#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
HTH_38	PF13936.1	gi|336251561|ref|YP_004598792.1|	-	0.028	13.9	0.1	0.11	12.0	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
Pyr_excise	PF03013.9	gi|336251561|ref|YP_004598792.1|	-	0.032	14.0	0.0	0.035	13.8	0.0	1.1	1	0	0	1	1	1	0	Pyrimidine	dimer	DNA	glycosylase
TusA	PF01206.12	gi|336251561|ref|YP_004598792.1|	-	0.05	13.2	0.0	0.067	12.8	0.0	1.3	1	0	0	1	1	1	0	Sulfurtransferase	TusA
Sigma70_r4	PF04545.11	gi|336251561|ref|YP_004598792.1|	-	0.068	12.4	0.4	0.17	11.2	0.0	1.8	2	0	0	2	2	2	0	Sigma-70,	region	4
DUF3486	PF11985.3	gi|336251561|ref|YP_004598792.1|	-	0.095	12.7	0.4	0.13	12.3	0.2	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3486)
Sigma70_r4_2	PF08281.7	gi|336251561|ref|YP_004598792.1|	-	0.11	11.9	0.5	0.18	11.2	0.0	1.6	2	0	0	2	2	2	0	Sigma-70,	region	4
HisKA	PF00512.20	gi|336251561|ref|YP_004598792.1|	-	0.26	11.2	1.7	0.41	10.6	1.1	1.4	1	1	0	1	1	1	0	His	Kinase	A	(phospho-acceptor)	domain
ATG22	PF11700.3	gi|336251562|ref|YP_004598793.1|	-	0.021	13.3	0.7	0.025	13.0	0.5	1.1	1	0	0	1	1	1	0	Vacuole	effluxer	Atg22	like
A2M_N	PF01835.14	gi|336251564|ref|YP_004598795.1|	-	0.04	14.1	0.1	0.34	11.1	0.0	2.1	2	0	0	2	2	2	0	MG2	domain
SPO22	PF08631.5	gi|336251566|ref|YP_004598797.1|	-	0.11	11.5	0.0	7.3	5.5	0.0	2.2	2	0	0	2	2	2	0	Meiosis	protein	SPO22/ZIP4	like
AAA_10	PF12846.2	gi|336251567|ref|YP_004598798.1|	-	2.4e-38	132.3	0.5	2.4e-38	132.3	0.4	1.6	2	0	0	2	2	2	1	AAA-like	domain
CagE_TrbE_VirB	PF03135.9	gi|336251567|ref|YP_004598798.1|	-	0.005	16.6	0.0	0.011	15.5	0.0	1.5	1	1	0	1	1	1	1	CagE,	TrbE,	VirB	family,	component	of	type	IV	transporter	system
AAA_22	PF13401.1	gi|336251567|ref|YP_004598798.1|	-	0.011	15.8	1.9	6.4	6.9	0.0	3.2	3	1	0	3	3	3	0	AAA	domain
Zot	PF05707.7	gi|336251567|ref|YP_004598798.1|	-	0.1	12.0	0.2	0.75	9.2	0.1	2.1	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
DUF87	PF01935.12	gi|336251568|ref|YP_004598799.1|	-	7.3e-05	22.7	0.2	0.00051	19.9	0.0	2.7	2	1	0	2	2	2	1	Domain	of	unknown	function	DUF87
TrwB_AAD_bind	PF10412.4	gi|336251568|ref|YP_004598799.1|	-	0.00045	18.9	0.0	0.22	10.1	0.0	2.9	3	0	0	3	3	3	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
TraG-D_C	PF12696.2	gi|336251568|ref|YP_004598799.1|	-	0.0052	16.6	0.4	0.039	13.8	0.0	2.3	2	0	0	2	2	2	1	TraM	recognition	site	of	TraD	and	TraG
DNA_primase_S	PF01896.14	gi|336251569|ref|YP_004598800.1|	-	0.00025	20.8	0.1	0.0013	18.5	0.0	2.1	2	1	0	2	2	2	1	Eukaryotic	and	archaeal	DNA	primase	small	subunit
DUF2791	PF10923.3	gi|336251570|ref|YP_004598801.1|	-	0.0087	14.7	0.0	0.019	13.6	0.0	1.4	1	0	0	1	1	1	1	P-loop	Domain	of	unknown	function	(DUF2791)
Lar_restr_allev	PF14354.1	gi|336251573|ref|YP_004598804.1|	-	5.4	7.4	8.3	18	5.7	3.7	2.6	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
TrmB	PF01978.14	gi|336251574|ref|YP_004598805.1|	-	3.3e-10	39.5	0.3	1.2e-09	37.7	0.1	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|336251574|ref|YP_004598805.1|	-	3.2e-06	26.8	0.1	9e-06	25.4	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|336251574|ref|YP_004598805.1|	-	1.1e-05	24.7	0.0	0.00013	21.2	0.0	2.4	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|336251574|ref|YP_004598805.1|	-	3.2e-05	23.4	0.0	8.1e-05	22.2	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
F-112	PF09645.5	gi|336251574|ref|YP_004598805.1|	-	0.0008	19.2	0.0	0.99	9.3	0.0	2.2	2	0	0	2	2	2	2	F-112	protein
HTH_IclR	PF09339.5	gi|336251574|ref|YP_004598805.1|	-	0.0013	18.3	0.2	0.011	15.2	0.0	2.3	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|336251574|ref|YP_004598805.1|	-	0.0043	16.6	0.8	0.017	14.7	0.0	2.2	2	0	0	2	2	2	1	MarR	family
RP-C	PF03428.8	gi|336251574|ref|YP_004598805.1|	-	0.0076	15.7	0.0	0.013	14.9	0.0	1.4	1	0	0	1	1	1	1	Replication	protein	C	N-terminal	domain
Penicillinase_R	PF03965.11	gi|336251574|ref|YP_004598805.1|	-	0.013	15.6	0.0	0.025	14.6	0.0	1.5	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_29	PF13551.1	gi|336251574|ref|YP_004598805.1|	-	0.028	14.5	0.0	0.068	13.3	0.0	1.7	1	1	1	2	2	2	0	Winged	helix-turn	helix
PadR	PF03551.9	gi|336251574|ref|YP_004598805.1|	-	0.12	12.1	0.0	0.36	10.6	0.0	1.9	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
FeoC	PF09012.5	gi|336251574|ref|YP_004598805.1|	-	0.15	11.7	0.0	2.3	8.0	0.0	2.2	2	0	0	2	2	2	0	FeoC	like	transcriptional	regulator
Nuc_deoxyrib_tr	PF05014.10	gi|336251575|ref|YP_004598806.1|	-	0.027	14.3	0.3	0.065	13.1	0.2	1.9	1	1	0	1	1	1	0	Nucleoside	2-deoxyribosyltransferase
TrmB	PF01978.14	gi|336251576|ref|YP_004598807.1|	-	2.6e-08	33.4	0.0	5.3e-08	32.4	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|336251576|ref|YP_004598807.1|	-	1.6e-06	27.5	0.6	2.5e-05	23.7	0.0	2.6	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
Penicillinase_R	PF03965.11	gi|336251576|ref|YP_004598807.1|	-	0.0021	18.1	0.0	0.0038	17.3	0.0	1.4	1	0	0	1	1	1	1	Penicillinase	repressor
HTH_DeoR	PF08220.7	gi|336251576|ref|YP_004598807.1|	-	0.0046	16.4	0.1	0.0094	15.4	0.1	1.5	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
F-112	PF09645.5	gi|336251576|ref|YP_004598807.1|	-	0.043	13.7	0.0	0.063	13.1	0.0	1.3	1	0	0	1	1	1	0	F-112	protein
HTH_27	PF13463.1	gi|336251576|ref|YP_004598807.1|	-	0.048	13.9	0.1	0.088	13.1	0.1	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
PIN_4	PF13638.1	gi|336251577|ref|YP_004598808.1|	-	0.1	12.7	0.0	0.16	12.0	0.0	1.3	1	0	0	1	1	1	0	PIN	domain
AsnC_trans_reg	PF01037.16	gi|336251577|ref|YP_004598808.1|	-	0.11	12.2	0.5	0.7	9.6	0.0	2.2	2	0	0	2	2	2	0	AsnC	family
Peptidase_M23	PF01551.17	gi|336251577|ref|YP_004598808.1|	-	0.13	12.2	0.0	0.27	11.3	0.0	1.5	1	0	0	1	1	1	0	Peptidase	family	M23
PadR	PF03551.9	gi|336251578|ref|YP_004598809.1|	-	1e-16	60.4	1.4	1.3e-16	60.0	0.9	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.1	gi|336251578|ref|YP_004598809.1|	-	0.0053	16.5	0.1	0.0074	16.0	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.1	gi|336251578|ref|YP_004598809.1|	-	0.019	15.2	0.0	0.026	14.8	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF1495	PF07381.6	gi|336251578|ref|YP_004598809.1|	-	0.075	12.7	0.0	0.11	12.1	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
UPF0547	PF10571.4	gi|336251579|ref|YP_004598810.1|	-	6e-06	25.8	1.4	0.00048	19.7	0.0	1.5	1	1	1	2	2	2	2	Uncharacterised	protein	family	UPF0547
FANCL_C	PF11793.3	gi|336251579|ref|YP_004598810.1|	-	0.00055	19.8	0.9	0.037	13.9	0.1	2.1	2	0	0	2	2	2	1	FANCL	C-terminal	domain
Lar_restr_allev	PF14354.1	gi|336251579|ref|YP_004598810.1|	-	0.0014	18.9	1.1	0.0017	18.6	0.7	1.2	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
zf-C3HC4_3	PF13920.1	gi|336251579|ref|YP_004598810.1|	-	0.0049	16.5	0.6	0.51	10.0	0.0	2.1	2	0	0	2	2	2	1	Zinc	finger,	C3HC4	type	(RING	finger)
Zn-ribbon_8	PF09723.5	gi|336251579|ref|YP_004598810.1|	-	0.013	15.4	1.7	1.2	9.1	0.1	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
DZR	PF12773.2	gi|336251579|ref|YP_004598810.1|	-	0.031	14.0	0.7	0.051	13.3	0.5	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-H2C2_2	PF13465.1	gi|336251579|ref|YP_004598810.1|	-	0.037	14.3	0.8	3.6	8.0	0.0	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-RING_3	PF14369.1	gi|336251579|ref|YP_004598810.1|	-	0.047	13.6	1.3	2.5	8.1	0.1	2.2	2	0	0	2	2	2	0	zinc-finger
zinc-ribbons_6	PF07191.7	gi|336251579|ref|YP_004598810.1|	-	0.053	13.3	0.8	0.091	12.5	0.6	1.4	1	1	0	1	1	1	0	zinc-ribbons
NOA36	PF06524.7	gi|336251579|ref|YP_004598810.1|	-	0.069	12.3	0.1	0.069	12.3	0.1	1.0	1	0	0	1	1	1	0	NOA36	protein
Prok-RING_4	PF14447.1	gi|336251579|ref|YP_004598810.1|	-	0.084	12.4	1.4	0.25	10.9	0.1	2.0	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	4
GAGA	PF09237.6	gi|336251579|ref|YP_004598810.1|	-	0.13	11.8	2.1	0.58	9.7	0.1	2.1	1	1	1	2	2	2	0	GAGA	factor
zf-Di19	PF05605.7	gi|336251579|ref|YP_004598810.1|	-	0.14	12.2	3.5	0.35	11.0	2.4	1.6	1	1	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C4_Topoisom	PF01396.14	gi|336251579|ref|YP_004598810.1|	-	0.15	11.5	0.6	11	5.6	0.1	2.1	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
VP_N-CPKC	PF11475.3	gi|336251579|ref|YP_004598810.1|	-	0.21	11.1	1.4	0.99	8.9	0.0	2.2	2	0	0	2	2	2	0	Virion	protein	N	terminal	domain
zf-C2HC5	PF06221.8	gi|336251579|ref|YP_004598810.1|	-	0.23	11.2	1.3	0.61	9.8	0.1	1.9	1	1	1	2	2	2	0	Putative	zinc	finger	motif,	C2HC5-type
zf-LITAF-like	PF10601.4	gi|336251579|ref|YP_004598810.1|	-	0.29	11.0	2.0	4.1	7.3	0.1	2.1	1	1	1	2	2	2	0	LITAF-like	zinc	ribbon	domain
zf-ribbon_3	PF13248.1	gi|336251579|ref|YP_004598810.1|	-	0.29	10.4	3.5	1.5	8.1	2.5	1.9	1	1	1	2	2	2	0	zinc-ribbon	domain
DUF329	PF03884.9	gi|336251579|ref|YP_004598810.1|	-	0.37	10.3	2.0	7.9	6.1	0.2	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF329)
zf-RING_4	PF14570.1	gi|336251579|ref|YP_004598810.1|	-	0.59	9.7	4.0	2.1	8.0	2.8	1.8	1	1	0	1	1	1	0	RING/Ubox	like	zinc-binding	domain
zinc_ribbon_2	PF13240.1	gi|336251579|ref|YP_004598810.1|	-	0.79	9.2	4.3	6.8	6.3	3.0	2.0	1	1	0	1	1	1	0	zinc-ribbon	domain
TFIIS_C	PF01096.13	gi|336251579|ref|YP_004598810.1|	-	1.3	8.7	3.6	6.9	6.4	2.5	1.9	1	1	0	1	1	1	0	Transcription	factor	S-II	(TFIIS)
Zn_Tnp_IS1	PF03811.8	gi|336251579|ref|YP_004598810.1|	-	2.4	7.7	4.6	15	5.1	0.2	2.2	2	0	0	2	2	2	0	InsA	N-terminal	domain
Ogr_Delta	PF04606.7	gi|336251579|ref|YP_004598810.1|	-	3.8	7.2	5.5	69	3.2	4.2	2.1	1	1	1	2	2	2	0	Ogr/Delta-like	zinc	finger
zinc_ribbon_2	PF13240.1	gi|336251580|ref|YP_004598811.1|	-	1.2e-05	24.6	1.3	1.5e-05	24.2	0.9	1.1	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|336251580|ref|YP_004598811.1|	-	3.9e-05	23.3	0.9	4.3e-05	23.2	0.6	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|336251580|ref|YP_004598811.1|	-	4.2e-05	22.6	10.9	0.00058	18.9	2.8	1.8	1	1	1	2	2	2	2	zinc-ribbon	domain
NRDD	PF13597.1	gi|336251580|ref|YP_004598811.1|	-	0.0013	16.8	0.2	0.0014	16.7	0.2	1.0	1	0	0	1	1	1	1	Anaerobic	ribonucleoside-triphosphate	reductase
HypA	PF01155.14	gi|336251580|ref|YP_004598811.1|	-	0.0014	18.2	0.6	0.0016	18.1	0.4	1.1	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
UPF0547	PF10571.4	gi|336251580|ref|YP_004598811.1|	-	0.0019	17.8	1.1	0.68	9.6	0.1	2.2	2	0	0	2	2	2	2	Uncharacterised	protein	family	UPF0547
Nudix_N_2	PF14803.1	gi|336251580|ref|YP_004598811.1|	-	0.0038	16.8	0.6	1.8	8.3	0.1	2.2	1	1	1	2	2	2	2	Nudix	N-terminal
Zn_Tnp_IS1595	PF12760.2	gi|336251580|ref|YP_004598811.1|	-	0.0069	16.1	1.7	1.7	8.4	0.1	2.1	1	1	1	2	2	2	2	Transposase	zinc-ribbon	domain
Prok-RING_1	PF14446.1	gi|336251580|ref|YP_004598811.1|	-	0.0094	15.6	3.4	0.012	15.3	2.3	1.1	1	0	0	1	1	1	1	Prokaryotic	RING	finger	family	1
NOB1_Zn_bind	PF08772.6	gi|336251580|ref|YP_004598811.1|	-	0.045	13.5	0.3	0.055	13.3	0.2	1.1	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-C3HC4_3	PF13920.1	gi|336251580|ref|YP_004598811.1|	-	0.053	13.1	0.8	0.067	12.8	0.6	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-C4_Topoisom	PF01396.14	gi|336251580|ref|YP_004598811.1|	-	0.056	12.9	0.4	0.25	10.8	0.0	2.0	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Zn-ribbon_8	PF09723.5	gi|336251580|ref|YP_004598811.1|	-	0.058	13.3	5.4	2.9	7.9	4.1	2.0	1	1	1	2	2	2	0	Zinc	ribbon	domain
RecR	PF02132.10	gi|336251580|ref|YP_004598811.1|	-	0.062	12.7	1.6	0.085	12.3	1.1	1.3	1	0	0	1	1	1	0	RecR	protein
Ogr_Delta	PF04606.7	gi|336251580|ref|YP_004598811.1|	-	0.085	12.5	1.5	1.5	8.4	0.1	2.2	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
TerY-C	PF15616.1	gi|336251580|ref|YP_004598811.1|	-	0.11	12.4	0.8	0.13	12.2	0.5	1.1	1	0	0	1	1	1	0	TerY-C	metal	binding	domain
zf-ISL3	PF14690.1	gi|336251580|ref|YP_004598811.1|	-	0.11	12.4	3.0	1.8	8.6	0.0	2.1	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DUF1272	PF06906.6	gi|336251580|ref|YP_004598811.1|	-	0.13	12.1	1.1	0.15	11.9	0.8	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
zinc_ribbon_5	PF13719.1	gi|336251580|ref|YP_004598811.1|	-	0.15	11.6	0.8	10	5.8	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
YhfH	PF14149.1	gi|336251580|ref|YP_004598811.1|	-	0.16	11.7	2.4	4.5	7.1	0.1	2.1	1	1	1	2	2	2	0	YhfH-like	protein
DUF3797	PF12677.2	gi|336251580|ref|YP_004598811.1|	-	0.18	11.4	0.6	3	7.5	0.0	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
CpXC	PF14353.1	gi|336251580|ref|YP_004598811.1|	-	0.18	11.7	2.0	2.3	8.1	0.1	2.0	1	1	1	2	2	2	0	CpXC	protein
TFIIS_C	PF01096.13	gi|336251580|ref|YP_004598811.1|	-	0.2	11.2	1.4	2	8.1	0.1	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-IS66	PF13005.2	gi|336251580|ref|YP_004598811.1|	-	0.23	11.4	2.2	3.2	7.7	0.1	2.2	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
OrfB_Zn_ribbon	PF07282.6	gi|336251580|ref|YP_004598811.1|	-	0.23	11.1	4.0	1.8	8.2	1.4	2.0	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
Lar_restr_allev	PF14354.1	gi|336251580|ref|YP_004598811.1|	-	0.57	10.5	3.4	2.1	8.7	0.2	2.0	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
RNA_POL_M_15KD	PF02150.11	gi|336251580|ref|YP_004598811.1|	-	0.8	9.4	3.5	1.2	8.8	0.2	2.1	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
Rubredoxin	PF00301.15	gi|336251580|ref|YP_004598811.1|	-	0.92	9.4	4.1	46	3.9	2.8	2.1	1	1	0	1	1	1	0	Rubredoxin
zf-RING_3	PF14369.1	gi|336251580|ref|YP_004598811.1|	-	1.2	9.1	4.9	8.8	6.4	3.6	1.9	1	1	1	2	2	2	0	zinc-finger
DUF35_N	PF12172.3	gi|336251580|ref|YP_004598811.1|	-	1.5	8.8	5.1	5.8	6.9	3.5	1.8	1	1	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
LTD	PF00932.14	gi|336251583|ref|YP_004598814.1|	-	1.1e-23	83.5	5.0	1.1e-23	83.5	3.5	2.3	2	1	1	3	3	3	1	Lamin	Tail	Domain
SNase	PF00565.12	gi|336251583|ref|YP_004598814.1|	-	2.1e-18	66.5	0.0	3e-18	66.0	0.0	1.2	1	0	0	1	1	1	1	Staphylococcal	nuclease	homologue
SpoIIIAH	PF12685.2	gi|336251584|ref|YP_004598815.1|	-	0.083	12.3	0.1	0.083	12.3	0.1	2.0	2	0	0	2	2	2	0	SpoIIIAH-like	protein
tRNA_anti-codon	PF01336.20	gi|336251585|ref|YP_004598816.1|	-	7.5e-06	25.7	0.0	1.3e-05	24.8	0.0	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
S-AdoMet_synt_N	PF00438.15	gi|336251585|ref|YP_004598816.1|	-	0.037	14.2	0.2	0.15	12.3	0.0	1.9	2	0	0	2	2	2	0	S-adenosylmethionine	synthetase,	N-terminal	domain
BEX	PF04538.7	gi|336251585|ref|YP_004598816.1|	-	0.76	10.0	4.7	1.1	9.5	2.5	1.8	1	1	1	2	2	2	0	Brain	expressed	X-linked	like	family
HNH	PF01844.18	gi|336251586|ref|YP_004598817.1|	-	0.00046	19.9	1.9	0.0059	16.4	0.2	2.6	2	0	0	2	2	2	1	HNH	endonuclease
zf-C2H2_6	PF13912.1	gi|336251586|ref|YP_004598817.1|	-	0.0032	17.3	0.3	0.0073	16.1	0.2	1.6	1	0	0	1	1	1	1	C2H2-type	zinc	finger
HNH_2	PF13391.1	gi|336251586|ref|YP_004598817.1|	-	0.0058	16.3	0.1	0.016	14.9	0.1	1.8	1	0	0	1	1	1	1	HNH	endonuclease
zf-C2H2_jaz	PF12171.3	gi|336251586|ref|YP_004598817.1|	-	0.011	15.8	0.7	0.03	14.4	0.0	2.2	3	0	0	3	3	3	0	Zinc-finger	double-stranded	RNA-binding
zf-C2H2	PF00096.21	gi|336251586|ref|YP_004598817.1|	-	0.088	13.1	0.8	0.27	11.6	0.0	2.3	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
Sigma70_r3	PF04539.11	gi|336251586|ref|YP_004598817.1|	-	0.12	12.2	0.4	4.2	7.3	0.0	2.5	2	0	0	2	2	2	0	Sigma-70	region	3
ThiF	PF00899.16	gi|336251587|ref|YP_004598818.1|	-	3.4e-19	69.0	0.1	5.1e-19	68.4	0.1	1.2	1	0	0	1	1	1	1	ThiF	family
Prok-JAB	PF14464.1	gi|336251587|ref|YP_004598818.1|	-	0.00056	19.4	0.1	0.0012	18.4	0.1	1.5	1	0	0	1	1	1	1	Prokaryotic	homologs	of	the	JAB	domain
3HCDH_N	PF02737.13	gi|336251587|ref|YP_004598818.1|	-	0.14	11.8	0.2	0.27	10.8	0.1	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.12	gi|336251587|ref|YP_004598818.1|	-	0.38	11.2	1.6	11	6.4	1.1	2.5	1	1	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
DUF1664	PF07889.7	gi|336251589|ref|YP_004598820.1|	-	0.022	14.5	2.2	0.22	11.3	0.3	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Multi_ubiq	PF14452.1	gi|336251589|ref|YP_004598820.1|	-	0.041	13.8	0.2	0.11	12.5	0.2	1.8	1	1	0	1	1	1	0	Multiubiquitin
Med9	PF07544.8	gi|336251589|ref|YP_004598820.1|	-	0.29	10.8	4.6	9.1	6.1	0.2	3.1	1	1	1	3	3	3	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Syntaxin-6_N	PF09177.6	gi|336251589|ref|YP_004598820.1|	-	0.53	10.7	5.9	25	5.3	1.2	3.7	1	1	2	3	3	3	0	Syntaxin	6,	N-terminal
NPV_P10	PF05531.7	gi|336251589|ref|YP_004598820.1|	-	1	9.6	5.2	5	7.4	2.5	2.6	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
Radical_SAM	PF04055.16	gi|336251591|ref|YP_004598822.1|	-	3.1e-08	33.9	0.4	6e-07	29.7	0.3	2.8	1	1	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|336251591|ref|YP_004598822.1|	-	0.064	13.2	0.1	0.22	11.5	0.0	1.9	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|336251591|ref|YP_004598822.1|	-	0.067	13.3	0.2	0.17	12.0	0.1	1.6	1	0	0	1	1	1	0	4Fe-4S	single	cluster	domain
Radical_SAM	PF04055.16	gi|336251592|ref|YP_004598823.1|	-	1.2e-08	35.2	0.0	4.1e-08	33.5	0.0	1.9	2	1	0	2	2	2	1	Radical	SAM	superfamily
ArfGap	PF01412.13	gi|336251592|ref|YP_004598823.1|	-	0.099	12.4	0.2	0.22	11.3	0.1	1.5	1	0	0	1	1	1	0	Putative	GTPase	activating	protein	for	Arf
TPR_12	PF13424.1	gi|336251595|ref|YP_004598826.1|	-	0.00047	20.0	0.5	0.04	13.8	0.0	2.3	2	0	0	2	2	2	2	Tetratricopeptide	repeat
Imm29	PF15575.1	gi|336251595|ref|YP_004598826.1|	-	0.018	14.6	0.7	0.025	14.1	0.5	1.2	1	0	0	1	1	1	0	Immunity	protein	29
TAT_signal	PF10518.4	gi|336251599|ref|YP_004598830.1|	-	6.3	7.0	7.0	71	3.7	4.8	2.3	1	1	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Reprolysin_3	PF13582.1	gi|336251600|ref|YP_004598831.1|	-	0.06	13.8	2.1	0.085	13.3	0.3	1.9	1	1	1	2	2	2	0	Metallo-peptidase	family	M12B	Reprolysin-like
LRRNT_2	PF08263.7	gi|336251600|ref|YP_004598831.1|	-	2.1	8.3	5.1	3.4	7.7	0.0	2.5	2	0	0	2	2	2	0	Leucine	rich	repeat	N-terminal	domain
Trypan_PARP	PF05887.6	gi|336251601|ref|YP_004598832.1|	-	0.24	11.2	2.5	0.41	10.4	1.7	1.4	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
Herpes_LMP1	PF05297.6	gi|336251601|ref|YP_004598832.1|	-	0.43	9.4	2.9	0.48	9.2	2.0	1.1	1	0	0	1	1	1	0	Herpesvirus	latent	membrane	protein	1	(LMP1)
TrmB	PF01978.14	gi|336251602|ref|YP_004598833.1|	-	0.0011	18.6	0.0	0.015	15.0	0.0	2.2	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.1	gi|336251602|ref|YP_004598833.1|	-	0.01	15.5	0.0	0.02	14.6	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_45	PF14947.1	gi|336251602|ref|YP_004598833.1|	-	0.036	13.8	0.0	0.061	13.1	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix
SWIM	PF04434.12	gi|336251603|ref|YP_004598834.1|	-	0.0024	17.2	0.3	0.0059	16.0	0.2	1.6	1	1	0	1	1	1	1	SWIM	zinc	finger
ComA	PF02679.10	gi|336251604|ref|YP_004598835.1|	-	2.9e-75	252.4	0.0	3.3e-75	252.2	0.0	1.0	1	0	0	1	1	1	1	(2R)-phospho-3-sulfolactate	synthase	(ComA)
Vinculin	PF01044.14	gi|336251604|ref|YP_004598835.1|	-	0.092	10.7	0.0	0.11	10.4	0.0	1.0	1	0	0	1	1	1	0	Vinculin	family
MmgE_PrpD	PF03972.9	gi|336251605|ref|YP_004598836.1|	-	5e-103	344.6	1.4	6.1e-103	344.3	1.0	1.0	1	0	0	1	1	1	1	MmgE/PrpD	family
L_biotic_typeA	PF04604.8	gi|336251605|ref|YP_004598836.1|	-	4.9	6.8	4.9	13	5.5	0.6	3.3	3	0	0	3	3	3	0	Type-A	lantibiotic
TFIIB	PF00382.14	gi|336251606|ref|YP_004598837.1|	-	7.6e-28	96.1	0.1	1.2e-13	50.6	0.1	2.5	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|336251606|ref|YP_004598837.1|	-	3.3e-08	32.7	0.4	6e-08	31.8	0.2	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
FYVE	PF01363.16	gi|336251606|ref|YP_004598837.1|	-	4.2e-05	23.3	0.1	9.1e-05	22.2	0.1	1.6	1	0	0	1	1	1	1	FYVE	zinc	finger
zinc-ribbons_6	PF07191.7	gi|336251606|ref|YP_004598837.1|	-	0.015	15.1	0.7	0.015	15.1	0.5	1.8	2	0	0	2	2	2	0	zinc-ribbons
DZR	PF12773.2	gi|336251606|ref|YP_004598837.1|	-	0.11	12.3	1.2	0.26	11.1	0.8	1.6	1	0	0	1	1	1	0	Double	zinc	ribbon
DnaJ_CXXCXGXG	PF00684.14	gi|336251606|ref|YP_004598837.1|	-	0.12	12.4	6.2	0.46	10.5	1.4	2.5	2	0	0	2	2	2	0	DnaJ	central	domain
Cyclin_C	PF02984.14	gi|336251606|ref|YP_004598837.1|	-	0.15	11.9	0.3	7.5	6.5	0.1	2.2	1	1	0	2	2	2	0	Cyclin,	C-terminal	domain
OrfB_Zn_ribbon	PF07282.6	gi|336251606|ref|YP_004598837.1|	-	0.23	11.1	1.5	0.69	9.6	1.0	1.8	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
HypA	PF01155.14	gi|336251606|ref|YP_004598837.1|	-	0.53	9.9	3.8	0.71	9.5	0.5	2.2	2	0	0	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
Stc1	PF12898.2	gi|336251606|ref|YP_004598837.1|	-	1.7	8.7	5.9	0.57	10.2	1.4	2.1	2	0	0	2	2	2	0	Stc1	domain
Fic	PF02661.13	gi|336251607|ref|YP_004598838.1|	-	3.8e-18	65.9	0.0	1.7e-17	63.8	0.0	2.1	3	0	0	3	3	3	1	Fic/DOC	family
Fic_N	PF13784.1	gi|336251607|ref|YP_004598838.1|	-	1.9e-12	46.8	0.0	3.3e-12	46.0	0.0	1.4	1	0	0	1	1	1	1	Fic/DOC	family	N-terminal
TrmB	PF01978.14	gi|336251607|ref|YP_004598838.1|	-	2.6e-05	23.8	0.1	0.00017	21.2	0.0	2.1	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.7	gi|336251607|ref|YP_004598838.1|	-	3.1e-05	23.5	0.0	6.9e-05	22.4	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
DUF4172	PF13776.1	gi|336251607|ref|YP_004598838.1|	-	0.0091	16.0	0.1	0.092	12.8	0.0	2.4	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF4172)
GntR	PF00392.16	gi|336251607|ref|YP_004598838.1|	-	0.013	14.9	0.0	0.06	12.7	0.0	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
MarR_2	PF12802.2	gi|336251607|ref|YP_004598838.1|	-	0.047	13.3	0.0	0.095	12.3	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_20	PF12840.2	gi|336251607|ref|YP_004598838.1|	-	0.054	13.2	0.0	0.13	12.0	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
zf-RanBP	PF00641.13	gi|336251609|ref|YP_004598840.1|	-	0.062	12.4	6.2	0.92	8.6	0.1	2.7	2	1	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
zinc_ribbon_2	PF13240.1	gi|336251609|ref|YP_004598840.1|	-	0.074	12.5	0.6	0.074	12.5	0.4	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-BED	PF02892.10	gi|336251609|ref|YP_004598840.1|	-	1	9.1	9.9	1.7	8.4	0.1	2.7	3	0	0	3	3	3	0	BED	zinc	finger
DZR	PF12773.2	gi|336251609|ref|YP_004598840.1|	-	8.2	6.3	12.3	0.22	11.3	0.6	2.7	2	1	0	2	2	2	0	Double	zinc	ribbon
HATPase_c	PF02518.21	gi|336251611|ref|YP_004598842.1|	-	1.2e-29	102.3	0.0	3e-29	100.9	0.0	1.7	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.1	gi|336251611|ref|YP_004598842.1|	-	5.4e-14	52.4	0.0	1.1e-13	51.3	0.0	1.6	1	0	0	1	1	1	1	PAS	domain
HisKA	PF00512.20	gi|336251611|ref|YP_004598842.1|	-	1e-12	47.8	3.6	5.1e-12	45.6	0.4	2.6	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.5	gi|336251611|ref|YP_004598842.1|	-	2.2e-11	43.7	0.0	5.3e-11	42.5	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
PAS_3	PF08447.6	gi|336251611|ref|YP_004598842.1|	-	9.6e-11	41.6	0.0	2.5e-09	37.0	0.0	2.5	2	0	0	2	2	2	1	PAS	fold
PAS	PF00989.19	gi|336251611|ref|YP_004598842.1|	-	3.9e-08	33.0	0.0	2.9e-07	30.2	0.0	2.3	2	0	0	2	2	2	1	PAS	fold
HATPase_c_5	PF14501.1	gi|336251611|ref|YP_004598842.1|	-	1.5e-07	30.9	0.0	3.1e-07	30.0	0.0	1.4	1	0	0	1	1	1	1	GHKL	domain
HATPase_c_2	PF13581.1	gi|336251611|ref|YP_004598842.1|	-	0.00088	19.0	0.1	0.0017	18.1	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_8	PF13188.1	gi|336251611|ref|YP_004598842.1|	-	0.0018	18.1	0.1	0.012	15.5	0.0	2.4	2	0	0	2	2	2	1	PAS	domain
Pup	PF05639.6	gi|336251611|ref|YP_004598842.1|	-	0.0024	18.3	0.7	0.0024	18.3	0.5	2.7	2	1	1	3	3	3	1	Pup-like	protein
IncA	PF04156.9	gi|336251611|ref|YP_004598842.1|	-	0.07	12.7	2.0	1.1	8.7	0.0	2.4	2	0	0	2	2	2	0	IncA	protein
HATPase_c_3	PF13589.1	gi|336251611|ref|YP_004598842.1|	-	0.1	12.2	0.0	0.23	11.0	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF4131	PF13567.1	gi|336251611|ref|YP_004598842.1|	-	0.17	11.3	0.4	11	5.3	0.0	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4131)
VIT1	PF01988.14	gi|336251611|ref|YP_004598842.1|	-	0.17	11.3	0.3	0.49	9.8	0.0	1.9	2	0	0	2	2	2	0	VIT	family
Neurensin	PF14927.1	gi|336251611|ref|YP_004598842.1|	-	0.19	11.0	1.1	0.61	9.4	0.2	2.1	2	1	0	2	2	2	0	Neurensin
bZIP_2	PF07716.10	gi|336251611|ref|YP_004598842.1|	-	1.8	8.4	8.0	0.98	9.2	1.5	2.6	2	0	0	2	2	2	0	Basic	region	leucine	zipper
TFIIS_C	PF01096.13	gi|336251612|ref|YP_004598843.1|	-	1.8e-06	27.4	1.6	3.1e-06	26.7	1.1	1.4	1	0	0	1	1	1	1	Transcription	factor	S-II	(TFIIS)
T4_baseplate	PF12322.3	gi|336251612|ref|YP_004598843.1|	-	0.075	12.2	0.2	0.14	11.4	0.0	1.5	2	0	0	2	2	2	0	T4	bacteriophage	base	plate	protein
MerR-DNA-bind	PF09278.6	gi|336251612|ref|YP_004598843.1|	-	0.087	13.2	0.9	0.11	12.8	0.1	1.6	2	0	0	2	2	2	0	MerR,	DNA	binding
DUF3797	PF12677.2	gi|336251612|ref|YP_004598843.1|	-	2	8.0	5.4	21	4.8	3.7	2.1	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3797)
GIT_SHD	PF08518.6	gi|336251613|ref|YP_004598844.1|	-	0.2	11.0	1.3	0.27	10.6	0.9	1.2	1	0	0	1	1	1	0	Spa2	homology	domain	(SHD)	of	GIT
YvrJ	PF12841.2	gi|336251615|ref|YP_004598846.1|	-	0.12	11.7	0.5	0.29	10.4	0.1	1.7	2	0	0	2	2	2	0	YvrJ	protein	family
PDDEXK_1	PF12705.2	gi|336251615|ref|YP_004598846.1|	-	0.13	11.5	0.7	0.55	9.5	0.3	1.5	1	1	1	2	2	2	0	PD-(D/E)XK	nuclease	superfamily
OrfB_Zn_ribbon	PF07282.6	gi|336251616|ref|YP_004598847.1|	-	0.034	13.7	0.1	0.063	12.9	0.1	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn-ribbon_8	PF09723.5	gi|336251616|ref|YP_004598847.1|	-	0.072	13.0	1.7	9.4	6.2	0.0	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
DUF3797	PF12677.2	gi|336251616|ref|YP_004598847.1|	-	0.17	11.5	1.5	3.5	7.3	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3797)
DZR	PF12773.2	gi|336251617|ref|YP_004598848.1|	-	0.013	15.2	1.0	0.029	14.1	0.7	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|336251617|ref|YP_004598848.1|	-	0.016	14.6	1.3	3.2	7.3	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF2318	PF10080.4	gi|336251617|ref|YP_004598848.1|	-	0.021	14.6	0.1	0.027	14.2	0.1	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
Nudix_N_2	PF14803.1	gi|336251617|ref|YP_004598848.1|	-	0.028	14.0	2.3	1.3	8.7	0.1	2.5	2	0	0	2	2	2	0	Nudix	N-terminal
Lar_restr_allev	PF14354.1	gi|336251617|ref|YP_004598848.1|	-	0.048	13.9	3.5	0.14	12.5	2.4	1.7	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf-ribbon_3	PF13248.1	gi|336251617|ref|YP_004598848.1|	-	0.049	12.8	4.5	1.7	7.9	0.4	2.3	1	1	2	3	3	3	0	zinc-ribbon	domain
GFA	PF04828.9	gi|336251617|ref|YP_004598848.1|	-	0.05	13.5	1.8	1.5	8.7	0.2	2.2	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
C1_1	PF00130.17	gi|336251617|ref|YP_004598848.1|	-	0.1	12.3	1.1	0.17	11.6	0.8	1.3	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DRP	PF06044.7	gi|336251617|ref|YP_004598848.1|	-	0.14	11.1	1.0	0.27	10.1	0.5	1.5	1	1	1	2	2	2	0	Dam-replacing	family
UPF0547	PF10571.4	gi|336251617|ref|YP_004598848.1|	-	0.21	11.3	1.8	0.94	9.2	1.2	1.9	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
DNA_ligase_ZBD	PF03119.11	gi|336251617|ref|YP_004598848.1|	-	5.6	6.7	6.5	1	9.1	0.3	2.6	3	0	0	3	3	3	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Mrr_cat	PF04471.7	gi|336251620|ref|YP_004598851.1|	-	7.2e-28	96.7	0.0	1.3e-27	95.8	0.0	1.4	1	0	0	1	1	1	1	Restriction	endonuclease
zf-ribbon_3	PF13248.1	gi|336251620|ref|YP_004598851.1|	-	0.0045	16.1	2.3	0.0045	16.1	1.6	1.8	2	0	0	2	2	2	1	zinc-ribbon	domain
Siva	PF05458.7	gi|336251620|ref|YP_004598851.1|	-	0.02	14.4	2.0	0.03	13.8	1.4	1.3	1	0	0	1	1	1	0	Cd27	binding	protein	(Siva)
DZR	PF12773.2	gi|336251620|ref|YP_004598851.1|	-	0.022	14.5	1.9	0.022	14.5	1.3	1.9	1	1	0	1	1	1	0	Double	zinc	ribbon
NOB1_Zn_bind	PF08772.6	gi|336251620|ref|YP_004598851.1|	-	0.29	10.9	2.7	0.78	9.6	1.9	1.7	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zinc_ribbon_2	PF13240.1	gi|336251620|ref|YP_004598851.1|	-	1.4	8.5	6.0	0.48	9.9	1.9	2.0	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF164	PF02591.10	gi|336251620|ref|YP_004598851.1|	-	7.8	6.4	6.9	9.6	6.1	0.1	3.4	2	1	1	3	3	3	0	Putative	zinc	ribbon	domain
HNH_3	PF13392.1	gi|336251621|ref|YP_004598852.1|	-	6e-14	51.1	0.4	1.1e-13	50.3	0.3	1.5	1	0	0	1	1	1	1	HNH	endonuclease
HTH_23	PF13384.1	gi|336251621|ref|YP_004598852.1|	-	3e-06	26.6	0.0	5.6e-06	25.8	0.0	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_38	PF13936.1	gi|336251621|ref|YP_004598852.1|	-	4.6e-05	22.8	0.0	8.8e-05	21.9	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_28	PF13518.1	gi|336251621|ref|YP_004598852.1|	-	0.00014	21.7	0.4	0.00032	20.6	0.1	1.8	2	0	0	2	2	1	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.7	gi|336251621|ref|YP_004598852.1|	-	0.00019	20.8	0.0	0.00029	20.2	0.0	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
Phage_terminase	PF10668.4	gi|336251621|ref|YP_004598852.1|	-	0.00046	19.9	0.0	0.00098	18.8	0.0	1.6	1	0	0	1	1	1	1	Phage	terminase	small	subunit
Sigma70_r4	PF04545.11	gi|336251621|ref|YP_004598852.1|	-	0.0012	18.1	0.0	0.0023	17.2	0.0	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
Terminase_5	PF06056.7	gi|336251621|ref|YP_004598852.1|	-	0.0014	18.1	0.1	0.0026	17.2	0.0	1.4	1	0	0	1	1	1	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_24	PF13412.1	gi|336251621|ref|YP_004598852.1|	-	0.0024	17.2	0.0	0.0046	16.3	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|336251621|ref|YP_004598852.1|	-	0.0042	16.7	0.0	0.0078	15.8	0.0	1.4	1	0	0	1	1	1	1	MarR	family
GcrA	PF07750.6	gi|336251621|ref|YP_004598852.1|	-	0.0062	16.7	0.0	0.0078	16.4	0.0	1.2	1	0	0	1	1	1	1	GcrA	cell	cycle	regulator
HTH_11	PF08279.7	gi|336251621|ref|YP_004598852.1|	-	0.0068	16.0	0.0	0.011	15.3	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_17	PF12728.2	gi|336251621|ref|YP_004598852.1|	-	0.009	16.2	0.0	0.017	15.3	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.17	gi|336251621|ref|YP_004598852.1|	-	0.0095	15.7	0.0	0.02	14.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix
DUF746	PF05344.6	gi|336251621|ref|YP_004598852.1|	-	0.0098	15.3	0.0	0.021	14.3	0.0	1.5	1	0	0	1	1	1	1	Domain	of	Unknown	Function	(DUF746)
HTH_29	PF13551.1	gi|336251621|ref|YP_004598852.1|	-	0.011	15.8	0.1	0.023	14.8	0.0	1.5	2	0	0	2	2	1	0	Winged	helix-turn	helix
MarR	PF01047.17	gi|336251621|ref|YP_004598852.1|	-	0.011	15.4	0.0	0.021	14.4	0.0	1.4	1	0	0	1	1	1	0	MarR	family
P22_Cro	PF14549.1	gi|336251621|ref|YP_004598852.1|	-	0.021	14.5	0.0	0.035	13.8	0.0	1.3	1	0	0	1	1	1	0	DNA-binding	transcriptional	regulator	Cro
MerR_1	PF13411.1	gi|336251621|ref|YP_004598852.1|	-	0.035	13.8	0.0	0.07	12.8	0.0	1.5	1	0	0	1	1	1	0	MerR	HTH	family	regulatory	protein
UPF0122	PF04297.9	gi|336251621|ref|YP_004598852.1|	-	0.037	14.0	0.0	0.062	13.3	0.0	1.3	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
DUF1323	PF07037.6	gi|336251621|ref|YP_004598852.1|	-	0.048	13.8	0.0	0.094	12.8	0.0	1.5	1	0	0	1	1	1	0	Putative	transcription	regulator	(DUF1323)
HTH_31	PF13560.1	gi|336251621|ref|YP_004598852.1|	-	0.062	13.5	0.2	0.14	12.3	0.0	1.6	2	0	0	2	2	1	0	Helix-turn-helix	domain
GerE	PF00196.14	gi|336251621|ref|YP_004598852.1|	-	0.063	12.6	0.0	0.11	11.8	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_30	PF13556.1	gi|336251621|ref|YP_004598852.1|	-	0.073	12.6	0.0	2.4	7.8	0.0	2.7	3	0	0	3	3	3	0	PucR	C-terminal	helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|336251621|ref|YP_004598852.1|	-	0.12	11.9	0.0	0.25	10.9	0.0	1.6	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Crp	PF00325.15	gi|336251621|ref|YP_004598852.1|	-	0.12	11.8	0.0	0.18	11.2	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	crp	family
Peptidase_S15	PF02129.13	gi|336251621|ref|YP_004598852.1|	-	0.13	11.7	0.0	0.15	11.4	0.0	1.2	1	0	0	1	1	1	0	X-Pro	dipeptidyl-peptidase	(S15	family)
HTH_20	PF12840.2	gi|336251621|ref|YP_004598852.1|	-	0.13	12.0	0.0	0.23	11.2	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
TroA	PF01297.12	gi|336251622|ref|YP_004598853.1|	-	2.6e-43	148.1	0.0	3.4e-43	147.7	0.0	1.1	1	0	0	1	1	1	1	Periplasmic	solute	binding	protein	family
TAT_signal	PF10518.4	gi|336251622|ref|YP_004598853.1|	-	0.013	15.4	4.9	0.028	14.3	3.4	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ABC_tran	PF00005.22	gi|336251623|ref|YP_004598854.1|	-	7.3e-32	110.5	0.0	9.9e-32	110.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|336251623|ref|YP_004598854.1|	-	3.7e-12	46.8	0.0	3.6e-06	27.1	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|336251623|ref|YP_004598854.1|	-	6.9e-06	25.4	0.0	1.5e-05	24.4	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_19	PF13245.1	gi|336251623|ref|YP_004598854.1|	-	3.4e-05	23.5	0.0	0.00012	21.7	0.0	1.9	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_16	PF13191.1	gi|336251623|ref|YP_004598854.1|	-	3.8e-05	23.7	0.4	0.00013	22.0	0.3	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
SMC_N	PF02463.14	gi|336251623|ref|YP_004598854.1|	-	5.5e-05	22.5	0.0	0.0092	15.2	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|336251623|ref|YP_004598854.1|	-	0.0005	20.4	0.0	0.00069	20.0	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|336251623|ref|YP_004598854.1|	-	0.00053	19.8	0.0	0.0045	16.8	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.1	gi|336251623|ref|YP_004598854.1|	-	0.00077	19.0	0.0	0.0024	17.4	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
SbcCD_C	PF13558.1	gi|336251623|ref|YP_004598854.1|	-	0.0017	18.2	0.7	0.028	14.3	0.5	2.3	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_17	PF13207.1	gi|336251623|ref|YP_004598854.1|	-	0.0028	18.4	0.8	0.064	14.0	0.0	2.3	2	1	0	2	2	2	1	AAA	domain
AAA_10	PF12846.2	gi|336251623|ref|YP_004598854.1|	-	0.0039	16.6	0.0	0.01	15.3	0.0	1.6	2	0	0	2	2	2	1	AAA-like	domain
AAA_22	PF13401.1	gi|336251623|ref|YP_004598854.1|	-	0.0049	17.0	0.1	0.11	12.6	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.1	gi|336251623|ref|YP_004598854.1|	-	0.0051	16.2	0.5	0.02	14.3	0.3	2.0	1	1	0	1	1	1	1	AAA	domain
NACHT	PF05729.7	gi|336251623|ref|YP_004598854.1|	-	0.011	15.4	0.0	0.017	14.7	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
ABC_ATPase	PF09818.4	gi|336251623|ref|YP_004598854.1|	-	0.012	14.1	0.3	2.6	6.5	0.1	3.0	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
AAA_5	PF07728.9	gi|336251623|ref|YP_004598854.1|	-	0.015	14.9	0.3	0.076	12.7	0.0	2.0	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
NTPase_1	PF03266.10	gi|336251623|ref|YP_004598854.1|	-	0.022	14.5	0.0	0.065	12.9	0.0	1.9	1	1	0	1	1	1	0	NTPase
MobB	PF03205.9	gi|336251623|ref|YP_004598854.1|	-	0.025	14.2	0.0	0.064	12.9	0.0	1.7	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
MMR_HSR1	PF01926.18	gi|336251623|ref|YP_004598854.1|	-	0.031	14.2	0.2	0.12	12.3	0.0	2.2	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
DUF258	PF03193.11	gi|336251623|ref|YP_004598854.1|	-	0.044	12.9	0.0	0.066	12.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
Mg_chelatase	PF01078.16	gi|336251623|ref|YP_004598854.1|	-	0.077	12.1	0.0	0.15	11.2	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
cobW	PF02492.14	gi|336251623|ref|YP_004598854.1|	-	0.12	11.8	0.0	0.31	10.4	0.0	1.7	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
IstB_IS21	PF01695.12	gi|336251623|ref|YP_004598854.1|	-	0.14	11.5	0.2	14	5.0	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_14	PF13173.1	gi|336251623|ref|YP_004598854.1|	-	0.14	12.0	0.0	0.45	10.4	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.17	gi|336251623|ref|YP_004598854.1|	-	0.2	10.4	0.0	0.35	9.6	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
ABC-3	PF00950.12	gi|336251624|ref|YP_004598855.1|	-	1.5e-59	201.4	40.5	1.8e-59	201.1	28.1	1.1	1	0	0	1	1	1	1	ABC	3	transport	family
FecCD	PF01032.13	gi|336251624|ref|YP_004598855.1|	-	0.00011	21.1	37.6	0.00011	21.1	26.1	1.9	1	1	0	1	1	1	1	FecCD	transport	family
DUF2407_C	PF13373.1	gi|336251624|ref|YP_004598855.1|	-	0.026	14.4	0.3	0.092	12.6	0.2	1.9	1	0	0	1	1	1	0	DUF2407	C-terminal	domain
Glycophorin_A	PF01102.13	gi|336251624|ref|YP_004598855.1|	-	5.2	6.8	5.2	27	4.5	0.0	3.1	2	1	0	2	2	2	0	Glycophorin	A
Fe_dep_repr_C	PF02742.10	gi|336251625|ref|YP_004598856.1|	-	2.1e-29	101.0	0.5	3.4e-29	100.3	0.4	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
Fe_dep_repress	PF01325.14	gi|336251625|ref|YP_004598856.1|	-	3.5e-19	68.5	1.0	8.5e-19	67.2	0.7	1.7	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
FeoA	PF04023.9	gi|336251625|ref|YP_004598856.1|	-	4.2e-14	52.2	0.3	8.5e-14	51.2	0.2	1.5	1	0	0	1	1	1	1	FeoA	domain
MarR_2	PF12802.2	gi|336251625|ref|YP_004598856.1|	-	3.4e-08	33.0	0.1	1.6e-07	30.8	0.0	2.1	2	0	0	2	2	2	1	MarR	family
MarR	PF01047.17	gi|336251625|ref|YP_004598856.1|	-	1.2e-07	31.2	0.1	1.5e-06	27.8	0.0	2.4	3	0	0	3	3	2	1	MarR	family
HTH_27	PF13463.1	gi|336251625|ref|YP_004598856.1|	-	3.5e-07	30.4	0.3	8.7e-07	29.1	0.2	1.7	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.2	gi|336251625|ref|YP_004598856.1|	-	3.5e-07	29.9	0.0	1.2e-06	28.2	0.0	1.9	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|336251625|ref|YP_004598856.1|	-	1.2e-05	24.5	0.0	2.4e-05	23.5	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
GntR	PF00392.16	gi|336251625|ref|YP_004598856.1|	-	2.1e-05	23.8	0.1	8.7e-05	21.8	0.0	2.2	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
TrmB	PF01978.14	gi|336251625|ref|YP_004598856.1|	-	3.5e-05	23.4	0.1	6.7e-05	22.5	0.1	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_12	PF08461.5	gi|336251625|ref|YP_004598856.1|	-	5.2e-05	22.8	0.2	0.00016	21.3	0.1	1.9	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_1	PF00126.22	gi|336251625|ref|YP_004598856.1|	-	5.7e-05	22.7	0.2	0.00061	19.4	0.0	2.4	2	1	0	2	2	2	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_5	PF01022.15	gi|336251625|ref|YP_004598856.1|	-	9e-05	22.0	0.0	0.00021	20.8	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Rrf2	PF02082.15	gi|336251625|ref|YP_004598856.1|	-	0.00019	21.4	0.1	0.0016	18.5	0.0	2.2	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_11	PF08279.7	gi|336251625|ref|YP_004598856.1|	-	0.00022	20.7	0.1	0.00051	19.6	0.1	1.6	1	0	0	1	1	1	1	HTH	domain
HTH_Crp_2	PF13545.1	gi|336251625|ref|YP_004598856.1|	-	0.0003	20.5	0.0	0.0008	19.1	0.0	1.7	2	0	0	2	2	1	1	Crp-like	helix-turn-helix	domain
DUF2250	PF10007.4	gi|336251625|ref|YP_004598856.1|	-	0.0014	18.5	0.1	0.0025	17.7	0.0	1.4	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_IclR	PF09339.5	gi|336251625|ref|YP_004598856.1|	-	0.0018	17.7	0.9	0.0045	16.5	0.1	2.1	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_36	PF13730.1	gi|336251625|ref|YP_004598856.1|	-	0.0036	17.3	0.0	0.0067	16.5	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HxlR	PF01638.12	gi|336251625|ref|YP_004598856.1|	-	0.0076	15.8	0.0	0.014	15.0	0.0	1.4	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
Topoisom_bac	PF01131.15	gi|336251625|ref|YP_004598856.1|	-	0.0086	14.9	0.0	0.011	14.5	0.0	1.1	1	0	0	1	1	1	1	DNA	topoisomerase
HTH_AsnC-type	PF13404.1	gi|336251625|ref|YP_004598856.1|	-	0.011	15.2	0.0	0.026	14.0	0.0	1.6	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_23	PF13384.1	gi|336251625|ref|YP_004598856.1|	-	0.014	15.0	0.3	0.037	13.6	0.0	1.9	2	0	0	2	2	1	0	Homeodomain-like	domain
HTH_34	PF13601.1	gi|336251625|ref|YP_004598856.1|	-	0.024	14.6	0.0	0.049	13.6	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Penicillinase_R	PF03965.11	gi|336251625|ref|YP_004598856.1|	-	0.028	14.5	0.1	0.063	13.3	0.0	1.6	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_10	PF04967.7	gi|336251625|ref|YP_004598856.1|	-	0.034	13.7	0.0	0.071	12.6	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HemN_C	PF06969.11	gi|336251625|ref|YP_004598856.1|	-	0.042	13.9	0.0	0.087	12.8	0.0	1.6	1	0	0	1	1	1	0	HemN	C-terminal	domain
DUF4423	PF14394.1	gi|336251625|ref|YP_004598856.1|	-	0.051	13.1	0.0	0.079	12.5	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
FeoC	PF09012.5	gi|336251625|ref|YP_004598856.1|	-	0.051	13.2	0.0	0.092	12.4	0.0	1.4	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
HTH_DeoR	PF08220.7	gi|336251625|ref|YP_004598856.1|	-	0.065	12.7	0.1	0.19	11.3	0.1	1.8	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_CodY	PF08222.6	gi|336251625|ref|YP_004598856.1|	-	0.091	12.1	0.0	0.26	10.6	0.0	1.8	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
Phage_rep_org_N	PF09681.5	gi|336251625|ref|YP_004598856.1|	-	0.094	12.2	0.0	0.16	11.5	0.0	1.4	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
Put_DNA-bind_N	PF06971.8	gi|336251625|ref|YP_004598856.1|	-	0.17	11.6	0.5	0.71	9.6	0.0	2.3	2	0	0	2	2	2	0	Putative	DNA-binding	protein	N-terminus
DUF993	PF06187.6	gi|336251627|ref|YP_004598858.1|	-	0.0023	16.5	0.1	0.0036	15.8	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF993)
DUF955	PF06114.8	gi|336251631|ref|YP_004598862.1|	-	0.00025	20.7	0.0	0.00042	20.0	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF955)
SprT-like	PF10263.4	gi|336251631|ref|YP_004598862.1|	-	0.0063	16.1	2.6	0.017	14.7	1.1	2.1	1	1	1	2	2	2	1	SprT-like	family
Peptidase_MA_2	PF13485.1	gi|336251631|ref|YP_004598862.1|	-	0.022	14.8	0.0	0.045	13.8	0.0	1.5	1	0	0	1	1	1	0	Peptidase	MA	superfamily
DUF2268	PF10026.4	gi|336251631|ref|YP_004598862.1|	-	0.046	13.0	0.0	0.099	12.0	0.0	1.5	2	0	0	2	2	2	0	Predicted	Zn-dependent	protease	(DUF2268)
MCP_N	PF05581.7	gi|336251631|ref|YP_004598862.1|	-	0.15	12.2	0.2	0.3	11.2	0.1	1.4	1	0	0	1	1	1	0	Vibrio	chemotaxis	protein	N	terminus
DUF2274	PF10038.4	gi|336251632|ref|YP_004598863.1|	-	0.036	14.1	0.8	4.8	7.3	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2274)
Cdc6_C	PF09079.6	gi|336251633|ref|YP_004598864.1|	-	1.8e-17	62.8	0.0	1.4e-16	59.9	0.0	2.3	2	0	0	2	2	2	1	CDC6,	C	terminal
AAA_16	PF13191.1	gi|336251633|ref|YP_004598864.1|	-	5e-14	52.7	0.0	5.4e-13	49.3	0.0	2.3	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.24	gi|336251633|ref|YP_004598864.1|	-	1.1e-10	41.8	0.0	2.5e-10	40.6	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|336251633|ref|YP_004598864.1|	-	2.5e-07	30.9	0.0	9e-07	29.0	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
DUF815	PF05673.8	gi|336251633|ref|YP_004598864.1|	-	1.5e-06	27.2	0.0	3.6e-06	26.0	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
Arch_ATPase	PF01637.13	gi|336251633|ref|YP_004598864.1|	-	0.00011	22.0	0.0	0.00026	20.7	0.0	1.7	2	0	0	2	2	2	1	Archaeal	ATPase
NACHT	PF05729.7	gi|336251633|ref|YP_004598864.1|	-	0.0015	18.2	0.0	0.0028	17.3	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
AAA_25	PF13481.1	gi|336251633|ref|YP_004598864.1|	-	0.0027	17.1	0.0	0.043	13.2	0.0	2.4	1	1	0	1	1	1	1	AAA	domain
NB-ARC	PF00931.17	gi|336251633|ref|YP_004598864.1|	-	0.005	15.7	0.0	0.0077	15.1	0.0	1.2	1	0	0	1	1	1	1	NB-ARC	domain
Sigma54_activat	PF00158.21	gi|336251633|ref|YP_004598864.1|	-	0.014	14.8	0.0	0.025	14.0	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
IstB_IS21	PF01695.12	gi|336251633|ref|YP_004598864.1|	-	0.062	12.7	0.3	0.37	10.1	0.0	2.2	2	1	0	2	2	2	0	IstB-like	ATP	binding	protein
HTH_36	PF13730.1	gi|336251633|ref|YP_004598864.1|	-	0.064	13.3	0.2	0.51	10.5	0.1	2.2	1	1	0	1	1	1	0	Helix-turn-helix	domain
DUF2075	PF09848.4	gi|336251633|ref|YP_004598864.1|	-	0.072	12.0	0.0	2.1	7.2	0.0	2.2	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
Mg_chelatase	PF01078.16	gi|336251633|ref|YP_004598864.1|	-	0.077	12.1	0.0	0.15	11.1	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_PrkA	PF08298.6	gi|336251633|ref|YP_004598864.1|	-	0.08	11.6	0.0	0.12	11.0	0.0	1.3	1	0	0	1	1	1	0	PrkA	AAA	domain
AAA_30	PF13604.1	gi|336251633|ref|YP_004598864.1|	-	0.085	12.4	0.0	0.36	10.3	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_29	PF13555.1	gi|336251633|ref|YP_004598864.1|	-	0.091	12.2	0.0	0.2	11.1	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
PIN_3	PF13470.1	gi|336251635|ref|YP_004598866.1|	-	0.0001	22.9	0.7	0.00014	22.5	0.5	1.2	1	0	0	1	1	1	1	PIN	domain
PIN	PF01850.16	gi|336251635|ref|YP_004598866.1|	-	0.00098	19.4	0.0	0.008	16.5	0.0	2.1	1	1	0	1	1	1	1	PIN	domain
DUF2286	PF10051.4	gi|336251635|ref|YP_004598866.1|	-	0.1	12.2	0.5	0.51	9.9	0.1	1.9	1	1	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2286)
CbiA	PF01656.18	gi|336251636|ref|YP_004598867.1|	-	4.3e-20	71.9	0.0	7.4e-20	71.1	0.0	1.4	2	0	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|336251636|ref|YP_004598867.1|	-	4.8e-07	29.8	0.1	2.2e-06	27.6	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
ArsA_ATPase	PF02374.10	gi|336251636|ref|YP_004598867.1|	-	2.9e-05	23.2	0.1	8.3e-05	21.7	0.1	1.7	1	1	0	1	1	1	1	Anion-transporting	ATPase
YhjQ	PF06564.7	gi|336251636|ref|YP_004598867.1|	-	0.00054	19.4	0.1	0.0012	18.2	0.1	1.5	1	1	0	1	1	1	1	YhjQ	protein
MipZ	PF09140.6	gi|336251636|ref|YP_004598867.1|	-	0.00068	18.7	0.1	0.18	10.8	0.0	2.4	1	1	0	2	2	2	2	ATPase	MipZ
Fer4_NifH	PF00142.13	gi|336251636|ref|YP_004598867.1|	-	0.032	13.4	0.0	0.07	12.3	0.0	1.5	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
Erythro_esteras	PF05139.9	gi|336251636|ref|YP_004598867.1|	-	0.097	11.8	0.0	0.2	10.8	0.0	1.4	1	0	0	1	1	1	0	Erythromycin	esterase
AAA_16	PF13191.1	gi|336251636|ref|YP_004598867.1|	-	0.11	12.4	1.1	0.26	11.2	0.2	1.9	1	1	1	2	2	2	0	AAA	ATPase	domain
AAA_10	PF12846.2	gi|336251636|ref|YP_004598867.1|	-	0.13	11.6	0.0	0.23	10.8	0.0	1.7	1	1	0	1	1	1	0	AAA-like	domain
Gas_vesicle_C	PF01304.12	gi|336251637|ref|YP_004598868.1|	-	0.22	11.1	0.9	0.37	10.4	0.6	1.3	1	0	0	1	1	1	0	Gas	vesicles	protein	GVPc	repeated	domain
Pyr_redox_2	PF07992.9	gi|336251638|ref|YP_004598869.1|	-	4.6e-23	82.1	0.0	1.3e-22	80.6	0.0	1.7	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|336251638|ref|YP_004598869.1|	-	1.3e-07	31.9	0.1	0.00046	20.3	0.0	2.4	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|336251638|ref|YP_004598869.1|	-	4.3e-07	30.2	0.0	0.0091	16.3	0.2	2.6	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|336251638|ref|YP_004598869.1|	-	1.5e-06	27.3	1.7	8.9e-05	21.5	1.0	2.3	1	1	1	2	2	2	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|336251638|ref|YP_004598869.1|	-	3e-06	26.3	4.1	8.7e-06	24.8	0.7	2.5	2	1	1	3	3	3	1	FAD	binding	domain
HI0933_like	PF03486.9	gi|336251638|ref|YP_004598869.1|	-	1.8e-05	23.3	0.1	0.00058	18.4	0.3	2.0	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_3	PF01494.14	gi|336251638|ref|YP_004598869.1|	-	4.9e-05	22.5	1.2	0.00021	20.4	0.7	1.9	1	1	1	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|336251638|ref|YP_004598869.1|	-	5.2e-05	23.1	0.3	0.00015	21.7	0.2	1.9	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.2	gi|336251638|ref|YP_004598869.1|	-	6.3e-05	22.2	2.7	0.00012	21.2	1.9	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
GIDA	PF01134.17	gi|336251638|ref|YP_004598869.1|	-	0.00012	21.1	0.2	0.00026	19.9	0.1	1.6	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
Thi4	PF01946.12	gi|336251638|ref|YP_004598869.1|	-	0.0046	16.0	0.1	0.0082	15.2	0.0	1.3	1	0	0	1	1	1	1	Thi4	family
NAD_binding_9	PF13454.1	gi|336251638|ref|YP_004598869.1|	-	0.01	15.6	0.2	1.6	8.5	0.0	3.0	3	0	0	3	3	3	0	FAD-NAD(P)-binding
Trp_halogenase	PF04820.9	gi|336251638|ref|YP_004598869.1|	-	0.034	12.7	0.3	0.18	10.4	0.2	2.0	2	0	0	2	2	2	0	Tryptophan	halogenase
K_oxygenase	PF13434.1	gi|336251638|ref|YP_004598869.1|	-	0.043	12.7	0.0	0.12	11.2	0.0	1.7	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
AlaDh_PNT_C	PF01262.16	gi|336251638|ref|YP_004598869.1|	-	0.046	13.2	0.2	0.083	12.4	0.1	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
YIEGIA	PF14045.1	gi|336251638|ref|YP_004598869.1|	-	0.18	10.3	0.0	0.27	9.8	0.0	1.2	1	0	0	1	1	1	0	YIEGIA	protein
Pyr_redox_2	PF07992.9	gi|336251639|ref|YP_004598870.1|	-	1.3e-22	80.6	0.1	1.6e-22	80.4	0.1	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|336251639|ref|YP_004598870.1|	-	5.8e-20	71.4	0.4	4.6e-17	62.1	0.0	2.4	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|336251639|ref|YP_004598870.1|	-	2.5e-16	60.3	0.1	3.6e-12	46.7	0.0	2.8	2	1	1	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|336251639|ref|YP_004598870.1|	-	1.3e-09	37.4	8.0	4.3e-06	25.8	0.1	4.1	4	1	1	5	5	5	3	FAD	binding	domain
DAO	PF01266.19	gi|336251639|ref|YP_004598870.1|	-	1.3e-09	37.4	5.8	5.6e-06	25.5	0.1	3.6	3	1	0	3	3	3	2	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|336251639|ref|YP_004598870.1|	-	5.6e-07	29.4	0.2	2.4e-05	24.2	0.0	2.7	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Thi4	PF01946.12	gi|336251639|ref|YP_004598870.1|	-	9.9e-06	24.8	0.2	0.001	18.2	0.0	2.5	3	0	0	3	3	3	1	Thi4	family
HI0933_like	PF03486.9	gi|336251639|ref|YP_004598870.1|	-	2e-05	23.2	0.1	0.018	13.5	0.0	3.2	3	0	0	3	3	3	1	HI0933-like	protein
FAD_oxidored	PF12831.2	gi|336251639|ref|YP_004598870.1|	-	2.2e-05	23.7	0.1	6.6e-05	22.1	0.0	1.9	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
GIDA	PF01134.17	gi|336251639|ref|YP_004598870.1|	-	4.7e-05	22.4	0.5	0.0085	14.9	0.0	3.0	4	0	0	4	4	4	1	Glucose	inhibited	division	protein	A
NAD_binding_7	PF13241.1	gi|336251639|ref|YP_004598870.1|	-	0.00022	21.4	0.0	0.0019	18.4	0.0	2.2	2	0	0	2	2	2	1	Putative	NAD(P)-binding
Lycopene_cycl	PF05834.7	gi|336251639|ref|YP_004598870.1|	-	0.00032	19.7	0.6	0.46	9.3	0.2	3.1	3	0	0	3	3	3	1	Lycopene	cyclase	protein
FAD_binding_3	PF01494.14	gi|336251639|ref|YP_004598870.1|	-	0.0015	17.6	3.5	0.8	8.6	0.2	3.3	2	1	1	3	3	3	1	FAD	binding	domain
K_oxygenase	PF13434.1	gi|336251639|ref|YP_004598870.1|	-	0.0016	17.4	0.0	0.033	13.1	0.0	2.2	2	0	0	2	2	2	1	L-lysine	6-monooxygenase	(NADPH-requiring)
FMO-like	PF00743.14	gi|336251639|ref|YP_004598870.1|	-	0.22	9.6	0.0	6.6	4.8	0.0	2.0	2	0	0	2	2	2	0	Flavin-binding	monooxygenase-like
Thioredoxin	PF00085.15	gi|336251640|ref|YP_004598871.1|	-	1.5e-28	98.5	0.0	1.8e-28	98.2	0.0	1.0	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|336251640|ref|YP_004598871.1|	-	5.4e-12	45.9	0.0	1.1e-10	41.6	0.0	2.0	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_8	PF13905.1	gi|336251640|ref|YP_004598871.1|	-	1.2e-07	31.7	0.0	2.2e-05	24.4	0.0	2.1	1	1	1	2	2	2	2	Thioredoxin-like
Thioredoxin_7	PF13899.1	gi|336251640|ref|YP_004598871.1|	-	5.9e-07	29.4	0.0	9.9e-07	28.6	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin-like
Thioredoxin_9	PF14595.1	gi|336251640|ref|YP_004598871.1|	-	3.8e-05	23.2	0.0	4.5e-05	23.0	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
DSBA	PF01323.15	gi|336251640|ref|YP_004598871.1|	-	5.9e-05	22.7	0.2	0.00094	18.7	0.0	2.0	1	1	1	2	2	2	1	DSBA-like	thioredoxin	domain
TraF	PF13728.1	gi|336251640|ref|YP_004598871.1|	-	0.00021	20.8	0.0	0.00027	20.5	0.0	1.2	1	0	0	1	1	1	1	F	plasmid	transfer	operon	protein
AhpC-TSA	PF00578.16	gi|336251640|ref|YP_004598871.1|	-	0.002	17.8	0.0	0.0054	16.4	0.0	1.6	1	1	0	1	1	1	1	AhpC/TSA	family
HyaE	PF07449.6	gi|336251640|ref|YP_004598871.1|	-	0.0031	17.3	0.0	0.0049	16.7	0.0	1.3	1	0	0	1	1	1	1	Hydrogenase-1	expression	protein	HyaE
Thioredoxin_3	PF13192.1	gi|336251640|ref|YP_004598871.1|	-	0.0044	16.7	0.0	0.0061	16.3	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin	domain
DUF836	PF05768.9	gi|336251640|ref|YP_004598871.1|	-	0.026	14.7	0.0	0.035	14.3	0.0	1.3	1	0	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
Glutaredoxin	PF00462.19	gi|336251640|ref|YP_004598871.1|	-	0.041	13.8	0.0	0.076	13.0	0.0	1.5	1	0	0	1	1	1	0	Glutaredoxin
Redoxin	PF08534.5	gi|336251640|ref|YP_004598871.1|	-	0.054	13.0	0.1	0.32	10.5	0.0	1.7	1	1	1	2	2	2	0	Redoxin
Methyltransf_11	PF08241.7	gi|336251641|ref|YP_004598872.1|	-	2e-20	73.0	0.0	3.1e-20	72.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|336251641|ref|YP_004598872.1|	-	1.5e-19	70.0	0.0	1.9e-19	69.7	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_31	PF13847.1	gi|336251641|ref|YP_004598872.1|	-	4.3e-18	65.3	0.0	5.6e-18	64.9	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|336251641|ref|YP_004598872.1|	-	9.7e-14	51.6	0.0	1.5e-13	51.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|336251641|ref|YP_004598872.1|	-	2.2e-13	50.7	0.0	3.2e-13	50.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|336251641|ref|YP_004598872.1|	-	2.5e-13	50.2	0.0	3.7e-13	49.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|336251641|ref|YP_004598872.1|	-	3.5e-12	46.3	0.0	4.7e-12	45.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.14	gi|336251641|ref|YP_004598872.1|	-	4e-11	42.8	0.0	5.6e-11	42.3	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_26	PF13659.1	gi|336251641|ref|YP_004598872.1|	-	6.4e-09	35.8	0.0	1.3e-08	34.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
RrnaAD	PF00398.15	gi|336251641|ref|YP_004598872.1|	-	4.9e-06	25.7	0.0	6.6e-06	25.3	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
GCD14	PF08704.5	gi|336251641|ref|YP_004598872.1|	-	0.00015	21.4	0.0	0.00019	21.0	0.0	1.1	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_3	PF01596.12	gi|336251641|ref|YP_004598872.1|	-	0.00097	18.2	0.0	0.0015	17.6	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase
MTS	PF05175.9	gi|336251641|ref|YP_004598872.1|	-	0.00099	18.5	0.0	0.0056	16.0	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	small	domain
NodS	PF05401.6	gi|336251641|ref|YP_004598872.1|	-	0.0017	17.7	0.0	0.0023	17.3	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
DREV	PF05219.7	gi|336251641|ref|YP_004598872.1|	-	0.0027	16.6	0.0	0.0074	15.1	0.0	1.6	1	1	0	1	1	1	1	DREV	methyltransferase
Methyltransf_4	PF02390.12	gi|336251641|ref|YP_004598872.1|	-	0.0027	16.7	0.0	0.0097	14.9	0.0	1.8	2	0	0	2	2	2	1	Putative	methyltransferase
Fibrillarin	PF01269.12	gi|336251641|ref|YP_004598872.1|	-	0.0029	16.5	0.0	0.0034	16.3	0.0	1.1	1	0	0	1	1	1	1	Fibrillarin
DUF938	PF06080.7	gi|336251641|ref|YP_004598872.1|	-	0.011	15.3	0.0	0.017	14.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF938)
Methyltransf_24	PF13578.1	gi|336251641|ref|YP_004598872.1|	-	0.012	16.4	0.0	0.023	15.5	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_32	PF13679.1	gi|336251641|ref|YP_004598872.1|	-	0.022	14.4	0.0	0.031	13.9	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
CMAS	PF02353.15	gi|336251641|ref|YP_004598872.1|	-	0.024	13.7	0.0	0.028	13.4	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Methyltransf_28	PF02636.12	gi|336251641|ref|YP_004598872.1|	-	0.11	11.8	0.0	0.14	11.5	0.0	1.1	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
FtsJ	PF01728.14	gi|336251641|ref|YP_004598872.1|	-	0.16	11.9	0.0	0.22	11.5	0.0	1.3	1	1	0	1	1	1	0	FtsJ-like	methyltransferase
DUF302	PF03625.9	gi|336251642|ref|YP_004598873.1|	-	7e-25	86.3	0.1	9.6e-25	85.9	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF302
Lactamase_B	PF00753.22	gi|336251643|ref|YP_004598874.1|	-	1.5e-19	70.4	3.8	2.4e-19	69.7	2.7	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Rhodanese	PF00581.15	gi|336251643|ref|YP_004598874.1|	-	4.7e-16	59.1	0.0	8.3e-16	58.3	0.0	1.4	1	0	0	1	1	1	1	Rhodanese-like	domain
adh_short	PF00106.20	gi|336251644|ref|YP_004598875.1|	-	5.1e-26	91.5	0.2	6.4e-26	91.2	0.2	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|336251644|ref|YP_004598875.1|	-	9.7e-24	84.4	0.0	1.1e-23	84.2	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|336251644|ref|YP_004598875.1|	-	4.9e-11	42.6	0.0	6.6e-11	42.2	0.0	1.2	1	0	0	1	1	1	1	KR	domain
DUF4341	PF14241.1	gi|336251645|ref|YP_004598876.1|	-	1.4	8.6	6.1	1.6	8.5	0.4	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4341)
Usp	PF00582.21	gi|336251646|ref|YP_004598877.1|	-	5.1e-63	211.4	15.8	2.2e-34	118.6	3.4	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
SRP54	PF00448.17	gi|336251646|ref|YP_004598877.1|	-	0.014	14.8	0.2	0.16	11.4	0.0	2.4	1	1	2	3	3	3	0	SRP54-type	protein,	GTPase	domain
Bac_thur_toxin	PF01338.13	gi|336251646|ref|YP_004598877.1|	-	0.023	13.9	0.0	0.037	13.2	0.0	1.2	1	0	0	1	1	1	0	Bacillus	thuringiensis	toxin
AP_endonuc_2	PF01261.19	gi|336251646|ref|YP_004598877.1|	-	0.14	11.3	4.7	0.41	9.8	0.5	2.5	2	1	0	2	2	2	0	Xylose	isomerase-like	TIM	barrel
Usp	PF00582.21	gi|336251647|ref|YP_004598878.1|	-	3.4e-08	33.7	0.4	4.1e-08	33.5	0.3	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
ETF	PF01012.16	gi|336251647|ref|YP_004598878.1|	-	0.018	14.7	0.0	1.1	8.9	0.0	2.3	2	0	0	2	2	2	0	Electron	transfer	flavoprotein	domain
PAC2	PF09754.4	gi|336251648|ref|YP_004598879.1|	-	2.6e-27	96.1	0.0	3.1e-27	95.8	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
ABC2_membrane_2	PF12679.2	gi|336251649|ref|YP_004598880.1|	-	5.1e-17	61.6	12.9	1.1e-16	60.6	9.0	1.5	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|336251649|ref|YP_004598880.1|	-	7.8e-14	51.3	8.2	9.8e-14	51.0	5.7	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.2	gi|336251649|ref|YP_004598880.1|	-	1.7e-07	30.6	10.4	1.7e-07	30.6	7.2	1.5	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.1	gi|336251649|ref|YP_004598880.1|	-	8.8e-06	25.1	4.8	1.6e-05	24.2	2.8	1.8	2	0	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.19	gi|336251649|ref|YP_004598880.1|	-	2e-05	23.8	12.5	2.4e-05	23.5	7.9	1.6	1	1	0	1	1	1	1	ABC-2	type	transporter
Phage_holin_2	PF04550.7	gi|336251649|ref|YP_004598880.1|	-	3.1	7.9	7.4	0.69	10.0	0.8	2.8	2	1	0	3	3	3	0	Phage	holin	family	2
NPCBM_assoc	PF10633.4	gi|336251650|ref|YP_004598881.1|	-	1e-05	25.4	10.6	0.055	13.5	3.3	3.4	2	1	0	2	2	2	2	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
DUF2393	PF09624.5	gi|336251650|ref|YP_004598881.1|	-	0.00034	20.1	0.1	0.014	14.9	0.0	2.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2393)
CARDB	PF07705.6	gi|336251650|ref|YP_004598881.1|	-	0.0012	18.8	6.3	0.6	10.1	2.2	2.9	2	1	0	2	2	2	2	CARDB
DUF11	PF01345.13	gi|336251650|ref|YP_004598881.1|	-	0.0017	18.3	5.9	0.0017	18.3	4.1	5.0	4	2	1	5	5	5	1	Domain	of	unknown	function	DUF11
Gryzun	PF07919.7	gi|336251650|ref|YP_004598881.1|	-	0.0029	16.0	0.2	0.019	13.3	0.0	2.0	1	1	1	2	2	2	1	Gryzun,	putative	trafficking	through	Golgi
Transglut_C	PF00927.17	gi|336251650|ref|YP_004598881.1|	-	0.0077	16.2	0.0	0.1	12.6	0.0	2.4	2	0	0	2	2	2	1	Transglutaminase	family,	C-terminal	ig	like	domain
Fn3-like	PF14310.1	gi|336251650|ref|YP_004598881.1|	-	0.01	15.7	0.9	1.1	9.2	0.0	3.3	3	0	0	3	3	3	0	Fibronectin	type	III-like	domain
DUF3357	PF11837.3	gi|336251650|ref|YP_004598881.1|	-	0.081	12.7	0.0	0.19	11.5	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3357)
Herpes_US9	PF06072.6	gi|336251650|ref|YP_004598881.1|	-	3.8	7.4	5.1	0.38	10.6	0.2	1.8	2	0	0	2	2	2	0	Alphaherpesvirus	tegument	protein	US9
ABC_tran	PF00005.22	gi|336251651|ref|YP_004598882.1|	-	1.1e-26	93.8	0.0	1.5e-26	93.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|336251651|ref|YP_004598882.1|	-	2.5e-12	47.3	0.1	2.9e-08	34.0	0.1	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.1	gi|336251651|ref|YP_004598882.1|	-	0.00041	20.7	0.0	0.0006	20.2	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|336251651|ref|YP_004598882.1|	-	0.0021	17.5	0.1	0.0038	16.7	0.1	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|336251651|ref|YP_004598882.1|	-	0.052	12.7	0.0	0.083	12.0	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_16	PF13191.1	gi|336251651|ref|YP_004598882.1|	-	0.067	13.1	0.0	0.23	11.4	0.0	1.8	1	1	0	2	2	2	0	AAA	ATPase	domain
DUF4162	PF13732.1	gi|336251651|ref|YP_004598882.1|	-	0.067	13.7	0.0	0.14	12.6	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4162)
SOUL	PF04832.7	gi|336251652|ref|YP_004598883.1|	-	2.7e-48	163.8	0.4	3.2e-48	163.5	0.3	1.1	1	0	0	1	1	1	1	SOUL	heme-binding	protein
Usp	PF00582.21	gi|336251653|ref|YP_004598884.1|	-	9.2e-31	106.9	0.2	1.2e-30	106.5	0.1	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF2267	PF10025.4	gi|336251655|ref|YP_004598886.1|	-	2.9e-35	121.0	0.7	4e-35	120.5	0.3	1.4	1	1	1	2	2	2	1	Uncharacterized	conserved	protein	(DUF2267)
DUF3631	PF12307.3	gi|336251655|ref|YP_004598886.1|	-	0.089	12.6	0.1	0.12	12.2	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3631)
Usp	PF00582.21	gi|336251656|ref|YP_004598887.1|	-	1.6e-52	177.3	12.1	4.6e-30	104.6	1.2	2.1	2	0	0	2	2	2	2	Universal	stress	protein	family
SurE	PF01975.12	gi|336251656|ref|YP_004598887.1|	-	0.0042	16.4	0.1	0.0068	15.7	0.1	1.3	1	0	0	1	1	1	1	Survival	protein	SurE
DUF457	PF04307.9	gi|336251657|ref|YP_004598888.1|	-	0.041	13.2	1.3	0.057	12.7	0.9	1.3	1	1	0	1	1	1	0	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
Usp	PF00582.21	gi|336251658|ref|YP_004598889.1|	-	1.7e-25	89.8	2.1	2e-25	89.5	1.4	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
GARS_N	PF02844.10	gi|336251658|ref|YP_004598889.1|	-	0.058	13.8	0.0	0.26	11.7	0.0	1.9	1	1	1	2	2	2	0	Phosphoribosylglycinamide	synthetase,	N	domain
TAT_signal	PF10518.4	gi|336251659|ref|YP_004598890.1|	-	0.00078	19.2	0.1	0.0012	18.6	0.1	1.3	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Copper-bind	PF00127.15	gi|336251659|ref|YP_004598890.1|	-	0.0016	18.6	0.0	0.0027	17.8	0.0	1.4	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
NAPRTase	PF04095.11	gi|336251660|ref|YP_004598891.1|	-	3.6e-18	65.7	0.1	6.5e-18	64.8	0.0	1.4	1	1	0	1	1	1	1	Nicotinate	phosphoribosyltransferase	(NAPRTase)	family
Usp	PF00582.21	gi|336251661|ref|YP_004598892.1|	-	1.3e-27	96.6	0.2	1.8e-27	96.2	0.1	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
CBS	PF00571.23	gi|336251662|ref|YP_004598893.1|	-	2.8e-26	91.0	2.3	1.9e-12	46.7	0.5	2.2	2	0	0	2	2	2	2	CBS	domain
DUF457	PF04307.9	gi|336251663|ref|YP_004598894.1|	-	4.1e-08	32.7	15.1	8e-08	31.7	10.4	1.5	1	1	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
Pyridox_ox_2	PF12900.2	gi|336251664|ref|YP_004598895.1|	-	2.1e-19	69.7	0.0	2.5e-19	69.5	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_oxidase	PF01243.15	gi|336251664|ref|YP_004598895.1|	-	1.4e-06	28.1	0.0	1.9e-06	27.7	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_ox_2	PF12900.2	gi|336251665|ref|YP_004598896.1|	-	1.3e-17	63.9	0.0	1.5e-17	63.7	0.0	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Sulfatase	PF00884.18	gi|336251666|ref|YP_004598897.1|	-	4.5e-40	137.7	0.0	6.2e-40	137.2	0.0	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.17	gi|336251666|ref|YP_004598897.1|	-	2.6e-07	30.3	1.6	6.8e-05	22.3	1.1	2.2	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Alk_phosphatase	PF00245.15	gi|336251666|ref|YP_004598897.1|	-	0.12	11.0	0.1	0.25	9.9	0.0	1.4	2	0	0	2	2	2	0	Alkaline	phosphatase
Sulfatase_C	PF14707.1	gi|336251666|ref|YP_004598897.1|	-	0.18	12.1	0.1	0.35	11.1	0.1	1.4	1	0	0	1	1	1	0	C-terminal	region	of	aryl-sulfatase
NTP_transferase	PF00483.18	gi|336251667|ref|YP_004598898.1|	-	8.7e-31	107.0	0.0	1.1e-30	106.7	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|336251667|ref|YP_004598898.1|	-	6.6e-14	52.2	0.0	8.8e-14	51.8	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.19	gi|336251667|ref|YP_004598898.1|	-	0.018	14.5	0.3	0.91	9.1	0.0	3.1	3	0	0	3	3	3	0	Bacterial	transferase	hexapeptide	(six	repeats)
Usp	PF00582.21	gi|336251668|ref|YP_004598899.1|	-	5.5e-60	201.6	2.7	5e-30	104.5	1.1	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
Ag332	PF04671.7	gi|336251668|ref|YP_004598899.1|	-	0.093	12.5	0.1	12	5.8	0.0	2.7	2	0	0	2	2	2	0	Erythrocyte	membrane-associated	giant	protein	antigen	332
AP_endonuc_2	PF01261.19	gi|336251668|ref|YP_004598899.1|	-	0.097	11.9	0.1	1.8	7.8	0.0	2.5	2	2	1	3	3	3	0	Xylose	isomerase-like	TIM	barrel
Glycos_transf_1	PF00534.15	gi|336251669|ref|YP_004598900.1|	-	7.9e-30	103.5	0.0	1.2e-29	102.9	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|336251669|ref|YP_004598900.1|	-	4.6e-13	49.4	0.0	1.1e-12	48.2	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|336251669|ref|YP_004598900.1|	-	3.9e-09	36.6	0.0	2.8e-08	33.9	0.0	2.2	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Usp	PF00582.21	gi|336251670|ref|YP_004598901.1|	-	1.3e-30	106.3	1.3	1.5e-30	106.2	0.9	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
AP_endonuc_2	PF01261.19	gi|336251670|ref|YP_004598901.1|	-	6.6e-05	22.2	0.3	9.5e-05	21.7	0.2	1.2	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
CobU	PF02283.11	gi|336251670|ref|YP_004598901.1|	-	0.03	13.7	0.0	0.043	13.2	0.0	1.4	1	0	0	1	1	1	0	Cobinamide	kinase	/	cobinamide	phosphate	guanyltransferase
Usp	PF00582.21	gi|336251671|ref|YP_004598902.1|	-	1.1e-61	207.1	8.1	2.8e-32	111.8	0.8	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
Toprim_3	PF13362.1	gi|336251671|ref|YP_004598902.1|	-	2.3	8.5	7.6	0.5	10.6	0.3	2.8	2	2	1	3	3	3	0	Toprim	domain
Fe-ADH	PF00465.14	gi|336251672|ref|YP_004598903.1|	-	9.5e-59	198.8	7.0	1.2e-58	198.5	4.8	1.1	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH_2	PF13685.1	gi|336251672|ref|YP_004598903.1|	-	1.5e-38	132.4	0.2	2e-38	132.1	0.1	1.1	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
DHQ_synthase	PF01761.15	gi|336251672|ref|YP_004598903.1|	-	1.2e-05	24.3	2.6	4.3e-05	22.5	1.8	1.9	1	1	0	1	1	1	1	3-dehydroquinate	synthase
Cytochrom_B_N	PF00033.14	gi|336251673|ref|YP_004598904.1|	-	0.043	13.1	1.9	0.057	12.7	1.3	1.2	1	0	0	1	1	1	0	Cytochrome	b(N-terminal)/b6/petB
AP_endonuc_2	PF01261.19	gi|336251674|ref|YP_004598905.1|	-	1.1e-22	80.3	2.0	1.7e-22	79.7	1.4	1.2	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
Cg6151-P	PF10233.4	gi|336251675|ref|YP_004598906.1|	-	0.031	14.2	0.5	0.1	12.5	0.0	2.0	2	1	1	3	3	3	0	Uncharacterized	conserved	protein	CG6151-P
Chromate_transp	PF02417.10	gi|336251675|ref|YP_004598906.1|	-	0.26	10.8	7.0	0.37	10.3	4.9	1.3	1	0	0	1	1	1	0	Chromate	transporter
DUF3007	PF11460.3	gi|336251675|ref|YP_004598906.1|	-	0.49	10.4	5.9	1.5	8.9	0.1	2.3	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3007)
ABC2_membrane	PF01061.19	gi|336251675|ref|YP_004598906.1|	-	0.67	9.0	5.8	0.73	8.9	3.4	1.5	1	1	0	1	1	1	0	ABC-2	type	transporter
Usp	PF00582.21	gi|336251676|ref|YP_004598907.1|	-	8.6e-34	116.7	3.5	9.8e-34	116.5	2.4	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
AP_endonuc_2	PF01261.19	gi|336251676|ref|YP_004598907.1|	-	0.0018	17.6	0.1	0.028	13.7	0.1	2.0	2	0	0	2	2	2	1	Xylose	isomerase-like	TIM	barrel
NTP_transf_2	PF01909.18	gi|336251676|ref|YP_004598907.1|	-	0.0074	16.5	2.1	0.16	12.3	1.5	2.3	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
Usp	PF00582.21	gi|336251677|ref|YP_004598908.1|	-	6.6e-69	230.5	7.3	2.6e-35	121.6	0.9	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
DXP_reductoisom	PF02670.11	gi|336251677|ref|YP_004598908.1|	-	0.0064	17.0	0.2	0.68	10.4	0.0	2.3	2	0	0	2	2	2	1	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
Lactamase_B_4	PF13691.1	gi|336251677|ref|YP_004598908.1|	-	0.042	13.3	0.0	12	5.4	0.0	2.4	2	0	0	2	2	2	0	tRNase	Z	endonuclease
MGS	PF02142.17	gi|336251677|ref|YP_004598908.1|	-	0.065	13.1	0.0	2.1	8.3	0.0	2.4	2	0	0	2	2	2	0	MGS-like	domain
Usp	PF00582.21	gi|336251678|ref|YP_004598909.1|	-	5.3e-08	33.1	1.1	9e-08	32.4	0.7	1.5	1	1	0	1	1	1	1	Universal	stress	protein	family
ETF	PF01012.16	gi|336251678|ref|YP_004598909.1|	-	0.026	14.2	0.1	0.088	12.5	0.1	1.9	1	1	0	1	1	1	0	Electron	transfer	flavoprotein	domain
Usp	PF00582.21	gi|336251679|ref|YP_004598910.1|	-	6.4e-34	117.1	0.2	7.2e-34	116.9	0.2	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Usp	PF00582.21	gi|336251680|ref|YP_004598911.1|	-	1.1e-27	96.8	0.3	1.3e-27	96.6	0.2	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF2267	PF10025.4	gi|336251681|ref|YP_004598912.1|	-	2.8e-36	124.3	0.2	3.1e-36	124.1	0.1	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2267)
Usp	PF00582.21	gi|336251682|ref|YP_004598913.1|	-	3.5e-67	224.9	5.5	4.8e-34	117.5	0.6	2.1	2	0	0	2	2	2	2	Universal	stress	protein	family
GARS_N	PF02844.10	gi|336251682|ref|YP_004598913.1|	-	0.027	14.9	0.0	0.47	10.9	0.0	2.4	2	0	0	2	2	2	0	Phosphoribosylglycinamide	synthetase,	N	domain
GFO_IDH_MocA	PF01408.17	gi|336251682|ref|YP_004598913.1|	-	0.086	13.3	0.1	0.7	10.4	0.0	2.2	2	0	0	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
MFS_1	PF07690.11	gi|336251683|ref|YP_004598914.1|	-	3.7e-37	127.8	39.5	1.7e-19	69.7	12.2	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DUF2273	PF10031.4	gi|336251683|ref|YP_004598914.1|	-	0.041	13.5	0.5	0.041	13.5	0.4	4.4	6	0	0	6	6	6	0	Small	integral	membrane	protein	(DUF2273)
Lactamase_B	PF00753.22	gi|336251684|ref|YP_004598915.1|	-	4.9e-21	75.2	6.8	7.2e-21	74.7	4.7	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Rhodanese	PF00581.15	gi|336251684|ref|YP_004598915.1|	-	5.7e-17	62.0	0.0	2.2e-16	60.2	0.0	1.9	2	0	0	2	2	2	1	Rhodanese-like	domain
Lactamase_B_2	PF12706.2	gi|336251684|ref|YP_004598915.1|	-	0.0036	16.8	0.3	0.0058	16.1	0.2	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
HTH_10	PF04967.7	gi|336251685|ref|YP_004598916.1|	-	2e-21	75.3	0.4	3.3e-21	74.6	0.3	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_24	PF13412.1	gi|336251685|ref|YP_004598916.1|	-	0.13	11.6	0.1	0.56	9.6	0.0	2.1	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Polyketide_cyc2	PF10604.4	gi|336251686|ref|YP_004598917.1|	-	0.14	12.3	5.5	1.6	8.9	2.0	3.0	2	1	0	2	2	2	0	Polyketide	cyclase	/	dehydrase	and	lipid	transport
VIT1	PF01988.14	gi|336251687|ref|YP_004598918.1|	-	6.3e-19	68.3	16.2	1.8e-16	60.2	11.3	2.0	1	1	0	1	1	1	1	VIT	family
Romo1	PF10247.4	gi|336251687|ref|YP_004598918.1|	-	2.1	8.6	0.0	2.1	8.6	0.0	3.3	3	2	1	4	4	4	0	Reactive	mitochondrial	oxygen	species	modulator	1
DUF211	PF02680.9	gi|336251688|ref|YP_004598919.1|	-	2.1e-31	107.5	0.2	2.3e-31	107.4	0.1	1.0	1	0	0	1	1	1	1	Uncharacterized	ArCR,	COG1888
E1-E2_ATPase	PF00122.15	gi|336251690|ref|YP_004598921.1|	-	5.4e-73	244.8	2.1	1.4e-72	243.4	1.4	1.7	1	0	0	1	1	1	1	E1-E2	ATPase
Cation_ATPase_C	PF00689.16	gi|336251690|ref|YP_004598921.1|	-	1.4e-39	135.5	2.7	2.9e-39	134.4	1.9	1.5	1	0	0	1	1	1	1	Cation	transporting	ATPase,	C-terminus
Hydrolase	PF00702.21	gi|336251690|ref|YP_004598921.1|	-	1.8e-35	123.2	2.2	3.4e-35	122.3	1.5	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like2	PF13246.1	gi|336251690|ref|YP_004598921.1|	-	6.4e-20	70.9	0.0	1.4e-19	69.7	0.0	1.6	1	0	0	1	1	1	1	Putative	hydrolase	of	sodium-potassium	ATPase	alpha	subunit
Cation_ATPase_N	PF00690.21	gi|336251690|ref|YP_004598921.1|	-	1.8e-17	62.5	0.0	3.9e-17	61.4	0.0	1.6	1	0	0	1	1	1	1	Cation	transporter/ATPase,	N-terminus
HAD	PF12710.2	gi|336251690|ref|YP_004598921.1|	-	3e-17	63.4	0.4	8.7e-17	61.9	0.1	1.9	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|336251690|ref|YP_004598921.1|	-	2.9e-05	23.7	0.7	0.0011	18.6	0.2	2.1	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
E1-E2_ATPase	PF00122.15	gi|336251691|ref|YP_004598922.1|	-	1.7e-66	223.5	0.7	1.7e-66	223.5	0.5	2.5	3	0	0	3	3	3	1	E1-E2	ATPase
Cation_ATPase_C	PF00689.16	gi|336251691|ref|YP_004598922.1|	-	1e-38	132.6	7.0	1e-38	132.6	4.8	2.2	2	0	0	2	2	2	1	Cation	transporting	ATPase,	C-terminus
Hydrolase	PF00702.21	gi|336251691|ref|YP_004598922.1|	-	2.5e-35	122.8	0.1	6.4e-35	121.5	0.1	1.7	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like2	PF13246.1	gi|336251691|ref|YP_004598922.1|	-	1e-18	67.0	0.0	2e-18	66.1	0.0	1.5	1	0	0	1	1	1	1	Putative	hydrolase	of	sodium-potassium	ATPase	alpha	subunit
Cation_ATPase_N	PF00690.21	gi|336251691|ref|YP_004598922.1|	-	4.3e-18	64.5	0.0	1.2e-17	63.1	0.0	1.8	1	0	0	1	1	1	1	Cation	transporter/ATPase,	N-terminus
HAD	PF12710.2	gi|336251691|ref|YP_004598922.1|	-	1.9e-16	60.7	0.2	3.6e-16	59.9	0.2	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|336251691|ref|YP_004598922.1|	-	1.7e-08	34.3	0.4	3.9e-05	23.3	0.5	2.2	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
TrbC	PF04956.8	gi|336251691|ref|YP_004598922.1|	-	0.35	10.9	0.0	0.35	10.9	0.0	3.9	3	2	0	3	3	3	0	TrbC/VIRB2	family
CBS	PF00571.23	gi|336251692|ref|YP_004598923.1|	-	3.7e-30	103.4	2.2	5.7e-15	54.8	0.4	2.4	2	0	0	2	2	2	2	CBS	domain
MaoC_dehydratas	PF01575.14	gi|336251692|ref|YP_004598923.1|	-	3.1e-23	81.4	0.0	7.5e-23	80.2	0.0	1.7	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.1	gi|336251692|ref|YP_004598923.1|	-	1.7e-07	31.0	0.0	5.7e-07	29.3	0.0	1.9	1	1	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
4HBT	PF03061.17	gi|336251692|ref|YP_004598923.1|	-	0.00029	20.8	0.4	0.021	14.9	0.0	3.0	3	0	0	3	3	3	1	Thioesterase	superfamily
tRNA_anti-codon	PF01336.20	gi|336251692|ref|YP_004598923.1|	-	0.031	14.1	0.2	1	9.2	0.0	2.9	3	0	0	3	3	3	0	OB-fold	nucleic	acid	binding	domain
TruB_C	PF09142.6	gi|336251692|ref|YP_004598923.1|	-	0.034	13.7	0.0	0.76	9.4	0.0	2.9	3	0	0	3	3	3	0	tRNA	Pseudouridine	synthase	II,	C	terminal
Pyridox_ox_2	PF12900.2	gi|336251693|ref|YP_004598924.1|	-	1.5e-17	63.7	0.0	1.7e-17	63.5	0.0	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_oxidase	PF01243.15	gi|336251693|ref|YP_004598924.1|	-	0.0016	18.4	0.0	0.0019	18.1	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Usp	PF00582.21	gi|336251694|ref|YP_004598925.1|	-	5.8e-29	101.0	0.1	3.9e-28	98.4	0.1	1.8	1	1	0	1	1	1	1	Universal	stress	protein	family
Flavodoxin_5	PF12724.2	gi|336251695|ref|YP_004598926.1|	-	1.3e-37	128.9	0.0	1.9e-37	128.4	0.0	1.2	1	0	0	1	1	1	1	Flavodoxin	domain
Flavodoxin_1	PF00258.20	gi|336251695|ref|YP_004598926.1|	-	1.8e-05	24.7	0.1	3.1e-05	24.0	0.1	1.5	1	0	0	1	1	1	1	Flavodoxin
Flavodoxin_3	PF12641.2	gi|336251695|ref|YP_004598926.1|	-	0.00015	21.2	0.0	0.00027	20.4	0.0	1.4	1	1	0	1	1	1	1	Flavodoxin	domain
RICTOR_V	PF14668.1	gi|336251695|ref|YP_004598926.1|	-	0.032	14.1	0.0	0.055	13.3	0.0	1.4	1	0	0	1	1	1	0	Rapamycin-insensitive	companion	of	mTOR,	domain	5
PTS_IIB	PF02302.12	gi|336251695|ref|YP_004598926.1|	-	0.077	13.4	0.1	0.22	12.0	0.0	1.7	2	0	0	2	2	2	0	PTS	system,	Lactose/Cellobiose	specific	IIB	subunit
Flavodoxin_4	PF12682.2	gi|336251695|ref|YP_004598926.1|	-	0.11	11.8	0.1	10	5.4	0.1	3.1	2	2	1	3	3	3	0	Flavodoxin
DnaB_bind	PF10410.4	gi|336251695|ref|YP_004598926.1|	-	0.12	12.4	0.2	17	5.4	0.0	2.6	3	0	0	3	3	3	0	DnaB-helicase	binding	domain	of	primase
HTH_10	PF04967.7	gi|336251696|ref|YP_004598927.1|	-	7.9e-21	73.3	0.0	5.8e-19	67.4	0.0	2.5	2	0	0	2	2	2	1	HTH	DNA	binding	domain
GAF_2	PF13185.1	gi|336251696|ref|YP_004598927.1|	-	1.2e-15	58.2	1.2	8.2e-15	55.5	0.1	2.7	2	0	0	2	2	2	1	GAF	domain
PAS_9	PF13426.1	gi|336251696|ref|YP_004598927.1|	-	3.7e-12	46.5	0.1	1.6e-11	44.4	0.0	2.3	2	0	0	2	2	1	1	PAS	domain
PAS	PF00989.19	gi|336251696|ref|YP_004598927.1|	-	1.5e-10	40.8	1.0	3e-10	39.8	0.0	2.0	2	0	0	2	2	2	1	PAS	fold
PAS_4	PF08448.5	gi|336251696|ref|YP_004598927.1|	-	6.1e-09	35.8	1.0	6.1e-09	35.8	0.7	2.5	3	0	0	3	3	2	1	PAS	fold
GAF	PF01590.21	gi|336251696|ref|YP_004598927.1|	-	9.8e-08	32.2	0.3	5.1e-07	29.9	0.0	2.4	2	1	0	2	2	2	1	GAF	domain
GAF_3	PF13492.1	gi|336251696|ref|YP_004598927.1|	-	1e-06	28.8	0.1	4.2e-05	23.6	0.0	2.5	2	0	0	2	2	2	1	GAF	domain
MarR_2	PF12802.2	gi|336251696|ref|YP_004598927.1|	-	0.00039	20.0	0.8	0.27	10.9	0.0	3.2	3	0	0	3	3	3	1	MarR	family
PAS_10	PF13596.1	gi|336251696|ref|YP_004598927.1|	-	0.0013	18.9	0.0	0.0055	16.9	0.0	2.1	2	0	0	2	2	2	1	PAS	domain
Sigma70_r4	PF04545.11	gi|336251696|ref|YP_004598927.1|	-	0.0018	17.5	2.1	0.1	11.9	0.0	3.6	5	0	0	5	5	5	1	Sigma-70,	region	4
HTH_20	PF12840.2	gi|336251696|ref|YP_004598927.1|	-	0.0035	17.1	0.4	0.043	13.6	0.2	2.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|336251696|ref|YP_004598927.1|	-	0.027	14.4	0.0	1.8	8.5	0.0	2.7	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TrmB	PF01978.14	gi|336251696|ref|YP_004598927.1|	-	0.031	13.9	0.0	0.12	12.0	0.0	2.0	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
PqqD	PF05402.7	gi|336251696|ref|YP_004598927.1|	-	0.033	14.1	1.5	0.62	10.1	0.1	3.1	3	0	0	3	3	3	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
Aminotran_5	PF00266.14	gi|336251698|ref|YP_004598929.1|	-	3.5e-59	200.4	0.0	4.7e-59	199.9	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.16	gi|336251698|ref|YP_004598929.1|	-	0.00013	21.0	0.0	0.00054	19.0	0.0	1.9	2	1	0	2	2	2	1	Aminotransferase	class	I	and	II
Cys_Met_Meta_PP	PF01053.15	gi|336251698|ref|YP_004598929.1|	-	0.0018	16.6	0.0	0.0025	16.1	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.12	gi|336251698|ref|YP_004598929.1|	-	0.0029	16.6	0.4	0.0043	16.1	0.2	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Methyltransf_31	PF13847.1	gi|336251699|ref|YP_004598930.1|	-	3.6e-16	59.1	0.0	3.9e-16	58.9	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|336251699|ref|YP_004598930.1|	-	1.5e-12	47.8	0.0	2e-12	47.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|336251699|ref|YP_004598930.1|	-	5e-11	43.1	0.0	7.5e-11	42.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|336251699|ref|YP_004598930.1|	-	8.7e-11	41.8	0.1	1.4e-10	41.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|336251699|ref|YP_004598930.1|	-	5.6e-09	36.2	0.0	7.7e-09	35.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|336251699|ref|YP_004598930.1|	-	7.8e-09	35.9	0.0	1e-08	35.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|336251699|ref|YP_004598930.1|	-	1.2e-08	34.5	0.0	1.7e-08	34.0	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	small	domain
Met_10	PF02475.11	gi|336251699|ref|YP_004598930.1|	-	1e-06	28.5	0.0	1.3e-06	28.1	0.0	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
Ubie_methyltran	PF01209.13	gi|336251699|ref|YP_004598930.1|	-	4.1e-06	26.0	0.0	5e-06	25.8	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.1	gi|336251699|ref|YP_004598930.1|	-	4.2e-06	26.5	0.0	5e-06	26.3	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_4	PF02390.12	gi|336251699|ref|YP_004598930.1|	-	0.00019	20.5	0.0	0.0012	17.9	0.0	1.9	2	0	0	2	2	2	1	Putative	methyltransferase
FmrO	PF07091.6	gi|336251699|ref|YP_004598930.1|	-	0.002	17.1	0.0	0.0026	16.7	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	methyltransferase	(FmrO)
Methyltransf_32	PF13679.1	gi|336251699|ref|YP_004598930.1|	-	0.0088	15.7	0.0	0.012	15.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Fibrillarin	PF01269.12	gi|336251699|ref|YP_004598930.1|	-	0.015	14.2	0.0	0.034	13.0	0.0	1.5	2	0	0	2	2	2	0	Fibrillarin
PCMT	PF01135.14	gi|336251699|ref|YP_004598930.1|	-	0.016	14.7	0.0	0.024	14.1	0.0	1.3	1	1	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
UPF0020	PF01170.13	gi|336251699|ref|YP_004598930.1|	-	0.083	12.4	0.0	0.12	11.9	0.0	1.3	1	1	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
DUF2892	PF11127.3	gi|336251700|ref|YP_004598931.1|	-	3.4e-13	49.1	3.8	3.8e-13	49.0	2.7	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2892)
SseC	PF04888.7	gi|336251700|ref|YP_004598931.1|	-	1.3	8.3	4.9	1.3	8.3	3.4	1.2	1	0	0	1	1	1	0	Secretion	system	effector	C	(SseC)	like	family
Form-deh_trans	PF09163.6	gi|336251700|ref|YP_004598931.1|	-	3	7.4	7.3	0.42	10.1	1.2	2.0	1	1	1	2	2	2	0	Formate	dehydrogenase	N,	transmembrane
TcdA_TcdB_pore	PF12920.2	gi|336251700|ref|YP_004598931.1|	-	9.6	3.9	7.0	11	3.8	4.8	1.0	1	0	0	1	1	1	0	TcdA/TcdB	pore	forming	domain
Peptidase_M20	PF01546.23	gi|336251701|ref|YP_004598932.1|	-	2.7e-33	115.0	0.1	3.9e-33	114.5	0.1	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|336251701|ref|YP_004598932.1|	-	1.3e-17	63.5	0.0	4.4e-17	61.8	0.0	1.8	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.12	gi|336251701|ref|YP_004598932.1|	-	2.6e-06	27.3	0.1	3.2e-05	23.7	0.0	2.1	2	0	0	2	2	2	1	Peptidase	family	M28
Peptidase_M42	PF05343.9	gi|336251701|ref|YP_004598932.1|	-	0.0086	14.8	0.1	0.8	8.4	0.0	2.3	2	0	0	2	2	2	2	M42	glutamyl	aminopeptidase
Pyr_redox_2	PF07992.9	gi|336251702|ref|YP_004598933.1|	-	3.3e-36	125.0	5.9	4.7e-18	65.8	0.0	3.4	2	1	1	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|336251702|ref|YP_004598933.1|	-	2.5e-22	79.0	5.0	8e-19	67.8	0.3	3.5	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|336251702|ref|YP_004598933.1|	-	5e-16	58.6	0.1	3.6e-15	55.9	0.0	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
DAO	PF01266.19	gi|336251702|ref|YP_004598933.1|	-	3.1e-13	49.3	9.2	0.0011	17.9	0.7	4.2	4	0	0	4	4	4	4	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.1	gi|336251702|ref|YP_004598933.1|	-	8e-11	42.3	0.2	4.7e-05	23.5	0.0	3.2	1	1	2	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|336251702|ref|YP_004598933.1|	-	2.1e-09	36.3	0.4	0.032	12.7	0.0	4.1	3	1	1	4	4	4	4	HI0933-like	protein
NAD_binding_8	PF13450.1	gi|336251702|ref|YP_004598933.1|	-	2.2e-08	34.0	0.1	0.0058	16.6	0.0	2.8	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
NAD_binding_9	PF13454.1	gi|336251702|ref|YP_004598933.1|	-	0.00064	19.5	1.8	0.47	10.2	0.0	3.2	3	1	0	3	3	3	2	FAD-NAD(P)-binding
3HCDH_N	PF02737.13	gi|336251702|ref|YP_004598933.1|	-	0.001	18.7	0.1	0.0022	17.6	0.1	1.6	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.9	gi|336251702|ref|YP_004598933.1|	-	0.0028	17.0	0.1	0.0072	15.7	0.1	1.7	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_7	PF13241.1	gi|336251702|ref|YP_004598933.1|	-	0.0045	17.2	0.4	1.6	9.0	0.0	2.6	2	0	0	2	2	2	1	Putative	NAD(P)-binding
FAD_oxidored	PF12831.2	gi|336251702|ref|YP_004598933.1|	-	0.0074	15.4	10.3	0.052	12.6	0.0	3.2	3	1	2	5	5	5	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|336251702|ref|YP_004598933.1|	-	0.014	14.2	9.6	0.11	11.2	0.0	3.7	1	1	2	3	3	3	0	FAD	binding	domain
TrkA_N	PF02254.13	gi|336251702|ref|YP_004598933.1|	-	0.017	15.1	0.1	1.6	8.7	0.0	3.0	3	0	0	3	3	3	0	TrkA-N	domain
GIDA	PF01134.17	gi|336251702|ref|YP_004598933.1|	-	0.024	13.5	4.0	0.41	9.4	0.1	2.7	2	1	0	3	3	3	0	Glucose	inhibited	division	protein	A
Lycopene_cycl	PF05834.7	gi|336251702|ref|YP_004598933.1|	-	0.057	12.3	0.9	3.2	6.5	0.0	2.8	2	1	1	3	3	3	0	Lycopene	cyclase	protein
FAD_binding_3	PF01494.14	gi|336251702|ref|YP_004598933.1|	-	0.059	12.4	0.4	0.059	12.4	0.3	2.2	2	1	0	3	3	3	0	FAD	binding	domain
AlaDh_PNT_C	PF01262.16	gi|336251702|ref|YP_004598933.1|	-	0.12	11.9	5.9	0.16	11.5	0.8	3.3	3	1	0	3	3	3	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
DUF3918	PF13056.1	gi|336251703|ref|YP_004598934.1|	-	0.18	11.1	0.6	22	4.4	0.8	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3918)
DUF1469	PF07332.6	gi|336251703|ref|YP_004598934.1|	-	0.94	9.2	6.1	1	9.0	4.2	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
TrbC	PF04956.8	gi|336251703|ref|YP_004598934.1|	-	1.9	8.5	6.7	5.8	6.9	0.8	1.5	1	1	1	2	2	2	0	TrbC/VIRB2	family
DUF302	PF03625.9	gi|336251704|ref|YP_004598935.1|	-	3.5e-18	64.9	0.0	5.9e-18	64.1	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF302
Methyltransf_11	PF08241.7	gi|336251705|ref|YP_004598936.1|	-	1.4e-20	73.5	0.0	2.1e-20	72.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|336251705|ref|YP_004598936.1|	-	4.2e-12	45.8	0.0	5.1e-12	45.6	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|336251705|ref|YP_004598936.1|	-	1.2e-11	45.1	0.0	2.1e-11	44.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|336251705|ref|YP_004598936.1|	-	2.3e-11	43.9	0.0	4.1e-11	43.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|336251705|ref|YP_004598936.1|	-	2.8e-11	43.4	0.0	7.2e-11	42.0	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|336251705|ref|YP_004598936.1|	-	5.1e-09	36.1	0.1	9.1e-09	35.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|336251705|ref|YP_004598936.1|	-	4.3e-07	30.3	0.0	6.4e-07	29.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|336251705|ref|YP_004598936.1|	-	1.3e-06	27.7	0.0	2e-06	27.1	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
RrnaAD	PF00398.15	gi|336251705|ref|YP_004598936.1|	-	2.4e-06	26.7	0.0	3.1e-06	26.4	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
FtsJ	PF01728.14	gi|336251705|ref|YP_004598936.1|	-	2.6e-05	24.2	0.0	5e-05	23.3	0.0	1.5	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
DREV	PF05219.7	gi|336251705|ref|YP_004598936.1|	-	0.00015	20.7	0.0	0.00024	20.0	0.0	1.2	1	0	0	1	1	1	1	DREV	methyltransferase
Methyltransf_8	PF05148.10	gi|336251705|ref|YP_004598936.1|	-	0.00034	20.3	0.0	0.00078	19.1	0.0	1.7	1	1	0	1	1	1	1	Hypothetical	methyltransferase
MTS	PF05175.9	gi|336251705|ref|YP_004598936.1|	-	0.00067	19.0	0.0	0.0012	18.2	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_24	PF13578.1	gi|336251705|ref|YP_004598936.1|	-	0.044	14.6	0.2	0.081	13.7	0.1	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
Gp37_Gp68	PF07505.6	gi|336251705|ref|YP_004598936.1|	-	0.059	12.5	0.0	0.13	11.3	0.0	1.5	1	1	0	1	1	1	0	Phage	protein	Gp37/Gp68
Cu-oxidase_3	PF07732.10	gi|336251706|ref|YP_004598937.1|	-	2.5e-42	143.3	0.0	8.1e-32	109.4	0.0	3.2	3	0	0	3	3	3	3	Multicopper	oxidase
Cu-oxidase_2	PF07731.9	gi|336251706|ref|YP_004598937.1|	-	3e-33	114.2	1.7	2.9e-23	81.8	1.6	5.3	4	2	0	4	4	4	3	Multicopper	oxidase
Cu-oxidase	PF00394.17	gi|336251706|ref|YP_004598937.1|	-	3.1e-21	75.9	0.0	6.6e-20	71.6	0.0	2.4	2	0	0	2	2	2	1	Multicopper	oxidase
Cupredoxin_1	PF13473.1	gi|336251706|ref|YP_004598937.1|	-	0.00065	19.5	0.0	0.11	12.3	0.0	2.8	3	0	0	3	3	3	1	Cupredoxin-like	domain
DUF2243	PF10002.4	gi|336251707|ref|YP_004598938.1|	-	1.4e-49	167.6	8.5	1.6e-49	167.3	5.9	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2243)
YrhK	PF14145.1	gi|336251707|ref|YP_004598938.1|	-	0.084	12.5	0.3	0.45	10.2	0.0	2.1	2	0	0	2	2	2	0	YrhK-like	protein
DUF202	PF02656.10	gi|336251707|ref|YP_004598938.1|	-	0.55	10.4	5.0	0.75	10.0	0.3	2.7	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF202)
Thioredoxin_4	PF13462.1	gi|336251708|ref|YP_004598939.1|	-	9.4e-26	90.7	0.0	1.1e-25	90.5	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
DSBA	PF01323.15	gi|336251708|ref|YP_004598939.1|	-	8.2e-13	48.3	0.3	1e-07	31.7	0.0	2.1	1	1	1	2	2	2	2	DSBA-like	thioredoxin	domain
Thioredoxin_2	PF13098.1	gi|336251708|ref|YP_004598939.1|	-	2.5e-12	46.9	0.0	5.4e-12	45.8	0.0	1.5	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_5	PF13743.1	gi|336251708|ref|YP_004598939.1|	-	0.00031	20.3	0.0	0.0022	17.6	0.0	1.8	1	1	1	2	2	2	1	Thioredoxin
DUF2631	PF10939.3	gi|336251708|ref|YP_004598939.1|	-	0.052	13.3	0.0	0.12	12.2	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2631)
TAT_signal	PF10518.4	gi|336251708|ref|YP_004598939.1|	-	0.11	12.5	0.4	0.34	11.0	0.2	1.8	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Thioredoxin	PF00085.15	gi|336251708|ref|YP_004598939.1|	-	0.11	12.1	0.0	0.23	11.1	0.0	1.5	1	0	0	1	1	1	0	Thioredoxin
5_nucleotid_C	PF02872.13	gi|336251709|ref|YP_004598940.1|	-	6e-17	62.0	0.0	1.1e-16	61.1	0.0	1.3	1	0	0	1	1	1	1	5'-nucleotidase,	C-terminal	domain
Metallophos	PF00149.23	gi|336251709|ref|YP_004598940.1|	-	5.9e-06	25.8	2.3	7.3e-05	22.2	1.8	2.4	2	1	0	2	2	2	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.2	gi|336251709|ref|YP_004598940.1|	-	0.0012	18.7	2.5	0.003	17.4	1.8	1.7	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Acetyltransf_7	PF13508.1	gi|336251709|ref|YP_004598940.1|	-	0.1	12.7	0.0	0.25	11.5	0.0	1.6	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Cu-oxidase_2	PF07731.9	gi|336251710|ref|YP_004598941.1|	-	2.2e-21	75.7	1.8	2.2e-21	75.7	1.3	1.8	2	0	0	2	2	2	1	Multicopper	oxidase
Cu-oxidase_3	PF07732.10	gi|336251710|ref|YP_004598941.1|	-	1.7e-13	50.2	1.4	7.1e-06	25.7	0.0	3.4	2	1	1	3	3	3	2	Multicopper	oxidase
Cu-oxidase	PF00394.17	gi|336251710|ref|YP_004598941.1|	-	0.02	14.7	0.0	0.27	11.1	0.0	2.4	1	1	0	1	1	1	0	Multicopper	oxidase
TAT_signal	PF10518.4	gi|336251710|ref|YP_004598941.1|	-	0.12	12.4	0.8	0.25	11.4	0.6	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF4332	PF14229.1	gi|336251710|ref|YP_004598941.1|	-	0.14	12.1	0.0	0.24	11.3	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4332)
Response_reg	PF00072.19	gi|336251713|ref|YP_004598944.1|	-	4.6e-14	52.3	0.0	5.8e-14	52.0	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HTH_20	PF12840.2	gi|336251714|ref|YP_004598945.1|	-	6.7e-07	29.0	0.1	1.2e-06	28.2	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|336251714|ref|YP_004598945.1|	-	2.8e-06	26.9	0.0	4.6e-06	26.2	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|336251714|ref|YP_004598945.1|	-	1.5e-05	24.2	0.0	2.5e-05	23.5	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.7	gi|336251714|ref|YP_004598945.1|	-	9.9e-05	21.9	0.0	0.00018	21.0	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
FUR	PF01475.14	gi|336251714|ref|YP_004598945.1|	-	0.0001	22.2	0.0	0.00013	21.8	0.0	1.2	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
MarR_2	PF12802.2	gi|336251714|ref|YP_004598945.1|	-	0.0017	17.9	0.1	0.0028	17.2	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.5	gi|336251714|ref|YP_004598945.1|	-	0.002	17.6	0.0	0.0034	16.9	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|336251714|ref|YP_004598945.1|	-	0.0046	16.4	0.1	0.0085	15.6	0.1	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
PadR	PF03551.9	gi|336251714|ref|YP_004598945.1|	-	0.0055	16.4	0.0	0.0096	15.6	0.0	1.5	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_23	PF13384.1	gi|336251714|ref|YP_004598945.1|	-	0.0057	16.2	0.0	0.01	15.4	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
DUF2250	PF10007.4	gi|336251714|ref|YP_004598945.1|	-	0.011	15.5	0.0	0.015	15.2	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
ArsR	PF09824.4	gi|336251714|ref|YP_004598945.1|	-	0.02	14.2	0.0	0.026	13.8	0.0	1.2	1	1	0	1	1	1	0	ArsR	transcriptional	regulator
Phage_rep_org_N	PF09681.5	gi|336251714|ref|YP_004598945.1|	-	0.03	13.8	0.0	0.044	13.3	0.0	1.3	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
HTH_27	PF13463.1	gi|336251714|ref|YP_004598945.1|	-	0.045	14.0	0.0	0.075	13.3	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_5	PF01022.15	gi|336251714|ref|YP_004598945.1|	-	0.06	13.0	0.0	0.1	12.2	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DUF2857	PF11198.3	gi|336251714|ref|YP_004598945.1|	-	0.12	11.8	0.0	0.17	11.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2857)
DUF2776	PF10951.3	gi|336251715|ref|YP_004598946.1|	-	0.01	14.9	1.8	0.012	14.7	1.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2776)
Corona_NS3b	PF03053.9	gi|336251715|ref|YP_004598946.1|	-	0.037	13.5	0.4	0.053	13.0	0.1	1.3	1	1	0	1	1	1	0	ORF3b	coronavirus	protein
PMT_2	PF13231.1	gi|336251715|ref|YP_004598946.1|	-	0.29	11.0	6.4	1.9	8.3	0.8	2.0	1	1	1	2	2	2	0	Dolichyl-phosphate-mannose-protein	mannosyltransferase
SCO1-SenC	PF02630.9	gi|336251716|ref|YP_004598947.1|	-	3.1e-12	46.4	0.0	4.1e-12	46.0	0.0	1.1	1	0	0	1	1	1	1	SCO1/SenC
AhpC-TSA	PF00578.16	gi|336251716|ref|YP_004598947.1|	-	0.0008	19.0	0.0	0.0013	18.4	0.0	1.4	1	1	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|336251716|ref|YP_004598947.1|	-	0.015	14.8	0.0	0.021	14.3	0.0	1.4	1	1	0	1	1	1	0	Redoxin
TauE	PF01925.14	gi|336251717|ref|YP_004598948.1|	-	1.6e-16	60.5	32.6	1.6e-16	60.5	22.6	1.5	2	0	0	2	2	2	1	Sulfite	exporter	TauE/SafE
Thioredoxin	PF00085.15	gi|336251718|ref|YP_004598949.1|	-	3.9e-15	55.4	0.0	4.6e-15	55.1	0.0	1.0	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|336251718|ref|YP_004598949.1|	-	8.1e-07	29.2	0.0	0.00026	21.1	0.0	2.1	1	1	1	2	2	2	2	Thioredoxin-like	domain
Thioredoxin_3	PF13192.1	gi|336251718|ref|YP_004598949.1|	-	0.00072	19.3	0.0	0.001	18.8	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin	domain
TrbC_Ftype	PF09673.5	gi|336251718|ref|YP_004598949.1|	-	0.0048	16.4	0.0	0.0052	16.3	0.0	1.1	1	0	0	1	1	1	1	Type-F	conjugative	transfer	system	pilin	assembly	protein
HyaE	PF07449.6	gi|336251718|ref|YP_004598949.1|	-	0.025	14.4	0.0	0.039	13.8	0.0	1.3	1	0	0	1	1	1	0	Hydrogenase-1	expression	protein	HyaE
Thioredoxin_8	PF13905.1	gi|336251718|ref|YP_004598949.1|	-	0.039	14.0	0.0	1.4	9.0	0.0	2.1	1	1	1	2	2	2	0	Thioredoxin-like
TraF	PF13728.1	gi|336251718|ref|YP_004598949.1|	-	0.043	13.3	0.0	0.14	11.6	0.0	1.7	1	1	0	1	1	1	0	F	plasmid	transfer	operon	protein
DUF836	PF05768.9	gi|336251718|ref|YP_004598949.1|	-	0.079	13.2	0.0	0.1	12.8	0.0	1.3	1	0	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
Pyr_redox_2	PF07992.9	gi|336251719|ref|YP_004598950.1|	-	5.3e-34	117.8	0.4	7.7e-34	117.3	0.3	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|336251719|ref|YP_004598950.1|	-	2.4e-24	85.4	0.1	4.2e-24	84.6	0.1	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.22	gi|336251719|ref|YP_004598950.1|	-	1.2e-18	67.2	0.3	7.2e-15	55.1	0.0	3.1	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|336251719|ref|YP_004598950.1|	-	8.5e-06	25.9	0.3	3.3e-05	24.0	0.2	2.0	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.1	gi|336251719|ref|YP_004598950.1|	-	0.00019	20.4	0.0	0.00042	19.3	0.0	1.5	1	0	0	1	1	1	1	L-lysine	6-monooxygenase	(NADPH-requiring)
XdhC_C	PF13478.1	gi|336251719|ref|YP_004598950.1|	-	0.0044	17.3	0.0	0.011	16.0	0.0	1.7	1	0	0	1	1	1	1	XdhC	Rossmann	domain
3HCDH_N	PF02737.13	gi|336251719|ref|YP_004598950.1|	-	0.0046	16.6	0.3	0.35	10.5	0.0	2.6	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
FAD_binding_2	PF00890.19	gi|336251719|ref|YP_004598950.1|	-	0.0047	15.8	2.5	0.0047	15.8	1.7	1.8	2	0	0	2	2	2	1	FAD	binding	domain
DAO	PF01266.19	gi|336251719|ref|YP_004598950.1|	-	0.013	14.4	4.7	0.055	12.3	0.2	2.9	3	0	0	3	3	3	0	FAD	dependent	oxidoreductase
NAD_binding_7	PF13241.1	gi|336251719|ref|YP_004598950.1|	-	0.017	15.3	0.0	0.15	12.3	0.0	2.3	2	0	0	2	2	2	0	Putative	NAD(P)-binding
Bac_transf	PF02397.11	gi|336251719|ref|YP_004598950.1|	-	0.069	12.2	0.0	0.13	11.3	0.0	1.3	1	0	0	1	1	1	0	Bacterial	sugar	transferase
Zip	PF02535.17	gi|336251720|ref|YP_004598951.1|	-	1.2e-20	73.8	15.0	5.3e-19	68.3	10.3	2.5	1	1	0	1	1	1	1	ZIP	Zinc	transporter
TrmB	PF01978.14	gi|336251721|ref|YP_004598952.1|	-	8.8e-16	57.3	0.0	1.2e-15	56.9	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Penicillinase_R	PF03965.11	gi|336251721|ref|YP_004598952.1|	-	5.6e-05	23.1	0.1	7.8e-05	22.7	0.0	1.2	1	0	0	1	1	1	1	Penicillinase	repressor
HTH_IclR	PF09339.5	gi|336251721|ref|YP_004598952.1|	-	0.0001	21.8	0.0	0.00019	20.9	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.17	gi|336251721|ref|YP_004598952.1|	-	0.00018	21.1	0.1	0.00048	19.7	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.7	gi|336251721|ref|YP_004598952.1|	-	0.00025	20.6	0.0	0.00045	19.7	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.2	gi|336251721|ref|YP_004598952.1|	-	0.0025	17.5	0.0	0.004	16.9	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|336251721|ref|YP_004598952.1|	-	0.0026	18.0	0.0	0.0035	17.6	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_38	PF13936.1	gi|336251721|ref|YP_004598952.1|	-	0.0032	17.0	0.0	0.007	15.9	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|336251721|ref|YP_004598952.1|	-	0.0032	16.8	0.0	0.0054	16.0	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|336251721|ref|YP_004598952.1|	-	0.0051	16.4	0.0	0.0086	15.7	0.0	1.4	1	0	0	1	1	1	1	MarR	family
2OG-Fe_Oxy_2	PF10014.4	gi|336251721|ref|YP_004598952.1|	-	0.0068	15.8	0.2	0.0089	15.4	0.1	1.2	1	0	0	1	1	1	1	2OG-Fe	dioxygenase
RuvB_C	PF05491.8	gi|336251721|ref|YP_004598952.1|	-	0.026	14.1	0.0	0.048	13.2	0.0	1.4	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	C-terminus
Rrf2	PF02082.15	gi|336251721|ref|YP_004598952.1|	-	0.049	13.7	0.0	0.15	12.2	0.0	1.7	2	0	0	2	2	2	0	Transcriptional	regulator
TFIIE_alpha	PF02002.12	gi|336251721|ref|YP_004598952.1|	-	0.064	12.7	0.3	0.094	12.2	0.2	1.3	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_29	PF13551.1	gi|336251721|ref|YP_004598952.1|	-	0.074	13.2	0.0	0.1	12.7	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_23	PF13384.1	gi|336251721|ref|YP_004598952.1|	-	0.079	12.6	0.0	0.13	11.9	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
DUF3175	PF11373.3	gi|336251721|ref|YP_004598952.1|	-	0.096	12.7	0.0	0.81	9.7	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3175)
UMPH-1	PF05822.7	gi|336251721|ref|YP_004598952.1|	-	0.13	11.5	0.2	0.16	11.2	0.1	1.3	1	0	0	1	1	1	0	Pyrimidine	5'-nucleotidase	(UMPH-1)
TauE	PF01925.14	gi|336251722|ref|YP_004598953.1|	-	1.4e-38	132.7	26.2	1.4e-38	132.7	18.1	1.8	1	1	1	2	2	2	1	Sulfite	exporter	TauE/SafE
UPF0016	PF01169.14	gi|336251723|ref|YP_004598954.1|	-	0.16	12.0	1.0	0.16	12.1	0.7	1.0	1	0	0	1	1	1	0	Uncharacterized	protein	family	UPF0016
Usp	PF00582.21	gi|336251724|ref|YP_004598955.1|	-	2e-43	147.9	2.6	2.8e-25	89.1	0.0	2.1	2	0	0	2	2	2	2	Universal	stress	protein	family
DUF1538	PF07556.6	gi|336251725|ref|YP_004598956.1|	-	0.11	11.6	1.2	0.13	11.3	0.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1538)
IncA	PF04156.9	gi|336251725|ref|YP_004598956.1|	-	0.16	11.5	0.8	0.16	11.5	0.5	1.0	1	0	0	1	1	1	0	IncA	protein
Ion_trans_2	PF07885.11	gi|336251726|ref|YP_004598957.1|	-	1.5e-07	31.0	7.8	1.5e-07	31.0	5.4	2.2	2	1	1	3	3	3	1	Ion	channel
SHOCT	PF09851.4	gi|336251727|ref|YP_004598958.1|	-	1.6e-08	33.7	2.8	2.1e-08	33.3	1.9	1.2	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.6	gi|336251727|ref|YP_004598958.1|	-	4.6e-05	23.0	1.3	6.5e-05	22.6	0.9	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
DUF1469	PF07332.6	gi|336251727|ref|YP_004598958.1|	-	0.0051	16.5	4.6	0.0072	16.0	3.2	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1469)
NfeD	PF01957.13	gi|336251727|ref|YP_004598958.1|	-	0.013	15.6	1.3	0.015	15.4	0.9	1.1	1	0	0	1	1	1	0	NfeD-like	C-terminal,	partner-binding
DUF4583	PF15190.1	gi|336251727|ref|YP_004598958.1|	-	0.072	12.7	2.0	0.23	11.1	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4583)
DUF4131	PF13567.1	gi|336251727|ref|YP_004598958.1|	-	0.11	11.8	0.2	0.14	11.5	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
DUF4381	PF14316.1	gi|336251727|ref|YP_004598958.1|	-	0.26	11.4	0.1	0.26	11.4	0.1	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4381)
ABC2_membrane_4	PF12730.2	gi|336251727|ref|YP_004598958.1|	-	0.34	10.0	6.6	0.44	9.6	4.6	1.1	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
DctQ	PF04290.7	gi|336251727|ref|YP_004598958.1|	-	0.4	10.4	8.1	0.53	10.0	5.6	1.1	1	0	0	1	1	1	0	Tripartite	ATP-independent	periplasmic	transporters,	DctQ	component
ABC2_membrane_3	PF12698.2	gi|336251727|ref|YP_004598958.1|	-	0.77	8.7	5.1	1.1	8.2	3.5	1.2	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
FtsX	PF02687.16	gi|336251727|ref|YP_004598958.1|	-	0.81	9.4	8.2	1.4	8.6	0.1	2.1	2	0	0	2	2	2	0	FtsX-like	permease	family
Tad	PF13400.1	gi|336251727|ref|YP_004598958.1|	-	5	7.2	11.9	5.6	7.0	0.2	2.5	2	0	0	2	2	2	0	Putative	Flp	pilus-assembly	TadE/G-like
DUF326	PF03860.11	gi|336251728|ref|YP_004598959.1|	-	9.9e-06	25.0	47.4	0.0019	17.8	3.5	4.9	3	2	1	4	4	4	4	Domain	of	Unknown	Function	(DUF326)
DUF2062	PF09835.4	gi|336251729|ref|YP_004598960.1|	-	0.017	14.7	0.0	0.02	14.5	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2062)
Cyd_oper_YbgE	PF09600.5	gi|336251729|ref|YP_004598960.1|	-	0.29	11.3	2.9	0.38	10.9	2.0	1.1	1	0	0	1	1	1	0	Cyd	operon	protein	YbgE	(Cyd_oper_YbgE)
DUF1641	PF07849.6	gi|336251730|ref|YP_004598961.1|	-	2.9e-14	52.3	0.2	5.2e-14	51.5	0.1	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1641)
LRR_9	PF14580.1	gi|336251730|ref|YP_004598961.1|	-	0.094	12.2	1.5	0.14	11.7	1.1	1.2	1	0	0	1	1	1	0	Leucine-rich	repeat
DUF1522	PF07482.6	gi|336251730|ref|YP_004598961.1|	-	4.5	7.4	9.9	1.2	9.3	0.7	2.3	1	1	1	2	2	2	0	Domain	of	Unknown	Function	(DUF1522)
Pyr_redox_2	PF07992.9	gi|336251731|ref|YP_004598962.1|	-	2.6e-16	60.0	0.0	3.7e-16	59.6	0.0	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|336251731|ref|YP_004598962.1|	-	2.2e-06	27.5	1.4	0.01	15.6	0.0	2.6	1	1	1	2	2	2	2	FAD-NAD(P)-binding
Pyr_redox	PF00070.22	gi|336251731|ref|YP_004598962.1|	-	0.048	14.0	0.3	18	5.8	0.1	2.6	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|336251731|ref|YP_004598962.1|	-	0.15	10.5	0.0	22	3.3	0.0	2.7	3	0	0	3	3	3	0	HI0933-like	protein
NAD_Gly3P_dh_N	PF01210.18	gi|336251731|ref|YP_004598962.1|	-	0.16	11.6	0.0	0.28	10.9	0.0	1.3	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
TusA	PF01206.12	gi|336251732|ref|YP_004598963.1|	-	1.2e-17	63.2	0.0	1.3e-17	63.1	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
SHOCT	PF09851.4	gi|336251733|ref|YP_004598964.1|	-	4.2e-11	41.9	2.6	5.6e-11	41.5	1.8	1.2	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.6	gi|336251733|ref|YP_004598964.1|	-	0.0016	18.1	4.8	0.0029	17.3	3.3	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
UbiA	PF01040.13	gi|336251733|ref|YP_004598964.1|	-	0.0031	16.7	0.2	0.0039	16.4	0.1	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
DUF4231	PF14015.1	gi|336251733|ref|YP_004598964.1|	-	0.021	14.8	0.0	0.027	14.4	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4231)
GvpG	PF05120.7	gi|336251733|ref|YP_004598964.1|	-	0.077	12.8	0.1	0.098	12.4	0.0	1.2	1	0	0	1	1	1	0	Gas	vesicle	protein	G
DUF1469	PF07332.6	gi|336251733|ref|YP_004598964.1|	-	0.11	12.2	4.9	0.33	10.7	3.4	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
Thioredoxin	PF00085.15	gi|336251734|ref|YP_004598965.1|	-	1.7e-25	88.7	0.0	2.3e-25	88.2	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|336251734|ref|YP_004598965.1|	-	5.2e-09	36.2	0.4	7.8e-08	32.5	0.3	2.2	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_7	PF13899.1	gi|336251734|ref|YP_004598965.1|	-	2.2e-05	24.4	0.6	4.2e-05	23.4	0.1	1.7	2	0	0	2	2	2	1	Thioredoxin-like
DSBA	PF01323.15	gi|336251734|ref|YP_004598965.1|	-	0.00012	21.6	0.4	0.0002	20.9	0.1	1.6	1	1	0	1	1	1	1	DSBA-like	thioredoxin	domain
Thioredoxin_8	PF13905.1	gi|336251734|ref|YP_004598965.1|	-	0.00014	21.8	0.0	0.0077	16.3	0.0	2.2	1	1	1	2	2	2	1	Thioredoxin-like
Thioredoxin_9	PF14595.1	gi|336251734|ref|YP_004598965.1|	-	0.00073	19.1	0.1	0.0013	18.3	0.1	1.6	1	1	0	1	1	1	1	Thioredoxin
TraF	PF13728.1	gi|336251734|ref|YP_004598965.1|	-	0.0018	17.7	0.0	0.0029	17.1	0.0	1.3	1	0	0	1	1	1	1	F	plasmid	transfer	operon	protein
AhpC-TSA	PF00578.16	gi|336251734|ref|YP_004598965.1|	-	0.002	17.8	0.0	0.0028	17.3	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|336251734|ref|YP_004598965.1|	-	0.0042	16.6	0.0	0.0058	16.1	0.0	1.2	1	0	0	1	1	1	1	Redoxin
Glutaredoxin	PF00462.19	gi|336251734|ref|YP_004598965.1|	-	0.0095	15.9	0.1	0.018	14.9	0.0	1.5	1	0	0	1	1	1	1	Glutaredoxin
Abhydrolase_6	PF12697.2	gi|336251734|ref|YP_004598965.1|	-	0.085	12.7	0.0	0.099	12.5	0.0	1.1	1	0	0	1	1	1	0	Alpha/beta	hydrolase	family
Thioredoxin_3	PF13192.1	gi|336251734|ref|YP_004598965.1|	-	0.089	12.6	0.0	0.14	11.9	0.0	1.4	1	0	0	1	1	1	0	Thioredoxin	domain
Unstab_antitox	PF09720.5	gi|336251734|ref|YP_004598965.1|	-	0.32	10.7	2.8	0.29	10.8	0.8	1.8	2	0	0	2	2	2	0	Putative	addiction	module	component
DUF1684	PF07920.6	gi|336251735|ref|YP_004598966.1|	-	1.3e-55	187.1	0.1	1.6e-55	186.8	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1684)
DUF2749	PF10907.3	gi|336251735|ref|YP_004598966.1|	-	0.028	14.2	0.0	0.047	13.5	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2749)
DUF393	PF04134.7	gi|336251737|ref|YP_004598968.1|	-	2.4e-14	54.4	0.0	2.7e-14	54.2	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF393
PHO4	PF01384.15	gi|336251738|ref|YP_004598969.1|	-	2.2e-38	131.7	37.4	2.2e-38	131.7	25.9	1.9	1	1	0	1	1	1	1	Phosphate	transporter	family
Sulf_transp	PF04143.9	gi|336251739|ref|YP_004598970.1|	-	2.9e-10	39.9	10.0	2.9e-10	39.9	6.9	2.8	3	0	0	3	3	3	2	Sulphur	transport
UbiA	PF01040.13	gi|336251739|ref|YP_004598970.1|	-	0.52	9.4	7.7	2.1	7.5	0.8	2.1	2	0	0	2	2	2	0	UbiA	prenyltransferase	family
DUF4341	PF14241.1	gi|336251740|ref|YP_004598971.1|	-	8.4e-18	63.8	7.6	5.8e-16	57.9	2.0	2.4	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4341)
Sulf_transp	PF04143.9	gi|336251740|ref|YP_004598971.1|	-	1.1e-11	44.5	7.7	1.1e-11	44.5	5.3	2.9	3	1	0	3	3	3	2	Sulphur	transport
DUF4282	PF14110.1	gi|336251740|ref|YP_004598971.1|	-	9.9	6.4	12.9	2.2	8.5	3.4	2.8	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4282)
Lactamase_B	PF00753.22	gi|336251741|ref|YP_004598972.1|	-	1.7e-19	70.2	5.3	2.6e-19	69.6	3.7	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Rhodanese	PF00581.15	gi|336251741|ref|YP_004598972.1|	-	6.4e-12	45.8	0.0	1.3e-11	44.8	0.0	1.5	1	0	0	1	1	1	1	Rhodanese-like	domain
Lactamase_B_2	PF12706.2	gi|336251741|ref|YP_004598972.1|	-	0.003	17.1	0.2	0.011	15.2	0.1	1.7	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Toxin_61	PF15538.1	gi|336251741|ref|YP_004598972.1|	-	0.0069	16.3	0.0	0.013	15.5	0.0	1.4	1	0	0	1	1	1	1	Putative	toxin	61
TusA	PF01206.12	gi|336251742|ref|YP_004598973.1|	-	3e-22	78.0	0.0	3.4e-22	77.8	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.4	gi|336251742|ref|YP_004598973.1|	-	0.0012	18.3	0.1	0.0029	17.1	0.0	1.6	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2249)
DrsE_2	PF13686.1	gi|336251743|ref|YP_004598974.1|	-	2.4e-53	179.9	0.6	3.1e-53	179.5	0.4	1.1	1	0	0	1	1	1	1	DsrE/DsrF/DrsH-like	family
DrsE	PF02635.10	gi|336251743|ref|YP_004598974.1|	-	1.8e-05	24.7	0.1	0.00025	21.0	0.0	2.3	1	1	0	1	1	1	1	DsrE/DsrF-like	family
DUF2937	PF11157.3	gi|336251743|ref|YP_004598974.1|	-	0.11	11.8	0.0	0.19	11.0	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2937)
EamA	PF00892.15	gi|336251745|ref|YP_004598976.1|	-	1.2e-13	51.2	15.6	1.4e-13	50.9	10.8	1.1	1	0	0	1	1	1	1	EamA-like	transporter	family
TPT	PF03151.11	gi|336251745|ref|YP_004598976.1|	-	0.17	11.4	13.2	0.32	10.6	9.1	1.6	1	1	0	1	1	1	0	Triose-phosphate	Transporter	family
EmrE	PF13536.1	gi|336251745|ref|YP_004598976.1|	-	2.6	8.2	18.4	0.44	10.7	9.8	1.7	2	0	0	2	2	2	0	Multidrug	resistance	efflux	transporter
DUF937	PF06078.6	gi|336251748|ref|YP_004598979.1|	-	0.004	17.3	0.3	0.0054	16.9	0.2	1.2	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF937)
HTH_20	PF12840.2	gi|336251748|ref|YP_004598979.1|	-	0.0059	16.3	0.1	0.012	15.4	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Phage_integrase	PF00589.17	gi|336251749|ref|YP_004598980.1|	-	1.8e-06	27.7	0.0	3.6e-06	26.7	0.0	1.5	1	1	0	1	1	1	1	Phage	integrase	family