#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
HTH_29	PF13551.1	gi|385802306|ref|YP_005838708.1|	-	0.0043	17.1	0.0	0.0054	16.8	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.1	gi|385802306|ref|YP_005838708.1|	-	0.019	14.6	0.0	0.022	14.4	0.0	1.2	1	0	0	1	1	1	0	Homeodomain-like	domain
Ldl_recept_b	PF00058.12	gi|385802307|ref|YP_005838709.1|	-	0.022	15.0	0.0	0.052	13.8	0.0	1.6	1	0	0	1	1	1	0	Low-density	lipoprotein	receptor	repeat	class	B
DUF4178	PF13785.1	gi|385802307|ref|YP_005838709.1|	-	0.079	12.9	0.2	0.11	12.5	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4178)
DUF3244	PF11589.3	gi|385802307|ref|YP_005838709.1|	-	0.18	11.5	1.5	2	8.1	0.1	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3244)
DUF746	PF05344.6	gi|385802308|ref|YP_005838710.1|	-	0.022	14.2	0.0	0.06	12.8	0.0	1.7	2	0	0	2	2	2	0	Domain	of	Unknown	Function	(DUF746)
DUF3657	PF12394.3	gi|385802308|ref|YP_005838710.1|	-	0.025	14.6	0.0	0.055	13.5	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3657)
Mrr_N	PF14338.1	gi|385802308|ref|YP_005838710.1|	-	0.08	13.0	0.1	0.17	11.9	0.1	1.6	2	0	0	2	2	2	0	Mrr	N-terminal	domain
DUF3235	PF11574.3	gi|385802308|ref|YP_005838710.1|	-	0.1	12.8	0.0	0.2	11.8	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3235)
HTH_28	PF13518.1	gi|385802308|ref|YP_005838710.1|	-	0.11	12.5	0.0	1.1	9.3	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
EAP30	PF04157.11	gi|385802308|ref|YP_005838710.1|	-	0.11	11.6	0.2	0.15	11.1	0.1	1.2	1	0	0	1	1	1	0	EAP30/Vps36	family
HTH_29	PF13551.1	gi|385802308|ref|YP_005838710.1|	-	0.11	12.6	0.0	4.9	7.3	0.0	2.4	2	0	0	2	2	2	0	Winged	helix-turn	helix
DUF294_C	PF10335.4	gi|385802311|ref|YP_005838713.1|	-	0.072	12.7	0.0	0.072	12.7	0.0	1.1	1	0	0	1	1	1	0	Putative	nucleotidyltransferase	substrate	binding	domain
PAS_4	PF08448.5	gi|385802313|ref|YP_005838715.1|	-	3.3e-33	113.9	10.0	6.3e-14	51.9	0.1	4.4	4	0	0	4	4	4	4	PAS	fold
PAS_9	PF13426.1	gi|385802313|ref|YP_005838715.1|	-	9.1e-32	109.5	9.0	2.9e-10	40.4	0.2	5.1	5	0	0	5	5	5	4	PAS	domain
PAS_3	PF08447.6	gi|385802313|ref|YP_005838715.1|	-	1.5e-23	82.7	3.2	3.1e-12	46.4	0.0	4.3	4	0	0	4	4	4	3	PAS	fold
HATPase_c	PF02518.21	gi|385802313|ref|YP_005838715.1|	-	1.2e-20	73.2	0.1	3e-20	72.0	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Response_reg	PF00072.19	gi|385802313|ref|YP_005838715.1|	-	6e-19	68.1	0.0	1.7e-18	66.6	0.0	1.8	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS	PF00989.19	gi|385802313|ref|YP_005838715.1|	-	3.9e-18	65.2	3.4	1.3e-06	28.1	0.0	4.9	4	0	0	4	4	4	3	PAS	fold
HisKA	PF00512.20	gi|385802313|ref|YP_005838715.1|	-	1.2e-13	50.8	0.5	1.2e-13	50.8	0.3	3.6	5	0	0	5	5	5	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_8	PF13188.1	gi|385802313|ref|YP_005838715.1|	-	1.5e-10	40.4	0.0	4.3e-06	26.3	0.0	3.6	4	0	0	4	4	4	2	PAS	domain
HATPase_c_3	PF13589.1	gi|385802313|ref|YP_005838715.1|	-	0.0011	18.6	0.5	0.0041	16.7	0.4	2.0	1	1	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
TUG-UBL1	PF11470.3	gi|385802313|ref|YP_005838715.1|	-	0.18	11.7	0.7	8.2	6.4	0.0	3.4	4	0	0	4	4	4	0	GLUT4	regulating	protein	TUG
BIV_Env	PF05858.7	gi|385802314|ref|YP_005838716.1|	-	0.095	10.6	0.5	0.12	10.3	0.3	1.2	1	0	0	1	1	1	0	Bovine	immunodeficiency	virus	surface	protein	(SU)
Synaphin	PF05835.7	gi|385802315|ref|YP_005838717.1|	-	4.8	7.3	10.7	0.62	10.2	4.3	1.7	1	1	0	2	2	2	0	Synaphin	protein
CbiA	PF01656.18	gi|385802316|ref|YP_005838718.1|	-	2e-19	69.7	0.0	2.8e-19	69.2	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|385802316|ref|YP_005838718.1|	-	2e-07	31.0	0.0	9.8e-07	28.8	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
ArsA_ATPase	PF02374.10	gi|385802316|ref|YP_005838718.1|	-	3.4e-07	29.5	0.0	6.2e-07	28.7	0.0	1.3	1	0	0	1	1	1	1	Anion-transporting	ATPase
MipZ	PF09140.6	gi|385802316|ref|YP_005838718.1|	-	0.0017	17.5	0.0	0.03	13.4	0.0	2.2	1	1	0	2	2	2	1	ATPase	MipZ
SRP54	PF00448.17	gi|385802316|ref|YP_005838718.1|	-	0.0091	15.4	0.0	0.02	14.3	0.0	1.5	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
Fer4_NifH	PF00142.13	gi|385802316|ref|YP_005838718.1|	-	0.0098	15.1	0.0	0.016	14.3	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
YhjQ	PF06564.7	gi|385802316|ref|YP_005838718.1|	-	0.011	15.1	0.0	0.019	14.3	0.0	1.3	1	0	0	1	1	1	0	YhjQ	protein
AAA_10	PF12846.2	gi|385802316|ref|YP_005838718.1|	-	0.019	14.3	0.0	0.47	9.8	0.0	2.2	1	1	1	2	2	2	0	AAA-like	domain
AAA_19	PF13245.1	gi|385802316|ref|YP_005838718.1|	-	0.071	12.8	1.4	0.19	11.5	0.5	2.1	2	1	0	2	2	2	0	Part	of	AAA	domain
NB-ARC	PF00931.17	gi|385802317|ref|YP_005838719.1|	-	1.5e-06	27.3	0.0	0.053	12.3	0.0	2.5	2	0	0	2	2	2	2	NB-ARC	domain
AAA_22	PF13401.1	gi|385802317|ref|YP_005838719.1|	-	0.00011	22.3	0.0	0.00042	20.4	0.0	2.0	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|385802317|ref|YP_005838719.1|	-	0.0026	17.7	0.4	0.046	13.6	0.3	2.6	1	1	0	1	1	1	1	AAA	ATPase	domain
NACHT	PF05729.7	gi|385802317|ref|YP_005838719.1|	-	0.037	13.7	0.0	0.098	12.3	0.0	1.8	1	0	0	1	1	1	0	NACHT	domain
Phage_integrase	PF00589.17	gi|385802318|ref|YP_005838720.1|	-	1.2e-12	47.8	0.0	1.2e-11	44.5	0.0	2.3	1	1	0	1	1	1	1	Phage	integrase	family
Hormone_3	PF00159.13	gi|385802319|ref|YP_005838721.1|	-	0.039	13.9	4.0	0.041	13.8	0.8	2.3	2	0	0	2	2	2	0	Pancreatic	hormone	peptide
Pentapeptide	PF00805.17	gi|385802320|ref|YP_005838722.1|	-	3.9e-122	396.2	143.6	8e-14	50.5	5.7	14.3	5	4	8	15	15	15	15	Pentapeptide	repeats	(8	copies)
Pentapeptide_4	PF13599.1	gi|385802320|ref|YP_005838722.1|	-	1.5e-82	271.3	39.4	5.6e-14	51.7	1.2	8.7	1	1	9	10	10	10	10	Pentapeptide	repeats	(9	copies)
Pentapeptide_3	PF13576.1	gi|385802320|ref|YP_005838722.1|	-	3.4e-58	193.2	26.8	1.4e-06	28.0	0.9	13.2	3	3	6	10	10	10	10	Pentapeptide	repeats	(9	copies)
AAA_22	PF13401.1	gi|385802322|ref|YP_005838724.1|	-	0.00069	19.7	0.7	0.032	14.3	0.3	2.9	2	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|385802322|ref|YP_005838724.1|	-	0.0062	16.5	0.0	0.023	14.6	0.0	2.0	2	1	0	2	2	2	1	AAA	ATPase	domain
Glyco_hydro_38	PF01074.17	gi|385802322|ref|YP_005838724.1|	-	0.0065	15.7	0.3	0.43	9.7	0.2	2.6	2	1	0	2	2	2	1	Glycosyl	hydrolases	family	38	N-terminal	domain
AAA_19	PF13245.1	gi|385802322|ref|YP_005838724.1|	-	0.052	13.3	0.0	0.14	11.9	0.0	1.6	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_14	PF13173.1	gi|385802322|ref|YP_005838724.1|	-	0.13	12.1	0.5	2.8	7.8	0.4	2.7	1	1	0	1	1	1	0	AAA	domain
CK2S	PF15011.1	gi|385802323|ref|YP_005838725.1|	-	0.0025	17.5	4.6	0.07	12.9	0.3	3.3	4	0	0	4	4	4	2	Casein	Kinase	2	substrate
Nsp1_C	PF05064.8	gi|385802323|ref|YP_005838725.1|	-	3.9	7.1	25.4	0.13	11.8	0.2	4.7	5	0	0	5	5	5	0	Nsp1-like	C-terminal	region
DUF948	PF06103.6	gi|385802324|ref|YP_005838726.1|	-	0.021	14.7	0.2	0.021	14.7	0.1	6.3	7	3	3	10	10	10	0	Bacterial	protein	of	unknown	function	(DUF948)
Homeobox_KN	PF05920.6	gi|385802324|ref|YP_005838726.1|	-	0.021	14.5	1.9	6.9	6.4	0.0	4.6	4	0	0	4	4	4	0	Homeobox	KN	domain
DUF2443	PF10398.4	gi|385802324|ref|YP_005838726.1|	-	0.71	9.7	12.8	4.1	7.2	0.0	5.3	4	1	0	4	4	4	0	Protein	of	unknown	function	(DUF2443)
DUF2959	PF11172.3	gi|385802324|ref|YP_005838726.1|	-	2.4	7.8	27.4	0.017	14.8	2.0	5.1	5	1	1	6	6	6	0	Protein	of	unknown	function	(DUF2959)
TctB	PF07331.6	gi|385802326|ref|YP_005838728.1|	-	0.013	15.2	0.4	0.015	14.9	0.3	1.0	1	0	0	1	1	1	0	Tripartite	tricarboxylate	transporter	TctB	family
NrfD	PF03916.9	gi|385802326|ref|YP_005838728.1|	-	0.027	13.9	1.1	0.029	13.7	0.7	1.1	1	0	0	1	1	1	0	Polysulphide	reductase,	NrfD
ATPase_gene1	PF09527.5	gi|385802326|ref|YP_005838728.1|	-	0.073	12.8	0.5	0.073	12.8	0.3	1.9	2	0	0	2	2	2	0	Putative	F0F1-ATPase	subunit	(ATPase_gene1)
Claudin_2	PF13903.1	gi|385802326|ref|YP_005838728.1|	-	0.11	12.1	2.1	0.11	12.1	1.5	1.0	1	0	0	1	1	1	0	PMP-22/EMP/MP20/Claudin	tight	junction
PepSY_TM_1	PF13172.1	gi|385802326|ref|YP_005838728.1|	-	1.5	8.6	4.9	1.4	8.7	0.1	2.6	2	1	1	3	3	3	0	PepSY-associated	TM	helix
AAA_16	PF13191.1	gi|385802328|ref|YP_005838730.1|	-	6.3e-15	55.6	0.1	1.9e-14	54.0	0.0	1.8	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.24	gi|385802328|ref|YP_005838730.1|	-	4.4e-13	49.5	0.0	1e-12	48.3	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Cdc6_C	PF09079.6	gi|385802328|ref|YP_005838730.1|	-	3.7e-09	36.1	0.1	8.7e-09	34.9	0.1	1.7	1	0	0	1	1	1	1	CDC6,	C	terminal
AAA_22	PF13401.1	gi|385802328|ref|YP_005838730.1|	-	1.1e-08	35.2	0.0	2.9e-08	33.9	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
DUF815	PF05673.8	gi|385802328|ref|YP_005838730.1|	-	2e-06	26.9	0.0	4.7e-06	25.7	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
Arch_ATPase	PF01637.13	gi|385802328|ref|YP_005838730.1|	-	1.5e-05	24.8	0.0	3e-05	23.8	0.0	1.5	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_17	PF13207.1	gi|385802328|ref|YP_005838730.1|	-	0.00016	22.5	1.2	0.015	16.0	0.9	2.8	1	1	0	1	1	1	1	AAA	domain
Sigma54_activat	PF00158.21	gi|385802328|ref|YP_005838730.1|	-	0.0019	17.7	0.0	0.0045	16.4	0.0	1.6	2	0	0	2	2	1	1	Sigma-54	interaction	domain
AAA_10	PF12846.2	gi|385802328|ref|YP_005838730.1|	-	0.0071	15.8	0.4	0.061	12.7	0.0	2.4	1	1	2	3	3	3	1	AAA-like	domain
RNA_helicase	PF00910.17	gi|385802328|ref|YP_005838730.1|	-	0.0076	16.4	0.0	0.028	14.6	0.0	2.0	2	0	0	2	2	2	1	RNA	helicase
AAA_19	PF13245.1	gi|385802328|ref|YP_005838730.1|	-	0.011	15.4	0.0	0.028	14.1	0.0	1.7	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_29	PF13555.1	gi|385802328|ref|YP_005838730.1|	-	0.012	15.0	0.0	0.026	14.0	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.1	gi|385802328|ref|YP_005838730.1|	-	0.013	14.9	0.0	0.046	13.1	0.0	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_PrkA	PF08298.6	gi|385802328|ref|YP_005838730.1|	-	0.017	13.8	0.0	0.027	13.1	0.0	1.3	1	0	0	1	1	1	0	PrkA	AAA	domain
NACHT	PF05729.7	gi|385802328|ref|YP_005838730.1|	-	0.022	14.3	0.0	0.052	13.2	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
IstB_IS21	PF01695.12	gi|385802328|ref|YP_005838730.1|	-	0.033	13.5	0.1	0.22	10.9	0.0	2.3	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_14	PF13173.1	gi|385802328|ref|YP_005838730.1|	-	0.044	13.6	0.3	0.33	10.8	0.0	2.5	2	1	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.22	gi|385802328|ref|YP_005838730.1|	-	0.046	14.0	0.2	0.19	12.0	0.0	2.1	2	1	0	2	2	2	0	ABC	transporter
DUF258	PF03193.11	gi|385802328|ref|YP_005838730.1|	-	0.051	12.7	0.0	0.11	11.7	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
MMR_HSR1	PF01926.18	gi|385802328|ref|YP_005838730.1|	-	0.052	13.5	0.3	0.16	11.8	0.0	2.0	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_5	PF07728.9	gi|385802328|ref|YP_005838730.1|	-	0.055	13.1	0.1	0.28	10.9	0.0	2.2	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.1	gi|385802328|ref|YP_005838730.1|	-	0.06	13.2	0.3	0.74	9.6	0.0	2.7	2	1	0	2	2	2	0	AAA	domain
Mg_chelatase	PF01078.16	gi|385802328|ref|YP_005838730.1|	-	0.088	11.9	0.0	0.16	11.1	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
cobW	PF02492.14	gi|385802328|ref|YP_005838730.1|	-	0.11	11.9	0.0	0.25	10.7	0.0	1.7	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_23	PF13476.1	gi|385802328|ref|YP_005838730.1|	-	0.11	12.7	1.4	0.32	11.2	0.9	2.2	1	1	0	1	1	1	0	AAA	domain
zf-ribbon_3	PF13248.1	gi|385802330|ref|YP_005838732.1|	-	4.6e-06	25.6	1.9	6.9e-06	25.1	1.3	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|385802330|ref|YP_005838732.1|	-	7.9e-05	22.3	1.2	0.00012	21.8	0.8	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|385802330|ref|YP_005838732.1|	-	8.5e-05	21.9	4.1	0.00015	21.1	2.8	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
Nudix_N_2	PF14803.1	gi|385802330|ref|YP_005838732.1|	-	0.021	14.4	2.3	3.9	7.2	0.0	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
zf-C3HC4_3	PF13920.1	gi|385802330|ref|YP_005838732.1|	-	0.13	11.9	0.2	0.18	11.5	0.1	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
NOB1_Zn_bind	PF08772.6	gi|385802330|ref|YP_005838732.1|	-	0.14	11.9	0.4	0.21	11.4	0.2	1.3	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
UPF0547	PF10571.4	gi|385802330|ref|YP_005838732.1|	-	0.18	11.5	1.2	0.37	10.5	0.8	1.5	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
zf-IS66	PF13005.2	gi|385802330|ref|YP_005838732.1|	-	0.48	10.4	2.8	3.9	7.5	0.1	2.3	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
TF_Zn_Ribbon	PF08271.7	gi|385802330|ref|YP_005838732.1|	-	3.3	7.0	7.1	42	3.5	5.0	2.2	1	1	0	1	1	1	0	TFIIB	zinc-binding
zf-NADH-PPase	PF09297.6	gi|385802330|ref|YP_005838732.1|	-	4	7.0	6.7	1.7e+02	1.8	4.9	2.2	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-ribbon_3	PF13248.1	gi|385802331|ref|YP_005838733.1|	-	5.8e-08	31.6	4.4	1e-07	30.8	3.1	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|385802331|ref|YP_005838733.1|	-	1.5e-07	30.6	5.7	2.5e-07	29.9	4.0	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|385802331|ref|YP_005838733.1|	-	2.3e-05	24.1	1.2	4.3e-05	23.2	0.8	1.4	1	0	0	1	1	1	1	Double	zinc	ribbon
Nudix_N_2	PF14803.1	gi|385802331|ref|YP_005838733.1|	-	0.0025	17.4	2.1	0.47	10.1	0.0	2.4	2	0	0	2	2	2	2	Nudix	N-terminal
RNHCP	PF12647.2	gi|385802331|ref|YP_005838733.1|	-	0.11	12.2	0.5	0.25	11.1	0.2	1.7	2	0	0	2	2	2	0	RNHCP	domain
UPF0547	PF10571.4	gi|385802331|ref|YP_005838733.1|	-	0.14	11.8	1.9	0.65	9.7	1.5	2.0	1	1	1	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-NADH-PPase	PF09297.6	gi|385802331|ref|YP_005838733.1|	-	0.2	11.1	1.1	5.3	6.6	0.0	2.4	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
RNA_POL_M_15KD	PF02150.11	gi|385802331|ref|YP_005838733.1|	-	0.47	10.1	2.2	12	5.6	0.0	2.4	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
GFA	PF04828.9	gi|385802331|ref|YP_005838733.1|	-	0.58	10.1	3.0	12	5.9	0.1	2.6	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
TF_Zn_Ribbon	PF08271.7	gi|385802331|ref|YP_005838733.1|	-	2.4	7.5	7.1	22	4.4	4.9	2.4	1	1	0	1	1	1	0	TFIIB	zinc-binding
DUF1610	PF07754.6	gi|385802331|ref|YP_005838733.1|	-	4	7.6	8.2	15	5.7	4.5	2.8	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF1610)
RPEL	PF02755.10	gi|385802335|ref|YP_005838737.1|	-	0.0045	16.2	2.3	0.17	11.2	0.1	2.7	2	0	0	2	2	2	2	RPEL	repeat
Complex1_LYR	PF05347.10	gi|385802335|ref|YP_005838737.1|	-	0.017	14.9	0.0	2.2	8.1	0.0	2.4	2	0	0	2	2	2	0	Complex	1	protein	(LYR	family)
Peptidase_S49	PF01343.13	gi|385802335|ref|YP_005838737.1|	-	0.14	11.9	0.0	0.18	11.5	0.0	1.2	1	0	0	1	1	1	0	Peptidase	family	S49
DUF91	PF01939.11	gi|385802336|ref|YP_005838738.1|	-	6.2e-07	28.8	0.0	1e-06	28.0	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF91
DUF3089	PF11288.3	gi|385802336|ref|YP_005838738.1|	-	0.09	11.9	0.0	0.16	11.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3089)
HTH_24	PF13412.1	gi|385802339|ref|YP_005838741.1|	-	0.0018	17.6	0.4	0.003	16.9	0.3	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|385802339|ref|YP_005838741.1|	-	0.0031	17.2	0.0	0.039	13.7	0.0	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
Replic_Relax	PF13814.1	gi|385802339|ref|YP_005838741.1|	-	0.0047	16.7	0.1	0.0095	15.8	0.0	1.5	1	1	0	1	1	1	1	Replication-relaxation
TPX2	PF06886.6	gi|385802339|ref|YP_005838741.1|	-	0.051	13.6	0.6	0.41	10.7	0.0	2.5	2	1	0	2	2	2	0	Targeting	protein	for	Xklp2	(TPX2)
HTH_34	PF13601.1	gi|385802339|ref|YP_005838741.1|	-	0.052	13.5	0.7	0.094	12.7	0.2	1.7	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_45	PF14947.1	gi|385802339|ref|YP_005838741.1|	-	0.061	13.1	0.6	0.15	11.9	0.4	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix
B-block_TFIIIC	PF04182.7	gi|385802339|ref|YP_005838741.1|	-	0.14	11.9	0.8	0.23	11.3	0.1	1.7	2	0	0	2	2	2	0	B-block	binding	subunit	of	TFIIIC
Mlo	PF03094.10	gi|385802340|ref|YP_005838742.1|	-	0.051	11.6	1.8	0.059	11.4	1.3	1.0	1	0	0	1	1	1	0	Mlo	family
VKOR	PF07884.9	gi|385802340|ref|YP_005838742.1|	-	0.17	11.7	5.4	0.2	11.5	3.8	1.1	1	0	0	1	1	1	0	Vitamin	K	epoxide	reductase	family
NS3_envE	PF02723.9	gi|385802340|ref|YP_005838742.1|	-	0.45	10.4	3.0	0.63	9.9	2.1	1.3	1	0	0	1	1	1	0	Non-structural	protein	NS3/Small	envelope	protein	E
L_biotic_typeA	PF04604.8	gi|385802341|ref|YP_005838743.1|	-	0.11	12.1	0.1	0.16	11.6	0.1	1.3	1	0	0	1	1	1	0	Type-A	lantibiotic
DUF2555	PF10742.4	gi|385802341|ref|YP_005838743.1|	-	0.12	12.0	0.3	0.31	10.6	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2555)
Lipoprotein_19	PF13617.1	gi|385802344|ref|YP_005838746.1|	-	0.038	13.6	0.0	0.075	12.6	0.0	1.5	1	0	0	1	1	1	0	YnbE-like	lipoprotein
CBS	PF00571.23	gi|385802344|ref|YP_005838746.1|	-	0.059	13.1	0.0	0.13	12.1	0.0	1.5	1	0	0	1	1	1	0	CBS	domain
Mrr_cat	PF04471.7	gi|385802345|ref|YP_005838747.1|	-	1.3e-26	92.6	0.0	1.8e-26	92.2	0.0	1.2	1	0	0	1	1	1	1	Restriction	endonuclease
Mrr_cat_2	PF13156.1	gi|385802345|ref|YP_005838747.1|	-	1.4e-06	28.2	0.0	1.9e-06	27.8	0.0	1.2	1	0	0	1	1	1	1	Restriction	endonuclease
DUF262	PF03235.9	gi|385802346|ref|YP_005838748.1|	-	1.6e-27	96.9	0.2	1.6e-27	96.9	0.1	2.7	3	0	0	3	3	3	1	Protein	of	unknown	function	DUF262
AAA_4	PF04326.9	gi|385802346|ref|YP_005838748.1|	-	4.5e-20	72.0	0.2	1.2e-19	70.6	0.1	1.8	1	0	0	1	1	1	1	Divergent	AAA	domain
DUF1524	PF07510.6	gi|385802346|ref|YP_005838748.1|	-	2.6e-09	37.0	0.1	8.2e-09	35.4	0.1	1.9	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1524)
DUF2968	PF11180.3	gi|385802346|ref|YP_005838748.1|	-	0.013	14.8	0.1	0.031	13.6	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2968)
Peripla_BP_3	PF13377.1	gi|385802347|ref|YP_005838749.1|	-	0.052	13.5	0.1	4.8	7.1	0.0	2.7	2	1	1	3	3	3	0	Periplasmic	binding	protein-like	domain
DUF3080	PF11279.3	gi|385802347|ref|YP_005838749.1|	-	0.072	12.2	5.3	0.098	11.7	3.7	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3080)
Tho2	PF11262.3	gi|385802347|ref|YP_005838749.1|	-	0.095	11.7	4.0	0.15	11.0	2.8	1.4	1	0	0	1	1	1	0	Transcription	factor/nuclear	export	subunit	protein	2
DUF1515	PF07439.6	gi|385802347|ref|YP_005838749.1|	-	0.095	12.5	3.2	0.31	10.8	2.2	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1515)
PFEMP	PF03011.10	gi|385802347|ref|YP_005838749.1|	-	0.12	12.7	6.3	0.23	11.7	4.4	1.5	1	0	0	1	1	1	0	PFEMP	DBL	domain
Macoilin	PF09726.4	gi|385802347|ref|YP_005838749.1|	-	0.2	9.9	11.2	0.25	9.5	7.7	1.2	1	0	0	1	1	1	0	Transmembrane	protein
Utp11	PF03998.8	gi|385802347|ref|YP_005838749.1|	-	0.36	10.6	12.8	0.51	10.1	8.9	1.3	1	0	0	1	1	1	0	Utp11	protein
BTV_NS2	PF04514.7	gi|385802347|ref|YP_005838749.1|	-	0.45	9.3	10.8	0.53	9.1	7.5	1.2	1	0	0	1	1	1	0	Bluetongue	virus	non-structural	protein	NS2
YscO	PF07321.7	gi|385802347|ref|YP_005838749.1|	-	0.54	10.0	13.9	0.091	12.5	6.6	2.0	2	0	0	2	2	2	0	Type	III	secretion	protein	YscO
CENP-Q	PF13094.1	gi|385802347|ref|YP_005838749.1|	-	0.57	10.2	16.7	0.82	9.6	10.9	1.6	1	1	1	2	2	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
CorA	PF01544.13	gi|385802347|ref|YP_005838749.1|	-	0.58	9.1	4.7	1.1	8.2	2.9	1.6	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
Spc7	PF08317.6	gi|385802347|ref|YP_005838749.1|	-	0.69	8.5	14.1	1.1	7.8	9.5	1.4	1	1	0	1	1	1	0	Spc7	kinetochore	protein
APG6	PF04111.7	gi|385802347|ref|YP_005838749.1|	-	2	7.4	11.8	2.4	7.0	8.2	1.2	1	0	0	1	1	1	0	Autophagy	protein	Apg6
SlyX	PF04102.7	gi|385802347|ref|YP_005838749.1|	-	2.4	8.5	9.8	4	7.8	0.5	3.2	2	1	1	3	3	3	0	SlyX
DHHW	PF14286.1	gi|385802347|ref|YP_005838749.1|	-	3.2	6.9	7.8	4.2	6.5	5.4	1.2	1	0	0	1	1	1	0	DHHW	protein
EAP30	PF04157.11	gi|385802347|ref|YP_005838749.1|	-	5	6.2	10.4	12	4.9	0.4	2.6	1	1	1	2	2	2	0	EAP30/Vps36	family
DUF507	PF04368.8	gi|385802347|ref|YP_005838749.1|	-	5.9	6.4	12.9	0.92	9.1	5.4	2.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF507)
V_ATPase_I	PF01496.14	gi|385802347|ref|YP_005838749.1|	-	6.7	4.4	7.5	7.4	4.2	5.2	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
AAA_13	PF13166.1	gi|385802347|ref|YP_005838749.1|	-	7.3	4.9	17.4	5.3	5.3	8.2	2.0	1	1	1	2	2	2	0	AAA	domain
Exonuc_VII_S	PF02609.11	gi|385802348|ref|YP_005838750.1|	-	0.084	12.6	1.2	0.22	11.2	0.8	2.0	1	1	0	1	1	1	0	Exonuclease	VII	small	subunit
DUF2365	PF10157.4	gi|385802348|ref|YP_005838750.1|	-	0.091	12.6	0.4	0.21	11.4	0.3	1.6	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2365)
Peptidase_M41	PF01434.13	gi|385802348|ref|YP_005838750.1|	-	0.11	12.0	0.1	0.13	11.7	0.1	1.1	1	0	0	1	1	1	0	Peptidase	family	M41
ParBc	PF02195.13	gi|385802350|ref|YP_005838752.1|	-	2e-16	59.8	0.3	9.6e-16	57.6	0.1	2.2	3	0	0	3	3	3	1	ParB-like	nuclease	domain
DUF488	PF04343.8	gi|385802350|ref|YP_005838752.1|	-	8.7e-14	51.9	0.0	3.2e-13	50.1	0.0	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function,	DUF488
Sigma70_r4_2	PF08281.7	gi|385802350|ref|YP_005838752.1|	-	0.0083	15.5	0.0	1.7	8.1	0.0	2.9	3	0	0	3	3	3	1	Sigma-70,	region	4
DUF262	PF03235.9	gi|385802350|ref|YP_005838752.1|	-	0.085	12.8	0.8	0.21	11.5	0.6	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF262
PucR	PF07905.6	gi|385802350|ref|YP_005838752.1|	-	0.15	11.6	0.0	2.6	7.6	0.0	2.3	2	0	0	2	2	2	0	Purine	catabolism	regulatory	protein-like	family
ASCH	PF04266.9	gi|385802351|ref|YP_005838753.1|	-	0.029	14.7	0.4	0.059	13.7	0.3	1.4	1	0	0	1	1	1	0	ASCH	domain
PadR	PF03551.9	gi|385802352|ref|YP_005838754.1|	-	7.1e-12	44.9	1.5	1.2e-11	44.2	1.1	1.4	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_5	PF01022.15	gi|385802352|ref|YP_005838754.1|	-	2.7e-08	33.3	0.0	8.9e-08	31.6	0.0	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|385802352|ref|YP_005838754.1|	-	3.2e-07	30.0	0.0	5.4e-07	29.3	0.0	1.4	1	1	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|385802352|ref|YP_005838754.1|	-	7.2e-07	28.8	0.1	9.7e-07	28.4	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|385802352|ref|YP_005838754.1|	-	1.1e-05	24.7	0.0	0.0012	18.1	0.0	2.1	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.7	gi|385802352|ref|YP_005838754.1|	-	0.00034	20.2	0.0	0.00057	19.4	0.0	1.5	1	1	0	1	1	1	1	HTH	domain
PaaX	PF07848.7	gi|385802352|ref|YP_005838754.1|	-	0.00056	19.8	0.1	0.0013	18.6	0.1	1.6	1	1	1	2	2	2	1	PaaX-like	protein
HTH_27	PF13463.1	gi|385802352|ref|YP_005838754.1|	-	0.00063	20.0	0.0	0.0009	19.5	0.0	1.3	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_34	PF13601.1	gi|385802352|ref|YP_005838754.1|	-	0.0007	19.5	0.0	0.00084	19.3	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF3116	PF11313.3	gi|385802352|ref|YP_005838754.1|	-	0.0012	18.4	0.1	0.0019	17.7	0.1	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3116)
DUF2513	PF10711.4	gi|385802352|ref|YP_005838754.1|	-	0.0015	18.5	0.0	0.0019	18.2	0.0	1.1	1	0	0	1	1	1	1	Hypothetical	protein	(DUF2513)
HTH_45	PF14947.1	gi|385802352|ref|YP_005838754.1|	-	0.0054	16.5	0.5	0.011	15.5	0.1	1.6	2	0	0	2	2	2	1	Winged	helix-turn-helix
Fe_dep_repress	PF01325.14	gi|385802352|ref|YP_005838754.1|	-	0.018	14.9	0.1	0.048	13.6	0.0	1.8	2	1	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DUF4364	PF14277.1	gi|385802352|ref|YP_005838754.1|	-	0.024	14.2	0.1	0.035	13.7	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
HTH_IclR	PF09339.5	gi|385802352|ref|YP_005838754.1|	-	0.028	14.0	0.0	0.07	12.7	0.0	1.6	2	0	0	2	2	1	0	IclR	helix-turn-helix	domain
Penicillinase_R	PF03965.11	gi|385802352|ref|YP_005838754.1|	-	0.037	14.1	0.0	0.046	13.8	0.0	1.3	1	1	0	1	1	1	0	Penicillinase	repressor
YjcQ	PF09639.5	gi|385802352|ref|YP_005838754.1|	-	0.037	14.1	0.0	0.039	14.0	0.0	1.2	1	0	0	1	1	1	0	YjcQ	protein
FUR	PF01475.14	gi|385802352|ref|YP_005838754.1|	-	0.039	13.8	0.1	0.17	11.7	0.1	1.8	1	1	0	1	1	1	0	Ferric	uptake	regulator	family
TBPIP	PF07106.8	gi|385802352|ref|YP_005838754.1|	-	0.041	13.4	0.1	0.051	13.1	0.1	1.4	1	1	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
Ribosomal_S19e	PF01090.14	gi|385802352|ref|YP_005838754.1|	-	0.063	12.6	0.1	0.068	12.6	0.1	1.2	1	0	0	1	1	1	0	Ribosomal	protein	S19e
HTH_12	PF08461.5	gi|385802352|ref|YP_005838754.1|	-	0.063	13.0	0.8	0.13	12.0	0.5	1.6	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
HTH_38	PF13936.1	gi|385802352|ref|YP_005838754.1|	-	0.066	12.7	0.3	0.19	11.3	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|385802352|ref|YP_005838754.1|	-	0.089	12.4	0.0	0.12	12.1	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HTH_36	PF13730.1	gi|385802352|ref|YP_005838754.1|	-	0.092	12.8	0.0	0.15	12.2	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
AARP2CN	PF08142.7	gi|385802352|ref|YP_005838754.1|	-	0.1	12.1	0.0	0.11	12.0	0.0	1.1	1	0	0	1	1	1	0	AARP2CN	(NUC121)	domain
Mrr_N	PF14338.1	gi|385802352|ref|YP_005838754.1|	-	0.12	12.4	0.2	0.33	11.0	0.0	1.7	2	0	0	2	2	2	0	Mrr	N-terminal	domain
MarR	PF01047.17	gi|385802352|ref|YP_005838754.1|	-	0.14	11.9	0.0	0.21	11.2	0.0	1.4	1	0	0	1	1	1	0	MarR	family
N6_N4_Mtase	PF01555.13	gi|385802354|ref|YP_005838756.1|	-	5.6e-48	163.4	0.2	6.7e-48	163.1	0.1	1.0	1	0	0	1	1	1	1	DNA	methylase
Methyltransf_26	PF13659.1	gi|385802354|ref|YP_005838756.1|	-	1.8e-08	34.4	0.0	0.00054	19.9	0.0	2.2	2	0	0	2	2	2	2	Methyltransferase	domain
UPF0020	PF01170.13	gi|385802354|ref|YP_005838756.1|	-	1.1e-05	25.1	0.0	0.0023	17.5	0.0	2.3	2	0	0	2	2	2	2	Putative	RNA	methylase	family	UPF0020
7kD_coat	PF02495.12	gi|385802356|ref|YP_005838758.1|	-	0.059	12.8	0.0	0.092	12.2	0.0	1.3	1	0	0	1	1	1	0	7kD	viral	coat	protein
TBP	PF00352.16	gi|385802357|ref|YP_005838759.1|	-	9.3e-30	101.8	0.0	5.5e-16	57.7	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.3	gi|385802357|ref|YP_005838759.1|	-	5.5e-05	23.1	0.0	0.012	15.7	0.0	2.3	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
N6_Mtase	PF02384.11	gi|385802358|ref|YP_005838760.1|	-	2.8e-79	266.4	0.0	4e-79	265.9	0.0	1.1	1	0	0	1	1	1	1	N-6	DNA	Methylase
HsdM_N	PF12161.3	gi|385802358|ref|YP_005838760.1|	-	2.4e-21	76.6	0.1	2.4e-21	76.6	0.0	2.5	2	1	1	3	3	3	1	HsdM	N-terminal	domain
Methyltransf_26	PF13659.1	gi|385802358|ref|YP_005838760.1|	-	1.2e-09	38.1	0.0	2.5e-09	37.2	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|385802358|ref|YP_005838760.1|	-	4.9e-09	36.0	0.0	9.1e-09	35.1	0.0	1.4	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methylase_S	PF01420.14	gi|385802359|ref|YP_005838761.1|	-	3.9e-40	137.5	0.0	4.9e-21	75.4	0.0	2.1	2	0	0	2	2	2	2	Type	I	restriction	modification	DNA	specificity	domain
Methylase_S	PF01420.14	gi|385802360|ref|YP_005838762.1|	-	2e-24	86.4	0.0	3.9e-11	43.2	0.0	2.2	2	0	0	2	2	2	2	Type	I	restriction	modification	DNA	specificity	domain
HSDR_N	PF04313.9	gi|385802361|ref|YP_005838763.1|	-	7.7e-36	123.6	0.1	7.7e-36	123.6	0.0	2.7	3	1	1	4	4	4	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
ResIII	PF04851.10	gi|385802361|ref|YP_005838763.1|	-	2.3e-18	66.6	0.0	5.9e-18	65.3	0.0	1.7	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DUF3387	PF11867.3	gi|385802361|ref|YP_005838763.1|	-	1.6e-13	50.3	5.4	1.6e-13	50.3	3.8	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF3387)
Helicase_C	PF00271.26	gi|385802361|ref|YP_005838763.1|	-	0.012	15.4	0.0	0.046	13.5	0.0	2.0	2	0	0	2	2	2	0	Helicase	conserved	C-terminal	domain
UvrD-helicase	PF00580.16	gi|385802361|ref|YP_005838763.1|	-	0.014	14.7	0.6	0.72	9.0	0.0	3.1	2	1	0	2	2	2	0	UvrD/REP	helicase	N-terminal	domain
WGG	PF10273.4	gi|385802361|ref|YP_005838763.1|	-	0.032	14.3	3.7	0.55	10.3	0.3	3.8	3	0	0	3	3	3	0	Pre-rRNA-processing	protein	TSR2
AAA_22	PF13401.1	gi|385802361|ref|YP_005838763.1|	-	0.067	13.3	0.0	0.38	10.9	0.0	2.3	1	0	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|385802361|ref|YP_005838763.1|	-	0.39	10.1	8.7	0.97	8.8	0.0	3.9	2	2	1	3	3	3	0	AAA-like	domain
DUF45	PF01863.12	gi|385802362|ref|YP_005838764.1|	-	2e-57	194.2	1.8	2.7e-57	193.8	1.3	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF45
WLM	PF08325.5	gi|385802362|ref|YP_005838764.1|	-	6.9e-05	22.8	0.1	0.00014	21.7	0.1	1.5	1	0	0	1	1	1	1	WLM	domain
Peptidase_M64	PF09471.5	gi|385802362|ref|YP_005838764.1|	-	0.053	13.1	0.1	0.082	12.5	0.1	1.3	1	0	0	1	1	1	0	IgA	Peptidase	M64
SprT-like	PF10263.4	gi|385802362|ref|YP_005838764.1|	-	0.086	12.4	0.0	0.14	11.8	0.0	1.3	1	0	0	1	1	1	0	SprT-like	family
TBP	PF00352.16	gi|385802363|ref|YP_005838765.1|	-	6e-35	118.4	0.0	1.1e-22	79.1	0.0	2.1	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
Moulting_cycle	PF04870.11	gi|385802365|ref|YP_005838767.1|	-	0.057	12.4	0.1	0.067	12.2	0.1	1.1	1	0	0	1	1	1	0	Moulting	cycle
TMCO5	PF14992.1	gi|385802366|ref|YP_005838768.1|	-	0.002	17.2	9.2	0.0028	16.8	6.4	1.2	1	0	0	1	1	1	1	TMCO5	family
RasGAP	PF00616.14	gi|385802366|ref|YP_005838768.1|	-	0.022	14.4	1.3	0.033	13.8	0.9	1.3	1	0	0	1	1	1	0	GTPase-activator	protein	for	Ras-like	GTPase
HSBP1	PF06825.7	gi|385802366|ref|YP_005838768.1|	-	0.054	13.0	0.5	0.054	13.0	0.4	3.3	3	0	0	3	3	3	0	Heat	shock	factor	binding	protein	1
GOLGA2L5	PF15070.1	gi|385802366|ref|YP_005838768.1|	-	0.06	11.8	7.2	0.091	11.2	5.0	1.2	1	0	0	1	1	1	0	Putative	golgin	subfamily	A	member	2-like	protein	5
NPV_P10	PF05531.7	gi|385802366|ref|YP_005838768.1|	-	0.091	13.0	7.6	9.6	6.5	2.6	3.5	2	2	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
SlyX	PF04102.7	gi|385802366|ref|YP_005838768.1|	-	0.099	13.0	8.6	0.32	11.4	0.9	3.2	3	1	1	4	4	3	0	SlyX
Synaptobrevin	PF00957.16	gi|385802366|ref|YP_005838768.1|	-	0.16	11.6	6.0	1.8	8.2	1.8	2.6	1	1	1	2	2	2	0	Synaptobrevin
RRN3	PF05327.6	gi|385802366|ref|YP_005838768.1|	-	0.28	9.2	6.5	0.35	8.9	4.5	1.1	1	0	0	1	1	1	0	RNA	polymerase	I	specific	transcription	initiation	factor	RRN3
AAA_13	PF13166.1	gi|385802366|ref|YP_005838768.1|	-	0.37	9.1	11.3	1.4	7.2	4.0	2.0	1	1	1	2	2	2	0	AAA	domain
DUF768	PF05589.6	gi|385802366|ref|YP_005838768.1|	-	0.4	10.6	4.1	0.26	11.2	0.5	2.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF768)
Sigma70_ner	PF04546.8	gi|385802366|ref|YP_005838768.1|	-	0.43	10.1	12.4	0.47	10.0	7.4	1.8	2	0	0	2	2	2	0	Sigma-70,	non-essential	region
Herpes_UL6	PF01763.11	gi|385802366|ref|YP_005838768.1|	-	0.49	8.4	5.0	0.83	7.7	3.5	1.4	1	0	0	1	1	1	0	Herpesvirus	UL6	like
RNase_H2-Ydr279	PF09468.5	gi|385802366|ref|YP_005838768.1|	-	0.69	9.0	6.5	1	8.4	4.5	1.2	1	0	0	1	1	1	0	Ydr279p	protein	family	(RNase	H2	complex	component)
DUF972	PF06156.8	gi|385802366|ref|YP_005838768.1|	-	0.94	9.8	5.9	1.4	9.2	3.9	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF972)
Presenilin	PF01080.12	gi|385802366|ref|YP_005838768.1|	-	0.98	8.1	8.2	1.2	7.9	5.7	1.1	1	0	0	1	1	1	0	Presenilin
DUF2407_C	PF13373.1	gi|385802366|ref|YP_005838768.1|	-	1.1	9.1	4.7	1.9	8.4	3.3	1.4	1	0	0	1	1	1	0	DUF2407	C-terminal	domain
DUF2203	PF09969.4	gi|385802366|ref|YP_005838768.1|	-	1.2	9.4	4.6	17	5.6	3.2	2.3	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2203)
Hid1	PF12722.2	gi|385802366|ref|YP_005838768.1|	-	1.2	6.7	6.7	1.4	6.5	4.6	1.0	1	0	0	1	1	1	0	High-temperature-induced	dauer-formation	protein
HAUS6_N	PF14661.1	gi|385802366|ref|YP_005838768.1|	-	1.3	8.3	3.9	1.8	7.8	2.7	1.3	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	6	N-terminus
Atg14	PF10186.4	gi|385802366|ref|YP_005838768.1|	-	1.3	7.8	11.0	1.2	8.0	6.9	1.4	1	1	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
V_ATPase_I	PF01496.14	gi|385802366|ref|YP_005838768.1|	-	1.3	6.7	8.1	1.5	6.6	5.6	1.4	1	1	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
XhlA	PF10779.4	gi|385802366|ref|YP_005838768.1|	-	1.5	8.8	8.1	4.9	7.1	5.6	2.0	1	0	0	1	1	1	0	Haemolysin	XhlA
TMF_DNA_bd	PF12329.3	gi|385802366|ref|YP_005838768.1|	-	1.5	8.6	11.4	9.2	6.1	7.6	2.3	1	1	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
APG6	PF04111.7	gi|385802366|ref|YP_005838768.1|	-	1.6	7.6	7.4	2.2	7.2	5.1	1.1	1	0	0	1	1	1	0	Autophagy	protein	Apg6
DUF1664	PF07889.7	gi|385802366|ref|YP_005838768.1|	-	2.3	8.0	6.1	4	7.2	1.9	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Vfa1	PF08432.5	gi|385802366|ref|YP_005838768.1|	-	2.3	8.1	10.6	3.3	7.6	7.4	1.2	1	0	0	1	1	1	0	AAA-ATPase	Vps4-associated	protein	1
DivIC	PF04977.10	gi|385802366|ref|YP_005838768.1|	-	4.7	6.7	12.8	0.23	10.9	0.5	2.7	2	1	1	3	3	3	0	Septum	formation	initiator
Tom22	PF04281.8	gi|385802366|ref|YP_005838768.1|	-	7.7	6.0	14.0	27	4.2	9.7	2.0	1	1	0	1	1	1	0	Mitochondrial	import	receptor	subunit	Tom22
CCDC-167	PF15188.1	gi|385802366|ref|YP_005838768.1|	-	8	6.4	7.2	10	6.1	2.3	2.4	2	0	0	2	2	2	0	Coiled-coil	domain-containing	protein	167
TAT_signal	PF10518.4	gi|385802367|ref|YP_005838769.1|	-	0.033	14.2	0.1	0.033	14.2	0.0	1.6	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF3093	PF11292.3	gi|385802368|ref|YP_005838770.1|	-	0.12	12.1	0.1	0.18	11.5	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3093)
Pentapeptide	PF00805.17	gi|385802369|ref|YP_005838771.1|	-	2e-40	135.4	31.4	1.2e-11	43.6	1.6	3.7	1	1	3	4	4	4	4	Pentapeptide	repeats	(8	copies)
Pentapeptide_4	PF13599.1	gi|385802369|ref|YP_005838771.1|	-	4.4e-25	87.2	0.5	2.8e-12	46.2	0.1	2.1	1	1	1	2	2	2	2	Pentapeptide	repeats	(9	copies)
Pentapeptide_3	PF13576.1	gi|385802369|ref|YP_005838771.1|	-	7.4e-14	51.3	0.2	1.7e-06	27.8	0.6	3.4	1	1	1	2	2	2	2	Pentapeptide	repeats	(9	copies)
Methyltransf_12	PF08242.7	gi|385802369|ref|YP_005838771.1|	-	0.09	13.2	0.4	2.3	8.7	0.3	2.2	1	1	0	1	1	1	0	Methyltransferase	domain
Cdc6_C	PF09079.6	gi|385802370|ref|YP_005838772.1|	-	1e-18	66.8	0.3	3.4e-18	65.1	0.1	2.0	2	0	0	2	2	2	1	CDC6,	C	terminal
AAA_16	PF13191.1	gi|385802370|ref|YP_005838772.1|	-	1.5e-09	38.1	0.6	5.8e-09	36.2	0.0	2.2	2	2	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|385802370|ref|YP_005838772.1|	-	2.6e-09	37.3	0.1	1.4e-07	31.7	0.0	2.4	2	1	0	2	2	2	1	AAA	domain
NACHT	PF05729.7	gi|385802370|ref|YP_005838772.1|	-	5.6e-06	26.1	0.0	1.6e-05	24.6	0.0	1.8	2	0	0	2	2	2	1	NACHT	domain
AAA	PF00004.24	gi|385802370|ref|YP_005838772.1|	-	0.00013	22.1	0.0	0.00038	20.6	0.0	1.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RNA_helicase	PF00910.17	gi|385802370|ref|YP_005838772.1|	-	0.00064	19.8	0.0	0.0028	17.7	0.0	2.1	2	1	1	3	3	2	1	RNA	helicase
NB-ARC	PF00931.17	gi|385802370|ref|YP_005838772.1|	-	0.0014	17.5	0.0	0.002	17.0	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
DEAD	PF00270.24	gi|385802370|ref|YP_005838772.1|	-	0.0015	18.0	0.1	0.01	15.3	0.1	2.2	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
Sigma54_activat	PF00158.21	gi|385802370|ref|YP_005838772.1|	-	0.0016	17.9	0.1	0.0063	16.0	0.0	2.0	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_32	PF13654.1	gi|385802370|ref|YP_005838772.1|	-	0.0019	16.9	0.2	1.2	7.7	0.1	2.2	2	0	0	2	2	2	2	AAA	domain
DUF2036	PF09724.4	gi|385802370|ref|YP_005838772.1|	-	0.0099	15.0	0.3	0.11	11.5	0.1	2.1	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2036)
Bac_DnaA	PF00308.13	gi|385802370|ref|YP_005838772.1|	-	0.013	15.1	0.0	1.8	8.1	0.0	2.4	2	0	0	2	2	2	0	Bacterial	dnaA	protein
AAA_10	PF12846.2	gi|385802370|ref|YP_005838772.1|	-	0.014	14.8	0.1	0.13	11.6	0.0	2.4	1	1	0	1	1	1	0	AAA-like	domain
T2SE	PF00437.15	gi|385802370|ref|YP_005838772.1|	-	0.032	13.1	0.0	0.064	12.1	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
LexA_DNA_bind	PF01726.11	gi|385802370|ref|YP_005838772.1|	-	0.036	13.6	0.2	0.81	9.2	0.0	2.8	3	1	0	3	3	3	0	LexA	DNA	binding	domain
PIF1	PF05970.9	gi|385802370|ref|YP_005838772.1|	-	0.061	12.2	0.0	0.1	11.5	0.0	1.3	1	0	0	1	1	1	0	PIF1-like	helicase
HTH_24	PF13412.1	gi|385802370|ref|YP_005838772.1|	-	0.11	11.9	0.1	0.61	9.5	0.0	2.4	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Arch_ATPase	PF01637.13	gi|385802370|ref|YP_005838772.1|	-	0.11	12.1	0.0	0.24	11.0	0.0	1.6	1	1	0	1	1	1	0	Archaeal	ATPase
HTH_IclR	PF09339.5	gi|385802370|ref|YP_005838772.1|	-	0.3	10.6	1.6	1.8	8.2	0.0	2.7	3	0	0	3	3	3	0	IclR	helix-turn-helix	domain
DUF389	PF04087.9	gi|385802371|ref|YP_005838773.1|	-	0.024	14.5	3.3	0.024	14.5	2.3	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF389)
EamA	PF00892.15	gi|385802371|ref|YP_005838773.1|	-	0.065	13.2	1.7	0.073	13.1	1.2	1.1	1	0	0	1	1	1	0	EamA-like	transporter	family
Adeno_E3_CR2	PF02439.10	gi|385802371|ref|YP_005838773.1|	-	1.1	8.9	4.1	2.1	7.9	2.8	1.5	1	0	0	1	1	1	0	Adenovirus	E3	region	protein	CR2
Col_cuticle_N	PF01484.12	gi|385802371|ref|YP_005838773.1|	-	1.4	8.6	6.5	3.4	7.4	0.0	2.2	2	0	0	2	2	2	0	Nematode	cuticle	collagen	N-terminal	domain
SNF2_N	PF00176.18	gi|385802372|ref|YP_005838774.1|	-	1.5e-17	63.3	0.0	4.6e-17	61.7	0.0	1.7	1	1	0	1	1	1	1	SNF2	family	N-terminal	domain
Helicase_C	PF00271.26	gi|385802372|ref|YP_005838774.1|	-	2.2e-15	56.2	0.0	7.4e-15	54.5	0.0	1.9	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|385802372|ref|YP_005838774.1|	-	4.2e-09	36.4	0.2	3.1e-08	33.6	0.0	2.5	2	1	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|385802372|ref|YP_005838774.1|	-	3.6e-05	23.3	0.0	9.4e-05	21.9	0.0	1.7	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
RapA_C	PF12137.3	gi|385802372|ref|YP_005838774.1|	-	0.0006	18.7	0.1	0.0006	18.7	0.1	2.4	4	0	0	4	4	4	1	RNA	polymerase	recycling	family	C-terminal
PTRF_SDPR	PF15237.1	gi|385802372|ref|YP_005838774.1|	-	0.0066	15.8	0.0	0.0066	15.8	0.0	3.0	3	1	1	4	4	4	1	PTRF/SDPR	family
Phage_30_8	PF06019.6	gi|385802372|ref|YP_005838774.1|	-	0.02	14.6	0.0	0.56	9.9	0.0	2.6	2	0	0	2	2	2	0	Phage	GP30.8	protein
N6_Mtase	PF02384.11	gi|385802373|ref|YP_005838775.1|	-	5.9e-11	42.0	0.0	9.9e-05	21.5	0.0	3.6	3	0	0	3	3	3	2	N-6	DNA	Methylase
Methyltransf_26	PF13659.1	gi|385802373|ref|YP_005838775.1|	-	3e-09	36.9	0.0	1.2e-08	34.9	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
Eco57I	PF07669.6	gi|385802373|ref|YP_005838775.1|	-	4.3e-07	30.2	0.0	0.0074	16.6	0.0	2.8	2	0	0	2	2	2	2	Eco57I	restriction-modification	methylase
UPF0020	PF01170.13	gi|385802373|ref|YP_005838775.1|	-	0.026	14.0	0.0	0.31	10.6	0.0	2.2	2	0	0	2	2	2	0	Putative	RNA	methylase	family	UPF0020
DEAD	PF00270.24	gi|385802374|ref|YP_005838776.1|	-	1.2e-21	76.9	0.0	4.6e-21	75.0	0.0	2.0	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
DUF1998	PF09369.5	gi|385802374|ref|YP_005838776.1|	-	9.2e-14	51.7	1.7	2.4e-12	47.2	0.0	3.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1998)
Helicase_C	PF00271.26	gi|385802374|ref|YP_005838776.1|	-	1.8e-12	46.9	0.0	6.2e-12	45.2	0.0	1.9	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
zf-ribbon_3	PF13248.1	gi|385802374|ref|YP_005838776.1|	-	0.00018	20.6	17.6	0.052	12.7	0.3	4.7	4	1	0	4	4	4	3	zinc-ribbon	domain
DZR	PF12773.2	gi|385802374|ref|YP_005838776.1|	-	0.0062	16.3	30.3	0.029	14.1	0.6	5.3	4	1	0	4	4	4	2	Double	zinc	ribbon
RecO_N_2	PF13114.1	gi|385802374|ref|YP_005838776.1|	-	0.039	13.6	0.1	0.082	12.6	0.1	1.6	1	0	0	1	1	1	0	RecO	N	terminal
zf-tcix	PF14952.1	gi|385802374|ref|YP_005838776.1|	-	0.68	9.3	10.0	0.58	9.5	0.2	3.5	3	1	0	3	3	3	0	Putative	treble-clef,	zinc-finger,	Zn-binding
UPF0547	PF10571.4	gi|385802374|ref|YP_005838776.1|	-	0.84	9.3	16.1	0.2	11.3	0.3	4.4	4	0	0	4	4	4	0	Uncharacterised	protein	family	UPF0547
zinc_ribbon_2	PF13240.1	gi|385802374|ref|YP_005838776.1|	-	2.4	7.7	20.0	0.38	10.3	0.1	5.0	5	0	0	5	5	5	0	zinc-ribbon	domain
Auto_anti-p27	PF06677.7	gi|385802374|ref|YP_005838776.1|	-	2.9	7.7	15.7	0.18	11.6	0.4	3.7	4	0	0	4	4	4	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)