# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- GARP PF16731.5 gi|385802305|ref|YP_005838707.1| - 0.12 12.0 0.0 0.13 11.9 0.0 1.0 1 0 0 1 1 1 0 Glutamic acid/alanine-rich protein of Trypanosoma HTH_29 PF13551.6 gi|385802306|ref|YP_005838708.1| - 0.0011 18.9 0.0 0.0015 18.5 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|385802306|ref|YP_005838708.1| - 0.0059 16.4 0.0 0.0077 16.0 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|385802306|ref|YP_005838708.1| - 0.082 13.0 0.0 0.11 12.7 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain HSP33 PF01430.19 gi|385802306|ref|YP_005838708.1| - 0.1 12.0 0.0 0.11 11.9 0.0 1.0 1 0 0 1 1 1 0 Hsp33 protein DUF3244 PF11589.8 gi|385802307|ref|YP_005838709.1| - 0.02 15.0 1.0 2.1 8.5 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3244) Ldl_recept_b PF00058.17 gi|385802307|ref|YP_005838709.1| - 0.028 14.9 0.0 0.058 13.9 0.0 1.6 1 0 0 1 1 1 0 Low-density lipoprotein receptor repeat class B HTH_Tnp_ISL3 PF13542.6 gi|385802308|ref|YP_005838710.1| - 0.0039 16.6 0.0 0.64 9.5 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain of transposase family ISL3 YdaS_antitoxin PF15943.5 gi|385802308|ref|YP_005838710.1| - 0.014 15.3 0.3 0.071 13.0 0.0 2.3 2 1 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DUF746 PF05344.11 gi|385802308|ref|YP_005838710.1| - 0.03 14.2 0.0 0.087 12.7 0.0 1.7 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_28 PF13518.6 gi|385802308|ref|YP_005838710.1| - 0.14 12.3 0.0 2.1 8.6 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|385802311|ref|YP_005838713.1| - 0.031 13.9 0.0 0.057 13.0 0.0 1.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding PAS_4 PF08448.10 gi|385802313|ref|YP_005838715.1| - 4e-33 113.9 10.0 7.7e-14 51.9 0.1 4.4 4 0 0 4 4 4 4 PAS fold PAS_3 PF08447.12 gi|385802313|ref|YP_005838715.1| - 1.2e-25 89.6 2.8 6.9e-13 48.7 0.0 4.2 4 0 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|385802313|ref|YP_005838715.1| - 2.7e-25 88.6 2.7 1.9e-05 24.9 0.1 5.1 5 0 0 5 5 5 4 PAS domain Response_reg PF00072.24 gi|385802313|ref|YP_005838715.1| - 5.7e-20 71.6 0.0 1.6e-19 70.2 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|385802313|ref|YP_005838715.1| - 3.7e-18 65.6 3.2 1.5e-06 28.2 0.0 4.9 4 0 0 4 4 4 3 PAS fold HATPase_c PF02518.26 gi|385802313|ref|YP_005838715.1| - 2.1e-17 63.6 0.1 5.4e-17 62.3 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|385802313|ref|YP_005838715.1| - 4.7e-13 49.0 0.5 4.7e-13 49.0 0.5 3.5 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|385802313|ref|YP_005838715.1| - 9.8e-11 41.4 0.3 2.7e-05 24.1 0.1 3.5 4 0 0 4 4 4 2 PAS domain PAS_11 PF14598.6 gi|385802313|ref|YP_005838715.1| - 0.00059 19.9 0.0 1.3 9.2 0.0 2.8 2 0 0 2 2 2 2 PAS domain HATPase_c_3 PF13589.6 gi|385802313|ref|YP_005838715.1| - 0.055 13.3 0.0 0.19 11.6 0.0 1.9 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|385802313|ref|YP_005838715.1| - 0.091 12.7 0.3 0.83 9.6 0.3 2.6 1 1 0 1 1 1 0 GHKL domain BORCS6 PF10157.9 gi|385802313|ref|YP_005838715.1| - 0.19 11.9 1.5 0.51 10.6 1.4 1.8 1 1 0 1 1 1 0 BLOC-1-related complex sub-unit 6 Occludin_ELL PF07303.13 gi|385802313|ref|YP_005838715.1| - 2.2 9.1 6.9 1.9 9.3 0.1 3.9 4 0 0 4 4 4 0 Occludin homology domain BIV_Env PF05858.12 gi|385802314|ref|YP_005838716.1| - 0.11 10.6 0.5 0.14 10.3 0.5 1.2 1 0 0 1 1 1 0 Bovine immunodeficiency virus surface protein (SU) DUF1772 PF08592.11 gi|385802314|ref|YP_005838716.1| - 3.3 8.0 7.4 1.5 9.2 1.2 2.8 2 2 0 2 2 2 0 Domain of unknown function (DUF1772) CPSF100_C PF13299.6 gi|385802315|ref|YP_005838717.1| - 0.072 13.3 2.4 0.088 13.0 2.4 1.1 1 0 0 1 1 1 0 Cleavage and polyadenylation factor 2 C-terminal DUF3332 PF11810.8 gi|385802315|ref|YP_005838717.1| - 0.079 12.6 0.5 0.097 12.3 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3332) AAA_31 PF13614.6 gi|385802316|ref|YP_005838718.1| - 2.7e-21 76.3 0.0 4.8e-21 75.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|385802316|ref|YP_005838718.1| - 1.2e-10 41.5 0.0 1.7e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|385802316|ref|YP_005838718.1| - 7.4e-07 28.6 0.0 9.7e-07 28.2 0.0 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 gi|385802316|ref|YP_005838718.1| - 7.2e-05 22.4 0.0 0.00029 20.4 0.0 1.8 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|385802316|ref|YP_005838718.1| - 0.00037 19.9 0.0 0.022 14.1 0.0 2.2 1 1 0 2 2 2 1 ATPase MipZ Fer4_NifH PF00142.18 gi|385802316|ref|YP_005838718.1| - 0.0041 16.6 0.0 0.0074 15.8 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|385802316|ref|YP_005838718.1| - 0.011 15.2 0.0 0.025 14.1 0.0 1.5 1 1 0 1 1 1 0 Cellulose biosynthesis protein BcsQ SRP54 PF00448.22 gi|385802316|ref|YP_005838718.1| - 0.019 14.6 0.0 0.042 13.5 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain CLP1_P PF16575.5 gi|385802316|ref|YP_005838718.1| - 0.19 11.5 0.0 0.42 10.4 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop NB-ARC PF00931.22 gi|385802317|ref|YP_005838719.1| - 0.00012 21.3 0.2 0.091 11.9 0.0 2.8 3 0 0 3 3 3 2 NB-ARC domain AAA_22 PF13401.6 gi|385802317|ref|YP_005838719.1| - 0.004 17.4 0.0 0.016 15.5 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|385802317|ref|YP_005838719.1| - 0.0096 16.3 1.4 3.5 8.0 0.0 3.4 2 1 1 3 3 3 2 AAA ATPase domain Lar_N PF09861.9 gi|385802317|ref|YP_005838719.1| - 0.039 13.1 0.0 0.15 11.2 0.0 2.0 2 0 0 2 2 2 0 Lactate racemase N-terminal domain AAA_7 PF12775.7 gi|385802317|ref|YP_005838719.1| - 0.073 12.6 0.0 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region NACHT PF05729.12 gi|385802317|ref|YP_005838719.1| - 0.084 12.8 0.0 0.23 11.3 0.0 1.8 1 0 0 1 1 1 0 NACHT domain Phage_integrase PF00589.22 gi|385802318|ref|YP_005838720.1| - 1.8e-13 50.6 0.0 1.8e-12 47.4 0.0 2.2 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_5 PF13102.6 gi|385802318|ref|YP_005838720.1| - 0.00054 20.2 0.0 0.0011 19.2 0.0 1.5 1 0 0 1 1 1 1 Phage integrase SAM-like domain Hormone_3 PF00159.18 gi|385802319|ref|YP_005838721.1| - 0.08 13.0 2.2 0.14 12.2 0.4 2.1 2 0 0 2 2 2 0 Pancreatic hormone peptide Pentapeptide PF00805.22 gi|385802320|ref|YP_005838722.1| - 1.2e-140 456.2 189.8 2.6e-13 49.3 7.5 13.8 4 3 11 17 17 17 17 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|385802320|ref|YP_005838722.1| - 8.9e-69 227.6 19.2 4.4e-12 46.0 0.4 9.1 3 3 7 10 10 10 10 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|385802320|ref|YP_005838722.1| - 3.3e-51 171.2 31.6 8.2e-06 25.9 1.4 13.0 4 3 9 13 13 13 13 Pentapeptide repeats (9 copies) Peptidase_A4 PF01828.17 gi|385802320|ref|YP_005838722.1| - 0.25 10.8 4.5 12 5.3 0.1 4.4 3 3 1 4 4 4 0 Peptidase A4 family AAA_16 PF13191.6 gi|385802322|ref|YP_005838724.1| - 0.0016 18.9 0.1 0.0067 16.8 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain Glyco_hydro_38N PF01074.22 gi|385802322|ref|YP_005838724.1| - 0.009 15.4 0.3 0.38 10.1 0.1 2.6 3 0 0 3 3 3 1 Glycosyl hydrolases family 38 N-terminal domain AAA_22 PF13401.6 gi|385802322|ref|YP_005838724.1| - 0.023 15.0 1.2 1.2 9.4 0.4 3.0 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|385802322|ref|YP_005838724.1| - 0.026 14.9 0.0 0.13 12.6 0.0 2.0 1 1 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|385802322|ref|YP_005838724.1| - 0.049 13.6 0.1 0.12 12.3 0.1 1.7 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit RPW8 PF05659.11 gi|385802323|ref|YP_005838725.1| - 0.034 13.8 7.7 0.063 13.0 0.2 3.4 3 0 0 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 ParE-like_toxin PF15781.5 gi|385802323|ref|YP_005838725.1| - 0.12 12.4 0.0 0.54 10.3 0.0 2.1 1 0 0 1 1 1 0 ParE-like toxin of type II bacterial toxin-antitoxin system CK2S PF15011.6 gi|385802323|ref|YP_005838725.1| - 0.14 12.0 8.5 0.24 11.3 0.6 3.6 4 0 0 4 4 4 0 Casein Kinase 2 substrate DUF5082 PF16888.5 gi|385802323|ref|YP_005838725.1| - 0.22 11.8 0.2 0.22 11.8 0.2 4.7 4 1 0 4 4 4 0 Domain of unknown function (DUF5082) Syntaxin-6_N PF09177.11 gi|385802323|ref|YP_005838725.1| - 0.33 11.5 25.2 0.67 10.5 1.5 4.6 3 3 2 5 5 5 0 Syntaxin 6, N-terminal RFC1 PF08519.12 gi|385802323|ref|YP_005838725.1| - 0.34 11.0 3.6 0.26 11.5 0.7 2.3 2 0 0 2 2 2 0 Replication factor RFC1 C terminal domain DASH_Dam1 PF08653.10 gi|385802323|ref|YP_005838725.1| - 2.1 8.2 6.4 20 5.1 0.4 3.8 3 0 0 3 3 3 0 DASH complex subunit Dam1 DUF1664 PF07889.12 gi|385802323|ref|YP_005838725.1| - 2.3 8.3 17.2 3.6 7.6 0.6 4.3 4 0 0 4 4 4 0 Protein of unknown function (DUF1664) Nsp1_C PF05064.13 gi|385802323|ref|YP_005838725.1| - 3.9 7.3 19.1 0.84 9.5 0.3 4.3 4 0 0 4 4 4 0 Nsp1-like C-terminal region BLOC1_2 PF10046.9 gi|385802323|ref|YP_005838725.1| - 5 7.5 16.1 3.9 7.9 0.8 4.6 5 0 0 5 5 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CENP-Q PF13094.6 gi|385802323|ref|YP_005838725.1| - 7.3 6.8 11.3 1.5 9.0 2.1 3.4 2 2 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit CdiI_2 PF18593.1 gi|385802323|ref|YP_005838725.1| - 9.9 6.9 9.5 1.1 9.9 0.2 4.1 5 1 1 6 6 5 0 CdiI immunity protein Sec8_exocyst PF04048.14 gi|385802324|ref|YP_005838726.1| - 0.032 14.1 29.2 0.087 12.7 0.2 7.0 7 1 0 7 7 7 0 Sec8 exocyst complex component specific domain AAA_24 PF13479.6 gi|385802324|ref|YP_005838726.1| - 0.051 13.3 1.0 0.38 10.4 0.4 2.6 2 0 0 2 2 2 0 AAA domain Get5_C PF18514.1 gi|385802324|ref|YP_005838726.1| - 0.17 11.6 0.4 1.7 8.4 0.2 2.9 2 0 0 2 2 2 0 Get5 C-terminal domain DUF948 PF06103.11 gi|385802324|ref|YP_005838726.1| - 0.29 11.4 20.4 0.31 11.3 0.1 6.8 7 2 0 7 7 7 0 Bacterial protein of unknown function (DUF948) FRB_dom PF08771.11 gi|385802324|ref|YP_005838726.1| - 3.5 8.1 7.4 2.5 8.5 0.5 3.8 4 0 0 4 4 4 0 FKBP12-rapamycin binding domain DUF2959 PF11172.8 gi|385802324|ref|YP_005838726.1| - 6.9 6.8 22.0 0.17 12.0 1.9 4.7 3 2 1 5 5 5 0 Protein of unknown function (DUF2959) ATPase_gene1 PF09527.10 gi|385802326|ref|YP_005838728.1| - 0.14 12.4 0.3 0.14 12.4 0.3 2.0 2 0 0 2 2 2 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter AAA PF00004.29 gi|385802328|ref|YP_005838730.1| - 4.3e-13 49.8 0.0 1e-12 48.6 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|385802328|ref|YP_005838730.1| - 5.4e-12 46.4 0.0 2.3e-11 44.3 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|385802328|ref|YP_005838730.1| - 1.8e-08 34.8 0.0 5e-08 33.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.11 gi|385802328|ref|YP_005838730.1| - 4.3e-08 33.0 0.6 8.9e-08 32.0 0.2 1.8 2 0 0 2 2 1 1 CDC6, C terminal winged helix domain TniB PF05621.11 gi|385802328|ref|YP_005838730.1| - 2.1e-07 30.6 0.0 4.3e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial TniB protein DUF815 PF05673.13 gi|385802328|ref|YP_005838730.1| - 1.6e-06 27.5 0.0 4.2e-06 26.1 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF815) ATPase_2 PF01637.18 gi|385802328|ref|YP_005838730.1| - 9.1e-05 22.5 0.0 0.00019 21.4 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 gi|385802328|ref|YP_005838730.1| - 0.0019 17.9 0.0 0.0045 16.7 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_7 PF12775.7 gi|385802328|ref|YP_005838730.1| - 0.0064 16.0 0.0 0.025 14.1 0.0 2.0 2 0 0 2 2 2 1 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|385802328|ref|YP_005838730.1| - 0.0092 16.4 0.0 0.033 14.6 0.0 2.0 2 0 0 2 2 2 1 RNA helicase AAA_19 PF13245.6 gi|385802328|ref|YP_005838730.1| - 0.011 16.0 0.0 0.022 15.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|385802328|ref|YP_005838730.1| - 0.018 14.8 0.0 0.038 13.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_PrkA PF08298.11 gi|385802328|ref|YP_005838730.1| - 0.021 13.8 0.0 0.033 13.1 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain AAA_24 PF13479.6 gi|385802328|ref|YP_005838730.1| - 0.026 14.3 0.0 0.079 12.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|385802328|ref|YP_005838730.1| - 0.031 14.8 0.1 0.27 11.7 0.0 2.4 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|385802328|ref|YP_005838730.1| - 0.048 13.6 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.14 gi|385802328|ref|YP_005838730.1| - 0.052 13.5 0.0 0.35 10.9 0.0 2.3 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.27 gi|385802328|ref|YP_005838730.1| - 0.056 14.0 0.2 0.23 12.0 0.0 2.1 2 1 0 2 2 2 0 ABC transporter RsgA_GTPase PF03193.16 gi|385802328|ref|YP_005838730.1| - 0.07 13.0 0.0 0.21 11.5 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase Mg_chelatase PF01078.21 gi|385802328|ref|YP_005838730.1| - 0.11 11.8 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|385802328|ref|YP_005838730.1| - 0.12 12.2 0.4 0.54 10.0 0.0 2.2 3 0 0 3 3 3 0 IstB-like ATP binding protein MMR_HSR1 PF01926.23 gi|385802328|ref|YP_005838730.1| - 0.15 12.2 0.0 0.34 11.0 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase zinc_ribbon_2 PF13240.6 gi|385802330|ref|YP_005838732.1| - 5.5e-05 22.7 4.3 9.7e-05 22.0 4.3 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|385802330|ref|YP_005838732.1| - 0.00012 22.1 1.0 0.00018 21.5 1.0 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|385802330|ref|YP_005838732.1| - 0.00017 20.9 1.8 0.00026 20.3 1.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|385802330|ref|YP_005838732.1| - 0.062 14.1 2.0 0.096 13.4 2.0 1.3 1 0 0 1 1 1 0 zinc-ribbon family DUF4400 PF14348.6 gi|385802330|ref|YP_005838732.1| - 0.064 12.8 0.9 0.13 11.7 0.9 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4400) Nudix_N_2 PF14803.6 gi|385802330|ref|YP_005838732.1| - 0.08 12.9 2.1 9.8 6.2 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal NRDD PF13597.6 gi|385802330|ref|YP_005838732.1| - 0.12 11.1 0.4 0.15 10.8 0.4 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zinc-ribbons_6 PF07191.12 gi|385802330|ref|YP_005838732.1| - 0.13 12.2 0.4 0.2 11.7 0.4 1.2 1 0 0 1 1 1 0 zinc-ribbons zf-NADH-PPase PF09297.11 gi|385802330|ref|YP_005838732.1| - 0.15 11.8 0.8 10 5.8 0.2 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF1610 PF07754.11 gi|385802330|ref|YP_005838732.1| - 0.83 9.7 5.9 1.8 8.6 5.9 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF1610) zf_UBZ PF18439.1 gi|385802330|ref|YP_005838732.1| - 0.91 9.2 2.1 1.6 8.4 0.3 2.0 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger TF_Zn_Ribbon PF08271.12 gi|385802330|ref|YP_005838732.1| - 2.9 7.5 7.2 34 4.1 7.3 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding zf-RING_7 PF02591.15 gi|385802330|ref|YP_005838732.1| - 3 8.1 6.8 1.5 9.1 0.4 2.3 1 1 1 2 2 2 0 C4-type zinc ribbon domain zf-dskA_traR PF01258.17 gi|385802330|ref|YP_005838732.1| - 3.7 7.6 6.1 1.7 8.6 0.6 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zinc_ribbon_2 PF13240.6 gi|385802331|ref|YP_005838733.1| - 1.6e-07 30.8 5.5 2.8e-07 30.0 5.5 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|385802331|ref|YP_005838733.1| - 3.7e-05 23.6 0.9 7e-05 22.8 0.9 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|385802331|ref|YP_005838733.1| - 0.0001 21.5 2.8 0.00023 20.4 2.8 1.6 1 0 0 1 1 1 1 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|385802331|ref|YP_005838733.1| - 0.0018 18.1 2.0 0.56 10.2 0.1 2.5 2 0 0 2 2 2 2 Nudix N-terminal RNHCP PF12647.7 gi|385802331|ref|YP_005838733.1| - 0.17 11.9 1.0 0.48 10.4 1.0 1.9 1 1 0 1 1 1 0 RNHCP domain HypA PF01155.19 gi|385802331|ref|YP_005838733.1| - 0.19 11.8 0.9 0.94 9.5 0.8 2.1 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1610 PF07754.11 gi|385802331|ref|YP_005838733.1| - 0.34 10.9 10.2 1.3 9.1 10.4 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zinc_ribbon_15 PF17032.5 gi|385802331|ref|YP_005838733.1| - 0.4 11.5 5.4 0.11 13.3 2.4 1.6 2 0 0 2 2 1 0 zinc-ribbon family RNA_POL_M_15KD PF02150.16 gi|385802331|ref|YP_005838733.1| - 0.54 10.2 2.2 13 5.7 0.1 2.4 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DUF1272 PF06906.11 gi|385802331|ref|YP_005838733.1| - 0.75 9.9 2.5 1.7 8.8 2.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) TF_Zn_Ribbon PF08271.12 gi|385802331|ref|YP_005838733.1| - 5.7 6.5 7.1 36 4.0 7.1 2.3 1 1 0 1 1 1 0 TFIIB zinc-binding RPEL PF02755.15 gi|385802335|ref|YP_005838737.1| - 0.0099 15.6 2.8 0.18 11.5 0.2 2.6 2 0 0 2 2 2 2 RPEL repeat Peptidase_S49 PF01343.18 gi|385802335|ref|YP_005838737.1| - 0.042 13.8 0.0 0.056 13.4 0.0 1.2 1 0 0 1 1 1 0 Peptidase family S49 Complex1_LYR_2 PF13233.6 gi|385802335|ref|YP_005838737.1| - 0.069 13.9 0.1 0.098 13.4 0.1 1.3 1 0 0 1 1 1 0 Complex1_LYR-like NucS PF01939.16 gi|385802336|ref|YP_005838738.1| - 9.8e-07 28.3 0.0 1.6e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Endonuclease NucS MmcB-like PF06319.12 gi|385802336|ref|YP_005838738.1| - 0.011 15.4 0.1 0.019 14.6 0.1 1.3 1 0 0 1 1 1 0 DNA repair protein MmcB-like DUF3089 PF11288.8 gi|385802336|ref|YP_005838738.1| - 0.065 12.8 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3089) HTH_34 PF13601.6 gi|385802339|ref|YP_005838741.1| - 0.0081 16.3 0.2 0.017 15.3 0.2 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2513 PF10711.9 gi|385802339|ref|YP_005838741.1| - 0.026 14.8 0.1 0.063 13.6 0.1 1.6 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_20 PF12840.7 gi|385802339|ref|YP_005838741.1| - 0.029 14.4 0.0 0.26 11.4 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain DUF5071 PF16804.5 gi|385802339|ref|YP_005838741.1| - 0.041 14.1 0.0 0.45 10.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF5071) CLZ PF16526.5 gi|385802339|ref|YP_005838741.1| - 0.37 11.2 2.5 1.3 9.4 0.0 2.8 3 1 1 4 4 4 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF3040 PF11239.8 gi|385802340|ref|YP_005838742.1| - 0.13 12.6 1.6 0.17 12.2 1.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) L_biotic_typeA PF04604.13 gi|385802341|ref|YP_005838743.1| - 0.13 12.1 0.1 0.2 11.6 0.1 1.3 1 0 0 1 1 1 0 Type-A lantibiotic DUF1127 PF06568.11 gi|385802341|ref|YP_005838743.1| - 0.22 11.2 0.2 0.22 11.2 0.2 2.1 3 0 0 3 3 3 0 Domain of unknown function (DUF1127) Mrr_cat PF04471.12 gi|385802345|ref|YP_005838747.1| - 4.1e-25 88.0 0.0 5.5e-25 87.6 0.0 1.2 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat_2 PF13156.6 gi|385802345|ref|YP_005838747.1| - 6.6e-17 61.6 0.0 8.4e-17 61.3 0.0 1.1 1 0 0 1 1 1 1 Restriction endonuclease GIT_SHD PF08518.11 gi|385802345|ref|YP_005838747.1| - 0.073 12.7 0.0 0.18 11.5 0.0 1.7 1 0 0 1 1 1 0 Spa2 homology domain (SHD) of GIT DUF262 PF03235.14 gi|385802346|ref|YP_005838748.1| - 1.9e-27 96.9 0.2 1.9e-27 96.9 0.2 2.8 3 0 0 3 3 3 1 Protein of unknown function DUF262 AlbA_2 PF04326.14 gi|385802346|ref|YP_005838748.1| - 6.1e-19 68.5 0.2 1.5e-18 67.3 0.2 1.7 1 0 0 1 1 1 1 Putative DNA-binding domain DUF1524 PF07510.11 gi|385802346|ref|YP_005838748.1| - 0.0028 17.5 0.1 0.0088 15.9 0.1 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF1524) TolA_bind_tri PF16331.5 gi|385802346|ref|YP_005838748.1| - 0.0032 17.5 0.1 0.014 15.4 0.1 2.1 1 0 0 1 1 1 1 TolA binding protein trimerisation DUF2968 PF11180.8 gi|385802346|ref|YP_005838748.1| - 0.062 12.9 0.1 0.15 11.7 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) Exonuc_VII_L PF02601.15 gi|385802347|ref|YP_005838749.1| - 0.0082 15.7 8.4 0.011 15.3 8.4 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit Tho2 PF11262.8 gi|385802347|ref|YP_005838749.1| - 0.023 13.9 5.8 0.034 13.3 5.8 1.4 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 LepB_GAP_N PF18172.1 gi|385802347|ref|YP_005838749.1| - 0.056 13.3 3.6 0.053 13.4 1.7 1.8 2 0 0 2 2 2 0 LepB GAP domain N-terminal subdomain SKA1 PF07160.12 gi|385802347|ref|YP_005838749.1| - 0.079 12.8 8.9 0.12 12.2 8.9 1.3 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 1 CheZ PF04344.13 gi|385802347|ref|YP_005838749.1| - 0.11 12.4 9.0 0.13 12.2 0.1 2.3 1 1 0 2 2 2 0 Chemotaxis phosphatase, CheZ Atg14 PF10186.9 gi|385802347|ref|YP_005838749.1| - 0.11 11.5 14.6 0.11 11.5 13.8 1.4 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF1515 PF07439.11 gi|385802347|ref|YP_005838749.1| - 0.12 12.5 3.2 0.37 10.8 3.2 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1515) V_ATPase_I PF01496.19 gi|385802347|ref|YP_005838749.1| - 0.15 9.9 4.8 0.15 10.0 4.8 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Alpha-mann_mid PF09261.11 gi|385802347|ref|YP_005838749.1| - 0.3 11.2 3.3 2.2 8.5 1.6 2.5 2 1 0 2 2 2 0 Alpha mannosidase middle domain Macoilin PF09726.9 gi|385802347|ref|YP_005838749.1| - 0.41 9.2 12.9 0.49 8.9 12.9 1.1 1 0 0 1 1 1 0 Macoilin family Spc7 PF08317.11 gi|385802347|ref|YP_005838749.1| - 0.41 9.5 13.4 0.55 9.1 13.4 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein CorA PF01544.18 gi|385802347|ref|YP_005838749.1| - 0.47 9.7 6.2 0.71 9.1 5.9 1.4 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein Phage_holin_6_1 PF09682.10 gi|385802347|ref|YP_005838749.1| - 0.55 10.7 6.4 2.2 8.8 4.7 2.4 2 1 0 2 2 2 0 Bacteriophage holin of superfamily 6 (Holin_LLH) DUF507 PF04368.13 gi|385802347|ref|YP_005838749.1| - 0.64 9.9 10.8 0.97 9.3 8.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF507) ATP11 PF06644.11 gi|385802347|ref|YP_005838749.1| - 1.5 8.5 9.4 2.2 8.0 9.4 1.3 1 0 0 1 1 1 0 ATP11 protein Jnk-SapK_ap_N PF09744.9 gi|385802347|ref|YP_005838749.1| - 2.4 8.4 15.7 6.1 7.1 15.4 2.0 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 YabA PF06156.13 gi|385802347|ref|YP_005838749.1| - 8 7.2 8.5 38 5.0 7.9 2.4 2 1 0 2 2 2 0 Initiation control protein YabA TERB2 PF15101.6 gi|385802347|ref|YP_005838749.1| - 8.6 6.4 12.6 68 3.4 12.4 2.0 1 1 0 1 1 1 0 Telomere-associated protein TERB2 Apolipoprotein PF01442.18 gi|385802348|ref|YP_005838750.1| - 0.0094 15.8 0.9 0.01 15.7 0.9 1.1 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain AAA_24 PF13479.6 gi|385802348|ref|YP_005838750.1| - 0.071 12.8 0.5 0.083 12.6 0.5 1.0 1 0 0 1 1 1 0 AAA domain DUF641 PF04859.12 gi|385802348|ref|YP_005838750.1| - 0.073 13.4 1.0 0.086 13.2 1.0 1.3 1 1 0 1 1 1 0 Plant protein of unknown function (DUF641) CDH1_2_SANT_HL1 PF18375.1 gi|385802348|ref|YP_005838750.1| - 0.081 13.6 0.4 0.093 13.4 0.4 1.2 1 0 0 1 1 1 0 CDH1/2 SANT-Helical linker 1 ParBc PF02195.18 gi|385802350|ref|YP_005838752.1| - 6e-17 61.7 0.3 2.2e-16 59.9 0.1 2.1 2 0 0 2 2 2 1 ParB-like nuclease domain DUF488 PF04343.13 gi|385802350|ref|YP_005838752.1| - 1.2e-13 51.7 0.0 4.3e-13 49.9 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function, DUF488 Sigma70_r4_2 PF08281.12 gi|385802350|ref|YP_005838752.1| - 0.01 15.5 0.0 2.1 8.1 0.0 2.9 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_ParB PF17762.1 gi|385802350|ref|YP_005838752.1| - 0.046 13.5 0.0 0.11 12.3 0.0 1.7 1 0 0 1 1 1 0 HTH domain found in ParB protein SPO22 PF08631.10 gi|385802350|ref|YP_005838752.1| - 0.091 12.2 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Meiosis protein SPO22/ZIP4 like DUF262 PF03235.14 gi|385802350|ref|YP_005838752.1| - 0.098 12.8 0.9 0.24 11.5 0.9 1.7 1 1 0 1 1 1 0 Protein of unknown function DUF262 cwf21 PF08312.12 gi|385802350|ref|YP_005838752.1| - 1.3 9.2 9.0 1.9 8.7 0.3 3.3 2 1 0 2 2 2 0 cwf21 domain ASCH PF04266.14 gi|385802351|ref|YP_005838753.1| - 0.075 13.6 0.4 0.15 12.6 0.4 1.5 1 0 0 1 1 1 0 ASCH domain PadR PF03551.14 gi|385802352|ref|YP_005838754.1| - 1.2e-11 44.4 1.5 2.1e-11 43.6 1.5 1.4 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_5 PF01022.20 gi|385802352|ref|YP_005838754.1| - 3.7e-08 33.1 0.0 1.1e-07 31.6 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|385802352|ref|YP_005838754.1| - 2.3e-06 27.4 0.0 2.9e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|385802352|ref|YP_005838754.1| - 4.4e-06 26.2 0.0 1.9e-05 24.1 0.0 1.9 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|385802352|ref|YP_005838754.1| - 1.6e-05 24.9 0.0 2.8e-05 24.1 0.0 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|385802352|ref|YP_005838754.1| - 0.00039 20.3 0.0 0.00066 19.6 0.0 1.5 1 1 0 1 1 1 1 HTH domain PaaX PF07848.12 gi|385802352|ref|YP_005838754.1| - 0.00073 19.7 0.1 0.0021 18.2 0.1 1.7 1 1 1 2 2 2 1 PaaX-like protein HTH_34 PF13601.6 gi|385802352|ref|YP_005838754.1| - 0.00076 19.6 0.1 0.0011 19.1 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2513 PF10711.9 gi|385802352|ref|YP_005838754.1| - 0.0017 18.7 0.0 0.0023 18.2 0.0 1.3 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) HTH_27 PF13463.6 gi|385802352|ref|YP_005838754.1| - 0.0025 18.3 0.1 0.0033 17.9 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|385802352|ref|YP_005838754.1| - 0.0036 17.1 0.1 0.0054 16.5 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) DUF3116 PF11313.8 gi|385802352|ref|YP_005838754.1| - 0.01 15.7 0.2 0.014 15.2 0.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3116) MarR_2 PF12802.7 gi|385802352|ref|YP_005838754.1| - 0.01 15.7 0.0 0.013 15.3 0.0 1.2 1 0 0 1 1 1 0 MarR family DUF505 PF04458.12 gi|385802352|ref|YP_005838754.1| - 0.01 14.2 0.3 0.01 14.2 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) TBPIP PF07106.13 gi|385802352|ref|YP_005838754.1| - 0.019 14.9 0.3 0.062 13.2 0.1 1.8 1 1 1 2 2 2 0 TBPIP/Hop2 winged helix domain HTH_IclR PF09339.10 gi|385802352|ref|YP_005838754.1| - 0.025 14.3 0.0 0.059 13.2 0.0 1.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|385802352|ref|YP_005838754.1| - 0.031 14.5 0.0 0.078 13.2 0.0 1.8 2 1 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Penicillinase_R PF03965.16 gi|385802352|ref|YP_005838754.1| - 0.042 14.2 0.0 0.052 13.9 0.0 1.3 1 1 0 1 1 1 0 Penicillinase repressor FUR PF01475.19 gi|385802352|ref|YP_005838754.1| - 0.044 13.9 0.1 0.2 11.8 0.1 1.8 1 1 0 1 1 1 0 Ferric uptake regulator family HTH_45 PF14947.6 gi|385802352|ref|YP_005838754.1| - 0.051 13.6 0.2 0.16 12.0 0.1 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_AsnC-type PF13404.6 gi|385802352|ref|YP_005838754.1| - 0.081 12.8 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DprA_WH PF17782.1 gi|385802352|ref|YP_005838754.1| - 0.082 13.0 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 DprA winged helix domain HTH_Crp_2 PF13545.6 gi|385802352|ref|YP_005838754.1| - 0.092 12.7 0.0 0.16 12.0 0.0 1.4 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain N6_N4_Mtase PF01555.18 gi|385802354|ref|YP_005838756.1| - 6.8e-48 163.4 0.2 8.1e-48 163.1 0.2 1.0 1 0 0 1 1 1 1 DNA methylase UPF0020 PF01170.18 gi|385802354|ref|YP_005838756.1| - 0.00043 20.0 0.0 0.028 14.1 0.0 2.2 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|385802354|ref|YP_005838756.1| - 0.18 12.5 0.0 19 6.0 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain TGBp3 PF02495.17 gi|385802356|ref|YP_005838758.1| - 0.071 12.8 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Triple gene block 3 TBP PF00352.21 gi|385802357|ref|YP_005838759.1| - 3.1e-30 104.0 0.0 1.2e-15 57.2 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|385802357|ref|YP_005838759.1| - 2e-05 24.6 0.2 0.022 14.9 0.0 2.4 2 1 0 2 2 2 2 Domain of unknown function (DUF3378) N6_Mtase PF02384.16 gi|385802358|ref|YP_005838760.1| - 8.9e-79 265.0 0.0 1.2e-78 264.6 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|385802358|ref|YP_005838760.1| - 1.3e-21 77.6 1.7 4.4e-21 75.9 0.1 2.6 3 1 0 3 3 3 1 HsdM N-terminal domain UPF0020 PF01170.18 gi|385802358|ref|YP_005838760.1| - 9.1e-05 22.2 0.0 0.00022 21.0 0.0 1.6 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Nas2_N PF18265.1 gi|385802358|ref|YP_005838760.1| - 0.15 12.0 0.9 0.46 10.4 0.3 2.3 2 0 0 2 2 2 0 Nas2 N_terminal domain Cas_Cas6 PF01881.16 gi|385802358|ref|YP_005838760.1| - 0.2 12.2 0.8 1.7 9.2 0.1 2.2 2 0 0 2 2 2 0 CRISPR associated protein Cas6 Methylase_S PF01420.19 gi|385802359|ref|YP_005838761.1| - 8.6e-37 126.9 0.1 5.7e-18 65.7 0.0 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain Methylase_S PF01420.19 gi|385802360|ref|YP_005838762.1| - 1.5e-24 87.1 0.0 1.7e-12 47.9 0.0 2.2 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain SWI2_SNF2 PF18766.1 gi|385802361|ref|YP_005838763.1| - 1.1e-56 192.1 0.0 2.3e-56 191.0 0.0 1.5 1 0 0 1 1 1 1 SWI2/SNF2 ATPase HSDR_N PF04313.14 gi|385802361|ref|YP_005838763.1| - 4.7e-36 124.6 0.1 4.7e-36 124.6 0.1 2.6 3 0 0 3 3 3 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.15 gi|385802361|ref|YP_005838763.1| - 1.3e-20 74.1 0.0 3.2e-20 72.8 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF3387 PF11867.8 gi|385802361|ref|YP_005838763.1| - 3.7e-17 62.7 4.5 7.9e-17 61.6 4.5 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3387) DEAD PF00270.29 gi|385802361|ref|YP_005838763.1| - 0.00048 19.9 0.0 0.0018 18.1 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase DUF2075 PF09848.9 gi|385802361|ref|YP_005838763.1| - 0.014 14.7 0.0 0.028 13.6 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF5444 PF17519.2 gi|385802361|ref|YP_005838763.1| - 0.015 15.3 0.0 0.068 13.2 0.0 2.1 1 0 0 1 1 1 0 Family of unknown function (DUF5444) UvrD-helicase PF00580.21 gi|385802361|ref|YP_005838763.1| - 0.017 14.7 0.6 0.87 9.0 0.0 3.1 2 1 0 2 2 2 0 UvrD/REP helicase N-terminal domain DUF45 PF01863.17 gi|385802362|ref|YP_005838764.1| - 2.6e-58 197.5 1.6 3.2e-58 197.2 1.6 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF45 Peptidase_M64 PF09471.10 gi|385802362|ref|YP_005838764.1| - 0.0033 17.0 0.1 0.0039 16.8 0.1 1.2 1 0 0 1 1 1 1 IgA Peptidase M64 WLM PF08325.10 gi|385802362|ref|YP_005838764.1| - 0.0052 16.9 0.2 0.011 15.8 0.2 1.5 1 0 0 1 1 1 1 WLM domain SIMPL PF04402.14 gi|385802362|ref|YP_005838764.1| - 0.19 12.2 1.1 0.26 11.7 1.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF541) LMSTEN PF07988.12 gi|385802362|ref|YP_005838764.1| - 0.42 10.1 2.0 0.78 9.3 0.7 2.1 2 0 0 2 2 2 0 LMSTEN motif TBP PF00352.21 gi|385802363|ref|YP_005838765.1| - 1.9e-35 120.7 0.0 4.9e-21 74.5 0.0 2.1 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) Borrelia_lipo_1 PF05714.11 gi|385802365|ref|YP_005838767.1| - 0.067 13.0 0.8 0.11 12.3 0.8 1.3 1 0 0 1 1 1 0 Borrelia burgdorferi virulent strain associated lipoprotein Atg14 PF10186.9 gi|385802366|ref|YP_005838768.1| - 0.0015 17.7 8.1 0.0027 16.8 8.2 1.3 1 1 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 SlyX PF04102.12 gi|385802366|ref|YP_005838768.1| - 0.0082 16.7 6.9 0.028 15.0 1.2 2.8 1 1 1 2 2 2 1 SlyX TMCO5 PF14992.6 gi|385802366|ref|YP_005838768.1| - 0.014 15.0 5.2 0.02 14.5 5.2 1.3 1 0 0 1 1 1 0 TMCO5 family RasGAP PF00616.19 gi|385802366|ref|YP_005838768.1| - 0.046 13.4 2.8 0.07 12.8 2.8 1.2 1 0 0 1 1 1 0 GTPase-activator protein for Ras-like GTPase HSBP1 PF06825.12 gi|385802366|ref|YP_005838768.1| - 0.062 13.2 0.9 0.062 13.2 0.9 3.1 3 0 0 3 3 3 0 Heat shock factor binding protein 1 NPV_P10 PF05531.12 gi|385802366|ref|YP_005838768.1| - 0.11 13.0 7.6 12 6.5 3.8 3.5 2 2 0 2 2 2 0 Nucleopolyhedrovirus P10 protein ALMT PF11744.8 gi|385802366|ref|YP_005838768.1| - 0.2 10.5 4.1 0.25 10.1 4.1 1.1 1 0 0 1 1 1 0 Aluminium activated malate transporter DUF4407 PF14362.6 gi|385802366|ref|YP_005838768.1| - 0.22 10.9 8.1 0.28 10.5 8.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Synaptobrevin PF00957.21 gi|385802366|ref|YP_005838768.1| - 0.43 10.4 5.9 3 7.7 2.2 2.6 1 1 1 2 2 2 0 Synaptobrevin V_ATPase_I PF01496.19 gi|385802366|ref|YP_005838768.1| - 0.43 8.4 3.7 0.48 8.3 3.7 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family ABC_tran_CTD PF16326.5 gi|385802366|ref|YP_005838768.1| - 0.57 10.5 9.0 2.3 8.5 5.6 2.9 1 1 3 4 4 4 0 ABC transporter C-terminal domain DUF724 PF05266.14 gi|385802366|ref|YP_005838768.1| - 0.78 9.5 6.3 1.3 8.8 6.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DDHD PF02862.17 gi|385802366|ref|YP_005838768.1| - 0.84 9.7 3.8 1 9.5 3.8 1.2 1 0 0 1 1 1 0 DDHD domain Vfa1 PF08432.10 gi|385802366|ref|YP_005838768.1| - 1.3 9.3 8.4 1.8 8.8 8.4 1.2 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 DUF5446 PF17522.2 gi|385802366|ref|YP_005838768.1| - 1.4 9.2 6.7 2.3 8.5 0.3 2.5 1 1 1 2 2 2 0 Family of unknown function (DUF5446) RRN3 PF05327.11 gi|385802366|ref|YP_005838768.1| - 2.4 6.6 7.4 2.6 6.5 7.4 1.1 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 CPSF100_C PF13299.6 gi|385802366|ref|YP_005838768.1| - 2.6 8.2 7.5 3.9 7.6 7.5 1.2 1 0 0 1 1 1 0 Cleavage and polyadenylation factor 2 C-terminal DUF3349 PF11829.8 gi|385802366|ref|YP_005838768.1| - 2.7 8.8 7.1 14 6.5 0.0 3.0 1 1 1 3 3 3 0 Protein of unknown function (DUF3349) DNA_pol_phi PF04931.13 gi|385802366|ref|YP_005838768.1| - 3 5.8 13.6 4.3 5.3 13.6 1.2 1 0 0 1 1 1 0 DNA polymerase phi Presenilin PF01080.17 gi|385802366|ref|YP_005838768.1| - 3.2 6.4 5.4 3.6 6.2 5.4 1.1 1 0 0 1 1 1 0 Presenilin DUF2407_C PF13373.6 gi|385802366|ref|YP_005838768.1| - 3.3 7.9 7.5 5.1 7.3 7.5 1.4 1 1 0 1 1 1 0 DUF2407 C-terminal domain Hid1 PF12722.7 gi|385802366|ref|YP_005838768.1| - 4.5 5.3 6.4 5.4 5.0 6.4 1.0 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein DUF4094 PF13334.6 gi|385802366|ref|YP_005838768.1| - 9.2 6.8 8.8 0.62 10.5 1.0 2.5 2 1 1 3 3 2 0 Domain of unknown function (DUF4094) TAT_signal PF10518.9 gi|385802367|ref|YP_005838769.1| - 0.0016 18.2 0.1 0.0023 17.7 0.1 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF3093 PF11292.8 gi|385802368|ref|YP_005838770.1| - 0.022 15.0 0.1 0.034 14.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3093) Lectin_N PF03954.14 gi|385802368|ref|YP_005838770.1| - 0.049 13.4 1.1 0.097 12.4 1.1 1.5 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain Pentapeptide PF00805.22 gi|385802369|ref|YP_005838771.1| - 6.9e-47 156.6 33.7 4.8e-12 45.3 1.2 4.0 1 1 4 5 5 5 5 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|385802369|ref|YP_005838771.1| - 3.8e-22 78.2 0.1 9.2e-11 41.8 0.0 2.3 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|385802369|ref|YP_005838771.1| - 1.5e-12 47.5 7.4 1.5e-05 25.0 1.4 3.5 1 1 3 4 4 4 4 Pentapeptide repeats (9 copies) Methyltransf_12 PF08242.12 gi|385802369|ref|YP_005838771.1| - 0.09 13.5 0.4 4.8 8.0 0.1 2.2 1 1 1 2 2 2 0 Methyltransferase domain Cdc6_C PF09079.11 gi|385802370|ref|YP_005838772.1| - 6.5e-17 61.3 0.2 4.8e-16 58.5 0.1 2.4 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|385802370|ref|YP_005838772.1| - 1.1e-08 35.6 1.2 6.4e-08 33.2 0.1 2.6 2 2 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|385802370|ref|YP_005838772.1| - 1.3e-08 35.2 0.1 1.6e-07 31.7 0.0 2.3 2 1 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|385802370|ref|YP_005838772.1| - 1.8e-05 24.7 0.0 7.5e-05 22.7 0.0 2.0 3 0 0 3 3 3 1 NACHT domain AAA PF00004.29 gi|385802370|ref|YP_005838772.1| - 0.00016 22.1 0.0 0.00046 20.6 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|385802370|ref|YP_005838772.1| - 0.00078 19.8 0.0 0.0034 17.7 0.0 2.1 2 1 1 3 3 2 1 RNA helicase Sigma54_activat PF00158.26 gi|385802370|ref|YP_005838772.1| - 0.0015 18.2 0.1 0.0068 16.1 0.0 2.0 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_32 PF13654.6 gi|385802370|ref|YP_005838772.1| - 0.0017 17.3 0.2 0.72 8.6 0.1 2.2 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.22 gi|385802370|ref|YP_005838772.1| - 0.0018 17.5 0.0 0.0032 16.7 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain DEAD PF00270.29 gi|385802370|ref|YP_005838772.1| - 0.019 14.7 0.3 0.67 9.7 0.3 2.5 1 1 0 1 1 1 0 DEAD/DEAH box helicase LexA_DNA_bind PF01726.16 gi|385802370|ref|YP_005838772.1| - 0.043 13.6 0.2 0.98 9.2 0.1 2.8 3 1 0 3 3 3 0 LexA DNA binding domain Bac_DnaA PF00308.18 gi|385802370|ref|YP_005838772.1| - 0.054 13.3 0.0 5.3 6.8 0.0 2.4 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_24 PF13479.6 gi|385802370|ref|YP_005838772.1| - 0.056 13.2 0.0 0.32 10.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain Pox_D5 PF03288.16 gi|385802370|ref|YP_005838772.1| - 0.059 13.9 0.0 0.19 12.3 0.0 1.8 1 0 0 1 1 1 0 Poxvirus D5 protein-like PIF1 PF05970.14 gi|385802370|ref|YP_005838772.1| - 0.073 12.2 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase AAA_7 PF12775.7 gi|385802370|ref|YP_005838772.1| - 0.12 11.9 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region HTH_IclR PF09339.10 gi|385802370|ref|YP_005838772.1| - 0.22 11.3 1.0 1.9 8.3 0.0 2.7 3 0 0 3 3 3 0 IclR helix-turn-helix domain DUF389 PF04087.14 gi|385802371|ref|YP_005838773.1| - 0.026 14.6 3.6 0.026 14.6 3.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF389) Col_cuticle_N PF01484.17 gi|385802371|ref|YP_005838773.1| - 3.5 7.8 7.7 2.9 8.0 0.1 2.2 2 0 0 2 2 2 0 Nematode cuticle collagen N-terminal domain Helicase_C PF00271.31 gi|385802372|ref|YP_005838774.1| - 1e-20 74.1 0.0 3.4e-20 72.5 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|385802372|ref|YP_005838774.1| - 4.2e-13 48.7 0.0 8e-13 47.8 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain ResIII PF04851.15 gi|385802372|ref|YP_005838774.1| - 1.5e-10 41.3 0.0 5.5e-10 39.5 0.0 2.0 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit RapA_C PF12137.8 gi|385802372|ref|YP_005838774.1| - 0.0015 17.6 0.6 0.0015 17.6 0.6 2.5 3 1 0 3 3 3 1 RNA polymerase recycling family C-terminal DEAD PF00270.29 gi|385802372|ref|YP_005838774.1| - 0.0026 17.6 0.0 0.0068 16.2 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase Phage_30_8 PF06019.11 gi|385802372|ref|YP_005838774.1| - 0.024 14.6 0.0 0.68 9.9 0.0 2.6 2 0 0 2 2 2 0 Phage GP30.8 protein Toprim_4 PF13662.6 gi|385802372|ref|YP_005838774.1| - 0.031 14.7 0.4 26 5.4 0.0 3.4 3 0 0 3 3 3 0 Toprim domain DUF4823 PF16105.5 gi|385802372|ref|YP_005838774.1| - 0.053 13.4 0.1 0.14 12.0 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4823) Octopine_DH PF02317.17 gi|385802372|ref|YP_005838774.1| - 0.072 13.2 0.0 0.47 10.5 0.0 2.3 3 0 0 3 3 3 0 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain MctB PF11382.8 gi|385802372|ref|YP_005838774.1| - 1.7 8.3 5.7 0.59 9.8 1.2 2.3 2 0 0 2 2 2 0 Copper transport outer membrane protein, MctB AAA_11 PF13086.6 gi|385802372|ref|YP_005838774.1| - 4.4 7.0 10.3 4.8 6.9 0.1 3.3 3 0 0 3 3 3 0 AAA domain N6_Mtase PF02384.16 gi|385802373|ref|YP_005838775.1| - 4.8e-11 42.5 0.2 0.00012 21.4 0.0 3.8 4 0 0 4 4 4 2 N-6 DNA Methylase Eco57I PF07669.11 gi|385802373|ref|YP_005838775.1| - 5.2e-05 23.7 0.1 0.01 16.3 0.1 2.9 1 1 0 1 1 1 1 Eco57I restriction-modification methylase UPF0020 PF01170.18 gi|385802373|ref|YP_005838775.1| - 0.0059 16.3 0.0 0.072 12.8 0.0 2.2 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 CRA PF06589.11 gi|385802373|ref|YP_005838775.1| - 0.72 10.0 5.1 0.75 9.9 3.3 1.9 2 0 0 2 2 2 0 Circumsporozoite-related antigen (CRA) Enkurin PF13864.6 gi|385802373|ref|YP_005838775.1| - 2.8 8.4 7.0 4 7.9 0.1 3.6 3 0 0 3 3 3 0 Calmodulin-binding DEAD PF00270.29 gi|385802374|ref|YP_005838776.1| - 8.7e-24 84.2 0.0 2.7e-23 82.6 0.0 1.9 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|385802374|ref|YP_005838776.1| - 1.1e-11 45.0 0.0 4.7e-11 43.0 0.0 2.1 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DUF1998 PF09369.10 gi|385802374|ref|YP_005838776.1| - 2.2e-08 34.7 2.7 1.1e-07 32.5 0.1 3.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1998) DZR PF12773.7 gi|385802374|ref|YP_005838776.1| - 0.005 16.8 25.3 0.13 12.3 0.9 5.4 5 1 0 5 5 5 2 Double zinc ribbon MTES_1575 PF18741.1 gi|385802374|ref|YP_005838776.1| - 0.0093 16.1 0.1 0.03 14.5 0.1 1.9 1 0 0 1 1 1 1 REase_MTES_1575 IBR PF01485.21 gi|385802374|ref|YP_005838776.1| - 0.048 13.9 0.2 0.048 13.9 0.2 4.8 6 1 0 6 6 6 0 IBR domain, a half RING-finger domain Auto_anti-p27 PF06677.12 gi|385802374|ref|YP_005838776.1| - 1.2 9.4 18.6 0.058 13.6 1.1 4.1 4 0 0 4 4 4 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Cytochrom_c3_2 PF14537.6 gi|385802374|ref|YP_005838776.1| - 7.6 7.1 7.6 1.5 9.4 0.7 2.8 2 0 0 2 2 2 0 Cytochrome c3 zf-tcix PF14952.6 gi|385802374|ref|YP_005838776.1| - 10 5.9 13.0 0.7 9.5 0.4 3.5 4 0 0 4 4 4 0 Putative treble-clef, zinc-finger, Zn-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloquadratum_walsbyi_C23_uid162019/NC_017457.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloquadratum_walsbyi_C23_uid162019/NC_017457.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloquadratum_walsbyi_C23_uid162019/NC_017457.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloquadratum_walsbyi_C23_uid162019/NC_017457.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:40:19 2019 # [ok]