#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
HTH_23	PF13384.1	gi|385802376|ref|YP_005838777.1|	-	0.0015	18.1	0.5	0.043	13.4	0.0	2.4	2	0	0	2	2	2	1	Homeodomain-like	domain
DUF1899	PF08953.6	gi|385802376|ref|YP_005838777.1|	-	0.15	11.6	0.0	0.29	10.8	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1899)
TrmB	PF01978.14	gi|385802377|ref|YP_005838778.1|	-	0.027	14.1	0.0	0.088	12.5	0.0	1.8	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_15	PF12324.3	gi|385802377|ref|YP_005838778.1|	-	0.11	12.1	0.1	0.42	10.2	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	alkylmercury	lyase
HTH_11	PF08279.7	gi|385802377|ref|YP_005838778.1|	-	0.14	11.8	0.0	0.47	10.1	0.0	1.8	2	0	0	2	2	2	0	HTH	domain
AAA_17	PF13207.1	gi|385802379|ref|YP_005838780.1|	-	0.002	18.9	0.3	0.019	15.7	0.0	2.2	1	1	0	2	2	2	1	AAA	domain
AAA	PF00004.24	gi|385802379|ref|YP_005838780.1|	-	0.0025	18.0	0.0	0.0048	17.0	0.0	1.5	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_25	PF13481.1	gi|385802379|ref|YP_005838780.1|	-	0.0069	15.8	0.3	0.63	9.4	0.1	2.4	1	1	0	1	1	1	1	AAA	domain
HTH_23	PF13384.1	gi|385802379|ref|YP_005838780.1|	-	0.0094	15.5	0.1	0.022	14.4	0.0	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
CbiA	PF01656.18	gi|385802379|ref|YP_005838780.1|	-	0.026	13.9	0.0	0.037	13.4	0.0	1.3	1	0	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
HTH_31	PF13560.1	gi|385802379|ref|YP_005838780.1|	-	0.033	14.3	0.0	0.1	12.8	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
IstB_IS21	PF01695.12	gi|385802379|ref|YP_005838780.1|	-	0.1	11.9	0.1	0.24	10.8	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
ArsA_ATPase	PF02374.10	gi|385802379|ref|YP_005838780.1|	-	0.31	10.0	1.9	0.34	9.8	0.2	1.7	2	0	0	2	2	2	0	Anion-transporting	ATPase
RHH_1	PF01402.16	gi|385802381|ref|YP_005838782.1|	-	0.043	13.7	0.7	0.043	13.7	0.5	2.1	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family