|ref|YP_005840696.1| - 0.73 9.6 6.0 3.7 7.4 0.6 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain OrfB_Zn_ribbon PF07282.11 gi|385804296|ref|YP_005840696.1| - 0.77 9.7 7.7 0.79 9.7 7.2 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain GATase_7 PF13537.6 gi|385804297|ref|YP_005840697.1| - 2.3e-21 76.0 0.0 8.1e-21 74.2 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|385804297|ref|YP_005840697.1| - 2.9e-20 72.9 0.4 7.7e-20 71.5 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|385804297|ref|YP_005840697.1| - 8.6e-09 35.1 0.1 2.3e-08 33.7 0.1 1.6 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.6 gi|385804297|ref|YP_005840697.1| - 0.0027 16.6 0.0 0.0051 15.7 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DUF3700 PF12481.8 gi|385804297|ref|YP_005840697.1| - 0.16 11.4 0.0 0.38 10.2 0.0 1.6 1 0 0 1 1 1 0 Aluminium induced protein DUF655 PF04919.12 gi|385804298|ref|YP_005840698.1| - 5.1e-62 209.0 0.1 6e-62 208.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.7 gi|385804298|ref|YP_005840698.1| - 8.3e-05 22.8 0.0 0.00017 21.8 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.16 gi|385804299|ref|YP_005840699.1| - 7.9e-13 48.8 0.8 1e-12 48.5 0.8 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 Ribosomal_L21e PF01157.18 gi|385804300|ref|YP_005840700.1| - 1.1e-31 108.7 0.1 1.2e-31 108.6 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e YiaAB PF05360.14 gi|385804301|ref|YP_005840701.1| - 0.19 12.0 5.7 0.26 11.5 5.7 1.2 1 0 0 1 1 1 0 yiaA/B two helix domain EF1_GNE PF00736.19 gi|385804302|ref|YP_005840702.1| - 7.4e-18 64.5 0.0 8.2e-18 64.4 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF3073 PF11273.8 gi|385804302|ref|YP_005840702.1| - 0.16 12.7 0.0 0.18 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3073) DUF1610 PF07754.11 gi|385804303|ref|YP_005840703.1| - 2e-05 24.4 11.3 8.9e-05 22.4 4.9 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) HscB_4_cys PF18256.1 gi|385804303|ref|YP_005840703.1| - 0.02 14.7 1.7 0.02 14.7 1.7 3.0 2 1 1 3 3 3 0 Co-chaperone HscB tetracysteine metal binding motif zf-CHY PF05495.12 gi|385804303|ref|YP_005840703.1| - 0.029 14.8 12.5 1.1 9.8 8.5 2.1 1 1 1 2 2 2 0 CHY zinc finger OrfB_Zn_ribbon PF07282.11 gi|385804303|ref|YP_005840703.1| - 0.063 13.2 11.9 0.17 11.8 2.2 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-Mss51 PF13824.6 gi|385804303|ref|YP_005840703.1| - 0.22 11.7 15.9 2.2 8.4 4.4 3.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 NMDAR2_C PF10565.9 gi|385804303|ref|YP_005840703.1| - 0.41 9.5 8.6 0.45 9.3 8.6 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus HypA PF01155.19 gi|385804303|ref|YP_005840703.1| - 0.76 9.8 13.5 0.72 9.9 2.1 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|385804303|ref|YP_005840703.1| - 0.79 9.2 16.1 6.4 6.3 0.2 4.1 4 0 0 4 4 4 0 zinc-ribbon domain UPF0547 PF10571.9 gi|385804303|ref|YP_005840703.1| - 1.1 9.4 0.2 1.1 9.4 0.2 3.6 3 1 1 4 4 4 0 Uncharacterised protein family UPF0547 zf-tcix PF14952.6 gi|385804303|ref|YP_005840703.1| - 1.1 8.9 0.0 1.1 8.9 0.0 3.5 2 1 1 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding PolC_DP2 PF03833.13 gi|385804303|ref|YP_005840703.1| - 3.4 5.4 9.3 3.7 5.3 9.3 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zinc_ribbon_2 PF13240.6 gi|385804303|ref|YP_005840703.1| - 5.3 6.9 20.3 38 4.2 7.1 3.8 2 2 1 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS91 PF14319.6 gi|385804303|ref|YP_005840703.1| - 5.8 7.0 12.8 15 5.7 12.8 1.7 1 1 0 1 1 1 0 Transposase zinc-binding domain Zn-ribbon_8 PF09723.10 gi|385804303|ref|YP_005840703.1| - 8.6 6.6 19.5 21 5.3 8.0 3.4 1 1 2 3 3 3 0 Zinc ribbon domain YhfH PF14149.6 gi|385804303|ref|YP_005840703.1| - 9.4 6.3 17.1 5.5 7.1 0.0 3.4 2 1 1 3 3 2 0 YhfH-like protein NRDD PF13597.6 gi|385804303|ref|YP_005840703.1| - 9.8 4.8 12.9 3.2 6.4 5.1 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase TctA PF01970.16 gi|385804304|ref|YP_005840704.1| - 9.4e-60 202.4 38.9 9.4e-60 202.4 38.9 1.3 2 0 0 2 2 2 1 Tripartite tricarboxylate transporter TctA family Ribosomal_60s PF00428.19 gi|385804305|ref|YP_005840705.1| - 1.4e-12 48.0 33.2 4.9e-12 46.3 33.2 1.7 1 1 0 1 1 1 1 60s Acidic ribosomal protein RRN3 PF05327.11 gi|385804305|ref|YP_005840705.1| - 0.0051 15.4 6.5 0.0058 15.2 6.5 1.0 1 0 0 1 1 1 1 RNA polymerase I specific transcription initiation factor RRN3 DUF2868 PF11067.8 gi|385804305|ref|YP_005840705.1| - 0.013 15.1 0.7 0.015 14.9 0.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2868) EF-hand_14 PF17959.1 gi|385804305|ref|YP_005840705.1| - 0.071 13.5 0.0 0.086 13.2 0.0 1.3 1 1 0 1 1 1 0 EF-hand domain TFIID_30kDa PF03540.13 gi|385804305|ref|YP_005840705.1| - 0.11 12.5 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Transcription initiation factor TFIID 23-30kDa subunit NOA36 PF06524.12 gi|385804305|ref|YP_005840705.1| - 0.17 11.2 10.4 0.18 11.1 10.4 1.1 1 0 0 1 1 1 0 NOA36 protein BUD22 PF09073.10 gi|385804305|ref|YP_005840705.1| - 0.33 10.2 8.2 0.36 10.1 8.2 1.0 1 0 0 1 1 1 0 BUD22 CDC45 PF02724.14 gi|385804305|ref|YP_005840705.1| - 1.1 7.5 7.8 1.2 7.3 7.8 1.0 1 0 0 1 1 1 0 CDC45-like protein DNA_pol_phi PF04931.13 gi|385804305|ref|YP_005840705.1| - 1.7 6.6 12.7 1.6 6.7 12.7 1.1 1 0 0 1 1 1 0 DNA polymerase phi Sigma70_ner PF04546.13 gi|385804305|ref|YP_005840705.1| - 3.1 7.6 12.4 3.7 7.4 12.4 1.1 1 0 0 1 1 1 0 Sigma-70, non-essential region RNA_pol_3_Rpc31 PF11705.8 gi|385804305|ref|YP_005840705.1| - 3.2 7.9 15.0 3.6 7.8 15.0 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 SDA1 PF05285.12 gi|385804305|ref|YP_005840705.1| - 5.7 6.3 11.4 6.3 6.1 11.4 1.1 1 0 0 1 1 1 0 SDA1 Nop53 PF07767.11 gi|385804305|ref|YP_005840705.1| - 7.3 5.9 9.6 8.6 5.6 9.6 1.1 1 0 0 1 1 1 0 Nop53 (60S ribosomal biogenesis) PPP4R2 PF09184.11 gi|385804305|ref|YP_005840705.1| - 8.4 5.9 10.8 9.3 5.7 10.8 1.1 1 0 0 1 1 1 0 PPP4R2 Ribosomal_L10 PF00466.20 gi|385804306|ref|YP_005840706.1| - 3e-21 75.4 0.0 4.9e-21 74.7 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|385804306|ref|YP_005840706.1| - 8.3e-14 51.4 0.0 1.5e-13 50.5 0.0 1.4 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Sporozoite_P67 PF05642.11 gi|385804306|ref|YP_005840706.1| - 0.27 9.3 7.4 0.41 8.7 7.4 1.2 1 0 0 1 1 1 0 Sporozoite P67 surface antigen Cwf_Cwc_15 PF04889.12 gi|385804306|ref|YP_005840706.1| - 4.6 6.9 16.3 7.2 6.3 16.3 1.2 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein Ribosomal_L1 PF00687.21 gi|385804307|ref|YP_005840707.1| - 3.4e-42 144.5 0.0 4.2e-42 144.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family MCM2_N PF12619.8 gi|385804307|ref|YP_005840707.1| - 0.056 13.7 0.5 0.056 13.7 0.5 2.3 1 1 2 3 3 3 0 Mini-chromosome maintenance protein 2 UvrB PF12344.8 gi|385804307|ref|YP_005840707.1| - 0.08 12.8 0.3 0.18 11.7 0.3 1.6 1 0 0 1 1 1 0 Ultra-violet resistance protein B BPL_LplA_LipB PF03099.19 gi|385804309|ref|YP_005840709.1| - 4.1e-17 62.3 0.0 7.4e-17 61.5 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.12 gi|385804309|ref|YP_005840709.1| - 3.6e-13 49.2 0.0 7.7e-13 48.2 0.0 1.6 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.17 gi|385804309|ref|YP_005840709.1| - 6.2e-13 48.4 0.1 1.1e-12 47.7 0.1 1.4 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_24 PF13412.6 gi|385804309|ref|YP_005840709.1| - 7.9e-05 22.1 0.0 0.00024 20.6 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|385804309|ref|YP_005840709.1| - 8.4e-05 22.6 0.1 0.00021 21.3 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|385804309|ref|YP_005840709.1| - 0.00098 18.9 0.0 0.0017 18.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family CPSase_L_D2 PF02786.17 gi|385804310|ref|YP_005840710.1| - 3.5e-74 248.9 0.1 5.9e-74 248.1 0.1 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|385804310|ref|YP_005840710.1| - 6.8e-45 152.1 1.7 2.2e-44 150.5 0.5 2.4 3 0 0 3 3 2 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|385804310|ref|YP_005840710.1| - 1.7e-36 124.6 0.0 3.5e-36 123.6 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.22 gi|385804310|ref|YP_005840710.1| - 5.6e-17 61.3 4.0 1.1e-16 60.4 2.4 2.4 2 0 0 2 2 2 1 Biotin-requiring enzyme ATP-grasp PF02222.22 gi|385804310|ref|YP_005840710.1| - 5.6e-09 35.8 0.3 2e-08 34.0 0.1 2.0 3 0 0 3 3 3 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|385804310|ref|YP_005840710.1| - 2.2e-08 33.9 0.0 4.8e-08 32.8 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus Biotin_lipoyl_2 PF13533.6 gi|385804310|ref|YP_005840710.1| - 5.1e-07 29.4 1.9 0.013 15.4 0.0 3.1 2 1 1 3 3 3 2 Biotin-lipoyl like ATP-grasp_3 PF02655.14 gi|385804310|ref|YP_005840710.1| - 0.0013 18.8 0.0 0.0032 17.5 0.0 1.7 1 0 0 1 1 1 1 ATP-grasp domain Peptidase_M23 PF01551.22 gi|385804310|ref|YP_005840710.1| - 0.0048 17.1 0.4 0.58 10.4 0.1 3.1 3 0 0 3 3 3 1 Peptidase family M23 ATPgrasp_ST PF14397.6 gi|385804310|ref|YP_005840710.1| - 0.0052 16.1 0.0 0.0094 15.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-transfer associated ATP-grasp ATP-grasp_5 PF13549.6 gi|385804310|ref|YP_005840710.1| - 0.017 14.6 0.0 0.033 13.6 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|385804310|ref|YP_005840710.1| - 0.017 14.8 0.0 0.045 13.5 0.0 1.7 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon GARS_A PF01071.19 gi|385804310|ref|YP_005840710.1| - 0.023 14.5 0.0 0.048 13.4 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Semialdhyde_dh PF01118.24 gi|385804311|ref|YP_005840711.1| - 5.1e-31 107.6 0.0 1.1e-30 106.5 0.0 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|385804311|ref|YP_005840711.1| - 7.8e-30 104.3 0.0 1.1e-29 103.8 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.20 gi|385804311|ref|YP_005840711.1| - 0.00011 22.3 0.0 0.00029 20.9 0.0 1.8 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.16 gi|385804311|ref|YP_005840711.1| - 0.00026 21.7 0.0 0.00059 20.6 0.0 1.6 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase Sacchrp_dh_NADP PF03435.18 gi|385804311|ref|YP_005840711.1| - 0.063 13.5 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|385804311|ref|YP_005840711.1| - 0.084 13.7 0.0 0.15 12.9 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_C PF02800.20 gi|385804311|ref|YP_005840711.1| - 0.14 11.8 0.0 0.34 10.5 0.0 1.6 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NAD_binding_10 PF13460.6 gi|385804311|ref|YP_005840711.1| - 0.15 12.0 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 NAD(P)H-binding DUF3387 PF11867.8 gi|385804312|ref|YP_005840712.1| - 8.7e-82 275.1 14.8 1.8e-81 274.1 14.8 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3387) SWI2_SNF2 PF18766.1 gi|385804312|ref|YP_005840712.1| - 2.6e-75 253.0 0.2 2.6e-75 253.0 0.2 1.9 2 0 0 2 2 2 1 SWI2/SNF2 ATPase ResIII PF04851.15 gi|385804312|ref|YP_005840712.1| - 8.1e-19 68.3 0.3 3.9e-18 66.0 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HIGH_NTase1 PF05636.11 gi|385804312|ref|YP_005840712.1| - 0.0067 15.7 2.7 0.021 14.1 0.5 2.3 2 0 0 2 2 2 1 HIGH Nucleotidyl Transferase FIST PF08495.10 gi|385804312|ref|YP_005840712.1| - 0.019 15.0 0.0 2.1 8.3 0.0 2.4 2 0 0 2 2 2 0 FIST N domain DUF928 PF06051.12 gi|385804312|ref|YP_005840712.1| - 0.02 14.7 1.5 0.046 13.6 1.5 1.6 1 0 0 1 1 1 0 Domain of Unknown Function (DUF928) CENP-O PF09496.10 gi|385804312|ref|YP_005840712.1| - 0.099 12.6 5.4 0.12 12.3 3.2 2.2 2 0 0 2 2 2 0 Cenp-O kinetochore centromere component BTG PF07742.12 gi|385804312|ref|YP_005840712.1| - 0.13 12.1 1.4 3.2 7.6 0.0 2.7 2 0 0 2 2 2 0 BTG family Vps4_C PF09336.10 gi|385804312|ref|YP_005840712.1| - 0.14 12.2 0.1 0.6 10.1 0.1 2.1 1 0 0 1 1 1 0 Vps4 C terminal oligomerisation domain DUF3810 PF12725.7 gi|385804312|ref|YP_005840712.1| - 0.44 9.9 2.9 2 7.7 0.7 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3810) V_ATPase_I PF01496.19 gi|385804312|ref|YP_005840712.1| - 0.93 7.3 15.1 0.049 11.5 8.3 1.9 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family MSC PF09402.10 gi|385804312|ref|YP_005840712.1| - 1.2 8.5 15.9 3.6 6.9 0.2 3.5 3 1 1 4 4 4 0 Man1-Src1p-C-terminal domain Bcl-2 PF00452.19 gi|385804312|ref|YP_005840712.1| - 1.3 9.8 3.9 0.9 10.3 0.3 2.7 3 1 0 3 3 2 0 Apoptosis regulator proteins, Bcl-2 family PIN_9 PF18477.1 gi|385804312|ref|YP_005840712.1| - 1.7 9.0 9.3 0.2 12.0 1.9 3.0 3 0 0 3 3 3 0 PIN like domain DUF433 PF04255.14 gi|385804314|ref|YP_005840714.1| - 6.1e-07 29.2 0.4 1.5e-06 28.0 0.1 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF433) DUF4296 PF14129.6 gi|385804314|ref|YP_005840714.1| - 0.0044 17.6 0.0 0.0057 17.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4296) Glyco_trans_1_2 PF13524.6 gi|385804314|ref|YP_005840714.1| - 0.012 16.0 0.3 0.016 15.6 0.3 1.3 1 0 0 1 1 1 0 Glycosyl transferases group 1 2-Hacid_dh_C PF02826.19 gi|385804316|ref|YP_005840716.1| - 1.2e-49 168.1 0.0 1.9e-49 167.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|385804316|ref|YP_005840716.1| - 4.4e-07 29.6 0.0 5.5e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.17 gi|385804316|ref|YP_005840716.1| - 0.0084 16.7 0.0 0.017 15.7 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.14 gi|385804317|ref|YP_005840717.1| - 9.1e-06 25.1 1.8 0.0006 19.1 0.7 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|385804317|ref|YP_005840717.1| - 9.2e-06 25.5 13.1 0.0039 16.8 0.8 2.6 1 1 1 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|385804317|ref|YP_005840717.1| - 0.00014 20.7 0.5 0.00076 18.3 0.5 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 gi|385804317|ref|YP_005840717.1| - 0.0019 17.6 9.4 0.0019 17.6 9.4 2.2 3 0 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|385804317|ref|YP_005840717.1| - 0.0019 17.5 4.5 0.018 14.3 4.5 2.1 1 1 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|385804317|ref|YP_005840717.1| - 0.0053 15.9 2.9 0.0092 15.1 1.7 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|385804317|ref|YP_005840717.1| - 0.012 14.9 2.1 0.023 14.0 2.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|385804317|ref|YP_005840717.1| - 0.02 14.1 0.5 0.12 11.7 0.2 2.1 2 0 0 2 2 2 0 Thi4 family NAD_binding_8 PF13450.6 gi|385804317|ref|YP_005840717.1| - 0.027 14.7 0.6 0.027 14.7 0.6 2.4 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|385804317|ref|YP_005840717.1| - 0.057 12.7 0.8 0.11 11.7 0.8 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.24 gi|385804317|ref|YP_005840717.1| - 0.067 12.3 10.6 0.019 14.1 5.8 2.1 2 0 0 2 2 2 0 FAD binding domain Trp_halogenase PF04820.14 gi|385804317|ref|YP_005840717.1| - 0.2 10.5 6.5 0.3 9.9 0.1 2.5 2 1 0 2 2 2 0 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|385804317|ref|YP_005840717.1| - 0.48 9.4 6.1 1.9 7.5 1.5 2.5 2 1 0 2 2 2 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|385804317|ref|YP_005840717.1| - 0.96 9.4 7.5 3.6 7.6 0.5 3.1 2 1 0 2 2 2 0 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 gi|385804318|ref|YP_005840718.1| - 0.0067 15.7 0.0 0.17 11.1 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|385804318|ref|YP_005840718.1| - 0.17 11.1 1.2 2.3 7.4 0.4 2.8 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF5615 PF18480.1 gi|385804320|ref|YP_005840720.1| - 1.6e-09 37.4 0.3 2.2e-09 36.9 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) PIN_10 PF18478.1 gi|385804320|ref|YP_005840720.1| - 0.00018 21.6 0.1 0.00026 21.1 0.1 1.2 1 0 0 1 1 1 1 PIN like domain DUF433 PF04255.14 gi|385804321|ref|YP_005840721.1| - 9.1e-19 67.1 0.1 1.2e-18 66.7 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF433) Type2_restr_D3 PF16902.5 gi|385804323|ref|YP_005840723.1| - 0.16 11.9 0.6 0.64 10.0 0.5 2.1 1 1 1 2 2 2 0 Type-2 restriction enzyme D3 domain PIN PF01850.21 gi|385804324|ref|YP_005840724.1| - 2.3e-11 44.3 0.1 2.7e-11 44.0 0.1 1.0 1 0 0 1 1 1 1 PIN domain TBPIP PF07106.13 gi|385804324|ref|YP_005840724.1| - 0.18 11.8 0.0 0.45 10.5 0.0 1.6 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain PrlF_antitoxin PF15937.5 gi|385804325|ref|YP_005840725.1| - 0.00018 21.9 0.0 0.00023 21.6 0.0 1.1 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin MazE_antitoxin PF04014.18 gi|385804325|ref|YP_005840725.1| - 0.0049 16.8 0.0 0.0065 16.4 0.0 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin TrmB PF01978.19 gi|385804328|ref|YP_005840728.1| - 0.0073 16.2 0.1 0.011 15.5 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DMAP1 PF05499.12 gi|385804328|ref|YP_005840728.1| - 0.023 14.6 0.1 0.031 14.2 0.1 1.1 1 0 0 1 1 1 0 DNA methyltransferase 1-associated protein 1 (DMAP1) HTH_27 PF13463.6 gi|385804328|ref|YP_005840728.1| - 0.031 14.7 0.1 0.1 13.1 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain Cdc6_C PF09079.11 gi|385804328|ref|YP_005840728.1| - 0.034 14.1 0.3 0.097 12.7 0.0 1.9 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain Gam PF06064.11 gi|385804328|ref|YP_005840728.1| - 0.071 13.4 0.0 0.28 11.4 0.0 2.0 1 1 1 2 2 2 0 Host-nuclease inhibitor protein Gam Aminotran_5 PF00266.19 gi|385804330|ref|YP_005840730.1| - 9.4e-28 97.2 0.0 1.2e-27 96.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DUF1623 PF07785.11 gi|385804330|ref|YP_005840730.1| - 0.16 12.2 1.2 1.6 8.9 0.1 3.0 4 1 0 4 4 4 0 Protein of unknown function (DUF1623) SelR PF01641.18 gi|385804331|ref|YP_005840731.1| - 1.1e-47 161.1 0.0 1.3e-47 160.8 0.0 1.1 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.14 gi|385804331|ref|YP_005840731.1| - 0.0024 18.0 0.0 0.0057 16.9 0.0 1.6 1 1 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly zinc_ribbon_10 PF10058.9 gi|385804331|ref|YP_005840731.1| - 0.015 15.0 0.1 0.9 9.3 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Izumo-Ig PF16706.5 gi|385804331|ref|YP_005840731.1| - 0.033 14.2 0.0 0.052 13.6 0.0 1.3 1 0 0 1 1 1 0 Izumo-like Immunoglobulin domain HECT_2 PF09814.9 gi|385804331|ref|YP_005840731.1| - 0.055 12.3 0.0 1.6 7.5 0.0 2.0 1 1 1 2 2 2 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding Zn_ribbon_SprT PF17283.2 gi|385804331|ref|YP_005840731.1| - 0.22 11.4 3.0 2.7 8.0 3.4 2.1 1 1 0 1 1 1 0 SprT-like zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|385804331|ref|YP_005840731.1| - 0.56 9.8 5.2 19 4.9 0.0 3.4 3 0 0 3 3 3 0 TFIIB zinc-binding Ribosomal_L11 PF00298.19 gi|385804332|ref|YP_005840732.1| - 1e-18 67.6 0.0 1.4e-18 67.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.14 gi|385804332|ref|YP_005840732.1| - 1.1e-16 60.3 0.1 1.7e-16 59.8 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Peptidase_M42 PF05343.14 gi|385804333|ref|YP_005840733.1| - 2.2e-77 259.9 1.9 2.6e-77 259.7 1.9 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|385804333|ref|YP_005840733.1| - 2.4e-09 37.2 0.1 3.8e-09 36.6 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.15 gi|385804333|ref|YP_005840733.1| - 9.7e-09 34.5 0.2 0.00055 18.8 0.1 3.0 2 1 0 3 3 3 2 Aminopeptidase I zinc metalloprotease (M18) Peptidase_M28 PF04389.17 gi|385804333|ref|YP_005840733.1| - 2e-06 27.6 0.1 2e-06 27.6 0.1 1.7 2 0 0 2 2 2 1 Peptidase family M28 GHMP_kinases_N PF00288.26 gi|385804335|ref|YP_005840735.1| - 1.6e-14 53.8 0.2 4e-14 52.6 0.2 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|385804335|ref|YP_005840735.1| - 3.1e-12 46.7 0.6 3.1e-11 43.5 0.2 2.4 2 1 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|385804335|ref|YP_005840735.1| - 9.1e-05 21.9 0.1 0.00017 21.0 0.1 1.5 1 0 0 1 1 1 1 Galactokinase galactose-binding signature AA_kinase PF00696.28 gi|385804336|ref|YP_005840736.1| - 1.5e-37 129.5 1.6 1.8e-37 129.2 1.6 1.1 1 0 0 1 1 1 1 Amino acid kinase family Lactamase_B_2 PF12706.7 gi|385804337|ref|YP_005840737.1| - 1.3e-18 67.3 0.8 1.9e-18 66.7 0.8 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|385804337|ref|YP_005840737.1| - 2.2e-11 44.1 1.8 3.3e-10 40.3 1.7 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Amidase02_C PF12123.8 gi|385804337|ref|YP_005840737.1| - 0.069 12.9 0.0 0.22 11.3 0.0 1.8 2 0 0 2 2 2 0 N-acetylmuramoyl-l-alanine amidase HcyBio PF01837.16 gi|385804337|ref|YP_005840737.1| - 0.14 11.0 0.0 0.21 10.4 0.0 1.2 1 0 0 1 1 1 0 Homocysteine biosynthesis enzyme, sulfur-incorporation DEAD_assoc PF08494.11 gi|385804338|ref|YP_005840738.1| - 2e-53 181.0 0.6 4.6e-53 179.9 0.6 1.6 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|385804338|ref|YP_005840738.1| - 6e-28 97.8 0.0 4.3e-14 52.7 0.0 3.2 2 1 1 3 3 3 2 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|385804338|ref|YP_005840738.1| - 7.8e-19 68.1 0.1 9e-18 64.6 0.1 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|385804338|ref|YP_005840738.1| - 3.5e-07 30.4 0.0 2e-06 28.0 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|385804338|ref|YP_005840738.1| - 0.00095 19.4 0.1 0.035 14.4 0.1 3.0 1 1 0 1 1 1 1 AAA domain AAA_12 PF13087.6 gi|385804339|ref|YP_005840739.1| - 1.3e-41 142.4 0.0 2.1e-41 141.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|385804339|ref|YP_005840739.1| - 2.3e-41 142.3 2.3 7.4e-20 71.8 1.2 2.8 2 1 1 3 3 3 2 AAA domain AAA_30 PF13604.6 gi|385804339|ref|YP_005840739.1| - 8.8e-20 71.2 6.8 1.3e-19 70.7 1.9 2.9 3 0 0 3 3 3 1 AAA domain Dna2 PF08696.11 gi|385804339|ref|YP_005840739.1| - 1e-18 67.9 0.0 3.7e-17 62.8 0.0 2.2 1 1 0 1 1 1 1 DNA replication factor Dna2 AAA_19 PF13245.6 gi|385804339|ref|YP_005840739.1| - 1.1e-13 51.8 0.7 5.3e-13 49.5 0.3 2.4 2 1 1 3 3 2 1 AAA domain Viral_helicase1 PF01443.18 gi|385804339|ref|YP_005840739.1| - 1.8e-10 41.0 1.1 0.00024 20.9 0.2 3.3 2 1 1 3 3 3 3 Viral (Superfamily 1) RNA helicase PDDEXK_1 PF12705.7 gi|385804339|ref|YP_005840739.1| - 8.6e-10 39.0 0.0 1.9e-09 37.8 0.0 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF2075 PF09848.9 gi|385804339|ref|YP_005840739.1| - 5.2e-06 25.9 0.1 8.2e-05 22.0 0.0 2.6 3 0 0 3 3 3 1 Uncharacterized conserved protein (DUF2075) UvrD-helicase PF00580.21 gi|385804339|ref|YP_005840739.1| - 2.9e-05 23.7 0.0 4.6e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain Cas_Cas4 PF01930.17 gi|385804339|ref|YP_005840739.1| - 0.0001 22.5 0.0 0.0012 19.0 0.0 2.4 1 1 0 1 1 1 1 Domain of unknown function DUF83 UvrD_C_2 PF13538.6 gi|385804339|ref|YP_005840739.1| - 0.0002 21.1 0.0 0.00048 19.9 0.0 1.7 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_22 PF13401.6 gi|385804339|ref|YP_005840739.1| - 0.00035 20.8 0.2 0.0084 16.4 0.1 3.1 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|385804339|ref|YP_005840739.1| - 0.0014 19.1 0.4 0.0051 17.2 0.3 2.2 1 1 0 1 1 1 1 AAA ATPase domain PIF1 PF05970.14 gi|385804339|ref|YP_005840739.1| - 0.0019 17.5 0.0 0.21 10.7 0.0 2.2 2 0 0 2 2 2 1 PIF1-like helicase AAA_25 PF13481.6 gi|385804339|ref|YP_005840739.1| - 0.0021 17.7 0.1 0.0057 16.2 0.1 1.8 1 0 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|385804339|ref|YP_005840739.1| - 0.0044 17.0 0.0 0.012 15.6 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_24 PF13479.6 gi|385804339|ref|YP_005840739.1| - 0.0069 16.1 0.0 0.019 14.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain Helicase_RecD PF05127.14 gi|385804339|ref|YP_005840739.1| - 0.011 15.6 0.2 0.062 13.2 0.2 2.3 2 1 0 2 2 1 0 Helicase PhoH PF02562.16 gi|385804339|ref|YP_005840739.1| - 0.011 15.1 0.0 0.061 12.8 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein T2SSE PF00437.20 gi|385804339|ref|YP_005840739.1| - 0.013 14.6 0.0 0.028 13.5 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA PF00004.29 gi|385804339|ref|YP_005840739.1| - 0.013 15.9 0.0 0.038 14.4 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|385804339|ref|YP_005840739.1| - 0.016 15.0 0.0 0.039 13.7 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain TrwB_AAD_bind PF10412.9 gi|385804339|ref|YP_005840739.1| - 0.021 13.8 0.0 0.034 13.1 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_5 PF07728.14 gi|385804339|ref|YP_005840739.1| - 0.022 14.8 0.0 0.11 12.5 0.0 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|385804339|ref|YP_005840739.1| - 0.047 13.1 0.0 0.083 12.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|385804339|ref|YP_005840739.1| - 0.055 13.0 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region SRP54 PF00448.22 gi|385804339|ref|YP_005840739.1| - 0.059 13.0 0.0 0.16 11.6 0.0 1.7 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_10 PF12846.7 gi|385804339|ref|YP_005840739.1| - 0.076 11.9 0.0 0.48 9.3 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain DDE_5 PF13546.6 gi|385804340|ref|YP_005840740.1| - 3.2e-26 92.3 0.0 4.7e-26 91.7 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|385804340|ref|YP_005840740.1| - 8.1e-16 58.3 0.1 2.1e-15 56.9 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|385804340|ref|YP_005840740.1| - 0.00013 21.3 0.5 0.00055 19.3 0.5 1.8 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|385804340|ref|YP_005840740.1| - 0.016 13.5 0.0 0.022 13.0 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 DDE_Tnp_1_6 PF13751.6 gi|385804340|ref|YP_005840740.1| - 0.14 12.4 0.0 0.31 11.3 0.0 1.6 1 0 0 1 1 1 0 Transposase DDE domain ZapA PF05164.13 gi|385804341|ref|YP_005840741.1| - 0.14 12.6 0.0 1.5 9.3 0.0 2.3 2 0 0 2 2 2 0 Cell division protein ZapA FtsX PF02687.21 gi|385804342|ref|YP_005840742.1| - 0.46 11.0 9.2 9.5 6.8 9.2 2.0 1 1 0 1 1 1 0 FtsX-like permease family ABC_tran PF00005.27 gi|385804343|ref|YP_005840743.1| - 2.4e-32 112.3 0.0 5e-32 111.3 0.0 1.6 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|385804343|ref|YP_005840743.1| - 9.3e-12 45.2 7.2 1.4e-11 44.5 7.2 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 gi|385804343|ref|YP_005840743.1| - 2.7e-06 27.0 2.4 1.4e-05 24.7 0.3 2.0 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|385804343|ref|YP_005840743.1| - 3e-06 27.3 0.0 5.7e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|385804343|ref|YP_005840743.1| - 0.0019 18.4 0.2 0.017 15.4 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|385804343|ref|YP_005840743.1| - 0.0021 17.8 0.0 0.0044 16.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|385804343|ref|YP_005840743.1| - 0.009 16.5 0.0 0.021 15.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|385804343|ref|YP_005840743.1| - 0.009 15.6 0.3 0.043 13.4 0.3 2.3 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|385804343|ref|YP_005840743.1| - 0.011 16.1 0.0 0.051 14.0 0.0 2.2 2 0 0 2 2 1 0 RNA helicase AAA_16 PF13191.6 gi|385804343|ref|YP_005840743.1| - 0.031 14.7 0.1 0.11 12.9 0.1 2.1 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|385804343|ref|YP_005840743.1| - 0.041 13.9 0.0 0.13 12.2 0.0 2.0 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|385804343|ref|YP_005840743.1| - 0.047 13.4 0.3 0.21 11.3 0.3 2.0 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|385804343|ref|YP_005840743.1| - 0.052 12.8 0.0 0.16 11.2 0.0 1.8 1 0 0 1 1 1 0 Zeta toxin IstB_IS21 PF01695.17 gi|385804343|ref|YP_005840743.1| - 0.054 13.2 0.2 0.78 9.5 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_18 PF13238.6 gi|385804343|ref|YP_005840743.1| - 0.1 13.1 0.0 0.22 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain Spore_YhcN_YlaJ PF09580.10 gi|385804343|ref|YP_005840743.1| - 0.11 12.6 0.3 0.21 11.6 0.3 1.4 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) APS_kinase PF01583.20 gi|385804343|ref|YP_005840743.1| - 0.12 12.3 0.0 0.43 10.5 0.0 2.0 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_33 PF13671.6 gi|385804343|ref|YP_005840743.1| - 0.13 12.5 0.1 0.67 10.1 0.1 2.3 1 1 0 1 1 1 0 AAA domain Zincin_2 PF10103.9 gi|385804344|ref|YP_005840744.1| - 1.2e-65 222.0 1.8 8e-36 123.9 0.2 2.0 1 1 1 2 2 2 2 Zincin-like metallopeptidase Ribosomal_S2 PF00318.20 gi|385804345|ref|YP_005840745.1| - 8e-24 84.1 0.2 1.6e-13 50.4 0.5 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Enolase_C PF00113.22 gi|385804346|ref|YP_005840746.1| - 1.7e-74 250.7 0.4 2.5e-74 250.2 0.4 1.2 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|385804346|ref|YP_005840746.1| - 5.5e-36 123.6 0.9 3.1e-35 121.2 0.6 2.4 2 1 0 2 2 2 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|385804346|ref|YP_005840746.1| - 3.3e-11 43.2 1.2 5.5e-11 42.4 0.2 1.8 2 0 0 2 2 2 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|385804346|ref|YP_005840746.1| - 2e-05 23.9 1.4 4.6e-05 22.7 0.1 2.0 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase C-terminus RNA_pol_Rpb6 PF01192.22 gi|385804347|ref|YP_005840747.1| - 1.1e-12 47.6 0.0 1.3e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.17 gi|385804348|ref|YP_005840748.1| - 7.7e-29 99.8 0.4 8.4e-29 99.7 0.4 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit DUF2655 PF10848.8 gi|385804348|ref|YP_005840748.1| - 0.1 12.9 0.1 0.15 12.4 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2655) Ribosomal_S9 PF00380.19 gi|385804349|ref|YP_005840749.1| - 6.8e-31 107.3 0.1 7.7e-31 107.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 gi|385804350|ref|YP_005840750.1| - 7.4e-07 29.5 0.0 0.00012 22.3 0.0 2.4 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18 PF17135.4 gi|385804351|ref|YP_005840751.1| - 3.1e-06 26.7 0.0 3.3e-06 26.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|385804351|ref|YP_005840751.1| - 5.1e-06 27.2 0.2 1.5e-05 25.7 0.2 1.7 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RNA_pol_A_bac PF01000.26 gi|385804352|ref|YP_005840752.1| - 2e-18 66.8 0.0 1.2e-17 64.3 0.0 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|385804352|ref|YP_005840752.1| - 6.5e-12 44.7 0.0 9.1e-12 44.2 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_S11 PF00411.19 gi|385804353|ref|YP_005840753.1| - 8.1e-49 164.6 1.9 1e-48 164.3 1.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 Ribosomal_L18p PF00861.22 gi|385804353|ref|YP_005840753.1| - 0.049 14.0 0.1 0.07 13.5 0.1 1.2 1 0 0 1 1 1 0 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast S4 PF01479.25 gi|385804354|ref|YP_005840754.1| - 2.7e-16 59.0 0.7 6.8e-15 54.5 0.0 2.4 2 0 0 2 2 2 1 S4 domain S4_2 PF13275.6 gi|385804354|ref|YP_005840754.1| - 0.11 12.3 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 S4 domain TyrRSs_C PF16714.5 gi|385804354|ref|YP_005840754.1| - 0.16 11.8 0.0 0.3 10.9 0.0 1.4 1 0 0 1 1 1 0 Tyrosyl-tRNA synthetase C-terminal domain Ribosomal_S13 PF00416.22 gi|385804355|ref|YP_005840755.1| - 2.7e-42 144.2 4.4 3.4e-42 143.9 4.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 STT3 PF02516.14 gi|385804356|ref|YP_005840756.1| - 4e-07 29.3 15.3 8.5e-07 28.3 14.6 1.8 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit GATase PF00117.28 gi|385804357|ref|YP_005840757.1| - 1.6e-18 67.1 0.0 2.3e-18 66.6 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|385804357|ref|YP_005840757.1| - 1.6e-05 24.8 0.0 0.0042 16.9 0.0 2.3 2 0 0 2 2 2 2 Peptidase C26 GATase_3 PF07685.14 gi|385804357|ref|YP_005840757.1| - 0.0063 16.1 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DDE_5 PF13546.6 gi|385804358|ref|YP_005840758.1| - 3.2e-26 92.3 0.0 4.7e-26 91.7 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|385804358|ref|YP_005840758.1| - 8.1e-16 58.3 0.1 2.1e-15 56.9 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|385804358|ref|YP_005840758.1| - 0.00013 21.3 0.5 0.00055 19.3 0.5 1.8 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|385804358|ref|YP_005840758.1| - 0.016 13.5 0.0 0.022 13.0 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 DDE_Tnp_1_6 PF13751.6 gi|385804358|ref|YP_005840758.1| - 0.14 12.4 0.0 0.31 11.3 0.0 1.6 1 0 0 1 1 1 0 Transposase DDE domain Radical_SAM PF04055.21 gi|385804359|ref|YP_005840759.1| - 6.4e-25 88.5 0.2 1.9e-24 86.9 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|385804359|ref|YP_005840759.1| - 4.8e-18 65.3 0.0 7.6e-18 64.7 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|385804359|ref|YP_005840759.1| - 3.8e-07 30.4 0.0 9e-07 29.2 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|385804359|ref|YP_005840759.1| - 2.8e-06 27.5 0.0 9e-06 25.8 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Imm75 PF15660.6 gi|385804359|ref|YP_005840759.1| - 0.0096 16.2 0.0 0.023 14.9 0.0 1.6 1 0 0 1 1 1 1 Putative Immunity protein 75 Cytochrom_C PF00034.21 gi|385804359|ref|YP_005840759.1| - 0.21 12.8 0.1 10 7.4 0.0 2.7 2 1 0 2 2 2 0 Cytochrome c ParA PF10609.9 gi|385804360|ref|YP_005840760.1| - 3.4e-96 321.4 0.0 4.4e-96 321.1 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|385804360|ref|YP_005840760.1| - 4.2e-13 49.5 0.0 1.5e-12 47.7 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain FeS_assembly_P PF01883.19 gi|385804360|ref|YP_005840760.1| - 6.1e-12 45.5 0.9 1.5e-11 44.3 0.4 1.9 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein AAA_31 PF13614.6 gi|385804360|ref|YP_005840760.1| - 3.2e-10 40.2 0.5 2e-08 34.4 0.5 2.2 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|385804360|ref|YP_005840760.1| - 1.8e-07 30.8 0.0 2.9e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|385804360|ref|YP_005840760.1| - 4.6e-05 22.8 2.3 0.00072 18.8 0.9 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 gi|385804360|ref|YP_005840760.1| - 0.00031 20.1 0.0 0.00052 19.4 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein AAA_26 PF13500.6 gi|385804360|ref|YP_005840760.1| - 0.0053 16.6 0.0 1.5 8.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain Fer4_NifH PF00142.18 gi|385804360|ref|YP_005840760.1| - 0.013 15.0 0.1 0.029 13.8 0.1 1.5 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 gi|385804360|ref|YP_005840760.1| - 0.02 14.4 0.0 0.045 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain CBP_BcsQ PF06564.12 gi|385804360|ref|YP_005840760.1| - 0.097 12.1 1.3 0.58 9.6 0.6 2.0 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ Polysacc_synt_2 PF02719.15 gi|385804361|ref|YP_005840761.1| - 2.4e-93 312.5 0.1 2.8e-93 312.3 0.1 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.21 gi|385804361|ref|YP_005840761.1| - 1.3e-27 96.9 0.1 2.1e-26 92.9 0.1 2.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|385804361|ref|YP_005840761.1| - 2.2e-24 86.0 0.2 4.5e-23 81.6 0.1 2.0 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|385804361|ref|YP_005840761.1| - 5.9e-22 78.5 0.0 2.8e-20 73.0 0.0 2.0 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|385804361|ref|YP_005840761.1| - 3.1e-15 56.5 1.7 1.8e-14 54.1 0.1 2.7 2 2 2 4 4 4 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|385804361|ref|YP_005840761.1| - 6.8e-13 48.4 0.0 8.9e-12 44.7 0.0 2.1 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|385804361|ref|YP_005840761.1| - 5.8e-11 42.0 0.8 2.4e-07 30.2 0.9 3.1 1 1 1 2 2 2 2 Male sterility protein NmrA PF05368.13 gi|385804361|ref|YP_005840761.1| - 2.5e-09 37.1 0.0 5.8e-09 35.9 0.0 1.6 1 1 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|385804361|ref|YP_005840761.1| - 3.5e-08 33.1 0.2 6.7e-08 32.2 0.2 1.5 1 0 0 1 1 1 1 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|385804361|ref|YP_005840761.1| - 2e-06 28.1 0.1 8.7e-06 26.0 0.0 2.0 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain KR PF08659.10 gi|385804361|ref|YP_005840761.1| - 0.00043 20.2 0.2 0.0014 18.6 0.2 1.8 1 1 0 1 1 1 1 KR domain Shikimate_DH PF01488.20 gi|385804361|ref|YP_005840761.1| - 0.0045 17.1 0.2 0.013 15.6 0.2 1.8 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase BAR PF03114.18 gi|385804361|ref|YP_005840761.1| - 0.007 16.0 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 BAR domain TrkA_N PF02254.18 gi|385804361|ref|YP_005840761.1| - 0.052 13.8 0.0 0.16 12.3 0.0 1.8 1 0 0 1 1 1 0 TrkA-N domain GDP_Man_Dehyd PF16363.5 gi|385804362|ref|YP_005840762.1| - 1.4e-55 189.1 0.0 1.8e-55 188.7 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|385804362|ref|YP_005840762.1| - 1.3e-52 178.6 0.0 1.7e-52 178.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|385804362|ref|YP_005840762.1| - 3e-19 69.1 0.0 4.2e-19 68.6 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|385804362|ref|YP_005840762.1| - 8.3e-17 61.2 0.0 1e-12 47.8 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.17 gi|385804362|ref|YP_005840762.1| - 1.2e-14 54.1 0.0 1.5e-14 53.8 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|385804362|ref|YP_005840762.1| - 3.2e-14 52.8 0.0 3.3e-13 49.4 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|385804362|ref|YP_005840762.1| - 2.3e-09 37.4 0.0 3.7e-09 36.7 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|385804362|ref|YP_005840762.1| - 1.9e-06 27.5 0.3 5.7e-05 22.7 0.1 2.2 2 0 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.13 gi|385804362|ref|YP_005840762.1| - 1.2e-05 25.1 0.0 0.1 12.1 0.1 2.1 2 0 0 2 2 2 2 NmrA-like family Sacchrp_dh_NADP PF03435.18 gi|385804362|ref|YP_005840762.1| - 0.00041 20.6 0.4 0.00094 19.4 0.1 1.8 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain KR PF08659.10 gi|385804362|ref|YP_005840762.1| - 0.067 13.1 0.1 0.12 12.2 0.1 1.5 1 1 0 1 1 1 0 KR domain DapB_N PF01113.20 gi|385804362|ref|YP_005840762.1| - 0.14 12.2 0.3 0.36 11.0 0.1 1.8 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus DegT_DnrJ_EryC1 PF01041.17 gi|385804363|ref|YP_005840763.1| - 1.8e-116 389.4 0.0 2.1e-116 389.2 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|385804363|ref|YP_005840763.1| - 6.7e-10 38.7 0.0 1.4e-09 37.6 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|385804363|ref|YP_005840763.1| - 8.2e-09 34.9 0.0 1e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|385804363|ref|YP_005840763.1| - 1.9e-06 27.4 0.1 5.1e-05 22.7 0.2 2.2 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|385804363|ref|YP_005840763.1| - 0.00016 20.3 0.0 0.00024 19.7 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.20 gi|385804363|ref|YP_005840763.1| - 0.0067 15.2 0.1 0.015 14.1 0.1 1.5 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain NeuB PF03102.14 gi|385804364|ref|YP_005840764.1| - 2.3e-83 279.3 0.0 2.8e-83 279.1 0.0 1.1 1 0 0 1 1 1 1 NeuB family SAF PF08666.12 gi|385804364|ref|YP_005840764.1| - 7.3e-06 26.5 0.0 2e-05 25.1 0.0 1.8 1 0 0 1 1 1 1 SAF domain PEP-utilizers_C PF02896.18 gi|385804365|ref|YP_005840765.1| - 3.1e-51 174.3 0.0 4.3e-51 173.8 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|385804365|ref|YP_005840765.1| - 3.4e-06 26.7 0.0 5.8e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain DUF3150 PF11348.8 gi|385804365|ref|YP_005840765.1| - 0.047 12.9 0.1 0.076 12.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3150) ATPgrasp_Ter PF15632.6 gi|385804366|ref|YP_005840766.1| - 2e-18 66.4 0.0 5.9e-18 64.9 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|385804366|ref|YP_005840766.1| - 8.7e-18 64.9 0.0 1.3e-17 64.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.6 gi|385804366|ref|YP_005840766.1| - 5.3e-08 32.6 0.0 7.6e-07 28.9 0.0 2.6 2 1 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|385804366|ref|YP_005840766.1| - 2.3e-07 30.5 0.0 8.3e-06 25.4 0.0 2.3 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.13 gi|385804366|ref|YP_005840766.1| - 1e-06 28.4 0.0 0.00048 19.7 0.0 2.4 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus TTL PF03133.15 gi|385804366|ref|YP_005840766.1| - 0.00021 20.5 0.0 0.0048 16.1 0.0 2.1 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family ATPgrasp_YheCD PF14398.6 gi|385804366|ref|YP_005840766.1| - 0.0014 17.9 0.1 0.027 13.7 0.0 2.1 1 1 0 2 2 2 1 YheC/D like ATP-grasp ATPgrasp_ST PF14397.6 gi|385804366|ref|YP_005840766.1| - 0.0019 17.5 0.0 0.58 9.4 0.0 2.3 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp GSH-S_ATP PF02955.16 gi|385804366|ref|YP_005840766.1| - 0.0043 16.5 0.0 0.0083 15.5 0.0 1.5 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp PF02222.22 gi|385804366|ref|YP_005840766.1| - 0.0051 16.4 0.0 0.012 15.3 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|385804366|ref|YP_005840766.1| - 0.07 12.7 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 RimK-like ATP-grasp domain Metallophos_2 PF12850.7 gi|385804367|ref|YP_005840767.1| - 7.7e-34 117.3 0.0 9.3e-34 117.0 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|385804367|ref|YP_005840767.1| - 1.6e-10 41.8 3.8 2.8e-09 37.8 3.8 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Glyco_trans_1_2 PF13524.6 gi|385804368|ref|YP_005840768.1| - 0.0093 16.3 0.8 0.028 14.8 0.1 2.1 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|385804368|ref|YP_005840768.1| - 0.043 14.3 0.0 0.07 13.6 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferases group 1 CTP_transf_3 PF02348.19 gi|385804369|ref|YP_005840769.1| - 1.8e-18 67.3 0.4 2.2e-18 67.0 0.4 1.1 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.7 gi|385804369|ref|YP_005840769.1| - 8.1e-06 26.3 0.1 1e-05 25.9 0.1 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF2064 PF09837.9 gi|385804369|ref|YP_005840769.1| - 2.7e-05 24.0 0.2 4.7e-05 23.2 0.2 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) YAcAr PF10686.9 gi|385804369|ref|YP_005840769.1| - 0.0011 18.9 0.6 0.023 14.6 0.1 2.4 2 0 0 2 2 2 1 YspA, cpYpsA-related SLOG family CofC PF01983.16 gi|385804369|ref|YP_005840769.1| - 0.063 12.4 1.0 0.11 11.7 0.5 1.7 2 1 0 2 2 2 0 Guanylyl transferase CofC like SWIM PF04434.17 gi|385804371|ref|YP_005840771.1| - 3.9e-07 29.6 1.5 6.9e-07 28.8 1.5 1.4 1 0 0 1 1 1 1 SWIM zinc finger DUF3253 PF11625.8 gi|385804371|ref|YP_005840771.1| - 0.17 12.1 2.4 20 5.5 0.2 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3253) TPR_14 PF13428.6 gi|385804371|ref|YP_005840771.1| - 0.19 12.6 17.7 10 7.2 0.0 6.7 5 1 1 6 6 6 0 Tetratricopeptide repeat TPR_7 PF13176.6 gi|385804371|ref|YP_005840771.1| - 0.2 11.8 7.1 8.5 6.7 0.0 5.2 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_19 PF14559.6 gi|385804371|ref|YP_005840771.1| - 0.21 12.1 6.0 13 6.4 0.0 4.5 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_12 PF13424.6 gi|385804371|ref|YP_005840771.1| - 0.33 11.3 0.1 0.33 11.3 0.1 5.0 5 1 1 6 6 6 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|385804371|ref|YP_005840771.1| - 7.3 7.5 7.7 2.1e+02 2.9 0.1 5.4 6 0 0 6 6 6 0 Tetratricopeptide repeat Cdc6_C PF09079.11 gi|385804372|ref|YP_005840772.1| - 7.3e-13 48.3 0.0 1.4e-12 47.4 0.0 1.5 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA PF00004.29 gi|385804372|ref|YP_005840772.1| - 1.7e-10 41.4 0.0 4.7e-10 40.0 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|385804372|ref|YP_005840772.1| - 5.2e-07 30.2 0.4 4.4e-06 27.2 0.1 2.5 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|385804372|ref|YP_005840772.1| - 3.5e-05 24.1 0.0 7.4e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|385804372|ref|YP_005840772.1| - 0.00024 21.1 0.0 0.00077 19.4 0.0 1.8 1 1 0 1 1 1 1 NACHT domain TniB PF05621.11 gi|385804372|ref|YP_005840772.1| - 0.0023 17.4 0.0 0.007 15.8 0.0 1.8 1 1 0 1 1 1 1 Bacterial TniB protein DUF815 PF05673.13 gi|385804372|ref|YP_005840772.1| - 0.0083 15.3 0.0 0.014 14.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Bac_DnaA PF00308.18 gi|385804372|ref|YP_005840772.1| - 0.012 15.5 0.0 0.27 11.0 0.0 2.2 2 0 0 2 2 2 0 Bacterial dnaA protein ResIII PF04851.15 gi|385804372|ref|YP_005840772.1| - 0.089 12.8 0.0 0.27 11.2 0.0 2.0 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|385804372|ref|YP_005840772.1| - 0.091 13.1 0.0 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|385804372|ref|YP_005840772.1| - 0.1 12.1 0.0 0.3 10.6 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|385804372|ref|YP_005840772.1| - 0.1 12.0 0.0 0.25 10.7 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI HTH_20 PF12840.7 gi|385804373|ref|YP_005840773.1| - 0.0011 18.9 0.0 0.0025 17.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|385804373|ref|YP_005840773.1| - 0.017 15.0 0.1 0.61 10.0 0.0 2.6 3 0 0 3 3 3 0 MarR family TrmB PF01978.19 gi|385804373|ref|YP_005840773.1| - 0.036 14.0 0.0 0.086 12.7 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|385804373|ref|YP_005840773.1| - 0.12 12.3 0.0 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Cdc6_C PF09079.11 gi|385804376|ref|YP_005840776.1| - 6.6e-13 48.5 0.0 1.6e-12 47.2 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|385804376|ref|YP_005840776.1| - 1.1e-10 41.9 0.0 3.2e-10 40.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.6 gi|385804376|ref|YP_005840776.1| - 2.9e-08 34.3 0.1 3.9e-07 30.6 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|385804376|ref|YP_005840776.1| - 6e-06 26.7 0.1 3.9e-05 24.1 0.1 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|385804376|ref|YP_005840776.1| - 0.00022 20.5 0.0 0.00037 19.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|385804376|ref|YP_005840776.1| - 0.00048 19.9 0.0 0.00098 18.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_5 PF07728.14 gi|385804376|ref|YP_005840776.1| - 0.0015 18.5 0.1 0.022 14.8 0.1 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|385804376|ref|YP_005840776.1| - 0.0027 17.4 0.0 0.0071 16.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain TsaE PF02367.17 gi|385804376|ref|YP_005840776.1| - 0.0027 17.7 0.0 0.0064 16.5 0.0 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|385804376|ref|YP_005840776.1| - 0.0036 17.7 0.0 0.02 15.2 0.0 2.3 2 0 0 2 2 2 1 RNA helicase DUF2075 PF09848.9 gi|385804376|ref|YP_005840776.1| - 0.004 16.4 0.0 0.0079 15.5 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) ResIII PF04851.15 gi|385804376|ref|YP_005840776.1| - 0.0044 17.0 0.1 0.015 15.3 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AvrD PF05655.11 gi|385804376|ref|YP_005840776.1| - 0.0045 16.4 0.0 0.0069 15.7 0.0 1.3 1 0 0 1 1 1 1 Pseudomonas avirulence D protein (AvrD) TniB PF05621.11 gi|385804376|ref|YP_005840776.1| - 0.0047 16.4 0.1 0.015 14.7 0.1 1.9 1 1 0 1 1 1 1 Bacterial TniB protein RuvB_N PF05496.12 gi|385804376|ref|YP_005840776.1| - 0.0071 16.1 0.1 0.086 12.6 0.0 2.4 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain Zeta_toxin PF06414.12 gi|385804376|ref|YP_005840776.1| - 0.017 14.4 0.0 0.04 13.2 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin AAA_2 PF07724.14 gi|385804376|ref|YP_005840776.1| - 0.025 14.7 0.0 0.071 13.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_19 PF13245.6 gi|385804376|ref|YP_005840776.1| - 0.044 14.1 1.3 0.5 10.7 1.3 2.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|385804376|ref|YP_005840776.1| - 0.044 13.7 0.0 0.088 12.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Sigma54_activ_2 PF14532.6 gi|385804376|ref|YP_005840776.1| - 0.075 13.1 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_32 PF13654.6 gi|385804376|ref|YP_005840776.1| - 0.081 11.7 0.4 6.8 5.3 0.3 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|385804376|ref|YP_005840776.1| - 0.099 12.8 0.0 0.3 11.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|385804376|ref|YP_005840776.1| - 0.12 11.8 0.0 1.1 8.6 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Mg_chelatase_C PF13335.6 gi|385804376|ref|YP_005840776.1| - 0.13 12.9 0.2 0.34 11.6 0.2 1.7 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI C-terminal AAA_7 PF12775.7 gi|385804376|ref|YP_005840776.1| - 0.16 11.5 0.0 0.31 10.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Acetyltransf_1 PF00583.25 gi|385804378|ref|YP_005840778.1| - 1.2e-16 60.9 0.1 1.5e-16 60.6 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|385804378|ref|YP_005840778.1| - 1.6e-12 47.5 0.7 2.4e-12 46.9 0.7 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|385804378|ref|YP_005840778.1| - 4.3e-11 43.1 0.1 6.4e-11 42.5 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|385804378|ref|YP_005840778.1| - 6.8e-07 29.2 0.2 2.5e-06 27.4 0.1 1.8 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|385804378|ref|YP_005840778.1| - 6.3e-05 23.0 0.1 0.00014 21.9 0.0 1.7 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 gi|385804378|ref|YP_005840778.1| - 0.00026 21.1 0.2 0.00041 20.5 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|385804378|ref|YP_005840778.1| - 0.031 14.0 0.1 0.043 13.5 0.1 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|385804378|ref|YP_005840778.1| - 0.037 14.1 0.0 0.075 13.1 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|385804378|ref|YP_005840778.1| - 0.1 12.6 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase BPD_transp_2 PF02653.16 gi|385804379|ref|YP_005840779.1| - 8.3e-34 117.0 43.4 8.3e-34 117.0 43.4 1.7 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component DUF2613 PF11021.8 gi|385804379|ref|YP_005840779.1| - 0.68 10.1 10.4 0.19 11.9 1.1 3.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2613) BPD_transp_2 PF02653.16 gi|385804380|ref|YP_005840780.1| - 4e-42 144.2 29.6 4e-42 144.2 29.6 1.6 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component PetG PF02529.15 gi|385804380|ref|YP_005840780.1| - 0.43 10.5 11.9 3.7 7.5 4.0 3.2 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit 5 ABC_tran PF00005.27 gi|385804381|ref|YP_005840781.1| - 1.8e-31 109.5 0.0 2.4e-31 109.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385804381|ref|YP_005840781.1| - 2.7e-11 43.8 6.3 2.1e-07 31.0 0.4 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|385804381|ref|YP_005840781.1| - 2.5e-10 40.0 0.1 5.6e-10 38.9 0.1 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 gi|385804381|ref|YP_005840781.1| - 9.1e-06 26.3 0.0 1.1e-05 26.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|385804381|ref|YP_005840781.1| - 3.4e-05 23.5 0.3 6.8e-05 22.5 0.3 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MukB PF04310.12 gi|385804381|ref|YP_005840781.1| - 0.00011 22.1 0.3 0.00018 21.4 0.3 1.3 1 0 0 1 1 1 1 MukB N-terminal SMC_N PF02463.19 gi|385804381|ref|YP_005840781.1| - 0.00032 20.2 0.1 0.019 14.4 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.12 gi|385804381|ref|YP_005840781.1| - 0.027 13.8 0.0 0.044 13.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_15 PF13175.6 gi|385804381|ref|YP_005840781.1| - 0.039 13.7 0.2 0.16 11.7 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|385804381|ref|YP_005840781.1| - 0.041 14.3 0.0 2.7 8.4 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|385804381|ref|YP_005840781.1| - 0.058 13.3 0.1 0.12 12.3 0.1 1.5 2 0 0 2 2 2 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|385804381|ref|YP_005840781.1| - 0.059 13.5 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|385804381|ref|YP_005840781.1| - 0.073 12.8 0.1 0.11 12.2 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|385804381|ref|YP_005840781.1| - 0.12 12.7 0.0 0.25 11.7 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_27 PF13514.6 gi|385804381|ref|YP_005840781.1| - 0.14 11.7 0.1 0.24 11.0 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|385804381|ref|YP_005840781.1| - 0.15 12.3 0.2 0.45 10.8 0.2 2.0 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|385804382|ref|YP_005840782.1| - 1.6e-31 109.6 0.0 2.4e-31 109.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385804382|ref|YP_005840782.1| - 8.4e-09 35.7 0.2 0.0031 17.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385804382|ref|YP_005840782.1| - 0.00022 20.8 1.5 0.0029 17.1 0.2 2.2 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|385804382|ref|YP_005840782.1| - 0.0036 17.0 0.1 0.007 16.1 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|385804382|ref|YP_005840782.1| - 0.0042 16.8 0.1 0.0077 16.0 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|385804382|ref|YP_005840782.1| - 0.0042 16.7 0.0 0.0071 16.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|385804382|ref|YP_005840782.1| - 0.0048 17.4 0.0 0.0073 16.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|385804382|ref|YP_005840782.1| - 0.0086 16.5 0.0 0.012 16.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain MutS_V PF00488.21 gi|385804382|ref|YP_005840782.1| - 0.011 15.8 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 0 MutS domain V AAA_22 PF13401.6 gi|385804382|ref|YP_005840782.1| - 0.032 14.5 0.2 0.12 12.6 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|385804382|ref|YP_005840782.1| - 0.036 13.8 0.0 0.11 12.2 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.6 gi|385804382|ref|YP_005840782.1| - 0.047 14.2 0.2 0.56 10.8 0.0 2.2 1 1 1 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|385804382|ref|YP_005840782.1| - 0.051 12.7 0.1 0.077 12.2 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.6 gi|385804382|ref|YP_005840782.1| - 0.15 12.3 0.2 0.23 11.6 0.2 1.5 1 1 0 1 1 1 0 AAA domain T3SS_LEE_assoc PF13327.6 gi|385804382|ref|YP_005840782.1| - 0.17 11.9 0.0 0.25 11.3 0.0 1.2 1 0 0 1 1 1 0 Type III secretion system subunit Spore_IV_A PF09547.10 gi|385804382|ref|YP_005840782.1| - 0.2 10.5 0.0 0.32 9.9 0.0 1.2 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) ParE_toxin PF05016.15 gi|385804383|ref|YP_005840783.1| - 4.8e-09 36.7 2.5 5.5e-09 36.5 2.5 1.0 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE DUF4211 PF13926.6 gi|385804383|ref|YP_005840783.1| - 0.13 12.3 0.0 0.14 12.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4211) RHH_1 PF01402.21 gi|385804384|ref|YP_005840784.1| - 4e-06 26.6 0.6 9.8e-06 25.3 0.0 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DNA_gyraseB PF00204.25 gi|385804384|ref|YP_005840784.1| - 0.015 14.8 0.0 0.02 14.4 0.0 1.2 1 0 0 1 1 1 0 DNA gyrase B DUF2064 PF09837.9 gi|385804386|ref|YP_005840786.1| - 1e-05 25.4 0.0 1.6e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) CofC PF01983.16 gi|385804386|ref|YP_005840786.1| - 0.053 12.7 0.1 2.8 7.0 0.1 2.1 1 1 0 1 1 1 0 Guanylyl transferase CofC like UDG PF03167.19 gi|385804387|ref|YP_005840787.1| - 7.8e-21 74.7 0.0 9e-21 74.5 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily NqrM PF04400.13 gi|385804387|ref|YP_005840787.1| - 0.072 12.9 0.3 0.13 12.1 0.3 1.3 1 0 0 1 1 1 0 (Na+)-NQR maturation NqrM NTP_transferase PF00483.23 gi|385804388|ref|YP_005840788.1| - 1.7e-27 96.6 0.0 2.1e-27 96.3 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|385804388|ref|YP_005840788.1| - 1.1e-11 45.3 0.1 1.5e-11 44.9 0.1 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|385804388|ref|YP_005840788.1| - 8.2e-07 29.0 0.3 1.8e-06 27.9 0.3 1.6 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|385804388|ref|YP_005840788.1| - 0.066 13.0 0.0 0.098 12.5 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 NTP_transferase PF00483.23 gi|385804389|ref|YP_005840789.1| - 1.5e-42 145.9 0.0 1.7e-42 145.7 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|385804389|ref|YP_005840789.1| - 7.7e-14 52.4 0.0 9.2e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|385804389|ref|YP_005840789.1| - 0.00023 21.0 0.0 0.0011 18.7 0.0 2.0 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GDP_Man_Dehyd PF16363.5 gi|385804390|ref|YP_005840790.1| - 1.2e-65 222.1 0.0 1.4e-65 221.9 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|385804390|ref|YP_005840790.1| - 1.9e-62 210.9 0.0 2.4e-62 210.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|385804390|ref|YP_005840790.1| - 1.4e-24 86.6 0.0 1.8e-24 86.2 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|385804390|ref|YP_005840790.1| - 6.7e-17 61.5 0.2 8.5e-17 61.2 0.2 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|385804390|ref|YP_005840790.1| - 9.5e-15 54.5 0.0 5.2e-14 52.1 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|385804390|ref|YP_005840790.1| - 2.3e-10 40.1 0.1 1.3e-09 37.6 0.1 2.3 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|385804390|ref|YP_005840790.1| - 2.4e-09 37.3 0.1 2.9e-08 33.8 0.1 2.1 1 1 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|385804390|ref|YP_005840790.1| - 2.7e-05 23.7 1.3 0.00031 20.3 0.4 2.9 2 1 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.13 gi|385804390|ref|YP_005840790.1| - 0.0013 18.3 0.2 0.0027 17.3 0.2 1.6 1 1 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|385804390|ref|YP_005840790.1| - 0.002 18.1 0.0 0.011 15.7 0.0 2.0 1 1 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 gi|385804390|ref|YP_005840790.1| - 0.072 13.0 0.1 0.22 11.4 0.0 1.9 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|385804390|ref|YP_005840790.1| - 0.088 13.0 0.0 0.19 11.9 0.0 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Peripla_BP_6 PF13458.6 gi|385804391|ref|YP_005840791.1| - 2e-26 93.5 6.8 3.8e-19 69.6 1.0 2.3 2 0 0 2 2 2 2 Periplasmic binding protein ANF_receptor PF01094.28 gi|385804391|ref|YP_005840791.1| - 8.5e-16 58.0 0.3 1.1e-09 37.8 0.3 2.1 2 0 0 2 2 2 2 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|385804391|ref|YP_005840791.1| - 0.0012 17.9 0.2 0.14 11.1 0.1 2.2 2 0 0 2 2 2 2 Periplasmic binding protein domain DUF5615 PF18480.1 gi|385804392|ref|YP_005840792.1| - 1.7e-08 34.1 0.1 2.4e-08 33.6 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) PIN_10 PF18478.1 gi|385804392|ref|YP_005840792.1| - 0.0034 17.6 0.0 0.0053 17.0 0.0 1.3 1 0 0 1 1 1 1 PIN like domain DUF433 PF04255.14 gi|385804393|ref|YP_005840793.1| - 8.6e-09 35.1 0.1 1.6e-08 34.3 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF433) DDE_5 PF13546.6 gi|385804394|ref|YP_005840794.1| - 3.2e-26 92.3 0.0 4.7e-26 91.7 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|385804394|ref|YP_005840794.1| - 8.1e-16 58.3 0.1 2.1e-15 56.9 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|385804394|ref|YP_005840794.1| - 0.00013 21.3 0.5 0.00055 19.3 0.5 1.8 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|385804394|ref|YP_005840794.1| - 0.016 13.5 0.0 0.022 13.0 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 DDE_Tnp_1_6 PF13751.6 gi|385804394|ref|YP_005840794.1| - 0.14 12.4 0.0 0.31 11.3 0.0 1.6 1 0 0 1 1 1 0 Transposase DDE domain DUF2745 PF10922.8 gi|385804396|ref|YP_005840796.1| - 0.069 13.4 0.9 0.6 10.4 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2745) Bac_transf PF02397.16 gi|385804397|ref|YP_005840797.1| - 5.6e-60 202.1 0.4 1e-59 201.3 0.0 1.6 2 0 0 2 2 2 1 Bacterial sugar transferase DUF1970 PF09301.10 gi|385804397|ref|YP_005840797.1| - 4e-08 33.5 0.0 7.6e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1970) DUF3995 PF13160.6 gi|385804397|ref|YP_005840797.1| - 6.8 7.1 10.6 0.87 9.9 0.3 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF3995) DDE_3 PF13358.6 gi|529167408|ref|YP_005840799.2| - 1.6e-26 92.8 0.0 4.6e-26 91.3 0.0 1.7 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_32 PF13565.6 gi|529167408|ref|YP_005840799.2| - 6.5e-12 45.9 0.1 3.7e-11 43.5 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.6 gi|529167408|ref|YP_005840799.2| - 6.6e-10 38.5 1.6 4e-09 36.0 0.1 2.9 3 0 0 3 3 3 1 Winged helix-turn helix HTH_28 PF13518.6 gi|529167408|ref|YP_005840799.2| - 2.8e-08 33.7 0.2 2.6e-07 30.6 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|529167408|ref|YP_005840799.2| - 1.3e-07 31.2 0.1 5.3e-07 29.3 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|529167408|ref|YP_005840799.2| - 4.2e-06 26.7 0.2 1e-05 25.4 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn helix Terminase_5 PF06056.12 gi|529167408|ref|YP_005840799.2| - 0.0032 17.3 0.1 0.0087 15.9 0.1 1.7 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) rve PF00665.26 gi|529167408|ref|YP_005840799.2| - 0.0034 17.6 0.0 0.0098 16.1 0.0 1.7 1 0 0 1 1 1 1 Integrase core domain Glycos_transf_1 PF00534.20 gi|385804400|ref|YP_005840800.1| - 2.4e-31 108.6 0.0 3.8e-31 107.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|385804400|ref|YP_005840800.1| - 1.7e-27 96.4 0.0 2.7e-27 95.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|385804400|ref|YP_005840800.1| - 7.5e-27 94.4 0.4 1.3e-26 93.7 0.2 1.4 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|385804400|ref|YP_005840800.1| - 1e-19 71.6 0.1 9.5e-19 68.4 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|385804400|ref|YP_005840800.1| - 1.9e-07 31.2 0.0 3.1e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like DUF3492 PF11997.8 gi|385804400|ref|YP_005840800.1| - 0.00078 19.3 0.0 0.77 9.4 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3492) Glycos_transf_N PF04413.16 gi|385804400|ref|YP_005840800.1| - 0.0032 17.2 0.0 0.12 12.0 0.0 2.5 1 1 1 2 2 2 1 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Glyco_transf_5 PF08323.11 gi|385804400|ref|YP_005840800.1| - 0.14 11.9 0.5 0.78 9.4 0.1 2.0 1 1 1 2 2 2 0 Starch synthase catalytic domain Asn_synthase PF00733.21 gi|385804401|ref|YP_005840801.1| - 1.5e-93 314.3 0.8 2e-93 313.9 0.8 1.1 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 gi|385804401|ref|YP_005840801.1| - 3.6e-43 146.4 0.2 1.4e-42 144.5 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|385804401|ref|YP_005840801.1| - 1.3e-39 135.4 0.0 3e-39 134.3 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF3700 PF12481.8 gi|385804401|ref|YP_005840801.1| - 0.0056 16.2 0.1 0.018 14.5 0.1 1.8 1 1 0 1 1 1 1 Aluminium induced protein QueC PF06508.13 gi|385804401|ref|YP_005840801.1| - 0.095 12.2 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC DDE_Tnp_IS66 PF03050.14 gi|385804402|ref|YP_005840802.1| - 4.1e-49 167.6 0.6 6.1e-49 167.0 0.6 1.3 1 0 0 1 1 1 1 Transposase IS66 family DDE_Tnp_IS240 PF13610.6 gi|385804402|ref|YP_005840802.1| - 0.00052 20.3 0.4 0.14 12.4 0.0 2.9 3 0 0 3 3 3 1 DDE domain Csm1_N PF18504.1 gi|385804402|ref|YP_005840802.1| - 0.00086 19.6 2.6 0.0017 18.6 0.3 2.5 2 0 0 2 2 2 1 Csm1 N-terminal domain SOGA PF11365.8 gi|385804402|ref|YP_005840802.1| - 0.021 16.0 0.7 0.021 16.0 0.7 2.3 2 0 0 2 2 2 0 Protein SOGA DUF2357 PF09823.9 gi|385804402|ref|YP_005840802.1| - 0.1 11.8 1.5 0.2 10.9 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF2357) CCD48 PF15799.5 gi|385804402|ref|YP_005840802.1| - 0.17 10.1 5.7 0.069 11.5 2.5 1.7 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 48 SlyX PF04102.12 gi|385804402|ref|YP_005840802.1| - 0.41 11.3 9.4 17 6.1 5.0 3.4 2 1 0 2 2 2 0 SlyX DUF3450 PF11932.8 gi|385804402|ref|YP_005840802.1| - 0.44 9.8 6.7 2.4 7.4 2.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) RP-C_C PF11800.8 gi|385804402|ref|YP_005840802.1| - 0.66 10.0 5.7 1.6 8.8 0.9 2.3 2 0 0 2 2 2 0 Replication protein C C-terminal region AF-4 PF05110.13 gi|385804402|ref|YP_005840802.1| - 1.3 7.0 6.1 1.9 6.5 6.1 1.1 1 0 0 1 1 1 0 AF-4 proto-oncoprotein ABC_tran_CTD PF16326.5 gi|385804402|ref|YP_005840802.1| - 1.9 8.8 8.4 5.2 7.4 0.8 3.2 3 0 0 3 3 3 0 ABC transporter C-terminal domain Sulfatase PF00884.23 gi|385804403|ref|YP_005840803.1| - 4.7e-38 131.3 0.1 6.5e-38 130.9 0.1 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|385804403|ref|YP_005840803.1| - 9.3e-06 25.5 0.4 0.0042 16.7 0.2 2.5 2 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Glycos_transf_1 PF00534.20 gi|385804404|ref|YP_005840804.1| - 1.8e-33 115.5 0.0 6.2e-33 113.7 0.0 1.8 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|385804404|ref|YP_005840804.1| - 3.1e-26 92.4 0.0 7.5e-26 91.1 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|385804404|ref|YP_005840804.1| - 4.5e-13 49.4 0.0 8.6e-13 48.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|385804404|ref|YP_005840804.1| - 3.4e-05 23.9 0.1 6.9e-05 22.9 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase Family 4 PMT_2 PF13231.6 gi|385804405|ref|YP_005840805.1| - 6e-05 23.3 18.0 6e-05 23.3 18.0 2.4 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DDE_Tnp_1 PF01609.21 gi|385804406|ref|YP_005840806.1| - 1.1e-19 71.0 0.0 1.5e-19 70.5 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|385804406|ref|YP_005840806.1| - 0.0035 17.3 0.0 0.0086 16.1 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|385804407|ref|YP_005840807.1| - 0.032 13.9 0.0 0.049 13.3 0.0 1.4 1 1 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1 PF01609.21 gi|385804408|ref|YP_005840808.1| - 1.3e-07 31.5 0.2 2.1e-07 30.8 0.2 1.4 1 0 0 1 1 1 1 Transposase DDE domain PSP PF04046.16 gi|385804408|ref|YP_005840808.1| - 0.089 12.7 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 PSP Glycos_transf_1 PF00534.20 gi|385804409|ref|YP_005840809.1| - 9.8e-26 90.3 0.0 4.7e-25 88.1 0.0 1.9 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|385804409|ref|YP_005840809.1| - 7.6e-21 74.9 0.0 1.4e-20 74.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|385804409|ref|YP_005840809.1| - 5.7e-11 42.7 0.0 2.3e-10 40.7 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|385804409|ref|YP_005840809.1| - 4.3e-05 24.0 0.0 0.00028 21.4 0.0 2.2 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|385804409|ref|YP_005840809.1| - 0.0038 17.3 0.0 0.026 14.6 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|385804409|ref|YP_005840809.1| - 0.043 14.2 0.0 0.081 13.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferases group 1 Methyltransf_21 PF05050.12 gi|385804410|ref|YP_005840810.1| - 2.9e-20 73.0 0.0 3.9e-20 72.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|385804410|ref|YP_005840810.1| - 1.6e-05 24.7 0.0 2.3e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein V_cholerae_RfbT PF05575.11 gi|385804410|ref|YP_005840810.1| - 0.00037 19.9 0.0 0.00074 18.9 0.0 1.5 1 1 0 1 1 1 1 Vibrio cholerae RfbT protein Methyltr_RsmB-F PF01189.17 gi|385804410|ref|YP_005840810.1| - 0.0033 17.1 0.0 0.0064 16.2 0.0 1.4 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F dCache_2 PF08269.11 gi|385804410|ref|YP_005840810.1| - 0.0065 15.7 0.0 0.0088 15.3 0.0 1.2 1 0 0 1 1 1 1 Cache domain Chordopox_A20R PF05941.13 gi|385804410|ref|YP_005840810.1| - 0.012 14.6 0.0 0.017 14.1 0.0 1.1 1 0 0 1 1 1 0 Chordopoxvirus A20R protein MTS PF05175.14 gi|385804410|ref|YP_005840810.1| - 0.029 13.9 0.0 0.04 13.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain MGTL PF17059.5 gi|385804410|ref|YP_005840810.1| - 4.2 7.3 4.0 5.5 7.0 1.4 2.3 2 0 0 2 2 2 0 MgtA leader peptide DDE_5 PF13546.6 gi|385804412|ref|YP_005840812.1| - 2e-26 93.0 0.0 2.8e-26 92.5 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1 PF01609.21 gi|385804412|ref|YP_005840812.1| - 9.1e-16 58.1 0.1 2.4e-15 56.8 0.1 1.8 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|385804412|ref|YP_005840812.1| - 0.00023 20.5 0.4 0.001 18.4 0.4 1.8 1 1 0 1 1 1 1 Archaeal putative transposase ISC1217 DDE_Tnp_1_4 PF13701.6 gi|385804412|ref|YP_005840812.1| - 0.015 13.5 0.0 0.022 13.1 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain group 1 DDE_Tnp_1_6 PF13751.6 gi|385804412|ref|YP_005840812.1| - 0.14 12.4 0.0 0.31 11.3 0.0 1.6 1 0 0 1 1 1 0 Transposase DDE domain Epimerase_2 PF02350.19 gi|385804414|ref|YP_005840814.1| - 0.0053 15.6 0.0 1.2 8.0 0.0 2.2 2 0 0 2 2 2 2 UDP-N-acetylglucosamine 2-epimerase DUF354 PF04007.12 gi|385804414|ref|YP_005840814.1| - 0.013 14.6 0.0 0.021 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF354) RHH_1 PF01402.21 gi|385804415|ref|YP_005840815.1| - 9e-05 22.3 3.9 0.00018 21.3 1.4 2.5 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|385804415|ref|YP_005840815.1| - 0.017 15.0 0.0 0.044 13.8 0.0 1.6 1 1 0 1 1 1 0 Ribbon-helix-helix domain DEK_C PF08766.11 gi|385804415|ref|YP_005840815.1| - 0.034 14.1 0.7 0.054 13.4 0.7 1.4 1 0 0 1 1 1 0 DEK C terminal domain RIF5_SNase_2 PF18189.1 gi|385804415|ref|YP_005840815.1| - 0.089 12.6 0.1 0.097 12.5 0.1 1.1 1 0 0 1 1 1 0 TbRIF5 SNase domain 2 Capsule_synth PF05159.14 gi|385804417|ref|YP_005840817.1| - 1.4e-07 31.2 0.0 2.4e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Capsule polysaccharide biosynthesis protein DUF4330 PF14221.6 gi|385804418|ref|YP_005840818.1| - 5.2e-31 108.1 13.7 5.6e-15 55.9 0.0 4.8 3 2 1 4 4 4 4 Domain of unknown function (DUF4330) HlyD_3 PF13437.6 gi|385804418|ref|YP_005840818.1| - 0.5 11.1 7.6 2.6 8.8 0.0 4.4 4 1 0 4 4 4 0 HlyD family secretion protein MlaD PF02470.20 gi|385804418|ref|YP_005840818.1| - 0.88 9.9 7.1 0.22 11.9 0.4 3.4 3 2 0 3 3 3 0 MlaD protein BacA PF02673.18 gi|385804420|ref|YP_005840820.1| - 3.6e-44 151.4 15.8 4.3e-44 151.1 15.8 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA HTH_11 PF08279.12 gi|385804421|ref|YP_005840821.1| - 0.00016 21.5 0.1 0.0029 17.5 0.0 2.3 2 0 0 2 2 2 1 HTH domain HTH_5 PF01022.20 gi|385804421|ref|YP_005840821.1| - 0.00027 20.7 0.0 0.0098 15.7 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|385804421|ref|YP_005840821.1| - 0.00048 19.9 0.1 0.001 18.9 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|385804421|ref|YP_005840821.1| - 0.00051 19.8 0.1 0.0012 18.6 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain Ribosomal_S25 PF03297.15 gi|385804421|ref|YP_005840821.1| - 0.0036 17.5 0.0 0.0063 16.7 0.0 1.4 1 0 0 1 1 1 1 S25 ribosomal protein DUF2096 PF09869.9 gi|385804421|ref|YP_005840821.1| - 0.012 15.7 0.3 1.1 9.3 0.0 2.7 1 1 2 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2096) HTH_Tnp_ISL3 PF13542.6 gi|385804421|ref|YP_005840821.1| - 0.014 14.8 0.2 0.86 9.1 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.6 gi|385804421|ref|YP_005840821.1| - 0.018 14.8 0.2 0.17 11.7 0.1 2.6 2 0 0 2 2 2 0 Homeodomain-like domain HTH_20 PF12840.7 gi|385804421|ref|YP_005840821.1| - 0.018 15.1 0.0 0.061 13.4 0.0 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|385804421|ref|YP_005840821.1| - 0.019 14.7 0.0 0.068 12.9 0.0 1.9 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 gi|385804421|ref|YP_005840821.1| - 0.019 15.3 0.0 0.05 13.9 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_40 PF14493.6 gi|385804421|ref|YP_005840821.1| - 0.021 15.3 0.3 0.066 13.7 0.3 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain DUF4423 PF14394.6 gi|385804421|ref|YP_005840821.1| - 0.032 14.0 0.1 0.16 11.7 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) DUF742 PF05331.11 gi|385804421|ref|YP_005840821.1| - 0.034 13.9 0.1 0.052 13.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) FaeA PF04703.12 gi|385804421|ref|YP_005840821.1| - 0.058 13.8 0.0 0.15 12.5 0.0 1.6 1 0 0 1 1 1 0 FaeA-like protein MarR_2 PF12802.7 gi|385804421|ref|YP_005840821.1| - 0.069 13.1 0.3 0.27 11.1 0.1 2.0 2 1 0 2 2 2 0 MarR family GntR PF00392.21 gi|385804421|ref|YP_005840821.1| - 0.1 12.3 0.2 0.3 10.8 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family DUF86 PF01934.17 gi|385804422|ref|YP_005840822.1| - 4.4e-11 42.7 0.2 5.3e-11 42.4 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 Zmiz1_N PF18028.1 gi|385804422|ref|YP_005840822.1| - 0.029 14.7 0.0 0.033 14.5 0.0 1.2 1 0 0 1 1 1 0 Zmiz1 N-terminal tetratricopeptide repeat domain Phage_TAC_10 PF10963.8 gi|385804422|ref|YP_005840822.1| - 0.1 12.8 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 Phage tail assembly chaperone HTH_40 PF14493.6 gi|385804423|ref|YP_005840823.1| - 0.011 16.2 0.1 0.028 14.9 0.1 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain rve_3 PF13683.6 gi|385804423|ref|YP_005840823.1| - 0.026 14.3 1.2 0.11 12.3 0.1 2.3 1 1 1 2 2 2 0 Integrase core domain GntR PF00392.21 gi|385804423|ref|YP_005840823.1| - 0.026 14.2 0.1 0.048 13.3 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family RP-C PF03428.13 gi|385804423|ref|YP_005840823.1| - 0.026 14.2 0.8 0.5 10.0 0.0 2.2 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_20 PF12840.7 gi|385804423|ref|YP_005840823.1| - 0.034 14.2 0.6 0.1 12.7 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|385804423|ref|YP_005840823.1| - 0.073 12.9 0.2 0.18 11.6 0.2 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain U1snRNP70_N PF12220.8 gi|385804423|ref|YP_005840823.1| - 0.096 13.3 0.8 0.21 12.2 0.3 1.8 2 0 0 2 2 2 0 U1 small nuclear ribonucleoprotein of 70kDa MW N terminal HTH_DeoR PF08220.12 gi|385804423|ref|YP_005840823.1| - 0.098 12.4 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain YqaH PF17448.2 gi|385804423|ref|YP_005840823.1| - 0.11 12.8 0.0 0.23 11.8 0.0 1.6 1 1 0 1 1 1 0 Uncharacterized YqaH-like MazE_antitoxin PF04014.18 gi|385804426|ref|YP_005840826.1| - 3.2e-08 33.3 0.1 4.3e-08 32.9 0.1 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|385804426|ref|YP_005840826.1| - 0.0035 17.8 0.0 0.0042 17.5 0.0 1.1 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin TrmB PF01978.19 gi|385804428|ref|YP_005840828.1| - 7.3e-09 35.4 0.0 6e-06 26.1 0.1 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|385804428|ref|YP_005840828.1| - 4.1e-08 33.2 0.1 2.4e-05 24.3 0.0 3.2 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|385804428|ref|YP_005840828.1| - 4.6e-08 33.0 0.0 0.0057 16.7 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn helix HTH_5 PF01022.20 gi|385804428|ref|YP_005840828.1| - 2e-07 30.8 0.0 0.00012 21.9 0.0 2.8 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|385804428|ref|YP_005840828.1| - 8.2e-07 28.7 0.7 0.065 13.0 0.1 2.8 3 0 0 3 3 3 2 IclR helix-turn-helix domain MarR PF01047.22 gi|385804428|ref|YP_005840828.1| - 9.7e-06 25.4 0.0 0.0072 16.2 0.0 2.6 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|385804428|ref|YP_005840828.1| - 1.2e-05 25.1 0.1 0.01 15.7 0.0 2.4 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.6 gi|385804428|ref|YP_005840828.1| - 2.5e-05 23.7 0.0 0.17 11.5 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 gi|385804428|ref|YP_005840828.1| - 4.1e-05 23.6 0.0 0.24 11.6 0.0 2.7 2 1 1 3 3 3 2 Helix-turn-helix domain HTH_11 PF08279.12 gi|385804428|ref|YP_005840828.1| - 0.00014 21.7 0.1 0.012 15.6 0.0 2.3 2 0 0 2 2 2 1 HTH domain Rrf2 PF02082.20 gi|385804428|ref|YP_005840828.1| - 0.00023 21.5 0.0 0.066 13.6 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator HTH_36 PF13730.6 gi|385804428|ref|YP_005840828.1| - 0.00036 20.4 0.0 0.0011 18.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain PadR PF03551.14 gi|385804428|ref|YP_005840828.1| - 0.00071 19.5 0.1 0.013 15.5 0.0 2.8 4 0 0 4 4 4 1 Transcriptional regulator PadR-like family HTH_7 PF02796.15 gi|385804428|ref|YP_005840828.1| - 0.0011 19.0 0.2 1.2 9.2 0.0 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|385804428|ref|YP_005840828.1| - 0.0022 17.7 0.0 2.5 8.0 0.0 2.4 2 0 0 2 2 2 2 Homeodomain-like domain FUR PF01475.19 gi|385804428|ref|YP_005840828.1| - 0.0039 17.3 0.1 0.012 15.8 0.1 1.8 1 1 1 2 2 2 1 Ferric uptake regulator family HTH_17 PF12728.7 gi|385804428|ref|YP_005840828.1| - 0.01 16.0 0.2 2.7 8.3 0.0 2.7 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|385804428|ref|YP_005840828.1| - 0.013 15.2 0.0 0.25 11.1 0.0 2.4 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_27 PF13463.6 gi|385804428|ref|YP_005840828.1| - 0.021 15.3 0.0 0.17 12.4 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain TetR_N PF00440.23 gi|385804428|ref|YP_005840828.1| - 0.033 14.0 0.5 4.7 7.1 0.1 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family FaeA PF04703.12 gi|385804428|ref|YP_005840828.1| - 0.086 13.2 0.1 0.19 12.1 0.1 1.5 1 0 0 1 1 1 0 FaeA-like protein Fe_dep_repress PF01325.19 gi|385804428|ref|YP_005840828.1| - 0.11 12.7 0.6 0.73 10.1 0.1 2.5 3 0 0 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain DUF2513 PF10711.9 gi|385804428|ref|YP_005840828.1| - 0.16 12.3 0.0 0.28 11.5 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) MazE_antitoxin PF04014.18 gi|385804429|ref|YP_005840829.1| - 1.8e-08 34.1 0.1 3.2e-08 33.3 0.1 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|385804429|ref|YP_005840829.1| - 0.00041 20.7 0.0 0.00053 20.4 0.0 1.2 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin Peptidase_S24 PF00717.23 gi|385804429|ref|YP_005840829.1| - 0.081 12.9 0.0 0.098 12.6 0.0 1.2 1 0 0 1 1 1 0 Peptidase S24-like PIN PF01850.21 gi|385804430|ref|YP_005840830.1| - 0.0001 22.8 0.0 0.00012 22.5 0.0 1.1 1 0 0 1 1 1 1 PIN domain MarR_2 PF12802.7 gi|385804431|ref|YP_005840831.1| - 0.018 14.9 0.1 0.03 14.2 0.1 1.3 1 0 0 1 1 1 0 MarR family FaeA PF04703.12 gi|385804431|ref|YP_005840831.1| - 0.039 14.3 0.0 0.055 13.8 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein HTH_DeoR PF08220.12 gi|385804431|ref|YP_005840831.1| - 0.078 12.7 0.1 0.13 12.1 0.1 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain NTP_transf_2 PF01909.23 gi|385804433|ref|YP_005840833.1| - 7.5e-18 64.6 0.1 8.1e-18 64.5 0.1 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|385804433|ref|YP_005840833.1| - 5.3e-12 45.7 0.0 5.7e-12 45.6 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|385804433|ref|YP_005840833.1| - 0.034 14.0 0.0 0.039 13.8 0.0 1.1 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 Adenyl_cycl_N PF12633.7 gi|385804433|ref|YP_005840833.1| - 0.057 13.3 0.0 0.062 13.2 0.0 1.1 1 0 0 1 1 1 0 Adenylate cyclase NT domain MdcG PF10620.9 gi|385804433|ref|YP_005840833.1| - 0.11 12.2 0.1 0.15 11.8 0.1 1.4 1 1 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG DUF86 PF01934.17 gi|385804434|ref|YP_005840834.1| - 5.7e-28 97.2 0.1 6.4e-28 97.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 EnY2 PF10163.9 gi|385804434|ref|YP_005840834.1| - 0.11 12.8 0.2 0.22 11.9 0.2 1.4 1 0 0 1 1 1 0 Transcription factor e(y)2 PIN PF01850.21 gi|385804436|ref|YP_005840836.1| - 2.7e-10 40.8 0.2 4.7e-10 40.0 0.2 1.3 1 1 0 1 1 1 1 PIN domain Polbeta PF18765.1 gi|385804437|ref|YP_005840837.1| - 3.7e-12 46.2 0.1 5.1e-12 45.7 0.1 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|385804437|ref|YP_005840837.1| - 0.016 15.5 0.2 0.019 15.2 0.2 1.4 1 1 0 1 1 1 0 Nucleotidyltransferase domain HTH_45 PF14947.6 gi|385804440|ref|YP_005840840.1| - 0.00013 21.9 0.0 0.00019 21.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix Mrr_N PF14338.6 gi|385804440|ref|YP_005840840.1| - 0.03 14.4 0.0 0.068 13.3 0.0 1.6 1 1 1 2 2 2 0 Mrr N-terminal domain RepL PF05732.11 gi|385804440|ref|YP_005840840.1| - 0.099 12.1 0.0 0.1 12.1 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) DUF433 PF04255.14 gi|385804441|ref|YP_005840841.1| - 1.6e-16 59.9 0.1 1.9e-16 59.7 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF433) Polbeta PF18765.1 gi|385804443|ref|YP_005840843.1| - 7.7e-14 51.5 0.0 1e-13 51.2 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|385804443|ref|YP_005840843.1| - 2.8e-06 27.5 0.1 3.8e-06 27.1 0.1 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.17 gi|385804444|ref|YP_005840844.1| - 1.5e-06 28.1 0.1 1.7e-06 27.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 SMK-1 PF04802.15 gi|385804444|ref|YP_005840844.1| - 0.043 13.6 0.0 0.047 13.5 0.0 1.2 1 0 0 1 1 1 0 Component of IIS longevity pathway SMK-1 DUF86 PF01934.17 gi|385804445|ref|YP_005840845.1| - 1.4e-11 44.2 0.1 1.6e-11 44.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 Tyosinase_C PF18132.1 gi|385804445|ref|YP_005840845.1| - 0.053 14.2 0.0 0.059 14.0 0.0 1.1 1 0 0 1 1 1 0 Tyosinase C-terminal domain VAPB_antitox PF02697.14 gi|385804448|ref|YP_005840848.1| - 8.3e-12 45.7 0.4 1.2e-11 45.2 0.4 1.3 1 1 0 1 1 1 1 Putative antitoxin DUF433 PF04255.14 gi|385804449|ref|YP_005840849.1| - 2.7e-15 56.0 0.0 3.7e-15 55.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF433) DUF4286 PF14114.6 gi|385804451|ref|YP_005840851.1| - 0.11 13.0 0.0 0.15 12.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4286) HTH_20 PF12840.7 gi|385804452|ref|YP_005840852.1| - 6.4e-05 22.9 0.1 0.00011 22.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|385804452|ref|YP_005840852.1| - 0.0021 17.9 0.1 0.0036 17.1 0.1 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|385804452|ref|YP_005840852.1| - 0.0031 17.4 0.0 0.0051 16.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|385804452|ref|YP_005840852.1| - 0.0097 16.4 0.0 0.015 15.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_1 PF00126.27 gi|385804452|ref|YP_005840852.1| - 0.022 14.7 0.0 0.036 14.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Bac_DNA_binding PF00216.21 gi|385804452|ref|YP_005840852.1| - 0.064 13.5 0.1 0.19 11.9 0.0 1.7 2 0 0 2 2 2 0 Bacterial DNA-binding protein HU-CCDC81_bac_2 PF18175.1 gi|385804452|ref|YP_005840852.1| - 0.15 12.0 0.1 0.31 10.9 0.1 1.5 1 0 0 1 1 1 0 CCDC81-like prokaryotic HU domain 2 SH3_1 PF00018.28 gi|385804455|ref|YP_005840855.1| - 0.025 14.2 0.1 0.056 13.1 0.1 1.6 1 0 0 1 1 1 0 SH3 domain HTH_24 PF13412.6 gi|385804456|ref|YP_005840856.1| - 2.6e-05 23.7 0.0 3.5e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|385804456|ref|YP_005840856.1| - 6.8e-05 22.8 0.0 9.5e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|385804456|ref|YP_005840856.1| - 0.00016 21.8 0.0 0.00022 21.4 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|385804456|ref|YP_005840856.1| - 0.00051 19.9 0.0 0.00066 19.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|385804456|ref|YP_005840856.1| - 0.00082 19.2 0.0 0.0011 18.8 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|385804456|ref|YP_005840856.1| - 0.00088 19.0 0.0 0.0012 18.6 0.0 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain FaeA PF04703.12 gi|385804456|ref|YP_005840856.1| - 0.00092 19.5 0.0 0.0011 19.3 0.0 1.1 1 0 0 1 1 1 1 FaeA-like protein HTH_30 PF13556.6 gi|385804456|ref|YP_005840856.1| - 0.0013 18.5 0.0 0.0018 18.1 0.0 1.2 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_10 PF04967.12 gi|385804456|ref|YP_005840856.1| - 0.0025 17.6 0.0 0.0041 16.9 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_AsnC-type PF13404.6 gi|385804456|ref|YP_005840856.1| - 0.0041 16.9 0.1 0.0058 16.4 0.1 1.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_1 PF00126.27 gi|385804456|ref|YP_005840856.1| - 0.0058 16.6 0.0 0.0088 16.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR PF01047.22 gi|385804456|ref|YP_005840856.1| - 0.0058 16.5 0.0 0.0075 16.2 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|385804456|ref|YP_005840856.1| - 0.029 14.2 0.0 0.038 13.9 0.0 1.1 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.16 gi|385804456|ref|YP_005840856.1| - 0.045 14.1 0.0 0.073 13.4 0.0 1.4 1 1 0 1 1 1 0 Penicillinase repressor AstA PF04958.12 gi|385804456|ref|YP_005840856.1| - 0.048 12.2 0.0 0.054 12.1 0.0 1.1 1 0 0 1 1 1 0 Arginine N-succinyltransferase beta subunit HTH_8 PF02954.19 gi|385804456|ref|YP_005840856.1| - 0.055 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_28 PF13518.6 gi|385804456|ref|YP_005840856.1| - 0.087 13.0 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain PheRS_DBD1 PF18552.1 gi|385804456|ref|YP_005840856.1| - 0.095 12.5 0.1 0.21 11.4 0.0 1.6 2 0 0 2 2 2 0 PheRS DNA binding domain 1 Epimerase PF01370.21 gi|385804457|ref|YP_005840857.1| - 8.2e-20 71.3 0.0 1.9e-19 70.1 0.0 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|385804457|ref|YP_005840857.1| - 7.6e-13 48.6 0.5 5.9e-12 45.6 0.5 2.1 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|385804457|ref|YP_005840857.1| - 8.1e-05 21.9 0.1 0.0023 17.1 0.0 2.3 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|385804457|ref|YP_005840857.1| - 0.014 14.5 0.4 0.15 11.2 0.1 2.8 3 1 0 3 3 3 0 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|385804457|ref|YP_005840857.1| - 0.025 13.6 0.1 0.054 12.5 0.1 1.7 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.21 gi|385804458|ref|YP_005840858.1| - 2.2e-48 164.9 0.1 2.6e-48 164.6 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|385804458|ref|YP_005840858.1| - 2.9e-37 128.8 0.0 4.5e-37 128.2 0.0 1.3 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|385804458|ref|YP_005840858.1| - 2.4e-29 102.2 0.0 3.9e-29 101.5 0.0 1.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|385804458|ref|YP_005840858.1| - 5.5e-16 58.5 0.0 7.1e-16 58.1 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|385804458|ref|YP_005840858.1| - 4.1e-14 52.4 0.0 2.2e-13 50.0 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|385804458|ref|YP_005840858.1| - 8.6e-13 48.6 0.0 1.3e-12 48.0 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|385804458|ref|YP_005840858.1| - 8.7e-12 44.8 0.0 9.4e-11 41.4 0.1 2.2 1 1 0 1 1 1 1 Male sterility protein NmrA PF05368.13 gi|385804458|ref|YP_005840858.1| - 0.00024 20.8 0.0 0.0006 19.5 0.0 1.7 1 1 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|385804458|ref|YP_005840858.1| - 0.00081 19.3 0.0 0.0013 18.6 0.0 1.5 1 0 0 1 1 1 1 KR domain Sacchrp_dh_NADP PF03435.18 gi|385804458|ref|YP_005840858.1| - 0.0018 18.5 0.1 0.005 17.1 0.0 1.7 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain adh_short PF00106.25 gi|385804458|ref|YP_005840858.1| - 0.0081 15.6 0.0 0.015 14.7 0.0 1.5 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 gi|385804459|ref|YP_005840859.1| - 7.8e-39 133.6 0.0 1e-38 133.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|385804459|ref|YP_005840859.1| - 1.4e-28 100.3 0.0 1.6e-28 100.1 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|385804459|ref|YP_005840859.1| - 1.1e-24 87.1 0.1 1.3e-24 86.8 0.1 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|385804459|ref|YP_005840859.1| - 2.7e-19 69.3 0.0 8.4e-19 67.6 0.0 1.7 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|385804459|ref|YP_005840859.1| - 8e-17 61.3 0.0 3.5e-16 59.2 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|385804459|ref|YP_005840859.1| - 8.4e-09 35.0 0.0 2.7e-06 26.8 0.0 2.8 2 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|385804459|ref|YP_005840859.1| - 1.7e-07 31.4 0.2 1.1e-06 28.6 0.1 2.3 2 1 0 2 2 2 1 NAD(P)H-binding Semialdhyde_dh PF01118.24 gi|385804459|ref|YP_005840859.1| - 0.00012 22.5 0.0 0.00029 21.3 0.0 1.7 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|385804459|ref|YP_005840859.1| - 0.00076 19.6 0.4 0.0017 18.5 0.1 1.7 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|385804459|ref|YP_005840859.1| - 0.0015 18.8 0.7 0.0037 17.5 0.1 2.0 2 1 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain Ldh_1_N PF00056.23 gi|385804459|ref|YP_005840859.1| - 0.0049 17.0 0.2 0.009 16.1 0.2 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain NmrA PF05368.13 gi|385804459|ref|YP_005840859.1| - 0.012 15.2 0.1 0.034 13.7 0.1 1.8 2 0 0 2 2 2 0 NmrA-like family DUF1131 PF06572.12 gi|385804459|ref|YP_005840859.1| - 0.04 13.7 0.0 0.074 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1131) TrkA_N PF02254.18 gi|385804459|ref|YP_005840859.1| - 0.08 13.2 1.7 0.12 12.7 0.2 1.9 2 0 0 2 2 2 0 TrkA-N domain TrmB PF01978.19 gi|385804460|ref|YP_005840860.1| - 2.6e-18 65.6 0.1 6.7e-18 64.4 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|385804460|ref|YP_005840860.1| - 0.001 18.8 0.0 0.0024 17.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain YaeQ PF07152.12 gi|385804460|ref|YP_005840860.1| - 0.019 14.6 0.0 0.086 12.4 0.0 2.0 2 1 1 3 3 3 0 YaeQ protein Rrf2 PF02082.20 gi|385804460|ref|YP_005840860.1| - 0.054 13.8 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.6 gi|385804460|ref|YP_005840860.1| - 0.11 12.0 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding RHH_3 PF12651.7 gi|385804460|ref|YP_005840860.1| - 0.2 11.6 0.7 13 5.8 0.0 2.8 3 0 0 3 3 3 0 Ribbon-helix-helix domain NTP_transferase PF00483.23 gi|385804462|ref|YP_005840862.1| - 2.9e-37 128.6 0.0 3.9e-37 128.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|385804462|ref|YP_005840862.1| - 5.8e-14 52.8 0.0 1.1e-13 51.8 0.0 1.6 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|385804462|ref|YP_005840862.1| - 4.3e-13 48.4 14.1 1.2e-07 31.2 0.8 4.9 2 2 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|385804462|ref|YP_005840862.1| - 2.3e-05 24.0 6.7 0.00057 19.6 1.6 4.4 5 1 0 5 5 5 2 Hexapeptide repeat of succinyl-transferase ADP_PFK_GK PF04587.15 gi|385804462|ref|YP_005840862.1| - 0.043 12.4 0.0 0.076 11.6 0.0 1.4 1 0 0 1 1 1 0 ADP-specific Phosphofructokinase/Glucokinase conserved region DUF4954 PF16314.5 gi|385804462|ref|YP_005840862.1| - 0.14 10.2 0.2 0.21 9.7 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) SIS PF01380.22 gi|385804463|ref|YP_005840863.1| - 4.5e-52 175.3 0.2 5e-28 97.6 0.1 2.2 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|385804463|ref|YP_005840863.1| - 5e-21 75.3 0.1 1.1e-20 74.2 0.1 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|385804463|ref|YP_005840863.1| - 7e-20 71.2 0.0 1.3e-19 70.3 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|385804463|ref|YP_005840863.1| - 0.00037 20.5 0.1 0.048 13.7 0.0 2.5 2 1 0 2 2 2 1 SIS domain GATase_4 PF13230.6 gi|385804463|ref|YP_005840863.1| - 0.042 12.7 0.0 0.077 11.9 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferases class-II DUF4154 PF13689.6 gi|385804463|ref|YP_005840863.1| - 0.064 13.5 0.0 0.28 11.4 0.0 2.0 2 0 0 2 2 2 0 YfiR/HmsC-like NTP_transferase PF00483.23 gi|385804465|ref|YP_005840865.1| - 2.2e-40 138.8 0.0 3.1e-40 138.3 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|385804465|ref|YP_005840865.1| - 3e-14 53.7 0.0 4.5e-14 53.1 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|385804465|ref|YP_005840865.1| - 9.8e-10 37.8 15.5 7.6e-06 25.4 1.6 4.5 2 1 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|385804465|ref|YP_005840865.1| - 0.014 15.1 0.0 0.02 14.6 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|385804465|ref|YP_005840865.1| - 0.036 13.9 0.0 0.058 13.2 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 NAD_binding_10 PF13460.6 gi|385804465|ref|YP_005840865.1| - 0.06 13.2 0.1 0.095 12.6 0.1 1.3 1 0 0 1 1 1 0 NAD(P)H-binding Hexapep_2 PF14602.6 gi|385804465|ref|YP_005840865.1| - 1.4 8.7 13.8 3.1 7.6 0.1 4.0 4 0 0 4 4 4 0 Hexapeptide repeat of succinyl-transferase TrmB PF01978.19 gi|385804466|ref|YP_005840866.1| - 5.8e-05 22.9 0.1 7.6e-05 22.5 0.1 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|385804466|ref|YP_005840866.1| - 0.0038 17.0 0.3 0.0047 16.7 0.3 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.17 gi|385804466|ref|YP_005840866.1| - 0.01 15.7 0.0 0.012 15.4 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_Mga PF08280.11 gi|385804466|ref|YP_005840866.1| - 0.034 14.2 0.7 0.051 13.6 0.7 1.2 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_27 PF13463.6 gi|385804466|ref|YP_005840866.1| - 0.051 14.1 0.0 0.063 13.8 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain PadR PF03551.14 gi|385804466|ref|YP_005840866.1| - 0.065 13.2 0.1 0.093 12.7 0.1 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family MarR PF01047.22 gi|385804466|ref|YP_005840866.1| - 0.073 13.0 0.2 0.091 12.7 0.2 1.2 1 0 0 1 1 1 0 MarR family DUF1706 PF08020.11 gi|385804466|ref|YP_005840866.1| - 0.075 12.9 0.0 0.075 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1706) HTH_20 PF12840.7 gi|385804466|ref|YP_005840866.1| - 0.094 12.8 0.1 0.11 12.5 0.1 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain FAD_binding_2 PF00890.24 gi|385804467|ref|YP_005840867.1| - 2.4e-124 415.6 6.8 2.4e-124 415.6 6.8 1.8 2 0 0 2 2 2 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|385804467|ref|YP_005840867.1| - 4.6e-38 130.1 0.4 7.3e-38 129.4 0.4 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|385804467|ref|YP_005840867.1| - 9.3e-10 38.2 0.7 0.00013 21.4 0.2 2.7 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|385804467|ref|YP_005840867.1| - 2.1e-05 24.3 7.2 0.00052 19.7 6.6 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|385804467|ref|YP_005840867.1| - 0.00015 20.6 2.1 0.0002 20.2 0.8 1.9 3 0 0 3 3 3 1 HI0933-like protein FAD_oxidored PF12831.7 gi|385804467|ref|YP_005840867.1| - 0.00073 19.0 4.0 0.00073 19.0 4.0 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|385804467|ref|YP_005840867.1| - 0.0023 17.1 3.6 0.0023 17.1 3.6 1.9 3 0 0 3 3 3 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|385804467|ref|YP_005840867.1| - 0.0028 16.9 1.5 0.018 14.3 0.5 2.3 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.19 gi|385804467|ref|YP_005840867.1| - 0.0044 16.3 1.0 0.009 15.3 1.0 1.5 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|385804467|ref|YP_005840867.1| - 0.0065 15.8 2.0 0.0075 15.5 0.5 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|385804467|ref|YP_005840867.1| - 0.013 14.8 1.4 0.03 13.6 0.5 2.0 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 gi|385804467|ref|YP_005840867.1| - 0.045 14.0 0.3 0.17 12.1 0.3 2.1 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|385804467|ref|YP_005840867.1| - 0.051 14.0 0.1 0.12 12.8 0.0 1.7 2 0 0 2 2 2 0 Putative NAD(P)-binding Pyr_redox PF00070.27 gi|385804467|ref|YP_005840867.1| - 0.061 13.9 1.0 0.38 11.4 0.6 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Fer2_3 PF13085.6 gi|385804468|ref|YP_005840868.1| - 8.6e-34 115.8 0.1 8.6e-34 115.8 0.1 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|385804468|ref|YP_005840868.1| - 2.9e-12 46.8 3.7 6.6e-12 45.7 3.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|385804468|ref|YP_005840868.1| - 7.7e-08 32.3 4.3 1.6e-07 31.3 4.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|385804468|ref|YP_005840868.1| - 6.8e-07 29.8 0.9 2.5e-06 28.0 0.8 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|385804468|ref|YP_005840868.1| - 2.8e-05 24.6 4.0 6.6e-05 23.4 4.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|385804468|ref|YP_005840868.1| - 0.00028 21.0 8.4 0.0013 18.9 8.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|385804468|ref|YP_005840868.1| - 0.0083 17.0 7.9 0.045 14.7 7.1 2.5 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_20 PF14691.6 gi|385804468|ref|YP_005840868.1| - 0.017 14.9 6.7 0.96 9.2 0.4 2.4 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.6 gi|385804468|ref|YP_005840868.1| - 0.028 14.5 2.5 0.17 12.0 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain YtkA PF13115.6 gi|385804468|ref|YP_005840868.1| - 0.04 14.5 0.1 0.17 12.5 0.0 2.1 2 0 0 2 2 2 0 YtkA-like Fer4_4 PF12800.7 gi|385804468|ref|YP_005840868.1| - 0.048 14.2 8.9 1.2 9.8 3.2 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|385804468|ref|YP_005840868.1| - 0.13 13.0 1.8 9.3 7.1 0.2 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|385804468|ref|YP_005840868.1| - 0.27 11.4 6.9 3.3 7.9 1.5 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|385804468|ref|YP_005840868.1| - 1.1 9.2 8.8 3 7.8 2.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|385804468|ref|YP_005840868.1| - 1.8 8.8 7.1 4.6 7.5 2.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|385804468|ref|YP_005840868.1| - 2.6 9.2 10.5 4.4 8.5 0.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|385804468|ref|YP_005840868.1| - 7.8 6.8 16.7 0.21 11.8 2.3 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain Sdh_cyt PF01127.22 gi|385804469|ref|YP_005840869.1| - 1.6e-09 37.8 7.0 2e-09 37.5 7.0 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Sdh_cyt PF01127.22 gi|385804470|ref|YP_005840870.1| - 1e-24 86.9 4.6 1.1e-24 86.7 4.6 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Tox-ODYAM1 PF15642.6 gi|385804470|ref|YP_005840870.1| - 0.22 10.5 0.1 0.34 9.8 0.1 1.3 1 1 0 1 1 1 0 Toxin in Odyssella and Amoebophilus Rep_fac-A_3 PF08661.11 gi|385804472|ref|YP_005840872.1| - 0.0028 18.0 0.1 0.004 17.5 0.1 1.2 1 0 0 1 1 1 1 Replication factor A protein 3 tRNA_anti-like PF12869.7 gi|385804472|ref|YP_005840872.1| - 0.0073 15.9 2.2 0.023 14.3 0.0 2.2 2 0 0 2 2 2 1 tRNA_anti-like DUF4131 PF13567.6 gi|385804472|ref|YP_005840872.1| - 0.042 13.5 0.8 0.37 10.4 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) TusA PF01206.17 gi|385804472|ref|YP_005840872.1| - 0.047 13.5 0.0 0.084 12.7 0.0 1.4 1 0 0 1 1 1 0 Sulfurtransferase TusA TOBE PF03459.17 gi|385804472|ref|YP_005840872.1| - 0.11 12.8 0.0 0.22 11.8 0.0 1.6 1 0 0 1 1 1 0 TOBE domain SpoVR PF04293.13 gi|385804474|ref|YP_005840874.1| - 1e-90 304.4 6.2 1.7e-74 251.0 0.1 2.2 2 0 0 2 2 2 2 SpoVR like protein YdaS_antitoxin PF15943.5 gi|385804474|ref|YP_005840874.1| - 0.19 11.6 0.1 1.1 9.2 0.0 2.2 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DUF444 PF04285.12 gi|385804475|ref|YP_005840875.1| - 6.3e-124 414.3 0.0 7.1e-124 414.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF444) PrkA PF06798.12 gi|385804476|ref|YP_005840876.1| - 3.2e-40 138.4 0.0 6.2e-40 137.4 0.0 1.5 1 0 0 1 1 1 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.11 gi|385804476|ref|YP_005840876.1| - 1.1e-13 50.8 0.0 9.3e-09 34.6 0.0 3.8 2 1 0 2 2 2 2 PrkA AAA domain PrkA PF06798.12 gi|385804477|ref|YP_005840877.1| - 2.6e-70 237.0 6.1 2.6e-70 237.0 6.1 2.0 2 0 0 2 2 2 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.11 gi|385804477|ref|YP_005840877.1| - 7.8e-66 222.4 0.0 1.3e-65 221.6 0.0 1.3 1 0 0 1 1 1 1 PrkA AAA domain RasGAP_C PF03836.15 gi|385804477|ref|YP_005840877.1| - 0.0035 17.5 0.6 0.45 10.7 0.1 2.6 2 1 0 2 2 2 1 RasGAP C-terminus Rsa3 PF14615.6 gi|385804477|ref|YP_005840877.1| - 0.11 12.0 0.8 0.59 9.8 0.2 2.6 2 0 0 2 2 2 0 Ribosome-assembly protein 3 ATP-synt_10 PF05176.14 gi|385804477|ref|YP_005840877.1| - 0.12 11.6 0.0 0.37 10.0 0.0 1.7 2 0 0 2 2 2 0 ATP10 protein AAA_16 PF13191.6 gi|385804477|ref|YP_005840877.1| - 0.13 12.6 0.1 1.8 8.9 0.0 2.7 3 1 0 3 3 3 0 AAA ATPase domain AAA_5 PF07728.14 gi|385804477|ref|YP_005840877.1| - 0.33 11.0 1.1 56 3.7 1.2 2.9 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) UPF0179 PF03684.13 gi|385804478|ref|YP_005840878.1| - 2.3e-45 153.9 0.2 2.6e-45 153.8 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.6 gi|385804478|ref|YP_005840878.1| - 0.017 15.4 2.1 0.025 14.8 0.2 2.0 1 1 0 2 2 2 0 Transposase DDE domain LRV_FeS PF05484.11 gi|385804478|ref|YP_005840878.1| - 0.66 10.0 0.2 0.66 10.0 0.2 2.8 3 0 0 3 3 3 0 LRV protein FeS4 cluster Opy2 PF09463.10 gi|385804478|ref|YP_005840878.1| - 9.7 6.6 10.2 2.8 8.4 1.7 2.5 3 0 0 3 3 3 0 Opy2 protein AstE_AspA PF04952.14 gi|385804479|ref|YP_005840879.1| - 1.1e-14 54.2 0.0 3.2e-14 52.7 0.0 1.7 2 0 0 2 2 2 1 Succinylglutamate desuccinylase / Aspartoacylase family DUF309 PF03745.14 gi|385804480|ref|YP_005840880.1| - 8.7e-15 54.2 0.1 1.3e-14 53.7 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) RPE65 PF03055.15 gi|385804481|ref|YP_005840881.1| - 1.5e-105 354.1 0.0 1.7e-105 353.9 0.0 1.0 1 0 0 1 1 1 1 Retinal pigment epithelial membrane protein GPHR_N PF12537.8 gi|385804482|ref|YP_005840882.1| - 0.0027 17.8 0.1 0.028 14.5 0.1 2.5 3 1 0 3 3 3 1 The Golgi pH Regulator (GPHR) Family N-terminal Amidohydro_1 PF01979.20 gi|385804483|ref|YP_005840883.1| - 3.8e-28 98.8 0.5 1.2e-25 90.6 0.5 2.3 1 1 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.22 gi|385804483|ref|YP_005840883.1| - 6.2e-08 32.3 0.0 9.1e-08 31.8 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.11 gi|385804483|ref|YP_005840883.1| - 2.7e-05 23.9 1.4 0.0043 16.6 0.3 2.4 2 1 0 2 2 2 2 Amidohydrolase family HD PF01966.22 gi|385804484|ref|YP_005840884.1| - 9.6e-12 45.2 0.6 2.1e-11 44.1 0.6 1.6 1 0 0 1 1 1 1 HD domain UPF0052 PF01933.18 gi|385804485|ref|YP_005840885.1| - 9.7e-47 159.6 0.0 1.3e-46 159.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 Dus PF01207.17 gi|385804486|ref|YP_005840886.1| - 2.3e-06 27.0 1.2 9e-06 25.0 1.2 1.8 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) HOASN PF14515.6 gi|385804486|ref|YP_005840886.1| - 0.097 13.1 0.0 0.22 11.9 0.0 1.7 1 0 0 1 1 1 0 Haem-oxygenase-associated N-terminal helices CitG PF01874.16 gi|385804487|ref|YP_005840887.1| - 4.3e-57 193.9 4.8 4.8e-57 193.7 4.8 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.12 gi|385804488|ref|YP_005840888.1| - 1.6e-37 129.0 0.0 5.4e-32 111.0 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF447) Ribosomal_S17e PF00833.18 gi|385804489|ref|YP_005840889.1| - 4.6e-12 45.9 0.1 5.3e-12 45.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S17 DUF4019 PF13211.6 gi|385804489|ref|YP_005840889.1| - 0.04 14.3 0.0 0.044 14.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4019) PemK_toxin PF02452.17 gi|385804490|ref|YP_005840890.1| - 0.00069 20.0 0.0 0.00083 19.7 0.0 1.1 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system VIT PF08487.10 gi|385804490|ref|YP_005840890.1| - 0.037 14.2 0.0 0.05 13.8 0.0 1.2 1 0 0 1 1 1 0 Vault protein inter-alpha-trypsin domain Carboxyl_trans PF01039.22 gi|385804491|ref|YP_005840891.1| - 8.8e-197 654.6 0.0 9.9e-197 654.4 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|385804491|ref|YP_005840891.1| - 0.026 14.0 0.1 0.13 11.7 0.0 1.9 2 0 0 2 2 2 0 Malonate decarboxylase gamma subunit (MdcE) Zn-ribbon_8 PF09723.10 gi|385804492|ref|YP_005840892.1| - 0.015 15.4 0.6 4.6 7.4 0.0 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zf-C4pol PF14260.6 gi|385804492|ref|YP_005840892.1| - 0.019 15.4 1.0 2 9.0 1.2 2.0 1 1 1 2 2 2 0 C4-type zinc-finger of DNA polymerase delta Mononeg_mRNAcap PF14318.6 gi|385804492|ref|YP_005840892.1| - 0.022 14.0 0.3 0.027 13.7 0.3 1.0 1 0 0 1 1 1 0 Mononegavirales mRNA-capping region V zf-Di19 PF05605.12 gi|385804492|ref|YP_005840892.1| - 0.026 14.8 0.9 0.046 14.0 0.9 1.4 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding AhpC-TSA PF00578.21 gi|385804493|ref|YP_005840893.1| - 1.3e-30 105.9 0.0 1.5e-30 105.7 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|385804493|ref|YP_005840893.1| - 1.4e-21 76.7 0.0 1.7e-21 76.5 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|385804493|ref|YP_005840893.1| - 0.0023 18.0 0.0 0.03 14.4 0.0 2.0 1 1 1 2 2 2 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.12 gi|385804493|ref|YP_005840893.1| - 0.049 13.2 0.0 0.065 12.8 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) AdoMet_dc PF02675.15 gi|385804493|ref|YP_005840893.1| - 0.071 13.4 0.0 0.11 12.8 0.0 1.2 1 0 0 1 1 1 0 S-adenosylmethionine decarboxylase ILVD_EDD PF00920.21 gi|385804494|ref|YP_005840894.1| - 4.6e-199 662.3 2.9 5.2e-199 662.1 2.9 1.0 1 0 0 1 1 1 1 Dehydratase family DGC PF08859.11 gi|385804494|ref|YP_005840894.1| - 0.039 14.1 0.5 1.3 9.2 0.0 2.3 2 0 0 2 2 2 0 DGC domain MoCF_biosynth PF00994.24 gi|385804495|ref|YP_005840895.1| - 8.5e-29 100.1 1.2 1.1e-28 99.6 1.2 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain HTH_5 PF01022.20 gi|385804496|ref|YP_005840896.1| - 1.4e-05 24.8 0.1 2.7e-05 23.9 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|385804496|ref|YP_005840896.1| - 0.00067 19.6 0.0 0.0012 18.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|385804496|ref|YP_005840896.1| - 0.0097 15.8 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|385804496|ref|YP_005840896.1| - 0.014 15.4 0.0 0.032 14.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|385804496|ref|YP_005840896.1| - 0.02 14.8 0.0 0.04 13.8 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|385804496|ref|YP_005840896.1| - 0.033 14.1 0.0 0.069 13.1 0.0 1.5 1 0 0 1 1 1 0 HTH domain GntR PF00392.21 gi|385804496|ref|YP_005840896.1| - 0.088 12.5 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|385804496|ref|YP_005840896.1| - 0.12 12.4 0.1 0.32 11.0 0.1 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|385804496|ref|YP_005840896.1| - 0.13 12.5 0.0 0.57 10.4 0.0 2.0 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain ADH_zinc_N PF00107.26 gi|385804497|ref|YP_005840897.1| - 3.1e-34 117.8 0.1 6.2e-34 116.8 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|385804497|ref|YP_005840897.1| - 2.4e-24 86.9 0.0 4.2e-24 86.1 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|385804497|ref|YP_005840897.1| - 1.1e-18 67.1 0.0 2.2e-18 66.1 0.0 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain adh_short PF00106.25 gi|385804497|ref|YP_005840897.1| - 0.00067 19.2 0.1 0.00092 18.7 0.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase DapB_N PF01113.20 gi|385804497|ref|YP_005840897.1| - 0.0021 18.2 0.1 0.004 17.3 0.1 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus AlaDh_PNT_C PF01262.21 gi|385804497|ref|YP_005840897.1| - 0.0083 15.4 0.3 0.017 14.5 0.3 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.6 gi|385804497|ref|YP_005840897.1| - 0.032 14.1 0.2 0.05 13.5 0.2 1.5 1 0 0 1 1 1 0 NAD(P)H-binding Semialdhyde_dh PF01118.24 gi|385804497|ref|YP_005840897.1| - 0.12 12.8 0.2 0.24 11.9 0.2 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain acVLRF1 PF18859.1 gi|385804500|ref|YP_005840900.1| - 3.2e-32 111.5 2.4 3.2e-32 111.5 2.4 2.5 2 1 1 3 3 3 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|385804500|ref|YP_005840900.1| - 1.8e-09 38.0 1.0 1.8e-09 38.0 1.0 2.3 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_2 PF03464.15 gi|385804500|ref|YP_005840900.1| - 7.2e-06 26.4 0.0 1.6e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 2 Tropomyosin_1 PF12718.7 gi|385804500|ref|YP_005840900.1| - 0.004 17.3 13.6 0.0072 16.5 8.7 2.2 2 0 0 2 2 2 1 Tropomyosin like Laminin_II PF06009.12 gi|385804500|ref|YP_005840900.1| - 0.0071 16.4 3.8 0.0071 16.4 3.8 1.8 2 0 0 2 2 1 1 Laminin Domain II Leu_zip PF15294.6 gi|385804500|ref|YP_005840900.1| - 0.0086 15.6 6.6 0.0086 15.6 6.6 1.7 2 0 0 2 2 2 1 Leucine zipper Fmp27_WPPW PF10359.9 gi|385804500|ref|YP_005840900.1| - 0.061 12.2 7.8 0.13 11.1 4.6 2.0 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain Pox_A_type_inc PF04508.12 gi|385804500|ref|YP_005840900.1| - 0.062 13.2 3.5 0.57 10.1 0.6 3.4 3 0 0 3 3 3 0 Viral A-type inclusion protein repeat GAS PF13851.6 gi|385804500|ref|YP_005840900.1| - 0.071 12.5 14.1 0.033 13.5 10.0 2.0 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding FPP PF05911.11 gi|385804500|ref|YP_005840900.1| - 0.088 11.0 9.7 0.023 12.9 6.7 1.4 2 0 0 2 2 2 0 Filament-like plant protein, long coiled-coil TSC22 PF01166.18 gi|385804500|ref|YP_005840900.1| - 0.25 11.7 7.5 7.1 7.0 0.3 2.8 2 0 0 2 2 2 0 TSC-22/dip/bun family Spore_YhcN_YlaJ PF09580.10 gi|385804500|ref|YP_005840900.1| - 0.25 11.4 7.0 2.9 8.0 0.0 2.4 2 1 0 2 2 2 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) TMPIT PF07851.13 gi|385804500|ref|YP_005840900.1| - 0.26 10.5 1.6 0.43 9.8 1.6 1.3 1 0 0 1 1 1 0 TMPIT-like protein DivIC PF04977.15 gi|385804500|ref|YP_005840900.1| - 0.29 10.9 11.3 0.42 10.4 3.3 2.5 1 1 1 2 2 2 0 Septum formation initiator Sas6_CC PF18594.1 gi|385804500|ref|YP_005840900.1| - 0.31 10.8 4.3 0.27 11.0 0.4 2.6 2 1 1 3 3 3 0 Sas6/XLF/XRCC4 coiled-coil domain ABC_tran_CTD PF16326.5 gi|385804500|ref|YP_005840900.1| - 0.33 11.2 18.3 0.36 11.1 11.4 3.5 3 1 1 4 4 4 0 ABC transporter C-terminal domain DUF3450 PF11932.8 gi|385804500|ref|YP_005840900.1| - 0.51 9.6 10.1 0.15 11.3 5.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DUF4988 PF16378.5 gi|385804500|ref|YP_005840900.1| - 0.56 9.9 3.1 0.77 9.4 0.2 2.5 3 0 0 3 3 2 0 Domain of unknown function Atg14 PF10186.9 gi|385804500|ref|YP_005840900.1| - 0.71 8.9 11.7 0.52 9.3 9.5 1.7 2 0 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF5082 PF16888.5 gi|385804500|ref|YP_005840900.1| - 0.77 10.0 14.2 0.047 14.0 2.5 3.2 4 0 0 4 4 3 0 Domain of unknown function (DUF5082) HAUS5 PF14817.6 gi|385804500|ref|YP_005840900.1| - 0.98 8.1 17.1 0.41 9.3 13.1 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 5 HemX PF04375.14 gi|385804500|ref|YP_005840900.1| - 1.2 8.3 10.9 0.66 9.2 6.6 2.0 2 0 0 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase Mei5 PF10376.9 gi|385804500|ref|YP_005840900.1| - 1.3 8.8 9.4 1.9 8.3 8.8 1.5 1 1 0 1 1 1 0 Double-strand recombination repair protein DUF1192 PF06698.11 gi|385804500|ref|YP_005840900.1| - 1.4 9.1 16.6 0.86 9.7 5.0 2.8 3 0 0 3 3 2 0 Protein of unknown function (DUF1192) Baculo_PEP_C PF04513.12 gi|385804500|ref|YP_005840900.1| - 1.4 8.9 4.2 3.3 7.7 1.3 2.6 3 0 0 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Jnk-SapK_ap_N PF09744.9 gi|385804500|ref|YP_005840900.1| - 1.7 8.9 19.1 0.5 10.6 13.5 2.3 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 CENP-F_leu_zip PF10473.9 gi|385804500|ref|YP_005840900.1| - 2.2 8.3 18.3 1.9 8.5 6.2 3.0 2 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FapA PF03961.13 gi|385804500|ref|YP_005840900.1| - 2.8 6.5 7.7 0.35 9.4 3.7 1.5 2 0 0 2 2 2 0 Flagellar Assembly Protein A TMF_DNA_bd PF12329.8 gi|385804500|ref|YP_005840900.1| - 2.9 8.0 12.8 7.1 6.7 12.8 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Ax_dynein_light PF10211.9 gi|385804500|ref|YP_005840900.1| - 3 7.7 16.4 5.6 6.9 10.6 2.9 2 1 1 3 3 3 0 Axonemal dynein light chain DHR10 PF18595.1 gi|385804500|ref|YP_005840900.1| - 3 7.9 24.9 2.8 8.0 19.4 2.6 2 1 0 2 2 2 0 Designed helical repeat protein 10 domain CLZ PF16526.5 gi|385804500|ref|YP_005840900.1| - 3.2 8.2 12.7 1.1 9.7 7.9 2.7 2 1 1 3 3 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF724 PF05266.14 gi|385804500|ref|YP_005840900.1| - 3.3 7.5 9.9 0.83 9.5 5.9 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF724) DUF1690 PF07956.11 gi|385804500|ref|YP_005840900.1| - 3.5 8.0 11.9 3 8.2 8.5 2.2 2 0 0 2 2 2 0 Protein of Unknown function (DUF1690) FlaC_arch PF05377.11 gi|385804500|ref|YP_005840900.1| - 4.1 7.9 6.3 3.6 8.1 0.5 3.0 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) V_ATPase_I PF01496.19 gi|385804500|ref|YP_005840900.1| - 6.9 4.5 5.6 1.7 6.4 2.0 1.6 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family Cep57_MT_bd PF06657.13 gi|385804500|ref|YP_005840900.1| - 8 7.0 14.0 7.5 7.1 8.9 3.1 3 1 0 3 3 3 0 Centrosome microtubule-binding domain of Cep57 MPS2 PF17060.5 gi|385804500|ref|YP_005840900.1| - 8.1 5.6 7.8 4.6 6.4 4.4 2.2 2 1 0 2 2 2 0 Monopolar spindle protein 2 PspA_IM30 PF04012.12 gi|385804502|ref|YP_005840902.1| - 4.1e-33 114.8 31.9 4.1e-33 114.8 31.9 1.4 2 0 0 2 2 2 1 PspA/IM30 family DUF1664 PF07889.12 gi|385804502|ref|YP_005840902.1| - 0.006 16.6 5.3 0.006 16.6 5.3 3.0 2 1 2 4 4 3 1 Protein of unknown function (DUF1664) YabA PF06156.13 gi|385804502|ref|YP_005840902.1| - 0.013 16.2 24.4 0.11 13.2 7.5 3.5 1 1 2 3 3 3 0 Initiation control protein YabA DUF5082 PF16888.5 gi|385804502|ref|YP_005840902.1| - 0.013 15.7 9.4 0.013 15.7 9.4 3.1 1 1 0 3 3 3 0 Domain of unknown function (DUF5082) Spc7 PF08317.11 gi|385804502|ref|YP_005840902.1| - 0.028 13.3 38.0 0.0064 15.4 27.3 2.5 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF3535 PF12054.8 gi|385804502|ref|YP_005840902.1| - 0.029 13.6 7.6 0.048 12.9 7.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3535) ExsD PF16806.5 gi|385804502|ref|YP_005840902.1| - 0.041 13.8 7.7 0.062 13.2 7.7 1.3 1 0 0 1 1 1 0 Antiactivator protein ExsD Snf7 PF03357.21 gi|385804502|ref|YP_005840902.1| - 0.082 12.5 41.1 0.025 14.2 20.1 3.2 1 1 2 3 3 3 0 Snf7 DUF3450 PF11932.8 gi|385804502|ref|YP_005840902.1| - 0.11 11.8 29.6 2.1 7.6 11.9 3.1 1 1 3 4 4 4 0 Protein of unknown function (DUF3450) ERM PF00769.19 gi|385804502|ref|YP_005840902.1| - 0.22 11.3 45.2 0.4 10.5 45.2 1.5 1 1 0 1 1 1 0 Ezrin/radixin/moesin family DHR10 PF18595.1 gi|385804502|ref|YP_005840902.1| - 0.22 11.6 38.5 0.73 9.9 15.9 2.8 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain WXG100 PF06013.12 gi|385804502|ref|YP_005840902.1| - 0.26 11.6 19.5 0.41 10.9 5.9 2.9 2 1 1 3 3 3 0 Proteins of 100 residues with WXG AAA_13 PF13166.6 gi|385804502|ref|YP_005840902.1| - 0.27 9.8 27.0 0.094 11.3 24.0 1.6 1 1 0 1 1 1 0 AAA domain Prominin PF05478.11 gi|385804502|ref|YP_005840902.1| - 0.28 9.1 12.3 0.43 8.5 12.3 1.3 1 0 0 1 1 1 0 Prominin BLOC1_2 PF10046.9 gi|385804502|ref|YP_005840902.1| - 0.32 11.3 23.4 5.2 7.5 2.1 3.6 1 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF3584 PF12128.8 gi|385804502|ref|YP_005840902.1| - 0.67 7.4 34.4 0.29 8.6 32.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) Baculo_PEP_C PF04513.12 gi|385804502|ref|YP_005840902.1| - 0.67 10.0 9.1 15 5.6 0.1 3.3 1 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus ATG_C PF09333.11 gi|385804502|ref|YP_005840902.1| - 1.6 9.1 6.0 1.8 9.0 0.4 3.0 1 1 2 3 3 3 0 Autophagy-related protein C terminal domain SlyX PF04102.12 gi|385804502|ref|YP_005840902.1| - 1.9 9.2 26.9 0.4 11.3 5.7 3.6 2 1 1 3 3 3 0 SlyX Seryl_tRNA_N PF02403.22 gi|385804502|ref|YP_005840902.1| - 2 8.7 29.2 0.47 10.7 16.7 3.7 1 1 2 3 3 3 0 Seryl-tRNA synthetase N-terminal domain FapA PF03961.13 gi|385804502|ref|YP_005840902.1| - 2.6 6.6 22.8 0.29 9.7 11.5 2.4 1 1 2 3 3 3 0 Flagellar Assembly Protein A KELK PF15796.5 gi|385804502|ref|YP_005840902.1| - 2.9 8.4 30.7 1.3 9.5 8.1 4.2 1 1 3 4 4 4 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase YlqD PF11068.8 gi|385804502|ref|YP_005840902.1| - 3 8.2 29.9 1.4 9.3 17.6 3.1 2 1 1 3 3 3 0 YlqD protein Pox_G5 PF04599.12 gi|385804502|ref|YP_005840902.1| - 4.1 6.3 9.9 6.1 5.7 9.2 1.6 1 1 0 1 1 1 0 Poxvirus G5 protein FOXP-CC PF16159.5 gi|385804502|ref|YP_005840902.1| - 4.4 8.0 10.0 3.2 8.5 0.4 2.6 2 0 0 2 2 2 0 FOXP coiled-coil domain STAT_alpha PF01017.20 gi|385804502|ref|YP_005840902.1| - 4.6 7.1 23.2 0.44 10.4 5.2 2.6 1 1 1 2 2 2 0 STAT protein, all-alpha domain DUF4200 PF13863.6 gi|385804502|ref|YP_005840902.1| - 4.8 7.6 37.0 2.5 8.5 22.1 3.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) Exonuc_VII_L PF02601.15 gi|385804502|ref|YP_005840902.1| - 5 6.6 23.2 16 5.0 23.2 1.9 1 1 0 1 1 1 0 Exonuclease VII, large subunit CENP-F_leu_zip PF10473.9 gi|385804502|ref|YP_005840902.1| - 6.4 6.8 40.8 8.9 6.3 26.9 3.9 1 1 3 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TPR_MLP1_2 PF07926.12 gi|385804502|ref|YP_005840902.1| - 7.6 6.6 44.6 14 5.8 8.4 4.2 1 1 3 4 4 4 0 TPR/MLP1/MLP2-like protein DASH_Dam1 PF08653.10 gi|385804502|ref|YP_005840902.1| - 7.8 6.4 6.9 15 5.5 0.5 3.6 3 2 0 3 3 3 0 DASH complex subunit Dam1 TMPIT PF07851.13 gi|385804502|ref|YP_005840902.1| - 8.4 5.5 22.9 0.65 9.2 6.4 2.2 1 1 1 2 2 2 0 TMPIT-like protein GAS PF13851.6 gi|385804502|ref|YP_005840902.1| - 9.6 5.5 31.5 28 4.0 18.5 2.5 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding DLH PF01738.18 gi|385804503|ref|YP_005840903.1| - 2.1e-06 27.5 0.0 2.8e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 gi|385804503|ref|YP_005840903.1| - 0.001 18.8 0.0 0.037 13.7 0.0 2.0 1 1 1 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|385804503|ref|YP_005840903.1| - 0.0036 16.6 0.1 0.3 10.3 0.0 2.1 1 1 1 2 2 2 1 Serine aminopeptidase, S33 BAAT_C PF08840.11 gi|385804503|ref|YP_005840903.1| - 0.0065 16.4 0.0 0.014 15.3 0.0 1.4 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Thioesterase PF00975.20 gi|385804503|ref|YP_005840903.1| - 0.0083 16.3 0.2 0.12 12.5 0.2 2.0 2 0 0 2 2 2 1 Thioesterase domain Abhydrolase_6 PF12697.7 gi|385804503|ref|YP_005840903.1| - 0.017 15.8 0.0 0.021 15.4 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase family FSH1 PF03959.13 gi|385804503|ref|YP_005840903.1| - 0.032 13.9 0.2 0.22 11.2 0.2 2.0 1 1 0 1 1 1 0 Serine hydrolase (FSH1) CHS5_N PF16892.5 gi|385804503|ref|YP_005840903.1| - 0.086 12.8 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Chitin biosynthesis protein CHS5 N-terminus Abhydrolase_2 PF02230.16 gi|385804503|ref|YP_005840903.1| - 0.098 12.4 0.1 0.17 11.6 0.1 1.3 1 0 0 1 1 1 0 Phospholipase/Carboxylesterase Peptidase_S15 PF02129.18 gi|385804503|ref|YP_005840903.1| - 0.1 12.1 0.2 0.18 11.4 0.2 1.3 1 1 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) DUF3209 PF11483.8 gi|385804504|ref|YP_005840904.1| - 1.3e-55 187.2 2.4 1.4e-55 187.0 2.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3209) HWE_HK PF07536.14 gi|385804504|ref|YP_005840904.1| - 0.018 15.8 0.7 0.53 11.0 0.1 2.5 1 1 1 2 2 2 0 HWE histidine kinase MnmE_helical PF12631.7 gi|385804504|ref|YP_005840904.1| - 0.068 13.3 0.3 0.091 12.9 0.3 1.1 1 0 0 1 1 1 0 MnmE helical domain CbiX PF01903.17 gi|385804505|ref|YP_005840905.1| - 2.5e-41 140.3 0.0 1e-20 74.0 0.1 2.4 2 0 0 2 2 2 2 CbiX 2Fe-2S_thioredx PF01257.19 gi|385804505|ref|YP_005840905.1| - 1.7e-08 34.5 0.2 2.9e-08 33.7 0.2 1.3 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin CbiK PF06180.11 gi|385804505|ref|YP_005840905.1| - 6.8e-05 22.3 0.0 0.29 10.4 0.0 2.1 1 1 1 2 2 2 2 Cobalt chelatase (CbiK) Guanylin PF02058.15 gi|385804505|ref|YP_005840905.1| - 0.079 13.4 0.3 0.18 12.3 0.3 1.6 1 0 0 1 1 1 0 Guanylin precursor Suc_Fer-like PF06999.12 gi|385804505|ref|YP_005840905.1| - 0.099 12.5 0.0 0.38 10.6 0.0 1.9 2 0 0 2 2 2 0 Sucrase/ferredoxin-like DUF1636 PF07845.11 gi|385804505|ref|YP_005840905.1| - 0.13 12.7 0.5 0.82 10.1 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1636) PhoD PF09423.10 gi|385804506|ref|YP_005840906.1| - 0.025 13.6 0.8 0.033 13.2 0.8 1.1 1 0 0 1 1 1 0 PhoD-like phosphatase TP_methylase PF00590.20 gi|385804507|ref|YP_005840907.1| - 1.7e-38 132.7 0.4 2.3e-38 132.3 0.4 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.20 gi|385804508|ref|YP_005840908.1| - 6.6e-43 147.1 0.3 8.9e-43 146.7 0.3 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.8 gi|385804509|ref|YP_005840909.1| - 7.4e-18 64.3 0.2 2.1e-16 59.7 0.0 2.9 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal GMP_synt_C PF00958.22 gi|385804509|ref|YP_005840909.1| - 0.029 14.4 2.1 0.45 10.6 0.0 3.2 3 1 0 3 3 3 0 GMP synthase C terminal domain Prim-Pol PF09250.11 gi|385804509|ref|YP_005840909.1| - 3 8.2 5.9 28 5.1 0.0 2.2 1 1 1 2 2 2 0 Bifunctional DNA primase/polymerase, N-terminal Asparaginase_2 PF01112.18 gi|385804510|ref|YP_005840910.1| - 9.4e-47 159.5 12.4 1.1e-46 159.4 12.4 1.0 1 0 0 1 1 1 1 Asparaginase Usp PF00582.26 gi|385804513|ref|YP_005840913.1| - 1.4e-13 51.6 0.1 7.5e-13 49.2 0.1 1.8 1 1 0 1 1 1 1 Universal stress protein family LpxI_N PF17930.1 gi|385804513|ref|YP_005840913.1| - 0.13 12.1 0.0 0.29 11.0 0.0 1.6 1 1 1 2 2 2 0 LpxI N-terminal domain AI-2E_transport PF01594.16 gi|385804514|ref|YP_005840914.1| - 1.9e-22 79.8 29.1 2.7e-22 79.4 29.1 1.1 1 0 0 1 1 1 1 AI-2E family transporter DUF4914 PF16260.5 gi|385804514|ref|YP_005840914.1| - 0.097 10.7 0.0 0.14 10.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4914) MobB PF03205.14 gi|385804516|ref|YP_005840916.1| - 1.4e-25 89.7 0.0 1.7e-25 89.4 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.6 gi|385804516|ref|YP_005840916.1| - 0.0019 18.5 0.0 0.0032 17.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|385804516|ref|YP_005840916.1| - 0.012 16.2 0.0 0.014 15.9 0.0 1.2 1 0 0 1 1 1 0 ABC transporter GTP_EFTU PF00009.27 gi|385804516|ref|YP_005840916.1| - 0.013 15.1 0.1 0.023 14.3 0.1 1.4 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain DUF463 PF04317.12 gi|385804516|ref|YP_005840916.1| - 0.02 13.8 0.0 0.027 13.4 0.0 1.2 1 0 0 1 1 1 0 YcjX-like family, DUF463 AAA_14 PF13173.6 gi|385804516|ref|YP_005840916.1| - 0.021 14.9 0.0 0.059 13.4 0.0 1.7 1 1 1 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|385804516|ref|YP_005840916.1| - 0.021 14.6 0.1 0.035 13.9 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Pox_A32 PF04665.12 gi|385804516|ref|YP_005840916.1| - 0.025 14.0 0.0 0.082 12.3 0.0 1.7 2 0 0 2 2 2 0 Poxvirus A32 protein RsgA_GTPase PF03193.16 gi|385804516|ref|YP_005840916.1| - 0.026 14.4 0.2 0.7 9.8 0.0 2.1 1 1 1 2 2 2 0 RsgA GTPase AAA_33 PF13671.6 gi|385804516|ref|YP_005840916.1| - 0.039 14.1 0.0 0.11 12.6 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|385804516|ref|YP_005840916.1| - 0.041 14.2 0.0 0.083 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|385804516|ref|YP_005840916.1| - 0.042 13.8 0.0 0.055 13.4 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|385804516|ref|YP_005840916.1| - 0.048 14.0 0.0 0.064 13.6 0.0 1.4 1 1 0 1 1 1 0 RNA helicase MMR_HSR1 PF01926.23 gi|385804516|ref|YP_005840916.1| - 0.062 13.4 0.0 0.096 12.8 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|385804516|ref|YP_005840916.1| - 0.065 13.3 0.0 0.087 12.9 0.0 1.5 1 1 0 1 1 1 0 Dynamin family FtsK_SpoIIIE PF01580.18 gi|385804516|ref|YP_005840916.1| - 0.066 12.5 0.0 0.15 11.4 0.0 1.5 2 0 0 2 2 2 0 FtsK/SpoIIIE family SRPRB PF09439.10 gi|385804516|ref|YP_005840916.1| - 0.072 12.5 0.0 0.12 11.8 0.0 1.4 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_21 PF13304.6 gi|385804516|ref|YP_005840916.1| - 0.08 12.7 0.0 0.11 12.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|385804516|ref|YP_005840916.1| - 0.097 12.4 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SRP1_TIP1 PF00660.17 gi|385804516|ref|YP_005840916.1| - 0.12 12.4 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Seripauperin and TIP1 family AAA_23 PF13476.6 gi|385804516|ref|YP_005840916.1| - 0.13 12.7 0.0 0.16 12.5 0.0 1.3 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|385804516|ref|YP_005840916.1| - 0.14 11.9 0.0 0.16 11.7 0.0 1.4 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|385804516|ref|YP_005840916.1| - 0.14 11.2 0.0 0.21 10.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein PPV_E1_C PF00519.17 gi|385804516|ref|YP_005840916.1| - 0.15 10.9 0.0 0.21 10.4 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus helicase Septin PF00735.18 gi|385804516|ref|YP_005840916.1| - 0.15 11.3 0.0 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 Septin NACHT PF05729.12 gi|385804516|ref|YP_005840916.1| - 0.18 11.7 0.0 0.3 11.0 0.0 1.3 1 0 0 1 1 1 0 NACHT domain HTH_Crp_2 PF13545.6 gi|385804517|ref|YP_005840917.1| - 0.0018 18.2 0.1 0.0037 17.2 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|385804517|ref|YP_005840917.1| - 0.02 14.8 0.0 0.068 13.1 0.0 2.0 1 1 0 1 1 1 0 MarR family DUF1724 PF08350.10 gi|385804517|ref|YP_005840917.1| - 0.022 14.9 0.0 0.049 13.8 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1724) HTH_IclR PF09339.10 gi|385804517|ref|YP_005840917.1| - 0.032 14.0 0.1 0.15 11.9 0.0 2.1 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_23 PF13384.6 gi|385804517|ref|YP_005840917.1| - 0.059 13.2 0.1 0.13 12.1 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_5 PF01022.20 gi|385804517|ref|YP_005840917.1| - 0.15 11.9 0.0 0.37 10.7 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family EamA PF00892.20 gi|385804518|ref|YP_005840918.1| - 7.3e-40 136.3 40.5 2.5e-21 76.3 10.0 2.1 2 0 0 2 2 2 2 EamA-like transporter family DUF3084 PF11283.8 gi|385804518|ref|YP_005840918.1| - 0.033 14.1 0.2 0.033 14.1 0.2 4.3 2 1 2 4 4 4 0 Protein of unknown function (DUF3084) RseC_MucC PF04246.12 gi|385804519|ref|YP_005840919.1| - 8.5 6.3 8.8 0.68 9.9 0.5 2.8 2 1 1 3 3 3 0 Positive regulator of sigma(E), RseC/MucC RNA_binding PF01877.17 gi|385804520|ref|YP_005840920.1| - 1.2e-08 35.3 2.4 1.4e-07 31.8 2.1 2.2 1 1 0 1 1 1 1 RNA binding AAA_17 PF13207.6 gi|385804521|ref|YP_005840921.1| - 1e-16 61.6 0.1 1.5e-16 61.0 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|385804521|ref|YP_005840921.1| - 5.7e-10 39.8 0.0 7.8e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|385804521|ref|YP_005840921.1| - 5.1e-05 23.5 0.0 8.1e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 gi|385804521|ref|YP_005840921.1| - 0.0021 18.2 0.4 0.12 12.5 0.4 2.2 1 1 0 1 1 1 1 Cytidylate kinase-like family CoaE PF01121.20 gi|385804521|ref|YP_005840921.1| - 0.0031 17.2 0.1 2 8.0 0.0 2.2 2 0 0 2 2 2 2 Dephospho-CoA kinase PEP-utilizers PF00391.23 gi|385804521|ref|YP_005840921.1| - 0.0085 15.8 0.2 0.02 14.6 0.2 1.7 1 1 0 1 1 1 1 PEP-utilising enzyme, mobile domain SKI PF01202.22 gi|385804521|ref|YP_005840921.1| - 0.035 14.2 0.0 0.18 11.9 0.0 1.9 1 1 0 1 1 1 0 Shikimate kinase ADK PF00406.22 gi|385804521|ref|YP_005840921.1| - 0.041 14.0 0.1 0.073 13.2 0.1 1.6 1 1 0 1 1 1 0 Adenylate kinase Cpn60_TCP1 PF00118.24 gi|385804522|ref|YP_005840922.1| - 1.6e-178 594.3 12.7 1.9e-178 594.1 12.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Phage_holin_6_1 PF09682.10 gi|385804522|ref|YP_005840922.1| - 0.15 12.5 0.9 0.52 10.8 0.9 1.9 1 0 0 1 1 1 0 Bacteriophage holin of superfamily 6 (Holin_LLH) DICT PF10069.9 gi|385804523|ref|YP_005840923.1| - 4.1e-07 29.8 0.0 7.1e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 Sensory domain in DIguanylate Cyclases and Two-component system PRAI PF00697.22 gi|385804523|ref|YP_005840923.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DUF3189 PF11385.8 gi|385804523|ref|YP_005840923.1| - 0.19 11.6 0.0 0.34 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3189) KH_1 PF00013.29 gi|385804524|ref|YP_005840924.1| - 2.8e-12 46.3 3.6 6e-07 29.2 0.2 2.2 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|385804524|ref|YP_005840924.1| - 8.6e-05 22.3 2.5 0.0051 16.6 0.1 2.4 2 1 0 2 2 2 2 KH domain KH_4 PF13083.6 gi|385804524|ref|YP_005840924.1| - 0.0029 17.5 1.0 1.1 9.2 0.4 2.8 2 1 0 2 2 2 2 KH domain CRCB PF02537.15 gi|385804525|ref|YP_005840925.1| - 1.7e-16 60.3 6.6 2e-16 60.1 6.6 1.0 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) CRCB PF02537.15 gi|385804526|ref|YP_005840926.1| - 4.2e-15 55.8 14.6 5.2e-15 55.5 14.6 1.1 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) DUF87 PF01935.17 gi|385804527|ref|YP_005840927.1| - 2.4e-06 27.8 0.0 5.2e-06 26.7 0.0 1.6 2 0 0 2 2 2 1 Helicase HerA, central domain DUF853 PF05872.12 gi|385804527|ref|YP_005840927.1| - 2.2e-05 23.3 0.1 0.00024 19.9 0.0 2.1 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|385804527|ref|YP_005840927.1| - 2.3e-05 23.5 0.1 0.14 11.1 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|385804527|ref|YP_005840927.1| - 0.0082 15.5 0.1 0.28 10.5 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family Helicase_RecD PF05127.14 gi|385804527|ref|YP_005840927.1| - 0.055 13.3 0.0 0.28 11.0 0.0 2.1 2 0 0 2 2 2 0 Helicase AAA_16 PF13191.6 gi|385804527|ref|YP_005840927.1| - 0.075 13.4 0.4 0.36 11.2 0.4 2.2 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.7 gi|385804527|ref|YP_005840927.1| - 0.093 11.6 0.0 1 8.2 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain CarboxypepD_reg PF13620.6 gi|385804528|ref|YP_005840928.1| - 0.00017 21.8 0.4 0.00034 20.8 0.4 1.5 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain MG4 PF17789.1 gi|385804528|ref|YP_005840928.1| - 0.0017 18.5 0.0 0.0029 17.7 0.0 1.4 1 0 0 1 1 1 1 Macroglobulin domain MG4 YtkA PF13115.6 gi|385804528|ref|YP_005840928.1| - 0.0077 16.8 0.1 0.013 16.1 0.1 1.4 1 0 0 1 1 1 1 YtkA-like Big_1 PF02369.16 gi|385804528|ref|YP_005840928.1| - 0.015 15.2 0.4 0.029 14.3 0.4 1.4 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) CopC PF04234.12 gi|385804528|ref|YP_005840928.1| - 0.096 13.7 0.0 2.6 9.1 0.0 2.1 2 0 0 2 2 2 0 CopC domain DUF1743 PF08489.11 gi|385804529|ref|YP_005840929.1| - 2.2e-37 127.7 0.0 4.7e-37 126.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 gi|385804529|ref|YP_005840929.1| - 0.0048 16.8 0.1 0.096 12.7 0.0 2.4 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain C1_1 PF00130.22 gi|385804529|ref|YP_005840929.1| - 0.042 13.7 0.4 0.081 12.8 0.4 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.10 gi|385804529|ref|YP_005840929.1| - 0.065 13.4 1.0 11 6.2 0.1 2.7 2 0 0 2 2 2 0 Zinc ribbon domain IBR PF01485.21 gi|385804529|ref|YP_005840929.1| - 0.092 13.0 2.6 0.099 12.9 0.9 1.9 2 0 0 2 2 2 0 IBR domain, a half RING-finger domain OrfB_Zn_ribbon PF07282.11 gi|385804529|ref|YP_005840929.1| - 0.36 10.8 1.7 0.84 9.6 1.7 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-TFIIB PF13453.6 gi|385804529|ref|YP_005840929.1| - 0.37 10.2 2.1 0.78 9.1 2.1 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger Rubredoxin_2 PF18073.1 gi|385804529|ref|YP_005840929.1| - 4.6 7.1 5.7 1.4 8.7 0.4 2.7 2 0 0 2 2 2 0 Rubredoxin metal binding domain HTH_3 PF01381.22 gi|385804530|ref|YP_005840930.1| - 1.8e-10 40.7 0.0 3.4e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|385804530|ref|YP_005840930.1| - 3e-06 27.5 0.2 7.5e-06 26.2 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|385804530|ref|YP_005840930.1| - 6.3e-05 22.9 0.0 0.00011 22.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|385804530|ref|YP_005840930.1| - 0.00017 21.3 0.2 0.00055 19.6 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_25 PF13413.6 gi|385804530|ref|YP_005840930.1| - 0.00037 20.3 0.1 0.00066 19.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|385804530|ref|YP_005840930.1| - 0.00065 19.6 0.0 0.0015 18.4 0.0 1.6 1 0 0 1 1 1 1 HTH domain YdaS_antitoxin PF15943.5 gi|385804530|ref|YP_005840930.1| - 0.048 13.5 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_8 PF02954.19 gi|385804530|ref|YP_005840930.1| - 0.051 13.4 0.1 0.14 12.0 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family Sigma70_r4 PF04545.16 gi|385804530|ref|YP_005840930.1| - 0.062 12.8 0.1 0.13 11.8 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Phage_CI_repr PF07022.13 gi|385804530|ref|YP_005840930.1| - 0.13 12.4 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_38 PF13936.6 gi|385804530|ref|YP_005840930.1| - 0.14 11.9 0.0 0.27 11.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain GST_N_3 PF13417.6 gi|385804531|ref|YP_005840931.1| - 2.6e-12 47.0 0.0 2.8e-12 46.8 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|385804531|ref|YP_005840931.1| - 9.1e-12 45.0 0.0 1.1e-11 44.7 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|385804531|ref|YP_005840931.1| - 6.1e-08 32.9 0.0 7e-08 32.7 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|385804531|ref|YP_005840931.1| - 0.0081 16.6 0.1 0.0092 16.4 0.1 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_3 PF13192.6 gi|385804531|ref|YP_005840931.1| - 0.042 13.9 0.1 0.077 13.1 0.1 1.4 1 1 0 1 1 1 0 Thioredoxin domain GST_N PF02798.20 gi|385804531|ref|YP_005840931.1| - 0.093 13.1 0.0 0.11 12.8 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain TraG_N PF07916.11 gi|385804532|ref|YP_005840932.1| - 1.9 7.2 4.3 3.9 6.2 4.3 1.5 1 0 0 1 1 1 0 TraG-like protein, N-terminal region TRAM PF01938.20 gi|385804533|ref|YP_005840933.1| - 1.6e-10 40.8 1.6 3.1e-10 39.9 1.6 1.5 1 0 0 1 1 1 1 TRAM domain PI3K_1B_p101 PF10486.9 gi|385804533|ref|YP_005840933.1| - 0.14 9.9 3.6 0.16 9.7 3.6 1.0 1 0 0 1 1 1 0 Phosphoinositide 3-kinase gamma adapter protein p101 subunit PhnA_Zn_Ribbon PF08274.12 gi|385804534|ref|YP_005840934.1| - 0.00023 21.1 0.3 0.00029 20.7 0.3 1.1 1 0 0 1 1 1 1 PhnA Zinc-Ribbon zinc_ribbon_10 PF10058.9 gi|385804534|ref|YP_005840934.1| - 0.013 15.2 1.8 0.18 11.5 1.8 2.0 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein Prok-RING_4 PF14447.6 gi|385804534|ref|YP_005840934.1| - 0.013 15.3 0.5 4.1 7.3 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 TF_Zn_Ribbon PF08271.12 gi|385804534|ref|YP_005840934.1| - 0.037 13.6 1.1 0.19 11.2 0.2 2.0 2 0 0 2 2 2 0 TFIIB zinc-binding HypA PF01155.19 gi|385804534|ref|YP_005840934.1| - 0.046 13.7 0.5 0.063 13.3 0.5 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-Di19 PF05605.12 gi|385804534|ref|YP_005840934.1| - 0.052 13.9 1.2 0.18 12.1 0.2 1.9 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Elf1 PF05129.13 gi|385804534|ref|YP_005840934.1| - 0.067 13.2 2.8 0.098 12.7 0.2 1.9 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-Sec23_Sec24 PF04810.15 gi|385804534|ref|YP_005840934.1| - 0.09 12.8 1.7 0.86 9.7 1.9 2.0 1 1 0 1 1 1 0 Sec23/Sec24 zinc finger Zn_Tnp_IS1595 PF12760.7 gi|385804534|ref|YP_005840934.1| - 0.2 11.7 2.2 0.46 10.5 0.2 2.0 1 1 0 2 2 2 0 Transposase zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|385804534|ref|YP_005840934.1| - 0.21 11.8 2.8 0.42 10.8 2.8 1.5 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Lar_restr_allev PF14354.6 gi|385804534|ref|YP_005840934.1| - 0.32 11.4 4.9 3.7 8.0 0.9 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar PfkB PF00294.24 gi|385804535|ref|YP_005840935.1| - 2.5e-60 204.3 0.0 3e-60 204.1 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HTH_24 PF13412.6 gi|385804536|ref|YP_005840936.1| - 5.6e-14 51.4 0.2 9.4e-14 50.7 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|385804536|ref|YP_005840936.1| - 3.6e-12 45.9 0.2 3.6e-12 45.9 0.2 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|385804536|ref|YP_005840936.1| - 3.6e-07 30.0 0.0 6.6e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|385804536|ref|YP_005840936.1| - 1.5e-06 28.0 0.0 2.6e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|385804536|ref|YP_005840936.1| - 6.7e-06 26.1 0.0 1.2e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|385804536|ref|YP_005840936.1| - 1.1e-05 25.2 0.0 2e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|385804536|ref|YP_005840936.1| - 4.3e-05 23.5 0.1 8.7e-05 22.6 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|385804536|ref|YP_005840936.1| - 7.3e-05 22.5 0.0 0.00013 21.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.6 gi|385804536|ref|YP_005840936.1| - 7.4e-05 22.4 0.1 0.00012 21.8 0.1 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|385804536|ref|YP_005840936.1| - 0.00026 21.1 0.0 0.00055 20.1 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.12 gi|385804536|ref|YP_005840936.1| - 0.0006 19.5 0.0 0.001 18.8 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|385804536|ref|YP_005840936.1| - 0.0016 18.4 0.0 0.0032 17.4 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_10 PF04967.12 gi|385804536|ref|YP_005840936.1| - 0.0021 17.8 0.0 0.0052 16.6 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|385804536|ref|YP_005840936.1| - 0.0024 17.5 0.0 0.0041 16.8 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|385804536|ref|YP_005840936.1| - 0.0028 17.4 0.0 0.0052 16.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|385804536|ref|YP_005840936.1| - 0.0035 17.1 0.0 0.0068 16.1 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain Rrf2 PF02082.20 gi|385804536|ref|YP_005840936.1| - 0.0051 17.1 0.0 0.0091 16.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator GerE PF00196.19 gi|385804536|ref|YP_005840936.1| - 0.0066 16.0 0.0 0.015 14.8 0.0 1.5 2 0 0 2 2 1 1 Bacterial regulatory proteins, luxR family Put_DNA-bind_N PF06971.13 gi|385804536|ref|YP_005840936.1| - 0.0069 16.4 0.0 0.014 15.4 0.0 1.6 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus Sigma70_r4 PF04545.16 gi|385804536|ref|YP_005840936.1| - 0.008 15.7 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_50 PF18024.1 gi|385804536|ref|YP_005840936.1| - 0.0095 15.5 0.0 0.019 14.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain FaeA PF04703.12 gi|385804536|ref|YP_005840936.1| - 0.01 16.2 0.0 0.017 15.5 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein MarR PF01047.22 gi|385804536|ref|YP_005840936.1| - 0.015 15.2 0.0 0.025 14.5 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_3 PF01381.22 gi|385804536|ref|YP_005840936.1| - 0.021 14.9 0.0 0.15 12.1 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix HrcA_DNA-bdg PF03444.15 gi|385804536|ref|YP_005840936.1| - 0.027 14.1 0.0 0.045 13.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding GntR PF00392.21 gi|385804536|ref|YP_005840936.1| - 0.035 13.8 0.0 0.063 12.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_12 PF08461.10 gi|385804536|ref|YP_005840936.1| - 0.054 13.4 0.4 0.16 12.0 0.0 1.9 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_27 PF13463.6 gi|385804536|ref|YP_005840936.1| - 0.06 13.9 0.0 0.13 12.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|385804536|ref|YP_005840936.1| - 0.1 12.6 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|385804536|ref|YP_005840936.1| - 0.1 12.6 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Bac_rhodopsin PF01036.18 gi|385804537|ref|YP_005840937.1| - 3.6e-52 177.1 21.3 4.2e-52 176.9 21.3 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein DEAD PF00270.29 gi|385804538|ref|YP_005840938.1| - 1.6e-20 73.6 0.0 3.1e-20 72.7 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|385804538|ref|YP_005840938.1| - 3e-14 53.3 0.0 5.8e-14 52.4 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|385804538|ref|YP_005840938.1| - 2.7e-10 40.5 0.0 4.6e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit REC104 PF17378.2 gi|385804538|ref|YP_005840938.1| - 0.14 12.0 0.0 0.26 11.1 0.0 1.3 1 0 0 1 1 1 0 Meiotic recombination protein REC104 CBS PF00571.28 gi|385804539|ref|YP_005840939.1| - 2.5e-24 85.5 4.0 3.5e-15 56.2 0.2 2.6 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|385804539|ref|YP_005840939.1| - 4.6e-13 49.0 15.8 2.5e-09 36.8 0.1 3.4 1 1 2 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|385804539|ref|YP_005840939.1| - 0.00023 20.9 2.7 0.00023 20.9 2.7 2.4 1 1 1 3 3 3 1 Peptidase M50B-like GAF PF01590.26 gi|385804539|ref|YP_005840939.1| - 0.13 12.8 0.1 4.1 8.0 0.0 2.3 1 1 1 2 2 2 0 GAF domain DUF2933 PF11666.8 gi|385804539|ref|YP_005840939.1| - 0.39 10.8 0.0 0.39 10.8 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2933) HAD_2 PF13419.6 gi|385804540|ref|YP_005840940.1| - 1.8e-23 83.5 0.0 2.2e-23 83.3 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|385804540|ref|YP_005840940.1| - 2.7e-10 40.9 2.4 1.2e-09 38.8 2.4 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|385804540|ref|YP_005840940.1| - 1.1e-08 35.0 0.4 2.8e-08 33.7 0.4 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|385804540|ref|YP_005840940.1| - 3.4e-06 27.6 0.4 4.2e-06 27.3 0.4 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase NurA PF09376.10 gi|385804541|ref|YP_005840941.1| - 4e-13 49.6 0.0 5.2e-13 49.2 0.0 1.2 1 0 0 1 1 1 1 NurA domain DUF87 PF01935.17 gi|385804543|ref|YP_005840943.1| - 1.1e-10 42.0 0.0 5.3e-10 39.8 0.0 2.1 3 0 0 3 3 3 1 Helicase HerA, central domain DUF853 PF05872.12 gi|385804543|ref|YP_005840943.1| - 8.3e-06 24.7 0.2 0.013 14.2 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 gi|385804543|ref|YP_005840943.1| - 0.0019 17.2 0.0 0.24 10.3 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain TrwB_AAD_bind PF10412.9 gi|385804543|ref|YP_005840943.1| - 0.0024 16.9 0.0 0.027 13.4 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 gi|385804543|ref|YP_005840943.1| - 0.018 15.1 0.0 4.1 7.4 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|385804543|ref|YP_005840943.1| - 0.018 14.8 0.0 0.56 10.0 0.0 2.3 1 1 1 2 2 2 0 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|385804543|ref|YP_005840943.1| - 0.021 15.1 0.0 0.12 12.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|385804543|ref|YP_005840943.1| - 0.031 13.6 0.0 0.12 11.8 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family T2SSE PF00437.20 gi|385804543|ref|YP_005840943.1| - 0.066 12.3 0.0 0.14 11.1 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein DDE_3 PF13358.6 gi|385804545|ref|YP_005840945.1| - 2.4e-15 56.6 0.1 5.9e-15 55.3 0.0 1.8 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_32 PF13565.6 gi|385804545|ref|YP_005840945.1| - 1.1e-12 48.3 4.4 2.8e-12 47.1 0.0 3.1 3 1 1 4 4 4 1 Homeodomain-like domain HTH_33 PF13592.6 gi|385804545|ref|YP_005840945.1| - 2e-11 43.3 0.0 5.8e-10 38.7 0.0 2.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_29 PF13551.6 gi|385804545|ref|YP_005840945.1| - 1.4e-08 34.6 0.5 4.8e-08 32.9 0.0 2.2 3 0 0 3 3 3 1 Winged helix-turn helix HTH_23 PF13384.6 gi|385804545|ref|YP_005840945.1| - 2e-06 27.4 0.9 7.2e-06 25.6 0.1 2.3 2 0 0 2 2 2 1 Homeodomain-like domain DDE_1 PF03184.19 gi|385804545|ref|YP_005840945.1| - 0.00028 20.6 0.0 0.00051 19.8 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_28 PF13518.6 gi|385804545|ref|YP_005840945.1| - 0.00074 19.6 0.2 0.003 17.6 0.2 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|385804545|ref|YP_005840945.1| - 0.0012 18.9 0.0 0.003 17.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Colicin_Pyocin PF01320.18 gi|385804545|ref|YP_005840945.1| - 0.2 11.8 1.1 5.8 7.1 0.1 2.8 3 0 0 3 3 3 0 Colicin immunity protein / pyocin immunity protein SepF PF04472.12 gi|385804546|ref|YP_005840946.1| - 3.2e-14 52.9 1.4 4.4e-14 52.5 1.4 1.2 1 0 0 1 1 1 1 Cell division protein SepF UvrA_inter PF17760.1 gi|385804547|ref|YP_005840947.1| - 5.3e-31 106.9 0.0 2e-30 105.0 0.0 2.1 1 0 0 1 1 1 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 gi|385804547|ref|YP_005840947.1| - 6.8e-27 94.0 2.7 2.6e-24 85.7 0.1 3.9 4 0 0 4 4 4 1 UvrA DNA-binding domain ABC_tran PF00005.27 gi|385804547|ref|YP_005840947.1| - 5.1e-22 78.9 0.0 5.9e-12 46.3 0.0 4.3 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.19 gi|385804547|ref|YP_005840947.1| - 5e-13 49.0 0.0 0.024 14.1 0.0 4.2 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|385804547|ref|YP_005840947.1| - 8.4e-09 35.0 0.1 0.0024 17.6 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain DnaJ_CXXCXGXG PF00684.19 gi|385804547|ref|YP_005840947.1| - 3.1e-06 27.4 4.4 0.011 16.0 0.6 3.4 3 0 0 3 3 3 1 DnaJ central domain AAA_22 PF13401.6 gi|385804547|ref|YP_005840947.1| - 3.9e-06 27.2 0.0 0.22 11.8 0.0 3.2 3 0 0 3 3 2 2 AAA domain AAA_16 PF13191.6 gi|385804547|ref|YP_005840947.1| - 4e-06 27.3 1.0 0.041 14.3 0.0 3.5 4 1 1 5 5 2 2 AAA ATPase domain RsgA_GTPase PF03193.16 gi|385804547|ref|YP_005840947.1| - 1.8e-05 24.7 0.0 0.19 11.6 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_21 PF13304.6 gi|385804547|ref|YP_005840947.1| - 3e-05 24.0 6.9 0.12 12.2 0.0 4.4 4 0 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system ATPase PF06745.13 gi|385804547|ref|YP_005840947.1| - 4.6e-05 22.9 0.2 0.093 12.1 0.0 3.1 3 0 0 3 3 3 2 KaiC AAA_23 PF13476.6 gi|385804547|ref|YP_005840947.1| - 0.00062 20.3 1.7 0.18 12.3 0.3 3.4 3 1 0 3 3 3 1 AAA domain AAA_25 PF13481.6 gi|385804547|ref|YP_005840947.1| - 0.00064 19.3 0.0 1.2 8.7 0.0 3.0 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.6 gi|385804547|ref|YP_005840947.1| - 0.00069 19.4 0.0 0.29 10.8 0.0 3.6 4 0 0 4 4 4 1 AAA ATPase domain AAA_18 PF13238.6 gi|385804547|ref|YP_005840947.1| - 0.0012 19.4 0.1 1.5 9.4 0.0 3.1 3 0 0 3 3 2 1 AAA domain AAA_14 PF13173.6 gi|385804547|ref|YP_005840947.1| - 0.0038 17.3 0.0 1.3 9.1 0.0 3.4 4 0 0 4 4 3 1 AAA domain AAA_33 PF13671.6 gi|385804547|ref|YP_005840947.1| - 0.004 17.3 0.0 5.3 7.2 0.0 3.3 3 0 0 3 3 2 1 AAA domain APS_kinase PF01583.20 gi|385804547|ref|YP_005840947.1| - 0.0065 16.4 0.1 4.8 7.1 0.0 2.8 2 0 0 2 2 2 1 Adenylylsulphate kinase cobW PF02492.19 gi|385804547|ref|YP_005840947.1| - 0.0065 16.1 0.1 0.83 9.2 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|385804547|ref|YP_005840947.1| - 0.01 15.7 0.0 0.51 10.2 0.0 2.3 2 0 0 2 2 2 0 NACHT domain DUF2075 PF09848.9 gi|385804547|ref|YP_005840947.1| - 0.011 15.1 0.0 4.5 6.4 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|385804547|ref|YP_005840947.1| - 0.012 15.3 0.0 0.5 10.1 0.0 2.5 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ATPase_2 PF01637.18 gi|385804547|ref|YP_005840947.1| - 0.019 14.9 0.0 7.5 6.4 0.0 2.6 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|385804547|ref|YP_005840947.1| - 0.03 14.0 0.1 3.3 7.4 0.0 3.1 3 0 0 3 3 3 0 AAA domain NB-ARC PF00931.22 gi|385804547|ref|YP_005840947.1| - 0.093 11.9 0.0 1.2 8.2 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain PRK PF00485.18 gi|385804547|ref|YP_005840947.1| - 0.096 12.4 0.2 1.6 8.4 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family zinc_ribbon_9 PF14369.6 gi|385804547|ref|YP_005840947.1| - 0.11 12.8 0.3 8.3 6.8 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon RNA_helicase PF00910.22 gi|385804547|ref|YP_005840947.1| - 0.13 12.7 0.0 4.4 7.8 0.0 2.4 2 0 0 2 2 2 0 RNA helicase MMR_HSR1 PF01926.23 gi|385804547|ref|YP_005840947.1| - 0.15 12.1 0.3 5.9 7.0 0.0 3.2 4 0 0 4 4 2 0 50S ribosome-binding GTPase DUF3987 PF13148.6 gi|385804547|ref|YP_005840947.1| - 0.18 10.8 0.0 19 4.1 0.0 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3987) Zn-ribbon_8 PF09723.10 gi|385804547|ref|YP_005840947.1| - 0.3 11.3 4.7 17 5.6 0.1 3.4 3 0 0 3 3 3 0 Zinc ribbon domain HTH_12 PF08461.10 gi|385804547|ref|YP_005840947.1| - 0.31 11.0 1.6 14 5.7 0.4 2.6 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain Anti-TRAP PF15777.5 gi|385804547|ref|YP_005840947.1| - 6.3 6.8 6.6 36 4.4 0.0 3.6 3 1 0 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein GTP_EFTU PF00009.27 gi|385804550|ref|YP_005840950.1| - 3.7e-30 104.9 0.0 2.3e-29 102.4 0.0 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|385804550|ref|YP_005840950.1| - 1.9e-24 85.4 0.0 5.1e-24 84.0 0.0 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|385804550|ref|YP_005840950.1| - 1.1e-21 76.9 0.7 2.7e-21 75.7 0.7 1.7 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|385804550|ref|YP_005840950.1| - 3.7e-13 49.7 4.7 2.6e-09 37.3 0.0 3.1 3 0 0 3 3 3 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|385804550|ref|YP_005840950.1| - 1.7e-07 31.3 0.2 7.6e-07 29.2 0.0 2.2 2 1 0 2 2 2 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|385804550|ref|YP_005840950.1| - 0.013 15.3 0.0 0.043 13.6 0.0 2.0 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein Dynamin_N PF00350.23 gi|385804550|ref|YP_005840950.1| - 0.015 15.4 0.1 1.6 8.8 0.0 2.4 1 1 1 2 2 2 0 Dynamin family BDHCT PF08072.11 gi|385804550|ref|YP_005840950.1| - 0.15 12.2 0.0 0.34 11.0 0.0 1.6 1 0 0 1 1 1 0 BDHCT (NUC031) domain PRC PF05239.16 gi|385804551|ref|YP_005840951.1| - 2.8e-08 33.7 0.0 3.8e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 PRC-barrel domain MraZ PF02381.18 gi|385804551|ref|YP_005840951.1| - 0.058 13.4 0.0 0.091 12.8 0.0 1.3 1 0 0 1 1 1 0 MraZ protein, putative antitoxin-like DUF2171 PF09939.9 gi|385804551|ref|YP_005840951.1| - 0.069 13.4 0.5 12 6.3 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2171) HalOD1 PF18545.1 gi|385804551|ref|YP_005840951.1| - 0.074 13.3 0.1 0.18 12.1 0.1 1.6 1 1 0 1 1 1 0 Halobacterial output domain 1 PIN_6 PF17146.4 gi|385804552|ref|YP_005840952.1| - 2.7e-11 43.8 0.1 5.6e-11 42.8 0.0 1.5 2 0 0 2 2 2 1 PIN domain of ribonuclease Zn-ribbon_8 PF09723.10 gi|385804552|ref|YP_005840952.1| - 4.1e-05 23.6 2.1 8.9e-05 22.5 2.1 1.6 1 0 0 1 1 1 1 Zinc ribbon domain NOB1_Zn_bind PF08772.11 gi|385804552|ref|YP_005840952.1| - 0.00048 20.2 0.5 0.0009 19.3 0.5 1.4 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like PIN_5 PF08745.11 gi|385804552|ref|YP_005840952.1| - 0.0005 19.5 0.8 0.00065 19.2 0.7 1.3 1 1 0 1 1 1 1 PINc domain ribonuclease DNA_ligase_ZBD PF03119.16 gi|385804552|ref|YP_005840952.1| - 0.0022 18.0 1.8 0.037 14.0 0.2 2.6 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain HypA PF01155.19 gi|385804552|ref|YP_005840952.1| - 0.0043 17.1 1.6 0.0064 16.5 1.6 1.5 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C3HC4_3 PF13920.6 gi|385804552|ref|YP_005840952.1| - 0.0062 16.4 1.1 0.0088 15.9 1.1 1.2 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) Mut7-C PF01927.16 gi|385804552|ref|YP_005840952.1| - 0.0062 16.6 0.1 0.0081 16.3 0.1 1.2 1 0 0 1 1 1 1 Mut7-C RNAse domain zinc_ribbon_15 PF17032.5 gi|385804552|ref|YP_005840952.1| - 0.009 16.7 0.1 0.012 16.3 0.1 1.2 1 0 0 1 1 1 1 zinc-ribbon family zinc-ribbons_6 PF07191.12 gi|385804552|ref|YP_005840952.1| - 0.0092 15.9 0.5 0.014 15.3 0.5 1.2 1 0 0 1 1 1 1 zinc-ribbons DZR PF12773.7 gi|385804552|ref|YP_005840952.1| - 0.021 14.9 0.2 0.031 14.3 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon Zn_ribbon_SprT PF17283.2 gi|385804552|ref|YP_005840952.1| - 0.023 14.6 2.9 0.15 12.0 2.9 2.0 1 1 0 1 1 1 0 SprT-like zinc ribbon domain DUF4411 PF14367.6 gi|385804552|ref|YP_005840952.1| - 0.024 14.5 0.3 0.074 12.9 0.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4411) Prok-RING_4 PF14447.6 gi|385804552|ref|YP_005840952.1| - 0.034 14.0 1.1 0.059 13.2 1.1 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 Rad50_zn_hook PF04423.14 gi|385804552|ref|YP_005840952.1| - 0.04 13.7 1.1 0.18 11.7 0.8 2.2 1 1 1 2 2 2 0 Rad50 zinc hook motif RecR PF02132.15 gi|385804552|ref|YP_005840952.1| - 0.067 12.8 1.1 0.1 12.2 0.3 1.7 2 0 0 2 2 1 0 RecR protein zf-C2HC_2 PF13913.6 gi|385804552|ref|YP_005840952.1| - 0.088 12.7 1.1 0.088 12.7 1.1 2.3 1 1 1 2 2 2 0 zinc-finger of a C2HC-type zf-C2H2 PF00096.26 gi|385804552|ref|YP_005840952.1| - 0.18 12.3 1.3 2.5 8.7 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|385804552|ref|YP_005840952.1| - 0.39 11.7 1.6 14 6.8 0.2 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_2 PF13240.6 gi|385804552|ref|YP_005840952.1| - 0.73 9.6 5.2 0.5 10.2 3.5 1.6 2 0 0 2 2 2 0 zinc-ribbon domain CPBP PF02517.16 gi|385804553|ref|YP_005840953.1| - 5.5e-15 55.5 4.4 5.5e-15 55.5 4.4 2.6 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease Oxidored_q4 PF00507.19 gi|385804553|ref|YP_005840953.1| - 0.088 13.0 4.7 0.19 11.9 0.9 2.6 2 0 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AzlD PF05437.12 gi|385804554|ref|YP_005840954.1| - 1.4e-22 79.7 7.8 1.5e-22 79.6 7.8 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) Deltameth_res PF16020.5 gi|385804554|ref|YP_005840954.1| - 0.81 9.6 3.6 6.3 6.8 0.1 2.4 2 1 0 2 2 2 0 Deltamethrin resistance DUF5408 PF17402.2 gi|385804554|ref|YP_005840954.1| - 4.7 7.2 7.2 11 6.0 1.7 2.6 2 1 1 3 3 3 0 Family of unknown function (DUF5408) AzlC PF03591.14 gi|385804555|ref|YP_005840955.1| - 1.4e-37 129.1 6.8 1.4e-37 129.1 6.8 2.1 2 1 0 2 2 2 1 AzlC protein DUF2070 PF09843.9 gi|385804555|ref|YP_005840955.1| - 0.28 9.4 6.5 0.14 10.4 4.8 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) SpoIIIAH PF12685.7 gi|385804556|ref|YP_005840956.1| - 0.022 14.6 0.0 0.027 14.3 0.0 1.0 1 0 0 1 1 1 0 SpoIIIAH-like protein Phage_holin_2_4 PF16082.5 gi|385804556|ref|YP_005840956.1| - 0.1 12.3 1.1 0.19 11.5 1.1 1.4 1 0 0 1 1 1 0 Bacteriophage holin family, superfamily II-like UPF0552 PF10574.9 gi|385804556|ref|YP_005840956.1| - 0.21 10.9 6.8 0.25 10.6 6.8 1.1 1 0 0 1 1 1 0 Arp2/3-interacting proteins Arpin FixQ PF05545.11 gi|385804556|ref|YP_005840956.1| - 0.32 11.0 1.3 0.52 10.3 1.3 1.3 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ CPBP PF02517.16 gi|385804557|ref|YP_005840957.1| - 3.4e-15 56.2 2.0 3.4e-15 56.2 2.0 2.7 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease CEND1 PF15677.5 gi|385804557|ref|YP_005840957.1| - 0.16 12.5 1.3 0.37 11.4 1.3 1.6 1 0 0 1 1 1 0 Cell cycle exit and neuronal differentiation protein 1 NUDIX PF00293.28 gi|385804558|ref|YP_005840958.1| - 1e-11 45.0 0.1 1.3e-11 44.6 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain Arylsulfotrans PF05935.11 gi|385804559|ref|YP_005840959.1| - 0.00028 19.9 3.2 0.00095 18.2 0.7 2.4 1 1 0 2 2 2 1 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.6 gi|385804559|ref|YP_005840959.1| - 0.00042 19.8 1.2 0.016 14.6 1.0 2.5 1 1 0 1 1 1 1 Arylsulfotransferase (ASST) NHL PF01436.21 gi|385804559|ref|YP_005840959.1| - 0.48 10.6 9.1 2.2 8.5 0.1 4.4 5 0 0 5 5 5 0 NHL repeat Glyoxalase PF00903.25 gi|385804560|ref|YP_005840960.1| - 0.0045 17.2 0.2 0.011 15.9 0.2 1.7 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YdjM PF04307.14 gi|385804561|ref|YP_005840961.1| - 4.5e-15 55.4 15.6 5.7e-14 51.8 15.6 2.3 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase zf-CHY PF05495.12 gi|385804562|ref|YP_005840962.1| - 6.2e-10 39.4 0.8 3e-07 30.8 0.8 2.4 1 1 0 1 1 1 1 CHY zinc finger zinc_ribbon_9 PF14369.6 gi|385804562|ref|YP_005840962.1| - 0.012 15.9 6.4 0.083 13.2 0.2 3.2 3 1 0 3 3 3 0 zinc-ribbon Zn-C2H2_12 PF18112.1 gi|385804562|ref|YP_005840962.1| - 0.067 13.7 0.2 0.067 13.7 0.2 2.2 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain DZR PF12773.7 gi|385804562|ref|YP_005840962.1| - 0.096 12.7 9.9 0.12 12.4 5.2 2.8 1 1 1 2 2 2 0 Double zinc ribbon Prok-RING_1 PF14446.6 gi|385804562|ref|YP_005840962.1| - 0.23 11.4 7.3 0.23 11.4 3.0 2.6 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 ABC_transp_aux PF09822.9 gi|385804563|ref|YP_005840963.1| - 9.9e-06 25.2 0.0 3.9e-05 23.3 0.0 1.8 1 1 1 2 2 2 1 ABC-type uncharacterized transport system Peptidase_S49 PF01343.18 gi|385804564|ref|YP_005840964.1| - 5.1e-16 59.0 3.1 6e-07 29.5 0.0 2.3 2 0 0 2 2 2 2 Peptidase family S49 CLP_protease PF00574.23 gi|385804564|ref|YP_005840964.1| - 0.017 15.0 0.2 0.98 9.3 0.1 2.2 2 0 0 2 2 2 0 Clp protease Col_cuticle_N PF01484.17 gi|385804564|ref|YP_005840964.1| - 0.26 11.4 1.8 0.33 11.0 0.9 1.7 1 1 0 1 1 1 0 Nematode cuticle collagen N-terminal domain ABC2_membrane PF01061.24 gi|385804565|ref|YP_005840965.1| - 2.2e-28 99.1 20.3 2.6e-28 98.9 20.3 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|385804565|ref|YP_005840965.1| - 1.7e-05 24.1 19.7 1.7e-05 24.1 19.7 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|385804566|ref|YP_005840966.1| - 3.8e-30 105.2 0.0 5.7e-30 104.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385804566|ref|YP_005840966.1| - 1.2e-14 54.9 2.1 4e-09 36.7 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|385804566|ref|YP_005840966.1| - 4.1e-06 27.4 0.0 9e-06 26.3 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|385804566|ref|YP_005840966.1| - 0.0019 17.9 0.1 0.0082 15.9 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|385804566|ref|YP_005840966.1| - 0.0089 15.8 0.0 5.8 6.5 0.1 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|385804566|ref|YP_005840966.1| - 0.0093 16.5 1.1 0.023 15.2 0.8 1.5 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|385804566|ref|YP_005840966.1| - 0.015 14.8 0.0 2.5 7.5 0.1 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_24 PF13479.6 gi|385804566|ref|YP_005840966.1| - 0.035 13.8 0.3 2.4 7.9 0.1 2.3 2 0 0 2 2 2 0 AAA domain CLP1_P PF16575.5 gi|385804566|ref|YP_005840966.1| - 0.046 13.5 0.0 0.072 12.9 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_29 PF13555.6 gi|385804566|ref|YP_005840966.1| - 0.089 12.5 0.2 0.18 11.5 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|385804566|ref|YP_005840966.1| - 0.11 12.4 1.6 7 6.5 0.1 3.1 3 1 0 3 3 3 0 NTPase RsgA_GTPase PF03193.16 gi|385804566|ref|YP_005840966.1| - 0.11 12.3 0.1 0.22 11.4 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|385804566|ref|YP_005840966.1| - 0.15 12.1 0.0 0.42 10.7 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase PEP_mutase PF13714.6 gi|385804567|ref|YP_005840967.1| - 1.2e-40 139.5 0.1 1.5e-40 139.1 0.1 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.21 gi|385804567|ref|YP_005840967.1| - 2e-32 112.4 2.4 4.3e-16 58.5 0.0 2.1 1 1 1 2 2 2 2 Isocitrate lyase family Virulence_fact PF13769.6 gi|385804567|ref|YP_005840967.1| - 0.17 12.2 0.5 0.51 10.6 0.2 2.0 2 0 0 2 2 2 0 Virulence factor THUMP PF02926.17 gi|385804568|ref|YP_005840968.1| - 0.00046 20.3 0.0 0.00098 19.2 0.0 1.5 1 0 0 1 1 1 1 THUMP domain DnaJ_CXXCXGXG PF00684.19 gi|385804568|ref|YP_005840968.1| - 0.0032 17.8 2.4 0.0032 17.8 2.4 2.7 3 0 0 3 3 3 1 DnaJ central domain Anti-TRAP PF15777.5 gi|385804568|ref|YP_005840968.1| - 0.033 14.2 6.1 0.038 14.0 0.9 2.7 2 0 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein RNase_HII PF01351.18 gi|385804569|ref|YP_005840969.1| - 1.9e-34 119.2 0.0 2.8e-34 118.7 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease HII SecD_SecF PF02355.16 gi|385804570|ref|YP_005840970.1| - 2.3e-16 59.8 5.3 5.5e-16 58.5 5.3 1.6 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.15 gi|385804570|ref|YP_005840970.1| - 0.00057 18.9 13.1 0.0017 17.3 13.1 1.8 1 0 0 1 1 1 1 MMPL family Sterol-sensing PF12349.8 gi|385804570|ref|YP_005840970.1| - 0.0086 15.9 2.2 0.02 14.7 1.9 1.7 2 0 0 2 2 2 1 Sterol-sensing domain of SREBP cleavage-activation DUF4853 PF16145.5 gi|385804570|ref|YP_005840970.1| - 0.12 12.5 0.6 0.35 11.0 0.6 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4853) SecD_SecF PF02355.16 gi|385804571|ref|YP_005840971.1| - 2.1e-27 95.7 15.7 2.1e-27 95.7 15.7 1.7 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.14 gi|385804571|ref|YP_005840971.1| - 0.0064 15.9 0.3 0.017 14.6 0.3 1.8 1 0 0 1 1 1 1 SecD/SecF GG Motif Patched PF02460.18 gi|385804571|ref|YP_005840971.1| - 0.12 10.4 14.1 0.16 10.0 14.1 1.1 1 0 0 1 1 1 0 Patched family PgaD PF13994.6 gi|385804571|ref|YP_005840971.1| - 1.5 8.9 5.2 5.9 6.9 0.0 2.9 3 1 0 3 3 3 0 PgaD-like protein MARVEL PF01284.23 gi|385804573|ref|YP_005840973.1| - 0.1 12.7 12.5 0.15 12.1 1.2 2.4 1 1 1 2 2 2 0 Membrane-associating domain DUF2919 PF11143.8 gi|385804573|ref|YP_005840973.1| - 0.53 10.6 4.0 1.1 9.6 3.8 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2919) PGI PF00342.19 gi|385804574|ref|YP_005840974.1| - 3.1e-30 105.2 0.0 3.4e-26 91.9 0.0 2.1 2 0 0 2 2 2 2 Phosphoglucose isomerase Na_H_Exchanger PF00999.21 gi|385804575|ref|YP_005840975.1| - 1.2e-33 116.4 45.5 1.6e-33 116.0 45.5 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|385804575|ref|YP_005840975.1| - 1.3e-28 99.5 0.5 3.8e-28 98.1 0.5 1.8 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|385804575|ref|YP_005840975.1| - 1.2e-10 41.0 0.7 1.2e-10 41.0 0.7 2.7 3 0 0 3 3 3 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|385804575|ref|YP_005840975.1| - 3.4e-06 27.4 0.1 1e-05 25.9 0.1 1.9 2 0 0 2 2 1 1 Putative NAD(P)-binding F420_oxidored PF03807.17 gi|385804575|ref|YP_005840975.1| - 5.1e-05 23.8 1.4 0.17 12.5 0.1 3.9 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.27 gi|385804575|ref|YP_005840975.1| - 0.00021 21.8 1.3 0.0058 17.2 0.8 2.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Epimerase PF01370.21 gi|385804575|ref|YP_005840975.1| - 0.00064 19.3 0.8 0.00098 18.7 0.8 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family FAD_binding_3 PF01494.19 gi|385804575|ref|YP_005840975.1| - 0.0016 17.8 0.5 0.0024 17.2 0.5 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|385804575|ref|YP_005840975.1| - 0.004 17.2 0.3 0.077 13.0 0.1 2.6 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XdhC_C PF13478.6 gi|385804575|ref|YP_005840975.1| - 0.0042 17.6 0.0 0.01 16.3 0.0 1.7 1 0 0 1 1 1 1 XdhC Rossmann domain ApbA PF02558.16 gi|385804575|ref|YP_005840975.1| - 0.0069 16.0 0.4 0.02 14.5 0.4 1.8 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.6 gi|385804575|ref|YP_005840975.1| - 0.01 15.7 4.0 0.031 14.2 2.7 2.0 1 1 1 2 2 2 0 NAD(P)H-binding DAO PF01266.24 gi|385804575|ref|YP_005840975.1| - 0.013 15.1 0.2 0.022 14.4 0.2 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|385804575|ref|YP_005840975.1| - 0.017 14.4 2.0 0.019 14.2 0.3 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|385804575|ref|YP_005840975.1| - 0.019 14.8 0.3 0.019 14.8 0.3 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|385804575|ref|YP_005840975.1| - 0.039 13.0 0.1 0.058 12.4 0.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|385804575|ref|YP_005840975.1| - 0.065 13.5 0.1 0.21 11.8 0.1 1.9 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Sacchrp_dh_NADP PF03435.18 gi|385804575|ref|YP_005840975.1| - 0.11 12.7 0.3 0.33 11.2 0.3 1.9 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain CbiJ PF02571.14 gi|385804575|ref|YP_005840975.1| - 0.13 11.7 0.3 0.23 10.9 0.3 1.4 1 0 0 1 1 1 0 Precorrin-6x reductase CbiJ/CobK 2-Hacid_dh_C PF02826.19 gi|385804575|ref|YP_005840975.1| - 0.18 11.2 2.6 0.19 11.0 0.2 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AAA PF00004.29 gi|385804577|ref|YP_005840977.1| - 5.7e-40 136.8 0.0 2.3e-39 134.8 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|385804577|ref|YP_005840977.1| - 6.9e-09 35.4 0.1 1.8e-08 34.1 0.1 1.7 1 0 0 1 1 1 1 AAA+ lid domain AAA_18 PF13238.6 gi|385804577|ref|YP_005840977.1| - 1e-06 29.3 0.4 4.6e-05 24.0 0.0 2.8 3 0 0 3 3 2 1 AAA domain AAA_5 PF07728.14 gi|385804577|ref|YP_005840977.1| - 1.5e-06 28.3 0.0 8.9e-06 25.7 0.0 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|385804577|ref|YP_005840977.1| - 1.7e-06 28.3 0.0 1.2e-05 25.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|385804577|ref|YP_005840977.1| - 4.5e-05 23.7 2.1 0.0071 16.6 0.9 3.2 3 1 0 3 3 2 1 AAA domain RuvB_N PF05496.12 gi|385804577|ref|YP_005840977.1| - 4.8e-05 23.2 0.0 0.00013 21.7 0.0 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|385804577|ref|YP_005840977.1| - 5.9e-05 23.4 1.6 0.00014 22.2 0.0 2.6 3 0 0 3 3 2 1 AAA domain AAA_16 PF13191.6 gi|385804577|ref|YP_005840977.1| - 0.00017 22.0 1.1 0.0074 16.7 0.6 3.3 1 1 1 2 2 2 1 AAA ATPase domain AAA_2 PF07724.14 gi|385804577|ref|YP_005840977.1| - 0.00026 21.1 0.0 0.00063 19.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) T2SSE PF00437.20 gi|385804577|ref|YP_005840977.1| - 0.00083 18.5 0.0 0.0023 17.0 0.0 1.7 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_7 PF12775.7 gi|385804577|ref|YP_005840977.1| - 0.00089 18.8 0.0 0.004 16.7 0.0 2.1 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_17 PF13207.6 gi|385804577|ref|YP_005840977.1| - 0.0012 19.2 0.1 0.0042 17.5 0.0 2.1 2 0 0 2 2 1 1 AAA domain SKI PF01202.22 gi|385804577|ref|YP_005840977.1| - 0.0025 17.9 0.0 0.0061 16.7 0.0 1.7 1 0 0 1 1 1 1 Shikimate kinase TIP49 PF06068.13 gi|385804577|ref|YP_005840977.1| - 0.0026 17.0 0.0 0.0056 15.9 0.0 1.6 1 0 0 1 1 1 1 TIP49 P-loop domain Cytidylate_kin2 PF13189.6 gi|385804577|ref|YP_005840977.1| - 0.0036 17.5 0.0 0.011 15.9 0.0 1.8 1 0 0 1 1 1 1 Cytidylate kinase-like family AAA_25 PF13481.6 gi|385804577|ref|YP_005840977.1| - 0.0045 16.6 1.7 0.03 13.9 0.0 2.9 2 2 1 3 3 3 1 AAA domain MMR_HSR1 PF01926.23 gi|385804577|ref|YP_005840977.1| - 0.0079 16.3 0.0 0.018 15.1 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase TniB PF05621.11 gi|385804577|ref|YP_005840977.1| - 0.01 15.3 0.0 1.2 8.6 0.0 2.7 2 0 0 2 2 2 0 Bacterial TniB protein TsaE PF02367.17 gi|385804577|ref|YP_005840977.1| - 0.011 15.7 0.0 0.032 14.2 0.0 1.8 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Cytidylate_kin PF02224.18 gi|385804577|ref|YP_005840977.1| - 0.013 15.2 0.0 0.028 14.1 0.0 1.5 1 0 0 1 1 1 0 Cytidylate kinase RNA_helicase PF00910.22 gi|385804577|ref|YP_005840977.1| - 0.014 15.8 0.0 0.036 14.5 0.0 1.8 1 0 0 1 1 1 0 RNA helicase Rad17 PF03215.15 gi|385804577|ref|YP_005840977.1| - 0.015 15.2 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_11 PF13086.6 gi|385804577|ref|YP_005840977.1| - 0.018 14.9 0.0 0.04 13.7 0.0 1.7 2 0 0 2 2 1 0 AAA domain Sigma54_activ_2 PF14532.6 gi|385804577|ref|YP_005840977.1| - 0.019 15.1 0.0 0.037 14.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_14 PF13173.6 gi|385804577|ref|YP_005840977.1| - 0.021 14.9 0.0 0.087 12.9 0.0 2.1 2 0 0 2 2 1 0 AAA domain IstB_IS21 PF01695.17 gi|385804577|ref|YP_005840977.1| - 0.021 14.6 0.0 0.043 13.5 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein ABC_tran PF00005.27 gi|385804577|ref|YP_005840977.1| - 0.027 15.0 0.0 0.11 13.1 0.0 2.0 2 0 0 2 2 1 0 ABC transporter AAA_3 PF07726.11 gi|385804577|ref|YP_005840977.1| - 0.028 14.3 0.2 0.071 13.0 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|385804577|ref|YP_005840977.1| - 0.042 13.2 0.0 0.09 12.1 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|385804577|ref|YP_005840977.1| - 0.066 12.9 0.0 0.26 11.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|385804577|ref|YP_005840977.1| - 0.089 12.5 0.2 0.53 10.0 0.1 2.3 2 1 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|385804577|ref|YP_005840977.1| - 0.096 12.6 0.0 7.2 6.5 0.0 2.5 1 1 1 2 2 2 0 NACHT domain Zeta_toxin PF06414.12 gi|385804577|ref|YP_005840977.1| - 0.11 11.8 0.0 1.1 8.5 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin SRP54 PF00448.22 gi|385804577|ref|YP_005840977.1| - 0.12 11.9 0.0 0.4 10.3 0.0 1.9 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_19 PF13245.6 gi|385804577|ref|YP_005840977.1| - 0.13 12.5 6.5 0.79 10.0 0.4 3.6 3 2 0 3 3 2 0 AAA domain Lactamase_B_2 PF12706.7 gi|385804578|ref|YP_005840978.1| - 3.5e-18 65.9 0.2 4.6e-18 65.5 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|385804578|ref|YP_005840978.1| - 0.0005 20.1 1.1 0.00069 19.7 1.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily NifU PF01106.17 gi|385804580|ref|YP_005840980.1| - 1.3e-08 34.9 0.1 2e-08 34.3 0.1 1.4 1 0 0 1 1 1 1 NifU-like domain ROK PF00480.20 gi|385804581|ref|YP_005840981.1| - 3.6e-45 154.7 0.1 4.2e-45 154.5 0.1 1.0 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.20 gi|385804581|ref|YP_005840981.1| - 0.00028 20.5 0.4 0.00073 19.1 0.2 1.7 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.21 gi|385804581|ref|YP_005840981.1| - 0.015 14.9 0.1 0.036 13.6 0.1 1.7 1 1 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain DUF5611 PF18446.1 gi|385804582|ref|YP_005840982.1| - 3.8e-29 101.6 0.1 4.3e-29 101.4 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) zinc_ribbon_9 PF14369.6 gi|385804583|ref|YP_005840983.1| - 0.0016 18.7 4.5 0.17 12.2 0.0 3.2 3 0 0 3 3 3 2 zinc-ribbon DUF4379 PF14311.6 gi|385804583|ref|YP_005840983.1| - 0.11 12.9 0.4 0.11 12.9 0.4 2.1 2 0 0 2 2 2 0 Probable Zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|385804583|ref|YP_005840983.1| - 0.24 11.4 4.1 1.3 9.0 0.0 3.1 3 0 0 3 3 3 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|385804583|ref|YP_005840983.1| - 1.8 8.6 6.1 4.8 7.2 0.1 2.9 3 0 0 3 3 3 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|385804583|ref|YP_005840983.1| - 4.1 7.6 5.9 11 6.2 2.7 2.6 2 1 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|385804583|ref|YP_005840983.1| - 4.7 7.3 7.1 18 5.4 4.6 2.8 2 1 1 3 3 3 0 Transposase zinc-ribbon domain HTH_20 PF12840.7 gi|385804584|ref|YP_005840984.1| - 0.00033 20.7 0.1 0.00052 20.0 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|385804584|ref|YP_005840984.1| - 0.012 15.5 0.3 0.019 14.8 0.3 1.3 1 0 0 1 1 1 0 MarR family GntR PF00392.21 gi|385804584|ref|YP_005840984.1| - 0.033 13.8 0.0 0.049 13.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|385804584|ref|YP_005840984.1| - 0.059 13.3 0.0 0.078 12.9 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|385804584|ref|YP_005840984.1| - 0.066 13.6 0.0 0.11 12.9 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator DUF4845 PF16137.5 gi|385804584|ref|YP_005840984.1| - 0.091 13.6 0.3 0.15 12.9 0.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4845) HTH_47 PF16221.5 gi|385804584|ref|YP_005840984.1| - 0.15 11.6 0.2 0.2 11.2 0.2 1.2 1 0 0 1 1 1 0 winged helix-turn-helix GCV_T PF01571.21 gi|385804585|ref|YP_005840985.1| - 1.1e-31 110.1 0.0 1.5e-31 109.7 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|385804585|ref|YP_005840985.1| - 4.2e-11 42.6 0.0 1.3e-10 41.0 0.0 1.9 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain Transposase_23 PF03017.14 gi|385804585|ref|YP_005840985.1| - 0.11 12.4 0.1 0.28 11.2 0.1 1.6 1 0 0 1 1 1 0 TNP1/EN/SPM transposase FAD_binding_3 PF01494.19 gi|385804586|ref|YP_005840986.1| - 7e-16 58.4 3.5 6e-13 48.7 3.5 2.9 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|385804586|ref|YP_005840986.1| - 2.6e-07 30.2 0.2 1.4e-05 24.5 0.0 2.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|385804586|ref|YP_005840986.1| - 5.4e-07 29.0 1.1 0.016 14.3 0.0 2.5 2 1 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.24 gi|385804586|ref|YP_005840986.1| - 0.00038 20.1 4.5 0.076 12.6 0.1 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|385804586|ref|YP_005840986.1| - 0.0036 16.1 0.2 0.048 12.4 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 gi|385804586|ref|YP_005840986.1| - 0.01 15.2 0.1 0.014 14.8 0.1 1.1 1 0 0 1 1 1 0 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|385804586|ref|YP_005840986.1| - 0.012 14.7 4.5 0.2 10.7 0.7 2.2 1 1 0 2 2 2 0 FAD binding domain Pyr_redox_3 PF13738.6 gi|385804586|ref|YP_005840986.1| - 0.044 13.0 0.3 0.44 9.7 0.3 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|385804586|ref|YP_005840986.1| - 0.055 13.7 0.2 0.23 11.7 0.2 2.2 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain SE PF08491.10 gi|385804586|ref|YP_005840986.1| - 0.17 10.9 0.0 0.57 9.2 0.0 1.7 2 0 0 2 2 2 0 Squalene epoxidase PvlArgDC PF01862.16 gi|529167409|ref|YP_005840987.2| - 5.2e-34 117.4 0.3 5.7e-34 117.3 0.3 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) DUF2267 PF10025.9 gi|529167409|ref|YP_005840987.2| - 0.047 14.0 0.0 0.091 13.0 0.0 1.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2267) DUF3313 PF11769.8 gi|529167409|ref|YP_005840987.2| - 0.11 12.3 2.6 0.84 9.4 1.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3313) AAA PF00004.29 gi|385804588|ref|YP_005840988.1| - 5.7e-44 149.7 0.9 1.8e-43 148.2 0.1 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|385804588|ref|YP_005840988.1| - 8.9e-10 38.2 0.7 2.2e-09 37.0 0.7 1.7 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|385804588|ref|YP_005840988.1| - 2.6e-08 34.2 0.4 9.6e-08 32.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|385804588|ref|YP_005840988.1| - 7.2e-07 29.1 0.0 2.7e-06 27.2 0.0 1.9 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|385804588|ref|YP_005840988.1| - 1.1e-06 28.7 0.2 6.4e-06 26.2 0.2 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|385804588|ref|YP_005840988.1| - 1.7e-05 25.1 1.6 0.0005 20.3 0.3 2.8 2 1 0 2 2 1 1 AAA domain AAA_16 PF13191.6 gi|385804588|ref|YP_005840988.1| - 2e-05 25.0 5.5 0.00046 20.6 0.0 3.0 2 2 1 3 3 3 1 AAA ATPase domain AAA_18 PF13238.6 gi|385804588|ref|YP_005840988.1| - 0.00031 21.3 0.0 0.0078 16.8 0.0 2.6 2 1 0 2 2 2 1 AAA domain Prot_ATP_ID_OB PF16450.5 gi|385804588|ref|YP_005840988.1| - 0.00032 20.6 0.1 0.0011 18.8 0.1 2.0 2 0 0 2 2 1 1 Proteasomal ATPase OB C-terminal domain TIP49 PF06068.13 gi|385804588|ref|YP_005840988.1| - 0.00045 19.5 0.1 0.0012 18.1 0.0 1.6 1 1 0 1 1 1 1 TIP49 P-loop domain AAA_33 PF13671.6 gi|385804588|ref|YP_005840988.1| - 0.00086 19.5 0.0 0.0023 18.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|385804588|ref|YP_005840988.1| - 0.00089 19.5 0.2 0.011 16.0 0.0 2.5 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.13 gi|385804588|ref|YP_005840988.1| - 0.0013 18.0 0.0 0.0025 17.0 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_14 PF13173.6 gi|385804588|ref|YP_005840988.1| - 0.003 17.6 0.0 0.008 16.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|385804588|ref|YP_005840988.1| - 0.0032 16.9 0.0 0.0068 15.8 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_17 PF13207.6 gi|385804588|ref|YP_005840988.1| - 0.0041 17.6 1.2 0.031 14.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|385804588|ref|YP_005840988.1| - 0.0064 16.2 0.2 0.073 12.8 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|385804588|ref|YP_005840988.1| - 0.0072 16.1 0.0 0.018 14.7 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein NACHT PF05729.12 gi|385804588|ref|YP_005840988.1| - 0.0073 16.2 0.2 0.043 13.7 0.0 2.2 2 0 0 2 2 2 1 NACHT domain NB-ARC PF00931.22 gi|385804588|ref|YP_005840988.1| - 0.0091 15.2 0.0 0.029 13.6 0.0 1.9 1 1 0 1 1 1 1 NB-ARC domain ZapB PF06005.12 gi|385804588|ref|YP_005840988.1| - 0.0094 16.4 3.2 0.0094 16.4 3.2 1.9 2 0 0 2 2 1 1 Cell division protein ZapB AAA_11 PF13086.6 gi|385804588|ref|YP_005840988.1| - 0.011 15.5 0.2 0.093 12.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|385804588|ref|YP_005840988.1| - 0.012 15.1 0.3 0.074 12.6 0.0 2.2 3 0 0 3 3 2 0 P-loop containing dynein motor region NTPase_1 PF03266.15 gi|385804588|ref|YP_005840988.1| - 0.015 15.2 0.0 0.039 13.9 0.0 1.8 1 0 0 1 1 1 0 NTPase AAA_3 PF07726.11 gi|385804588|ref|YP_005840988.1| - 0.025 14.5 0.0 0.045 13.6 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|385804588|ref|YP_005840988.1| - 0.026 14.5 0.0 0.061 13.3 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PRKG1_interact PF15898.5 gi|385804588|ref|YP_005840988.1| - 0.026 15.4 4.9 0.034 15.0 3.7 1.7 2 0 0 2 2 1 0 cGMP-dependent protein kinase interacting domain Bac_DnaA PF00308.18 gi|385804588|ref|YP_005840988.1| - 0.027 14.3 0.0 2.1 8.1 0.0 2.4 2 0 0 2 2 2 0 Bacterial dnaA protein CASP_C PF08172.12 gi|385804588|ref|YP_005840988.1| - 0.03 13.7 3.8 0.052 12.9 3.5 1.5 1 1 0 1 1 1 0 CASP C terminal AAA_25 PF13481.6 gi|385804588|ref|YP_005840988.1| - 0.038 13.6 5.8 0.62 9.6 0.1 3.3 2 1 1 3 3 3 0 AAA domain Torsin PF06309.11 gi|385804588|ref|YP_005840988.1| - 0.04 14.0 0.0 0.078 13.1 0.0 1.4 1 0 0 1 1 1 0 Torsin CPT PF07931.12 gi|385804588|ref|YP_005840988.1| - 0.041 13.7 0.0 0.1 12.4 0.0 1.7 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_24 PF13479.6 gi|385804588|ref|YP_005840988.1| - 0.042 13.6 0.1 0.13 12.0 0.1 1.9 1 1 0 1 1 1 0 AAA domain Prot_ATP_OB_N PF17758.1 gi|385804588|ref|YP_005840988.1| - 0.044 13.4 0.1 0.13 11.9 0.1 1.8 1 0 0 1 1 1 0 Proteasomal ATPase OB N-terminal domain RNA_helicase PF00910.22 gi|385804588|ref|YP_005840988.1| - 0.044 14.2 0.0 0.091 13.2 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_30 PF13604.6 gi|385804588|ref|YP_005840988.1| - 0.055 13.2 0.2 0.14 11.9 0.2 1.8 1 1 0 1 1 1 0 AAA domain BLOC1_2 PF10046.9 gi|385804588|ref|YP_005840988.1| - 0.072 13.4 5.7 0.063 13.6 1.8 2.7 3 0 0 3 3 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ABC_tran PF00005.27 gi|385804588|ref|YP_005840988.1| - 0.082 13.4 0.2 0.28 11.7 0.0 2.1 2 1 0 2 2 1 0 ABC transporter Zeta_toxin PF06414.12 gi|385804588|ref|YP_005840988.1| - 0.089 12.1 0.1 0.23 10.7 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin zf-C4H2 PF10146.9 gi|385804588|ref|YP_005840988.1| - 0.15 12.4 0.2 0.22 11.8 0.2 1.3 1 0 0 1 1 1 0 Zinc finger-containing protein ATPase PF06745.13 gi|385804588|ref|YP_005840988.1| - 0.2 11.0 2.0 0.98 8.7 0.0 2.6 2 1 0 3 3 3 0 KaiC Parvo_NS1 PF01057.17 gi|385804588|ref|YP_005840988.1| - 0.2 10.7 0.0 0.35 9.9 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Snapin_Pallidin PF14712.6 gi|385804588|ref|YP_005840988.1| - 0.26 11.7 2.9 0.66 10.4 1.9 2.3 1 1 0 1 1 1 0 Snapin/Pallidin Spc7 PF08317.11 gi|385804588|ref|YP_005840988.1| - 0.39 9.6 4.5 0.71 8.7 4.5 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein Atrophin-1 PF03154.15 gi|385804588|ref|YP_005840988.1| - 0.57 8.4 3.2 0.72 8.1 0.2 1.9 1 1 1 2 2 2 0 Atrophin-1 family CENP-Q PF13094.6 gi|385804588|ref|YP_005840988.1| - 0.73 10.0 7.7 2.7 8.2 6.3 2.1 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit zf-HC2 PF13490.6 gi|385804588|ref|YP_005840988.1| - 2.2 8.6 4.8 4.8 7.5 0.1 3.2 3 0 0 3 3 3 0 Putative zinc-finger DUF1664 PF07889.12 gi|385804588|ref|YP_005840988.1| - 2.7 8.0 4.2 4.2 7.4 1.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) dUTPase PF00692.19 gi|385804589|ref|YP_005840989.1| - 2.4e-10 40.2 0.0 3.6e-10 39.6 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|385804589|ref|YP_005840989.1| - 0.028 13.2 0.0 0.078 11.8 0.0 1.8 1 1 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Aconitase PF00330.20 gi|385804590|ref|YP_005840990.1| - 2.7e-104 349.8 0.7 1.6e-102 343.9 0.7 2.2 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|385804590|ref|YP_005840990.1| - 2.8e-21 76.2 0.0 5.5e-21 75.3 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain Barwin PF00967.17 gi|385804590|ref|YP_005840990.1| - 0.058 13.3 0.1 0.2 11.5 0.0 1.9 2 0 0 2 2 2 0 Barwin family Acetyltransf_1 PF00583.25 gi|385804591|ref|YP_005840991.1| - 3.3e-16 59.6 0.0 4.2e-16 59.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|385804591|ref|YP_005840991.1| - 1e-13 51.3 0.0 1.2e-13 51.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|385804591|ref|YP_005840991.1| - 2.8e-09 37.2 0.0 3.8e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|385804591|ref|YP_005840991.1| - 4.6e-09 36.1 0.0 7.1e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|385804591|ref|YP_005840991.1| - 0.0056 16.4 0.0 0.0062 16.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|385804591|ref|YP_005840991.1| - 0.016 14.9 0.0 0.018 14.7 0.0 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_6 PF13480.7 gi|385804591|ref|YP_005840991.1| - 0.035 14.2 0.0 0.052 13.7 0.0 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|385804591|ref|YP_005840991.1| - 0.045 14.4 0.0 0.055 14.1 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|385804591|ref|YP_005840991.1| - 0.064 13.4 0.0 0.36 11.0 0.0 2.0 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain ATG11 PF10377.9 gi|385804591|ref|YP_005840991.1| - 0.11 12.6 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Autophagy-related protein 11 Acetyltransf_13 PF13880.6 gi|385804591|ref|YP_005840991.1| - 0.11 12.5 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Acetyltransf_9 PF13527.7 gi|385804591|ref|YP_005840991.1| - 0.17 11.9 0.0 0.8 9.8 0.0 2.0 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain NAD_binding_8 PF13450.6 gi|385804592|ref|YP_005840992.1| - 8.7e-15 54.7 0.2 2.5e-14 53.2 0.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 gi|385804592|ref|YP_005840992.1| - 1.7e-14 54.0 0.9 3.4e-07 29.9 0.0 2.2 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase DAO PF01266.24 gi|385804592|ref|YP_005840992.1| - 2.3e-05 24.1 1.7 6.7e-05 22.6 1.7 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|385804592|ref|YP_005840992.1| - 0.00015 21.7 0.1 0.11 12.5 0.1 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox_2 PF07992.14 gi|385804592|ref|YP_005840992.1| - 0.00051 19.4 3.3 0.0031 16.8 0.5 2.3 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|385804592|ref|YP_005840992.1| - 0.0018 17.6 1.7 0.02 14.2 1.5 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|385804592|ref|YP_005840992.1| - 0.0046 16.9 0.0 0.0076 16.2 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.17 gi|385804592|ref|YP_005840992.1| - 0.0068 15.7 0.2 0.011 15.1 0.2 1.2 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.14 gi|385804592|ref|YP_005840992.1| - 0.011 14.4 1.1 0.033 12.9 1.2 1.6 2 0 0 2 2 2 0 HI0933-like protein FAD_oxidored PF12831.7 gi|385804592|ref|YP_005840992.1| - 0.013 14.9 1.0 0.017 14.5 1.0 1.3 1 1 0 1 1 1 0 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|385804592|ref|YP_005840992.1| - 0.028 13.7 0.4 0.045 13.0 0.4 1.3 1 0 0 1 1 1 0 FAD binding domain ApbA PF02558.16 gi|385804592|ref|YP_005840992.1| - 0.028 14.1 0.1 6 6.5 0.0 2.2 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA GIDA PF01134.22 gi|385804592|ref|YP_005840992.1| - 0.11 11.6 1.6 0.18 10.9 1.6 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_binding_7 PF13241.6 gi|385804592|ref|YP_005840992.1| - 0.11 12.9 0.1 0.3 11.6 0.1 1.9 1 1 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox PF00070.27 gi|385804592|ref|YP_005840992.1| - 0.19 12.3 0.9 0.66 10.6 0.2 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|385804592|ref|YP_005840992.1| - 0.66 9.0 4.8 0.42 9.6 2.9 1.6 2 0 0 2 2 2 0 FAD binding domain PHP_C PF13263.6 gi|385804593|ref|YP_005840993.1| - 4.9e-22 77.4 0.3 2e-21 75.5 0.2 2.0 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|385804593|ref|YP_005840993.1| - 4.2e-07 30.4 0.0 4.9e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 PHP domain TfuA PF07812.12 gi|385804593|ref|YP_005840993.1| - 0.053 13.2 0.5 0.27 11.0 0.2 2.1 2 0 0 2 2 2 0 TfuA-like protein AsnC_trans_reg2 PF17805.1 gi|385804594|ref|YP_005840994.1| - 2e-42 143.2 0.1 4.5e-22 78.0 0.0 2.6 3 0 0 3 3 3 2 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|385804594|ref|YP_005840994.1| - 0.00021 21.1 0.3 0.0033 17.2 0.0 2.5 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|385804594|ref|YP_005840994.1| - 0.11 12.4 0.1 0.4 10.6 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.6 gi|385804594|ref|YP_005840994.1| - 0.13 11.8 0.0 0.74 9.4 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF3987 PF13148.6 gi|385804594|ref|YP_005840994.1| - 0.16 11.0 0.0 0.26 10.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) Glycos_transf_3 PF00591.21 gi|385804595|ref|YP_005840995.1| - 1.2e-30 106.9 0.0 2.5e-30 105.9 0.0 1.4 2 0 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|385804595|ref|YP_005840995.1| - 0.0028 17.5 0.1 0.013 15.3 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Pro_isomerase PF00160.21 gi|385804596|ref|YP_005840996.1| - 5.9e-51 172.9 0.0 6.6e-51 172.7 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Fer4_15 PF13459.6 gi|385804597|ref|YP_005840997.1| - 0.0054 17.4 0.5 0.0054 17.4 0.5 2.2 2 1 1 3 3 3 1 4Fe-4S single cluster domain Pox_A_type_inc PF04508.12 gi|385804598|ref|YP_005840998.1| - 0.013 15.3 0.6 0.036 13.9 0.6 1.7 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat DUF2663 PF10864.8 gi|385804598|ref|YP_005840998.1| - 0.049 14.0 1.8 0.11 12.9 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2663) DUF2207 PF09972.9 gi|385804598|ref|YP_005840998.1| - 4.9 5.8 14.5 45 2.6 12.2 2.9 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) DHHC PF01529.20 gi|385804598|ref|YP_005840998.1| - 7.1 6.7 7.4 12 6.0 0.2 3.2 1 1 2 3 3 3 0 DHHC palmitoyltransferase p450 PF00067.22 gi|385804599|ref|YP_005840999.1| - 7.6e-73 245.8 0.0 9.9e-73 245.4 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 Radical_SAM PF04055.21 gi|385804600|ref|YP_005841000.1| - 9.9e-14 52.0 0.0 1.5e-13 51.5 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily YdjM PF04307.14 gi|385804601|ref|YP_005841001.1| - 0.00028 20.3 13.7 0.0038 16.6 13.7 2.3 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Radical_SAM PF04055.21 gi|385804602|ref|YP_005841002.1| - 4.7e-11 43.4 0.0 2e-10 41.3 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily GPAT_N PF14829.6 gi|385804602|ref|YP_005841002.1| - 0.022 14.7 0.0 11 6.1 0.0 2.7 3 0 0 3 3 3 0 Glycerol-3-phosphate acyltransferase N-terminal KdpD PF02702.17 gi|385804602|ref|YP_005841002.1| - 0.024 14.1 0.0 0.042 13.3 0.0 1.3 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain SAICAR_synt PF01259.18 gi|385804603|ref|YP_005841003.1| - 1.7e-25 90.1 0.0 5.6e-24 85.1 0.0 2.0 1 1 0 1 1 1 1 SAICAR synthetase Formyl_trans_N PF00551.19 gi|385804604|ref|YP_005841004.1| - 3.1e-40 137.8 0.0 4.4e-40 137.3 0.0 1.2 1 0 0 1 1 1 1 Formyl transferase ACT_6 PF13740.6 gi|385804604|ref|YP_005841004.1| - 7.4e-10 38.7 0.4 1.7e-09 37.5 0.4 1.5 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|385804604|ref|YP_005841004.1| - 1.5e-06 27.9 0.6 5.8e-06 26.0 0.2 2.3 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|385804604|ref|YP_005841004.1| - 0.00019 22.0 0.6 0.00056 20.4 0.6 1.8 1 0 0 1 1 1 1 ACT domain DUF2525 PF10733.9 gi|385804604|ref|YP_005841004.1| - 0.0088 16.3 0.4 0.83 10.0 0.1 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF2525) MTS_N PF08468.11 gi|385804604|ref|YP_005841004.1| - 0.042 13.9 0.0 1.3 9.1 0.0 2.2 1 1 1 2 2 2 0 Methyltransferase small domain N-terminal ACT_7 PF13840.6 gi|385804604|ref|YP_005841004.1| - 0.064 13.0 0.1 0.16 11.8 0.1 1.6 1 0 0 1 1 1 0 ACT domain PurS PF02700.14 gi|385804605|ref|YP_005841005.1| - 4.5e-26 90.8 0.1 5.1e-26 90.6 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase AP_endonuc_2 PF01261.24 gi|385804605|ref|YP_005841005.1| - 0.044 13.2 0.0 0.046 13.2 0.0 1.1 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel GATase_5 PF13507.6 gi|385804606|ref|YP_005841006.1| - 7.6e-45 153.0 0.0 9.1e-45 152.8 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|385804606|ref|YP_005841006.1| - 3.9e-09 36.5 0.0 5.3e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|385804606|ref|YP_005841006.1| - 3.8e-06 26.6 0.0 4.8e-06 26.3 0.0 1.4 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|385804606|ref|YP_005841006.1| - 0.00023 21.0 0.0 0.00031 20.6 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family Peptidase_C26 PF07722.13 gi|385804606|ref|YP_005841006.1| - 0.0017 18.2 0.2 0.0095 15.7 0.2 1.9 1 1 0 1 1 1 1 Peptidase C26 AfsA PF03756.13 gi|385804608|ref|YP_005841008.1| - 0.047 13.7 1.2 2 8.4 0.1 2.9 3 0 0 3 3 3 0 A-factor biosynthesis hotdog domain Lactamase_B PF00753.27 gi|385804610|ref|YP_005841010.1| - 1.5e-21 77.3 3.5 2e-21 76.9 3.5 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|385804610|ref|YP_005841010.1| - 6.2e-07 29.1 1.6 1.4e-06 28.0 1.6 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain PDEase_II PF02112.15 gi|385804610|ref|YP_005841010.1| - 0.23 10.5 0.3 0.8 8.7 0.2 1.7 2 0 0 2 2 2 0 cAMP phosphodiesterases class-II Seryl_tRNA_N PF02403.22 gi|385804611|ref|YP_005841011.1| - 1.8e-27 95.7 6.0 2.6e-27 95.2 6.0 1.2 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain tRNA-synt_2b PF00587.25 gi|385804611|ref|YP_005841011.1| - 9.8e-27 94.1 0.0 2.7e-26 92.7 0.0 1.6 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) LUC7 PF03194.15 gi|385804611|ref|YP_005841011.1| - 0.0068 16.1 0.1 0.0089 15.7 0.1 1.1 1 0 0 1 1 1 1 LUC7 N_terminus FapA PF03961.13 gi|385804611|ref|YP_005841011.1| - 0.13 10.8 1.3 0.18 10.3 1.3 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A HIP1_clath_bdg PF16515.5 gi|385804611|ref|YP_005841011.1| - 0.21 12.2 4.3 0.41 11.3 4.3 1.4 1 0 0 1 1 1 0 Clathrin-binding domain of Huntingtin-interacting protein 1 tRNA-synt_His PF13393.6 gi|385804611|ref|YP_005841011.1| - 0.23 10.7 0.9 2.6 7.2 0.0 2.1 2 0 0 2 2 2 0 Histidyl-tRNA synthetase HalX PF08663.10 gi|385804611|ref|YP_005841011.1| - 0.79 10.1 5.1 1.9 8.8 5.1 1.6 1 0 0 1 1 1 0 HalX domain ZapB PF06005.12 gi|385804611|ref|YP_005841011.1| - 0.87 10.1 9.3 5.8 7.4 3.4 2.3 1 1 1 2 2 2 0 Cell division protein ZapB DUF1771 PF08590.10 gi|385804611|ref|YP_005841011.1| - 0.93 9.9 3.2 2.9 8.3 2.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1771) Ribo_biogen_C PF04034.13 gi|385804612|ref|YP_005841012.1| - 2.1e-42 143.8 0.0 2.7e-42 143.5 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|385804612|ref|YP_005841012.1| - 4.6e-09 36.0 0.0 6.8e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI NOG1_N PF17835.1 gi|385804613|ref|YP_005841013.1| - 4.3e-40 137.3 0.1 6.9e-40 136.6 0.1 1.3 1 0 0 1 1 1 1 NOG1 N-terminal helical domain MMR_HSR1 PF01926.23 gi|385804613|ref|YP_005841013.1| - 9.9e-23 80.4 0.0 2e-22 79.4 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.14 gi|385804613|ref|YP_005841013.1| - 5.4e-22 77.3 0.0 1.2e-21 76.2 0.0 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.18 gi|385804613|ref|YP_005841013.1| - 1.1e-12 47.8 0.0 1.6e-12 47.2 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|385804613|ref|YP_005841013.1| - 5.9e-09 36.2 0.2 0.0014 18.7 0.0 3.1 2 1 1 3 3 3 2 Dynamin family AIG1 PF04548.16 gi|385804613|ref|YP_005841013.1| - 0.0013 18.1 0.0 0.0022 17.3 0.0 1.5 1 0 0 1 1 1 1 AIG1 family AAA_16 PF13191.6 gi|385804613|ref|YP_005841013.1| - 0.0065 16.9 0.1 0.052 13.9 0.0 2.2 1 1 1 2 2 2 1 AAA ATPase domain DUF2451 PF10474.9 gi|385804613|ref|YP_005841013.1| - 0.019 14.8 0.1 0.031 14.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2451) RsgA_GTPase PF03193.16 gi|385804613|ref|YP_005841013.1| - 0.027 14.4 0.0 0.25 11.2 0.0 2.4 1 1 1 2 2 2 0 RsgA GTPase AAA_18 PF13238.6 gi|385804613|ref|YP_005841013.1| - 0.061 13.9 0.0 0.17 12.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain Roc PF08477.13 gi|385804613|ref|YP_005841013.1| - 0.087 13.0 0.0 2.3 8.5 0.0 2.7 3 0 0 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase Ras PF00071.22 gi|385804613|ref|YP_005841013.1| - 0.097 12.3 0.0 0.52 9.9 0.0 2.2 1 1 0 1 1 1 0 Ras family Hrs_helical PF12210.8 gi|385804613|ref|YP_005841013.1| - 0.13 12.8 0.9 14 6.3 0.1 2.5 2 0 0 2 2 2 0 Hepatocyte growth factor-regulated tyrosine kinase substrate Kinesin_assoc PF16183.5 gi|385804613|ref|YP_005841013.1| - 0.15 12.2 0.1 0.4 10.8 0.0 1.7 2 0 0 2 2 2 0 Kinesin-associated Adaptin_binding PF10199.9 gi|385804613|ref|YP_005841013.1| - 0.16 12.6 0.7 0.75 10.4 0.7 2.1 1 1 0 1 1 1 0 Alpha and gamma adaptin binding protein p34 DUF389 PF04087.14 gi|385804614|ref|YP_005841014.1| - 9.6e-34 116.4 19.8 9.6e-34 116.4 19.8 2.4 3 0 0 3 3 3 1 Domain of unknown function (DUF389) CoatB PF10389.9 gi|385804615|ref|YP_005841015.1| - 0.059 13.2 1.9 0.14 12.0 1.9 1.6 1 0 0 1 1 1 0 Bacteriophage coat protein B TrkA_N PF02254.18 gi|385804616|ref|YP_005841016.1| - 4.9e-25 88.0 1.0 8.1e-25 87.3 1.0 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|385804616|ref|YP_005841016.1| - 3.3e-08 33.2 0.7 5.5e-08 32.5 0.2 1.7 2 0 0 2 2 1 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|385804616|ref|YP_005841016.1| - 2.9e-06 27.6 0.3 5.6e-06 26.7 0.3 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|385804616|ref|YP_005841016.1| - 4.1e-06 26.3 0.1 5.1e-06 26.0 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain AdoHcyase_NAD PF00670.21 gi|385804616|ref|YP_005841016.1| - 3e-05 24.2 0.6 0.00014 22.0 0.3 2.0 1 1 1 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DAO PF01266.24 gi|385804616|ref|YP_005841016.1| - 5.6e-05 22.9 0.9 6.1e-05 22.8 0.9 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|385804616|ref|YP_005841016.1| - 0.0001 22.0 0.2 0.0002 21.0 0.2 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.14 gi|385804616|ref|YP_005841016.1| - 0.00025 20.4 0.5 0.00031 20.1 0.5 1.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|385804616|ref|YP_005841016.1| - 0.00068 19.8 0.4 0.0015 18.7 0.4 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|385804616|ref|YP_005841016.1| - 0.0021 18.6 0.5 0.0046 17.5 0.1 1.8 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|385804616|ref|YP_005841016.1| - 0.0021 17.3 0.1 0.0028 16.9 0.1 1.3 1 0 0 1 1 1 1 Thi4 family Sacchrp_dh_NADP PF03435.18 gi|385804616|ref|YP_005841016.1| - 0.0034 17.6 1.3 0.016 15.5 1.3 2.1 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain FAD_binding_2 PF00890.24 gi|385804616|ref|YP_005841016.1| - 0.0045 16.1 1.3 0.0061 15.7 1.3 1.2 1 0 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.18 gi|385804616|ref|YP_005841016.1| - 0.0071 16.2 1.2 0.0084 16.0 0.3 1.7 2 1 1 3 3 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|385804616|ref|YP_005841016.1| - 0.0073 15.6 1.0 0.013 14.9 0.8 1.4 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_2 PF03446.15 gi|385804616|ref|YP_005841016.1| - 0.009 16.2 0.7 0.22 11.7 0.1 2.3 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|385804616|ref|YP_005841016.1| - 0.009 15.7 0.1 0.014 15.0 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA XdhC_C PF13478.6 gi|385804616|ref|YP_005841016.1| - 0.0091 16.5 0.1 0.031 14.8 0.1 1.9 2 0 0 2 2 2 1 XdhC Rossmann domain IlvN PF07991.12 gi|385804616|ref|YP_005841016.1| - 0.018 14.6 0.2 0.035 13.7 0.2 1.5 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain HI0933_like PF03486.14 gi|385804616|ref|YP_005841016.1| - 0.019 13.7 0.1 0.033 12.9 0.1 1.4 1 0 0 1 1 1 0 HI0933-like protein Pyr_redox_3 PF13738.6 gi|385804616|ref|YP_005841016.1| - 0.052 12.8 0.1 0.094 12.0 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.17 gi|385804616|ref|YP_005841016.1| - 0.06 13.9 0.4 0.16 12.6 0.5 1.9 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|385804616|ref|YP_005841016.1| - 0.082 12.3 0.4 0.17 11.2 0.1 1.7 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF4043 PF13252.6 gi|385804616|ref|YP_005841016.1| - 0.13 11.3 0.0 0.55 9.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4043) UvrC_HhH_N PF08459.11 gi|385804616|ref|YP_005841016.1| - 0.15 11.9 0.1 0.74 9.7 0.0 1.9 1 1 1 2 2 2 0 UvrC Helix-hairpin-helix N-terminal YliH PF10799.8 gi|385804616|ref|YP_005841016.1| - 0.15 11.9 0.0 0.71 9.8 0.0 1.9 2 0 0 2 2 2 0 Biofilm formation protein (YliH/bssR) ABC2_membrane_2 PF12679.7 gi|385804617|ref|YP_005841017.1| - 0.11 11.8 8.9 0.13 11.6 8.9 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF4131 PF13567.6 gi|385804617|ref|YP_005841017.1| - 0.93 9.1 5.3 0.5 10.0 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Thymidylate_kin PF02223.17 gi|385804618|ref|YP_005841018.1| - 7.4e-39 133.3 0.0 8.7e-39 133.1 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|385804618|ref|YP_005841018.1| - 2.2e-09 37.4 0.0 3e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 Deoxynucleoside kinase AAA_33 PF13671.6 gi|385804618|ref|YP_005841018.1| - 1.4e-05 25.3 0.0 2.5e-05 24.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|385804618|ref|YP_005841018.1| - 0.00017 22.1 0.0 0.00047 20.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|385804618|ref|YP_005841018.1| - 0.0012 19.1 0.1 0.0015 18.8 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|385804618|ref|YP_005841018.1| - 0.0032 17.7 0.0 0.0073 16.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|385804618|ref|YP_005841018.1| - 0.0062 17.0 0.0 0.055 13.9 0.0 2.2 1 1 0 1 1 1 1 AAA domain CPT PF07931.12 gi|385804618|ref|YP_005841018.1| - 0.012 15.5 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_16 PF13191.6 gi|385804618|ref|YP_005841018.1| - 0.057 13.8 0.0 0.1 13.0 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain APS_kinase PF01583.20 gi|385804618|ref|YP_005841018.1| - 0.074 12.9 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase NAD_binding_10 PF13460.6 gi|385804619|ref|YP_005841019.1| - 2.6e-23 82.8 0.0 4.2e-23 82.2 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|385804619|ref|YP_005841019.1| - 1.1e-17 64.3 0.0 7.9e-17 61.5 0.0 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|385804619|ref|YP_005841019.1| - 1.6e-12 47.0 0.0 1e-10 41.1 0.0 2.1 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|385804619|ref|YP_005841019.1| - 7e-12 45.0 0.0 1.9e-06 27.2 0.0 2.2 2 1 0 2 2 2 2 RmlD substrate binding domain NmrA PF05368.13 gi|385804619|ref|YP_005841019.1| - 1.2e-05 25.0 0.0 1.8e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family NAD_binding_4 PF07993.12 gi|385804619|ref|YP_005841019.1| - 0.00017 20.8 0.0 0.022 14.0 0.0 2.3 2 0 0 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.15 gi|385804619|ref|YP_005841019.1| - 0.0002 20.6 0.1 0.0017 17.6 0.1 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein GDP_Man_Dehyd PF16363.5 gi|385804619|ref|YP_005841019.1| - 0.00039 19.9 0.0 0.00086 18.8 0.0 1.6 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase adh_short PF00106.25 gi|385804619|ref|YP_005841019.1| - 0.004 16.6 0.0 0.0063 16.0 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase Pyr_redox PF00070.27 gi|385804619|ref|YP_005841019.1| - 0.0086 16.6 0.0 0.019 15.5 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|385804619|ref|YP_005841019.1| - 0.019 14.6 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.18 gi|385804619|ref|YP_005841019.1| - 0.034 14.4 0.0 0.067 13.4 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain F420_oxidored PF03807.17 gi|385804619|ref|YP_005841019.1| - 0.043 14.4 0.0 0.16 12.5 0.0 1.9 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.14 gi|385804619|ref|YP_005841019.1| - 0.049 12.9 0.0 0.093 11.9 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase KR PF08659.10 gi|385804619|ref|YP_005841019.1| - 0.12 12.2 0.0 0.28 11.1 0.0 1.5 1 1 0 1 1 1 0 KR domain UDPG_MGDP_dh_N PF03721.14 gi|385804619|ref|YP_005841019.1| - 0.13 11.8 0.0 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Glyco_trans_4_4 PF13579.6 gi|385804619|ref|YP_005841019.1| - 0.15 12.5 0.0 0.24 11.9 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Tubulin PF00091.25 gi|385804620|ref|YP_005841020.1| - 4.3e-29 102.1 0.0 7.7e-29 101.3 0.0 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|385804620|ref|YP_005841020.1| - 0.00063 19.0 0.1 0.0012 18.2 0.1 1.6 1 1 0 1 1 1 1 Tubulin like DUF1771 PF08590.10 gi|385804621|ref|YP_005841021.1| - 0.0074 16.6 1.8 0.013 15.8 1.8 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1771) DUF4064 PF13273.6 gi|385804621|ref|YP_005841021.1| - 0.076 13.3 0.1 16 5.8 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) PTS_IIA PF02255.16 gi|385804621|ref|YP_005841021.1| - 0.083 12.9 4.4 0.071 13.2 2.4 1.8 1 1 1 2 2 2 0 PTS system, Lactose/Cellobiose specific IIA subunit DUF4134 PF13572.6 gi|385804621|ref|YP_005841021.1| - 0.13 12.6 3.9 0.85 9.9 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4134) HemY_N PF07219.13 gi|385804621|ref|YP_005841021.1| - 0.52 10.5 5.8 0.29 11.3 1.7 2.3 2 1 0 2 2 2 0 HemY protein N-terminus SMBP PF16785.5 gi|385804621|ref|YP_005841021.1| - 1.2 9.4 6.1 0.66 10.2 2.5 2.1 2 0 0 2 2 2 0 Small metal-binding protein CofC PF01983.16 gi|385804622|ref|YP_005841022.1| - 1.6e-36 125.6 0.0 1.5e-27 96.2 0.0 2.1 2 0 0 2 2 2 2 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|385804622|ref|YP_005841022.1| - 0.0093 16.3 0.1 0.024 15.0 0.1 1.7 1 1 0 1 1 1 1 MobA-like NTP transferase domain CPSF73-100_C PF11718.8 gi|385804622|ref|YP_005841022.1| - 0.0094 15.5 0.7 0.014 15.0 0.7 1.4 1 0 0 1 1 1 1 Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term DUF3236 PF11576.8 gi|385804622|ref|YP_005841022.1| - 0.018 14.8 0.1 0.039 13.6 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3236) RXLR PF16810.5 gi|385804622|ref|YP_005841022.1| - 0.17 12.3 2.1 0.15 12.5 0.7 1.6 2 0 0 2 2 2 0 RXLR phytopathogen effector protein, Avirulence activity MMR_HSR1 PF01926.23 gi|385804623|ref|YP_005841023.1| - 7.3e-18 64.7 0.0 1.1e-17 64.2 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|385804623|ref|YP_005841023.1| - 1.5e-12 47.4 0.0 2.2e-11 43.5 0.0 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|385804623|ref|YP_005841023.1| - 2.7e-05 23.8 0.0 0.0067 16.0 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|385804623|ref|YP_005841023.1| - 5.1e-05 23.2 0.0 0.012 15.5 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase AIG1 PF04548.16 gi|385804623|ref|YP_005841023.1| - 5.1e-05 22.7 0.0 9e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 AIG1 family AAA_18 PF13238.6 gi|385804623|ref|YP_005841023.1| - 0.0083 16.7 0.0 0.013 16.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|385804623|ref|YP_005841023.1| - 0.029 14.9 0.1 0.043 14.3 0.1 1.6 1 1 0 1 1 1 0 ABC transporter ATP_bind_1 PF03029.17 gi|385804623|ref|YP_005841023.1| - 0.045 13.5 0.7 0.75 9.5 0.0 2.2 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein Roc PF08477.13 gi|385804623|ref|YP_005841023.1| - 0.046 13.9 0.3 0.097 12.9 0.0 1.7 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Dynamin_N PF00350.23 gi|385804623|ref|YP_005841023.1| - 0.14 12.2 0.1 0.36 10.9 0.1 1.8 1 1 0 1 1 1 0 Dynamin family Prok-JAB PF14464.6 gi|385804624|ref|YP_005841024.1| - 8.1e-14 51.4 0.4 8.1e-14 51.4 0.4 1.5 2 0 0 2 2 2 1 Prokaryotic homologs of the JAB domain JAB PF01398.21 gi|385804624|ref|YP_005841024.1| - 2.1e-07 31.0 0.2 4.1e-07 30.0 0.0 1.5 2 0 0 2 2 2 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Rhodanese PF00581.20 gi|385804625|ref|YP_005841025.1| - 2.5e-15 56.9 0.0 2.7e-15 56.8 0.0 1.0 1 0 0 1 1 1 1 Rhodanese-like domain F420_ligase PF01996.16 gi|385804626|ref|YP_005841026.1| - 8.3e-56 189.1 0.0 1e-55 188.8 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Bac_luciferase PF00296.20 gi|385804627|ref|YP_005841027.1| - 3.5e-55 187.6 1.1 4.7e-55 187.2 1.1 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase GFO_IDH_MocA PF01408.22 gi|385804627|ref|YP_005841027.1| - 0.062 14.1 0.0 0.13 13.1 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DUF5455 PF17537.2 gi|385804628|ref|YP_005841028.1| - 0.52 10.7 5.6 0.66 10.4 5.6 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5455) ABC2_membrane PF01061.24 gi|385804628|ref|YP_005841028.1| - 0.89 8.9 8.5 1.1 8.7 8.5 1.1 1 0 0 1 1 1 0 ABC-2 type transporter TraH_2 PF06871.11 gi|385804629|ref|YP_005841029.1| - 0.54 9.9 4.3 0.7 9.5 4.3 1.3 1 0 0 1 1 1 0 TraH_2 Nudix_N_2 PF14803.6 gi|385804629|ref|YP_005841029.1| - 1.5 8.8 5.1 0.65 10.0 2.4 1.8 2 0 0 2 2 2 0 Nudix N-terminal DNA_RNApol_7kD PF03604.13 gi|385804629|ref|YP_005841029.1| - 10 5.9 6.6 9.2 6.0 1.3 2.5 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit MutL_C PF08676.11 gi|385804630|ref|YP_005841030.1| - 2.4e-27 95.5 0.0 5e-27 94.5 0.0 1.5 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 gi|385804630|ref|YP_005841030.1| - 3.5e-26 91.2 0.1 6.1e-26 90.4 0.1 1.4 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 gi|385804630|ref|YP_005841030.1| - 9.6e-12 44.9 0.5 3.9e-11 42.9 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|385804630|ref|YP_005841030.1| - 1.3e-05 25.6 1.0 3e-05 24.5 0.2 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MutS_V PF00488.21 gi|385804631|ref|YP_005841031.1| - 2.1e-77 259.4 0.3 4.7e-77 258.3 0.3 1.6 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.18 gi|385804631|ref|YP_005841031.1| - 1.3e-35 123.4 4.2 3e-35 122.2 4.2 1.7 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.20 gi|385804631|ref|YP_005841031.1| - 2.7e-33 114.6 0.0 6.1e-33 113.4 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.18 gi|385804631|ref|YP_005841031.1| - 4.3e-27 94.3 0.4 1.2e-26 92.8 0.1 2.0 2 0 0 2 2 2 1 MutS family domain IV MutS_II PF05188.17 gi|385804631|ref|YP_005841031.1| - 7.2e-11 42.5 0.0 1.8e-10 41.3 0.0 1.7 1 0 0 1 1 1 1 MutS domain II AAA_14 PF13173.6 gi|385804631|ref|YP_005841031.1| - 0.02 15.0 0.0 0.052 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|385804631|ref|YP_005841031.1| - 0.033 14.7 0.0 0.14 12.7 0.1 2.1 1 1 0 1 1 1 0 ABC transporter AAA_23 PF13476.6 gi|385804631|ref|YP_005841031.1| - 0.035 14.6 0.6 0.37 11.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|385804631|ref|YP_005841031.1| - 0.048 13.4 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain CENP-T_C PF15511.6 gi|385804631|ref|YP_005841031.1| - 0.11 12.6 0.5 0.25 11.5 0.5 1.6 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T histone fold Arena_nucleocap PF00843.17 gi|385804631|ref|YP_005841031.1| - 0.13 11.1 0.2 0.22 10.4 0.2 1.2 1 0 0 1 1 1 0 Arenavirus nucleocapsid N-terminal domain AAA_3 PF07726.11 gi|385804632|ref|YP_005841032.1| - 1.9e-58 196.0 0.3 3.4e-58 195.1 0.3 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|385804632|ref|YP_005841032.1| - 5.2e-17 61.5 0.7 1.3e-16 60.2 0.7 1.7 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|385804632|ref|YP_005841032.1| - 1.9e-12 47.3 0.0 8.7e-12 45.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|385804632|ref|YP_005841032.1| - 1.7e-07 31.8 0.0 1.4e-06 28.8 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|385804632|ref|YP_005841032.1| - 4e-05 23.4 0.0 0.0041 16.8 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|385804632|ref|YP_005841032.1| - 0.0008 18.9 0.1 0.0028 17.0 0.0 1.9 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_lid_8 PF17868.1 gi|385804632|ref|YP_005841032.1| - 0.0068 16.3 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 AAA lid domain RuvB_N PF05496.12 gi|385804632|ref|YP_005841032.1| - 0.0078 16.0 0.0 0.03 14.1 0.0 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 gi|385804632|ref|YP_005841032.1| - 0.03 13.4 0.0 0.054 12.6 0.0 1.5 1 0 0 1 1 1 0 MCM P-loop domain NACHT PF05729.12 gi|385804632|ref|YP_005841032.1| - 0.17 11.8 0.0 0.31 10.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain DUF58 PF01882.18 gi|385804633|ref|YP_005841033.1| - 2.1e-21 76.0 0.1 4.3e-21 75.0 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 Transglut_core PF01841.19 gi|385804634|ref|YP_005841034.1| - 2e-27 95.9 0.4 7.7e-27 94.0 0.0 2.3 2 1 1 3 3 3 1 Transglutaminase-like superfamily Transglut_core3 PF13471.6 gi|385804634|ref|YP_005841034.1| - 9.6e-06 25.5 0.3 5.2e-05 23.1 0.0 2.5 2 2 0 2 2 2 1 Transglutaminase-like superfamily DUF4129 PF13559.6 gi|385804634|ref|YP_005841034.1| - 0.00035 20.8 6.5 0.001 19.3 6.5 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) DUF3488 PF11992.8 gi|385804634|ref|YP_005841034.1| - 0.00046 19.2 0.3 0.00046 19.2 0.3 3.3 2 1 1 3 3 3 1 Domain of unknown function (DUF3488) DUF4218 PF13960.6 gi|385804634|ref|YP_005841034.1| - 0.0042 16.7 0.0 0.0095 15.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4218) SUI1 PF01253.22 gi|385804635|ref|YP_005841035.1| - 3.5e-22 78.7 0.0 4.3e-22 78.4 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|385804635|ref|YP_005841035.1| - 0.0043 17.3 0.0 0.0062 16.8 0.0 1.5 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.15 gi|385804635|ref|YP_005841035.1| - 0.014 15.1 0.3 0.017 14.8 0.3 1.1 1 0 0 1 1 1 0 DTW domain NUDIX PF00293.28 gi|385804636|ref|YP_005841036.1| - 5.9e-12 45.8 0.1 8.5e-12 45.2 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain zf-C2H2_9 PF16293.5 gi|385804638|ref|YP_005841038.1| - 0.00012 21.9 0.0 0.00025 20.8 0.0 1.6 1 0 0 1 1 1 1 C2H2 type zinc-finger (1 copy) CBM39 PF15886.5 gi|385804638|ref|YP_005841038.1| - 0.03 14.2 1.1 0.078 12.9 0.7 1.8 2 0 0 2 2 2 0 Carbohydrate binding domain (family 32) DUF3090 PF11290.8 gi|385804638|ref|YP_005841038.1| - 1.8 8.3 6.5 3.4 7.5 1.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3090) GATase PF00117.28 gi|385804639|ref|YP_005841039.1| - 1e-40 139.6 0.0 2e-29 102.7 0.0 2.0 1 1 1 2 2 2 2 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|385804639|ref|YP_005841039.1| - 7.5e-05 22.6 0.1 0.00081 19.2 0.1 2.4 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.18 gi|385804640|ref|YP_005841040.1| - 3e-89 299.0 0.2 1.2e-87 293.7 0.1 2.2 2 0 0 2 2 2 2 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|385804640|ref|YP_005841040.1| - 7.9e-20 71.5 3.8 2.2e-18 66.8 0.1 3.8 2 2 1 3 3 3 1 Anthranilate synthase component I, N terminal region PRAI PF00697.22 gi|385804641|ref|YP_005841041.1| - 5.8e-37 127.3 0.7 7.1e-37 127.1 0.7 1.1 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase His_biosynth PF00977.21 gi|385804641|ref|YP_005841041.1| - 0.012 15.1 2.4 0.071 12.6 2.4 2.3 1 1 0 1 1 1 0 Histidine biosynthesis protein TMP-TENI PF02581.17 gi|385804641|ref|YP_005841041.1| - 0.072 12.4 4.0 0.046 13.1 1.4 1.8 1 1 0 2 2 2 0 Thiamine monophosphate synthase Glycos_transf_3 PF00591.21 gi|385804642|ref|YP_005841042.1| - 7.5e-92 307.5 3.6 9.3e-92 307.2 3.6 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|385804642|ref|YP_005841042.1| - 8.6e-15 54.3 3.5 9.6e-15 54.2 1.5 2.1 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.8 gi|385804642|ref|YP_005841042.1| - 0.067 12.9 0.0 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2717) LMWPc PF01451.21 gi|385804643|ref|YP_005841043.1| - 2.3e-27 96.1 0.5 4e-27 95.3 0.5 1.4 1 1 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase PAD_N PF08526.10 gi|385804643|ref|YP_005841043.1| - 0.055 13.8 0.1 0.07 13.5 0.1 1.2 1 0 0 1 1 1 0 Protein-arginine deiminase (PAD) N-terminal domain Fer2 PF00111.27 gi|385804644|ref|YP_005841044.1| - 4.2e-12 45.8 0.2 1.7e-11 43.9 0.1 1.9 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain DnaJ PF00226.31 gi|385804644|ref|YP_005841044.1| - 4.5e-09 36.3 0.0 7.9e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.6 gi|385804644|ref|YP_005841044.1| - 0.0015 18.4 0.0 0.0026 17.6 0.0 1.4 1 0 0 1 1 1 1 A repeated domain in UCH-protein Fer2_3 PF13085.6 gi|385804644|ref|YP_005841044.1| - 0.0078 16.2 0.1 0.015 15.3 0.1 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain CBS PF00571.28 gi|385804645|ref|YP_005841045.1| - 2.4e-35 120.8 11.3 1.3e-12 47.9 0.7 4.4 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.19 gi|385804645|ref|YP_005841045.1| - 0.0085 16.9 0.0 0.13 13.1 0.0 2.7 2 2 0 2 2 2 1 Sigma 54 modulation protein / S30EA ribosomal protein Vert_HS_TF PF06546.11 gi|385804645|ref|YP_005841045.1| - 0.084 12.5 0.6 0.12 12.0 0.6 1.1 1 0 0 1 1 1 0 Vertebrate heat shock transcription factor Rad51 PF08423.11 gi|385804646|ref|YP_005841046.1| - 4e-28 98.4 0.0 5.1e-28 98.0 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|385804646|ref|YP_005841046.1| - 1.6e-08 34.4 0.8 3.6e-08 33.2 0.8 1.7 1 1 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|385804646|ref|YP_005841046.1| - 2.7e-08 33.6 0.5 9e-08 31.9 0.5 1.8 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|385804646|ref|YP_005841046.1| - 1.8e-07 30.7 0.1 4.7e-06 26.1 0.0 2.3 2 1 0 2 2 2 1 KaiC AAA_24 PF13479.6 gi|385804646|ref|YP_005841046.1| - 3.2e-06 27.0 0.0 5.2e-06 26.3 0.0 1.3 1 1 0 1 1 1 1 AAA domain Zot PF05707.12 gi|385804646|ref|YP_005841046.1| - 4.3e-05 23.3 0.0 5.6e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) DnaB_C PF03796.15 gi|385804646|ref|YP_005841046.1| - 6.2e-05 22.5 0.0 0.00017 21.0 0.0 1.7 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_16 PF13191.6 gi|385804646|ref|YP_005841046.1| - 0.0021 18.5 0.3 0.0041 17.5 0.3 1.4 1 1 0 1 1 1 1 AAA ATPase domain PAXNEB PF05625.11 gi|385804646|ref|YP_005841046.1| - 0.0034 16.6 0.2 0.024 13.8 0.3 2.0 2 0 0 2 2 2 1 PAXNEB protein ATPase_2 PF01637.18 gi|385804646|ref|YP_005841046.1| - 0.092 12.6 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Big_3_3 PF13750.6 gi|385804647|ref|YP_005841047.1| - 0.056 13.1 0.0 0.095 12.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) DUF460 PF04312.13 gi|385804647|ref|YP_005841047.1| - 0.084 12.6 0.5 0.18 11.5 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF460) DUF111 PF01969.17 gi|385804648|ref|YP_005841048.1| - 1.7e-119 399.2 5.0 2.7e-119 398.6 5.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF111 CDC45 PF02724.14 gi|385804648|ref|YP_005841048.1| - 2.2 6.5 8.8 3 6.0 8.8 1.1 1 0 0 1 1 1 0 CDC45-like protein SLC12 PF03522.15 gi|385804648|ref|YP_005841048.1| - 2.7 6.9 5.4 3.6 6.5 5.4 1.1 1 0 0 1 1 1 0 Solute carrier family 12 Zip PF02535.22 gi|385804648|ref|YP_005841048.1| - 4.4 6.4 12.2 6.6 5.8 12.2 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter Presenilin PF01080.17 gi|385804648|ref|YP_005841048.1| - 4.5 5.9 10.0 6.3 5.4 10.0 1.1 1 0 0 1 1 1 0 Presenilin SAPS PF04499.15 gi|385804648|ref|YP_005841048.1| - 5.3 5.7 9.4 7.4 5.2 9.4 1.1 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein SelP_N PF04592.14 gi|385804648|ref|YP_005841048.1| - 9.2 5.6 15.0 17 4.7 15.0 1.5 1 0 0 1 1 1 0 Selenoprotein P, N terminal region AAA PF00004.29 gi|385804649|ref|YP_005841049.1| - 7.4e-101 333.8 0.0 2.3e-49 167.2 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|385804649|ref|YP_005841049.1| - 2.1e-30 104.7 0.0 9.7e-30 102.6 0.1 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|385804649|ref|YP_005841049.1| - 1.3e-29 101.7 4.0 1.4e-14 53.6 0.8 2.5 2 0 0 2 2 2 2 AAA+ lid domain CDC48_2 PF02933.17 gi|385804649|ref|YP_005841049.1| - 5.9e-17 61.2 0.1 3.4e-16 58.8 0.1 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|385804649|ref|YP_005841049.1| - 7.4e-16 59.0 0.0 3.9e-06 27.4 0.1 4.0 2 2 1 3 3 3 2 AAA ATPase domain RuvB_N PF05496.12 gi|385804649|ref|YP_005841049.1| - 1.3e-15 57.5 0.0 6.4e-07 29.3 0.0 3.1 3 0 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|385804649|ref|YP_005841049.1| - 1.6e-13 50.8 0.3 3.4e-05 23.8 0.0 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|385804649|ref|YP_005841049.1| - 1.1e-12 48.4 0.0 1.7e-05 25.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|385804649|ref|YP_005841049.1| - 4.5e-12 46.4 0.6 0.0015 18.8 0.1 4.4 2 2 2 4 4 4 2 AAA domain TIP49 PF06068.13 gi|385804649|ref|YP_005841049.1| - 1.2e-11 44.5 0.0 3.9e-05 23.0 0.0 3.1 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|385804649|ref|YP_005841049.1| - 9.7e-11 42.0 0.0 0.00015 21.9 0.0 2.8 3 0 0 3 3 2 2 AAA domain AAA_14 PF13173.6 gi|385804649|ref|YP_005841049.1| - 1.1e-08 35.2 0.0 0.00095 19.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|385804649|ref|YP_005841049.1| - 3.5e-08 33.4 0.0 0.0092 15.7 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_25 PF13481.6 gi|385804649|ref|YP_005841049.1| - 1.5e-07 31.2 0.3 2.1 7.9 0.0 4.4 4 0 0 4 4 4 1 AAA domain AAA_18 PF13238.6 gi|385804649|ref|YP_005841049.1| - 2.3e-07 31.4 0.0 0.031 14.8 0.0 3.0 2 1 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|385804649|ref|YP_005841049.1| - 7.5e-07 28.7 0.1 0.043 13.2 0.0 2.7 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|385804649|ref|YP_005841049.1| - 1.1e-06 28.3 0.0 0.027 14.0 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|385804649|ref|YP_005841049.1| - 1.5e-06 28.6 0.0 0.069 13.5 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Sigma54_activat PF00158.26 gi|385804649|ref|YP_005841049.1| - 3.2e-06 26.9 0.0 0.11 12.2 0.0 3.2 2 1 0 2 2 2 2 Sigma-54 interaction domain AAA_28 PF13521.6 gi|385804649|ref|YP_005841049.1| - 7.4e-06 26.3 0.4 0.038 14.2 0.0 2.7 3 0 0 3 3 2 2 AAA domain ATPase PF06745.13 gi|385804649|ref|YP_005841049.1| - 1e-05 25.0 0.3 0.5 9.7 0.0 3.6 3 0 0 3 3 3 2 KaiC AAA_3 PF07726.11 gi|385804649|ref|YP_005841049.1| - 1.9e-05 24.5 0.0 0.22 11.4 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|385804649|ref|YP_005841049.1| - 2e-05 25.1 0.0 0.47 11.0 0.0 2.9 2 0 0 2 2 2 2 ABC transporter TsaE PF02367.17 gi|385804649|ref|YP_005841049.1| - 2.7e-05 24.2 0.0 0.17 11.8 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|385804649|ref|YP_005841049.1| - 2.7e-05 24.0 0.0 0.13 11.9 0.0 2.7 3 0 0 3 3 2 2 AAA domain PhoH PF02562.16 gi|385804649|ref|YP_005841049.1| - 3.3e-05 23.4 0.3 0.44 10.0 0.0 3.1 3 0 0 3 3 3 2 PhoH-like protein DUF2075 PF09848.9 gi|385804649|ref|YP_005841049.1| - 4.8e-05 22.8 0.1 0.34 10.1 0.0 2.6 3 0 0 3 3 3 2 Uncharacterized conserved protein (DUF2075) DUF815 PF05673.13 gi|385804649|ref|YP_005841049.1| - 5.1e-05 22.6 0.0 0.38 9.9 0.0 2.6 2 1 0 2 2 2 2 Protein of unknown function (DUF815) Zeta_toxin PF06414.12 gi|385804649|ref|YP_005841049.1| - 5.4e-05 22.6 0.4 0.095 12.0 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin AAA_11 PF13086.6 gi|385804649|ref|YP_005841049.1| - 5.4e-05 23.1 0.1 0.31 10.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.22 gi|385804649|ref|YP_005841049.1| - 6.3e-05 22.3 0.0 0.12 11.5 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain Parvo_NS1 PF01057.17 gi|385804649|ref|YP_005841049.1| - 0.0002 20.6 0.1 0.24 10.4 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_30 PF13604.6 gi|385804649|ref|YP_005841049.1| - 0.0002 21.1 1.7 0.51 10.0 0.0 3.1 3 0 0 3 3 2 2 AAA domain AAA_17 PF13207.6 gi|385804649|ref|YP_005841049.1| - 0.00034 21.1 0.1 0.89 10.0 0.0 3.6 4 0 0 4 4 2 1 AAA domain ATPase_2 PF01637.18 gi|385804649|ref|YP_005841049.1| - 0.00041 20.3 0.0 1.2 9.0 0.0 3.6 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|385804649|ref|YP_005841049.1| - 0.00077 19.4 0.3 0.57 10.1 0.0 3.0 4 0 0 4 4 2 1 NACHT domain Sigma54_activ_2 PF14532.6 gi|385804649|ref|YP_005841049.1| - 0.00084 19.5 0.0 1.6 8.9 0.0 2.6 2 0 0 2 2 2 1 Sigma-54 interaction domain Vps4_C PF09336.10 gi|385804649|ref|YP_005841049.1| - 0.001 19.0 1.6 0.28 11.2 0.0 2.9 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain AAA_19 PF13245.6 gi|385804649|ref|YP_005841049.1| - 0.0011 19.3 0.9 1.6 9.0 0.0 2.9 2 1 1 3 3 2 1 AAA domain NTPase_1 PF03266.15 gi|385804649|ref|YP_005841049.1| - 0.0013 18.7 0.3 3.7 7.4 0.0 3.4 3 1 1 4 4 2 0 NTPase Bac_DnaA PF00308.18 gi|385804649|ref|YP_005841049.1| - 0.0018 18.1 0.1 3.2 7.5 0.0 3.3 3 1 0 3 3 3 0 Bacterial dnaA protein Cytidylate_kin PF02224.18 gi|385804649|ref|YP_005841049.1| - 0.003 17.3 0.1 2.3 7.9 0.0 2.4 2 0 0 2 2 2 1 Cytidylate kinase IPT PF01745.16 gi|385804649|ref|YP_005841049.1| - 0.0036 16.7 0.8 1.2 8.5 0.0 2.8 3 0 0 3 3 3 1 Isopentenyl transferase SKI PF01202.22 gi|385804649|ref|YP_005841049.1| - 0.0086 16.2 0.0 5.5 7.1 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase ResIII PF04851.15 gi|385804649|ref|YP_005841049.1| - 0.01 15.8 0.0 7 6.6 0.0 2.6 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit TniB PF05621.11 gi|385804649|ref|YP_005841049.1| - 0.012 15.0 0.0 10 5.5 0.0 3.5 4 0 0 4 4 4 0 Bacterial TniB protein Torsin PF06309.11 gi|385804649|ref|YP_005841049.1| - 0.019 15.1 0.0 4.6 7.4 0.0 2.7 3 0 0 3 3 2 0 Torsin Cytidylate_kin2 PF13189.6 gi|385804649|ref|YP_005841049.1| - 0.02 15.0 0.0 8 6.6 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase-like family CPT PF07931.12 gi|385804649|ref|YP_005841049.1| - 0.023 14.5 0.0 3.8 7.3 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein KAP_NTPase PF07693.14 gi|385804649|ref|YP_005841049.1| - 0.028 13.7 0.0 4.9 6.3 0.0 3.2 2 2 1 4 4 4 0 KAP family P-loop domain Hydin_ADK PF17213.3 gi|385804649|ref|YP_005841049.1| - 0.032 14.5 0.1 4.1 7.6 0.0 2.4 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain AFG1_ATPase PF03969.16 gi|385804649|ref|YP_005841049.1| - 0.036 13.0 0.0 1.8 7.4 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase Rad17 PF03215.15 gi|385804649|ref|YP_005841049.1| - 0.038 13.9 0.0 6.4 6.7 0.0 2.6 2 1 0 2 2 2 0 Rad17 P-loop domain Zot PF05707.12 gi|385804649|ref|YP_005841049.1| - 0.046 13.4 0.0 4.3 6.9 0.0 2.5 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Viral_helicase1 PF01443.18 gi|385804649|ref|YP_005841049.1| - 0.049 13.4 0.0 4.2 7.0 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_29 PF13555.6 gi|385804649|ref|YP_005841049.1| - 0.074 12.8 0.0 16 5.3 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain Guanylate_kin PF00625.21 gi|385804649|ref|YP_005841049.1| - 0.14 11.8 0.3 46 3.6 0.0 3.5 3 1 1 4 4 3 0 Guanylate kinase PUA PF01472.20 gi|385804650|ref|YP_005841050.1| - 2.7e-16 59.3 2.5 4.3e-16 58.6 2.5 1.4 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|385804650|ref|YP_005841050.1| - 0.027 14.7 0.1 0.04 14.2 0.1 1.3 1 0 0 1 1 1 0 UPF0113 PUA domain Sipho_tail PF05709.11 gi|385804650|ref|YP_005841050.1| - 0.029 13.8 0.0 0.039 13.4 0.0 1.3 1 1 0 1 1 1 0 Phage tail protein zf-3CxxC_2 PF17180.4 gi|385804651|ref|YP_005841051.1| - 0.013 16.2 3.3 0.031 15.0 3.3 1.6 1 0 0 1 1 1 0 Zinc-binding domain ADD_ATRX PF17981.1 gi|385804651|ref|YP_005841051.1| - 0.03 14.2 3.1 0.088 12.7 0.7 2.1 2 0 0 2 2 2 0 Cysteine Rich ADD domain DZR PF12773.7 gi|385804651|ref|YP_005841051.1| - 0.066 13.3 2.3 0.11 12.5 1.6 1.7 2 0 0 2 2 2 0 Double zinc ribbon zf-B_box PF00643.24 gi|385804651|ref|YP_005841051.1| - 0.13 12.4 2.8 1.1 9.5 0.8 2.3 2 0 0 2 2 2 0 B-box zinc finger Tnp_zf-ribbon_2 PF13842.6 gi|385804651|ref|YP_005841051.1| - 0.35 11.7 5.9 0.56 11.1 0.5 2.4 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon RNB PF00773.19 gi|385804652|ref|YP_005841052.1| - 6.5e-83 278.8 0.5 1.2e-81 274.5 0.5 2.1 1 1 0 1 1 1 1 RNB domain DUF982 PF06169.12 gi|385804652|ref|YP_005841052.1| - 0.012 15.6 0.0 0.03 14.4 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF982) SopA PF13981.6 gi|385804652|ref|YP_005841052.1| - 0.13 12.7 0.0 0.63 10.5 0.0 2.1 3 0 0 3 3 3 0 SopA-like central domain FF PF01846.19 gi|385804652|ref|YP_005841052.1| - 0.4 10.9 2.5 34 4.7 0.0 4.0 4 0 0 4 4 4 0 FF domain zf-P11 PF03854.14 gi|385804653|ref|YP_005841053.1| - 0.082 12.6 0.2 0.12 12.1 0.2 1.3 1 0 0 1 1 1 0 P-11 zinc finger Peripla_BP_6 PF13458.6 gi|385804654|ref|YP_005841054.1| - 1.7e-50 172.6 2.1 2.1e-50 172.3 2.1 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|385804654|ref|YP_005841054.1| - 4.2e-16 59.0 0.1 2.3e-15 56.5 0.1 1.9 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|385804654|ref|YP_005841054.1| - 2.6e-12 46.4 0.3 1.2e-11 44.2 0.3 2.0 1 1 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.9 gi|385804654|ref|YP_005841054.1| - 0.00035 20.3 2.4 0.0011 18.7 2.4 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|385804654|ref|YP_005841054.1| - 0.1 12.0 0.1 0.37 10.2 0.1 2.0 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BPD_transp_2 PF02653.16 gi|385804655|ref|YP_005841055.1| - 2.1e-42 145.1 41.7 2.6e-42 144.8 41.7 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|385804656|ref|YP_005841056.1| - 2.6e-37 128.5 36.7 3.6e-37 128.0 36.7 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|385804657|ref|YP_005841057.1| - 9.7e-29 100.6 0.0 1.4e-28 100.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385804657|ref|YP_005841057.1| - 4.6e-12 46.4 2.7 3.1e-06 27.2 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|385804657|ref|YP_005841057.1| - 2.3e-11 43.3 0.1 5e-11 42.3 0.1 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 gi|385804657|ref|YP_005841057.1| - 6e-06 26.9 0.4 8.2e-06 26.5 0.4 1.5 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|385804657|ref|YP_005841057.1| - 5.2e-05 23.3 0.0 0.00028 21.0 0.0 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase SMC_N PF02463.19 gi|385804657|ref|YP_005841057.1| - 0.00019 20.9 0.5 0.0031 17.0 0.5 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|385804657|ref|YP_005841057.1| - 0.00023 21.6 0.0 0.00048 20.5 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|385804657|ref|YP_005841057.1| - 0.00028 20.6 0.0 0.00061 19.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|385804657|ref|YP_005841057.1| - 0.0012 18.8 0.1 0.0025 17.8 0.0 1.5 2 0 0 2 2 2 1 RsgA GTPase AAA_15 PF13175.6 gi|385804657|ref|YP_005841057.1| - 0.006 16.3 0.3 0.5 10.0 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain FeoB_N PF02421.18 gi|385804657|ref|YP_005841057.1| - 0.0089 15.6 1.4 0.4 10.2 0.1 3.0 3 0 0 3 3 3 1 Ferrous iron transport protein B RNA_helicase PF00910.22 gi|385804657|ref|YP_005841057.1| - 0.031 14.7 0.0 0.065 13.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Mg_chelatase PF01078.21 gi|385804657|ref|YP_005841057.1| - 0.078 12.3 0.0 0.19 11.1 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NTPase_1 PF03266.15 gi|385804657|ref|YP_005841057.1| - 0.091 12.7 0.1 3.6 7.5 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_22 PF13401.6 gi|385804657|ref|YP_005841057.1| - 0.12 12.7 0.1 0.38 11.0 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|385804657|ref|YP_005841057.1| - 0.13 12.0 0.0 0.32 10.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|385804657|ref|YP_005841057.1| - 0.14 11.2 0.1 0.64 9.0 0.0 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein ABC_tran PF00005.27 gi|385804658|ref|YP_005841058.1| - 3.5e-33 115.0 0.0 4.8e-33 114.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385804658|ref|YP_005841058.1| - 4.6e-15 56.2 1.2 1.2e-06 28.6 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385804658|ref|YP_005841058.1| - 1.1e-06 28.3 0.2 6e-06 25.9 0.2 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|385804658|ref|YP_005841058.1| - 8.1e-06 25.8 0.0 1.4e-05 25.0 0.0 1.4 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|385804658|ref|YP_005841058.1| - 0.00016 21.3 0.1 0.00033 20.3 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|385804658|ref|YP_005841058.1| - 0.00059 19.8 0.1 0.0013 18.7 0.1 1.5 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 gi|385804658|ref|YP_005841058.1| - 0.0011 19.2 0.2 0.0057 16.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|385804658|ref|YP_005841058.1| - 0.0013 19.2 0.2 0.002 18.6 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|385804658|ref|YP_005841058.1| - 0.0052 17.2 0.0 0.11 12.9 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|385804658|ref|YP_005841058.1| - 0.0089 15.8 0.0 0.014 15.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|385804658|ref|YP_005841058.1| - 0.014 15.5 0.0 0.018 15.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|385804658|ref|YP_005841058.1| - 0.014 15.4 0.0 0.021 14.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 gi|385804658|ref|YP_005841058.1| - 0.025 14.7 0.1 0.052 13.6 0.1 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.12 gi|385804658|ref|YP_005841058.1| - 0.043 13.7 0.2 0.11 12.5 0.1 1.7 2 0 0 2 2 2 0 NACHT domain Rad17 PF03215.15 gi|385804658|ref|YP_005841058.1| - 0.047 13.6 0.0 0.057 13.3 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_16 PF13191.6 gi|385804658|ref|YP_005841058.1| - 0.052 13.9 0.0 0.08 13.3 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.6 gi|385804658|ref|YP_005841058.1| - 0.065 12.9 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|385804658|ref|YP_005841058.1| - 0.069 13.5 0.0 0.12 12.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ATP_bind_1 PF03029.17 gi|385804658|ref|YP_005841058.1| - 0.11 12.3 0.1 0.17 11.7 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_7 PF12775.7 gi|385804658|ref|YP_005841058.1| - 0.12 11.9 0.1 0.16 11.5 0.1 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region NB-ARC PF00931.22 gi|385804658|ref|YP_005841058.1| - 0.16 11.1 0.1 0.24 10.6 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain ATPase_2 PF01637.18 gi|385804658|ref|YP_005841058.1| - 0.18 11.7 0.0 0.3 11.0 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea ADH_N PF08240.12 gi|385804659|ref|YP_005841059.1| - 2.1e-27 95.2 0.9 4.1e-27 94.2 0.9 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|385804659|ref|YP_005841059.1| - 4.9e-10 39.5 0.1 1.1e-09 38.3 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_assoc PF13823.6 gi|385804659|ref|YP_005841059.1| - 1.1e-08 34.8 0.5 2.9e-08 33.5 0.5 1.8 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated Glu_dehyd_C PF16912.5 gi|385804659|ref|YP_005841059.1| - 0.012 15.1 0.1 0.055 13.0 0.0 2.0 3 0 0 3 3 3 0 Glucose dehydrogenase C-terminus AlaDh_PNT_C PF01262.21 gi|385804659|ref|YP_005841059.1| - 0.024 13.9 0.0 0.041 13.2 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|385804659|ref|YP_005841059.1| - 0.085 11.5 0.1 0.34 9.6 0.1 1.8 2 0 0 2 2 2 0 HI0933-like protein zf-DBF PF07535.12 gi|385804659|ref|YP_005841059.1| - 0.83 9.8 3.2 1.5 9.0 3.2 1.4 1 0 0 1 1 1 0 DBF zinc finger cobW PF02492.19 gi|385804661|ref|YP_005841061.1| - 5.5e-51 172.6 0.0 7.3e-51 172.3 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 gi|385804661|ref|YP_005841061.1| - 1.7e-22 79.2 0.0 3.4e-22 78.2 0.0 1.5 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain GTP_EFTU PF00009.27 gi|385804661|ref|YP_005841061.1| - 0.00021 20.9 0.0 0.31 10.6 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|385804661|ref|YP_005841061.1| - 0.00026 20.9 0.0 0.02 14.8 0.0 2.4 2 0 0 2 2 2 1 RsgA GTPase T2SSE PF00437.20 gi|385804661|ref|YP_005841061.1| - 0.00087 18.4 0.1 0.0014 17.8 0.1 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.6 gi|385804661|ref|YP_005841061.1| - 0.0031 17.8 0.0 0.0062 16.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|385804661|ref|YP_005841061.1| - 0.0072 16.3 0.0 0.011 15.7 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|385804661|ref|YP_005841061.1| - 0.0082 16.5 0.0 0.018 15.4 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain TsaE PF02367.17 gi|385804661|ref|YP_005841061.1| - 0.013 15.5 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE dNK PF01712.19 gi|385804661|ref|YP_005841061.1| - 0.014 15.3 0.0 0.046 13.6 0.0 1.8 2 0 0 2 2 2 0 Deoxynucleoside kinase ABC_tran PF00005.27 gi|385804661|ref|YP_005841061.1| - 0.024 15.1 0.0 0.045 14.3 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_33 PF13671.6 gi|385804661|ref|YP_005841061.1| - 0.025 14.7 0.0 0.045 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|385804661|ref|YP_005841061.1| - 0.025 14.8 0.0 0.055 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|385804661|ref|YP_005841061.1| - 0.031 14.8 0.0 0.055 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|385804661|ref|YP_005841061.1| - 0.043 13.9 0.1 0.14 12.2 0.1 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase TrwB_AAD_bind PF10412.9 gi|385804661|ref|YP_005841061.1| - 0.045 12.7 0.0 0.063 12.2 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_29 PF13555.6 gi|385804661|ref|YP_005841061.1| - 0.075 12.8 0.0 0.21 11.3 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|385804661|ref|YP_005841061.1| - 0.087 13.4 0.0 0.25 11.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain Septin PF00735.18 gi|385804661|ref|YP_005841061.1| - 0.14 11.4 0.0 2.9 7.1 0.0 2.2 2 0 0 2 2 2 0 Septin ATP_bind_1 PF03029.17 gi|385804661|ref|YP_005841061.1| - 0.17 11.6 0.0 0.65 9.7 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein NTPase_1 PF03266.15 gi|385804661|ref|YP_005841061.1| - 0.19 11.7 0.0 0.29 11.0 0.0 1.3 1 0 0 1 1 1 0 NTPase TFIIS_C PF01096.18 gi|385804662|ref|YP_005841062.1| - 2.3e-17 62.6 2.5 2.3e-17 62.6 2.5 3.0 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|385804662|ref|YP_005841062.1| - 1.2e-07 31.5 2.0 1.2e-07 31.5 2.0 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DZR PF12773.7 gi|385804662|ref|YP_005841062.1| - 9e-05 22.4 11.3 0.00018 21.5 0.9 3.0 2 1 0 2 2 2 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|385804662|ref|YP_005841062.1| - 0.00093 19.1 10.9 0.012 15.6 1.4 2.9 2 1 1 3 3 3 1 Putative transposase DNA-binding domain TackOD1 PF18551.1 gi|385804662|ref|YP_005841062.1| - 0.0012 18.6 3.3 0.54 9.9 1.2 2.1 1 1 1 2 2 2 2 Thaumarchaeal output domain 1 zf-RRN7 PF11781.8 gi|385804662|ref|YP_005841062.1| - 0.0028 17.3 7.9 15 5.4 0.1 4.2 4 0 0 4 4 4 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-NADH-PPase PF09297.11 gi|385804662|ref|YP_005841062.1| - 0.0036 16.9 0.7 0.0036 16.9 0.7 3.0 3 0 0 3 3 3 1 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|385804662|ref|YP_005841062.1| - 0.009 15.5 15.5 6 6.5 6.0 4.2 3 1 0 3 3 3 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|385804662|ref|YP_005841062.1| - 0.012 15.6 7.1 0.021 14.8 0.4 2.8 2 1 0 2 2 2 0 Transposase zinc-ribbon domain Prok-RING_1 PF14446.6 gi|385804662|ref|YP_005841062.1| - 0.018 14.9 8.4 0.072 13.0 2.0 3.0 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 HypA PF01155.19 gi|385804662|ref|YP_005841062.1| - 0.019 15.0 7.2 9.3 6.3 7.2 2.5 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|385804662|ref|YP_005841062.1| - 0.02 14.3 16.8 0.046 13.2 2.4 3.8 3 1 0 3 3 3 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|385804662|ref|YP_005841062.1| - 0.039 13.9 8.5 6.3 6.8 0.1 4.1 4 0 0 4 4 4 0 Nudix N-terminal PHF5 PF03660.14 gi|385804662|ref|YP_005841062.1| - 0.057 13.6 3.9 0.84 9.9 0.7 2.2 1 1 0 2 2 2 0 PHF5-like protein C1_1 PF00130.22 gi|385804662|ref|YP_005841062.1| - 0.064 13.2 9.4 0.099 12.5 1.5 2.8 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-trcl PF13451.6 gi|385804662|ref|YP_005841062.1| - 0.067 13.1 8.6 1.2 9.1 0.1 3.9 4 0 0 4 4 4 0 Probable zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|385804662|ref|YP_005841062.1| - 0.11 12.4 10.6 0.27 11.2 0.1 3.9 4 0 0 4 4 4 0 PhnA Zinc-Ribbon zf-RING_7 PF02591.15 gi|385804662|ref|YP_005841062.1| - 0.14 12.4 8.1 8.4 6.7 0.1 4.0 4 0 0 4 4 4 0 C4-type zinc ribbon domain zf-ACC PF17848.1 gi|385804662|ref|YP_005841062.1| - 0.16 12.1 14.8 4 7.6 3.0 4.0 3 1 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain eRF1_3 PF03465.15 gi|385804662|ref|YP_005841062.1| - 0.18 12.3 0.5 1 9.8 0.2 1.9 2 0 0 2 2 2 0 eRF1 domain 3 zinc_ribbon_2 PF13240.6 gi|385804662|ref|YP_005841062.1| - 0.24 11.2 16.5 1.3 8.8 2.9 4.2 3 1 0 3 3 3 0 zinc-ribbon domain IBR PF01485.21 gi|385804662|ref|YP_005841062.1| - 0.48 10.7 10.6 1.1 9.6 1.7 2.9 2 1 0 2 2 2 0 IBR domain, a half RING-finger domain YhfH PF14149.6 gi|385804662|ref|YP_005841062.1| - 0.51 10.3 15.1 4.8 7.3 0.0 4.3 4 0 0 4 4 4 0 YhfH-like protein Rubredoxin_2 PF18073.1 gi|385804662|ref|YP_005841062.1| - 0.55 10.0 17.8 1.5 8.6 0.7 4.3 4 1 0 4 4 4 0 Rubredoxin metal binding domain zf_UBZ PF18439.1 gi|385804662|ref|YP_005841062.1| - 0.58 9.8 12.8 1.7 8.3 0.1 4.0 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger zinc-ribbons_6 PF07191.12 gi|385804662|ref|YP_005841062.1| - 0.59 10.2 8.9 0.49 10.4 0.9 2.6 1 1 0 2 2 2 0 zinc-ribbons zinc_ribbon_4 PF13717.6 gi|385804662|ref|YP_005841062.1| - 1.2 9.1 11.7 2 8.4 0.4 3.7 3 1 1 4 4 4 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|385804662|ref|YP_005841062.1| - 1.6 9.1 12.4 42 4.6 6.9 3.3 1 1 1 2 2 2 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|385804662|ref|YP_005841062.1| - 1.6 8.9 15.9 43 4.3 0.1 4.1 2 2 0 3 3 3 0 Zinc ribbon domain PHD PF00628.29 gi|385804662|ref|YP_005841062.1| - 1.8 8.5 10.2 1.8 8.5 1.1 2.6 2 1 0 2 2 2 0 PHD-finger Ribosomal_L44 PF00935.19 gi|385804662|ref|YP_005841062.1| - 2.8 8.5 5.0 13 6.3 0.1 3.2 3 1 1 4 4 4 0 Ribosomal protein L44 ADK_lid PF05191.14 gi|385804662|ref|YP_005841062.1| - 4.2 7.4 16.5 11 6.1 1.6 4.2 3 1 1 4 4 4 0 Adenylate kinase, active site lid DNA_RNApol_7kD PF03604.13 gi|385804662|ref|YP_005841062.1| - 5.9 6.7 11.6 6 6.6 0.1 3.7 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-Di19 PF05605.12 gi|385804666|ref|YP_005841066.1| - 0.054 13.8 0.8 0.09 13.1 0.8 1.3 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding CpXC PF14353.6 gi|385804666|ref|YP_005841066.1| - 0.059 13.4 0.3 0.13 12.3 0.2 1.6 1 1 1 2 2 2 0 CpXC protein DUF3797 PF12677.7 gi|385804666|ref|YP_005841066.1| - 0.078 12.9 4.0 4.3 7.3 0.0 3.5 2 2 1 3 3 3 0 Domain of unknown function (DUF3797) zf-ribbon_3 PF13248.6 gi|385804667|ref|YP_005841067.1| - 0.0053 16.1 1.8 1.4 8.5 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|385804667|ref|YP_005841067.1| - 0.047 14.4 0.1 0.049 14.4 0.1 1.1 1 0 0 1 1 1 0 zinc-ribbon family zf_C2HC_14 PF18574.1 gi|385804667|ref|YP_005841067.1| - 0.15 11.9 0.3 3 7.7 0.0 2.0 2 0 0 2 2 2 0 C2HC Zing finger domain FUSC PF04632.12 gi|385804669|ref|YP_005841069.1| - 0.027 13.0 0.8 0.027 13.0 0.8 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF5534 PF17686.1 gi|385804669|ref|YP_005841069.1| - 5.6 7.2 5.0 1.1 9.4 1.7 1.4 2 0 0 2 2 2 0 Family of unknown function (DUF5534) HlyU PF10115.9 gi|385804672|ref|YP_005841072.1| - 0.13 12.3 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 Transcriptional activator HlyU Phosphorylase PF00343.20 gi|385804672|ref|YP_005841072.1| - 0.14 10.4 0.0 0.22 9.7 0.0 1.3 1 0 0 1 1 1 0 Carbohydrate phosphorylase DUF3098 PF11297.8 gi|385804675|ref|YP_005841075.1| - 0.025 14.2 1.3 0.18 11.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3098) DUF2207 PF09972.9 gi|385804675|ref|YP_005841075.1| - 0.1 11.3 0.4 0.1 11.3 0.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) RseC_MucC PF04246.12 gi|385804675|ref|YP_005841075.1| - 0.42 10.6 1.5 0.49 10.4 1.5 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC Hol_Tox PF16935.5 gi|385804675|ref|YP_005841075.1| - 9.6 6.3 9.4 5.3 7.2 2.6 2.3 1 1 1 2 2 2 0 Putative Holin-like Toxin (Hol-Tox) GHMP_kinases_N PF00288.26 gi|385804678|ref|YP_005841078.1| - 9.5e-07 29.0 0.3 1.8e-06 28.1 0.3 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|385804678|ref|YP_005841078.1| - 0.0041 17.4 0.0 0.0087 16.4 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal Cupin_2 PF07883.11 gi|385804679|ref|YP_005841079.1| - 1.6e-11 43.7 0.3 2.3e-11 43.2 0.3 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|385804679|ref|YP_005841079.1| - 0.006 16.2 0.0 0.0078 15.8 0.0 1.3 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.18 gi|385804679|ref|YP_005841079.1| - 0.0071 16.3 0.0 0.0084 16.0 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase PCO_ADO PF07847.12 gi|385804679|ref|YP_005841079.1| - 0.0074 15.8 0.0 0.0089 15.5 0.0 1.2 1 0 0 1 1 1 1 PCO_ADO DMSP_lyase PF16867.5 gi|385804679|ref|YP_005841079.1| - 0.01 15.5 0.0 0.012 15.3 0.0 1.1 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase Cupin_3 PF05899.12 gi|385804679|ref|YP_005841079.1| - 0.058 13.1 0.1 0.074 12.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) TrkA_N PF02254.18 gi|385804680|ref|YP_005841080.1| - 0.00024 21.3 0.2 0.00029 21.1 0.2 1.2 1 0 0 1 1 1 1 TrkA-N domain GMP_synt_C PF00958.22 gi|385804681|ref|YP_005841081.1| - 2.7e-30 104.3 0.1 1.2e-29 102.2 0.0 2.0 2 0 0 2 2 2 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|385804681|ref|YP_005841081.1| - 1.3e-08 34.2 0.0 6e-08 32.1 0.0 1.9 1 1 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|385804681|ref|YP_005841081.1| - 2.7e-05 23.2 0.0 0.0011 17.9 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase PAPS_reduct PF01507.19 gi|385804681|ref|YP_005841081.1| - 0.0068 16.5 0.0 0.011 15.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|385804681|ref|YP_005841081.1| - 0.013 15.0 0.1 0.058 12.9 0.1 1.8 1 1 0 2 2 2 0 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|385804681|ref|YP_005841081.1| - 0.079 12.5 0.0 0.16 11.5 0.0 1.6 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) CTP_synth_N PF06418.14 gi|385804682|ref|YP_005841082.1| - 5.9e-124 412.6 0.1 7.8e-124 412.2 0.1 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|385804682|ref|YP_005841082.1| - 3.9e-50 170.3 0.0 6.3e-50 169.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|385804682|ref|YP_005841082.1| - 2e-07 31.0 0.0 6.1e-07 29.4 0.0 1.8 2 0 0 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|385804682|ref|YP_005841082.1| - 0.0013 18.8 0.0 0.0019 18.2 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain YitT_membrane PF02588.15 gi|385804682|ref|YP_005841082.1| - 0.25 10.7 0.3 0.76 9.1 0.3 1.7 2 0 0 2 2 2 0 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DUF2892 PF11127.8 gi|385804683|ref|YP_005841083.1| - 2.9e-10 40.0 1.4 3.6e-10 39.7 1.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) PEPcase PF00311.17 gi|385804684|ref|YP_005841084.1| - 1e-242 807.7 0.0 1.5e-242 807.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase AlkA_N PF06029.11 gi|385804684|ref|YP_005841084.1| - 0.00016 21.9 1.2 0.14 12.4 0.3 2.8 2 0 0 2 2 2 2 AlkA N-terminal domain PEPcase_2 PF14010.6 gi|385804684|ref|YP_005841084.1| - 0.0042 15.6 0.0 0.0087 14.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase EGL-1 PF11430.8 gi|385804684|ref|YP_005841084.1| - 0.092 12.6 0.2 0.17 11.8 0.2 1.4 1 0 0 1 1 1 0 Programmed cell death activator EGL-1 HGD-D PF06050.13 gi|385804684|ref|YP_005841084.1| - 1.3 8.7 3.2 24 4.6 0.4 2.7 2 1 1 3 3 3 0 2-hydroxyglutaryl-CoA dehydratase, D-component Rieske PF00355.26 gi|385804685|ref|YP_005841085.1| - 0.00015 21.6 0.1 0.00027 20.8 0.1 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain ThiS PF02597.20 gi|385804686|ref|YP_005841086.1| - 9.6e-16 58.2 0.0 1.4e-15 57.6 0.0 1.3 1 0 0 1 1 1 1 ThiS family STN PF07660.14 gi|385804686|ref|YP_005841086.1| - 0.078 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Secretin and TonB N terminus short domain PNP_UDP_1 PF01048.20 gi|385804688|ref|YP_005841088.1| - 6.6e-45 153.2 6.2 7.4e-45 153.0 6.2 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF3568 PF12092.8 gi|385804688|ref|YP_005841088.1| - 0.15 12.1 1.5 0.46 10.6 0.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3568) GFO_IDH_MocA PF01408.22 gi|385804689|ref|YP_005841089.1| - 3.5e-12 47.2 0.2 9.7e-12 45.8 0.2 1.8 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|385804689|ref|YP_005841089.1| - 3.9e-06 26.9 0.0 6.6e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Sulfatase PF00884.23 gi|385804690|ref|YP_005841090.1| - 3.5e-36 125.2 0.3 4.9e-36 124.7 0.3 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|385804690|ref|YP_005841090.1| - 4e-11 43.1 0.4 0.00016 21.4 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|385804690|ref|YP_005841090.1| - 1.3e-05 24.1 0.0 3e-05 22.8 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF229) DUF1501 PF07394.12 gi|385804690|ref|YP_005841090.1| - 0.031 13.3 0.0 0.052 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1501) HTH_1 PF00126.27 gi|385804690|ref|YP_005841090.1| - 0.089 12.8 1.1 0.16 11.9 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF63 PF01889.17 gi|385804691|ref|YP_005841091.1| - 2.1e-17 64.2 13.4 2.9e-17 63.8 13.4 1.1 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 Lig_chan PF00060.26 gi|385804691|ref|YP_005841091.1| - 10 6.0 10.4 9.8 6.0 0.5 3.3 3 0 0 3 3 3 0 Ligand-gated ion channel DeoC PF01791.9 gi|385804692|ref|YP_005841092.1| - 9.3e-10 38.5 2.6 1.5e-09 37.9 2.6 1.3 1 1 0 1 1 1 1 DeoC/LacD family aldolase His_biosynth PF00977.21 gi|385804692|ref|YP_005841092.1| - 0.0043 16.5 0.3 0.017 14.6 0.0 2.0 2 0 0 2 2 2 1 Histidine biosynthesis protein RuBisCO_large PF00016.20 gi|385804692|ref|YP_005841092.1| - 0.037 13.2 0.5 0.19 10.9 0.1 2.1 2 1 0 2 2 2 0 Ribulose bisphosphate carboxylase large chain, catalytic domain Cation_efflux PF01545.21 gi|385804693|ref|YP_005841093.1| - 1.2e-41 142.6 7.6 1.5e-41 142.3 7.6 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|385804693|ref|YP_005841093.1| - 7.5e-16 58.0 2.3 1.3e-15 57.3 2.3 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter HIT PF01230.23 gi|385804694|ref|YP_005841094.1| - 5.2e-10 39.9 0.0 1.2e-09 38.8 0.0 1.6 2 0 0 2 2 2 1 HIT domain CwfJ_C_1 PF04677.15 gi|385804694|ref|YP_005841094.1| - 0.0011 18.9 0.0 0.0017 18.2 0.0 1.4 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.8 gi|385804694|ref|YP_005841094.1| - 0.0014 19.1 0.0 0.0036 17.8 0.0 1.7 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding Peptidase_M24 PF00557.24 gi|385804695|ref|YP_005841095.1| - 2.1e-43 148.5 0.3 2.9e-43 148.0 0.3 1.2 1 1 0 1 1 1 1 Metallopeptidase family M24 Metallophos PF00149.28 gi|385804696|ref|YP_005841096.1| - 4.6e-14 53.4 0.4 6e-14 53.0 0.4 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|385804696|ref|YP_005841096.1| - 1.5e-08 35.0 0.0 3.2e-08 33.9 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|385804696|ref|YP_005841096.1| - 0.0014 18.0 0.0 0.0021 17.4 0.0 1.2 1 0 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily DUF4199 PF13858.6 gi|385804697|ref|YP_005841097.1| - 0.011 16.2 2.4 0.024 15.1 2.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) PepSY_TM PF03929.16 gi|385804697|ref|YP_005841097.1| - 0.25 11.0 2.1 0.33 10.6 0.0 1.8 2 0 0 2 2 2 0 PepSY-associated TM region CD20 PF04103.15 gi|385804697|ref|YP_005841097.1| - 0.31 11.1 6.7 0.88 9.7 6.7 1.9 1 1 0 1 1 1 0 CD20-like family DUF5422 PF17459.2 gi|385804697|ref|YP_005841097.1| - 3.4 7.8 7.1 9.7 6.4 7.1 1.7 1 1 0 1 1 1 0 Family of unknown function (DUF5422) DSBA PF01323.20 gi|385804698|ref|YP_005841098.1| - 2.2e-25 89.6 0.1 3.1e-25 89.1 0.1 1.3 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 gi|385804698|ref|YP_005841098.1| - 3.5e-05 24.0 1.2 0.0011 19.2 1.2 2.1 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|385804698|ref|YP_005841098.1| - 0.0017 18.8 3.9 0.016 15.6 3.9 2.3 1 1 0 1 1 1 1 Thioredoxin-like domain Imm49 PF15575.6 gi|385804698|ref|YP_005841098.1| - 0.0056 16.5 2.2 0.009 15.8 2.2 1.3 1 0 0 1 1 1 1 Immunity protein 49 Thioredoxin_5 PF13743.6 gi|385804698|ref|YP_005841098.1| - 0.0056 16.4 0.7 0.076 12.7 0.7 2.3 1 1 0 1 1 1 1 Thioredoxin Iso_dh PF00180.20 gi|385804699|ref|YP_005841099.1| - 2.8e-107 358.9 0.0 8.7e-107 357.3 0.0 1.6 1 1 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DUF2314 PF10077.9 gi|385804699|ref|YP_005841099.1| - 0.13 12.3 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2314) Lar_N PF09861.9 gi|385804700|ref|YP_005841100.1| - 1.8e-08 33.8 0.5 3.6e-08 32.8 0.5 1.4 1 0 0 1 1 1 1 Lactate racemase N-terminal domain DUF362 PF04015.12 gi|385804700|ref|YP_005841100.1| - 0.0016 18.7 0.0 0.0029 17.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF362) zf-3CxxC_2 PF17180.4 gi|385804701|ref|YP_005841101.1| - 0.0014 19.4 0.1 0.0022 18.7 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding domain DUF5063 PF16702.5 gi|385804701|ref|YP_005841101.1| - 0.05 14.0 0.0 0.081 13.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5063) zf-Di19 PF05605.12 gi|385804701|ref|YP_005841101.1| - 0.06 13.6 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding DUF2072 PF09845.9 gi|385804701|ref|YP_005841101.1| - 0.067 13.4 0.2 0.11 12.8 0.2 1.4 1 1 0 1 1 1 0 Zn-ribbon containing protein OrfB_Zn_ribbon PF07282.11 gi|385804701|ref|YP_005841101.1| - 0.075 13.0 0.1 0.25 11.3 0.1 1.9 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Jiv90 PF14901.6 gi|385804701|ref|YP_005841101.1| - 0.077 13.2 0.9 0.11 12.7 0.9 1.4 1 0 0 1 1 1 0 Cleavage inducing molecular chaperone Zn-ribbon_8 PF09723.10 gi|385804701|ref|YP_005841101.1| - 0.091 12.9 0.3 0.17 12.0 0.3 1.5 1 0 0 1 1 1 0 Zinc ribbon domain HypA PF01155.19 gi|385804701|ref|YP_005841101.1| - 0.17 11.9 0.5 0.29 11.2 0.5 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FYDLN_acid PF09538.10 gi|385804701|ref|YP_005841101.1| - 1.1 10.0 5.2 2.2 9.0 5.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) HMG-CoA_red PF00368.18 gi|385804702|ref|YP_005841102.1| - 6.2e-126 420.3 10.2 7.1e-126 420.1 10.2 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DUF1522 PF07482.11 gi|385804702|ref|YP_005841102.1| - 3 8.2 11.3 0.66 10.3 1.3 3.3 3 1 0 3 3 3 0 Domain of Unknown Function (DUF1522) NadA PF02445.16 gi|385804703|ref|YP_005841103.1| - 4e-102 341.4 0.0 4.6e-102 341.2 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein FAD_binding_2 PF00890.24 gi|385804704|ref|YP_005841104.1| - 1.7e-75 254.7 4.9 2.2e-75 254.3 4.9 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|385804704|ref|YP_005841104.1| - 1.2e-10 41.1 2.9 1.9e-06 27.4 1.2 2.9 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|385804704|ref|YP_005841104.1| - 1.3e-10 41.4 1.3 2.2e-10 40.7 1.3 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|385804704|ref|YP_005841104.1| - 5.2e-08 32.4 0.9 2.7e-06 26.7 0.8 2.3 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|385804704|ref|YP_005841104.1| - 1.1e-07 31.6 3.0 8.3e-07 28.7 2.3 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|385804704|ref|YP_005841104.1| - 1.6e-06 27.1 0.2 0.0017 17.1 0.2 2.3 2 0 0 2 2 2 2 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|385804704|ref|YP_005841104.1| - 8.5e-06 25.2 0.3 2e-05 24.0 0.3 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 gi|385804704|ref|YP_005841104.1| - 6e-05 23.2 0.6 0.0002 21.5 0.6 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|385804704|ref|YP_005841104.1| - 0.00039 19.8 0.3 0.00068 19.0 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|385804704|ref|YP_005841104.1| - 0.00089 19.2 0.1 0.0019 18.2 0.1 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox PF00070.27 gi|385804704|ref|YP_005841104.1| - 0.0012 19.3 0.1 0.005 17.4 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|385804704|ref|YP_005841104.1| - 0.0024 17.2 0.1 0.0037 16.5 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|385804704|ref|YP_005841104.1| - 0.0047 17.3 0.1 0.0097 16.3 0.1 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding Lycopene_cycl PF05834.12 gi|385804704|ref|YP_005841104.1| - 0.04 13.0 0.7 0.058 12.4 0.7 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein Thi4 PF01946.17 gi|385804704|ref|YP_005841104.1| - 1.8 7.7 3.9 2.2 7.5 0.9 2.4 2 1 0 3 3 3 0 Thi4 family QRPTase_C PF01729.19 gi|385804705|ref|YP_005841105.1| - 3.6e-52 176.6 1.2 4.8e-52 176.1 1.2 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|385804705|ref|YP_005841105.1| - 2.5e-18 65.9 0.1 8.6e-18 64.2 0.0 1.9 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.19 gi|385804705|ref|YP_005841105.1| - 0.089 12.2 0.8 0.22 10.9 0.3 1.8 1 1 0 2 2 2 0 Ribulose-phosphate 3 epimerase family OMPdecase PF00215.24 gi|385804706|ref|YP_005841106.1| - 1.8e-31 109.5 0.0 2.3e-31 109.1 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF2180 PF09947.9 gi|385804707|ref|YP_005841107.1| - 0.031 14.2 2.0 0.031 14.2 2.0 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2180) DZR PF12773.7 gi|385804707|ref|YP_005841107.1| - 0.1 12.7 4.5 0.14 12.2 4.5 1.2 1 0 0 1 1 1 0 Double zinc ribbon DUF1889 PF08986.10 gi|385804707|ref|YP_005841107.1| - 0.14 12.6 0.0 0.14 12.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1889) Rubredoxin_2 PF18073.1 gi|385804707|ref|YP_005841107.1| - 0.44 10.3 4.7 31 4.4 4.6 2.3 1 1 0 1 1 1 0 Rubredoxin metal binding domain Tnp_zf-ribbon_2 PF13842.6 gi|385804707|ref|YP_005841107.1| - 0.55 11.1 5.3 1.3 9.9 5.4 1.7 1 1 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon Zn_ribbon_SprT PF17283.2 gi|385804707|ref|YP_005841107.1| - 0.59 10.1 5.2 4 7.4 1.4 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-ACC PF17848.1 gi|385804707|ref|YP_005841107.1| - 1 9.5 4.7 1.4 9.0 4.7 1.3 1 0 0 1 1 1 0 Acetyl-coA carboxylase zinc finger domain Glutaredoxin PF00462.24 gi|385804708|ref|YP_005841108.1| - 8.8e-14 51.5 0.0 1.1e-13 51.1 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.6 gi|385804708|ref|YP_005841108.1| - 3.8e-11 43.2 0.0 4e-11 43.2 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 gi|385804708|ref|YP_005841108.1| - 8e-09 35.7 0.0 9e-09 35.5 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|385804708|ref|YP_005841108.1| - 0.00069 19.9 0.0 0.00093 19.5 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|385804708|ref|YP_005841108.1| - 0.0056 17.1 0.0 0.0075 16.7 0.0 1.4 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_2 PF13098.6 gi|385804708|ref|YP_005841108.1| - 0.11 12.9 0.0 0.13 12.8 0.0 1.3 1 1 0 1 1 1 0 Thioredoxin-like domain PLDc_2 PF13091.6 gi|385804709|ref|YP_005841109.1| - 1.3e-05 25.1 0.0 2.7e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 PLD-like domain RE_NgoFVII PF09565.10 gi|385804709|ref|YP_005841109.1| - 0.00031 20.1 0.0 0.00056 19.3 0.0 1.3 1 0 0 1 1 1 1 NgoFVII restriction endonuclease Tyr-DNA_phospho PF06087.12 gi|385804709|ref|YP_005841109.1| - 0.039 12.9 0.0 0.056 12.3 0.0 1.2 1 0 0 1 1 1 0 Tyrosyl-DNA phosphodiesterase CobT PF06213.12 gi|385804709|ref|YP_005841109.1| - 0.44 9.9 9.2 1.2 8.4 8.3 2.2 3 0 0 3 3 3 0 Cobalamin biosynthesis protein CobT YdjM PF04307.14 gi|385804710|ref|YP_005841110.1| - 2.8e-08 33.3 4.7 3.6e-08 32.9 4.7 1.1 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Arylsulfotrans PF05935.11 gi|385804711|ref|YP_005841111.1| - 5.5e-12 45.3 4.4 3.7e-11 42.6 2.8 2.1 1 1 0 2 2 2 1 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.6 gi|385804711|ref|YP_005841111.1| - 7.5e-07 28.8 0.3 0.00011 21.7 0.4 3.2 3 1 0 3 3 3 1 Arylsulfotransferase (ASST) NHL PF01436.21 gi|385804711|ref|YP_005841111.1| - 3 8.1 9.4 15 5.9 0.1 4.6 6 0 0 6 6 6 0 NHL repeat Big_7 PF17957.1 gi|385804711|ref|YP_005841111.1| - 9.4 7.1 11.4 0.92 10.3 0.2 3.7 4 0 0 4 4 4 0 Bacterial Ig domain Xan_ur_permease PF00860.20 gi|385804712|ref|YP_005841112.1| - 2e-30 105.8 43.3 2.9e-30 105.2 43.3 1.3 1 0 0 1 1 1 1 Permease family TNFR_16_TM PF18422.1 gi|385804712|ref|YP_005841112.1| - 7.5 6.6 11.2 1.3 9.0 2.9 3.1 2 0 0 2 2 2 0 Tumor necrosis factor receptor member 16 trans-membrane domain Pribosyltran PF00156.27 gi|385804713|ref|YP_005841113.1| - 4e-09 36.2 0.9 1.2e-08 34.6 0.9 1.7 1 1 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.22 gi|385804713|ref|YP_005841113.1| - 0.052 13.6 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix Pribosyltran PF00156.27 gi|385804714|ref|YP_005841114.1| - 1.5e-13 50.6 0.9 2.2e-13 50.0 0.9 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|385804714|ref|YP_005841114.1| - 7.3e-06 25.6 0.3 1.1e-05 25.0 0.3 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|385804714|ref|YP_005841114.1| - 0.023 14.2 0.5 0.038 13.5 0.5 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase CarS-like PF01864.17 gi|385804715|ref|YP_005841115.1| - 1.5e-44 152.0 3.0 1.9e-44 151.7 3.0 1.1 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|385804715|ref|YP_005841115.1| - 0.00013 21.8 1.7 0.00013 21.8 1.7 2.0 2 0 0 2 2 2 1 Cytidylyltransferase family CcmD PF04995.14 gi|385804715|ref|YP_005841115.1| - 0.39 10.8 1.9 1.1 9.4 0.1 2.6 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) DUF502 PF04367.13 gi|385804716|ref|YP_005841116.1| - 9.1e-20 70.5 0.3 9.1e-20 70.5 0.3 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF502) Colicin_V PF02674.16 gi|385804716|ref|YP_005841116.1| - 0.0014 18.6 3.1 0.0021 18.0 3.1 1.2 1 0 0 1 1 1 1 Colicin V production protein DUF1772 PF08592.11 gi|385804716|ref|YP_005841116.1| - 0.022 15.0 0.5 0.027 14.8 0.5 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) Membralin PF09746.9 gi|385804716|ref|YP_005841116.1| - 0.065 12.3 0.0 0.065 12.3 0.0 1.1 1 0 0 1 1 1 0 Tumour-associated protein Aminotran_4 PF01063.19 gi|385804717|ref|YP_005841117.1| - 1e-52 179.2 0.0 1.2e-52 179.0 0.0 1.1 1 0 0 1 1 1 1 Amino-transferase class IV RNA_pol_Rpb5_N PF03871.14 gi|385804717|ref|YP_005841117.1| - 0.16 12.6 0.0 0.29 11.7 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase Rpb5, N-terminal domain DHBP_synthase PF00926.19 gi|385804718|ref|YP_005841118.1| - 1.4e-51 174.8 1.0 1.6e-51 174.6 1.0 1.1 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CTP-dep_RFKase PF01982.16 gi|385804719|ref|YP_005841119.1| - 2.4e-46 156.7 0.0 3.7e-46 156.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_24 PF13412.6 gi|385804719|ref|YP_005841119.1| - 9.4e-07 28.3 0.1 1.8e-06 27.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|385804719|ref|YP_005841119.1| - 6.5e-06 26.1 0.1 1.9e-05 24.6 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|385804719|ref|YP_005841119.1| - 6.6e-06 25.9 0.1 1.3e-05 25.0 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|385804719|ref|YP_005841119.1| - 7.7e-06 26.0 0.0 0.00047 20.3 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.22 gi|385804719|ref|YP_005841119.1| - 0.00026 20.9 0.0 0.00052 19.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|385804719|ref|YP_005841119.1| - 0.0003 20.7 0.0 0.00056 19.8 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.6 gi|385804719|ref|YP_005841119.1| - 0.00064 20.2 0.0 0.0011 19.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_AsnC-type PF13404.6 gi|385804719|ref|YP_005841119.1| - 0.00094 19.0 0.3 0.0019 18.0 0.3 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|385804719|ref|YP_005841119.1| - 0.001 19.0 0.1 0.0026 17.7 0.0 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|385804719|ref|YP_005841119.1| - 0.0014 18.8 0.0 0.0027 17.9 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|385804719|ref|YP_005841119.1| - 0.0052 16.5 0.1 0.0097 15.7 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.12 gi|385804719|ref|YP_005841119.1| - 0.025 14.3 0.0 0.046 13.5 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_1 PF00126.27 gi|385804719|ref|YP_005841119.1| - 0.078 12.9 0.0 0.27 11.2 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family tRNA-synt_1d PF00750.19 gi|385804721|ref|YP_005841121.1| - 1.1e-38 133.1 0.0 1.5e-38 132.6 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|385804721|ref|YP_005841121.1| - 1.5e-30 105.8 0.2 1.4e-29 102.7 0.0 2.3 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|385804721|ref|YP_005841121.1| - 2.7e-09 37.5 0.0 8.1e-09 35.9 0.0 1.9 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|385804721|ref|YP_005841121.1| - 0.0084 15.1 0.0 0.19 10.6 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) FixP_N PF14715.6 gi|529167410|ref|YP_008378658.1| - 0.23 11.2 3.1 0.29 10.9 3.1 1.4 1 1 0 1 1 1 0 N-terminal domain of cytochrome oxidase-cbb3, FixP eRF1_2 PF03464.15 gi|385804722|ref|YP_005841122.1| - 4.5e-42 143.5 0.0 8.9e-42 142.6 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|385804722|ref|YP_005841122.1| - 1.8e-27 96.1 0.1 4.9e-27 94.7 0.1 1.8 1 0 0 1 1 1 1 eRF1 domain 3 acVLRF1 PF18859.1 gi|385804722|ref|YP_005841122.1| - 3.6e-18 66.1 0.1 8.4e-18 64.9 0.1 1.6 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|385804722|ref|YP_005841122.1| - 3.8e-14 53.1 0.0 1.3e-13 51.4 0.0 1.9 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|385804722|ref|YP_005841122.1| - 1.1e-11 44.8 0.0 1.6e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 Zn-ribbon_8 PF09723.10 gi|385804722|ref|YP_005841122.1| - 0.0002 21.4 3.0 0.00023 21.2 1.5 1.9 2 0 0 2 2 2 1 Zinc ribbon domain baeRF_family12 PF18856.1 gi|385804722|ref|YP_005841122.1| - 0.016 15.8 0.0 0.039 14.5 0.0 1.7 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 12 TF_Zn_Ribbon PF08271.12 gi|385804722|ref|YP_005841122.1| - 0.23 11.0 1.0 0.67 9.5 1.0 1.8 1 0 0 1 1 1 0 TFIIB zinc-binding ATP-synt_D PF01813.17 gi|385804723|ref|YP_005841123.1| - 1.8e-54 184.5 10.2 2.2e-54 184.3 10.2 1.1 1 0 0 1 1 1 1 ATP synthase subunit D ATP-synt_ab PF00006.25 gi|385804724|ref|YP_005841124.1| - 1.5e-63 214.3 0.0 2e-63 213.9 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|385804724|ref|YP_005841124.1| - 1.5e-13 51.1 0.5 3.4e-13 49.9 0.5 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|385804724|ref|YP_005841124.1| - 0.0069 16.5 0.8 0.028 14.6 0.8 2.1 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_ab PF00006.25 gi|385804725|ref|YP_005841125.1| - 6.5e-92 307.0 0.0 1e-91 306.4 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|385804725|ref|YP_005841125.1| - 1.5e-36 124.9 0.1 2.8e-36 124.1 0.1 1.5 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|385804725|ref|YP_005841125.1| - 4.5e-12 46.3 3.3 4.5e-12 46.3 3.3 2.1 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain RnfC_N PF13375.6 gi|385804725|ref|YP_005841125.1| - 0.068 13.1 0.2 14 5.8 0.1 2.6 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain ATP-synt_F PF01990.17 gi|385804726|ref|YP_005841126.1| - 8.2e-15 54.9 0.0 9.4e-15 54.7 0.0 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit AMP-binding_C PF13193.6 gi|385804726|ref|YP_005841126.1| - 0.024 15.6 0.1 0.8 10.7 0.0 2.2 1 1 1 2 2 2 0 AMP-binding enzyme C-terminal domain vATP-synt_AC39 PF01992.16 gi|385804727|ref|YP_005841127.1| - 1.5e-77 261.4 8.8 1.6e-77 261.3 8.8 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit vATP-synt_E PF01991.18 gi|385804728|ref|YP_005841128.1| - 1.1e-41 142.5 14.0 1.6e-41 141.9 14.0 1.3 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ATP-synt_B PF00430.18 gi|385804728|ref|YP_005841128.1| - 0.0021 18.1 22.6 0.0027 17.8 21.0 1.9 1 1 1 2 2 2 1 ATP synthase B/B' CF(0) HrpE PF06188.12 gi|385804728|ref|YP_005841128.1| - 0.025 14.5 8.3 0.038 13.9 8.3 1.3 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E ApoO PF09769.9 gi|385804728|ref|YP_005841128.1| - 0.12 12.3 1.6 0.28 11.2 0.8 1.8 1 1 1 2 2 2 0 Apolipoprotein O DUF3552 PF12072.8 gi|385804728|ref|YP_005841128.1| - 0.17 11.3 23.7 0.47 9.8 23.5 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) V-ATPase_G_2 PF16999.5 gi|385804728|ref|YP_005841128.1| - 0.21 12.0 24.0 0.081 13.4 20.8 2.0 2 2 0 2 2 2 0 Vacuolar (H+)-ATPase G subunit RPN6_N PF18055.1 gi|385804728|ref|YP_005841128.1| - 0.26 11.6 5.8 0.51 10.7 5.0 1.8 1 1 1 2 2 2 0 26S proteasome regulatory subunit RPN6 N-terminal domain DivIVA PF05103.13 gi|385804728|ref|YP_005841128.1| - 0.35 11.0 17.3 4.4 7.4 16.6 2.4 1 1 1 2 2 2 0 DivIVA protein LMBR1 PF04791.16 gi|385804728|ref|YP_005841128.1| - 0.49 9.2 2.9 0.56 9.1 2.9 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein PPL5 PF18168.1 gi|385804728|ref|YP_005841128.1| - 0.52 9.5 6.3 0.67 9.2 6.3 1.1 1 0 0 1 1 1 0 Prim-pol family 5 Peptidase_M41 PF01434.18 gi|385804728|ref|YP_005841128.1| - 0.67 9.8 6.0 0.58 10.0 3.3 2.0 1 1 1 2 2 2 0 Peptidase family M41 Aldedh PF00171.22 gi|385804728|ref|YP_005841128.1| - 1.7 7.1 4.6 1.9 6.9 4.6 1.2 1 0 0 1 1 1 0 Aldehyde dehydrogenase family Fmp27_WPPW PF10359.9 gi|385804728|ref|YP_005841128.1| - 2 7.2 8.8 3.5 6.4 8.9 1.4 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain V_ATPase_I PF01496.19 gi|385804728|ref|YP_005841128.1| - 3 5.7 4.7 3.2 5.5 4.7 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF3801 PF12687.7 gi|385804728|ref|YP_005841128.1| - 3.5 7.7 9.7 19 5.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3801) Atg14 PF10186.9 gi|385804728|ref|YP_005841128.1| - 4.8 6.2 7.1 6.1 5.8 7.1 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 RRN3 PF05327.11 gi|385804728|ref|YP_005841128.1| - 6 5.3 9.6 6 5.3 9.6 1.2 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 ATP-synt_C PF00137.21 gi|385804729|ref|YP_005841129.1| - 3.1e-11 43.4 12.0 3.8e-11 43.2 12.0 1.1 1 0 0 1 1 1 1 ATP synthase subunit C V_ATPase_I PF01496.19 gi|385804730|ref|YP_005841130.1| - 2.7e-16 58.7 23.3 3e-08 32.1 3.4 4.8 5 1 0 5 5 5 3 V-type ATPase 116kDa subunit family BBS2_C PF14782.6 gi|385804730|ref|YP_005841130.1| - 0.00036 19.4 0.1 0.024 13.4 0.1 2.1 2 0 0 2 2 2 1 Ciliary BBSome complex subunit 2, C-terminal ATP-synt_D PF01813.17 gi|385804730|ref|YP_005841130.1| - 0.00093 19.1 2.4 0.3 10.9 0.8 2.3 2 0 0 2 2 2 2 ATP synthase subunit D DUF4140 PF13600.6 gi|385804730|ref|YP_005841130.1| - 0.013 15.9 6.0 0.49 10.9 1.2 2.4 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF3450 PF11932.8 gi|385804730|ref|YP_005841130.1| - 0.013 14.8 2.8 0.33 10.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) RasGAP_C PF03836.15 gi|385804730|ref|YP_005841130.1| - 0.014 15.5 2.7 0.4 10.8 0.5 2.2 2 0 0 2 2 2 0 RasGAP C-terminus Herpes_UL25 PF01499.16 gi|385804730|ref|YP_005841130.1| - 0.061 11.8 1.7 0.47 8.9 0.1 2.1 2 0 0 2 2 2 0 Herpesvirus UL25 family Prefoldin_2 PF01920.20 gi|385804730|ref|YP_005841130.1| - 0.099 12.6 8.0 2.2 8.3 0.9 2.8 3 0 0 3 3 3 0 Prefoldin subunit DUF1845 PF08900.11 gi|385804730|ref|YP_005841130.1| - 0.1 12.3 1.0 1.4 8.6 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1845) E2F_CC-MB PF16421.5 gi|385804730|ref|YP_005841130.1| - 0.12 12.8 3.0 0.71 10.3 0.1 2.3 2 0 0 2 2 2 0 E2F transcription factor CC-MB domain STAT_alpha PF01017.20 gi|385804730|ref|YP_005841130.1| - 0.22 11.4 1.5 0.27 11.1 0.1 1.7 2 0 0 2 2 2 0 STAT protein, all-alpha domain CENP-F_leu_zip PF10473.9 gi|385804730|ref|YP_005841130.1| - 0.24 11.4 8.5 0.54 10.3 0.6 2.3 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Cep57_MT_bd PF06657.13 gi|385804730|ref|YP_005841130.1| - 0.27 11.7 6.8 3.3 8.2 0.4 2.7 3 0 0 3 3 2 0 Centrosome microtubule-binding domain of Cep57 KfrA_N PF11740.8 gi|385804730|ref|YP_005841130.1| - 0.28 11.8 5.9 4.5 8.0 0.4 2.7 3 0 0 3 3 2 0 Plasmid replication region DNA-binding N-term Spc7 PF08317.11 gi|385804730|ref|YP_005841130.1| - 0.36 9.7 5.9 1.4 7.7 0.2 2.1 2 0 0 2 2 2 0 Spc7 kinetochore protein DUF5320 PF17253.2 gi|385804730|ref|YP_005841130.1| - 0.42 11.7 5.2 1.5 9.9 1.3 2.6 2 0 0 2 2 2 0 Family of unknown function (DUF5320) Syntaxin-6_N PF09177.11 gi|385804730|ref|YP_005841130.1| - 0.53 10.9 4.3 8.8 7.0 0.3 2.5 2 0 0 2 2 2 0 Syntaxin 6, N-terminal APG6_N PF17675.1 gi|385804730|ref|YP_005841130.1| - 0.54 10.8 12.4 2.8 8.5 1.2 2.2 2 0 0 2 2 2 0 Apg6 coiled-coil region Tektin PF03148.14 gi|385804730|ref|YP_005841130.1| - 0.64 8.7 5.9 0.21 10.3 0.4 2.0 2 0 0 2 2 2 0 Tektin family OmpH PF03938.14 gi|385804730|ref|YP_005841130.1| - 1.2 9.4 6.2 3.7 7.9 2.9 2.2 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Spc24 PF08286.11 gi|385804730|ref|YP_005841130.1| - 1.3 9.2 4.7 6.7 7.0 0.1 2.4 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 Med4 PF10018.9 gi|385804730|ref|YP_005841130.1| - 1.6 8.4 6.1 9.2 5.9 0.8 2.2 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 GrpE PF01025.19 gi|385804730|ref|YP_005841130.1| - 1.9 8.1 5.6 17 5.0 1.9 2.3 2 0 0 2 2 2 0 GrpE FlaC_arch PF05377.11 gi|385804730|ref|YP_005841130.1| - 2.8 8.4 5.5 6.4 7.3 0.1 2.5 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Nas2_N PF18265.1 gi|385804730|ref|YP_005841130.1| - 3 7.8 4.9 23 5.0 0.7 2.7 3 0 0 3 3 2 0 Nas2 N_terminal domain V-ATPase_G_2 PF16999.5 gi|385804731|ref|YP_005841131.1| - 1.6e-06 28.4 22.2 2.6e-06 27.8 22.2 1.3 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.18 gi|385804731|ref|YP_005841131.1| - 0.00014 22.0 28.4 0.027 14.5 6.6 2.4 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) DUF3552 PF12072.8 gi|385804731|ref|YP_005841131.1| - 0.00017 21.0 26.7 0.00035 20.1 19.1 2.0 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) HrpE PF06188.12 gi|385804731|ref|YP_005841131.1| - 0.03 14.2 8.3 0.04 13.8 8.3 1.3 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E DUF883 PF05957.13 gi|385804731|ref|YP_005841131.1| - 0.087 13.4 14.7 2 9.1 8.5 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DivIVA PF05103.13 gi|385804731|ref|YP_005841131.1| - 0.23 11.6 19.5 2.3 8.3 2.5 2.2 1 1 1 2 2 2 0 DivIVA protein V-ATPase_G PF03179.15 gi|385804731|ref|YP_005841131.1| - 0.26 11.9 26.8 4.9 7.8 26.8 2.4 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit Caudo_TAP PF02413.17 gi|385804731|ref|YP_005841131.1| - 0.55 10.4 13.9 2.5 8.3 7.9 2.5 1 1 1 2 2 2 0 Caudovirales tail fibre assembly protein, lambda gpK OmpH PF03938.14 gi|385804731|ref|YP_005841131.1| - 0.75 10.1 16.0 0.87 9.9 16.0 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) PET10 PF17316.2 gi|385804731|ref|YP_005841131.1| - 0.93 9.0 3.6 1.1 8.7 3.6 1.0 1 0 0 1 1 1 0 Petite colonies protein 10 DUF445 PF04286.12 gi|385804731|ref|YP_005841131.1| - 1 9.1 8.2 1.2 8.9 8.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF445) YtxH PF12732.7 gi|385804731|ref|YP_005841131.1| - 1.5 9.4 13.9 4.3 8.0 1.6 2.3 1 1 1 2 2 2 0 YtxH-like protein AAA_11 PF13086.6 gi|385804731|ref|YP_005841131.1| - 1.7 8.4 10.4 2.1 8.1 10.4 1.1 1 0 0 1 1 1 0 AAA domain dCache_2 PF08269.11 gi|385804731|ref|YP_005841131.1| - 3 7.0 8.7 0.86 8.7 5.5 1.6 1 1 0 1 1 1 0 Cache domain CENP-H PF05837.12 gi|385804731|ref|YP_005841131.1| - 5.6 7.4 12.7 7.7 7.0 12.5 1.3 1 1 0 1 1 1 0 Centromere protein H (CENP-H) Methyltransf_11 PF08241.12 gi|385804732|ref|YP_005841132.1| - 1.6e-22 79.9 0.0 2.7e-22 79.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|385804732|ref|YP_005841132.1| - 6e-20 71.8 0.0 1e-19 71.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|385804732|ref|YP_005841132.1| - 5.2e-16 58.8 0.0 6.6e-16 58.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|385804732|ref|YP_005841132.1| - 4e-14 52.5 0.0 5.6e-11 42.2 0.0 2.1 1 1 1 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|385804732|ref|YP_005841132.1| - 4.4e-13 49.4 0.0 6.4e-13 48.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|385804732|ref|YP_005841132.1| - 2.8e-12 47.2 0.0 4.2e-12 46.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|385804732|ref|YP_005841132.1| - 1.3e-05 24.5 0.0 1.7e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MetW PF07021.12 gi|385804732|ref|YP_005841132.1| - 3.5e-05 23.5 0.0 4.8e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|385804732|ref|YP_005841132.1| - 0.00017 21.0 0.0 0.00027 20.3 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|385804732|ref|YP_005841132.1| - 0.00019 21.3 0.0 0.00062 19.6 0.0 1.9 2 1 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_9 PF08003.11 gi|385804732|ref|YP_005841132.1| - 0.0039 16.2 0.0 0.0048 15.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) NodS PF05401.11 gi|385804732|ref|YP_005841132.1| - 0.0046 16.6 0.0 0.0059 16.2 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_2 PF00891.18 gi|385804732|ref|YP_005841132.1| - 0.0061 15.9 0.0 0.011 15.0 0.0 1.5 1 1 0 1 1 1 1 O-methyltransferase domain MTS PF05175.14 gi|385804732|ref|YP_005841132.1| - 0.008 15.7 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_29 PF03141.16 gi|385804732|ref|YP_005841132.1| - 0.01 14.5 0.0 0.013 14.1 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase ADPrib_exo_Tox PF03496.14 gi|385804732|ref|YP_005841132.1| - 0.032 13.6 0.0 0.12 11.7 0.0 1.7 2 0 0 2 2 2 0 ADP-ribosyltransferase exoenzyme Methyltransf_32 PF13679.6 gi|385804732|ref|YP_005841132.1| - 0.11 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF202 PF02656.15 gi|385804735|ref|YP_005841135.1| - 0.19 12.2 0.3 2 8.9 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF202) polyprenyl_synt PF00348.17 gi|385804736|ref|YP_005841136.1| - 4.4e-53 179.9 0.0 5.7e-53 179.6 0.0 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase UBA PF00627.31 gi|385804736|ref|YP_005841136.1| - 0.025 14.5 0.2 0.26 11.2 0.0 2.6 2 0 0 2 2 2 0 UBA/TS-N domain DUF373 PF04123.13 gi|385804737|ref|YP_005841137.1| - 2e-117 392.4 8.8 2.4e-117 392.2 8.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) MARVEL PF01284.23 gi|385804737|ref|YP_005841137.1| - 0.35 10.9 9.8 4.4 7.3 4.6 2.3 1 1 1 2 2 2 0 Membrane-associating domain DUF2721 PF11026.8 gi|385804737|ref|YP_005841137.1| - 0.76 9.7 5.4 0.2 11.6 0.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2721) Radical_SAM PF04055.21 gi|385804738|ref|YP_005841138.1| - 0.00017 22.0 0.0 0.0096 16.3 0.0 2.2 2 0 0 2 2 2 2 Radical SAM superfamily Fer4_14 PF13394.6 gi|385804738|ref|YP_005841138.1| - 0.0071 16.5 0.0 0.012 15.7 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF4134 PF13572.6 gi|385804739|ref|YP_005841139.1| - 0.0045 17.2 1.2 0.015 15.5 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4134) EptA_B_N PF08019.12 gi|385804739|ref|YP_005841139.1| - 0.14 12.0 2.2 1.3 8.9 0.3 2.6 2 0 0 2 2 2 0 Phosphoethanolamine transferase EptA/EptB TRAM PF01938.20 gi|385804740|ref|YP_005841140.1| - 1.2e-07 31.6 0.2 2.1e-07 30.8 0.1 1.5 2 0 0 2 2 2 1 TRAM domain TFX_C PF14601.6 gi|385804741|ref|YP_005841141.1| - 7.9e-31 105.9 0.1 1.1e-30 105.4 0.1 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|385804741|ref|YP_005841141.1| - 1.4e-05 24.5 0.5 2.4e-05 23.8 0.5 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 gi|385804741|ref|YP_005841141.1| - 0.0001 21.7 0.6 0.00021 20.8 0.2 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family RepB PF07506.11 gi|385804741|ref|YP_005841141.1| - 0.00093 19.3 0.1 0.0015 18.7 0.1 1.3 1 0 0 1 1 1 1 RepB plasmid partitioning protein Sigma70_r4_2 PF08281.12 gi|385804741|ref|YP_005841141.1| - 0.0018 17.9 0.2 0.0043 16.7 0.1 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_7 PF02796.15 gi|385804741|ref|YP_005841141.1| - 0.007 16.4 0.0 0.017 15.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|385804741|ref|YP_005841141.1| - 0.0099 15.7 0.2 0.02 14.7 0.2 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_3 PF01381.22 gi|385804741|ref|YP_005841141.1| - 0.013 15.6 0.1 0.029 14.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_37 PF13744.6 gi|385804741|ref|YP_005841141.1| - 0.08 12.9 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_31 PF13560.6 gi|385804741|ref|YP_005841141.1| - 0.25 11.7 4.4 0.1 12.9 1.8 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain NTP_transferase PF00483.23 gi|385804742|ref|YP_005841142.1| - 6.5e-38 130.7 0.0 2.4e-37 128.9 0.0 1.8 2 0 0 2 2 2 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|385804742|ref|YP_005841142.1| - 1.3e-10 41.9 0.5 2.8e-09 37.5 0.0 2.3 2 0 0 2 2 2 1 MobA-like NTP transferase domain MannoseP_isomer PF01050.18 gi|385804742|ref|YP_005841142.1| - 5.6e-05 23.1 0.2 0.0061 16.4 0.1 2.5 2 0 0 2 2 2 2 Mannose-6-phosphate isomerase NTP_transf_4 PF13562.6 gi|385804742|ref|YP_005841142.1| - 0.13 12.5 0.2 0.24 11.6 0.2 1.4 1 0 0 1 1 1 0 Sugar nucleotidyl transferase tRNA_anti-codon PF01336.25 gi|385804744|ref|YP_005841144.1| - 0.006 16.6 0.3 0.07 13.1 0.1 2.5 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain RMI1_C PF16099.5 gi|385804744|ref|YP_005841144.1| - 0.12 12.2 0.1 0.25 11.2 0.1 1.5 1 0 0 1 1 1 0 Recq-mediated genome instability protein 1, C-terminal OB-fold RHH_1 PF01402.21 gi|385804746|ref|YP_005841146.1| - 3.4e-05 23.6 0.2 3.4e-05 23.6 0.2 2.5 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family DUF3562 PF12085.8 gi|385804746|ref|YP_005841146.1| - 0.00037 20.0 0.1 0.00077 19.0 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3562) CopG_antitoxin PF12441.8 gi|385804746|ref|YP_005841146.1| - 0.00059 20.3 0.0 0.0015 19.0 0.0 1.6 1 0 0 1 1 1 1 CopG antitoxin of type II toxin-antitoxin system Spc29 PF17082.5 gi|385804746|ref|YP_005841146.1| - 0.00092 19.1 0.9 0.0029 17.5 0.1 1.8 1 1 1 2 2 2 1 Spindle Pole Component 29 Sec2p PF06428.11 gi|385804746|ref|YP_005841146.1| - 0.0044 17.0 6.2 0.0083 16.1 6.2 1.6 1 1 0 1 1 1 1 GDP/GTP exchange factor Sec2p HicB PF05534.12 gi|385804746|ref|YP_005841146.1| - 0.12 12.2 0.5 0.63 9.9 0.0 2.0 2 0 0 2 2 2 0 HicB family Glutaredoxin2_C PF04399.13 gi|385804746|ref|YP_005841146.1| - 0.13 12.1 0.8 4 7.3 0.4 2.1 2 0 0 2 2 2 0 Glutaredoxin 2, C terminal domain RHH_4 PF13467.6 gi|385804746|ref|YP_005841146.1| - 0.14 12.1 0.5 0.38 10.7 0.0 1.8 2 0 0 2 2 2 0 Ribbon-helix-helix domain ABC_tran PF00005.27 gi|385804748|ref|YP_005841148.1| - 3.1e-33 115.2 0.0 4.3e-33 114.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385804748|ref|YP_005841148.1| - 3.8e-12 46.6 0.4 1.6e-05 24.9 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385804748|ref|YP_005841148.1| - 2.3e-06 27.2 0.4 0.0047 16.4 0.1 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|385804748|ref|YP_005841148.1| - 7.9e-06 25.8 0.4 0.00036 20.4 0.1 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|385804748|ref|YP_005841148.1| - 4.1e-05 23.2 0.1 7.9e-05 22.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|385804748|ref|YP_005841148.1| - 8.2e-05 22.9 0.4 0.0017 18.6 0.2 2.5 1 1 1 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|385804748|ref|YP_005841148.1| - 0.0002 21.3 0.1 0.00043 20.2 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|385804748|ref|YP_005841148.1| - 0.00037 21.0 0.3 0.00082 19.9 0.1 1.6 2 0 0 2 2 2 1 AAA domain AAA_27 PF13514.6 gi|385804748|ref|YP_005841148.1| - 0.00049 19.8 0.0 0.00097 18.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|385804748|ref|YP_005841148.1| - 0.0074 15.9 0.6 0.013 15.1 0.1 1.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|385804748|ref|YP_005841148.1| - 0.011 15.4 0.3 0.036 13.8 0.0 1.8 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|385804748|ref|YP_005841148.1| - 0.014 15.5 0.1 0.037 14.1 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_10 PF12846.7 gi|385804748|ref|YP_005841148.1| - 0.014 14.3 0.1 0.26 10.2 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain ATPase_2 PF01637.18 gi|385804748|ref|YP_005841148.1| - 0.026 14.4 0.1 0.056 13.4 0.0 1.5 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|385804748|ref|YP_005841148.1| - 0.033 14.1 0.8 0.077 12.9 0.3 1.8 2 0 0 2 2 2 0 NACHT domain Dynamin_N PF00350.23 gi|385804748|ref|YP_005841148.1| - 0.047 13.7 0.2 0.5 10.4 0.1 2.0 2 0 0 2 2 2 0 Dynamin family AAA_33 PF13671.6 gi|385804748|ref|YP_005841148.1| - 0.061 13.5 0.3 0.09 12.9 0.1 1.7 2 1 0 2 2 1 0 AAA domain AAA_18 PF13238.6 gi|385804748|ref|YP_005841148.1| - 0.068 13.7 0.1 0.23 12.0 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|385804748|ref|YP_005841148.1| - 0.071 13.2 0.1 0.21 11.6 0.0 1.8 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|385804748|ref|YP_005841148.1| - 0.071 12.8 0.2 0.1 12.3 0.2 1.5 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|385804748|ref|YP_005841148.1| - 0.074 12.2 0.4 0.18 11.0 0.1 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_16 PF13191.6 gi|385804748|ref|YP_005841148.1| - 0.083 13.3 0.1 0.13 12.6 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain IstB_IS21 PF01695.17 gi|385804748|ref|YP_005841148.1| - 0.097 12.4 0.0 0.49 10.1 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein GTP_EFTU PF00009.27 gi|385804748|ref|YP_005841148.1| - 0.14 11.7 0.2 0.8 9.2 0.0 2.1 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain Guanylate_kin PF00625.21 gi|385804748|ref|YP_005841148.1| - 0.17 11.5 0.3 8.4 6.0 0.0 2.3 2 0 0 2 2 2 0 Guanylate kinase ABC_tran PF00005.27 gi|385804749|ref|YP_005841149.1| - 1.3e-31 110.0 0.0 1.8e-31 109.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385804749|ref|YP_005841149.1| - 4.4e-13 49.7 2.4 1.4e-05 25.1 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|385804749|ref|YP_005841149.1| - 2.7e-05 24.0 0.0 0.0059 16.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|385804749|ref|YP_005841149.1| - 0.00062 19.5 0.1 0.0013 18.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|385804749|ref|YP_005841149.1| - 0.0011 19.5 0.2 0.0022 18.5 0.2 1.4 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|385804749|ref|YP_005841149.1| - 0.0021 18.0 0.1 0.014 15.3 0.0 2.0 2 0 0 2 2 2 1 RsgA GTPase SMC_N PF02463.19 gi|385804749|ref|YP_005841149.1| - 0.0036 16.8 1.2 0.12 11.8 1.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 gi|385804749|ref|YP_005841149.1| - 0.0095 16.0 0.0 0.018 15.1 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase FlbD PF06289.11 gi|385804749|ref|YP_005841149.1| - 0.016 14.8 0.3 0.031 13.9 0.3 1.5 1 0 0 1 1 1 0 Flagellar and Swarming motility proteins ABC_ATPase PF09818.9 gi|385804749|ref|YP_005841149.1| - 0.023 13.5 0.3 0.95 8.2 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class BCA_ABC_TP_C PF12399.8 gi|385804749|ref|YP_005841149.1| - 0.024 14.5 0.3 0.056 13.4 0.3 1.6 1 1 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter DUF2813 PF11398.8 gi|385804749|ref|YP_005841149.1| - 0.039 13.2 0.0 0.055 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) Zeta_toxin PF06414.12 gi|385804749|ref|YP_005841149.1| - 0.041 13.1 0.0 0.063 12.6 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|385804749|ref|YP_005841149.1| - 0.049 13.9 0.3 0.25 11.6 0.3 2.2 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|385804749|ref|YP_005841149.1| - 0.11 12.2 0.0 0.15 11.8 0.0 1.3 1 1 0 1 1 1 0 AAA domain BPD_transp_2 PF02653.16 gi|385804750|ref|YP_005841150.1| - 2.2e-37 128.7 38.8 2.7e-37 128.4 38.8 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|385804751|ref|YP_005841151.1| - 3.5e-50 170.6 26.3 4.1e-50 170.4 26.3 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.6 gi|385804752|ref|YP_005841152.1| - 2.2e-44 152.5 6.9 2.7e-44 152.2 6.9 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|385804752|ref|YP_005841152.1| - 2.4e-19 69.7 0.0 2.7e-19 69.5 0.0 1.0 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|385804752|ref|YP_005841152.1| - 4.7e-10 39.0 0.0 1.4e-05 24.3 0.0 2.3 2 1 0 2 2 2 2 Periplasmic binding protein domain TAT_signal PF10518.9 gi|385804752|ref|YP_005841152.1| - 0.028 14.2 1.8 0.028 14.2 1.8 2.5 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence PhoU PF01895.19 gi|385804754|ref|YP_005841154.1| - 2.7e-39 133.5 8.8 5.8e-23 81.2 3.1 2.1 2 0 0 2 2 2 2 PhoU domain ATP-synt_D PF01813.17 gi|385804754|ref|YP_005841154.1| - 0.073 12.9 0.1 0.15 11.9 0.0 1.6 2 0 0 2 2 2 0 ATP synthase subunit D PhoU PF01895.19 gi|385804755|ref|YP_005841155.1| - 1.9e-23 82.7 9.2 1.3e-17 64.1 1.6 2.4 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|385804755|ref|YP_005841155.1| - 2.9e-11 43.0 0.0 6.9e-11 41.8 0.0 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Cep57_MT_bd PF06657.13 gi|385804755|ref|YP_005841155.1| - 0.081 13.4 0.6 0.19 12.2 0.1 1.9 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 FlgN PF05130.12 gi|385804755|ref|YP_005841155.1| - 0.11 13.0 1.2 0.42 11.1 0.3 2.2 2 0 0 2 2 2 0 FlgN protein Ribosomal_S8e PF01201.22 gi|385804756|ref|YP_005841156.1| - 6.3e-30 104.1 0.9 7.1e-30 104.0 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e DUF4845 PF16137.5 gi|385804756|ref|YP_005841156.1| - 0.072 14.0 0.3 0.11 13.4 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4845) DUF2240 PF09999.9 gi|385804757|ref|YP_005841157.1| - 1.1e-52 177.5 0.1 1.3e-52 177.3 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) CPSase_L_D2 PF02786.17 gi|385804758|ref|YP_005841158.1| - 2.5e-95 318.0 0.2 1.7e-57 194.3 0.0 2.9 2 1 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|385804758|ref|YP_005841158.1| - 4e-26 91.8 0.4 9.1e-26 90.6 0.4 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATPgrasp_Ter PF15632.6 gi|385804758|ref|YP_005841158.1| - 3e-14 52.9 0.0 4.4e-06 26.5 0.0 3.4 3 0 0 3 3 3 2 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.13 gi|385804758|ref|YP_005841158.1| - 4e-13 49.4 0.0 5.9e-09 35.8 0.0 2.5 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|385804758|ref|YP_005841158.1| - 4.9e-13 49.0 0.0 2.9e-07 30.2 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_3 PF02655.14 gi|385804758|ref|YP_005841158.1| - 5.2e-09 36.4 0.1 6.5e-05 23.0 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.19 gi|385804758|ref|YP_005841158.1| - 0.0069 16.2 0.0 0.022 14.5 0.0 1.8 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TrkA_N PF02254.18 gi|385804758|ref|YP_005841158.1| - 0.11 12.8 2.3 12 6.2 0.1 3.5 3 0 0 3 3 3 0 TrkA-N domain FxsA PF04186.13 gi|385804762|ref|YP_005841162.1| - 1.4e-30 105.7 8.5 1.7e-30 105.3 8.5 1.1 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein Thioredox_DsbH PF03190.15 gi|385804763|ref|YP_005841163.1| - 4.3e-23 82.1 0.0 7.9e-23 81.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|385804763|ref|YP_005841163.1| - 7.9e-11 42.0 0.0 1.8e-10 40.9 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.20 gi|385804763|ref|YP_005841163.1| - 2.5e-06 27.4 0.0 4.5e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|385804763|ref|YP_005841163.1| - 0.049 14.1 0.0 0.12 12.8 0.0 1.7 1 0 0 1 1 1 0 Thioredoxin-like domain GCHY-1 PF02649.14 gi|385804764|ref|YP_005841164.1| - 8.8e-74 248.3 1.4 1e-73 248.1 1.4 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 FolB PF02152.18 gi|385804764|ref|YP_005841164.1| - 0.0082 16.7 0.3 0.094 13.3 0.1 2.4 2 0 0 2 2 2 1 Dihydroneopterin aldolase DNA_pol_B_palm PF14792.6 gi|385804764|ref|YP_005841164.1| - 0.029 14.6 0.0 0.079 13.2 0.0 1.7 1 0 0 1 1 1 0 DNA polymerase beta palm Pyr_redox_2 PF07992.14 gi|385804766|ref|YP_005841166.1| - 1.2e-42 146.1 0.1 1.6e-42 145.8 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Rubredoxin_C PF18267.1 gi|385804766|ref|YP_005841166.1| - 2.2e-08 33.9 0.0 4.7e-07 29.6 0.0 2.7 3 0 0 3 3 3 1 Rubredoxin NAD+ reductase C-terminal domain Pyr_redox_3 PF13738.6 gi|385804766|ref|YP_005841166.1| - 2.1e-07 30.5 0.1 5.3e-07 29.2 0.0 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|385804766|ref|YP_005841166.1| - 4e-07 30.5 0.6 0.00029 21.3 0.0 2.7 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|385804766|ref|YP_005841166.1| - 0.057 12.1 0.0 5.1 5.7 0.0 2.9 3 1 0 3 3 3 0 HI0933-like protein NAD_binding_8 PF13450.6 gi|385804766|ref|YP_005841166.1| - 0.11 12.7 2.3 2.6 8.3 0.0 3.1 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|385804766|ref|YP_005841166.1| - 0.26 10.8 2.3 5.6 6.4 0.0 2.7 2 1 0 3 3 3 0 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|385804768|ref|YP_005841168.1| - 2.5e-31 109.5 0.0 3.3e-31 109.1 0.0 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|385804768|ref|YP_005841168.1| - 2.5e-12 46.8 0.9 1e-11 44.8 0.4 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|385804768|ref|YP_005841168.1| - 4.6e-06 26.1 2.9 1.2e-05 24.7 0.2 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|385804768|ref|YP_005841168.1| - 1.3e-05 24.5 3.3 2.4e-05 23.6 3.3 1.4 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|385804768|ref|YP_005841168.1| - 1.3e-05 24.9 2.4 2.7e-05 23.9 1.0 2.0 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|385804768|ref|YP_005841168.1| - 4e-05 23.2 0.7 7.6e-05 22.2 0.7 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|385804768|ref|YP_005841168.1| - 0.00034 19.8 0.5 0.00074 18.7 0.5 1.6 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|385804768|ref|YP_005841168.1| - 0.0022 16.8 1.7 0.0034 16.1 1.7 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox PF00070.27 gi|385804768|ref|YP_005841168.1| - 0.0053 17.3 2.2 0.017 15.7 1.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|385804768|ref|YP_005841168.1| - 0.019 13.8 0.9 0.046 12.6 0.4 1.8 2 0 0 2 2 2 0 Tryptophan halogenase AlaDh_PNT_C PF01262.21 gi|385804768|ref|YP_005841168.1| - 0.034 13.5 0.5 0.059 12.7 0.5 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|385804768|ref|YP_005841168.1| - 0.054 12.5 0.1 0.085 11.9 0.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|385804768|ref|YP_005841168.1| - 0.059 13.2 0.4 0.1 12.5 0.4 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|385804768|ref|YP_005841168.1| - 0.063 13.4 0.1 0.15 12.3 0.1 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_3 PF13738.6 gi|385804768|ref|YP_005841168.1| - 0.083 12.1 1.9 0.12 11.6 1.0 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FMO-like PF00743.19 gi|385804768|ref|YP_005841168.1| - 0.089 11.2 0.0 0.12 10.7 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like NAD_binding_9 PF13454.6 gi|385804768|ref|YP_005841168.1| - 0.098 12.6 0.3 0.23 11.4 0.3 1.6 1 0 0 1 1 1 0 FAD-NAD(P)-binding ApbA PF02558.16 gi|385804768|ref|YP_005841168.1| - 0.2 11.3 0.9 0.39 10.3 0.9 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.19 gi|385804768|ref|YP_005841168.1| - 0.35 10.1 1.5 0.69 9.1 1.5 1.5 1 0 0 1 1 1 0 FAD binding domain Thi4 PF01946.17 gi|385804768|ref|YP_005841168.1| - 0.45 9.7 6.1 0.095 11.9 1.2 2.3 3 0 0 3 3 3 0 Thi4 family MCRA PF06100.11 gi|385804768|ref|YP_005841168.1| - 0.87 8.3 3.2 1.2 7.8 0.2 2.1 2 0 0 2 2 2 0 MCRA family GHMP_kinases_N PF00288.26 gi|385804769|ref|YP_005841169.1| - 5.2e-13 49.0 2.8 5.2e-13 49.0 2.8 2.5 3 0 0 3 3 3 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|385804769|ref|YP_005841169.1| - 3.8e-07 30.4 0.1 7.6e-07 29.4 0.1 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal Tubulin PF00091.25 gi|385804769|ref|YP_005841169.1| - 0.0017 18.6 0.0 0.003 17.8 0.0 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain SOR_SNZ PF01680.17 gi|385804770|ref|YP_005841170.1| - 7e-99 329.7 3.3 8.9e-99 329.4 3.3 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|385804770|ref|YP_005841170.1| - 9.2e-10 38.2 2.9 1.7e-06 27.6 0.5 2.3 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|385804770|ref|YP_005841170.1| - 0.017 14.3 0.0 0.27 10.4 0.0 2.2 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase Acyl-CoA_dh_N PF02771.16 gi|385804770|ref|YP_005841170.1| - 0.057 14.1 0.1 0.11 13.1 0.1 1.5 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, N-terminal domain OMPdecase PF00215.24 gi|385804770|ref|YP_005841170.1| - 0.077 12.6 0.1 0.14 11.7 0.1 1.4 1 0 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF1405 PF07187.11 gi|385804771|ref|YP_005841171.1| - 1.1e-49 168.4 14.6 1.3e-49 168.2 14.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) SRP_TPR_like PF17004.5 gi|385804772|ref|YP_005841172.1| - 0.02 14.9 0.3 0.064 13.3 0.1 1.9 2 0 0 2 2 2 0 Putative TPR-like repeat DUF3311 PF11755.8 gi|385804774|ref|YP_005841174.1| - 4.9e-11 42.4 15.3 6.2e-11 42.1 15.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DUF4191 PF13829.6 gi|385804774|ref|YP_005841174.1| - 0.3 10.4 1.5 0.34 10.2 1.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) Toprim_4 PF13662.6 gi|385804775|ref|YP_005841175.1| - 3.2e-11 43.5 0.1 9.1e-11 42.1 0.1 1.8 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|385804775|ref|YP_005841175.1| - 1.2e-05 25.7 0.0 3.3e-05 24.2 0.0 1.8 1 0 0 1 1 1 1 Toprim-like Macoilin PF09726.9 gi|385804775|ref|YP_005841175.1| - 3 6.3 19.9 4.2 5.8 19.9 1.2 1 0 0 1 1 1 0 Macoilin family Acetyltransf_1 PF00583.25 gi|385804776|ref|YP_005841176.1| - 4.9e-09 36.5 0.0 6.2e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|385804776|ref|YP_005841176.1| - 4e-07 30.4 0.0 8.8e-07 29.3 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|385804776|ref|YP_005841176.1| - 1.2e-06 28.4 0.0 1.6e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|385804776|ref|YP_005841176.1| - 0.00028 20.8 0.0 0.00051 20.0 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|385804776|ref|YP_005841176.1| - 0.019 15.1 0.0 0.24 11.5 0.0 2.1 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain CRIM PF16978.5 gi|385804776|ref|YP_005841176.1| - 0.023 14.8 0.0 0.034 14.3 0.0 1.3 1 0 0 1 1 1 0 SAPK-interacting protein 1 (Sin1), middle CRIM domain DUF92 PF01940.16 gi|385804777|ref|YP_005841177.1| - 2.6e-50 171.1 13.8 2.6e-50 171.1 13.8 2.8 2 1 0 2 2 2 2 Integral membrane protein DUF92 CarS-like PF01864.17 gi|385804777|ref|YP_005841177.1| - 1.6 8.6 15.3 0.05 13.6 2.5 3.2 2 1 1 3 3 3 0 CDP-archaeol synthase Prenyltransf PF01255.19 gi|385804778|ref|YP_005841178.1| - 3.1e-25 89.0 0.0 1.5e-24 86.8 0.0 1.8 2 0 0 2 2 2 1 Putative undecaprenyl diphosphate synthase Prenyltransf PF01255.19 gi|385804779|ref|YP_005841179.1| - 4.6e-66 222.6 0.0 5.9e-66 222.2 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase NTR PF01759.21 gi|385804780|ref|YP_005841180.1| - 0.018 14.8 0.0 0.025 14.4 0.0 1.2 1 0 0 1 1 1 0 UNC-6/NTR/C345C module AsnC_trans_reg2 PF17805.1 gi|385804781|ref|YP_005841181.1| - 5.4e-47 157.8 1.1 3.1e-22 78.5 0.0 2.3 2 0 0 2 2 2 2 AsnC-like ligand binding domain NAD_binding_7 PF13241.6 gi|385804782|ref|YP_005841182.1| - 6.6e-23 81.1 0.0 1.6e-22 79.9 0.0 1.6 1 1 1 2 2 2 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.6 gi|385804782|ref|YP_005841182.1| - 6.5e-12 44.7 0.1 2.7e-11 42.7 0.0 2.1 2 0 0 2 2 2 1 Sirohaem biosynthesis protein central TrkA_N PF02254.18 gi|385804782|ref|YP_005841182.1| - 0.0076 16.5 0.2 0.049 13.9 0.2 2.2 1 1 0 1 1 1 1 TrkA-N domain Shikimate_DH PF01488.20 gi|385804783|ref|YP_005841183.1| - 7.6e-31 107.0 0.3 1.6e-30 106.0 0.3 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.15 gi|385804783|ref|YP_005841183.1| - 2.3e-30 105.3 0.7 5.5e-30 104.1 0.1 1.9 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.20 gi|385804783|ref|YP_005841183.1| - 2.1e-20 73.0 2.9 4.2e-20 72.0 2.9 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 gi|385804783|ref|YP_005841183.1| - 2.3e-05 24.9 0.3 2.3e-05 24.9 0.3 2.8 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|385804783|ref|YP_005841183.1| - 8.1e-05 22.9 3.2 0.00011 22.5 0.1 2.7 3 1 1 4 4 4 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_2 PF03446.15 gi|385804783|ref|YP_005841183.1| - 0.0001 22.5 0.1 0.0003 21.0 0.1 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Glu_dehyd_C PF16912.5 gi|385804783|ref|YP_005841183.1| - 0.00014 21.4 1.1 0.00028 20.4 1.1 1.5 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus 2-Hacid_dh_C PF02826.19 gi|385804783|ref|YP_005841183.1| - 0.00028 20.3 0.1 0.00056 19.3 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|385804783|ref|YP_005841183.1| - 0.00038 20.9 0.2 0.0062 17.0 0.1 2.5 2 0 0 2 2 2 1 Putative NAD(P)-binding zf-C4H2 PF10146.9 gi|385804783|ref|YP_005841183.1| - 0.0037 17.6 7.1 0.0043 17.4 5.4 1.8 1 1 0 2 2 2 1 Zinc finger-containing protein ApbA PF02558.16 gi|385804783|ref|YP_005841183.1| - 0.0082 15.8 0.2 0.1 12.2 0.0 2.3 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.18 gi|385804783|ref|YP_005841183.1| - 0.022 15.0 0.1 0.078 13.2 0.1 2.0 1 0 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.18 gi|385804783|ref|YP_005841183.1| - 0.024 14.5 0.1 0.024 14.5 0.1 2.5 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|385804783|ref|YP_005841183.1| - 0.034 14.2 0.4 0.069 13.2 0.4 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|385804783|ref|YP_005841183.1| - 0.087 13.7 1.6 0.14 13.0 0.1 2.0 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold EF-hand_11 PF08976.11 gi|385804783|ref|YP_005841183.1| - 0.11 13.4 0.0 0.23 12.3 0.0 1.5 1 0 0 1 1 1 0 EF-hand domain Peptidase_C58 PF03543.14 gi|385804783|ref|YP_005841183.1| - 1.4 8.6 3.1 6.2 6.5 3.2 1.9 2 1 0 2 2 2 0 Yersinia/Haemophilus virulence surface antigen Pterin_4a PF01329.19 gi|385804784|ref|YP_005841184.1| - 1.2e-25 89.5 0.0 1.3e-25 89.4 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase HAD_2 PF13419.6 gi|385804785|ref|YP_005841185.1| - 6.7e-18 65.4 0.0 8.4e-18 65.1 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|385804785|ref|YP_005841185.1| - 4.4e-09 37.0 0.2 8e-09 36.2 0.2 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|385804785|ref|YP_005841185.1| - 1.4e-08 35.3 0.0 1.6e-06 28.6 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase MoeA_N PF03453.17 gi|385804786|ref|YP_005841186.1| - 1.6e-39 135.2 5.3 2.7e-39 134.4 5.3 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|385804786|ref|YP_005841186.1| - 1.9e-23 82.7 0.0 3.1e-23 82.0 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.7 gi|385804786|ref|YP_005841186.1| - 1.6e-15 56.7 0.3 7.1e-15 54.6 0.0 2.2 2 1 0 2 2 2 1 PBP superfamily domain MoeA_C PF03454.15 gi|385804786|ref|YP_005841186.1| - 1.1e-13 51.1 0.3 1.5e-12 47.5 0.1 2.6 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) MoeA_N PF03453.17 gi|385804787|ref|YP_005841187.1| - 4.5e-37 127.2 1.7 7.4e-37 126.5 1.7 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|385804787|ref|YP_005841187.1| - 2.9e-23 82.1 0.2 5.4e-23 81.3 0.2 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|385804787|ref|YP_005841187.1| - 1.4e-13 50.8 5.0 4.1e-12 46.1 0.6 3.8 3 1 0 3 3 3 1 MoeA C-terminal region (domain IV) DUF2709 PF10915.8 gi|385804787|ref|YP_005841187.1| - 0.21 10.8 0.0 0.31 10.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2709) HSP20 PF00011.21 gi|385804788|ref|YP_005841188.1| - 4.3e-11 42.9 0.0 5.1e-11 42.6 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|385804788|ref|YP_005841188.1| - 0.00029 20.3 0.0 0.0007 19.1 0.0 1.7 1 1 0 1 1 1 1 HSP20-like domain found in ArsA GvpH PF05455.11 gi|385804788|ref|YP_005841188.1| - 0.052 13.6 0.3 0.093 12.8 0.3 1.4 1 0 0 1 1 1 0 GvpH PIH1_CS PF18201.1 gi|385804788|ref|YP_005841188.1| - 0.11 12.9 0.0 0.17 12.3 0.0 1.3 1 1 0 1 1 1 0 PIH1 CS-like domain ABC1 PF03109.16 gi|385804789|ref|YP_005841189.1| - 1.8e-27 95.9 0.0 5.9e-27 94.2 0.0 1.8 2 0 0 2 2 2 1 ABC1 family APH PF01636.23 gi|385804789|ref|YP_005841189.1| - 0.00033 20.6 0.1 0.09 12.7 0.0 2.8 2 1 0 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|385804789|ref|YP_005841189.1| - 0.0011 18.4 0.0 0.002 17.6 0.0 1.4 1 0 0 1 1 1 1 Protein kinase domain Phage_holin_3_6 PF07332.11 gi|385804789|ref|YP_005841189.1| - 0.055 13.5 0.1 0.14 12.2 0.1 1.7 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III EFP_N PF08207.12 gi|385804790|ref|YP_005841190.1| - 0.0069 16.4 0.0 0.016 15.2 0.0 1.6 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain Arginase PF00491.21 gi|385804791|ref|YP_005841191.1| - 4.2e-56 190.5 1.2 5.3e-56 190.2 1.2 1.0 1 0 0 1 1 1 1 Arginase family SurE PF01975.17 gi|385804792|ref|YP_005841192.1| - 3.6e-44 150.9 0.3 4.8e-44 150.5 0.3 1.1 1 0 0 1 1 1 1 Survival protein SurE Methyltransf_12 PF08242.12 gi|385804793|ref|YP_005841193.1| - 3e-05 24.7 0.0 7.6e-05 23.4 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|385804793|ref|YP_005841193.1| - 0.00011 22.1 0.0 0.00019 21.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Rsm22 PF09243.10 gi|385804793|ref|YP_005841193.1| - 0.068 12.4 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_25 PF13649.6 gi|385804793|ref|YP_005841193.1| - 0.084 13.6 0.0 0.24 12.1 0.0 1.9 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|385804793|ref|YP_005841193.1| - 0.089 13.5 0.0 0.23 12.1 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain PALP PF00291.25 gi|385804793|ref|YP_005841193.1| - 0.11 11.9 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme PCMT PF01135.19 gi|385804793|ref|YP_005841193.1| - 0.12 12.1 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PDH PF02153.17 gi|385804794|ref|YP_005841194.1| - 1.3e-10 40.7 3.4 2e-09 36.8 3.4 2.0 1 1 0 1 1 1 1 Prephenate dehydrogenase Gp_dh_N PF00044.24 gi|385804794|ref|YP_005841194.1| - 1e-05 25.8 0.3 0.00049 20.4 0.1 2.2 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|385804794|ref|YP_005841194.1| - 0.00032 20.6 0.7 0.0005 20.0 0.1 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|385804794|ref|YP_005841194.1| - 0.00075 19.2 0.0 0.0012 18.5 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 gi|385804794|ref|YP_005841194.1| - 0.0023 18.2 0.5 0.0083 16.4 0.2 2.1 2 1 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|385804794|ref|YP_005841194.1| - 0.0039 17.3 0.1 0.0073 16.4 0.1 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|385804794|ref|YP_005841194.1| - 0.0054 17.2 1.6 0.0098 16.3 0.3 1.9 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_N PF02254.18 gi|385804794|ref|YP_005841194.1| - 0.0059 16.8 0.7 0.013 15.8 0.1 2.1 2 1 0 2 2 2 1 TrkA-N domain F420_oxidored PF03807.17 gi|385804794|ref|YP_005841194.1| - 0.0066 17.0 2.3 0.011 16.3 0.3 2.2 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent DAO PF01266.24 gi|385804794|ref|YP_005841194.1| - 0.062 12.9 0.2 0.22 11.0 0.0 1.8 2 0 0 2 2 2 0 FAD dependent oxidoreductase Peptidase_M24 PF00557.24 gi|385804795|ref|YP_005841195.1| - 1.8e-45 155.2 0.3 2.3e-45 154.9 0.3 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|385804795|ref|YP_005841195.1| - 9.3e-07 29.6 0.5 3.6e-06 27.7 0.1 2.0 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain DUF4844 PF16133.5 gi|385804795|ref|YP_005841195.1| - 0.13 12.8 0.1 5.6 7.5 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4844) HTH_24 PF13412.6 gi|385804796|ref|YP_005841196.1| - 2.4e-13 49.4 0.1 4.8e-13 48.4 0.0 1.5 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|385804796|ref|YP_005841196.1| - 1.5e-09 37.7 0.0 2.8e-09 36.8 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|385804796|ref|YP_005841196.1| - 8.3e-09 35.1 0.0 1.7e-08 34.2 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|385804796|ref|YP_005841196.1| - 1.4e-06 28.1 0.0 9.1e-06 25.5 0.0 2.0 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|385804796|ref|YP_005841196.1| - 1.4e-06 28.1 0.0 8.2e-06 25.6 0.0 2.1 2 1 1 3 3 3 1 MarR family HTH_IclR PF09339.10 gi|385804796|ref|YP_005841196.1| - 2.4e-06 27.3 0.0 4.4e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|385804796|ref|YP_005841196.1| - 4.1e-06 26.8 0.0 1e-05 25.5 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|385804796|ref|YP_005841196.1| - 4.3e-06 26.8 0.0 1.4e-05 25.1 0.0 1.9 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 gi|385804796|ref|YP_005841196.1| - 6.6e-06 26.0 0.0 1.5e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|385804796|ref|YP_005841196.1| - 1.6e-05 24.6 0.0 3.1e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.20 gi|385804796|ref|YP_005841196.1| - 3.8e-05 23.5 0.0 6.6e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 gi|385804796|ref|YP_005841196.1| - 6.1e-05 22.7 0.0 0.00012 21.8 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_29 PF13551.6 gi|385804796|ref|YP_005841196.1| - 0.00014 21.9 0.0 0.00024 21.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_36 PF13730.6 gi|385804796|ref|YP_005841196.1| - 0.00046 20.1 0.0 0.00095 19.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|385804796|ref|YP_005841196.1| - 0.0005 20.4 0.0 0.0017 18.6 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator HTH_28 PF13518.6 gi|385804796|ref|YP_005841196.1| - 0.00066 19.8 0.0 0.0015 18.6 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_10 PF04967.12 gi|385804796|ref|YP_005841196.1| - 0.00079 19.2 0.1 0.0015 18.3 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_Crp_2 PF13545.6 gi|385804796|ref|YP_005841196.1| - 0.00081 19.3 0.0 0.0052 16.7 0.0 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|385804796|ref|YP_005841196.1| - 0.0012 18.7 0.3 0.0028 17.5 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_6 PF01418.17 gi|385804796|ref|YP_005841196.1| - 0.0023 17.9 0.0 0.0044 17.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family MerR PF00376.23 gi|385804796|ref|YP_005841196.1| - 0.0045 16.7 0.6 0.12 12.2 0.1 2.5 2 0 0 2 2 2 1 MerR family regulatory protein Sigma70_r4_2 PF08281.12 gi|385804796|ref|YP_005841196.1| - 0.005 16.5 0.1 0.0095 15.6 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_45 PF14947.6 gi|385804796|ref|YP_005841196.1| - 0.021 14.8 0.0 0.037 14.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_27 PF13463.6 gi|385804796|ref|YP_005841196.1| - 0.028 14.9 0.0 0.049 14.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain GntR PF00392.21 gi|385804796|ref|YP_005841196.1| - 0.038 13.6 0.0 0.1 12.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF1804 PF08822.11 gi|385804796|ref|YP_005841196.1| - 0.038 14.0 0.0 0.063 13.3 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1804) TetR_N PF00440.23 gi|385804796|ref|YP_005841196.1| - 0.039 13.8 0.1 0.065 13.0 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family LacI PF00356.21 gi|385804796|ref|YP_005841196.1| - 0.041 13.7 0.0 0.12 12.2 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family Phage_NinH PF06322.11 gi|385804796|ref|YP_005841196.1| - 0.058 13.3 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Phage NinH protein FaeA PF04703.12 gi|385804796|ref|YP_005841196.1| - 0.059 13.7 0.0 0.1 13.0 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein HTH_1 PF00126.27 gi|385804796|ref|YP_005841196.1| - 0.07 13.1 0.0 0.23 11.5 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_3 PF01381.22 gi|385804796|ref|YP_005841196.1| - 0.075 13.1 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix Sigma70_r4 PF04545.16 gi|385804796|ref|YP_005841196.1| - 0.083 12.4 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_30 PF13556.6 gi|385804796|ref|YP_005841196.1| - 0.099 12.5 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain TFIIE_alpha PF02002.17 gi|385804796|ref|YP_005841196.1| - 0.11 12.3 0.1 0.16 11.8 0.1 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit TPP_enzyme_C PF02775.21 gi|385804797|ref|YP_005841197.1| - 5.8e-31 107.3 0.2 8.3e-31 106.8 0.2 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|385804797|ref|YP_005841197.1| - 0.067 13.3 0.9 0.25 11.5 0.9 2.0 1 1 0 1 1 1 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR PF01558.18 gi|385804798|ref|YP_005841198.1| - 1.3e-52 178.4 0.0 2.4e-52 177.6 0.0 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase POR_N PF01855.19 gi|385804798|ref|YP_005841198.1| - 8.1e-49 166.4 0.1 1.8e-48 165.3 0.1 1.6 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|385804798|ref|YP_005841198.1| - 1.1e-10 41.7 0.0 2.1e-10 40.8 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|385804798|ref|YP_005841198.1| - 1.3e-05 24.8 0.1 2.5e-05 24.0 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.20 gi|385804798|ref|YP_005841198.1| - 0.12 12.3 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 Transketolase, C-terminal domain Chorismate_synt PF01264.21 gi|385804799|ref|YP_005841199.1| - 1.1e-121 405.6 0.0 1.3e-121 405.4 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase EPSP_synthase PF00275.20 gi|385804800|ref|YP_005841200.1| - 6e-105 351.3 0.6 7.2e-105 351.1 0.6 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SepSecS PF05889.13 gi|385804800|ref|YP_005841200.1| - 0.093 11.4 0.0 0.14 10.8 0.0 1.2 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS IMS PF00817.20 gi|385804801|ref|YP_005841201.1| - 1.8e-37 128.6 0.0 3.3e-37 127.8 0.0 1.4 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.8 gi|385804801|ref|YP_005841201.1| - 1.5e-10 41.8 0.0 3.7e-10 40.5 0.0 1.7 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 gi|385804801|ref|YP_005841201.1| - 4e-07 30.0 0.0 8e-07 29.0 0.0 1.6 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.6 gi|385804801|ref|YP_005841201.1| - 0.0002 21.9 0.0 0.0005 20.6 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|385804801|ref|YP_005841201.1| - 0.0021 17.8 0.0 0.005 16.6 0.0 1.6 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda TIM PF00121.18 gi|385804802|ref|YP_005841202.1| - 2.3e-09 37.0 0.0 3.2e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.14 gi|385804802|ref|YP_005841202.1| - 0.0025 17.2 0.9 0.0025 17.2 0.9 1.8 2 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG Hydrolase_like PF13242.6 gi|385804802|ref|YP_005841202.1| - 0.019 15.0 0.5 0.052 13.6 0.1 2.0 2 0 0 2 2 2 0 HAD-hyrolase-like FMN_dh PF01070.18 gi|385804802|ref|YP_005841202.1| - 0.084 11.9 4.2 0.11 11.5 3.9 1.5 1 1 0 1 1 1 0 FMN-dependent dehydrogenase HTH_3 PF01381.22 gi|385804803|ref|YP_005841203.1| - 1e-08 35.1 0.8 1.7e-08 34.4 0.8 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|385804803|ref|YP_005841203.1| - 6.7e-07 29.6 0.5 1.1e-06 28.9 0.5 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|385804803|ref|YP_005841203.1| - 6.8e-06 26.0 0.7 1.1e-05 25.3 0.7 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|385804803|ref|YP_005841203.1| - 7.1e-05 22.6 1.1 0.00012 21.8 1.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|385804803|ref|YP_005841203.1| - 0.041 13.8 0.1 0.076 13.0 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain RAP1 PF07218.11 gi|385804803|ref|YP_005841203.1| - 0.36 9.1 4.9 0.35 9.1 4.9 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) SSP160 PF06933.11 gi|385804803|ref|YP_005841203.1| - 2.9 6.0 10.8 3.7 5.6 10.8 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 CDP-OH_P_transf PF01066.21 gi|385804804|ref|YP_005841204.1| - 8e-08 33.0 0.4 8e-08 33.0 0.4 2.5 2 0 0 2 2 2 1 CDP-alcohol phosphatidyltransferase AAA_18 PF13238.6 gi|385804805|ref|YP_005841205.1| - 4.1e-18 66.2 0.1 6.6e-18 65.5 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|385804805|ref|YP_005841205.1| - 0.0044 17.4 1.1 2.8 8.4 0.0 2.7 1 1 2 3 3 3 2 AAA domain AAA_19 PF13245.6 gi|385804805|ref|YP_005841205.1| - 0.0097 16.2 0.0 0.018 15.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|385804805|ref|YP_005841205.1| - 0.012 16.0 0.1 0.017 15.5 0.1 1.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|385804805|ref|YP_005841205.1| - 0.014 15.6 0.2 0.021 15.1 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|385804805|ref|YP_005841205.1| - 0.016 14.9 0.3 0.023 14.4 0.2 1.4 1 1 0 1 1 1 0 AAA domain CPT PF07931.12 gi|385804805|ref|YP_005841205.1| - 0.022 14.6 0.7 0.03 14.2 0.7 1.5 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein FlpD PF02662.16 gi|385804805|ref|YP_005841205.1| - 0.024 14.7 0.0 0.044 13.8 0.0 1.4 1 0 0 1 1 1 0 Methyl-viologen-reducing hydrogenase, delta subunit NTPase_1 PF03266.15 gi|385804805|ref|YP_005841205.1| - 0.062 13.2 0.1 0.14 12.1 0.0 1.7 2 0 0 2 2 2 0 NTPase AAA_28 PF13521.6 gi|385804805|ref|YP_005841205.1| - 0.1 12.8 4.2 0.19 12.0 3.2 2.0 1 1 1 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|385804805|ref|YP_005841205.1| - 0.12 12.1 0.1 0.2 11.3 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|385804805|ref|YP_005841205.1| - 0.15 12.2 0.9 0.8 9.9 0.9 2.3 1 1 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|385804805|ref|YP_005841205.1| - 0.17 10.8 0.1 0.3 10.0 0.1 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA PF00004.29 gi|385804805|ref|YP_005841205.1| - 0.44 11.0 2.2 1.6 9.2 1.3 2.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 gi|385804805|ref|YP_005841205.1| - 0.61 9.4 1.9 1.3 8.3 0.2 2.3 2 1 0 2 2 2 0 KaiC Rab_bind PF16704.5 gi|385804805|ref|YP_005841205.1| - 0.74 9.9 4.3 0.78 9.8 0.2 2.5 2 1 0 2 2 2 0 Rab binding domain Aminotran_1_2 PF00155.21 gi|385804806|ref|YP_005841206.1| - 1.1e-60 205.8 0.0 1.2e-60 205.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|385804806|ref|YP_005841206.1| - 0.013 14.4 0.0 0.023 13.6 0.0 1.4 1 0 0 1 1 1 0 Allinase FTR PF01913.18 gi|385804806|ref|YP_005841206.1| - 0.068 13.1 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 Formylmethanofuran-tetrahydromethanopterin formyltransferase GMC_oxred_C PF05199.13 gi|385804807|ref|YP_005841207.1| - 6.5e-26 91.6 0.5 1.9e-25 90.1 0.5 1.8 1 1 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.19 gi|385804807|ref|YP_005841207.1| - 9.5e-15 54.7 0.0 1.7e-14 53.9 0.0 1.4 1 0 0 1 1 1 1 GMC oxidoreductase DAO PF01266.24 gi|385804807|ref|YP_005841207.1| - 1.6e-09 37.8 1.2 5.7e-08 32.7 0.7 2.7 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|385804807|ref|YP_005841207.1| - 4.7e-09 35.8 0.2 0.00071 18.8 0.1 2.3 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.6 gi|385804807|ref|YP_005841207.1| - 1.2e-06 28.7 0.0 4.5e-06 26.8 0.0 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|385804807|ref|YP_005841207.1| - 9e-06 25.0 0.1 1.4e-05 24.4 0.1 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|385804807|ref|YP_005841207.1| - 2.7e-05 23.5 0.0 0.0011 18.2 0.0 2.6 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|385804807|ref|YP_005841207.1| - 4.8e-05 22.7 0.0 0.00011 21.5 0.0 1.5 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.19 gi|385804807|ref|YP_005841207.1| - 0.00015 21.2 0.2 0.00042 19.7 0.0 1.8 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|385804807|ref|YP_005841207.1| - 0.0008 18.2 0.3 0.0018 17.1 0.1 1.6 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|385804807|ref|YP_005841207.1| - 0.0027 17.0 0.0 0.01 15.1 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|385804807|ref|YP_005841207.1| - 0.027 13.6 0.1 0.46 9.5 0.0 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A 3HCDH_N PF02737.18 gi|385804807|ref|YP_005841207.1| - 0.035 14.0 0.0 0.068 13.0 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|385804807|ref|YP_005841207.1| - 0.042 13.5 0.0 0.11 12.2 0.0 1.7 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Fer4_7 PF12838.7 gi|385804807|ref|YP_005841207.1| - 0.047 14.3 1.0 0.11 13.1 1.0 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain FAD_oxidored PF12831.7 gi|385804807|ref|YP_005841207.1| - 0.055 12.8 0.1 0.11 11.8 0.1 1.5 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|385804807|ref|YP_005841207.1| - 0.065 13.2 0.0 0.17 11.9 0.0 1.7 1 0 0 1 1 1 0 FAD-NAD(P)-binding Shikimate_DH PF01488.20 gi|385804807|ref|YP_005841207.1| - 0.11 12.6 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Gluconate_2-dh3 PF13618.6 gi|385804808|ref|YP_005841208.1| - 8.7e-05 22.8 0.0 0.00014 22.1 0.0 1.3 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 UCR_Fe-S_N PF10399.9 gi|385804808|ref|YP_005841208.1| - 0.17 11.3 0.3 0.17 11.3 0.3 2.2 3 0 0 3 3 3 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal FAA_hydrolase PF01557.18 gi|385804809|ref|YP_005841209.1| - 1.7e-65 220.8 0.0 2e-65 220.6 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Lactamase_B_3 PF13483.6 gi|385804810|ref|YP_005841210.1| - 8.7e-22 77.7 0.8 1.1e-21 77.4 0.8 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|385804810|ref|YP_005841210.1| - 1.6e-16 60.4 2.0 2.1e-16 60.0 2.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|385804810|ref|YP_005841210.1| - 3.1e-11 43.6 4.3 3.1e-11 43.6 4.3 2.0 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|385804810|ref|YP_005841210.1| - 0.13 11.7 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Hydrolase_6 PF13344.6 gi|385804811|ref|YP_005841211.1| - 5.8e-22 77.7 0.0 1.2e-21 76.7 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|385804811|ref|YP_005841211.1| - 8e-22 77.1 0.0 1.4e-21 76.3 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|385804811|ref|YP_005841211.1| - 4.3e-06 27.2 0.3 1.3e-05 25.6 0.3 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|385804811|ref|YP_005841211.1| - 3.8e-05 23.9 0.0 0.0031 17.6 0.0 2.3 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|385804811|ref|YP_005841211.1| - 0.00025 20.7 0.3 0.00071 19.2 0.1 1.9 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase zf-TFIIB PF13453.6 gi|385804812|ref|YP_005841212.1| - 0.0097 15.2 9.2 0.24 10.8 1.2 3.1 2 1 1 3 3 3 1 Transcription factor zinc-finger zinc-ribbons_6 PF07191.12 gi|385804812|ref|YP_005841212.1| - 0.026 14.5 5.6 1.3 9.1 2.6 2.2 1 1 1 2 2 2 0 zinc-ribbons zf_UBZ PF18439.1 gi|385804812|ref|YP_005841212.1| - 0.031 13.9 4.2 2.8 7.6 0.2 3.0 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|385804812|ref|YP_005841212.1| - 0.032 14.3 7.5 2.1 8.4 7.5 2.4 1 1 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|385804812|ref|YP_005841212.1| - 0.037 14.0 5.7 0.085 12.9 1.4 2.6 1 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|385804812|ref|YP_005841212.1| - 0.087 12.8 1.0 0.087 12.8 1.0 2.6 1 1 2 3 3 3 0 Putative transposase DNA-binding domain Zn_Tnp_IS1 PF03811.13 gi|385804812|ref|YP_005841212.1| - 0.3 10.9 12.4 0.52 10.1 0.3 3.7 4 0 0 4 4 4 0 InsA N-terminal domain Prok-RING_4 PF14447.6 gi|385804812|ref|YP_005841212.1| - 0.38 10.7 6.9 1.8 8.5 0.2 3.0 2 1 0 3 3 3 0 Prokaryotic RING finger family 4 zinc_ribbon_15 PF17032.5 gi|385804812|ref|YP_005841212.1| - 0.39 11.5 3.5 15 6.4 0.2 2.4 1 1 1 2 2 2 0 zinc-ribbon family zf-C4_Topoisom PF01396.19 gi|385804812|ref|YP_005841212.1| - 0.44 10.4 6.5 15 5.5 0.1 3.6 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger RPA_interact_C PF14768.6 gi|385804812|ref|YP_005841212.1| - 0.45 11.1 7.9 21 5.8 7.9 2.8 1 1 0 1 1 1 0 Replication protein A interacting C-terminal zf-Di19 PF05605.12 gi|385804812|ref|YP_005841212.1| - 0.5 10.7 6.0 18 5.7 2.1 3.3 2 1 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-piccolo PF05715.13 gi|385804812|ref|YP_005841212.1| - 0.51 10.5 3.8 0.6 10.3 0.4 2.2 2 0 0 2 2 2 0 Piccolo Zn-finger Lar_restr_allev PF14354.6 gi|385804812|ref|YP_005841212.1| - 0.64 10.4 8.4 0.61 10.5 0.9 2.7 2 1 0 2 2 2 0 Restriction alleviation protein Lar zinc_ribbon_9 PF14369.6 gi|385804812|ref|YP_005841212.1| - 0.73 10.1 11.2 1.5 9.2 0.2 3.9 3 1 1 4 4 4 0 zinc-ribbon Opy2 PF09463.10 gi|385804812|ref|YP_005841212.1| - 0.94 9.8 9.1 16 5.9 0.4 3.8 4 0 0 4 4 4 0 Opy2 protein Mu-like_Com PF10122.9 gi|385804812|ref|YP_005841212.1| - 1.9 8.0 6.3 3.6 7.1 3.9 2.5 2 1 0 2 2 2 0 Mu-like prophage protein Com Zn-ribbon_8 PF09723.10 gi|385804812|ref|YP_005841212.1| - 2.4 8.3 12.8 4 7.6 0.9 3.3 2 1 2 4 4 4 0 Zinc ribbon domain IBR PF01485.21 gi|385804812|ref|YP_005841212.1| - 4.5 7.6 9.8 5.1e+02 1.0 9.8 2.5 1 1 0 1 1 1 0 IBR domain, a half RING-finger domain zinc_ribbon_4 PF13717.6 gi|385804812|ref|YP_005841212.1| - 8.7 6.4 13.5 23 5.0 3.0 3.8 3 1 0 3 3 3 0 zinc-ribbon domain MafB19-deam PF14437.6 gi|385804813|ref|YP_005841213.1| - 1.3e-17 63.8 0.0 1.5e-17 63.6 0.0 1.0 1 0 0 1 1 1 1 MafB19-like deaminase dCMP_cyt_deam_1 PF00383.23 gi|385804813|ref|YP_005841213.1| - 2.5e-15 56.2 0.0 3.4e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region SNAD4 PF18750.1 gi|385804813|ref|YP_005841213.1| - 0.00027 21.0 0.0 0.00046 20.3 0.0 1.3 1 0 0 1 1 1 1 Secreted Novel AID/APOBEC-like Deaminase 4 NAD1 PF18778.1 gi|385804813|ref|YP_005841213.1| - 0.0021 18.2 0.0 0.0034 17.5 0.0 1.2 1 0 0 1 1 1 1 Novel AID APOBEC clade 1 APOBEC2 PF18772.1 gi|385804813|ref|YP_005841213.1| - 0.0073 16.4 0.0 0.011 15.8 0.0 1.2 1 0 0 1 1 1 1 APOBEC2 APOBEC_N PF08210.11 gi|385804813|ref|YP_005841213.1| - 0.0084 16.0 0.0 0.0092 15.9 0.0 1.1 1 0 0 1 1 1 1 APOBEC-like N-terminal domain NAD2 PF18782.1 gi|385804813|ref|YP_005841213.1| - 0.018 15.2 0.0 0.03 14.4 0.0 1.3 1 0 0 1 1 1 0 Novel AID APOBEC clade 2 LTD PF00932.19 gi|385804814|ref|YP_005841214.1| - 1.9e-23 82.9 3.5 2.8e-23 82.4 1.9 2.0 2 0 0 2 2 2 1 Lamin Tail Domain SNase PF00565.17 gi|385804814|ref|YP_005841214.1| - 4.1e-18 65.8 0.0 6.4e-18 65.2 0.0 1.3 1 0 0 1 1 1 1 Staphylococcal nuclease homologue Bromodomain PF00439.25 gi|385804814|ref|YP_005841214.1| - 0.03 14.4 0.0 0.058 13.5 0.0 1.4 1 0 0 1 1 1 0 Bromodomain OrfB_IS605 PF01385.19 gi|385804817|ref|YP_005841217.1| - 7.1e-27 94.0 0.0 2.2e-26 92.5 0.0 1.9 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|385804817|ref|YP_005841217.1| - 3.1e-14 52.6 1.9 9.6e-14 51.1 1.9 1.9 1 1 0 1 1 1 1 Putative transposase DNA-binding domain Myb_DNA-bind_5 PF13873.6 gi|385804817|ref|YP_005841217.1| - 1.2 9.3 6.1 0.79 9.8 3.8 1.9 2 0 0 2 2 2 0 Myb/SANT-like DNA-binding domain BPD_transp_1 PF00528.22 gi|385804818|ref|YP_005841218.1| - 1.8e-14 53.9 21.4 1.8e-14 53.9 21.4 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Serpulina_VSP PF05540.11 gi|385804818|ref|YP_005841218.1| - 0.13 11.3 0.2 0.2 10.7 0.2 1.2 1 0 0 1 1 1 0 Serpulina hyodysenteriae variable surface protein BPD_transp_1 PF00528.22 gi|385804819|ref|YP_005841219.1| - 1.7e-08 34.5 25.7 2.6e-07 30.5 25.8 2.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component FliP PF00813.20 gi|385804819|ref|YP_005841219.1| - 0.051 13.5 6.7 0.28 11.0 6.7 2.1 1 1 0 1 1 1 0 FliP family ABC_tran PF00005.27 gi|385804820|ref|YP_005841220.1| - 3.1e-35 121.7 0.0 5.4e-35 120.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385804820|ref|YP_005841220.1| - 9.1e-09 35.5 0.4 0.0018 18.2 0.1 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|385804820|ref|YP_005841220.1| - 5.3e-05 23.3 0.1 0.002 18.2 0.0 3.1 2 1 1 3 3 3 1 TOBE domain SMC_N PF02463.19 gi|385804820|ref|YP_005841220.1| - 0.00017 21.1 0.1 0.021 14.3 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|385804820|ref|YP_005841220.1| - 0.0021 18.3 0.0 0.0067 16.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|385804820|ref|YP_005841220.1| - 0.0055 17.1 0.2 0.035 14.5 0.2 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|385804820|ref|YP_005841220.1| - 0.0064 16.4 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|385804820|ref|YP_005841220.1| - 0.0067 16.8 0.3 0.015 15.7 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|385804820|ref|YP_005841220.1| - 0.0091 16.2 0.0 0.017 15.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|385804820|ref|YP_005841220.1| - 0.018 15.6 0.1 0.038 14.5 0.1 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|385804820|ref|YP_005841220.1| - 0.018 15.1 0.0 0.066 13.3 0.0 2.1 2 1 0 2 2 1 0 50S ribosome-binding GTPase DAP10 PF07213.11 gi|385804820|ref|YP_005841220.1| - 0.035 14.1 0.0 1.8 8.6 0.0 2.4 2 0 0 2 2 2 0 DAP10 membrane protein AAA_33 PF13671.6 gi|385804820|ref|YP_005841220.1| - 0.047 13.8 0.4 0.13 12.5 0.4 1.8 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|385804820|ref|YP_005841220.1| - 0.051 13.6 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|385804820|ref|YP_005841220.1| - 0.052 13.5 0.0 0.099 12.5 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_15 PF13175.6 gi|385804820|ref|YP_005841220.1| - 0.052 13.2 0.0 0.69 9.6 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|385804820|ref|YP_005841220.1| - 0.056 13.2 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|385804820|ref|YP_005841220.1| - 0.11 11.9 0.0 0.36 10.2 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.6 gi|385804820|ref|YP_005841220.1| - 0.12 12.1 0.0 0.39 10.5 0.0 1.8 2 0 0 2 2 1 0 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|385804820|ref|YP_005841220.1| - 0.14 12.7 0.0 0.34 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain SBP_bac_8 PF13416.6 gi|385804821|ref|YP_005841221.1| - 9.6e-16 58.4 0.0 1.5e-15 57.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|385804821|ref|YP_005841221.1| - 9.1e-10 39.0 0.1 1.7e-09 38.1 0.1 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|385804821|ref|YP_005841221.1| - 4.9e-09 36.0 0.1 4.2e-08 32.9 0.1 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|385804821|ref|YP_005841221.1| - 0.18 11.7 6.5 0.41 10.6 6.5 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Ribosomal_S10 PF00338.22 gi|385804822|ref|YP_005841222.1| - 2.2e-25 88.7 0.0 2.4e-25 88.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.27 gi|385804823|ref|YP_005841223.1| - 3.1e-56 190.0 0.0 4.4e-56 189.5 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|385804823|ref|YP_005841223.1| - 5e-37 126.6 0.1 1.4e-36 125.2 0.0 1.8 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|385804823|ref|YP_005841223.1| - 3e-16 59.6 4.0 2.4e-15 56.7 1.6 2.6 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|385804823|ref|YP_005841223.1| - 1.8e-06 28.0 0.1 1.3e-05 25.3 0.1 2.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase Gtr1_RagA PF04670.12 gi|385804823|ref|YP_005841223.1| - 0.004 16.5 0.0 0.12 11.7 0.0 2.2 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region RsgA_GTPase PF03193.16 gi|385804823|ref|YP_005841223.1| - 0.0054 16.7 0.2 0.29 11.0 0.1 2.3 2 1 0 2 2 2 1 RsgA GTPase GTP_EFTU_D4 PF14578.6 gi|385804823|ref|YP_005841223.1| - 0.008 16.1 0.6 0.023 14.6 0.6 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 SRPRB PF09439.10 gi|385804823|ref|YP_005841223.1| - 0.022 14.2 0.0 0.89 9.0 0.0 2.2 1 1 0 2 2 2 0 Signal recognition particle receptor beta subunit FeoB_N PF02421.18 gi|385804823|ref|YP_005841223.1| - 0.05 13.1 0.2 0.7 9.4 0.1 2.5 2 1 0 2 2 2 0 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|385804823|ref|YP_005841223.1| - 0.069 13.2 0.0 11 6.0 0.0 2.4 1 1 1 2 2 2 0 Dynamin family Septin PF00735.18 gi|385804823|ref|YP_005841223.1| - 0.13 11.6 0.0 0.32 10.2 0.0 1.6 1 1 0 1 1 1 0 Septin Homoserine_dh PF00742.19 gi|385804824|ref|YP_005841224.1| - 1.9e-47 161.4 0.2 3.9e-47 160.4 0.2 1.4 2 0 0 2 2 2 1 Homoserine dehydrogenase ELFV_dehydrog PF00208.21 gi|385804824|ref|YP_005841224.1| - 6.4e-10 39.2 0.0 1.6e-09 37.8 0.0 1.7 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 2-Hacid_dh_C PF02826.19 gi|385804824|ref|YP_005841224.1| - 0.0038 16.6 0.0 0.007 15.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|385804824|ref|YP_005841224.1| - 0.0073 16.9 0.1 0.018 15.7 0.1 1.7 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ApbA PF02558.16 gi|385804824|ref|YP_005841224.1| - 0.02 14.5 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ACT PF01842.25 gi|385804825|ref|YP_005841225.1| - 0.00023 20.8 0.1 0.0021 17.8 0.0 2.5 1 1 1 2 2 2 1 ACT domain GTP_EFTU PF00009.27 gi|385804826|ref|YP_005841226.1| - 1.9e-64 216.8 0.8 3.1e-64 216.1 0.8 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_C PF00679.24 gi|385804826|ref|YP_005841226.1| - 1.2e-22 79.7 0.4 1.2e-21 76.5 0.0 2.8 3 0 0 3 3 3 1 Elongation factor G C-terminus EFG_II PF14492.6 gi|385804826|ref|YP_005841226.1| - 3.5e-22 78.3 0.4 3.5e-22 78.3 0.4 1.8 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_IV PF03764.18 gi|385804826|ref|YP_005841226.1| - 1e-21 76.9 0.0 4e-21 75.0 0.0 2.1 2 0 0 2 2 2 1 Elongation factor G, domain IV GTP_EFTU_D2 PF03144.25 gi|385804826|ref|YP_005841226.1| - 4.3e-14 52.7 1.2 2.7e-13 50.1 1.2 2.5 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|385804826|ref|YP_005841226.1| - 1.4e-05 25.2 0.6 0.00012 22.2 0.1 2.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|385804826|ref|YP_005841226.1| - 0.047 13.5 0.0 0.099 12.5 0.0 1.6 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain SRPRB PF09439.10 gi|385804826|ref|YP_005841226.1| - 0.12 11.7 0.1 0.36 10.2 0.1 1.8 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit DUF948 PF06103.11 gi|385804826|ref|YP_005841226.1| - 0.14 12.5 0.0 0.76 10.1 0.0 2.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Rnk_N PF14760.6 gi|385804827|ref|YP_005841227.1| - 0.052 14.0 0.2 2.3 8.8 0.0 2.7 2 0 0 2 2 2 0 Rnk N-terminus DUF4157 PF13699.6 gi|385804827|ref|YP_005841227.1| - 0.073 13.3 1.2 0.073 13.3 1.2 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4157) Ribosomal_S7 PF00177.21 gi|385804828|ref|YP_005841228.1| - 1.6e-35 121.9 2.5 2.1e-35 121.6 2.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosom_S12_S23 PF00164.25 gi|385804829|ref|YP_005841229.1| - 4.8e-50 168.0 0.3 5.9e-50 167.7 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.17 gi|385804830|ref|YP_005841230.1| - 1.4e-12 47.3 0.0 5.2e-07 29.4 0.0 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|385804830|ref|YP_005841230.1| - 1.5e-11 44.2 0.2 5.8e-11 42.3 0.0 1.9 2 0 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.29 gi|385804830|ref|YP_005841230.1| - 0.00011 22.0 0.1 0.0043 16.8 0.1 2.2 1 1 0 1 1 1 1 KH domain KH_4 PF13083.6 gi|385804830|ref|YP_005841230.1| - 0.00017 21.4 0.0 0.028 14.3 0.0 2.2 2 0 0 2 2 2 2 KH domain RNA_pol_Rpb1_5 PF04998.17 gi|385804831|ref|YP_005841231.1| - 5.3e-47 160.5 0.7 1.8e-38 132.5 0.1 2.2 2 0 0 2 2 2 2 RNA polymerase Rpb1, domain 5 Intein_splicing PF14890.6 gi|385804831|ref|YP_005841231.1| - 4.2e-17 62.4 0.0 9.1e-17 61.3 0.0 1.6 1 0 0 1 1 1 1 Intein splicing domain HHH_4 PF14490.6 gi|385804831|ref|YP_005841231.1| - 0.051 13.6 0.2 1.5 8.9 0.1 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix containing domain RNA_pol_Rpb1_1 PF04997.12 gi|385804832|ref|YP_005841232.1| - 3.6e-108 361.6 0.0 5.4e-108 361.0 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|385804832|ref|YP_005841232.1| - 9.8e-69 230.8 0.3 1.6e-68 230.1 0.3 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.17 gi|385804832|ref|YP_005841232.1| - 1.6e-32 111.7 0.0 3.3e-32 110.6 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.18 gi|385804832|ref|YP_005841232.1| - 2.8e-27 95.6 0.0 4.8e-27 94.8 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.17 gi|385804832|ref|YP_005841232.1| - 1.3e-26 93.6 0.0 2.3e-26 92.8 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HTH_3 PF01381.22 gi|385804832|ref|YP_005841232.1| - 0.011 15.7 0.0 0.028 14.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix RNA_pol_Rpb2_6 PF00562.28 gi|385804833|ref|YP_005841233.1| - 7.5e-129 430.2 0.0 1.9e-128 428.8 0.0 1.6 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|385804833|ref|YP_005841233.1| - 2e-25 89.0 0.0 6.2e-25 87.4 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|385804833|ref|YP_005841233.1| - 3.4e-22 78.5 0.8 1.9e-21 76.1 0.6 2.2 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|385804833|ref|YP_005841233.1| - 3.3e-09 37.2 4.8 1.5e-08 35.1 5.0 2.1 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb2_1 PF04563.15 gi|385804834|ref|YP_005841234.1| - 1.4e-49 168.4 0.1 1.7e-49 168.1 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|385804834|ref|YP_005841234.1| - 4.8e-27 94.8 0.1 7.3e-27 94.2 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.16 gi|385804834|ref|YP_005841234.1| - 9.5e-25 86.6 0.0 2e-24 85.5 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb5_C PF01191.19 gi|385804835|ref|YP_005841235.1| - 1.2e-24 85.9 0.2 1.4e-24 85.7 0.2 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RIO1 PF01163.22 gi|385804836|ref|YP_005841236.1| - 1e-60 204.6 0.5 1.5e-60 204.0 0.0 1.5 2 0 0 2 2 2 1 RIO1 family APH PF01636.23 gi|385804836|ref|YP_005841236.1| - 4e-07 30.2 0.5 0.00011 22.2 0.0 2.6 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|385804836|ref|YP_005841236.1| - 3e-05 23.5 0.1 0.00011 21.6 0.1 1.8 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|385804836|ref|YP_005841236.1| - 0.00025 20.5 0.1 0.0026 17.2 0.0 2.2 3 0 0 3 3 3 1 Protein kinase domain Pkinase_fungal PF17667.1 gi|385804836|ref|YP_005841236.1| - 0.0065 15.3 0.0 0.0065 15.3 0.0 1.7 2 0 0 2 2 2 1 Fungal protein kinase GvpL_GvpF PF06386.11 gi|385804836|ref|YP_005841236.1| - 0.035 14.0 0.8 0.069 13.1 0.8 1.4 1 0 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF WaaY PF06176.11 gi|385804836|ref|YP_005841236.1| - 0.071 12.7 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) eIF-1a PF01176.19 gi|385804837|ref|YP_005841237.1| - 6.7e-25 86.7 0.4 8.8e-25 86.3 0.4 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Myosin_N PF02736.19 gi|385804837|ref|YP_005841237.1| - 0.086 12.7 2.0 0.18 11.7 0.2 2.4 2 1 0 2 2 2 0 Myosin N-terminal SH3-like domain tRNA-synt_1b PF00579.25 gi|385804838|ref|YP_005841238.1| - 7.4e-43 146.9 0.0 9e-43 146.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1c PF00749.21 gi|385804838|ref|YP_005841238.1| - 0.026 13.4 0.3 1.7 7.5 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1f PF01921.18 gi|385804838|ref|YP_005841238.1| - 0.036 13.0 0.0 4.7 6.0 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) PLDc_N PF13396.6 gi|385804839|ref|YP_005841239.1| - 5.4e-07 29.4 2.6 5.4e-07 29.4 2.6 2.3 2 1 0 2 2 2 1 Phospholipase_D-nuclease N-terminal HlyIII PF03006.20 gi|385804839|ref|YP_005841239.1| - 0.015 15.0 1.7 0.017 14.8 1.7 1.0 1 0 0 1 1 1 0 Haemolysin-III related TipE PF16972.5 gi|385804839|ref|YP_005841239.1| - 0.47 9.6 1.0 0.55 9.4 1.0 1.2 1 0 0 1 1 1 0 Na+ channel auxiliary subunit TipE DUF460 PF04312.13 gi|385804840|ref|YP_005841240.1| - 1.8e-46 157.3 1.0 1.7e-45 154.2 0.1 2.8 3 0 0 3 3 2 1 Protein of unknown function (DUF460) DUF812 PF05667.11 gi|385804840|ref|YP_005841240.1| - 4.6e-05 22.5 6.2 4.6e-05 22.5 6.2 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF812) acVLRF1 PF18859.1 gi|385804840|ref|YP_005841240.1| - 0.00035 20.9 3.1 0.00035 20.9 3.1 3.8 3 2 1 4 4 3 1 Actinobacteria/chloroflexi VLRF1 release factor HMMR_N PF15905.5 gi|385804840|ref|YP_005841240.1| - 0.0018 17.8 17.0 0.0035 16.9 17.0 1.4 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal TACC_C PF05010.14 gi|385804840|ref|YP_005841240.1| - 0.003 17.4 12.4 0.003 17.4 12.4 2.1 2 0 0 2 2 2 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal BLOC1_2 PF10046.9 gi|385804840|ref|YP_005841240.1| - 0.0045 17.2 6.2 0.096 13.0 1.5 2.6 2 0 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Exonuc_VII_L PF02601.15 gi|385804840|ref|YP_005841240.1| - 0.0087 15.7 8.2 0.0064 16.1 5.5 2.3 2 1 0 2 2 2 1 Exonuclease VII, large subunit DUF4988 PF16378.5 gi|385804840|ref|YP_005841240.1| - 0.025 14.2 1.6 2.2 7.9 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function FAM76 PF16046.5 gi|385804840|ref|YP_005841240.1| - 0.048 13.0 6.7 0.098 12.0 6.7 1.5 1 0 0 1 1 1 0 FAM76 protein SlyX PF04102.12 gi|385804840|ref|YP_005841240.1| - 0.05 14.2 10.2 0.49 11.0 1.7 3.2 1 1 0 2 2 2 0 SlyX PI3K_P85_iSH2 PF16454.5 gi|385804840|ref|YP_005841240.1| - 0.13 11.9 15.4 0.99 9.0 7.5 2.6 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Spc7 PF08317.11 gi|385804840|ref|YP_005841240.1| - 0.16 10.9 19.3 0.28 10.0 18.0 1.9 1 1 0 1 1 1 0 Spc7 kinetochore protein Laminin_II PF06009.12 gi|385804840|ref|YP_005841240.1| - 0.19 11.7 9.1 0.74 9.8 8.7 2.2 1 1 0 1 1 1 0 Laminin Domain II CENP-F_leu_zip PF10473.9 gi|385804840|ref|YP_005841240.1| - 0.24 11.4 25.1 0.017 15.1 18.0 2.5 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 GAS PF13851.6 gi|385804840|ref|YP_005841240.1| - 0.31 10.4 21.7 0.048 13.0 17.5 1.8 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding V_ATPase_I PF01496.19 gi|385804840|ref|YP_005841240.1| - 0.35 8.7 10.0 0.54 8.1 10.0 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family MIP-T3_C PF17749.1 gi|385804840|ref|YP_005841240.1| - 0.37 10.7 11.0 1.1 9.3 11.0 1.7 1 0 0 1 1 1 0 Microtubule-binding protein MIP-T3 C-terminal region HALZ PF02183.18 gi|385804840|ref|YP_005841240.1| - 0.47 10.7 6.3 12 6.2 2.8 2.8 2 0 0 2 2 2 0 Homeobox associated leucine zipper STAT_alpha PF01017.20 gi|385804840|ref|YP_005841240.1| - 0.49 10.3 7.6 1.1 9.2 7.6 1.5 1 0 0 1 1 1 0 STAT protein, all-alpha domain DivIC PF04977.15 gi|385804840|ref|YP_005841240.1| - 0.5 10.2 14.2 7.9 6.3 3.8 3.2 1 1 1 2 2 2 0 Septum formation initiator DUF16 PF01519.16 gi|385804840|ref|YP_005841240.1| - 0.57 10.7 9.4 4.8 7.7 9.3 2.4 1 1 0 1 1 1 0 Protein of unknown function DUF16 Nsp1_C PF05064.13 gi|385804840|ref|YP_005841240.1| - 0.61 9.9 10.3 0.64 9.8 0.9 2.7 1 1 1 2 2 2 0 Nsp1-like C-terminal region FlaC_arch PF05377.11 gi|385804840|ref|YP_005841240.1| - 0.77 10.2 10.0 4.5 7.8 1.6 2.9 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) PspB PF06667.12 gi|385804840|ref|YP_005841240.1| - 0.89 9.7 18.0 1.3 9.1 3.4 2.7 2 0 0 2 2 2 0 Phage shock protein B Prefoldin PF02996.17 gi|385804840|ref|YP_005841240.1| - 1.2 9.1 7.7 0.69 9.8 0.9 2.8 3 0 0 3 3 2 0 Prefoldin subunit TMF_DNA_bd PF12329.8 gi|385804840|ref|YP_005841240.1| - 2.3 8.3 25.7 0.34 10.9 14.2 3.1 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding DUF1664 PF07889.12 gi|385804840|ref|YP_005841240.1| - 2.4 8.2 9.2 3.9 7.5 1.3 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) FapA PF03961.13 gi|385804840|ref|YP_005841240.1| - 2.4 6.6 8.3 4.6 5.7 8.3 1.4 1 0 0 1 1 1 0 Flagellar Assembly Protein A DUF3450 PF11932.8 gi|385804840|ref|YP_005841240.1| - 4 6.7 22.9 0.35 10.1 6.0 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF3450) MPS2 PF17060.5 gi|385804840|ref|YP_005841240.1| - 5 6.3 13.4 13 4.9 13.2 1.7 1 1 0 1 1 1 0 Monopolar spindle protein 2 Lactamase_B_2 PF12706.7 gi|385804841|ref|YP_005841241.1| - 1.2e-21 77.1 1.3 7.6e-11 41.9 0.4 2.2 1 1 1 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|385804841|ref|YP_005841241.1| - 1.4e-15 57.9 4.1 1.5e-13 51.2 4.1 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|385804841|ref|YP_005841241.1| - 7.3e-05 22.4 0.0 0.00014 21.5 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease DNA_pol3_delta2 PF13177.6 gi|385804843|ref|YP_005841243.1| - 9.6e-11 41.7 0.0 2.3e-10 40.5 0.0 1.7 1 1 0 1 1 1 1 DNA polymerase III, delta subunit AAA PF00004.29 gi|385804843|ref|YP_005841243.1| - 1.3e-10 41.8 0.0 6.3e-10 39.6 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rep_fac_C PF08542.11 gi|385804843|ref|YP_005841243.1| - 6e-08 33.0 0.0 2.2e-07 31.2 0.0 2.0 2 0 0 2 2 2 1 Replication factor C C-terminal domain AAA_22 PF13401.6 gi|385804843|ref|YP_005841243.1| - 8.5e-08 32.6 0.0 4.5e-07 30.2 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|385804843|ref|YP_005841243.1| - 3.6e-06 27.5 0.1 7.4e-05 23.2 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_14 PF13173.6 gi|385804843|ref|YP_005841243.1| - 0.00015 21.8 0.0 0.013 15.5 0.0 2.5 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|385804843|ref|YP_005841243.1| - 0.00032 20.5 0.0 0.0021 17.8 0.0 2.0 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_11 PF13086.6 gi|385804843|ref|YP_005841243.1| - 0.00032 20.6 0.2 0.0031 17.3 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|385804843|ref|YP_005841243.1| - 0.0012 18.6 0.0 0.0027 17.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|385804843|ref|YP_005841243.1| - 0.0037 17.6 0.1 0.017 15.4 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|385804843|ref|YP_005841243.1| - 0.0073 16.0 0.0 0.065 13.0 0.0 2.4 3 0 0 3 3 3 1 AAA domain IstB_IS21 PF01695.17 gi|385804843|ref|YP_005841243.1| - 0.012 15.4 0.0 0.034 13.9 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein DNA_pol3_delta PF06144.13 gi|385804843|ref|YP_005841243.1| - 0.016 15.0 0.0 0.041 13.7 0.0 1.6 1 0 0 1 1 1 0 DNA polymerase III, delta subunit NACHT PF05729.12 gi|385804843|ref|YP_005841243.1| - 0.033 14.1 0.1 0.16 11.9 0.0 2.2 2 1 0 2 2 2 0 NACHT domain AAA_5 PF07728.14 gi|385804843|ref|YP_005841243.1| - 0.046 13.7 0.0 0.24 11.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) TniB PF05621.11 gi|385804843|ref|YP_005841243.1| - 0.055 12.9 0.0 0.12 11.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial TniB protein AAA_assoc_2 PF16193.5 gi|385804843|ref|YP_005841243.1| - 0.057 13.8 0.8 0.19 12.1 0.8 2.0 1 0 0 1 1 1 0 AAA C-terminal domain AAA_7 PF12775.7 gi|385804843|ref|YP_005841243.1| - 0.092 12.3 0.0 0.56 9.7 0.0 2.1 2 0 0 2 2 2 0 P-loop containing dynein motor region ABC_tran PF00005.27 gi|385804843|ref|YP_005841243.1| - 0.1 13.1 0.0 0.2 12.2 0.0 1.9 1 1 0 1 1 1 0 ABC transporter NTPase_1 PF03266.15 gi|385804843|ref|YP_005841243.1| - 0.12 12.3 0.0 3.5 7.5 0.0 2.3 2 0 0 2 2 2 0 NTPase AAA_18 PF13238.6 gi|385804843|ref|YP_005841243.1| - 0.14 12.7 0.0 0.26 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain PS_Dcarbxylase PF02666.15 gi|385804844|ref|YP_005841244.1| - 2.3e-27 95.8 0.0 6e-25 88.0 0.0 2.0 1 1 0 1 1 1 1 Phosphatidylserine decarboxylase Biotin_lipoyl_2 PF13533.6 gi|385804844|ref|YP_005841244.1| - 0.12 12.3 0.0 2.1 8.3 0.0 2.4 2 0 0 2 2 2 0 Biotin-lipoyl like UPF0020 PF01170.18 gi|385804845|ref|YP_005841245.1| - 4.6e-19 68.9 0.1 1.9e-18 66.9 0.1 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|385804845|ref|YP_005841245.1| - 5.3e-05 23.9 0.0 0.00012 22.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain AviRa PF11599.8 gi|385804845|ref|YP_005841245.1| - 0.0012 18.4 0.0 0.19 11.2 0.0 2.3 1 1 1 2 2 2 2 RRNA methyltransferase AviRa Cons_hypoth95 PF03602.15 gi|385804845|ref|YP_005841245.1| - 0.0014 18.3 0.0 0.0027 17.3 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 gi|385804845|ref|YP_005841245.1| - 0.016 15.8 0.0 0.035 14.7 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain THUMP PF02926.17 gi|385804845|ref|YP_005841245.1| - 0.025 14.7 0.0 0.048 13.8 0.0 1.4 1 0 0 1 1 1 0 THUMP domain TFIIB PF00382.19 gi|385804846|ref|YP_005841246.1| - 4.4e-30 103.5 4.5 2.3e-14 53.2 0.2 2.6 3 0 0 3 3 3 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|385804846|ref|YP_005841246.1| - 4.7e-12 45.2 1.7 9.3e-12 44.3 1.7 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|385804846|ref|YP_005841246.1| - 0.00016 21.1 0.2 0.031 13.8 0.0 2.7 2 0 0 2 2 2 1 Sigma-70, region 4 zf-ribbon_3 PF13248.6 gi|385804846|ref|YP_005841246.1| - 0.0021 17.4 0.8 0.61 9.6 0.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zf-RRN7 PF11781.8 gi|385804846|ref|YP_005841246.1| - 0.0086 15.7 0.3 0.015 15.0 0.3 1.4 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn-ribbon_8 PF09723.10 gi|385804846|ref|YP_005841246.1| - 0.062 13.4 3.3 0.72 10.0 0.2 2.6 1 1 1 2 2 2 0 Zinc ribbon domain DZR PF12773.7 gi|385804846|ref|YP_005841246.1| - 0.1 12.7 0.3 0.23 11.5 0.3 1.5 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|385804847|ref|YP_005841247.1| - 0.14 12.2 3.2 0.17 11.9 2.7 1.5 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TBP PF00352.21 gi|385804848|ref|YP_005841248.1| - 1.1e-56 188.7 0.0 1.7e-27 95.2 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) T4bSS_IcmS PF12608.8 gi|385804848|ref|YP_005841248.1| - 9.1e-06 25.9 0.0 0.031 14.6 0.0 2.2 2 0 0 2 2 2 2 Type IVb secretion, IcmS, effector-recruitment DUF3378 PF11858.8 gi|385804848|ref|YP_005841248.1| - 0.00035 20.6 0.0 1.2 9.4 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF218 PF02698.17 gi|385804848|ref|YP_005841248.1| - 0.023 14.7 0.0 3 7.9 0.0 2.1 1 1 1 2 2 2 0 DUF218 domain DUF192 PF02643.15 gi|385804848|ref|YP_005841248.1| - 0.15 12.2 0.0 0.59 10.3 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized ACR, COG1430 HisG PF01634.18 gi|385804850|ref|YP_005841250.1| - 7.2e-48 162.6 0.1 1.1e-47 161.9 0.1 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|385804850|ref|YP_005841250.1| - 7.2e-28 96.5 0.1 1.3e-27 95.7 0.1 1.5 1 0 0 1 1 1 1 HisG, C-terminal domain Amidohydro_1 PF01979.20 gi|385804851|ref|YP_005841251.1| - 1.3e-68 231.9 5.1 1.5e-68 231.7 5.1 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|385804851|ref|YP_005841251.1| - 1.1e-25 91.1 10.2 3.9e-19 69.5 6.7 2.5 2 1 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|385804851|ref|YP_005841251.1| - 2.7e-05 23.7 0.0 6e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Adenosine/AMP deaminase SHS2_FTSA PF02491.20 gi|385804851|ref|YP_005841251.1| - 0.11 12.9 1.5 1.1 9.7 0.3 2.9 2 1 1 3 3 3 0 SHS2 domain inserted in FTSA AdoHcyase PF05221.17 gi|385804852|ref|YP_005841252.1| - 3.6e-49 167.5 0.0 6.1e-25 88.0 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|385804852|ref|YP_005841252.1| - 1.2e-48 165.2 0.8 2.2e-48 164.4 0.5 1.5 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|385804852|ref|YP_005841252.1| - 8.4e-10 38.3 0.2 1.6e-09 37.4 0.2 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|385804852|ref|YP_005841252.1| - 1.1e-06 28.3 0.7 3.2e-06 26.8 0.2 2.0 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|385804852|ref|YP_005841252.1| - 0.014 15.6 0.1 0.041 14.1 0.1 1.8 1 0 0 1 1 1 0 TrkA-N domain Urocanase PF01175.18 gi|385804852|ref|YP_005841252.1| - 0.02 14.6 2.0 0.14 11.8 0.6 2.2 2 0 0 2 2 2 0 Urocanase Rossmann-like domain Shikimate_DH PF01488.20 gi|385804852|ref|YP_005841252.1| - 0.057 13.5 0.1 0.12 12.5 0.1 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 gi|385804852|ref|YP_005841252.1| - 0.062 13.2 0.7 0.12 12.2 0.3 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UPF0180 PF03698.13 gi|385804852|ref|YP_005841252.1| - 0.089 13.0 0.3 0.31 11.3 0.1 2.1 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0180) Sulfatase PF00884.23 gi|385804853|ref|YP_005841253.1| - 8.5e-36 123.9 0.1 1.3e-35 123.3 0.1 1.3 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|385804853|ref|YP_005841253.1| - 2.8e-07 30.5 0.0 0.0018 18.0 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase HAT PF02184.16 gi|385804853|ref|YP_005841253.1| - 0.099 12.6 0.1 0.34 10.9 0.0 1.9 2 0 0 2 2 2 0 HAT (Half-A-TPR) repeat MgtE PF01769.16 gi|385804854|ref|YP_005841254.1| - 7.1e-21 74.9 12.7 7.1e-21 74.9 12.7 1.6 2 0 0 2 2 2 1 Divalent cation transporter MgtE PF01769.16 gi|385804855|ref|YP_005841255.1| - 1.4e-19 70.7 11.7 1.4e-19 70.7 11.7 1.8 2 0 0 2 2 2 1 Divalent cation transporter SRP54 PF00448.22 gi|385804856|ref|YP_005841256.1| - 3e-62 209.7 0.1 5.9e-62 208.8 0.1 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|385804856|ref|YP_005841256.1| - 4.5e-29 101.0 3.5 4.5e-29 101.0 3.5 3.0 3 1 1 4 4 4 1 Signal peptide binding domain SRP54_N PF02881.19 gi|385804856|ref|YP_005841256.1| - 1e-18 67.3 0.3 6.1e-18 64.8 0.2 2.4 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|385804856|ref|YP_005841256.1| - 0.00096 19.2 0.0 0.003 17.6 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|385804856|ref|YP_005841256.1| - 0.0092 15.6 0.2 0.053 13.1 0.2 2.1 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|385804856|ref|YP_005841256.1| - 0.0095 15.2 0.0 0.025 13.9 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin APS_kinase PF01583.20 gi|385804856|ref|YP_005841256.1| - 0.019 14.8 0.0 0.051 13.5 0.0 1.7 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_24 PF13479.6 gi|385804856|ref|YP_005841256.1| - 0.022 14.5 0.0 0.047 13.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.15 gi|385804856|ref|YP_005841256.1| - 0.076 12.2 0.0 0.076 12.2 0.0 2.4 3 0 0 3 3 3 0 Anion-transporting ATPase DUF4618 PF15397.6 gi|385804856|ref|YP_005841256.1| - 0.08 12.4 2.3 0.35 10.2 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) AAA_22 PF13401.6 gi|385804856|ref|YP_005841256.1| - 0.086 13.1 0.6 0.37 11.1 0.0 2.4 3 1 0 3 3 3 0 AAA domain SRPRB PF09439.10 gi|385804856|ref|YP_005841256.1| - 0.1 12.0 0.1 6.3 6.2 0.0 2.4 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_33 PF13671.6 gi|385804856|ref|YP_005841256.1| - 0.12 12.5 0.0 0.33 11.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|385804857|ref|YP_005841257.1| - 2.9e-68 229.4 0.5 4.3e-68 228.8 0.5 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|385804857|ref|YP_005841257.1| - 1.1e-13 51.2 0.8 3.2e-13 49.7 0.5 1.9 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain Thymidylate_kin PF02223.17 gi|385804857|ref|YP_005841257.1| - 3.4e-05 23.6 0.1 0.0037 17.0 0.0 2.4 2 0 0 2 2 2 1 Thymidylate kinase APS_kinase PF01583.20 gi|385804857|ref|YP_005841257.1| - 8.2e-05 22.6 0.0 0.00014 21.8 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_30 PF13604.6 gi|385804857|ref|YP_005841257.1| - 0.00012 21.9 1.3 0.00042 20.1 1.3 2.0 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|385804857|ref|YP_005841257.1| - 0.00014 21.9 0.0 0.00043 20.3 0.0 1.9 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|385804857|ref|YP_005841257.1| - 0.00016 21.4 0.3 0.0004 20.0 0.3 1.6 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|385804857|ref|YP_005841257.1| - 0.00027 21.4 0.0 0.00081 19.8 0.0 1.9 1 0 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|385804857|ref|YP_005841257.1| - 0.00027 20.3 0.1 0.00048 19.5 0.1 1.4 1 0 0 1 1 1 1 Zeta toxin NTPase_1 PF03266.15 gi|385804857|ref|YP_005841257.1| - 0.00074 19.5 0.1 0.0016 18.4 0.1 1.5 1 0 0 1 1 1 1 NTPase AAA_17 PF13207.6 gi|385804857|ref|YP_005841257.1| - 0.001 19.5 0.4 0.0038 17.6 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|385804857|ref|YP_005841257.1| - 0.0022 18.3 1.3 0.012 15.8 0.6 2.6 2 1 0 2 2 2 1 AAA domain MobB PF03205.14 gi|385804857|ref|YP_005841257.1| - 0.0029 17.5 0.2 0.0078 16.1 0.1 1.7 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B KTI12 PF08433.10 gi|385804857|ref|YP_005841257.1| - 0.0035 16.8 1.1 0.0066 15.9 0.0 1.9 2 0 0 2 2 2 1 Chromatin associated protein KTI12 MeaB PF03308.16 gi|385804857|ref|YP_005841257.1| - 0.0092 15.0 0.0 0.02 13.9 0.0 1.5 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|385804857|ref|YP_005841257.1| - 0.0094 16.2 0.1 0.031 14.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain ATP_bind_1 PF03029.17 gi|385804857|ref|YP_005841257.1| - 0.012 15.4 0.0 0.026 14.3 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA PF00004.29 gi|385804857|ref|YP_005841257.1| - 0.014 15.8 0.2 0.1 13.0 0.1 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) VirC1 PF07015.11 gi|385804857|ref|YP_005841257.1| - 0.015 14.6 0.1 0.025 13.9 0.1 1.4 1 0 0 1 1 1 0 VirC1 protein AAA_33 PF13671.6 gi|385804857|ref|YP_005841257.1| - 0.017 15.3 0.0 0.057 13.6 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|385804857|ref|YP_005841257.1| - 0.021 15.2 0.2 0.055 13.8 0.1 1.7 2 0 0 2 2 1 0 AAA domain AAA_24 PF13479.6 gi|385804857|ref|YP_005841257.1| - 0.025 14.3 0.1 0.075 12.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|385804857|ref|YP_005841257.1| - 0.036 14.1 0.1 0.13 12.3 0.1 2.1 2 1 0 2 2 1 0 AAA domain 6PF2K PF01591.18 gi|385804857|ref|YP_005841257.1| - 0.046 13.0 0.0 0.077 12.3 0.0 1.3 1 0 0 1 1 1 0 6-phosphofructo-2-kinase DUF2075 PF09848.9 gi|385804857|ref|YP_005841257.1| - 0.077 12.2 0.1 0.12 11.6 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) MMR_HSR1 PF01926.23 gi|385804857|ref|YP_005841257.1| - 0.099 12.7 0.4 0.37 10.9 0.4 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.12 gi|385804857|ref|YP_005841257.1| - 0.11 12.3 0.1 0.25 11.2 0.1 1.6 2 0 0 2 2 1 0 NACHT domain Viral_helicase1 PF01443.18 gi|385804857|ref|YP_005841257.1| - 0.14 11.8 0.5 0.3 10.8 0.0 1.8 2 1 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Prefoldin PF02996.17 gi|385804858|ref|YP_005841258.1| - 2.1e-25 88.9 5.3 2.1e-25 88.9 5.3 2.2 1 1 2 3 3 3 1 Prefoldin subunit ZapB PF06005.12 gi|385804858|ref|YP_005841258.1| - 5.9e-06 26.6 24.2 0.0051 17.2 2.6 2.3 2 0 0 2 2 2 2 Cell division protein ZapB TSC22 PF01166.18 gi|385804858|ref|YP_005841258.1| - 7.6e-06 26.1 16.8 6.1e-05 23.2 4.8 2.9 2 1 1 3 3 2 2 TSC-22/dip/bun family Spc7 PF08317.11 gi|385804858|ref|YP_005841258.1| - 1.4e-05 24.1 17.2 0.00086 18.3 1.3 2.0 2 0 0 2 2 2 2 Spc7 kinetochore protein Fib_alpha PF08702.10 gi|385804858|ref|YP_005841258.1| - 4.1e-05 23.8 14.1 0.059 13.5 8.8 2.2 2 0 0 2 2 2 2 Fibrinogen alpha/beta chain family BLOC1_2 PF10046.9 gi|385804858|ref|YP_005841258.1| - 9.4e-05 22.6 15.4 0.027 14.8 5.4 2.5 2 0 0 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4988 PF16378.5 gi|385804858|ref|YP_005841258.1| - 9.5e-05 22.1 4.8 0.072 12.8 0.1 2.2 2 0 0 2 2 2 2 Domain of unknown function YabA PF06156.13 gi|385804858|ref|YP_005841258.1| - 9.7e-05 22.9 15.5 0.029 15.0 0.3 2.1 2 0 0 2 2 2 2 Initiation control protein YabA APG6_N PF17675.1 gi|385804858|ref|YP_005841258.1| - 0.00017 22.1 26.6 0.046 14.3 12.0 2.1 2 0 0 2 2 2 2 Apg6 coiled-coil region SKA2 PF16740.5 gi|385804858|ref|YP_005841258.1| - 0.00023 20.9 13.9 0.015 15.1 0.5 2.2 2 0 0 2 2 2 2 Spindle and kinetochore-associated protein 2 bZIP_1 PF00170.21 gi|385804858|ref|YP_005841258.1| - 0.00026 21.0 10.8 0.053 13.6 2.6 2.7 2 1 0 2 2 2 2 bZIP transcription factor CENP-F_leu_zip PF10473.9 gi|385804858|ref|YP_005841258.1| - 0.00026 21.0 17.9 0.023 14.7 7.2 2.3 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DivIC PF04977.15 gi|385804858|ref|YP_005841258.1| - 0.00032 20.4 3.3 0.00032 20.4 3.3 3.3 2 1 1 3 3 2 1 Septum formation initiator Med9 PF07544.13 gi|385804858|ref|YP_005841258.1| - 0.00035 20.6 16.0 0.029 14.5 6.3 2.2 2 0 0 2 2 2 2 RNA polymerase II transcription mediator complex subunit 9 Syntaxin PF00804.25 gi|385804858|ref|YP_005841258.1| - 0.00043 20.0 11.8 0.029 14.1 0.5 2.1 2 0 0 2 2 2 2 Syntaxin DUF4618 PF15397.6 gi|385804858|ref|YP_005841258.1| - 0.00051 19.5 14.8 0.01 15.2 5.9 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4618) ORF6C PF10552.9 gi|385804858|ref|YP_005841258.1| - 0.00068 19.7 10.5 0.019 15.0 0.2 2.2 2 0 0 2 2 2 1 ORF6C domain GAS PF13851.6 gi|385804858|ref|YP_005841258.1| - 0.00071 19.0 16.4 0.021 14.2 1.6 2.1 2 0 0 2 2 2 2 Growth-arrest specific micro-tubule binding Prefoldin_2 PF01920.20 gi|385804858|ref|YP_005841258.1| - 0.00076 19.4 28.2 0.071 13.1 13.5 3.3 1 1 2 3 3 2 2 Prefoldin subunit FliD_C PF07195.12 gi|385804858|ref|YP_005841258.1| - 0.0012 18.3 10.5 0.0061 16.0 4.4 2.1 2 0 0 2 2 2 1 Flagellar hook-associated protein 2 C-terminus Lzipper-MIP1 PF14389.6 gi|385804858|ref|YP_005841258.1| - 0.002 18.4 11.2 0.0023 18.2 1.4 2.3 2 0 0 2 2 2 1 Leucine-zipper of ternary complex factor MIP1 UPF0242 PF06785.11 gi|385804858|ref|YP_005841258.1| - 0.0021 18.2 21.6 0.041 14.0 9.7 2.1 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0242) N-terminus DUF4201 PF13870.6 gi|385804858|ref|YP_005841258.1| - 0.0023 17.7 13.2 0.13 12.0 0.3 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4201) ATP-synt_D PF01813.17 gi|385804858|ref|YP_005841258.1| - 0.0023 17.8 7.7 0.037 13.9 3.2 2.1 2 0 0 2 2 2 1 ATP synthase subunit D PspA_IM30 PF04012.12 gi|385804858|ref|YP_005841258.1| - 0.0025 17.4 20.7 0.019 14.6 11.1 2.1 2 0 0 2 2 2 1 PspA/IM30 family NPV_P10 PF05531.12 gi|385804858|ref|YP_005841258.1| - 0.0027 18.1 21.3 0.15 12.5 4.8 2.7 2 2 0 2 2 2 2 Nucleopolyhedrovirus P10 protein FapA PF03961.13 gi|385804858|ref|YP_005841258.1| - 0.003 16.2 11.4 0.073 11.7 3.9 2.0 1 1 0 2 2 2 2 Flagellar Assembly Protein A TMF_DNA_bd PF12329.8 gi|385804858|ref|YP_005841258.1| - 0.0032 17.4 23.6 0.0097 15.9 8.1 2.8 2 1 0 2 2 2 1 TATA element modulatory factor 1 DNA binding HAUS-augmin3 PF14932.6 gi|385804858|ref|YP_005841258.1| - 0.0034 17.0 18.5 0.027 14.0 2.5 2.0 2 0 0 2 2 2 2 HAUS augmin-like complex subunit 3 Tektin PF03148.14 gi|385804858|ref|YP_005841258.1| - 0.0036 16.1 17.2 0.13 11.0 1.7 2.1 2 0 0 2 2 2 2 Tektin family DUF5082 PF16888.5 gi|385804858|ref|YP_005841258.1| - 0.0039 17.5 20.9 0.026 14.8 3.8 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF5082) XhlA PF10779.9 gi|385804858|ref|YP_005841258.1| - 0.0047 17.1 11.7 0.19 12.0 3.0 2.7 2 1 0 2 2 2 2 Haemolysin XhlA AAA_13 PF13166.6 gi|385804858|ref|YP_005841258.1| - 0.0049 15.6 14.0 0.043 12.5 4.0 2.0 2 0 0 2 2 2 2 AAA domain DUF3450 PF11932.8 gi|385804858|ref|YP_005841258.1| - 0.005 16.2 27.4 0.17 11.2 14.4 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF3450) Sec34 PF04136.15 gi|385804858|ref|YP_005841258.1| - 0.0056 16.6 18.5 0.017 15.0 3.0 2.1 2 0 0 2 2 2 1 Sec34-like family Spectrin PF00435.21 gi|385804858|ref|YP_005841258.1| - 0.0057 17.1 18.4 0.17 12.4 3.0 2.3 2 0 0 2 2 2 2 Spectrin repeat DUF4337 PF14235.6 gi|385804858|ref|YP_005841258.1| - 0.0063 16.6 13.4 0.063 13.4 7.6 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4337) DUF1664 PF07889.12 gi|385804858|ref|YP_005841258.1| - 0.0071 16.4 17.4 0.13 12.3 2.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF1664) DHR10 PF18595.1 gi|385804858|ref|YP_005841258.1| - 0.0074 16.3 24.5 0.063 13.3 11.6 2.3 2 0 0 2 2 2 1 Designed helical repeat protein 10 domain DUF4763 PF15960.5 gi|385804858|ref|YP_005841258.1| - 0.009 15.3 14.6 0.039 13.3 0.2 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4763) Allexi_40kDa PF05549.11 gi|385804858|ref|YP_005841258.1| - 0.0092 15.5 5.5 0.61 9.5 1.8 2.1 2 0 0 2 2 2 1 Allexivirus 40kDa protein Seryl_tRNA_N PF02403.22 gi|385804858|ref|YP_005841258.1| - 0.0093 16.2 13.5 0.42 10.9 2.6 2.4 2 0 0 2 2 2 2 Seryl-tRNA synthetase N-terminal domain PHM7_cyt PF14703.6 gi|385804858|ref|YP_005841258.1| - 0.011 16.0 8.6 0.93 9.7 0.1 2.1 2 0 0 2 2 2 0 Cytosolic domain of 10TM putative phosphate transporter FlxA PF14282.6 gi|385804858|ref|YP_005841258.1| - 0.012 15.6 39.5 0.12 12.4 24.8 2.2 2 0 0 2 2 2 0 FlxA-like protein Cep57_MT_bd PF06657.13 gi|385804858|ref|YP_005841258.1| - 0.012 16.0 8.7 0.012 16.0 8.7 2.2 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 Laminin_II PF06009.12 gi|385804858|ref|YP_005841258.1| - 0.013 15.5 12.7 0.16 12.0 1.4 2.2 2 0 0 2 2 2 0 Laminin Domain II DUF2205 PF10224.9 gi|385804858|ref|YP_005841258.1| - 0.014 15.3 2.6 0.014 15.3 2.6 2.7 2 1 0 2 2 2 0 Short coiled-coil protein ketoacyl-synt PF00109.26 gi|385804858|ref|YP_005841258.1| - 0.015 14.9 0.8 0.03 13.9 0.1 1.7 2 0 0 2 2 1 0 Beta-ketoacyl synthase, N-terminal domain TMF_TATA_bd PF12325.8 gi|385804858|ref|YP_005841258.1| - 0.015 15.5 18.9 0.082 13.1 1.7 2.2 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding Jnk-SapK_ap_N PF09744.9 gi|385804858|ref|YP_005841258.1| - 0.016 15.5 19.5 0.056 13.7 8.4 2.1 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 Uds1 PF15456.6 gi|385804858|ref|YP_005841258.1| - 0.016 15.4 12.5 0.27 11.4 0.8 2.7 2 1 0 2 2 2 0 Up-regulated During Septation CK2S PF15011.6 gi|385804858|ref|YP_005841258.1| - 0.016 15.1 12.9 0.33 10.8 0.6 2.1 2 0 0 2 2 2 0 Casein Kinase 2 substrate IFT57 PF10498.9 gi|385804858|ref|YP_005841258.1| - 0.016 14.2 18.6 0.1 11.6 2.1 2.0 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 DUF5329 PF17263.2 gi|385804858|ref|YP_005841258.1| - 0.019 15.2 0.2 0.049 13.8 0.2 1.8 1 0 0 1 1 1 0 Family of unknown function (DUF5329) KASH_CCD PF14662.6 gi|385804858|ref|YP_005841258.1| - 0.02 14.7 19.9 0.19 11.6 3.6 2.1 2 0 0 2 2 2 0 Coiled-coil region of CCDC155 or KASH Synaptobrevin PF00957.21 gi|385804858|ref|YP_005841258.1| - 0.022 14.5 4.1 0.022 14.5 4.1 2.3 2 0 0 2 2 2 0 Synaptobrevin DUF948 PF06103.11 gi|385804858|ref|YP_005841258.1| - 0.023 15.0 12.6 0.61 10.4 1.3 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) CorA PF01544.18 gi|385804858|ref|YP_005841258.1| - 0.024 14.0 14.7 0.056 12.7 0.6 2.1 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein Syntaxin-6_N PF09177.11 gi|385804858|ref|YP_005841258.1| - 0.027 15.0 11.3 0.22 12.1 3.5 2.4 2 0 0 2 2 2 0 Syntaxin 6, N-terminal CC2-LZ PF16516.5 gi|385804858|ref|YP_005841258.1| - 0.028 14.8 2.3 0.028 14.8 2.3 2.8 2 1 0 2 2 2 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator YlqD PF11068.8 gi|385804858|ref|YP_005841258.1| - 0.028 14.8 23.5 0.58 10.5 14.0 2.4 2 0 0 2 2 2 0 YlqD protein CLZ PF16526.5 gi|385804858|ref|YP_005841258.1| - 0.029 14.7 19.8 0.15 12.4 10.0 2.3 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels MAD PF05557.13 gi|385804858|ref|YP_005841258.1| - 0.034 12.5 24.7 0.05 12.0 11.8 2.0 1 1 1 2 2 2 0 Mitotic checkpoint protein Spc24 PF08286.11 gi|385804858|ref|YP_005841258.1| - 0.041 14.1 21.8 0.086 13.1 1.0 2.7 2 1 0 2 2 2 0 Spc24 subunit of Ndc80 DUF4515 PF14988.6 gi|385804858|ref|YP_005841258.1| - 0.042 13.7 20.1 0.15 11.9 19.6 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4515) PhoU PF01895.19 gi|385804858|ref|YP_005841258.1| - 0.042 14.3 10.7 0.32 11.5 3.5 2.5 2 1 0 2 2 2 0 PhoU domain SHE3 PF17078.5 gi|385804858|ref|YP_005841258.1| - 0.043 13.5 15.9 0.24 11.1 5.6 2.3 2 1 0 2 2 2 0 SWI5-dependent HO expression protein 3 SKA1 PF07160.12 gi|385804858|ref|YP_005841258.1| - 0.054 13.3 13.4 0.26 11.1 5.1 2.1 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 1 MobC PF05713.11 gi|385804858|ref|YP_005841258.1| - 0.058 13.9 0.8 0.058 13.9 0.8 3.5 3 1 1 4 4 1 0 Bacterial mobilisation protein (MobC) Occludin_ELL PF07303.13 gi|385804858|ref|YP_005841258.1| - 0.058 14.1 12.2 1.6 9.5 0.9 2.2 2 0 0 2 2 2 0 Occludin homology domain EzrA PF06160.12 gi|385804858|ref|YP_005841258.1| - 0.062 11.5 15.8 0.26 9.4 3.1 2.2 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA RPW8 PF05659.11 gi|385804858|ref|YP_005841258.1| - 0.077 12.7 6.4 1.7 8.3 0.5 2.3 2 0 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 NBD94 PF16830.5 gi|385804858|ref|YP_005841258.1| - 0.082 13.3 9.3 0.15 12.5 0.4 2.2 2 0 0 2 2 2 0 Nucleotide-Binding Domain 94 of RH Ax_dynein_light PF10211.9 gi|385804858|ref|YP_005841258.1| - 0.088 12.8 18.3 0.49 10.3 9.3 2.1 2 0 0 2 2 2 0 Axonemal dynein light chain Tropomyosin_1 PF12718.7 gi|385804858|ref|YP_005841258.1| - 0.1 12.7 23.9 0.83 9.8 4.3 2.3 2 0 0 2 2 2 0 Tropomyosin like Mod_r PF07200.13 gi|385804858|ref|YP_005841258.1| - 0.11 12.6 24.2 0.5 10.5 4.0 2.1 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein SYCE1 PF15233.6 gi|385804858|ref|YP_005841258.1| - 0.11 12.5 19.4 0.12 12.5 4.3 2.3 2 0 0 2 2 2 0 Synaptonemal complex central element protein 1 Atg14 PF10186.9 gi|385804858|ref|YP_005841258.1| - 0.12 11.5 13.9 0.36 9.9 6.8 2.0 2 0 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Vps51 PF08700.11 gi|385804858|ref|YP_005841258.1| - 0.12 12.4 13.2 1.4 9.1 0.9 3.1 2 2 1 3 3 2 0 Vps51/Vps67 LPP PF04728.13 gi|385804858|ref|YP_005841258.1| - 0.13 12.6 27.0 0.4 11.1 0.5 3.9 2 2 1 3 3 3 0 Lipoprotein leucine-zipper DUF4407 PF14362.6 gi|385804858|ref|YP_005841258.1| - 0.13 11.5 19.7 0.45 9.8 19.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) HCMV_UL139 PF12507.8 gi|385804858|ref|YP_005841258.1| - 0.14 12.5 6.9 5.5 7.4 0.1 2.1 2 0 0 2 2 2 0 Human Cytomegalovirus UL139 protein COG2 PF06148.11 gi|385804858|ref|YP_005841258.1| - 0.14 12.2 13.1 0.21 11.7 0.7 2.3 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 TFR_dimer PF04253.15 gi|385804858|ref|YP_005841258.1| - 0.14 12.2 4.5 3.8 7.6 1.9 2.4 2 1 0 2 2 2 0 Transferrin receptor-like dimerisation domain CENP-H PF05837.12 gi|385804858|ref|YP_005841258.1| - 0.16 12.4 22.6 0.82 10.1 11.8 2.4 2 1 1 3 3 2 0 Centromere protein H (CENP-H) GrpE PF01025.19 gi|385804858|ref|YP_005841258.1| - 0.16 11.6 18.9 1.3 8.6 2.2 2.1 2 0 0 2 2 2 0 GrpE ATG16 PF08614.11 gi|385804858|ref|YP_005841258.1| - 0.18 12.0 28.3 0.41 10.8 5.4 2.1 1 1 0 2 2 2 0 Autophagy protein 16 (ATG16) TPR_MLP1_2 PF07926.12 gi|385804858|ref|YP_005841258.1| - 0.18 11.8 26.6 0.25 11.4 3.2 2.8 2 1 1 3 3 3 0 TPR/MLP1/MLP2-like protein ECH_2 PF16113.5 gi|385804858|ref|YP_005841258.1| - 0.19 11.2 10.0 0.24 10.8 4.1 2.0 2 0 0 2 2 2 0 Enoyl-CoA hydratase/isomerase DUF2730 PF10805.8 gi|385804858|ref|YP_005841258.1| - 0.19 11.8 10.4 2.2 8.4 2.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) JIP_LZII PF16471.5 gi|385804858|ref|YP_005841258.1| - 0.21 11.8 16.3 0.87 9.8 4.9 2.8 2 1 0 2 2 2 0 JNK-interacting protein leucine zipper II Phage_GP20 PF06810.11 gi|385804858|ref|YP_005841258.1| - 0.21 11.4 18.9 0.57 10.0 2.6 2.1 2 0 0 2 2 2 0 Phage minor structural protein GP20 Fzo_mitofusin PF04799.13 gi|385804858|ref|YP_005841258.1| - 0.22 11.1 12.6 0.9 9.1 1.4 2.2 2 0 0 2 2 2 0 fzo-like conserved region End3 PF12761.7 gi|385804858|ref|YP_005841258.1| - 0.22 11.7 12.8 0.64 10.2 3.7 2.2 2 0 0 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 FlaC_arch PF05377.11 gi|385804858|ref|YP_005841258.1| - 0.22 11.9 16.6 1.4 9.4 3.4 3.3 2 2 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF16 PF01519.16 gi|385804858|ref|YP_005841258.1| - 0.23 12.0 21.3 1.1 9.8 4.4 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF16 V_ATPase_I PF01496.19 gi|385804858|ref|YP_005841258.1| - 0.23 9.3 11.7 1.3 6.8 0.4 2.0 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family Not3 PF04065.15 gi|385804858|ref|YP_005841258.1| - 0.24 10.8 15.7 0.2 11.1 6.7 2.1 2 0 0 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component DUF4446 PF14584.6 gi|385804858|ref|YP_005841258.1| - 0.24 11.4 11.8 2.2 8.3 4.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) SOGA PF11365.8 gi|385804858|ref|YP_005841258.1| - 0.25 12.5 12.9 0.65 11.2 0.5 2.6 2 1 1 3 3 3 0 Protein SOGA Nup88 PF10168.9 gi|385804858|ref|YP_005841258.1| - 0.26 9.1 14.4 0.78 7.5 6.9 2.0 2 0 0 2 2 2 0 Nuclear pore component EMP24_GP25L PF01105.24 gi|385804858|ref|YP_005841258.1| - 0.27 11.2 13.2 1.4 8.9 3.9 2.2 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD DUF812 PF05667.11 gi|385804858|ref|YP_005841258.1| - 0.28 10.0 28.4 0.82 8.5 14.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF812) Baculo_PEP_C PF04513.12 gi|385804858|ref|YP_005841258.1| - 0.28 11.2 17.1 0.62 10.1 2.1 2.1 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus COG6 PF06419.11 gi|385804858|ref|YP_005841258.1| - 0.3 9.2 17.3 0.93 7.6 1.2 2.0 2 0 0 2 2 2 0 Conserved oligomeric complex COG6 Hemagglutinin PF00509.18 gi|385804858|ref|YP_005841258.1| - 0.32 9.4 7.1 0.23 9.8 0.1 2.0 2 0 0 2 2 2 0 Haemagglutinin Fez1 PF06818.15 gi|385804858|ref|YP_005841258.1| - 0.4 11.1 19.2 1.4 9.4 19.2 1.7 1 1 0 1 1 1 0 Fez1 TMPIT PF07851.13 gi|385804858|ref|YP_005841258.1| - 0.41 9.8 13.5 2.4 7.3 0.2 2.0 2 0 0 2 2 2 0 TMPIT-like protein Nnf1 PF03980.14 gi|385804858|ref|YP_005841258.1| - 0.43 11.0 19.8 0.56 10.6 8.7 2.3 1 1 1 2 2 2 0 Nnf1 ADIP PF11559.8 gi|385804858|ref|YP_005841258.1| - 0.44 10.6 22.8 0.27 11.3 12.6 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding LRRFIP PF09738.9 gi|385804858|ref|YP_005841258.1| - 0.45 9.9 23.6 1.5 8.2 4.4 2.1 1 1 1 2 2 2 0 LRRFIP family DUF4164 PF13747.6 gi|385804858|ref|YP_005841258.1| - 0.48 10.7 16.9 1.9 8.8 6.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) DUF4140 PF13600.6 gi|385804858|ref|YP_005841258.1| - 0.5 10.8 20.6 0.83 10.1 3.9 2.7 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) V-ATPase_G_2 PF16999.5 gi|385804858|ref|YP_005841258.1| - 0.53 10.7 18.9 0.12 12.9 10.1 2.4 2 1 0 2 2 2 0 Vacuolar (H+)-ATPase G subunit Noelin-1 PF12308.8 gi|385804858|ref|YP_005841258.1| - 0.58 10.2 12.3 2.9 7.9 0.2 2.2 2 0 0 2 2 2 0 Neurogenesis glycoprotein SlyX PF04102.12 gi|385804858|ref|YP_005841258.1| - 0.63 10.7 31.4 0.7 10.5 7.2 2.4 2 0 0 2 2 2 0 SlyX FmiP_Thoc5 PF09766.9 gi|385804858|ref|YP_005841258.1| - 0.65 9.2 14.9 2.5 7.3 7.0 2.0 2 0 0 2 2 2 0 Fms-interacting protein/Thoc5 Filament PF00038.21 gi|385804858|ref|YP_005841258.1| - 0.69 9.4 22.9 1.4 8.4 4.5 2.1 1 1 0 2 2 2 0 Intermediate filament protein HalX PF08663.10 gi|385804858|ref|YP_005841258.1| - 0.79 10.1 20.9 0.11 12.9 5.5 3.2 2 1 0 2 2 2 0 HalX domain Dor1 PF04124.12 gi|385804858|ref|YP_005841258.1| - 0.79 8.3 14.6 1 8.0 1.3 2.1 2 0 0 2 2 2 0 Dor1-like family T3SSipB PF16535.5 gi|385804858|ref|YP_005841258.1| - 0.81 10.2 23.8 0.3 11.6 3.8 2.2 1 1 1 2 2 2 0 Type III cell invasion protein SipB DUF1515 PF07439.11 gi|385804858|ref|YP_005841258.1| - 0.81 9.7 11.9 0.21 11.6 1.2 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF1515) DUF641 PF04859.12 gi|385804858|ref|YP_005841258.1| - 0.83 10.0 18.7 0.24 11.7 1.6 2.7 2 1 0 2 2 2 0 Plant protein of unknown function (DUF641) PRKG1_interact PF15898.5 gi|385804858|ref|YP_005841258.1| - 0.83 10.6 17.9 1.5 9.7 1.6 2.3 2 0 0 2 2 2 0 cGMP-dependent protein kinase interacting domain MscS_porin PF12795.7 gi|385804858|ref|YP_005841258.1| - 0.85 9.1 37.5 75 2.7 37.5 2.0 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain DLP_helical PF18709.1 gi|385804858|ref|YP_005841258.1| - 0.9 8.7 13.2 0.68 9.1 4.7 2.1 2 0 0 2 2 2 0 Dynamin-like helical domain DUF3552 PF12072.8 gi|385804858|ref|YP_005841258.1| - 0.97 8.8 23.2 0.43 10.0 11.9 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) DUF724 PF05266.14 gi|385804858|ref|YP_005841258.1| - 1.1 9.0 18.8 2.6 7.9 2.1 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF724) DASH_Dam1 PF08653.10 gi|385804858|ref|YP_005841258.1| - 1.2 9.0 12.6 2.9 7.7 1.6 3.5 2 2 0 2 2 2 0 DASH complex subunit Dam1 AAA_lid_9 PF17871.1 gi|385804858|ref|YP_005841258.1| - 1.2 9.1 14.8 6.7 6.7 0.5 2.4 2 0 0 2 2 2 0 AAA lid domain Tho2 PF11262.8 gi|385804858|ref|YP_005841258.1| - 1.2 8.2 10.5 0.32 10.1 3.6 2.0 2 0 0 2 2 2 0 Transcription factor/nuclear export subunit protein 2 DASH_Spc19 PF08287.11 gi|385804858|ref|YP_005841258.1| - 1.4 8.8 18.1 5.2 7.0 11.2 2.5 2 1 0 2 2 2 0 Spc19 Cluap1 PF10234.9 gi|385804858|ref|YP_005841258.1| - 1.6 8.1 19.5 2.3 7.6 9.9 2.0 1 1 1 2 2 2 0 Clusterin-associated protein-1 Peptidase_M16 PF00675.20 gi|385804858|ref|YP_005841258.1| - 1.7 8.6 10.5 0.76 9.7 3.5 2.1 2 0 0 2 2 2 0 Insulinase (Peptidase family M16) DUF2232 PF09991.9 gi|385804858|ref|YP_005841258.1| - 1.8 7.7 2.5 2.6 7.1 2.5 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2232) MIS13 PF08202.11 gi|385804858|ref|YP_005841258.1| - 1.9 7.7 16.4 5.4 6.2 16.4 1.6 1 1 0 1 1 1 0 Mis12-Mtw1 protein family Cep57_CLD_2 PF14197.6 gi|385804858|ref|YP_005841258.1| - 1.9 8.6 17.4 1.1 9.4 2.6 2.6 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 MtrB PF05440.12 gi|385804858|ref|YP_005841258.1| - 2 8.9 4.0 13 6.3 0.2 2.8 2 1 1 3 3 2 0 Tetrahydromethanopterin S-methyltransferase subunit B HemX PF04375.14 gi|385804858|ref|YP_005841258.1| - 2.3 7.4 28.1 2.5 7.3 14.4 2.1 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase T2SSM PF04612.12 gi|385804858|ref|YP_005841258.1| - 2.4 8.2 15.3 4.4 7.3 0.5 2.4 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M USP8_interact PF08941.10 gi|385804858|ref|YP_005841258.1| - 2.4 7.9 11.8 1.8 8.4 0.2 2.2 2 0 0 2 2 2 0 USP8 interacting Golgin_A5 PF09787.9 gi|385804858|ref|YP_005841258.1| - 2.6 7.5 31.0 4.1 6.8 6.2 2.0 1 1 1 2 2 2 0 Golgin subfamily A member 5 Cob_adeno_trans PF01923.18 gi|385804858|ref|YP_005841258.1| - 2.7 8.1 9.3 2.5 8.2 2.7 2.3 1 1 1 2 2 2 0 Cobalamin adenosyltransferase Rho_Binding PF08912.11 gi|385804858|ref|YP_005841258.1| - 2.7 8.8 22.9 1.8 9.4 9.8 2.8 2 1 0 2 2 2 0 Rho Binding DUF4200 PF13863.6 gi|385804858|ref|YP_005841258.1| - 2.8 8.4 23.3 1.8 9.0 5.6 2.6 2 1 1 3 3 2 0 Domain of unknown function (DUF4200) Csm1_N PF18504.1 gi|385804858|ref|YP_005841258.1| - 2.8 8.3 26.1 5.2 7.5 5.4 3.1 2 1 0 2 2 2 0 Csm1 N-terminal domain LMBR1 PF04791.16 gi|385804858|ref|YP_005841258.1| - 2.9 6.7 8.0 3.5 6.4 8.0 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein DHHA1 PF02272.19 gi|385804858|ref|YP_005841258.1| - 2.9 8.3 9.2 1.9 8.9 1.1 2.4 2 1 0 2 2 2 0 DHHA1 domain Herpes_UL6 PF01763.16 gi|385804858|ref|YP_005841258.1| - 3 6.3 13.3 0.52 8.8 7.5 1.9 1 1 1 2 2 2 0 Herpesvirus UL6 like ERM PF00769.19 gi|385804858|ref|YP_005841258.1| - 3.3 7.5 23.5 2.6 7.8 3.0 2.1 2 0 0 2 2 2 0 Ezrin/radixin/moesin family Alpha-2-MRAP_C PF06401.11 gi|385804858|ref|YP_005841258.1| - 3.5 7.5 14.3 20 5.0 10.4 2.1 1 1 1 2 2 2 0 Alpha-2-macroglobulin RAP, C-terminal domain Cauli_AT PF03233.13 gi|385804858|ref|YP_005841258.1| - 3.5 7.5 7.4 5.9 6.8 0.4 2.2 2 0 0 2 2 2 0 Aphid transmission protein MCU PF04678.13 gi|385804858|ref|YP_005841258.1| - 3.5 7.7 12.1 4.2 7.4 4.5 2.2 1 1 0 2 2 2 0 Mitochondrial calcium uniporter DUF4559 PF15112.6 gi|385804858|ref|YP_005841258.1| - 3.6 7.2 16.1 3 7.5 1.7 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4559) Macoilin PF09726.9 gi|385804858|ref|YP_005841258.1| - 3.8 6.0 19.6 0.36 9.3 10.4 1.9 1 1 1 2 2 2 0 Macoilin family RE_HindVP PF09519.10 gi|385804858|ref|YP_005841258.1| - 3.9 6.4 7.9 12 4.8 4.5 2.0 2 0 0 2 2 2 0 HindVP restriction endonuclease Med4 PF10018.9 gi|385804858|ref|YP_005841258.1| - 4.1 7.0 19.4 2.5 7.7 1.4 2.1 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 OmpH PF03938.14 gi|385804858|ref|YP_005841258.1| - 4.5 7.6 37.3 7.9 6.8 22.7 2.2 1 1 0 2 2 2 0 Outer membrane protein (OmpH-like) HAP1_N PF04849.13 gi|385804858|ref|YP_005841258.1| - 4.5 6.4 24.3 0.8 8.9 5.5 2.1 1 1 1 2 2 2 0 HAP1 N-terminal conserved region Nup54 PF13874.6 gi|385804858|ref|YP_005841258.1| - 4.9 7.3 19.4 3.1 7.9 2.0 2.2 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 ABC_tran_CTD PF16326.5 gi|385804858|ref|YP_005841258.1| - 5.2 7.4 33.8 5.9 7.2 10.1 3.2 2 2 1 3 3 3 0 ABC transporter C-terminal domain Lectin_N PF03954.14 gi|385804858|ref|YP_005841258.1| - 5.2 6.8 14.5 6.7 6.5 7.1 2.1 2 0 0 2 2 2 0 Hepatic lectin, N-terminal domain Paralemmin PF03285.15 gi|385804858|ref|YP_005841258.1| - 6.2 6.3 21.4 0.75 9.3 8.1 2.1 1 1 0 2 2 2 0 Paralemmin Snapin_Pallidin PF14712.6 gi|385804858|ref|YP_005841258.1| - 6.5 7.2 28.6 13 6.3 5.8 3.2 2 2 0 2 2 2 0 Snapin/Pallidin Swi5 PF07061.11 gi|385804858|ref|YP_005841258.1| - 6.5 6.9 19.9 2.6 8.2 3.9 2.8 2 1 1 3 3 3 0 Swi5 CASP_C PF08172.12 gi|385804858|ref|YP_005841258.1| - 7.3 5.9 17.6 0.87 8.9 1.6 2.3 1 1 0 1 1 1 0 CASP C terminal MctB PF11382.8 gi|385804858|ref|YP_005841258.1| - 7.3 6.2 19.8 6.5 6.4 8.3 2.4 1 1 0 2 2 2 0 Copper transport outer membrane protein, MctB L31 PF09784.9 gi|385804858|ref|YP_005841258.1| - 7.8 7.0 7.7 16 6.0 0.2 2.3 2 1 0 2 2 2 0 Mitochondrial ribosomal protein L31 Fmp27_WPPW PF10359.9 gi|385804858|ref|YP_005841258.1| - 7.9 5.2 19.0 1.9e+03 -2.6 19.0 2.0 1 1 0 1 1 0 0 RNA pol II promoter Fmp27 protein domain THOC7 PF05615.13 gi|385804858|ref|YP_005841258.1| - 8.1 6.7 22.1 6.2 7.1 3.7 2.7 2 1 0 2 2 2 0 Tho complex subunit 7 DUF2203 PF09969.9 gi|385804858|ref|YP_005841258.1| - 8.1 7.2 14.9 5.8 7.7 1.2 2.3 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) DUF2408 PF10303.9 gi|385804858|ref|YP_005841258.1| - 8.6 6.9 14.9 3.4 8.2 2.3 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2408) zf-CpG_bind_C PF12269.8 gi|385804858|ref|YP_005841258.1| - 9 6.0 12.7 20 4.9 0.2 2.1 2 0 0 2 2 2 0 CpG binding protein zinc finger C terminal domain Fungal_TACC PF12709.7 gi|385804858|ref|YP_005841258.1| - 9 6.8 18.4 7.4 7.1 2.9 2.8 2 1 0 2 2 2 0 Fungal Transforming acidic coiled-coil (TACC) proteins HOOK PF05622.12 gi|385804858|ref|YP_005841258.1| - 9.1 4.3 27.5 0.38 8.8 4.5 2.2 1 1 0 2 2 2 0 HOOK protein Dzip-like_N PF13815.6 gi|385804858|ref|YP_005841258.1| - 9.1 6.3 17.4 5.4 7.0 7.8 2.3 2 0 0 2 2 2 0 Iguana/Dzip1-like DAZ-interacting protein N-terminal Ribosomal_L18A PF01775.17 gi|385804859|ref|YP_005841259.1| - 1.4e-11 44.5 0.0 1.6e-11 44.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A eIF-6 PF01912.18 gi|385804860|ref|YP_005841260.1| - 1.3e-70 236.8 0.4 1.8e-70 236.4 0.4 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.19 gi|385804861|ref|YP_005841261.1| - 9.5e-11 41.8 0.0 1.2e-10 41.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Rap1a PF18602.1 gi|385804861|ref|YP_005841261.1| - 0.01 16.1 0.0 0.89 9.9 0.0 2.1 2 0 0 2 2 2 0 Rap1a immunity proteins Ribosomal_L39 PF00832.20 gi|385804862|ref|YP_005841262.1| - 2.7e-20 71.7 7.6 3.2e-20 71.5 7.6 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein TPR_1 PF00515.28 gi|385804863|ref|YP_005841263.1| - 2e-25 87.5 0.4 1.3e-06 27.9 0.0 5.0 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|385804863|ref|YP_005841263.1| - 7.7e-24 81.9 6.5 5.2e-05 23.0 0.1 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_8 PF13181.6 gi|385804863|ref|YP_005841263.1| - 2e-21 74.3 0.1 0.027 14.7 0.0 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|385804863|ref|YP_005841263.1| - 1e-17 64.5 12.1 5.5e-10 39.7 0.7 3.2 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|385804863|ref|YP_005841263.1| - 3.1e-16 59.4 15.8 5.6e-09 36.2 3.3 3.6 2 2 1 3 3 3 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|385804863|ref|YP_005841263.1| - 5e-16 58.1 0.7 2.5e-05 23.9 0.0 4.7 2 1 2 4 4 4 4 TPR repeat TPR_9 PF13371.6 gi|385804863|ref|YP_005841263.1| - 1.5e-12 47.5 4.4 1.3e-05 25.2 0.3 3.4 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|385804863|ref|YP_005841263.1| - 5.6e-12 45.4 13.8 2e-05 25.0 0.3 4.8 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_7 PF13176.6 gi|385804863|ref|YP_005841263.1| - 5.3e-10 38.6 7.7 0.00065 19.6 0.1 5.0 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|385804863|ref|YP_005841263.1| - 2.4e-07 30.7 2.7 0.002 18.4 0.0 4.6 5 2 0 5 5 4 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|385804863|ref|YP_005841263.1| - 2.3e-06 28.0 10.6 0.0051 17.3 0.5 3.6 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|385804863|ref|YP_005841263.1| - 2.4e-06 27.2 13.7 0.026 14.4 0.3 5.3 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|385804863|ref|YP_005841263.1| - 1.7e-05 25.1 3.1 10 7.0 0.0 5.0 5 0 0 5 5 5 0 Tetratricopeptide repeat DUF3856 PF12968.7 gi|385804863|ref|YP_005841263.1| - 0.00017 21.7 9.8 0.04 14.0 0.5 4.1 1 1 1 2 2 2 1 Domain of Unknown Function (DUF3856) TPR_4 PF07721.14 gi|385804863|ref|YP_005841263.1| - 0.00037 20.9 13.3 0.014 15.9 1.5 4.7 5 0 0 5 5 5 1 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|385804863|ref|YP_005841263.1| - 0.00043 20.3 0.8 0.89 9.7 0.0 3.4 1 1 2 3 3 3 1 Anaphase-promoting complex subunit 5 YfiO PF13525.6 gi|385804863|ref|YP_005841263.1| - 0.00083 19.1 0.4 0.0017 18.1 0.1 1.7 1 1 1 2 2 2 1 Outer membrane lipoprotein ANAPC3 PF12895.7 gi|385804863|ref|YP_005841263.1| - 0.0031 17.7 0.2 1.5 9.1 0.0 2.7 1 1 2 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_20 PF14561.6 gi|385804863|ref|YP_005841263.1| - 0.0067 16.7 3.1 0.79 10.1 0.1 3.1 1 1 2 3 3 3 1 Tetratricopeptide repeat Wzy_C_2 PF11846.8 gi|385804863|ref|YP_005841263.1| - 1.8 8.4 5.9 8.5 6.3 0.1 2.7 3 0 0 3 3 3 0 Virulence factor membrane-bound polymerase, C-terminal DUF424 PF04242.13 gi|385804864|ref|YP_005841264.1| - 1.6e-31 108.4 0.1 2.1e-31 108.0 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF424) Aminotran_5 PF00266.19 gi|385804865|ref|YP_005841265.1| - 1.3e-147 491.6 0.0 1.5e-147 491.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|385804865|ref|YP_005841265.1| - 1.3e-11 44.3 0.0 9e-10 38.2 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|385804865|ref|YP_005841265.1| - 8.6e-08 31.8 0.0 1.2e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|385804865|ref|YP_005841265.1| - 1.1e-07 31.5 0.1 1.8e-07 30.8 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|385804865|ref|YP_005841265.1| - 0.00056 18.6 0.0 0.00085 18.0 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SelA PF03841.13 gi|385804865|ref|YP_005841265.1| - 0.041 12.9 0.0 0.066 12.2 0.0 1.3 1 0 0 1 1 1 0 L-seryl-tRNA selenium transferase Pyridoxal_deC PF00282.19 gi|385804865|ref|YP_005841265.1| - 0.15 10.7 0.1 0.29 9.8 0.0 1.4 2 0 0 2 2 2 0 Pyridoxal-dependent decarboxylase conserved domain NifU_N PF01592.16 gi|385804866|ref|YP_005841266.1| - 9.5e-28 96.9 0.1 1.1e-27 96.7 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain SufE PF02657.15 gi|385804866|ref|YP_005841266.1| - 0.08 12.8 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 Fe-S metabolism associated domain TSCPD PF12637.7 gi|385804866|ref|YP_005841266.1| - 0.098 12.9 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 TSCPD domain Lip_prot_lig_C PF10437.9 gi|385804866|ref|YP_005841266.1| - 0.14 12.2 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial lipoate protein ligase C-terminus Rad51 PF08423.11 gi|385804867|ref|YP_005841267.1| - 1.1e-70 237.9 0.0 4.2e-70 235.9 0.0 1.7 1 1 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|385804867|ref|YP_005841267.1| - 2.8e-11 43.9 0.0 6.4e-11 42.7 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain AAA_25 PF13481.6 gi|385804867|ref|YP_005841267.1| - 1.8e-07 30.9 0.0 2.9e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|385804867|ref|YP_005841267.1| - 8e-07 28.8 0.0 0.012 15.1 0.0 2.2 2 0 0 2 2 2 2 recA bacterial DNA recombination protein HHH PF00633.23 gi|385804867|ref|YP_005841267.1| - 1.1e-05 25.0 0.2 0.022 14.6 0.1 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|385804867|ref|YP_005841267.1| - 4.2e-05 23.6 0.0 0.00012 22.2 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif ATPase PF06745.13 gi|385804867|ref|YP_005841267.1| - 9e-05 21.9 0.0 0.00067 19.1 0.1 2.1 2 0 0 2 2 2 1 KaiC Cdd1 PF11731.8 gi|385804867|ref|YP_005841267.1| - 0.00015 22.0 0.0 0.00035 20.8 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|385804867|ref|YP_005841267.1| - 0.017 15.0 0.0 0.19 11.6 0.0 2.5 1 1 1 2 2 2 0 Fingers domain of DNA polymerase lambda IMS_HHH PF11798.8 gi|385804867|ref|YP_005841267.1| - 0.15 12.5 0.0 0.61 10.5 0.0 2.1 2 0 0 2 2 2 0 IMS family HHH motif Peptidase_M48 PF01435.18 gi|385804869|ref|YP_005841269.1| - 5.6e-42 143.7 0.0 8.3e-42 143.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|385804869|ref|YP_005841269.1| - 7e-07 28.7 0.7 1.1e-05 24.8 0.0 2.2 2 0 0 2 2 2 1 BlaR1 peptidase M56 EI24 PF07264.11 gi|385804869|ref|YP_005841269.1| - 0.0027 18.0 0.7 2.1 8.6 0.0 2.1 2 0 0 2 2 2 2 Etoposide-induced protein 2.4 (EI24) SprT-like PF10263.9 gi|385804869|ref|YP_005841269.1| - 0.0041 17.0 0.0 0.0054 16.6 0.0 1.2 1 0 0 1 1 1 1 SprT-like family DUF3007 PF11460.8 gi|385804869|ref|YP_005841269.1| - 0.021 15.0 0.8 0.054 13.7 0.8 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) FecCD PF01032.18 gi|385804869|ref|YP_005841269.1| - 0.72 8.8 9.9 1.7 7.6 1.9 2.4 2 1 0 2 2 2 0 FecCD transport family DUF2207 PF09972.9 gi|385804869|ref|YP_005841269.1| - 4 6.1 6.6 4 6.1 0.2 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) NMD3 PF04981.13 gi|385804870|ref|YP_005841270.1| - 2.3e-61 207.4 0.1 2.7e-61 207.1 0.1 1.1 1 0 0 1 1 1 1 NMD3 family Rpr2 PF04032.16 gi|385804870|ref|YP_005841270.1| - 0.0042 17.3 0.7 0.17 12.2 0.0 3.0 3 0 0 3 3 3 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DZR PF12773.7 gi|385804870|ref|YP_005841270.1| - 0.091 12.8 5.8 1.8 8.6 3.4 3.0 2 1 0 2 2 2 0 Double zinc ribbon eIF-5_eIF-2B PF01873.17 gi|385804870|ref|YP_005841270.1| - 0.25 11.2 1.6 0.28 11.1 0.3 1.8 2 0 0 2 2 2 0 Domain found in IF2B/IF5 TF_Zn_Ribbon PF08271.12 gi|385804870|ref|YP_005841270.1| - 0.73 9.4 6.7 6.9 6.3 0.8 3.6 3 1 0 3 3 3 0 TFIIB zinc-binding YhfH PF14149.6 gi|385804870|ref|YP_005841270.1| - 0.93 9.5 3.9 25 5.0 0.0 3.7 4 0 0 4 4 4 0 YhfH-like protein Lar_restr_allev PF14354.6 gi|385804870|ref|YP_005841270.1| - 1.2 9.6 3.2 28 5.2 2.4 2.8 2 1 0 2 2 2 0 Restriction alleviation protein Lar zf-FPG_IleRS PF06827.14 gi|385804870|ref|YP_005841270.1| - 1.6 8.7 14.1 2.2 8.2 2.4 4.1 3 1 0 3 3 3 0 Zinc finger found in FPG and IleRS OrfB_Zn_ribbon PF07282.11 gi|385804870|ref|YP_005841270.1| - 2.2 8.3 4.6 27 4.8 0.4 3.2 2 1 1 3 3 3 0 Putative transposase DNA-binding domain FYVE PF01363.21 gi|385804870|ref|YP_005841270.1| - 3.5 7.8 5.8 34 4.7 1.7 2.9 2 1 0 2 2 2 0 FYVE zinc finger zinc_ribbon_2 PF13240.6 gi|385804870|ref|YP_005841270.1| - 4.4 7.2 9.5 5.8 6.8 0.2 3.9 4 0 0 4 4 4 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|385804870|ref|YP_005841270.1| - 8.4 6.4 13.5 28 4.7 1.2 4.1 4 0 0 4 4 4 0 Nudix N-terminal UPF0175 PF03683.13 gi|385804871|ref|YP_005841271.1| - 4.9e-10 39.0 0.0 6e-10 38.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) DUF218 PF02698.17 gi|385804871|ref|YP_005841271.1| - 0.018 15.1 0.0 0.019 15.0 0.0 1.0 1 0 0 1 1 1 0 DUF218 domain HTH_AraC PF00165.23 gi|385804871|ref|YP_005841271.1| - 0.019 15.0 0.0 0.028 14.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family ANT PF03374.14 gi|385804871|ref|YP_005841271.1| - 0.041 14.2 0.0 0.045 14.1 0.0 1.1 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain Helicase_C_2 PF13307.6 gi|385804872|ref|YP_005841272.1| - 8.4e-22 78.1 0.0 1.3e-21 77.6 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|385804872|ref|YP_005841272.1| - 1.8e-05 24.4 0.0 3e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 DEAD_2 AAA_22 PF13401.6 gi|385804872|ref|YP_005841272.1| - 4.2e-05 23.8 0.0 0.00031 21.0 0.0 2.3 2 1 0 2 2 2 1 AAA domain ResIII PF04851.15 gi|385804872|ref|YP_005841272.1| - 4.3e-05 23.6 0.0 0.013 15.5 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|385804872|ref|YP_005841272.1| - 6.5e-05 22.8 0.0 0.035 13.9 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_16 PF13191.6 gi|385804872|ref|YP_005841272.1| - 0.0021 18.5 0.5 0.049 14.0 0.0 2.5 1 1 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|385804872|ref|YP_005841272.1| - 0.0035 17.1 0.3 2 8.1 0.1 2.3 2 0 0 2 2 2 2 AAA domain DXP_redisom_C PF08436.12 gi|385804872|ref|YP_005841272.1| - 0.12 12.5 0.0 0.38 11.0 0.0 1.8 2 0 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain PhoH PF02562.16 gi|385804872|ref|YP_005841272.1| - 0.21 11.0 0.0 0.43 10.0 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein DUF4428 PF14471.6 gi|385804873|ref|YP_005841273.1| - 0.033 14.1 0.3 0.057 13.4 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) zf_C2H2_13 PF18508.1 gi|385804873|ref|YP_005841273.1| - 0.13 11.9 0.5 0.51 10.0 0.2 1.9 2 0 0 2 2 2 0 Zinc finger domain PHP PF02811.19 gi|385804877|ref|YP_005841277.1| - 3.5e-07 30.7 0.0 3.5e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 PHP domain YyzF PF14116.6 gi|385804878|ref|YP_005841278.1| - 0.7 10.0 5.3 0.95 9.5 1.6 2.1 2 0 0 2 2 2 0 YyzF-like protein PyrI_C PF02748.15 gi|385804878|ref|YP_005841278.1| - 0.86 9.6 3.3 0.96 9.4 1.9 1.8 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain DDE_Tnp_IS1595 PF12762.7 gi|385804879|ref|YP_005841279.1| - 4.4e-22 78.7 0.0 6.5e-22 78.2 0.0 1.3 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 gi|385804879|ref|YP_005841279.1| - 2.3e-10 40.3 4.5 4.4e-10 39.4 4.5 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.13 gi|385804879|ref|YP_005841279.1| - 7.4e-06 25.6 6.0 1.5e-05 24.7 6.0 1.5 1 0 0 1 1 1 1 InsA N-terminal domain DUF2089 PF09862.9 gi|385804879|ref|YP_005841279.1| - 0.0037 17.3 0.1 0.0072 16.3 0.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF2089) zf-Dof PF02701.15 gi|385804879|ref|YP_005841279.1| - 0.083 13.0 3.4 0.16 12.1 3.4 1.5 1 0 0 1 1 1 0 Dof domain, zinc finger CoiA PF06054.11 gi|385804879|ref|YP_005841279.1| - 0.12 11.5 0.1 0.2 10.8 0.1 1.3 1 0 0 1 1 1 0 Competence protein CoiA-like family Auxin_inducible PF02519.14 gi|385804879|ref|YP_005841279.1| - 0.14 12.3 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 Auxin responsive protein zf-ISL3 PF14690.6 gi|385804879|ref|YP_005841279.1| - 0.18 12.5 7.8 0.36 11.5 0.8 2.7 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Lar_restr_allev PF14354.6 gi|385804879|ref|YP_005841279.1| - 0.2 12.0 1.6 0.44 11.0 1.6 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar DpnI PF06044.12 gi|385804879|ref|YP_005841279.1| - 0.22 11.1 0.3 0.33 10.6 0.3 1.2 1 0 0 1 1 1 0 Dam-replacing family zinc-ribbons_6 PF07191.12 gi|385804879|ref|YP_005841279.1| - 0.22 11.5 2.8 0.42 10.6 2.8 1.4 1 0 0 1 1 1 0 zinc-ribbons SNARE_assoc PF09335.11 gi|385804880|ref|YP_005841280.1| - 9.8e-10 39.0 1.1 1.4e-09 38.5 1.1 1.3 1 1 0 1 1 1 1 SNARE associated Golgi protein ALAD PF00490.21 gi|385804881|ref|YP_005841281.1| - 2e-138 460.9 1.6 2.2e-138 460.7 1.6 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Ammonium_transp PF00909.21 gi|385804882|ref|YP_005841282.1| - 2.5e-96 322.8 41.8 2.8e-96 322.6 41.8 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family PsbY PF06298.11 gi|385804882|ref|YP_005841282.1| - 0.05 13.5 2.4 0.097 12.6 0.1 2.6 2 0 0 2 2 2 0 Photosystem II protein Y (PsbY) DUF1774 PF08611.10 gi|385804882|ref|YP_005841282.1| - 0.053 13.8 0.6 0.25 11.7 0.0 2.4 2 0 0 2 2 2 0 Fungal protein of unknown function (DUF1774) P-II PF00543.22 gi|385804883|ref|YP_005841283.1| - 1.4e-32 112.3 0.0 1.6e-32 112.1 0.0 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Aminotran_3 PF00202.21 gi|385804885|ref|YP_005841285.1| - 5.7e-65 219.6 0.0 7.4e-65 219.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|385804885|ref|YP_005841285.1| - 0.0048 16.1 0.0 0.011 14.9 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class I and II PreAtp-grasp PF18604.1 gi|385804885|ref|YP_005841285.1| - 0.052 13.2 0.2 10 5.8 0.0 2.8 4 0 0 4 4 4 0 Pre ATP-grasp domain Porphobil_deam PF01379.20 gi|385804886|ref|YP_005841286.1| - 8.1e-62 208.4 1.8 1.1e-47 162.2 0.3 2.1 2 0 0 2 2 2 2 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|385804886|ref|YP_005841286.1| - 4.7e-10 39.7 0.0 1.2e-09 38.4 0.0 1.7 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Uds1 PF15456.6 gi|385804886|ref|YP_005841286.1| - 0.013 15.7 3.4 0.013 15.7 1.4 1.9 2 0 0 2 2 2 0 Up-regulated During Septation TP_methylase PF00590.20 gi|385804887|ref|YP_005841287.1| - 7.4e-49 166.6 1.1 9.2e-49 166.3 1.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases HEM4 PF02602.15 gi|385804888|ref|YP_005841288.1| - 1.7e-42 145.4 1.2 2e-42 145.1 1.2 1.1 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD OAM_alpha PF16552.5 gi|385804889|ref|YP_005841289.1| - 0.087 12.7 0.5 0.12 12.3 0.5 1.2 1 0 0 1 1 1 0 D-ornithine 4,5-aminomutase alpha-subunit MWFE PF15879.5 gi|385804889|ref|YP_005841289.1| - 0.76 10.0 0.0 0.76 10.0 0.0 2.5 3 0 0 3 3 3 0 NADH-ubiquinone oxidoreductase MWFE subunit DUF4118 PF13493.6 gi|385804889|ref|YP_005841289.1| - 1 9.2 5.5 2.2 8.1 5.5 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4118) Cys_Met_Meta_PP PF01053.20 gi|385804890|ref|YP_005841290.1| - 1.5e-134 448.3 0.0 1.7e-134 448.2 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|385804890|ref|YP_005841290.1| - 3.7e-06 26.3 0.0 5.4e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|385804890|ref|YP_005841290.1| - 5.9e-05 22.5 0.6 0.00082 18.8 0.4 2.1 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|385804890|ref|YP_005841290.1| - 0.00023 20.2 0.0 0.00047 19.2 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V SepSecS PF05889.13 gi|385804890|ref|YP_005841290.1| - 0.096 11.4 0.0 0.14 10.8 0.0 1.3 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS PHO4 PF01384.20 gi|385804891|ref|YP_005841291.1| - 2.5e-42 145.1 26.6 4.8e-42 144.2 26.2 1.7 1 1 0 1 1 1 1 Phosphate transporter family DUF3165 PF11364.8 gi|385804891|ref|YP_005841291.1| - 7.5 7.0 8.8 1.2 9.6 0.4 3.2 4 0 0 4 4 4 0 Protein of unknown function (DUF3165) Fer2 PF00111.27 gi|385804892|ref|YP_005841292.1| - 8.3e-15 54.5 0.3 1.3e-14 53.8 0.3 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|385804892|ref|YP_005841292.1| - 0.03 14.4 0.1 0.065 13.3 0.1 1.6 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Auto_anti-p27 PF06677.12 gi|385804893|ref|YP_005841293.1| - 8e-15 54.7 0.7 1.1e-14 54.2 0.7 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 gi|385804893|ref|YP_005841293.1| - 0.0035 17.3 1.6 0.0069 16.4 1.6 1.4 1 0 0 1 1 1 1 Double zinc ribbon TackOD1 PF18551.1 gi|385804893|ref|YP_005841293.1| - 0.0044 16.7 0.4 0.0076 15.9 0.4 1.3 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 zinc-ribbons_6 PF07191.12 gi|385804893|ref|YP_005841293.1| - 0.0087 16.0 0.6 0.015 15.2 0.6 1.3 1 0 0 1 1 1 1 zinc-ribbons Zn_Tnp_IS91 PF14319.6 gi|385804893|ref|YP_005841293.1| - 0.025 14.6 0.5 0.054 13.5 0.5 1.6 1 0 0 1 1 1 0 Transposase zinc-binding domain HypA PF01155.19 gi|385804893|ref|YP_005841293.1| - 0.041 13.9 0.7 0.074 13.1 0.7 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA GFA PF04828.14 gi|385804893|ref|YP_005841293.1| - 0.051 13.9 2.1 0.76 10.2 0.1 2.6 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme SOG2 PF10428.9 gi|385804893|ref|YP_005841293.1| - 0.096 11.9 24.0 0.14 11.4 24.0 1.2 1 0 0 1 1 1 0 RAM signalling pathway protein DUF2116 PF09889.9 gi|385804893|ref|YP_005841293.1| - 1.9 8.6 4.7 3.8 7.6 1.1 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Zn-ribbon_8 PF09723.10 gi|385804893|ref|YP_005841293.1| - 1.9 8.7 4.9 17 5.7 5.2 2.2 1 1 1 2 2 2 0 Zinc ribbon domain Ldh_1_N PF00056.23 gi|385804894|ref|YP_005841294.1| - 1e-36 126.1 0.2 1.4e-36 125.6 0.2 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|385804894|ref|YP_005841294.1| - 4.1e-29 101.7 0.0 6.3e-29 101.1 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain DUF296 PF03479.15 gi|385804895|ref|YP_005841295.1| - 1.4e-19 70.4 0.0 1.7e-19 70.2 0.0 1.0 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain PolC_DP2 PF03833.13 gi|385804896|ref|YP_005841296.1| - 0 1299.2 0.0 0 1298.1 0.0 1.5 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 Intein_splicing PF14890.6 gi|385804896|ref|YP_005841296.1| - 1.3e-28 99.6 0.9 8.6e-15 54.9 0.0 2.5 2 0 0 2 2 2 2 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|385804896|ref|YP_005841296.1| - 1.1e-05 25.6 0.1 0.017 15.4 0.0 3.4 3 0 0 3 3 3 2 LAGLIDADG-like domain Hom_end PF05204.14 gi|385804896|ref|YP_005841296.1| - 3.3e-05 24.0 1.0 0.45 10.7 0.0 3.7 3 0 0 3 3 3 2 Homing endonuclease Glu-tRNAGln PF02686.15 gi|385804896|ref|YP_005841296.1| - 0.095 13.0 0.5 7.8 6.9 0.0 3.2 2 0 0 2 2 2 0 Glu-tRNAGln amidotransferase C subunit Cas_Cmr3 PF09700.10 gi|385804896|ref|YP_005841296.1| - 0.12 11.7 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cmr3) DZR PF12773.7 gi|385804896|ref|YP_005841296.1| - 0.48 10.5 15.9 11 6.2 9.1 3.2 2 1 1 3 3 3 0 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|385804896|ref|YP_005841296.1| - 4.6 7.3 14.7 2.2 8.3 1.8 3.2 2 1 1 3 3 3 0 zinc-ribbons HAD_2 PF13419.6 gi|385804897|ref|YP_005841297.1| - 1.4e-15 57.9 0.0 2.2e-15 57.2 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|385804897|ref|YP_005841297.1| - 2.8e-09 36.9 0.1 5.7e-09 35.9 0.1 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|385804897|ref|YP_005841297.1| - 3.5e-07 30.7 0.1 9.5e-06 26.0 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|385804897|ref|YP_005841297.1| - 1.3e-06 28.9 0.8 1.8e-06 28.5 0.8 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase NT5C PF06941.12 gi|385804897|ref|YP_005841297.1| - 0.039 13.8 0.0 0.072 13.0 0.0 1.4 1 0 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Sulfatase PF00884.23 gi|385804898|ref|YP_005841298.1| - 4.5e-45 154.4 0.6 6.2e-45 153.9 0.6 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|385804898|ref|YP_005841298.1| - 3.3e-11 43.4 2.6 5.1e-09 36.2 2.3 2.5 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.12 gi|385804898|ref|YP_005841298.1| - 0.12 11.4 1.3 0.21 10.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1501) DUF229 PF02995.17 gi|385804898|ref|YP_005841298.1| - 0.25 9.9 0.0 0.32 9.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF229) NifU PF01106.17 gi|385804899|ref|YP_005841299.1| - 7.3e-13 48.5 0.2 1.5e-12 47.4 0.2 1.6 1 1 1 2 2 2 1 NifU-like domain Ald_Xan_dh_C2 PF02738.18 gi|385804899|ref|YP_005841299.1| - 0.011 14.3 0.1 0.012 14.1 0.1 1.0 1 0 0 1 1 1 0 Molybdopterin-binding domain of aldehyde dehydrogenase DUF3437 PF11919.8 gi|385804901|ref|YP_005841301.1| - 0.033 14.1 1.5 0.04 13.8 1.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3437) TMF_TATA_bd PF12325.8 gi|385804902|ref|YP_005841302.1| - 0.066 13.4 2.5 0.17 12.1 0.7 2.0 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding PSK_trans_fac PF07704.11 gi|529167411|ref|YP_005841303.2| - 0.0079 16.9 5.7 0.015 16.0 4.5 2.0 1 1 1 2 2 2 1 Rv0623-like transcription factor RHH_1 PF01402.21 gi|529167411|ref|YP_005841303.2| - 0.024 14.6 0.5 0.096 12.7 0.5 2.1 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|529167411|ref|YP_005841303.2| - 0.046 13.9 0.2 0.077 13.2 0.2 1.4 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family PIN_9 PF18477.1 gi|385804904|ref|YP_005841304.1| - 0.0024 18.1 0.1 0.0034 17.7 0.1 1.3 1 0 0 1 1 1 1 PIN like domain TSC22 PF01166.18 gi|385804906|ref|YP_005841306.1| - 0.012 15.9 0.4 0.02 15.2 0.4 1.3 1 0 0 1 1 1 0 TSC-22/dip/bun family Amidase02_C PF12123.8 gi|385804910|ref|YP_005841310.1| - 0.077 12.7 0.3 0.16 11.7 0.3 1.5 1 0 0 1 1 1 0 N-acetylmuramoyl-l-alanine amidase TAF1_subA PF14929.6 gi|385804911|ref|YP_005841311.1| - 0.017 14.5 0.2 0.022 14.2 0.2 1.2 1 0 0 1 1 1 0 TAF RNA Polymerase I subunit A Syntaxin-6_N PF09177.11 gi|385804911|ref|YP_005841311.1| - 3.3 8.3 10.8 0.51 10.9 2.8 2.4 1 1 1 2 2 2 0 Syntaxin 6, N-terminal RasGEF_N_2 PF14663.6 gi|385804912|ref|YP_005841312.1| - 0.09 13.2 0.0 0.11 12.9 0.0 1.1 1 0 0 1 1 1 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain NIR_SIR_ferr PF03460.17 gi|385804913|ref|YP_005841313.1| - 0.031 14.1 0.0 0.98 9.3 0.0 2.2 2 0 0 2 2 2 0 Nitrite/Sulfite reductase ferredoxin-like half domain NTP_transf_5 PF14907.6 gi|385804914|ref|YP_005841314.1| - 4.3e-07 29.8 0.1 5.6e-07 29.4 0.1 1.3 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase AbiEii PF08843.11 gi|385804914|ref|YP_005841314.1| - 0.00014 21.9 0.2 0.0038 17.2 0.0 2.1 2 0 0 2 2 2 1 Nucleotidyl transferase AbiEii toxin, Type IV TA system Propep_M14 PF02244.16 gi|385804914|ref|YP_005841314.1| - 0.016 15.6 0.1 0.061 13.7 0.0 2.0 2 0 0 2 2 2 0 Carboxypeptidase activation peptide DUF99 PF01949.16 gi|385804914|ref|YP_005841314.1| - 0.037 13.5 0.1 0.13 11.7 0.0 1.9 3 0 0 3 3 3 0 Protein of unknown function DUF99 GrpB PF04229.14 gi|385804914|ref|YP_005841314.1| - 0.075 13.2 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 GrpB protein MarR_2 PF12802.7 gi|385804915|ref|YP_005841315.1| - 0.00081 19.2 0.4 0.0021 17.9 0.3 1.7 1 1 1 2 2 2 1 MarR family HTH_1 PF00126.27 gi|385804915|ref|YP_005841315.1| - 0.00084 19.2 0.5 0.0066 16.4 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.6 gi|385804915|ref|YP_005841315.1| - 0.0014 18.4 0.2 0.0057 16.4 0.1 2.2 2 1 1 3 3 3 1 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|385804915|ref|YP_005841315.1| - 0.0023 18.1 0.0 0.0059 16.8 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|385804915|ref|YP_005841315.1| - 0.004 16.8 0.1 0.083 12.5 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 gi|385804915|ref|YP_005841315.1| - 0.0059 16.7 0.1 0.0059 16.7 0.1 2.3 3 0 0 3 3 3 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|385804915|ref|YP_005841315.1| - 0.01 16.2 0.0 0.11 12.8 0.0 2.3 2 0 0 2 2 2 0 Transcriptional regulator TrmB PF01978.19 gi|385804915|ref|YP_005841315.1| - 0.011 15.5 0.2 0.028 14.3 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|385804915|ref|YP_005841315.1| - 0.033 13.7 0.0 0.059 12.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_30 PF13556.6 gi|385804915|ref|YP_005841315.1| - 0.047 13.5 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain RPA_C PF08784.11 gi|385804915|ref|YP_005841315.1| - 0.1 13.3 0.0 0.22 12.2 0.0 1.5 1 1 0 1 1 1 0 Replication protein A C terminal HTH_Crp_2 PF13545.6 gi|385804915|ref|YP_005841315.1| - 0.12 12.4 0.0 0.32 11.0 0.0 1.7 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain LPD11 PF18824.1 gi|385804915|ref|YP_005841315.1| - 0.24 11.5 1.3 11 6.1 0.2 2.4 1 1 1 2 2 2 0 Large polyvalent protein-associated domain 11 NTP_transf_2 PF01909.23 gi|385804917|ref|YP_005841317.1| - 9.6e-09 35.4 0.1 9.6e-09 35.4 0.1 1.6 2 0 0 2 2 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|385804917|ref|YP_005841317.1| - 6.6e-07 29.3 0.2 1.7e-06 28.0 0.2 1.6 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase HTH_11 PF08279.12 gi|385804917|ref|YP_005841317.1| - 1.6e-06 28.0 0.7 2.9e-06 27.1 0.0 1.8 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.10 gi|385804917|ref|YP_005841317.1| - 0.0008 19.2 0.0 0.0018 18.0 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_29 PF13551.6 gi|385804917|ref|YP_005841317.1| - 0.0025 17.8 0.0 0.0045 17.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix TrmB PF01978.19 gi|385804917|ref|YP_005841317.1| - 0.0067 16.3 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Adenyl_cycl_N PF12633.7 gi|385804917|ref|YP_005841317.1| - 0.032 14.1 0.0 0.045 13.7 0.0 1.2 1 0 0 1 1 1 0 Adenylate cyclase NT domain MarR_2 PF12802.7 gi|385804917|ref|YP_005841317.1| - 0.039 13.9 0.1 0.087 12.7 0.1 1.6 1 0 0 1 1 1 0 MarR family GntR PF00392.21 gi|385804917|ref|YP_005841317.1| - 0.041 13.5 0.0 0.093 12.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_23 PF13384.6 gi|385804917|ref|YP_005841317.1| - 0.046 13.5 0.0 0.097 12.5 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_24 PF13412.6 gi|385804917|ref|YP_005841317.1| - 0.09 12.4 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF294 PF03445.13 gi|385804917|ref|YP_005841317.1| - 0.17 11.7 0.1 0.28 11.0 0.1 1.4 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 SWIM PF04434.17 gi|385804920|ref|YP_005841320.1| - 0.0034 17.0 0.5 0.0086 15.7 0.5 1.7 1 0 0 1 1 1 1 SWIM zinc finger MazE_antitoxin PF04014.18 gi|385804921|ref|YP_005841321.1| - 0.036 14.0 0.2 0.058 13.3 0.2 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin zf-HC2 PF13490.6 gi|385804921|ref|YP_005841321.1| - 0.059 13.6 0.2 0.1 12.9 0.2 1.4 1 0 0 1 1 1 0 Putative zinc-finger ABC_tran PF00005.27 gi|385804925|ref|YP_005841325.1| - 3.7e-35 121.4 0.0 5.6e-35 120.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385804925|ref|YP_005841325.1| - 6e-10 39.4 0.1 0.00017 21.5 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|385804925|ref|YP_005841325.1| - 0.00016 21.3 0.0 0.00039 20.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|385804925|ref|YP_005841325.1| - 0.00086 19.3 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|385804925|ref|YP_005841325.1| - 0.0014 17.9 0.7 0.005 16.0 0.3 1.9 2 0 0 2 2 2 1 NB-ARC domain MobB PF03205.14 gi|385804925|ref|YP_005841325.1| - 0.0015 18.5 0.0 0.0022 17.9 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.6 gi|385804925|ref|YP_005841325.1| - 0.0018 18.6 0.5 0.012 15.8 0.5 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|385804925|ref|YP_005841325.1| - 0.0019 18.7 0.6 0.0043 17.6 0.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|385804925|ref|YP_005841325.1| - 0.0021 17.8 0.5 0.0053 16.5 0.5 1.8 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|385804925|ref|YP_005841325.1| - 0.0024 18.0 0.6 0.0041 17.2 0.6 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|385804925|ref|YP_005841325.1| - 0.0031 17.9 0.1 0.0044 17.4 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 gi|385804925|ref|YP_005841325.1| - 0.0039 17.1 0.3 0.007 16.3 0.3 1.4 1 0 0 1 1 1 1 NACHT domain AAA_15 PF13175.6 gi|385804925|ref|YP_005841325.1| - 0.004 16.9 0.0 0.0072 16.1 0.0 1.5 1 1 1 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|385804925|ref|YP_005841325.1| - 0.0048 16.4 0.9 0.024 14.1 0.9 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|385804925|ref|YP_005841325.1| - 0.0057 16.6 0.1 0.011 15.6 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 gi|385804925|ref|YP_005841325.1| - 0.0079 16.6 0.1 0.021 15.3 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|385804925|ref|YP_005841325.1| - 0.0083 16.1 0.5 0.02 14.8 0.1 1.8 2 0 0 2 2 2 1 NTPase cobW PF02492.19 gi|385804925|ref|YP_005841325.1| - 0.01 15.4 0.3 0.021 14.4 0.1 1.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.6 gi|385804925|ref|YP_005841325.1| - 0.019 15.0 0.0 0.039 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|385804925|ref|YP_005841325.1| - 0.029 14.0 0.0 0.029 14.0 0.0 1.1 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Mg_chelatase PF01078.21 gi|385804925|ref|YP_005841325.1| - 0.068 12.5 0.1 11 5.4 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MeaB PF03308.16 gi|385804925|ref|YP_005841325.1| - 0.076 12.0 0.1 0.12 11.3 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_5 PF07728.14 gi|385804925|ref|YP_005841325.1| - 0.11 12.5 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|385804925|ref|YP_005841325.1| - 0.13 11.9 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|385804925|ref|YP_005841325.1| - 0.13 9.7 0.2 0.19 9.2 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC_tran PF00005.27 gi|385804926|ref|YP_005841326.1| - 2.3e-31 109.2 0.0 3.5e-31 108.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385804926|ref|YP_005841326.1| - 7.1e-09 35.9 0.3 3.5e-05 23.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385804926|ref|YP_005841326.1| - 7.9e-06 25.5 0.6 5.8e-05 22.6 0.6 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|385804926|ref|YP_005841326.1| - 0.00042 20.9 0.3 0.00063 20.3 0.3 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|385804926|ref|YP_005841326.1| - 0.00066 19.4 0.1 0.0013 18.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|385804926|ref|YP_005841326.1| - 0.002 18.1 0.0 0.0047 16.8 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|385804926|ref|YP_005841326.1| - 0.0036 17.1 0.0 0.0043 16.8 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|385804926|ref|YP_005841326.1| - 0.006 16.3 0.2 0.03 14.0 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|385804926|ref|YP_005841326.1| - 0.015 15.5 0.2 0.037 14.3 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|385804926|ref|YP_005841326.1| - 0.02 14.5 0.0 0.039 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|385804926|ref|YP_005841326.1| - 0.04 14.3 0.1 0.065 13.6 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|385804926|ref|YP_005841326.1| - 0.074 13.1 0.0 0.22 11.6 0.0 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase BPD_transp_2 PF02653.16 gi|385804927|ref|YP_005841327.1| - 7.1e-35 120.5 40.2 1e-34 120.0 40.2 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|385804928|ref|YP_005841328.1| - 6.7e-40 136.9 39.8 7.9e-40 136.7 39.8 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.6 gi|385804929|ref|YP_005841329.1| - 2.7e-77 260.8 0.1 3.2e-77 260.5 0.1 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|385804929|ref|YP_005841329.1| - 1.3e-65 221.8 0.1 1.5e-65 221.5 0.1 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain NikR_C PF08753.11 gi|385804930|ref|YP_005841330.1| - 1.1e-23 83.2 2.6 1.6e-23 82.6 2.6 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|385804930|ref|YP_005841330.1| - 9.7e-06 25.3 0.0 1.7e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family CbiM PF01891.16 gi|385804931|ref|YP_005841331.1| - 4.2e-58 196.6 22.4 4.7e-58 196.4 22.4 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region ECF_trnsprt PF12822.7 gi|385804931|ref|YP_005841331.1| - 0.21 11.7 21.6 0.37 10.9 21.6 1.4 1 0 0 1 1 1 0 ECF transporter, substrate-specific component PDGLE PF13190.6 gi|385804932|ref|YP_005841332.1| - 3.6e-08 33.2 1.1 1e-07 31.7 1.1 1.7 1 1 0 1 1 1 1 PDGLE domain CbiQ PF02361.16 gi|385804933|ref|YP_005841333.1| - 5.3e-31 108.0 13.9 7.9e-31 107.4 13.9 1.2 1 0 0 1 1 1 1 Cobalt transport protein Ni_hydr_CYTB PF01292.20 gi|385804933|ref|YP_005841333.1| - 0.076 12.6 6.0 1 9.0 6.0 2.3 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 ABC_tran PF00005.27 gi|385804934|ref|YP_005841334.1| - 6.2e-28 98.0 0.0 8.4e-28 97.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385804934|ref|YP_005841334.1| - 1.4e-06 28.3 2.9 0.016 15.0 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385804934|ref|YP_005841334.1| - 1.1e-05 25.0 0.1 0.11 12.0 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 gi|385804934|ref|YP_005841334.1| - 0.0011 19.1 0.1 0.015 15.5 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|385804934|ref|YP_005841334.1| - 0.0013 18.5 0.0 0.0035 17.0 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|385804934|ref|YP_005841334.1| - 0.17 11.5 0.1 0.23 11.1 0.1 1.1 1 0 0 1 1 1 0 AAA ATPase domain Urease_beta PF00699.20 gi|385804935|ref|YP_005841335.1| - 5.8e-43 144.9 0.0 7e-43 144.6 0.0 1.1 1 0 0 1 1 1 1 Urease beta subunit Amidohydro_1 PF01979.20 gi|385804936|ref|YP_005841336.1| - 1.6e-68 231.6 0.3 2.1e-68 231.2 0.3 1.1 1 0 0 1 1 1 1 Amidohydrolase family Urease_alpha PF00449.20 gi|385804936|ref|YP_005841336.1| - 3.4e-49 166.2 2.1 7.7e-49 165.0 2.1 1.6 1 0 0 1 1 1 1 Urease alpha-subunit, N-terminal domain Amidohydro_3 PF07969.11 gi|385804936|ref|YP_005841336.1| - 1.1e-09 38.4 1.9 3.3e-06 26.9 0.0 3.3 1 1 2 4 4 4 2 Amidohydrolase family Pyocin_S PF06958.12 gi|385804936|ref|YP_005841336.1| - 0.027 15.0 0.0 0.048 14.2 0.0 1.4 1 0 0 1 1 1 0 S-type Pyocin Urease_gamma PF00547.18 gi|385804937|ref|YP_005841337.1| - 1.1e-42 144.3 0.1 1.3e-42 144.1 0.1 1.0 1 0 0 1 1 1 1 Urease, gamma subunit Svf1_C PF17187.4 gi|385804937|ref|YP_005841337.1| - 0.03 14.2 0.1 0.036 13.9 0.1 1.1 1 0 0 1 1 1 0 Svf1-like C-terminal lipocalin-like domain TFIIB_C_1 PF18542.1 gi|385804937|ref|YP_005841337.1| - 0.044 13.8 0.1 0.057 13.5 0.1 1.2 1 0 0 1 1 1 0 Transcription factor IIB C-terminal module 1 cobW PF02492.19 gi|385804938|ref|YP_005841338.1| - 3.2e-33 114.8 0.0 3.7e-33 114.6 0.0 1.0 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|385804938|ref|YP_005841338.1| - 5.8e-11 41.9 0.6 8e-10 38.1 0.6 2.0 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MobB PF03205.14 gi|385804938|ref|YP_005841338.1| - 0.00019 21.3 0.0 0.00044 20.2 0.0 1.6 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B RsgA_GTPase PF03193.16 gi|385804938|ref|YP_005841338.1| - 0.0048 16.8 0.0 2 8.3 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase AAA_7 PF12775.7 gi|385804938|ref|YP_005841338.1| - 0.0061 16.1 0.0 0.0091 15.5 0.0 1.2 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_18 PF13238.6 gi|385804938|ref|YP_005841338.1| - 0.013 16.1 0.0 0.024 15.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|385804938|ref|YP_005841338.1| - 0.016 15.6 0.0 0.016 15.6 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.15 gi|385804938|ref|YP_005841338.1| - 0.026 14.4 0.0 0.041 13.8 0.0 1.3 1 0 0 1 1 1 0 NTPase ATPase_2 PF01637.18 gi|385804938|ref|YP_005841338.1| - 0.033 14.1 0.0 0.044 13.7 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea SRP54 PF00448.22 gi|385804938|ref|YP_005841338.1| - 0.062 12.9 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NACHT PF05729.12 gi|385804938|ref|YP_005841338.1| - 0.093 12.6 0.0 0.36 10.7 0.1 1.8 2 0 0 2 2 2 0 NACHT domain LpxK PF02606.14 gi|385804938|ref|YP_005841338.1| - 0.1 11.7 0.0 0.29 10.2 0.0 1.6 1 1 1 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_30 PF13604.6 gi|385804938|ref|YP_005841338.1| - 0.1 12.3 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|385804938|ref|YP_005841338.1| - 0.11 12.3 0.0 0.33 10.7 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein TsaE PF02367.17 gi|385804938|ref|YP_005841338.1| - 0.12 12.4 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_PrkA PF08298.11 gi|385804938|ref|YP_005841338.1| - 0.19 10.6 0.0 0.31 9.9 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain UreD PF01774.17 gi|385804939|ref|YP_005841339.1| - 6.1e-40 137.4 0.4 7.3e-40 137.2 0.4 1.1 1 0 0 1 1 1 1 UreD urease accessory protein UreE_N PF02814.15 gi|385804940|ref|YP_005841340.1| - 2.5e-10 39.8 1.8 4.5e-10 39.0 1.8 1.4 1 0 0 1 1 1 1 UreE urease accessory protein, N-terminal domain UreE_C PF05194.12 gi|385804940|ref|YP_005841340.1| - 0.00011 22.6 21.5 0.0031 18.0 21.5 2.5 1 1 0 1 1 1 1 UreE urease accessory protein, C-terminal domain Zip PF02535.22 gi|385804940|ref|YP_005841340.1| - 0.96 8.6 12.3 1.3 8.2 12.3 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter UreF PF01730.16 gi|385804941|ref|YP_005841341.1| - 5e-26 91.8 0.1 6.4e-26 91.5 0.1 1.1 1 0 0 1 1 1 1 UreF AA_permease_2 PF13520.6 gi|385804942|ref|YP_005841342.1| - 1.9e-40 139.0 46.1 2.4e-40 138.7 46.1 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|385804942|ref|YP_005841342.1| - 1.3e-39 136.1 44.6 1.7e-39 135.8 44.6 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|385804942|ref|YP_005841342.1| - 5.2e-08 33.5 0.4 1.9e-07 31.7 0.5 1.9 2 0 0 2 2 2 1 Universal stress protein family TrkA_N PF02254.18 gi|385804943|ref|YP_005841343.1| - 4.4e-13 49.5 0.2 6.8e-13 48.9 0.2 1.2 1 0 0 1 1 1 1 TrkA-N domain LMWPc PF01451.21 gi|385804945|ref|YP_005841345.1| - 3.5e-25 89.0 0.0 4.8e-25 88.6 0.0 1.2 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase MBT PF02820.18 gi|385804945|ref|YP_005841345.1| - 0.077 13.4 0.0 0.13 12.6 0.0 1.4 1 0 0 1 1 1 0 mbt repeat Cons_hypoth698 PF03601.14 gi|385804947|ref|YP_005841347.1| - 1.9e-65 220.7 17.7 2.2e-65 220.5 17.7 1.0 1 0 0 1 1 1 1 Conserved hypothetical protein 698 Metallophos_2 PF12850.7 gi|385804948|ref|YP_005841348.1| - 1.4e-26 93.7 0.8 1.7e-26 93.4 0.8 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|385804948|ref|YP_005841348.1| - 6.5e-05 23.5 0.1 0.33 11.4 0.0 2.3 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase tRNA_lig_kinase PF08303.11 gi|385804948|ref|YP_005841348.1| - 0.04 14.0 0.0 0.054 13.6 0.0 1.1 1 0 0 1 1 1 0 tRNA ligase kinase domain Peptidase_M29 PF02073.15 gi|385804949|ref|YP_005841349.1| - 1.2e-66 225.2 0.1 1.5e-66 224.9 0.1 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) AsnC_trans_reg PF01037.21 gi|385804950|ref|YP_005841350.1| - 1.5e-11 44.0 0.0 2.7e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|385804950|ref|YP_005841350.1| - 8e-10 38.1 0.1 1.8e-09 37.0 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|385804950|ref|YP_005841350.1| - 2.6e-08 33.6 0.3 4.4e-08 32.8 0.3 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.20 gi|385804950|ref|YP_005841350.1| - 5.2e-07 29.4 0.4 1.3e-06 28.2 0.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|385804950|ref|YP_005841350.1| - 1.8e-05 24.6 0.0 3.7e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|385804950|ref|YP_005841350.1| - 5.3e-05 23.2 0.3 0.00011 22.2 0.1 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_10 PF04967.12 gi|385804950|ref|YP_005841350.1| - 0.00011 21.9 0.1 0.00025 20.8 0.0 1.6 2 0 0 2 2 1 1 HTH DNA binding domain GntR PF00392.21 gi|385804950|ref|YP_005841350.1| - 0.00022 20.8 0.2 0.0006 19.4 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.12 gi|385804950|ref|YP_005841350.1| - 0.00043 20.0 0.2 0.0014 18.4 0.1 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain TrmB PF01978.19 gi|385804950|ref|YP_005841350.1| - 0.001 18.9 0.2 0.0027 17.5 0.1 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|385804950|ref|YP_005841350.1| - 0.0016 18.5 0.0 0.0027 17.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|385804950|ref|YP_005841350.1| - 0.0052 16.6 0.1 0.0093 15.7 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_50 PF18024.1 gi|385804950|ref|YP_005841350.1| - 0.0057 16.2 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|385804950|ref|YP_005841350.1| - 0.0075 16.0 0.0 0.016 14.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Mga PF05043.13 gi|385804950|ref|YP_005841350.1| - 0.0078 16.8 0.0 0.022 15.3 0.0 1.7 2 0 0 2 2 2 1 Mga helix-turn-helix domain MarR PF01047.22 gi|385804950|ref|YP_005841350.1| - 0.011 15.6 0.0 0.065 13.2 0.0 2.0 2 0 0 2 2 2 0 MarR family MarR_2 PF12802.7 gi|385804950|ref|YP_005841350.1| - 0.013 15.4 0.1 0.037 13.9 0.0 1.8 2 0 0 2 2 2 0 MarR family HTH_Crp_2 PF13545.6 gi|385804950|ref|YP_005841350.1| - 0.015 15.2 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|385804950|ref|YP_005841350.1| - 0.027 14.7 0.3 0.075 13.2 0.0 1.8 2 1 1 3 3 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Tnp_ISL3 PF13542.6 gi|385804950|ref|YP_005841350.1| - 0.027 13.9 0.0 0.069 12.6 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_1 PF00126.27 gi|385804950|ref|YP_005841350.1| - 0.037 14.0 0.0 0.078 12.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.6 gi|385804950|ref|YP_005841350.1| - 0.1 12.4 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_47 PF16221.5 gi|385804950|ref|YP_005841350.1| - 0.1 12.2 0.0 0.22 11.1 0.0 1.6 1 0 0 1 1 1 0 winged helix-turn-helix HTH_7 PF02796.15 gi|385804950|ref|YP_005841350.1| - 0.14 12.3 0.0 0.44 10.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_29 PF13551.6 gi|385804950|ref|YP_005841350.1| - 0.18 11.8 0.0 0.28 11.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix Gln-synt_C PF00120.24 gi|385804951|ref|YP_005841351.1| - 4.4e-136 453.4 0.0 5.3e-136 453.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|385804951|ref|YP_005841351.1| - 1.2e-31 108.2 0.0 2.4e-31 107.3 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|385804951|ref|YP_005841351.1| - 3.6e-05 23.6 0.0 0.00028 20.7 0.0 2.2 1 1 0 1 1 1 1 Glutamine synthetase N-terminal domain PAP2 PF01569.21 gi|385804952|ref|YP_005841352.1| - 1.2e-11 44.6 14.8 1.2e-11 44.6 14.8 3.5 2 2 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|385804952|ref|YP_005841352.1| - 9.1e-06 25.5 14.8 9.1e-06 25.5 14.8 2.7 2 2 1 3 3 3 1 PAP2 superfamily PAP2_C PF14360.6 gi|385804952|ref|YP_005841352.1| - 0.00027 21.4 2.3 0.00027 21.4 2.3 3.1 3 1 1 4 4 4 1 PAP2 superfamily C-terminal End3 PF12761.7 gi|385804953|ref|YP_005841353.1| - 0.017 15.3 3.4 0.023 14.8 3.4 1.1 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 SKA1 PF07160.12 gi|385804953|ref|YP_005841353.1| - 0.023 14.5 0.2 0.023 14.5 0.2 1.7 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 1 CENP-F_leu_zip PF10473.9 gi|385804953|ref|YP_005841353.1| - 0.088 12.8 0.2 0.13 12.3 0.2 1.2 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FlxA PF14282.6 gi|385804953|ref|YP_005841353.1| - 0.093 12.7 0.1 0.093 12.7 0.1 1.8 2 0 0 2 2 2 0 FlxA-like protein DUF812 PF05667.11 gi|385804953|ref|YP_005841353.1| - 0.14 11.1 4.0 0.16 10.8 4.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF812) BSP_II PF05432.11 gi|385804953|ref|YP_005841353.1| - 0.78 9.4 9.7 0.99 9.0 9.7 1.1 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) Tmemb_cc2 PF10267.9 gi|385804953|ref|YP_005841353.1| - 0.99 8.5 4.6 1.2 8.2 4.6 1.1 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein DUF5345 PF17280.2 gi|385804953|ref|YP_005841353.1| - 9 6.4 5.9 57 3.8 0.0 3.0 3 0 0 3 3 3 0 Family of unknown function (DUF5345) TRM PF02005.16 gi|385804954|ref|YP_005841354.1| - 1.6e-89 300.7 0.0 2.1e-89 300.3 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase PrmA PF06325.13 gi|385804954|ref|YP_005841354.1| - 9.3e-05 21.9 0.0 0.00013 21.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|385804954|ref|YP_005841354.1| - 0.00053 19.6 0.1 0.00089 18.8 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|385804954|ref|YP_005841354.1| - 0.017 15.8 0.0 0.038 14.7 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|385804954|ref|YP_005841354.1| - 0.041 13.7 0.0 0.069 12.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Zn-ribbon_8 PF09723.10 gi|385804954|ref|YP_005841354.1| - 0.042 14.0 2.1 0.089 12.9 2.1 1.6 1 0 0 1 1 1 0 Zinc ribbon domain SWIM PF04434.17 gi|385804955|ref|YP_005841355.1| - 0.2 11.4 4.3 2.8 7.7 4.3 2.2 1 1 0 1 1 1 0 SWIM zinc finger ADH_N PF08240.12 gi|385804956|ref|YP_005841356.1| - 3.6e-29 100.8 0.7 1e-28 99.4 0.7 1.8 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|385804956|ref|YP_005841356.1| - 2.7e-19 69.4 0.1 4.5e-19 68.7 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|385804956|ref|YP_005841356.1| - 6.8e-09 36.9 0.3 1.2e-08 36.1 0.3 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase PQQ_3 PF13570.6 gi|385804957|ref|YP_005841357.1| - 7.7 7.1 11.6 24 5.6 0.0 4.5 4 1 0 4 4 4 0 PQQ-like domain Pribosyltran_N PF13793.6 gi|385804958|ref|YP_005841358.1| - 1.3e-21 76.7 0.0 1.1e-19 70.5 0.0 2.3 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|385804958|ref|YP_005841358.1| - 1.5e-15 57.1 0.8 6.9e-14 51.7 0.2 2.4 2 1 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|385804958|ref|YP_005841358.1| - 4e-07 30.2 2.0 4e-07 30.2 2.0 1.7 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|385804958|ref|YP_005841358.1| - 0.00034 20.1 0.0 0.0006 19.3 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|385804958|ref|YP_005841358.1| - 0.016 14.7 0.5 0.95 8.9 0.3 2.2 1 1 1 2 2 2 0 Phosphoribosyl transferase HIT PF01230.23 gi|385804959|ref|YP_005841359.1| - 2.6e-25 89.0 0.0 3.1e-25 88.7 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|385804959|ref|YP_005841359.1| - 1.2e-12 48.3 0.0 1.5e-12 48.0 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|385804959|ref|YP_005841359.1| - 0.017 15.0 0.0 0.024 14.5 0.0 1.2 1 0 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 AAA_31 PF13614.6 gi|385804960|ref|YP_005841360.1| - 6.8e-08 32.6 0.0 1.2e-07 31.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|385804960|ref|YP_005841360.1| - 1.3e-05 24.6 1.0 0.0069 15.7 0.1 2.2 2 0 0 2 2 2 2 ATPase MipZ CbiA PF01656.23 gi|385804960|ref|YP_005841360.1| - 2.7e-05 24.2 0.0 6.6e-05 23.0 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|385804960|ref|YP_005841360.1| - 0.00026 20.6 3.2 0.003 17.1 3.2 2.0 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|385804960|ref|YP_005841360.1| - 0.0019 17.7 1.3 0.06 12.8 0.6 2.1 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase Peptidase_S66 PF02016.15 gi|385804960|ref|YP_005841360.1| - 0.11 12.6 0.0 0.39 10.8 0.0 1.9 2 0 0 2 2 2 0 LD-carboxypeptidase N-terminal domain TFIIB PF00382.19 gi|385804962|ref|YP_005841362.1| - 4.8e-34 116.2 0.4 2.2e-17 62.9 0.3 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|385804962|ref|YP_005841362.1| - 3.8e-11 42.3 2.5 6.1e-11 41.6 2.5 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding RB_B PF01857.20 gi|385804962|ref|YP_005841362.1| - 0.00091 19.3 0.0 0.0016 18.5 0.0 1.3 1 0 0 1 1 1 1 Retinoblastoma-associated protein B domain zf-ribbon_3 PF13248.6 gi|385804962|ref|YP_005841362.1| - 0.023 14.1 2.7 0.053 13.0 2.7 1.6 1 0 0 1 1 1 0 zinc-ribbon domain Cyclin_C PF02984.19 gi|385804962|ref|YP_005841362.1| - 0.034 14.2 0.1 0.23 11.5 0.0 2.1 2 0 0 2 2 2 0 Cyclin, C-terminal domain ParA PF10609.9 gi|385804964|ref|YP_005841364.1| - 9.4e-13 48.2 3.6 2.8e-10 40.1 3.6 2.9 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|385804964|ref|YP_005841364.1| - 4.1e-10 39.8 0.0 7e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|385804964|ref|YP_005841364.1| - 5e-09 36.3 0.0 8.6e-09 35.5 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|385804964|ref|YP_005841364.1| - 0.00028 20.5 0.1 0.00079 19.0 0.1 1.7 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|385804964|ref|YP_005841364.1| - 0.001 18.4 0.9 0.0093 15.3 0.9 2.0 1 1 0 1 1 1 1 ATPase MipZ AAA_33 PF13671.6 gi|385804964|ref|YP_005841364.1| - 0.0012 19.0 0.0 0.0021 18.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|385804964|ref|YP_005841364.1| - 0.0023 17.4 0.3 0.62 9.5 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.6 gi|385804964|ref|YP_005841364.1| - 0.068 13.0 1.5 0.25 11.1 0.1 2.2 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|385804964|ref|YP_005841364.1| - 0.073 12.8 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|385804964|ref|YP_005841364.1| - 0.084 12.4 2.2 0.14 11.7 0.8 2.0 2 0 0 2 2 2 0 AAA domain ArsA_ATPase PF02374.15 gi|385804964|ref|YP_005841364.1| - 0.11 11.6 0.4 0.22 10.7 0.4 1.5 1 0 0 1 1 1 0 Anion-transporting ATPase FliD_N PF02465.18 gi|385804965|ref|YP_005841365.1| - 0.0061 17.2 2.0 0.023 15.4 2.0 1.9 1 0 0 1 1 1 1 Flagellar hook-associated protein 2 N-terminus Mitofilin PF09731.9 gi|385804965|ref|YP_005841365.1| - 0.024 13.5 1.9 0.026 13.4 1.9 1.1 1 0 0 1 1 1 0 Mitochondrial inner membrane protein SidE PF12252.8 gi|385804966|ref|YP_005841366.1| - 0.017 12.7 0.6 0.024 12.2 0.6 1.1 1 0 0 1 1 1 0 Dot/Icm substrate protein HTH_25 PF13413.6 gi|385804968|ref|YP_005841368.1| - 0.033 14.1 0.0 0.27 11.1 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain bact-PGI_C PF10432.9 gi|385804968|ref|YP_005841368.1| - 0.13 12.3 0.1 0.17 12.0 0.1 1.2 1 0 0 1 1 1 0 Bacterial phospho-glucose isomerase C-terminal SIS domain Big_7 PF17957.1 gi|385804969|ref|YP_005841369.1| - 0.00093 19.9 0.5 0.028 15.2 0.1 6.3 5 3 1 6 6 6 3 Bacterial Ig domain PGF-CTERM PF18204.1 gi|385804969|ref|YP_005841369.1| - 0.065 13.2 2.2 0.12 12.4 2.2 1.4 1 0 0 1 1 1 0 PGF-CTERM motif PepSY PF03413.19 gi|385804969|ref|YP_005841369.1| - 0.089 13.4 1.3 0.36 11.4 0.2 2.6 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain Cadherin-like PF12733.7 gi|385804969|ref|YP_005841369.1| - 0.23 12.0 32.3 0.64 10.6 3.5 5.4 4 1 0 4 4 4 0 Cadherin-like beta sandwich domain CE2_N PF17996.1 gi|385804969|ref|YP_005841369.1| - 0.35 10.9 3.5 1 9.4 0.1 3.3 3 0 0 3 3 3 0 Carbohydrate esterase 2 N-terminal CopC PF04234.12 gi|385804969|ref|YP_005841369.1| - 2.1 9.4 7.9 0.29 12.2 0.3 3.1 3 1 1 4 4 4 0 CopC domain Intein_splicing PF14890.6 gi|385804970|ref|YP_005841370.1| - 6.7e-69 230.0 1.0 6.2e-20 71.5 0.0 4.5 4 0 0 4 4 4 4 Intein splicing domain MCM PF00493.23 gi|385804970|ref|YP_005841370.1| - 3.3e-66 222.6 3.6 1.1e-26 93.4 0.0 5.3 5 0 0 5 5 5 4 MCM P-loop domain MCM_OB PF17207.3 gi|385804970|ref|YP_005841370.1| - 7.6e-34 116.3 0.2 1.7e-33 115.2 0.2 1.6 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|385804970|ref|YP_005841370.1| - 2.2e-27 95.3 0.2 1.1e-26 93.0 0.2 2.3 1 0 0 1 1 1 1 MCM AAA-lid domain LAGLIDADG_3 PF14528.6 gi|385804970|ref|YP_005841370.1| - 4.4e-15 55.8 0.0 5e-11 42.8 0.0 2.7 2 0 0 2 2 2 2 LAGLIDADG-like domain Hint PF01079.20 gi|385804970|ref|YP_005841370.1| - 9e-08 31.9 0.2 0.0033 17.0 0.0 3.9 4 0 0 4 4 4 2 Hint module MCM_N PF14551.6 gi|385804970|ref|YP_005841370.1| - 6.4e-06 26.7 2.4 3.7e-05 24.3 2.4 2.3 1 0 0 1 1 1 1 MCM N-terminal domain Hom_end PF05204.14 gi|385804970|ref|YP_005841370.1| - 0.0038 17.4 5.9 0.36 11.0 0.1 3.5 4 0 0 4 4 4 2 Homing endonuclease HTH_26 PF13443.6 gi|385804970|ref|YP_005841370.1| - 0.073 13.5 0.0 0.25 11.8 0.0 1.9 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain NUMOD1 PF07453.13 gi|385804970|ref|YP_005841370.1| - 0.38 11.1 1.1 0.82 10.0 0.1 2.3 2 0 0 2 2 2 0 NUMOD1 domain BioY PF02632.14 gi|385804972|ref|YP_005841372.1| - 1.9e-34 118.6 16.8 3.3e-34 117.8 16.8 1.3 1 0 0 1 1 1 1 BioY family MerE PF05052.12 gi|385804972|ref|YP_005841372.1| - 0.18 11.7 5.6 0.072 13.0 1.1 2.6 1 1 0 2 2 2 0 MerE protein ABC_tran PF00005.27 gi|385804973|ref|YP_005841373.1| - 5.5e-29 101.4 0.0 1.2e-28 100.3 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|385804973|ref|YP_005841373.1| - 9.3e-09 35.5 0.3 0.001 19.0 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385804973|ref|YP_005841373.1| - 2.9e-07 30.2 0.0 3e-06 26.8 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|385804973|ref|YP_005841373.1| - 5.1e-05 23.7 0.1 7e-05 23.3 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|385804973|ref|YP_005841373.1| - 0.0006 19.5 0.1 0.0012 18.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|385804973|ref|YP_005841373.1| - 0.003 17.8 0.0 0.0055 17.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|385804973|ref|YP_005841373.1| - 0.0031 18.1 0.1 0.0044 17.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|385804973|ref|YP_005841373.1| - 0.0091 16.2 0.3 0.15 12.3 0.3 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 gi|385804973|ref|YP_005841373.1| - 0.012 15.6 0.0 0.021 14.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_15 PF13175.6 gi|385804973|ref|YP_005841373.1| - 0.017 14.8 0.0 0.029 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_13 PF13166.6 gi|385804973|ref|YP_005841373.1| - 0.025 13.2 0.1 0.046 12.4 0.1 1.4 1 1 0 1 1 1 0 AAA domain Etmic-2 PF06670.11 gi|385804973|ref|YP_005841373.1| - 0.026 13.5 0.1 0.043 12.8 0.1 1.3 1 0 0 1 1 1 0 Microneme protein Etmic-2 AAA_5 PF07728.14 gi|385804973|ref|YP_005841373.1| - 0.037 14.0 0.0 0.11 12.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|385804973|ref|YP_005841373.1| - 0.046 13.4 0.0 0.071 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|385804973|ref|YP_005841373.1| - 0.05 13.8 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|385804973|ref|YP_005841373.1| - 0.055 13.4 0.0 0.097 12.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 gi|385804973|ref|YP_005841373.1| - 0.056 13.7 0.1 0.086 13.1 0.1 1.6 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|385804973|ref|YP_005841373.1| - 0.066 12.6 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_24 PF13479.6 gi|385804973|ref|YP_005841373.1| - 0.073 12.8 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|385804973|ref|YP_005841373.1| - 0.081 11.7 0.0 0.11 11.3 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) cobW PF02492.19 gi|385804973|ref|YP_005841373.1| - 0.089 12.4 0.3 0.18 11.4 0.1 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ATPase PF06745.13 gi|385804973|ref|YP_005841373.1| - 0.1 11.9 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 KaiC NB-ARC PF00931.22 gi|385804973|ref|YP_005841373.1| - 0.15 11.2 0.0 0.26 10.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain PduV-EutP PF10662.9 gi|385804973|ref|YP_005841373.1| - 0.18 11.5 0.0 0.5 10.1 0.0 1.7 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation DUF3584 PF12128.8 gi|385804973|ref|YP_005841373.1| - 0.19 9.2 0.0 0.27 8.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) G-alpha PF00503.20 gi|385804973|ref|YP_005841373.1| - 0.27 10.3 0.0 0.38 9.9 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit CbiQ PF02361.16 gi|385804974|ref|YP_005841374.1| - 2e-15 57.0 9.7 2e-15 57.0 9.7 1.4 2 0 0 2 2 2 1 Cobalt transport protein Fer4 PF00037.27 gi|385804975|ref|YP_005841375.1| - 1.4e-12 46.9 12.5 9e-07 28.5 3.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|385804975|ref|YP_005841375.1| - 1.5e-12 47.9 20.4 1.1e-07 32.3 6.3 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|385804975|ref|YP_005841375.1| - 2.2e-08 33.8 14.8 0.00011 22.1 5.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|385804975|ref|YP_005841375.1| - 5.3e-08 32.9 4.5 8.5e-08 32.2 4.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|385804975|ref|YP_005841375.1| - 5.1e-07 29.7 17.8 8.3e-06 25.8 7.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|385804975|ref|YP_005841375.1| - 1.1e-06 28.6 10.3 3.7e-06 27.0 10.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|385804975|ref|YP_005841375.1| - 2.1e-06 28.6 4.5 0.00091 20.1 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|385804975|ref|YP_005841375.1| - 3e-06 27.3 5.9 0.00031 21.0 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|385804975|ref|YP_005841375.1| - 3.7e-05 23.5 10.0 0.042 14.0 2.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|385804975|ref|YP_005841375.1| - 0.0001 23.0 10.3 0.0058 17.5 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|385804975|ref|YP_005841375.1| - 0.0002 21.8 2.2 0.17 12.4 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|385804975|ref|YP_005841375.1| - 0.00033 21.0 5.9 0.0016 18.8 6.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|385804975|ref|YP_005841375.1| - 0.0016 18.9 14.7 0.083 13.4 14.7 2.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|385804975|ref|YP_005841375.1| - 0.0036 17.5 9.6 0.004 17.3 3.3 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|385804975|ref|YP_005841375.1| - 0.044 13.9 0.2 0.05 13.8 0.2 1.1 1 0 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_15 PF13459.6 gi|385804975|ref|YP_005841375.1| - 1.6 9.6 15.3 1.2e+02 3.5 15.2 2.8 1 1 0 1 1 1 0 4Fe-4S single cluster domain GATase PF00117.28 gi|385804976|ref|YP_005841376.1| - 6.2e-24 84.8 0.0 8.5e-24 84.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|385804976|ref|YP_005841376.1| - 9.2e-11 41.9 0.0 3.3e-10 40.1 0.0 2.0 1 1 0 1 1 1 1 Peptidase C26 HTS PF04204.16 gi|385804976|ref|YP_005841376.1| - 0.00057 18.9 0.0 0.0012 17.9 0.0 1.5 1 1 0 1 1 1 1 Homoserine O-succinyltransferase DJ-1_PfpI PF01965.24 gi|385804976|ref|YP_005841376.1| - 0.057 13.2 0.0 0.25 11.1 0.0 1.9 2 0 0 2 2 2 0 DJ-1/PfpI family Abhydrolase_1 PF00561.20 gi|385804977|ref|YP_005841377.1| - 7.8e-16 58.5 0.3 8.6e-14 51.8 0.3 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|385804977|ref|YP_005841377.1| - 9e-15 55.9 5.8 1e-14 55.7 5.8 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|385804977|ref|YP_005841377.1| - 3.6e-13 49.3 0.0 4.6e-13 49.0 0.0 1.1 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|385804977|ref|YP_005841377.1| - 0.0047 17.0 0.0 0.0075 16.4 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein Peptidase_S15 PF02129.18 gi|385804977|ref|YP_005841377.1| - 0.0097 15.5 0.4 1.8 8.1 0.0 2.1 2 0 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) tRNA-synt_2c PF01411.19 gi|385804978|ref|YP_005841378.1| - 1.2e-110 370.7 0.0 1.6e-110 370.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|385804978|ref|YP_005841378.1| - 3.2e-20 72.9 2.0 6.4e-20 72.0 2.0 1.5 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|385804978|ref|YP_005841378.1| - 6.8e-13 48.5 1.7 1.5e-12 47.4 1.7 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain UL42 PF17638.2 gi|385804978|ref|YP_005841378.1| - 0.085 12.8 0.2 0.16 11.9 0.2 1.4 1 0 0 1 1 1 0 HCMV UL42 RXLR PF16810.5 gi|385804978|ref|YP_005841378.1| - 0.099 13.1 0.0 0.27 11.7 0.0 1.7 1 0 0 1 1 1 0 RXLR phytopathogen effector protein, Avirulence activity ActA PF05058.12 gi|385804978|ref|YP_005841378.1| - 0.19 10.1 0.2 0.3 9.4 0.2 1.2 1 0 0 1 1 1 0 ActA Protein Rep_fac_C PF08542.11 gi|385804979|ref|YP_005841379.1| - 1.3e-21 76.8 0.0 2.9e-21 75.7 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.6 gi|385804979|ref|YP_005841379.1| - 6.3e-14 52.1 0.0 4.9e-12 45.9 0.0 2.7 2 1 0 2 2 2 1 DNA polymerase III, delta subunit Intein_splicing PF14890.6 gi|385804979|ref|YP_005841379.1| - 5.4e-11 42.6 0.0 1e-10 41.7 0.0 1.5 1 0 0 1 1 1 1 Intein splicing domain AAA PF00004.29 gi|385804979|ref|YP_005841379.1| - 1.9e-09 38.1 3.6 1.7e-08 35.0 0.0 3.2 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta PF06144.13 gi|385804979|ref|YP_005841379.1| - 2.6e-06 27.3 0.0 6.3e-06 26.1 0.0 1.6 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_assoc_2 PF16193.5 gi|385804979|ref|YP_005841379.1| - 4.2e-06 27.0 0.5 1.9e-05 24.9 0.2 2.3 2 1 0 2 2 2 1 AAA C-terminal domain AAA_16 PF13191.6 gi|385804979|ref|YP_005841379.1| - 0.00012 22.5 1.0 0.36 11.2 0.0 3.0 3 0 0 3 3 3 2 AAA ATPase domain RuvB_N PF05496.12 gi|385804979|ref|YP_005841379.1| - 0.0025 17.6 0.1 0.13 12.0 0.0 3.1 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain Rad17 PF03215.15 gi|385804979|ref|YP_005841379.1| - 0.019 14.9 0.0 0.037 14.0 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_22 PF13401.6 gi|385804979|ref|YP_005841379.1| - 0.095 13.0 0.2 2 8.7 0.0 2.9 3 0 0 3 3 3 0 AAA domain Acetyltransf_7 PF13508.7 gi|385804980|ref|YP_005841380.1| - 5.7e-07 29.9 0.0 9.1e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|385804980|ref|YP_005841380.1| - 0.00039 20.4 0.0 0.0011 18.9 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|385804980|ref|YP_005841380.1| - 0.00082 19.6 0.0 0.0011 19.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Init_tRNA_PT PF04179.12 gi|385804980|ref|YP_005841380.1| - 0.14 12.5 0.0 0.2 12.0 0.0 1.3 1 0 0 1 1 1 0 Rit1 DUSP-like domain PGM_PMM_I PF02878.16 gi|385804981|ref|YP_005841381.1| - 2.2e-37 127.8 0.0 4e-37 127.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|385804981|ref|YP_005841381.1| - 1.6e-26 92.9 0.2 5.8e-26 91.1 0.1 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|385804981|ref|YP_005841381.1| - 3.1e-24 85.4 0.1 6.2e-24 84.4 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|385804981|ref|YP_005841381.1| - 1.4e-13 50.8 0.0 4.4e-13 49.2 0.0 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain GIY-YIG PF01541.24 gi|385804982|ref|YP_005841382.1| - 4e-18 65.5 1.5 4.7e-18 65.3 1.5 1.1 1 0 0 1 1 1 1 GIY-YIG catalytic domain T5orf172 PF10544.9 gi|385804982|ref|YP_005841382.1| - 0.0071 16.9 0.5 0.01 16.4 0.5 1.3 1 1 0 1 1 1 1 T5orf172 domain PWWP PF00855.17 gi|385804982|ref|YP_005841382.1| - 0.034 14.6 0.0 0.037 14.4 0.0 1.1 1 0 0 1 1 1 0 PWWP domain SurE PF01975.17 gi|385804983|ref|YP_005841383.1| - 2.3e-43 148.2 0.0 3e-43 147.9 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE Lar_restr_allev PF14354.6 gi|385804984|ref|YP_005841384.1| - 0.00044 20.6 0.5 0.00045 20.5 0.5 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-RING_7 PF02591.15 gi|385804984|ref|YP_005841384.1| - 0.0018 18.4 1.3 0.26 11.5 0.0 2.2 2 0 0 2 2 2 1 C4-type zinc ribbon domain DUF3268 PF11672.8 gi|385804984|ref|YP_005841384.1| - 0.0023 18.2 0.1 0.0025 18.1 0.1 1.0 1 0 0 1 1 1 1 zinc-finger-containing domain PhnA_Zn_Ribbon PF08274.12 gi|385804984|ref|YP_005841384.1| - 0.0043 17.0 0.5 0.012 15.6 0.5 1.7 1 1 0 1 1 1 1 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.6 gi|385804984|ref|YP_005841384.1| - 0.0075 15.6 2.8 0.43 10.0 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain C1_1 PF00130.22 gi|385804984|ref|YP_005841384.1| - 0.0094 15.8 0.3 0.012 15.4 0.3 1.2 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) OrfB_Zn_ribbon PF07282.11 gi|385804984|ref|YP_005841384.1| - 0.021 14.7 0.6 0.028 14.3 0.6 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|385804984|ref|YP_005841384.1| - 0.021 14.8 0.9 0.032 14.3 0.9 1.3 1 1 0 1 1 1 0 Double zinc ribbon ATPase-cat_bd PF12156.8 gi|385804984|ref|YP_005841384.1| - 0.021 15.5 0.7 0.023 15.4 0.7 1.1 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase Nudix_N_2 PF14803.6 gi|385804984|ref|YP_005841384.1| - 0.032 14.1 0.2 0.073 13.0 0.2 1.5 1 1 0 1 1 1 0 Nudix N-terminal zf_UBZ PF18439.1 gi|385804984|ref|YP_005841384.1| - 0.07 12.7 0.4 3.3 7.4 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 gi|385804984|ref|YP_005841384.1| - 0.082 13.0 3.1 0.23 11.6 2.8 1.8 1 1 0 1 1 1 0 Zinc ribbon domain DUF1610 PF07754.11 gi|385804984|ref|YP_005841384.1| - 0.11 12.4 0.2 0.11 12.4 0.2 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) Zn_Tnp_IS1595 PF12760.7 gi|385804984|ref|YP_005841384.1| - 0.2 11.7 2.7 1.2 9.2 2.5 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|385804984|ref|YP_005841384.1| - 0.41 10.6 2.8 1.2 9.1 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Prim_Zn_Ribbon PF08273.12 gi|385804984|ref|YP_005841384.1| - 0.91 9.9 5.1 28 5.1 5.1 2.1 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-RRN7 PF11781.8 gi|385804984|ref|YP_005841384.1| - 4.2 7.1 6.5 3.3 7.5 0.5 2.3 1 1 1 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF1931 PF09123.11 gi|385804985|ref|YP_005841385.1| - 0.00021 21.4 0.6 0.00023 21.3 0.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) CBFD_NFYB_HMF PF00808.23 gi|385804985|ref|YP_005841385.1| - 0.004 17.4 0.1 0.007 16.6 0.1 1.6 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|385804985|ref|YP_005841385.1| - 0.017 15.5 0.1 0.023 15.1 0.0 1.2 1 1 0 1 1 1 0 Core histone H2A/H2B/H3/H4 Rib_5-P_isom_A PF06026.14 gi|385804986|ref|YP_005841386.1| - 3.8e-61 205.7 0.2 4.9e-61 205.3 0.2 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|385804986|ref|YP_005841386.1| - 1.6e-07 31.4 0.4 3.8e-05 23.7 0.1 2.4 2 0 0 2 2 2 2 DeoR C terminal sensor domain BAT2_N PF07001.11 gi|385804986|ref|YP_005841386.1| - 0.18 12.2 0.0 0.32 11.4 0.0 1.3 1 0 0 1 1 1 0 BAT2 N-terminus AAA_16 PF13191.6 gi|385804987|ref|YP_005841387.1| - 8.7e-14 52.3 0.7 1e-10 42.3 0.0 2.9 2 1 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|385804987|ref|YP_005841387.1| - 2.5e-11 44.0 0.0 5.1e-11 43.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|385804987|ref|YP_005841387.1| - 2.9e-06 27.7 0.0 7.1e-06 26.5 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdc6_C PF09079.11 gi|385804987|ref|YP_005841387.1| - 6.2e-05 22.9 0.0 0.00053 19.9 0.0 2.4 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain NACHT PF05729.12 gi|385804987|ref|YP_005841387.1| - 0.0004 20.3 0.0 0.00062 19.7 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_11 PF13086.6 gi|385804987|ref|YP_005841387.1| - 0.00049 20.0 0.0 0.00073 19.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_35 PF14516.6 gi|385804987|ref|YP_005841387.1| - 0.0008 18.3 0.0 0.052 12.4 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_6 PF12774.7 gi|385804987|ref|YP_005841387.1| - 0.0011 18.1 0.0 0.0021 17.1 0.0 1.5 1 0 0 1 1 1 1 Hydrolytic ATP binding site of dynein motor region AAA_33 PF13671.6 gi|385804987|ref|YP_005841387.1| - 0.0012 19.0 0.0 0.0024 18.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|385804987|ref|YP_005841387.1| - 0.0015 18.3 0.2 0.0048 16.6 0.1 1.8 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|385804987|ref|YP_005841387.1| - 0.0042 16.6 0.0 0.017 14.6 0.0 1.8 2 0 0 2 2 2 1 P-loop containing dynein motor region Rad17 PF03215.15 gi|385804987|ref|YP_005841387.1| - 0.0051 16.8 0.0 0.0092 15.9 0.0 1.5 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|385804987|ref|YP_005841387.1| - 0.0057 16.7 0.1 0.045 13.8 0.1 2.1 1 1 0 1 1 1 1 AAA domain TIP49_C PF17856.1 gi|385804987|ref|YP_005841387.1| - 0.0062 16.7 0.0 0.015 15.4 0.0 1.6 1 0 0 1 1 1 1 TIP49 AAA-lid domain ATPase_2 PF01637.18 gi|385804987|ref|YP_005841387.1| - 0.0069 16.3 0.0 0.075 12.9 0.0 2.1 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea NTPase_1 PF03266.15 gi|385804987|ref|YP_005841387.1| - 0.009 15.9 0.2 0.02 14.8 0.2 1.6 1 0 0 1 1 1 1 NTPase RNA_helicase PF00910.22 gi|385804987|ref|YP_005841387.1| - 0.012 16.0 0.0 0.023 15.1 0.0 1.4 1 0 0 1 1 1 0 RNA helicase PGM_PMM_II PF02879.16 gi|385804987|ref|YP_005841387.1| - 0.015 15.9 0.0 8.5 7.1 0.0 2.9 3 0 0 3 3 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IstB_IS21 PF01695.17 gi|385804987|ref|YP_005841387.1| - 0.023 14.4 0.5 0.19 11.5 0.5 2.1 1 1 0 1 1 1 0 IstB-like ATP binding protein AAA_24 PF13479.6 gi|385804987|ref|YP_005841387.1| - 0.025 14.3 0.0 0.041 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|385804987|ref|YP_005841387.1| - 0.025 14.3 0.0 0.057 13.2 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|385804987|ref|YP_005841387.1| - 0.026 14.8 0.1 0.053 13.8 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|385804987|ref|YP_005841387.1| - 0.026 14.8 0.1 0.056 13.8 0.1 1.5 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|385804987|ref|YP_005841387.1| - 0.031 13.4 0.0 0.053 12.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Viral_helicase1 PF01443.18 gi|385804987|ref|YP_005841387.1| - 0.048 13.4 0.0 0.077 12.7 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Sigma54_activat PF00158.26 gi|385804987|ref|YP_005841387.1| - 0.049 13.3 0.0 0.09 12.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_32 PF13654.6 gi|385804987|ref|YP_005841387.1| - 0.05 12.4 0.2 12 4.6 0.0 2.7 3 0 0 3 3 3 0 AAA domain AAA_18 PF13238.6 gi|385804987|ref|YP_005841387.1| - 0.052 14.1 0.1 0.13 12.8 0.1 1.9 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|385804987|ref|YP_005841387.1| - 0.055 12.7 0.0 0.1 11.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_5 PF07728.14 gi|385804987|ref|YP_005841387.1| - 0.058 13.4 0.3 0.18 11.8 0.1 2.1 2 1 0 2 2 1 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.12 gi|385804987|ref|YP_005841387.1| - 0.1 11.8 0.1 0.23 10.7 0.0 1.7 1 1 0 1 1 1 0 Zeta toxin DUF815 PF05673.13 gi|385804987|ref|YP_005841387.1| - 0.12 11.5 0.0 0.61 9.2 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) CbiA PF01656.23 gi|385804987|ref|YP_005841387.1| - 0.13 12.3 0.0 0.19 11.8 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|385804987|ref|YP_005841387.1| - 0.19 11.3 0.1 0.41 10.2 0.1 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MutS_V PF00488.21 gi|385804988|ref|YP_005841388.1| - 1.5e-08 34.9 0.0 3.2e-08 33.8 0.0 1.5 1 0 0 1 1 1 1 MutS domain V HHH_5 PF14520.6 gi|385804988|ref|YP_005841388.1| - 0.00027 21.5 1.5 0.0062 17.1 0.2 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix domain IMS_HHH PF11798.8 gi|385804988|ref|YP_005841388.1| - 0.0067 16.7 0.0 0.045 14.1 0.0 2.3 2 0 0 2 2 2 1 IMS family HHH motif HHH PF00633.23 gi|385804988|ref|YP_005841388.1| - 0.013 15.3 0.0 0.043 13.7 0.0 2.0 1 0 0 1 1 1 0 Helix-hairpin-helix motif AAA PF00004.29 gi|385804988|ref|YP_005841388.1| - 0.024 15.1 0.7 0.25 11.8 0.0 2.9 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|385804988|ref|YP_005841388.1| - 0.11 12.2 0.7 0.21 11.4 0.1 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|385804988|ref|YP_005841388.1| - 0.15 11.8 0.7 13 5.4 0.3 2.5 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system NAD_synthase PF02540.17 gi|385804989|ref|YP_005841389.1| - 1.1e-07 31.3 0.0 2.4e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.21 gi|385804989|ref|YP_005841389.1| - 8.5e-07 29.0 0.1 1.3e-06 28.4 0.1 1.3 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|385804989|ref|YP_005841389.1| - 8.9e-07 28.0 0.0 3.1e-05 22.9 0.0 2.2 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.13 gi|385804989|ref|YP_005841389.1| - 9.1e-05 22.0 0.0 0.00042 19.9 0.0 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|385804989|ref|YP_005841389.1| - 0.0021 17.8 0.0 0.0044 16.8 0.0 1.5 1 0 0 1 1 1 1 PP-loop family QueH PF02677.14 gi|385804989|ref|YP_005841389.1| - 0.0067 16.6 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 Epoxyqueuosine reductase QueH FTR_C PF02741.15 gi|385804989|ref|YP_005841389.1| - 0.052 13.6 2.0 0.074 13.1 0.2 2.1 3 0 0 3 3 3 0 FTR, proximal lobe Arginosuc_synth PF00764.19 gi|385804989|ref|YP_005841389.1| - 0.1 11.9 0.1 0.21 10.8 0.0 1.5 1 1 0 1 1 1 0 Arginosuccinate synthase CAF20 PF17052.5 gi|385804989|ref|YP_005841389.1| - 0.22 11.7 0.2 0.22 11.7 0.2 1.8 2 0 0 2 2 2 0 Cap associated factor TatC PF00902.18 gi|385804990|ref|YP_005841390.1| - 1.1e-34 120.0 14.3 1.5e-34 119.6 14.3 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) Apt1 PF10351.9 gi|385804990|ref|YP_005841390.1| - 3.1 6.5 10.8 4.5 6.0 10.8 1.2 1 0 0 1 1 1 0 Golgi-body localisation protein domain AF-4 PF05110.13 gi|385804990|ref|YP_005841390.1| - 4.1 5.4 26.5 5.5 5.0 26.5 1.1 1 0 0 1 1 1 0 AF-4 proto-oncoprotein TatC PF00902.18 gi|385804991|ref|YP_005841391.1| - 2.5e-69 233.2 42.4 1e-39 136.5 18.9 2.3 2 0 0 2 2 2 2 Sec-independent protein translocase protein (TatC) HCV_env PF01539.17 gi|385804991|ref|YP_005841391.1| - 1.4 8.6 5.9 14 5.3 1.9 2.9 2 1 0 2 2 2 0 Hepatitis C virus envelope glycoprotein E1 FtsJ PF01728.19 gi|385804992|ref|YP_005841392.1| - 1.7e-53 181.4 0.0 2.2e-53 181.0 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.20 gi|385804992|ref|YP_005841392.1| - 1.7e-09 37.6 0.5 3e-09 36.7 0.5 1.5 1 0 0 1 1 1 1 TRAM domain Methyltransf_31 PF13847.6 gi|385804992|ref|YP_005841392.1| - 8.9e-05 22.3 0.1 0.00035 20.4 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|385804992|ref|YP_005841392.1| - 0.012 16.3 0.2 0.055 14.2 0.2 2.1 1 1 0 1 1 1 0 Methyltransferase domain CDC48_N PF02359.18 gi|385804992|ref|YP_005841392.1| - 0.017 15.3 0.0 0.039 14.1 0.0 1.6 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Methyltransf_23 PF13489.6 gi|385804992|ref|YP_005841392.1| - 0.037 13.9 0.0 0.09 12.6 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|385804992|ref|YP_005841392.1| - 0.082 12.5 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Fibrillarin PF01269.17 gi|385804992|ref|YP_005841392.1| - 0.16 11.1 0.0 0.23 10.5 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin PCNA_C PF02747.15 gi|385804993|ref|YP_005841393.1| - 1e-08 35.4 0.0 7.2e-08 32.7 0.0 2.1 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain PCNA_N PF00705.18 gi|385804993|ref|YP_005841393.1| - 2.2e-08 33.8 1.1 7.7e-08 32.1 0.4 2.0 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain DNA_pol3_beta_3 PF02768.15 gi|385804993|ref|YP_005841393.1| - 0.031 14.1 0.5 0.18 11.7 0.1 2.1 2 1 0 2 2 2 0 DNA polymerase III beta subunit, C-terminal domain Porin_O_P PF07396.11 gi|385804993|ref|YP_005841393.1| - 0.16 11.1 0.0 0.21 10.7 0.0 1.2 1 0 0 1 1 1 0 Phosphate-selective porin O and P DNA_primase_lrg PF04104.14 gi|385804995|ref|YP_005841395.1| - 7.9e-18 64.8 0.0 1.6e-17 63.8 0.0 1.5 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit DUF2830 PF11125.8 gi|385804996|ref|YP_005841396.1| - 0.1 12.6 0.3 0.16 12.0 0.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2830) DUF3197 PF11432.8 gi|385804996|ref|YP_005841396.1| - 0.11 12.4 0.2 0.12 12.2 0.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3197) DUF2721 PF11026.8 gi|385804996|ref|YP_005841396.1| - 0.14 12.0 2.9 0.15 11.9 2.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) PsbN PF02468.15 gi|385804996|ref|YP_005841396.1| - 0.57 10.1 3.6 7 6.6 0.7 2.1 2 0 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) ETRAMP PF09716.10 gi|385804996|ref|YP_005841396.1| - 7.2 6.7 6.6 6.8 6.8 0.0 2.0 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) Hjc PF01870.18 gi|385804997|ref|YP_005841397.1| - 1.3e-30 105.2 0.0 1.6e-30 104.9 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) FKBP_C PF00254.28 gi|385804998|ref|YP_005841398.1| - 1.2e-19 70.5 0.0 1.8e-19 69.8 0.0 1.4 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase UvrC_HhH_N PF08459.11 gi|385805000|ref|YP_005841400.1| - 1.4e-39 135.5 0.0 2.7e-39 134.6 0.0 1.5 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH_5 PF14520.6 gi|385805000|ref|YP_005841400.1| - 1.7e-10 41.4 0.0 4.8e-10 39.9 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|385805000|ref|YP_005841400.1| - 5.7e-10 38.5 0.0 6.3e-06 25.8 0.0 3.2 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|385805000|ref|YP_005841400.1| - 3.8e-09 36.5 0.0 1e-08 35.1 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif UVR PF02151.19 gi|385805000|ref|YP_005841400.1| - 5.6e-09 35.5 4.5 3.8e-08 32.8 1.5 2.9 2 0 0 2 2 2 1 UvrB/uvrC motif GIY-YIG PF01541.24 gi|385805000|ref|YP_005841400.1| - 1.8e-05 24.9 0.0 3.9e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 GIY-YIG catalytic domain 5_3_exonuc PF01367.20 gi|385805000|ref|YP_005841400.1| - 0.001 19.6 0.1 0.05 14.2 0.0 2.8 2 1 1 3 3 3 1 5'-3' exonuclease, C-terminal SAM fold IMS_HHH PF11798.8 gi|385805000|ref|YP_005841400.1| - 0.03 14.6 0.0 5 7.7 0.0 2.6 2 0 0 2 2 2 0 IMS family HHH motif HHH_8 PF14716.6 gi|385805000|ref|YP_005841400.1| - 0.058 13.8 0.1 4.4 7.7 0.0 3.1 3 0 0 3 3 3 0 Helix-hairpin-helix domain ABC_tran PF00005.27 gi|385805001|ref|YP_005841401.1| - 1.5e-26 93.5 0.0 2.9e-26 92.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385805001|ref|YP_005841401.1| - 1.7e-11 44.5 0.0 5.7e-08 32.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|385805001|ref|YP_005841401.1| - 1.9e-06 28.5 0.1 4.2e-06 27.4 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) RsgA_GTPase PF03193.16 gi|385805001|ref|YP_005841401.1| - 0.0044 17.0 0.0 0.011 15.6 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 gi|385805001|ref|YP_005841401.1| - 0.016 14.9 0.5 0.063 13.0 0.5 2.0 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|385805001|ref|YP_005841401.1| - 0.023 15.2 0.8 0.046 14.2 0.2 1.7 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|385805001|ref|YP_005841401.1| - 0.038 13.7 0.1 0.082 12.7 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|385805001|ref|YP_005841401.1| - 0.042 13.3 0.0 13 5.1 0.0 2.7 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain AAA_28 PF13521.6 gi|385805001|ref|YP_005841401.1| - 0.079 13.2 0.2 3 8.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|385805001|ref|YP_005841401.1| - 0.1 12.7 1.8 0.61 10.2 0.1 2.7 2 2 0 2 2 2 0 50S ribosome-binding GTPase AAA_7 PF12775.7 gi|385805001|ref|YP_005841401.1| - 0.13 11.8 0.0 0.35 10.4 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_22 PF13401.6 gi|385805001|ref|YP_005841401.1| - 0.13 12.5 0.1 1.1 9.5 0.0 2.5 1 1 1 2 2 2 0 AAA domain ABC2_membrane_2 PF12679.7 gi|385805002|ref|YP_005841402.1| - 1.1e-48 165.9 21.1 1.3e-48 165.7 21.1 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|385805002|ref|YP_005841402.1| - 1.8e-09 37.3 16.1 1.8e-09 37.3 16.1 2.0 2 1 1 3 3 3 1 ABC-2 type transporter ABC2_membrane_5 PF13346.6 gi|385805002|ref|YP_005841402.1| - 3.1e-08 33.4 11.9 3.1e-08 33.4 11.9 2.5 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|385805002|ref|YP_005841402.1| - 3.7e-06 27.0 16.0 6.8e-06 26.2 12.4 2.6 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|385805002|ref|YP_005841402.1| - 9.6e-05 21.6 18.2 9.6e-05 21.6 18.2 2.7 1 1 2 3 3 3 2 ABC-2 family transporter protein DNA_ligase_aden PF01653.18 gi|385805003|ref|YP_005841403.1| - 5e-101 338.0 0.0 7.6e-101 337.4 0.0 1.2 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.16 gi|385805003|ref|YP_005841403.1| - 3.7e-29 100.4 3.3 9.7e-29 99.1 3.3 1.7 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.7 gi|385805003|ref|YP_005841403.1| - 9.3e-21 73.7 0.2 1.3e-18 66.8 0.0 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|385805003|ref|YP_005841403.1| - 5.8e-16 58.9 0.8 2.5e-07 31.2 0.2 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix domain BRCT PF00533.26 gi|385805003|ref|YP_005841403.1| - 6.9e-09 36.0 0.0 1.4e-08 35.0 0.0 1.5 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain DNA_ligase_ZBD PF03119.16 gi|385805003|ref|YP_005841403.1| - 0.00078 19.4 1.2 0.0018 18.2 1.2 1.7 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain HHH PF00633.23 gi|385805003|ref|YP_005841403.1| - 0.0032 17.3 0.1 7.5 6.6 0.0 3.9 3 0 0 3 3 3 2 Helix-hairpin-helix motif Cys_Met_Meta_PP PF01053.20 gi|385805004|ref|YP_005841404.1| - 2.6e-126 421.2 0.0 3.1e-126 421.0 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|385805004|ref|YP_005841404.1| - 1e-07 31.5 0.2 4.6e-07 29.3 0.0 1.9 2 0 0 2 2 2 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|385805004|ref|YP_005841404.1| - 1.7e-05 23.9 0.1 3.2e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|385805004|ref|YP_005841404.1| - 0.00049 19.5 0.1 0.00091 18.6 0.1 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|385805004|ref|YP_005841404.1| - 0.0021 17.4 2.6 0.0027 17.1 1.7 1.6 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Abhydrolase_1 PF00561.20 gi|385805005|ref|YP_005841405.1| - 3.9e-29 102.1 0.2 5.2e-29 101.7 0.2 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Esterase PF00756.20 gi|385805005|ref|YP_005841405.1| - 0.0019 17.9 0.0 0.0031 17.2 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Hydrolase_4 PF12146.8 gi|385805005|ref|YP_005841405.1| - 0.0055 16.0 0.0 0.01 15.1 0.0 1.4 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|385805005|ref|YP_005841405.1| - 0.013 15.0 0.3 0.19 11.2 0.0 2.3 3 0 0 3 3 3 0 Prolyl oligopeptidase family Tannase PF07519.11 gi|385805005|ref|YP_005841405.1| - 0.044 12.7 0.0 0.09 11.7 0.0 1.4 1 0 0 1 1 1 0 Tannase and feruloyl esterase Abhydrolase_4 PF08386.10 gi|385805005|ref|YP_005841405.1| - 0.095 12.8 0.0 0.25 11.5 0.0 1.7 1 0 0 1 1 1 0 TAP-like protein MFS_1 PF07690.16 gi|385805006|ref|YP_005841406.1| - 8.5e-32 110.4 58.2 7.4e-24 84.3 46.9 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily KleE PF17394.2 gi|385805006|ref|YP_005841406.1| - 0.036 14.3 0.3 0.036 14.3 0.3 2.0 2 0 0 2 2 2 0 Uncharacterized KleE stable inheritance protein 2TM PF13239.6 gi|385805006|ref|YP_005841406.1| - 7.2 7.0 6.0 46 4.4 1.1 3.1 2 0 0 2 2 2 0 2TM domain DHHA1 PF02272.19 gi|385805007|ref|YP_005841407.1| - 1.4e-17 64.4 0.6 1.4e-17 64.4 0.6 2.1 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|385805007|ref|YP_005841407.1| - 0.0042 17.3 0.1 0.0078 16.4 0.1 1.5 1 0 0 1 1 1 1 DHH family LMWPc PF01451.21 gi|385805007|ref|YP_005841407.1| - 0.17 12.3 0.0 0.41 11.0 0.0 1.6 1 0 0 1 1 1 0 Low molecular weight phosphotyrosine protein phosphatase PRRSV_2b PF07069.11 gi|385805008|ref|YP_005841408.1| - 0.034 14.6 1.0 0.043 14.3 1.0 1.2 1 0 0 1 1 1 0 Porcine reproductive and respiratory syndrome virus 2b DUF4083 PF13314.6 gi|385805008|ref|YP_005841408.1| - 0.51 10.3 3.1 0.83 9.6 3.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) PHO4 PF01384.20 gi|385805009|ref|YP_005841409.1| - 1.8e-46 158.7 38.2 2.5e-46 158.3 38.2 1.2 1 0 0 1 1 1 1 Phosphate transporter family DUF21 PF01595.20 gi|385805010|ref|YP_005841410.1| - 3.7e-50 170.0 0.2 5.3e-50 169.6 0.2 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|385805010|ref|YP_005841410.1| - 4.2e-19 68.3 1.2 4.2e-19 68.3 1.2 2.0 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 gi|385805010|ref|YP_005841410.1| - 1.1e-12 48.2 8.0 3e-07 30.8 0.4 3.2 3 0 0 3 3 3 2 CBS domain Rrp44_S1 PF17215.3 gi|385805010|ref|YP_005841410.1| - 0.0005 20.0 0.1 0.33 10.9 0.0 2.7 2 0 0 2 2 2 2 S1 domain GST_N_3 PF13417.6 gi|385805011|ref|YP_005841411.1| - 5.5e-16 58.8 0.0 6.6e-16 58.5 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 gi|385805011|ref|YP_005841411.1| - 6.6e-13 48.8 0.0 8e-13 48.5 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|385805011|ref|YP_005841411.1| - 3.8e-12 46.2 0.1 5.3e-12 45.8 0.1 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N PF02798.20 gi|385805011|ref|YP_005841411.1| - 2.5e-05 24.5 0.0 3.1e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Tom37 PF10568.9 gi|385805011|ref|YP_005841411.1| - 0.014 15.7 0.0 0.017 15.5 0.0 1.2 1 0 0 1 1 1 0 Outer mitochondrial membrane transport complex protein DUF836 PF05768.14 gi|385805011|ref|YP_005841411.1| - 0.054 13.9 0.0 0.062 13.7 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) AhpC-TSA PF00578.21 gi|385805012|ref|YP_005841412.1| - 6.9e-16 58.3 0.0 8.6e-16 58.0 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family AhpC-TSA_2 PF13911.6 gi|385805012|ref|YP_005841412.1| - 0.013 15.6 0.0 0.19 11.8 0.0 2.0 1 1 1 2 2 2 0 AhpC/TSA antioxidant enzyme Redoxin PF08534.10 gi|385805012|ref|YP_005841412.1| - 0.019 14.6 0.0 0.055 13.2 0.0 1.7 1 1 0 1 1 1 0 Redoxin Sua5_yciO_yrdC PF01300.18 gi|385805013|ref|YP_005841413.1| - 2.8e-47 160.5 0.2 3.3e-47 160.3 0.2 1.0 1 0 0 1 1 1 1 Telomere recombination HGTP_anticodon PF03129.20 gi|385805014|ref|YP_005841414.1| - 1e-19 70.4 0.1 2.5e-19 69.2 0.1 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|385805014|ref|YP_005841414.1| - 9.6e-09 35.5 0.0 9.4e-08 32.2 0.0 2.2 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) TRAF6_Z2 PF18048.1 gi|385805014|ref|YP_005841414.1| - 0.024 14.7 0.9 13 6.0 1.0 2.5 2 0 0 2 2 2 0 TNF receptor-associated factor 6 zinc finger 2 zinc_ribbon_4 PF13717.6 gi|385805014|ref|YP_005841414.1| - 0.069 13.1 1.2 2.2 8.3 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|385805014|ref|YP_005841414.1| - 0.21 11.5 1.7 1.1 9.2 0.3 2.3 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 UPF0547 PF10571.9 gi|385805014|ref|YP_005841414.1| - 0.24 11.5 2.7 14 5.9 0.4 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF1269 PF06897.12 gi|385805015|ref|YP_005841415.1| - 0.47 10.8 3.0 1 9.7 1.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) Arginosuc_synth PF00764.19 gi|385805016|ref|YP_005841416.1| - 1.4e-143 478.9 0.0 1.6e-143 478.7 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|385805016|ref|YP_005841416.1| - 2.4e-05 23.9 0.0 4.5e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|385805016|ref|YP_005841416.1| - 0.0017 17.2 0.0 0.0027 16.5 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|385805016|ref|YP_005841416.1| - 0.0065 16.2 0.1 0.019 14.6 0.1 1.7 2 0 0 2 2 2 1 Asparagine synthase NAD_synthase PF02540.17 gi|385805016|ref|YP_005841416.1| - 0.019 14.1 0.0 0.028 13.5 0.0 1.2 1 0 0 1 1 1 0 NAD synthase Lyase_1 PF00206.20 gi|385805017|ref|YP_005841417.1| - 1.9e-55 188.5 0.0 3.4e-55 187.6 0.0 1.4 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|385805017|ref|YP_005841417.1| - 1.4e-11 45.0 0.7 4.8e-11 43.3 0.1 2.4 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal PT-TG PF14449.6 gi|385805018|ref|YP_005841418.1| - 0.045 13.6 0.2 0.16 11.9 0.1 1.9 2 0 0 2 2 2 0 Pre-toxin TG Bac_DNA_binding PF00216.21 gi|385805018|ref|YP_005841418.1| - 0.21 11.8 0.0 1.1 9.5 0.0 1.8 1 1 1 2 2 2 0 Bacterial DNA-binding protein RimK PF08443.11 gi|385805019|ref|YP_005841419.1| - 1e-21 77.4 0.0 7.4e-21 74.6 0.0 1.9 2 0 0 2 2 2 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|385805019|ref|YP_005841419.1| - 1.4e-08 35.0 0.0 2.1e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|385805019|ref|YP_005841419.1| - 3e-06 26.9 0.0 8.8e-06 25.4 0.0 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|385805019|ref|YP_005841419.1| - 0.00018 21.1 0.0 0.00071 19.2 0.0 2.0 2 1 0 2 2 2 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|385805019|ref|YP_005841419.1| - 0.0047 16.4 0.0 0.055 12.9 0.0 2.2 1 1 1 2 2 2 1 ATP-grasp domain ATP-grasp_4 PF13535.6 gi|385805019|ref|YP_005841419.1| - 0.02 14.5 0.0 2 8.0 0.0 2.5 2 0 0 2 2 2 0 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|385805019|ref|YP_005841419.1| - 0.05 12.9 0.0 0.29 10.3 0.0 2.0 2 1 0 2 2 2 0 Sugar-transfer associated ATP-grasp Semialdhyde_dh PF01118.24 gi|385805020|ref|YP_005841420.1| - 3.8e-27 95.1 0.0 6.6e-27 94.4 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|385805020|ref|YP_005841420.1| - 6.8e-07 29.5 0.0 1.9e-06 28.1 0.0 1.9 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Epimerase PF01370.21 gi|385805020|ref|YP_005841420.1| - 0.0033 16.9 0.0 0.0051 16.3 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family DapB_N PF01113.20 gi|385805020|ref|YP_005841420.1| - 0.02 15.0 0.0 0.085 13.0 0.0 1.9 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NAD_binding_10 PF13460.6 gi|385805020|ref|YP_005841420.1| - 0.024 14.6 0.0 0.05 13.5 0.0 1.7 1 1 0 1 1 1 0 NAD(P)H-binding Endotoxin_C PF03944.14 gi|385805020|ref|YP_005841420.1| - 0.16 12.3 0.0 0.28 11.5 0.0 1.4 1 0 0 1 1 1 0 delta endotoxin AA_kinase PF00696.28 gi|385805021|ref|YP_005841421.1| - 1.2e-32 113.4 3.4 1.5e-32 113.1 3.4 1.1 1 0 0 1 1 1 1 Amino acid kinase family Aminotran_3 PF00202.21 gi|385805022|ref|YP_005841422.1| - 3.3e-108 361.9 0.1 4.3e-108 361.6 0.1 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Cys_Met_Meta_PP PF01053.20 gi|385805022|ref|YP_005841422.1| - 0.0018 16.9 0.0 0.01 14.4 0.0 1.9 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Peptidase_M20 PF01546.28 gi|385805023|ref|YP_005841423.1| - 9.4e-24 84.3 0.1 1.4e-23 83.7 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|385805023|ref|YP_005841423.1| - 0.00082 19.3 0.0 0.0018 18.2 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain OTCace_N PF02729.21 gi|385805024|ref|YP_005841424.1| - 7.2e-50 168.8 0.0 1.4e-49 167.9 0.0 1.5 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|385805024|ref|YP_005841424.1| - 2.6e-47 160.8 0.0 3.7e-47 160.3 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Helicase_C_2 PF13307.6 gi|385805025|ref|YP_005841425.1| - 4.1e-33 114.9 0.0 1.1e-32 113.5 0.0 1.7 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|385805025|ref|YP_005841425.1| - 3.7e-21 75.5 0.1 6.7e-21 74.7 0.1 1.4 1 0 0 1 1 1 1 DEAD_2 DEAD PF00270.29 gi|385805025|ref|YP_005841425.1| - 2.5e-08 33.9 0.6 2.8e-06 27.2 0.1 3.1 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|385805025|ref|YP_005841425.1| - 2.1e-06 27.9 0.1 0.0013 18.8 0.0 2.6 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit HBB PF06777.11 gi|385805025|ref|YP_005841425.1| - 0.00055 19.7 0.0 0.0013 18.4 0.0 1.6 1 0 0 1 1 1 1 Helical and beta-bridge domain PhoH PF02562.16 gi|385805025|ref|YP_005841425.1| - 0.0042 16.6 0.0 0.029 13.8 0.0 2.0 2 0 0 2 2 2 1 PhoH-like protein Zot PF05707.12 gi|385805025|ref|YP_005841425.1| - 0.0044 16.7 0.1 0.43 10.2 0.0 2.4 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) ATPase PF06745.13 gi|385805025|ref|YP_005841425.1| - 0.0053 16.1 0.0 0.0097 15.3 0.0 1.4 1 0 0 1 1 1 1 KaiC DUF2075 PF09848.9 gi|385805025|ref|YP_005841425.1| - 0.013 14.8 0.0 1.3 8.2 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA PF00004.29 gi|385805025|ref|YP_005841425.1| - 0.013 15.9 0.8 0.54 10.7 0.1 2.9 2 2 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_34 PF13872.6 gi|385805025|ref|YP_005841425.1| - 0.046 12.6 0.0 0.078 11.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 TrwB_AAD_bind PF10412.9 gi|385805025|ref|YP_005841425.1| - 0.051 12.5 0.0 0.11 11.4 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_30 PF13604.6 gi|385805025|ref|YP_005841425.1| - 0.059 13.1 0.1 0.15 11.7 0.1 1.7 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|385805025|ref|YP_005841425.1| - 0.09 12.3 0.2 0.69 9.5 0.0 2.6 3 0 0 3 3 3 0 AAA domain AAA_11 PF13086.6 gi|385805025|ref|YP_005841425.1| - 0.12 12.2 1.8 0.47 10.2 0.4 2.6 3 1 0 3 3 3 0 AAA domain TPR_MLP1_2 PF07926.12 gi|385805025|ref|YP_005841425.1| - 0.14 12.3 1.3 0.61 10.2 1.3 2.1 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein AAA_22 PF13401.6 gi|385805025|ref|YP_005841425.1| - 0.3 11.4 2.9 12 6.2 0.2 3.0 2 1 0 3 3 3 0 AAA domain AAA_16 PF13191.6 gi|385805025|ref|YP_005841425.1| - 0.84 10.0 3.6 8 6.8 2.6 3.0 1 1 1 2 2 2 0 AAA ATPase domain p450 PF00067.22 gi|385805026|ref|YP_005841426.1| - 2.8e-90 303.3 0.0 3.4e-90 303.0 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 2_5_RNA_ligase2 PF13563.6 gi|385805027|ref|YP_005841427.1| - 3.6e-13 49.7 0.0 4.8e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.16 gi|385805027|ref|YP_005841427.1| - 5e-05 23.4 0.0 0.0012 19.0 0.0 2.5 3 0 0 3 3 3 1 LigT like Phosphoesterase AKAP7_NLS PF10469.9 gi|385805027|ref|YP_005841427.1| - 8.3e-05 22.6 0.0 0.00063 19.7 0.0 1.9 1 1 1 2 2 2 1 AKAP7 2'5' RNA ligase-like domain Usp PF00582.26 gi|385805028|ref|YP_005841428.1| - 1.2e-30 106.8 0.4 1.6e-30 106.5 0.4 1.1 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.16 gi|385805028|ref|YP_005841428.1| - 0.071 13.8 0.1 0.099 13.4 0.0 1.4 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase TauE PF01925.19 gi|385805029|ref|YP_005841429.1| - 8.3e-30 104.2 19.2 8.3e-30 104.2 19.2 1.6 2 1 0 2 2 2 1 Sulfite exporter TauE/SafE PIG-P PF08510.12 gi|385805029|ref|YP_005841429.1| - 0.96 9.4 3.8 7.1 6.6 4.2 2.2 2 0 0 2 2 2 0 PIG-P UvrB_inter PF17757.1 gi|385805030|ref|YP_005841430.1| - 1.2e-32 111.9 0.0 3.1e-32 110.6 0.0 1.7 1 0 0 1 1 1 1 UvrB interaction domain UvrB PF12344.8 gi|385805030|ref|YP_005841430.1| - 8.8e-22 76.7 3.1 1.1e-21 76.4 1.5 2.0 2 0 0 2 2 2 1 Ultra-violet resistance protein B Helicase_C PF00271.31 gi|385805030|ref|YP_005841430.1| - 5e-17 62.2 0.1 1.2e-16 61.0 0.1 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain UVR PF02151.19 gi|385805030|ref|YP_005841430.1| - 1.2e-09 37.6 4.1 4.6e-09 35.7 4.1 2.1 1 0 0 1 1 1 1 UvrB/uvrC motif ResIII PF04851.15 gi|385805030|ref|YP_005841430.1| - 1.2e-06 28.6 0.0 1.1e-05 25.5 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Myb_DNA-bind_7 PF15963.5 gi|385805030|ref|YP_005841430.1| - 0.0025 17.7 0.1 0.011 15.6 0.1 2.1 1 0 0 1 1 1 1 Myb DNA-binding like DEAD PF00270.29 gi|385805030|ref|YP_005841430.1| - 0.006 16.4 0.0 0.048 13.4 0.0 2.5 3 0 0 3 3 3 1 DEAD/DEAH box helicase UB2H PF14814.6 gi|385805030|ref|YP_005841430.1| - 0.015 15.3 0.0 0.083 12.9 0.0 2.2 3 0 0 3 3 3 0 Bifunctional transglycosylase second domain AAA_19 PF13245.6 gi|385805030|ref|YP_005841430.1| - 0.03 14.7 0.1 12 6.2 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|385805030|ref|YP_005841430.1| - 0.04 14.3 0.5 2.2 8.7 0.0 3.4 4 0 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.17 gi|385805030|ref|YP_005841430.1| - 0.046 13.8 3.4 0.08 13.0 0.1 2.7 3 0 0 3 3 3 0 Helicase HerA, central domain AAA_30 PF13604.6 gi|385805030|ref|YP_005841430.1| - 0.075 12.7 0.0 0.65 9.7 0.0 2.3 3 0 0 3 3 3 0 AAA domain NACHT PF05729.12 gi|385805030|ref|YP_005841430.1| - 0.17 11.8 0.0 5.6 6.8 0.0 2.4 2 0 0 2 2 2 0 NACHT domain SCO1-SenC PF02630.14 gi|385805031|ref|YP_005841431.1| - 4.4e-05 23.4 0.2 9.4e-05 22.3 0.2 1.4 1 1 0 1 1 1 1 SCO1/SenC Med9 PF07544.13 gi|385805031|ref|YP_005841431.1| - 0.001 19.1 1.3 0.74 9.9 0.3 2.1 1 1 1 2 2 2 2 RNA polymerase II transcription mediator complex subunit 9 NAT PF04768.13 gi|385805031|ref|YP_005841431.1| - 0.0026 17.4 0.2 0.003 17.2 0.2 1.1 1 0 0 1 1 1 1 NAT, N-acetyltransferase, of N-acetylglutamate synthase Latarcin PF10279.9 gi|385805031|ref|YP_005841431.1| - 0.012 16.0 0.4 0.024 15.0 0.4 1.5 1 1 0 1 1 1 0 Latarcin precursor HrpJ PF07201.11 gi|385805031|ref|YP_005841431.1| - 0.014 15.7 4.8 0.021 15.1 4.8 1.3 1 1 0 1 1 1 0 HrpJ-like domain Translin PF01997.16 gi|385805031|ref|YP_005841431.1| - 0.028 14.4 1.7 0.034 14.1 1.7 1.1 1 0 0 1 1 1 0 Translin family GAGBD PF16828.5 gi|385805031|ref|YP_005841431.1| - 0.043 13.9 1.8 0.092 12.8 0.7 1.8 1 1 1 2 2 2 0 GAG-binding domain on surface antigen Sld7_C PF18596.1 gi|385805031|ref|YP_005841431.1| - 0.045 13.9 0.5 0.068 13.3 0.5 1.2 1 0 0 1 1 1 0 Sld7 C-terminal domain YkyA PF10368.9 gi|385805031|ref|YP_005841431.1| - 0.047 13.3 4.5 0.059 13.0 4.2 1.3 1 1 0 1 1 1 0 Putative cell-wall binding lipoprotein AAA_32 PF13654.6 gi|385805031|ref|YP_005841431.1| - 0.059 12.2 3.5 0.063 12.1 3.5 1.0 1 0 0 1 1 1 0 AAA domain KASH_CCD PF14662.6 gi|385805031|ref|YP_005841431.1| - 0.059 13.2 6.4 0.068 13.0 6.4 1.1 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH Phage_GP20 PF06810.11 gi|385805031|ref|YP_005841431.1| - 0.34 10.7 6.1 0.41 10.4 2.5 1.9 1 1 1 2 2 2 0 Phage minor structural protein GP20 TMPIT PF07851.13 gi|385805031|ref|YP_005841431.1| - 0.38 9.9 2.3 0.41 9.8 2.3 1.0 1 0 0 1 1 1 0 TMPIT-like protein DUF4404 PF14357.6 gi|385805031|ref|YP_005841431.1| - 0.96 10.1 9.1 1.7 9.4 0.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) FUSC PF04632.12 gi|385805031|ref|YP_005841431.1| - 1.7 7.1 3.9 2 6.8 3.9 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF521 PF04412.13 gi|385805032|ref|YP_005841432.1| - 0.017 13.8 0.0 0.025 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) SpoIIM PF01944.17 gi|385805033|ref|YP_005841433.1| - 2.9e-25 89.1 16.9 2.9e-25 89.1 16.9 4.1 2 1 1 3 3 3 1 Stage II sporulation protein M Rhodanese PF00581.20 gi|385805034|ref|YP_005841434.1| - 1.3e-32 112.5 0.2 1.1e-16 61.3 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.20 gi|385805035|ref|YP_005841435.1| - 1.3e-34 118.9 0.0 1.6e-17 63.9 0.0 2.4 2 1 0 2 2 2 2 Rhodanese-like domain DUF2080 PF09853.9 gi|385805037|ref|YP_005841437.1| - 0.00051 19.7 0.0 0.00075 19.2 0.0 1.2 1 0 0 1 1 1 1 Putative transposon-encoded protein (DUF2080) Methyltransf_11 PF08241.12 gi|385805038|ref|YP_005841438.1| - 4.5e-22 78.5 0.0 6.9e-22 77.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|385805038|ref|YP_005841438.1| - 1.5e-17 64.1 0.0 2.5e-17 63.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|385805038|ref|YP_005841438.1| - 8.3e-17 61.4 0.0 1e-16 61.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|385805038|ref|YP_005841438.1| - 1.1e-12 48.1 0.0 1.4e-12 47.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|385805038|ref|YP_005841438.1| - 3.3e-09 36.4 0.0 6.2e-09 35.5 0.0 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|385805038|ref|YP_005841438.1| - 3.9e-09 37.2 0.0 6e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|385805038|ref|YP_005841438.1| - 1.1e-07 31.4 0.0 1.4e-07 31.0 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_9 PF08003.11 gi|385805038|ref|YP_005841438.1| - 3.2e-06 26.3 0.0 4.4e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.12 gi|385805038|ref|YP_005841438.1| - 3.1e-05 23.7 0.0 4.5e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.19 gi|385805038|ref|YP_005841438.1| - 0.001 18.9 0.0 0.0018 18.1 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_29 PF03141.16 gi|385805038|ref|YP_005841438.1| - 0.011 14.3 0.0 0.014 14.0 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase CMAS PF02353.20 gi|385805038|ref|YP_005841438.1| - 0.017 14.4 0.0 0.02 14.2 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|385805038|ref|YP_005841438.1| - 0.074 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|385805038|ref|YP_005841438.1| - 0.12 11.9 0.0 0.32 10.5 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_8 PF05148.15 gi|385805038|ref|YP_005841438.1| - 0.12 12.1 0.0 0.27 11.1 0.0 1.5 2 0 0 2 2 2 0 Hypothetical methyltransferase ATPase PF06745.13 gi|385805039|ref|YP_005841439.1| - 0.0028 17.0 0.1 0.0035 16.7 0.1 1.1 1 0 0 1 1 1 1 KaiC DUF4822 PF16103.5 gi|385805039|ref|YP_005841439.1| - 0.079 13.2 0.1 0.15 12.4 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4822) DUF2072 PF09845.9 gi|385805041|ref|YP_005841441.1| - 1.9e-31 109.0 16.2 1.7e-16 60.7 0.3 2.9 2 1 0 2 2 2 2 Zn-ribbon containing protein Zn-ribbon_8 PF09723.10 gi|385805041|ref|YP_005841441.1| - 0.08 13.1 2.6 0.22 11.7 2.6 1.8 1 0 0 1 1 1 0 Zinc ribbon domain DUF1272 PF06906.11 gi|385805041|ref|YP_005841441.1| - 0.35 11.0 1.5 0.63 10.2 1.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-C2H2 PF00096.26 gi|385805041|ref|YP_005841441.1| - 2.7 8.6 4.1 3.7 8.2 0.3 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type zinc_ribbon_2 PF13240.6 gi|385805041|ref|YP_005841441.1| - 3.1 7.6 7.1 2 8.2 4.6 2.1 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|385805041|ref|YP_005841441.1| - 4.9 6.7 6.1 18 5.0 0.1 2.8 3 0 0 3 3 3 0 TFIIB zinc-binding DUF2073 PF09846.9 gi|385805042|ref|YP_005841442.1| - 9.1e-44 147.6 0.3 1.2e-43 147.3 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.23 gi|385805043|ref|YP_005841443.1| - 5.7e-15 55.4 0.0 8e-15 54.9 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|385805043|ref|YP_005841443.1| - 5e-10 39.2 0.3 0.00029 20.4 0.0 3.1 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|385805043|ref|YP_005841443.1| - 7.5e-07 28.8 0.0 0.00046 19.7 0.0 2.5 2 1 1 3 3 3 2 ADP-ribosylation factor family SRPRB PF09439.10 gi|385805043|ref|YP_005841443.1| - 1.8e-05 24.3 0.0 0.069 12.6 0.0 2.3 2 0 0 2 2 2 2 Signal recognition particle receptor beta subunit FeoB_N PF02421.18 gi|385805043|ref|YP_005841443.1| - 2.9e-05 23.6 0.4 0.00033 20.2 0.4 2.5 1 1 0 1 1 1 1 Ferrous iron transport protein B Septin PF00735.18 gi|385805043|ref|YP_005841443.1| - 0.00036 19.9 0.0 0.00054 19.3 0.0 1.4 1 1 0 1 1 1 1 Septin Roc PF08477.13 gi|385805043|ref|YP_005841443.1| - 0.00065 19.9 0.0 0.0063 16.7 0.0 2.1 1 1 1 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA_18 PF13238.6 gi|385805043|ref|YP_005841443.1| - 0.00088 19.8 0.0 0.0026 18.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain Dynamin_N PF00350.23 gi|385805043|ref|YP_005841443.1| - 0.0017 18.5 0.0 0.5 10.4 0.2 2.7 1 1 1 2 2 2 1 Dynamin family NB-ARC PF00931.22 gi|385805043|ref|YP_005841443.1| - 0.0021 17.3 0.0 0.0034 16.6 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain MMR_HSR1_Xtn PF16897.5 gi|385805043|ref|YP_005841443.1| - 0.0021 18.1 0.0 0.004 17.1 0.0 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain AAA_24 PF13479.6 gi|385805043|ref|YP_005841443.1| - 0.0027 17.5 0.0 0.0043 16.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|385805043|ref|YP_005841443.1| - 0.0053 17.2 0.0 0.012 16.0 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|385805043|ref|YP_005841443.1| - 0.0071 16.6 0.1 0.059 13.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|385805043|ref|YP_005841443.1| - 0.0076 16.7 0.0 0.024 15.0 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|385805043|ref|YP_005841443.1| - 0.0084 15.7 0.1 2.6 7.6 0.0 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain RNA_helicase PF00910.22 gi|385805043|ref|YP_005841443.1| - 0.009 16.4 0.0 0.021 15.2 0.0 1.7 2 0 0 2 2 1 1 RNA helicase ATPase_2 PF01637.18 gi|385805043|ref|YP_005841443.1| - 0.024 14.6 0.0 0.044 13.7 0.0 1.7 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea ABC_tran PF00005.27 gi|385805043|ref|YP_005841443.1| - 0.03 14.9 0.0 0.042 14.4 0.0 1.4 1 0 0 1 1 1 0 ABC transporter RuvB_N PF05496.12 gi|385805043|ref|YP_005841443.1| - 0.06 13.1 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain NACHT PF05729.12 gi|385805043|ref|YP_005841443.1| - 0.069 13.1 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain MeaB PF03308.16 gi|385805043|ref|YP_005841443.1| - 0.081 11.9 0.0 0.88 8.5 0.0 2.3 2 1 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_25 PF13481.6 gi|385805043|ref|YP_005841443.1| - 0.1 12.2 0.0 0.38 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain Gtr1_RagA PF04670.12 gi|385805043|ref|YP_005841443.1| - 0.11 11.8 0.0 1.4 8.2 0.0 2.1 2 1 0 2 2 2 0 Gtr1/RagA G protein conserved region DUF1184 PF06683.11 gi|385805043|ref|YP_005841443.1| - 0.13 11.7 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1184) ATP-synt_ab PF00006.25 gi|385805043|ref|YP_005841443.1| - 0.13 11.8 0.0 0.17 11.5 0.0 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloquadratum_walsbyi_C23_uid162019/NC_017459.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloquadratum_walsbyi_C23_uid162019/NC_017459.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloquadratum_walsbyi_C23_uid162019/NC_017459.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloquadratum_walsbyi_C23_uid162019/NC_017459.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 13:00:15 2019 # [ok]